Query 001692
Match_columns 1027
No_of_seqs 539 out of 2932
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 07:02:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001692.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001692hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5022 Myosin heavy chain [Cy 100.0 1E-130 3E-135 1181.3 68.0 945 1-1024 362-1334(1463)
2 PTZ00014 myosin-A; Provisional 100.0 1E-106 3E-111 983.1 37.1 416 1-416 396-818 (821)
3 KOG0160 Myosin class V heavy c 100.0 7E-103 2E-107 925.3 41.7 457 1-463 301-758 (862)
4 KOG0161 Myosin class II heavy 100.0 7E-100 2E-104 960.5 60.2 658 1-687 382-1084(1930)
5 cd01384 MYSc_type_XI Myosin mo 100.0 8.8E-99 2E-103 904.2 34.3 374 1-374 301-674 (674)
6 KOG0164 Myosin class I heavy c 100.0 1.1E-97 2E-102 829.6 34.1 434 1-444 304-755 (1001)
7 cd01380 MYSc_type_V Myosin mot 100.0 2.2E-95 5E-100 880.1 33.7 369 1-370 299-691 (691)
8 cd01378 MYSc_type_I Myosin mot 100.0 2.6E-95 6E-100 877.3 34.0 369 1-370 295-674 (674)
9 cd01377 MYSc_type_II Myosin mo 100.0 3.1E-95 7E-100 879.2 34.0 370 1-370 308-693 (693)
10 cd01381 MYSc_type_VII Myosin m 100.0 2.6E-95 6E-100 875.4 32.9 370 1-370 295-671 (671)
11 cd01387 MYSc_type_XV Myosin mo 100.0 8.4E-95 1.8E-99 871.8 34.2 369 1-370 296-677 (677)
12 cd01383 MYSc_type_VIII Myosin 100.0 1.1E-94 2.3E-99 869.3 33.9 366 1-370 298-677 (677)
13 cd01382 MYSc_type_VI Myosin mo 100.0 5.5E-94 1.2E-98 869.7 33.5 367 1-369 327-715 (717)
14 cd01385 MYSc_type_IX Myosin mo 100.0 6.4E-94 1.4E-98 866.0 33.9 366 1-369 307-687 (692)
15 cd01379 MYSc_type_III Myosin m 100.0 3.7E-93 8E-98 852.9 33.7 347 1-370 302-653 (653)
16 smart00242 MYSc Myosin. Large 100.0 1E-92 2.2E-97 859.5 34.2 371 1-371 303-677 (677)
17 KOG0162 Myosin class I heavy c 100.0 4.3E-92 9.2E-97 784.4 23.7 400 1-404 312-725 (1106)
18 cd00124 MYSc Myosin motor doma 100.0 7.7E-91 1.7E-95 846.0 34.0 370 1-370 296-679 (679)
19 cd01386 MYSc_type_XVIII Myosin 100.0 2.9E-89 6.2E-94 829.2 31.9 370 1-370 294-767 (767)
20 KOG0163 Myosin class VI heavy 100.0 5.4E-86 1.2E-90 735.9 53.7 438 1-449 381-839 (1259)
21 PF00063 Myosin_head: Myosin h 100.0 8.2E-86 1.8E-90 812.7 29.6 359 1-359 297-689 (689)
22 KOG4229 Myosin VII, myosin IXB 100.0 4.7E-52 1E-56 505.2 14.7 456 2-465 360-1008(1062)
23 KOG1892 Actin filament-binding 99.9 6.6E-23 1.4E-27 235.7 15.7 216 745-1026 542-767 (1629)
24 PF01843 DIL: DIL domain; Int 99.5 7.4E-15 1.6E-19 137.4 2.6 52 974-1025 1-52 (105)
25 KOG0161 Myosin class II heavy 99.2 1.5E-07 3.4E-12 122.9 41.1 563 90-686 413-1034(1930)
26 KOG0160 Myosin class V heavy c 98.5 4.7E-06 1E-10 101.7 21.0 85 424-511 674-758 (862)
27 COG5022 Myosin heavy chain [Cy 98.2 0.0006 1.3E-08 86.3 29.2 88 424-511 746-834 (1463)
28 KOG0520 Uncharacterized conser 98.2 2.3E-06 5E-11 104.3 7.4 129 372-517 807-937 (975)
29 KOG0971 Microtubule-associated 98.1 0.0049 1.1E-07 74.0 31.4 58 526-583 295-355 (1243)
30 KOG0520 Uncharacterized conser 97.8 2.6E-05 5.7E-10 95.4 6.6 128 376-509 757-904 (975)
31 PF09726 Macoilin: Transmembra 97.7 0.02 4.3E-07 70.7 28.3 159 520-689 459-653 (697)
32 KOG0250 DNA repair protein RAD 97.5 0.38 8.2E-06 60.5 36.0 76 611-686 389-464 (1074)
33 KOG1029 Endocytic adaptor prot 97.4 0.02 4.3E-07 67.9 22.8 30 613-642 434-463 (1118)
34 PRK11637 AmiB activator; Provi 97.4 0.049 1.1E-06 64.4 26.6 63 622-684 190-252 (428)
35 TIGR02169 SMC_prok_A chromosom 97.4 0.34 7.3E-06 65.0 37.9 24 658-681 469-492 (1164)
36 KOG0996 Structural maintenance 97.3 0.68 1.5E-05 58.4 35.0 12 335-346 209-220 (1293)
37 TIGR02169 SMC_prok_A chromosom 97.3 0.61 1.3E-05 62.6 38.5 38 649-686 453-490 (1164)
38 PF09726 Macoilin: Transmembra 97.3 0.1 2.2E-06 64.6 27.5 70 617-686 588-657 (697)
39 KOG0933 Structural maintenance 97.2 0.057 1.2E-06 66.3 24.0 32 608-639 786-817 (1174)
40 PF12718 Tropomyosin_1: Tropom 97.2 0.072 1.6E-06 52.6 20.9 48 526-584 12-59 (143)
41 KOG0933 Structural maintenance 97.1 0.7 1.5E-05 57.3 31.3 14 90-103 120-133 (1174)
42 PRK11637 AmiB activator; Provi 97.1 0.23 5.1E-06 58.7 27.4 70 615-684 176-245 (428)
43 PRK04863 mukB cell division pr 97.1 0.41 8.8E-06 64.2 31.8 80 608-687 389-478 (1486)
44 TIGR02168 SMC_prok_B chromosom 97.1 0.74 1.6E-05 61.8 35.6 35 116-150 131-165 (1179)
45 KOG1029 Endocytic adaptor prot 97.0 0.61 1.3E-05 55.9 29.1 17 668-684 566-582 (1118)
46 KOG0250 DNA repair protein RAD 97.0 1.7 3.6E-05 55.0 34.4 43 956-998 915-957 (1074)
47 KOG0971 Microtubule-associated 97.0 0.37 8E-06 58.7 27.6 29 944-972 897-925 (1243)
48 KOG0996 Structural maintenance 97.0 1.1 2.3E-05 56.8 31.9 6 252-257 144-149 (1293)
49 PF07888 CALCOCO1: Calcium bin 97.0 0.1 2.2E-06 61.5 22.3 18 528-545 164-181 (546)
50 COG1579 Zn-ribbon protein, pos 97.0 0.25 5.5E-06 52.5 23.2 53 608-660 88-140 (239)
51 COG4942 Membrane-bound metallo 96.9 0.26 5.7E-06 56.3 24.5 56 627-682 193-248 (420)
52 COG1196 Smc Chromosome segrega 96.9 2.1 4.6E-05 57.2 37.1 41 644-684 453-493 (1163)
53 TIGR02168 SMC_prok_B chromosom 96.9 2 4.3E-05 57.8 37.6 20 997-1016 1087-1106(1179)
54 PF00612 IQ: IQ calmodulin-bin 96.8 0.0013 2.8E-08 42.2 3.1 20 424-443 2-21 (21)
55 PF00261 Tropomyosin: Tropomyo 96.8 0.044 9.6E-07 59.2 17.0 67 608-674 91-157 (237)
56 PF00261 Tropomyosin: Tropomyo 96.8 0.38 8.3E-06 52.0 24.1 77 610-686 142-218 (237)
57 KOG4229 Myosin VII, myosin IXB 96.8 0.00076 1.7E-08 85.0 3.7 266 244-512 644-1007(1062)
58 PRK09039 hypothetical protein; 96.8 0.17 3.8E-06 57.6 22.2 138 522-677 47-184 (343)
59 KOG2128 Ras GTPase-activating 96.8 0.021 4.6E-07 72.5 15.8 118 401-518 510-646 (1401)
60 COG1196 Smc Chromosome segrega 96.8 3.9 8.4E-05 54.8 37.8 17 153-169 32-49 (1163)
61 KOG0164 Myosin class I heavy c 96.8 0.015 3.3E-07 68.5 13.1 62 422-493 695-756 (1001)
62 KOG1853 LIS1-interacting prote 96.7 0.94 2E-05 47.4 27.0 23 665-687 164-186 (333)
63 PF12718 Tropomyosin_1: Tropom 96.7 0.35 7.6E-06 47.8 20.3 31 613-643 77-107 (143)
64 PF07888 CALCOCO1: Calcium bin 96.7 0.19 4.1E-06 59.4 21.4 25 521-545 150-174 (546)
65 PRK02224 chromosome segregatio 96.6 4.2 9.1E-05 52.9 35.8 8 356-363 133-140 (880)
66 PRK02224 chromosome segregatio 96.6 1.7 3.7E-05 56.5 31.9 15 671-685 411-425 (880)
67 PF00612 IQ: IQ calmodulin-bin 96.5 0.0035 7.5E-08 40.2 3.5 20 472-491 2-21 (21)
68 PF15070 GOLGA2L5: Putative go 96.5 1.5 3.3E-05 53.6 28.6 32 608-639 152-183 (617)
69 PF08317 Spc7: Spc7 kinetochor 96.5 0.65 1.4E-05 52.7 24.0 81 607-687 207-291 (325)
70 PF12128 DUF3584: Protein of u 96.5 5.9 0.00013 53.2 39.1 31 381-411 228-258 (1201)
71 KOG1003 Actin filament-coating 96.4 0.85 1.8E-05 46.3 21.3 81 607-687 107-187 (205)
72 KOG0163 Myosin class VI heavy 96.4 2.2 4.7E-05 51.3 27.4 55 432-494 782-836 (1259)
73 KOG2128 Ras GTPase-activating 96.3 0.068 1.5E-06 68.1 15.7 162 381-545 513-704 (1401)
74 KOG4643 Uncharacterized coiled 96.2 1.3 2.7E-05 55.1 25.1 48 525-572 405-455 (1195)
75 PRK03918 chromosome segregatio 96.2 0.45 9.7E-06 61.9 23.6 34 651-684 666-699 (880)
76 PRK04863 mukB cell division pr 96.2 6.4 0.00014 53.3 33.6 45 641-685 439-483 (1486)
77 PF08317 Spc7: Spc7 kinetochor 96.1 0.59 1.3E-05 53.0 21.1 15 666-680 277-291 (325)
78 PF12128 DUF3584: Protein of u 96.1 9 0.0002 51.5 38.0 10 1010-1019 965-974 (1201)
79 PHA02562 46 endonuclease subun 95.9 1.6 3.5E-05 53.6 25.6 79 608-686 298-386 (562)
80 PF13851 GAS: Growth-arrest sp 95.9 2 4.4E-05 45.1 22.3 79 608-686 92-171 (201)
81 COG3883 Uncharacterized protei 95.9 2.8 6E-05 45.4 23.1 23 560-582 73-95 (265)
82 KOG0994 Extracellular matrix g 95.8 8.1 0.00018 48.9 29.4 14 668-681 1727-1740(1758)
83 COG4372 Uncharacterized protei 95.8 3.6 7.9E-05 45.9 24.0 74 608-681 209-282 (499)
84 PF07926 TPR_MLP1_2: TPR/MLP1/ 95.8 1.3 2.8E-05 43.2 19.1 28 661-688 101-128 (132)
85 PF10473 CENP-F_leu_zip: Leuci 95.8 1.4 3.1E-05 43.1 19.0 40 641-680 77-116 (140)
86 PF07111 HCR: Alpha helical co 95.8 1.7 3.7E-05 52.3 22.9 49 608-656 161-209 (739)
87 PRK03918 chromosome segregatio 95.8 0.8 1.7E-05 59.6 22.9 76 610-685 627-707 (880)
88 PF04849 HAP1_N: HAP1 N-termin 95.7 0.45 9.8E-06 52.3 17.0 60 614-673 239-298 (306)
89 PF15619 Lebercilin: Ciliary p 95.7 3.1 6.7E-05 43.3 23.3 68 611-681 120-187 (194)
90 PF00038 Filament: Intermediat 95.7 4.8 0.0001 45.4 29.7 36 520-555 67-102 (312)
91 KOG0976 Rho/Rac1-interacting s 95.7 5.6 0.00012 48.3 26.6 57 630-686 249-305 (1265)
92 KOG0978 E3 ubiquitin ligase in 95.7 7.7 0.00017 47.6 35.4 84 608-691 537-620 (698)
93 KOG4643 Uncharacterized coiled 95.7 5.7 0.00012 49.7 27.3 25 521-545 170-194 (1195)
94 KOG0977 Nuclear envelope prote 95.7 0.66 1.4E-05 55.0 19.3 76 610-685 107-182 (546)
95 KOG0977 Nuclear envelope prote 95.6 2.8 6.1E-05 49.9 24.1 81 608-688 147-231 (546)
96 KOG1103 Predicted coiled-coil 95.6 2.8 6E-05 45.9 21.9 52 635-686 243-294 (561)
97 KOG0980 Actin-binding protein 95.6 5.1 0.00011 49.4 26.3 54 608-661 465-518 (980)
98 smart00015 IQ Short calmodulin 95.6 0.012 2.6E-07 39.9 2.7 21 423-443 3-23 (26)
99 KOG0980 Actin-binding protein 95.5 8.1 0.00018 47.8 27.6 37 608-644 486-522 (980)
100 PHA02562 46 endonuclease subun 95.5 2.9 6.2E-05 51.4 25.5 26 615-640 298-323 (562)
101 smart00787 Spc7 Spc7 kinetocho 95.5 2.7 5.8E-05 47.2 22.6 79 610-688 205-287 (312)
102 PF14662 CCDC155: Coiled-coil 95.5 3.4 7.4E-05 42.2 21.9 80 608-687 101-187 (193)
103 KOG2991 Splicing regulator [RN 95.4 4.2 9.1E-05 42.9 24.3 79 608-686 216-299 (330)
104 TIGR00606 rad50 rad50. This fa 95.4 5.9 0.00013 53.8 29.7 20 522-541 844-863 (1311)
105 KOG4360 Uncharacterized coiled 95.4 1 2.2E-05 51.9 18.6 75 612-686 229-303 (596)
106 PRK09039 hypothetical protein; 95.4 0.42 9.1E-06 54.5 16.0 18 788-805 236-253 (343)
107 KOG1853 LIS1-interacting prote 95.3 4.5 9.8E-05 42.5 22.0 77 613-689 95-181 (333)
108 TIGR00606 rad50 rad50. This fa 95.3 1.4 2.9E-05 59.8 23.0 29 890-918 1122-1150(1311)
109 KOG0612 Rho-associated, coiled 95.3 11 0.00024 48.4 28.3 74 611-684 618-693 (1317)
110 PF14662 CCDC155: Coiled-coil 95.3 4.1 8.9E-05 41.6 23.8 65 610-681 124-188 (193)
111 PF15066 CAGE1: Cancer-associa 95.2 3.7 8.1E-05 47.0 22.2 18 669-686 496-513 (527)
112 PF15397 DUF4618: Domain of un 95.1 6.1 0.00013 42.7 24.2 48 642-689 177-224 (258)
113 COG3883 Uncharacterized protei 95.0 5.8 0.00013 43.0 22.2 27 557-583 77-103 (265)
114 PF05667 DUF812: Protein of un 95.0 2.1 4.6E-05 52.2 21.2 35 656-690 445-479 (594)
115 KOG0999 Microtubule-associated 95.0 3.8 8.2E-05 47.7 21.4 31 610-640 108-138 (772)
116 PF10481 CENP-F_N: Cenp-F N-te 95.0 2.3 5E-05 45.4 18.3 31 658-688 162-192 (307)
117 smart00015 IQ Short calmodulin 94.9 0.028 6E-07 38.2 2.9 20 471-490 3-22 (26)
118 smart00787 Spc7 Spc7 kinetocho 94.8 3.5 7.6E-05 46.3 21.0 14 666-679 272-285 (312)
119 COG1340 Uncharacterized archae 94.8 5.7 0.00012 43.5 21.6 8 533-540 112-119 (294)
120 KOG0018 Structural maintenance 94.8 17 0.00036 46.3 28.5 39 424-462 211-249 (1141)
121 PF10174 Cast: RIM-binding pro 94.8 4.2 9.1E-05 51.0 23.4 27 557-583 333-359 (775)
122 KOG0982 Centrosomal protein Nu 94.7 7.8 0.00017 44.0 22.7 9 753-761 484-492 (502)
123 PF04849 HAP1_N: HAP1 N-termin 94.7 8.6 0.00019 42.5 24.6 62 615-676 226-287 (306)
124 PF10481 CENP-F_N: Cenp-F N-te 94.7 2.5 5.5E-05 45.0 17.8 69 621-689 65-133 (307)
125 PF05667 DUF812: Protein of un 94.7 3.1 6.8E-05 50.8 21.5 43 645-687 441-483 (594)
126 PF10473 CENP-F_leu_zip: Leuci 94.6 4.9 0.00011 39.4 20.5 31 612-642 76-106 (140)
127 PF09755 DUF2046: Uncharacteri 94.6 8.7 0.00019 42.4 22.4 21 668-688 181-201 (310)
128 PF15619 Lebercilin: Ciliary p 94.5 6.9 0.00015 40.8 24.1 68 618-688 120-187 (194)
129 KOG0249 LAR-interacting protei 94.5 4 8.6E-05 49.1 20.8 23 995-1025 756-779 (916)
130 COG4372 Uncharacterized protei 94.5 9.4 0.0002 42.8 22.4 29 658-686 252-280 (499)
131 PF13870 DUF4201: Domain of un 94.5 5.9 0.00013 40.7 20.5 75 611-685 93-172 (177)
132 PF05483 SCP-1: Synaptonemal c 94.5 10 0.00022 45.7 24.1 50 640-689 576-625 (786)
133 PTZ00014 myosin-A; Provisional 94.5 0.053 1.1E-06 68.3 6.2 39 425-463 779-817 (821)
134 KOG0982 Centrosomal protein Nu 94.5 2.3 5.1E-05 48.0 17.9 30 658-687 360-389 (502)
135 PF15070 GOLGA2L5: Putative go 94.4 5.6 0.00012 48.8 22.8 14 945-958 572-585 (617)
136 KOG4674 Uncharacterized conser 94.2 27 0.00058 47.4 29.5 31 518-548 693-723 (1822)
137 TIGR03185 DNA_S_dndD DNA sulfu 94.2 13 0.00029 46.5 26.5 43 641-683 425-467 (650)
138 PRK10698 phage shock protein P 94.2 8.6 0.00019 41.1 21.3 76 608-683 98-184 (222)
139 TIGR02977 phageshock_pspA phag 94.1 9.5 0.00021 40.7 21.7 75 608-682 98-183 (219)
140 PF08614 ATG16: Autophagy prot 94.1 0.4 8.6E-06 50.2 10.9 79 608-686 101-179 (194)
141 COG4026 Uncharacterized protei 94.1 0.44 9.6E-06 48.8 10.5 59 627-685 139-197 (290)
142 KOG0995 Centromere-associated 94.1 10 0.00022 45.0 22.8 22 519-540 233-254 (581)
143 PF10168 Nup88: Nuclear pore c 94.1 4.6 0.0001 50.6 21.8 75 612-686 635-713 (717)
144 KOG2129 Uncharacterized conser 94.0 9.3 0.0002 43.1 21.2 26 612-637 249-274 (552)
145 KOG0995 Centromere-associated 94.0 17 0.00037 43.2 27.8 77 609-685 425-505 (581)
146 KOG0976 Rho/Rac1-interacting s 93.9 21 0.00045 43.7 35.0 38 611-648 325-362 (1265)
147 PF00038 Filament: Intermediat 93.9 14 0.0003 41.7 31.3 76 609-684 209-288 (312)
148 KOG0612 Rho-associated, coiled 93.8 7.6 0.00017 49.7 22.4 36 183-218 213-253 (1317)
149 PF09755 DUF2046: Uncharacteri 93.8 13 0.00028 41.1 26.5 45 638-682 157-202 (310)
150 KOG4673 Transcription factor T 93.7 20 0.00044 43.1 27.9 13 66-78 9-21 (961)
151 TIGR02680 conserved hypothetic 93.6 10 0.00022 51.6 25.3 19 655-673 365-383 (1353)
152 TIGR01843 type_I_hlyD type I s 93.6 11 0.00023 44.4 23.3 24 663-686 244-267 (423)
153 PF06785 UPF0242: Uncharacteri 93.6 6.4 0.00014 43.2 18.5 80 607-686 132-222 (401)
154 KOG1937 Uncharacterized conser 93.6 17 0.00037 41.7 22.7 74 616-689 345-420 (521)
155 PF04012 PspA_IM30: PspA/IM30 93.6 7.3 0.00016 41.6 19.6 76 608-683 97-183 (221)
156 KOG1003 Actin filament-coating 93.5 5.4 0.00012 40.7 16.7 19 564-582 8-26 (205)
157 PF09728 Taxilin: Myosin-like 93.4 16 0.00035 41.1 32.1 80 607-686 221-300 (309)
158 PF04156 IncA: IncA protein; 93.4 3.7 8.1E-05 42.7 16.7 55 625-679 132-186 (191)
159 PF09789 DUF2353: Uncharacteri 93.2 17 0.00037 40.7 24.8 29 660-688 191-219 (319)
160 PF01576 Myosin_tail_1: Myosin 93.2 0.025 5.4E-07 72.2 0.0 165 519-687 30-223 (859)
161 COG2433 Uncharacterized conser 93.1 3.5 7.5E-05 49.0 17.0 79 608-686 428-509 (652)
162 PRK04778 septation ring format 93.0 29 0.00063 42.7 31.6 15 568-582 283-297 (569)
163 KOG0964 Structural maintenance 93.0 16 0.00035 45.8 22.7 21 528-548 300-320 (1200)
164 TIGR03185 DNA_S_dndD DNA sulfu 92.8 14 0.0003 46.4 23.4 69 620-688 395-465 (650)
165 KOG0964 Structural maintenance 92.8 12 0.00026 46.9 21.3 32 655-686 464-495 (1200)
166 PF05911 DUF869: Plant protein 92.6 27 0.00059 44.0 24.8 79 608-686 119-204 (769)
167 PRK01156 chromosome segregatio 92.6 44 0.00095 43.7 36.4 16 996-1011 798-813 (895)
168 PRK10361 DNA recombination pro 92.3 29 0.00064 41.0 24.9 12 670-681 170-181 (475)
169 PRK10884 SH3 domain-containing 92.2 1.4 2.9E-05 46.4 11.2 69 608-686 92-160 (206)
170 PF04111 APG6: Autophagy prote 92.2 2.1 4.6E-05 48.2 13.5 31 656-686 104-134 (314)
171 PF13870 DUF4201: Domain of un 92.1 15 0.00033 37.6 18.9 79 610-688 57-135 (177)
172 PF04111 APG6: Autophagy prote 92.1 2.3 5E-05 47.9 13.8 83 609-691 50-132 (314)
173 PF09730 BicD: Microtubule-ass 92.1 20 0.00044 44.6 22.5 28 656-683 154-181 (717)
174 KOG0978 E3 ubiquitin ligase in 92.1 38 0.00082 41.9 31.0 81 608-688 530-610 (698)
175 PRK10884 SH3 domain-containing 92.0 2.1 4.5E-05 45.1 12.3 34 627-660 122-155 (206)
176 PF13514 AAA_27: AAA domain 91.9 58 0.0012 43.7 33.4 23 34-56 79-101 (1111)
177 PF00769 ERM: Ezrin/radixin/mo 91.8 6.2 0.00013 42.9 16.1 48 634-681 65-112 (246)
178 PF10186 Atg14: UV radiation r 91.7 13 0.00028 41.5 19.5 72 612-683 73-144 (302)
179 PF09738 DUF2051: Double stran 91.6 3.8 8.2E-05 45.6 14.4 70 612-681 101-170 (302)
180 KOG1899 LAR transmembrane tyro 91.6 4.1 9E-05 48.1 15.0 25 663-687 236-260 (861)
181 KOG0946 ER-Golgi vesicle-tethe 91.6 37 0.0008 42.0 23.1 81 608-688 791-885 (970)
182 KOG0804 Cytoplasmic Zn-finger 91.6 6.3 0.00014 45.1 16.0 14 664-677 434-447 (493)
183 PF15066 CAGE1: Cancer-associa 91.6 16 0.00036 42.0 19.2 25 521-545 331-355 (527)
184 TIGR02680 conserved hypothetic 91.6 69 0.0015 43.8 31.4 20 428-447 725-744 (1353)
185 PF05911 DUF869: Plant protein 91.5 20 0.00044 45.1 21.9 75 608-682 91-165 (769)
186 KOG0979 Structural maintenance 91.5 49 0.0011 42.1 24.6 25 521-545 202-226 (1072)
187 TIGR01843 type_I_hlyD type I s 91.5 22 0.00047 41.8 22.0 71 613-683 200-271 (423)
188 PLN02939 transferase, transfer 91.4 18 0.00038 46.5 21.5 61 521-582 226-286 (977)
189 COG4026 Uncharacterized protei 91.4 1.2 2.6E-05 45.8 9.3 74 608-681 141-214 (290)
190 PF07111 HCR: Alpha helical co 91.4 42 0.00091 41.0 24.2 25 664-688 241-265 (739)
191 KOG0963 Transcription factor/C 91.4 40 0.00086 40.7 29.0 7 981-987 602-608 (629)
192 KOG4360 Uncharacterized coiled 91.4 5.3 0.00012 46.3 15.3 74 612-685 222-295 (596)
193 KOG0999 Microtubule-associated 91.3 29 0.00063 40.8 21.0 19 811-829 486-504 (772)
194 COG4942 Membrane-bound metallo 91.2 35 0.00075 39.6 28.4 31 641-671 214-244 (420)
195 PF14197 Cep57_CLD_2: Centroso 91.1 3.4 7.3E-05 35.4 10.4 65 614-685 3-67 (69)
196 PF13851 GAS: Growth-arrest sp 91.1 22 0.00048 37.3 19.4 31 655-685 97-127 (201)
197 KOG0994 Extracellular matrix g 91.1 57 0.0012 41.9 34.3 27 660-686 1712-1738(1758)
198 PF08614 ATG16: Autophagy prot 91.0 3 6.6E-05 43.6 12.4 60 609-668 116-175 (194)
199 PF07926 TPR_MLP1_2: TPR/MLP1/ 90.9 17 0.00036 35.5 19.8 65 612-676 62-130 (132)
200 KOG4674 Uncharacterized conser 90.9 80 0.0017 43.3 37.7 67 525-591 763-829 (1822)
201 KOG0979 Structural maintenance 90.8 24 0.00052 44.7 21.1 29 608-636 275-303 (1072)
202 PF03148 Tektin: Tektin family 90.5 40 0.00087 39.2 25.0 47 608-654 250-296 (384)
203 PF07889 DUF1664: Protein of u 90.5 2.9 6.2E-05 40.2 10.4 68 612-679 57-124 (126)
204 PF05010 TACC: Transforming ac 90.3 27 0.00058 36.8 22.5 8 627-634 122-129 (207)
205 PF01576 Myosin_tail_1: Myosin 90.2 0.085 1.8E-06 67.4 0.0 76 611-686 316-391 (859)
206 TIGR03007 pepcterm_ChnLen poly 90.1 38 0.00082 40.9 22.7 22 663-684 322-343 (498)
207 TIGR01005 eps_transp_fam exopo 90.0 67 0.0015 41.1 30.5 30 657-686 375-404 (754)
208 PF05010 TACC: Transforming ac 90.0 28 0.0006 36.6 25.5 72 615-686 124-196 (207)
209 PF10186 Atg14: UV radiation r 90.0 26 0.00055 39.1 19.9 22 659-680 127-148 (302)
210 KOG1962 B-cell receptor-associ 90.0 2.5 5.4E-05 44.3 10.4 52 638-689 159-210 (216)
211 PF14197 Cep57_CLD_2: Centroso 89.9 3.6 7.8E-05 35.2 9.6 24 663-686 38-61 (69)
212 PF15254 CCDC14: Coiled-coil d 89.8 26 0.00056 43.1 19.7 63 614-676 492-554 (861)
213 PF08826 DMPK_coil: DMPK coile 89.7 5.4 0.00012 33.2 10.0 12 670-681 44-55 (61)
214 PF06785 UPF0242: Uncharacteri 89.7 37 0.0008 37.6 20.3 23 654-676 197-219 (401)
215 KOG4593 Mitotic checkpoint pro 89.7 58 0.0013 39.8 30.9 36 891-927 605-640 (716)
216 COG1382 GimC Prefoldin, chaper 89.5 10 0.00022 35.9 13.1 78 609-686 20-112 (119)
217 PF09730 BicD: Microtubule-ass 89.5 39 0.00085 42.1 21.7 25 890-923 679-703 (717)
218 COG2433 Uncharacterized conser 89.3 6.8 0.00015 46.7 14.3 16 131-147 59-74 (652)
219 PF10168 Nup88: Nuclear pore c 89.2 60 0.0013 40.9 23.6 61 523-583 602-662 (717)
220 PF10498 IFT57: Intra-flagella 89.1 19 0.00042 41.2 17.7 70 616-685 280-355 (359)
221 TIGR01005 eps_transp_fam exopo 88.9 35 0.00077 43.6 22.2 16 611-626 290-305 (754)
222 PF15254 CCDC14: Coiled-coil d 88.7 70 0.0015 39.6 25.3 47 640-686 497-543 (861)
223 PF10498 IFT57: Intra-flagella 88.7 16 0.00035 41.8 16.8 14 670-683 333-346 (359)
224 KOG0946 ER-Golgi vesicle-tethe 88.6 73 0.0016 39.6 22.7 14 28-41 39-52 (970)
225 PF10146 zf-C4H2: Zinc finger- 88.4 17 0.00038 38.9 15.7 20 667-686 83-102 (230)
226 PF11559 ADIP: Afadin- and alp 88.4 8.8 0.00019 38.3 12.9 20 668-687 129-148 (151)
227 KOG4403 Cell surface glycoprot 88.4 50 0.0011 37.8 19.4 35 607-641 345-379 (575)
228 PRK04778 septation ring format 88.4 73 0.0016 39.2 31.7 75 612-686 278-362 (569)
229 KOG3684 Ca2+-activated K+ chan 88.1 29 0.00062 40.3 17.7 40 453-492 346-385 (489)
230 PF12325 TMF_TATA_bd: TATA ele 88.0 25 0.00055 33.6 15.8 6 623-628 75-80 (120)
231 PRK11281 hypothetical protein; 88.0 17 0.00037 47.8 18.2 19 610-628 193-211 (1113)
232 PF05384 DegS: Sensor protein 87.9 32 0.0007 34.6 20.9 79 608-686 76-154 (159)
233 PRK10929 putative mechanosensi 87.8 27 0.00059 45.9 19.7 19 611-629 175-193 (1109)
234 PF08826 DMPK_coil: DMPK coile 87.7 8.9 0.00019 31.9 10.0 42 637-678 18-59 (61)
235 PF12777 MT: Microtubule-bindi 87.6 42 0.00091 38.5 19.5 12 516-527 10-21 (344)
236 PF10146 zf-C4H2: Zinc finger- 87.5 26 0.00057 37.5 16.4 62 612-680 42-103 (230)
237 PF10174 Cast: RIM-binding pro 87.3 95 0.0021 39.4 34.0 80 608-687 513-598 (775)
238 COG5185 HEC1 Protein involved 87.3 64 0.0014 37.4 19.7 16 948-963 603-618 (622)
239 KOG0243 Kinesin-like protein [ 87.1 27 0.00058 44.8 18.3 38 247-284 163-216 (1041)
240 TIGR00634 recN DNA repair prot 87.0 45 0.00097 41.0 20.6 23 662-684 350-372 (563)
241 PRK12704 phosphodiesterase; Pr 86.9 26 0.00057 42.4 17.9 17 946-962 436-452 (520)
242 KOG0804 Cytoplasmic Zn-finger 86.8 21 0.00045 41.1 15.6 22 663-684 426-447 (493)
243 PF13514 AAA_27: AAA domain 85.9 76 0.0017 42.5 23.3 83 604-686 237-324 (1111)
244 PF14915 CCDC144C: CCDC144C pr 85.9 60 0.0013 35.7 25.1 85 562-653 181-265 (305)
245 KOG1962 B-cell receptor-associ 85.8 11 0.00024 39.6 12.0 61 615-675 150-210 (216)
246 KOG2991 Splicing regulator [RN 85.7 54 0.0012 35.0 26.8 70 618-687 238-307 (330)
247 PF05622 HOOK: HOOK protein; 85.5 0.25 5.5E-06 62.3 0.0 57 628-684 368-424 (713)
248 PRK10869 recombination and rep 85.4 1E+02 0.0022 37.9 22.7 32 657-688 340-371 (553)
249 PF10205 KLRAQ: Predicted coil 85.4 24 0.00052 32.5 12.4 71 615-685 4-74 (102)
250 TIGR03319 YmdA_YtgF conserved 85.4 41 0.00089 40.7 18.5 114 562-687 20-133 (514)
251 PRK00106 hypothetical protein; 85.1 53 0.0011 39.8 19.0 129 554-687 26-154 (535)
252 PF10212 TTKRSYEDQ: Predicted 84.9 93 0.002 37.1 21.3 27 659-685 488-514 (518)
253 PF11932 DUF3450: Protein of u 84.8 12 0.00026 40.8 12.7 76 608-683 41-116 (251)
254 COG1842 PspA Phage shock prote 84.5 61 0.0013 34.7 19.8 25 518-542 42-66 (225)
255 PRK15422 septal ring assembly 84.5 18 0.00039 31.4 10.6 22 616-637 18-39 (79)
256 PF05769 DUF837: Protein of un 84.4 53 0.0012 33.9 21.1 23 665-687 153-175 (181)
257 KOG4809 Rab6 GTPase-interactin 84.4 67 0.0015 38.0 18.3 77 608-684 330-406 (654)
258 PF14915 CCDC144C: CCDC144C pr 83.8 74 0.0016 35.0 30.5 37 654-690 203-239 (305)
259 cd00632 Prefoldin_beta Prefold 83.7 24 0.00052 32.8 12.5 36 649-684 68-103 (105)
260 PLN03188 kinesin-12 family pro 83.6 1.6E+02 0.0036 38.8 29.1 39 649-687 1202-1240(1320)
261 PF12761 End3: Actin cytoskele 83.6 15 0.00033 37.9 11.7 76 611-686 98-195 (195)
262 PF07798 DUF1640: Protein of u 83.4 51 0.0011 33.9 15.9 78 608-688 72-154 (177)
263 PF11180 DUF2968: Protein of u 83.3 29 0.00063 35.6 13.4 81 611-691 107-187 (192)
264 PF07106 TBPIP: Tat binding pr 83.2 5.3 0.00011 40.7 8.5 67 608-686 71-137 (169)
265 PF02403 Seryl_tRNA_N: Seryl-t 83.0 6.4 0.00014 36.8 8.4 76 607-686 27-102 (108)
266 KOG4809 Rab6 GTPase-interactin 82.8 1.1E+02 0.0024 36.3 19.9 33 614-646 371-403 (654)
267 PF12240 Angiomotin_C: Angiomo 82.8 63 0.0014 33.5 17.7 42 650-691 128-169 (205)
268 PF06005 DUF904: Protein of un 82.8 30 0.00065 29.9 11.5 10 621-630 23-32 (72)
269 PF03962 Mnd1: Mnd1 family; I 82.8 12 0.00026 38.9 10.9 78 610-688 70-151 (188)
270 PF15397 DUF4618: Domain of un 82.7 78 0.0017 34.5 24.1 45 643-687 185-229 (258)
271 PF11932 DUF3450: Protein of u 82.7 59 0.0013 35.4 17.0 31 615-645 69-99 (251)
272 COG1382 GimC Prefoldin, chaper 82.6 22 0.00049 33.7 11.5 34 567-600 13-49 (119)
273 PF05266 DUF724: Protein of un 82.5 14 0.00031 38.3 11.4 32 616-647 124-155 (190)
274 COG0419 SbcC ATPase involved i 82.2 1.8E+02 0.0038 38.2 29.0 38 950-987 740-777 (908)
275 PF10234 Cluap1: Clusterin-ass 82.1 71 0.0015 35.0 16.8 13 304-316 3-15 (267)
276 PF05557 MAD: Mitotic checkpoi 82.0 0.43 9.3E-06 60.4 0.0 11 670-680 286-296 (722)
277 KOG4673 Transcription factor T 82.0 1.3E+02 0.0029 36.6 36.4 48 532-579 584-631 (961)
278 PF09731 Mitofilin: Mitochondr 81.7 1.4E+02 0.003 36.9 21.8 54 752-806 448-507 (582)
279 PRK09343 prefoldin subunit bet 81.6 35 0.00076 32.7 12.9 46 643-688 70-115 (121)
280 KOG0288 WD40 repeat protein Ti 81.4 33 0.00071 39.2 14.1 11 817-827 245-255 (459)
281 KOG4603 TBP-1 interacting prot 81.3 15 0.00032 36.7 10.1 25 661-685 119-143 (201)
282 PRK11281 hypothetical protein; 81.0 1E+02 0.0023 40.8 20.7 25 521-545 80-104 (1113)
283 PRK01156 chromosome segregatio 81.0 1.9E+02 0.0041 37.8 36.1 33 654-686 412-444 (895)
284 PRK13729 conjugal transfer pil 81.0 5 0.00011 46.9 8.0 47 624-670 70-116 (475)
285 PF07106 TBPIP: Tat binding pr 80.9 7.6 0.00016 39.6 8.7 24 611-634 81-104 (169)
286 KOG0018 Structural maintenance 80.9 1.8E+02 0.004 37.5 32.6 9 305-313 67-75 (1141)
287 TIGR02338 gimC_beta prefoldin, 80.8 36 0.00077 32.0 12.5 34 650-683 73-106 (110)
288 PF10205 KLRAQ: Predicted coil 80.8 31 0.00068 31.8 11.3 68 610-677 6-73 (102)
289 PF15456 Uds1: Up-regulated Du 80.8 27 0.00057 33.7 11.6 80 607-687 20-110 (124)
290 COG4477 EzrA Negative regulato 80.6 1.3E+02 0.0029 35.8 24.3 79 607-685 345-423 (570)
291 PF15294 Leu_zip: Leucine zipp 80.6 60 0.0013 35.6 15.5 19 668-686 256-274 (278)
292 PF01486 K-box: K-box region; 79.7 25 0.00054 32.4 10.9 80 607-688 10-98 (100)
293 PF01920 Prefoldin_2: Prefoldi 79.2 44 0.00095 30.8 12.6 33 610-642 6-38 (106)
294 KOG4403 Cell surface glycoprot 79.1 71 0.0015 36.6 15.7 14 532-545 256-269 (575)
295 PF15290 Syntaphilin: Golgi-lo 79.0 74 0.0016 34.6 15.1 25 613-637 121-145 (305)
296 KOG0239 Kinesin (KAR3 subfamil 78.9 1.2E+02 0.0026 38.0 19.4 21 811-831 479-500 (670)
297 PF10267 Tmemb_cc2: Predicted 78.7 58 0.0013 37.8 15.6 18 661-678 301-318 (395)
298 KOG2129 Uncharacterized conser 78.6 1.3E+02 0.0028 34.5 22.8 27 608-634 252-278 (552)
299 KOG0963 Transcription factor/C 78.3 1.7E+02 0.0036 35.6 31.0 25 521-545 189-213 (629)
300 KOG0240 Kinesin (SMY1 subfamil 78.3 1.4E+02 0.003 36.0 18.3 64 609-672 414-477 (607)
301 KOG0243 Kinesin-like protein [ 78.2 1.5E+02 0.0032 38.5 19.8 12 305-316 181-192 (1041)
302 PRK13729 conjugal transfer pil 78.1 9 0.00019 44.9 8.9 59 628-686 67-125 (475)
303 PF09738 DUF2051: Double stran 78.1 1.2E+02 0.0027 33.9 19.5 32 657-688 218-249 (302)
304 PF13863 DUF4200: Domain of un 78.1 66 0.0014 30.8 16.3 32 654-685 77-108 (126)
305 smart00338 BRLZ basic region l 78.1 23 0.0005 29.7 9.3 49 640-688 15-63 (65)
306 PF05622 HOOK: HOOK protein; 78.1 0.69 1.5E-05 58.4 0.0 8 565-572 296-303 (713)
307 PF05557 MAD: Mitotic checkpoi 78.0 0.7 1.5E-05 58.5 0.0 21 561-581 306-326 (722)
308 PF09789 DUF2353: Uncharacteri 78.0 1.3E+02 0.0027 34.0 24.2 23 560-582 79-101 (319)
309 TIGR03752 conj_TIGR03752 integ 78.0 21 0.00046 41.8 11.8 81 607-687 57-138 (472)
310 PF13863 DUF4200: Domain of un 77.5 69 0.0015 30.7 16.4 62 624-685 54-115 (126)
311 PF13166 AAA_13: AAA domain 77.2 2.1E+02 0.0046 36.2 24.3 177 509-687 270-453 (712)
312 PF04012 PspA_IM30: PspA/IM30 77.0 1.1E+02 0.0023 32.6 19.8 23 560-582 51-73 (221)
313 PF05266 DUF724: Protein of un 76.8 62 0.0013 33.7 13.8 49 624-672 125-173 (190)
314 COG0419 SbcC ATPase involved i 76.7 2.5E+02 0.0055 36.8 28.0 29 656-684 415-443 (908)
315 KOG2685 Cystoskeletal protein 76.4 1.5E+02 0.0033 34.2 23.1 49 609-657 278-326 (421)
316 TIGR03017 EpsF chain length de 76.3 1.7E+02 0.0037 34.6 22.4 179 495-688 145-334 (444)
317 TIGR01000 bacteriocin_acc bact 76.1 1.8E+02 0.0039 34.8 24.8 25 662-686 288-312 (457)
318 PRK04406 hypothetical protein; 76.0 21 0.00045 31.1 8.5 22 663-684 30-51 (75)
319 PF10046 BLOC1_2: Biogenesis o 75.9 46 0.00099 30.7 11.3 72 611-682 23-97 (99)
320 PF06818 Fez1: Fez1; InterPro 75.7 39 0.00085 35.2 11.8 73 617-689 32-104 (202)
321 PF09787 Golgin_A5: Golgin sub 75.7 1.1E+02 0.0024 37.2 17.8 167 522-688 110-304 (511)
322 PF05262 Borrelia_P83: Borreli 75.7 1.9E+02 0.004 34.7 19.5 7 352-358 152-158 (489)
323 PF05837 CENP-H: Centromere pr 75.7 24 0.00052 33.0 9.6 71 616-687 3-73 (106)
324 PF10234 Cluap1: Clusterin-ass 75.6 1.3E+02 0.0028 33.0 18.8 23 614-636 195-217 (267)
325 PF00170 bZIP_1: bZIP transcri 75.6 28 0.00061 29.1 9.1 41 646-686 21-61 (64)
326 KOG2751 Beclin-like protein [S 75.1 87 0.0019 36.2 15.2 31 656-686 237-267 (447)
327 PF06428 Sec2p: GDP/GTP exchan 75.1 3.3 7.2E-05 38.1 3.6 75 608-689 7-82 (100)
328 KOG0288 WD40 repeat protein Ti 74.7 68 0.0015 36.7 14.1 15 531-545 9-23 (459)
329 PF06008 Laminin_I: Laminin Do 74.7 1.4E+02 0.003 32.8 22.5 67 612-678 181-247 (264)
330 PF05701 WEMBL: Weak chloropla 74.7 2.1E+02 0.0045 34.9 35.9 74 608-681 336-416 (522)
331 cd00632 Prefoldin_beta Prefold 74.4 53 0.0011 30.5 11.6 12 568-579 7-18 (105)
332 PF14389 Lzipper-MIP1: Leucine 74.4 9.5 0.00021 34.4 6.2 72 616-687 8-83 (88)
333 PRK04406 hypothetical protein; 74.3 25 0.00055 30.6 8.6 22 621-642 9-30 (75)
334 PLN02939 transferase, transfer 74.2 2.8E+02 0.0061 36.1 21.7 21 559-579 232-252 (977)
335 PTZ00121 MAEBL; Provisional 74.2 3.2E+02 0.0069 36.7 33.2 36 958-993 1993-2031(2084)
336 PF05529 Bap31: B-cell recepto 74.1 25 0.00054 36.6 10.4 15 672-686 168-182 (192)
337 KOG1899 LAR transmembrane tyro 74.0 1.4E+02 0.0029 36.2 16.7 19 1003-1021 709-727 (861)
338 COG4717 Uncharacterized conser 74.0 2.5E+02 0.0055 35.5 31.3 23 436-458 553-575 (984)
339 PF04102 SlyX: SlyX; InterPro 73.9 18 0.00039 31.0 7.5 33 656-688 16-48 (69)
340 PF14992 TMCO5: TMCO5 family 73.6 1.1E+02 0.0024 33.6 15.1 12 668-679 154-165 (280)
341 COG1842 PspA Phage shock prote 73.6 1.3E+02 0.0029 32.1 20.1 22 561-582 53-74 (225)
342 KOG4302 Microtubule-associated 73.3 2.4E+02 0.0053 35.0 19.8 173 516-688 56-256 (660)
343 PF10211 Ax_dynein_light: Axon 73.0 1.2E+02 0.0027 31.5 15.3 22 617-638 128-149 (189)
344 COG0497 RecN ATPase involved i 72.9 2.3E+02 0.0049 34.5 23.0 28 659-686 343-370 (557)
345 PF05701 WEMBL: Weak chloropla 72.8 2.3E+02 0.005 34.5 35.6 13 615-627 315-327 (522)
346 PF09744 Jnk-SapK_ap_N: JNK_SA 72.8 47 0.001 33.4 11.3 81 609-692 36-116 (158)
347 TIGR02338 gimC_beta prefoldin, 72.5 86 0.0019 29.4 12.7 32 656-687 72-103 (110)
348 TIGR03495 phage_LysB phage lys 72.5 62 0.0013 31.6 11.6 72 615-686 25-96 (135)
349 PF10211 Ax_dynein_light: Axon 72.5 71 0.0015 33.2 13.1 29 610-638 128-156 (189)
350 PF05700 BCAS2: Breast carcino 72.3 1.4E+02 0.0031 31.8 17.4 77 609-688 136-212 (221)
351 KOG2010 Double stranded RNA bi 72.2 16 0.00034 40.1 8.2 72 612-683 136-207 (405)
352 TIGR01000 bacteriocin_acc bact 72.0 2.2E+02 0.0048 34.0 24.9 29 655-683 288-316 (457)
353 TIGR03752 conj_TIGR03752 integ 71.9 34 0.00073 40.2 11.4 73 612-684 69-142 (472)
354 PRK02119 hypothetical protein; 71.7 25 0.00055 30.5 8.0 13 672-684 37-49 (73)
355 KOG2891 Surface glycoprotein [ 71.2 1.5E+02 0.0034 31.8 18.0 28 293-320 107-138 (445)
356 KOG4603 TBP-1 interacting prot 71.2 40 0.00087 33.7 10.0 29 654-682 119-147 (201)
357 TIGR03007 pepcterm_ChnLen poly 71.1 2.4E+02 0.0052 34.0 27.1 27 657-683 354-380 (498)
358 PF08172 CASP_C: CASP C termin 70.8 48 0.001 36.0 11.7 39 649-687 91-129 (248)
359 PF04582 Reo_sigmaC: Reovirus 70.6 8.5 0.00019 42.9 6.0 76 612-687 80-155 (326)
360 PF14389 Lzipper-MIP1: Leucine 70.6 32 0.00069 31.0 8.7 56 527-582 7-76 (88)
361 PF06705 SF-assemblin: SF-asse 70.2 1.7E+02 0.0036 31.8 22.4 11 672-682 175-185 (247)
362 KOG2685 Cystoskeletal protein 70.1 2.1E+02 0.0046 33.0 25.6 32 651-682 358-389 (421)
363 PRK03947 prefoldin subunit alp 70.1 65 0.0014 31.6 11.7 34 655-688 98-131 (140)
364 PRK00409 recombination and DNA 69.9 78 0.0017 40.5 15.2 12 350-361 367-379 (782)
365 PRK09343 prefoldin subunit bet 69.9 1.1E+02 0.0023 29.4 13.0 13 567-579 14-26 (121)
366 PRK09841 cryptic autophosphory 69.9 2.9E+02 0.0063 35.2 20.4 21 657-677 369-389 (726)
367 PTZ00121 MAEBL; Provisional 69.7 4E+02 0.0086 35.9 34.6 7 266-272 826-832 (2084)
368 PF13094 CENP-Q: CENP-Q, a CEN 69.4 35 0.00075 34.4 9.9 38 610-647 21-58 (160)
369 PF07851 TMPIT: TMPIT-like pro 69.1 64 0.0014 36.4 12.5 54 610-663 5-58 (330)
370 KOG4005 Transcription factor X 69.1 73 0.0016 33.6 11.8 60 629-688 89-148 (292)
371 KOG2264 Exostosin EXT1L [Signa 69.0 39 0.00083 39.9 10.8 59 629-687 92-150 (907)
372 KOG3433 Protein involved in me 68.8 54 0.0012 33.3 10.4 64 614-684 79-142 (203)
373 COG1340 Uncharacterized archae 68.8 1.9E+02 0.0042 32.0 28.8 33 653-685 216-248 (294)
374 PF06160 EzrA: Septation ring 68.7 2.9E+02 0.0063 34.0 28.8 248 426-684 7-271 (560)
375 KOG2751 Beclin-like protein [S 68.6 1.5E+02 0.0032 34.4 15.2 75 613-687 187-261 (447)
376 KOG2891 Surface glycoprotein [ 68.2 1.8E+02 0.0039 31.4 17.3 13 157-169 51-63 (445)
377 PF01920 Prefoldin_2: Prefoldi 68.2 98 0.0021 28.4 12.8 15 615-629 18-32 (106)
378 PRK02119 hypothetical protein; 68.0 38 0.00082 29.4 8.3 10 672-681 44-53 (73)
379 PF13747 DUF4164: Domain of un 68.0 94 0.002 28.1 12.0 37 608-644 38-74 (89)
380 KOG2077 JNK/SAPK-associated pr 67.9 42 0.0009 39.7 10.9 53 608-660 328-380 (832)
381 COG2900 SlyX Uncharacterized p 67.9 37 0.0008 29.1 7.8 28 661-688 32-59 (72)
382 PF04102 SlyX: SlyX; InterPro 67.8 28 0.0006 29.8 7.4 15 662-676 36-50 (69)
383 TIGR01069 mutS2 MutS2 family p 67.5 74 0.0016 40.6 14.3 11 196-206 220-230 (771)
384 PRK02793 phi X174 lysis protei 67.2 36 0.00077 29.4 7.9 7 676-682 40-46 (72)
385 PF08172 CASP_C: CASP C termin 67.2 46 0.00099 36.2 10.7 31 658-688 93-123 (248)
386 PF06428 Sec2p: GDP/GTP exchan 67.0 3.9 8.4E-05 37.7 2.1 66 613-678 19-85 (100)
387 TIGR02231 conserved hypothetic 66.8 54 0.0012 39.9 12.6 80 608-687 70-167 (525)
388 KOG1103 Predicted coiled-coil 66.6 2.2E+02 0.0047 31.8 23.6 18 531-548 142-159 (561)
389 KOG0239 Kinesin (KAR3 subfamil 66.3 1.5E+02 0.0032 37.2 16.1 16 530-545 177-192 (670)
390 KOG0962 DNA repair protein RAD 65.6 4.6E+02 0.0099 35.1 24.4 32 612-643 300-331 (1294)
391 PF02994 Transposase_22: L1 tr 65.5 12 0.00026 43.3 6.2 30 656-685 156-185 (370)
392 PF12777 MT: Microtubule-bindi 65.5 27 0.00059 40.0 9.2 75 612-686 231-305 (344)
393 PF12072 DUF3552: Domain of un 65.3 1.8E+02 0.004 30.5 18.5 9 673-681 121-129 (201)
394 PRK00409 recombination and DNA 65.1 1.6E+02 0.0035 37.8 16.6 11 196-206 225-235 (782)
395 PF10224 DUF2205: Predicted co 65.1 31 0.00068 30.4 7.2 42 646-687 18-59 (80)
396 PRK05431 seryl-tRNA synthetase 65.1 39 0.00085 39.9 10.6 80 608-691 27-106 (425)
397 PF07989 Microtub_assoc: Micro 65.0 61 0.0013 28.3 9.0 26 608-633 6-31 (75)
398 PLN02678 seryl-tRNA synthetase 64.9 41 0.00088 39.9 10.5 80 608-691 32-111 (448)
399 PF15290 Syntaphilin: Golgi-lo 64.7 86 0.0019 34.1 11.7 27 611-637 70-96 (305)
400 PRK00846 hypothetical protein; 64.6 50 0.0011 28.9 8.2 7 675-681 44-50 (77)
401 PRK12704 phosphodiesterase; Pr 64.5 3.3E+02 0.0072 33.1 25.9 6 822-827 363-368 (520)
402 PRK00736 hypothetical protein; 63.4 47 0.001 28.3 7.9 11 626-636 8-18 (68)
403 PF07798 DUF1640: Protein of u 63.3 1.8E+02 0.004 29.8 19.4 37 553-589 66-102 (177)
404 PRK11519 tyrosine kinase; Prov 63.1 4.1E+02 0.009 33.8 20.7 14 532-545 271-284 (719)
405 COG1730 GIM5 Predicted prefold 63.1 1.6E+02 0.0035 29.2 12.6 24 659-682 102-125 (145)
406 PRK02793 phi X174 lysis protei 62.6 50 0.0011 28.5 8.0 12 671-682 42-53 (72)
407 KOG0942 E3 ubiquitin protein l 62.6 7.7 0.00017 48.2 4.1 29 419-447 25-53 (1001)
408 PF06120 Phage_HK97_TLTM: Tail 62.3 2.6E+02 0.0057 31.3 16.6 29 513-541 40-68 (301)
409 PF15450 DUF4631: Domain of un 62.3 3.4E+02 0.0073 32.5 34.1 82 607-688 349-435 (531)
410 PRK00295 hypothetical protein; 62.1 56 0.0012 27.9 8.1 17 625-641 7-23 (68)
411 KOG3433 Protein involved in me 62.0 87 0.0019 31.9 10.4 12 750-761 168-179 (203)
412 PF08647 BRE1: BRE1 E3 ubiquit 61.6 1.3E+02 0.0028 27.5 12.9 38 608-645 30-67 (96)
413 PF10458 Val_tRNA-synt_C: Valy 61.5 62 0.0014 27.3 8.3 17 659-675 47-63 (66)
414 PF12004 DUF3498: Domain of un 60.9 2.8 6E-05 49.6 0.0 27 519-545 374-400 (495)
415 PF00170 bZIP_1: bZIP transcri 60.9 96 0.0021 25.9 9.4 34 648-681 30-63 (64)
416 KOG2077 JNK/SAPK-associated pr 60.7 81 0.0018 37.4 11.4 34 609-642 343-376 (832)
417 PF06103 DUF948: Bacterial pro 60.5 1.3E+02 0.0027 27.1 10.7 19 657-675 67-85 (90)
418 PF15188 CCDC-167: Coiled-coil 60.4 43 0.00094 29.9 7.3 27 662-688 40-66 (85)
419 PF15233 SYCE1: Synaptonemal c 60.2 72 0.0016 30.6 9.0 65 622-686 5-69 (134)
420 KOG2264 Exostosin EXT1L [Signa 60.2 30 0.00066 40.7 8.0 48 617-664 101-148 (907)
421 PRK00846 hypothetical protein; 60.1 87 0.0019 27.5 8.9 23 663-685 39-61 (77)
422 KOG2391 Vacuolar sorting prote 60.1 58 0.0013 36.3 9.7 19 251-269 127-145 (365)
423 PF03148 Tektin: Tektin family 59.7 3.4E+02 0.0073 31.7 33.2 28 517-544 67-94 (384)
424 PF12761 End3: Actin cytoskele 59.6 36 0.00078 35.2 7.6 20 522-541 97-116 (195)
425 PRK10246 exonuclease subunit S 59.2 5.7E+02 0.012 34.1 26.4 23 24-46 35-57 (1047)
426 cd00890 Prefoldin Prefoldin is 58.8 1.6E+02 0.0034 28.1 11.9 31 656-686 92-122 (129)
427 TIGR00293 prefoldin, archaeal 58.6 1.6E+02 0.0035 28.1 11.9 28 657-684 92-119 (126)
428 PF10267 Tmemb_cc2: Predicted 58.6 3.5E+02 0.0077 31.5 17.7 18 615-632 275-292 (395)
429 TIGR00634 recN DNA repair prot 58.5 4.3E+02 0.0093 32.5 20.0 68 609-680 308-375 (563)
430 PF03961 DUF342: Protein of un 58.2 62 0.0013 38.6 10.7 71 614-684 332-408 (451)
431 PF04871 Uso1_p115_C: Uso1 / p 57.8 1.9E+02 0.0042 28.3 16.1 29 656-684 82-110 (136)
432 COG3206 GumC Uncharacterized p 57.8 3.9E+02 0.0085 31.8 20.7 25 610-634 286-310 (458)
433 PF07989 Microtub_assoc: Micro 57.7 1.3E+02 0.0027 26.3 9.6 23 622-644 6-28 (75)
434 PF10212 TTKRSYEDQ: Predicted 57.5 2.2E+02 0.0049 34.0 14.5 15 142-156 106-120 (518)
435 PF04880 NUDE_C: NUDE protein, 57.5 16 0.00035 36.9 4.7 21 661-681 27-47 (166)
436 PF08581 Tup_N: Tup N-terminal 57.5 1.4E+02 0.003 26.4 12.2 65 618-682 6-74 (79)
437 PF13747 DUF4164: Domain of un 57.5 1.5E+02 0.0032 26.8 11.4 43 635-677 37-79 (89)
438 PF14073 Cep57_CLD: Centrosome 57.2 2.3E+02 0.005 29.0 20.1 17 563-579 74-90 (178)
439 PF05262 Borrelia_P83: Borreli 56.9 4.2E+02 0.0091 31.9 17.2 8 285-292 24-31 (489)
440 PF05529 Bap31: B-cell recepto 56.6 70 0.0015 33.2 9.6 28 652-679 162-189 (192)
441 KOG4427 E3 ubiquitin protein l 56.6 15 0.00033 44.7 4.9 18 399-416 31-48 (1096)
442 PF01166 TSC22: TSC-22/dip/bun 56.3 16 0.00034 29.8 3.4 31 658-688 14-44 (59)
443 cd00584 Prefoldin_alpha Prefol 56.3 1.9E+02 0.0041 27.7 12.3 31 656-686 92-122 (129)
444 PF05335 DUF745: Protein of un 56.0 2.6E+02 0.0056 29.1 17.1 59 617-675 110-168 (188)
445 PF06632 XRCC4: DNA double-str 55.8 1.8E+02 0.0038 33.3 13.1 28 626-653 154-181 (342)
446 PF03962 Mnd1: Mnd1 family; I 54.9 2.7E+02 0.0058 29.0 15.3 25 652-676 143-167 (188)
447 smart00502 BBC B-Box C-termina 54.7 1.9E+02 0.004 27.1 16.1 21 612-632 75-95 (127)
448 PF13094 CENP-Q: CENP-Q, a CEN 54.7 98 0.0021 31.1 10.0 62 626-687 23-84 (160)
449 PF06156 DUF972: Protein of un 54.4 83 0.0018 29.5 8.5 16 670-685 34-49 (107)
450 PRK10361 DNA recombination pro 54.0 4.6E+02 0.0099 31.4 28.8 22 622-643 139-160 (475)
451 KOG1937 Uncharacterized conser 53.9 4.2E+02 0.0092 31.0 25.9 46 511-556 332-377 (521)
452 KOG4196 bZIP transcription fac 53.6 1.8E+02 0.0039 28.0 10.5 38 529-577 75-112 (135)
453 KOG1850 Myosin-like coiled-coi 53.6 3.6E+02 0.0077 30.1 33.4 41 607-647 227-267 (391)
454 PF15188 CCDC-167: Coiled-coil 53.1 74 0.0016 28.4 7.5 59 616-681 5-66 (85)
455 COG1730 GIM5 Predicted prefold 52.7 2.5E+02 0.0053 27.9 13.9 40 608-647 93-132 (145)
456 PF14282 FlxA: FlxA-like prote 52.6 84 0.0018 29.4 8.4 31 656-686 49-79 (106)
457 PF14988 DUF4515: Domain of un 52.4 3.1E+02 0.0067 29.0 26.0 19 524-542 74-92 (206)
458 PF07058 Myosin_HC-like: Myosi 52.2 1.4E+02 0.0031 32.8 10.9 73 613-685 4-86 (351)
459 TIGR00414 serS seryl-tRNA synt 51.8 94 0.002 36.7 10.6 81 608-691 29-109 (418)
460 KOG0162 Myosin class I heavy c 51.4 42 0.0009 41.0 7.4 34 466-499 691-724 (1106)
461 PLN02320 seryl-tRNA synthetase 51.4 84 0.0018 37.7 10.1 78 609-691 93-170 (502)
462 TIGR02894 DNA_bind_RsfA transc 51.3 1.1E+02 0.0024 30.7 9.2 18 616-633 104-121 (161)
463 PF02996 Prefoldin: Prefoldin 51.2 1E+02 0.0022 29.1 9.1 42 645-686 78-119 (120)
464 KOG0942 E3 ubiquitin protein l 51.2 17 0.00036 45.5 4.3 29 466-494 24-52 (1001)
465 PF09731 Mitofilin: Mitochondr 51.0 5.6E+02 0.012 31.6 25.6 11 797-807 525-535 (582)
466 KOG4001 Axonemal dynein light 50.6 1.5E+02 0.0032 30.6 10.1 68 608-675 184-252 (259)
467 PF07058 Myosin_HC-like: Myosi 50.6 3.9E+02 0.0085 29.6 18.4 134 531-682 3-160 (351)
468 PF11365 DUF3166: Protein of u 50.4 95 0.002 28.5 7.9 76 609-684 1-95 (96)
469 TIGR02231 conserved hypothetic 50.4 1.4E+02 0.0031 36.3 12.4 77 608-684 77-171 (525)
470 PF10779 XhlA: Haemolysin XhlA 50.4 90 0.002 26.8 7.6 51 625-675 1-51 (71)
471 PF12795 MscS_porin: Mechanose 50.3 3.6E+02 0.0077 29.1 21.1 168 509-687 26-214 (240)
472 COG2900 SlyX Uncharacterized p 50.3 1.5E+02 0.0032 25.6 8.4 61 634-694 5-65 (72)
473 PF07851 TMPIT: TMPIT-like pro 50.1 1.5E+02 0.0033 33.5 11.3 73 613-685 1-81 (330)
474 PRK15178 Vi polysaccharide exp 50.0 5E+02 0.011 30.7 16.7 136 527-687 222-366 (434)
475 KOG3478 Prefoldin subunit 6, K 49.8 2.2E+02 0.0048 26.6 13.9 101 583-693 3-118 (120)
476 PF09763 Sec3_C: Exocyst compl 49.7 6.5E+02 0.014 31.9 23.2 273 608-976 4-344 (701)
477 TIGR02894 DNA_bind_RsfA transc 49.6 1.2E+02 0.0026 30.4 9.2 56 612-667 100-155 (161)
478 PF04437 RINT1_TIP1: RINT-1 / 49.1 1.3E+02 0.0027 36.5 11.5 114 890-1013 306-420 (494)
479 PF14712 Snapin_Pallidin: Snap 49.0 2E+02 0.0043 25.8 11.1 77 610-686 15-92 (92)
480 COG5185 HEC1 Protein involved 48.8 5.1E+02 0.011 30.5 25.8 207 471-687 200-418 (622)
481 PF02841 GBP_C: Guanylate-bind 48.7 4.3E+02 0.0093 29.5 16.5 122 519-678 174-297 (297)
482 PHA02414 hypothetical protein 48.6 1.7E+02 0.0037 26.5 8.9 67 616-682 4-81 (111)
483 PF04899 MbeD_MobD: MbeD/MobD 48.0 1.8E+02 0.0039 25.0 9.6 60 618-677 9-68 (70)
484 COG5570 Uncharacterized small 48.0 35 0.00075 27.1 4.0 54 627-680 2-55 (57)
485 PF06810 Phage_GP20: Phage min 47.6 1.3E+02 0.0027 30.3 9.3 65 616-680 13-84 (155)
486 PF06008 Laminin_I: Laminin Do 47.4 4.2E+02 0.009 29.0 25.2 178 509-686 33-241 (264)
487 PF04912 Dynamitin: Dynamitin 47.3 5.2E+02 0.011 30.1 18.8 143 528-685 209-388 (388)
488 PF04576 Zein-binding: Zein-bi 47.1 2.3E+02 0.0049 25.9 13.1 93 562-688 1-93 (94)
489 PF02050 FliJ: Flagellar FliJ 46.9 2.4E+02 0.0051 26.0 11.4 76 612-687 1-81 (123)
490 PF10779 XhlA: Haemolysin XhlA 46.9 1.3E+02 0.0028 25.8 8.0 50 619-668 2-51 (71)
491 KOG4005 Transcription factor X 46.9 2.7E+02 0.0059 29.5 11.5 94 556-660 55-148 (292)
492 TIGR02971 heterocyst_DevB ABC 46.5 4.7E+02 0.01 29.4 18.0 144 515-676 56-204 (327)
493 KOG4657 Uncharacterized conser 46.4 3.9E+02 0.0084 28.4 17.4 111 563-686 18-128 (246)
494 KOG2072 Translation initiation 46.3 7.3E+02 0.016 31.5 23.2 178 505-683 564-744 (988)
495 TIGR03545 conserved hypothetic 46.2 2.9E+02 0.0063 33.8 13.8 101 560-665 164-269 (555)
496 TIGR02977 phageshock_pspA phag 46.1 3.9E+02 0.0085 28.4 19.8 123 533-675 29-151 (219)
497 PRK11546 zraP zinc resistance 45.9 1.3E+02 0.0029 29.6 8.8 74 615-688 46-119 (143)
498 KOG3859 Septins (P-loop GTPase 45.3 2.8E+02 0.0061 30.5 11.7 75 607-687 325-399 (406)
499 KOG3564 GTPase-activating prot 45.2 2E+02 0.0043 33.8 11.2 96 570-675 13-108 (604)
500 PF10226 DUF2216: Uncharacteri 44.8 3.7E+02 0.0081 27.7 14.7 107 570-686 19-136 (195)
No 1
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=100.00 E-value=1.3e-130 Score=1181.31 Aligned_cols=945 Identities=31% Similarity=0.441 Sum_probs=695.2
Q ss_pred CCCHHHHHHHHhhceEeecCceEEecCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcCCCCCCCcccccccccCCccc
Q 001692 1 MCDAKALEDSLCKREIVTRDETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQDPNSKSLIGVLDIYGFESF 80 (1027)
Q Consensus 1 ~~d~~~l~~~l~~r~~~~~~e~i~~~l~~~~a~~~rdalak~lY~~LF~wlV~~iN~~l~~~~~~~~~IgiLDi~GFE~f 80 (1027)
|||++.|.+||+.|.+.+++|.|.+++|..||..+||||||+||++||+|||++||.+|+..+...+|||||||||||+|
T Consensus 362 gId~~~f~k~lvk~~ikt~~E~i~~~~n~~QA~~irdslAK~lY~~lFdwiV~rIN~sL~~~~~~~~fIGVLDIyGFEiF 441 (1463)
T COG5022 362 GIDPSLFVKWLVKRQIKTGGEWIVVPLNLEQALAIRDSLAKALYSNLFDWIVDRINKSLDHSAAASNFIGVLDIYGFEIF 441 (1463)
T ss_pred CCCHHHHHHHHHHhHhhcCceEEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccceeEEeecchhhh
Confidence 89999999999999999999999999999999999999999999999999999999999877667899999999999999
Q ss_pred cCCchhHhHhhhchHHHHhHHHHhhhhhhHhHhhhcCCccccccccCcHHHHHHhhc-CCcchhhhhHhhhcCCCCChHH
Q 001692 81 KTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEFVDNQDILDLIEK-KPGGIIALLDEACMFPRSTHET 159 (1027)
Q Consensus 81 ~~NsfeqlciNyanEkLq~~f~~~~f~~eq~ey~~E~i~~~~i~~~dn~~~ldli~~-~~~Gil~lLdee~~~~~~td~~ 159 (1027)
+.|||||||||||||||||+||+|||++|||||.+|||+|++|+|.|||+||||||+ .|.|||++|||||.+|.+||++
T Consensus 442 EkNSFEQlCINYtNEKLQQ~Fn~h~FklEQEeY~kE~IeW~~Idy~DnQ~~IDLIE~~~p~GIlslLDEE~~~p~atd~s 521 (1463)
T COG5022 442 EKNSFEQLCINYTNEKLQQFFNQHMFKLEQEEYVKEGIEWSFIDYFDNQPCIDLIEKKNPLGILSLLDEECVMPHATDES 521 (1463)
T ss_pred ccCcHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCcccccccccCcchhHHHhccCCCchHhhhcHHhcCCCCCchH
Confidence 999999999999999999999999999999999999999999999999999999998 3559999999999999999999
Q ss_pred HHHHHHHHhc--CCCCCCCCCCCCCCeEEEeeccceeEeccchhhhhcchhhHHHHHHHhhcCCccccccccccchhccC
Q 001692 160 FAQKLYQTFK--NHKRFSKPKLARSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCSFVSSLFLPLAEESSK 237 (1027)
Q Consensus 160 ~~~kl~~~~~--~~~~~~~~~~~~~~F~i~H~ag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~~~~~ 237 (1027)
|.+||++.+. +++.|.+||++...|+|+||||+|+|+++||++||+|++++++++|+.+|+|+|+..||+... ...+
T Consensus 522 ~~sKL~~~l~~~~~~~f~~~rf~~~~FvvkHYAgDVeY~veg~ldKNkD~l~~~ll~Ll~~StNe~vs~Lf~~~~-~~~~ 600 (1463)
T COG5022 522 FTSKLAQRLNKNSNPKFKKSRFRDNKFVVKHYAGDVEYDVEGFLDKNKDPLNDDLLELLKASTNEFVSTLFDDEE-NIES 600 (1463)
T ss_pred HHHHHHHHhccccCccccccccCCCceEEEeecccceeeccchhhhCcchhhHHHHHHHhhccchHHHHhhhhhh-hccc
Confidence 9999999886 568899999999999999999999999999999999999999999999999999999999543 3334
Q ss_pred CCCCcchhHHHHHHHHHHHHHhccCCCeeeEecCCCCCCCCCcccccchhhhhhccchhhHHHHHhhCCCCccChHHHHH
Q 001692 238 TSKFSSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVMEAIRISCAGYPTRKPFDEFVD 317 (1027)
Q Consensus 238 ~~~~~tv~~~f~~~l~~L~~~l~~t~~hfIrCikpN~~~~~~~fd~~~V~~QLr~~gvle~iri~~~Gyp~r~~~~~F~~ 317 (1027)
.++++|+|++||.||++||++|++|+||||||||||++|+|+.||+.+|++|||||||+|+|||+|+|||+|++|++|+.
T Consensus 601 K~~~pT~gs~~K~sl~~Lm~tl~sTqphyIRCIkPN~~K~p~~fD~~mVL~QLr~~GVlE~IRIsraGFP~R~~f~EFv~ 680 (1463)
T COG5022 601 KGRFPTLGSRFKESLNSLMSTLNSTQPHYIRCIKPNEEKSPWTFDNQMVLSQLRCCGVLETIRISRAGFPSRWTFDEFVQ 680 (1463)
T ss_pred cCCCCcHHHHHHHHHHHHHHHHHhcCCceeEeeCCCcccCccccchHHHHHHHHhcchhhheeeccccCchhhhHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhcccCC-----CCccHHHHHHHHHhhcCCC--CceeccceeeecccccccccchhhhcchhhHHHHHHHhhhccc
Q 001692 318 RFGILASKVLD-----GSSDEVTACKRLLEKVGLE--GYQIGKTKVFLRAGQMADLDARRTEVLGRSASIIQRKVRSYLS 390 (1027)
Q Consensus 318 ry~~l~~~~~~-----~~~~~~~~~~~il~~~~~~--~~~iG~TkVFlr~~~~~~Le~~r~~~l~~aa~~IQ~~~R~~l~ 390 (1027)
||++|.|.... +..|.+.+|..||..+.+| .||+|+||||||+|+++.||.+|...++.+++.||+.|||++.
T Consensus 681 RY~IL~p~~~~~~~~~~~~~~~~~~~~IL~~~~id~~~YqiG~TKvFfKagvL~~LE~~Rd~~~~~~~~~iq~aiR~~~~ 760 (1463)
T COG5022 681 RYRILSPSKSWTGEYTWKEDTKNAVKSILEELVIDSSKYQIGNTKVFFKAGVLAALEDMRDAKLDNIATRIQRAIRGRYL 760 (1463)
T ss_pred HHHHhcccccccccccchhHHHHHHHHHHHhhcCChhheeccceeEEeeCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999997432 2246899999999998776 6999999999999999999999999999999999999999999
Q ss_pred chhhhhhchhhHHHHHHHHhhhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 001692 391 RKNYIMLRRSAIHIQAACRGQLARTVYESMRREASCLRIQRDLRMYLAKKAYKDMCFSAVCIQ-TGMRGMAARNELRFRR 469 (1027)
Q Consensus 391 R~~y~~~r~a~i~iQ~~~Rg~laR~~~~~~r~~~Aai~IQ~~~R~~~~rk~y~~~r~a~~~iQ-s~~Rg~~aR~~~~~~r 469 (1027)
|++|.+....+..+|...+|++.++....--...+++.+|..||....|+.|...-..++.+| ..+|+...+.......
T Consensus 761 rrr~~~~~k~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~r~~~~~~~~~i~~lq~~i~~~~~~~~~~e~~~ 840 (1463)
T COG5022 761 RRRYLQALKRIKKIQVIQHGFRLRRLVDYELKWRLFIKLQPLLSLLGSRKEYRSYLACIIKLQKTIKREKKLRETEEVEF 840 (1463)
T ss_pred HHHHHHHHHHHHHHHHHhcccchhhhcccchHHHhHHHhhHHhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 999999999999999999999999877766667799999999999999999999999999999 7788887777667777
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001692 470 QTRASILIQSHCRKYLARLHYMKLKKAAITTQCAWRGKVARRELRKLKMAARETGALQAAKNKLEKQVEELTWRLQLEKR 549 (1027)
Q Consensus 470 ~~~aa~~IQ~~~R~~~~r~~~~~~~~a~i~iQ~~~R~~~arkel~~l~~~a~~~~~L~~~k~~LE~kv~el~~rl~~e~~ 549 (1027)
..++++.+|++||.+..+.+|..+.+.++.+|+.+|...|++++..++.+.+++..+.....+|+.++.++...+.....
T Consensus 841 ~~~~~~L~~~~~rs~~~~kr~~~L~k~~i~~~~~~r~~~a~r~~~e~k~~~~~~~~l~~~~~~l~~~~~el~~~~~s~~~ 920 (1463)
T COG5022 841 SLKAEVLIQKFGRSLKAKKRFSLLKKETIYLQSAQRVELAERQLQELKIDVKSISSLKLVNLELESEIIELKKSLSSDLI 920 (1463)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHhhccchhhh
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999876662111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchh---hHHHHHHHHHHHHHHHHHHH
Q 001692 550 MRVDMEEAKTQENAKLQSALQEMQLQFKESKEKLMKEIEVAKKEAEKVPVVQEVPVI---DHAVVEELTSENEKLKTLVS 626 (1027)
Q Consensus 550 ~~~ele~~~~~e~~~L~~~l~~le~~l~~~~~~l~~e~~~~~~~~ee~~~~~e~~~~---~~~~~~~L~~e~~kLe~~l~ 626 (1027)
.+.++ +.+....|+.-+.. . .+++.+.. ...++..|.....+|++...
T Consensus 921 ~~~~~---k~e~~a~lk~~l~~-------~-------------------d~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~ 971 (1463)
T COG5022 921 ENLEF---KTELIARLKKLLNN-------I-------------------DLEEGPSIEYVKLPELNKLHEVESKLKETSE 971 (1463)
T ss_pred hhhHH---HHHHHHHHHHHhhc-------c-------------------cccchhHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 11100 00111111111111 0 00000000 11234444445555444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH---HHHHHHhccccCcccccccccCC
Q 001692 627 SLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETE---NQILRQQSLLSTPIKKMSEHISA 703 (1027)
Q Consensus 627 ~l~~~l~elek~~~ele~~~~~~~~~l~~~~~~~~~l~~~~~~Lee~l~~le~e---~~~L~qq~~~~~~~~~~~~~~~~ 703 (1027)
+....+...+....+...... +++.....+.....+...+.+..+.++.. +..+.......+ ......+.
T Consensus 972 ~~~~~~k~~~~~~~~~~~~~~----el~~~~~~l~~~~~~~~~l~~~~~~lk~~~~~~~~l~~~~~~~~---s~~~~~~~ 1044 (1463)
T COG5022 972 EYEDLLKKSTILVREGNKANS----ELKNFKKELAELSKQYGALQESTKQLKELPVEVAELQSASKIIS---SESTELSI 1044 (1463)
T ss_pred HHHHHHHHhhHHHHhcccHHH----HHHHHHHHHHHHHhhhhhhhhhhhhcccccchhhhhhhhhhhhc---cchhhhhc
Confidence 444333333222222222222 22222222222222222233333333322 333322111110 00000000
Q ss_pred CcccCCCCC--CCcccc-cCCCCCCCCCCcccCCCCcchHhhhhhhhhhhhhHHHHHHHhh-hccCCC-CCCchhHHHHH
Q 001692 704 PATQSLENG--HHVIEE-NISNEPQSATPVKKLGTESDSKLRRSHIEHQHENVDALINCVA-KNLGYC-NGKPVAAFTIY 778 (1027)
Q Consensus 704 ~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~e~~~~Ll~~i~-~~~~~~-~~~p~pA~ii~ 778 (1027)
+.......+ ...... .+... ........ . ..-....+..+....+++.+. .++.+. ...+.||..+.
T Consensus 1045 ~~~~~~~~~~~~~~~~~l~~~~~---~l~~~r~~---~--~~~~~q~~~~e~t~~~~~~i~~~~~~~~~~~~~~~~~~~~ 1116 (1463)
T COG5022 1045 LKPLQKLKGLLLLENNQLQARYK---ALKLRREN---S--LLDDKQLYQLESTENLLKTINVKDLEVTNRNLVKPANVLQ 1116 (1463)
T ss_pred cCcccchhhhhhHHHHHhhhhHh---hhhhcCcc---c--chhHHHHHHHHhhhhhhhhhccchhhhhcccccchhhHHH
Confidence 000000000 000000 00000 00000000 0 000011344667777777776 444333 23334666665
Q ss_pred HHHh-hhhh-hhhhhhHHHHHHHHHHHHhhc---ccCCCcccchhhhhHHHHHHHHHHHHhhcCCCCCCCCCCCCCcccc
Q 001692 779 KCLL-HWKS-FEAERTSVFDRLIQMIGSAIE---NEDDNDHMAYWLSNTSTLLFLLQRSLKAAGASGATPHKKPPTATSL 853 (1027)
Q Consensus 779 ~c~~-~~~~-~~~~~~~ll~~i~~~I~~~i~---~~~~~~~lafWLsN~~~Ll~~lq~~~~~~~~~~~~~~~~~~~~~~~ 853 (1027)
..+. +|+. ...+...++...+..+..+.. +.+-...+.||.+|...+++.- ......+.+ ..
T Consensus 1117 ~~~~~~~k~~l~~~~~~~~~~~~~~le~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-------~~~~~~~~~------~~ 1183 (1463)
T COG5022 1117 FIVAQMIKLNLLQEISKFLSQLVNTLEPVFQKLSVLQLELDGLFWEANLEALPSPP-------PFAALSEKR------LY 1183 (1463)
T ss_pred HHHHHhhccchHHhhhhHHHHHHhhccchhccccchhccccccccccccccCCCCC-------chhhcchhh------hh
Confidence 5444 8877 555666666666666666543 3344556789999998876310 000000000 00
Q ss_pred hhhcccccCCCCCchhhhhhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCCCC-Cc
Q 001692 854 FGRMAMGFRSSPSSANLAAAAALAVVRQVEAKYPALLFKQQLAAYVEKIYGIIRDNLKKELSSLLSLCIQAPRTSKG-SV 932 (1027)
Q Consensus 854 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~f~q~L~~~~~~iy~~l~~~~~k~L~~~l~~~i~~~~~~~~-~~ 932 (1027)
+..+. .+.+. .+ ..++. ..+..|..+..++|..|.... .+.+++.........+.+ .+
T Consensus 1184 ~~~~~-d~~~~--------~s-~s~v~---------~l~~~l~~~~~~~~~~~~~~~--~~~~~~~e~~~~~~~~~~~~~ 1242 (1463)
T COG5022 1184 QSALY-DEKSK--------LS-SSEVN---------DLKNELIALFSKIFSGWPRGD--KLKKLISEGWVPTEYSTSLKG 1242 (1463)
T ss_pred Hhhhh-ccccc--------cc-HHHHH---------HHHHHHHHHHHhccccchhhh--hhhhhhhhccchhhhcccccc
Confidence 00000 00000 00 11222 333455666788888887765 333333211110001000 00
Q ss_pred ccCCCCCCCCCccccHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhHHHhHhhhhcCCCCCCchhhHHhhchhH
Q 001692 933 LRSGRSFGKDSASSHWQSIIDSLNTLLSTLKQNFVPPVLVQKIFTQTFSYINVQLFNSLLLRRECCTFSNGEYVKAGLAE 1012 (1027)
Q Consensus 933 ~~~~~~~~~~~~~~~~~~il~~L~~~~~~l~~~~v~~~l~~Q~f~Qlf~~in~~lfN~Ll~r~~~cs~s~g~qIr~nls~ 1012 (1027)
...+......+...+.++++.+++++.+++..+.+.+.+..-.+.++.-++|+.+||.|.+|.....|+.|.++.+|.+.
T Consensus 1243 ~~~~~~~~~~~~~~~~~~ll~~~n~i~~~~~s~~~~~~~~~~~i~~~~~~~~~~~~n~L~~~~~~~~~k~~~~~~~n~~~ 1322 (1463)
T COG5022 1243 FNNLNKKFDTPASMSNEKLLSLLNSIDNLLSSYKLEEEVLPATINSLLQYINVGLFNALRTKASSLRWKSATEVNYNSEE 1322 (1463)
T ss_pred ccchhhcccCcccCcHHHHHHHHHHHHHHHHHhhcchhhhhHHHHhHhhhcchhhhhhhhcccCccchhhcccccccchh
Confidence 00001112245667888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhcc
Q 001692 1013 LELWCCQAKEEV 1024 (1027)
Q Consensus 1013 Le~W~~~~~~e~ 1024 (1027)
+++||+.+|...
T Consensus 1323 ~~~w~~~~~i~~ 1334 (1463)
T COG5022 1323 LDDWCREFEISD 1334 (1463)
T ss_pred hhHHHHhhcccc
Confidence 999999998654
No 2
>PTZ00014 myosin-A; Provisional
Probab=100.00 E-value=1.2e-106 Score=983.09 Aligned_cols=416 Identities=33% Similarity=0.540 Sum_probs=391.7
Q ss_pred CCCHHHHHHHHhhceEeecCceEEecCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcCCCCCCCcccccccccCCccc
Q 001692 1 MCDAKALEDSLCKREIVTRDETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQDPNSKSLIGVLDIYGFESF 80 (1027)
Q Consensus 1 ~~d~~~l~~~l~~r~~~~~~e~i~~~l~~~~a~~~rdalak~lY~~LF~wlV~~iN~~l~~~~~~~~~IgiLDi~GFE~f 80 (1027)
|||+++|.++||+|++.+++|.|++++++++|..+||||||+||++||+|||.+||.+|.++.....+||||||||||+|
T Consensus 396 gv~~~~L~~~L~~~~~~~~~e~i~~~~~~~qA~~~rdalaK~lY~rLF~wiV~~IN~~l~~~~~~~~~IGiLDI~GFE~f 475 (821)
T PTZ00014 396 FLDYESLKKELTVKVTYAGNQKIEGPWSKDESEMLKDSLSKAVYEKLFLWIIRNLNATIEPPGGFKVFIGMLDIFGFEVF 475 (821)
T ss_pred CCCHHHHHHHhhceEEEeCCeeEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCceEEEEeccccccc
Confidence 79999999999999999999999999999999999999999999999999999999999877667889999999999999
Q ss_pred cCCchhHhHhhhchHHHHhHHHHhhhhhhHhHhhhcCCccccccccCcHHHHHHhhcCCcchhhhhHhhhcCCCCChHHH
Q 001692 81 KTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEFVDNQDILDLIEKKPGGIIALLDEACMFPRSTHETF 160 (1027)
Q Consensus 81 ~~NsfeqlciNyanEkLq~~f~~~~f~~eq~ey~~E~i~~~~i~~~dn~~~ldli~~~~~Gil~lLdee~~~~~~td~~~ 160 (1027)
+.|||||||||||||||||+||+|||+.||++|.+|||+|++|+|.||++|||||++||.|||++|||||++|++||++|
T Consensus 476 ~~NSfEQLcINy~NEkLQq~F~~~vF~~EqeeY~~EgI~~~~i~f~dN~~~idLie~k~~GIl~lLDEec~~p~~tD~~f 555 (821)
T PTZ00014 476 KNNSLEQLFINITNEMLQKNFVDIVFERESKLYKDEGISTEELEYTSNESVIDLLCGKGKSVLSILEDQCLAPGGTDEKF 555 (821)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCcHHHHHHHhcCCccHHHHHHHHhCCCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCCCCC-CCCCeEEEeeccceeEeccchhhhhcchhhHHHHHHHhhcCCccccccccccchhccCCC
Q 001692 161 AQKLYQTFKNHKRFSKPKL-ARSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCSFVSSLFLPLAEESSKTS 239 (1027)
Q Consensus 161 ~~kl~~~~~~~~~~~~~~~-~~~~F~i~H~ag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~~~~~~~ 239 (1027)
++||++++++|++|.+|+. ....|+|+||||+|+|+++||++||+|.++++++++|++|+++||+.||+......++..
T Consensus 556 ~~kl~~~~~~~~~f~~~~~~~~~~F~I~HyAG~V~Y~~~gfleKNkD~l~~~~~~ll~~S~n~~i~~lf~~~~~~~~~~~ 635 (821)
T PTZ00014 556 VSSCNTNLKNNPKYKPAKVDSNKNFVIKHTIGDIQYCASGFLFKNKDVLRPELVEVVKASPNPLVRDLFEGVEVEKGKLA 635 (821)
T ss_pred HHHHHHHhcCCCCccCCCCCCCCceEEEEeceeeeeccCcHHHhccccchHHHHHHHHhCccHHHHHHhccccccccccc
Confidence 9999999999999999885 457999999999999999999999999999999999999999999999986543333344
Q ss_pred CCcchhHHHHHHHHHHHHHhccCCCeeeEecCCCCCCCCCcccccchhhhhhccchhhHHHHHhhCCCCccChHHHHHHH
Q 001692 240 KFSSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVMEAIRISCAGYPTRKPFDEFVDRF 319 (1027)
Q Consensus 240 ~~~tv~~~f~~~l~~L~~~l~~t~~hfIrCikpN~~~~~~~fd~~~V~~QLr~~gvle~iri~~~Gyp~r~~~~~F~~ry 319 (1027)
+.+||+++|+.||+.||++|++|+||||||||||+.++|+.||..+|++||||+||||+|||+++|||+|++|.+|+.||
T Consensus 636 k~~tv~s~Fk~qL~~Lm~~L~~t~phfIRCIKPN~~k~p~~fd~~~V~~QLr~~GvLE~iri~r~Gyp~R~~f~~F~~rY 715 (821)
T PTZ00014 636 KGQLIGSQFLNQLDSLMSLINSTEPHFIRCIKPNENKKPLDWNSSKVLIQLHSLSILEALQLRQLGFSYRRTFAEFLSQF 715 (821)
T ss_pred CCCcHHHHHHHHHHHHHHHHhccCCeEEEEeCcCcccCccccchHhHHHHhhhhhHHHHHHHHhcCCcccccHHHHHHHH
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcccCCC-CccHHHHHHHHHhhcCC--CCceeccceeeecccccccccchhhhcch---hhHHHHHHHhhhcccchh
Q 001692 320 GILASKVLDG-SSDEVTACKRLLEKVGL--EGYQIGKTKVFLRAGQMADLDARRTEVLG---RSASIIQRKVRSYLSRKN 393 (1027)
Q Consensus 320 ~~l~~~~~~~-~~~~~~~~~~il~~~~~--~~~~iG~TkVFlr~~~~~~Le~~r~~~l~---~aa~~IQ~~~R~~l~R~~ 393 (1027)
++|.+..... ..|+++.|+.||..+++ ++|++|+||||||++++..||..|.+++. .+++.||++||||++|++
T Consensus 716 ~~L~~~~~~~~~~d~k~~~~~il~~~~l~~~~~~iGkTKVFlr~~~~~~Le~~~~~~~~~~~~~~~~iq~~~r~~~~r~~ 795 (821)
T PTZ00014 716 KYLDLAVSNDSSLDPKEKAEKLLERSGLPKDSYAIGKTMVFLKKDAAKELTQIQREKLAAWEPLVSVLEALILKIKKKRK 795 (821)
T ss_pred HhcCcccccCCCCCHHHHHHHHHHHcCCCcccEEecCCeEEEcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998875433 45899999999999876 48999999999999999999998887764 578899999999999999
Q ss_pred hhhhchhhHHHHHHHHhhhhhhh
Q 001692 394 YIMLRRSAIHIQAACRGQLARTV 416 (1027)
Q Consensus 394 y~~~r~a~i~iQ~~~Rg~laR~~ 416 (1027)
|.+++.+++.||+++|||++++.
T Consensus 796 ~~~~~~~~~~iQ~~~R~~l~~~~ 818 (821)
T PTZ00014 796 VRKNIKSLVRIQAHLRRHLVIAE 818 (821)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999988754
No 3
>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton]
Probab=100.00 E-value=7e-103 Score=925.30 Aligned_cols=457 Identities=61% Similarity=0.961 Sum_probs=439.9
Q ss_pred CCCHHHHHHHHhhceEeecCceEEecCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcCC-CCCCCcccccccccCCcc
Q 001692 1 MCDAKALEDSLCKREIVTRDETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQ-DPNSKSLIGVLDIYGFES 79 (1027)
Q Consensus 1 ~~d~~~l~~~l~~r~~~~~~e~i~~~l~~~~a~~~rdalak~lY~~LF~wlV~~iN~~l~~-~~~~~~~IgiLDi~GFE~ 79 (1027)
|||++.|..||+.|.+.++++.|+++++..+|...||++||.||++||+|+|+.||.+|+. ++.+..+||||||||||+
T Consensus 301 g~~~~~l~~~L~~r~i~~~~e~i~k~l~~~qa~~~rD~lak~iys~LFdwlV~~in~sL~~~~~~~~~~igVLDiYgFEs 380 (862)
T KOG0160|consen 301 GCDEEALEQWLSKRKILTARESIVKPLTLSQAVKRRDALAKQLYSLLFDWLVAKINGSLGANDPKAERFIGVLDIYGFES 380 (862)
T ss_pred CCCHHHHHHHHHHHHhhcccceeecccCHHHHHHhhhhhHHHHHHHHHHHHHHHhhcccccCCCCccceeeeehcccccc
Confidence 8999999999999999999999999999999999999999999999999999999999986 555689999999999999
Q ss_pred ccCCchhHhHhhhchHHHHhHHHHhhhhhhHhHhhhcCCccccccccCcHHHHHHhhcCCcchhhhhHhhhcCCCCChHH
Q 001692 80 FKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEFVDNQDILDLIEKKPGGIIALLDEACMFPRSTHET 159 (1027)
Q Consensus 80 f~~NsfeqlciNyanEkLq~~f~~~~f~~eq~ey~~E~i~~~~i~~~dn~~~ldli~~~~~Gil~lLdee~~~~~~td~~ 159 (1027)
|+.|||||||||||||||||+||+|||++||++|.+|||+|+.|+|.||++|+++|++ |.|+++||||+|++|.++|++
T Consensus 381 F~~nsfeQfcINyanEkLqq~fnqHvfk~Eqeey~~e~i~Ws~ief~dNq~~~~lie~-~~Gi~~Llde~c~lp~~t~~~ 459 (862)
T KOG0160|consen 381 FEVNSFEQFCINYANEKLQQQFNQHVFKLEQEEYTKEEIDWSGIEFRDNQECLDLIEK-PLGILALLDEECMLPKGTDET 459 (862)
T ss_pred cccCcHHHhhhhhHHHHhhHHHHHHHHHHHHHHHHhhccccccccCcCccchhhhhcc-ccchhhccchhccCCCCCcch
Confidence 9999999999999999999999999999999999999999999999999999999999 789999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCCCCCCCCCeEEEeeccceeEeccchhhhhcchhhHHHHHHHhhcCCccccccccccchhccCCC
Q 001692 160 FAQKLYQTFKNHKRFSKPKLARSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCSFVSSLFLPLAEESSKTS 239 (1027)
Q Consensus 160 ~~~kl~~~~~~~~~~~~~~~~~~~F~i~H~ag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~~~~~~~ 239 (1027)
|..||++.+.+|+.|.+|+.++..|+|.||||+|+|++.+|++||+|+|++++.+++..|+|+|+..+|++...+..+.+
T Consensus 460 ~a~KL~~~~~~~~~f~kpr~~~~~f~v~hyAg~v~y~~~~fL~knrd~v~~el~~ll~~s~~~~~~~~~~~~~~~~~~~~ 539 (862)
T KOG0160|consen 460 LAQKLYQTLKRNKRFTKPRLSRTDFRVAHYAGDVTYDTEGFLEKNRDYVSDELIDLLLASDCHFVAGLAPPLRADSSAKS 539 (862)
T ss_pred HHHHHHHHhccCCccCCCCCCcCCcccccccCccccchhhhccCCccccCHHHHhhhhhcccchHHHhccchhcchhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999997665555566
Q ss_pred CCcchhHHHHHHHHHHHHHhccCCCeeeEecCCCCCCCCCcccccchhhhhhccchhhHHHHHhhCCCCccChHHHHHHH
Q 001692 240 KFSSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVMEAIRISCAGYPTRKPFDEFVDRF 319 (1027)
Q Consensus 240 ~~~tv~~~f~~~l~~L~~~l~~t~~hfIrCikpN~~~~~~~fd~~~V~~QLr~~gvle~iri~~~Gyp~r~~~~~F~~ry 319 (1027)
+++||+++|+.+|..||++|++|.||||||||||..+.|+.||+.+|++|||+|||||++||+++|||.|++|.||+.||
T Consensus 540 ~~~tv~s~fk~~l~~Lm~~l~~t~phyircikPn~~~~p~~fe~~~v~~Qlr~~GvLetiRiS~~g~P~r~~~~Ef~~r~ 619 (862)
T KOG0160|consen 540 KRSTVGSQFKLQLISLMETLNSTPPHYIRCIKPNAEKKPQIFENNLVLQQLRCCGVLETIRISCAGFPTRWTFIEFVNRY 619 (862)
T ss_pred hcccHHHHHHHHHHHHHHHhcCCCCCCceeeCcchhcccccccccceeeeccccceehhheeccccCCccccHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcccCCCCccHHHHHHHHHhhcCCCCceeccceeeecccccccccchhhhcchhhHHHHHHHhhhcccchhhhhhch
Q 001692 320 GILASKVLDGSSDEVTACKRLLEKVGLEGYQIGKTKVFLRAGQMADLDARRTEVLGRSASIIQRKVRSYLSRKNYIMLRR 399 (1027)
Q Consensus 320 ~~l~~~~~~~~~~~~~~~~~il~~~~~~~~~iG~TkVFlr~~~~~~Le~~r~~~l~~aa~~IQ~~~R~~l~R~~y~~~r~ 399 (1027)
++|+| .. ...|++..|+.||+..+++.||+|+||||+++|+++.||.+|..++..+++.||+.+|+|+.|+.|..+|+
T Consensus 620 ~~L~~-~~-~~~~~~~~~~~il~~~~~~~yq~g~tkif~r~gq~~~le~~R~~vl~~~~~~iq~~~r~~~~r~~f~~~r~ 697 (862)
T KOG0160|consen 620 GILMP-ND-SASDDLSLCKVILEKLGLELYQIGKTKIFLRAGQIAVLEARRSDVLSAAKVLIQRQIRGYLARKKFLQLRS 697 (862)
T ss_pred hhcCc-ch-hcccchHHHHHHHHHhchhceeeeeeeeeeccchhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999 33 23456999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHhhhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001692 400 SAIHIQAACRGQLARTVYESMRREASCLRIQRDLRMYLAKKAYKDMCFSAVCIQTGMRGMAARN 463 (1027)
Q Consensus 400 a~i~iQ~~~Rg~laR~~~~~~r~~~Aai~IQ~~~R~~~~rk~y~~~r~a~~~iQs~~Rg~~aR~ 463 (1027)
+++.||+.+||+++|+ ..+ +..||+.||+.||+|..|+.|..++.+++.+|+.+||+.+|+
T Consensus 698 ~~~~~Q~~~rG~~~r~--~~~-~~~aai~~q~~~r~~~~r~~y~~~~~~~~~~qs~~r~~~~r~ 758 (862)
T KOG0160|consen 698 AVIIIQAYSRGVLARR--ETE-REAAAIGIQKECRSYLNRRRYRALIPASITIQSGVRAMLARN 758 (862)
T ss_pred HHHHHhhhhhHHHHHH--hhH-HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999998 334 778999999999999999999999999999999999999887
No 4
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=100.00 E-value=7.5e-100 Score=960.50 Aligned_cols=658 Identities=34% Similarity=0.535 Sum_probs=530.2
Q ss_pred CCCHHHHHHHHhhceEeecCceEEecCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcCCCCCCCcccccccccCCccc
Q 001692 1 MCDAKALEDSLCKREIVTRDETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQDPNSKSLIGVLDIYGFESF 80 (1027)
Q Consensus 1 ~~d~~~l~~~l~~r~~~~~~e~i~~~l~~~~a~~~rdalak~lY~~LF~wlV~~iN~~l~~~~~~~~~IgiLDi~GFE~f 80 (1027)
||++..|.+++++..+.++++.+.+..+.+|+..+..++||++|+|||.|||.+||.+|+......+|||||||+|||+|
T Consensus 382 g~~~~~~~~al~~priKvg~e~v~k~q~~~q~~~~v~alAk~lYerlF~wlV~riN~sld~~~~~~~fIgvLDiaGFEIf 461 (1930)
T KOG0161|consen 382 GINVEEFLKALLRPRIKVGREWVSKAQNVEQVLFAVEALAKALYERLFGWLVKRINKSLDSKQQRDYFIGVLDIAGFEIF 461 (1930)
T ss_pred CCCHHHHHHHhcccceeccchhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCcceeeeecccccc
Confidence 79999999999999999999999999999999999999999999999999999999999876678899999999999999
Q ss_pred cCCchhHhHhhhchHHHHhHHHHhhhhhhHhHhhhcCCccccccc-cCcHHHHHHhhcCCcchhhhhHhhhcCCCCChHH
Q 001692 81 KTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEF-VDNQDILDLIEKKPGGIIALLDEACMFPRSTHET 159 (1027)
Q Consensus 81 ~~NsfeqlciNyanEkLq~~f~~~~f~~eq~ey~~E~i~~~~i~~-~dn~~~ldli~~~~~Gil~lLdee~~~~~~td~~ 159 (1027)
+.||||||||||+||||||+||+|+|.+||++|.+|||.|++|+| .|-+||||||+++ .||+++|||||++|++||.+
T Consensus 462 e~nSFEQLciNytnEkLQqfFnh~mFvlEqeeY~~EgIew~fidfG~Dlq~~idLIEkp-~Gi~slLdEEc~~PkAtd~t 540 (1930)
T KOG0161|consen 462 EFNSFEQLCINYTNEKLQQFFNHHMFVLEQEEYQREGIEWDFIDFGLDLQPTIDLIEKP-MGILSLLDEECVVPKATDKT 540 (1930)
T ss_pred CcCCHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHhCCceeeeccccchhhhHHHHhch-hhHHHHHHHHHhcCCCccch
Confidence 999999999999999999999999999999999999999999999 8999999999985 49999999999999999999
Q ss_pred HHHHHHHHh-cCCCCCCCCC--CCCCCeEEEeeccceeEeccchhhhhcchhhHHHHHHHhhcCCccccccccccch---
Q 001692 160 FAQKLYQTF-KNHKRFSKPK--LARSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCSFVSSLFLPLAE--- 233 (1027)
Q Consensus 160 ~~~kl~~~~-~~~~~~~~~~--~~~~~F~i~H~ag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~--- 233 (1027)
|+.||...| |+||.|.+|+ .....|.|.||||+|.|++.||++||+|++++.++.+|..|++++|+.||.+...
T Consensus 541 f~~kL~~~~~gk~~~f~~~k~~~~~~~F~l~HyaG~V~Y~~~~WL~Knkdpln~~v~~ll~~s~~~~v~~l~~~~~~~~~ 620 (1930)
T KOG0161|consen 541 FLEKLCDQHLGKHPKFQKPKGKKAEAHFALVHYAGTVDYNVDGWLEKNKDPLNDNVVSLLKQSTNKLVSSLFQDYAGAAA 620 (1930)
T ss_pred HHHHHHHHhhccCccccCcccccchhhhheeeecceeccCccchhhcCCCCchHHHHHHHHhcccHHHHHHhhhhhccch
Confidence 999999999 8999999997 4567999999999999999999999999999999999999999999999987311
Q ss_pred --------hccCCCCCcchhHHHHHHHHHHHHHhccCCCeeeEecCCCCCCCCCcccccchhhhhhccchhhHHHHHhhC
Q 001692 234 --------ESSKTSKFSSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVMEAIRISCAG 305 (1027)
Q Consensus 234 --------~~~~~~~~~tv~~~f~~~l~~L~~~l~~t~~hfIrCikpN~~~~~~~fd~~~V~~QLr~~gvle~iri~~~G 305 (1027)
..++++.|.||+..++.+|+.||.+|++|+|||||||.||+.+.|+.+|.++|+.||+|.||||.|||++.|
T Consensus 621 ~~~~~~~~~~~K~g~F~Tvs~~~keql~~Lm~~l~~T~phFvRCiIPn~~K~~g~ld~~lvl~QLrcngVLEgIRicR~G 700 (1930)
T KOG0161|consen 621 AAKGGEALKKTKKGSFRTVSQLYKEQLNKLMTTLRSTHPHFVRCIIPNEEKKPGKLDAPLVLNQLRCNGVLEGIRICRQG 700 (1930)
T ss_pred hhhhhhhhcccCCcchhhHHHHHHHHHHHHHHHhccCCCceeEEeccCccccccccCHHHHHHHhhccCcHHHHHHHHhh
Confidence 123455788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccChHHHHHHHhhhhcccCC-CCccHHHHHHHHHhhcCCC--CceeccceeeecccccccccchhhhcchhhHHHHH
Q 001692 306 YPTRKPFDEFVDRFGILASKVLD-GSSDEVTACKRLLEKVGLE--GYQIGKTKVFLRAGQMADLDARRTEVLGRSASIIQ 382 (1027)
Q Consensus 306 yp~r~~~~~F~~ry~~l~~~~~~-~~~~~~~~~~~il~~~~~~--~~~iG~TkVFlr~~~~~~Le~~r~~~l~~aa~~IQ 382 (1027)
||.|++|.+|..||.++.|...+ +..|.+.+|..|+..+..+ -|++|.||||||+|+++.||.+|...+....+.+|
T Consensus 701 fPnr~~~~eFrqRy~lla~~~~~~~~~d~k~~~~~~~~~l~~d~~lyriG~tKvFfkaGvla~LEe~Rd~~ls~ii~~fQ 780 (1930)
T KOG0161|consen 701 FPNRMPFQEFRQRYELLAADEPKKGFSDGKKACEKILEELLLDKNLYRIGHTKVFFKAGVLAHLEEMRDEKLSQIITLFQ 780 (1930)
T ss_pred CccccchHHHHHhHHhhhhhhccccccccchhHHHHHHHHhcccceEeecceeeeehHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999955555433 3567799999999988654 69999999999999999999999999999999999
Q ss_pred HHhhhcccchhhhhh---chhhHHHHHHHHhhhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001692 383 RKVRSYLSRKNYIML---RRSAIHIQAACRGQLARTVYESMRREASCLRIQRDLRMYLAKKAYKDMCFSAVCIQTGMRGM 459 (1027)
Q Consensus 383 ~~~R~~l~R~~y~~~---r~a~i~iQ~~~Rg~laR~~~~~~r~~~Aai~IQ~~~R~~~~rk~y~~~r~a~~~iQs~~Rg~ 459 (1027)
+.+|||++|+.|.+. ..|+.+||+++|.|+.. |.|.|++.|.++++.+.....-.+..
T Consensus 781 A~~Rg~l~r~~~~kr~~~~~ai~~iQ~N~r~~~~l-------------------r~w~W~~Lf~kvkPLL~~~~~ee~~~ 841 (1930)
T KOG0161|consen 781 AAIRGYLARKEFKKRLQQLDAIKVIQRNIRAYLKL-------------------RTWPWWRLFTKVKPLLKVTKTEEEMR 841 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------------------ccCHHHHHHHHHHHHHHhhhhHHHHH
Confidence 999999999999876 57899999999999764 44556666666665432222111111
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001692 460 AARNELRFRRQTRASILIQSHCRKYLARLHYMKLKKAAITTQCAWRGKVARRELRKLKMAARETGALQAAKNKLEKQVEE 539 (1027)
Q Consensus 460 ~aR~~~~~~r~~~aa~~IQ~~~R~~~~r~~~~~~~~a~i~iQ~~~R~~~arkel~~l~~~a~~~~~L~~~k~~LE~kv~e 539 (1027)
.--.++...+...... ..-|.-+. ....++......+|.. ...+-.....+......+.+.+..+|..+.+
T Consensus 842 ~~~~e~~~l~~~l~~~---e~~~~ele-~~~~~~~~e~~~l~~~-----l~~e~~~~~~aee~~~~~~~~k~~le~~l~~ 912 (1930)
T KOG0161|consen 842 AKEEEIQKLKEELQKS---ESKRKELE-EKLVKLLEEKNDLQEQ-----LQAEKENLAEAEELLERLRAEKQELEKELKE 912 (1930)
T ss_pred HhHHHHHHHHHHHHHH---HHHHHHHH-HHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1001111111000000 00000000 0011111111111111 1112223444566677788888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHhhc
Q 001692 540 LTWRLQLEKRMRVDMEEAKT---QENAKLQSALQEMQLQFKESKEKLMK--------------------EIEVAKKEAEK 596 (1027)
Q Consensus 540 l~~rl~~e~~~~~ele~~~~---~e~~~L~~~l~~le~~l~~~~~~l~~--------------------e~~~~~~~~ee 596 (1027)
++.++..+++....++..+. +++..+.+.+++++..+.+++.+... ++.+.++.+++
T Consensus 913 ~~~~~e~~ee~~~~le~~~~~~~~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~~~e~~~kL~kekk~lEe 992 (1930)
T KOG0161|consen 913 LKERLEEEEEKNAELERKKRKLEQEVQELKEQLEELELTLQKLELEKNAAENKLKNLEEEINSLDENISKLSKEKKELEE 992 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888877777766665333 45556666666666655555433211 22222222222
Q ss_pred c-ccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001692 597 V-PVVQEVPVIDHAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVS 675 (1027)
Q Consensus 597 ~-~~~~e~~~~~~~~~~~L~~e~~kLe~~l~~l~~~l~elek~~~ele~~~~~~~~~l~~~~~~~~~l~~~~~~Lee~l~ 675 (1027)
. ..+.+..+.+++++..|.+.+.+|++++++++..+++.++.+.++++.++++++++..+++.+..++..+.+|+.++.
T Consensus 993 ~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le~e~~~r~e~Ek~~rkle~el~~~~e~~~~~~~~~~el~~~l~ 1072 (1930)
T KOG0161|consen 993 RIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLEREKRIRMELEKAKRKLEGELKDLQESIEELKKQKEELDNQLK 1072 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 2 223333445789999999999999999999999999999999999999999999998888888888888888888888
Q ss_pred hHHHHHHHHHHh
Q 001692 676 DMETENQILRQQ 687 (1027)
Q Consensus 676 ~le~e~~~L~qq 687 (1027)
+.+.|+..++.+
T Consensus 1073 kke~El~~l~~k 1084 (1930)
T KOG0161|consen 1073 KKESELSQLQSK 1084 (1930)
T ss_pred HHHHHHHHHHHH
Confidence 888888766654
No 5
>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new act
Probab=100.00 E-value=8.8e-99 Score=904.24 Aligned_cols=374 Identities=83% Similarity=1.313 Sum_probs=361.3
Q ss_pred CCCHHHHHHHHhhceEeecCceEEecCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcCCCCCCCcccccccccCCccc
Q 001692 1 MCDAKALEDSLCKREIVTRDETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQDPNSKSLIGVLDIYGFESF 80 (1027)
Q Consensus 1 ~~d~~~l~~~l~~r~~~~~~e~i~~~l~~~~a~~~rdalak~lY~~LF~wlV~~iN~~l~~~~~~~~~IgiLDi~GFE~f 80 (1027)
|||+++|.++||+|++.+++|.+++++++++|..+||+|||+||++||+|||.+||.+|+++.....+||||||||||+|
T Consensus 301 gv~~~~L~~~L~~~~~~~~~e~i~~~~~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~IgiLDI~GFE~f 380 (674)
T cd01384 301 MCDEKALEDALCKRVMVTPEEVITKPLDPDSAELSRDALAKTIYSRLFDWLVNKINSSIGQDPDSKSLIGVLDIYGFESF 380 (674)
T ss_pred CCCHHHHHHHhcccEEEeCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEEeccccccc
Confidence 79999999999999999999999999999999999999999999999999999999999987777899999999999999
Q ss_pred cCCchhHhHhhhchHHHHhHHHHhhhhhhHhHhhhcCCccccccccCcHHHHHHhhcCCcchhhhhHhhhcCCCCChHHH
Q 001692 81 KTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEFVDNQDILDLIEKKPGGIIALLDEACMFPRSTHETF 160 (1027)
Q Consensus 81 ~~NsfeqlciNyanEkLq~~f~~~~f~~eq~ey~~E~i~~~~i~~~dn~~~ldli~~~~~Gil~lLdee~~~~~~td~~~ 160 (1027)
+.||||||||||||||||++|++++|+.||++|.+|||+|++|+|.||++|||||+++|.|||++|||||++|++||++|
T Consensus 381 ~~NsfEQLcINyaNEkLQ~~f~~~if~~eq~eY~~EgI~~~~i~~~DN~~~ldLie~~~~Gil~lLdee~~~p~~td~~f 460 (674)
T cd01384 381 KTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYTKEEIDWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETF 460 (674)
T ss_pred CcCCHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccCCChHHHHHHHhcCCccHHHHHHHHHcCCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCCCCCCCCCeEEEeeccceeEeccchhhhhcchhhHHHHHHHhhcCCccccccccccchhccCCCC
Q 001692 161 AQKLYQTFKNHKRFSKPKLARSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCSFVSSLFLPLAEESSKTSK 240 (1027)
Q Consensus 161 ~~kl~~~~~~~~~~~~~~~~~~~F~i~H~ag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~~~~~~~~ 240 (1027)
++||++.+++|++|.+|+.++..|+|+||||+|+|+++||++||+|.++++++++|++|+|++|+.||+..+..+.+.++
T Consensus 461 ~~kl~~~~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~v~gfleKN~D~l~~~~~~ll~~S~n~~i~~lf~~~~~~~~~~~k 540 (674)
T cd01384 461 AQKLYQTFKDHKRFEKPKLSRTAFTIDHYAGDVTYQTDQFLDKNKDYVVAEHQALLNASNCSFVAGLFPPLPEETSKSSK 540 (674)
T ss_pred HHHHHHHhcCCCCCCCCCCCCCeeEEEEecceeeecCCCHHHhcCCcccHHHHHHHHhCchHHHHHHhcccccccccccc
Confidence 99999999999999999988899999999999999999999999999999999999999999999999876555455567
Q ss_pred CcchhHHHHHHHHHHHHHhccCCCeeeEecCCCCCCCCCcccccchhhhhhccchhhHHHHHhhCCCCccChHHHHHHHh
Q 001692 241 FSSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVMEAIRISCAGYPTRKPFDEFVDRFG 320 (1027)
Q Consensus 241 ~~tv~~~f~~~l~~L~~~l~~t~~hfIrCikpN~~~~~~~fd~~~V~~QLr~~gvle~iri~~~Gyp~r~~~~~F~~ry~ 320 (1027)
++||+++|+.||+.||++|++|+||||||||||+.++|+.||...|++||||+||+|+|||+++|||+|++|.+|+.||+
T Consensus 541 ~~tv~~~fk~~L~~L~~~L~~t~~hfIRCIKPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~r~~~~~F~~ry~ 620 (674)
T cd01384 541 FSSIGSRFKQQLQSLMETLSTTEPHYIRCIKPNNVLKPGIFENENVLQQLRCGGVLEAIRISCAGYPTRRTFDEFLDRFG 620 (674)
T ss_pred cccHHHHHHHHHHHHHHHHhccCCeEEEEeCCCcccCCCccCHHHHHHHHHHcchHHHHHHHhcCCCccccHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccCCCCccHHHHHHHHHhhcCCCCceeccceeeecccccccccchhhhcc
Q 001692 321 ILASKVLDGSSDEVTACKRLLEKVGLEGYQIGKTKVFLRAGQMADLDARRTEVL 374 (1027)
Q Consensus 321 ~l~~~~~~~~~~~~~~~~~il~~~~~~~~~iG~TkVFlr~~~~~~Le~~r~~~l 374 (1027)
+|++..+....++++.|+.||..++.++|++|+||||||+++++.||..|.+.+
T Consensus 621 ~L~~~~~~~~~~~~~~~~~il~~~~~~~~~~GktkVFlr~~~~~~LE~~R~~~~ 674 (674)
T cd01384 621 ILAPEVLKGSSDDKAACKKILDKMGLKGYQIGKTKVFLRAGQMAELDARRTEVL 674 (674)
T ss_pred HhCcccccCCCcHHHHHHHHHHhCCCCCEEecCeeEEEcCCHHHHHHHHHHhcC
Confidence 999987766678899999999999999999999999999999999999998753
No 6
>KOG0164 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=100.00 E-value=1.1e-97 Score=829.58 Aligned_cols=434 Identities=39% Similarity=0.666 Sum_probs=399.8
Q ss_pred CCCHHHHHHHHhhceEeecCceEEecCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcCCC-----CCCCccccccccc
Q 001692 1 MCDAKALEDSLCKREIVTRDETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQD-----PNSKSLIGVLDIY 75 (1027)
Q Consensus 1 ~~d~~~l~~~l~~r~~~~~~e~i~~~l~~~~a~~~rdalak~lY~~LF~wlV~~iN~~l~~~-----~~~~~~IgiLDi~ 75 (1027)
++.++.|+++||+|++.++||.+.+++|++||.++||||||++|+|||+|||.+||++|... ......|||||||
T Consensus 304 ~v~~del~~aL~~Rtvaa~~e~v~k~hn~~qA~YaRDAlAKaiY~RlF~Wiv~rIn~~i~~~~~~~~~~~~~Vigvldiy 383 (1001)
T KOG0164|consen 304 SVTGDELERALTSRTVAAGGEIVLKQHNVEQASYARDALAKAIYSRLFTWIVNRINRSIEVKGVITLRKGNTVIGVLDIY 383 (1001)
T ss_pred cCCHHHHHHHHHHHHHHhccchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhheecccccccccCceEEEEEEee
Confidence 46789999999999999999999999999999999999999999999999999999998532 1235789999999
Q ss_pred CCccccCCchhHhHhhhchHHHHhHHHHhhhhhhHhHhhhcCCccccccccCcHHHHHHhhcCCcchhhhhHhhhcCCC-
Q 001692 76 GFESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEFVDNQDILDLIEKKPGGIIALLDEACMFPR- 154 (1027)
Q Consensus 76 GFE~f~~NsfeqlciNyanEkLq~~f~~~~f~~eq~ey~~E~i~~~~i~~~dn~~~ldli~~~~~Gil~lLdee~~~~~- 154 (1027)
|||+|+.||||||||||+||||||.|++-+++.|||||.+|||+|..|+|.+|.-++||+|.+..|||++|||||+.|+
T Consensus 384 gfeif~~NSFEQfcINYCNEKLQQlFIel~LKqEQEEY~rEgI~W~~i~YFnN~iIcdLvE~~~~GIlailDe~Cl~~G~ 463 (1001)
T KOG0164|consen 384 GFEIFQDNSFEQFCINYCNEKLQQLFIELVLKQEQEEYEREGIEWTHIDYFNNKIICDLVEQPHKGILAILDEACLRPGT 463 (1001)
T ss_pred eEEeecCCcHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhcCCCceehhhcCCceeeehhccCccchhhhhhHHhcCCCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999996
Q ss_pred CChHHHHHHHHHHhcCCCCCCCCC-------CCCCCeEEEeeccceeEeccchhhhhcchhhHHHHHHHhhcCCcccccc
Q 001692 155 STHETFAQKLYQTFKNHKRFSKPK-------LARSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCSFVSSL 227 (1027)
Q Consensus 155 ~td~~~~~kl~~~~~~~~~~~~~~-------~~~~~F~i~H~ag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~v~~l 227 (1027)
.||.+|+++|.+.+++|++|..-. .+...|.|.||||+|+|++.||++||+|.+..|+..+|..|+++.+++|
T Consensus 464 vtD~tfL~~l~~~~~~H~Hy~sr~~~~~dksl~~~~Fri~HYAG~V~YsV~gFidKN~D~Lf~dlk~~m~~s~~~~l~~~ 543 (1001)
T KOG0164|consen 464 VTDETFLEKLNQKLKKHPHYTSRKLKQTDKSLGFSDFRITHYAGDVTYSVEGFIDKNNDLLFQDLKRLMYNSKNPLLKSL 543 (1001)
T ss_pred cchHHHHHHHHHHhhhCCcchhhhccccccccCccceeEEEeccceEEEEEeeeccCccHHHHHHHHHHHhcCCchHHHh
Confidence 699999999999999999997432 2346899999999999999999999999999999999999999999999
Q ss_pred ccccchhcc-CCCCCcchhHHHHHHHHHHHHHhccCCCeeeEecCCCCCCCCCcccccchhhhhhccchhhHHHHHhhCC
Q 001692 228 FLPLAEESS-KTSKFSSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVMEAIRISCAGY 306 (1027)
Q Consensus 228 f~~~~~~~~-~~~~~~tv~~~f~~~l~~L~~~l~~t~~hfIrCikpN~~~~~~~fd~~~V~~QLr~~gvle~iri~~~Gy 306 (1027)
|+....+-+ ...+++|+|++|+.|+..||+.|.+-+|+||||||||+.+.|+.||...|.+|++|+|++|.+|++++||
T Consensus 544 fpeG~~~~~~~tkRP~Tagt~Fk~Sm~~Lv~nL~sKeP~YvRcikPNe~k~~~~fd~e~~~hqv~ylGLleNvrVrrAgf 623 (1001)
T KOG0164|consen 544 FPEGNPDIAEVTKRPPTAGTLFKNSMAALVKNLASKEPNYVRCIKPNEHKQPGQFDEERVRHQVRYLGLLENVRVRRAGF 623 (1001)
T ss_pred CCCCChhHHhhhcCCCcHHHHHHHHHHHHHHHHhhcCCCeEEeeccccccCccccchhhhHHHHHHHHHHhhhhhhhccc
Confidence 996432222 2237789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccChHHHHHHHhhhhcccCCC--CccHHHHHHHHHhhcCCC-Cceeccceeeecccc-cccccchhhhcchhhHHHHH
Q 001692 307 PTRKPFDEFVDRFGILASKVLDG--SSDEVTACKRLLEKVGLE-GYQIGKTKVFLRAGQ-MADLDARRTEVLGRSASIIQ 382 (1027)
Q Consensus 307 p~r~~~~~F~~ry~~l~~~~~~~--~~~~~~~~~~il~~~~~~-~~~iG~TkVFlr~~~-~~~Le~~r~~~l~~aa~~IQ 382 (1027)
.+|.+|+.|+.||+++++..|+. ..++++.|..|++..+.. ++.+|+||||+|+.. +..||..|.+++...++.||
T Consensus 624 ahRq~Y~~FL~RYKmi~~~TWPn~~~g~dkd~v~vL~e~~g~~~d~a~G~TKIFIRsPrTLF~lEe~r~~~l~~lvtllQ 703 (1001)
T KOG0164|consen 624 AHRQPYERFLLRYKMICESTWPNWRGGSDKDGVKVLLEHLGLAGDVAFGRTKIFIRSPRTLFALEEQRAERLPSLVTLLQ 703 (1001)
T ss_pred ccccchHHHHHHHHhhCcccCCCCCCCCchhHHHHHHHHhccchhhhcCceeEEEecchhHhhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998764 346799999999999885 899999999999865 58999999999999999999
Q ss_pred HHhhhcccchhhhhhchhhHHHHHHHHhhhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHH
Q 001692 383 RKVRSYLSRKNYIMLRRSAIHIQAACRGQLARTVYESMRREASCLRIQRDLRMYLAKKAYKD 444 (1027)
Q Consensus 383 ~~~R~~l~R~~y~~~r~a~i~iQ~~~Rg~laR~~~~~~r~~~Aai~IQ~~~R~~~~rk~y~~ 444 (1027)
+.||||++|.+|++|+++++.|+ |||.+..+ .++..||+.+|++..++.|.+
T Consensus 704 K~~RG~~~R~ry~rmka~~~ii~-wyR~~K~k---------s~v~el~~~~rg~k~~r~ygk 755 (1001)
T KOG0164|consen 704 KAWRGWLARQRYRRMKASATIIR-WYRRYKLK---------SYVQELQRRFRGAKQMRDYGK 755 (1001)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH---------HHHHHHHHHHHhhhhccccCC
Confidence 99999999999999999999999 88865432 356789999999999999864
No 7
>cd01380 MYSc_type_V Myosin motor domain, type V myosins. Myosins V transport a variety of intracellular cargo processively along actin filaments, such as membraneous organelles and mRNA. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an act
Probab=100.00 E-value=2.2e-95 Score=880.15 Aligned_cols=369 Identities=51% Similarity=0.830 Sum_probs=348.3
Q ss_pred CCCHHHHHHHHhhceEeecCceEEecCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcCCC---CCCCcccccccccCC
Q 001692 1 MCDAKALEDSLCKREIVTRDETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQD---PNSKSLIGVLDIYGF 77 (1027)
Q Consensus 1 ~~d~~~l~~~l~~r~~~~~~e~i~~~l~~~~a~~~rdalak~lY~~LF~wlV~~iN~~l~~~---~~~~~~IgiLDi~GF 77 (1027)
|||+++|.++||+|++.+++|.+++++++++|..+||+|||+||++||+|||.+||.+|+++ .....+|||||||||
T Consensus 299 gv~~~~L~~~l~~~~~~~~~e~i~~~~~~~qA~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~~~~IgiLDI~GF 378 (691)
T cd01380 299 GVDASDLRKWLVKRQIVTRSEKIVKPLTKEQAIVARDALAKHIYSKLFDWIVDVINKSLNTGEVKKKQTSFIGVLDIYGF 378 (691)
T ss_pred CCCHHHHHHHHHhCEEEECCeeEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCcccCCccceEEEEecCcc
Confidence 79999999999999999999999999999999999999999999999999999999999876 456789999999999
Q ss_pred ccccCCchhHhHhhhchHHHHhHHHHhhhhhhHhHhhhcCCccccccccCcHHHHHHhhcCCcchhhhhHhhhcCCCCCh
Q 001692 78 ESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEFVDNQDILDLIEKKPGGIIALLDEACMFPRSTH 157 (1027)
Q Consensus 78 E~f~~NsfeqlciNyanEkLq~~f~~~~f~~eq~ey~~E~i~~~~i~~~dn~~~ldli~~~~~Gil~lLdee~~~~~~td 157 (1027)
|+|+.||||||||||||||||++||+++|+.||++|.+|||+|++|+|.||++|||||+++ .|||++|||||++|++||
T Consensus 379 E~f~~NsfEQLcINyaNEkLQ~~f~~~iF~~eq~~Y~~EgI~~~~i~f~DN~~~ldLie~~-~Gil~lLdee~~~p~~td 457 (691)
T cd01380 379 ETFEKNSFEQFCINYANEKLQQQFNQHVFKLEQEEYLKEGIEWTFIDFYDNQPCIDLIESK-LGILSLLDEECRLPKGSD 457 (691)
T ss_pred cccCCCCHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCCCccccCCCCHHHHHHHhCC-CchHHHhHHhhcCCCCCh
Confidence 9999999999999999999999999999999999999999999999999999999999985 799999999999999999
Q ss_pred HHHHHHHHHHhc--CCCCCCCCCCCCCCeEEEeeccceeEeccchhhhhcchhhHHHHHHHhhcCCccccccccccchhc
Q 001692 158 ETFAQKLYQTFK--NHKRFSKPKLARSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCSFVSSLFLPLAEES 235 (1027)
Q Consensus 158 ~~~~~kl~~~~~--~~~~~~~~~~~~~~F~i~H~ag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~~~ 235 (1027)
++|++||++.++ +|+.|.+|+.+...|+|+||||+|+|+++||++||+|.++++++++|+.|+++||+.||+.....+
T Consensus 458 ~~f~~kl~~~~~~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~v~gfleKNrD~l~~~~~~ll~~S~~~~i~~lf~~~~~~~ 537 (691)
T cd01380 458 ESWAQKLYNKLPKKKNPHFEKPRFGQTSFTVKHFADDVEYDVDGFLEKNRDTVSDEHLDVLKASKNPFLKEVLDAAELAS 537 (691)
T ss_pred HHHHHHHHHHhcccCCCCccCCCCCCCeeEEEEccCCcccccccHHHhccccccHHHHHHHHhCccHHHHHHhhhhcccc
Confidence 999999999998 899999999888999999999999999999999999999999999999999999999997532111
Q ss_pred -----------------cCCCCCcchhHHHHHHHHHHHHHhccCCCeeeEecCCCCCCCCCcccccchhhhhhccchhhH
Q 001692 236 -----------------SKTSKFSSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVMEA 298 (1027)
Q Consensus 236 -----------------~~~~~~~tv~~~f~~~l~~L~~~l~~t~~hfIrCikpN~~~~~~~fd~~~V~~QLr~~gvle~ 298 (1027)
....+.+||+++|+.||+.||++|++|+||||||||||+.++|+.||..+|++||||+||+|+
T Consensus 538 ~~~~~~~~~~~~~~~~~~~~~~~~tv~~~fk~qL~~L~~~L~~t~phfIRCIKPN~~k~~~~fd~~~V~~QLr~~GvlE~ 617 (691)
T cd01380 538 SSSSSAKSKPAAKRPPKRAKQHKPTVGSQFKSSLIELMSTLNSTNPHYIRCIKPNDEKKPFKFEPKRVLQQLRACGVLET 617 (691)
T ss_pred cccccccccccccccccccccCCCcHHHHHHHHHHHHHHHHhccCCeEEEEeCCCcccCcCccCHHHHHHHHHHhchHHH
Confidence 012356899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCCCccChHHHHHHHhhhhcccCCCCccHHHHHHHHHhhcCC--CCceeccceeeecccccccccchh
Q 001692 299 IRISCAGYPTRKPFDEFVDRFGILASKVLDGSSDEVTACKRLLEKVGL--EGYQIGKTKVFLRAGQMADLDARR 370 (1027)
Q Consensus 299 iri~~~Gyp~r~~~~~F~~ry~~l~~~~~~~~~~~~~~~~~il~~~~~--~~~~iG~TkVFlr~~~~~~Le~~r 370 (1027)
|||+++|||+|++|.+|+.||++|+|.......|+++.|+.||..+.. ++|++|+||||||++++..||+.|
T Consensus 618 iri~r~Gyp~R~~~~~F~~ry~~L~~~~~~~~~~~k~~~~~iL~~~~~~~~~~~~G~tkVFlk~~~~~~LE~~R 691 (691)
T cd01380 618 IRISAAGFPSRWTYEEFAQRYRVLVPSKELWKSDPKQLCENILTKVIEDEDKYQFGKTKIFFRAGQVAFLEKLR 691 (691)
T ss_pred HHHHhccCCccccHHHHHHHHHHhCccccccCCCHHHHHHHHHHHhCCCcccEEecCceEEECcCHHHHHhhcC
Confidence 999999999999999999999999998764556899999999999875 589999999999999999999876
No 8
>cd01378 MYSc_type_I Myosin motor domain, type I myosins. Myosin I generates movement at the leading edge in cell motility, and class I myosins have been implicated in phagocytosis and vesicle transport. Myosin I, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 picon
Probab=100.00 E-value=2.6e-95 Score=877.32 Aligned_cols=369 Identities=42% Similarity=0.713 Sum_probs=348.7
Q ss_pred CCCHHHHHHHHhhceEeecC----ceEEecCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcCCC-CCCCccccccccc
Q 001692 1 MCDAKALEDSLCKREIVTRD----ETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQD-PNSKSLIGVLDIY 75 (1027)
Q Consensus 1 ~~d~~~l~~~l~~r~~~~~~----e~i~~~l~~~~a~~~rdalak~lY~~LF~wlV~~iN~~l~~~-~~~~~~IgiLDi~ 75 (1027)
|||+++|.++||+|++.+++ |.+++++++++|..+||+|||+||++||+|||.+||.+|.++ .....+|||||||
T Consensus 295 gv~~~~L~~~l~~~~~~~~~~~~~e~i~~~~~~~~a~~~rdalak~lY~~lF~wiV~~IN~~l~~~~~~~~~~IgILDIf 374 (674)
T cd01378 295 GVDPSELEKALTSRTIETGGGGRGEVYDVPLNVEQAAYTRDALAKAIYSRLFDWLVSRINKALQVKSPGKNKVIGVLDIY 374 (674)
T ss_pred CCCHHHHHHHhcccEEEeCCCCCceeEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCcceEEEEecc
Confidence 79999999999999999998 999999999999999999999999999999999999999875 5567899999999
Q ss_pred CCccccCCchhHhHhhhchHHHHhHHHHhhhhhhHhHhhhcCCccccccccCcHHHHHHhhc-CCcchhhhhHhhhcCC-
Q 001692 76 GFESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEFVDNQDILDLIEK-KPGGIIALLDEACMFP- 153 (1027)
Q Consensus 76 GFE~f~~NsfeqlciNyanEkLq~~f~~~~f~~eq~ey~~E~i~~~~i~~~dn~~~ldli~~-~~~Gil~lLdee~~~~- 153 (1027)
|||+|+.||||||||||||||||++||+++|+.||++|.+|||+|++|+|.||++|||||++ +|.|||++|||||++|
T Consensus 375 GFE~f~~NsfEQLcINyaNEkLQ~~f~~~~F~~eq~~Y~~EgI~~~~i~f~DN~~~ldLie~~~~~Gil~lLdee~~~p~ 454 (674)
T cd01378 375 GFEIFQKNSFEQFCINYVNEKLQQIFIELTLKAEQEEYVREGIKWTPIEYFNNKIVCDLIEGKRPPGIFSILDDVCATPH 454 (674)
T ss_pred cccccccccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcCcCChHHHHHHHhcCCCcchHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999 8999999999999999
Q ss_pred CCChHHHHHHHHHHhcCCCCCCCCCCCCCCeEEEeeccceeEeccchhhhhcchhhHHHHHHHhhcCCccccccccccch
Q 001692 154 RSTHETFAQKLYQTFKNHKRFSKPKLARSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCSFVSSLFLPLAE 233 (1027)
Q Consensus 154 ~~td~~~~~kl~~~~~~~~~~~~~~~~~~~F~i~H~ag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~ 233 (1027)
++||++|++||++.+++|+.+.+|+..+..|+|+||||+|+|+++||++||+|.++++++++|++|++++|+.||+....
T Consensus 455 ~~tD~~~~~kl~~~~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~~~gfleKNrD~l~~~~~~ll~~S~n~~i~~lf~~~~~ 534 (674)
T cd01378 455 EGTDQTFLEKLNKKFSSHPHSDHFSSGSDEFRIKHYAGDVTYSVEGFCDKNKDTLFKDLIELMQSSSNPFLRSLFPEKSD 534 (674)
T ss_pred CCChHHHHHHHHHHhccCCCCCCCCCCCCcEEEEEeceeeeecCcCHHHhhcchhhHHHHHHHHhCchHHHHHHhccccc
Confidence 99999999999999999999888888889999999999999999999999999999999999999999999999986433
Q ss_pred hccCCCCCcchhHHHHHHHHHHHHHhccCCCeeeEecCCCCCCCCCcccccchhhhhhccchhhHHHHHhhCCCCccChH
Q 001692 234 ESSKTSKFSSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVMEAIRISCAGYPTRKPFD 313 (1027)
Q Consensus 234 ~~~~~~~~~tv~~~f~~~l~~L~~~l~~t~~hfIrCikpN~~~~~~~fd~~~V~~QLr~~gvle~iri~~~Gyp~r~~~~ 313 (1027)
.. ...+.+||+++|+.||+.||++|++|+||||||||||+.++|+.||...|++||||+||+|+|||++.|||+|++|.
T Consensus 535 ~~-~~~~~~tv~~~fk~qL~~Lm~~L~~t~phfIRCIKPN~~k~p~~Fd~~~V~~QLr~~GvLE~iri~r~Gyp~R~~~~ 613 (674)
T cd01378 535 AD-SKKRPTTAGFKIKTSANALVETLMKCTPHYIRCIKPNETKSPNDFDESRVLHQVKYLGLLENVRVRRAGFAYRQTFD 613 (674)
T ss_pred cc-ccCCCCcHHHHHHHHHHHHHHHHHccCCeEEEEECCCccCCchhcCHHHHHHHHHhcChHHHHHHHhcCCCccccHH
Confidence 22 22366899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhcccCC-CCccHHHHHHHHHhhcCCC--Cceeccceeeeccc-ccccccchh
Q 001692 314 EFVDRFGILASKVLD-GSSDEVTACKRLLEKVGLE--GYQIGKTKVFLRAG-QMADLDARR 370 (1027)
Q Consensus 314 ~F~~ry~~l~~~~~~-~~~~~~~~~~~il~~~~~~--~~~iG~TkVFlr~~-~~~~Le~~r 370 (1027)
+|+.||++|++..+. ...|++++|+.||..++++ +|++|+||||||+| +++.||..|
T Consensus 614 ~F~~rY~~L~~~~~~~~~~~~k~~~~~iL~~~~~~~~~~~~GkTkVFlr~~~~l~~le~~R 674 (674)
T cd01378 614 KFLQRYKLLSPKTWPTWPGDAKSGVEVILKDLNIDPEEYQMGKTKIFIRNPETLFALEEMR 674 (674)
T ss_pred HHHHHHHHhCcccccccCCCHHHHHHHHHHHcCCCcccEEecCceEEEeCchhHHHHHhcC
Confidence 999999999987543 3468899999999998764 89999999999997 688898865
No 9
>cd01377 MYSc_type_II Myosin motor domain, type II myosins. Myosin II mediates cortical contraction in cell motility, and is the motor in smooth and skeletal muscle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydro
Probab=100.00 E-value=3.1e-95 Score=879.16 Aligned_cols=370 Identities=44% Similarity=0.753 Sum_probs=347.5
Q ss_pred CCCHHHHHHHHhhceEeecCceEEecCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcCCCCCCCcccccccccCCccc
Q 001692 1 MCDAKALEDSLCKREIVTRDETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQDPNSKSLIGVLDIYGFESF 80 (1027)
Q Consensus 1 ~~d~~~l~~~l~~r~~~~~~e~i~~~l~~~~a~~~rdalak~lY~~LF~wlV~~iN~~l~~~~~~~~~IgiLDi~GFE~f 80 (1027)
|||+++|.++||++++.++++.+++++++++|..+||+|||+||++||+|||.+||.+|+++.....+||||||||||+|
T Consensus 308 gv~~~~L~~~l~~~~~~~~~e~i~~~~~~~~A~~~rDalak~lY~~LF~wiV~~IN~~l~~~~~~~~~IgiLDIfGFE~f 387 (693)
T cd01377 308 GVNSADLLKALLHPRIKVGREWVTKGQNVEQVSFSVGALAKALYERLFLWLVKRINKTLDTKQQRAYFIGVLDIAGFEIF 387 (693)
T ss_pred CCCHHHHHHHhcceEEEECCeeEeeCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCceEEEEeccccccc
Confidence 79999999999999999999999999999999999999999999999999999999999987778899999999999999
Q ss_pred cCCchhHhHhhhchHHHHhHHHHhhhhhhHhHhhhcCCccccccc-cCcHHHHHHhhcCCcchhhhhHhhhcCCCCChHH
Q 001692 81 KTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEF-VDNQDILDLIEKKPGGIIALLDEACMFPRSTHET 159 (1027)
Q Consensus 81 ~~NsfeqlciNyanEkLq~~f~~~~f~~eq~ey~~E~i~~~~i~~-~dn~~~ldli~~~~~Gil~lLdee~~~~~~td~~ 159 (1027)
+.||||||||||||||||++|++++|+.||++|.+|||+|++|+| .||++|||||+++|.|||++|||||++|++||++
T Consensus 388 ~~NsfEQLcINyaNEkLQ~~f~~~vf~~eq~~Y~~EgI~~~~i~~~~dn~~~ldLie~~~~Gil~lLdee~~~~~~tD~~ 467 (693)
T cd01377 388 DFNSFEQLCINYTNEKLQQFFNHHMFVLEQEEYQREGIEWTFIDFGLDLQPTIDLIEKNPMGILSLLDEECVFPKATDKT 467 (693)
T ss_pred CCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccCCCcHHHHHHHhcCCCchHhhhhHHhcCCCCCHHH
Confidence 999999999999999999999999999999999999999999999 5999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCC--CCCCCCCCCeEEEeeccceeEeccchhhhhcchhhHHHHHHHhhcCCccccccccccchhc--
Q 001692 160 FAQKLYQTFKNHKRF--SKPKLARSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCSFVSSLFLPLAEES-- 235 (1027)
Q Consensus 160 ~~~kl~~~~~~~~~~--~~~~~~~~~F~i~H~ag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~~~-- 235 (1027)
|++||++.+++|+.| .+|+.....|+|+||||+|+|+++||++||+|.++++++++|++|+++||+.||+.....+
T Consensus 468 ~~~kl~~~~~~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~~~~i~~lf~~~~~~~~~ 547 (693)
T cd01377 468 FVEKLYDNHLGKSKFKKPKKGKAKAHFSLVHYAGTVDYNIDGWLEKNKDPLNDNVVGLLKKSSDKLVAELFKDYAEASGD 547 (693)
T ss_pred HHHHHHHHhcCCCcccccCCCCCCCcEEEEeeceeEeeccccHHHhccccccHHHHHHHHhCchHHHHHHhhhhcccccc
Confidence 999999999999887 4455567899999999999999999999999999999999999999999999997643211
Q ss_pred --------cCCCCCcchhHHHHHHHHHHHHHhccCCCeeeEecCCCCCCCCCcccccchhhhhhccchhhHHHHHhhCCC
Q 001692 236 --------SKTSKFSSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVMEAIRISCAGYP 307 (1027)
Q Consensus 236 --------~~~~~~~tv~~~f~~~l~~L~~~l~~t~~hfIrCikpN~~~~~~~fd~~~V~~QLr~~gvle~iri~~~Gyp 307 (1027)
.+.++++||+++|+.||+.||++|++|+||||||||||+.++|+.||...|++||||+||+|+|||+++|||
T Consensus 548 ~~~~~~~~~~~~~~~tv~~~F~~qL~~L~~~L~~t~~hfIRCIKPN~~k~p~~Fd~~~V~~QLr~~GvlEtvrirr~Gyp 627 (693)
T cd01377 548 GGGGGGKKKKGGSFRTVSQLYKEQLNKLMTTLRSTNPHFVRCIIPNEEKKPGKLDAHLVLDQLRCNGVLEGIRICRKGFP 627 (693)
T ss_pred cccccCCCCcCCccccHHHHHHHHHHHHHHHHhccCCeEEEEeCcCccCCCCccCHHHHHHHHHhcchHHHHHHHHcCCC
Confidence 112346899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccChHHHHHHHhhhhcccCC-CCccHHHHHHHHHhhcCCC--Cceeccceeeecccccccccchh
Q 001692 308 TRKPFDEFVDRFGILASKVLD-GSSDEVTACKRLLEKVGLE--GYQIGKTKVFLRAGQMADLDARR 370 (1027)
Q Consensus 308 ~r~~~~~F~~ry~~l~~~~~~-~~~~~~~~~~~il~~~~~~--~~~iG~TkVFlr~~~~~~Le~~r 370 (1027)
+|++|.+|+.||++|+|..+. ...|.++.|+.||+.++++ +|++|+||||||++++..||.+|
T Consensus 628 ~R~~f~~F~~rY~~L~~~~~~~~~~d~k~~~~~iL~~~~~~~~~~~~G~TKVFlk~~~~~~LE~~R 693 (693)
T cd01377 628 NRILYAEFRQRYEILAPNAIPKGFMDSKKASEKILKSLELDPEQYRFGHTKVFFRAGVLAHLEEMR 693 (693)
T ss_pred ccccHHHHHHHHHHhCcccccccCCCHHHHHHHHHHhcCCCcccEEecCCeEeECccHHHHHhhcC
Confidence 999999999999999998643 3468899999999998774 89999999999999999999876
No 10
>cd01381 MYSc_type_VII Myosin motor domain, type VII myosins. Myosins in this group have been associated with functions in sensory systems such as vision and hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydr
Probab=100.00 E-value=2.6e-95 Score=875.40 Aligned_cols=370 Identities=44% Similarity=0.712 Sum_probs=348.0
Q ss_pred CCCHHHHHHHHhhceEeecCceEEecCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcCCC-CCCCcccccccccCCcc
Q 001692 1 MCDAKALEDSLCKREIVTRDETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQD-PNSKSLIGVLDIYGFES 79 (1027)
Q Consensus 1 ~~d~~~l~~~l~~r~~~~~~e~i~~~l~~~~a~~~rdalak~lY~~LF~wlV~~iN~~l~~~-~~~~~~IgiLDi~GFE~ 79 (1027)
|||+++|.++||+|++.++||.|++++++++|..+||||||+||++||+|||.+||.+|+++ .....+||||||||||+
T Consensus 295 gv~~~~L~~~lt~~~~~~~~e~i~~~~~~~qA~~~rdalak~lY~~lF~wiV~~IN~~l~~~~~~~~~~IgiLDIfGFE~ 374 (671)
T cd01381 295 GVPIQDLMDALTSRTIFTRGETVVTPLSREQAVDVRDAFVKGIYGRLFVWIVRKINAAIYKPVQQSRNSIGVLDIFGFEN 374 (671)
T ss_pred CCCHHHHhhhhceEEEEeCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccceEEEEecCCccc
Confidence 79999999999999999999999999999999999999999999999999999999999754 45678999999999999
Q ss_pred ccCCchhHhHhhhchHHHHhHHHHhhhhhhHhHhhhcCCccccccccCcHHHHHHhhcCCcchhhhhHhhhcCCCCChHH
Q 001692 80 FKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEFVDNQDILDLIEKKPGGIIALLDEACMFPRSTHET 159 (1027)
Q Consensus 80 f~~NsfeqlciNyanEkLq~~f~~~~f~~eq~ey~~E~i~~~~i~~~dn~~~ldli~~~~~Gil~lLdee~~~~~~td~~ 159 (1027)
|+.||||||||||||||||++|++++|+.||++|.+|||+|++|+|.||++|||||+++|.|||++|||||++|+|||++
T Consensus 375 f~~NsfEQLcINy~NEkLQ~~f~~~vf~~eq~eY~~EgI~~~~i~f~dN~~~ldLie~kp~Gil~lLDee~~~p~~td~~ 454 (671)
T cd01381 375 FDVNSFEQLCINFANENLQQFFVQHIFKLEQEEYNLEHINWQHIEFVDNQDALDLIAIKPLNIMSLIDEESKFPKGTDQT 454 (671)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccCccCcHHHHHHHhcCCCCcceechHhhcCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCCCCC-CCCCeEEEeeccceeEeccchhhhhcchhhHHHHHHHhhcCCccccccccccchhc-cC
Q 001692 160 FAQKLYQTFKNHKRFSKPKL-ARSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCSFVSSLFLPLAEES-SK 237 (1027)
Q Consensus 160 ~~~kl~~~~~~~~~~~~~~~-~~~~F~i~H~ag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~~~-~~ 237 (1027)
|++||++.+++|+.|.+|+. ....|+|+||||+|+|+++||++||+|.++++++++|+.|+|++|+.+|+.....+ ..
T Consensus 455 f~~kl~~~~~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~n~~i~~lf~~~~~~~~~~ 534 (671)
T cd01381 455 MLEKLHSQHGLHSNYLKPKSTQETQFGINHFAGVVFYDTRGFLEKNRDTFSGDLSQLVQSSKNKFLKQIFQADVEMGAET 534 (671)
T ss_pred HHHHHHHHhcCCCCcccCCCCCCCceEEEEecceEeeccCCHHHhccchhhHHHHHHHHhChHHHHHHHhcccccccccc
Confidence 99999999999999998864 45799999999999999999999999999999999999999999999998653221 22
Q ss_pred CCCCcchhHHHHHHHHHHHHHhccCCCeeeEecCCCCCCCCCcccccchhhhhhccchhhHHHHHhhCCCCccChHHHHH
Q 001692 238 TSKFSSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVMEAIRISCAGYPTRKPFDEFVD 317 (1027)
Q Consensus 238 ~~~~~tv~~~f~~~l~~L~~~l~~t~~hfIrCikpN~~~~~~~fd~~~V~~QLr~~gvle~iri~~~Gyp~r~~~~~F~~ 317 (1027)
+.+.+||+++|+.||+.||++|++|+||||||||||+.++|+.||..+|++||||+||+|+|||++.|||+|++|.+|+.
T Consensus 535 ~~k~~tv~~~fk~qL~~L~~~L~~t~phfIRCIKPN~~k~~~~fd~~~V~~QLr~~Gvle~iri~r~Gyp~r~~~~~F~~ 614 (671)
T cd01381 535 RKKKPTLSSQFRRSLDLLMRTLSSCQPFFIRCIKPNEYKEPMVFDRELCVRQLRYSGMMETIRIRRAGYPIRHTFREFVE 614 (671)
T ss_pred cccCCcHHHHHHHHHHHHHHHHhcCCCeEEEEeCcchhhccCccChHHHHHHHHhcchHHHHHHHHcCcCceecHHHHHH
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhcccCCC--CccHHHHHHHHHhhcCC--CCceeccceeeecccccccccchh
Q 001692 318 RFGILASKVLDG--SSDEVTACKRLLEKVGL--EGYQIGKTKVFLRAGQMADLDARR 370 (1027)
Q Consensus 318 ry~~l~~~~~~~--~~~~~~~~~~il~~~~~--~~~~iG~TkVFlr~~~~~~Le~~r 370 (1027)
||++|++..... ..+.+..|+.|++.+.+ ++|++|+||||||++++..||+.|
T Consensus 615 rY~~L~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~G~TkVFlr~~~~~~LE~~r 671 (671)
T cd01381 615 RYRVLVPGVKPAYKQDCLAGLAQRICEAVLLADDDWQLGKTKVFLKDHHDLLLEQER 671 (671)
T ss_pred HHHHhCcccccccccccHHHHHHHHHHHcCCCcccEEeccceEEECcCHHHHHhhcC
Confidence 999999986532 34778999999998765 589999999999999999999865
No 11
>cd01387 MYSc_type_XV Myosin motor domain, type XV myosins. In vertebrates, myosin XV appears to be expressed in sensory tissue and play a role in hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis caus
Probab=100.00 E-value=8.4e-95 Score=871.79 Aligned_cols=369 Identities=38% Similarity=0.669 Sum_probs=343.5
Q ss_pred CCCHHHHHHHHhhceEeecCceEEecCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcCCCCCCCcccccccccCCccc
Q 001692 1 MCDAKALEDSLCKREIVTRDETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQDPNSKSLIGVLDIYGFESF 80 (1027)
Q Consensus 1 ~~d~~~l~~~l~~r~~~~~~e~i~~~l~~~~a~~~rdalak~lY~~LF~wlV~~iN~~l~~~~~~~~~IgiLDi~GFE~f 80 (1027)
|||+++|.++||++++.+++|.|.+++++++|..+||+|||+||++||+|||.+||.+|.+. ....+||||||||||+|
T Consensus 296 gv~~~~L~~~lt~~~~~~~~e~i~~~~~~~~a~~~rdalak~lY~~lF~wiV~~iN~~l~~~-~~~~~IgILDIfGFE~f 374 (677)
T cd01387 296 QISPEGLQKAITFKVTETRREKIFTPLTVESAVDARDAIAKVLYALLFNWLITRVNALVSPT-QDTLSIAILDIYGFEDL 374 (677)
T ss_pred CCCHHHHHHHhccCeEEeCCceEeccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCCceEEEEecCccccC
Confidence 79999999999999999999999999999999999999999999999999999999999864 45679999999999999
Q ss_pred cCCchhHhHhhhchHHHHhHHHHhhhhhhHhHhhhcCCccccccccCcHHHHHHhhcCCcchhhhhHhhhcCCCCChHHH
Q 001692 81 KTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEFVDNQDILDLIEKKPGGIIALLDEACMFPRSTHETF 160 (1027)
Q Consensus 81 ~~NsfeqlciNyanEkLq~~f~~~~f~~eq~ey~~E~i~~~~i~~~dn~~~ldli~~~~~Gil~lLdee~~~~~~td~~~ 160 (1027)
+.||||||||||||||||++||+++|+.||++|.+|||+|++|+|.||++|||||+++|.|||+||||||++|++||++|
T Consensus 375 ~~NsfEQLcINyaNEkLQ~~f~~~vF~~eq~eY~~EgI~~~~i~f~dN~~~ldLi~~kp~Gil~lLdee~~~p~~td~~~ 454 (677)
T cd01387 375 SFNSFEQLCINYANENLQYLFNKIVFQEEQEEYIREQLDWTEIAFADNQPVINLISLKPYGILRILDDQCCFPQATDHTF 454 (677)
T ss_pred CCCCHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccCcCChHHHHHHHhcCCCchHHHHHHHhcCCCCchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCCCCCCCCCeEEEeeccceeEeccchhhhhcchhhHHHHHHHhhcCCccccccccccchhc-----
Q 001692 161 AQKLYQTFKNHKRFSKPKLARSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCSFVSSLFLPLAEES----- 235 (1027)
Q Consensus 161 ~~kl~~~~~~~~~~~~~~~~~~~F~i~H~ag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~~~----- 235 (1027)
++|++..+++|+.|.+|+.+.+.|+|+||||+|+|+++||++||+|.++++++++|..|++++|+.+|+......
T Consensus 455 ~~kl~~~~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~~~~i~~lf~~~~~~~~~~~~ 534 (677)
T cd01387 455 LQKCHYHHGANPLYSKPKMPLPEFTIKHYAGKVTYQVHKFLDKNHDQVRQDVLDLFVSSRTRVVAHLFSSHAAQRAPKRL 534 (677)
T ss_pred HHHHHHhccCCccccCCCCCCCeeEEEEeCceeeecCCChHHhccchhhHHHHHHHHhCCcHHHHHHHhhhhcccccccc
Confidence 999999999999999998888899999999999999999999999999999999999999999999996532100
Q ss_pred ------cCCCCCcchhHHHHHHHHHHHHHhccCCCeeeEecCCCCCCCCCcccccchhhhhhccchhhHHHHHhhCCCCc
Q 001692 236 ------SKTSKFSSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVMEAIRISCAGYPTR 309 (1027)
Q Consensus 236 ------~~~~~~~tv~~~f~~~l~~L~~~l~~t~~hfIrCikpN~~~~~~~fd~~~V~~QLr~~gvle~iri~~~Gyp~r 309 (1027)
++..+.+||+++|+.||+.||++|++|+||||||||||+.++|+.||..+|++||||+||+|+|||+++|||+|
T Consensus 535 ~~~s~~~~~~~~~tv~~~f~~sL~~L~~~l~~t~phfIRCIKPN~~k~~~~Fd~~~V~~QLr~~GvlE~vri~r~Gyp~r 614 (677)
T cd01387 535 GKSSSGTRLYKAHTVAAKFQQSLLDLVEKMERCNPLFVRCLKPNHKKEPGLFEPDVVMAQLRYSGVLETVRIRKEGFPVR 614 (677)
T ss_pred cCCCccccccCCCcHHHHHHHHHHHHHHHHhcCCCeEEEEECCCCcCCccccChHHHHHHHHHhchHHHHHHHHccCCcc
Confidence 01124679999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cChHHHHHHHhhhhcccCCCCccHHHHHHHHHhhcCC--CCceeccceeeecccccccccchh
Q 001692 310 KPFDEFVDRFGILASKVLDGSSDEVTACKRLLEKVGL--EGYQIGKTKVFLRAGQMADLDARR 370 (1027)
Q Consensus 310 ~~~~~F~~ry~~l~~~~~~~~~~~~~~~~~il~~~~~--~~~~iG~TkVFlr~~~~~~Le~~r 370 (1027)
++|.+|+.||++|+|.......+.+..+..++..+++ ++|++|+||||||++++..||..|
T Consensus 615 ~~~~~F~~rY~~L~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~iG~TkVFlk~~~~~~LE~~r 677 (677)
T cd01387 615 LPFQHFIDRYRCLVALKLARPAPGDMCVSELSRLCGVEPPMYRVGASKLFLKEHLHQLLESMR 677 (677)
T ss_pred ccHHHHHHHHHHhCcccccCCCcHHHHHHHHHHHcCCCcccEEecceeEEEcCCHHHHHHhcC
Confidence 9999999999999997554333345556788887765 479999999999999999999876
No 12
>cd01383 MYSc_type_VIII Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates f
Probab=100.00 E-value=1.1e-94 Score=869.29 Aligned_cols=366 Identities=46% Similarity=0.794 Sum_probs=341.2
Q ss_pred CCCHHHHHHHHhhceEeecCceEEecCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcCCCC-CCCcccccccccCCcc
Q 001692 1 MCDAKALEDSLCKREIVTRDETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQDP-NSKSLIGVLDIYGFES 79 (1027)
Q Consensus 1 ~~d~~~l~~~l~~r~~~~~~e~i~~~l~~~~a~~~rdalak~lY~~LF~wlV~~iN~~l~~~~-~~~~~IgiLDi~GFE~ 79 (1027)
|||+++|.++||++++.++||.+++++++++|..+||+|||+||++||+|||.+||.+|++.. ....+||||||||||+
T Consensus 298 gv~~~~L~~~l~~~~~~~~~e~~~~~~~~~qa~~~rdalak~lY~~lF~wiV~~IN~~l~~~~~~~~~~IgiLDI~GFE~ 377 (677)
T cd01383 298 GCNIEDLMLALSTRKMHVNNDNIVQKLTLQQAIDARDALAKSIYASLFDWLVEQINKSLEVGKRRTGRSISILDIYGFES 377 (677)
T ss_pred CCCHHHHHHHhhhcEEEeCCceEeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccceEEEeecccccc
Confidence 799999999999999999999999999999999999999999999999999999999998653 3467999999999999
Q ss_pred ccCCchhHhHhhhchHHHHhHHHHhhhhhhHhHhhhcCCccccccccCcHHHHHHhhcCCcchhhhhHhhhcCCCCChHH
Q 001692 80 FKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEFVDNQDILDLIEKKPGGIIALLDEACMFPRSTHET 159 (1027)
Q Consensus 80 f~~NsfeqlciNyanEkLq~~f~~~~f~~eq~ey~~E~i~~~~i~~~dn~~~ldli~~~~~Gil~lLdee~~~~~~td~~ 159 (1027)
|+.||||||||||||||||++|++++|+.||++|.+|||+|++|+|.||++|||||+++|.|||++|||||++|++||++
T Consensus 378 f~~NsfEQLcINyaNEkLQ~~f~~~vF~~EqeeY~~EgI~~~~i~f~dN~~~ldLie~kp~Gil~lLdee~~~p~~tD~~ 457 (677)
T cd01383 378 FDKNSFEQFCINYANERLQQHFNRHLFKLEQEEYEEDGIDWTKVEFEDNQECLDLFEKKPLGLLSLLDEESTFPNATDLT 457 (677)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCcHHHHHHHhcCCccHHHHhHHHHcCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCCCCCCCCCeEEEeeccceeEeccchhhhhcchhhHHHHHHHhhcCCcccccccccc-----ch-
Q 001692 160 FAQKLYQTFKNHKRFSKPKLARSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCSFVSSLFLPL-----AE- 233 (1027)
Q Consensus 160 ~~~kl~~~~~~~~~~~~~~~~~~~F~i~H~ag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~v~~lf~~~-----~~- 233 (1027)
|++||++++++|+.|.+++ ...|+|+||||+|+|+++||++||+|.++++++++|++|+++++. +|... +.
T Consensus 458 f~~kl~~~~~~~~~~~~~~--~~~F~I~HyAG~V~Y~v~gfleKNrD~l~~~~~~ll~~S~~~~~~-~f~~~~~~~s~~~ 534 (677)
T cd01383 458 FANKLKQHLKTNSCFRGER--GGAFTVRHYAGEVTYDTTGFLEKNRDLLHSDSIQLLSSCKCQLPQ-LFASSMLIQSPVV 534 (677)
T ss_pred HHHHHHHHhCCCCCCCCCC--CCceEEEEeccceeecCCChHHhccccccHHHHHHHHhCchHHHH-HHHhhhhcccccc
Confidence 9999999999999998775 468999999999999999999999999999999999999999876 55432 00
Q ss_pred h-----ccCCCCCcchhHHHHHHHHHHHHHhccCCCeeeEecCCCCCCCCCcccccchhhhhhccchhhHHHHHhhCCCC
Q 001692 234 E-----SSKTSKFSSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVMEAIRISCAGYPT 308 (1027)
Q Consensus 234 ~-----~~~~~~~~tv~~~f~~~l~~L~~~l~~t~~hfIrCikpN~~~~~~~fd~~~V~~QLr~~gvle~iri~~~Gyp~ 308 (1027)
. ....++.+||+++|+.||+.||++|++|+||||||||||+.++|+.||...|++||||+||+|+|||+++|||+
T Consensus 535 ~~~~~~~~~~~~~~tv~~~fk~qL~~L~~~L~~t~phfIRCIKPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~ 614 (677)
T cd01383 535 GPLYVASAADSQKLSVGTKFKGQLFKLMQQLENTTPHFIRCIKPNNKQLPGIYEQGLVLQQLRCCGVLEVVRISRSGYPT 614 (677)
T ss_pred ccccccccccccCcchHHHHHHHHHHHHHHHhCCCCeEEEEECcccccCcCccchhhhHHHhhhccHHHHHHHHhcCCCc
Confidence 0 11123678999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccChHHHHHHHhhhhcccCCCCccHHHHHHHHHhhcCCC--Cceeccceeeecccccccccchh
Q 001692 309 RKPFDEFVDRFGILASKVLDGSSDEVTACKRLLEKVGLE--GYQIGKTKVFLRAGQMADLDARR 370 (1027)
Q Consensus 309 r~~~~~F~~ry~~l~~~~~~~~~~~~~~~~~il~~~~~~--~~~iG~TkVFlr~~~~~~Le~~r 370 (1027)
|++|.+|+.||++|++..+.. .|++..|+.||+.++++ +|++|+||||||+++++.||..|
T Consensus 615 R~~~~~F~~rY~~L~~~~~~~-~~~~~~~~~il~~~~~~~~~~~~GkTKVFlr~~~~~~LE~~r 677 (677)
T cd01383 615 RMTHQEFARRYGFLLLENIAS-QDPLSVSVAILQQFNILPEMYQVGYTKLFFRTGQIGALEDTR 677 (677)
T ss_pred cccHHHHHHHHHHhCccccCC-CCHHHHHHHHHHhcCCCcccEEeccceEEecCcHHHHHhhcC
Confidence 999999999999999986543 47889999999988764 89999999999999999999865
No 13
>cd01382 MYSc_type_VI Myosin motor domain, type VI myosins. Myosin VI is a monomeric myosin, which moves towards the minus-end of actin filaments, in contrast to most other myosins. It has been implicated in endocytosis, secretion, and cell migration. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the minus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of
Probab=100.00 E-value=5.5e-94 Score=869.65 Aligned_cols=367 Identities=40% Similarity=0.656 Sum_probs=342.9
Q ss_pred CCCHHHHHHHHhhceEe-----ecCceEEecCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcCCCCCCCccccccccc
Q 001692 1 MCDAKALEDSLCKREIV-----TRDETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQDPNSKSLIGVLDIY 75 (1027)
Q Consensus 1 ~~d~~~l~~~l~~r~~~-----~~~e~i~~~l~~~~a~~~rdalak~lY~~LF~wlV~~iN~~l~~~~~~~~~IgiLDi~ 75 (1027)
|||+++|.++||+|++. ++|+.|++++++++|..+||+|||+||++||+|||.+||.+|..+ .+..+|||||||
T Consensus 327 gv~~~~L~~~l~~r~~~~~~g~~~~~~i~~~l~~~qA~~~rdalak~lY~~LF~wiV~~IN~~l~~~-~~~~~IgiLDIf 405 (717)
T cd01382 327 GLDQDDLRVSLTTRVMLTTAGGAKGTVIKVPLKVEQANNARDALAKAVYSHLFDHVVSRVNQCFPFE-TSSNFIGVLDIA 405 (717)
T ss_pred CCCHHHHHHHHhheEEecccccCCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCCcEEEEEecc
Confidence 79999999999999998 789999999999999999999999999999999999999999765 356789999999
Q ss_pred CCccccCCchhHhHhhhchHHHHhHHHHhhhhhhHhHhhhcCCccccccccCcHHHHHHhhcCCcchhhhhHhhhcCCCC
Q 001692 76 GFESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEFVDNQDILDLIEKKPGGIIALLDEACMFPRS 155 (1027)
Q Consensus 76 GFE~f~~NsfeqlciNyanEkLq~~f~~~~f~~eq~ey~~E~i~~~~i~~~dn~~~ldli~~~~~Gil~lLdee~~~~~~ 155 (1027)
|||+|+.||||||||||||||||++|++++|+.||++|.+|||+|++|+|.||++|||||+++|.|||++|||||++|++
T Consensus 406 GFE~f~~NsfEQLcINyaNEkLQ~~f~~~if~~Eq~~Y~~EgI~~~~i~~~DN~~~ldLie~k~~Gil~lLDee~~~p~~ 485 (717)
T cd01382 406 GFEYFEHNSFEQFCINYCNEKLQQFFNERILKEEQELYQREGLGVNEVHYVDNQDCIDLIEAKLNGILDILDEENRLPQP 485 (717)
T ss_pred ccccCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccccHHHHHHHhcCCccHHHHhHHHhcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHhcCCCCCCCCCCC----------CCCeEEEeeccceeEeccchhhhhcchhhHHHHHHHhhcCCcccc
Q 001692 156 THETFAQKLYQTFKNHKRFSKPKLA----------RSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCSFVS 225 (1027)
Q Consensus 156 td~~~~~kl~~~~~~~~~~~~~~~~----------~~~F~i~H~ag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~v~ 225 (1027)
||++|++||++.+++|++|..|+.+ ...|+|+||||+|+|+++||++||+|.+++++.++|++|+++||+
T Consensus 486 tD~~f~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~v~gfleKNkD~l~~~~~~ll~~S~n~~i~ 565 (717)
T cd01382 486 SDQHFTSVVHQKHKDHFRLTIPRKSKLAVHRNLRDDEGFIIRHFAGAVCYETTQFVEKNNDALHMSLESLICESKDKFLR 565 (717)
T ss_pred CHHHHHHHHHHHhcCCcCccCCCccccccccccCCCCCEEEEecceeEeecCCChHHhcCccccHHHHHHHHhCchHHHH
Confidence 9999999999999999988776532 357999999999999999999999999999999999999999999
Q ss_pred ccccccchhc---c--CCCCCcchhHHHHHHHHHHHHHhccCCCeeeEecCCCCCCCCCcccccchhhhhhccchhhHHH
Q 001692 226 SLFLPLAEES---S--KTSKFSSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVMEAIR 300 (1027)
Q Consensus 226 ~lf~~~~~~~---~--~~~~~~tv~~~f~~~l~~L~~~l~~t~~hfIrCikpN~~~~~~~fd~~~V~~QLr~~gvle~ir 300 (1027)
.||+.....+ . +..++.||+++|+.||+.||++|++|+||||||||||+.++|+.||..+|++||||+||||+||
T Consensus 566 ~lf~~~~~~~~~~~~~~k~~~~tv~~~fk~qL~~Lm~~L~~t~~hfIRCIKPN~~k~p~~fd~~~V~~QLr~~GvLE~vr 645 (717)
T cd01382 566 SLFESSTNNNDTKQKAGKLSFISVGNKFKTQLNLLLEKLRSTGSSFIRCIKPNLKMVSHQFEGAQILSQLQCSGMVSVLD 645 (717)
T ss_pred HHhccccccccccccccCccCccHHHHHHHHHHHHHHHHhccCCeeeeeeCCCcccCCCCCChHHHHHHHHhcchHHHHH
Confidence 9997643211 1 1125679999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhCCCCccChHHHHHHHhhhhcccCCCCccHHHHHHHHHhhcCCC--Cceeccceeeecccccccccch
Q 001692 301 ISCAGYPTRKPFDEFVDRFGILASKVLDGSSDEVTACKRLLEKVGLE--GYQIGKTKVFLRAGQMADLDAR 369 (1027)
Q Consensus 301 i~~~Gyp~r~~~~~F~~ry~~l~~~~~~~~~~~~~~~~~il~~~~~~--~~~iG~TkVFlr~~~~~~Le~~ 369 (1027)
|++.|||+|++|.+|+.||+.|+|.... ..|+++.|+.||..++++ +|++|+||||||+|+++.||++
T Consensus 646 i~r~Gyp~R~~f~~F~~ry~~l~~~~~~-~~~~~~~~~~iL~~~~~~~~~~~~GkTKVFlr~g~~~~le~~ 715 (717)
T cd01382 646 LMQGGFPSRASFHELYNMYKKYMPPKLV-RLDPRLFCKALFKALGLNENDYKFGLTKVFFRPGKFAEFDQI 715 (717)
T ss_pred HHHccCchhhhHHHHHHHHHHhCCcccC-CCCHHHHHHHHHHHcCCCcccEEecceeEEecccHHHHHHHH
Confidence 9999999999999999999999987554 358899999999998774 8999999999999999999874
No 14
>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins. Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the hea
Probab=100.00 E-value=6.4e-94 Score=866.01 Aligned_cols=366 Identities=40% Similarity=0.654 Sum_probs=343.8
Q ss_pred CCCHHHHHHHHhhceEeecCceEEecCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcCCCC---CCCcccccccccCC
Q 001692 1 MCDAKALEDSLCKREIVTRDETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQDP---NSKSLIGVLDIYGF 77 (1027)
Q Consensus 1 ~~d~~~l~~~l~~r~~~~~~e~i~~~l~~~~a~~~rdalak~lY~~LF~wlV~~iN~~l~~~~---~~~~~IgiLDi~GF 77 (1027)
|||+++|.++||++++.++||.|++++++++|..+||+|||+||++||+|||++||.+|++.. ....+|||||||||
T Consensus 307 gv~~~~L~~~l~~~~~~~~~e~i~~~~~~~qa~~~rdalak~lY~~LF~wiV~~IN~~l~~~~~~~~~~~~IgiLDI~GF 386 (692)
T cd01385 307 KVKRETLMEALTKKRTVTVNETLILPYSLSEAITARDAMAKCLYSALFDWIVLRINHALLNKDDVAVSGLSIGVLDIFGF 386 (692)
T ss_pred CCCHHHHHHHhccCeEEeCCCeEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccceEEEEEecCcc
Confidence 799999999999999999999999999999999999999999999999999999999998643 34689999999999
Q ss_pred ccccC-CchhHhHhhhchHHHHhHHHHhhhhhhHhHhhhcCCccccccccCcHHHHHHhhcCCcchhhhhHhhhcCCCCC
Q 001692 78 ESFKT-NSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEFVDNQDILDLIEKKPGGIIALLDEACMFPRST 156 (1027)
Q Consensus 78 E~f~~-NsfeqlciNyanEkLq~~f~~~~f~~eq~ey~~E~i~~~~i~~~dn~~~ldli~~~~~Gil~lLdee~~~~~~t 156 (1027)
|+|+. ||||||||||||||||++|++++|+.||++|.+|||+|++|+|.||++|||||++||.|||++|||||++|++|
T Consensus 387 E~f~~~NsfEQLcINyaNEkLQ~~f~~~vf~~eq~~Y~~EgI~~~~i~f~dN~~~ldLie~k~~Gil~lLdee~~~p~~t 466 (692)
T cd01385 387 EDFGRCNSFEQLCINYANEQLQYYFNQHIFKLEQEEYQGEGITWTNIEYTDNVGCIQLFSKKPTGLLYLLDEESNFPHAT 466 (692)
T ss_pred ccCCCCCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCcHHHHHHHhcCCccHHHHhHHHhcCCCCC
Confidence 99999 99999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhcCCCCCCCCCCCCCCeEEEeeccceeEeccchhhhhcchhhHHHHHHHhhcCCccccccccccchhcc
Q 001692 157 HETFAQKLYQTFKNHKRFSKPKLARSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCSFVSSLFLPLAEESS 236 (1027)
Q Consensus 157 d~~~~~kl~~~~~~~~~~~~~~~~~~~F~i~H~ag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~~~~ 236 (1027)
|++|++|+++.+++|+.|.+|+.....|+|+||||+|+|+++||++||+|.++++++++|++|+|++|+.||+..+.+..
T Consensus 467 d~~~l~kl~~~~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~n~~i~~lf~~~~~~~~ 546 (692)
T cd01385 467 SQTLLAKFNQQHKDNKYYEGPQVKEPAFIIQHYAGKVKYQIKDFREKNMDLMRQDIVALLKGSDSSYVRELIGMDPVAVF 546 (692)
T ss_pred HHHHHHHHHHHhCCCCCccCCCCCCCeEEEEEecceeeecCCCHHHhccccccHHHHHHHHhCccHHHHHHhccCccccc
Confidence 99999999999999999999987788999999999999999999999999999999999999999999999976432211
Q ss_pred ---------CCCCCcchhHHHHHHHHHHHHHhccCCCeeeEecCCCCCCCCCcccccchhhhhhccchhhHHHHHhhCCC
Q 001692 237 ---------KTSKFSSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVMEAIRISCAGYP 307 (1027)
Q Consensus 237 ---------~~~~~~tv~~~f~~~l~~L~~~l~~t~~hfIrCikpN~~~~~~~fd~~~V~~QLr~~gvle~iri~~~Gyp 307 (1027)
++.+.+||+++|+.||+.||++|++|+||||||||||+.++|+.||...|++||||+||+|+|||++.|||
T Consensus 547 ~~~~~~~~~~~~~~~tV~~~f~~~L~~L~~~L~~t~~hfIRCIKPN~~k~p~~Fd~~~V~~QLr~~GvlE~irirr~Gyp 626 (692)
T cd01385 547 RWAVLRAAFRAMAAPSVSAQFQTSLNKLMETLGKAEPFFIRCIKSNAEKIENCFDDELVLRQLRYTGMLETVRIRRAGYS 626 (692)
T ss_pred ccccccccccCccCCcHHHHHHHHHHHHHHHHhccCCeEEEEeCCCCccCcCccCHHHHHHHHHhhchHHHHHHHhccCC
Confidence 12234799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccChHHHHHHHhhhhcccCCCCccHHHHHHHHHhhcCCC--Cceeccceeeecccccccccch
Q 001692 308 TRKPFDEFVDRFGILASKVLDGSSDEVTACKRLLEKVGLE--GYQIGKTKVFLRAGQMADLDAR 369 (1027)
Q Consensus 308 ~r~~~~~F~~ry~~l~~~~~~~~~~~~~~~~~il~~~~~~--~~~iG~TkVFlr~~~~~~Le~~ 369 (1027)
+|++|.+|+.||++|+|.... +.++.|+.||+.++++ +|++|+||||||++++..||..
T Consensus 627 ~R~~~~~F~~rY~~L~~~~~~---~~~~~~~~il~~~~~~~~~~~iGkTkVFlr~~~~~~Le~~ 687 (692)
T cd01385 627 VRYTYQDFTQQYRILLPKGAQ---SCREDISTLLSKMKIDKRNYQIGKTKIFMRETEKQALDET 687 (692)
T ss_pred ccccHHHHHHHHHHhCccccc---chHHHHHHHHHhcCCCcccEEeeCceEEEcccHHHHHHHH
Confidence 999999999999999987432 3467899999998875 8999999999999999999874
No 15
>cd01379 MYSc_type_III Myosin motor domain, type III myosins. Myosin III has been shown to play a role in the vision process in insects and in hearing in mammals. Myosin III, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the
Probab=100.00 E-value=3.7e-93 Score=852.87 Aligned_cols=347 Identities=40% Similarity=0.707 Sum_probs=331.5
Q ss_pred CCCHHHHHHHHhhceEeecCceEEecCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcCCCCC-----CCccccccccc
Q 001692 1 MCDAKALEDSLCKREIVTRDETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQDPN-----SKSLIGVLDIY 75 (1027)
Q Consensus 1 ~~d~~~l~~~l~~r~~~~~~e~i~~~l~~~~a~~~rdalak~lY~~LF~wlV~~iN~~l~~~~~-----~~~~IgiLDi~ 75 (1027)
|||+++|.++||++++.++|+.|++++++++|..+||||||+||++||+|||.+||.+|.++.. ...+|||||||
T Consensus 302 gv~~~~L~~~L~~~~~~~~ge~i~~~~~~~qA~~~rdalak~lY~~LF~wiV~~IN~~l~~~~~~~~~~~~~~IgiLDI~ 381 (653)
T cd01379 302 CIRSDELQEALTSHCVVTRGETIVRHNTVEKATDARDAMAKALYGRLFSWIVNRINSLLKHDRNASNSSDQLNVGILDIF 381 (653)
T ss_pred CCCHHHHHHHhcccEEEeCCceeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccceEEEEecc
Confidence 7999999999999999999999999999999999999999999999999999999999986532 35789999999
Q ss_pred CCccccCCchhHhHhhhchHHHHhHHHHhhhhhhHhHhhhcCCccccccccCcHHHHHHhhcCCcchhhhhHhhhcCCCC
Q 001692 76 GFESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEFVDNQDILDLIEKKPGGIIALLDEACMFPRS 155 (1027)
Q Consensus 76 GFE~f~~NsfeqlciNyanEkLq~~f~~~~f~~eq~ey~~E~i~~~~i~~~dn~~~ldli~~~~~Gil~lLdee~~~~~~ 155 (1027)
|||+|+.||||||||||||||||++|++++|+.||++|.+|||+|+.|+|.||++|||||++||.|||++|||||++|+|
T Consensus 382 GFE~f~~NsfEQLcINyaNEkLQ~~f~~~vf~~Eq~eY~~EgI~~~~i~~~dN~~~ldli~~kp~Gil~lLdee~~~~~~ 461 (653)
T cd01379 382 GFENFKKNSFEQLCINIANEQIQYYFNQHIFAWEQQEYLNEGVDARLVEYEDNRPLLDMFLQKPLGLLALLDEESRFPQA 461 (653)
T ss_pred ccccCCCCCHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcHHHHHhHccCCCcHHHHHHHHhcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHhcCCCCCCCCCCCCCCeEEEeeccceeEeccchhhhhcchhhHHHHHHHhhcCCccccccccccchhc
Q 001692 156 THETFAQKLYQTFKNHKRFSKPKLARSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCSFVSSLFLPLAEES 235 (1027)
Q Consensus 156 td~~~~~kl~~~~~~~~~~~~~~~~~~~F~i~H~ag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~~~ 235 (1027)
||++|++|++.+++ ++.|.+|+.....|+|+||||+|+|+++||++||+|.++++++++|++|
T Consensus 462 td~~~~~kl~~~~~-~~~~~~~~~~~~~F~I~HyAG~V~Y~~~gfleKNkD~l~~~~~~ll~~S---------------- 524 (653)
T cd01379 462 TDQTLVEKFEDNLK-SKFFWRPKRVELSFGIHHYAGKVLYNASGFLEKNRDFLPADIVLLLRSS---------------- 524 (653)
T ss_pred CHHHHHHHHHHhcC-CCCccCCCCCCCceEEEEeceeEeecCCCHHHhccccccHHHHHHHHhC----------------
Confidence 99999999999886 4678889888889999999999999999999999999999999999887
Q ss_pred cCCCCCcchhHHHHHHHHHHHHHhccCCCeeeEecCCCCCCCCCcccccchhhhhhccchhhHHHHHhhCCCCccChHHH
Q 001692 236 SKTSKFSSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVMEAIRISCAGYPTRKPFDEF 315 (1027)
Q Consensus 236 ~~~~~~~tv~~~f~~~l~~L~~~l~~t~~hfIrCikpN~~~~~~~fd~~~V~~QLr~~gvle~iri~~~Gyp~r~~~~~F 315 (1027)
+||+++|+.||++||++|++|+||||||||||+.+.|+.||+..|++||||+||+|+|||+++|||+|++|.+|
T Consensus 525 ------~tv~~~fr~~l~~L~~~l~~t~~hfIRCIKPN~~k~~~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~r~~~~~F 598 (653)
T cd01379 525 ------QTVASYFRYSLMDLLSKMVVGQPHFVRCIKPNEDRQAKKFDAEKVLKQLRYTGILETARIRRQGFSHRILFANF 598 (653)
T ss_pred ------cHHHHHHHHHHHHHHHHHhccCCceEEeeCCCcccCccccCHHHHHHHHHHcchHHHHHHHHcCCCccccHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhcccCCCCccHHHHHHHHHhhcCCCCceeccceeeecccccccccchh
Q 001692 316 VDRFGILASKVLDGSSDEVTACKRLLEKVGLEGYQIGKTKVFLRAGQMADLDARR 370 (1027)
Q Consensus 316 ~~ry~~l~~~~~~~~~~~~~~~~~il~~~~~~~~~iG~TkVFlr~~~~~~Le~~r 370 (1027)
+.||++|++.......+.++.|+.||..++.++|++|+||||||++++..||.+|
T Consensus 599 ~~rY~~l~~~~~~~~~~~~~~~~~il~~~~~~~~~~GktkvFlk~~~~~~le~~~ 653 (653)
T cd01379 599 IRRYCFLAYRFEEEPVSSPESCALILEKAKLDNWALGKTKVFLKYYHVEQLNLMR 653 (653)
T ss_pred HHHHHHhccccccccCChHHHHHHHHHhCCCCCEEecceEEEEecCHHHHHHhcC
Confidence 9999999987544455789999999999999999999999999999999999765
No 16
>smart00242 MYSc Myosin. Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin.
Probab=100.00 E-value=1e-92 Score=859.50 Aligned_cols=371 Identities=53% Similarity=0.889 Sum_probs=351.9
Q ss_pred CCCHHHHHHHHhhceEeecCceEEecCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcCCCCCCCcccccccccCCccc
Q 001692 1 MCDAKALEDSLCKREIVTRDETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQDPNSKSLIGVLDIYGFESF 80 (1027)
Q Consensus 1 ~~d~~~l~~~l~~r~~~~~~e~i~~~l~~~~a~~~rdalak~lY~~LF~wlV~~iN~~l~~~~~~~~~IgiLDi~GFE~f 80 (1027)
||++++|.++|+++++.+++|.+++++++++|..+||+|||+||++||+|||.+||.+|.++.....+||||||||||+|
T Consensus 303 gv~~~~L~~~l~~~~~~~~~e~~~~~~~~~~a~~~rd~lak~lY~~lF~wiV~~iN~~l~~~~~~~~~IgiLDifGFE~f 382 (677)
T smart00242 303 GVDPEELEKALTKRKIKTGGEVITKPLNVEQALDARDALAKALYSRLFDWLVKRINKSLSFKDGSTYFIGVLDIYGFEIF 382 (677)
T ss_pred CCCHHHHHHHhcccEEEeCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeccccccc
Confidence 79999999999999999999999999999999999999999999999999999999999887678899999999999999
Q ss_pred cCCchhHhHhhhchHHHHhHHHHhhhhhhHhHhhhcCCccccccccCcHHHHHHhhcCCcchhhhhHhhhcCCCCChHHH
Q 001692 81 KTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEFVDNQDILDLIEKKPGGIIALLDEACMFPRSTHETF 160 (1027)
Q Consensus 81 ~~NsfeqlciNyanEkLq~~f~~~~f~~eq~ey~~E~i~~~~i~~~dn~~~ldli~~~~~Gil~lLdee~~~~~~td~~~ 160 (1027)
+.||||||||||||||||++|++++|+.||++|.+|||+|++|+|.||++|||||+++|.|||++|||||++|++||++|
T Consensus 383 ~~NsfEQLcINyaNEkLq~~f~~~~f~~eq~~y~~EgI~~~~i~~~dN~~~l~li~~~~~Gil~lLdee~~~~~~td~~~ 462 (677)
T smart00242 383 EVNSFEQLCINYANEKLQQFFNQHVFKLEQEEYEREGIDWTFIDFFDNQDCIDLIEKKPPGILSLLDEECRFPKATDQTF 462 (677)
T ss_pred ccCCHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcHHHHHHHHcCCccHHHHHHHHhcCCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCCCC-CCCCCeEEEeeccceeEeccchhhhhcchhhHHHHHHHhhcCCccccccccccchhccCCC
Q 001692 161 AQKLYQTFKNHKRFSKPK-LARSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCSFVSSLFLPLAEESSKTS 239 (1027)
Q Consensus 161 ~~kl~~~~~~~~~~~~~~-~~~~~F~i~H~ag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~~~~~~~ 239 (1027)
++||++.+++|+.|.+|+ ..+..|+|+||||+|+|+++||++||+|.++++++++|+.|++++|+.||+.......+..
T Consensus 463 ~~kl~~~~~~~~~~~~~~~~~~~~F~I~H~AG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~n~~i~~lf~~~~~~~~~~~ 542 (677)
T smart00242 463 LEKLNQTHEKHPHFSKPRKKGRTEFIIKHYAGDVTYDVTGFLEKNKDTLFKDLIELLQSSKNPLIASLFPSGESNAGSKK 542 (677)
T ss_pred HHHHHHHhcCCCCccCCCCCCCCeEEEEecceeEeecCccHHHHccchhhHHHHHHHHhCCcHHHHHHhccccccccccC
Confidence 999999999999999984 4567999999999999999999999999999999999999999999999987544333344
Q ss_pred CCcchhHHHHHHHHHHHHHhccCCCeeeEecCCCCCCCCCcccccchhhhhhccchhhHHHHHhhCCCCccChHHHHHHH
Q 001692 240 KFSSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVMEAIRISCAGYPTRKPFDEFVDRF 319 (1027)
Q Consensus 240 ~~~tv~~~f~~~l~~L~~~l~~t~~hfIrCikpN~~~~~~~fd~~~V~~QLr~~gvle~iri~~~Gyp~r~~~~~F~~ry 319 (1027)
+.+||+++|+.||+.||++|++|+||||||||||+.++|+.||...|+.||||+||+|++||++.|||+|++|.+|+.||
T Consensus 543 ~~~tv~~~fk~~L~~L~~~l~~t~~hfIRCIKPN~~k~~~~Fd~~~V~~QLr~~Gvle~iri~r~Gyp~r~~~~~F~~ry 622 (677)
T smart00242 543 RFRTVGSQFKESLNKLMDTLNSTNPHFIRCIKPNEEKKPGDFDSSLVLHQLRYLGVLETIRIRRAGFPYRLPFDEFLQRY 622 (677)
T ss_pred CCCcHHHHHHHHHHHHHHHHhccCCeEEEEeCCCcccCcccccHHHHHHHHHhcccHHHHHHHHccccceecHHHHHHHH
Confidence 77899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcccCCC-CccHHHHHHHHHhhcCC--CCceeccceeeecccccccccchhh
Q 001692 320 GILASKVLDG-SSDEVTACKRLLEKVGL--EGYQIGKTKVFLRAGQMADLDARRT 371 (1027)
Q Consensus 320 ~~l~~~~~~~-~~~~~~~~~~il~~~~~--~~~~iG~TkVFlr~~~~~~Le~~r~ 371 (1027)
++|++..+.. ..|+++.|+.||..+++ ++|++|+||||||++++..||+.|+
T Consensus 623 ~~L~~~~~~~~~~~~k~~~~~iL~~~~~~~~~~~iGkTkVFlk~~~~~~Le~~R~ 677 (677)
T smart00242 623 RVLLPDTWPPWGGDAKEACEALLQSLGLDEDEYQLGKTKVFLRPGQLAELEELRE 677 (677)
T ss_pred HHhCcccccccCCCHHHHHHHHHHhcCCCcccEEecCceEeECccHHHHHHhhcC
Confidence 9999875533 34689999999999865 5899999999999999999998874
No 17
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=100.00 E-value=4.3e-92 Score=784.45 Aligned_cols=400 Identities=38% Similarity=0.663 Sum_probs=370.0
Q ss_pred CCCHHHHHHHHhhceEee----cCceEEecCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcCCC-CCCCccccccccc
Q 001692 1 MCDAKALEDSLCKREIVT----RDETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQD-PNSKSLIGVLDIY 75 (1027)
Q Consensus 1 ~~d~~~l~~~l~~r~~~~----~~e~i~~~l~~~~a~~~rdalak~lY~~LF~wlV~~iN~~l~~~-~~~~~~IgiLDi~ 75 (1027)
|||+..|++.||.|.+.+ +.+.+.++||++||.+.||||||+||.+||||||++||.+|... .....+|||||||
T Consensus 312 gi~s~~l~~~Lt~R~M~s~~G~kr~~~~v~LNv~QA~~~RDAlakaiy~~lFD~lV~rvNkam~~~~~~~~~sIGiLDIY 391 (1106)
T KOG0162|consen 312 GIDSARLEEKLTSRIMESKWGGKREVIHVPLNVEQASYTRDALAKAIYARLFDWLVERVNKAMQAFKGSEEYSIGILDIY 391 (1106)
T ss_pred cCCHHHHHHHHHHHHHhhcccccceeEEecccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccceeeEEee
Confidence 799999999999999986 35899999999999999999999999999999999999999743 3367899999999
Q ss_pred CCccccCCchhHhHhhhchHHHHhHHHHhhhhhhHhHhhhcCCccccccccCcHHHHHHhhc-CCcchhhhhHhhhcCC-
Q 001692 76 GFESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEFVDNQDILDLIEK-KPGGIIALLDEACMFP- 153 (1027)
Q Consensus 76 GFE~f~~NsfeqlciNyanEkLq~~f~~~~f~~eq~ey~~E~i~~~~i~~~dn~~~ldli~~-~~~Gil~lLdee~~~~- 153 (1027)
|||+|++||||||||||.||||||.|++-+++.|||||.+|||.|++|.|.||.-++||||. .|.||+++|||.|.-.
T Consensus 392 GFEIFe~N~FEQ~CINfVNEKLQQIFIeLTLKaEQEeYvrE~I~WTpIkYFnNKvVCDLIE~K~PPGims~ldD~~At~H 471 (1106)
T KOG0162|consen 392 GFEIFENNGFEQFCINFVNEKLQQIFIELTLKAEQEEYVREGIKWTPIKYFNNKVVCDLIENKRPPGIMSALDDVCATAH 471 (1106)
T ss_pred eeeecccCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcccccchhhcCCeeeeehhhccCCchHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999996 4779999999999743
Q ss_pred ---CCChHHHHHHHHHHhcCCCCCCCCCCCCCCeEEEeeccceeEeccchhhhhcchhhHHHHHHHhhcCCccccccccc
Q 001692 154 ---RSTHETFAQKLYQTFKNHKRFSKPKLARSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCSFVSSLFLP 230 (1027)
Q Consensus 154 ---~~td~~~~~kl~~~~~~~~~~~~~~~~~~~F~i~H~ag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~v~~lf~~ 230 (1027)
.+.|++|+++|...+++||+|..- ...|+|+||||+|+||++||.++|+|.+..|+++|++.|+++|++.||+.
T Consensus 472 a~~~~aDqa~~qrLn~~~~s~phF~~~---s~~FvIkHYAGdVtYdi~G~~drNrD~L~~DlieLm~ts~~~Fl~slFPe 548 (1106)
T KOG0162|consen 472 ADSEGADQALLQRLNKLFGSHPHFESR---SNGFVIKHYAGDVTYDIDGFCDRNRDVLFKDLIELMQTSENPFLKSLFPE 548 (1106)
T ss_pred cccchhHHHHHHHHHHHhcCCCccccc---cCceEEEEeccceeeecccccccchhHHHHHHHHHHhccchHHHHHhCch
Confidence 467999999999999999999843 47899999999999999999999999999999999999999999999997
Q ss_pred cchhccCCCCCcchhHHHHHHHHHHHHHhccCCCeeeEecCCCCCCCCCcccccchhhhhhccchhhHHHHHhhCCCCcc
Q 001692 231 LAEESSKTSKFSSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVMEAIRISCAGYPTRK 310 (1027)
Q Consensus 231 ~~~~~~~~~~~~tv~~~f~~~l~~L~~~l~~t~~hfIrCikpN~~~~~~~fd~~~V~~QLr~~gvle~iri~~~Gyp~r~ 310 (1027)
..+. .+..+++|.|++.+.|.++|++||..|.||||||||||+.|.|+.||...|++|+.|+|+-|.|||+++||.+|.
T Consensus 549 ~v~~-dskrRP~Tag~kIkkqANdLVeTLmKc~P~YIR~IKPNeTK~pnD~ee~~V~HQveYLGLqENiRvRRAGfAYRr 627 (1106)
T KOG0162|consen 549 NVDA-DSKRRPPTAGDKIKKQANDLVETLMKCQPHYIRCIKPNETKSPNDWEESRVKHQVEYLGLQENIRVRRAGFAYRR 627 (1106)
T ss_pred hhcc-cccCCCCCchhhHHhhHHHHHHHHHhcCcceeEeeCCCCCCCCccHHHHHHHHHHHhcchhhheeehhhhhHHHH
Confidence 6433 334578999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHhhhhcccCC-CCccHHHHHHHHHhhcCC--CCceeccceeeecc-cccccccchhhhcchhhHHHHHHHhh
Q 001692 311 PFDEFVDRFGILASKVLD-GSSDEVTACKRLLEKVGL--EGYQIGKTKVFLRA-GQMADLDARRTEVLGRSASIIQRKVR 386 (1027)
Q Consensus 311 ~~~~F~~ry~~l~~~~~~-~~~~~~~~~~~il~~~~~--~~~~iG~TkVFlr~-~~~~~Le~~r~~~l~~aa~~IQ~~~R 386 (1027)
.|+.|++||.+|.|..++ +..|++++|+.||....+ ++||+|.||||++. ..+..||.+|+......|.+||+.||
T Consensus 628 ~F~kF~qRyailsp~t~~twqGD~~~av~~il~~~~m~~~qyQmG~tkVFiKnPEsLF~LEemRer~~d~~A~~IQkAWR 707 (1106)
T KOG0162|consen 628 AFDKFAQRYAILSPQTWPTWQGDEKQAVEHILRDVNMPSDQYQMGVTKVFIKNPESLFLLEEMRERKWDGMARRIQKAWR 707 (1106)
T ss_pred HHHHHHHHheecCcccccccccchHHHHHHHHHhcCCChhHhhccceeEEecChHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 999999999999998764 356899999999998765 58999999999997 55789999999999999999999999
Q ss_pred hcccchhhhhhchhhHHH
Q 001692 387 SYLSRKNYIMLRRSAIHI 404 (1027)
Q Consensus 387 ~~l~R~~y~~~r~a~i~i 404 (1027)
.|++|++|.+||.-+..+
T Consensus 708 rfv~rrky~k~ree~t~l 725 (1106)
T KOG0162|consen 708 RFVARRKYEKMREEATKL 725 (1106)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999988765543
No 18
>cd00124 MYSc Myosin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the fila
Probab=100.00 E-value=7.7e-91 Score=846.04 Aligned_cols=370 Identities=49% Similarity=0.819 Sum_probs=344.6
Q ss_pred CCCHHHHHHHHhhceEeecCceEEecCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcCCCCCCCcccccccccCCccc
Q 001692 1 MCDAKALEDSLCKREIVTRDETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQDPNSKSLIGVLDIYGFESF 80 (1027)
Q Consensus 1 ~~d~~~l~~~l~~r~~~~~~e~i~~~l~~~~a~~~rdalak~lY~~LF~wlV~~iN~~l~~~~~~~~~IgiLDi~GFE~f 80 (1027)
|||+++|.++||++++.++|+.+++++++++|..+||+|||+||++||+|||.+||.+|+++.....+||||||||||+|
T Consensus 296 gv~~~~L~~~l~~~~~~~~~~~~~~~~~~~~a~~~rdalak~lY~~lF~wiV~~iN~~l~~~~~~~~~IgiLDi~GFE~f 375 (679)
T cd00124 296 GLDPEELEEALTYKVTKVGGEVITIPLTKEEAVDSRDSLAKALYSRLFDWIVSRINSSLKPKDGRSLFIGILDIFGFEIF 375 (679)
T ss_pred CCCHHHHHHHhhccEEEeCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCceeeEEeccccccC
Confidence 79999999999999999999999999999999999999999999999999999999999886677899999999999999
Q ss_pred cCCchhHhHhhhchHHHHhHHHHhhhhhhHhHhhhcCCccccccccCcHHHHHHhhcCCcchhhhhHhhhcCCCCChHHH
Q 001692 81 KTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEFVDNQDILDLIEKKPGGIIALLDEACMFPRSTHETF 160 (1027)
Q Consensus 81 ~~NsfeqlciNyanEkLq~~f~~~~f~~eq~ey~~E~i~~~~i~~~dn~~~ldli~~~~~Gil~lLdee~~~~~~td~~~ 160 (1027)
+.||||||||||||||||++|++++|+.||++|.+|||+|++|+|.||++|||||+++|.|||++|||||++|++||++|
T Consensus 376 ~~NsfEQLcINy~NEkLq~~f~~~~f~~eq~~y~~EgI~~~~i~~~dn~~~ldli~~~~~Gi~~lLdee~~~~~~~d~~~ 455 (679)
T cd00124 376 EKNSFEQLCINYANEKLQQFFNQHVFKLEQEEYQEEGIDWESIDFTDNQEVIDLIEKKPGGLLSLLDEECLFPKGTDETF 455 (679)
T ss_pred CCCCHHHHhcccchHHHHHHHHHHHHHHHHHHHHhcCCCccCCcCCCCHHHHHHHhcCCCcHHHHHHHHhCCCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCC-CCCCCCCeEEEeeccceeEeccchhhhhcchhhHHHHHHHhhcCCccccccccccchhc----
Q 001692 161 AQKLYQTFKNHKRFSK-PKLARSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCSFVSSLFLPLAEES---- 235 (1027)
Q Consensus 161 ~~kl~~~~~~~~~~~~-~~~~~~~F~i~H~ag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~~~---- 235 (1027)
++||++.+++|+.|.. ++..+..|+|+||||+|+|+++||++||+|.++++++++|+.|++++|+.||+.....+
T Consensus 456 ~~kl~~~~~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~v~gfleKN~D~l~~~~~~ll~~S~~~~i~~lf~~~~~~~~~~~ 535 (679)
T cd00124 456 LEKLNNKLKSNNAFYPAKKNAPTEFTIKHYAGDVTYDARGFLEKNKDVLSPELVSLLKSSSNPFIRELFESELSKTGNSS 535 (679)
T ss_pred HHHHHHHhcCCcccccCCCCCCCceEEEeeceeEEecCCCHHHhcCCcccHHHHHHHHhCCcHHHHHHhccccccccccc
Confidence 9999999999988643 44556899999999999999999999999999999999999999999999997642111
Q ss_pred -------cCCCCCcchhHHHHHHHHHHHHHhccCCCeeeEecCCCCCCCCCcccccchhhhhhccchhhHHHHHhhCCCC
Q 001692 236 -------SKTSKFSSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVMEAIRISCAGYPT 308 (1027)
Q Consensus 236 -------~~~~~~~tv~~~f~~~l~~L~~~l~~t~~hfIrCikpN~~~~~~~fd~~~V~~QLr~~gvle~iri~~~Gyp~ 308 (1027)
.+..+.+||+++|+.||+.||++|++|+||||||||||+.++|+.||...|++||||+||+|+|||++.|||+
T Consensus 536 ~~~~~~~~~~~~~~tv~~~f~~qL~~L~~~L~~t~~hfIRCIKPN~~k~p~~fd~~~V~~QLr~~GvlE~irirr~Gyp~ 615 (679)
T cd00124 536 TGSTSSKGKKKKGQTVGSQFRTSLDALMATLNSTEPHFIRCIKPNEEKKPNAFDSGKVLQQLRYLGILETIRIRRLGFSV 615 (679)
T ss_pred cccccccccccCCCcHHHHHHHHHHHHHHHHhcCCCeEEEEECCCcccCCCccChHHHHHHHHHhchHHHHHHHHccCCc
Confidence 1223678999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccChHHHHHHHhhhhcccCCCCccHHHHHHHHHhhcCCC--Cceeccceeeecccccccccchh
Q 001692 309 RKPFDEFVDRFGILASKVLDGSSDEVTACKRLLEKVGLE--GYQIGKTKVFLRAGQMADLDARR 370 (1027)
Q Consensus 309 r~~~~~F~~ry~~l~~~~~~~~~~~~~~~~~il~~~~~~--~~~iG~TkVFlr~~~~~~Le~~r 370 (1027)
|++|.+|+.||++|++.........+..|+.++..++++ +|++|+||||||++++..||..|
T Consensus 616 R~~~~eF~~rY~~L~~~~~~~~~~~~~~~~~il~~~~~~~~~~~vGkTkVFlr~~~~~~LE~~r 679 (679)
T cd00124 616 RIPFDEFLSRYRFLAPDLLEKVSLTKKQVECLLELLGLPKDEWQVGKTKVFLKEGQLSELEKMR 679 (679)
T ss_pred eeeHHHHHHHHHHhCcccccccCCcHHHHHHHHHhcCCCccCEEecCCeEEECcCHHHHHhccC
Confidence 999999999999999886554333444499999988764 89999999999999999998765
No 19
>cd01386 MYSc_type_XVIII Myosin motor domain, type XVIII myosins. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the
Probab=100.00 E-value=2.9e-89 Score=829.20 Aligned_cols=370 Identities=29% Similarity=0.455 Sum_probs=329.4
Q ss_pred CCCHHHHHHHHhhceEeecCc-------------eEEecCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcCCCCCCCc
Q 001692 1 MCDAKALEDSLCKREIVTRDE-------------TITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQDPNSKS 67 (1027)
Q Consensus 1 ~~d~~~l~~~l~~r~~~~~~e-------------~i~~~l~~~~a~~~rdalak~lY~~LF~wlV~~iN~~l~~~~~~~~ 67 (1027)
|||+++|.++|+++++.++++ .++.++++.+|..+||||||+||++||+|||.+||.+|.++.....
T Consensus 294 gv~~~~L~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~rdalaK~lY~rLF~wiV~~IN~~l~~~~~~~~ 373 (767)
T cd01386 294 GCPLEELSSATFKHTLRGGINQMTTGPQRPGLSDTETSSGLKMTAVECLEGMASGLYSELFAAVVSLINRSISSSHHSIA 373 (767)
T ss_pred CCCHHHHHHHhcccEEeecceeeeccccccccccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCc
Confidence 799999999999988766543 3445788999999999999999999999999999999987766678
Q ss_pred ccccccccCCccccC------CchhHhHhhhchHHHHhHHHHhhhhhhHhHhhhcCCccccccc-cCcHHHHHHhhcCC-
Q 001692 68 LIGVLDIYGFESFKT------NSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEF-VDNQDILDLIEKKP- 139 (1027)
Q Consensus 68 ~IgiLDi~GFE~f~~------NsfeqlciNyanEkLq~~f~~~~f~~eq~ey~~E~i~~~~i~~-~dn~~~ldli~~~~- 139 (1027)
+||||||||||+|+. |||||||||||||||||+||++||+.||++|.+|||+|+++.+ .||++|||||+++|
T Consensus 374 ~IgiLDIfGFE~f~~n~~~~~NsfEQLcINyaNEkLQq~f~~~vF~~Eq~eY~~EGI~~~~~~~~~dn~~~i~lid~~p~ 453 (767)
T cd01386 374 SIMLVDTPGFQNPASQGKDRAATFEELCHNYLQERLQLLFHHRTFVQPLERYAEEGVEVEFDLAEPSPGTTVALVDQAPQ 453 (767)
T ss_pred EEEEEecccccccccccccCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcCCccccccCCCchhhHHHhhcccc
Confidence 999999999999984 8999999999999999999999999999999999999987655 79999999999865
Q ss_pred -------------cchhhhhHhhhcCCCCChHHHHHHHHHHhcCCCCCCCCC------CCCCCeEEEeeccc--eeEecc
Q 001692 140 -------------GGIIALLDEACMFPRSTHETFAQKLYQTFKNHKRFSKPK------LARSDFTICHYAGD--VTYQTE 198 (1027)
Q Consensus 140 -------------~Gil~lLdee~~~~~~td~~~~~kl~~~~~~~~~~~~~~------~~~~~F~i~H~ag~--V~Y~~~ 198 (1027)
.|||++|||||++|++||++|++||++.+++|+.|.++. ..+..|+|+||||+ |+|++.
T Consensus 454 ~~~~~~~~~~~~~~GIl~lLDEec~~p~~tD~~f~~kl~~~~~~~~~~~~~~~~~~~~~~~~~F~I~HyAG~~~V~Y~~~ 533 (767)
T cd01386 454 QVVVPAGLRAEDARGLLWLLDEEALVPGSSDDTFLERLFAAYGDRETRETGLSRLRTCEGPLQFVLFHLLGTNPVLYDVT 533 (767)
T ss_pred cccccchhhccCCCchhhhhhHhhcCCCCcHHHHHHHHHHHhccCCCcccCccccccCCCCCcEEEEEcCCCCceEecCC
Confidence 599999999999999999999999999999988887622 12468999999995 999999
Q ss_pred chhhhhcchh-hHHHHHHHhhcCCccccccccccch-------------hcc----------C--------CCCCcchhH
Q 001692 199 LFLDKNKDYV-VAEHQALLSASKCSFVSSLFLPLAE-------------ESS----------K--------TSKFSSIGS 246 (1027)
Q Consensus 199 ~fl~kN~d~~-~~~~~~ll~~S~~~~v~~lf~~~~~-------------~~~----------~--------~~~~~tv~~ 246 (1027)
||++||+|.+ +.+++++|++|++++|+.||+.... ..+ + ..+..||++
T Consensus 534 gfleKNkD~~~~~~~~~ll~~S~~~~i~~lF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~tv~~ 613 (767)
T cd01386 534 GWLRRAKPNPAALNAPQLLQDSKREEINSLFQGRAGLAPVCLGAGAGLEGTSQQALRRSSSIRRTFTSSTAAVKRKSPCV 613 (767)
T ss_pred CHHHhcCCCCChHHHHHHHHhCCcHHHHHHHhcccccccccccccccccccccccccccccccccccccccccccccHHH
Confidence 9999999965 6899999999999999999954210 000 0 013458999
Q ss_pred HHHHHHHHHHHHhccCCCeeeEecCCCCCCC----------------------CCcccccchhhhhhccchhhHHHHHhh
Q 001692 247 RFKQQLQQLLETLSSSEPHYIRCVKPNNLLK----------------------PAIFENKNVLQQLRCGGVMEAIRISCA 304 (1027)
Q Consensus 247 ~f~~~l~~L~~~l~~t~~hfIrCikpN~~~~----------------------~~~fd~~~V~~QLr~~gvle~iri~~~ 304 (1027)
+|+.||+.||++|++|+||||||||||+.+. |+.||.++|++||||+||+|+|||+++
T Consensus 614 qFk~qL~~Lm~~L~~t~phfIRCIKPN~~k~~~~~~~~~~~~~~~~~~~~~~~p~~fd~~~V~~QLr~~GvlE~iri~r~ 693 (767)
T cd01386 614 QVKLQVDALIDTLRRSGLHFVHCYLPQHNGGKAMARTASPSPQQSEDNGVAAEPLALDIPLLRSQLRGSQILEAARLHRL 693 (767)
T ss_pred HHHHHHHHHHHHHhccCCeeEEEeCccccccccccccccccccccccccccccccccCHHHHHHHHHhcccHHHHHHHhc
Confidence 9999999999999999999999999999874 789999999999999999999999999
Q ss_pred CCCCccChHHHHHHHhhhhcccCC------CCccHHHHHHHHHhhcCCC--Cceeccceeeecccccccccchh
Q 001692 305 GYPTRKPFDEFVDRFGILASKVLD------GSSDEVTACKRLLEKVGLE--GYQIGKTKVFLRAGQMADLDARR 370 (1027)
Q Consensus 305 Gyp~r~~~~~F~~ry~~l~~~~~~------~~~~~~~~~~~il~~~~~~--~~~iG~TkVFlr~~~~~~Le~~r 370 (1027)
|||+|++|.+|+.||++|++..++ ...|++++|+.||..++++ +|++|+||||||+++++.||+.|
T Consensus 694 Gfp~R~~~~~F~~RY~~L~~~~~~~~~~~~~~~d~r~~~~~il~~~~~~~~~~~iGkTKVFlr~~~~~~LE~~R 767 (767)
T cd01386 694 GFPISVPLGEFVRRFGLLAEGLTKKVGGAGGGADERAAVEEILENLELDKSSYRIGHSQVFFRAGVLSRLEAQR 767 (767)
T ss_pred CCcccccHHHHHHHHHhhChhhcccccccccCCCHHHHHHHHHHHcCCCcceEEeecceEEecccHHHHHhccC
Confidence 999999999999999999886432 2358899999999998764 89999999999999999999876
No 20
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=100.00 E-value=5.4e-86 Score=735.87 Aligned_cols=438 Identities=38% Similarity=0.620 Sum_probs=384.3
Q ss_pred CCCHHHHHHHHhhceEee-----cCceEEecCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcCCCCCCCccccccccc
Q 001692 1 MCDAKALEDSLCKREIVT-----RDETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQDPNSKSLIGVLDIY 75 (1027)
Q Consensus 1 ~~d~~~l~~~l~~r~~~~-----~~e~i~~~l~~~~a~~~rdalak~lY~~LF~wlV~~iN~~l~~~~~~~~~IgiLDi~ 75 (1027)
|+|+++|.-.||.|++.+ +|-.|.+||.+.+|..+||||||++|++||||||.+||+++-.. .+..|||||||.
T Consensus 381 Gld~~elr~~L~aRvMqtt~GG~kGTvIrVPLK~~eA~n~RDALaKaiYSkLFD~lV~~iNqsiPFe-~St~fiGVLDiA 459 (1259)
T KOG0163|consen 381 GLDQTELRTGLCARVMQTTKGGFKGTVIRVPLKIHEASNARDALAKAIYSKLFDWLVGRINQSIPFE-KSTFFIGVLDIA 459 (1259)
T ss_pred CCCHHHHHHHHHHHHHHhccCCccceEEEeeccHHhhcchHHHHHHHHHHHHHHHHHHHhhcccccc-cccceeEEEeec
Confidence 799999999999999875 34588999999999999999999999999999999999999543 578999999999
Q ss_pred CCccccCCchhHhHhhhchHHHHhHHHHhhhhhhHhHhhhcCCccccccccCcHHHHHHhhcCCcchhhhhHhhhcCCCC
Q 001692 76 GFESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEFVDNQDILDLIEKKPGGIIALLDEACMFPRS 155 (1027)
Q Consensus 76 GFE~f~~NsfeqlciNyanEkLq~~f~~~~f~~eq~ey~~E~i~~~~i~~~dn~~~ldli~~~~~Gil~lLdee~~~~~~ 155 (1027)
|||-|..||||||||||+|||||++||+.+++.|||.|.+||++...|+|.||++||+|||.|..|||.|||||..+|+.
T Consensus 460 GFEyf~~NSFEQFCINyCNEKLQ~FFNerILkeEQElYekEGLnv~ei~f~DNqDcIeL~E~K~~GifdlLDEEaklP~~ 539 (1259)
T KOG0163|consen 460 GFEYFAVNSFEQFCINYCNEKLQKFFNERILKEEQELYEKEGLNVPEIEFTDNQDCIELIEAKSNGIFDLLDEEAKLPKP 539 (1259)
T ss_pred cceeeecccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEeccchhHHHHHHHhccchhhhhhhhccCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHhcCCCCCCCCCCC----------CCCeEEEeeccceeEeccchhhhhcchhhHHHHHHHhhcCCcccc
Q 001692 156 THETFAQKLYQTFKNHKRFSKPKLA----------RSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCSFVS 225 (1027)
Q Consensus 156 td~~~~~kl~~~~~~~~~~~~~~~~----------~~~F~i~H~ag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~v~ 225 (1027)
+++.|....++.+++|=+...|+.+ ...|.|+||||.|.|++..|++||.|.+...+..|+..|+++++.
T Consensus 540 s~qhFT~~vHe~~k~HfRL~~PRkSklksHR~lRDdEG~liRHfAGaVCYeT~~FvEKNnD~LH~SLe~Li~es~~~ll~ 619 (1259)
T KOG0163|consen 540 SYQHFTARVHESNKNHFRLDLPRKSKLKSHRELRDDEGFLIRHFAGAVCYETEQFVEKNNDALHNSLEGLIEESDNPLLV 619 (1259)
T ss_pred chHHHHHHHHHhhhcceeecCCchhhhhhhhhhccccceeeeecccceeechHHHHHhccHHHHHHHHHHHHhccchHHH
Confidence 9999999999999988777777643 358999999999999999999999999999999999999999999
Q ss_pred ccccccchhccCC----CCCcchhHHHHHHHHHHHHHhccCCCeeeEecCCCCCCCCCcccccchhhhhhccchhhHHHH
Q 001692 226 SLFLPLAEESSKT----SKFSSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVMEAIRI 301 (1027)
Q Consensus 226 ~lf~~~~~~~~~~----~~~~tv~~~f~~~l~~L~~~l~~t~~hfIrCikpN~~~~~~~fd~~~V~~QLr~~gvle~iri 301 (1027)
.||++....+++. -++-|||++|+.+|..||+.|.+|..|||||||||..+.|+.||...++.||+|+|+...+++
T Consensus 620 sLF~S~s~t~a~~~~gkL~~iSVGaKFKtQL~~LldKL~stGt~FiRCiKPN~kM~~~~FeGs~iLsQLqCsGm~SVL~L 699 (1259)
T KOG0163|consen 620 SLFPSGSSTSAKQTRGKLKFISVGAKFKTQLSELLDKLESTGTHFIRCIKPNSKMIDRHFEGSAILSQLQCSGMISVLEL 699 (1259)
T ss_pred HHccCCCCCccccccceeeEEehhHHHHHHHHHHHHHHHhcCCeeEEeecCccccccccccHHHHHHHhhhccHHHHHHH
Confidence 9998753332211 256799999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhCCCCccChHHHHHHHhhhhcccCCCCccHHHHHHHHHhhcCCC--CceeccceeeecccccccccchhhhcchhhHH
Q 001692 302 SCAGYPTRKPFDEFVDRFGILASKVLDGSSDEVTACKRLLEKVGLE--GYQIGKTKVFLRAGQMADLDARRTEVLGRSAS 379 (1027)
Q Consensus 302 ~~~Gyp~r~~~~~F~~ry~~l~~~~~~~~~~~~~~~~~il~~~~~~--~~~iG~TkVFlr~~~~~~Le~~r~~~l~~aa~ 379 (1027)
+..|||+|.+|.+.+.-|.-.+|..+. ..|++-.|+.+...++++ +|+||.||||||+|.++.++++....-.....
T Consensus 700 Mq~GyPSR~~F~dLYamYkk~lPpkLa-rLdpRlFck~lF~aLgL~q~DfkFGlTKVFFr~GKFaEFDqiMksDPe~m~~ 778 (1259)
T KOG0163|consen 700 MQHGYPSRTSFADLYAMYKKVLPPKLA-RLDPRLFCKALFQALGLDQNDFKFGLTKVFFRPGKFAEFDQIMKSDPETMLE 778 (1259)
T ss_pred HhcCCCccccHHHHHHHHHhhCCHhhh-cCChHHHHHHHHHHhCCCcccccccceeEeecCcchHHHHHHHhcCHHHHHH
Confidence 999999999999999999988887554 468999999999999986 89999999999999999999876665555555
Q ss_pred HHHHHhhhcccchhhhhhchhhHHHHHHHHhhhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 001692 380 IIQRKVRSYLSRKNYIMLRRSAIHIQAACRGQLARTVYESMRREASCLRIQRDLRMYLAKKAYKDMCFSA 449 (1027)
Q Consensus 380 ~IQ~~~R~~l~R~~y~~~r~a~i~iQ~~~Rg~laR~~~~~~r~~~Aai~IQ~~~R~~~~rk~y~~~r~a~ 449 (1027)
.|++ +..|+.+.++++...++..+-..--.. .-+..+++++|++.|||++|+++.......
T Consensus 779 lv~k-Vn~WLv~sRWkk~q~~a~sVIKLkNkI--------~yRae~v~k~Q~~~Rg~L~rkr~~~ri~~~ 839 (1259)
T KOG0163|consen 779 LVAK-VNKWLVRSRWKKSQYGALSVIKLKNKI--------IYRAECVLKAQRIARGYLARKRHRPRIAGI 839 (1259)
T ss_pred HHHH-HHHHHHHhHHHHhhhhhhheeehhhHH--------HHHHHHHHHHHHHHHHHHHHhhhchHHHHH
Confidence 5544 567788877766654433221111000 113457888999999999999887655443
No 21
>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. The globular head is well conserved, some highly-conserved regions possibly relating to functional and structural domains []. The rod-like tail starts with an invariant proline residue, and contains many repeats of a 28 residue region, interrupted at 4 regularly-spaced points known as skip residues. Although the sequence of the tail is not well conserved, the chemical character is, hydrophobic, charged and skip residues occuring in a highly ordered and repeated fashion [].; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 1LKX_A 2V26_A 2BKI_A 3L9I_A 2BKH_A 2X51_A 2VB6_A 2VAS_A 1OE9_A 1W8J_A ....
Probab=100.00 E-value=8.2e-86 Score=812.74 Aligned_cols=359 Identities=51% Similarity=0.866 Sum_probs=318.6
Q ss_pred CCCHHHHHHHHhhceEeecCceEEecCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcCCCC-CCCcccccccccCCcc
Q 001692 1 MCDAKALEDSLCKREIVTRDETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQDP-NSKSLIGVLDIYGFES 79 (1027)
Q Consensus 1 ~~d~~~l~~~l~~r~~~~~~e~i~~~l~~~~a~~~rdalak~lY~~LF~wlV~~iN~~l~~~~-~~~~~IgiLDi~GFE~ 79 (1027)
|||+++|.++||+|++.+++|.+++++++++|..+||+|||+||++||+|||++||.+|++.. ....+||||||||||+
T Consensus 297 gv~~~~L~~~l~~~~~~~~~e~~~~~~~~~~a~~~rdalak~LY~~LF~wIV~~iN~~L~~~~~~~~~~IgILDi~GFE~ 376 (689)
T PF00063_consen 297 GVDSEELEKALTTRTIKVGGETVTKPLSVEQASDARDALAKALYSRLFDWIVERINSALSPSESENSSSIGILDIFGFEN 376 (689)
T ss_dssp TS-HHHHHHHHHSEEEESTTSEEEEE-BHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--SS-S-SEEEEEEEEE-B--
T ss_pred CCCHHHHHHHHhhccccccccccccccchhhhhhhhhhhhhhhhhHHHHHHHHhhhhccccccccccccCcccCcccccc
Confidence 799999999999999999999999999999999999999999999999999999999998765 6788999999999999
Q ss_pred ccCCchhHhHhhhchHHHHhHHHHhhhhhhHhHhhhcCCccccccc-cCcHHHHHHhhcCCcchhhhhHhhhcCCCCChH
Q 001692 80 FKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEF-VDNQDILDLIEKKPGGIIALLDEACMFPRSTHE 158 (1027)
Q Consensus 80 f~~NsfeqlciNyanEkLq~~f~~~~f~~eq~ey~~E~i~~~~i~~-~dn~~~ldli~~~~~Gil~lLdee~~~~~~td~ 158 (1027)
|..||||||||||||||||++|++++|+.|+++|.+|||+|+.++| .||++|||||+++|.|||++|||||.+|++||+
T Consensus 377 ~~~N~fEQLciNyanErLq~~f~~~~f~~e~~~y~~EgI~~~~i~~~~dn~~~ldLi~~~~~Gil~lLdee~~~~~~sd~ 456 (689)
T PF00063_consen 377 FSVNSFEQLCINYANERLQQFFNQHIFKSEQEEYKEEGIDWPFIDFNPDNQPCLDLIEKKPKGILSLLDEECLLPRGSDE 456 (689)
T ss_dssp -SSB-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCSCS-GCGHHHHHHHHHHSSTTSHHHHHHHHCTSTTS-HH
T ss_pred ccccccccceeeeccccccceeeeecccccccccccccccccccccccCchhhhhhhccccCCHHHHhhhhhhcccchhh
Confidence 9999999999999999999999999999999999999999999999 999999999999999999999999999999999
Q ss_pred HHHHHHHHHh-cCCCCCCCCC----CCCCCeEEEeeccceeEeccchhhhhcchhhHHHHHHHhhcCCccccccccccch
Q 001692 159 TFAQKLYQTF-KNHKRFSKPK----LARSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCSFVSSLFLPLAE 233 (1027)
Q Consensus 159 ~~~~kl~~~~-~~~~~~~~~~----~~~~~F~i~H~ag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~ 233 (1027)
+|++++...+ ++|+.|.+|+ .+...|+|+||||+|+|++.||++||+|.++++++++|+.|+++||+.||+....
T Consensus 457 ~fl~kl~~~~~~~~~~~~~~~~~~~~~~~~F~I~HyaG~V~Y~v~gfleKNrD~l~~~~~~ll~~S~n~~v~~lf~~~~~ 536 (689)
T PF00063_consen 457 SFLEKLLKRHSGKHPSFVKPRFSRSTSKSSFTIKHYAGDVTYDVEGFLEKNRDPLSQDFVSLLRSSTNSFVSSLFSSEAT 536 (689)
T ss_dssp HHHHHHHHHHTTTSTTEECTSSSTSSTTSCEEEEETTEEEEEE-TTHHHHHHE-S-HHHHHHHHTSSSHHHHHHTHSHHH
T ss_pred HHHHHHHhhcccCCCcccccccccccCCCceEeecccCcceeccccccccccchHHHHHHHHHHhCcCcccccccccccc
Confidence 9999999999 8899998885 3678999999999999999999999999999999999999999999999986532
Q ss_pred h---------------------ccCCCCCcchhHHHHHHHHHHHHHhccCCCeeeEecCCCCCCCCCcccccchhhhhhc
Q 001692 234 E---------------------SSKTSKFSSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLRC 292 (1027)
Q Consensus 234 ~---------------------~~~~~~~~tv~~~f~~~l~~L~~~l~~t~~hfIrCikpN~~~~~~~fd~~~V~~QLr~ 292 (1027)
. .....+.+||+++|+.+|+.||++|++|+||||||||||+.+.|+.||..+|++||++
T Consensus 537 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~~qf~~sL~~L~~~L~~t~~hfIrCIkPN~~~~~~~FD~~~V~~QLr~ 616 (689)
T PF00063_consen 537 ATSSSSSSLSRRSSSSSTQSRSSGSKKKKSTVSSQFRSSLDELMDTLRSTQPHFIRCIKPNDQKKPNQFDSKLVLRQLRY 616 (689)
T ss_dssp ---S-S-S-BTTTTCCCTTSSCCCGGTCSSBHHHHHHHHHHHHHHHHCTSEEEEEEEE-SSSS--TT---HHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccHHHHHhhhhhcccceEEEeccccccccccccchheehhhhh
Confidence 0 0011255899999999999999999999999999999999999999999999999999
Q ss_pred cchhhHHHHHhhCCCCccChHHHHHHHhhhhcccCCC----CccHHHHHHHHHhhcCC--CCceeccceeeec
Q 001692 293 GGVMEAIRISCAGYPTRKPFDEFVDRFGILASKVLDG----SSDEVTACKRLLEKVGL--EGYQIGKTKVFLR 359 (1027)
Q Consensus 293 ~gvle~iri~~~Gyp~r~~~~~F~~ry~~l~~~~~~~----~~~~~~~~~~il~~~~~--~~~~iG~TkVFlr 359 (1027)
+||+|++++++.|||+|++|.+|++||++|++..... ..++++.|+.||..+++ ++|++|+||||||
T Consensus 617 ~gile~vri~~~Gyp~r~~~~eF~~RY~~L~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~iG~TkVFLk 689 (689)
T PF00063_consen 617 SGILETVRIRRQGYPVRLTFDEFLRRYKCLLPSSSSSSDSSKEDDKEACEALLEQLDLESSDYQIGKTKVFLK 689 (689)
T ss_dssp TTHHHHHHHHHCSSSEEEEHHHHHHHHGGGSTTCSHSS--HCSSHHHHHHHHHHHTTSEGTCEEEESSEEEEC
T ss_pred hhhhhhhhhhhcccceecchhhhhhhhceechhhcccccccCCCHHHHHHHHHHhCCCCccCEEECCcEEEEC
Confidence 9999999999999999999999999999999986532 46899999999999988 5899999999996
No 22
>KOG4229 consensus Myosin VII, myosin IXB and related myosins [Cell motility]
Probab=100.00 E-value=4.7e-52 Score=505.21 Aligned_cols=456 Identities=30% Similarity=0.418 Sum_probs=379.2
Q ss_pred CCHHHHHHHHhhceEeecCceEEecCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcCCCCC--CCcccccccccCCcc
Q 001692 2 CDAKALEDSLCKREIVTRDETITKWLDPEAAAVSRDALAKIVYSRLFDWLVEKINNSIGQDPN--SKSLIGVLDIYGFES 79 (1027)
Q Consensus 2 ~d~~~l~~~l~~r~~~~~~e~i~~~l~~~~a~~~rdalak~lY~~LF~wlV~~iN~~l~~~~~--~~~~IgiLDi~GFE~ 79 (1027)
++...|.+++|.++.+++||.+..++++++|..+||++||+||++||.|||.+||..+.++.. ....||||||||||+
T Consensus 360 ~~~~~l~~alt~~~~~~~ge~~~~~l~~~~A~d~rda~ak~ly~~lf~~iv~rIn~~~~~~~~~~~~~~IgiLdiFgfE~ 439 (1062)
T KOG4229|consen 360 IKEKLLQEALTARVNVTRGELLLAPLLVERAVDVRDAMAKTLYGRLFDWIVLRINAALSPESDISDILSIGILDIFGFEN 439 (1062)
T ss_pred cCHHHhhhhhcccceeeehhhhhhhhhHHHhccCchHHHHHHHHHHHHHHHhhHHhccCccccccccceeehhhhhcccc
Confidence 678899999999999999999999999999999999999999999999999999999976544 368999999999999
Q ss_pred ccCCchhHhHhhhchHHHHhHHHHhhhhhhHhHhhhcCCccccccccCcHHHHHHhhcCCcchhhhhHhhhcCCCCChHH
Q 001692 80 FKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEFVDNQDILDLIEKKPGGIIALLDEACMFPRSTHET 159 (1027)
Q Consensus 80 f~~NsfeqlciNyanEkLq~~f~~~~f~~eq~ey~~E~i~~~~i~~~dn~~~ldli~~~~~Gil~lLdee~~~~~~td~~ 159 (1027)
|..|||||+|||||||+||.+|++|||.+||+||..|+|+|..|.|.||..|+|+|..+|.||+.+|||||.+|++||.+
T Consensus 440 f~~nsfEq~~in~Ane~lQ~~fnqhIf~~Eq~ey~~e~I~w~~i~~~dN~~~ldli~~kp~gil~liDees~fP~~td~t 519 (1062)
T KOG4229|consen 440 FERNSFEQLCINLANEQLQYYFNQHIFALEQEEYDNESIDWRNIEFADNRRRLDLISPKPMGILSLIDEESRFPKATDQT 519 (1062)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhcCCCeeeeeeeeccchhhhhccCccchhheecccCcCCchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCCCCCC-CCCeEEEeeccceeEeccchhhhhcchhhHHHHHHHhhcCCccccccccccchhcc--
Q 001692 160 FAQKLYQTFKNHKRFSKPKLA-RSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCSFVSSLFLPLAEESS-- 236 (1027)
Q Consensus 160 ~~~kl~~~~~~~~~~~~~~~~-~~~F~i~H~ag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~~~~-- 236 (1027)
++.|+...++.+..+..|+.. ...|+|.||||.|.|++.||++||+|.++.++..++.+|.+.++..++...+....
T Consensus 520 l~~k~~~q~~~~~~y~~~k~~~e~~f~I~Hyagkv~y~~~~flekNrD~~~~d~~~~~~s~~~~~~~~~~~~~~~~~~~~ 599 (1062)
T KOG4229|consen 520 LLLKLNMQHGSNNLYVFPKSRVETVFGITHYAGKVQYNIRGFLEKNRDTVRNDLVNLLRSSDESLLRQLVNGDPTAVSRW 599 (1062)
T ss_pred HHHHhhhhhhcccccccccccccceeeeeeecceehhhhhhHHHhhhhhhhhhHHhhcccccchhhcccCCCCCccCCcc
Confidence 999999999988777777654 46999999999999999999999999999999999999888877766543210000
Q ss_pred --------------------------------------------------------------C-----------------
Q 001692 237 --------------------------------------------------------------K----------------- 237 (1027)
Q Consensus 237 --------------------------------------------------------------~----------------- 237 (1027)
.
T Consensus 600 ~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~s~l~rg~~~~~~~i~~~~~~~~~ 679 (1062)
T KOG4229|consen 600 FELRALKVAMPVPLEVTLRRPVRKTLTADSSRSAPETTNCLPDKVLPEDRPSLFEELSALARGQDHFMRAISQNPRYALE 679 (1062)
T ss_pred hhhhhhcccccccchhhhccccccccccccccchHHHHHhhhccccccCChhhhcchhhcCCCccchhhhhhcCchhhhh
Confidence 0
Q ss_pred ------C-------------------C--------------C--------------------------------------
Q 001692 238 ------T-------------------S--------------K-------------------------------------- 240 (1027)
Q Consensus 238 ------~-------------------~--------------~-------------------------------------- 240 (1027)
+ . +
T Consensus 680 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 759 (1062)
T KOG4229|consen 680 QGSQERKGPRRLSSRGSTATPSHDRPGRKTNLLYSEVVNGRKNSEYLCSPRPDLAERARVQLLEKNAINMKSERLTTLLP 759 (1062)
T ss_pred hcCcccCchhhhhhcccccCCCCCCccccccccchhhhcccccccccCCCCHHHHHHHHHHHHhhccccchhhhhccccc
Confidence 0 0 0
Q ss_pred ------------CcchhH----------------HHHHHHHHHHHHhccCCCeeeEecCCCCCCCCCcccccchhhhhhc
Q 001692 241 ------------FSSIGS----------------RFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLRC 292 (1027)
Q Consensus 241 ------------~~tv~~----------------~f~~~l~~L~~~l~~t~~hfIrCikpN~~~~~~~fd~~~V~~QLr~ 292 (1027)
...++. .+......++..+....+.|++|++-|..+....|+...|..|+++
T Consensus 760 ~~~~~~~~~~~~~e~~t~~~l~~~~kk~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~ 839 (1062)
T KOG4229|consen 760 RYIPDPCLDPVRRERVTQLRLHQHKKKAFPQPLRSPQVRKSKLESYLAIAKELFVRRFLENQKKIGLRFPDNVVLRQVSY 839 (1062)
T ss_pred ccCccccCCccccchhhhHHHHHhhccccCccccccchhhccchhhhhhhhHHHHHHHHHhhhhhccCCChHHHHHhhhc
Confidence 000111 1223334466667777889999999998778889999999999999
Q ss_pred cchhhHHHHHhhCCCCccChHHHHHHHhhhhcccCCCCccHHHHHHHHHhhc--CCCCceeccceeeecccccccccc-h
Q 001692 293 GGVMEAIRISCAGYPTRKPFDEFVDRFGILASKVLDGSSDEVTACKRLLEKV--GLEGYQIGKTKVFLRAGQMADLDA-R 369 (1027)
Q Consensus 293 ~gvle~iri~~~Gyp~r~~~~~F~~ry~~l~~~~~~~~~~~~~~~~~il~~~--~~~~~~iG~TkVFlr~~~~~~Le~-~ 369 (1027)
.|+.+..++...+|+..+++.+|..-+.+..|.... .........+ +.++++.|++++|+...-...++. .
T Consensus 840 t~~~~~~~v~~~~~~~~i~~~~~~~~~~i~~~~~~~------~v~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~l 913 (1062)
T KOG4229|consen 840 TGELDQEQVRRSLYFAEISPQDSVNQSRIGLPETVD------TVADEEFSTLSCNADTIRLGVHVVFLLLNERSRTEVAL 913 (1062)
T ss_pred hhhhccchheeccccccccchhccccccccCCccch------hhchhheeecccCccchhccceEEeecccchHHHHHHH
Confidence 999999999999999999999999999988773221 1112222222 446899999999998766543332 2
Q ss_pred hhhcchhhHHHHHHHhhhcccchhhhhhchhhHHHHHHHHhhhhhhhhh-hccchhhhhHHHHHHHHHHHHHHHHHHHHH
Q 001692 370 RTEVLGRSASIIQRKVRSYLSRKNYIMLRRSAIHIQAACRGQLARTVYE-SMRREASCLRIQRDLRMYLAKKAYKDMCFS 448 (1027)
Q Consensus 370 r~~~l~~aa~~IQ~~~R~~l~R~~y~~~r~a~i~iQ~~~Rg~laR~~~~-~~r~~~Aai~IQ~~~R~~~~rk~y~~~r~a 448 (1027)
..+....-+...|++++....++.+.++..+.+.+| |++++.|+... ......+++-+|..|+.+..+..+.-.+.+
T Consensus 914 ~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 991 (1062)
T KOG4229|consen 914 KDEANDELSFFKQKWFRLTLERKGLLRLSEGSVLIQ--RLELLGRRTCPVAGAPAVAAASLQNAWPVYRELSGRLGLRRS 991 (1062)
T ss_pred hHhhHHHHHHHHHHHHHhhhccccchhhcchhHHHH--HHHHhcccCCcchhhhhhhhhhccccchhhhhhhhhHHHhhh
Confidence 222222136678999999999999999999999999 88888877554 223445788899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 001692 449 AVCIQTGMRGMAARNEL 465 (1027)
Q Consensus 449 ~~~iQs~~Rg~~aR~~~ 465 (1027)
++.+|..+++...+..+
T Consensus 992 ~~~~~~~~~~~~~~~~~ 1008 (1062)
T KOG4229|consen 992 FIADQSPRSRPAYTMIF 1008 (1062)
T ss_pred hcchhcccccchhhhhH
Confidence 99999988887766554
No 23
>KOG1892 consensus Actin filament-binding protein Afadin [Cytoskeleton]
Probab=99.89 E-value=6.6e-23 Score=235.74 Aligned_cols=216 Identities=20% Similarity=0.394 Sum_probs=176.3
Q ss_pred hhhhhhhhHHHHHHHhh-hccCCCCCCchhHHHHHHHHhhhhh--hhhhh----hHHHHHHHHHHHHhhcccCC-Ccccc
Q 001692 745 HIEHQHENVDALINCVA-KNLGYCNGKPVAAFTIYKCLLHWKS--FEAER----TSVFDRLIQMIGSAIENEDD-NDHMA 816 (1027)
Q Consensus 745 l~e~~~e~~~~Ll~~i~-~~~~~~~~~p~pA~ii~~c~~~~~~--~~~~~----~~ll~~i~~~I~~~i~~~~~-~~~la 816 (1027)
-+|+.+..++-.|..++ .+.+.+.++.+|-|- |..-.|++. +..++ +.||.++.+.+..+++.+.+ -..|+
T Consensus 542 si~~~d~~~~sfL~~vi~~~a~t~~~~~s~~y~-y~~S~~yrp~~~pTer~hk~i~f~~~~~s~~~~viQeq~~~~~~La 620 (1629)
T KOG1892|consen 542 SIEFRDSSEDSFLSAVINTNASTVHFKLSPTYR-YVLSNQYRPDISPTERTHKVIAFVNKMVSMMEGVIQEQKNIAGALA 620 (1629)
T ss_pred ceecccCcHHHHHHHHHhCcccccccccCcccc-hhhhcccccccCccccchhHHHHHHHHHHHHHHHHHHhhcccchhH
Confidence 34677777777787777 566666677777652 444445554 55555 58999999999999997754 55999
Q ss_pred hhhhhHHHHHHHHHHHHhhcCCCCCCCCCCCCCcccchhhcccccCCCCCchhhhhhhHHHHHHHHhhcchhHHHHHHHH
Q 001692 817 YWLSNTSTLLFLLQRSLKAAGASGATPHKKPPTATSLFGRMAMGFRSSPSSANLAAAAALAVVRQVEAKYPALLFKQQLA 896 (1027)
Q Consensus 817 fWLsN~~~Ll~~lq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~f~q~L~ 896 (1027)
|||+|.+++|||++++-..+ .+. +.-+..|.
T Consensus 621 FWmANaSEflhfik~Dr~ls--------------------------------~~~-----------------~~aq~vla 651 (1629)
T KOG1892|consen 621 FWMANASEFLHFIKQDRDLS--------------------------------RIT-----------------LDAQDVLA 651 (1629)
T ss_pred HhhcCHHHHHHHHHhccchh--------------------------------hee-----------------hhHHHHHH
Confidence 99999999999998851111 110 02346688
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCCCCCcccCCCCCCCCCccccHHHHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 001692 897 AYVEKIYGIIRDNLKKELSSLLSLCIQAPRTSKGSVLRSGRSFGKDSASSHWQSIIDSLNTLLSTLKQNFVPPVLVQKIF 976 (1027)
Q Consensus 897 ~~~~~iy~~l~~~~~k~L~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~L~~~~~~l~~~~v~~~l~~Q~f 976 (1027)
..|+.+|..|+.+++.+|++.++..++.... ..+..++|+.+|+..|.+|+.|+|+..|++|+|
T Consensus 652 ~~vq~aFr~LV~clqsel~~~~~afLden~~----------------~~~a~gdVlh~L~~aM~llRrCrvNAALTIQLf 715 (1629)
T KOG1892|consen 652 HLVQMAFRYLVHCLQSELNNYMPAFLDENSL----------------QRPAIGDVLHTLTGAMSLLRRCRVNAALTIQLF 715 (1629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccc----------------cCccccchHHHhHHHHHHHHHhccchHHHHHHH
Confidence 8999999999999999999999999875333 234456999999999999999999999999999
Q ss_pred HHHHHhhhHHHhHhhhhc--CCCCCCchhhHHhhchhHHHHHHhhhhhcccc
Q 001692 977 TQTFSYINVQLFNSLLLR--RECCTFSNGEYVKAGLAELELWCCQAKEEVIF 1026 (1027)
Q Consensus 977 ~Qlf~~in~~lfN~Ll~r--~~~cs~s~g~qIr~nls~Le~W~~~~~~e~~~ 1026 (1027)
+|||||||+++||+|+.. ..+|+--||--|++.|..||.||...|+|+|+
T Consensus 716 sqLfH~iN~~~FN~lVt~~~s~~cs~~wGk~~~~rl~~ie~waErqGlElAA 767 (1629)
T KOG1892|consen 716 SQLFHFINMWLFNRLVTDPDSGLCSHYWGKIIRQRLGHIEAWAERQGLELAA 767 (1629)
T ss_pred HHHHHHHHHHHhhhhcccCchhhhhhhHHHHHHHHHHHHHHHHHHhcchHhh
Confidence 999999999999999998 78999999999999999999999999999986
No 24
>PF01843 DIL: DIL domain; InterPro: IPR018444 Dilute encodes a novel type of myosin heavy chain, with a tail, or C-terminal, region that has elements of both type II (alpha-helical coiled-coil) and type I (non-coiled-coil) myosin heavy chains. The DIL non alpha-helical domain is found in dilute myosin heavy chain proteins and other myosins. In mouse the dilute protein may play a role in the elaboration, maintenance, or function of cellular processes of melanocytes and neurons []. The MYO2 protein of Saccharomyces cerevisiae is implicated in vectorial vesicle transport and is homologous to the dilute protein over practically its entire length [].; PDB: 3MMI_B 2F6H_X.
Probab=99.49 E-value=7.4e-15 Score=137.37 Aligned_cols=52 Identities=46% Similarity=0.793 Sum_probs=48.9
Q ss_pred HHHHHHHHhhhHHHhHhhhhcCCCCCCchhhHHhhchhHHHHHHhhhhhccc
Q 001692 974 KIFTQTFSYINVQLFNSLLLRRECCTFSNGEYVKAGLAELELWCCQAKEEVI 1025 (1027)
Q Consensus 974 Q~f~Qlf~~in~~lfN~Ll~r~~~cs~s~g~qIr~nls~Le~W~~~~~~e~~ 1025 (1027)
|+|+|||||||+.+||+||.|+++|+|++|+|||+||+.||+||+++|++.+
T Consensus 1 Q~f~qlf~~i~~~~fN~ll~~~~~~~~~~g~qi~~nls~l~~W~~~~~l~~~ 52 (105)
T PF01843_consen 1 QLFSQLFHYINASLFNSLLLRRKYCSWSKGVQIRYNLSELEDWARSHGLEEA 52 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHSS-B-HHHHHHHHHHHHHHHHCCCCTTSTTH
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCccccccHHHHHHHHHHHHHHHHhcccchh
Confidence 8999999999999999999999999999999999999999999999999876
No 25
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=99.16 E-value=1.5e-07 Score=122.95 Aligned_cols=563 Identities=17% Similarity=0.177 Sum_probs=252.2
Q ss_pred hhhchHHHHhHHHHhhhhhhHhHhhhcCCccccccccCcHHHHHHhhcCCcchhhhhHhhhcCCCCChH---HH-HHHHH
Q 001692 90 INLTNEKLQQHFNQHVFKMEQEEYSKEAINWSYIEFVDNQDILDLIEKKPGGIIALLDEACMFPRSTHE---TF-AQKLY 165 (1027)
Q Consensus 90 iNyanEkLq~~f~~~~f~~eq~ey~~E~i~~~~i~~~dn~~~ldli~~~~~Gil~lLdee~~~~~~td~---~~-~~kl~ 165 (1027)
.+++=+-+....+..+|.. ...+...+++|+ .+-..+|.+++-...-||.+ ++-.+ .| .+||.
T Consensus 413 ~~~~v~alAk~lYerlF~w-lV~riN~sld~~----~~~~~fIgvLDiaGFEIfe~--------nSFEQLciNytnEkLQ 479 (1930)
T KOG0161|consen 413 VLFAVEALAKALYERLFGW-LVKRINKSLDSK----QQRDYFIGVLDIAGFEIFEF--------NSFEQLCINYTNEKLQ 479 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhc----cccCCcceeeeeccccccCc--------CCHHHHHHHHHHHHHH
Confidence 7788888887777777754 667778888886 44555665555433222221 11111 01 23444
Q ss_pred HHhcCCCCCCCCC----CCCCCeEEEeeccceeEeccchhhhhcchhh--HHHHHHHhhcCCccccccccccchhccCCC
Q 001692 166 QTFKNHKRFSKPK----LARSDFTICHYAGDVTYQTELFLDKNKDYVV--AEHQALLSASKCSFVSSLFLPLAEESSKTS 239 (1027)
Q Consensus 166 ~~~~~~~~~~~~~----~~~~~F~i~H~ag~V~Y~~~~fl~kN~d~~~--~~~~~ll~~S~~~~v~~lf~~~~~~~~~~~ 239 (1027)
+-| +|..|..-. --.-.++.-||+-+. =.+.+.|+|=...++ ++-.-+..+|...|+..|+...- ++.+
T Consensus 480 qfF-nh~mFvlEqeeY~~EgIew~fidfG~Dl-q~~idLIEkp~Gi~slLdEEc~~PkAtd~tf~~kL~~~~~---gk~~ 554 (1930)
T KOG0161|consen 480 QFF-NHHMFVLEQEEYQREGIEWDFIDFGLDL-QPTIDLIEKPMGILSLLDEECVVPKATDKTFLEKLCDQHL---GKHP 554 (1930)
T ss_pred hhh-cchhhhhhHHHHHHhCCceeeeccccch-hhhHHHHhchhhHHHHHHHHHhcCCCccchHHHHHHHHhh---ccCc
Confidence 433 454554211 012356666663222 122333444222111 11111223455555555544321 1222
Q ss_pred CCcchhHHHHHHHHHHHHHhccCCCeeeEecCCCCCCCCCcccccchhhhhhccchhhHHHHHhhCCCCccChHHHHHHH
Q 001692 240 KFSSIGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENKNVLQQLRCGGVMEAIRISCAGYPTRKPFDEFVDRF 319 (1027)
Q Consensus 240 ~~~tv~~~f~~~l~~L~~~l~~t~~hfIrCikpN~~~~~~~fd~~~V~~QLr~~gvle~iri~~~Gyp~r~~~~~F~~ry 319 (1027)
+|.... ......-+...+-+.+ |+|.-+|-..++..-.+..|..+|++++ .+.|..--.| +..++.+..++
T Consensus 555 ~f~~~k---~~~~~~~F~l~HyaG~--V~Y~~~~WL~Knkdpln~~v~~ll~~s~-~~~v~~l~~~---~~~~~~~~~~~ 625 (1930)
T KOG0161|consen 555 KFQKPK---GKKAEAHFALVHYAGT--VDYNVDGWLEKNKDPLNDNVVSLLKQST-NKLVSSLFQD---YAGAAAAAKGG 625 (1930)
T ss_pred cccCcc---cccchhhhheeeecce--eccCccchhhcCCCCchHHHHHHHHhcc-cHHHHHHhhh---hhccchhhhhh
Confidence 222211 2233444444444444 9999999988888888899999999999 8888776555 66677776666
Q ss_pred hhhhcccCCCC-----ccHHHHHHHHHhhcCCCCceeccceeee---ccccc---ccccchhhhcchhhHHHHHHHhhhc
Q 001692 320 GILASKVLDGS-----SDEVTACKRLLEKVGLEGYQIGKTKVFL---RAGQM---ADLDARRTEVLGRSASIIQRKVRSY 388 (1027)
Q Consensus 320 ~~l~~~~~~~~-----~~~~~~~~~il~~~~~~~~~iG~TkVFl---r~~~~---~~Le~~r~~~l~~aa~~IQ~~~R~~ 388 (1027)
.. ......+. .-.++....++..+.-+.-.|=+--|+. ++|++ ..|.++|..-+-. ++.|.+ .||
T Consensus 626 ~~-~~~~K~g~F~Tvs~~~keql~~Lm~~l~~T~phFvRCiIPn~~K~~g~ld~~lvl~QLrcngVLE-gIRicR--~Gf 701 (1930)
T KOG0161|consen 626 EA-LKKTKKGSFRTVSQLYKEQLNKLMTTLRSTHPHFVRCIIPNEEKKPGKLDAPLVLNQLRCNGVLE-GIRICR--QGF 701 (1930)
T ss_pred hh-hcccCCcchhhHHHHHHHHHHHHHHHhccCCCceeEEeccCccccccccCHHHHHHHhhccCcHH-HHHHHH--hhC
Confidence 54 21111111 1123333444443332211111111111 01111 2233333322221 122222 355
Q ss_pred ccchhhhhhchhhHHHHHHH--Hhhhh-----hhhhhhccc-------hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001692 389 LSRKNYIMLRRSAIHIQAAC--RGQLA-----RTVYESMRR-------EASCLRIQRDLRMYLAKKAYKDMCFSAVCIQT 454 (1027)
Q Consensus 389 l~R~~y~~~r~a~i~iQ~~~--Rg~la-----R~~~~~~r~-------~~Aai~IQ~~~R~~~~rk~y~~~r~a~~~iQs 454 (1027)
-.|..|...+.---.+.... .|+.. ++.+..+-. ...=+...+-+-+.+--.+=.++...++.+|+
T Consensus 702 Pnr~~~~eFrqRy~lla~~~~~~~~~d~k~~~~~~~~~l~~d~~lyriG~tKvFfkaGvla~LEe~Rd~~ls~ii~~fQA 781 (1930)
T KOG0161|consen 702 PNRMPFQEFRQRYELLAADEPKKGFSDGKKACEKILEELLLDKNLYRIGHTKVFFKAGVLAHLEEMRDEKLSQIITLFQA 781 (1930)
T ss_pred ccccchHHHHHhHHhhhhhhccccccccchhHHHHHHHHhcccceEeecceeeeehHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55544433211000111110 11111 000000000 00001111111222222333445556778899
Q ss_pred HHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHh--h-hhHHHHHhhhHHHHHHHHH---HHH----HHHHHHHH
Q 001692 455 GMRGMAARNELRFRR-QTRASILIQSHCRKYLARLHYMK--L-KKAAITTQCAWRGKVARRE---LRK----LKMAARET 523 (1027)
Q Consensus 455 ~~Rg~~aR~~~~~~r-~~~aa~~IQ~~~R~~~~r~~~~~--~-~~a~i~iQ~~~R~~~arke---l~~----l~~~a~~~ 523 (1027)
.+||+++|+.+..+. +..|+.+||+..|.|...+.|-= + .+.--.+++..+....++. +.. +...+...
T Consensus 782 ~~Rg~l~r~~~~kr~~~~~ai~~iQ~N~r~~~~lr~w~W~~Lf~kvkPLL~~~~~ee~~~~~~~e~~~l~~~l~~~e~~~ 861 (1930)
T KOG0161|consen 782 AIRGYLARKEFKKRLQQLDAIKVIQRNIRAYLKLRTWPWWRLFTKVKPLLKVTKTEEEMRAKEEEIQKLKEELQKSESKR 861 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhhhHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 999999998885554 44678889999998876654311 1 1111112222111111111 111 11112222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhcc
Q 001692 524 GALQAAKNKLEKQVEELTWRLQLEKRMRVDMEE---AKTQENAKLQSALQEMQLQFKESKEKLMK---EIEVAKKEAEKV 597 (1027)
Q Consensus 524 ~~L~~~k~~LE~kv~el~~rl~~e~~~~~ele~---~~~~e~~~L~~~l~~le~~l~~~~~~l~~---e~~~~~~~~ee~ 597 (1027)
..+.....+++.+..+++..+..|+....+.++ ....+...++..+.+++.+++..+..... +..+.+...+.+
T Consensus 862 ~ele~~~~~~~~e~~~l~~~l~~e~~~~~~aee~~~~~~~~k~~le~~l~~~~~~~e~~ee~~~~le~~~~~~~~e~~~l 941 (1930)
T KOG0161|consen 862 KELEEKLVKLLEEKNDLQEQLQAEKENLAEAEELLERLRAEKQELEKELKELKERLEEEEEKNAELERKKRKLEQEVQEL 941 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 223333334444455555555544433322222 23344555666666666666655543211 111111112111
Q ss_pred ccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001692 598 PVVQEVPVIDHAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETS-------KISEERLKQALEAESKIVQLKTAMHRL 670 (1027)
Q Consensus 598 ~~~~e~~~~~~~~~~~L~~e~~kLe~~l~~l~~~l~elek~~~ele-------~~~~~~~~~l~~~~~~~~~l~~~~~~L 670 (1027)
++.....+.....+..++..++..+..+++.+..++..+.++- ...+++...+...++++..+.+....+
T Consensus 942 ---~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~~~e~~~kL~kekk~lEe~~~~l~~~l~~~eek~~~l~k~~~kl 1018 (1930)
T KOG0161|consen 942 ---KEQLEELELTLQKLELEKNAAENKLKNLEEEINSLDENISKLSKEKKELEERIRELQDDLQAEEEKAKSLNKAKAKL 1018 (1930)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111112334445555555555555555555555444444444 444444444555555666666666666
Q ss_pred HHHHHhHHHHHHHHHH
Q 001692 671 EEKVSDMETENQILRQ 686 (1027)
Q Consensus 671 ee~l~~le~e~~~L~q 686 (1027)
+..+..++..++..++
T Consensus 1019 e~~l~~le~~le~e~~ 1034 (1930)
T KOG0161|consen 1019 EQQLDDLEVTLEREKR 1034 (1930)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6666666666654444
No 26
>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton]
Probab=98.53 E-value=4.7e-06 Score=101.73 Aligned_cols=85 Identities=39% Similarity=0.522 Sum_probs=80.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHhhh
Q 001692 424 ASCLRIQRDLRMYLAKKAYKDMCFSAVCIQTGMRGMAARNELRFRRQTRASILIQSHCRKYLARLHYMKLKKAAITTQCA 503 (1027)
Q Consensus 424 ~Aai~IQ~~~R~~~~rk~y~~~r~a~~~iQs~~Rg~~aR~~~~~~r~~~aa~~IQ~~~R~~~~r~~~~~~~~a~i~iQ~~ 503 (1027)
.+++.||+.+|+|..|+.|.+++.+++.+|+.+||.++|+ ... +..||+.||+.||++..|+.|...+.+++.+|+.
T Consensus 674 ~~~~~iq~~~r~~~~r~~f~~~r~~~~~~Q~~~rG~~~r~--~~~-~~~aai~~q~~~r~~~~r~~y~~~~~~~~~~qs~ 750 (862)
T KOG0160|consen 674 AAKVLIQRQIRGYLARKKFLQLRSAVIIIQAYSRGVLARR--ETE-REAAAIGIQKECRSYLNRRRYRALIPASITIQSG 750 (862)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH--hhH-HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5778899999999999999999999999999999999999 233 7789999999999999999999999999999999
Q ss_pred HHHHHHHH
Q 001692 504 WRGKVARR 511 (1027)
Q Consensus 504 ~R~~~ark 511 (1027)
+|++.+|.
T Consensus 751 ~r~~~~r~ 758 (862)
T KOG0160|consen 751 VRAMLARN 758 (862)
T ss_pred HHHHHhcc
Confidence 99999988
No 27
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=98.22 E-value=0.0006 Score=86.28 Aligned_cols=88 Identities=23% Similarity=0.166 Sum_probs=70.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHh-h
Q 001692 424 ASCLRIQRDLRMYLAKKAYKDMCFSAVCIQTGMRGMAARNELRFRRQTRASILIQSHCRKYLARLHYMKLKKAAITTQ-C 502 (1027)
Q Consensus 424 ~Aai~IQ~~~R~~~~rk~y~~~r~a~~~iQs~~Rg~~aR~~~~~~r~~~aa~~IQ~~~R~~~~r~~~~~~~~a~i~iQ-~ 502 (1027)
.+++.||+.|||+..|++|.+.......+|...+|+..++.+..-.-..++..+|..|+....|..|......+..+| .
T Consensus 746 ~~~~~iq~aiR~~~~rrr~~~~~k~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~r~~~~~~~~~i~~lq~~ 825 (1463)
T COG5022 746 NIATRIQRAIRGRYLRRRYLQALKRIKKIQVIQHGFRLRRLVDYELKWRLFIKLQPLLSLLGSRKEYRSYLACIIKLQKT 825 (1463)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhcccchHHHhHHHhhHHhHHHhhHHHHHHHHHHHHHHHHH
Confidence 478888888888888888888888888888888888888777666666788888888888888888888888888888 5
Q ss_pred hHHHHHHHH
Q 001692 503 AWRGKVARR 511 (1027)
Q Consensus 503 ~~R~~~ark 511 (1027)
.++...++.
T Consensus 826 i~~~~~~~~ 834 (1463)
T COG5022 826 IKREKKLRE 834 (1463)
T ss_pred HHHHHHHhH
Confidence 555555444
No 28
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=98.19 E-value=2.3e-06 Score=104.30 Aligned_cols=129 Identities=26% Similarity=0.347 Sum_probs=88.9
Q ss_pred hcchhhHHHHHHHhhhcccchhhhhhchhhHHHHHHHHhhhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001692 372 EVLGRSASIIQRKVRSYLSRKNYIMLRRSAIHIQAACRGQLARTVYESMRREASCLRIQRDLRMYLAKKAYKDMCFSAVC 451 (1027)
Q Consensus 372 ~~l~~aa~~IQ~~~R~~l~R~~y~~~r~a~i~iQ~~~Rg~laR~~~~~~r~~~Aai~IQ~~~R~~~~rk~y~~~r~a~~~ 451 (1027)
.....++..||.++|+|..|+.|..++.-++.||+.+||+-.|+.|..+-. =-...++ +..++..
T Consensus 807 r~~~~aa~~iq~~f~~yk~r~~~l~tr~p~v~iqa~~rg~q~r~dy~ki~w-----------Sv~~lek----~~lrwR~ 871 (975)
T KOG0520|consen 807 RSDPAAASRIQKKFRGYKQRKEFLSTRQPIVKIQAAVRGYQVRKDYRKITW-----------SVGVLEK----LILRWRR 871 (975)
T ss_pred ccchhHHHHhhhhhhhHHhhhhhcccCCccccchhhhhchhHhhhhheech-----------hhhHHHH----HHHHHHH
Confidence 345578899999999999999999999999999999999999888865431 1111222 2223445
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--HHHHhhhhHHHHHhhhHHHHHHHHHHHHHH
Q 001692 452 IQTGMRGMAARNELRFRRQTRASILIQSHCRKYLAR--LHYMKLKKAAITTQCAWRGKVARRELRKLK 517 (1027)
Q Consensus 452 iQs~~Rg~~aR~~~~~~r~~~aa~~IQ~~~R~~~~r--~~~~~~~~a~i~iQ~~~R~~~arkel~~l~ 517 (1027)
+|+.+||+..|...... ..|++.||...|.|+.- ..|.++.++++.||+.+|...++.+++++.
T Consensus 872 k~~g~Rgfk~~~~~e~~--~~a~t~~e~~yd~yKq~~~~~~~r~~~A~~~VQsm~rs~~a~qqyrR~~ 937 (975)
T KOG0520|consen 872 KGKGFRGFKGRALFEEQ--ETAATVIEDCYDFYKQLRKQTEERLTRAVVRVQSMFRSPKAQQQYRRLL 937 (975)
T ss_pred hhhhhcccccccchhcc--ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 66667777666654332 23677777777777665 556666777777777777777776665554
No 29
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=98.09 E-value=0.0049 Score=73.96 Aligned_cols=58 Identities=21% Similarity=0.300 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001692 526 LQAAKNKLEKQVEELTWR---LQLEKRMRVDMEEAKTQENAKLQSALQEMQLQFKESKEKL 583 (1027)
Q Consensus 526 L~~~k~~LE~kv~el~~r---l~~e~~~~~ele~~~~~e~~~L~~~l~~le~~l~~~~~~l 583 (1027)
.++.+.+....+.+.... +..++++..+..+....|...+++++++|+..++-+++++
T Consensus 295 aqe~ke~~k~emad~ad~iEmaTldKEmAEERaesLQ~eve~lkEr~deletdlEILKaEm 355 (1243)
T KOG0971|consen 295 AQEAKERYKEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELETDLEILKAEM 355 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444443433333333 3355566555555666777778888888877777666554
No 30
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=97.80 E-value=2.6e-05 Score=95.37 Aligned_cols=128 Identities=19% Similarity=0.185 Sum_probs=95.7
Q ss_pred hhHHHHHHHhhhcccchhhhh-hc-----------hhhHHHHHHHHhhhhhhhhhhccchhhhhHHHHHHHHHHHHHHHH
Q 001692 376 RSASIIQRKVRSYLSRKNYIM-LR-----------RSAIHIQAACRGQLARTVYESMRREASCLRIQRDLRMYLAKKAYK 443 (1027)
Q Consensus 376 ~aa~~IQ~~~R~~l~R~~y~~-~r-----------~a~i~iQ~~~Rg~laR~~~~~~r~~~Aai~IQ~~~R~~~~rk~y~ 443 (1027)
.+|..||..+|...-++.-.+ +. ...+.++..++ .....+...||..||.++|+|..|+.|.
T Consensus 757 ~aa~r~q~vfr~~~~~~~~a~~i~~~~~~~i~~~~~~~m~~~~a~~------~~~~r~~~~aa~~iq~~f~~yk~r~~~l 830 (975)
T KOG0520|consen 757 QAAARIQAVFRAQSFQKKQAREIMDATKEQISEELAVSMKASSAFS------MCDDRSDPAAASRIQKKFRGYKQRKEFL 830 (975)
T ss_pred HHHHhhhhhhhhhhhhhhhHHHHHhhcchhhhhhhhhhhhcccchh------cCccccchhHHHHhhhhhhhHHhhhhhc
Confidence 567889999887755433221 11 12222333333 2233445678999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--------HHhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHhhhHHHHHH
Q 001692 444 DMCFSAVCIQTGMRGMAARNELRF--------RRQTRASILIQSHCRKYLARLHYMKLKKAAITTQCAWRGKVA 509 (1027)
Q Consensus 444 ~~r~a~~~iQs~~Rg~~aR~~~~~--------~r~~~aa~~IQ~~~R~~~~r~~~~~~~~a~i~iQ~~~R~~~a 509 (1027)
.++.-++.||+.+||+..|+.|.. .+...++..+|+-+|+|..|....+...+++.+|..+|.+..
T Consensus 831 ~tr~p~v~iqa~~rg~q~r~dy~ki~wSv~~lek~~lrwR~k~~g~Rgfk~~~~~e~~~~a~t~~e~~yd~yKq 904 (975)
T KOG0520|consen 831 STRQPIVKIQAAVRGYQVRKDYRKITWSVGVLEKLILRWRRKGKGFRGFKGRALFEEQETAATVIEDCYDFYKQ 904 (975)
T ss_pred ccCCccccchhhhhchhHhhhhheechhhhHHHHHHHHHHHhhhhhcccccccchhccccccchHHHHHHHHHH
Confidence 999999999999999999999842 233457788999999999999998888889999988887643
No 31
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.66 E-value=0.02 Score=70.70 Aligned_cols=159 Identities=21% Similarity=0.229 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 001692 520 ARETGALQAAKNKLEKQVEELTWRLQLEKRMRVDMEEAKTQENAKLQSALQEMQLQFKESKEKLMKEIEVAKKEAEKVPV 599 (1027)
Q Consensus 520 a~~~~~L~~~k~~LE~kv~el~~rl~~e~~~~~ele~~~~~e~~~L~~~l~~le~~l~~~~~~l~~e~~~~~~~~ee~~~ 599 (1027)
..++..++....+|+.++..|....+.++.....+|. ++.+.+..-..++.+|.+|..+.+++.+....
T Consensus 459 k~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEk-----------rL~eE~~~R~~lEkQL~eErk~r~~ee~~aar 527 (697)
T PF09726_consen 459 KSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEK-----------RLAEERRQRASLEKQLQEERKARKEEEEKAAR 527 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhh
Confidence 3455666777777777777777666644443333333 33333333333333333322222222111100
Q ss_pred -------cc-ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH---
Q 001692 600 -------VQ-EVPVIDHAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKI-------SEERLKQALEAESKIV--- 661 (1027)
Q Consensus 600 -------~~-e~~~~~~~~~~~L~~e~~kLe~~l~~l~~~l~elek~~~ele~~-------~~~~~~~l~~~~~~~~--- 661 (1027)
.. +-...-..+...|+.|+.+|+.++...++.+..++.+..++... .+.+...|..++++-.
T Consensus 528 ~~~~~~~~r~e~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqdk~~~LE 607 (697)
T PF09726_consen 528 ALAQAQATRQECAESCRQRRRQLESELKKLRRELKQKEEQIRELESELQELRKYEKESEKDTEVLMSALSAMQDKNQHLE 607 (697)
T ss_pred ccccchhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 00 00011244556677777777777777777766666666554443 2223333333333222
Q ss_pred ------------------HHHHHHHHHHHHHHhHHHHHHHHHHhcc
Q 001692 662 ------------------QLKTAMHRLEEKVSDMETENQILRQQSL 689 (1027)
Q Consensus 662 ------------------~l~~~~~~Lee~l~~le~e~~~L~qq~~ 689 (1027)
+...++.-++..+.+.+.|+..|+++..
T Consensus 608 ~sLsaEtriKldLfsaLg~akrq~ei~~~~~~~~d~ei~~lk~ki~ 653 (697)
T PF09726_consen 608 NSLSAETRIKLDLFSALGDAKRQLEIAQGQLRKKDKEIEELKAKIA 653 (697)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556677777788888888888544
No 32
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=97.51 E-value=0.38 Score=60.45 Aligned_cols=76 Identities=21% Similarity=0.302 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001692 611 VEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1027)
Q Consensus 611 ~~~L~~e~~kLe~~l~~l~~~l~elek~~~ele~~~~~~~~~l~~~~~~~~~l~~~~~~Lee~l~~le~e~~~L~q 686 (1027)
.+.+..++.+.+..++.|+..++.++..+..|..+..+...++...++.....+..+.++...++.-..+++.|+.
T Consensus 389 ~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~~~~l~~lk~ 464 (1074)
T KOG0250|consen 389 NNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQLRKKIENISEELKDLKK 464 (1074)
T ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3555556666666666666666666666666666666666666555555555556666666666666666665554
No 33
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.45 E-value=0.02 Score=67.87 Aligned_cols=30 Identities=17% Similarity=0.350 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001692 613 ELTSENEKLKTLVSSLEKKIDETEKKFEET 642 (1027)
Q Consensus 613 ~L~~e~~kLe~~l~~l~~~l~elek~~~el 642 (1027)
.++..+..|+.+++.|..++.++..++.+.
T Consensus 434 ~~nak~~ql~~eletLn~k~qqls~kl~Dv 463 (1118)
T KOG1029|consen 434 YLNAKKKQLQQELETLNFKLQQLSGKLQDV 463 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 344444444444444444444444444443
No 34
>PRK11637 AmiB activator; Provisional
Probab=97.42 E-value=0.049 Score=64.37 Aligned_cols=63 Identities=14% Similarity=0.110 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 001692 622 KTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQIL 684 (1027)
Q Consensus 622 e~~l~~l~~~l~elek~~~ele~~~~~~~~~l~~~~~~~~~l~~~~~~Lee~l~~le~e~~~L 684 (1027)
+.+..+++..+.+++.+..+|+..+.+....+..++......+.++..|+.+...++..+..+
T Consensus 190 e~~~~~l~~~~~e~~~~k~~L~~~k~e~~~~l~~L~~~~~~~~~~l~~l~~~~~~L~~~I~~l 252 (428)
T PRK11637 190 EEKQSQQKTLLYEQQAQQQKLEQARNERKKTLTGLESSLQKDQQQLSELRANESRLRDSIARA 252 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333344444443333333333333333334444444444444444444433
No 35
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=97.41 E-value=0.34 Score=65.02 Aligned_cols=24 Identities=25% Similarity=0.462 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHH
Q 001692 658 SKIVQLKTAMHRLEEKVSDMETEN 681 (1027)
Q Consensus 658 ~~~~~l~~~~~~Lee~l~~le~e~ 681 (1027)
.++..++.++..++.++..++.++
T Consensus 469 ~~l~~~~~~l~~l~~~l~~l~~~~ 492 (1164)
T TIGR02169 469 QELYDLKEEYDRVEKELSKLQREL 492 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333344444443333333
No 36
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.34 E-value=0.68 Score=58.39 Aligned_cols=12 Identities=25% Similarity=0.537 Sum_probs=5.9
Q ss_pred HHHHHHHhhcCC
Q 001692 335 TACKRLLEKVGL 346 (1027)
Q Consensus 335 ~~~~~il~~~~~ 346 (1027)
..+..+|...|+
T Consensus 209 ~~V~~lLk~~gI 220 (1293)
T KOG0996|consen 209 KDVTKLLKSHGI 220 (1293)
T ss_pred HHHHHHHHhcCC
Confidence 344555555444
No 37
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=97.30 E-value=0.61 Score=62.58 Aligned_cols=38 Identities=13% Similarity=0.175 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001692 649 RLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1027)
Q Consensus 649 ~~~~l~~~~~~~~~l~~~~~~Lee~l~~le~e~~~L~q 686 (1027)
+..+++..+..+..++.++..++.++..++.++..++.
T Consensus 453 l~~~~~~~~~~~~~~~~~l~~~~~~l~~l~~~l~~l~~ 490 (1164)
T TIGR02169 453 QEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQR 490 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444444444444444444444443
No 38
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.26 E-value=0.1 Score=64.60 Aligned_cols=70 Identities=11% Similarity=0.243 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001692 617 ENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1027)
Q Consensus 617 e~~kLe~~l~~l~~~l~elek~~~ele~~~~~~~~~l~~~~~~~~~l~~~~~~Lee~l~~le~e~~~L~q 686 (1027)
+.+.|-..|..++++...||.-+..-.+-+-++-.-|-++..+++.++..+..-+.+|.+|+..+..+-.
T Consensus 588 ~~e~L~~aL~amqdk~~~LE~sLsaEtriKldLfsaLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~~~a 657 (697)
T PF09726_consen 588 DTEVLMSALSAMQDKNQHLENSLSAETRIKLDLFSALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQLLA 657 (697)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455555566666666666666666666666677777778888888888888888888888888877764
No 39
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.23 E-value=0.057 Score=66.29 Aligned_cols=32 Identities=16% Similarity=0.310 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001692 608 HAVVEELTSENEKLKTLVSSLEKKIDETEKKF 639 (1027)
Q Consensus 608 ~~~~~~L~~e~~kLe~~l~~l~~~l~elek~~ 639 (1027)
+.++..+++++..+++.+++.....+.-+...
T Consensus 786 e~rlkdl~keik~~k~~~e~~~~~~ek~~~e~ 817 (1174)
T KOG0933|consen 786 ERRLKDLEKEIKTAKQRAEESSKELEKRENEY 817 (1174)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666666655555554433333
No 40
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=97.22 E-value=0.072 Score=52.60 Aligned_cols=48 Identities=27% Similarity=0.324 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001692 526 LQAAKNKLEKQVEELTWRLQLEKRMRVDMEEAKTQENAKLQSALQEMQLQFKESKEKLM 584 (1027)
Q Consensus 526 L~~~k~~LE~kv~el~~rl~~e~~~~~ele~~~~~e~~~L~~~l~~le~~l~~~~~~l~ 584 (1027)
.......++.++.++..+.. .+..++..|+..+..++.+++.++..+.
T Consensus 12 a~~r~e~~e~~~K~le~~~~-----------~~E~EI~sL~~K~~~lE~eld~~~~~l~ 59 (143)
T PF12718_consen 12 AQDRAEELEAKVKQLEQENE-----------QKEQEITSLQKKNQQLEEELDKLEEQLK 59 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444556666666666555 6667788888888888888888777653
No 41
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.10 E-value=0.7 Score=57.27 Aligned_cols=14 Identities=29% Similarity=0.233 Sum_probs=8.7
Q ss_pred hhhchHHHHhHHHH
Q 001692 90 INLTNEKLQQHFNQ 103 (1027)
Q Consensus 90 iNyanEkLq~~f~~ 103 (1027)
.+-.|-++|++|..
T Consensus 120 h~a~~~~vq~lF~S 133 (1174)
T KOG0933|consen 120 HLAQNSKVQDLFCS 133 (1174)
T ss_pred eeCchhHHHHHHHH
Confidence 34566777777743
No 42
>PRK11637 AmiB activator; Provisional
Probab=97.08 E-value=0.23 Score=58.65 Aligned_cols=70 Identities=14% Similarity=0.246 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 001692 615 TSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQIL 684 (1027)
Q Consensus 615 ~~e~~kLe~~l~~l~~~l~elek~~~ele~~~~~~~~~l~~~~~~~~~l~~~~~~Lee~l~~le~e~~~L 684 (1027)
.....+|.....+++....+++....+++.++.++.....+.+..+..|+.+....+..+..|+.+...|
T Consensus 176 ~~~~~~L~~~k~~le~~~~~l~~~~~e~~~~k~~L~~~k~e~~~~l~~L~~~~~~~~~~l~~l~~~~~~L 245 (428)
T PRK11637 176 KQTREELAAQKAELEEKQSQQKTLLYEQQAQQQKLEQARNERKKTLTGLESSLQKDQQQLSELRANESRL 245 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333333333333334444444444444444444443333
No 43
>PRK04863 mukB cell division protein MukB; Provisional
Probab=97.06 E-value=0.41 Score=64.22 Aligned_cols=80 Identities=14% Similarity=0.155 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 001692 608 HAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKIS----------EERLKQALEAESKIVQLKTAMHRLEEKVSDM 677 (1027)
Q Consensus 608 ~~~~~~L~~e~~kLe~~l~~l~~~l~elek~~~ele~~~----------~~~~~~l~~~~~~~~~l~~~~~~Lee~l~~l 677 (1027)
++++..+..+...++..++.++.++...+..+..+++.+ +++...+.....++.+.+.++.+++.++..+
T Consensus 389 EeeLeeLqeqLaelqqel~elQ~el~q~qq~i~~Le~~~~~~~~~~~SdEeLe~~LenF~aklee~e~qL~elE~kL~~l 468 (1486)
T PRK04863 389 EEEVDELKSQLADYQQALDVQQTRAIQYQQAVQALERAKQLCGLPDLTADNAEDWLEEFQAKEQEATEELLSLEQKLSVA 468 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555555555444444332 2344444555666666666666666666666
Q ss_pred HHHHHHHHHh
Q 001692 678 ETENQILRQQ 687 (1027)
Q Consensus 678 e~e~~~L~qq 687 (1027)
+.+++.++++
T Consensus 469 ea~leql~~~ 478 (1486)
T PRK04863 469 QAAHSQFEQA 478 (1486)
T ss_pred HHHHHHHHHH
Confidence 6666665553
No 44
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=97.06 E-value=0.74 Score=61.83 Aligned_cols=35 Identities=23% Similarity=0.381 Sum_probs=19.9
Q ss_pred cCCccccccccCcHHHHHHhhcCCcchhhhhHhhh
Q 001692 116 EAINWSYIEFVDNQDILDLIEKKPGGIIALLDEAC 150 (1027)
Q Consensus 116 E~i~~~~i~~~dn~~~ldli~~~~~Gil~lLdee~ 150 (1027)
-||......|..-..+-.++..+|...+.+||+..
T Consensus 131 ~~i~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~ 165 (1179)
T TIGR02168 131 TGLGKRSYSIIEQGKISEIIEAKPEERRAIFEEAA 165 (1179)
T ss_pred cCCCcccchheecccHHHHHcCCHHHHHHHHHHHc
Confidence 45544333444334455566666777777777654
No 45
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.04 E-value=0.61 Score=55.92 Aligned_cols=17 Identities=0% Similarity=0.190 Sum_probs=8.3
Q ss_pred HHHHHHHHhHHHHHHHH
Q 001692 668 HRLEEKVSDMETENQIL 684 (1027)
Q Consensus 668 ~~Lee~l~~le~e~~~L 684 (1027)
.-+..++++|+++...+
T Consensus 566 di~n~qlkelk~~~~~q 582 (1118)
T KOG1029|consen 566 DIFNNQLKELKEDVNSQ 582 (1118)
T ss_pred hhHHHHHHHHHHHHHHH
Confidence 33445555555555433
No 46
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=97.04 E-value=1.7 Score=54.96 Aligned_cols=43 Identities=19% Similarity=0.249 Sum_probs=24.8
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHhhhHHHhHhhhhcCCCC
Q 001692 956 NTLLSTLKQNFVPPVLVQKIFTQTFSYINVQLFNSLLLRRECC 998 (1027)
Q Consensus 956 ~~~~~~l~~~~v~~~l~~Q~f~Qlf~~in~~lfN~Ll~r~~~c 998 (1027)
+.++.++....=.-....|=|.-+..+-...-|+.++..|.||
T Consensus 915 ~e~L~~l~~~l~~R~~~~qk~r~~~~~~~~~~F~~~l~~R~~s 957 (1074)
T KOG0250|consen 915 DELLKALGEALESREQKYQKFRKLLTRRATEEFDALLGKRGFS 957 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccC
Confidence 3333333333223333445555566677777788888888776
No 47
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=97.03 E-value=0.37 Score=58.67 Aligned_cols=29 Identities=14% Similarity=0.121 Sum_probs=20.5
Q ss_pred ccccHHHHHHHHHHHHHHHHhCCCCHHHH
Q 001692 944 ASSHWQSIIDSLNTLLSTLKQNFVPPVLV 972 (1027)
Q Consensus 944 ~~~~~~~il~~L~~~~~~l~~~~v~~~l~ 972 (1027)
|..+++..+..+|+++.++....++++..
T Consensus 897 p~~~lr~sleq~nstl~ll~~~~~~~Ey~ 925 (1243)
T KOG0971|consen 897 PYECLRQSLEQLNSTLNLLATAMQEGEYD 925 (1243)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 34567888888888888887776655443
No 48
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.99 E-value=1.1 Score=56.78 Aligned_cols=6 Identities=33% Similarity=0.622 Sum_probs=2.7
Q ss_pred HHHHHH
Q 001692 252 LQQLLE 257 (1027)
Q Consensus 252 l~~L~~ 257 (1027)
|..|+.
T Consensus 144 lS~LIh 149 (1293)
T KOG0996|consen 144 LSALIH 149 (1293)
T ss_pred HHHHHh
Confidence 444444
No 49
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=96.97 E-value=0.1 Score=61.54 Aligned_cols=18 Identities=28% Similarity=0.405 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 001692 528 AAKNKLEKQVEELTWRLQ 545 (1027)
Q Consensus 528 ~~k~~LE~kv~el~~rl~ 545 (1027)
.....|+.++.+++..|.
T Consensus 164 ~e~~~l~~~v~~l~~eL~ 181 (546)
T PF07888_consen 164 EEVEQLREEVERLEAELE 181 (546)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333334444444433333
No 50
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=96.96 E-value=0.25 Score=52.55 Aligned_cols=53 Identities=21% Similarity=0.217 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001692 608 HAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKI 660 (1027)
Q Consensus 608 ~~~~~~L~~e~~kLe~~l~~l~~~l~elek~~~ele~~~~~~~~~l~~~~~~~ 660 (1027)
..+.+.|+.++..++....+++..+.++...+.+++++...+..++...+..+
T Consensus 88 ~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~ 140 (239)
T COG1579 88 ERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNL 140 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666666666666666655555555555555555544444443
No 51
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=96.93 E-value=0.26 Score=56.31 Aligned_cols=56 Identities=14% Similarity=0.202 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 001692 627 SLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQ 682 (1027)
Q Consensus 627 ~l~~~l~elek~~~ele~~~~~~~~~l~~~~~~~~~l~~~~~~Lee~l~~le~e~~ 682 (1027)
+..++...+...+.|-++-..++..++..-+.++++|..+-..|+..|.+++.+..
T Consensus 193 eq~~q~~kl~~~~~E~kk~~~~l~~~l~~~q~~l~eL~~~~~~L~~~Ias~e~~aA 248 (420)
T COG4942 193 EQRAQQAKLAQLLEERKKTLAQLNSELSADQKKLEELRANESRLKNEIASAEAAAA 248 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 33333334444444444445555555566666777777777777777777775553
No 52
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=96.92 E-value=2.1 Score=57.20 Aligned_cols=41 Identities=27% Similarity=0.374 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 001692 644 KISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQIL 684 (1027)
Q Consensus 644 ~~~~~~~~~l~~~~~~~~~l~~~~~~Lee~l~~le~e~~~L 684 (1027)
..++++...+.+++..+..++....+++.+++.++..+..+
T Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l 493 (1163)
T COG1196 453 EQLEELRDRLKELERELAELQEELQRLEKELSSLEARLDRL 493 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333344444444444444444444444333
No 53
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=96.91 E-value=2 Score=57.75 Aligned_cols=20 Identities=30% Similarity=0.165 Sum_probs=11.7
Q ss_pred CCCCchhhHHhhchhHHHHH
Q 001692 997 CCTFSNGEYVKAGLAELELW 1016 (1027)
Q Consensus 997 ~cs~s~g~qIr~nls~Le~W 1016 (1027)
+-+.|.|++-+..|+.+-.|
T Consensus 1087 ~~~lS~g~~~~~~l~~~~~~ 1106 (1179)
T TIGR02168 1087 LSLLSGGEKALTALALLFAI 1106 (1179)
T ss_pred ccccCccHHHHHHHHHHHHH
Confidence 33456677666666665443
No 54
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K. The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....
Probab=96.84 E-value=0.0013 Score=42.20 Aligned_cols=20 Identities=45% Similarity=0.605 Sum_probs=13.8
Q ss_pred hhhhHHHHHHHHHHHHHHHH
Q 001692 424 ASCLRIQRDLRMYLAKKAYK 443 (1027)
Q Consensus 424 ~Aai~IQ~~~R~~~~rk~y~ 443 (1027)
.||++||++||||.+|+.|.
T Consensus 2 ~aai~iQ~~~R~~~~Rk~~k 21 (21)
T PF00612_consen 2 KAAIIIQSYWRGYLARKRYK 21 (21)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcC
Confidence 36777777777777777663
No 55
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=96.84 E-value=0.044 Score=59.20 Aligned_cols=67 Identities=25% Similarity=0.327 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001692 608 HAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKV 674 (1027)
Q Consensus 608 ~~~~~~L~~e~~kLe~~l~~l~~~l~elek~~~ele~~~~~~~~~l~~~~~~~~~l~~~~~~Lee~l 674 (1027)
.+++..|..++...+...++...+..+...++.-++..++....++..++.++..|+.++..+.+.+
T Consensus 91 eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~l 157 (237)
T PF00261_consen 91 EERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNL 157 (237)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444444444444444444443333444433333333333333
No 56
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=96.83 E-value=0.38 Score=51.98 Aligned_cols=77 Identities=18% Similarity=0.247 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001692 610 VVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1027)
Q Consensus 610 ~~~~L~~e~~kLe~~l~~l~~~l~elek~~~ele~~~~~~~~~l~~~~~~~~~l~~~~~~Lee~l~~le~e~~~L~q 686 (1027)
++..|..++..+...+..++............++.....+..+++.++......+..+..|+..+..|+.++...+.
T Consensus 142 ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~ 218 (237)
T PF00261_consen 142 KIKELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKE 218 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333444445555555555555555555555555555555555555554443
No 57
>KOG4229 consensus Myosin VII, myosin IXB and related myosins [Cell motility]
Probab=96.83 E-value=0.00076 Score=85.05 Aligned_cols=266 Identities=17% Similarity=0.115 Sum_probs=168.5
Q ss_pred hhHHHHHHHHHHHHHhccCCCeeeEecCCCCCCCCCccccc-chhhhhhccchhhHHHHHhhCCCCccChHHHHHHHhhh
Q 001692 244 IGSRFKQQLQQLLETLSSSEPHYIRCVKPNNLLKPAIFENK-NVLQQLRCGGVMEAIRISCAGYPTRKPFDEFVDRFGIL 322 (1027)
Q Consensus 244 v~~~f~~~l~~L~~~l~~t~~hfIrCikpN~~~~~~~fd~~-~V~~QLr~~gvle~iri~~~Gyp~r~~~~~F~~ry~~l 322 (1027)
++..+.-++.+..+.|.+..+||.|||++|..-.+..++.. .+..++..-|...+....+.|+..+..|.+++.+++..
T Consensus 644 ~~~~~~~~~~~~~s~l~rg~~~~~~~i~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 723 (1062)
T KOG4229|consen 644 VLPEDRPSLFEELSALARGQDHFMRAISQNPRYALEQGSQERKGPRRLSSRGSTATPSHDRPGRKTNLLYSEVVNGRKNS 723 (1062)
T ss_pred ccccCChhhhcchhhcCCCccchhhhhhcCchhhhhhcCcccCchhhhhhcccccCCCCCCccccccccchhhhcccccc
Confidence 34455567777888888899999999999999999999988 89999999999999999999999999999988766633
Q ss_pred hcccCCCCccHHHHHHHHHhhcCCCCceeccceeeecccccccccchhhhcchhhHHHHHHHhhhcccchhh--------
Q 001692 323 ASKVLDGSSDEVTACKRLLEKVGLEGYQIGKTKVFLRAGQMADLDARRTEVLGRSASIIQRKVRSYLSRKNY-------- 394 (1027)
Q Consensus 323 ~~~~~~~~~~~~~~~~~il~~~~~~~~~iG~TkVFlr~~~~~~Le~~r~~~l~~aa~~IQ~~~R~~l~R~~y-------- 394 (1027)
.-.......-.+.+|..++..-+.+.+..+.+.++.+..-...+.-.+.+...+ .+..|...+.|..+.++
T Consensus 724 ~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~~t~-~~l~~~~kk~~~~~~~~~~~~~~k~ 802 (1062)
T KOG4229|consen 724 EYLCSPRPDLAERARVQLLEKNAINMKSERLTTLLPRYIPDPCLDPVRRERVTQ-LRLHQHKKKAFPQPLRSPQVRKSKL 802 (1062)
T ss_pred cccCCCCHHHHHHHHHHHHhhccccchhhhhcccccccCccccCCccccchhhh-HHHHHhhccccCccccccchhhccc
Confidence 221111111235566778887787888888888888764443333322222111 12223333233322221
Q ss_pred -------------------hhh----chhhHHHHHHHHhhhhhhhhhh--------------------------------
Q 001692 395 -------------------IML----RRSAIHIQAACRGQLARTVYES-------------------------------- 419 (1027)
Q Consensus 395 -------------------~~~----r~a~i~iQ~~~Rg~laR~~~~~-------------------------------- 419 (1027)
... -.+++.+|..|=|...+.....
T Consensus 803 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~t~~~~~~~v~~~~~~~~i~~~~~~~~~~i~~~~~~~~v~~~~~ 882 (1062)
T KOG4229|consen 803 ESYLAIAKELFVRRFLENQKKIGLRFPDNVVLRQVSYTGELDQEQVRRSLYFAEISPQDSVNQSRIGLPETVDTVADEEF 882 (1062)
T ss_pred hhhhhhhhHHHHHHHHHhhhhhccCCChHHHHHhhhchhhhccchheeccccccccchhccccccccCCccchhhchhhe
Confidence 111 1234445554444332221110
Q ss_pred ------------------------------ccchhh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001692 420 ------------------------------MRREAS---CLRIQRDLRMYLAKKAYKDMCFSAVCIQTGMRGMAARNELR 466 (1027)
Q Consensus 420 ------------------------------~r~~~A---ai~IQ~~~R~~~~rk~y~~~r~a~~~iQs~~Rg~~aR~~~~ 466 (1027)
...+.. +...|+|++....++.+.++..+.+.+| +++...|+...
T Consensus 883 ~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~~~~~ 960 (1062)
T KOG4229|consen 883 STLSCNADTIRLGVHVVFLLLNERSRTEVALKDEANDELSFFKQKWFRLTLERKGLLRLSEGSVLIQ--RLELLGRRTCP 960 (1062)
T ss_pred eecccCccchhccceEEeecccchHHHHHHHhHhhHHHHHHHHHHHHHhhhccccchhhcchhHHHH--HHHHhcccCCc
Confidence 000001 3345677777777777777777777777 66666555332
Q ss_pred -HHHhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHhhhHHHHHHHHH
Q 001692 467 -FRRQTRASILIQSHCRKYLARLHYMKLKKAAITTQCAWRGKVARRE 512 (1027)
Q Consensus 467 -~~r~~~aa~~IQ~~~R~~~~r~~~~~~~~a~i~iQ~~~R~~~arke 512 (1027)
......++.-+|..|+.+..+..+...++..+.+|..++...-+..
T Consensus 961 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 1007 (1062)
T KOG4229|consen 961 VAGAPAVAAASLQNAWPVYRELSGRLGLRRSFIADQSPRSRPAYTMI 1007 (1062)
T ss_pred chhhhhhhhhhccccchhhhhhhhhHHHhhhhcchhcccccchhhhh
Confidence 2234457777888888888888888888888888877776654443
No 58
>PRK09039 hypothetical protein; Validated
Probab=96.81 E-value=0.17 Score=57.60 Aligned_cols=138 Identities=12% Similarity=0.136 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 001692 522 ETGALQAAKNKLEKQVEELTWRLQLEKRMRVDMEEAKTQENAKLQSALQEMQLQFKESKEKLMKEIEVAKKEAEKVPVVQ 601 (1027)
Q Consensus 522 ~~~~L~~~k~~LE~kv~el~~rl~~e~~~~~ele~~~~~e~~~L~~~l~~le~~l~~~~~~l~~e~~~~~~~~ee~~~~~ 601 (1027)
++..+.++..+|+.++.+|..-+..+..... .++.++.+++.++..++... ..++...+.. .
T Consensus 47 ~i~~~~~eL~~L~~qIa~L~e~L~le~~~~~-----------~l~~~l~~l~~~l~~a~~~r----~~Le~~~~~~---~ 108 (343)
T PRK09039 47 EISGKDSALDRLNSQIAELADLLSLERQGNQ-----------DLQDSVANLRASLSAAEAER----SRLQALLAEL---A 108 (343)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------hHHHHHHHHHHHHHHHHHHH----HHHHHHHhhh---h
Confidence 4455566667777778777777765554443 33333333333333332221 1111111100 0
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 001692 602 EVPVIDHAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDM 677 (1027)
Q Consensus 602 e~~~~~~~~~~~L~~e~~kLe~~l~~l~~~l~elek~~~ele~~~~~~~~~l~~~~~~~~~l~~~~~~Lee~l~~l 677 (1027)
+.....+.+...+..++..++....+....+..+..+++.|++....++..|..++.+..+.+..+.+|+..|...
T Consensus 109 ~~~~~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a 184 (343)
T PRK09039 109 GAGAAAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVA 184 (343)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0011123444445555555555555555555555555555555555555555555444444444444444444444
No 59
>KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms]
Probab=96.80 E-value=0.021 Score=72.47 Aligned_cols=118 Identities=24% Similarity=0.267 Sum_probs=72.1
Q ss_pred hHHHHHHHHhhhhhhhhhhccchh---hhhHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH--HHHHHHHH
Q 001692 401 AIHIQAACRGQLARTVYESMRREA---SCLRIQRDLRMYLAKKAYKDM-------CFSAVCIQTGMRGMA--ARNELRFR 468 (1027)
Q Consensus 401 ~i~iQ~~~Rg~laR~~~~~~r~~~---Aai~IQ~~~R~~~~rk~y~~~-------r~a~~~iQs~~Rg~~--aR~~~~~~ 468 (1027)
.+..|+.+||+..+......--.. -..++|+..||+..|..+... -+.+..+|+.|||+. +-+.....
T Consensus 510 ~is~q~~v~~i~~~~~l~~~~~s~~~s~~~~~qa~~rg~~~r~~~~~~~~fl~~~~P~~~diq~~vr~~~~~~~~~~~~~ 589 (1401)
T KOG2128|consen 510 LISLQALVRGIVLRSALFSLYPSLGKSEKLRIQASERGFSTRNKFRSRLDFLKKQTPFVVDIQALVRGILQYIPRDVYLD 589 (1401)
T ss_pred HhhHHHHhhhhHHHhhHHHHhhhhccccchhhhhhccccchHHHHHhhhhHHHhcCchHHHHHHHHHHHhhhchHHHHHH
Confidence 344666666665554432222111 123457777777666655432 245677788888877 33333334
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHhh-------hhHHHHHhhhHHHHHHHHHHHHHHH
Q 001692 469 RQTRASILIQSHCRKYLARLHYMKL-------KKAAITTQCAWRGKVARRELRKLKM 518 (1027)
Q Consensus 469 r~~~aa~~IQ~~~R~~~~r~~~~~~-------~~a~i~iQ~~~R~~~arkel~~l~~ 518 (1027)
-....++.+|++.||+..|..|.+. ..+++.+|+.+|....|..++.|..
T Consensus 590 ~~~~evv~~qs~~R~~lsrk~~~~~~q~~~~~~~~~i~iqs~~r~f~~r~~y~~L~~ 646 (1401)
T KOG2128|consen 590 SAKKEVVKFQSLTRGALSRKKYSRKLQYFKDNMTKIIKIQSKIRKFPNRKDYKLLFT 646 (1401)
T ss_pred HhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhHHHHHHHHHhcccchHHHHHhc
Confidence 4456777888888888887776554 3577788888888888887777654
No 60
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=96.77 E-value=3.9 Score=54.76 Aligned_cols=17 Identities=6% Similarity=0.198 Sum_probs=7.6
Q ss_pred CCCCh-HHHHHHHHHHhc
Q 001692 153 PRSTH-ETFAQKLYQTFK 169 (1027)
Q Consensus 153 ~~~td-~~~~~kl~~~~~ 169 (1027)
|+|+. +++++.+.=.+|
T Consensus 32 PNGSGKSNI~DAi~fVLG 49 (1163)
T COG1196 32 PNGSGKSNIVDAIRFVLG 49 (1163)
T ss_pred CCCCchHHHHHHHHHHhC
Confidence 44443 334555544444
No 61
>KOG0164 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=96.76 E-value=0.015 Score=68.49 Aligned_cols=62 Identities=23% Similarity=0.174 Sum_probs=50.6
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhh
Q 001692 422 REASCLRIQRDLRMYLAKKAYKDMCFSAVCIQTGMRGMAARNELRFRRQTRASILIQSHCRKYLARLHYMKL 493 (1027)
Q Consensus 422 ~~~Aai~IQ~~~R~~~~rk~y~~~r~a~~~iQs~~Rg~~aR~~~~~~r~~~aa~~IQ~~~R~~~~r~~~~~~ 493 (1027)
...-++.||+.||||.+|.+|++++.+++.|+ +||.++.+ ..+..||+.+|++..++.|.+-
T Consensus 695 l~~lvtllQK~~RG~~~R~ry~rmka~~~ii~-wyR~~K~k---------s~v~el~~~~rg~k~~r~ygk~ 756 (1001)
T KOG0164|consen 695 LPSLVTLLQKAWRGWLARQRYRRMKASATIIR-WYRRYKLK---------SYVQELQRRFRGAKQMRDYGKS 756 (1001)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH---------HHHHHHHHHHHhhhhccccCCC
Confidence 34578899999999999999999999999998 77754322 3566789999999999988663
No 62
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=96.75 E-value=0.94 Score=47.37 Aligned_cols=23 Identities=22% Similarity=0.446 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHh
Q 001692 665 TAMHRLEEKVSDMETENQILRQQ 687 (1027)
Q Consensus 665 ~~~~~Lee~l~~le~e~~~L~qq 687 (1027)
+++++|+++-..|+.|+..-.+|
T Consensus 164 esvqRLkdEardlrqelavr~kq 186 (333)
T KOG1853|consen 164 ESVQRLKDEARDLRQELAVRTKQ 186 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 34555666666666666554444
No 63
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=96.67 E-value=0.35 Score=47.79 Aligned_cols=31 Identities=29% Similarity=0.402 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001692 613 ELTSENEKLKTLVSSLEKKIDETEKKFEETS 643 (1027)
Q Consensus 613 ~L~~e~~kLe~~l~~l~~~l~elek~~~ele 643 (1027)
.|+..+.-|+.+++....++.+...++.++.
T Consensus 77 ~l~rriq~LEeele~ae~~L~e~~ekl~e~d 107 (143)
T PF12718_consen 77 QLNRRIQLLEEELEEAEKKLKETTEKLREAD 107 (143)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444333333
No 64
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=96.66 E-value=0.19 Score=59.44 Aligned_cols=25 Identities=28% Similarity=0.447 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001692 521 RETGALQAAKNKLEKQVEELTWRLQ 545 (1027)
Q Consensus 521 ~~~~~L~~~k~~LE~kv~el~~rl~ 545 (1027)
++...|.+.+..|+.++..++.++.
T Consensus 150 kE~eeL~~~~~~Le~e~~~l~~~v~ 174 (546)
T PF07888_consen 150 KEKEELLKENEQLEEEVEQLREEVE 174 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666777777776666655
No 65
>PRK02224 chromosome segregation protein; Provisional
Probab=96.59 E-value=4.2 Score=52.93 Aligned_cols=8 Identities=25% Similarity=0.891 Sum_probs=4.8
Q ss_pred eeeccccc
Q 001692 356 VFLRAGQM 363 (1027)
Q Consensus 356 VFlr~~~~ 363 (1027)
||+.-|.+
T Consensus 133 ~~i~Qge~ 140 (880)
T PRK02224 133 AYVRQGEV 140 (880)
T ss_pred eEeeccCh
Confidence 66666655
No 66
>PRK02224 chromosome segregation protein; Provisional
Probab=96.55 E-value=1.7 Score=56.47 Aligned_cols=15 Identities=27% Similarity=0.481 Sum_probs=6.1
Q ss_pred HHHHHhHHHHHHHHH
Q 001692 671 EEKVSDMETENQILR 685 (1027)
Q Consensus 671 ee~l~~le~e~~~L~ 685 (1027)
++.+..++.++..++
T Consensus 411 e~~l~~l~~~~~~l~ 425 (880)
T PRK02224 411 EDFLEELREERDELR 425 (880)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333344444444443
No 67
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K. The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....
Probab=96.53 E-value=0.0035 Score=40.23 Aligned_cols=20 Identities=55% Similarity=0.768 Sum_probs=14.4
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 001692 472 RASILIQSHCRKYLARLHYM 491 (1027)
Q Consensus 472 ~aa~~IQ~~~R~~~~r~~~~ 491 (1027)
+||+.||++||||++|+.|+
T Consensus 2 ~aai~iQ~~~R~~~~Rk~~k 21 (21)
T PF00612_consen 2 KAAIIIQSYWRGYLARKRYK 21 (21)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcC
Confidence 46777777777777777663
No 68
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=96.51 E-value=1.5 Score=53.61 Aligned_cols=32 Identities=19% Similarity=0.228 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001692 608 HAVVEELTSENEKLKTLVSSLEKKIDETEKKF 639 (1027)
Q Consensus 608 ~~~~~~L~~e~~kLe~~l~~l~~~l~elek~~ 639 (1027)
...++..-.++..|+.++.+++...-.+-...
T Consensus 152 k~t~SRAlsQN~eLK~QL~Elq~~Fv~ltne~ 183 (617)
T PF15070_consen 152 KATASRALSQNRELKEQLAELQDAFVKLTNEN 183 (617)
T ss_pred chHHHHHHHhHHHHHHHHHHHHHHHHHHHHhh
Confidence 34455555666666666666665544444333
No 69
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=96.48 E-value=0.65 Score=52.71 Aligned_cols=81 Identities=20% Similarity=0.241 Sum_probs=53.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhHHHHHH
Q 001692 607 DHAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHR----LEEKVSDMETENQ 682 (1027)
Q Consensus 607 ~~~~~~~L~~e~~kLe~~l~~l~~~l~elek~~~ele~~~~~~~~~l~~~~~~~~~l~~~~~~----Lee~l~~le~e~~ 682 (1027)
+.+++..+..++..++.++++.+..+.+++.++.+++...++...+..+++..+.+++..... -..++..|+.+.+
T Consensus 207 D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~~r~~t~~Ev~~Lk~~~~ 286 (325)
T PF08317_consen 207 DQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIREECRGWTRSEVKRLKAKVD 286 (325)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 456667777777777777777777777777766666666666666666666666655544432 3356777888888
Q ss_pred HHHHh
Q 001692 683 ILRQQ 687 (1027)
Q Consensus 683 ~L~qq 687 (1027)
.|+..
T Consensus 287 ~Le~~ 291 (325)
T PF08317_consen 287 ALEKL 291 (325)
T ss_pred HHHHH
Confidence 88764
No 70
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=96.48 E-value=5.9 Score=53.20 Aligned_cols=31 Identities=16% Similarity=0.174 Sum_probs=14.6
Q ss_pred HHHHhhhcccchhhhhhchhhHHHHHHHHhh
Q 001692 381 IQRKVRSYLSRKNYIMLRRSAIHIQAACRGQ 411 (1027)
Q Consensus 381 IQ~~~R~~l~R~~y~~~r~a~i~iQ~~~Rg~ 411 (1027)
|..|+|-.-.-..+..++..+..++..++..
T Consensus 228 i~~W~~~~~~~~~~~~~r~~~~~l~~~~~~l 258 (1201)
T PF12128_consen 228 IDDWLRDIRASQGFEKVRPEFDKLQQQYRQL 258 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444443333334444555555555555544
No 71
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=96.45 E-value=0.85 Score=46.31 Aligned_cols=81 Identities=22% Similarity=0.243 Sum_probs=60.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001692 607 DHAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1027)
Q Consensus 607 ~~~~~~~L~~e~~kLe~~l~~l~~~l~elek~~~ele~~~~~~~~~l~~~~~~~~~l~~~~~~Lee~l~~le~e~~~L~q 686 (1027)
.+.++..|..+...+.+.+..+....+.........+.....+..+|++++..-...+..++.|+..+..|+..+...+.
T Consensus 107 ~Es~~~eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~e~~ik~ltdKLkEaE~rAE~aERsVakLeke~DdlE~kl~~~k~ 186 (205)
T KOG1003|consen 107 AESQSEELEEDLRILDSNLKSLSAKEEKLEQKEEKYEEELKELTDKLKEAETRAEFAERRVAKLEKERDDLEEKLEEAKE 186 (205)
T ss_pred HHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHcccHHHHHHhhHHHHH
Confidence 46677778888888888888888888877777888888888888888777777777777777777777777766655544
Q ss_pred h
Q 001692 687 Q 687 (1027)
Q Consensus 687 q 687 (1027)
+
T Consensus 187 k 187 (205)
T KOG1003|consen 187 K 187 (205)
T ss_pred H
Confidence 3
No 72
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=96.40 E-value=2.2 Score=51.31 Aligned_cols=55 Identities=18% Similarity=0.265 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhh
Q 001692 432 DLRMYLAKKAYKDMCFSAVCIQTGMRGMAARNELRFRRQTRASILIQSHCRKYLARLHYMKLK 494 (1027)
Q Consensus 432 ~~R~~~~rk~y~~~r~a~~~iQs~~Rg~~aR~~~~~~r~~~aa~~IQ~~~R~~~~r~~~~~~~ 494 (1027)
.+..|+.+.+|.+...++..+=.. +.+. .-+..+.+++|++.|||++|+++....
T Consensus 782 kVn~WLv~sRWkk~q~~a~sVIKL------kNkI--~yRae~v~k~Q~~~Rg~L~rkr~~~ri 836 (1259)
T KOG0163|consen 782 KVNKWLVRSRWKKSQYGALSVIKL------KNKI--IYRAECVLKAQRIARGYLARKRHRPRI 836 (1259)
T ss_pred HHHHHHHHhHHHHhhhhhhheeeh------hhHH--HHHHHHHHHHHHHHHHHHHHhhhchHH
Confidence 356677777777665543322111 1111 112347788899999999988876543
No 73
>KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms]
Probab=96.30 E-value=0.068 Score=68.12 Aligned_cols=162 Identities=23% Similarity=0.229 Sum_probs=102.1
Q ss_pred HHHHhhhcccchhhhh----h-chhhHHHHHHHHhhhhhhhhhhc----c-chhhhhHHHHHHHHHHH----HHHHHHHH
Q 001692 381 IQRKVRSYLSRKNYIM----L-RRSAIHIQAACRGQLARTVYESM----R-REASCLRIQRDLRMYLA----KKAYKDMC 446 (1027)
Q Consensus 381 IQ~~~R~~l~R~~y~~----~-r~a~i~iQ~~~Rg~laR~~~~~~----r-~~~Aai~IQ~~~R~~~~----rk~y~~~r 446 (1027)
.|+.+|+...|..--. . ..-...+|+..||+..|..+... + ..-....||+.|||+.. ...+....
T Consensus 513 ~q~~v~~i~~~~~l~~~~~s~~~s~~~~~qa~~rg~~~r~~~~~~~~fl~~~~P~~~diq~~vr~~~~~~~~~~~~~~~~ 592 (1401)
T KOG2128|consen 513 LQALVRGIVLRSALFSLYPSLGKSEKLRIQASERGFSTRNKFRSRLDFLKKQTPFVVDIQALVRGILQYIPRDVYLDSAK 592 (1401)
T ss_pred HHHHhhhhHHHhhHHHHhhhhccccchhhhhhccccchHHHHHhhhhHHHhcCchHHHHHHHHHHHhhhchHHHHHHHhh
Confidence 6777777766653211 1 22234459999999988766532 2 34467889999999984 22334456
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----hhhHHHHHHHHHHHHHHHHHHHhhhhHH----HHHhhh-----HHH--HHHH
Q 001692 447 FSAVCIQTGMRGMAARNELRFRR-----QTRASILIQSHCRKYLARLHYMKLKKAA----ITTQCA-----WRG--KVAR 510 (1027)
Q Consensus 447 ~a~~~iQs~~Rg~~aR~~~~~~r-----~~~aa~~IQ~~~R~~~~r~~~~~~~~a~----i~iQ~~-----~R~--~~ar 510 (1027)
.-++.+|+..||..+|+.+..+. ...+++.||++.|+...|..|..+..+- ..+-+. .+. +...
T Consensus 593 ~evv~~qs~~R~~lsrk~~~~~~q~~~~~~~~~i~iqs~~r~f~~r~~y~~L~~s~npsl~~vrkFV~lld~~~~df~~e 672 (1401)
T KOG2128|consen 593 KEVVKFQSLTRGALSRKKYSRKLQYFKDNMTKIIKIQSKIRKFPNRKDYKLLFTSENPSLETVRKFVHLLDQTDVDFEEE 672 (1401)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhHHHHHHHHHhcccchHHHHHhcCCCCchhhHHhhhhhcCCccchHHHH
Confidence 67889999999999998875443 3468899999999999999998875211 111000 000 0111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001692 511 RELRKLKMAARETGALQAAKNKLEKQVEELTWRLQ 545 (1027)
Q Consensus 511 kel~~l~~~a~~~~~L~~~k~~LE~kv~el~~rl~ 545 (1027)
.+ +..-..++...-..+.+||+.+.++..++.
T Consensus 673 ~~---le~lr~eIsrk~~sne~Lekdi~~md~kIg 704 (1401)
T KOG2128|consen 673 LE---LEKLREEISRKIRSNEQLEKDINEMDEKIG 704 (1401)
T ss_pred HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 12 222233555555666677777777666655
No 74
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=96.24 E-value=1.3 Score=55.08 Aligned_cols=48 Identities=21% Similarity=0.200 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Q 001692 525 ALQAAKNKLEKQVEELTWRLQLEKRMRVDMEE---AKTQENAKLQSALQEM 572 (1027)
Q Consensus 525 ~L~~~k~~LE~kv~el~~rl~~e~~~~~ele~---~~~~e~~~L~~~l~~l 572 (1027)
.+......|+.+++.|+.++.......++++. ....|.++|+.++.-.
T Consensus 405 eleke~KnLs~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~t~ 455 (1195)
T KOG4643|consen 405 ELEKEHKNLSKKHEILEERINQLLQQLAELEDLEKKLQFELEKLLEETSTV 455 (1195)
T ss_pred HHHHHhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455666677776666655544444433 2223444444444333
No 75
>PRK03918 chromosome segregation protein; Provisional
Probab=96.20 E-value=0.45 Score=61.88 Aligned_cols=34 Identities=18% Similarity=0.372 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 001692 651 KQALEAESKIVQLKTAMHRLEEKVSDMETENQIL 684 (1027)
Q Consensus 651 ~~l~~~~~~~~~l~~~~~~Lee~l~~le~e~~~L 684 (1027)
.+++.++.++..++..+..++.++..++.++..+
T Consensus 666 ~~~~~l~~~l~~l~~~~~~l~~~i~~l~~~i~~~ 699 (880)
T PRK03918 666 EEYLELSRELAGLRAELEELEKRREEIKKTLEKL 699 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444444444333
No 76
>PRK04863 mukB cell division protein MukB; Provisional
Probab=96.16 E-value=6.4 Score=53.30 Aligned_cols=45 Identities=20% Similarity=0.259 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 001692 641 ETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILR 685 (1027)
Q Consensus 641 ele~~~~~~~~~l~~~~~~~~~l~~~~~~Lee~l~~le~e~~~L~ 685 (1027)
+|+...+....++++.+.++.+++.++..++..++.++.+...+.
T Consensus 439 eLe~~LenF~aklee~e~qL~elE~kL~~lea~leql~~~~~~l~ 483 (1486)
T PRK04863 439 NAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQLVR 483 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444555555555555555555555555555555554443
No 77
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=96.13 E-value=0.59 Score=53.04 Aligned_cols=15 Identities=33% Similarity=0.503 Sum_probs=7.0
Q ss_pred HHHHHHHHHHhHHHH
Q 001692 666 AMHRLEEKVSDMETE 680 (1027)
Q Consensus 666 ~~~~Lee~l~~le~e 680 (1027)
++..|+.++..|+..
T Consensus 277 Ev~~Lk~~~~~Le~~ 291 (325)
T PF08317_consen 277 EVKRLKAKVDALEKL 291 (325)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444443
No 78
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=96.09 E-value=9 Score=51.49 Aligned_cols=10 Identities=10% Similarity=-0.071 Sum_probs=6.8
Q ss_pred hhHHHHHHhh
Q 001692 1010 LAELELWCCQ 1019 (1027)
Q Consensus 1010 ls~Le~W~~~ 1019 (1027)
+..|++|+.-
T Consensus 965 ~~~l~~~~~~ 974 (1201)
T PF12128_consen 965 APDLQELLDV 974 (1201)
T ss_pred HHHHHHHHHh
Confidence 7777777654
No 79
>PHA02562 46 endonuclease subunit; Provisional
Probab=95.94 E-value=1.6 Score=53.63 Aligned_cols=79 Identities=19% Similarity=0.252 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 001692 608 HAVVEELTSENEKLKTLVSSLEKKIDETEK----------KFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDM 677 (1027)
Q Consensus 608 ~~~~~~L~~e~~kLe~~l~~l~~~l~elek----------~~~ele~~~~~~~~~l~~~~~~~~~l~~~~~~Lee~l~~l 677 (1027)
..++..+...+..++.++..++..+.+++. ++.+++....+....+.....+...++.++..|++....+
T Consensus 298 ~~~~~~l~d~i~~l~~~l~~l~~~i~~~~~~~~~~~~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~ 377 (562)
T PHA02562 298 PDRITKIKDKLKELQHSLEKLDTAIDELEEIMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDN 377 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhch
Confidence 445555555555555555555555553332 2222222333333333333333444444444444444444
Q ss_pred HHHHHHHHH
Q 001692 678 ETENQILRQ 686 (1027)
Q Consensus 678 e~e~~~L~q 686 (1027)
++++..+..
T Consensus 378 ~~~l~~l~~ 386 (562)
T PHA02562 378 AEELAKLQD 386 (562)
T ss_pred HHHHHHHHH
Confidence 444444443
No 80
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=95.92 E-value=2 Score=45.07 Aligned_cols=79 Identities=20% Similarity=0.245 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001692 608 HAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQAL-EAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1027)
Q Consensus 608 ~~~~~~L~~e~~kLe~~l~~l~~~l~elek~~~ele~~~~~~~~~l~-~~~~~~~~l~~~~~~Lee~l~~le~e~~~L~q 686 (1027)
..++..+++++..|+-+.+.++.+...++.++.++.........++. ...-+..-|+..+..|.+.+...+.++...-.
T Consensus 92 k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQk~~~kn~lLEkKl~~l~~~lE~keaqL~evl~ 171 (201)
T PF13851_consen 92 KARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQKTGLKNLLLEKKLQALSEQLEKKEAQLNEVLA 171 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777888888888888888888888888888777666655553 34455667888888888888888888876543
No 81
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.86 E-value=2.8 Score=45.36 Aligned_cols=23 Identities=22% Similarity=0.354 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 001692 560 QENAKLQSALQEMQLQFKESKEK 582 (1027)
Q Consensus 560 ~e~~~L~~~l~~le~~l~~~~~~ 582 (1027)
.++.+++.++..++.++++.++.
T Consensus 73 ~~i~~~~~eik~l~~eI~~~~~~ 95 (265)
T COG3883 73 KEIDQSKAEIKKLQKEIAELKEN 95 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444443
No 82
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=95.84 E-value=8.1 Score=48.89 Aligned_cols=14 Identities=7% Similarity=0.166 Sum_probs=5.7
Q ss_pred HHHHHHHHhHHHHH
Q 001692 668 HRLEEKVSDMETEN 681 (1027)
Q Consensus 668 ~~Lee~l~~le~e~ 681 (1027)
.+...+|..|+.++
T Consensus 1727 ~~~~aeL~~Le~r~ 1740 (1758)
T KOG0994|consen 1727 EDKAAELAGLEKRV 1740 (1758)
T ss_pred HHHHHHhhhHHHHH
Confidence 33333444444444
No 83
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=95.81 E-value=3.6 Score=45.89 Aligned_cols=74 Identities=20% Similarity=0.275 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 001692 608 HAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETEN 681 (1027)
Q Consensus 608 ~~~~~~L~~e~~kLe~~l~~l~~~l~elek~~~ele~~~~~~~~~l~~~~~~~~~l~~~~~~Lee~l~~le~e~ 681 (1027)
...++..++++...+........++....+++..+..+.......+.+-++++..++.....|+.++..|+.--
T Consensus 209 ~~a~q~r~~ela~r~aa~Qq~~q~i~qrd~~i~q~~q~iaar~e~I~~re~~lq~lEt~q~~leqeva~le~yy 282 (499)
T COG4372 209 ANAAQARTEELARRAAAAQQTAQAIQQRDAQISQKAQQIAARAEQIRERERQLQRLETAQARLEQEVAQLEAYY 282 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666777777777777777777666666666666665566666666666666666666666666666533
No 84
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=95.81 E-value=1.3 Score=43.21 Aligned_cols=28 Identities=29% Similarity=0.579 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHhc
Q 001692 661 VQLKTAMHRLEEKVSDMETENQILRQQS 688 (1027)
Q Consensus 661 ~~l~~~~~~Lee~l~~le~e~~~L~qq~ 688 (1027)
..++.++..++..+..|..+|..|-.|.
T Consensus 101 ~~le~e~~~~~~r~~dL~~QN~lLh~Ql 128 (132)
T PF07926_consen 101 EQLEKELSELEQRIEDLNEQNKLLHDQL 128 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666677777777777666654
No 85
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=95.80 E-value=1.4 Score=43.05 Aligned_cols=40 Identities=20% Similarity=0.217 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 001692 641 ETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETE 680 (1027)
Q Consensus 641 ele~~~~~~~~~l~~~~~~~~~l~~~~~~Lee~l~~le~e 680 (1027)
.+..++..+...++..+.++.+|+....++...|..++.+
T Consensus 77 ~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~~~~l~~~E~e 116 (140)
T PF10473_consen 77 TLRSEKENLDKELQKKQEKVSELESLNSSLENLLQEKEQE 116 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333333333
No 86
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=95.76 E-value=1.7 Score=52.31 Aligned_cols=49 Identities=22% Similarity=0.285 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001692 608 HAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEA 656 (1027)
Q Consensus 608 ~~~~~~L~~e~~kLe~~l~~l~~~l~elek~~~ele~~~~~~~~~l~~~ 656 (1027)
...+..|+.....|+..+.+++.+...+.+.++...++.+.+..+|..+
T Consensus 161 q~~l~sL~~k~~~Le~~L~~le~~r~~e~~~La~~q~e~d~L~~qLsk~ 209 (739)
T PF07111_consen 161 QEALASLTSKAEELEKSLESLETRRAGEAKELAEAQREADLLREQLSKT 209 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556666666666677666666666655566665555555555555433
No 87
>PRK03918 chromosome segregation protein; Provisional
Probab=95.75 E-value=0.8 Score=59.55 Aligned_cols=76 Identities=13% Similarity=0.210 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 001692 610 VVEELTSENEKLKTLVSSLEKKIDETE-----KKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQIL 684 (1027)
Q Consensus 610 ~~~~L~~e~~kLe~~l~~l~~~l~ele-----k~~~ele~~~~~~~~~l~~~~~~~~~l~~~~~~Lee~l~~le~e~~~L 684 (1027)
.+..+..++..++.++.+++..+++++ .....++...+.+..++......+..++..+..++.++..++.++..+
T Consensus 627 ~l~~~~~~i~~l~~~i~~l~~~~~~l~~~~~~~~~~~l~~~~~~l~~~l~~l~~~~~~l~~~i~~l~~~i~~~~~~~~~l 706 (880)
T PRK03918 627 ELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEER 706 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444445544444444 444444555555555555555566666666666666666555555444
Q ss_pred H
Q 001692 685 R 685 (1027)
Q Consensus 685 ~ 685 (1027)
+
T Consensus 707 ~ 707 (880)
T PRK03918 707 E 707 (880)
T ss_pred H
Confidence 3
No 88
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=95.74 E-value=0.45 Score=52.27 Aligned_cols=60 Identities=15% Similarity=0.218 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001692 614 LTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEK 673 (1027)
Q Consensus 614 L~~e~~kLe~~l~~l~~~l~elek~~~ele~~~~~~~~~l~~~~~~~~~l~~~~~~Lee~ 673 (1027)
|..++.+|+..+..+-...+++...+...+..-..+..++.+++++..+....+.+.+++
T Consensus 239 LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~~mL~EaQEE 298 (306)
T PF04849_consen 239 LLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAECMAMLHEAQEE 298 (306)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333333334444444443333333333333
No 89
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=95.74 E-value=3.1 Score=43.33 Aligned_cols=68 Identities=25% Similarity=0.307 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 001692 611 VEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETEN 681 (1027)
Q Consensus 611 ~~~L~~e~~kLe~~l~~l~~~l~elek~~~ele~~~~~~~~~l~~~~~~~~~l~~~~~~Lee~l~~le~e~ 681 (1027)
.+.|...+..++..+++...++..+++++.-..+ ....++.....+...++.++..|.+++..|...+
T Consensus 120 ReeL~~kL~~~~~~l~~~~~ki~~Lek~leL~~k---~~~rql~~e~kK~~~~~~~~~~l~~ei~~L~~kl 187 (194)
T PF15619_consen 120 REELQRKLSQLEQKLQEKEKKIQELEKQLELENK---SFRRQLASEKKKHKEAQEEVKSLQEEIQRLNQKL 187 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555443332221 1222233333344444444444444444444433
No 90
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=95.73 E-value=4.8 Score=45.42 Aligned_cols=36 Identities=25% Similarity=0.425 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001692 520 ARETGALQAAKNKLEKQVEELTWRLQLEKRMRVDME 555 (1027)
Q Consensus 520 a~~~~~L~~~k~~LE~kv~el~~rl~~e~~~~~ele 555 (1027)
..+..++......+...+.+++.+++.+...+..++
T Consensus 67 ~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le 102 (312)
T PF00038_consen 67 SKEKARLELEIDNLKEELEDLRRKYEEELAERKDLE 102 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666677777777777776655555443
No 91
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=95.71 E-value=5.6 Score=48.26 Aligned_cols=57 Identities=19% Similarity=0.186 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001692 630 KKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1027)
Q Consensus 630 ~~l~elek~~~ele~~~~~~~~~l~~~~~~~~~l~~~~~~Lee~l~~le~e~~~L~q 686 (1027)
+....++++-..++....+++....+.+.+-..|.+++.+.++-++.++++++.++|
T Consensus 249 k~~s~i~E~d~~lq~sak~ieE~m~qlk~kns~L~~ElSqkeelVk~~qeeLd~lkq 305 (1265)
T KOG0976|consen 249 KTCSMIEEQDMDLQASAKEIEEKMRQLKAKNSVLGDELSQKEELVKELQEELDTLKQ 305 (1265)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444455555556666677777777777777777666
No 92
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=95.70 E-value=7.7 Score=47.60 Aligned_cols=84 Identities=17% Similarity=0.141 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001692 608 HAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1027)
Q Consensus 608 ~~~~~~L~~e~~kLe~~l~~l~~~l~elek~~~ele~~~~~~~~~l~~~~~~~~~l~~~~~~Lee~l~~le~e~~~L~qq 687 (1027)
......+.++...+...++.......+..+....|+...++..+++++.+..+.+...++..+..+...+++|+..|+.+
T Consensus 537 t~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~k 616 (698)
T KOG0978|consen 537 TSNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRK 616 (698)
T ss_pred hHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456667777777777777777777888888888888888888888888888888888888888889999999999887
Q ss_pred cccc
Q 001692 688 SLLS 691 (1027)
Q Consensus 688 ~~~~ 691 (1027)
....
T Consensus 617 le~~ 620 (698)
T KOG0978|consen 617 LERL 620 (698)
T ss_pred HHHh
Confidence 6543
No 93
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=95.70 E-value=5.7 Score=49.69 Aligned_cols=25 Identities=24% Similarity=0.348 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001692 521 RETGALQAAKNKLEKQVEELTWRLQ 545 (1027)
Q Consensus 521 ~~~~~L~~~k~~LE~kv~el~~rl~ 545 (1027)
+...+|......+|+++.-|++.++
T Consensus 170 ~~~~hL~velAdle~kir~LrqElE 194 (1195)
T KOG4643|consen 170 KKNLHLEVELADLEKKIRTLRQELE 194 (1195)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445677777788888888877776
No 94
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=95.70 E-value=0.66 Score=54.98 Aligned_cols=76 Identities=28% Similarity=0.377 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 001692 610 VVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILR 685 (1027)
Q Consensus 610 ~~~~L~~e~~kLe~~l~~l~~~l~elek~~~ele~~~~~~~~~l~~~~~~~~~l~~~~~~Lee~l~~le~e~~~L~ 685 (1027)
....+..++.+|+.++++++.++++.++.....+.........+.+++.++..+......+++++..|..|+..|+
T Consensus 107 ~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~ 182 (546)
T KOG0977|consen 107 ERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLR 182 (546)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 3444555555556666666555555555555555444444444444444444444444444444444444443333
No 95
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=95.62 E-value=2.8 Score=49.88 Aligned_cols=81 Identities=19% Similarity=0.190 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH----HHHHH
Q 001692 608 HAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDME----TENQI 683 (1027)
Q Consensus 608 ~~~~~~L~~e~~kLe~~l~~l~~~l~elek~~~ele~~~~~~~~~l~~~~~~~~~l~~~~~~Lee~l~~le----~e~~~ 683 (1027)
...+..++.+..-++..+..++..+..++++...+..++....+++++..---.+++..++.|.++|.-+. .|+..
T Consensus 147 ~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~~~h~~eI~e 226 (546)
T KOG0977|consen 147 LSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELAFLKRIHKQEIEE 226 (546)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccHHHHHH
Confidence 44555556666666666666666666666666666555555555555544444566666666666666655 45555
Q ss_pred HHHhc
Q 001692 684 LRQQS 688 (1027)
Q Consensus 684 L~qq~ 688 (1027)
++.+.
T Consensus 227 ~~~~~ 231 (546)
T KOG0977|consen 227 ERRKA 231 (546)
T ss_pred HHHHH
Confidence 54433
No 96
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=95.62 E-value=2.8 Score=45.88 Aligned_cols=52 Identities=33% Similarity=0.305 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001692 635 TEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1027)
Q Consensus 635 lek~~~ele~~~~~~~~~l~~~~~~~~~l~~~~~~Lee~l~~le~e~~~L~q 686 (1027)
.++.+.+...+.+-+..+++..+..-.-+.+++..|++-++.++.....++-
T Consensus 243 vek~i~EfdiEre~LRAel~ree~r~K~lKeEmeSLkeiVkdlEA~hQh~~p 294 (561)
T KOG1103|consen 243 VEKLIEEFDIEREFLRAELEREEKRQKMLKEEMESLKEIVKDLEADHQHLRP 294 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCc
Confidence 4455566666666666666666666677888888888888888888877654
No 97
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=95.60 E-value=5.1 Score=49.43 Aligned_cols=54 Identities=17% Similarity=0.139 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001692 608 HAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIV 661 (1027)
Q Consensus 608 ~~~~~~L~~e~~kLe~~l~~l~~~l~elek~~~ele~~~~~~~~~l~~~~~~~~ 661 (1027)
+++...|...+.++..+.+..+.+.++..+.+..++.++..+..+++.++.++.
T Consensus 465 ~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l~~e~~~lq~~~~ 518 (980)
T KOG0980|consen 465 EEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQELALLLIELEELQRTLS 518 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334445555555555555555566666666777777777777777766666544
No 98
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues. Calmodulin-binding motif.
Probab=95.57 E-value=0.012 Score=39.93 Aligned_cols=21 Identities=43% Similarity=0.605 Sum_probs=16.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHH
Q 001692 423 EASCLRIQRDLRMYLAKKAYK 443 (1027)
Q Consensus 423 ~~Aai~IQ~~~R~~~~rk~y~ 443 (1027)
..+|++||++||||.+|+.|.
T Consensus 3 ~~aa~~IQa~~Rg~~~r~~y~ 23 (26)
T smart00015 3 TRAAIIIQAAWRGYLARKRYK 23 (26)
T ss_pred HHHHHHHHHHHHHHHHHHhhh
Confidence 357788888888888888773
No 99
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=95.54 E-value=8.1 Score=47.81 Aligned_cols=37 Identities=14% Similarity=0.223 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001692 608 HAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSK 644 (1027)
Q Consensus 608 ~~~~~~L~~e~~kLe~~l~~l~~~l~elek~~~ele~ 644 (1027)
+.+.+...+..+.+++++..+..++++++..+..+..
T Consensus 486 ~~K~e~~~~~le~l~~El~~l~~e~~~lq~~~~~~~q 522 (980)
T KOG0980|consen 486 ETKTESQAKALESLRQELALLLIELEELQRTLSNLAQ 522 (980)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 3344444444445555555554444444444433333
No 100
>PHA02562 46 endonuclease subunit; Provisional
Probab=95.51 E-value=2.9 Score=51.38 Aligned_cols=26 Identities=12% Similarity=0.325 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001692 615 TSENEKLKTLVSSLEKKIDETEKKFE 640 (1027)
Q Consensus 615 ~~e~~kLe~~l~~l~~~l~elek~~~ 640 (1027)
......|+..+.+++.++..++..+.
T Consensus 298 ~~~~~~l~d~i~~l~~~l~~l~~~i~ 323 (562)
T PHA02562 298 PDRITKIKDKLKELQHSLEKLDTAID 323 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444
No 101
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=95.50 E-value=2.7 Score=47.19 Aligned_cols=79 Identities=14% Similarity=0.232 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhHHHHHHHHH
Q 001692 610 VVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHR----LEEKVSDMETENQILR 685 (1027)
Q Consensus 610 ~~~~L~~e~~kLe~~l~~l~~~l~elek~~~ele~~~~~~~~~l~~~~~~~~~l~~~~~~----Lee~l~~le~e~~~L~ 685 (1027)
....+..++.++..++.....++++++.++.+++...++...+..+.+..+.+++..... -..++..|+.+.+.|+
T Consensus 205 eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~r~~t~~Ei~~Lk~~~~~Le 284 (312)
T smart00787 205 ELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCRGFTFKEIEKLKEQLKLLQ 284 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444444444444444444433444444333333222 1245667777777777
Q ss_pred Hhc
Q 001692 686 QQS 688 (1027)
Q Consensus 686 qq~ 688 (1027)
+..
T Consensus 285 ~l~ 287 (312)
T smart00787 285 SLT 287 (312)
T ss_pred HHh
Confidence 643
No 102
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=95.50 E-value=3.4 Score=42.19 Aligned_cols=80 Identities=23% Similarity=0.203 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 001692 608 HAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERL-------KQALEAESKIVQLKTAMHRLEEKVSDMETE 680 (1027)
Q Consensus 608 ~~~~~~L~~e~~kLe~~l~~l~~~l~elek~~~ele~~~~~~~-------~~l~~~~~~~~~l~~~~~~Lee~l~~le~e 680 (1027)
..++..|+.++.++..+.+.+.++..++-.....|+..+-.-+ ..+.+....+.++...+.....-...|+.|
T Consensus 101 ~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~~~e~l~~~~da~l~e~t~~i~eL~~~ieEy~~~teeLR~e 180 (193)
T PF14662_consen 101 VAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQLCEFESLICQRDAILSERTQQIEELKKTIEEYRSITEELRLE 180 (193)
T ss_pred HHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667777777777777776666666555555554442222 222223333444444444444444444444
Q ss_pred HHHHHHh
Q 001692 681 NQILRQQ 687 (1027)
Q Consensus 681 ~~~L~qq 687 (1027)
+..|++|
T Consensus 181 ~s~LEeq 187 (193)
T PF14662_consen 181 KSRLEEQ 187 (193)
T ss_pred HHHHHHH
Confidence 4444443
No 103
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=95.44 E-value=4.2 Score=42.87 Aligned_cols=79 Identities=23% Similarity=0.284 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 001692 608 HAVVEELTSENEKLKT-----LVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQ 682 (1027)
Q Consensus 608 ~~~~~~L~~e~~kLe~-----~l~~l~~~l~elek~~~ele~~~~~~~~~l~~~~~~~~~l~~~~~~Lee~l~~le~e~~ 682 (1027)
-.++..|..|+++|-. .+.+|+.++.-.+...++++..-+++-.-++++.+.++..++++--|+++++..+.+++
T Consensus 216 MAKCR~L~qENeElG~q~s~Gria~Le~eLAmQKs~seElkssq~eL~dfm~eLdedVEgmqsTiliLQq~Lketr~~Iq 295 (330)
T KOG2991|consen 216 MAKCRTLQQENEELGHQASEGRIAELEIELAMQKSQSEELKSSQEELYDFMEELDEDVEGMQSTILILQQKLKETRKEIQ 295 (330)
T ss_pred HHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHH
Confidence 4556666666666532 34445554444444444555444444444444555555555555555555555555554
Q ss_pred HHHH
Q 001692 683 ILRQ 686 (1027)
Q Consensus 683 ~L~q 686 (1027)
.|.+
T Consensus 296 ~l~k 299 (330)
T KOG2991|consen 296 RLKK 299 (330)
T ss_pred HHHH
Confidence 4443
No 104
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.42 E-value=5.9 Score=53.81 Aligned_cols=20 Identities=10% Similarity=0.134 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001692 522 ETGALQAAKNKLEKQVEELT 541 (1027)
Q Consensus 522 ~~~~L~~~k~~LE~kv~el~ 541 (1027)
+...++.....++.++.+|+
T Consensus 844 ~~e~l~~e~e~~~~eI~~Lq 863 (1311)
T TIGR00606 844 KIELNRKLIQDQQEQIQHLK 863 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444443
No 105
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=95.39 E-value=1 Score=51.88 Aligned_cols=75 Identities=20% Similarity=0.210 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001692 612 EELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1027)
Q Consensus 612 ~~L~~e~~kLe~~l~~l~~~l~elek~~~ele~~~~~~~~~l~~~~~~~~~l~~~~~~Lee~l~~le~e~~~L~q 686 (1027)
.....++.+|..++-++++++....-+.+++...+......-++.+....++++...+..+.+..-++|++.|+.
T Consensus 229 ~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDkyAE~m~~~~EaeeELk~lrs 303 (596)
T KOG4360|consen 229 SRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDKYAECMQMLHEAEEELKCLRS 303 (596)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 334445555555555555555444433333333333222222333444444555555555555666666666654
No 106
>PRK09039 hypothetical protein; Validated
Probab=95.38 E-value=0.42 Score=54.50 Aligned_cols=18 Identities=11% Similarity=0.113 Sum_probs=10.0
Q ss_pred hhhhhHHHHHHHHHHHHh
Q 001692 788 EAERTSVFDRLIQMIGSA 805 (1027)
Q Consensus 788 ~~~~~~ll~~i~~~I~~~ 805 (1027)
.++....|+.++..|..+
T Consensus 236 ~~~~~~~L~~ia~~l~~~ 253 (343)
T PRK09039 236 NPEGQAEIAKLAAALIEL 253 (343)
T ss_pred CHHHHHHHHHHHHHHHHh
Confidence 344455666666666553
No 107
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=95.32 E-value=4.5 Score=42.51 Aligned_cols=77 Identities=19% Similarity=0.236 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH---HHHHHHHHhHHHHHH
Q 001692 613 ELTSENEKLKTLVSSLEKKIDETEKKFEETSKISE-------ERLKQALEAESKIVQLKTAM---HRLEEKVSDMETENQ 682 (1027)
Q Consensus 613 ~L~~e~~kLe~~l~~l~~~l~elek~~~ele~~~~-------~~~~~l~~~~~~~~~l~~~~---~~Lee~l~~le~e~~ 682 (1027)
.|+..+..+....+.+.+-+.++++....|++.++ +.+.+|..+-++..-|+.++ +.|-+.+.+|++|-.
T Consensus 95 ~Leddlsqt~aikeql~kyiReLEQaNDdLErakRati~sleDfeqrLnqAIErnAfLESELdEke~llesvqRLkdEar 174 (333)
T KOG1853|consen 95 QLEDDLSQTHAIKEQLRKYIRELEQANDDLERAKRATIYSLEDFEQRLNQAIERNAFLESELDEKEVLLESVQRLKDEAR 174 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 34444444444444444455555555555544444 44555555555554454444 334566677888888
Q ss_pred HHHHhcc
Q 001692 683 ILRQQSL 689 (1027)
Q Consensus 683 ~L~qq~~ 689 (1027)
.|+|...
T Consensus 175 dlrqela 181 (333)
T KOG1853|consen 175 DLRQELA 181 (333)
T ss_pred HHHHHHH
Confidence 8887543
No 108
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.27 E-value=1.4 Score=59.79 Aligned_cols=29 Identities=14% Similarity=0.288 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 001692 890 LFKQQLAAYVEKIYGIIRDNLKKELSSLL 918 (1027)
Q Consensus 890 ~f~q~L~~~~~~iy~~l~~~~~k~L~~~l 918 (1027)
.|...|...+++.+.+=|..|.+.|.-+-
T Consensus 1122 ~~~~~~~~~~~~~~~~~~~~~n~~~~~~w 1150 (1311)
T TIGR00606 1122 IYYKTLDQAIMKFHSMKMEEINKIIRDLW 1150 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666666666666666655555443
No 109
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=95.26 E-value=11 Score=48.43 Aligned_cols=74 Identities=19% Similarity=0.311 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhHHHHHHHH
Q 001692 611 VEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAES--KIVQLKTAMHRLEEKVSDMETENQIL 684 (1027)
Q Consensus 611 ~~~L~~e~~kLe~~l~~l~~~l~elek~~~ele~~~~~~~~~l~~~~~--~~~~l~~~~~~Lee~l~~le~e~~~L 684 (1027)
-.++..+...++..+..++..+.+....+..++..+++......+.+. .-..++.+++.+++++.....|.+.+
T Consensus 618 ~~~~~e~~~~l~~~i~sL~~~~~~~~~~l~k~~el~r~~~e~~~~~ek~~~e~~~e~~lk~~q~~~eq~~~E~~~~ 693 (1317)
T KOG0612|consen 618 RTEISEIIAELKEEISSLEETLKAGKKELLKVEELKRENQERISDSEKEALEIKLERKLKMLQNELEQENAEHHRL 693 (1317)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555566666666666655554444444433333333322222 22345556666666666666666655
No 110
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=95.26 E-value=4.1 Score=41.65 Aligned_cols=65 Identities=20% Similarity=0.250 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 001692 610 VVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETEN 681 (1027)
Q Consensus 610 ~~~~L~~e~~kLe~~l~~l~~~l~elek~~~ele~~~~~~~~~l~~~~~~~~~l~~~~~~Lee~l~~le~e~ 681 (1027)
+...|..++..|+.++-..+.-+..-+..+.+. ....+++...+.+...-...|+.++++|++.+
T Consensus 124 ~~~eL~~~~~~Lq~Ql~~~e~l~~~~da~l~e~-------t~~i~eL~~~ieEy~~~teeLR~e~s~LEeql 188 (193)
T PF14662_consen 124 RSKELATEKATLQRQLCEFESLICQRDAILSER-------TQQIEELKKTIEEYRSITEELRLEKSRLEEQL 188 (193)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-------HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444333333333333 33344444445555555555555555555554
No 111
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=95.24 E-value=3.7 Score=47.01 Aligned_cols=18 Identities=39% Similarity=0.394 Sum_probs=7.4
Q ss_pred HHHHHHHhHHHHHHHHHH
Q 001692 669 RLEEKVSDMETENQILRQ 686 (1027)
Q Consensus 669 ~Lee~l~~le~e~~~L~q 686 (1027)
.|+++..+-++++-..||
T Consensus 496 slqeEfQk~ekenl~ERq 513 (527)
T PF15066_consen 496 SLQEEFQKHEKENLEERQ 513 (527)
T ss_pred HHHHHHHHHHHhhHHHHH
Confidence 344444444444433333
No 112
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=95.10 E-value=6.1 Score=42.72 Aligned_cols=48 Identities=21% Similarity=0.306 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcc
Q 001692 642 TSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQSL 689 (1027)
Q Consensus 642 le~~~~~~~~~l~~~~~~~~~l~~~~~~Lee~l~~le~e~~~L~qq~~ 689 (1027)
..........+.......+....+.+.+|+++|..|+.|++.|+.++.
T Consensus 177 ~~~~l~~~~~~N~~m~kei~~~re~i~el~e~I~~L~~eV~~L~~~~~ 224 (258)
T PF15397_consen 177 MQPALLQRTLENQVMQKEIVQFREEIDELEEEIPQLRAEVEQLQAQAQ 224 (258)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 333444444455567777888888999999999999999999988765
No 113
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.05 E-value=5.8 Score=42.96 Aligned_cols=27 Identities=30% Similarity=0.351 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001692 557 AKTQENAKLQSALQEMQLQFKESKEKL 583 (1027)
Q Consensus 557 ~~~~e~~~L~~~l~~le~~l~~~~~~l 583 (1027)
....++++++.+|.+++..+.+-++-+
T Consensus 77 ~~~~eik~l~~eI~~~~~~I~~r~~~l 103 (265)
T COG3883 77 QSKAEIKKLQKEIAELKENIVERQELL 103 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344667777888888887777766654
No 114
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=94.99 E-value=2.1 Score=52.21 Aligned_cols=35 Identities=17% Similarity=0.221 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhccc
Q 001692 656 AESKIVQLKTAMHRLEEKVSDMETENQILRQQSLL 690 (1027)
Q Consensus 656 ~~~~~~~l~~~~~~Lee~l~~le~e~~~L~qq~~~ 690 (1027)
...++..+..++..+.+++...++....|.....+
T Consensus 445 ~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~ 479 (594)
T PF05667_consen 445 KLQEIKELREEIKEIEEEIRQKEELYKQLVKELEK 479 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455555666666666666666666666554433
No 115
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.96 E-value=3.8 Score=47.71 Aligned_cols=31 Identities=19% Similarity=0.308 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001692 610 VVEELTSENEKLKTLVSSLEKKIDETEKKFE 640 (1027)
Q Consensus 610 ~~~~L~~e~~kLe~~l~~l~~~l~elek~~~ 640 (1027)
++-.|+.+++.++..+...+..++.+.+...
T Consensus 108 kI~eleneLKq~r~el~~~q~E~erl~~~~s 138 (772)
T KOG0999|consen 108 KILELENELKQLRQELTNVQEENERLEKVHS 138 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666655555555444333
No 116
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=94.96 E-value=2.3 Score=45.36 Aligned_cols=31 Identities=23% Similarity=0.293 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHhc
Q 001692 658 SKIVQLKTAMHRLEEKVSDMETENQILRQQS 688 (1027)
Q Consensus 658 ~~~~~l~~~~~~Lee~l~~le~e~~~L~qq~ 688 (1027)
.+.++|++....-=++-++|+.|+..|+-+.
T Consensus 162 sk~e~L~ekynkeveerkrle~e~k~lq~k~ 192 (307)
T PF10481_consen 162 SKYEELQEKYNKEVEERKRLEAEVKALQAKK 192 (307)
T ss_pred hhHHHHHHHHHHHHHHHhhHHHHHHHHhccc
Confidence 3455666665555566777888888887543
No 117
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues. Calmodulin-binding motif.
Probab=94.91 E-value=0.028 Score=38.16 Aligned_cols=20 Identities=60% Similarity=0.871 Sum_probs=16.6
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 001692 471 TRASILIQSHCRKYLARLHY 490 (1027)
Q Consensus 471 ~~aa~~IQ~~~R~~~~r~~~ 490 (1027)
..+|+.||++||||++|+.|
T Consensus 3 ~~aa~~IQa~~Rg~~~r~~y 22 (26)
T smart00015 3 TRAAIIIQAAWRGYLARKRY 22 (26)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 45788888888888888887
No 118
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=94.84 E-value=3.5 Score=46.28 Aligned_cols=14 Identities=14% Similarity=0.472 Sum_probs=5.9
Q ss_pred HHHHHHHHHHhHHH
Q 001692 666 AMHRLEEKVSDMET 679 (1027)
Q Consensus 666 ~~~~Lee~l~~le~ 679 (1027)
++..|+.++..++.
T Consensus 272 Ei~~Lk~~~~~Le~ 285 (312)
T smart00787 272 EIEKLKEQLKLLQS 285 (312)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444443
No 119
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=94.82 E-value=5.7 Score=43.53 Aligned_cols=8 Identities=50% Similarity=0.962 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 001692 533 LEKQVEEL 540 (1027)
Q Consensus 533 LE~kv~el 540 (1027)
++..+..|
T Consensus 112 ler~i~~L 119 (294)
T COG1340 112 LEREIERL 119 (294)
T ss_pred HHHHHHHH
Confidence 33333333
No 120
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=94.81 E-value=17 Score=46.29 Aligned_cols=39 Identities=5% Similarity=0.026 Sum_probs=19.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001692 424 ASCLRIQRDLRMYLAKKAYKDMCFSAVCIQTGMRGMAAR 462 (1027)
Q Consensus 424 ~Aai~IQ~~~R~~~~rk~y~~~r~a~~~iQs~~Rg~~aR 462 (1027)
.++..-|..|..|..-+.-.+...-+...++-.+....+
T Consensus 211 ~~~q~e~~L~qLfhvE~~i~k~~~els~~~~ei~~~~~~ 249 (1141)
T KOG0018|consen 211 GKAQKEQFLWELFHVEACIEKANDELSRLNAEIPKLKER 249 (1141)
T ss_pred HHHHHHHHHHHHhhhhhhHhhhhHHHHHHhhhhHHHHhh
Confidence 355566666666655555444444444444444444333
No 121
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=94.79 E-value=4.2 Score=51.02 Aligned_cols=27 Identities=33% Similarity=0.537 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001692 557 AKTQENAKLQSALQEMQLQFKESKEKL 583 (1027)
Q Consensus 557 ~~~~e~~~L~~~l~~le~~l~~~~~~l 583 (1027)
++.++...|+.+++.+...++.....+
T Consensus 333 ~ke~~~~~Lqsdve~Lr~rle~k~~~l 359 (775)
T PF10174_consen 333 AKEQEAEMLQSDVEALRFRLEEKNSQL 359 (775)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 344555556666666665555554444
No 122
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=94.75 E-value=7.8 Score=44.02 Aligned_cols=9 Identities=22% Similarity=0.364 Sum_probs=3.7
Q ss_pred HHHHHHHhh
Q 001692 753 VDALINCVA 761 (1027)
Q Consensus 753 ~~~Ll~~i~ 761 (1027)
.|.+|-+|+
T Consensus 484 id~iilnii 492 (502)
T KOG0982|consen 484 IDFIILNII 492 (502)
T ss_pred HhHHHHHHH
Confidence 344444443
No 123
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=94.70 E-value=8.6 Score=42.54 Aligned_cols=62 Identities=19% Similarity=0.310 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001692 615 TSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSD 676 (1027)
Q Consensus 615 ~~e~~kLe~~l~~l~~~l~elek~~~ele~~~~~~~~~l~~~~~~~~~l~~~~~~Lee~l~~ 676 (1027)
..+...-+.++..|...+-+++++...+--+++++...|..+...-..|+.++.+|+++-..
T Consensus 226 ~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E 287 (306)
T PF04849_consen 226 TEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAE 287 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444455555555555566556666666666666666555555666666666665554
No 124
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=94.69 E-value=2.5 Score=45.03 Aligned_cols=69 Identities=20% Similarity=0.165 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcc
Q 001692 621 LKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQSL 689 (1027)
Q Consensus 621 Le~~l~~l~~~l~elek~~~ele~~~~~~~~~l~~~~~~~~~l~~~~~~Lee~l~~le~e~~~L~qq~~ 689 (1027)
|+.+...+.+..+.+++.+..+.-+..-.+..+.-++.++......+..|+.+++.++.|++..++.+.
T Consensus 65 LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~~~~ 133 (307)
T PF10481_consen 65 LKRENQSLMESCENLEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQQAAS 133 (307)
T ss_pred hhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 333344444444444555555555554445555556666666777777778888888888887766543
No 125
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=94.69 E-value=3.1 Score=50.77 Aligned_cols=43 Identities=19% Similarity=0.278 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001692 645 ISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1027)
Q Consensus 645 ~~~~~~~~l~~~~~~~~~l~~~~~~Lee~l~~le~e~~~L~qq 687 (1027)
+......+++.++.++..+..++..-++..+.|..+++.+-+.
T Consensus 441 e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~ 483 (594)
T PF05667_consen 441 ESKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPKD 483 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 3444555666666677777777777777777777776666554
No 126
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=94.62 E-value=4.9 Score=39.37 Aligned_cols=31 Identities=26% Similarity=0.311 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001692 612 EELTSENEKLKTLVSSLEKKIDETEKKFEET 642 (1027)
Q Consensus 612 ~~L~~e~~kLe~~l~~l~~~l~elek~~~el 642 (1027)
..+..++..|.+.++..+.++.+++......
T Consensus 76 ~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~ 106 (140)
T PF10473_consen 76 DTLRSEKENLDKELQKKQEKVSELESLNSSL 106 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 3344444444444444444444444433333
No 127
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=94.58 E-value=8.7 Score=42.45 Aligned_cols=21 Identities=24% Similarity=0.446 Sum_probs=12.2
Q ss_pred HHHHHHHHhHHHHHHHHHHhc
Q 001692 668 HRLEEKVSDMETENQILRQQS 688 (1027)
Q Consensus 668 ~~Lee~l~~le~e~~~L~qq~ 688 (1027)
..|..++..|..+...|+.+.
T Consensus 181 N~L~Kqm~~l~~eKr~Lq~~l 201 (310)
T PF09755_consen 181 NRLWKQMDKLEAEKRRLQEKL 201 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445555566666666666543
No 128
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=94.55 E-value=6.9 Score=40.77 Aligned_cols=68 Identities=29% Similarity=0.350 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhc
Q 001692 618 NEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQS 688 (1027)
Q Consensus 618 ~~kLe~~l~~l~~~l~elek~~~ele~~~~~~~~~l~~~~~~~~~l~~~~~~Lee~l~~le~e~~~L~qq~ 688 (1027)
..+|...++.++.++++.++++..|++..+ -........+..-......+..++..+..|+..|.++.
T Consensus 120 ReeL~~kL~~~~~~l~~~~~ki~~Lek~le---L~~k~~~rql~~e~kK~~~~~~~~~~l~~ei~~L~~kl 187 (194)
T PF15619_consen 120 REELQRKLSQLEQKLQEKEKKIQELEKQLE---LENKSFRRQLASEKKKHKEAQEEVKSLQEEIQRLNQKL 187 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555444222 11123444555566666777788888888888777653
No 129
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=94.54 E-value=4 Score=49.10 Aligned_cols=23 Identities=13% Similarity=0.179 Sum_probs=15.9
Q ss_pred CCCCCCchhhHHhhchhHHHHHHhhhhhc-cc
Q 001692 995 RECCTFSNGEYVKAGLAELELWCCQAKEE-VI 1025 (1027)
Q Consensus 995 ~~~cs~s~g~qIr~nls~Le~W~~~~~~e-~~ 1025 (1027)
++..-||| .++-.|+.+-|+. ||
T Consensus 756 ~DvlVWsN--------~RvirWV~~igL~eya 779 (916)
T KOG0249|consen 756 TDVLVWSN--------DRVIRWVQSIGLGEYA 779 (916)
T ss_pred ccceEeec--------HHHHHHHHhcCHHHHh
Confidence 45667887 4555699988874 44
No 130
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=94.54 E-value=9.4 Score=42.76 Aligned_cols=29 Identities=24% Similarity=0.335 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001692 658 SKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1027)
Q Consensus 658 ~~~~~l~~~~~~Lee~l~~le~e~~~L~q 686 (1027)
+.+..-++.++.||.....|+.|...|+.
T Consensus 252 e~I~~re~~lq~lEt~q~~leqeva~le~ 280 (499)
T COG4372 252 EQIRERERQLQRLETAQARLEQEVAQLEA 280 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555556655555554
No 131
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=94.54 E-value=5.9 Score=40.69 Aligned_cols=75 Identities=16% Similarity=0.213 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 001692 611 VEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALE-----AESKIVQLKTAMHRLEEKVSDMETENQILR 685 (1027)
Q Consensus 611 ~~~L~~e~~kLe~~l~~l~~~l~elek~~~ele~~~~~~~~~l~~-----~~~~~~~l~~~~~~Lee~l~~le~e~~~L~ 685 (1027)
...+..++...+..+..+++.+...+.....+.+...++..+... +-...+...+.+..++..+..++...+.+.
T Consensus 93 ~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~~~~~~~~P~ll~Dy~~~~~~~~~l~~~i~~l~rk~~~l~ 172 (177)
T PF13870_consen 93 LERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKLRQQGGLLGVPALLRDYDKTKEEVEELRKEIKELERKVEILE 172 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444444433322110 111233334444445555555555554443
No 132
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=94.52 E-value=10 Score=45.73 Aligned_cols=50 Identities=16% Similarity=0.205 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcc
Q 001692 640 EETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQSL 689 (1027)
Q Consensus 640 ~ele~~~~~~~~~l~~~~~~~~~l~~~~~~Lee~l~~le~e~~~L~qq~~ 689 (1027)
+..+-+..+....++..+.++..|..++..-...+..|+.++..|+++..
T Consensus 576 r~~e~e~~~k~kq~k~lenk~~~LrKqvEnk~K~ieeLqqeNk~LKKk~~ 625 (786)
T PF05483_consen 576 RSIECEILKKEKQMKILENKCNNLRKQVENKNKNIEELQQENKALKKKIT 625 (786)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 33344444455555666777777777777777777778888888877654
No 133
>PTZ00014 myosin-A; Provisional
Probab=94.49 E-value=0.053 Score=68.32 Aligned_cols=39 Identities=15% Similarity=0.004 Sum_probs=24.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001692 425 SCLRIQRDLRMYLAKKAYKDMCFSAVCIQTGMRGMAARN 463 (1027)
Q Consensus 425 Aai~IQ~~~R~~~~rk~y~~~r~a~~~iQs~~Rg~~aR~ 463 (1027)
.+..||++||+|++|+.|.+.+.+++.||+.+||+++++
T Consensus 779 ~~~~iq~~~r~~~~r~~~~~~~~~~~~iQ~~~R~~l~~~ 817 (821)
T PTZ00014 779 LVSVLEALILKIKKKRKVRKNIKSLVRIQAHLRRHLVIA 817 (821)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455666666666666666666666666666666655543
No 134
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=94.48 E-value=2.3 Score=48.01 Aligned_cols=30 Identities=13% Similarity=0.285 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001692 658 SKIVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1027)
Q Consensus 658 ~~~~~l~~~~~~Lee~l~~le~e~~~L~qq 687 (1027)
..+.+.+++....++-+..|..++..++.-
T Consensus 360 d~Lrrfq~ekeatqELieelrkelehlr~~ 389 (502)
T KOG0982|consen 360 DILRRFQEEKEATQELIEELRKELEHLRRR 389 (502)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 345567777777888888888888877753
No 135
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=94.35 E-value=5.6 Score=48.82 Aligned_cols=14 Identities=21% Similarity=0.311 Sum_probs=9.1
Q ss_pred cccHHHHHHHHHHH
Q 001692 945 SSHWQSIIDSLNTL 958 (1027)
Q Consensus 945 ~~~~~~il~~L~~~ 958 (1027)
.++...|+..|..+
T Consensus 572 npTAqqImqLL~ei 585 (617)
T PF15070_consen 572 NPTAQQIMQLLQEI 585 (617)
T ss_pred CchHHHHHHHhHhc
Confidence 55667777776554
No 136
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=94.22 E-value=27 Score=47.45 Aligned_cols=31 Identities=10% Similarity=0.119 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001692 518 MAARETGALQAAKNKLEKQVEELTWRLQLEK 548 (1027)
Q Consensus 518 ~~a~~~~~L~~~k~~LE~kv~el~~rl~~e~ 548 (1027)
...+.+..+++....|+++...++.-+...+
T Consensus 693 ~L~~~ie~~K~e~~tL~er~~~l~~~i~~~~ 723 (1822)
T KOG4674|consen 693 NLEKNLELTKEEVETLEERNKNLQSTISKQE 723 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666666666665555333
No 137
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=94.21 E-value=13 Score=46.48 Aligned_cols=43 Identities=14% Similarity=0.189 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 001692 641 ETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQI 683 (1027)
Q Consensus 641 ele~~~~~~~~~l~~~~~~~~~l~~~~~~Lee~l~~le~e~~~ 683 (1027)
++.+.+.++..++...+.++..++.++..+++++..++.++..
T Consensus 425 ~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 467 (650)
T TIGR03185 425 QLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTLDE 467 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334444444444444444444444444444444433
No 138
>PRK10698 phage shock protein PspA; Provisional
Probab=94.20 E-value=8.6 Score=41.09 Aligned_cols=76 Identities=20% Similarity=0.307 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH---------HHHHHHHHHHHHHHh
Q 001692 608 HAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESK--IV---------QLKTAMHRLEEKVSD 676 (1027)
Q Consensus 608 ~~~~~~L~~e~~kLe~~l~~l~~~l~elek~~~ele~~~~~~~~~l~~~~~~--~~---------~l~~~~~~Lee~l~~ 676 (1027)
..++..|..+....+..++.++..+..++.++.+++.....+..+...++.+ +. ..-.....++++|..
T Consensus 98 ~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a~~~~~~~~~~~~~~~a~~~f~rmE~ki~~ 177 (222)
T PRK10698 98 TDLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAASSSRDVRRQLDSGKLDEAMARFESFERRIDQ 177 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHH
Confidence 4556666777777777777777777777777777776666666665443332 21 222333446666666
Q ss_pred HHHHHHH
Q 001692 677 METENQI 683 (1027)
Q Consensus 677 le~e~~~ 683 (1027)
++.+.+.
T Consensus 178 ~Ea~aea 184 (222)
T PRK10698 178 MEAEAES 184 (222)
T ss_pred HHHHHhH
Confidence 6665554
No 139
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=94.14 E-value=9.5 Score=40.70 Aligned_cols=75 Identities=16% Similarity=0.279 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHh
Q 001692 608 HAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKI-----------VQLKTAMHRLEEKVSD 676 (1027)
Q Consensus 608 ~~~~~~L~~e~~kLe~~l~~l~~~l~elek~~~ele~~~~~~~~~l~~~~~~~-----------~~l~~~~~~Lee~l~~ 676 (1027)
+..+..|..+...++..++.++..+.+++.++.+++.....+..+...++... ........++++.+..
T Consensus 98 ~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~A~a~~~~~~~~~~~~~~~a~~~fer~e~ki~~ 177 (219)
T TIGR02977 98 QELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQAASSRLDVRRQLDSGRSDEAMARFEQYERRVDE 177 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHH
Confidence 55667777777777777777777777777777777776666665555444421 1333444455555555
Q ss_pred HHHHHH
Q 001692 677 METENQ 682 (1027)
Q Consensus 677 le~e~~ 682 (1027)
++.+.+
T Consensus 178 ~ea~ae 183 (219)
T TIGR02977 178 LEAQAE 183 (219)
T ss_pred HHHHHH
Confidence 554443
No 140
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=94.13 E-value=0.4 Score=50.15 Aligned_cols=79 Identities=23% Similarity=0.320 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001692 608 HAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1027)
Q Consensus 608 ~~~~~~L~~e~~kLe~~l~~l~~~l~elek~~~ele~~~~~~~~~l~~~~~~~~~l~~~~~~Lee~l~~le~e~~~L~q 686 (1027)
..++..+..+.......+.+++..+..++.++..++.+..+..+.++..+..+..++-+...+++++.+++.|+..|-+
T Consensus 101 ~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~ 179 (194)
T PF08614_consen 101 NDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVE 179 (194)
T ss_dssp -------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445555555555555555555555555555555555555666666777777778888888888888877654
No 141
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=94.12 E-value=0.44 Score=48.85 Aligned_cols=59 Identities=29% Similarity=0.315 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 001692 627 SLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILR 685 (1027)
Q Consensus 627 ~l~~~l~elek~~~ele~~~~~~~~~l~~~~~~~~~l~~~~~~Lee~l~~le~e~~~L~ 685 (1027)
+++.+++++.+...+|.+++++++.++++.++.+..++.++..|++.++++..+...|+
T Consensus 139 e~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~ 197 (290)
T COG4026 139 ELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLK 197 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHH
Confidence 33333333333333333333334444444444444444444444444444443333333
No 142
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=94.12 E-value=10 Score=45.01 Aligned_cols=22 Identities=27% Similarity=0.380 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 001692 519 AARETGALQAAKNKLEKQVEEL 540 (1027)
Q Consensus 519 ~a~~~~~L~~~k~~LE~kv~el 540 (1027)
.+.+++.+++....|++++.+.
T Consensus 233 i~~~ie~l~~~n~~l~e~i~e~ 254 (581)
T KOG0995|consen 233 IANEIEDLKKTNRELEEMINER 254 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666666666643
No 143
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.12 E-value=4.6 Score=50.60 Aligned_cols=75 Identities=17% Similarity=0.318 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001692 612 EELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQA----LEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1027)
Q Consensus 612 ~~L~~e~~kLe~~l~~l~~~l~elek~~~ele~~~~~~~~~l----~~~~~~~~~l~~~~~~Lee~l~~le~e~~~L~q 686 (1027)
.++.+|++.++.++..+...+++++.+.+..+...+.....- .--..+....++.+.+.-++|.++-.+++.++.
T Consensus 635 r~~~~EL~~~~~~l~~l~~si~~lk~k~~~Q~~~i~~~~~~~~~s~~L~~~Q~~~I~~iL~~~~~~I~~~v~~ik~i~~ 713 (717)
T PF10168_consen 635 REFKKELERMKDQLQDLKASIEQLKKKLDYQQRQIESQKSPKKKSIVLSESQKRTIKEILKQQGEEIDELVKQIKNIKK 713 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555556666666666666666555544333222111000 011334445555556666666666666655544
No 144
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=94.03 E-value=9.3 Score=43.14 Aligned_cols=26 Identities=19% Similarity=0.220 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001692 612 EELTSENEKLKTLVSSLEKKIDETEK 637 (1027)
Q Consensus 612 ~~L~~e~~kLe~~l~~l~~~l~elek 637 (1027)
..+..-+.+|+.+++.++..+...++
T Consensus 249 ~~~~~hi~~l~~EveRlrt~l~~Aqk 274 (552)
T KOG2129|consen 249 AAEKLHIDKLQAEVERLRTYLSRAQK 274 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444555555555555544443
No 145
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=93.99 E-value=17 Score=43.16 Aligned_cols=77 Identities=19% Similarity=0.253 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhHHHHHHHH
Q 001692 609 AVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAM----HRLEEKVSDMETENQIL 684 (1027)
Q Consensus 609 ~~~~~L~~e~~kLe~~l~~l~~~l~elek~~~ele~~~~~~~~~l~~~~~~~~~l~~~~----~~Lee~l~~le~e~~~L 684 (1027)
+.+.+...+....+..+.-|++.+..+...+.++....+....++..+..+.....++. ..-+.+++.|++++..+
T Consensus 425 el~~ei~~~~~~~~~~~~tLq~~~~~~~~~i~E~~~~l~~~~~el~~~~~~~~~~k~e~eee~~k~~~E~e~le~~l~~l 504 (581)
T KOG0995|consen 425 ELLDEISEELHEAENELETLQEHFSNKASTIEEKIQILGEIELELKKAESKYELKKEEAEEEWKKCRKEIEKLEEELLNL 504 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555556666666666666666666666666666555554333332 22333444455554444
Q ss_pred H
Q 001692 685 R 685 (1027)
Q Consensus 685 ~ 685 (1027)
.
T Consensus 505 ~ 505 (581)
T KOG0995|consen 505 K 505 (581)
T ss_pred H
Confidence 3
No 146
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=93.89 E-value=21 Score=43.72 Aligned_cols=38 Identities=16% Similarity=0.242 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001692 611 VEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEE 648 (1027)
Q Consensus 611 ~~~L~~e~~kLe~~l~~l~~~l~elek~~~ele~~~~~ 648 (1027)
+..++.++..++..+-+.+.+.+.+..++.+|++....
T Consensus 325 nmkltrqkadirc~LlEarrk~egfddk~~eLEKkrd~ 362 (1265)
T KOG0976|consen 325 NMKLTRQKADIRCALLEARRKAEGFDDKLNELEKKRDM 362 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHH
Confidence 33444444444444444444444444444444443333
No 147
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=93.88 E-value=14 Score=41.66 Aligned_cols=76 Identities=20% Similarity=0.245 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 001692 609 AVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQA----LEAESKIVQLKTAMHRLEEKVSDMETENQIL 684 (1027)
Q Consensus 609 ~~~~~L~~e~~kLe~~l~~l~~~l~elek~~~ele~~~~~~~~~l----~~~~~~~~~l~~~~~~Lee~l~~le~e~~~L 684 (1027)
..+..+..++..++..+..+...+..++.....|+....++.... ...+..+..++.++..+..++.....+...|
T Consensus 209 ~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l~~~~~~~~~ey~~L 288 (312)
T PF00038_consen 209 EELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEYQAEIAELEEELAELREEMARQLREYQEL 288 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHH
Confidence 334444445555555555555555555544444444444433332 3334445555555555555555444444443
No 148
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=93.82 E-value=7.6 Score=49.74 Aligned_cols=36 Identities=8% Similarity=0.190 Sum_probs=20.9
Q ss_pred CeEEEeeccceeEeccchhhhh-----cchhhHHHHHHHhh
Q 001692 183 DFTICHYAGDVTYQTELFLDKN-----KDYVVAEHQALLSA 218 (1027)
Q Consensus 183 ~F~i~H~ag~V~Y~~~~fl~kN-----~d~~~~~~~~ll~~ 218 (1027)
+..+.-|+..+.-+.+|-+.-+ .|+++|+++..+..
T Consensus 213 HikLADFGsClkm~~dG~V~s~~aVGTPDYISPEvLqs~~~ 253 (1317)
T KOG0612|consen 213 HIKLADFGSCLKMDADGTVRSSVAVGTPDYISPEVLQSQGD 253 (1317)
T ss_pred cEeeccchhHHhcCCCCcEEeccccCCCCccCHHHHHhhcC
Confidence 4444455444555555555444 47888888765554
No 149
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=93.80 E-value=13 Score=41.10 Aligned_cols=45 Identities=11% Similarity=0.168 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhHHHHHH
Q 001692 638 KFEETSKISEERLKQALEAESKI-VQLKTAMHRLEEKVSDMETENQ 682 (1027)
Q Consensus 638 ~~~ele~~~~~~~~~l~~~~~~~-~~l~~~~~~Lee~l~~le~e~~ 682 (1027)
.+..+.+++-+++..|+..++-+ +.|.+.+..|..+-..|+..+.
T Consensus 157 ~le~Lr~EKVdlEn~LE~EQE~lvN~L~Kqm~~l~~eKr~Lq~~l~ 202 (310)
T PF09755_consen 157 ELERLRREKVDLENTLEQEQEALVNRLWKQMDKLEAEKRRLQEKLE 202 (310)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 33344444444555554444433 4555555555555555555543
No 150
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=93.72 E-value=20 Score=43.10 Aligned_cols=13 Identities=54% Similarity=0.516 Sum_probs=9.4
Q ss_pred CcccccccccCCc
Q 001692 66 KSLIGVLDIYGFE 78 (1027)
Q Consensus 66 ~~~IgiLDi~GFE 78 (1027)
.+-+|+|||-|=+
T Consensus 9 ~sl~~~lDiq~~~ 21 (961)
T KOG4673|consen 9 VSLGGFLDIQGAV 21 (961)
T ss_pred hhhcccccccccc
Confidence 4567888888865
No 151
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=93.64 E-value=10 Score=51.57 Aligned_cols=19 Identities=11% Similarity=0.179 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 001692 655 EAESKIVQLKTAMHRLEEK 673 (1027)
Q Consensus 655 ~~~~~~~~l~~~~~~Lee~ 673 (1027)
+.+..+++.+..+.+.+..
T Consensus 365 ~~~~~~~~~~~r~~~~~~~ 383 (1353)
T TIGR02680 365 EERRRLDEEAGRLDDAERE 383 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 152
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=93.64 E-value=11 Score=44.39 Aligned_cols=24 Identities=4% Similarity=0.207 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHH
Q 001692 663 LKTAMHRLEEKVSDMETENQILRQ 686 (1027)
Q Consensus 663 l~~~~~~Lee~l~~le~e~~~L~q 686 (1027)
...++..++.++..++.++..++.
T Consensus 244 ~~~~l~~~~~~l~~~~~~l~~~~~ 267 (423)
T TIGR01843 244 VLEELTEAQARLAELRERLNKARD 267 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555555544
No 153
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=93.59 E-value=6.4 Score=43.23 Aligned_cols=80 Identities=24% Similarity=0.269 Sum_probs=52.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHH
Q 001692 607 DHAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEA-----------ESKIVQLKTAMHRLEEKVS 675 (1027)
Q Consensus 607 ~~~~~~~L~~e~~kLe~~l~~l~~~l~elek~~~ele~~~~~~~~~l~~~-----------~~~~~~l~~~~~~Lee~l~ 675 (1027)
-+.-+..+..++..|+-+++++.....|.+++.++|-++..+...-...+ ..-++.-+.-+..||.++.
T Consensus 132 LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~layqq~L~~eyQatf~eq~~ml~kRQ~yI~~LEsKVq 211 (401)
T PF06785_consen 132 LEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAEALAYQQELNDEYQATFVEQHSMLDKRQAYIGKLESKVQ 211 (401)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHH
Confidence 36667778888888888888888877777777777666555533322221 1123445566677777777
Q ss_pred hHHHHHHHHHH
Q 001692 676 DMETENQILRQ 686 (1027)
Q Consensus 676 ~le~e~~~L~q 686 (1027)
+|--|+..|-|
T Consensus 212 DLm~EirnLLQ 222 (401)
T PF06785_consen 212 DLMYEIRNLLQ 222 (401)
T ss_pred HHHHHHHHHHH
Confidence 77777776655
No 154
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.57 E-value=17 Score=41.72 Aligned_cols=74 Identities=14% Similarity=0.201 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcc
Q 001692 616 SENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQA--LEAESKIVQLKTAMHRLEEKVSDMETENQILRQQSL 689 (1027)
Q Consensus 616 ~e~~kLe~~l~~l~~~l~elek~~~ele~~~~~~~~~l--~~~~~~~~~l~~~~~~Lee~l~~le~e~~~L~qq~~ 689 (1027)
..+.++++.+...-+.++.-+.....|..+.+.+-... ......+.++..++..+++.|.+..+|-+.|+++..
T Consensus 345 ~~IqeleqdL~a~~eei~~~eel~~~Lrsele~lp~dv~rk~ytqrikEi~gniRKq~~DI~Kil~etreLqkq~n 420 (521)
T KOG1937|consen 345 RRIQELEQDLEAVDEEIESNEELAEKLRSELEKLPDDVQRKVYTQRIKEIDGNIRKQEQDIVKILEETRELQKQEN 420 (521)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555444444444444444433322 344556677777777777888888888888887653
No 155
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=93.55 E-value=7.3 Score=41.57 Aligned_cols=76 Identities=25% Similarity=0.375 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHH---------HHHHHHHHHHHHHHHh
Q 001692 608 HAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALE--AESKI---------VQLKTAMHRLEEKVSD 676 (1027)
Q Consensus 608 ~~~~~~L~~e~~kLe~~l~~l~~~l~elek~~~ele~~~~~~~~~l~~--~~~~~---------~~l~~~~~~Lee~l~~ 676 (1027)
+..+..+......+...++.++..+.+++.++.+++.....+...... ++.++ ........++++.+..
T Consensus 97 e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~~a~a~~~~~~~~~~~~~~~a~~~~er~e~ki~~ 176 (221)
T PF04012_consen 97 EEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKARENAAKAQKKVNEALASFSVSSAMDSFERMEEKIEE 176 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchHHHHHHHHHHHHH
Confidence 344455555555555555555555555555555555555544444322 22222 2333444555555555
Q ss_pred HHHHHHH
Q 001692 677 METENQI 683 (1027)
Q Consensus 677 le~e~~~ 683 (1027)
++.+...
T Consensus 177 ~ea~a~a 183 (221)
T PF04012_consen 177 MEARAEA 183 (221)
T ss_pred HHHHHHH
Confidence 5555443
No 156
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=93.50 E-value=5.4 Score=40.74 Aligned_cols=19 Identities=16% Similarity=0.377 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 001692 564 KLQSALQEMQLQFKESKEK 582 (1027)
Q Consensus 564 ~L~~~l~~le~~l~~~~~~ 582 (1027)
.+..++..++.+++.++++
T Consensus 8 ~lnrri~~leeele~aqEr 26 (205)
T KOG1003|consen 8 ALNRRIQLLEEELDRAQER 26 (205)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444333
No 157
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=93.44 E-value=16 Score=41.06 Aligned_cols=80 Identities=13% Similarity=0.254 Sum_probs=60.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001692 607 DHAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1027)
Q Consensus 607 ~~~~~~~L~~e~~kLe~~l~~l~~~l~elek~~~ele~~~~~~~~~l~~~~~~~~~l~~~~~~Lee~l~~le~e~~~L~q 686 (1027)
-.++...++..+.+--.....++..++.+-+++..++++...+..+-+.....+.++-++...+..++..++..+..|+.
T Consensus 221 Y~~Kf~efq~tL~kSNe~F~tfk~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~~m~eer~~~~~~~~~~~~k~~kLe~ 300 (309)
T PF09728_consen 221 YSEKFEEFQDTLNKSNEVFETFKKEMEKMSKKIKKLEKENQTWKSKWEKSNKALIEMAEERQKLEKELEKLKKKIEKLEK 300 (309)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777777777778888888888888888888888887777777777777777777777777776665553
No 158
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=93.40 E-value=3.7 Score=42.67 Aligned_cols=55 Identities=27% Similarity=0.469 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 001692 625 VSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMET 679 (1027)
Q Consensus 625 l~~l~~~l~elek~~~ele~~~~~~~~~l~~~~~~~~~l~~~~~~Lee~l~~le~ 679 (1027)
++.++....++.++..++.+...+.....+.....+.+++....++++.+.++++
T Consensus 132 l~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 186 (191)
T PF04156_consen 132 LDSLDESIKELEKEIRELQKELQDSREEVQELRSQLERLQENLQQLEEKIQELQE 186 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333334444444444444444443
No 159
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=93.24 E-value=17 Score=40.69 Aligned_cols=29 Identities=24% Similarity=0.392 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHhc
Q 001692 660 IVQLKTAMHRLEEKVSDMETENQILRQQS 688 (1027)
Q Consensus 660 ~~~l~~~~~~Lee~l~~le~e~~~L~qq~ 688 (1027)
++.|-.++.-|.+.+..+++|...+++..
T Consensus 191 IDaLi~ENRyL~erl~q~qeE~~l~k~~i 219 (319)
T PF09789_consen 191 IDALIMENRYLKERLKQLQEEKELLKQTI 219 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666668888888888887777643
No 160
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=93.22 E-value=0.025 Score=72.21 Aligned_cols=165 Identities=21% Similarity=0.276 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHH
Q 001692 519 AARETGALQAAKNKLEKQVEELTWRLQLEKRMRVDMEEAKTQENAKLQSALQEMQLQFKESKEK----------LMKEIE 588 (1027)
Q Consensus 519 ~a~~~~~L~~~k~~LE~kv~el~~rl~~e~~~~~ele~~~~~e~~~L~~~l~~le~~l~~~~~~----------l~~e~~ 588 (1027)
+......+.+...+|+.+|.+|+..|+.|+..+.-.+ ....+|..++++|...+++.... ...++.
T Consensus 30 e~~~~~~l~k~~kelq~~i~el~eeLe~Er~~R~kae----k~r~dL~~ELe~l~~~Lee~~~~t~aq~E~~kkrE~El~ 105 (859)
T PF01576_consen 30 EQALRAQLQKKIKELQARIEELEEELESERQARAKAE----KQRRDLSEELEELKERLEEAGGATQAQIELNKKREAELA 105 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhhCcHHhhHHHHHHHHHHHH
Confidence 3344556666777777788888777776666554222 23344555555555444433211 112333
Q ss_pred HHHHHhhccc--------c-----------ccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001692 589 VAKKEAEKVP--------V-----------VQEVPVIDHAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEER 649 (1027)
Q Consensus 589 ~~~~~~ee~~--------~-----------~~e~~~~~~~~~~~L~~e~~kLe~~l~~l~~~l~elek~~~ele~~~~~~ 649 (1027)
.+++.+++.. . +.+...........+.+++..|+.+++++...++.+.+...+.++....+
T Consensus 106 ~Lrr~LEe~~~~~e~~~~~lrkkh~~~~~eL~eqle~lqk~k~~lEK~k~~l~~e~~dL~~~l~~~~k~k~~~Ek~~K~l 185 (859)
T PF01576_consen 106 KLRRDLEEANLQHEATLAELRKKHQDAVAELNEQLEQLQKQKAKLEKEKSQLEAELDDLQAQLDSLQKAKQEAEKKRKQL 185 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHhhH
Confidence 3333333210 0 00000001122344566666666777777777777777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001692 650 LKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1027)
Q Consensus 650 ~~~l~~~~~~~~~l~~~~~~Lee~l~~le~e~~~L~qq 687 (1027)
+..+.+++.++++.+..+.++.....+|..|+..|..+
T Consensus 186 E~qL~El~~klee~er~~~el~~~k~kL~~E~~eL~~q 223 (859)
T PF01576_consen 186 EAQLNELQAKLEESERQRNELTEQKAKLQSENSELTRQ 223 (859)
T ss_dssp --------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777777666666666666655543
No 161
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=93.13 E-value=3.5 Score=49.01 Aligned_cols=79 Identities=22% Similarity=0.388 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 001692 608 HAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEE---RLKQALEAESKIVQLKTAMHRLEEKVSDMETENQIL 684 (1027)
Q Consensus 608 ~~~~~~L~~e~~kLe~~l~~l~~~l~elek~~~ele~~~~~---~~~~l~~~~~~~~~l~~~~~~Lee~l~~le~e~~~L 684 (1027)
+.+++.|+.++..|+..+++++..++.++.++..+.++.+. ...++...+..+..|+.++.+-...++.|+.++..+
T Consensus 428 ~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l 507 (652)
T COG2433 428 EETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELERKLAEL 507 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666666666666666665554432 223345566777777777777777777777777777
Q ss_pred HH
Q 001692 685 RQ 686 (1027)
Q Consensus 685 ~q 686 (1027)
++
T Consensus 508 ~k 509 (652)
T COG2433 508 RK 509 (652)
T ss_pred HH
Confidence 64
No 162
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=92.98 E-value=29 Score=42.69 Aligned_cols=15 Identities=13% Similarity=0.122 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHHH
Q 001692 568 ALQEMQLQFKESKEK 582 (1027)
Q Consensus 568 ~l~~le~~l~~~~~~ 582 (1027)
.++.++.+++.+-..
T Consensus 283 ~~~~i~~~Id~Lyd~ 297 (569)
T PRK04778 283 KNEEIQERIDQLYDI 297 (569)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 163
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=92.96 E-value=16 Score=45.76 Aligned_cols=21 Identities=24% Similarity=0.333 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 001692 528 AAKNKLEKQVEELTWRLQLEK 548 (1027)
Q Consensus 528 ~~k~~LE~kv~el~~rl~~e~ 548 (1027)
+.+..||-++.+++.+++-.+
T Consensus 300 k~kt~lel~~kdlq~~i~~n~ 320 (1200)
T KOG0964|consen 300 KKKTKLELKIKDLQDQITGNE 320 (1200)
T ss_pred HHhhhhhhhhHHHHHHhhhhh
Confidence 334556666667766666433
No 164
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=92.83 E-value=14 Score=46.36 Aligned_cols=69 Identities=17% Similarity=0.287 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhc
Q 001692 620 KLKTLVSSLEKKIDETEKKFEET--SKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQS 688 (1027)
Q Consensus 620 kLe~~l~~l~~~l~elek~~~el--e~~~~~~~~~l~~~~~~~~~l~~~~~~Lee~l~~le~e~~~L~qq~ 688 (1027)
++..++..++..++++++++... +....++..+++..+.++..++.++..+++++..+++++..++.+.
T Consensus 395 ~~~~~~~~~e~el~~l~~~l~~~~~~e~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 465 (650)
T TIGR03185 395 QLLKELRELEEELAEVDKKISTIPSEEQIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTL 465 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444433321 2344445555555666666666666666666666666666555543
No 165
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=92.79 E-value=12 Score=46.88 Aligned_cols=32 Identities=16% Similarity=0.214 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001692 655 EAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1027)
Q Consensus 655 ~~~~~~~~l~~~~~~Lee~l~~le~e~~~L~q 686 (1027)
+++.+-..+=.+-+.|+..+.++++++...++
T Consensus 464 el~~~Rk~lWREE~~l~~~i~~~~~dl~~~~~ 495 (1200)
T KOG0964|consen 464 ELQDKRKELWREEKKLRSLIANLEEDLSRAEK 495 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444555566666666655444
No 166
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=92.58 E-value=27 Score=43.99 Aligned_cols=79 Identities=22% Similarity=0.252 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHH---HHHHHHHHHH--HHHHhHHHH
Q 001692 608 HAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEA--ESKIV---QLKTAMHRLE--EKVSDMETE 680 (1027)
Q Consensus 608 ~~~~~~L~~e~~kLe~~l~~l~~~l~elek~~~ele~~~~~~~~~l~~~--~~~~~---~l~~~~~~Le--e~l~~le~e 680 (1027)
...+..|...+...+.++.++..+++..+++...|+-+..-+.++|+-. +..+. --...++.|+ .+|.+|+.|
T Consensus 119 ~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~~keleir~~E~~~~~~~ae~a~kqhle~vkkiakLEaE 198 (769)
T PF05911_consen 119 EKLIAELSEEKSQAEAEIEDLMARLESTEKENSSLKYELHVLSKELEIRNEEREYSRRAAEAASKQHLESVKKIAKLEAE 198 (769)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678889999999999999999999999999999999988888887542 22221 1122334444 578899999
Q ss_pred HHHHHH
Q 001692 681 NQILRQ 686 (1027)
Q Consensus 681 ~~~L~q 686 (1027)
...||-
T Consensus 199 C~rLr~ 204 (769)
T PF05911_consen 199 CQRLRA 204 (769)
T ss_pred HHHHHH
Confidence 998886
No 167
>PRK01156 chromosome segregation protein; Provisional
Probab=92.56 E-value=44 Score=43.68 Aligned_cols=16 Identities=25% Similarity=0.287 Sum_probs=12.6
Q ss_pred CCCCCchhhHHhhchh
Q 001692 996 ECCTFSNGEYVKAGLA 1011 (1027)
Q Consensus 996 ~~cs~s~g~qIr~nls 1011 (1027)
+....|.|.+.+..|.
T Consensus 798 ~~~~lS~G~~~~~~la 813 (895)
T PRK01156 798 GIDSLSGGEKTAVAFA 813 (895)
T ss_pred ccccCCHhHHHHHHHH
Confidence 4677889998888765
No 168
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=92.28 E-value=29 Score=41.05 Aligned_cols=12 Identities=17% Similarity=0.451 Sum_probs=4.5
Q ss_pred HHHHHHhHHHHH
Q 001692 670 LEEKVSDMETEN 681 (1027)
Q Consensus 670 Lee~l~~le~e~ 681 (1027)
|.++|..|.+.+
T Consensus 170 L~~qi~~L~~~n 181 (475)
T PRK10361 170 LAHEIRNLQQLN 181 (475)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 169
>PRK10884 SH3 domain-containing protein; Provisional
Probab=92.21 E-value=1.4 Score=46.41 Aligned_cols=69 Identities=13% Similarity=0.213 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001692 608 HAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1027)
Q Consensus 608 ~~~~~~L~~e~~kLe~~l~~l~~~l~elek~~~ele~~~~~~~~~l~~~~~~~~~l~~~~~~Lee~l~~le~e~~~L~q 686 (1027)
.+++..+++++++++.++++...... ....++..++.+....+.+|+++.++|++++..++.++..++.
T Consensus 92 ~~rlp~le~el~~l~~~l~~~~~~~~----------~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~ 160 (206)
T PRK10884 92 RTRVPDLENQVKTLTDKLNNIDNTWN----------QRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANL 160 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555544443322 2222333333333344444444444444444444444444433
No 170
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=92.17 E-value=2.1 Score=48.21 Aligned_cols=31 Identities=10% Similarity=0.221 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001692 656 AESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1027)
Q Consensus 656 ~~~~~~~l~~~~~~Lee~l~~le~e~~~L~q 686 (1027)
.+..+.+++++...++.++.....++..|++
T Consensus 104 ~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~k 134 (314)
T PF04111_consen 104 LQLELIEFQEERDSLKNQYEYASNQLDRLRK 134 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334444444455555555555555555543
No 171
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=92.13 E-value=15 Score=37.64 Aligned_cols=79 Identities=22% Similarity=0.287 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhc
Q 001692 610 VVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQS 688 (1027)
Q Consensus 610 ~~~~L~~e~~kLe~~l~~l~~~l~elek~~~ele~~~~~~~~~l~~~~~~~~~l~~~~~~Lee~l~~le~e~~~L~qq~ 688 (1027)
++++-+.++.+|+......-..+...++++..+..+...+..++.+.+..+..+.+++.....+..++...+..++++.
T Consensus 57 kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~~~ 135 (177)
T PF13870_consen 57 KIEERNKELLKLKKKIGKTVQILTHVKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKLRQQG 135 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3333444444444444444445555556666666666666666666666666677777777777777777777776644
No 172
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=92.11 E-value=2.3 Score=47.89 Aligned_cols=83 Identities=20% Similarity=0.211 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhc
Q 001692 609 AVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQS 688 (1027)
Q Consensus 609 ~~~~~L~~e~~kLe~~l~~l~~~l~elek~~~ele~~~~~~~~~l~~~~~~~~~l~~~~~~Lee~l~~le~e~~~L~qq~ 688 (1027)
++++.+.++...+.+++.+++...+++.+++.+++.+..++..+-...-.....++-+..+++++...++........+.
T Consensus 50 ~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L 129 (314)
T PF04111_consen 50 EELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQL 129 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555555555555555555444444555556666666777777777777776666655
Q ss_pred ccc
Q 001692 689 LLS 691 (1027)
Q Consensus 689 ~~~ 691 (1027)
...
T Consensus 130 ~~L 132 (314)
T PF04111_consen 130 DRL 132 (314)
T ss_dssp HCH
T ss_pred HHH
Confidence 433
No 173
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=92.08 E-value=20 Score=44.57 Aligned_cols=28 Identities=14% Similarity=0.188 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 001692 656 AESKIVQLKTAMHRLEEKVSDMETENQI 683 (1027)
Q Consensus 656 ~~~~~~~l~~~~~~Lee~l~~le~e~~~ 683 (1027)
++.++++.=+.++.=+++-..|+.|+..
T Consensus 154 ae~qleEALesl~~EReqk~~LrkEL~~ 181 (717)
T PF09730_consen 154 AEKQLEEALESLKSEREQKNALRKELDQ 181 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334443333333334444445555544
No 174
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=92.08 E-value=38 Score=41.86 Aligned_cols=81 Identities=20% Similarity=0.224 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001692 608 HAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1027)
Q Consensus 608 ~~~~~~L~~e~~kLe~~l~~l~~~l~elek~~~ele~~~~~~~~~l~~~~~~~~~l~~~~~~Lee~l~~le~e~~~L~qq 687 (1027)
+++...++.....+..++.-+...++..++...++.+..+.+..+++..+.++.+++....+++.++..+......++..
T Consensus 530 eeq~~~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE 609 (698)
T KOG0978|consen 530 EEQERGLTSNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEE 609 (698)
T ss_pred HHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444455555555555555555555555555555555555555555555555555555555555554444443
Q ss_pred c
Q 001692 688 S 688 (1027)
Q Consensus 688 ~ 688 (1027)
.
T Consensus 610 ~ 610 (698)
T KOG0978|consen 610 L 610 (698)
T ss_pred H
Confidence 3
No 175
>PRK10884 SH3 domain-containing protein; Provisional
Probab=92.02 E-value=2.1 Score=45.05 Aligned_cols=34 Identities=12% Similarity=0.277 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001692 627 SLEKKIDETEKKFEETSKISEERLKQALEAESKI 660 (1027)
Q Consensus 627 ~l~~~l~elek~~~ele~~~~~~~~~l~~~~~~~ 660 (1027)
+++.++.+.+..+.+|+.++.++..++..++.++
T Consensus 122 ~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~ 155 (206)
T PRK10884 122 EMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKV 155 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444433333333
No 176
>PF13514 AAA_27: AAA domain
Probab=91.95 E-value=58 Score=43.67 Aligned_cols=23 Identities=13% Similarity=0.300 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHH
Q 001692 34 VSRDALAKIVYSRLFDWLVEKIN 56 (1027)
Q Consensus 34 ~~rdalak~lY~~LF~wlV~~iN 56 (1027)
..-..+-+.+|..+|.+=...+.
T Consensus 79 ~~Lgg~dr~~f~~iF~~d~~~L~ 101 (1111)
T PF13514_consen 79 ALLGGLDRETFEAIFSFDHEELR 101 (1111)
T ss_pred HHHcCCCHHHHHHHHcCCHHHHH
Confidence 33455566777777766554443
No 177
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=91.77 E-value=6.2 Score=42.87 Aligned_cols=48 Identities=25% Similarity=0.307 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 001692 634 ETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETEN 681 (1027)
Q Consensus 634 elek~~~ele~~~~~~~~~l~~~~~~~~~l~~~~~~Lee~l~~le~e~ 681 (1027)
.++.......+++..+..++...+..+..+......-+.+...++.++
T Consensus 65 rL~~~~~~~~eEk~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el 112 (246)
T PF00769_consen 65 RLEEEAEMQEEEKEQLEQELREAEAEIARLEEESERKEEEAEELQEEL 112 (246)
T ss_dssp HHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333334444444444444433333333333333333
No 178
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=91.72 E-value=13 Score=41.48 Aligned_cols=72 Identities=11% Similarity=0.254 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 001692 612 EELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQI 683 (1027)
Q Consensus 612 ~~L~~e~~kLe~~l~~l~~~l~elek~~~ele~~~~~~~~~l~~~~~~~~~l~~~~~~Lee~l~~le~e~~~ 683 (1027)
..+...+..++..+++.++++.+++..+..............+.....+.++..++...+..+..+...+..
T Consensus 73 ~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~ 144 (302)
T PF10186_consen 73 ERLRERIERLRKRIEQKRERLEELRESLEQRRSRLSASQDLVESRQEQLEELQNELEERKQRLSQLQSQLAR 144 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444433333333332222222233333334444444444444444444433
No 179
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=91.65 E-value=3.8 Score=45.62 Aligned_cols=70 Identities=17% Similarity=0.276 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 001692 612 EELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETEN 681 (1027)
Q Consensus 612 ~~L~~e~~kLe~~l~~l~~~l~elek~~~ele~~~~~~~~~l~~~~~~~~~l~~~~~~Lee~l~~le~e~ 681 (1027)
..|..++..|.-+++-|+.+++++++.+.++.++.++..++++.....++.++.++..|+++|...++-+
T Consensus 101 aQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L~~rdeli 170 (302)
T PF09738_consen 101 AQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQLKQRDELI 170 (302)
T ss_pred hhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466788888999999999999999999999999988888888888888888888888888876665555
No 180
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=91.65 E-value=4.1 Score=48.11 Aligned_cols=25 Identities=28% Similarity=0.264 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHh
Q 001692 663 LKTAMHRLEEKVSDMETENQILRQQ 687 (1027)
Q Consensus 663 l~~~~~~Lee~l~~le~e~~~L~qq 687 (1027)
-..++..|+|+++..+.|...|..+
T Consensus 236 tk~e~a~L~Eq~~eK~~e~~rl~~~ 260 (861)
T KOG1899|consen 236 TKGEMAPLREQRSEKNDEEMRLLRT 260 (861)
T ss_pred ccchhhhHHHHHhhhhhHHHHHHHH
Confidence 3445566777777777776655443
No 181
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.62 E-value=37 Score=41.97 Aligned_cols=81 Identities=12% Similarity=0.146 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001692 608 HAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEE--------------RLKQALEAESKIVQLKTAMHRLEEK 673 (1027)
Q Consensus 608 ~~~~~~L~~e~~kLe~~l~~l~~~l~elek~~~ele~~~~~--------------~~~~l~~~~~~~~~l~~~~~~Lee~ 673 (1027)
++.+.++.++.......+.+++..+..++.+.+.+-..... +..+....+.++..++++.+.....
T Consensus 791 qeqv~El~~~l~e~~~~l~~~q~e~~~~keq~~t~~~~tsa~a~~le~m~~~~~~la~e~~~ieq~ls~l~~~~k~~~nl 870 (970)
T KOG0946|consen 791 QEQVIELLKNLSEESTRLQELQSELTQLKEQIQTLLERTSAAADSLESMGSTEKNLANELKLIEQKLSNLQEKIKFGNNL 870 (970)
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhccccchhhHHHHHHHHHHHHHHHhhhhhhH
Confidence 34444444444444555555555555555444444333332 2233334455555566566555566
Q ss_pred HHhHHHHHHHHHHhc
Q 001692 674 VSDMETENQILRQQS 688 (1027)
Q Consensus 674 l~~le~e~~~L~qq~ 688 (1027)
+..+-+++..|..|+
T Consensus 871 i~~ltEk~~sl~~qa 885 (970)
T KOG0946|consen 871 IKELTEKISSLEAQA 885 (970)
T ss_pred HHHHhhhhhhHHHhh
Confidence 666666655555444
No 182
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=91.62 E-value=6.3 Score=45.13 Aligned_cols=14 Identities=21% Similarity=0.520 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHhH
Q 001692 664 KTAMHRLEEKVSDM 677 (1027)
Q Consensus 664 ~~~~~~Lee~l~~l 677 (1027)
++++.+|+|+|..|
T Consensus 434 d~~I~dLqEQlrDl 447 (493)
T KOG0804|consen 434 DEKITDLQEQLRDL 447 (493)
T ss_pred HHHHHHHHHHHHhH
Confidence 33334444444433
No 183
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=91.60 E-value=16 Score=42.03 Aligned_cols=25 Identities=32% Similarity=0.425 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001692 521 RETGALQAAKNKLEKQVEELTWRLQ 545 (1027)
Q Consensus 521 ~~~~~L~~~k~~LE~kv~el~~rl~ 545 (1027)
-.+..|+-.+.-||++|+||+....
T Consensus 331 ~~IqdLq~sN~yLe~kvkeLQ~k~~ 355 (527)
T PF15066_consen 331 NRIQDLQCSNLYLEKKVKELQMKIT 355 (527)
T ss_pred HHHHHhhhccHHHHHHHHHHHHHhh
Confidence 3455566666678888888875544
No 184
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=91.55 E-value=69 Score=43.77 Aligned_cols=20 Identities=5% Similarity=-0.130 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001692 428 RIQRDLRMYLAKKAYKDMCF 447 (1027)
Q Consensus 428 ~IQ~~~R~~~~rk~y~~~r~ 447 (1027)
+-.+-|-|..+|..++..+-
T Consensus 725 k~~a~~IG~~aR~~~R~~ri 744 (1353)
T TIGR02680 725 KPAAEYIGAAARERARLRRI 744 (1353)
T ss_pred CcchhHhhHHHHHHHHHHHH
Confidence 44556778888888775543
No 185
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=91.50 E-value=20 Score=45.07 Aligned_cols=75 Identities=17% Similarity=0.163 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 001692 608 HAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQ 682 (1027)
Q Consensus 608 ~~~~~~L~~e~~kLe~~l~~l~~~l~elek~~~ele~~~~~~~~~l~~~~~~~~~l~~~~~~Lee~l~~le~e~~ 682 (1027)
+.++.++.+++.++..+...+-..+.+-.+.+.++.+.+...+.++..+..+++..++++..|+-++..+.+|++
T Consensus 91 e~~l~e~~~~l~~~~~e~~~l~~~l~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~~kele 165 (769)
T PF05911_consen 91 EAKLAELSKRLAESAAENSALSKALQEKEKLIAELSEEKSQAEAEIEDLMARLESTEKENSSLKYELHVLSKELE 165 (769)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555556666666666666666666666777777777777777777777777777777777777777776664
No 186
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=91.50 E-value=49 Score=42.09 Aligned_cols=25 Identities=32% Similarity=0.383 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001692 521 RETGALQAAKNKLEKQVEELTWRLQ 545 (1027)
Q Consensus 521 ~~~~~L~~~k~~LE~kv~el~~rl~ 545 (1027)
+...+|+.....+++.|+...++..
T Consensus 202 ~~l~~L~~~~~~l~kdVE~~rer~~ 226 (1072)
T KOG0979|consen 202 EKLNRLEDEIDKLEKDVERVRERER 226 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555544433
No 187
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=91.49 E-value=22 Score=41.78 Aligned_cols=71 Identities=14% Similarity=0.214 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 001692 613 ELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQ-ALEAESKIVQLKTAMHRLEEKVSDMETENQI 683 (1027)
Q Consensus 613 ~L~~e~~kLe~~l~~l~~~l~elek~~~ele~~~~~~~~~-l~~~~~~~~~l~~~~~~Lee~l~~le~e~~~ 683 (1027)
....+...++.++.+++..+.+++..+.+++......... ..+....+..++.++..++.++..++..+..
T Consensus 200 ~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~ 271 (423)
T TIGR01843 200 ELERERAEAQGELGRLEAELEVLKRQIDELQLERQQIEQTFREEVLEELTEAQARLAELRERLNKARDRLQR 271 (423)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344444444444444444444444444444333332222 2344455666667777777777766666653
No 188
>PLN02939 transferase, transferring glycosyl groups
Probab=91.44 E-value=18 Score=46.46 Aligned_cols=61 Identities=18% Similarity=0.206 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001692 521 RETGALQAAKNKLEKQVEELTWRLQLEKRMRVDMEEAKTQENAKLQSALQEMQLQFKESKEK 582 (1027)
Q Consensus 521 ~~~~~L~~~k~~LE~kv~el~~rl~~e~~~~~ele~~~~~e~~~L~~~l~~le~~l~~~~~~ 582 (1027)
.++..|++.+.-|.+.+.-|...+.+-.+. .+.-....+|..-|+..+.+|+..+...++.
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (977)
T PLN02939 226 KELDVLKEENMLLKDDIQFLKAELIEVAET-EERVFKLEKERSLLDASLRELESKFIVAQED 286 (977)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 345555555555555555555444421110 0000123345555666666666666555443
No 189
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=91.41 E-value=1.2 Score=45.80 Aligned_cols=74 Identities=22% Similarity=0.234 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 001692 608 HAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETEN 681 (1027)
Q Consensus 608 ~~~~~~L~~e~~kLe~~l~~l~~~l~elek~~~ele~~~~~~~~~l~~~~~~~~~l~~~~~~Lee~l~~le~e~ 681 (1027)
.++.+++.+++..|-.++++++.++++....+..++.++..+...++.+..++.+|++...+|+..+...+.+.
T Consensus 141 kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~~~El~e~~~ 214 (290)
T COG4026 141 KEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPGVELPEEEL 214 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhcccccchHHHH
Confidence 45566666666666666666666666666666666666665555555555555555555555555555444443
No 190
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=91.39 E-value=42 Score=41.00 Aligned_cols=25 Identities=16% Similarity=0.311 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHhc
Q 001692 664 KTAMHRLEEKVSDMETENQILRQQS 688 (1027)
Q Consensus 664 ~~~~~~Lee~l~~le~e~~~L~qq~ 688 (1027)
+.+...|.+.+..|+++-..|...+
T Consensus 241 e~Er~~L~~tVq~L~edR~~L~~T~ 265 (739)
T PF07111_consen 241 EPEREELLETVQHLQEDRDALQATA 265 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555566666666665555543
No 191
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=91.37 E-value=40 Score=40.65 Aligned_cols=7 Identities=29% Similarity=0.363 Sum_probs=2.6
Q ss_pred HhhhHHH
Q 001692 981 SYINVQL 987 (1027)
Q Consensus 981 ~~in~~l 987 (1027)
|.|+..+
T Consensus 602 y~i~lh~ 608 (629)
T KOG0963|consen 602 YTIGLHL 608 (629)
T ss_pred HHHHHHH
Confidence 3333333
No 192
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=91.37 E-value=5.3 Score=46.29 Aligned_cols=74 Identities=18% Similarity=0.110 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 001692 612 EELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILR 685 (1027)
Q Consensus 612 ~~L~~e~~kLe~~l~~l~~~l~elek~~~ele~~~~~~~~~l~~~~~~~~~l~~~~~~Lee~l~~le~e~~~L~ 685 (1027)
+.+.+++.....++..|...+.++++++..+.-+++++..-|......-.+++.+..+++++-.....+.+..+
T Consensus 222 ~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDkyAE~m~~~~Eae 295 (596)
T KOG4360|consen 222 QSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDKYAECMQMLHEAE 295 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444444444444444444444444444444444444444333
No 193
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.32 E-value=29 Score=40.82 Aligned_cols=19 Identities=5% Similarity=-0.186 Sum_probs=9.8
Q ss_pred CCcccchhhhhHHHHHHHH
Q 001692 811 DNDHMAYWLSNTSTLLFLL 829 (1027)
Q Consensus 811 ~~~~lafWLsN~~~Ll~~l 829 (1027)
.+...+==|++.+.+.|..
T Consensus 486 ~lv~~SdeLaqlyh~vc~~ 504 (772)
T KOG0999|consen 486 ELVTFSDELAQLYHHVCEC 504 (772)
T ss_pred hHhhhhHHHHHHHHHHHHH
Confidence 3444455566655555443
No 194
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=91.16 E-value=35 Score=39.60 Aligned_cols=31 Identities=16% Similarity=0.107 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001692 641 ETSKISEERLKQALEAESKIVQLKTAMHRLE 671 (1027)
Q Consensus 641 ele~~~~~~~~~l~~~~~~~~~l~~~~~~Le 671 (1027)
+++.++.....+++++..+-..|...+.+++
T Consensus 214 ~l~~~l~~~q~~l~eL~~~~~~L~~~Ias~e 244 (420)
T COG4942 214 QLNSELSADQKKLEELRANESRLKNEIASAE 244 (420)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3333333333333333333333333343333
No 195
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=91.15 E-value=3.4 Score=35.37 Aligned_cols=65 Identities=22% Similarity=0.221 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 001692 614 LTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILR 685 (1027)
Q Consensus 614 L~~e~~kLe~~l~~l~~~l~elek~~~ele~~~~~~~~~l~~~~~~~~~l~~~~~~Lee~l~~le~e~~~L~ 685 (1027)
|+.++..|+..++.+..+++-.+.....+..+.......+..+- .+..+|.+++..|+.|++..+
T Consensus 3 Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~-------~e~~~Lk~E~e~L~~el~~~r 67 (69)
T PF14197_consen 3 LEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAY-------EENNKLKEENEALRKELEELR 67 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhh
Confidence 44555556666666655555555555555555554444444444 444444455555555554443
No 196
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=91.14 E-value=22 Score=37.34 Aligned_cols=31 Identities=29% Similarity=0.363 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 001692 655 EAESKIVQLKTAMHRLEEKVSDMETENQILR 685 (1027)
Q Consensus 655 ~~~~~~~~l~~~~~~Lee~l~~le~e~~~L~ 685 (1027)
..+.++..++-+-..|+..+.+++.|-..|.
T Consensus 97 ~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~ 127 (201)
T PF13851_consen 97 ELEKELKDLKWEHEVLEQRFEKLEQERDELY 127 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444433
No 197
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=91.09 E-value=57 Score=41.93 Aligned_cols=27 Identities=22% Similarity=0.225 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001692 660 IVQLKTAMHRLEEKVSDMETENQILRQ 686 (1027)
Q Consensus 660 ~~~l~~~~~~Lee~l~~le~e~~~L~q 686 (1027)
+++|+.+..+-+..|..+..++..|+.
T Consensus 1712 l~dLe~~y~~~~~~L~~~~aeL~~Le~ 1738 (1758)
T KOG0994|consen 1712 LKDLELEYLRNEQALEDKAAELAGLEK 1738 (1758)
T ss_pred HHHHHHHHhhhhHHHHHHHHHhhhHHH
Confidence 334444444455555555555555554
No 198
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=91.02 E-value=3 Score=43.57 Aligned_cols=60 Identities=22% Similarity=0.189 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001692 609 AVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMH 668 (1027)
Q Consensus 609 ~~~~~L~~e~~kLe~~l~~l~~~l~elek~~~ele~~~~~~~~~l~~~~~~~~~l~~~~~ 668 (1027)
..+..|..++..|+..+.+++..+.+..+.+..+..+...+.-++..+++++..++.+..
T Consensus 116 ~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~ 175 (194)
T PF08614_consen 116 RRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENR 175 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444443333333333333333333333
No 199
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=90.89 E-value=17 Score=35.47 Aligned_cols=65 Identities=20% Similarity=0.306 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001692 612 EELTSENEKLKTLVSSLEKKIDETEKKFEE----TSKISEERLKQALEAESKIVQLKTAMHRLEEKVSD 676 (1027)
Q Consensus 612 ~~L~~e~~kLe~~l~~l~~~l~elek~~~e----le~~~~~~~~~l~~~~~~~~~l~~~~~~Lee~l~~ 676 (1027)
..+..+...++..+..++...+..+..+.. -+.++..+..++.+++.++++|..++.-|-++|..
T Consensus 62 ~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE~ 130 (132)
T PF07926_consen 62 QQLREELQELQQEINELKAEAESAKAELEESEASWEEQKEQLEKELSELEQRIEDLNEQNKLLHDQLES 130 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334444444444444444444433333322 23344455566666667777777776666666543
No 200
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=90.88 E-value=80 Score=43.27 Aligned_cols=67 Identities=21% Similarity=0.292 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001692 525 ALQAAKNKLEKQVEELTWRLQLEKRMRVDMEEAKTQENAKLQSALQEMQLQFKESKEKLMKEIEVAK 591 (1027)
Q Consensus 525 ~L~~~k~~LE~kv~el~~rl~~e~~~~~ele~~~~~e~~~L~~~l~~le~~l~~~~~~l~~e~~~~~ 591 (1027)
+|......|..+...++..+..-+-....++........++..++.+|+..+..+...++.+....+
T Consensus 763 rL~~e~~~l~~e~~~L~~~l~~lQt~~~~~e~s~~~~k~~~e~~i~eL~~el~~lk~klq~~~~~~r 829 (1822)
T KOG4674|consen 763 RLSQELEKLSAEQESLQLLLDNLQTQKNELEESEMATKDKCESRIKELERELQKLKKKLQEKSSDLR 829 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455556666666655554444444445555556666667777777777766666555444443
No 201
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=90.75 E-value=24 Score=44.68 Aligned_cols=29 Identities=24% Similarity=0.381 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001692 608 HAVVEELTSENEKLKTLVSSLEKKIDETE 636 (1027)
Q Consensus 608 ~~~~~~L~~e~~kLe~~l~~l~~~l~ele 636 (1027)
+++..+|+.++.++...+......+.+..
T Consensus 275 ~~~~eeLe~~~~et~~~~s~~~~~~~e~~ 303 (1072)
T KOG0979|consen 275 EDKKEELESEKKETRSKISQKQRELNEAL 303 (1072)
T ss_pred hhhhhhHHhHHHhHHHHHHHHHHHHHHHH
Confidence 34444555555555555554444444433
No 202
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=90.50 E-value=40 Score=39.23 Aligned_cols=47 Identities=17% Similarity=0.196 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001692 608 HAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQAL 654 (1027)
Q Consensus 608 ~~~~~~L~~e~~kLe~~l~~l~~~l~elek~~~ele~~~~~~~~~l~ 654 (1027)
..++.+....+.+|+.++......+.++++.+..|++...+..+-++
T Consensus 250 ~~Ri~et~~ak~~Le~ql~~~~~ei~~~e~~i~~L~~ai~~k~~~lk 296 (384)
T PF03148_consen 250 RKRIHETQEAKNELEWQLKKTLQEIAEMEKNIEDLEKAIRDKEGPLK 296 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 33444455555555555555555555555555555555555444443
No 203
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=90.47 E-value=2.9 Score=40.19 Aligned_cols=68 Identities=18% Similarity=0.306 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 001692 612 EELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMET 679 (1027)
Q Consensus 612 ~~L~~e~~kLe~~l~~l~~~l~elek~~~ele~~~~~~~~~l~~~~~~~~~l~~~~~~Lee~l~~le~ 679 (1027)
+.|...+++|.+.++.+..++++..+..+..+.+..++..++......+..++..+..|+.+|..++.
T Consensus 57 ~~l~~tKkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~ie~ 124 (126)
T PF07889_consen 57 ESLSSTKKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDEIEE 124 (126)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44556677777777778888888777777777777777777777777777777777777777776653
No 204
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=90.26 E-value=27 Score=36.79 Aligned_cols=8 Identities=13% Similarity=0.509 Sum_probs=2.8
Q ss_pred HHHHHHHH
Q 001692 627 SLEKKIDE 634 (1027)
Q Consensus 627 ~l~~~l~e 634 (1027)
+...++..
T Consensus 122 ey~~~l~~ 129 (207)
T PF05010_consen 122 EYEERLKK 129 (207)
T ss_pred HHHHHHHH
Confidence 33333333
No 205
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=90.23 E-value=0.085 Score=67.45 Aligned_cols=76 Identities=18% Similarity=0.274 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001692 611 VEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1027)
Q Consensus 611 ~~~L~~e~~kLe~~l~~l~~~l~elek~~~ele~~~~~~~~~l~~~~~~~~~l~~~~~~Lee~l~~le~e~~~L~q 686 (1027)
.+.|...+.+|...+.++...+++.......+++.+..+..+++++...+...+.....|+.+.+++...+..++.
T Consensus 316 ~EelEeaKKkL~~~L~el~e~le~~~~~~~~LeK~k~rL~~EleDl~~eLe~~~~~~~~LeKKqr~fDk~l~e~k~ 391 (859)
T PF01576_consen 316 TEELEEAKKKLERKLQELQEQLEEANAKVSSLEKTKKRLQGELEDLTSELEKAQAAAAELEKKQRKFDKQLAEWKA 391 (859)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 4455556666666666666666666666666666666666666665555555555555555555555555444433
No 206
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=90.07 E-value=38 Score=40.91 Aligned_cols=22 Identities=18% Similarity=0.362 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHhHHHHHHHH
Q 001692 663 LKTAMHRLEEKVSDMETENQIL 684 (1027)
Q Consensus 663 l~~~~~~Lee~l~~le~e~~~L 684 (1027)
++.++..++.++..++.++..+
T Consensus 322 ~~~~~~~l~~~~~~l~~~~~~~ 343 (498)
T TIGR03007 322 AEAEIASLEARVAELTARIERL 343 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 207
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=90.04 E-value=67 Score=41.08 Aligned_cols=30 Identities=7% Similarity=-0.016 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001692 657 ESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1027)
Q Consensus 657 ~~~~~~l~~~~~~Lee~l~~le~e~~~L~q 686 (1027)
+.++.+|+.+.+..++....+-...+..+.
T Consensus 375 ~~e~~~L~Re~~~~~~~Y~~ll~r~~e~~~ 404 (754)
T TIGR01005 375 QVDLDALQRDAAAKRQLYESYLTNYRQAAS 404 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555555554444443
No 208
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=90.01 E-value=28 Score=36.65 Aligned_cols=72 Identities=18% Similarity=0.253 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001692 615 TSENEKLKTLVSSLEKKID-ETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1027)
Q Consensus 615 ~~e~~kLe~~l~~l~~~l~-elek~~~ele~~~~~~~~~l~~~~~~~~~l~~~~~~Lee~l~~le~e~~~L~q 686 (1027)
...+.+.++.++.|+...+ .++....+..........++..++..+...+-.+..|++.|.....|+..|-.
T Consensus 124 ~~~l~~~eqry~aLK~hAeekL~~ANeei~~v~~~~~~e~~aLqa~lkk~e~~~~SLe~~LeQK~kEn~ELtk 196 (207)
T PF05010_consen 124 EERLKKEEQRYQALKAHAEEKLEKANEEIAQVRSKHQAELLALQASLKKEEMKVQSLEESLEQKTKENEELTK 196 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444433332 24445555555555666677777778888888888888888888888877654
No 209
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=90.01 E-value=26 Score=39.05 Aligned_cols=22 Identities=9% Similarity=0.282 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHHH
Q 001692 659 KIVQLKTAMHRLEEKVSDMETE 680 (1027)
Q Consensus 659 ~~~~l~~~~~~Lee~l~~le~e 680 (1027)
.+...+..+..++..+...+..
T Consensus 127 ~~~~~~~~l~~l~~~l~~~r~~ 148 (302)
T PF10186_consen 127 ELEERKQRLSQLQSQLARRRRQ 148 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334444444444433
No 210
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=90.00 E-value=2.5 Score=44.26 Aligned_cols=52 Identities=21% Similarity=0.233 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcc
Q 001692 638 KFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQSL 689 (1027)
Q Consensus 638 ~~~ele~~~~~~~~~l~~~~~~~~~l~~~~~~Lee~l~~le~e~~~L~qq~~ 689 (1027)
....++.+.++..++++.++.+...++++.+.+..+..+|-+|...|+.|..
T Consensus 159 ~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~ 210 (216)
T KOG1962|consen 159 DLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIE 210 (216)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Confidence 3334444444445555555666666666666666666666666666666654
No 211
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=89.91 E-value=3.6 Score=35.17 Aligned_cols=24 Identities=21% Similarity=0.324 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHH
Q 001692 663 LKTAMHRLEEKVSDMETENQILRQ 686 (1027)
Q Consensus 663 l~~~~~~Lee~l~~le~e~~~L~q 686 (1027)
....+...-.++.+|..|++.|++
T Consensus 38 ~~~~l~~a~~e~~~Lk~E~e~L~~ 61 (69)
T PF14197_consen 38 AERQLGDAYEENNKLKEENEALRK 61 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444445555444444
No 212
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=89.77 E-value=26 Score=43.08 Aligned_cols=63 Identities=14% Similarity=0.176 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001692 614 LTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSD 676 (1027)
Q Consensus 614 L~~e~~kLe~~l~~l~~~l~elek~~~ele~~~~~~~~~l~~~~~~~~~l~~~~~~Lee~l~~ 676 (1027)
...|..+++.++++...+++..+-++++.++++.-+.-.+.+....+.+|++-...|+....+
T Consensus 492 ~d~e~~rik~ev~eal~~~k~~q~kLe~sekEN~iL~itlrQrDaEi~RL~eLtR~LQ~Sma~ 554 (861)
T PF15254_consen 492 FDIETTRIKIEVEEALVNVKSLQFKLEASEKENQILGITLRQRDAEIERLRELTRTLQNSMAK 554 (861)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444444444444443333333333333
No 213
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=89.74 E-value=5.4 Score=33.18 Aligned_cols=12 Identities=25% Similarity=0.529 Sum_probs=4.4
Q ss_pred HHHHHHhHHHHH
Q 001692 670 LEEKVSDMETEN 681 (1027)
Q Consensus 670 Lee~l~~le~e~ 681 (1027)
|..+|..|+.++
T Consensus 44 L~~ei~~L~~e~ 55 (61)
T PF08826_consen 44 LEQEIERLKKEM 55 (61)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 214
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=89.67 E-value=37 Score=37.56 Aligned_cols=23 Identities=13% Similarity=0.203 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 001692 654 LEAESKIVQLKTAMHRLEEKVSD 676 (1027)
Q Consensus 654 ~~~~~~~~~l~~~~~~Lee~l~~ 676 (1027)
+..+..+..|+..+++|--++++
T Consensus 197 ~kRQ~yI~~LEsKVqDLm~Eirn 219 (401)
T PF06785_consen 197 DKRQAYIGKLESKVQDLMYEIRN 219 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444443
No 215
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=89.65 E-value=58 Score=39.80 Aligned_cols=36 Identities=11% Similarity=0.229 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCC
Q 001692 891 FKQQLAAYVEKIYGIIRDNLKKELSSLLSLCIQAPRT 927 (1027)
Q Consensus 891 f~q~L~~~~~~iy~~l~~~~~k~L~~~l~~~i~~~~~ 927 (1027)
|++++... +.-+.-+-.+...++.-+...|-.-||+
T Consensus 605 lk~ev~s~-ekr~~rlk~vF~~ki~eFr~ac~sL~Gy 640 (716)
T KOG4593|consen 605 LKKEVESA-EKRNQRLKEVFASKIQEFRDACYSLLGY 640 (716)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 44444443 3344555555666666666666433333
No 216
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=89.53 E-value=10 Score=35.93 Aligned_cols=78 Identities=19% Similarity=0.287 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001692 609 AVVEELTSENEKLKTLVSSLEKKIDETEKKFE---------------ETSKISEERLKQALEAESKIVQLKTAMHRLEEK 673 (1027)
Q Consensus 609 ~~~~~L~~e~~kLe~~l~~l~~~l~elek~~~---------------ele~~~~~~~~~l~~~~~~~~~l~~~~~~Lee~ 673 (1027)
.+.+.+-.++..++.++.+.++.++++++--. +.++...++..+++.++-++..++++...++++
T Consensus 20 ~ql~~~~~qk~~le~qL~E~~~al~Ele~l~eD~~vYk~VG~llvk~~k~~~~~eL~er~E~Le~ri~tLekQe~~l~e~ 99 (119)
T COG1382 20 QQLQKVILQKQQLEAQLKEIEKALEELEKLDEDAPVYKKVGNLLVKVSKEEAVDELEERKETLELRIKTLEKQEEKLQER 99 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHhhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666667777776666666553111 223444455555566677777777777777777
Q ss_pred HHhHHHHHHHHHH
Q 001692 674 VSDMETENQILRQ 686 (1027)
Q Consensus 674 l~~le~e~~~L~q 686 (1027)
+++|++++...-.
T Consensus 100 l~eLq~~i~~~l~ 112 (119)
T COG1382 100 LEELQSEIQKALG 112 (119)
T ss_pred HHHHHHHHHHHhh
Confidence 7777777765443
No 217
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=89.46 E-value=39 Score=42.13 Aligned_cols=25 Identities=48% Similarity=0.538 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhc
Q 001692 890 LFKQQLAAYVEKIYGIIRDNLKKELSSLLSLCIQ 923 (1027)
Q Consensus 890 ~f~q~L~~~~~~iy~~l~~~~~k~L~~~l~~~i~ 923 (1027)
..+.+|.+... =||.|+.+|--+||
T Consensus 679 emqrqL~aAEd---------EKKTLNsLLRmAIQ 703 (717)
T PF09730_consen 679 EMQRQLAAAED---------EKKTLNSLLRMAIQ 703 (717)
T ss_pred HHHHHHHHhHH---------HHHHHHHHHHHHHH
Confidence 34555555544 35667777776664
No 218
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=89.32 E-value=6.8 Score=46.68 Aligned_cols=16 Identities=25% Similarity=0.453 Sum_probs=10.4
Q ss_pred HHHHhhcCCcchhhhhH
Q 001692 131 ILDLIEKKPGGIIALLD 147 (1027)
Q Consensus 131 ~ldli~~~~~Gil~lLd 147 (1027)
+.+|..++. +|+.+|-
T Consensus 59 vyEL~~~~~-~li~il~ 74 (652)
T COG2433 59 VYELGADKR-DLIRILK 74 (652)
T ss_pred HHHHhcChh-HHHHHHH
Confidence 667776654 6777765
No 219
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=89.20 E-value=60 Score=40.93 Aligned_cols=61 Identities=20% Similarity=0.271 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001692 523 TGALQAAKNKLEKQVEELTWRLQLEKRMRVDMEEAKTQENAKLQSALQEMQLQFKESKEKL 583 (1027)
Q Consensus 523 ~~~L~~~k~~LE~kv~el~~rl~~e~~~~~ele~~~~~e~~~L~~~l~~le~~l~~~~~~l 583 (1027)
.+...+....|.+++..+-..+....-....-|.+-.+|...+..+++.|+..+++++.++
T Consensus 602 ~e~a~d~Qe~L~~R~~~vl~~l~~~~P~LS~AEr~~~~EL~~~~~~l~~l~~si~~lk~k~ 662 (717)
T PF10168_consen 602 YEEAKDKQEKLMKRVDRVLQLLNSQLPVLSEAEREFKKELERMKDQLQDLKASIEQLKKKL 662 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444555555554444311111111222333455555555555555555554443
No 220
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=89.11 E-value=19 Score=41.24 Aligned_cols=70 Identities=19% Similarity=0.316 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHhHHHHHHHHH
Q 001692 616 SENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKI------VQLKTAMHRLEEKVSDMETENQILR 685 (1027)
Q Consensus 616 ~e~~kLe~~l~~l~~~l~elek~~~ele~~~~~~~~~l~~~~~~~------~~l~~~~~~Lee~l~~le~e~~~L~ 685 (1027)
.++.+.+..+......+.++...+.++..++++...++++....+ ...+..+..|+++|..+.-.+..++
T Consensus 280 ~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~emeerg~~mtD~sPlv~IKqAl~kLk~EI~qMdvrIGVle 355 (359)
T PF10498_consen 280 DELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEMEERGSSMTDGSPLVKIKQALTKLKQEIKQMDVRIGVLE 355 (359)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHhhhhhheeh
Confidence 333333333444444444444444444444444333333322222 2334444444444444444444433
No 221
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=88.91 E-value=35 Score=43.57 Aligned_cols=16 Identities=13% Similarity=0.453 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 001692 611 VEELTSENEKLKTLVS 626 (1027)
Q Consensus 611 ~~~L~~e~~kLe~~l~ 626 (1027)
+..|..+...++.++.
T Consensus 290 i~~L~~~l~~l~~~~~ 305 (754)
T TIGR01005 290 IQRLRERQAELRATIA 305 (754)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444333
No 222
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=88.74 E-value=70 Score=39.55 Aligned_cols=47 Identities=17% Similarity=0.104 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001692 640 EETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1027)
Q Consensus 640 ~ele~~~~~~~~~l~~~~~~~~~l~~~~~~Lee~l~~le~e~~~L~q 686 (1027)
..++-+.++....++..+-+++..++++.-|.-.|...++|+..|+.
T Consensus 497 ~rik~ev~eal~~~k~~q~kLe~sekEN~iL~itlrQrDaEi~RL~e 543 (861)
T PF15254_consen 497 TRIKIEVEEALVNVKSLQFKLEASEKENQILGITLRQRDAEIERLRE 543 (861)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHhhhhHhhhHHHHHHHHHHHHHH
Confidence 34445555555556666666666666666666555555555555544
No 223
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=88.72 E-value=16 Score=41.85 Aligned_cols=14 Identities=7% Similarity=0.323 Sum_probs=6.4
Q ss_pred HHHHHHhHHHHHHH
Q 001692 670 LEEKVSDMETENQI 683 (1027)
Q Consensus 670 Lee~l~~le~e~~~ 683 (1027)
.+..+.+|+.|+..
T Consensus 333 IKqAl~kLk~EI~q 346 (359)
T PF10498_consen 333 IKQALTKLKQEIKQ 346 (359)
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444444443
No 224
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.64 E-value=73 Score=39.59 Aligned_cols=14 Identities=21% Similarity=0.271 Sum_probs=5.9
Q ss_pred CHHHHHHHHHHHHH
Q 001692 28 DPEAAAVSRDALAK 41 (1027)
Q Consensus 28 ~~~~a~~~rdalak 41 (1027)
+-..|..+--+|||
T Consensus 39 DRR~A~rgLKa~sr 52 (970)
T KOG0946|consen 39 DRRDAVRGLKAFSR 52 (970)
T ss_pred hHHHHHHHHHHHHH
Confidence 33344444444444
No 225
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=88.44 E-value=17 Score=38.87 Aligned_cols=20 Identities=30% Similarity=0.431 Sum_probs=8.3
Q ss_pred HHHHHHHHHhHHHHHHHHHH
Q 001692 667 MHRLEEKVSDMETENQILRQ 686 (1027)
Q Consensus 667 ~~~Lee~l~~le~e~~~L~q 686 (1027)
+..+.+++..|+.+++.++.
T Consensus 83 i~r~~eey~~Lk~~in~~R~ 102 (230)
T PF10146_consen 83 IQRLYEEYKPLKDEINELRK 102 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444443
No 226
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=88.37 E-value=8.8 Score=38.31 Aligned_cols=20 Identities=20% Similarity=0.348 Sum_probs=10.9
Q ss_pred HHHHHHHHhHHHHHHHHHHh
Q 001692 668 HRLEEKVSDMETENQILRQQ 687 (1027)
Q Consensus 668 ~~Lee~l~~le~e~~~L~qq 687 (1027)
....-++++.+.|+..|+.+
T Consensus 129 tq~~~e~rkke~E~~kLk~r 148 (151)
T PF11559_consen 129 TQYEHELRKKEREIEKLKER 148 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33445555666666666543
No 227
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=88.36 E-value=50 Score=37.77 Aligned_cols=35 Identities=9% Similarity=0.126 Sum_probs=21.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001692 607 DHAVVEELTSENEKLKTLVSSLEKKIDETEKKFEE 641 (1027)
Q Consensus 607 ~~~~~~~L~~e~~kLe~~l~~l~~~l~elek~~~e 641 (1027)
-+.+++-.++.....+.++....+..+.++|++..
T Consensus 345 ~E~E~q~~~kkrqnaekql~~Ake~~eklkKKrss 379 (575)
T KOG4403|consen 345 HEVEVQYYNKKRQNAEKQLKEAKEMAEKLKKKRSS 379 (575)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhcc
Confidence 35556666666666666666666666655555544
No 228
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=88.35 E-value=73 Score=39.25 Aligned_cols=75 Identities=19% Similarity=0.245 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHhHHHHH
Q 001692 612 EELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEK----------VSDMETEN 681 (1027)
Q Consensus 612 ~~L~~e~~kLe~~l~~l~~~l~elek~~~ele~~~~~~~~~l~~~~~~~~~l~~~~~~Lee~----------l~~le~e~ 681 (1027)
......+.+++..++.+-..++.+......+++....+...+..+++....+..++..+.+. +..+++++
T Consensus 278 ~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL 357 (569)
T PRK04778 278 DEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQL 357 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHHHHHHHHHH
Confidence 33344444445555555555555555555555555555555555555555555555555544 44455555
Q ss_pred HHHHH
Q 001692 682 QILRQ 686 (1027)
Q Consensus 682 ~~L~q 686 (1027)
+.+..
T Consensus 358 ~~Le~ 362 (569)
T PRK04778 358 ESLEK 362 (569)
T ss_pred HHHHH
Confidence 44444
No 229
>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism]
Probab=88.06 E-value=29 Score=40.30 Aligned_cols=40 Identities=13% Similarity=0.102 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh
Q 001692 453 QTGMRGMAARNELRFRRQTRASILIQSHCRKYLARLHYMK 492 (1027)
Q Consensus 453 Qs~~Rg~~aR~~~~~~r~~~aa~~IQ~~~R~~~~r~~~~~ 492 (1027)
++.+--+..-.++.....+.||..+|..|.-|+..+-+++
T Consensus 346 EKhVhNFMmDtqLTk~~KnAAA~VLqeTW~i~K~trl~~k 385 (489)
T KOG3684|consen 346 EKHVHNFMMDTQLTKEHKNAAANVLQETWLIYKHTKLVSK 385 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 3444445555556666677899999999998887766533
No 230
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=88.04 E-value=25 Score=33.60 Aligned_cols=6 Identities=17% Similarity=0.191 Sum_probs=2.1
Q ss_pred HHHHHH
Q 001692 623 TLVSSL 628 (1027)
Q Consensus 623 ~~l~~l 628 (1027)
.++.++
T Consensus 75 ~el~~l 80 (120)
T PF12325_consen 75 QELEEL 80 (120)
T ss_pred HHHHHH
Confidence 333333
No 231
>PRK11281 hypothetical protein; Provisional
Probab=87.96 E-value=17 Score=47.82 Aligned_cols=19 Identities=16% Similarity=-0.041 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 001692 610 VVEELTSENEKLKTLVSSL 628 (1027)
Q Consensus 610 ~~~~L~~e~~kLe~~l~~l 628 (1027)
....|+.|..-++.+++-.
T Consensus 193 ~~~~l~ae~~~l~~~~~~~ 211 (1113)
T PRK11281 193 QRVLLQAEQALLNAQNDLQ 211 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444443333
No 232
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=87.88 E-value=32 Score=34.60 Aligned_cols=79 Identities=13% Similarity=0.168 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001692 608 HAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1027)
Q Consensus 608 ~~~~~~L~~e~~kLe~~l~~l~~~l~elek~~~ele~~~~~~~~~l~~~~~~~~~l~~~~~~Lee~l~~le~e~~~L~q 686 (1027)
++.+...-.+-..++-.+.-++.+-..+...+.+|++....+..-++.++.-+.+..--+.=|...+..+...++.+++
T Consensus 76 E~dik~AYe~A~~lQ~~L~~~re~E~qLr~rRD~LErrl~~l~~tierAE~l~sqi~vvl~yL~~dl~~v~~~~e~~~~ 154 (159)
T PF05384_consen 76 EEDIKEAYEEAHELQVRLAMLREREKQLRERRDELERRLRNLEETIERAENLVSQIGVVLNYLSGDLQQVSEQIEDAQQ 154 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 4555555666666777777777777777777777777777777777777666666666666666666666666665554
No 233
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=87.79 E-value=27 Score=45.87 Aligned_cols=19 Identities=42% Similarity=0.604 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 001692 611 VEELTSENEKLKTLVSSLE 629 (1027)
Q Consensus 611 ~~~L~~e~~kLe~~l~~l~ 629 (1027)
...|+.|..-++.+++.++
T Consensus 175 ~~~lqae~~~l~~~~~~l~ 193 (1109)
T PRK10929 175 LTALQAESAALKALVDELE 193 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444443333
No 234
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=87.70 E-value=8.9 Score=31.90 Aligned_cols=42 Identities=14% Similarity=0.265 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 001692 637 KKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDME 678 (1027)
Q Consensus 637 k~~~ele~~~~~~~~~l~~~~~~~~~l~~~~~~Lee~l~~le 678 (1027)
.++...+...-..+.+|++++.+..+|+.++..|+.++..++
T Consensus 18 eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r 59 (61)
T PF08826_consen 18 EELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELR 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333344444444555555555555556666666666655554
No 235
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=87.60 E-value=42 Score=38.45 Aligned_cols=12 Identities=25% Similarity=0.351 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHH
Q 001692 516 LKMAARETGALQ 527 (1027)
Q Consensus 516 l~~~a~~~~~L~ 527 (1027)
|..+...+..++
T Consensus 10 L~et~~~V~~m~ 21 (344)
T PF12777_consen 10 LKETEEQVEEMQ 21 (344)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 236
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=87.51 E-value=26 Score=37.54 Aligned_cols=62 Identities=18% Similarity=0.281 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 001692 612 EELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETE 680 (1027)
Q Consensus 612 ~~L~~e~~kLe~~l~~l~~~l~elek~~~ele~~~~~~~~~l~~~~~~~~~l~~~~~~Lee~l~~le~e 680 (1027)
+.|..|+.....+|......+..++..+..++.+ ....+..+..+.++...|.+++..+..+
T Consensus 42 ~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~e-------r~~~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 42 EELLQERMAHVEELRQINQDINTLENIIKQAESE-------RNKRQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444 4455556666667777777777777777
No 237
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=87.32 E-value=95 Score=39.40 Aligned_cols=80 Identities=18% Similarity=0.256 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 001692 608 HAVVEELTSENEKLKTLVSSLEKKIDE------TEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETEN 681 (1027)
Q Consensus 608 ~~~~~~L~~e~~kLe~~l~~l~~~l~e------lek~~~ele~~~~~~~~~l~~~~~~~~~l~~~~~~Lee~l~~le~e~ 681 (1027)
...+..|..++.+....+..+...+.. ....+..|+.+......+...++..++.|-.-+..++.+-..++.++
T Consensus 513 ~s~i~~l~I~lEk~rek~~kl~~ql~k~~~~~e~~~r~~~Le~ev~~~~ee~~kaq~EVERLl~~L~~~E~EK~~ke~ki 592 (775)
T PF10174_consen 513 DSEIERLEIELEKKREKHEKLEKQLEKLRANAELRDRIQQLEQEVTRYREESEKAQAEVERLLDILREAENEKNDKEKKI 592 (775)
T ss_pred hhHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 444555555555555555555544433 22244445555544455555556666666665556555555555555
Q ss_pred HHHHHh
Q 001692 682 QILRQQ 687 (1027)
Q Consensus 682 ~~L~qq 687 (1027)
..|...
T Consensus 593 ~~Leke 598 (775)
T PF10174_consen 593 GELEKE 598 (775)
T ss_pred HHHHHH
Confidence 555543
No 238
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=87.29 E-value=64 Score=37.42 Aligned_cols=16 Identities=13% Similarity=0.416 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 001692 948 WQSIIDSLNTLLSTLK 963 (1027)
Q Consensus 948 ~~~il~~L~~~~~~l~ 963 (1027)
+.|+-.-|+.++.-|+
T Consensus 603 ledl~~~l~k~~~~l~ 618 (622)
T COG5185 603 LEDLENELGKVIEELR 618 (622)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3455555555555443
No 239
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=87.06 E-value=27 Score=44.80 Aligned_cols=38 Identities=16% Similarity=0.273 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHhccCC-CeeeEe-------------cCCCCC--CCCCccccc
Q 001692 247 RFKQQLQQLLETLSSSE-PHYIRC-------------VKPNNL--LKPAIFENK 284 (1027)
Q Consensus 247 ~f~~~l~~L~~~l~~t~-~hfIrC-------------ikpN~~--~~~~~fd~~ 284 (1027)
..-..|..|+++|...+ -++|+| +-|++. +..+.||..
T Consensus 163 IIPRal~~IFd~Le~~~~EYsvKVSfLELYNEEl~DLLa~~~~~~~~~~~k~~~ 216 (1041)
T KOG0243|consen 163 IIPRALRQIFDTLEAQGAEYSVKVSFLELYNEELTDLLASEDTSDKKLRIKDDS 216 (1041)
T ss_pred cchHHHHHHHHHHHhcCCeEEEEEEehhhhhHHHHHhcCCccccccccccccCC
Confidence 34456777788887777 445666 356665 555666665
No 240
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=87.04 E-value=45 Score=41.03 Aligned_cols=23 Identities=17% Similarity=0.391 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHH
Q 001692 662 QLKTAMHRLEEKVSDMETENQIL 684 (1027)
Q Consensus 662 ~l~~~~~~Lee~l~~le~e~~~L 684 (1027)
.+++++..+++++..+-.++...
T Consensus 350 ~L~~el~~l~~~l~~~a~~Ls~~ 372 (563)
T TIGR00634 350 ALEEEVDKLEEELDKAAVALSLI 372 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 241
>PRK12704 phosphodiesterase; Provisional
Probab=86.85 E-value=26 Score=42.42 Aligned_cols=17 Identities=18% Similarity=0.198 Sum_probs=10.1
Q ss_pred ccHHHHHHHHHHHHHHH
Q 001692 946 SHWQSIIDSLNTLLSTL 962 (1027)
Q Consensus 946 ~~~~~il~~L~~~~~~l 962 (1027)
.+++..++.|..+-.+.
T Consensus 436 ~~~e~~i~rl~~le~i~ 452 (520)
T PRK12704 436 ETLENYIKRLEKLEEIA 452 (520)
T ss_pred ccHHHHHHHHHHHHHHH
Confidence 45566666666665554
No 242
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=86.81 E-value=21 Score=41.10 Aligned_cols=22 Identities=27% Similarity=0.386 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHhHHHHHHHH
Q 001692 663 LKTAMHRLEEKVSDMETENQIL 684 (1027)
Q Consensus 663 l~~~~~~Lee~l~~le~e~~~L 684 (1027)
..+.+...++++..|++++..|
T Consensus 426 ~~~~~~s~d~~I~dLqEQlrDl 447 (493)
T KOG0804|consen 426 EKEALGSKDEKITDLQEQLRDL 447 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHhH
Confidence 3344455555666666655443
No 243
>PF13514 AAA_27: AAA domain
Probab=85.90 E-value=76 Score=42.53 Aligned_cols=83 Identities=16% Similarity=0.262 Sum_probs=41.5
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 001692 604 PVIDHAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKI-----SEERLKQALEAESKIVQLKTAMHRLEEKVSDME 678 (1027)
Q Consensus 604 ~~~~~~~~~~L~~e~~kLe~~l~~l~~~l~elek~~~ele~~-----~~~~~~~l~~~~~~~~~l~~~~~~Lee~l~~le 678 (1027)
|....++...+..+...++..++.++.++..++.++..+.-. .......|......+.....++..++.++..++
T Consensus 237 p~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~l~~~~~ll~~~~~I~~L~~~~~~~~~~~~dl~~~~~e~~~~~ 316 (1111)
T PF13514_consen 237 PEDGAERLEQLEEELAEAQAQLERLQEELAQLEEELDALPVDEELLAHAAEIEALEEQRGEYRKARQDLPRLEAELAELE 316 (1111)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333456666666677777777777777776666655543211 111112222233333444444444555555555
Q ss_pred HHHHHHHH
Q 001692 679 TENQILRQ 686 (1027)
Q Consensus 679 ~e~~~L~q 686 (1027)
.++..+..
T Consensus 317 ~~~~~~~~ 324 (1111)
T PF13514_consen 317 AELRALLA 324 (1111)
T ss_pred HHHHHHHH
Confidence 55544433
No 244
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=85.90 E-value=60 Score=35.71 Aligned_cols=85 Identities=22% Similarity=0.191 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001692 562 NAKLQSALQEMQLQFKESKEKLMKEIEVAKKEAEKVPVVQEVPVIDHAVVEELTSENEKLKTLVSSLEKKIDETEKKFEE 641 (1027)
Q Consensus 562 ~~~L~~~l~~le~~l~~~~~~l~~e~~~~~~~~ee~~~~~e~~~~~~~~~~~L~~e~~kLe~~l~~l~~~l~elek~~~e 641 (1027)
.+.++.++...+.++.+++...+.+..+..+-..+- ..-++++..+..++--|++++++...+....++.+.+
T Consensus 181 lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kq-------es~eERL~QlqsEN~LLrQQLddA~~K~~~kek~Vin 253 (305)
T PF14915_consen 181 LESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQ-------ESLEERLSQLQSENMLLRQQLDDAHNKADNKEKTVIN 253 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445566666666666666665544444433332211 1137788899999999999999999999888888888
Q ss_pred HHHHHHHHHHHH
Q 001692 642 TSKISEERLKQA 653 (1027)
Q Consensus 642 le~~~~~~~~~l 653 (1027)
......+....|
T Consensus 254 iQ~~f~d~~~~L 265 (305)
T PF14915_consen 254 IQDQFQDIVKKL 265 (305)
T ss_pred HHHHHHHHHHHH
Confidence 777776555555
No 245
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=85.79 E-value=11 Score=39.55 Aligned_cols=61 Identities=26% Similarity=0.389 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001692 615 TSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVS 675 (1027)
Q Consensus 615 ~~e~~kLe~~l~~l~~~l~elek~~~ele~~~~~~~~~l~~~~~~~~~l~~~~~~Lee~l~ 675 (1027)
+.+++++..+++-+++++++.+++++.+++....+.++.+......+++-++.+.|++++.
T Consensus 150 ~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~ 210 (216)
T KOG1962|consen 150 EEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIE 210 (216)
T ss_pred hhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Confidence 3344444444444444444444444444444444444444555555555555555555443
No 246
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=85.68 E-value=54 Score=34.96 Aligned_cols=70 Identities=14% Similarity=0.161 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001692 618 NEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1027)
Q Consensus 618 ~~kLe~~l~~l~~~l~elek~~~ele~~~~~~~~~l~~~~~~~~~l~~~~~~Lee~l~~le~e~~~L~qq 687 (1027)
+.+|+.++.--+.--++++....+|.+-.+++..+++..+..+--|+.++..-+.+|..++..++.+.+-
T Consensus 238 ia~Le~eLAmQKs~seElkssq~eL~dfm~eLdedVEgmqsTiliLQq~Lketr~~Iq~l~k~~~q~sqa 307 (330)
T KOG2991|consen 238 IAELEIELAMQKSQSEELKSSQEELYDFMEELDEDVEGMQSTILILQQKLKETRKEIQRLKKGLEQVSQA 307 (330)
T ss_pred HHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444555667777777777888888888999999999999999999999999999888763
No 247
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=85.49 E-value=0.25 Score=62.27 Aligned_cols=57 Identities=26% Similarity=0.363 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 001692 628 LEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQIL 684 (1027)
Q Consensus 628 l~~~l~elek~~~ele~~~~~~~~~l~~~~~~~~~l~~~~~~Lee~l~~le~e~~~L 684 (1027)
++..+.+++.++.+......++.-++..+++++..++.+...+..+...|++.++.|
T Consensus 368 ~k~qi~eLe~~l~~~~~~~~~l~~e~~~L~ek~~~l~~eke~l~~e~~~L~e~~eeL 424 (713)
T PF05622_consen 368 YKKQIQELEQKLSEESRRADKLEFENKQLEEKLEALEEEKERLQEERDSLRETNEEL 424 (713)
T ss_dssp ---------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333333333333333333344444444455555555555555555555544444
No 248
>PRK10869 recombination and repair protein; Provisional
Probab=85.40 E-value=1e+02 Score=37.87 Aligned_cols=32 Identities=16% Similarity=0.201 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhc
Q 001692 657 ESKIVQLKTAMHRLEEKVSDMETENQILRQQS 688 (1027)
Q Consensus 657 ~~~~~~l~~~~~~Lee~l~~le~e~~~L~qq~ 688 (1027)
+..+..|+.++..+++++..+-.++...|+++
T Consensus 340 e~~l~~Le~e~~~l~~~l~~~A~~LS~~R~~a 371 (553)
T PRK10869 340 EDDLETLALAVEKHHQQALETAQKLHQSRQRY 371 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555555555555555543
No 249
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=85.40 E-value=24 Score=32.51 Aligned_cols=71 Identities=20% Similarity=0.169 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 001692 615 TSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILR 685 (1027)
Q Consensus 615 ~~e~~kLe~~l~~l~~~l~elek~~~ele~~~~~~~~~l~~~~~~~~~l~~~~~~Lee~l~~le~e~~~L~ 685 (1027)
-.+-.+|+.+..-|++.+-+.+.+..++...+...+..+..++..++.|.=.+++|...+..|++|+....
T Consensus 4 a~eYsKLraQ~~vLKKaVieEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~~~~ 74 (102)
T PF10205_consen 4 AQEYSKLRAQNQVLKKAVIEEQAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELEESE 74 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34555666666666666666666666666666666666666666677777777777777777777777543
No 250
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=85.39 E-value=41 Score=40.71 Aligned_cols=114 Identities=17% Similarity=0.184 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001692 562 NAKLQSALQEMQLQFKESKEKLMKEIEVAKKEAEKVPVVQEVPVIDHAVVEELTSENEKLKTLVSSLEKKIDETEKKFEE 641 (1027)
Q Consensus 562 ~~~L~~~l~~le~~l~~~~~~l~~e~~~~~~~~ee~~~~~e~~~~~~~~~~~L~~e~~kLe~~l~~l~~~l~elek~~~e 641 (1027)
....+..+++.+.+.+....+...+-+...+.. ..+.-.++.....+++.++.+.+.++.+.+..+..
T Consensus 20 k~~a~~~l~~Ae~eAe~i~keA~~eAke~~ke~------------~~EaeeE~~~~R~Ele~el~~~e~rL~qrE~rL~q 87 (514)
T TIGR03319 20 KRIAEKKLGSAEELAKRIIEEAKKEAETLKKEA------------LLEAKEEVHKLRAELERELKERRNELQRLERRLLQ 87 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001692 642 TSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1027)
Q Consensus 642 le~~~~~~~~~l~~~~~~~~~l~~~~~~Lee~l~~le~e~~~L~qq 687 (1027)
-+..+++....++..+..+...+.++...++++..+..+...+.++
T Consensus 88 Ree~Lekr~e~Lekre~~Le~ke~~L~~re~eLee~~~e~~~~~~~ 133 (514)
T TIGR03319 88 REETLDRKMESLDKKEENLEKKEKELSNKEKNLDEKEEELEELIAE 133 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 251
>PRK00106 hypothetical protein; Provisional
Probab=85.09 E-value=53 Score=39.79 Aligned_cols=129 Identities=16% Similarity=0.164 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001692 554 MEEAKTQENAKLQSALQEMQLQFKESKEKLMKEIEVAKKEAEKVPVVQEVPVIDHAVVEELTSENEKLKTLVSSLEKKID 633 (1027)
Q Consensus 554 le~~~~~e~~~L~~~l~~le~~l~~~~~~l~~e~~~~~~~~ee~~~~~e~~~~~~~~~~~L~~e~~kLe~~l~~l~~~l~ 633 (1027)
+..++....-.|-..-...+.-+++++.+...-.+......++. ......+.-.++.....++++++.+-+.++.
T Consensus 26 ~~~~~~~~~~~~~~A~~~A~~IleeAe~eAe~I~keA~~EAke~-----~ke~~lEaeeEi~~~R~ElEkel~eEr~rL~ 100 (535)
T PRK00106 26 MKSAKEAAELTLLNAEQEAVNLRGKAERDAEHIKKTAKRESKAL-----KKELLLEAKEEARKYREEIEQEFKSERQELK 100 (535)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001692 634 ETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1027)
Q Consensus 634 elek~~~ele~~~~~~~~~l~~~~~~~~~l~~~~~~Lee~l~~le~e~~~L~qq 687 (1027)
+.+..+..-+..+++....|+..+..+...++++...++++..++.++..+.++
T Consensus 101 qrE~rL~qREE~LekRee~LekrE~eLe~kekeLe~reeeLee~~~~~~~~~~~ 154 (535)
T PRK00106 101 QIESRLTERATSLDRKDENLSSKEKTLESKEQSLTDKSKHIDEREEQVEKLEEQ 154 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 252
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=84.92 E-value=93 Score=37.07 Aligned_cols=27 Identities=15% Similarity=0.337 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 001692 659 KIVQLKTAMHRLEEKVSDMETENQILR 685 (1027)
Q Consensus 659 ~~~~l~~~~~~Lee~l~~le~e~~~L~ 685 (1027)
++..+.+-+..|.+++.+.+++++.|+
T Consensus 488 QLs~MSEHLasmNeqL~~Q~eeI~~LK 514 (518)
T PF10212_consen 488 QLSMMSEHLASMNEQLAKQREEIQTLK 514 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444555555566666666666666665
No 253
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=84.83 E-value=12 Score=40.82 Aligned_cols=76 Identities=17% Similarity=0.212 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 001692 608 HAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQI 683 (1027)
Q Consensus 608 ~~~~~~L~~e~~kLe~~l~~l~~~l~elek~~~ele~~~~~~~~~l~~~~~~~~~l~~~~~~Lee~l~~le~e~~~ 683 (1027)
..+++.+..+...|..++..++..++.++.....+++....+..++.+++.++..++.....+.--+..+-++++.
T Consensus 41 Q~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~L~~ 116 (251)
T PF11932_consen 41 QKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMIDELEQ 116 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666666666666666666666666666666666666666666666555555555554444443
No 254
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=84.52 E-value=61 Score=34.65 Aligned_cols=25 Identities=24% Similarity=0.260 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001692 518 MAARETGALQAAKNKLEKQVEELTW 542 (1027)
Q Consensus 518 ~~a~~~~~L~~~k~~LE~kv~el~~ 542 (1027)
.+...+..+......+|.++.+++.
T Consensus 42 ~ar~~~A~~~a~~k~~e~~~~~~~~ 66 (225)
T COG1842 42 KARQALAQAIARQKQLERKLEEAQA 66 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444445554444443
No 255
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=84.48 E-value=18 Score=31.43 Aligned_cols=22 Identities=14% Similarity=0.163 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 001692 616 SENEKLKTLVSSLEKKIDETEK 637 (1027)
Q Consensus 616 ~e~~kLe~~l~~l~~~l~elek 637 (1027)
..+.-|+-++++++++...+..
T Consensus 18 dtI~LLqmEieELKekn~~L~~ 39 (79)
T PRK15422 18 DTITLLQMEIEELKEKNNSLSQ 39 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 256
>PF05769 DUF837: Protein of unknown function (DUF837); InterPro: IPR008555 This family consists of several eukaryotic proteins of unknown function. One of the family members (O02197 from SWISSPROT) is a circulating cathodic antigen (CCA) found in Schistosoma mansoni (Blood fluke) [].
Probab=84.39 E-value=53 Score=33.86 Aligned_cols=23 Identities=30% Similarity=0.398 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHh
Q 001692 665 TAMHRLEEKVSDMETENQILRQQ 687 (1027)
Q Consensus 665 ~~~~~Lee~l~~le~e~~~L~qq 687 (1027)
..-...++.|..|+.||+.||..
T Consensus 153 ~~~~~~qe~i~qL~~EN~~LRel 175 (181)
T PF05769_consen 153 ENSQEEQEIIAQLETENKGLREL 175 (181)
T ss_pred hhhHhHHHHHHHHHHHHHHHHHH
Confidence 34456667788888888888764
No 257
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.39 E-value=67 Score=38.02 Aligned_cols=77 Identities=23% Similarity=0.336 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 001692 608 HAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQIL 684 (1027)
Q Consensus 608 ~~~~~~L~~e~~kLe~~l~~l~~~l~elek~~~ele~~~~~~~~~l~~~~~~~~~l~~~~~~Lee~l~~le~e~~~L 684 (1027)
.++++...+++..|+..++.++..+.+.+..+.+++.....+..-....+.++..++--+.+-.+++.+++.++...
T Consensus 330 ~EeIe~~~ke~kdLkEkv~~lq~~l~eke~sl~dlkehassLas~glk~ds~Lk~leIalEqkkEec~kme~qLkkA 406 (654)
T KOG4809|consen 330 LEEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIALEQKKEECSKMEAQLKKA 406 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677777777777777777666666666666665555555545555555555555555555555555555443
No 258
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=83.80 E-value=74 Score=35.03 Aligned_cols=37 Identities=30% Similarity=0.368 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhccc
Q 001692 654 LEAESKIVQLKTAMHRLEEKVSDMETENQILRQQSLL 690 (1027)
Q Consensus 654 ~~~~~~~~~l~~~~~~Lee~l~~le~e~~~L~qq~~~ 690 (1027)
...+.++......-..+++.+..++.|+--|+||...
T Consensus 203 qne~~kv~k~~~Kqes~eERL~QlqsEN~LLrQQLdd 239 (305)
T PF14915_consen 203 QNEQDKVNKYIGKQESLEERLSQLQSENMLLRQQLDD 239 (305)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666777788999999999999999998653
No 259
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=83.73 E-value=24 Score=32.82 Aligned_cols=36 Identities=19% Similarity=0.223 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 001692 649 RLKQALEAESKIVQLKTAMHRLEEKVSDMETENQIL 684 (1027)
Q Consensus 649 ~~~~l~~~~~~~~~l~~~~~~Lee~l~~le~e~~~L 684 (1027)
+..+++..+..+..++.++..++.++.+++.++..+
T Consensus 68 Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~~ 103 (105)
T cd00632 68 LKERLETIELRIKRLERQEEDLQEKLKELQEKIQQA 103 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444455555555555555555555555444
No 260
>PLN03188 kinesin-12 family protein; Provisional
Probab=83.56 E-value=1.6e+02 Score=38.82 Aligned_cols=39 Identities=15% Similarity=0.171 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001692 649 RLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1027)
Q Consensus 649 ~~~~l~~~~~~~~~l~~~~~~Lee~l~~le~e~~~L~qq 687 (1027)
+.-+|+++++.....++.....+.+..++..+++.|+.+
T Consensus 1202 llvrl~eaeea~~~a~~r~~~~eqe~~~~~k~~~klkrk 1240 (1320)
T PLN03188 1202 LLVRLKEAEEALTVAQKRAMDAEQEAAEAYKQIDKLKRK 1240 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555555555555555555555543
No 261
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=83.56 E-value=15 Score=37.89 Aligned_cols=76 Identities=22% Similarity=0.326 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHH
Q 001692 611 VEELTSENEKLKTLVSSLEKKIDE-----------TEKKFEETSKISEERLKQ-----------ALEAESKIVQLKTAMH 668 (1027)
Q Consensus 611 ~~~L~~e~~kLe~~l~~l~~~l~e-----------lek~~~ele~~~~~~~~~-----------l~~~~~~~~~l~~~~~ 668 (1027)
...|..|+..|+..+...+...+. .+.+++.|-+-++....+ +....+.++.+++++.
T Consensus 98 evrLkrELa~Le~~l~~~~~~~~~~~~~~~~~~~lvk~e~EqLL~YK~~ql~~~~~~~~~~~~~l~~v~~Dl~~ie~QV~ 177 (195)
T PF12761_consen 98 EVRLKRELAELEEKLSKVEQAAESRRSDTDSKPALVKREFEQLLDYKERQLRELEEGRSKSGKNLKSVREDLDTIEEQVD 177 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHHHHHHHHH
Confidence 445666777777766666655553 133333333322222222 3456778888889999
Q ss_pred HHHHHHHhHHHHHHHHHH
Q 001692 669 RLEEKVSDMETENQILRQ 686 (1027)
Q Consensus 669 ~Lee~l~~le~e~~~L~q 686 (1027)
.|+.-+...+.|++.|+|
T Consensus 178 ~Le~~L~~k~~eL~~L~q 195 (195)
T PF12761_consen 178 GLESHLSSKKQELQQLRQ 195 (195)
T ss_pred HHHHHHHHHHHHHHHhcC
Confidence 999999999999988874
No 262
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=83.36 E-value=51 Score=33.85 Aligned_cols=78 Identities=23% Similarity=0.313 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 001692 608 HAVVEELTSENEKLKTLVSSLEKKIDE-TEKKFEETSKI----SEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQ 682 (1027)
Q Consensus 608 ~~~~~~L~~e~~kLe~~l~~l~~~l~e-lek~~~ele~~----~~~~~~~l~~~~~~~~~l~~~~~~Lee~l~~le~e~~ 682 (1027)
......+..+..+|+.+++.++.++.+ ..+-..+.+-. +.+...+....+.++ ++-...+..++..++.+++
T Consensus 72 k~~~~~lr~~~e~L~~eie~l~~~L~~ei~~l~a~~klD~n~eK~~~r~e~~~~~~ki---~e~~~ki~~ei~~lr~~iE 148 (177)
T PF07798_consen 72 KSEFAELRSENEKLQREIEKLRQELREEINKLRAEVKLDLNLEKGRIREEQAKQELKI---QELNNKIDTEIANLRTEIE 148 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 344455566666666666666655543 22222222222 222222222222232 2233344555666666666
Q ss_pred HHHHhc
Q 001692 683 ILRQQS 688 (1027)
Q Consensus 683 ~L~qq~ 688 (1027)
.++-+.
T Consensus 149 ~~K~~~ 154 (177)
T PF07798_consen 149 SLKWDT 154 (177)
T ss_pred HHHHHH
Confidence 655443
No 263
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=83.27 E-value=29 Score=35.64 Aligned_cols=81 Identities=10% Similarity=0.206 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhccc
Q 001692 611 VEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQSLL 690 (1027)
Q Consensus 611 ~~~L~~e~~kLe~~l~~l~~~l~elek~~~ele~~~~~~~~~l~~~~~~~~~l~~~~~~Lee~l~~le~e~~~L~qq~~~ 690 (1027)
-..|+.++.-++..+...+.+...+...+.-....-.+....-+..+.....|+.+....+.+|+.|+..+..|+.+...
T Consensus 107 R~~LeAQka~~eR~ia~~~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv~~Lq~q~~~ 186 (192)
T PF11180_consen 107 RAQLEAQKAQLERLIAESEARANRLQADLQIARQQQQQVAARQQQARQEAQALEAERRAAQAQLRQLQRQVRQLQRQANE 186 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34455666666666666666666666655555555555555566777778888888888889999999999988887654
Q ss_pred c
Q 001692 691 S 691 (1027)
Q Consensus 691 ~ 691 (1027)
.
T Consensus 187 ~ 187 (192)
T PF11180_consen 187 P 187 (192)
T ss_pred C
Confidence 3
No 264
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=83.24 E-value=5.3 Score=40.75 Aligned_cols=67 Identities=22% Similarity=0.367 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001692 608 HAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1027)
Q Consensus 608 ~~~~~~L~~e~~kLe~~l~~l~~~l~elek~~~ele~~~~~~~~~l~~~~~~~~~l~~~~~~Lee~l~~le~e~~~L~q 686 (1027)
.+....+..++..|+.++.+++..+..++.++..+.... ...++...+..|+.++..+++.++.|+.
T Consensus 71 ~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~------------t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 71 PEELAELDAEIKELREELAELKKEVKSLEAELASLSSEP------------TNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC------------CHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444555555555555555555544444444444333321 1134555556666666666666666665
No 265
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=83.04 E-value=6.4 Score=36.82 Aligned_cols=76 Identities=25% Similarity=0.342 Sum_probs=51.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001692 607 DHAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1027)
Q Consensus 607 ~~~~~~~L~~e~~kLe~~l~~l~~~l~elek~~~ele~~~~~~~~~l~~~~~~~~~l~~~~~~Lee~l~~le~e~~~L~q 686 (1027)
.-+.+-.+..+...+..++++++.+...+.+++..+.+.. .+.+.+...+..+.+++..+++++..+++++..+-.
T Consensus 27 ~vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~----~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~~l~ 102 (108)
T PF02403_consen 27 DVDEIIELDQERRELQQELEELRAERNELSKEIGKLKKAG----EDAEELKAEVKELKEEIKELEEQLKELEEELNELLL 102 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTT----CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCc----ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777788888888888888887777777777766643 223344445555666666667777777776665543
No 266
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.84 E-value=1.1e+02 Score=36.32 Aligned_cols=33 Identities=18% Similarity=0.216 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001692 614 LTSENEKLKTLVSSLEKKIDETEKKFEETSKIS 646 (1027)
Q Consensus 614 L~~e~~kLe~~l~~l~~~l~elek~~~ele~~~ 646 (1027)
|.....++...+.+++-.++..+++..+++..+
T Consensus 371 Las~glk~ds~Lk~leIalEqkkEec~kme~qL 403 (654)
T KOG4809|consen 371 LASAGLKRDSKLKSLEIALEQKKEECSKMEAQL 403 (654)
T ss_pred HHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444333
No 267
>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin. Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].
Probab=82.82 E-value=63 Score=33.53 Aligned_cols=42 Identities=14% Similarity=0.235 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcccc
Q 001692 650 LKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQSLLS 691 (1027)
Q Consensus 650 ~~~l~~~~~~~~~l~~~~~~Lee~l~~le~e~~~L~qq~~~~ 691 (1027)
..++-....++.+++..+..|..+|.+.+.-+++|+++....
T Consensus 128 ~eel~~a~~K~qemE~RIK~LhaqI~EKDAmIkVLQqrs~~~ 169 (205)
T PF12240_consen 128 EEELHMANRKCQEMENRIKALHAQIAEKDAMIKVLQQRSRKD 169 (205)
T ss_pred hHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccC
Confidence 556667788888999999999999999999999999966543
No 268
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=82.81 E-value=30 Score=29.91 Aligned_cols=10 Identities=20% Similarity=0.225 Sum_probs=3.5
Q ss_pred HHHHHHHHHH
Q 001692 621 LKTLVSSLEK 630 (1027)
Q Consensus 621 Le~~l~~l~~ 630 (1027)
|+.++++++.
T Consensus 23 Lq~e~eeLke 32 (72)
T PF06005_consen 23 LQMENEELKE 32 (72)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 269
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=82.79 E-value=12 Score=38.89 Aligned_cols=78 Identities=29% Similarity=0.451 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhHHHHHHHHH
Q 001692 610 VVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLE----EKVSDMETENQILR 685 (1027)
Q Consensus 610 ~~~~L~~e~~kLe~~l~~l~~~l~elek~~~ele~~~~~~~~~l~~~~~~~~~l~~~~~~Le----e~l~~le~e~~~L~ 685 (1027)
++..|.+++..++..+.+++.+++.++..+.+- .+..++..++++++.++..++.++..+. +.+..++.++..++
T Consensus 70 ~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~-~eR~~~l~~l~~l~~~~~~l~~el~~~~~~Dp~~i~~~~~~~~~~~ 148 (188)
T PF03962_consen 70 KLEKLQKEIEELEKKIEELEEKIEEAKKGREES-EEREELLEELEELKKELKELKKELEKYSENDPEKIEKLKEEIKIAK 148 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 334444444444444444444444443322222 2333344445555555555555544332 34555555555555
Q ss_pred Hhc
Q 001692 686 QQS 688 (1027)
Q Consensus 686 qq~ 688 (1027)
..+
T Consensus 149 ~~a 151 (188)
T PF03962_consen 149 EAA 151 (188)
T ss_pred HHH
Confidence 433
No 270
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=82.70 E-value=78 Score=34.45 Aligned_cols=45 Identities=16% Similarity=0.225 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001692 643 SKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1027)
Q Consensus 643 e~~~~~~~~~l~~~~~~~~~l~~~~~~Lee~l~~le~e~~~L~qq 687 (1027)
-..+....+++..-.+-++++++++..|+.++..|..+...-+..
T Consensus 185 ~~~N~~m~kei~~~re~i~el~e~I~~L~~eV~~L~~~~~~~Re~ 229 (258)
T PF15397_consen 185 TLENQVMQKEIVQFREEIDELEEEIPQLRAEVEQLQAQAQDPREV 229 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHH
Confidence 344455555555666666667777777777777777777655553
No 271
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=82.69 E-value=59 Score=35.44 Aligned_cols=31 Identities=26% Similarity=0.371 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001692 615 TSENEKLKTLVSSLEKKIDETEKKFEETSKI 645 (1027)
Q Consensus 615 ~~e~~kLe~~l~~l~~~l~elek~~~ele~~ 645 (1027)
+..++.++..+++.+.++.+++.++.+++..
T Consensus 69 ~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~ 99 (251)
T PF11932_consen 69 EVYNEQLERQVASQEQELASLEQQIEQIEET 99 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444443333
No 272
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=82.57 E-value=22 Score=33.71 Aligned_cols=34 Identities=21% Similarity=0.298 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHhhccccc
Q 001692 567 SALQEMQLQFKESKEK---LMKEIEVAKKEAEKVPVV 600 (1027)
Q Consensus 567 ~~l~~le~~l~~~~~~---l~~e~~~~~~~~ee~~~~ 600 (1027)
.+...++.++.....+ +...+....+.++++..+
T Consensus 13 ~q~QqLq~ql~~~~~qk~~le~qL~E~~~al~Ele~l 49 (119)
T COG1382 13 AQLQQLQQQLQKVILQKQQLEAQLKEIEKALEELEKL 49 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3444555555544332 223444444445444333
No 273
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=82.53 E-value=14 Score=38.28 Aligned_cols=32 Identities=25% Similarity=0.309 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001692 616 SENEKLKTLVSSLEKKIDETEKKFEETSKISE 647 (1027)
Q Consensus 616 ~e~~kLe~~l~~l~~~l~elek~~~ele~~~~ 647 (1027)
.++.+++..+.+++.++.+++.+.+.+...++
T Consensus 124 ~~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke 155 (190)
T PF05266_consen 124 AELKELESEIKELEMKILELQRQAAKLKEKKE 155 (190)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555544444444443333
No 274
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=82.20 E-value=1.8e+02 Score=38.21 Aligned_cols=38 Identities=16% Similarity=0.168 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhHHH
Q 001692 950 SIIDSLNTLLSTLKQNFVPPVLVQKIFTQTFSYINVQL 987 (1027)
Q Consensus 950 ~il~~L~~~~~~l~~~~v~~~l~~Q~f~Qlf~~in~~l 987 (1027)
..+..+..+-..+...+++..+...+..++....|..+
T Consensus 740 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~l 777 (908)
T COG0419 740 KALELLEELREKLGKAGLRADILRNLLAQIEAEANEIL 777 (908)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555556666665555555555555555555444
No 275
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=82.14 E-value=71 Score=34.97 Aligned_cols=13 Identities=31% Similarity=0.690 Sum_probs=10.6
Q ss_pred hCCCCccChHHHH
Q 001692 304 AGYPTRKPFDEFV 316 (1027)
Q Consensus 304 ~Gyp~r~~~~~F~ 316 (1027)
-|||--++...|.
T Consensus 3 LGypr~iSmenFr 15 (267)
T PF10234_consen 3 LGYPRLISMENFR 15 (267)
T ss_pred CCCCCCCcHHHcC
Confidence 4999888888775
No 276
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=82.05 E-value=0.43 Score=60.35 Aligned_cols=11 Identities=27% Similarity=0.501 Sum_probs=0.0
Q ss_pred HHHHHHhHHHH
Q 001692 670 LEEKVSDMETE 680 (1027)
Q Consensus 670 Lee~l~~le~e 680 (1027)
|++++..|+..
T Consensus 286 LeEe~~sLq~k 296 (722)
T PF05557_consen 286 LEEEKRSLQRK 296 (722)
T ss_dssp -----------
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 277
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=82.02 E-value=1.3e+02 Score=36.64 Aligned_cols=48 Identities=27% Similarity=0.246 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001692 532 KLEKQVEELTWRLQLEKRMRVDMEEAKTQENAKLQSALQEMQLQFKES 579 (1027)
Q Consensus 532 ~LE~kv~el~~rl~~e~~~~~ele~~~~~e~~~L~~~l~~le~~l~~~ 579 (1027)
.|-.+|.+|+..|...+...+-.|...+.|+.+|+.++++.+...+++
T Consensus 584 ~lvqqv~dLR~~L~~~Eq~aarrEd~~R~Ei~~LqrRlqaaE~R~eel 631 (961)
T KOG4673|consen 584 MLVQQVEDLRQTLSKKEQQAARREDMFRGEIEDLQRRLQAAERRCEEL 631 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555554443333333344445555555555555444443
No 278
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=81.69 E-value=1.4e+02 Score=36.90 Aligned_cols=54 Identities=17% Similarity=0.178 Sum_probs=26.0
Q ss_pred hHHHHHHHhhhccCCCCCCchhHHHHHHH------HhhhhhhhhhhhHHHHHHHHHHHHhh
Q 001692 752 NVDALINCVAKNLGYCNGKPVAAFTIYKC------LLHWKSFEAERTSVFDRLIQMIGSAI 806 (1027)
Q Consensus 752 ~~~~Ll~~i~~~~~~~~~~p~pA~ii~~c------~~~~~~~~~~~~~ll~~i~~~I~~~i 806 (1027)
..+..|..|.+... ..|.|+++-+.-.. +|....++++...++.++...+.+.+
T Consensus 448 ~v~~~l~~l~~~a~-~~Gv~s~~~L~~rf~~v~~~~r~~~l~~~~~~g~~~~~~s~~~S~l 507 (582)
T PF09731_consen 448 LVDAALSSLPPEAA-QRGVPSEAQLRNRFERVAPEVRRASLVPPEGAGLLGHLLSYLFSLL 507 (582)
T ss_pred HHHHHHHhcCHHHh-hCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhee
Confidence 34555555543322 23677776554332 12222233455566666666666643
No 279
>PRK09343 prefoldin subunit beta; Provisional
Probab=81.64 E-value=35 Score=32.71 Aligned_cols=46 Identities=15% Similarity=0.208 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhc
Q 001692 643 SKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQS 688 (1027)
Q Consensus 643 e~~~~~~~~~l~~~~~~~~~l~~~~~~Lee~l~~le~e~~~L~qq~ 688 (1027)
...+..+.++++-.+..+..+++....+++++.+++..+..+-++.
T Consensus 70 ~e~~~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ll~~~ 115 (121)
T PRK09343 70 TKVEKELKERKELLELRSRTLEKQEKKLREKLKELQAKINEMLSKY 115 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444555566666667777788888888888888888887766543
No 280
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=81.39 E-value=33 Score=39.17 Aligned_cols=11 Identities=18% Similarity=0.404 Sum_probs=5.0
Q ss_pred hhhhhHHHHHH
Q 001692 817 YWLSNTSTLLF 827 (1027)
Q Consensus 817 fWLsN~~~Ll~ 827 (1027)
.|=-+..++++
T Consensus 245 ~Wnvd~~r~~~ 255 (459)
T KOG0288|consen 245 LWNVDSLRLRH 255 (459)
T ss_pred eeeccchhhhh
Confidence 44444444444
No 281
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=81.35 E-value=15 Score=36.66 Aligned_cols=25 Identities=8% Similarity=0.295 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHH
Q 001692 661 VQLKTAMHRLEEKVSDMETENQILR 685 (1027)
Q Consensus 661 ~~l~~~~~~Lee~l~~le~e~~~L~ 685 (1027)
.+++++++.|+.++...++.+..++
T Consensus 119 eemQe~i~~L~kev~~~~erl~~~k 143 (201)
T KOG4603|consen 119 EEMQEEIQELKKEVAGYRERLKNIK 143 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555555
No 282
>PRK11281 hypothetical protein; Provisional
Probab=81.00 E-value=1e+02 Score=40.77 Aligned_cols=25 Identities=16% Similarity=0.193 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001692 521 RETGALQAAKNKLEKQVEELTWRLQ 545 (1027)
Q Consensus 521 ~~~~~L~~~k~~LE~kv~el~~rl~ 545 (1027)
++...+++...+..+++.+...+++
T Consensus 80 ~~~~~L~k~l~~Ap~~l~~a~~~Le 104 (1113)
T PRK11281 80 EETEQLKQQLAQAPAKLRQAQAELE 104 (1113)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3444444444444444444444444
No 283
>PRK01156 chromosome segregation protein; Provisional
Probab=80.99 E-value=1.9e+02 Score=37.80 Aligned_cols=33 Identities=12% Similarity=0.271 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001692 654 LEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1027)
Q Consensus 654 ~~~~~~~~~l~~~~~~Lee~l~~le~e~~~L~q 686 (1027)
++...++.+++.++..|+.++..++.++..++.
T Consensus 412 ~e~~~~~~~l~~~i~~l~~~i~~l~~~~~el~~ 444 (895)
T PRK01156 412 NEINVKLQDISSKVSSLNQRIRALRENLDELSR 444 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555566666666666666665555553
No 284
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=80.96 E-value=5 Score=46.88 Aligned_cols=47 Identities=17% Similarity=0.207 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001692 624 LVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRL 670 (1027)
Q Consensus 624 ~l~~l~~~l~elek~~~ele~~~~~~~~~l~~~~~~~~~l~~~~~~L 670 (1027)
.+.+.+.+.+++|+++++++.+.+.+..+.++.++++++++.++..|
T Consensus 70 ALteqQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~L 116 (475)
T PRK13729 70 ATTEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAAL 116 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence 34444555555555555555444433344444444444333333333
No 285
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=80.95 E-value=7.6 Score=39.59 Aligned_cols=24 Identities=38% Similarity=0.487 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 001692 611 VEELTSENEKLKTLVSSLEKKIDE 634 (1027)
Q Consensus 611 ~~~L~~e~~kLe~~l~~l~~~l~e 634 (1027)
+..|..++..|+.++..++..+..
T Consensus 81 i~~L~~el~~l~~~~k~l~~eL~~ 104 (169)
T PF07106_consen 81 IKELREELAELKKEVKSLEAELAS 104 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444555555544444444443
No 286
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=80.86 E-value=1.8e+02 Score=37.53 Aligned_cols=9 Identities=56% Similarity=1.003 Sum_probs=5.5
Q ss_pred CCCCccChH
Q 001692 305 GYPTRKPFD 313 (1027)
Q Consensus 305 Gyp~r~~~~ 313 (1027)
|||.+.+-.
T Consensus 67 g~~i~~~v~ 75 (1141)
T KOG0018|consen 67 GKPIRKPVT 75 (1141)
T ss_pred CCccCCchh
Confidence 666665554
No 287
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=80.84 E-value=36 Score=32.02 Aligned_cols=34 Identities=18% Similarity=0.264 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 001692 650 LKQALEAESKIVQLKTAMHRLEEKVSDMETENQI 683 (1027)
Q Consensus 650 ~~~l~~~~~~~~~l~~~~~~Lee~l~~le~e~~~ 683 (1027)
.++++..+..+..+++....++.++.+++.++..
T Consensus 73 ~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~~ 106 (110)
T TIGR02338 73 KEKKETLELRVKTLQRQEERLREQLKELQEKIQE 106 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444555555555555555544443
No 288
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=80.82 E-value=31 Score=31.78 Aligned_cols=68 Identities=18% Similarity=0.185 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 001692 610 VVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDM 677 (1027)
Q Consensus 610 ~~~~L~~e~~kLe~~l~~l~~~l~elek~~~ele~~~~~~~~~l~~~~~~~~~l~~~~~~Lee~l~~l 677 (1027)
+...|..++.-|+..+-+.+.+..+++..+...+..+++++.+++.+.-...+|.+.+..|++++...
T Consensus 6 eYsKLraQ~~vLKKaVieEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~~~ 73 (102)
T PF10205_consen 6 EYSKLRAQNQVLKKAVIEEQAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELEES 73 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455566666666666666666666666666666666666666666666666666666666666633
No 289
>PF15456 Uds1: Up-regulated During Septation
Probab=80.78 E-value=27 Score=33.68 Aligned_cols=80 Identities=21% Similarity=0.297 Sum_probs=48.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001692 607 DHAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEER-----------LKQALEAESKIVQLKTAMHRLEEKVS 675 (1027)
Q Consensus 607 ~~~~~~~L~~e~~kLe~~l~~l~~~l~elek~~~ele~~~~~~-----------~~~l~~~~~~~~~l~~~~~~Lee~l~ 675 (1027)
..++|+.|.+|...|...++.++.++. ++.++.++-.....+ .+.+.+.++.+......+.++..++.
T Consensus 20 s~eEVe~LKkEl~~L~~R~~~lr~kl~-le~k~RdAa~sl~~l~~~~~~~~~~~~~~~~~~eeel~~~~rk~ee~~~eL~ 98 (124)
T PF15456_consen 20 SFEEVEELKKELRSLDSRLEYLRRKLA-LESKIRDAAHSLSRLYSSSSRRARFSRESSLKAEEELAESDRKCEELAQELW 98 (124)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCCCccccCCCcchHHHHHHHHHHHHhhHHHHHHHHH
Confidence 477899999999999999999999988 666555544333322 01223334444444444444445555
Q ss_pred hHHHHHHHHHHh
Q 001692 676 DMETENQILRQQ 687 (1027)
Q Consensus 676 ~le~e~~~L~qq 687 (1027)
+++......+++
T Consensus 99 ~le~R~~~~~~r 110 (124)
T PF15456_consen 99 KLENRLAEVRQR 110 (124)
T ss_pred HHHHHHHHHHHH
Confidence 555555444443
No 290
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=80.61 E-value=1.3e+02 Score=35.77 Aligned_cols=79 Identities=15% Similarity=0.235 Sum_probs=49.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 001692 607 DHAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILR 685 (1027)
Q Consensus 607 ~~~~~~~L~~e~~kLe~~l~~l~~~l~elek~~~ele~~~~~~~~~l~~~~~~~~~l~~~~~~Lee~l~~le~e~~~L~ 685 (1027)
+...+...+++++.+++.+++..+.+++.+.....++...+.....+.+.+.+...+++.+.+|+..=..-++.+..++
T Consensus 345 e~~~vr~~e~eL~el~~~~~~i~~~~~~~~~~yS~lq~~l~~~~~~l~~i~~~q~~~~e~L~~LrkdEl~Are~l~~~~ 423 (570)
T COG4477 345 ELGSVRKFEKELKELESVLDEILENIEAQEVAYSELQDNLEEIEKALTDIEDEQEKVQEHLTSLRKDELEARENLERLK 423 (570)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777788888888888888877777666666666666666666655555555555555555444333333343333
No 291
>PF15294 Leu_zip: Leucine zipper
Probab=80.60 E-value=60 Score=35.61 Aligned_cols=19 Identities=16% Similarity=0.309 Sum_probs=9.6
Q ss_pred HHHHHHHHhHHHHHHHHHH
Q 001692 668 HRLEEKVSDMETENQILRQ 686 (1027)
Q Consensus 668 ~~Lee~l~~le~e~~~L~q 686 (1027)
..+.+-+.+...++..|+.
T Consensus 256 ~NMk~~ltkKn~QiKeLRk 274 (278)
T PF15294_consen 256 RNMKEILTKKNEQIKELRK 274 (278)
T ss_pred HHhHHHHHhccHHHHHHHH
Confidence 3444445555555555554
No 292
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=79.69 E-value=25 Score=32.42 Aligned_cols=80 Identities=28% Similarity=0.299 Sum_probs=51.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 001692 607 DHAVVEELTSENEKLKTLVSSLEKKIDETE---------KKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDM 677 (1027)
Q Consensus 607 ~~~~~~~L~~e~~kLe~~l~~l~~~l~ele---------k~~~ele~~~~~~~~~l~~~~~~~~~l~~~~~~Lee~l~~l 677 (1027)
+....+.+..+..+|..+++.++..+..+. +.+..|+...+.....+.... ..-+..++..|+.+...+
T Consensus 10 ~~~~~e~~~~e~~~L~~~~~~L~~~~R~~~GedL~~Ls~~eL~~LE~~Le~aL~~VR~rK--~~~l~~~i~~l~~ke~~l 87 (100)
T PF01486_consen 10 WDSQHEELQQEIAKLRKENESLQKELRHLMGEDLESLSLKELQQLEQQLESALKRVRSRK--DQLLMEQIEELKKKEREL 87 (100)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHhhhhhHHHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence 456667777777777777777776655432 344555555554444443333 334667788888888888
Q ss_pred HHHHHHHHHhc
Q 001692 678 ETENQILRQQS 688 (1027)
Q Consensus 678 e~e~~~L~qq~ 688 (1027)
.+++..|+++.
T Consensus 88 ~~en~~L~~~~ 98 (100)
T PF01486_consen 88 EEENNQLRQKI 98 (100)
T ss_pred HHHHHHHHHHh
Confidence 88888888753
No 293
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=79.15 E-value=44 Score=30.77 Aligned_cols=33 Identities=27% Similarity=0.440 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001692 610 VVEELTSENEKLKTLVSSLEKKIDETEKKFEET 642 (1027)
Q Consensus 610 ~~~~L~~e~~kLe~~l~~l~~~l~elek~~~el 642 (1027)
+...+..+...+...+..++..+.+.+....++
T Consensus 6 ~~~~l~~~l~~~~~q~~~l~~~~~~~~~~~~eL 38 (106)
T PF01920_consen 6 KFQELNQQLQQLEQQIQQLERQLRELELTLEEL 38 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444443
No 294
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=79.07 E-value=71 Score=36.60 Aligned_cols=14 Identities=36% Similarity=0.615 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHH
Q 001692 532 KLEKQVEELTWRLQ 545 (1027)
Q Consensus 532 ~LE~kv~el~~rl~ 545 (1027)
..|..+.+++.+|+
T Consensus 256 ~aEqsl~dlQk~Le 269 (575)
T KOG4403|consen 256 RAEQSLEDLQKRLE 269 (575)
T ss_pred HHHHHHHHHHHHHH
Confidence 34555666666665
No 295
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=79.00 E-value=74 Score=34.56 Aligned_cols=25 Identities=24% Similarity=0.469 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001692 613 ELTSENEKLKTLVSSLEKKIDETEK 637 (1027)
Q Consensus 613 ~L~~e~~kLe~~l~~l~~~l~elek 637 (1027)
+..+|++.|++-++.++..+.+..+
T Consensus 121 EARkEIkQLkQvieTmrssL~ekDk 145 (305)
T PF15290_consen 121 EARKEIKQLKQVIETMRSSLAEKDK 145 (305)
T ss_pred HHHHHHHHHHHHHHHHHhhhchhhh
Confidence 4456777777777777766665443
No 296
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=78.85 E-value=1.2e+02 Score=38.02 Aligned_cols=21 Identities=10% Similarity=0.058 Sum_probs=12.6
Q ss_pred CCcccchh-hhhHHHHHHHHHH
Q 001692 811 DNDHMAYW-LSNTSTLLFLLQR 831 (1027)
Q Consensus 811 ~~~~lafW-LsN~~~Ll~~lq~ 831 (1027)
.+..++.| ..++-++..+|+.
T Consensus 479 ~V~~~t~~~V~s~~~v~~ll~~ 500 (670)
T KOG0239|consen 479 MVPLLTVIKVGSSEEVDILLEI 500 (670)
T ss_pred ecccceEEecCCHHHHHHHHHH
Confidence 35556666 6666666666643
No 297
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=78.71 E-value=58 Score=37.78 Aligned_cols=18 Identities=17% Similarity=0.329 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHhHH
Q 001692 661 VQLKTAMHRLEEKVSDME 678 (1027)
Q Consensus 661 ~~l~~~~~~Lee~l~~le 678 (1027)
.++++.+...+..|.++|
T Consensus 301 Rdi~E~~Es~qtRisklE 318 (395)
T PF10267_consen 301 RDIWEVMESCQTRISKLE 318 (395)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 345666666677777777
No 298
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=78.59 E-value=1.3e+02 Score=34.45 Aligned_cols=27 Identities=30% Similarity=0.468 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001692 608 HAVVEELTSENEKLKTLVSSLEKKIDE 634 (1027)
Q Consensus 608 ~~~~~~L~~e~~kLe~~l~~l~~~l~e 634 (1027)
...+..|..|+..|+..+...++.-.+
T Consensus 252 ~~hi~~l~~EveRlrt~l~~Aqk~~~e 278 (552)
T KOG2129|consen 252 KLHIDKLQAEVERLRTYLSRAQKSYQE 278 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566677777777776666655443
No 299
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=78.34 E-value=1.7e+02 Score=35.60 Aligned_cols=25 Identities=28% Similarity=0.385 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001692 521 RETGALQAAKNKLEKQVEELTWRLQ 545 (1027)
Q Consensus 521 ~~~~~L~~~k~~LE~kv~el~~rl~ 545 (1027)
.+...+++....+|.++..|+..+.
T Consensus 189 ~~~~~~~~q~~~le~ki~~lq~a~~ 213 (629)
T KOG0963|consen 189 DEEQNLQEQLEELEKKISSLQSAIE 213 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666667777766655554
No 300
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=78.30 E-value=1.4e+02 Score=35.96 Aligned_cols=64 Identities=11% Similarity=0.140 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001692 609 AVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEE 672 (1027)
Q Consensus 609 ~~~~~L~~e~~kLe~~l~~l~~~l~elek~~~ele~~~~~~~~~l~~~~~~~~~l~~~~~~Lee 672 (1027)
.....++++...|.+++++....+....+...+++.++.+..+.+..........+.+..++++
T Consensus 414 ~~~~~~~e~~~~L~qqlD~kd~~~n~~sqL~~~lk~q~~~qee~~s~~~~~~e~~q~e~~~~Q~ 477 (607)
T KOG0240|consen 414 EEEDILTERIESLYQQLDQKDDQINKQSQLMEKLKEQLLDQEELLSSTRRLYEDIQQELSEIQE 477 (607)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence 3445566666667776666666666665555555555555554444444444444444444433
No 301
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=78.15 E-value=1.5e+02 Score=38.50 Aligned_cols=12 Identities=25% Similarity=0.454 Sum_probs=6.1
Q ss_pred CCCCccChHHHH
Q 001692 305 GYPTRKPFDEFV 316 (1027)
Q Consensus 305 Gyp~r~~~~~F~ 316 (1027)
-|..+++|-|.+
T Consensus 181 EYsvKVSfLELY 192 (1041)
T KOG0243|consen 181 EYSVKVSFLELY 192 (1041)
T ss_pred eEEEEEEehhhh
Confidence 355555555444
No 302
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=78.15 E-value=9 Score=44.87 Aligned_cols=59 Identities=10% Similarity=0.053 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001692 628 LEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1027)
Q Consensus 628 l~~~l~elek~~~ele~~~~~~~~~l~~~~~~~~~l~~~~~~Lee~l~~le~e~~~L~q 686 (1027)
-..++.+.+.+..+++++++++..+++.+..+..+++..+++|+++++.|+.+++.+..
T Consensus 67 nqSALteqQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~a~~~ 125 (475)
T PRK13729 67 RQHATTEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVKALGA 125 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 45566667777777777777766666555555555555555555555555555544444
No 303
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=78.13 E-value=1.2e+02 Score=33.91 Aligned_cols=32 Identities=13% Similarity=0.231 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhc
Q 001692 657 ESKIVQLKTAMHRLEEKVSDMETENQILRQQS 688 (1027)
Q Consensus 657 ~~~~~~l~~~~~~Lee~l~~le~e~~~L~qq~ 688 (1027)
..++..+-.+...|.++|.+|+.+++..+...
T Consensus 218 DvRLkKl~~eke~L~~qv~klk~qLee~~~~~ 249 (302)
T PF09738_consen 218 DVRLKKLADEKEELLEQVRKLKLQLEERQSEG 249 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34566777888888888888888887766533
No 304
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=78.10 E-value=66 Score=30.79 Aligned_cols=32 Identities=25% Similarity=0.419 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 001692 654 LEAESKIVQLKTAMHRLEEKVSDMETENQILR 685 (1027)
Q Consensus 654 ~~~~~~~~~l~~~~~~Lee~l~~le~e~~~L~ 685 (1027)
......+..+..++..|...+..+++.+..+.
T Consensus 77 ~~k~~ei~~l~~~l~~l~~~~~k~e~~l~~~~ 108 (126)
T PF13863_consen 77 EEKEAEIKKLKAELEELKSEISKLEEKLEEYK 108 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555555555443
No 305
>smart00338 BRLZ basic region leucin zipper.
Probab=78.08 E-value=23 Score=29.74 Aligned_cols=49 Identities=22% Similarity=0.334 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhc
Q 001692 640 EETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQS 688 (1027)
Q Consensus 640 ~ele~~~~~~~~~l~~~~~~~~~l~~~~~~Lee~l~~le~e~~~L~qq~ 688 (1027)
....+...+....+..++.++..|+.++..|..++..|+.++..|+++.
T Consensus 15 ~aA~~~R~rKk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 15 EAARRSRERKKAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444455556677778888888888888888888888888877643
No 306
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=78.07 E-value=0.69 Score=58.39 Aligned_cols=8 Identities=38% Similarity=0.721 Sum_probs=0.0
Q ss_pred HHHHHHHH
Q 001692 565 LQSALQEM 572 (1027)
Q Consensus 565 L~~~l~~l 572 (1027)
|+.+++.+
T Consensus 296 LrDElD~l 303 (713)
T PF05622_consen 296 LRDELDEL 303 (713)
T ss_dssp --------
T ss_pred HhhhHHHH
Confidence 33333333
No 307
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=78.02 E-value=0.7 Score=58.48 Aligned_cols=21 Identities=19% Similarity=0.192 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 001692 561 ENAKLQSALQEMQLQFKESKE 581 (1027)
Q Consensus 561 e~~~L~~~l~~le~~l~~~~~ 581 (1027)
+...++-++..|+.++..|..
T Consensus 306 el~~lq~e~~~Le~el~sW~s 326 (722)
T PF05557_consen 306 ELAELQLENEKLEDELNSWES 326 (722)
T ss_dssp ---------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344445555556666666544
No 308
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=78.00 E-value=1.3e+02 Score=33.98 Aligned_cols=23 Identities=22% Similarity=0.518 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 001692 560 QENAKLQSALQEMQLQFKESKEK 582 (1027)
Q Consensus 560 ~e~~~L~~~l~~le~~l~~~~~~ 582 (1027)
..+..|..+++++...+.+++..
T Consensus 79 e~Nk~L~~Ev~~Lrqkl~E~qGD 101 (319)
T PF09789_consen 79 EQNKKLKEEVEELRQKLNEAQGD 101 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHhch
Confidence 44555555555555555555444
No 309
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=77.99 E-value=21 Score=41.82 Aligned_cols=81 Identities=15% Similarity=0.193 Sum_probs=48.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 001692 607 DHAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEA-ESKIVQLKTAMHRLEEKVSDMETENQILR 685 (1027)
Q Consensus 607 ~~~~~~~L~~e~~kLe~~l~~l~~~l~elek~~~ele~~~~~~~~~l~~~-~~~~~~l~~~~~~Lee~l~~le~e~~~L~ 685 (1027)
..+.+..|-.+.+.++.+++.+...++.+.++.+.|++.......++..+ +..-.+++.+...|++++..++..+..|+
T Consensus 57 P~DTlrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l~ 136 (472)
T TIGR03752 57 PADTLRTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQLQ 136 (472)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777777777777777777777777777776666555555555332 22233445555555555555555555554
Q ss_pred Hh
Q 001692 686 QQ 687 (1027)
Q Consensus 686 qq 687 (1027)
.+
T Consensus 137 ~~ 138 (472)
T TIGR03752 137 RR 138 (472)
T ss_pred HH
Confidence 44
No 310
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=77.48 E-value=69 Score=30.66 Aligned_cols=62 Identities=26% Similarity=0.406 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 001692 624 LVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILR 685 (1027)
Q Consensus 624 ~l~~l~~~l~elek~~~ele~~~~~~~~~l~~~~~~~~~l~~~~~~Lee~l~~le~e~~~L~ 685 (1027)
-+.+-..+.....+...+-.+.......++..+...+..++..+..+++.+.....=-.-|.
T Consensus 54 flken~~k~~rA~k~a~~e~k~~~~k~~ei~~l~~~l~~l~~~~~k~e~~l~~~~~Y~~fL~ 115 (126)
T PF13863_consen 54 FLKENEAKRERAEKRAEEEKKKKEEKEAEIKKLKAELEELKSEISKLEEKLEEYKKYEEFLE 115 (126)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333334444444444445555556666666666666666666665544333333
No 311
>PF13166 AAA_13: AAA domain
Probab=77.19 E-value=2.1e+02 Score=36.20 Aligned_cols=177 Identities=23% Similarity=0.262 Sum_probs=0.0
Q ss_pred HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001692 509 ARRELRKL--KMAARETGALQAAKNKLEKQVEELTWRLQLEKRMRVDMEEAKTQENAKLQSALQEMQLQFKESKEKLMKE 586 (1027)
Q Consensus 509 arkel~~l--~~~a~~~~~L~~~k~~LE~kv~el~~rl~~e~~~~~ele~~~~~e~~~L~~~l~~le~~l~~~~~~l~~e 586 (1027)
++.++... .........+......++..+..+...+..-... .........+...+...++.+...++.....+..+
T Consensus 270 ~~~~l~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~L~~K 348 (712)
T PF13166_consen 270 RKERLEKYFDEEYEKLIEELEKAIKKLEKAIENIIEQLESILSE-NDFYEEFEEDKEELKSAIEALKEELEELKKALEKK 348 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHH
Q 001692 587 IEVAKKEAEKVPVVQEVPVIDHAVVEELTSENEKLKTLVSSLEKKIDETEKKFEE-----TSKISEERLKQALEAESKIV 661 (1027)
Q Consensus 587 ~~~~~~~~ee~~~~~e~~~~~~~~~~~L~~e~~kLe~~l~~l~~~l~elek~~~e-----le~~~~~~~~~l~~~~~~~~ 661 (1027)
...-.. .-+...+.+....-...+..++..+......++.+.....+++..+.. ..........++...+..+.
T Consensus 349 ~~~~~~-~~~~~~~~~~~~~l~~~i~~~n~~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~ 427 (712)
T PF13166_consen 349 IKNPSS-PIELEEINEDIDELNSIIDELNELIEEHNEKIDNLKKEQNELKDKLWLHLIAKLKEDIEEYQKEIKELEKEIN 427 (712)
T ss_pred Hhcccc-cccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001692 662 QLKTAMHRLEEKVSDMETENQILRQQ 687 (1027)
Q Consensus 662 ~l~~~~~~Lee~l~~le~e~~~L~qq 687 (1027)
.++..+..++..+..++.++..|+.+
T Consensus 428 ~~~~~~~~~~~~~~~~~~~i~~l~~~ 453 (712)
T PF13166_consen 428 SLEKKLKKAKEEIKKIEKEIKELEAQ 453 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
No 312
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=76.97 E-value=1.1e+02 Score=32.61 Aligned_cols=23 Identities=13% Similarity=0.261 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 001692 560 QENAKLQSALQEMQLQFKESKEK 582 (1027)
Q Consensus 560 ~e~~~L~~~l~~le~~l~~~~~~ 582 (1027)
.....++.++++.+..+.+++..
T Consensus 51 a~~~~le~~~~~~~~~~~~~~~~ 73 (221)
T PF04012_consen 51 ANQKRLERKLDEAEEEAEKWEKQ 73 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455566666666666666554
No 313
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=76.77 E-value=62 Score=33.68 Aligned_cols=49 Identities=24% Similarity=0.302 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001692 624 LVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEE 672 (1027)
Q Consensus 624 ~l~~l~~~l~elek~~~ele~~~~~~~~~l~~~~~~~~~l~~~~~~Lee 672 (1027)
+...++..+.+++.++.+++++...+....+.....+..++.....+++
T Consensus 125 ~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~ 173 (190)
T PF05266_consen 125 ELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKE 173 (190)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444333333333333333333333333333
No 314
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=76.73 E-value=2.5e+02 Score=36.79 Aligned_cols=29 Identities=24% Similarity=0.449 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 001692 656 AESKIVQLKTAMHRLEEKVSDMETENQIL 684 (1027)
Q Consensus 656 ~~~~~~~l~~~~~~Lee~l~~le~e~~~L 684 (1027)
.+.....++..+..+++.+..++..++.+
T Consensus 415 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 443 (908)
T COG0419 415 LEKELEELERELEELEEEIKKLEEQINQL 443 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444444443
No 315
>KOG2685 consensus Cystoskeletal protein Tektin [Cytoskeleton]
Probab=76.43 E-value=1.5e+02 Score=34.16 Aligned_cols=49 Identities=14% Similarity=0.180 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001692 609 AVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAE 657 (1027)
Q Consensus 609 ~~~~~L~~e~~kLe~~l~~l~~~l~elek~~~ele~~~~~~~~~l~~~~ 657 (1027)
..+.+.+..+.+|+.++....+.+.+.+..+..+++.+....+-++.++
T Consensus 278 ~ri~etqdar~kL~~ql~k~leEi~~~e~~I~~le~airdK~~pLKVAq 326 (421)
T KOG2685|consen 278 KRIRETQDARNKLEWQLAKTLEEIADAENNIEALERAIRDKEGPLKVAQ 326 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcccccHHHHH
Confidence 4455666666666666666666666666667666666666555544433
No 316
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=76.29 E-value=1.7e+02 Score=34.63 Aligned_cols=179 Identities=10% Similarity=0.125 Sum_probs=0.0
Q ss_pred hHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHH
Q 001692 495 KAAITTQCAWRGKVARRELRKLKMAARETGALQAAKNKLEKQVEELTWRLQLEKRMRVDMEEAKT---------QENAKL 565 (1027)
Q Consensus 495 ~a~i~iQ~~~R~~~arkel~~l~~~a~~~~~L~~~k~~LE~kv~el~~rl~~e~~~~~ele~~~~---------~e~~~L 565 (1027)
.+..........+.....-.+.........-+..+..+++.++.+.+.++. .-. ......
T Consensus 145 ~A~~i~n~~~~~y~~~~~~~~~~~~~~~~~fl~~ql~~~~~~l~~ae~~l~-----------~fr~~~~i~~~~~~~~~~ 213 (444)
T TIGR03017 145 FAATVANAFAQAYIDTNIELKVEPAQKAALWFVQQIAALREDLARAQSKLS-----------AYQQEKGIVSSDERLDVE 213 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHcCCcccCcccchH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001692 566 QSALQEMQLQFKESKEKLMKEIEVAKKEAEKVPVVQEVPVI-DHAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSK 644 (1027)
Q Consensus 566 ~~~l~~le~~l~~~~~~l~~e~~~~~~~~ee~~~~~e~~~~-~~~~~~~L~~e~~kLe~~l~~l~~~l~elek~~~ele~ 644 (1027)
..++.+++.++...+.+. ................+.. ....+..+..++..++.++.++.....+---....++.
T Consensus 214 ~~~l~~l~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~le~~l~~l~~~y~~~hP~v~~l~~ 289 (444)
T TIGR03017 214 RARLNELSAQLVAAQAQV----MDASSKEGGSSGKDALPEVIANPIIQNLKTDIARAESKLAELSQRLGPNHPQYKRAQA 289 (444)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHhccCCcccchhhhcChHHHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhHHHHHHHHHHhc
Q 001692 645 ISEERLKQALEAESKI-VQLKTAMHRLEEKVSDMETENQILRQQS 688 (1027)
Q Consensus 645 ~~~~~~~~l~~~~~~~-~~l~~~~~~Lee~l~~le~e~~~L~qq~ 688 (1027)
+.+.+...+...-.++ ..+..+...+..++..++..+..++++.
T Consensus 290 ~i~~l~~~l~~e~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 334 (444)
T TIGR03017 290 EINSLKSQLNAEIKKVTSSVGTNSRILKQREAELREALENQKAKV 334 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 317
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=76.11 E-value=1.8e+02 Score=34.76 Aligned_cols=25 Identities=20% Similarity=0.468 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHH
Q 001692 662 QLKTAMHRLEEKVSDMETENQILRQ 686 (1027)
Q Consensus 662 ~l~~~~~~Lee~l~~le~e~~~L~q 686 (1027)
....++...+.++..++.++...+.
T Consensus 288 ~~~~~l~~~~~~l~~~~~~l~~a~~ 312 (457)
T TIGR01000 288 KVKQEITDLNQKLLELESKIKSLKE 312 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555555544444
No 318
>PRK04406 hypothetical protein; Provisional
Probab=76.02 E-value=21 Score=31.13 Aligned_cols=22 Identities=14% Similarity=0.300 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHhHHHHHHHH
Q 001692 663 LKTAMHRLEEKVSDMETENQIL 684 (1027)
Q Consensus 663 l~~~~~~Lee~l~~le~e~~~L 684 (1027)
|.+.+...+.+|..|+.++..|
T Consensus 30 LN~~v~~Qq~~I~~L~~ql~~L 51 (75)
T PRK04406 30 LNDALSQQQLLITKMQDQMKYV 51 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333334444444433
No 319
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=75.91 E-value=46 Score=30.69 Aligned_cols=72 Identities=19% Similarity=0.250 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 001692 611 VEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEER---LKQALEAESKIVQLKTAMHRLEEKVSDMETENQ 682 (1027)
Q Consensus 611 ~~~L~~e~~kLe~~l~~l~~~l~elek~~~ele~~~~~~---~~~l~~~~~~~~~l~~~~~~Lee~l~~le~e~~ 682 (1027)
..-|++.+...-..+.++......+.....+++....++ ..++.+.+.++..|+..+..|++=.+.||...+
T Consensus 23 ~~LLe~mN~~~~~kY~~~~~~~~~l~~~~~~l~~k~~~l~~~l~~Id~Ie~~V~~LE~~v~~LD~ysk~LE~k~k 97 (99)
T PF10046_consen 23 YNLLENMNKATSLKYKKMKDIAAGLEKNLEDLNQKYEELQPYLQQIDQIEEQVTELEQTVYELDEYSKELESKFK 97 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334444444444455555555555555444444433332 333444555666666666666666666665543
No 320
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=75.72 E-value=39 Score=35.19 Aligned_cols=73 Identities=19% Similarity=0.245 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcc
Q 001692 617 ENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQSL 689 (1027)
Q Consensus 617 e~~kLe~~l~~l~~~l~elek~~~ele~~~~~~~~~l~~~~~~~~~l~~~~~~Lee~l~~le~e~~~L~qq~~ 689 (1027)
++-.|+..+.++...+...+....++.........+++..+..+.....+..-|++++..++.|+..|+....
T Consensus 32 Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLrekl~~le~El~~Lr~~l~ 104 (202)
T PF06818_consen 32 EIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNEAELLREKLGQLEAELAELREELA 104 (202)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhhhhhhhHHHHHHHHHHHH
Confidence 4444555555555555555555556655555555566666666666666777777778888888877777543
No 321
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=75.70 E-value=1.1e+02 Score=37.15 Aligned_cols=167 Identities=18% Similarity=0.195 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------
Q 001692 522 ETGALQAAKNKLEKQVEELTWRLQLEKRMRVDMEEAKTQENAKLQSALQEMQLQFKESKEKLMK---------------- 585 (1027)
Q Consensus 522 ~~~~L~~~k~~LE~kv~el~~rl~~e~~~~~ele~~~~~e~~~L~~~l~~le~~l~~~~~~l~~---------------- 585 (1027)
+...++-...+++..+..+..+++.-+..+...-.....-..-....++.|+..+..++.++..
T Consensus 110 e~a~lk~~l~e~~~El~~l~~~l~~l~~~~~~~~~~~~~~~~l~~~~~~sL~ekl~lld~al~~~~~~~~~~~~~fl~rt 189 (511)
T PF09787_consen 110 ELAVLKIRLQELDQELRRLRRQLEELQNEKSRILSDESTVSRLQNGAPRSLQEKLSLLDEALKREDGNAITAVVEFLKRT 189 (511)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCccHHHHHHHHHHHH
Q ss_pred -HHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Q 001692 586 -EIEVAKKEAEKVPVVQEVPVIDHAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESK----- 659 (1027)
Q Consensus 586 -e~~~~~~~~ee~~~~~e~~~~~~~~~~~L~~e~~kLe~~l~~l~~~l~elek~~~ele~~~~~~~~~l~~~~~~----- 659 (1027)
+.+...+.+++.............+...+...++-++......+..+.+-+.+....-..++++...|+..-..
T Consensus 190 l~~e~~~~~L~~~~~A~~~~~~~l~~~~e~~~~l~l~~~~~~~~~~el~~Yk~kA~~iLq~kEklI~~LK~~~~~~~~~~ 269 (511)
T PF09787_consen 190 LKKEIERQELEERPKALRHYIEYLRESGELQEQLELLKAEGESEEAELQQYKQKAQRILQSKEKLIESLKEGCLEEGFDS 269 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhccccccccc
Q ss_pred ------HHHHHHHHHHHHHHHHhHHHHHHHHHHhc
Q 001692 660 ------IVQLKTAMHRLEEKVSDMETENQILRQQS 688 (1027)
Q Consensus 660 ------~~~l~~~~~~Lee~l~~le~e~~~L~qq~ 688 (1027)
+..+..+...+++++..++.+++.++-+.
T Consensus 270 ~~~~~el~~l~~E~~~~~ee~~~l~~Qi~~l~~e~ 304 (511)
T PF09787_consen 270 STNSIELEELKQERDHLQEEIQLLERQIEQLRAEL 304 (511)
T ss_pred ccchhcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
No 322
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=75.68 E-value=1.9e+02 Score=34.74 Aligned_cols=7 Identities=43% Similarity=0.942 Sum_probs=2.9
Q ss_pred ccceeee
Q 001692 352 GKTKVFL 358 (1027)
Q Consensus 352 G~TkVFl 358 (1027)
|+|.|++
T Consensus 152 G~tqI~I 158 (489)
T PF05262_consen 152 GKTQIVI 158 (489)
T ss_pred CCceEEE
Confidence 4444443
No 323
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=75.66 E-value=24 Score=32.96 Aligned_cols=71 Identities=27% Similarity=0.268 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001692 616 SENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1027)
Q Consensus 616 ~e~~kLe~~l~~l~~~l~elek~~~ele~~~~~~~~~l~~~~~~~~~l~~~~~~Lee~l~~le~e~~~L~qq 687 (1027)
....++.+...++++++.+.+++.-.+.+...++..++.++.++...-.. -..+..++..++.+++..+++
T Consensus 3 ~~~~~~~~~~~~l~~~L~~v~~~~l~l~~~n~el~~el~~l~~~~~~~~~-~~~~~~~l~~~~~~lk~~r~~ 73 (106)
T PF05837_consen 3 LEILNLQQESRSLQEKLSDVEKKRLRLKRRNQELAQELLELAEKQKSQRE-DEELSEKLEKLEKELKKSRQR 73 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-chHHHHHHHHHHHHHHHHHHH
Confidence 45566667777777777777777777777777777777665555443322 344556666677766666554
No 324
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=75.57 E-value=1.3e+02 Score=32.96 Aligned_cols=23 Identities=22% Similarity=0.280 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 001692 614 LTSENEKLKTLVSSLEKKIDETE 636 (1027)
Q Consensus 614 L~~e~~kLe~~l~~l~~~l~ele 636 (1027)
|+..+++-+.+++-.++++..++
T Consensus 195 Le~KIekkk~ELER~qKRL~sLq 217 (267)
T PF10234_consen 195 LEAKIEKKKQELERNQKRLQSLQ 217 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444433
No 325
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=75.56 E-value=28 Score=29.14 Aligned_cols=41 Identities=20% Similarity=0.323 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001692 646 SEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1027)
Q Consensus 646 ~~~~~~~l~~~~~~~~~l~~~~~~Lee~l~~le~e~~~L~q 686 (1027)
.......++.++..+..|+.+...|..++..|+.++..|..
T Consensus 21 R~RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~ 61 (64)
T PF00170_consen 21 RQRKKQYIEELEEKVEELESENEELKKELEQLKKEIQSLKS 61 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344445556666666666666666666666666666654
No 326
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=75.13 E-value=87 Score=36.20 Aligned_cols=31 Identities=13% Similarity=0.314 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001692 656 AESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1027)
Q Consensus 656 ~~~~~~~l~~~~~~Lee~l~~le~e~~~L~q 686 (1027)
...+.-..+++++.++.++.--+..+..|+.
T Consensus 237 ~~~q~~~~~del~Sle~q~~~s~~qldkL~k 267 (447)
T KOG2751|consen 237 FQRQLIEHQDELDSLEAQIEYSQAQLDKLRK 267 (447)
T ss_pred HHHhhhcccchHHHHHHHHHHHHHHHHHHHh
Confidence 3444445566666666666655555555554
No 327
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=75.09 E-value=3.3 Score=38.11 Aligned_cols=75 Identities=17% Similarity=0.239 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001692 608 HAVVEELTSENEKLKTLVSSLEKKI-DETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1027)
Q Consensus 608 ~~~~~~L~~e~~kLe~~l~~l~~~l-~elek~~~ele~~~~~~~~~l~~~~~~~~~l~~~~~~Lee~l~~le~e~~~L~q 686 (1027)
......+...+..++.++++|-..+ ++.-+..+..+++...+ +.+...++..+.+.+..+..++.++..|+.
T Consensus 7 ~~~r~~ae~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~-------e~k~~~le~~l~e~~~~l~~lq~qL~~LK~ 79 (100)
T PF06428_consen 7 RERREEAEQEKEQIESELEELTASLFEEANKMVADARRERAAL-------EEKNEQLEKQLKEKEALLESLQAQLKELKT 79 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHCTTHHCHCCCHCTSSSSHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556667777777777777766 44445555554444433 333334444444455555555555555555
Q ss_pred hcc
Q 001692 687 QSL 689 (1027)
Q Consensus 687 q~~ 689 (1027)
...
T Consensus 80 v~~ 82 (100)
T PF06428_consen 80 VME 82 (100)
T ss_dssp CTT
T ss_pred HHH
Confidence 443
No 328
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=74.75 E-value=68 Score=36.73 Aligned_cols=15 Identities=13% Similarity=0.264 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHH
Q 001692 531 NKLEKQVEELTWRLQ 545 (1027)
Q Consensus 531 ~~LE~kv~el~~rl~ 545 (1027)
.+.+.+++++..++.
T Consensus 9 s~~dqr~~~~~~~la 23 (459)
T KOG0288|consen 9 SENDQRLIDLNTELA 23 (459)
T ss_pred hhhhhHHHHHHHHHH
Confidence 334444444444433
No 329
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=74.70 E-value=1.4e+02 Score=32.79 Aligned_cols=67 Identities=16% Similarity=0.286 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 001692 612 EELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDME 678 (1027)
Q Consensus 612 ~~L~~e~~kLe~~l~~l~~~l~elek~~~ele~~~~~~~~~l~~~~~~~~~l~~~~~~Lee~l~~le 678 (1027)
..+...+......+.+++..+.+......+.+.-.......+++.+.+..++++......+.|..-+
T Consensus 181 ~~i~~~L~~~~~kL~Dl~~~l~eA~~~~~ea~~ln~~n~~~l~~~~~k~~~l~~~~~~~~~~L~~a~ 247 (264)
T PF06008_consen 181 EAIRDDLNDYNAKLQDLRDLLNEAQNKTREAEDLNRANQKNLEDLEKKKQELSEQQNEVSETLKEAE 247 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444555555555555555555555555555554555555555555555555555544444433
No 330
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=74.66 E-value=2.1e+02 Score=34.87 Aligned_cols=74 Identities=19% Similarity=0.226 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 001692 608 HAVVEELTSENEKLKTLVSSLEKKIDE-------TEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETE 680 (1027)
Q Consensus 608 ~~~~~~L~~e~~kLe~~l~~l~~~l~e-------lek~~~ele~~~~~~~~~l~~~~~~~~~l~~~~~~Lee~l~~le~e 680 (1027)
...+..|..++.+++.+++.....-.+ +...+.++..+.+....+...++..+..+..++...+..+...+..
T Consensus 336 ~~~v~~L~~eL~~~r~eLea~~~~e~~~k~~~~~l~~~Lqql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~i~t~E~r 415 (522)
T PF05701_consen 336 SSEVSSLEAELNKTRSELEAAKAEEEKAKEAMSELPKALQQLSSEAEEAKKEAEEAKEEVEKAKEEAEQTKAAIKTAEER 415 (522)
T ss_pred HhHHhhHHHHHHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666666554433332 3333333333333333333333334444444444443333333333
Q ss_pred H
Q 001692 681 N 681 (1027)
Q Consensus 681 ~ 681 (1027)
+
T Consensus 416 L 416 (522)
T PF05701_consen 416 L 416 (522)
T ss_pred H
Confidence 3
No 331
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=74.44 E-value=53 Score=30.52 Aligned_cols=12 Identities=33% Similarity=0.457 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHH
Q 001692 568 ALQEMQLQFKES 579 (1027)
Q Consensus 568 ~l~~le~~l~~~ 579 (1027)
.++.++.++..+
T Consensus 7 ~~q~l~~~~~~l 18 (105)
T cd00632 7 QLQQLQQQLQAY 18 (105)
T ss_pred HHHHHHHHHHHH
Confidence 344444444444
No 332
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=74.39 E-value=9.5 Score=34.37 Aligned_cols=72 Identities=19% Similarity=0.185 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001692 616 SENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQA----LEAESKIVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1027)
Q Consensus 616 ~e~~kLe~~l~~l~~~l~elek~~~ele~~~~~~~~~l----~~~~~~~~~l~~~~~~Lee~l~~le~e~~~L~qq 687 (1027)
.....|++++..|++.+.+.......|++.......-+ ...-.++.++=.++.-+|.+|..|+..+..|..+
T Consensus 8 ~~r~~LeqeV~~Lq~~L~~E~~~r~aLe~al~~~~~~~~~~~~~lp~~~keLL~EIA~lE~eV~~LE~~v~~L~~~ 83 (88)
T PF14389_consen 8 ERRSALEQEVAELQKQLQEEQDLRRALEKALGRSSGSLPSSPSSLPKKAKELLEEIALLEAEVAKLEQKVLSLYRQ 83 (88)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666677777777776666666666554322211 1233355566666667777777777766666544
No 333
>PRK04406 hypothetical protein; Provisional
Probab=74.28 E-value=25 Score=30.64 Aligned_cols=22 Identities=27% Similarity=0.371 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 001692 621 LKTLVSSLEKKIDETEKKFEET 642 (1027)
Q Consensus 621 Le~~l~~l~~~l~elek~~~el 642 (1027)
++..+.+|+.++.-.+..+.+|
T Consensus 9 le~Ri~~LE~~lAfQE~tIe~L 30 (75)
T PRK04406 9 LEERINDLECQLAFQEQTIEEL 30 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333433333333333333
No 334
>PLN02939 transferase, transferring glycosyl groups
Probab=74.18 E-value=2.8e+02 Score=36.12 Aligned_cols=21 Identities=24% Similarity=0.335 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 001692 559 TQENAKLQSALQEMQLQFKES 579 (1027)
Q Consensus 559 ~~e~~~L~~~l~~le~~l~~~ 579 (1027)
..|+.-|+.+++.++.++.+.
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~ 252 (977)
T PLN02939 232 KEENMLLKDDIQFLKAELIEV 252 (977)
T ss_pred HHHhHHHHHHHHHHHHHHHHH
Confidence 356666777777777666554
No 335
>PTZ00121 MAEBL; Provisional
Probab=74.16 E-value=3.2e+02 Score=36.73 Aligned_cols=36 Identities=17% Similarity=0.262 Sum_probs=20.0
Q ss_pred HHHHHHhCCCCHHHH---HHHHHHHHHhhhHHHhHhhhh
Q 001692 958 LLSTLKQNFVPPVLV---QKIFTQTFSYINVQLFNSLLL 993 (1027)
Q Consensus 958 ~~~~l~~~~v~~~l~---~Q~f~Qlf~~in~~lfN~Ll~ 993 (1027)
++++|+.-+-+|... .+=|+-+.||-++-+|=.||+
T Consensus 1993 YynCmk~EF~dp~Y~CF~K~~fS~~~YfAggGii~ilLl 2031 (2084)
T PTZ00121 1993 YYDCMKEEFADKDYKCFKKKEFSNMAYFAGAGIVLILLF 2031 (2084)
T ss_pred HHhhHHhhccCcchhhhcccCcccceeeccccHHHHHHH
Confidence 566666666665543 344555666666555555443
No 336
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=74.08 E-value=25 Score=36.58 Aligned_cols=15 Identities=20% Similarity=0.381 Sum_probs=5.5
Q ss_pred HHHHhHHHHHHHHHH
Q 001692 672 EKVSDMETENQILRQ 686 (1027)
Q Consensus 672 e~l~~le~e~~~L~q 686 (1027)
+++++.+.+.+.|++
T Consensus 168 ~el~~~~~~~~~Lkk 182 (192)
T PF05529_consen 168 KELEKKEKEIEALKK 182 (192)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 337
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=74.01 E-value=1.4e+02 Score=36.16 Aligned_cols=19 Identities=11% Similarity=0.046 Sum_probs=11.5
Q ss_pred hhHHhhchhHHHHHHhhhh
Q 001692 1003 GEYVKAGLAELELWCCQAK 1021 (1027)
Q Consensus 1003 g~qIr~nls~Le~W~~~~~ 1021 (1027)
-+-++.-=+++-+|+++-.
T Consensus 709 d~Vv~WTnhrvmeWLrsiD 727 (861)
T KOG1899|consen 709 DVVVRWTNHRVMEWLRSID 727 (861)
T ss_pred hHHHHhhhHHHHHHHHhcc
Confidence 3445555567777777654
No 338
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=73.97 E-value=2.5e+02 Score=35.52 Aligned_cols=23 Identities=0% Similarity=0.049 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 001692 436 YLAKKAYKDMCFSAVCIQTGMRG 458 (1027)
Q Consensus 436 ~~~rk~y~~~r~a~~~iQs~~Rg 458 (1027)
+..|..+.+.+.+.-.+++.+..
T Consensus 553 ~r~rq~~~~~r~~ld~leaa~e~ 575 (984)
T COG4717 553 SRIRQHWQQLRKALDQLEAAYEA 575 (984)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666666555555443
No 339
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=73.93 E-value=18 Score=30.97 Aligned_cols=33 Identities=15% Similarity=0.373 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhc
Q 001692 656 AESKIVQLKTAMHRLEEKVSDMETENQILRQQS 688 (1027)
Q Consensus 656 ~~~~~~~l~~~~~~Lee~l~~le~e~~~L~qq~ 688 (1027)
.+..+++|.+.+.+...+|..|+.++..|..+.
T Consensus 16 qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl 48 (69)
T PF04102_consen 16 QEDTIEELNDVVTEQQRQIDRLQRQLRLLRERL 48 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444455555555555555443
No 340
>PF14992 TMCO5: TMCO5 family
Probab=73.61 E-value=1.1e+02 Score=33.55 Aligned_cols=12 Identities=42% Similarity=0.678 Sum_probs=4.7
Q ss_pred HHHHHHHHhHHH
Q 001692 668 HRLEEKVSDMET 679 (1027)
Q Consensus 668 ~~Lee~l~~le~ 679 (1027)
..+++.+.++++
T Consensus 154 ~klkE~L~rmE~ 165 (280)
T PF14992_consen 154 KKLKEKLRRMEE 165 (280)
T ss_pred HHHHHHHHHHHH
Confidence 333444433333
No 341
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=73.58 E-value=1.3e+02 Score=32.13 Aligned_cols=22 Identities=27% Similarity=0.379 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 001692 561 ENAKLQSALQEMQLQFKESKEK 582 (1027)
Q Consensus 561 e~~~L~~~l~~le~~l~~~~~~ 582 (1027)
....++.+++.++...++++..
T Consensus 53 ~~k~~e~~~~~~~~~~~k~e~~ 74 (225)
T COG1842 53 RQKQLERKLEEAQARAEKLEEK 74 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555443
No 342
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=73.26 E-value=2.4e+02 Score=34.98 Aligned_cols=173 Identities=14% Similarity=0.174 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001692 516 LKMAARETGALQAAKNKLEKQVEELTWRLQLEKRMRV---DMEEAKTQENAKLQSALQEMQLQFKESKEKLMKEIEVAKK 592 (1027)
Q Consensus 516 l~~~a~~~~~L~~~k~~LE~kv~el~~rl~~e~~~~~---ele~~~~~e~~~L~~~l~~le~~l~~~~~~l~~e~~~~~~ 592 (1027)
+.++.....+|.......|+++.++...+.+....-. +-+....+....+...+++|..+..+-..+...-....++
T Consensus 56 ve~a~~~~~~L~~~ia~~eael~~l~s~l~~~~~~~~~~~k~e~tLke~l~~l~~~le~lr~qk~eR~~ef~el~~qie~ 135 (660)
T KOG4302|consen 56 VEEASESKARLLQEIAVIEAELNDLCSALGEPSIIGEISDKIEGTLKEQLESLKPYLEGLRKQKDERRAEFKELYHQIEK 135 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455566666677777777777776653221111 0111222344444444444444444333332221122222
Q ss_pred Hhhccc--------cccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHH-
Q 001692 593 EAEKVP--------VVQEVPVIDHAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISE--------ERLKQALE- 655 (1027)
Q Consensus 593 ~~ee~~--------~~~e~~~~~~~~~~~L~~e~~kLe~~l~~l~~~l~elek~~~ele~~~~--------~~~~~l~~- 655 (1027)
..+++. .+.+....-..+++++...+..|+++..+=.+++.+....+..+-..+. +....|..
T Consensus 136 l~~~l~g~~~~~~~~~~D~~dlsl~kLeelr~~L~~L~~ek~~Rlekv~~~~~~I~~l~~~Lg~~~~~~vt~~~~sL~~~ 215 (660)
T KOG4302|consen 136 LCEELGGPEDLPSFLIADESDLSLEKLEELREHLNELQKEKSDRLEKVLELKEEIKSLCSVLGLDFSMTVTDVEPSLVDH 215 (660)
T ss_pred HHHHhcCCccCCcccccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccchhhhhhhhhhc
Confidence 222220 0011111234556666666666666555555555554444444332211 11111111
Q ss_pred --------HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhc
Q 001692 656 --------AESKIVQLKTAMHRLEEKVSDMETENQILRQQS 688 (1027)
Q Consensus 656 --------~~~~~~~l~~~~~~Lee~l~~le~e~~~L~qq~ 688 (1027)
..+.++.|...+..|+++..+.-..++.|..+.
T Consensus 216 ~~~~~~~is~etl~~L~~~v~~l~~~k~qr~~kl~~l~~~~ 256 (660)
T KOG4302|consen 216 DGEQSRSISDETLDRLDKMVKKLKEEKKQRLQKLQDLRTKL 256 (660)
T ss_pred cCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233444555555555555555555555555443
No 343
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=73.02 E-value=1.2e+02 Score=31.47 Aligned_cols=22 Identities=36% Similarity=0.462 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 001692 617 ENEKLKTLVSSLEKKIDETEKK 638 (1027)
Q Consensus 617 e~~kLe~~l~~l~~~l~elek~ 638 (1027)
++..|+.+..+++..+.+++.+
T Consensus 128 ~i~~L~~e~~~L~~~~~~l~~~ 149 (189)
T PF10211_consen 128 EIEELEEEKEELEKQVQELKNK 149 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 344
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=72.89 E-value=2.3e+02 Score=34.50 Aligned_cols=28 Identities=11% Similarity=0.292 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001692 659 KIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1027)
Q Consensus 659 ~~~~l~~~~~~Lee~l~~le~e~~~L~q 686 (1027)
.+..|+.++..+..++...=.++...|+
T Consensus 343 ~~~~Le~~~~~l~~~~~~~A~~Ls~~R~ 370 (557)
T COG0497 343 SLEALEKEVKKLKAELLEAAEALSAIRK 370 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444443
No 345
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=72.79 E-value=2.3e+02 Score=34.51 Aligned_cols=13 Identities=38% Similarity=0.225 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHHH
Q 001692 615 TSENEKLKTLVSS 627 (1027)
Q Consensus 615 ~~e~~kLe~~l~~ 627 (1027)
..++.+.+..+..
T Consensus 315 ~~ELe~~K~el~~ 327 (522)
T PF05701_consen 315 RSELEKEKEELER 327 (522)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 346
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=72.76 E-value=47 Score=33.41 Aligned_cols=81 Identities=21% Similarity=0.312 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhc
Q 001692 609 AVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQS 688 (1027)
Q Consensus 609 ~~~~~L~~e~~kLe~~l~~l~~~l~elek~~~ele~~~~~~~~~l~~~~~~~~~l~~~~~~Lee~l~~le~e~~~L~qq~ 688 (1027)
+-++.+...+...+.++..++...+.+..+...-+......+.++...+ +.++.+..+|..++..|++++..|..++
T Consensus 36 E~Le~~~~~n~~~~~e~~~L~~d~e~L~~q~~~ek~~r~~~e~~l~~~E---d~~~~e~k~L~~~v~~Le~e~r~L~~~~ 112 (158)
T PF09744_consen 36 ELLESLASRNQEHEVELELLREDNEQLETQYEREKELRKQAEEELLELE---DQWRQERKDLQSQVEQLEEENRQLELKL 112 (158)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred cccC
Q 001692 689 LLST 692 (1027)
Q Consensus 689 ~~~~ 692 (1027)
.+.+
T Consensus 113 ~~~~ 116 (158)
T PF09744_consen 113 KNLS 116 (158)
T ss_pred hhhh
No 347
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=72.51 E-value=86 Score=29.43 Aligned_cols=32 Identities=13% Similarity=0.206 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001692 656 AESKIVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1027)
Q Consensus 656 ~~~~~~~l~~~~~~Lee~l~~le~e~~~L~qq 687 (1027)
...+++.++..+..++.++..++.++..++++
T Consensus 72 l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~ 103 (110)
T TIGR02338 72 LKEKKETLELRVKTLQRQEERLREQLKELQEK 103 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555555555555543
No 348
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=72.47 E-value=62 Score=31.61 Aligned_cols=72 Identities=10% Similarity=0.252 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001692 615 TSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1027)
Q Consensus 615 ~~e~~kLe~~l~~l~~~l~elek~~~ele~~~~~~~~~l~~~~~~~~~l~~~~~~Lee~l~~le~e~~~L~q 686 (1027)
...++.....+......+.....++..+....++....-..+.............-+..|++|..||+.++.
T Consensus 25 ~~~~~~a~~~~~~~~~~l~~~~~qL~~l~~~a~~~~~~Q~~Lr~~~~~~~~~l~~re~~i~rL~~ENe~lR~ 96 (135)
T TIGR03495 25 RADLERANRVLKAQQAELASKANQLIVLLALAKRNEEAQAQLRQQLAQARALLAQREQRIERLKRENEDLRR 96 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHH
Confidence 333333333333344444444444444433333333333344444455556666667778888888888887
No 349
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=72.46 E-value=71 Score=33.23 Aligned_cols=29 Identities=38% Similarity=0.574 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001692 610 VVEELTSENEKLKTLVSSLEKKIDETEKK 638 (1027)
Q Consensus 610 ~~~~L~~e~~kLe~~l~~l~~~l~elek~ 638 (1027)
++..|..++..|+.++.+++.+.+.+++.
T Consensus 128 ~i~~L~~e~~~L~~~~~~l~~~~e~~ek~ 156 (189)
T PF10211_consen 128 EIEELEEEKEELEKQVQELKNKCEQLEKR 156 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444443
No 350
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=72.27 E-value=1.4e+02 Score=31.84 Aligned_cols=77 Identities=18% Similarity=0.250 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhc
Q 001692 609 AVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQS 688 (1027)
Q Consensus 609 ~~~~~L~~e~~kLe~~l~~l~~~l~elek~~~ele~~~~~~~~~l~~~~~~~~~l~~~~~~Lee~l~~le~e~~~L~qq~ 688 (1027)
.-...|+..+..++.++..+++.+++....+...+. +...+|..++.+..++-..+-+++..+..|+.|+..++++.
T Consensus 136 ~~n~~Le~~~~~le~~l~~~k~~ie~vN~~RK~~Q~---~~~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~~~~ 212 (221)
T PF05700_consen 136 IHNEQLEAMLKRLEKELAKLKKEIEEVNRERKRRQE---EAGEELRYLEQRWKELVSKNLEIEVACEELEQEIEQLKRKA 212 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555555555544443333222 23345566777777777777777777777777777776654
No 351
>KOG2010 consensus Double stranded RNA binding protein [General function prediction only]
Probab=72.20 E-value=16 Score=40.09 Aligned_cols=72 Identities=21% Similarity=0.285 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 001692 612 EELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQI 683 (1027)
Q Consensus 612 ~~L~~e~~kLe~~l~~l~~~l~elek~~~ele~~~~~~~~~l~~~~~~~~~l~~~~~~Lee~l~~le~e~~~ 683 (1027)
..|..++..|--+++-|+..+++.+.++++-.++.+++.++++.....+.-|+-..++|++.|+.-++-++.
T Consensus 136 aQLDNEKsnl~YqVDtLKD~LeE~eeqLaeS~Re~eek~kE~er~Kh~~s~Lq~~~~elKe~l~QRdeliee 207 (405)
T KOG2010|consen 136 AQLDNEKNNLIYQVDTLKDVLEEQEEQLAESYRENEEKSKELERQKHMCSVLQHKMEELKEGLRQRDELIEE 207 (405)
T ss_pred HhhcccccceeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446667777888889999999999999999999999999999999999999999999999988877665544
No 352
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=72.02 E-value=2.2e+02 Score=33.97 Aligned_cols=29 Identities=21% Similarity=0.430 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 001692 655 EAESKIVQLKTAMHRLEEKVSDMETENQI 683 (1027)
Q Consensus 655 ~~~~~~~~l~~~~~~Lee~l~~le~e~~~ 683 (1027)
....++.+++.++..+++++...+..+..
T Consensus 288 ~~~~~l~~~~~~l~~~~~~l~~a~~~l~~ 316 (457)
T TIGR01000 288 KVKQEITDLNQKLLELESKIKSLKEDSQK 316 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 45556666666666666666666665543
No 353
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=71.92 E-value=34 Score=40.21 Aligned_cols=73 Identities=16% Similarity=0.216 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 001692 612 EELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERL-KQALEAESKIVQLKTAMHRLEEKVSDMETENQIL 684 (1027)
Q Consensus 612 ~~L~~e~~kLe~~l~~l~~~l~elek~~~ele~~~~~~~-~~l~~~~~~~~~l~~~~~~Lee~l~~le~e~~~L 684 (1027)
.+++++...+..+.+.+.+++++++++...+........ .+-.+++.+..+++.+.++++..+..|...++.+
T Consensus 69 k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l~~~l~~~ 142 (472)
T TIGR03752 69 KELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQLQRRLAGV 142 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 333333333333333444444444333333333322211 2223445555566666677777777777766553
No 354
>PRK02119 hypothetical protein; Provisional
Probab=71.72 E-value=25 Score=30.46 Aligned_cols=13 Identities=8% Similarity=0.176 Sum_probs=4.9
Q ss_pred HHHHhHHHHHHHH
Q 001692 672 EKVSDMETENQIL 684 (1027)
Q Consensus 672 e~l~~le~e~~~L 684 (1027)
.+|..|+.++..|
T Consensus 37 ~~id~L~~ql~~L 49 (73)
T PRK02119 37 FVIDKMQVQLRYM 49 (73)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 355
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=71.21 E-value=1.5e+02 Score=31.84 Aligned_cols=28 Identities=18% Similarity=0.560 Sum_probs=17.8
Q ss_pred cchhhHHHHHh----hCCCCccChHHHHHHHh
Q 001692 293 GGVMEAIRISC----AGYPTRKPFDEFVDRFG 320 (1027)
Q Consensus 293 ~gvle~iri~~----~Gyp~r~~~~~F~~ry~ 320 (1027)
+|..+.+++.. -.||+|-.+++|+..-+
T Consensus 107 sgfad~lkvka~eakidfpsrhdwdd~fm~~k 138 (445)
T KOG2891|consen 107 SGFADILKVKAAEAKIDFPSRHDWDDFFMDAK 138 (445)
T ss_pred cccchHHhhhHHhhcCCCCcccchHHHHhhhh
Confidence 34455555433 36888888888886544
No 356
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=71.19 E-value=40 Score=33.71 Aligned_cols=29 Identities=17% Similarity=0.346 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 001692 654 LEAESKIVQLKTAMHRLEEKVSDMETENQ 682 (1027)
Q Consensus 654 ~~~~~~~~~l~~~~~~Lee~l~~le~e~~ 682 (1027)
+++++.+..|.+++...++.|.++++-..
T Consensus 119 eemQe~i~~L~kev~~~~erl~~~k~g~~ 147 (201)
T KOG4603|consen 119 EEMQEEIQELKKEVAGYRERLKNIKAGTN 147 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 45666666666666666666666665543
No 357
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=71.09 E-value=2.4e+02 Score=34.00 Aligned_cols=27 Identities=15% Similarity=0.202 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 001692 657 ESKIVQLKTAMHRLEEKVSDMETENQI 683 (1027)
Q Consensus 657 ~~~~~~l~~~~~~Lee~l~~le~e~~~ 683 (1027)
+.++..|+.+....++....+-+..+.
T Consensus 354 ~~el~~L~Re~~~~~~~Y~~l~~r~ee 380 (498)
T TIGR03007 354 EAELTQLNRDYEVNKSNYEQLLTRRES 380 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444555554444444444444433
No 358
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=70.83 E-value=48 Score=36.04 Aligned_cols=39 Identities=15% Similarity=0.263 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001692 649 RLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1027)
Q Consensus 649 ~~~~l~~~~~~~~~l~~~~~~Lee~l~~le~e~~~L~qq 687 (1027)
...+..++|+++.....++..|+.++++|+.+|-.|-.+
T Consensus 91 FR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEK 129 (248)
T PF08172_consen 91 FRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEK 129 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555666666666666666655543
No 359
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=70.60 E-value=8.5 Score=42.91 Aligned_cols=76 Identities=16% Similarity=0.243 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001692 612 EELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1027)
Q Consensus 612 ~~L~~e~~kLe~~l~~l~~~l~elek~~~ele~~~~~~~~~l~~~~~~~~~l~~~~~~Lee~l~~le~e~~~L~qq 687 (1027)
..+...+..++..++++...+..+...+.+.+.....+...+..+.-.+..|+..+..+.-.|..|+..++.|+.-
T Consensus 80 ~sLsstV~~lq~Sl~~lsssVs~lS~~ls~h~ssIS~Lqs~v~~lsTdvsNLksdVSt~aL~ItdLe~RV~~LEs~ 155 (326)
T PF04582_consen 80 NSLSSTVTSLQSSLSSLSSSVSSLSSTLSDHSSSISDLQSSVSALSTDVSNLKSDVSTQALNITDLESRVKALESG 155 (326)
T ss_dssp --------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHhhhHHhhhhhhhhhhhhHHHHHHhhhhhhhhhhhhhhhhhhhcchHhhHHHHHHHHhcC
Confidence 3344444455555555555555555555555555555555566666777778888888888888888888888864
No 360
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=70.57 E-value=32 Score=31.02 Aligned_cols=56 Identities=23% Similarity=0.357 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHH
Q 001692 527 QAAKNKLEKQVEELTWRLQLEKRMRVDMEEAKT--------------QENAKLQSALQEMQLQFKESKEK 582 (1027)
Q Consensus 527 ~~~k~~LE~kv~el~~rl~~e~~~~~ele~~~~--------------~e~~~L~~~l~~le~~l~~~~~~ 582 (1027)
......||..|.+|+.+|+.|..++..++.+.. ....+|-.++.-++.++..++..
T Consensus 7 ~~~r~~LeqeV~~Lq~~L~~E~~~r~aLe~al~~~~~~~~~~~~~lp~~~keLL~EIA~lE~eV~~LE~~ 76 (88)
T PF14389_consen 7 HERRSALEQEVAELQKQLQEEQDLRRALEKALGRSSGSLPSSPSSLPKKAKELLEEIALLEAEVAKLEQK 76 (88)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCccccCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567999999999999999999999987654 23444555555555554444433
No 361
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=70.19 E-value=1.7e+02 Score=31.81 Aligned_cols=11 Identities=27% Similarity=0.519 Sum_probs=4.3
Q ss_pred HHHHhHHHHHH
Q 001692 672 EKVSDMETENQ 682 (1027)
Q Consensus 672 e~l~~le~e~~ 682 (1027)
..+..+..+++
T Consensus 175 ~~~~~l~~~le 185 (247)
T PF06705_consen 175 SKLSELRSELE 185 (247)
T ss_pred HHHHHHHHHHH
Confidence 33333343333
No 362
>KOG2685 consensus Cystoskeletal protein Tektin [Cytoskeleton]
Probab=70.14 E-value=2.1e+02 Score=33.04 Aligned_cols=32 Identities=9% Similarity=0.158 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 001692 651 KQALEAESKIVQLKTAMHRLEEKVSDMETENQ 682 (1027)
Q Consensus 651 ~~l~~~~~~~~~l~~~~~~Lee~l~~le~e~~ 682 (1027)
.-+..++.++.+.++.+..|...-.+|+.++.
T Consensus 358 ~t~~~L~~kL~eA~~~l~~L~~~~~rLe~di~ 389 (421)
T KOG2685|consen 358 DTVAALKEKLDEAEDSLKLLVNHRARLERDIA 389 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444554443
No 363
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=70.08 E-value=65 Score=31.61 Aligned_cols=34 Identities=21% Similarity=0.312 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhc
Q 001692 655 EAESKIVQLKTAMHRLEEKVSDMETENQILRQQS 688 (1027)
Q Consensus 655 ~~~~~~~~l~~~~~~Lee~l~~le~e~~~L~qq~ 688 (1027)
..+++++.+++.+..+++.+..+..+++.+++..
T Consensus 98 ~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l 131 (140)
T PRK03947 98 ILDKRKEELEKALEKLEEALQKLASRIAQLAQEL 131 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555566666666666666666665555543
No 364
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=69.93 E-value=78 Score=40.54 Aligned_cols=12 Identities=25% Similarity=0.504 Sum_probs=5.9
Q ss_pred eecc-ceeeeccc
Q 001692 350 QIGK-TKVFLRAG 361 (1027)
Q Consensus 350 ~iG~-TkVFlr~~ 361 (1027)
.+|- .+||.+-|
T Consensus 367 ~i~~~~~i~~~ig 379 (782)
T PRK00409 367 EIPVFKEIFADIG 379 (782)
T ss_pred cccccceEEEecC
Confidence 4553 45555444
No 365
>PRK09343 prefoldin subunit beta; Provisional
Probab=69.90 E-value=1.1e+02 Score=29.43 Aligned_cols=13 Identities=31% Similarity=0.447 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHH
Q 001692 567 SALQEMQLQFKES 579 (1027)
Q Consensus 567 ~~l~~le~~l~~~ 579 (1027)
..++.++.++...
T Consensus 14 ~~~q~lq~~l~~~ 26 (121)
T PRK09343 14 AQLQQLQQQLERL 26 (121)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444443
No 366
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=69.87 E-value=2.9e+02 Score=35.19 Aligned_cols=21 Identities=5% Similarity=0.150 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhH
Q 001692 657 ESKIVQLKTAMHRLEEKVSDM 677 (1027)
Q Consensus 657 ~~~~~~l~~~~~~Lee~l~~l 677 (1027)
+..+.+|+.+.+-.++-...+
T Consensus 369 e~~~~~L~R~~~~~~~lY~~l 389 (726)
T PRK09841 369 QQEVLRLSRDVEAGRAVYLQL 389 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444443333
No 367
>PTZ00121 MAEBL; Provisional
Probab=69.66 E-value=4e+02 Score=35.93 Aligned_cols=7 Identities=43% Similarity=1.141 Sum_probs=3.2
Q ss_pred eeEecCC
Q 001692 266 YIRCVKP 272 (1027)
Q Consensus 266 fIrCikp 272 (1027)
|-+|+-|
T Consensus 826 ySyClgp 832 (2084)
T PTZ00121 826 YSYCLGP 832 (2084)
T ss_pred HHhhcCc
Confidence 3444444
No 368
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=69.37 E-value=35 Score=34.41 Aligned_cols=38 Identities=13% Similarity=0.187 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001692 610 VVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISE 647 (1027)
Q Consensus 610 ~~~~L~~e~~kLe~~l~~l~~~l~elek~~~ele~~~~ 647 (1027)
-++.+...+..|+..+......++.+++.+...+...+
T Consensus 21 ~~e~ll~~~~~LE~qL~~~~~~l~lLq~e~~~~e~~le 58 (160)
T PF13094_consen 21 DYEQLLDRKRALERQLAANLHQLELLQEEIEKEEAALE 58 (160)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777777666666665555554444444
No 369
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=69.13 E-value=64 Score=36.42 Aligned_cols=54 Identities=22% Similarity=0.219 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001692 610 VVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQL 663 (1027)
Q Consensus 610 ~~~~L~~e~~kLe~~l~~l~~~l~elek~~~ele~~~~~~~~~l~~~~~~~~~l 663 (1027)
+.++|.++-++|++.......+++++.+....--+.......++++....+..+
T Consensus 5 EW~eL~~efq~Lqethr~Y~qKleel~~lQ~~C~ssI~~QkkrLk~L~~sLk~~ 58 (330)
T PF07851_consen 5 EWEELQKEFQELQETHRSYKQKLEELSKLQDKCSSSISHQKKRLKELKKSLKRC 58 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345555666666666666666666655555555555444444554444444433
No 370
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=69.06 E-value=73 Score=33.60 Aligned_cols=60 Identities=17% Similarity=0.189 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhc
Q 001692 629 EKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQS 688 (1027)
Q Consensus 629 ~~~l~elek~~~ele~~~~~~~~~l~~~~~~~~~l~~~~~~Lee~l~~le~e~~~L~qq~ 688 (1027)
+.+.++++.++.+|..+.+.+..+.+.++.+-..|-.+.++|...+..+++++..++++.
T Consensus 89 KaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l~~~~~~~ 148 (292)
T KOG4005|consen 89 KARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQELAELKQQQ 148 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHHHH
Confidence 344555666666666666666666666666666777777777777777788887776654
No 371
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=68.99 E-value=39 Score=39.91 Aligned_cols=59 Identities=20% Similarity=0.181 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001692 629 EKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1027)
Q Consensus 629 ~~~l~elek~~~ele~~~~~~~~~l~~~~~~~~~l~~~~~~Lee~l~~le~e~~~L~qq 687 (1027)
..++.+++.+++++..+.++...++++++..+.+.+.++..|+..++.-+...++++++
T Consensus 92 s~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~~~ 150 (907)
T KOG2264|consen 92 SLELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEELRET 150 (907)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHhh
Confidence 33444555555555555555555555666666666666667777777777777766664
No 372
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=68.83 E-value=54 Score=33.30 Aligned_cols=64 Identities=14% Similarity=0.141 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 001692 614 LTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQIL 684 (1027)
Q Consensus 614 L~~e~~kLe~~l~~l~~~l~elek~~~ele~~~~~~~~~l~~~~~~~~~l~~~~~~Lee~l~~le~e~~~L 684 (1027)
...-+.+|+.+++....+...+.+.....+..+++.+. .-+++..++..|...+..++.++...
T Consensus 79 ~ks~~qeLe~~L~~~~qk~~tl~e~~en~K~~~e~tEe-------r~~el~kklnslkk~~e~lr~el~k~ 142 (203)
T KOG3433|consen 79 RKSVLQELESQLATGSQKKATLGESIENRKAGREETEE-------RTDELTKKLNSLKKILESLRWELAKI 142 (203)
T ss_pred HHHHHHHHHHHHHHhhhhHhHHHHHHHHHHhhhhhhHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555555555544444443333 33344444444444444444444433
No 373
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=68.75 E-value=1.9e+02 Score=32.01 Aligned_cols=33 Identities=24% Similarity=0.421 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 001692 653 ALEAESKIVQLKTAMHRLEEKVSDMETENQILR 685 (1027)
Q Consensus 653 l~~~~~~~~~l~~~~~~Lee~l~~le~e~~~L~ 685 (1027)
+.+...+++.+......++..+..++..+..|+
T Consensus 216 ~ve~~~~~~e~~ee~~~~~~elre~~k~ik~l~ 248 (294)
T COG1340 216 FVELSKKIDELHEEFRNLQNELRELEKKIKALR 248 (294)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444444444444433
No 374
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=68.75 E-value=2.9e+02 Score=34.00 Aligned_cols=248 Identities=12% Similarity=0.119 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH------HHHHhhhhHHHH
Q 001692 426 CLRIQRDLRMYLAKKAYKDMCFSAVCIQTGMRGMAARNELRFRRQTRASILIQSHCRKYLAR------LHYMKLKKAAIT 499 (1027)
Q Consensus 426 ai~IQ~~~R~~~~rk~y~~~r~a~~~iQs~~Rg~~aR~~~~~~r~~~aa~~IQ~~~R~~~~r------~~~~~~~~a~i~ 499 (1027)
++.|=-+.=++..||++.+.-.....--..+.......++...+.-+-+-..+..+..|... ..+-..-....-
T Consensus 7 vi~l~~~~~~~~~rk~~~k~i~~Le~~k~~l~~~pv~~el~kvk~l~l~Gqt~~~fe~w~~~w~~i~~~~~~~ie~~L~~ 86 (560)
T PF06160_consen 7 VIVLIIYIIGYIYRKRYYKEIDELEERKNELMNLPVADELSKVKKLNLTGQTEEKFEEWRQKWDEIVTKQLPEIEEQLFE 86 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001692 500 TQCAWRGKVARRELRKLKMAARETGALQAAKNKLEKQVEELTWRLQLEKRMRVDMEEAKTQENAKLQSALQEMQLQFKES 579 (1027)
Q Consensus 500 iQ~~~R~~~arkel~~l~~~a~~~~~L~~~k~~LE~kv~el~~rl~~e~~~~~ele~~~~~e~~~L~~~l~~le~~l~~~ 579 (1027)
+.....++...+.-..+......+..+......+...+.++...-+ ..+.++..+....+.++..+.+-
T Consensus 87 ae~~~~~~rf~ka~~~i~~~~~~l~~~e~~i~~i~~~l~~L~~~e~-----------~nr~~i~~l~~~y~~lrk~ll~~ 155 (560)
T PF06160_consen 87 AEEYADKYRFKKAKQAIKEIEEQLDEIEEDIKEILDELDELLESEE-----------KNREEIEELKEKYRELRKELLAH 155 (560)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred HHHHHHHHHHHHHHhhccccccccchh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001692 580 KEKLMKEIEVAKKEAEKVPVVQEVPVI--DHAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAE 657 (1027)
Q Consensus 580 ~~~l~~e~~~~~~~~ee~~~~~e~~~~--~~~~~~~L~~e~~kLe~~l~~l~~~l~elek~~~ele~~~~~~~~~l~~~~ 657 (1027)
.-..-.......+.+..+...=+.-.. ......+......+++..+.+++..+++.=.-..+++...-....+|+.-=
T Consensus 156 ~~~~G~a~~~Le~~L~~ie~~F~~f~~lt~~GD~~~A~eil~~l~~~~~~l~~~~e~IP~l~~~l~~~~P~ql~eL~~gy 235 (560)
T PF06160_consen 156 SFSYGPAIEELEKQLENIEEEFSEFEELTENGDYLEAREILEKLKEETDELEEIMEDIPKLYKELQKEFPDQLEELKEGY 235 (560)
T ss_pred hhhhchhHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHH
Q ss_pred HHHH---------HHHHHHHHHHHHHHhHHHHHHHH
Q 001692 658 SKIV---------QLKTAMHRLEEKVSDMETENQIL 684 (1027)
Q Consensus 658 ~~~~---------~l~~~~~~Lee~l~~le~e~~~L 684 (1027)
.++. +..+++..+++++......+..|
T Consensus 236 ~~m~~~gy~l~~~~i~~~i~~i~~~l~~~~~~L~~l 271 (560)
T PF06160_consen 236 REMEEEGYYLEHLDIEEEIEQIEEQLEEALALLKNL 271 (560)
T ss_pred HHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHcC
No 375
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=68.59 E-value=1.5e+02 Score=34.41 Aligned_cols=75 Identities=16% Similarity=0.211 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001692 613 ELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1027)
Q Consensus 613 ~L~~e~~kLe~~l~~l~~~l~elek~~~ele~~~~~~~~~l~~~~~~~~~l~~~~~~Lee~l~~le~e~~~L~qq 687 (1027)
.+..+..+|.+++.+++++-.++...+.+++..++++..+-...-..-.....++-..++++..++.+..--+.|
T Consensus 187 ~l~~eE~~L~q~lk~le~~~~~l~~~l~e~~~~~~~~~e~~~~~~~ey~~~~~q~~~~~del~Sle~q~~~s~~q 261 (447)
T KOG2751|consen 187 NLKEEEERLLQQLEELEKEEAELDHQLKELEFKAERLNEEEDQYWREYNNFQRQLIEHQDELDSLEAQIEYSQAQ 261 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHH
Confidence 334444444555555555544555555555555544444444444444455555556666677776666544433
No 376
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=68.16 E-value=1.8e+02 Score=31.38 Aligned_cols=13 Identities=8% Similarity=0.146 Sum_probs=5.8
Q ss_pred hHHHHHHHHHHhc
Q 001692 157 HETFAQKLYQTFK 169 (1027)
Q Consensus 157 d~~~~~kl~~~~~ 169 (1027)
+..++++|.....
T Consensus 51 nwdlmerlk~aid 63 (445)
T KOG2891|consen 51 NWDLMERLKGAID 63 (445)
T ss_pred hHHHHHHHHhhcc
Confidence 3344555544443
No 377
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=68.16 E-value=98 Score=28.37 Aligned_cols=15 Identities=20% Similarity=0.335 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHHH
Q 001692 615 TSENEKLKTLVSSLE 629 (1027)
Q Consensus 615 ~~e~~kLe~~l~~l~ 629 (1027)
...+..++.++.+..
T Consensus 18 ~~q~~~l~~~~~~~~ 32 (106)
T PF01920_consen 18 EQQIQQLERQLRELE 32 (106)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 378
>PRK02119 hypothetical protein; Provisional
Probab=68.04 E-value=38 Score=29.39 Aligned_cols=10 Identities=10% Similarity=0.049 Sum_probs=3.6
Q ss_pred HHHHhHHHHH
Q 001692 672 EKVSDMETEN 681 (1027)
Q Consensus 672 e~l~~le~e~ 681 (1027)
.++..|...+
T Consensus 44 ~ql~~L~~rl 53 (73)
T PRK02119 44 VQLRYMANKL 53 (73)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 379
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=67.97 E-value=94 Score=28.08 Aligned_cols=37 Identities=16% Similarity=0.302 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001692 608 HAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSK 644 (1027)
Q Consensus 608 ~~~~~~L~~e~~kLe~~l~~l~~~l~elek~~~ele~ 644 (1027)
+.+++.|......|.++++..+.+...++....++..
T Consensus 38 e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~ 74 (89)
T PF13747_consen 38 EEEIQRLDADRSRLAQELDQAEARANRLEEANREVSR 74 (89)
T ss_pred HHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555554444444444333
No 380
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=67.94 E-value=42 Score=39.71 Aligned_cols=53 Identities=25% Similarity=0.260 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001692 608 HAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKI 660 (1027)
Q Consensus 608 ~~~~~~L~~e~~kLe~~l~~l~~~l~elek~~~ele~~~~~~~~~l~~~~~~~ 660 (1027)
-.++.+|+-|+.-|+.+++..+.....++.++.+++.++.++..++.+++.+.
T Consensus 328 IakVDeL~~E~~vLrgElea~kqak~Klee~i~elEEElk~~k~ea~~ar~~~ 380 (832)
T KOG2077|consen 328 IAKVDELTCEKDVLRGELEAVKQAKLKLEEKIRELEEELKKAKAEAEDARQKA 380 (832)
T ss_pred HHHHHhhccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 56777777788888877777777777777777777777777777766665443
No 381
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=67.93 E-value=37 Score=29.06 Aligned_cols=28 Identities=7% Similarity=0.192 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHhc
Q 001692 661 VQLKTAMHRLEEKVSDMETENQILRQQS 688 (1027)
Q Consensus 661 ~~l~~~~~~Lee~l~~le~e~~~L~qq~ 688 (1027)
.+.+..+..++.+++-|-+.+..++.++
T Consensus 32 aEq~~~i~k~q~qlr~L~~kl~~~~~~~ 59 (72)
T COG2900 32 AEQQLVIDKLQAQLRLLTEKLKDLQPSA 59 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 3344444444444455544454444433
No 382
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=67.81 E-value=28 Score=29.81 Aligned_cols=15 Identities=20% Similarity=0.507 Sum_probs=4.5
Q ss_pred HHHHHHHHHHHHHHh
Q 001692 662 QLKTAMHRLEEKVSD 676 (1027)
Q Consensus 662 ~l~~~~~~Lee~l~~ 676 (1027)
.|+..+..|.+++..
T Consensus 36 ~L~~~l~~L~~rl~~ 50 (69)
T PF04102_consen 36 RLQRQLRLLRERLRE 50 (69)
T ss_dssp HHHHHHHHHHHT---
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 383
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=67.49 E-value=74 Score=40.64 Aligned_cols=11 Identities=9% Similarity=0.262 Sum_probs=5.2
Q ss_pred eccchhhhhcc
Q 001692 196 QTELFLDKNKD 206 (1027)
Q Consensus 196 ~~~~fl~kN~d 206 (1027)
....+++-|..
T Consensus 220 ep~~~~~ln~~ 230 (771)
T TIGR01069 220 EPQAIVKLNNK 230 (771)
T ss_pred EcHHHHHHHHH
Confidence 33345555544
No 384
>PRK02793 phi X174 lysis protein; Provisional
Probab=67.21 E-value=36 Score=29.45 Aligned_cols=7 Identities=0% Similarity=0.126 Sum_probs=2.5
Q ss_pred hHHHHHH
Q 001692 676 DMETENQ 682 (1027)
Q Consensus 676 ~le~e~~ 682 (1027)
.|+.++.
T Consensus 40 ~L~~~l~ 46 (72)
T PRK02793 40 KLRDHLR 46 (72)
T ss_pred HHHHHHH
Confidence 3333333
No 385
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=67.20 E-value=46 Score=36.18 Aligned_cols=31 Identities=16% Similarity=0.382 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHhc
Q 001692 658 SKIVQLKTAMHRLEEKVSDMETENQILRQQS 688 (1027)
Q Consensus 658 ~~~~~l~~~~~~Lee~l~~le~e~~~L~qq~ 688 (1027)
.++.+|++++..+..++..|+.|++.|+...
T Consensus 93 ~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN 123 (248)
T PF08172_consen 93 QRNAELEEELRKQQQTISSLRREVESLRADN 123 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444433
No 386
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=66.98 E-value=3.9 Score=37.67 Aligned_cols=66 Identities=21% Similarity=0.292 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 001692 613 ELTSENEKLKTLV-SSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDME 678 (1027)
Q Consensus 613 ~L~~e~~kLe~~l-~~l~~~l~elek~~~ele~~~~~~~~~l~~~~~~~~~l~~~~~~Lee~l~~le 678 (1027)
.+..|+..|-..| ++..+.+...++....++.....+..++++.+..+..++.++..|+..+..+.
T Consensus 19 ~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~k~~~le~~l~e~~~~l~~lq~qL~~LK~v~~~~~ 85 (100)
T PF06428_consen 19 QIESELEELTASLFEEANKMVADARRERAALEEKNEQLEKQLKEKEALLESLQAQLKELKTVMESME 85 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTHHCHCCCHCTSSSSHHHHCTTT--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 3334444444433 44444555555555555555555555555555555555544444444444433
No 387
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=66.79 E-value=54 Score=39.93 Aligned_cols=80 Identities=19% Similarity=0.188 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHH
Q 001692 608 HAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKIS------------------EERLKQALEAESKIVQLKTAMHR 669 (1027)
Q Consensus 608 ~~~~~~L~~e~~kLe~~l~~l~~~l~elek~~~ele~~~------------------~~~~~~l~~~~~~~~~l~~~~~~ 669 (1027)
.+.+.+|++++..++.++..++.+++.++.+++-++.-. .++.+-+.-..+++.++.....+
T Consensus 70 ~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (525)
T TIGR02231 70 PERLAELRKQIRELEAELRDLEDRGDALKALAKFLEDIREGLTEPIKDSAKRNEPDLKEWFQAFDFNGSEIERLLTEDRE 149 (525)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666666666666655555443333221 11222222333444445555555
Q ss_pred HHHHHHhHHHHHHHHHHh
Q 001692 670 LEEKVSDMETENQILRQQ 687 (1027)
Q Consensus 670 Lee~l~~le~e~~~L~qq 687 (1027)
++.+++.+++++..|+++
T Consensus 150 ~~~~~~~~~~~l~~l~~~ 167 (525)
T TIGR02231 150 AERRIRELEKQLSELQNE 167 (525)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 555555555555555444
No 388
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=66.64 E-value=2.2e+02 Score=31.79 Aligned_cols=18 Identities=33% Similarity=0.499 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 001692 531 NKLEKQVEELTWRLQLEK 548 (1027)
Q Consensus 531 ~~LE~kv~el~~rl~~e~ 548 (1027)
+.||++.+.|+++++.+.
T Consensus 142 ~~LEKEReqL~QQiEFe~ 159 (561)
T KOG1103|consen 142 AHLEKEREQLQQQIEFEI 159 (561)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 457777777777776443
No 389
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=66.27 E-value=1.5e+02 Score=37.25 Aligned_cols=16 Identities=31% Similarity=0.401 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 001692 530 KNKLEKQVEELTWRLQ 545 (1027)
Q Consensus 530 k~~LE~kv~el~~rl~ 545 (1027)
...++..+..+...+.
T Consensus 177 ~~~~~~~~~~~~~~l~ 192 (670)
T KOG0239|consen 177 SLKLESDLGDLVTELE 192 (670)
T ss_pred HHHHhhhHHHHHHHHH
Confidence 3445555555554444
No 390
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=65.56 E-value=4.6e+02 Score=35.14 Aligned_cols=32 Identities=19% Similarity=0.322 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001692 612 EELTSENEKLKTLVSSLEKKIDETEKKFEETS 643 (1027)
Q Consensus 612 ~~L~~e~~kLe~~l~~l~~~l~elek~~~ele 643 (1027)
..+...+..-++.+.+.+.+..+++..+..++
T Consensus 300 ~~l~~~~~n~~~~~~~~~~~~~~~e~~~~~l~ 331 (1294)
T KOG0962|consen 300 EELGELLSNFEERLEEMGEKLRELEREISDLN 331 (1294)
T ss_pred HHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHH
Confidence 33444444444444444444444444444433
No 391
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=65.50 E-value=12 Score=43.32 Aligned_cols=30 Identities=23% Similarity=0.452 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 001692 656 AESKIVQLKTAMHRLEEKVSDMETENQILR 685 (1027)
Q Consensus 656 ~~~~~~~l~~~~~~Lee~l~~le~e~~~L~ 685 (1027)
++..+.+++..+..++..+..++..+..|+
T Consensus 156 lEd~~~~i~~~~~~~~k~i~~l~~kl~DlE 185 (370)
T PF02994_consen 156 LEDRIEEIEQAIKELEKRIKKLEDKLDDLE 185 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333334444444444444433
No 392
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=65.46 E-value=27 Score=39.99 Aligned_cols=75 Identities=20% Similarity=0.260 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001692 612 EELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1027)
Q Consensus 612 ~~L~~e~~kLe~~l~~l~~~l~elek~~~ele~~~~~~~~~l~~~~~~~~~l~~~~~~Lee~l~~le~e~~~L~q 686 (1027)
...+..+...+..+.+++.++..++.+..+..+++..++.+++..+.++...+.-+..|..+-.+=.+.+..+..
T Consensus 231 ~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~E~~RW~~~~~~l~~ 305 (344)
T PF12777_consen 231 EEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGLSGEKERWSEQIEELEE 305 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCHCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhcchhhhHHHHHHHHHH
Confidence 334444444555555555555555555555555555555555555555555444444444444443434444433
No 393
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=65.34 E-value=1.8e+02 Score=30.46 Aligned_cols=9 Identities=22% Similarity=0.309 Sum_probs=3.3
Q ss_pred HHHhHHHHH
Q 001692 673 KVSDMETEN 681 (1027)
Q Consensus 673 ~l~~le~e~ 681 (1027)
.+..++.++
T Consensus 121 ~l~~~~~e~ 129 (201)
T PF12072_consen 121 ELEEREEEL 129 (201)
T ss_pred HHHHHHHHH
Confidence 333333333
No 394
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=65.10 E-value=1.6e+02 Score=37.78 Aligned_cols=11 Identities=9% Similarity=0.341 Sum_probs=4.8
Q ss_pred eccchhhhhcc
Q 001692 196 QTELFLDKNKD 206 (1027)
Q Consensus 196 ~~~~fl~kN~d 206 (1027)
.....++-|..
T Consensus 225 ep~~~~~ln~~ 235 (782)
T PRK00409 225 EPQSVVELNNE 235 (782)
T ss_pred EcHHHHHHHHH
Confidence 33335544443
No 395
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=65.07 E-value=31 Score=30.41 Aligned_cols=42 Identities=26% Similarity=0.435 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001692 646 SEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1027)
Q Consensus 646 ~~~~~~~l~~~~~~~~~l~~~~~~Lee~l~~le~e~~~L~qq 687 (1027)
++++..++..++..+..|-..+...+++..+|+.||+.|++-
T Consensus 18 k~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~Y 59 (80)
T PF10224_consen 18 KEELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQY 59 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555666666666666666677777777777777763
No 396
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=65.05 E-value=39 Score=39.89 Aligned_cols=80 Identities=20% Similarity=0.238 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001692 608 HAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1027)
Q Consensus 608 ~~~~~~L~~e~~kLe~~l~~l~~~l~elek~~~ele~~~~~~~~~l~~~~~~~~~l~~~~~~Lee~l~~le~e~~~L~qq 687 (1027)
-+++-.+.++..++..++++++.+..+..+++..+.+..+ +.+.+..+...+.+++..+++++..+++++..+-..
T Consensus 27 vd~i~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~~~~~~~----~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 102 (425)
T PRK05431 27 VDELLELDEERRELQTELEELQAERNALSKEIGQAKRKGE----DAEALIAEVKELKEEIKALEAELDELEAELEELLLR 102 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566777788888888888888888877777766443321 223444555667777777777777777777766555
Q ss_pred cccc
Q 001692 688 SLLS 691 (1027)
Q Consensus 688 ~~~~ 691 (1027)
..+.
T Consensus 103 iPN~ 106 (425)
T PRK05431 103 IPNL 106 (425)
T ss_pred CCCC
Confidence 4443
No 397
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=64.99 E-value=61 Score=28.28 Aligned_cols=26 Identities=27% Similarity=0.408 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001692 608 HAVVEELTSENEKLKTLVSSLEKKID 633 (1027)
Q Consensus 608 ~~~~~~L~~e~~kLe~~l~~l~~~l~ 633 (1027)
+..++.|.+++-.|+-.+--+++.+.
T Consensus 6 e~~i~~L~KENF~LKLrI~fLee~l~ 31 (75)
T PF07989_consen 6 EEQIDKLKKENFNLKLRIYFLEERLQ 31 (75)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 44556666666666666665555555
No 398
>PLN02678 seryl-tRNA synthetase
Probab=64.93 E-value=41 Score=39.87 Aligned_cols=80 Identities=18% Similarity=0.110 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001692 608 HAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1027)
Q Consensus 608 ~~~~~~L~~e~~kLe~~l~~l~~~l~elek~~~ele~~~~~~~~~l~~~~~~~~~l~~~~~~Lee~l~~le~e~~~L~qq 687 (1027)
-+++-.+..+..++..++++++.+....-+++..+.+..+ +..++.+++..+.+++..+++++..+++++..+-..
T Consensus 32 id~il~ld~~~r~l~~~~e~lr~erN~~sk~I~~~k~~~~----~~~~l~~~~~~Lk~ei~~le~~~~~~~~~l~~~~~~ 107 (448)
T PLN02678 32 VDEVIALDKEWRQRQFELDSLRKEFNKLNKEVAKLKIAKE----DATELIAETKELKKEITEKEAEVQEAKAALDAKLKT 107 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556667777777788888887777777777765433221 223444456667777777788888888877776655
Q ss_pred cccc
Q 001692 688 SLLS 691 (1027)
Q Consensus 688 ~~~~ 691 (1027)
..+.
T Consensus 108 iPNi 111 (448)
T PLN02678 108 IGNL 111 (448)
T ss_pred CCCC
Confidence 5444
No 399
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=64.68 E-value=86 Score=34.08 Aligned_cols=27 Identities=19% Similarity=0.300 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001692 611 VEELTSENEKLKTLVSSLEKKIDETEK 637 (1027)
Q Consensus 611 ~~~L~~e~~kLe~~l~~l~~~l~elek 637 (1027)
+.+|...+++-+..+.+=+.+|++++.
T Consensus 70 iRHLkakLkes~~~l~dRetEI~eLks 96 (305)
T PF15290_consen 70 IRHLKAKLKESENRLHDRETEIDELKS 96 (305)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 333333333333333333333333333
No 400
>PRK00846 hypothetical protein; Provisional
Probab=64.56 E-value=50 Score=28.94 Aligned_cols=7 Identities=0% Similarity=-0.334 Sum_probs=2.5
Q ss_pred HhHHHHH
Q 001692 675 SDMETEN 681 (1027)
Q Consensus 675 ~~le~e~ 681 (1027)
..|+.++
T Consensus 44 ~~L~~ql 50 (77)
T PRK00846 44 ARNAELI 50 (77)
T ss_pred HHHHHHH
Confidence 3333333
No 401
>PRK12704 phosphodiesterase; Provisional
Probab=64.53 E-value=3.3e+02 Score=33.14 Aligned_cols=6 Identities=33% Similarity=0.429 Sum_probs=2.9
Q ss_pred HHHHHH
Q 001692 822 TSTLLF 827 (1027)
Q Consensus 822 ~~~Ll~ 827 (1027)
...|||
T Consensus 363 ~AgLLH 368 (520)
T PRK12704 363 RAGLLH 368 (520)
T ss_pred HHHHHH
Confidence 344555
No 402
>PRK00736 hypothetical protein; Provisional
Probab=63.36 E-value=47 Score=28.34 Aligned_cols=11 Identities=36% Similarity=0.604 Sum_probs=3.9
Q ss_pred HHHHHHHHHHH
Q 001692 626 SSLEKKIDETE 636 (1027)
Q Consensus 626 ~~l~~~l~ele 636 (1027)
.+|+.++.-.+
T Consensus 8 ~~LE~klafqe 18 (68)
T PRK00736 8 TELEIRVAEQE 18 (68)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 403
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=63.33 E-value=1.8e+02 Score=29.77 Aligned_cols=37 Identities=22% Similarity=0.417 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001692 553 DMEEAKTQENAKLQSALQEMQLQFKESKEKLMKEIEV 589 (1027)
Q Consensus 553 ele~~~~~e~~~L~~~l~~le~~l~~~~~~l~~e~~~ 589 (1027)
++......+...++.+.+.++.+++.++.++..+..+
T Consensus 66 el~~~~k~~~~~lr~~~e~L~~eie~l~~~L~~ei~~ 102 (177)
T PF07798_consen 66 ELQNSRKSEFAELRSENEKLQREIEKLRQELREEINK 102 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444455555666666666666655555444433
No 404
>PRK11519 tyrosine kinase; Provisional
Probab=63.05 E-value=4.1e+02 Score=33.77 Aligned_cols=14 Identities=36% Similarity=0.422 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHH
Q 001692 532 KLEKQVEELTWRLQ 545 (1027)
Q Consensus 532 ~LE~kv~el~~rl~ 545 (1027)
-|++++.+++.+|+
T Consensus 271 fL~~ql~~l~~~L~ 284 (719)
T PRK11519 271 FLAQQLPEVRSRLD 284 (719)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444433
No 405
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=63.05 E-value=1.6e+02 Score=29.19 Aligned_cols=24 Identities=17% Similarity=0.480 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHH
Q 001692 659 KIVQLKTAMHRLEEKVSDMETENQ 682 (1027)
Q Consensus 659 ~~~~l~~~~~~Lee~l~~le~e~~ 682 (1027)
+++.+.+....+++.+.+|-....
T Consensus 102 ~~~~l~~~~~~l~~~l~~l~~~~~ 125 (145)
T COG1730 102 RIEELEKAIEKLQQALAELAQRIE 125 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333
No 406
>PRK02793 phi X174 lysis protein; Provisional
Probab=62.65 E-value=50 Score=28.55 Aligned_cols=12 Identities=0% Similarity=0.102 Sum_probs=4.5
Q ss_pred HHHHHhHHHHHH
Q 001692 671 EEKVSDMETENQ 682 (1027)
Q Consensus 671 ee~l~~le~e~~ 682 (1027)
+.+++.|...+.
T Consensus 42 ~~~l~~L~~rl~ 53 (72)
T PRK02793 42 RDHLRLLTEKLK 53 (72)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 407
>KOG0942 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=62.64 E-value=7.7 Score=48.21 Aligned_cols=29 Identities=14% Similarity=0.182 Sum_probs=20.9
Q ss_pred hccchhhhhHHHHHHHHHHHHHHHHHHHH
Q 001692 419 SMRREASCLRIQRDLRMYLAKKAYKDMCF 447 (1027)
Q Consensus 419 ~~r~~~Aai~IQ~~~R~~~~rk~y~~~r~ 447 (1027)
..+++.+|+++|++||||+.|+....+-+
T Consensus 25 ~rk~e~~av~vQs~~Rg~~~r~~~~~~~R 53 (1001)
T KOG0942|consen 25 ERKQEKNAVKVQSFWRGFRVRHNQKLLFR 53 (1001)
T ss_pred HHHHhccchHHHHHHHHHHHHHHHHHHHH
Confidence 34456788888888888888887665543
No 408
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=62.32 E-value=2.6e+02 Score=31.26 Aligned_cols=29 Identities=14% Similarity=0.312 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001692 513 LRKLKMAARETGALQAAKNKLEKQVEELT 541 (1027)
Q Consensus 513 l~~l~~~a~~~~~L~~~k~~LE~kv~el~ 541 (1027)
+.+..++.++...+-....++-.++.+|.
T Consensus 40 yQ~~EQAr~~A~~fA~~ld~~~~kl~~Ms 68 (301)
T PF06120_consen 40 YQNAEQARQEAIEFADSLDELKEKLKEMS 68 (301)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHhcC
Confidence 35555555555555555555555555553
No 409
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=62.32 E-value=3.4e+02 Score=32.48 Aligned_cols=82 Identities=17% Similarity=0.227 Sum_probs=37.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhHHHHH
Q 001692 607 DHAVVEELTSENEKLKTLVSSLEKKIDETEKKFE-ETSKISEERLKQALEAESKIVQL----KTAMHRLEEKVSDMETEN 681 (1027)
Q Consensus 607 ~~~~~~~L~~e~~kLe~~l~~l~~~l~elek~~~-ele~~~~~~~~~l~~~~~~~~~l----~~~~~~Lee~l~~le~e~ 681 (1027)
.++.+..+...+.+|...+..+.-++.--++.+. .+.....+..+......+++..+ +..+.++++++..+-.++
T Consensus 349 le~sv~~l~~~lkDLd~~~~aLs~rld~qEqtL~~rL~e~~~e~~~~~r~~lekl~~~q~e~~~~l~~v~eKVd~LpqqI 428 (531)
T PF15450_consen 349 LEDSVAELMRQLKDLDDHILALSWRLDLQEQTLNLRLSEAKNEWESDERKSLEKLDQWQNEMEKHLKEVQEKVDSLPQQI 428 (531)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 4555566666666666666666555543333221 11111222333333333333332 233344555555555555
Q ss_pred HHHHHhc
Q 001692 682 QILRQQS 688 (1027)
Q Consensus 682 ~~L~qq~ 688 (1027)
+.+..+.
T Consensus 429 ~~vs~Kc 435 (531)
T PF15450_consen 429 EEVSDKC 435 (531)
T ss_pred HHHHHHH
Confidence 5554444
No 410
>PRK00295 hypothetical protein; Provisional
Probab=62.12 E-value=56 Score=27.91 Aligned_cols=17 Identities=18% Similarity=0.304 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 001692 625 VSSLEKKIDETEKKFEE 641 (1027)
Q Consensus 625 l~~l~~~l~elek~~~e 641 (1027)
+.+|+.++.-.+..+.+
T Consensus 7 i~~LE~kla~qE~tie~ 23 (68)
T PRK00295 7 VTELESRQAFQDDTIQA 23 (68)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 411
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=62.04 E-value=87 Score=31.86 Aligned_cols=12 Identities=25% Similarity=0.371 Sum_probs=5.6
Q ss_pred hhhHHHHHHHhh
Q 001692 750 HENVDALINCVA 761 (1027)
Q Consensus 750 ~e~~~~Ll~~i~ 761 (1027)
-++...|++.+.
T Consensus 168 tDnI~il~dy~~ 179 (203)
T KOG3433|consen 168 TDNIFILIDYLY 179 (203)
T ss_pred hhhHHHHHHHHH
Confidence 344445554443
No 412
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=61.59 E-value=1.3e+02 Score=27.51 Aligned_cols=38 Identities=11% Similarity=0.080 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001692 608 HAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKI 645 (1027)
Q Consensus 608 ~~~~~~L~~e~~kLe~~l~~l~~~l~elek~~~ele~~ 645 (1027)
++++..+..++.+..+.+-+.....+.+......+...
T Consensus 30 E~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~ 67 (96)
T PF08647_consen 30 EQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQ 67 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 44555556666666665555555555555444444433
No 413
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=61.47 E-value=62 Score=27.32 Aligned_cols=17 Identities=29% Similarity=0.581 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 001692 659 KIVQLKTAMHRLEEKVS 675 (1027)
Q Consensus 659 ~~~~l~~~~~~Lee~l~ 675 (1027)
++..++.++..+++.+.
T Consensus 47 kl~~~~~~~~~l~~~l~ 63 (66)
T PF10458_consen 47 KLEELEEELEKLEEALE 63 (66)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444444433
No 414
>PF12004 DUF3498: Domain of unknown function (DUF3498); InterPro: IPR021887 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 433 to 538 amino acids in length. This domain is found associated with PF00616 from PFAM, PF00168 from PFAM. This domain has two conserved sequence motifs: DLQ and PLSFQNP. ; PDB: 3BXJ_B.
Probab=60.92 E-value=2.8 Score=49.62 Aligned_cols=27 Identities=22% Similarity=0.261 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001692 519 AARETGALQAAKNKLEKQVEELTWRLQ 545 (1027)
Q Consensus 519 ~a~~~~~L~~~k~~LE~kv~el~~rl~ 545 (1027)
-++++..|++.......+++|.+.||.
T Consensus 374 YEqEI~~LkErL~~S~rkLeEyErrLl 400 (495)
T PF12004_consen 374 YEQEIQSLKERLRMSHRKLEEYERRLL 400 (495)
T ss_dssp ---------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555565555555555555555554
No 415
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=60.88 E-value=96 Score=25.89 Aligned_cols=34 Identities=26% Similarity=0.406 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 001692 648 ERLKQALEAESKIVQLKTAMHRLEEKVSDMETEN 681 (1027)
Q Consensus 648 ~~~~~l~~~~~~~~~l~~~~~~Lee~l~~le~e~ 681 (1027)
.++..+..++.....|..++..|+.++..|..++
T Consensus 30 ~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~ 63 (64)
T PF00170_consen 30 ELEEKVEELESENEELKKELEQLKKEIQSLKSEN 63 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3333444444444455555555555555555554
No 416
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=60.66 E-value=81 Score=37.44 Aligned_cols=34 Identities=18% Similarity=0.346 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001692 609 AVVEELTSENEKLKTLVSSLEKKIDETEKKFEET 642 (1027)
Q Consensus 609 ~~~~~L~~e~~kLe~~l~~l~~~l~elek~~~el 642 (1027)
.++......+.||+..+.++++.+..++.+..+.
T Consensus 343 gElea~kqak~Klee~i~elEEElk~~k~ea~~a 376 (832)
T KOG2077|consen 343 GELEAVKQAKLKLEEKIRELEEELKKAKAEAEDA 376 (832)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555555555555555544444333
No 417
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=60.49 E-value=1.3e+02 Score=27.06 Aligned_cols=19 Identities=32% Similarity=0.254 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 001692 657 ESKIVQLKTAMHRLEEKVS 675 (1027)
Q Consensus 657 ~~~~~~l~~~~~~Lee~l~ 675 (1027)
.++++.+-+.+.++-+.++
T Consensus 67 ~~~v~~~~~~v~~~g~~v~ 85 (90)
T PF06103_consen 67 LEKVDPVFEAVADLGESVS 85 (90)
T ss_pred HHhHHHHHHHHHHHHHHHH
Confidence 3333334344444444333
No 418
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=60.42 E-value=43 Score=29.86 Aligned_cols=27 Identities=30% Similarity=0.560 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHhc
Q 001692 662 QLKTAMHRLEEKVSDMETENQILRQQS 688 (1027)
Q Consensus 662 ~l~~~~~~Lee~l~~le~e~~~L~qq~ 688 (1027)
.+++++..+.+.+...+++++.|++..
T Consensus 40 ~lE~E~~~l~~~l~~~E~eL~~LrkEN 66 (85)
T PF15188_consen 40 SLEKELNELKEKLENNEKELKLLRKEN 66 (85)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHhh
Confidence 455667777777777777777777643
No 419
>PF15233 SYCE1: Synaptonemal complex central element protein 1
Probab=60.24 E-value=72 Score=30.59 Aligned_cols=65 Identities=17% Similarity=0.168 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001692 622 KTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1027)
Q Consensus 622 e~~l~~l~~~l~elek~~~ele~~~~~~~~~l~~~~~~~~~l~~~~~~Lee~l~~le~e~~~L~q 686 (1027)
+-.++++-.++.++.+.......+..+...--+.++..++.|..++..|++-+++.++-+..|+.
T Consensus 5 eP~iE~LInrInelQQaKKk~~EELgEa~~l~eaL~~ELDsL~~EkvhLeeilnkKqe~l~iLql 69 (134)
T PF15233_consen 5 EPQIEDLINRINELQQAKKKSSEELGEAQALWEALQRELDSLNGEKVHLEEILNKKQETLRILQL 69 (134)
T ss_pred cchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 33455555555555554444444444444444556666677777777777777777777666665
No 420
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=60.21 E-value=30 Score=40.71 Aligned_cols=48 Identities=13% Similarity=0.239 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001692 617 ENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLK 664 (1027)
Q Consensus 617 e~~kLe~~l~~l~~~l~elek~~~ele~~~~~~~~~l~~~~~~~~~l~ 664 (1027)
...+|..++++...+++++++.+...+.+...++..++++|.+.+++.
T Consensus 101 krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~ 148 (907)
T KOG2264|consen 101 KRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEELR 148 (907)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHH
Confidence 333444444445555555555555544555555555555555554443
No 421
>PRK00846 hypothetical protein; Provisional
Probab=60.13 E-value=87 Score=27.47 Aligned_cols=23 Identities=13% Similarity=0.089 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHH
Q 001692 663 LKTAMHRLEEKVSDMETENQILR 685 (1027)
Q Consensus 663 l~~~~~~Lee~l~~le~e~~~L~ 685 (1027)
.+..+..|+.+++.|.+.++..+
T Consensus 39 qq~~I~~L~~ql~~L~~rL~~~~ 61 (77)
T PRK00846 39 ARLTGARNAELIRHLLEDLGKVR 61 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 33344444444444444444443
No 422
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=60.10 E-value=58 Score=36.34 Aligned_cols=19 Identities=32% Similarity=0.593 Sum_probs=10.1
Q ss_pred HHHHHHHHhccCCCeeeEe
Q 001692 251 QLQQLLETLSSSEPHYIRC 269 (1027)
Q Consensus 251 ~l~~L~~~l~~t~~hfIrC 269 (1027)
-+..||..+....|-|-+-
T Consensus 127 Liq~l~a~f~~~pP~ys~~ 145 (365)
T KOG2391|consen 127 LIQELIAAFSEDPPVYSRS 145 (365)
T ss_pred HHHHHHHHhcCCCccccCC
Confidence 3445555555555555543
No 423
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=59.72 E-value=3.4e+02 Score=31.65 Aligned_cols=28 Identities=32% Similarity=0.374 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001692 517 KMAARETGALQAAKNKLEKQVEELTWRL 544 (1027)
Q Consensus 517 ~~~a~~~~~L~~~k~~LE~kv~el~~rl 544 (1027)
.....++..|...+..+|..+..+..-+
T Consensus 67 ~~~~~Ei~~L~~~K~~le~aL~~~~~pl 94 (384)
T PF03148_consen 67 EELDEEIDLLEEEKRRLEKALEALRKPL 94 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcH
Confidence 3344556666666666666665554433
No 424
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=59.58 E-value=36 Score=35.23 Aligned_cols=20 Identities=20% Similarity=0.310 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001692 522 ETGALQAAKNKLEKQVEELT 541 (1027)
Q Consensus 522 ~~~~L~~~k~~LE~kv~el~ 541 (1027)
+..+|+.+..+||.++...+
T Consensus 97 EevrLkrELa~Le~~l~~~~ 116 (195)
T PF12761_consen 97 EEVRLKRELAELEEKLSKVE 116 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555444443
No 425
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=59.22 E-value=5.7e+02 Score=34.14 Aligned_cols=23 Identities=13% Similarity=0.079 Sum_probs=14.5
Q ss_pred EecCCHHHHHHHHHHHHHHHHhh
Q 001692 24 TKWLDPEAAAVSRDALAKIVYSR 46 (1027)
Q Consensus 24 ~~~l~~~~a~~~rdalak~lY~~ 46 (1027)
...-|-.+=...-|++.-+||..
T Consensus 35 I~G~tGaGKStildai~~aLyg~ 57 (1047)
T PRK10246 35 ITGPTGAGKTTLLDAICLALYHE 57 (1047)
T ss_pred EECCCCCCHHHHHHHHHHHhcCC
Confidence 34445555566678888888864
No 426
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=58.81 E-value=1.6e+02 Score=28.13 Aligned_cols=31 Identities=13% Similarity=0.379 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001692 656 AESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1027)
Q Consensus 656 ~~~~~~~l~~~~~~Lee~l~~le~e~~~L~q 686 (1027)
.+++++.+++.+..+++.+..++.++..++.
T Consensus 92 l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~ 122 (129)
T cd00890 92 LKKRLETLEKQIEKLEKQLEKLQDQITELQE 122 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555555555444
No 427
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=58.64 E-value=1.6e+02 Score=28.13 Aligned_cols=28 Identities=25% Similarity=0.534 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 001692 657 ESKIVQLKTAMHRLEEKVSDMETENQIL 684 (1027)
Q Consensus 657 ~~~~~~l~~~~~~Lee~l~~le~e~~~L 684 (1027)
+.++..+++.+..+++.+..+.++...+
T Consensus 92 ~~~~~~l~~~~~~l~~~l~~l~~~~~~i 119 (126)
T TIGR00293 92 KKRIEELEKAIEKLQEALAELASRAQQL 119 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444333
No 428
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=58.60 E-value=3.5e+02 Score=31.52 Aligned_cols=18 Identities=33% Similarity=0.420 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 001692 615 TSENEKLKTLVSSLEKKI 632 (1027)
Q Consensus 615 ~~e~~kLe~~l~~l~~~l 632 (1027)
..|+..|++++.++++++
T Consensus 275 q~Ei~~LKqeLa~~EEK~ 292 (395)
T PF10267_consen 275 QNEIYNLKQELASMEEKM 292 (395)
T ss_pred HHHHHHHHHHHHhHHHHH
Confidence 345555555555554443
No 429
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=58.52 E-value=4.3e+02 Score=32.50 Aligned_cols=68 Identities=7% Similarity=0.136 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 001692 609 AVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETE 680 (1027)
Q Consensus 609 ~~~~~L~~e~~kLe~~l~~l~~~l~elek~~~ele~~~~~~~~~l~~~~~~~~~l~~~~~~Lee~l~~le~e 680 (1027)
+++..+...+.+....++++....+++++++..++. ....++.++.++..++++...+-.+++..+.+
T Consensus 308 ~RL~~l~~LkrKyg~s~e~l~~~~~~l~~eL~~l~~----~~~~le~L~~el~~l~~~l~~~a~~Ls~~R~~ 375 (563)
T TIGR00634 308 ERLAQIKRLKRKYGASVEEVLEYAEKIKEELDQLDD----SDESLEALEEEVDKLEEELDKAAVALSLIRRK 375 (563)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhC----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444555555555555555544332 12234444445555555555555555554443
No 430
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=58.19 E-value=62 Score=38.61 Aligned_cols=71 Identities=20% Similarity=0.346 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 001692 614 LTSENEKLKTLVSSLEKKIDETEKKFEETSKIS------EERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQIL 684 (1027)
Q Consensus 614 L~~e~~kLe~~l~~l~~~l~elek~~~ele~~~------~~~~~~l~~~~~~~~~l~~~~~~Lee~l~~le~e~~~L 684 (1027)
+.++...|+.++.++..+++++++.+..+++.. .+....++.+......+.+.+.+|++++..++++++..
T Consensus 332 l~~~~~~l~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~ 408 (451)
T PF03961_consen 332 LKEKLEELEEELEELKEELEKLKKNLKKLKKLKKQGKLPPEKKEQLKKLKEKKKELKEELKELKEELKELKEELERS 408 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334444444455555555555555444444321 12333344445555556666666666666666666555
No 431
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=57.83 E-value=1.9e+02 Score=28.29 Aligned_cols=29 Identities=28% Similarity=0.280 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 001692 656 AESKIVQLKTAMHRLEEKVSDMETENQIL 684 (1027)
Q Consensus 656 ~~~~~~~l~~~~~~Lee~l~~le~e~~~L 684 (1027)
.+..+++|=--+.++++++.+.+..+..|
T Consensus 82 ~q~EldDLL~ll~Dle~K~~kyk~rLk~L 110 (136)
T PF04871_consen 82 AQSELDDLLVLLGDLEEKRKKYKERLKEL 110 (136)
T ss_pred hhhhHHHHHHHHHhHHHHHHHHHHHHHHc
Confidence 34444444444555555555555555443
No 432
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=57.78 E-value=3.9e+02 Score=31.82 Aligned_cols=25 Identities=8% Similarity=0.392 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001692 610 VVEELTSENEKLKTLVSSLEKKIDE 634 (1027)
Q Consensus 610 ~~~~L~~e~~kLe~~l~~l~~~l~e 634 (1027)
.++.|..+...+..++.++......
T Consensus 286 ~i~~Lr~~~~~~~~~~~~l~~~~~~ 310 (458)
T COG3206 286 TIQDLRQQYAQVRQQIADLSTELGA 310 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4566666666666666665555544
No 433
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=57.68 E-value=1.3e+02 Score=26.33 Aligned_cols=23 Identities=9% Similarity=0.023 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 001692 622 KTLVSSLEKKIDETEKKFEETSK 644 (1027)
Q Consensus 622 e~~l~~l~~~l~elek~~~ele~ 644 (1027)
+..++.+++.+-.++-++--++.
T Consensus 6 e~~i~~L~KENF~LKLrI~fLee 28 (75)
T PF07989_consen 6 EEQIDKLKKENFNLKLRIYFLEE 28 (75)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHH
Confidence 33344444444444433333333
No 434
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=57.54 E-value=2.2e+02 Score=34.02 Aligned_cols=15 Identities=27% Similarity=0.361 Sum_probs=9.5
Q ss_pred hhhhhHhhhcCCCCC
Q 001692 142 IIALLDEACMFPRST 156 (1027)
Q Consensus 142 il~lLdee~~~~~~t 156 (1027)
.+-.|+|||..+..|
T Consensus 106 ~~~s~eee~~~s~ct 120 (518)
T PF10212_consen 106 QLKSLEEECESSLCT 120 (518)
T ss_pred HHHHHHhhcccccch
Confidence 445567777776554
No 435
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=57.52 E-value=16 Score=36.86 Aligned_cols=21 Identities=24% Similarity=0.523 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHHHHHhHHHHH
Q 001692 661 VQLKTAMHRLEEKVSDMETEN 681 (1027)
Q Consensus 661 ~~l~~~~~~Lee~l~~le~e~ 681 (1027)
+.|..++++|++++++|+.|+
T Consensus 27 E~L~~~~QRLkDE~RDLKqEl 47 (166)
T PF04880_consen 27 ENLREEVQRLKDELRDLKQEL 47 (166)
T ss_dssp HHHHHCH--------------
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 346777788888888888888
No 436
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=57.52 E-value=1.4e+02 Score=26.43 Aligned_cols=65 Identities=12% Similarity=0.273 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhHHHHHH
Q 001692 618 NEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHR----LEEKVSDMETENQ 682 (1027)
Q Consensus 618 ~~kLe~~l~~l~~~l~elek~~~ele~~~~~~~~~l~~~~~~~~~l~~~~~~----Lee~l~~le~e~~ 682 (1027)
++.++.+++.+-......+....+.+........++...+.++-+|+..-.. -|++|..|+.+++
T Consensus 6 Ld~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK~~YEeEI~rLr~eLe 74 (79)
T PF08581_consen 6 LDAIRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQAHRKMKQQYEEEIARLRRELE 74 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444455555555555555555666666555544433 3445555555543
No 437
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=57.48 E-value=1.5e+02 Score=26.82 Aligned_cols=43 Identities=12% Similarity=0.167 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 001692 635 TEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDM 677 (1027)
Q Consensus 635 lek~~~ele~~~~~~~~~l~~~~~~~~~l~~~~~~Lee~l~~l 677 (1027)
++..++.+......+..+|...+..+..++....++...|...
T Consensus 37 ~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a 79 (89)
T PF13747_consen 37 LEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDSA 79 (89)
T ss_pred HHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445555555555555555555555555554444444433
No 438
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=57.24 E-value=2.3e+02 Score=29.01 Aligned_cols=17 Identities=18% Similarity=0.255 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 001692 563 AKLQSALQEMQLQFKES 579 (1027)
Q Consensus 563 ~~L~~~l~~le~~l~~~ 579 (1027)
.-|+++++-|...+..+
T Consensus 74 slLEKQLeyMRkmv~~a 90 (178)
T PF14073_consen 74 SLLEKQLEYMRKMVESA 90 (178)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444333
No 439
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=56.94 E-value=4.2e+02 Score=31.85 Aligned_cols=8 Identities=38% Similarity=0.443 Sum_probs=3.3
Q ss_pred chhhhhhc
Q 001692 285 NVLQQLRC 292 (1027)
Q Consensus 285 ~V~~QLr~ 292 (1027)
-...|+|.
T Consensus 24 ~t~~~i~~ 31 (489)
T PF05262_consen 24 ETAQQIRG 31 (489)
T ss_pred hHHHHHHH
Confidence 33444443
No 440
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=56.60 E-value=70 Score=33.23 Aligned_cols=28 Identities=4% Similarity=0.196 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 001692 652 QALEAESKIVQLKTAMHRLEEKVSDMET 679 (1027)
Q Consensus 652 ~l~~~~~~~~~l~~~~~~Lee~l~~le~ 679 (1027)
++++.++++...+.++..|+.+.+.+++
T Consensus 162 ei~~lk~el~~~~~~~~~LkkQ~~~l~~ 189 (192)
T PF05529_consen 162 EIEKLKKELEKKEKEIEALKKQSEGLQK 189 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333333333344444444444444443
No 441
>KOG4427 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=56.57 E-value=15 Score=44.68 Aligned_cols=18 Identities=33% Similarity=0.388 Sum_probs=8.9
Q ss_pred hhhHHHHHHHHhhhhhhh
Q 001692 399 RSAIHIQAACRGQLARTV 416 (1027)
Q Consensus 399 ~a~i~iQ~~~Rg~laR~~ 416 (1027)
+|++.||++||||++|++
T Consensus 31 ~aa~~iq~~lrsyl~Rkk 48 (1096)
T KOG4427|consen 31 AAALFIQRVLRSYLVRKK 48 (1096)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344455555555555443
No 442
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=56.33 E-value=16 Score=29.85 Aligned_cols=31 Identities=35% Similarity=0.574 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHhc
Q 001692 658 SKIVQLKTAMHRLEEKVSDMETENQILRQQS 688 (1027)
Q Consensus 658 ~~~~~l~~~~~~Lee~l~~le~e~~~L~qq~ 688 (1027)
+.++.|++.+.+|++++..|+.||..|++.+
T Consensus 14 EEVevLK~~I~eL~~~n~~Le~EN~~Lk~~~ 44 (59)
T PF01166_consen 14 EEVEVLKEQIAELEERNSQLEEENNLLKQNA 44 (59)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4566788889999999999999999999854
No 443
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=56.33 E-value=1.9e+02 Score=27.75 Aligned_cols=31 Identities=16% Similarity=0.398 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001692 656 AESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1027)
Q Consensus 656 ~~~~~~~l~~~~~~Lee~l~~le~e~~~L~q 686 (1027)
.+++++.+++.+..+++.+.++.+++..+..
T Consensus 92 l~~r~~~l~~~~~~l~~~l~~l~~~~~~~~~ 122 (129)
T cd00584 92 LDKKIEELTKQIEKLQKELAKLKDQINTLEA 122 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555556666666666666665555443
No 444
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=55.98 E-value=2.6e+02 Score=29.11 Aligned_cols=59 Identities=14% Similarity=0.202 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001692 617 ENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVS 675 (1027)
Q Consensus 617 e~~kLe~~l~~l~~~l~elek~~~ele~~~~~~~~~l~~~~~~~~~l~~~~~~Lee~l~ 675 (1027)
+...|...+...+..+...+........+..+...-|+.++..++.|...+...+..+.
T Consensus 110 q~~~L~~~l~~a~~nl~~a~~~a~~AQ~el~eK~qLLeaAk~Rve~L~~QL~~Ar~D~~ 168 (188)
T PF05335_consen 110 QLETLKAALKAAQANLANAEQVAEGAQQELAEKTQLLEAAKRRVEELQRQLQAARADYE 168 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444554444444444444444444444445555444444444433333
No 445
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=55.77 E-value=1.8e+02 Score=33.32 Aligned_cols=28 Identities=21% Similarity=0.260 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001692 626 SSLEKKIDETEKKFEETSKISEERLKQA 653 (1027)
Q Consensus 626 ~~l~~~l~elek~~~ele~~~~~~~~~l 653 (1027)
+.|+....++.+++++.-.++++.+.+|
T Consensus 154 erL~~e~~~~~~qlE~~v~~K~~~E~~L 181 (342)
T PF06632_consen 154 ERLESEANKLLKQLEKFVNAKEEHEEDL 181 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333344444444444444443
No 446
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=54.92 E-value=2.7e+02 Score=28.98 Aligned_cols=25 Identities=8% Similarity=0.069 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 001692 652 QALEAESKIVQLKTAMHRLEEKVSD 676 (1027)
Q Consensus 652 ~l~~~~~~~~~l~~~~~~Lee~l~~ 676 (1027)
++..+...++...+++-.|+.=+.+
T Consensus 143 ~~~~~~~~anrwTDNI~~l~~~~~~ 167 (188)
T PF03962_consen 143 EIKIAKEAANRWTDNIFSLKSYLKK 167 (188)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 3334444445555555544444433
No 447
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=54.69 E-value=1.9e+02 Score=27.12 Aligned_cols=21 Identities=24% Similarity=0.240 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 001692 612 EELTSENEKLKTLVSSLEKKI 632 (1027)
Q Consensus 612 ~~L~~e~~kLe~~l~~l~~~l 632 (1027)
..|...+..++..++.+...+
T Consensus 75 ~~l~~q~~~l~~~l~~l~~~~ 95 (127)
T smart00502 75 KVLEQQLESLTQKQEKLSHAI 95 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444443333333
No 448
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=54.69 E-value=98 Score=31.12 Aligned_cols=62 Identities=13% Similarity=0.138 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001692 626 SSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1027)
Q Consensus 626 ~~l~~~l~elek~~~ele~~~~~~~~~l~~~~~~~~~l~~~~~~Lee~l~~le~e~~~L~qq 687 (1027)
+.+-.....++..+....+.+..+..++...+..+....+.+.+|+..+..++.+++.+..+
T Consensus 23 e~ll~~~~~LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~ 84 (160)
T PF13094_consen 23 EQLLDRKRALERQLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEKK 84 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33334444444444444444444444444555555555555555555566666655555443
No 449
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=54.41 E-value=83 Score=29.51 Aligned_cols=16 Identities=38% Similarity=0.476 Sum_probs=6.0
Q ss_pred HHHHHHhHHHHHHHHH
Q 001692 670 LEEKVSDMETENQILR 685 (1027)
Q Consensus 670 Lee~l~~le~e~~~L~ 685 (1027)
|-++...|+-||+.|+
T Consensus 34 l~EEN~~L~~EN~~Lr 49 (107)
T PF06156_consen 34 LLEENARLRIENEHLR 49 (107)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 450
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=54.03 E-value=4.6e+02 Score=31.41 Aligned_cols=22 Identities=18% Similarity=0.457 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 001692 622 KTLVSSLEKKIDETEKKFEETS 643 (1027)
Q Consensus 622 e~~l~~l~~~l~elek~~~ele 643 (1027)
+..+.=+++.++..+++..+..
T Consensus 139 ~~ll~Pl~e~l~~f~~~v~~~~ 160 (475)
T PRK10361 139 NSLLSPLREQLDGFRRQVQDSF 160 (475)
T ss_pred HHHHhhHHHHHHHHHHHHHHHH
Confidence 3334444444444444444433
No 451
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.88 E-value=4.2e+02 Score=30.99 Aligned_cols=46 Identities=26% Similarity=0.419 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001692 511 RELRKLKMAARETGALQAAKNKLEKQVEELTWRLQLEKRMRVDMEE 556 (1027)
Q Consensus 511 kel~~l~~~a~~~~~L~~~k~~LE~kv~el~~rl~~e~~~~~ele~ 556 (1027)
.+++.+.-+..+...+++.-.+|+..-++.+.+.++.+.++.+++.
T Consensus 332 ~~l~~~e~e~~e~~~IqeleqdL~a~~eei~~~eel~~~Lrsele~ 377 (521)
T KOG1937|consen 332 EELKNLETEDEEIRRIQELEQDLEAVDEEIESNEELAEKLRSELEK 377 (521)
T ss_pred HHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhc
Confidence 3333333334445555555555555555555444455555555544
No 452
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=53.63 E-value=1.8e+02 Score=27.99 Aligned_cols=38 Identities=26% Similarity=0.473 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001692 529 AKNKLEKQVEELTWRLQLEKRMRVDMEEAKTQENAKLQSALQEMQLQFK 577 (1027)
Q Consensus 529 ~k~~LE~kv~el~~rl~~e~~~~~ele~~~~~e~~~L~~~l~~le~~l~ 577 (1027)
++.+||++..+|.+.++ ....|++.+..+++.++...+
T Consensus 75 Qk~eLE~~k~~L~qqv~-----------~L~~e~s~~~~E~da~k~k~e 112 (135)
T KOG4196|consen 75 QKHELEKEKAELQQQVE-----------KLKEENSRLRRELDAYKSKYE 112 (135)
T ss_pred HHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHH
Confidence 44556666555555444 333444444444444444443
No 453
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]
Probab=53.61 E-value=3.6e+02 Score=30.06 Aligned_cols=41 Identities=20% Similarity=0.246 Sum_probs=26.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001692 607 DHAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISE 647 (1027)
Q Consensus 607 ~~~~~~~L~~e~~kLe~~l~~l~~~l~elek~~~ele~~~~ 647 (1027)
-.++.++++.-+.+--.....+...++.+.+++..++++--
T Consensus 227 Y~aKyeefq~tl~KSNE~F~~fK~E~ekmtKk~kklEKE~l 267 (391)
T KOG1850|consen 227 YMAKYEEFQTTLAKSNELFTKFKQEMEKMTKKIKKLEKETL 267 (391)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666666666666666667777777777766666533
No 454
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=53.13 E-value=74 Score=28.43 Aligned_cols=59 Identities=15% Similarity=0.319 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 001692 616 SENEKLKTLVSSLEKKIDETEKKFEETS---KISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETEN 681 (1027)
Q Consensus 616 ~e~~kLe~~l~~l~~~l~elek~~~ele---~~~~~~~~~l~~~~~~~~~l~~~~~~Lee~l~~le~e~ 681 (1027)
.|++.++..+.+...+++..+.++...+ ...+ .+++....+.+.+...|+++..|..||
T Consensus 5 ~eId~lEekl~~cr~~le~ve~rL~~~eLs~e~R~-------~lE~E~~~l~~~l~~~E~eL~~LrkEN 66 (85)
T PF15188_consen 5 KEIDGLEEKLAQCRRRLEAVESRLRRRELSPEARR-------SLEKELNELKEKLENNEKELKLLRKEN 66 (85)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHcccCCChHHHH-------HHHHHHHHHHHHhhccHHHHHHHHHhh
Confidence 4555555556666555555554332211 1111 222333444445555555566666665
No 455
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=52.69 E-value=2.5e+02 Score=27.93 Aligned_cols=40 Identities=18% Similarity=0.335 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001692 608 HAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISE 647 (1027)
Q Consensus 608 ~~~~~~L~~e~~kLe~~l~~l~~~l~elek~~~ele~~~~ 647 (1027)
.+.++.|.+.+++|+..+..++..+.++.+....+.....
T Consensus 93 ~eAie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q 132 (145)
T COG1730 93 DEAIEFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQ 132 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555555555544444444444433
No 456
>PF14282 FlxA: FlxA-like protein
Probab=52.60 E-value=84 Score=29.35 Aligned_cols=31 Identities=13% Similarity=0.382 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001692 656 AESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1027)
Q Consensus 656 ~~~~~~~l~~~~~~Lee~l~~le~e~~~L~q 686 (1027)
.+.++..|+.++..|+.+|..++.+......
T Consensus 49 k~~q~q~Lq~QI~~LqaQI~qlq~q~~~~~~ 79 (106)
T PF14282_consen 49 KQQQIQLLQAQIQQLQAQIAQLQSQQAEQQQ 79 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666777777777766666654443
No 457
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=52.43 E-value=3.1e+02 Score=28.97 Aligned_cols=19 Identities=16% Similarity=0.298 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 001692 524 GALQAAKNKLEKQVEELTW 542 (1027)
Q Consensus 524 ~~L~~~k~~LE~kv~el~~ 542 (1027)
..+...+...+.++.+|+.
T Consensus 74 ~~~~~~k~~qe~eI~~Le~ 92 (206)
T PF14988_consen 74 KEFRRLKEQQEREIQTLEE 92 (206)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444443
No 458
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=52.21 E-value=1.4e+02 Score=32.83 Aligned_cols=73 Identities=14% Similarity=0.171 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHhHHHHHH
Q 001692 613 ELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAES----------KIVQLKTAMHRLEEKVSDMETENQ 682 (1027)
Q Consensus 613 ~L~~e~~kLe~~l~~l~~~l~elek~~~ele~~~~~~~~~l~~~~~----------~~~~l~~~~~~Lee~l~~le~e~~ 682 (1027)
.++..+.+|..+++-.++...=+++.....-.+.+++..-+.++++ .+.+.+.++++|.++-+-|+.|+.
T Consensus 4 d~QN~N~EL~kQiEIcqEENkiLdK~hRQKV~EVEKLsqTi~ELEEaiLagGaaaNavrdYqrq~~elneEkrtLeRELA 83 (351)
T PF07058_consen 4 DVQNQNQELMKQIEICQEENKILDKMHRQKVLEVEKLSQTIRELEEAILAGGAAANAVRDYQRQVQELNEEKRTLERELA 83 (351)
T ss_pred hhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555544444444444333333333333333333332 444666777777777777777765
Q ss_pred HHH
Q 001692 683 ILR 685 (1027)
Q Consensus 683 ~L~ 685 (1027)
..+
T Consensus 84 RaK 86 (351)
T PF07058_consen 84 RAK 86 (351)
T ss_pred Hhh
Confidence 544
No 459
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=51.77 E-value=94 Score=36.67 Aligned_cols=81 Identities=19% Similarity=0.184 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001692 608 HAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1027)
Q Consensus 608 ~~~~~~L~~e~~kLe~~l~~l~~~l~elek~~~ele~~~~~~~~~l~~~~~~~~~l~~~~~~Lee~l~~le~e~~~L~qq 687 (1027)
-+++-.+..+..++..++++++.+....-+++..+.+..++ +.+.+.++...+.+++..+++++..+++++..+-..
T Consensus 29 vd~i~~ld~~~r~~~~~~~~l~~erN~~sk~i~~~~~~~~~---~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 105 (418)
T TIGR00414 29 LEKLIALDDERKKLLSEIEELQAKRNELSKQIGKAKGQKKD---KIEEIKKELKELKEELTELSAALKALEAELQDKLLS 105 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35566677777777777777777777766666553322211 023444455566667777777777777777665554
Q ss_pred cccc
Q 001692 688 SLLS 691 (1027)
Q Consensus 688 ~~~~ 691 (1027)
..+.
T Consensus 106 lPN~ 109 (418)
T TIGR00414 106 IPNI 109 (418)
T ss_pred CCCC
Confidence 4433
No 460
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=51.45 E-value=42 Score=40.99 Aligned_cols=34 Identities=29% Similarity=0.420 Sum_probs=23.8
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 001692 466 RFRRQTRASILIQSHCRKYLARLHYMKLKKAAIT 499 (1027)
Q Consensus 466 ~~~r~~~aa~~IQ~~~R~~~~r~~~~~~~~a~i~ 499 (1027)
+.+.=..-|.+||+.||.+.+|+.|.+++..+..
T Consensus 691 Rer~~d~~A~~IQkAWRrfv~rrky~k~ree~t~ 724 (1106)
T KOG0162|consen 691 RERKWDGMARRIQKAWRRFVARRKYEKMREEATK 724 (1106)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445677888888888888888777765543
No 461
>PLN02320 seryl-tRNA synthetase
Probab=51.44 E-value=84 Score=37.72 Aligned_cols=78 Identities=19% Similarity=0.119 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhc
Q 001692 609 AVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQS 688 (1027)
Q Consensus 609 ~~~~~L~~e~~kLe~~l~~l~~~l~elek~~~ele~~~~~~~~~l~~~~~~~~~l~~~~~~Lee~l~~le~e~~~L~qq~ 688 (1027)
+++-.+..+..++..++++++.+..+.-+++.. ... ..+.+.+.++...+.+++..|++++..+++++..+-...
T Consensus 93 d~l~~ld~~~r~~~~~~~~lr~ern~~sk~i~~-~~~----~~~~~~l~~~~k~lk~~i~~le~~~~~~~~~l~~~~l~i 167 (502)
T PLN02320 93 ELVLELYENMLALQKEVERLRAERNAVANKMKG-KLE----PSERQALVEEGKNLKEGLVTLEEDLVKLTDELQLEAQSI 167 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhC----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 445555666666666666666666666655544 111 112334445566677777778888888888777766555
Q ss_pred ccc
Q 001692 689 LLS 691 (1027)
Q Consensus 689 ~~~ 691 (1027)
.+.
T Consensus 168 PN~ 170 (502)
T PLN02320 168 PNM 170 (502)
T ss_pred CCC
Confidence 444
No 462
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=51.27 E-value=1.1e+02 Score=30.69 Aligned_cols=18 Identities=44% Similarity=0.586 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 001692 616 SENEKLKTLVSSLEKKID 633 (1027)
Q Consensus 616 ~e~~kLe~~l~~l~~~l~ 633 (1027)
.++..|+.++..++.+++
T Consensus 104 ~e~~~l~~e~~~l~~~~e 121 (161)
T TIGR02894 104 KENERLKNQNESLQKRNE 121 (161)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 463
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=51.22 E-value=1e+02 Score=29.07 Aligned_cols=42 Identities=24% Similarity=0.262 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001692 645 ISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1027)
Q Consensus 645 ~~~~~~~~l~~~~~~~~~l~~~~~~Lee~l~~le~e~~~L~q 686 (1027)
..+-+..+++.+++.+..++.++..++.++..++..+..+.+
T Consensus 78 A~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~ 119 (120)
T PF02996_consen 78 AIEFLKKRIKELEEQLEKLEKELAELQAQIEQLEQTLQQLYQ 119 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 333344455555556666666666666666666666655544
No 464
>KOG0942 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=51.21 E-value=17 Score=45.46 Aligned_cols=29 Identities=24% Similarity=0.277 Sum_probs=22.2
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHhhh
Q 001692 466 RFRRQTRASILIQSHCRKYLARLHYMKLK 494 (1027)
Q Consensus 466 ~~~r~~~aa~~IQ~~~R~~~~r~~~~~~~ 494 (1027)
+.++++++|+++|++|||+.+|++.+..-
T Consensus 24 e~rk~e~~av~vQs~~Rg~~~r~~~~~~~ 52 (1001)
T KOG0942|consen 24 EERKQEKNAVKVQSFWRGFRVRHNQKLLF 52 (1001)
T ss_pred HHHHHhccchHHHHHHHHHHHHHHHHHHH
Confidence 34566778899999999999888766553
No 465
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=50.97 E-value=5.6e+02 Score=31.57 Aligned_cols=11 Identities=9% Similarity=0.129 Sum_probs=4.6
Q ss_pred HHHHHHHHhhc
Q 001692 797 RLIQMIGSAIE 807 (1027)
Q Consensus 797 ~i~~~I~~~i~ 807 (1027)
.|+......+.
T Consensus 525 ~ilarae~~l~ 535 (582)
T PF09731_consen 525 SILARAEYYLE 535 (582)
T ss_pred HHHHHHHHHHH
Confidence 34444444444
No 466
>KOG4001 consensus Axonemal dynein light chain [Cytoskeleton]
Probab=50.58 E-value=1.5e+02 Score=30.64 Aligned_cols=68 Identities=25% Similarity=0.228 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 001692 608 HAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQA-LEAESKIVQLKTAMHRLEEKVS 675 (1027)
Q Consensus 608 ~~~~~~L~~e~~kLe~~l~~l~~~l~elek~~~ele~~~~~~~~~l-~~~~~~~~~l~~~~~~Lee~l~ 675 (1027)
+..-..++.+.+.|+..-.+|+..+.+++++.+..+...++...-- +...+.+.-|.+.+..|+.++.
T Consensus 184 e~ek~~~~~~~k~le~~k~~Le~~ia~~k~K~e~~e~r~~E~r~ieEkk~~eei~fLk~tN~qLKaQLe 252 (259)
T KOG4001|consen 184 ENEKTRATTEWKVLEDKKKELELKIAQLKKKLETDEIRSEEEREIEEKKMKEEIEFLKETNRQLKAQLE 252 (259)
T ss_pred hhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 467
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=50.58 E-value=3.9e+02 Score=29.63 Aligned_cols=134 Identities=14% Similarity=0.137 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhh
Q 001692 531 NKLEKQVEELTWRLQ---LEKRMRVDMEEAKTQENAKLQSALQEMQLQFKESKEKLMKEIEVAKKEAEKVPVVQEVPVID 607 (1027)
Q Consensus 531 ~~LE~kv~el~~rl~---~e~~~~~ele~~~~~e~~~L~~~l~~le~~l~~~~~~l~~e~~~~~~~~ee~~~~~e~~~~~ 607 (1027)
.++.++-.||..+++ +|-+....+...+..|+++|...+.+|+..+-.--+....-..-
T Consensus 3 dd~QN~N~EL~kQiEIcqEENkiLdK~hRQKV~EVEKLsqTi~ELEEaiLagGaaaNavrdY------------------ 64 (351)
T PF07058_consen 3 DDVQNQNQELMKQIEICQEENKILDKMHRQKVLEVEKLSQTIRELEEAILAGGAAANAVRDY------------------ 64 (351)
T ss_pred hhhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHH------------------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001692 608 HAVVEELTSENEKLKTLVSSLEKKIDETE---------------------KKFEETSKISEERLKQALEAESKIVQLKTA 666 (1027)
Q Consensus 608 ~~~~~~L~~e~~kLe~~l~~l~~~l~ele---------------------k~~~ele~~~~~~~~~l~~~~~~~~~l~~~ 666 (1027)
..++.+|..++.-|+.+|.-.+-.....- +++.=++.+...+..+|..++.....--.-
T Consensus 65 qrq~~elneEkrtLeRELARaKV~aNRVA~vvANEWKD~nDkvMPVKqWLEERR~lQgEmQ~LrDKLAiaERtAkaEaQL 144 (351)
T PF07058_consen 65 QRQVQELNEEKRTLERELARAKVSANRVATVVANEWKDENDKVMPVKQWLEERRFLQGEMQQLRDKLAIAERTAKAEAQL 144 (351)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcccccccCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHhHHHHHH
Q 001692 667 MHRLEEKVSDMETENQ 682 (1027)
Q Consensus 667 ~~~Lee~l~~le~e~~ 682 (1027)
+..++-.++-|++.+.
T Consensus 145 keK~klRLK~LEe~Lk 160 (351)
T PF07058_consen 145 KEKLKLRLKVLEEGLK 160 (351)
T ss_pred HHHHHHHHHHHHhhcc
No 468
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=50.43 E-value=95 Score=28.45 Aligned_cols=76 Identities=16% Similarity=0.216 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHH
Q 001692 609 AVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALE-------------------AESKIVQLKTAMHR 669 (1027)
Q Consensus 609 ~~~~~L~~e~~kLe~~l~~l~~~l~elek~~~ele~~~~~~~~~l~~-------------------~~~~~~~l~~~~~~ 669 (1027)
+...+|...+.-.+.+-+-+..++.+++.+...+..+..+...+..+ ++..+...+.++..
T Consensus 1 E~~aeLR~qLqFvEEEa~LlRRkl~ele~eN~~l~~EL~kyk~~~g~~d~~~~~~~g~~~~~~~~~l~~eLk~a~~qi~~ 80 (96)
T PF11365_consen 1 EDSAELRRQLQFVEEEAELLRRKLSELEDENKQLTEELNKYKSKYGDLDSLAKLSEGGSPSGREAELQEELKLAREQINE 80 (96)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCCCccccHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHhHHHHHHHH
Q 001692 670 LEEKVSDMETENQIL 684 (1027)
Q Consensus 670 Lee~l~~le~e~~~L 684 (1027)
|..++.+|+-||..+
T Consensus 81 Ls~kv~eLq~ENRvl 95 (96)
T PF11365_consen 81 LSGKVMELQYENRVL 95 (96)
T ss_pred HhhHHHHHhhccccc
No 469
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=50.39 E-value=1.4e+02 Score=36.29 Aligned_cols=77 Identities=16% Similarity=0.102 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001692 608 HAVVEELTSENEKLKTLVSSLEKKIDETEKKF------------------EETSKISEERLKQALEAESKIVQLKTAMHR 669 (1027)
Q Consensus 608 ~~~~~~L~~e~~kLe~~l~~l~~~l~elek~~------------------~ele~~~~~~~~~l~~~~~~~~~l~~~~~~ 669 (1027)
++++..++.++..++.+++.++..+.-++... .++.+...-..+++.++...+.+++.++.+
T Consensus 77 ~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (525)
T TIGR02231 77 RKQIRELEAELRDLEDRGDALKALAKFLEDIREGLTEPIKDSAKRNEPDLKEWFQAFDFNGSEIERLLTEDREAERRIRE 156 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHhHHHHHHHH
Q 001692 670 LEEKVSDMETENQIL 684 (1027)
Q Consensus 670 Lee~l~~le~e~~~L 684 (1027)
+++++..++.++..+
T Consensus 157 ~~~~l~~l~~~l~~l 171 (525)
T TIGR02231 157 LEKQLSELQNELNAL 171 (525)
T ss_pred HHHHHHHHHHHHHhh
No 470
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=50.35 E-value=90 Score=26.79 Aligned_cols=51 Identities=14% Similarity=0.327 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001692 625 VSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVS 675 (1027)
Q Consensus 625 l~~l~~~l~elek~~~ele~~~~~~~~~l~~~~~~~~~l~~~~~~Lee~l~ 675 (1027)
+.+.++++.+.+..+.+.++....++......+.++..+..++.++++..+
T Consensus 1 ~~~i~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n~k 51 (71)
T PF10779_consen 1 LQDIKEKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKIKSNTK 51 (71)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 471
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=50.34 E-value=3.6e+02 Score=29.09 Aligned_cols=168 Identities=17% Similarity=0.165 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHH
Q 001692 509 ARRELRKLKMAARETGALQAAKNKLEKQVEELTWRLQLEKRMRVDMEEAKTQE------------NAKLQSALQEMQLQF 576 (1027)
Q Consensus 509 arkel~~l~~~a~~~~~L~~~k~~LE~kv~el~~rl~~e~~~~~ele~~~~~e------------~~~L~~~l~~le~~l 576 (1027)
+-.-+...+........++.........+.+++..+. ..... ...|+.++......+
T Consensus 26 al~~L~~~~~~~~~~~~~~~~i~~aP~~~~~l~~~l~-----------~l~~~~~~~~~~~~~~s~~eLeq~l~~~~~~L 94 (240)
T PF12795_consen 26 ALSFLDEIKKQKKRAAEYQKQIDQAPKEIRELQKELE-----------ALKSQDAPSKEILANLSLEELEQRLSQEQAQL 94 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-----------hhhccccccccCcccCCHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001692 577 KESKEKLMKEIEVAKKEAEKVPVVQEVPVIDHAVVEELTSENEKL---------KTLVSSLEKKIDETEKKFEETSKISE 647 (1027)
Q Consensus 577 ~~~~~~l~~e~~~~~~~~ee~~~~~e~~~~~~~~~~~L~~e~~kL---------e~~l~~l~~~l~elek~~~ele~~~~ 647 (1027)
..+...+................+............+++..+..+ +.....++.+..-++.++..++.+..
T Consensus 95 ~~~q~~l~~~~~~l~~~~~~p~~aq~~l~~~~~~l~ei~~~L~~~~~~~~~~l~~a~~~~l~ae~~~l~~~~~~le~el~ 174 (240)
T PF12795_consen 95 QELQEQLQQENSQLIEIQTRPERAQQQLSEARQRLQEIRNQLQNLPPNGESPLSEAQRWLLQAELAALEAQIEMLEQELL 174 (240)
T ss_pred HHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001692 648 ERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1027)
Q Consensus 648 ~~~~~l~~~~~~~~~l~~~~~~Lee~l~~le~e~~~L~qq 687 (1027)
-.-...+-.+.+.+.+...+..++..+..|+..+...+..
T Consensus 175 s~~~rq~L~~~qrdl~~~~~~~l~~~l~~Lq~~ln~~R~~ 214 (240)
T PF12795_consen 175 SNNNRQELLQLQRDLLKARIQRLQQQLQALQNLLNQKRRQ 214 (240)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 472
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=50.33 E-value=1.5e+02 Score=25.59 Aligned_cols=61 Identities=11% Similarity=0.105 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhccccCcc
Q 001692 634 ETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQSLLSTPI 694 (1027)
Q Consensus 634 elek~~~ele~~~~~~~~~l~~~~~~~~~l~~~~~~Lee~l~~le~e~~~L~qq~~~~~~~ 694 (1027)
++++.+.+|+-...-.+.-++++-..+.+.+..+..++.+++-|-+.+..++.++....+.
T Consensus 5 ~lE~Ri~eLE~r~AfQE~tieeLn~~laEq~~~i~k~q~qlr~L~~kl~~~~~~~~~~~~~ 65 (72)
T COG2900 5 ELEARIIELEIRLAFQEQTIEELNDALAEQQLVIDKLQAQLRLLTEKLKDLQPSAIASPAE 65 (72)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCcc
No 473
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=50.14 E-value=1.5e+02 Score=33.49 Aligned_cols=73 Identities=22% Similarity=0.310 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHhHHHHHHHH
Q 001692 613 ELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRL--------EEKVSDMETENQIL 684 (1027)
Q Consensus 613 ~L~~e~~kLe~~l~~l~~~l~elek~~~ele~~~~~~~~~l~~~~~~~~~l~~~~~~L--------ee~l~~le~e~~~L 684 (1027)
+..+|-+.|+++..++++.-..-.++.+++.+.-..-.+.+..-...+.++...++++ .+.++++++++...
T Consensus 1 e~~eEW~eL~~efq~Lqethr~Y~qKleel~~lQ~~C~ssI~~QkkrLk~L~~sLk~~~~~~~~e~~~~i~~L~~~Ik~r 80 (330)
T PF07851_consen 1 ECEEEWEELQKEFQELQETHRSYKQKLEELSKLQDKCSSSISHQKKRLKELKKSLKRCKKSLSAEERELIEKLEEDIKER 80 (330)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHH
Q ss_pred H
Q 001692 685 R 685 (1027)
Q Consensus 685 ~ 685 (1027)
+
T Consensus 81 ~ 81 (330)
T PF07851_consen 81 R 81 (330)
T ss_pred H
No 474
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=50.03 E-value=5e+02 Score=30.72 Aligned_cols=136 Identities=11% Similarity=0.087 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchh
Q 001692 527 QAAKNKLEKQVEELTWRLQLEKRMRVDMEEAKTQENAKLQSALQEMQLQFKESKEKLMKEIEVAKKEAEKVPVVQEVPVI 606 (1027)
Q Consensus 527 ~~~k~~LE~kv~el~~rl~~e~~~~~ele~~~~~e~~~L~~~l~~le~~l~~~~~~l~~e~~~~~~~~ee~~~~~e~~~~ 606 (1027)
+.....-|.-|.+|..+.. +..+.-.+.+++.++.++.....++..-..+...+.
T Consensus 222 ~aLL~~sE~~VN~Ls~rar--------------------~D~v~~Ae~ev~~Ae~rl~~Ar~aL~~fRn~~gvlD----- 276 (434)
T PRK15178 222 QRILSFAEQHVNTVSARMQ--------------------KERILWLENDVKSAQENLGAARLELLKIQHIQKDID----- 276 (434)
T ss_pred HHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcC-----
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHH---HhH
Q 001692 607 DHAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMH------RLEEKV---SDM 677 (1027)
Q Consensus 607 ~~~~~~~L~~e~~kLe~~l~~l~~~l~elek~~~ele~~~~~~~~~l~~~~~~~~~l~~~~~------~Lee~l---~~l 677 (1027)
.+...+.....+.+|+.++.+++.++..+......-.-....+..++..++.++...+..+. .+-..+ ..|
T Consensus 277 P~~~a~~~~~lI~~Le~qLa~~~aeL~~L~~~~~p~sPqV~~l~~rI~aLe~QIa~er~kl~~~~g~~~la~~laeYe~L 356 (434)
T PRK15178 277 PKETITAIYQLIAGFETQLAEAKAEYAQLMVNGLDQNPLIPRLSAKIKVLEKQIGEQRNRLSNKLGSQGSSESLSLFEDL 356 (434)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHH
Q ss_pred HHHHHHHHHh
Q 001692 678 ETENQILRQQ 687 (1027)
Q Consensus 678 e~e~~~L~qq 687 (1027)
.-+.+-.++.
T Consensus 357 ~le~efAe~~ 366 (434)
T PRK15178 357 RLQSEIAKAR 366 (434)
T ss_pred HHHHHHHHHH
No 475
>KOG3478 consensus Prefoldin subunit 6, KE2 family [Posttranslational modification, protein turnover, chaperones]
Probab=49.81 E-value=2.2e+02 Score=26.56 Aligned_cols=101 Identities=16% Similarity=0.179 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHH
Q 001692 583 LMKEIEVAKKEAEKVPVVQEVPVIDHAVVEELTSENEKLKTLVSSLEKKIDETE---------------KKFEETSKISE 647 (1027)
Q Consensus 583 l~~e~~~~~~~~ee~~~~~e~~~~~~~~~~~L~~e~~kLe~~l~~l~~~l~ele---------------k~~~ele~~~~ 647 (1027)
+.++++......+.+ +..+...-....+|+.++.+-+-=++++. --..+++....
T Consensus 3 ~~~kmee~~~kyq~L----------Qk~l~k~~~~rqkle~qL~Enk~V~~Eldlle~d~~VYKliGpvLvkqel~EAr~ 72 (120)
T KOG3478|consen 3 LQKKMEEEANKYQNL----------QKELEKYVESRQKLETQLQENKIVLEELDLLEEDSNVYKLIGPVLVKQELEEART 72 (120)
T ss_pred hHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcccchHHHHhcchhhHHHHHHHHh
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhccccCc
Q 001692 648 ERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQSLLSTP 693 (1027)
Q Consensus 648 ~~~~~l~~~~~~~~~l~~~~~~Lee~l~~le~e~~~L~qq~~~~~~ 693 (1027)
-..++++=....+.+++..+.+++++..+.++.+-.+++++....|
T Consensus 73 nV~kRlefI~~Eikr~e~~i~d~q~e~~k~R~~v~k~Q~~~q~~~~ 118 (120)
T KOG3478|consen 73 NVGKRLEFISKEIKRLENQIRDSQEEFEKQREAVIKLQQAAQPAAP 118 (120)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccC
No 476
>PF09763 Sec3_C: Exocyst complex component Sec3; InterPro: IPR019160 The exocyst complex is composed of 8 subunits: Exoc1, Exoc2, Exoc3, Exoc4, Exoc5, Exoc6, Exoc7 and Exoc8. This entry represents the subunit Exoc1 (Sec3). Sec3 binds to the C-terminal cytoplasmic domain of GLYT1 (glycine transporter protein 1). Sec3 is the exocyst component that is closest to the plasma membrane docking site and it serves as a spatial landmark in the plasma membrane for incoming secretory vesicles. Sec3 is recruited to the sites of polarised membrane growth through its interaction with Rho1p, a small GTP-binding protein.
Probab=49.75 E-value=6.5e+02 Score=31.92 Aligned_cols=273 Identities=18% Similarity=0.185 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001692 608 HAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1027)
Q Consensus 608 ~~~~~~L~~e~~kLe~~l~~l~~~l~elek~~~ele~~~~~~~~~l~~~~~~~~~l~~~~~~Lee~l~~le~e~~~L~qq 687 (1027)
+.-.+.|.+++..++... -..+-+.+....++....++...++++.+..+......+..+.+.+...|.+++.|+-+
T Consensus 4 d~~~~~L~~eL~~le~~n---i~~l~~s~~~v~~l~~~ld~a~~e~d~le~~l~~y~~~L~~~~~di~~IE~qn~~Lqvq 80 (701)
T PF09763_consen 4 DAFEERLSKELSALEAAN---IHSLLESEKQVNSLMEYLDEALAECDELESWLSLYDVELNSVRDDIEYIESQNNGLQVQ 80 (701)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhH
Q ss_pred ccccCcccccccccCCCcccCCCCCCCcccccCCCCCCCCCCcccCCCCcchHhhhhhh--hhhhhhHHHHHHHhhhccC
Q 001692 688 SLLSTPIKKMSEHISAPATQSLENGHHVIEENISNEPQSATPVKKLGTESDSKLRRSHI--EHQHENVDALINCVAKNLG 765 (1027)
Q Consensus 688 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--e~~~e~~~~Ll~~i~~~~~ 765 (1027)
..+...- -.++..++. +-.+++++.|.. .++.
T Consensus 81 ~~N~k~L-------------------------------------------~~eL~~Ll~~l~i~~~~l~~L~~---~~l~ 114 (701)
T PF09763_consen 81 SANQKLL-------------------------------------------LNELENLLDTLSIPEEHLEALRN---ASLS 114 (701)
T ss_pred HHHHHHH-------------------------------------------HHHHHHHHHhcCCCHHHHHHHhc---CCCC
Q ss_pred CCCCCc---hhHHHHHHHHhh------h---------------hhhhhhhhHHHHHHHHHHHHhh---------------
Q 001692 766 YCNGKP---VAAFTIYKCLLH------W---------------KSFEAERTSVFDRLIQMIGSAI--------------- 806 (1027)
Q Consensus 766 ~~~~~p---~pA~ii~~c~~~------~---------------~~~~~~~~~ll~~i~~~I~~~i--------------- 806 (1027)
-.++.+ .+|-.||.++.. . ..|+.....|..++..-+...+
T Consensus 115 ~~~~l~~~e~a~~~L~~Al~~i~~~~~~~~~~~~~M~Av~er~~~~~~~~~~F~~r~~~~l~~~F~~~~~~~~~~~~~~~ 194 (701)
T PF09763_consen 115 SPDGLEKIEEAAEALYKALKAIRPDLEKLDPGLGQMRAVKERREEYEKVSDKFCKRLSRFLNNMFKNLVDELLSDKDSFS 194 (701)
T ss_pred CcccHHHHHHHHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q ss_pred ---c-ccCCCcccchhhhhHHHHHHHHHHHHhhcCCCCCCCCCCCCCcccchhhcccccCCCCCchhhhhhhHHHHHHHH
Q 001692 807 ---E-NEDDNDHMAYWLSNTSTLLFLLQRSLKAAGASGATPHKKPPTATSLFGRMAMGFRSSPSSANLAAAAALAVVRQV 882 (1027)
Q Consensus 807 ---~-~~~~~~~lafWLsN~~~Ll~~lq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 882 (1027)
+ .......+--.|.--+.|.++++.. + ...+..+
T Consensus 195 ~~~~~~~~~h~~~~~~L~~ys~Li~~lK~~-----------------------------------------d-~~~y~~L 232 (701)
T PF09763_consen 195 QSGKLSLPKHSSLHNELLPYSGLILWLKEV-----------------------------------------D-PESYQAL 232 (701)
T ss_pred ccccCChHHHHHHHHHHHhHHHHHHHHHHc-----------------------------------------C-HHHHHHH
Q ss_pred hhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCCCC--------CcccCCCCCCCCCccccHH-----
Q 001692 883 EAKYPALLFKQQLAAYVEKIYGIIRDNLKKELSSLLSLCIQAPRTSKG--------SVLRSGRSFGKDSASSHWQ----- 949 (1027)
Q Consensus 883 ~~~~~~~~f~q~L~~~~~~iy~~l~~~~~k~L~~~l~~~i~~~~~~~~--------~~~~~~~~~~~~~~~~~~~----- 949 (1027)
.. .|.+.+..+-..-+..++..++..+...-..--+.+.+..+ .+.+.++......+...-.
T Consensus 233 ~~-----~Y~~~~~~ly~~e~~~~~~~~k~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~sr~~~~~~s~~~~~~~~~~ 307 (701)
T PF09763_consen 233 IK-----AYNSSMSKLYEREIRDFFEALKKSISKASGDENDESLFTSSSPELSTEWISLRKSRKLTLDRSKTLRNIDMWA 307 (701)
T ss_pred HH-----HHHHHHHHHHHHHHHHHHHHHHHHhhccCcchhhhhcccccccchhcccccccccccccCCCCccchhccccc
Q ss_pred ---------HHHHHHHHHHHHH-HhCCCCHHHHHHHH
Q 001692 950 ---------SIIDSLNTLLSTL-KQNFVPPVLVQKIF 976 (1027)
Q Consensus 950 ---------~il~~L~~~~~~l-~~~~v~~~l~~Q~f 976 (1027)
.....|..++..+ ..+.....++..+|
T Consensus 308 ~~~~~~~~~~~~~a~~~~L~el~pl~~~EQ~Fi~~FF 344 (701)
T PF09763_consen 308 PSPKSSGKLRFDEAFEQALEELEPLCIREQNFIIDFF 344 (701)
T ss_pred CCCCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 477
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=49.64 E-value=1.2e+02 Score=30.39 Aligned_cols=56 Identities=23% Similarity=0.230 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001692 612 EELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAM 667 (1027)
Q Consensus 612 ~~L~~e~~kLe~~l~~l~~~l~elek~~~ele~~~~~~~~~l~~~~~~~~~l~~~~ 667 (1027)
..+..++..|+.++..++.+++.+++++.++++.....+.+-+.+-.-+++...-+
T Consensus 100 ~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~RARkl~ 155 (161)
T TIGR02894 100 QALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMDRARKLA 155 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 478
>PF04437 RINT1_TIP1: RINT-1 / TIP-1 family; InterPro: IPR007528 This family includes RINT-1, a Rad50 interacting protein which participates in radiation induced checkpoint control [], that interacts with Rad50 only during late S and G2/M phases. RINT1 also functions in membrane trafficking from the endoplasmic reticulum(ER) to the Golgi complex in interphase cells [, , ]. In addition to this, the TIP-1 protein, which is involved in the retrograde transport from the Golgi to the ER []. They share a similar domain organisation with an N-terminal leucine heptad repeat rich coiled coil and an ~500-residue C-terminal RINT1/TIP20 domain, which might be a protein-protein interaction module necessary for the formation of functional complexes.; PDB: 3FHN_A.
Probab=49.07 E-value=1.3e+02 Score=36.47 Aligned_cols=114 Identities=17% Similarity=0.230 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-hhhcCCCCCCCCcccCCCCCCCCCccccHHHHHHHHHHHHHHHHhCCCC
Q 001692 890 LFKQQLAAYVEKIYGIIRDNLKKELSSLLS-LCIQAPRTSKGSVLRSGRSFGKDSASSHWQSIIDSLNTLLSTLKQNFVP 968 (1027)
Q Consensus 890 ~f~q~L~~~~~~iy~~l~~~~~k~L~~~l~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~L~~~~~~l~~~~v~ 968 (1027)
.|..........|-+.+++.++..+.+-.. ..=........... .+++++....+..|...+..|+.. ++
T Consensus 306 ~y~~l~~~~~~~iv~~v~~~~k~~lk~Y~k~~~W~~~~~~~~~~~--------~~~S~el~~~L~~L~~~L~~L~~~-L~ 376 (494)
T PF04437_consen 306 AYEKLRKRMLESIVDRVVKEFKASLKAYFKRSQWSSIESPSDSSP--------LSPSPELVPALSLLRSRLSFLERS-LP 376 (494)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHTHHHHT--GGGT---------------------GGGHHHHHHHHHHHHHHHTS---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccCCCCccccccccc--------CCCCHHHHHHHHHHHHHHHHHHHH-cC
Q ss_pred HHHHHHHHHHHHHhhhHHHhHhhhhcCCCCCCchhhHHhhchhHH
Q 001692 969 PVLVQKIFTQTFSYINVQLFNSLLLRRECCTFSNGEYVKAGLAEL 1013 (1027)
Q Consensus 969 ~~l~~Q~f~Qlf~~in~~lfN~Ll~r~~~cs~s~g~qIr~nls~L 1013 (1027)
+.....+...+..-|+-.+++.++++. -.|..-|.|+.+=+..|
T Consensus 377 ~~~f~~i~r~ia~~l~~~l~~~Il~~n-~Fs~~Ga~Ql~~D~~~L 420 (494)
T PF04437_consen 377 PADFRRIWRRIASKLDDYLWESILMSN-KFSRAGAAQLQFDMRAL 420 (494)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTTTS--B-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcC-eeChhHHHHHHHHHHHH
No 479
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=49.00 E-value=2e+02 Score=25.80 Aligned_cols=77 Identities=19% Similarity=0.299 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001692 610 VVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEER-LKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1027)
Q Consensus 610 ~~~~L~~e~~kLe~~l~~l~~~l~elek~~~ele~~~~~~-~~~l~~~~~~~~~l~~~~~~Lee~l~~le~e~~~L~q 686 (1027)
.+..+...+..+...-..+...++.+..++.++....... .-.+..-..++..+...+..+.+.+.+++.....|++
T Consensus 15 ~l~~~~~~l~el~~sQ~~L~~~i~~~~~~L~~~~~~~~~~~~~~~~~y~~KL~~ikkrm~~l~~~l~~lk~R~~~L~q 92 (92)
T PF14712_consen 15 DLDRLDQQLQELRQSQEELLQQIDRLNEKLKELNEVEQINEPFDLDPYVKKLVNIKKRMSNLHERLQKLKKRADKLQQ 92 (92)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
No 480
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=48.79 E-value=5.1e+02 Score=30.47 Aligned_cols=207 Identities=14% Similarity=0.063 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001692 471 TRASILIQSHCRKYLARLHYMKLKKAAITTQCAWRGKVARRELRKLKMAARETGALQAAKNKLEKQVEELTWRLQLEKRM 550 (1027)
Q Consensus 471 ~~aa~~IQ~~~R~~~~r~~~~~~~~a~i~iQ~~~R~~~arkel~~l~~~a~~~~~L~~~k~~LE~kv~el~~rl~~e~~~ 550 (1027)
+.-+..||..-.+...-....+.-..-..+-++.-.++.+....-|+.......--++-+...++.+..+-...+.-+..
T Consensus 200 hW~V~li~~~~~~~~~~~tl~qq~~~e~~Vek~lfdY~~~~Y~~fl~~~~~~~~~e~Elk~~f~~~~~~i~~~i~~lk~~ 279 (622)
T COG5185 200 HWMVRLIIKLDMCLQPLKTLDQQDRYELMVEKLLFDYFTESYKSFLKLEDNYEPSEQELKLGFEKFVHIINTDIANLKTQ 279 (622)
T ss_pred HHHHHHHHHHHHHHhhhchHhhccHHHHHHHHHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHHHH
Q 001692 551 RVDMEE--AKTQENAKLQSALQEMQLQFKESKEKLMKEIEVAKKEAEKVPVVQEVPVIDHAVVEELTSENEKLKTLVSSL 628 (1027)
Q Consensus 551 ~~ele~--~~~~e~~~L~~~l~~le~~l~~~~~~l~~e~~~~~~~~ee~~~~~e~~~~~~~~~~~L~~e~~kLe~~l~~l 628 (1027)
+..+.+ ....+...-.+.+++-...+..-....+.-....+...++- ..+++.|..++.+-+.++..|
T Consensus 280 n~~l~e~i~ea~k~s~~i~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~~----------~g~l~kl~~eie~kEeei~~L 349 (622)
T COG5185 280 NDNLYEKIQEAMKISQKIKTLREKWRALKSDSNKYENYVNAMKQKSQEW----------PGKLEKLKSEIELKEEEIKAL 349 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhc----------chHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001692 629 EKKIDETEKKF----------EETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQ 687 (1027)
Q Consensus 629 ~~~l~elek~~----------~ele~~~~~~~~~l~~~~~~~~~l~~~~~~Lee~l~~le~e~~~L~qq 687 (1027)
+.+.+++.+++ +.+-.+++++..+|+...-+.+.|.+.+.+-+-+...-=++++.+-++
T Consensus 350 ~~~~d~L~~q~~kq~Is~e~fe~mn~Ere~L~reL~~i~~~~~~L~k~V~~~~leaq~~~~slek~~~~ 418 (622)
T COG5185 350 QSNIDELHKQLRKQGISTEQFELMNQEREKLTRELDKINIQSDKLTKSVKSRKLEAQGIFKSLEKTLRQ 418 (622)
T ss_pred HhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHH
No 481
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=48.71 E-value=4.3e+02 Score=29.53 Aligned_cols=122 Identities=16% Similarity=0.262 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 001692 519 AARETGALQAAKNKLEKQVEELTWRLQLEKRMRVDMEEAKTQENAKLQSALQEMQLQFKESKEKLMKEIEVAKKEAEKVP 598 (1027)
Q Consensus 519 ~a~~~~~L~~~k~~LE~kv~el~~rl~~e~~~~~ele~~~~~e~~~L~~~l~~le~~l~~~~~~l~~e~~~~~~~~ee~~ 598 (1027)
+..=.......+..++..+..+...|. ....++...+.+.+.++.+...++...
T Consensus 174 a~evL~~fl~~~~~~~~~ilq~d~~L~-----------~~ek~~~~~~~k~e~~e~e~~~l~e~~--------------- 227 (297)
T PF02841_consen 174 AEEVLQEFLQSKESMENSILQADQQLT-----------EKEKEIEEEQAKAEAAEKEKEKLEEKQ--------------- 227 (297)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHH-TTS------------HHHHHHHHHHHHHHHHHHHHHHHHHHH---------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHH---------------
Q ss_pred cccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHh
Q 001692 599 VVQEVPVIDHAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKI--VQLKTAMHRLEEKVSD 676 (1027)
Q Consensus 599 ~~~e~~~~~~~~~~~L~~e~~kLe~~l~~l~~~l~elek~~~ele~~~~~~~~~l~~~~~~~--~~l~~~~~~Lee~l~~ 676 (1027)
......+..+...++..+..|..++++.++ .+..+.+.....-...+.++ ...+.+...|+.+|..
T Consensus 228 ---------~~~~~~le~~~~~~ee~~~~L~ekme~e~~---~~~~e~e~~l~~k~~eq~~~l~e~~~~~~~~l~~ei~~ 295 (297)
T PF02841_consen 228 ---------KEQEQMLEQQERSYEEHIKQLKEKMEEERE---QLLQEQERLLEQKLQEQEELLKEGFQEEAEKLQKEIQD 295 (297)
T ss_dssp ---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HH
Q 001692 677 ME 678 (1027)
Q Consensus 677 le 678 (1027)
|+
T Consensus 296 L~ 297 (297)
T PF02841_consen 296 LQ 297 (297)
T ss_dssp HH
T ss_pred cC
No 482
>PHA02414 hypothetical protein
Probab=48.63 E-value=1.7e+02 Score=26.48 Aligned_cols=67 Identities=30% Similarity=0.321 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 001692 616 SENEKLKTLVSSLEKKID-----------ETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQ 682 (1027)
Q Consensus 616 ~e~~kLe~~l~~l~~~l~-----------elek~~~ele~~~~~~~~~l~~~~~~~~~l~~~~~~Lee~l~~le~e~~ 682 (1027)
.++..|-.+++.++.++. +++....+|+.-.-.+.+++.--.++-..+-=++.+|++.++.|.+-++
T Consensus 4 ~~in~Lv~~v~~ledKiQ~Gelt~kgdn~eL~~av~ELRdivvslDKd~Av~sEKqshi~yQi~~Lee~i~aL~~~n~ 81 (111)
T PHA02414 4 KEINNLVSQVETLEDKIQEGELTDKGDNKELEVAVAELRDIVVSLDKDVAVNSEKQSHIYYQIERLEEKISALAESNK 81 (111)
T ss_pred hHHHHHHHHHHHHHHHHhcCccccCCchHHHHHHHHHHHHHHHHhhhHhhhhHHHhhHHHHHHHHHHHHHHHHHhccc
No 483
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=48.01 E-value=1.8e+02 Score=25.04 Aligned_cols=60 Identities=18% Similarity=0.309 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 001692 618 NEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDM 677 (1027)
Q Consensus 618 ~~kLe~~l~~l~~~l~elek~~~ele~~~~~~~~~l~~~~~~~~~l~~~~~~Lee~l~~l 677 (1027)
...++..-.+..+...+-+....++.........+...+..++..|...+..|.+++.+|
T Consensus 9 l~ale~Lq~~y~~q~~~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~ql~rL 68 (70)
T PF04899_consen 9 LSALEELQQSYEKQQQEWQSSYADLQHMFEQTSQENAALSEQVNNLSQQVQRLSEQLERL 68 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 484
>COG5570 Uncharacterized small protein [Function unknown]
Probab=47.97 E-value=35 Score=27.11 Aligned_cols=54 Identities=22% Similarity=0.362 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 001692 627 SLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETE 680 (1027)
Q Consensus 627 ~l~~~l~elek~~~ele~~~~~~~~~l~~~~~~~~~l~~~~~~Lee~l~~le~e 680 (1027)
..+..+.+++++-..++++..+....--.-...+.+|...+-.|+++|++|+..
T Consensus 2 aieshl~eL~kkHg~le~ei~ea~n~Ps~dd~~i~eLKRrKL~lKeeIEkLka~ 55 (57)
T COG5570 2 AIESHLAELEKKHGNLEREIQEAMNSPSSDDLAIRELKRRKLRLKEEIEKLKAQ 55 (57)
T ss_pred cHHHHHHHHHHhhchHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHhcc
No 485
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=47.62 E-value=1.3e+02 Score=30.30 Aligned_cols=65 Identities=20% Similarity=0.294 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH----HHHHHHHhHHHH
Q 001692 616 SENEKLKTLVSSLEKKIDETEKKFEETSKISEERLK---QALEAESKIVQLKTAMH----RLEEKVSDMETE 680 (1027)
Q Consensus 616 ~e~~kLe~~l~~l~~~l~elek~~~ele~~~~~~~~---~l~~~~~~~~~l~~~~~----~Lee~l~~le~e 680 (1027)
+.+...+..++.....+..++.++.+..+.+..+.. ..++++.++..|+.... ..+.++..+...
T Consensus 13 k~i~~~K~~~~~~~~e~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~~~~~~~e~~l~~~~~~ 84 (155)
T PF06810_consen 13 KDIEAPKAKVDKVKEERDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNKTAKEEYEAKLAQMKKD 84 (155)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 486
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=47.36 E-value=4.2e+02 Score=29.01 Aligned_cols=178 Identities=15% Similarity=0.199 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001692 509 ARRELRKLKMAARETGALQAAKNKLEKQVEELTWRLQLEKRMRVDMEEAKT---QENAKLQSALQEMQLQFKESKEKLMK 585 (1027)
Q Consensus 509 arkel~~l~~~a~~~~~L~~~k~~LE~kv~el~~rl~~e~~~~~ele~~~~---~e~~~L~~~l~~le~~l~~~~~~l~~ 585 (1027)
.+............+..+......|+..+..|..+.....+.-..+...-. .....|...+..+...+.++..++..
T Consensus 33 L~~~~~~~~~~~~~~~~~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~~~i~~l~~~~~~ 112 (264)
T PF06008_consen 33 LRSYRSKLNPQKQQLDPLEKELESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQDNIQELIEQVES 112 (264)
T ss_pred HHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred ---------------HHHHHHHHhhcc--ccccccchhhHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHH
Q 001692 586 ---------------EIEVAKKEAEKV--PVVQEVPVIDHAVVEELTSENEKLKTLV-----------SSLEKKIDETEK 637 (1027)
Q Consensus 586 ---------------e~~~~~~~~ee~--~~~~e~~~~~~~~~~~L~~e~~kLe~~l-----------~~l~~~l~elek 637 (1027)
.++..+..++++ ..........+.+..+...-+...+..+ ..+...+.+...
T Consensus 113 l~~~~~~~~~~~l~~~l~ea~~mL~emr~r~f~~~~~~Ae~El~~A~~LL~~v~~~~~~~~~~~~~l~~~i~~~L~~~~~ 192 (264)
T PF06008_consen 113 LNENGDQLPSEDLQRALAEAQRMLEEMRKRDFTPQRQNAEDELKEAEDLLSRVQKWFQKPQQENESLAEAIRDDLNDYNA 192 (264)
T ss_pred hCcccCCCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001692 638 KFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1027)
Q Consensus 638 ~~~ele~~~~~~~~~l~~~~~~~~~l~~~~~~Lee~l~~le~e~~~L~q 686 (1027)
++.+++....+......++......-+..+.+++.+...++++......
T Consensus 193 kL~Dl~~~l~eA~~~~~ea~~ln~~n~~~l~~~~~k~~~l~~~~~~~~~ 241 (264)
T PF06008_consen 193 KLQDLRDLLNEAQNKTREAEDLNRANQKNLEDLEKKKQELSEQQNEVSE 241 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 487
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=47.29 E-value=5.2e+02 Score=30.11 Aligned_cols=143 Identities=17% Similarity=0.188 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q 001692 528 AAKNKLEKQVEELTWRLQLEKRMRVDMEEA----------------KTQENAKLQSALQEM-QLQFKESKEKLMKEIEVA 590 (1027)
Q Consensus 528 ~~k~~LE~kv~el~~rl~~e~~~~~ele~~----------------~~~e~~~L~~~l~~l-e~~l~~~~~~l~~e~~~~ 590 (1027)
.....||+++..|+..+. . .......|..++.-| ...++..+.++..-..+.
T Consensus 209 a~~a~LE~RL~~LE~~lG-----------~~~~~~~~l~~~~~~~~l~~~l~~L~~~lslL~~~~Ld~i~~rl~~L~~~~ 277 (388)
T PF04912_consen 209 ARAADLEKRLARLESALG-----------IDSDKMSSLDSDTSSSPLLPALNELERQLSLLDPAKLDSIERRLKSLLSEL 277 (388)
T ss_pred HHHHHHHHHHHHHHHHhC-----------CCccccccccccCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhhccccccccchhhHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001692 591 KKEAEKVPVVQEVPVIDHAVVEELTSENEKL--------------------KTLVSSLEKKIDETEKKFEETSKISEERL 650 (1027)
Q Consensus 591 ~~~~ee~~~~~e~~~~~~~~~~~L~~e~~kL--------------------e~~l~~l~~~l~elek~~~ele~~~~~~~ 650 (1027)
....+.-....+... .+.++.+|-..+.++ -.+..+.-..+..++....++........
T Consensus 278 ~~l~~~~~~~~~~~~-~e~KI~eLy~~l~~~~~~~~~lP~lv~RL~tL~~lH~~a~~~~~~l~~le~~q~~l~~~l~~~~ 356 (388)
T PF04912_consen 278 EELAEKRKEAKEDAE-QESKIDELYEILPRWDPYAPSLPSLVERLKTLKSLHEEAAEFSQTLSELESQQSDLQSQLKKWE 356 (388)
T ss_pred HHHHhcccccccccc-chhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 001692 651 KQALEAESKIVQLKTAMHRLEEKVSDMETENQILR 685 (1027)
Q Consensus 651 ~~l~~~~~~~~~l~~~~~~Lee~l~~le~e~~~L~ 685 (1027)
.-|...+.+ +.+++..++..++.|++.+..|+
T Consensus 357 ~~L~~ve~~---~~~N~~~i~~n~~~le~Ri~~L~ 388 (388)
T PF04912_consen 357 ELLNKVEEK---FKENMETIEKNVKKLEERIAKLQ 388 (388)
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHHhccC
No 488
>PF04576 Zein-binding: Zein-binding; InterPro: IPR007656 This is a family of uncharacterised proteins.
Probab=47.07 E-value=2.3e+02 Score=25.90 Aligned_cols=93 Identities=19% Similarity=0.192 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001692 562 NAKLQSALQEMQLQFKESKEKLMKEIEVAKKEAEKVPVVQEVPVIDHAVVEELTSENEKLKTLVSSLEKKIDETEKKFEE 641 (1027)
Q Consensus 562 ~~~L~~~l~~le~~l~~~~~~l~~e~~~~~~~~ee~~~~~e~~~~~~~~~~~L~~e~~kLe~~l~~l~~~l~elek~~~e 641 (1027)
+..|+..+..-...+..+-.++.+|..+....-.+. -..+..|+.+|..++-+-...+.
T Consensus 1 v~~Lr~~v~~er~~~~~L~~ELEeER~AaAsAA~EA----------MaMI~RLQ~EKAa~~mEA~Qy~R----------- 59 (94)
T PF04576_consen 1 VERLRRAVEAERKALAALYAELEEERSAAASAASEA----------MAMILRLQEEKAAVEMEARQYQR----------- 59 (94)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHhHHHHHHHHHHHHH-----------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhc
Q 001692 642 TSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQS 688 (1027)
Q Consensus 642 le~~~~~~~~~l~~~~~~~~~l~~~~~~Lee~l~~le~e~~~L~qq~ 688 (1027)
-++++....++.+..|++-+-+.+.++..|+.+.
T Consensus 60 -------------m~EEk~~yD~e~ie~L~~~l~~rE~e~~~Le~el 93 (94)
T PF04576_consen 60 -------------MAEEKAEYDQEAIESLKDILYKREKEIQSLEAEL 93 (94)
T ss_pred -------------HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhc
No 489
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=46.93 E-value=2.4e+02 Score=26.04 Aligned_cols=76 Identities=14% Similarity=0.228 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001692 612 EELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERL-----KQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1027)
Q Consensus 612 ~~L~~e~~kLe~~l~~l~~~l~elek~~~ele~~~~~~~-----~~l~~~~~~~~~l~~~~~~Lee~l~~le~e~~~L~q 686 (1027)
+.....+......+......+..+...+.++........ ..+.....-+..+...+..++..+..++.++...+.
T Consensus 1 d~a~~~l~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~r~ 80 (123)
T PF02050_consen 1 DQAEQELAEAQQELQEAEEQLEQLQQERQEYQEQLSESQQGVSVAQLRNYQRYISALEQAIQQQQQELERLEQEVEQARE 80 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----SGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred h
Q 001692 687 Q 687 (1027)
Q Consensus 687 q 687 (1027)
.
T Consensus 81 ~ 81 (123)
T PF02050_consen 81 E 81 (123)
T ss_dssp H
T ss_pred H
No 490
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=46.91 E-value=1.3e+02 Score=25.83 Aligned_cols=50 Identities=16% Similarity=0.331 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001692 619 EKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMH 668 (1027)
Q Consensus 619 ~kLe~~l~~l~~~l~elek~~~ele~~~~~~~~~l~~~~~~~~~l~~~~~ 668 (1027)
..+++.+...+.++++.++....++......+.+++...+++..+++...
T Consensus 2 ~~i~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n~k 51 (71)
T PF10779_consen 2 QDIKEKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKIKSNTK 51 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 491
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=46.87 E-value=2.7e+02 Score=29.53 Aligned_cols=94 Identities=18% Similarity=0.106 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001692 556 EAKTQENAKLQSALQEMQLQFKESKEKLMKEIEVAKKEAEKVPVVQEVPVIDHAVVEELTSENEKLKTLVSSLEKKIDET 635 (1027)
Q Consensus 556 ~~~~~e~~~L~~~l~~le~~l~~~~~~l~~e~~~~~~~~ee~~~~~e~~~~~~~~~~~L~~e~~kLe~~l~~l~~~l~el 635 (1027)
.+|++-...|.-+-+....+++.--+. +...+..+...+++ +..+..|..++.+|..+.+.|+...+.+
T Consensus 55 ~rKr~RL~HLS~EEK~~RrKLKNRVAA-QtaRDrKKaRm~em----------e~~i~dL~een~~L~~en~~Lr~~n~~L 123 (292)
T KOG4005|consen 55 KRKRRRLDHLSWEEKVQRRKLKNRVAA-QTARDRKKARMEEM----------EYEIKDLTEENEILQNENDSLRAINESL 123 (292)
T ss_pred HHHHHhhcccCHHHHHHHHHHHHHHHH-hhhhhHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001692 636 EKKFEETSKISEERLKQALEAESKI 660 (1027)
Q Consensus 636 ek~~~ele~~~~~~~~~l~~~~~~~ 660 (1027)
-.+..++..+.+.+..+|.+...++
T Consensus 124 ~~~n~el~~~le~~~~~l~~~~~~~ 148 (292)
T KOG4005|consen 124 LAKNHELDSELELLRQELAELKQQQ 148 (292)
T ss_pred HhhhHHHHHHHHHHHHHHHhhHHHH
No 492
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=46.53 E-value=4.7e+02 Score=29.39 Aligned_cols=144 Identities=10% Similarity=0.085 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001692 515 KLKMAARETGALQAAKNKLEKQVEELTWRLQLEKRMRVDMEEAKTQENAKLQSALQEMQLQFKESKEKLMKEIEVAKKEA 594 (1027)
Q Consensus 515 ~l~~~a~~~~~L~~~k~~LE~kv~el~~rl~~e~~~~~ele~~~~~e~~~L~~~l~~le~~l~~~~~~l~~e~~~~~~~~ 594 (1027)
.+..+.......+.....++..+...+.... ........++.++..++.++...+..+ ...++..
T Consensus 56 ~~~~a~a~l~~a~a~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~l----~~a~~~~ 120 (327)
T TIGR02971 56 ELDVARTQLDEAKARLAQVRAGAKKGEIAAQ-----------RAARAAAKLFKDVAAQQATLNRLEAEL----ETAQREV 120 (327)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccHHHHHHH-----------HHHHHhhhhhhhHHHHHHHHHHHHHHH----HHHHHHH
Q ss_pred hccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHH
Q 001692 595 EKVPVVQEVPVIDHAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLK-----QALEAESKIVQLKTAMHR 669 (1027)
Q Consensus 595 ee~~~~~e~~~~~~~~~~~L~~e~~kLe~~l~~l~~~l~elek~~~ele~~~~~~~~-----~l~~~~~~~~~l~~~~~~ 669 (1027)
+....+.+........++....+...++..++.++.++. ..+.+.+........ ++...+.++..++..+..
T Consensus 121 ~R~~~L~~~g~iS~~~~d~~~~~~~~a~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 197 (327)
T TIGR02971 121 DRYRSLFRDGAVSASDLDSKALKLRTAEEELEEALASRS---EQIDGARAALASLAEEVRETDVDLAQAEVKSALEAVQQ 197 (327)
T ss_pred HHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHh
Q 001692 670 LEEKVSD 676 (1027)
Q Consensus 670 Lee~l~~ 676 (1027)
.+..+..
T Consensus 198 a~~~l~~ 204 (327)
T TIGR02971 198 AEALLEL 204 (327)
T ss_pred HHHHHhc
No 493
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=46.38 E-value=3.9e+02 Score=28.36 Aligned_cols=111 Identities=13% Similarity=0.070 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001692 563 AKLQSALQEMQLQFKESKEKLMKEIEVAKKEAEKVPVVQEVPVIDHAVVEELTSENEKLKTLVSSLEKKIDETEKKFEET 642 (1027)
Q Consensus 563 ~~L~~~l~~le~~l~~~~~~l~~e~~~~~~~~ee~~~~~e~~~~~~~~~~~L~~e~~kLe~~l~~l~~~l~elek~~~el 642 (1027)
....+++......++..-.....+.-....+. ..+++.-..+...|++.+.+.+.++.+.-+-..+-
T Consensus 18 d~~~~~i~n~~s~~D~f~q~~r~~~~nS~~ef-------------ar~lS~~~~e~e~l~~~l~etene~~~~neL~~ek 84 (246)
T KOG4657|consen 18 DICEKDIHNQRSKIDSFIQSPRRRSMNSLVEF-------------ARALSQSQVELENLKADLRETENELVKVNELKTEK 84 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001692 643 SKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1027)
Q Consensus 643 e~~~~~~~~~l~~~~~~~~~l~~~~~~Lee~l~~le~e~~~L~q 686 (1027)
+......+.++...+.+++.+...++.++++...+.+=+..-++
T Consensus 85 ~~~q~~ieqeik~~q~elEvl~~n~Q~lkeE~dd~keiIs~kr~ 128 (246)
T KOG4657|consen 85 EARQMGIEQEIKATQSELEVLRRNLQLLKEEKDDSKEIISQKRQ 128 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
No 494
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=46.31 E-value=7.3e+02 Score=31.51 Aligned_cols=178 Identities=16% Similarity=0.190 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Q 001692 505 RGKVARRELRKLKMAARETGALQAAKNKLEKQVEELTWRLQLEKRMRVDMEEAKTQENAKLQSA---LQEMQLQFKESKE 581 (1027)
Q Consensus 505 R~~~arkel~~l~~~a~~~~~L~~~k~~LE~kv~el~~rl~~e~~~~~ele~~~~~e~~~L~~~---l~~le~~l~~~~~ 581 (1027)
.+.++|+.+-..+.+.-+..+.+....+...+-.+.++.-..|+.+..+-......+..--+.+ .++++..+..+..
T Consensus 564 krilaRk~liE~rKe~~E~~~~~re~Eea~~q~~e~~~~r~aE~kRl~ee~~Ere~~R~l~E~e~i~~k~~ke~~~~~~~ 643 (988)
T KOG2072|consen 564 KRILARKSLIEKRKEDLEKQNVEREAEEAQEQAKEQRQAREAEEKRLIEEKKEREAKRILREKEAIRKKELKERLEQLKQ 643 (988)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001692 582 KLMKEIEVAKKEAEKVPVVQEVPVIDHAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIV 661 (1027)
Q Consensus 582 ~l~~e~~~~~~~~ee~~~~~e~~~~~~~~~~~L~~e~~kLe~~l~~l~~~l~elek~~~ele~~~~~~~~~l~~~~~~~~ 661 (1027)
.-....--.....+++..+. ..+.....++++.++++.++..+...+++++-++.....-+-=.-+..-+-...+..--
T Consensus 644 te~~aK~~k~~d~ed~e~lD-~d~i~~~q~eel~Ke~kElq~rL~~q~KkiDh~ERA~R~EeiPL~e~~~~~~~~~d~e~ 722 (988)
T KOG2072|consen 644 TEVGAKGGKEKDLEDLEKLD-ADQIKARQIEELEKERKELQSRLQYQEKKIDHLERAKRLEEIPLIEKAYDERQEEDREL 722 (988)
T ss_pred HHHHHhccccCChHHhhhcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhHHHHHHHHHhhhHHH
Q ss_pred HHHHHHHHHHHHHHhHHHHHHH
Q 001692 662 QLKTAMHRLEEKVSDMETENQI 683 (1027)
Q Consensus 662 ~l~~~~~~Lee~l~~le~e~~~ 683 (1027)
--..+.+..+..+..-+..+..
T Consensus 723 ~e~~Ek~Ri~~~~ae~e~~vk~ 744 (988)
T KOG2072|consen 723 YEAREKQRIEAAIAERESAVKD 744 (988)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
No 495
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=46.19 E-value=2.9e+02 Score=33.84 Aligned_cols=101 Identities=20% Similarity=0.336 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhhcc--ccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001692 560 QENAKLQSALQEMQLQFKESKEKL--MKEIEVAKKEAEKV--PVVQEVPVIDHAVVEELTSENEKLKTLVSSLEKKIDET 635 (1027)
Q Consensus 560 ~e~~~L~~~l~~le~~l~~~~~~l--~~e~~~~~~~~ee~--~~~~e~~~~~~~~~~~L~~e~~kLe~~l~~l~~~l~el 635 (1027)
.+.++++..+++.+..+.+...++ ..+.+..++..+++ ..++ .-..+....++.++|+.+.......+..+
T Consensus 164 ~~~~~~~~~~k~~~~~w~~~~~~Lp~~~~~~~yk~~v~~i~~~~ik-----~p~~i~~~~~e~d~lk~e~~~~~~~i~~~ 238 (555)
T TIGR03545 164 ETAEEIEKSLKAMQQKWKKRKKDLPNKQDLEEYKKRLEAIKKKDIK-----NPLELQKIKEEFDKLKKEGKADKQKIKSA 238 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHhccCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Q 001692 636 EKKFEETSKISEERLKQALEA-ESKIVQLKT 665 (1027)
Q Consensus 636 ek~~~ele~~~~~~~~~l~~~-~~~~~~l~~ 665 (1027)
...+....+.......+++.+ +..+++|..
T Consensus 239 ~~~l~~~~~~~~~~~~~lk~ap~~D~~~L~~ 269 (555)
T TIGR03545 239 KNDLQNDKKQLKADLAELKKAPQNDLKRLEN 269 (555)
T ss_pred HHHHHHhHHHHHHHHHHHHhccHhHHHHHHH
No 496
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=46.10 E-value=3.9e+02 Score=28.37 Aligned_cols=123 Identities=13% Similarity=0.144 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHH
Q 001692 533 LEKQVEELTWRLQLEKRMRVDMEEAKTQENAKLQSALQEMQLQFKESKEKLMKEIEVAKKEAEKVPVVQEVPVIDHAVVE 612 (1027)
Q Consensus 533 LE~kv~el~~rl~~e~~~~~ele~~~~~e~~~L~~~l~~le~~l~~~~~~l~~e~~~~~~~~ee~~~~~e~~~~~~~~~~ 612 (1027)
|+.-+.+++..+. ............-..++.+++.......+-.......++.= .++-..
T Consensus 29 l~q~irem~~~l~-----------~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~G---------~EdLAr 88 (219)
T TIGR02977 29 IRLIIQEMEDTLV-----------EVRTTSARTIADKKELERRVSRLEAQVADWQEKAELALSKG---------REDLAR 88 (219)
T ss_pred HHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---------CHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001692 613 ELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVS 675 (1027)
Q Consensus 613 ~L~~e~~kLe~~l~~l~~~l~elek~~~ele~~~~~~~~~l~~~~~~~~~l~~~~~~Lee~l~ 675 (1027)
..-.++...+..+..++..+..++....+++....+++.++.+++.+-..|.......+....
T Consensus 89 ~Al~~k~~~~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~A~a~~~ 151 (219)
T TIGR02977 89 AALIEKQKAQELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQAASSRLD 151 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 497
>PRK11546 zraP zinc resistance protein; Provisional
Probab=45.93 E-value=1.3e+02 Score=29.63 Aligned_cols=74 Identities=11% Similarity=0.169 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhc
Q 001692 615 TSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQQS 688 (1027)
Q Consensus 615 ~~e~~kLe~~l~~l~~~l~elek~~~ele~~~~~~~~~l~~~~~~~~~l~~~~~~Lee~l~~le~e~~~L~qq~ 688 (1027)
.++-++++.-.++...+..++++++-..+.++..+...-.--++++..+.+++.+|+.++..++.+....-.+.
T Consensus 46 ~EQQa~~q~I~~~f~~~t~~LRqqL~aKr~ELnALl~~~~pD~~kI~aL~kEI~~Lr~kL~e~r~~~~~~~~k~ 119 (143)
T PRK11546 46 TEQQAAWQKIHNDFYAQTSALRQQLVSKRYEYNALLTANPPDSSKINAVAKEMENLRQSLDELRVKRDIAMAEA 119 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
No 498
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=45.26 E-value=2.8e+02 Score=30.46 Aligned_cols=75 Identities=19% Similarity=0.253 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001692 607 DHAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEERLKQALEAESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1027)
Q Consensus 607 ~~~~~~~L~~e~~kLe~~l~~l~~~l~elek~~~ele~~~~~~~~~l~~~~~~~~~l~~~~~~Lee~l~~le~e~~~L~q 686 (1027)
+....+.+..--.+-+..-+....++.+.+..+.+.+++....-..++. ..+++...|+++.+.|++|...+++
T Consensus 325 eaKr~e~~~e~qrkEee~rqmFvqrvkekE~elke~Ekel~~kf~~lkr------~h~eEk~kle~~rr~Leee~~~f~~ 398 (406)
T KOG3859|consen 325 EAKRNEFLGELQRKEEEMRQMFVQRVKEKEAELKEAEKELHEKFDRLKR------LHQEEKKKLEEKRKQLEEEVNAFQR 398 (406)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred h
Q 001692 687 Q 687 (1027)
Q Consensus 687 q 687 (1027)
+
T Consensus 399 r 399 (406)
T KOG3859|consen 399 R 399 (406)
T ss_pred H
No 499
>KOG3564 consensus GTPase-activating protein [General function prediction only]
Probab=45.20 E-value=2e+02 Score=33.81 Aligned_cols=96 Identities=17% Similarity=0.199 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001692 570 QEMQLQFKESKEKLMKEIEVAKKEAEKVPVVQEVPVIDHAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEER 649 (1027)
Q Consensus 570 ~~le~~l~~~~~~l~~e~~~~~~~~ee~~~~~e~~~~~~~~~~~L~~e~~kLe~~l~~l~~~l~elek~~~ele~~~~~~ 649 (1027)
+.+...++.+..-...|.....+..++- +++...+..+..+.+..|...+.+...++-++....+..+..
T Consensus 13 ~~l~r~~~~l~~g~e~ef~rl~k~fed~----------~ek~~r~~ae~~~~~~~L~Ka~tk~~~ldvklkha~~~vda~ 82 (604)
T KOG3564|consen 13 EQLVRDIEILGEGNEDEFIRLRKDFEDF----------EEKWKRTDAELGKYKDLLAKAETKRSALDVKLKHARNQVDAE 82 (604)
T ss_pred HHHHHHHHHhcCccHHHHHHHHHHHHHH----------HHHHhhhhHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001692 650 LKQALEAESKIVQLKTAMHRLEEKVS 675 (1027)
Q Consensus 650 ~~~l~~~~~~~~~l~~~~~~Lee~l~ 675 (1027)
.++-+.++..++.++..++.+.+-+.
T Consensus 83 ik~rr~ae~d~~~~E~~i~~i~d~l~ 108 (604)
T KOG3564|consen 83 IKRRRRAEADCEKLETQIQLIKDMLK 108 (604)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHh
No 500
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=44.76 E-value=3.7e+02 Score=27.73 Aligned_cols=107 Identities=17% Similarity=0.196 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001692 570 QEMQLQFKESKEKLMKEIEVAKKEAEKVPVVQEVPVIDHAVVEELTSENEKLKTLVSSLEKKIDETEKKFEETSKISEER 649 (1027)
Q Consensus 570 ~~le~~l~~~~~~l~~e~~~~~~~~ee~~~~~e~~~~~~~~~~~L~~e~~kLe~~l~~l~~~l~elek~~~ele~~~~~~ 649 (1027)
+++-..+...+.+...-+-..-....++ ..+++..-.|+..|++....+++...++....--|.....+-
T Consensus 19 eel~~rLR~~E~ek~~~m~~~g~lm~ev----------NrrlQ~hl~EIR~LKe~NqkLqedNqELRdLCCFLDddRqKg 88 (195)
T PF10226_consen 19 EELVRRLRRAEAEKMSLMVEHGRLMKEV----------NRRLQQHLNEIRGLKEVNQKLQEDNQELRDLCCFLDDDRQKG 88 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhHHHh
Q ss_pred HHHHHH-----------HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001692 650 LKQALE-----------AESKIVQLKTAMHRLEEKVSDMETENQILRQ 686 (1027)
Q Consensus 650 ~~~l~~-----------~~~~~~~l~~~~~~Lee~l~~le~e~~~L~q 686 (1027)
.+-..+ ++..+...+..+.+|+.+...|-.||..|+.
T Consensus 89 rklarEWQrFGryta~vmr~eV~~Y~~KL~eLE~kq~~L~rEN~eLKE 136 (195)
T PF10226_consen 89 RKLAREWQRFGRYTASVMRQEVAQYQQKLKELEDKQEELIRENLELKE 136 (195)
T ss_pred HHHhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Done!