BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001693
(1027 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1T5C|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinetochore
Protein Cenp-E
pdb|1T5C|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinetochore
Protein Cenp-E
Length = 349
Score = 257 bits (656), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 152/351 (43%), Positives = 210/351 (59%), Gaps = 30/351 (8%)
Query: 22 IFVSVRLRPLNEKEIARNDVSDWECINDSTIIYRNNLSVAERSMYPTSYTFDRVFSCDCT 81
+ V VR+RPLN +E + + + D+ +IY+ + S S+ FDRVF + T
Sbjct: 6 VAVCVRVRPLNSREESLGETAQVYWKTDNNVIYQVDGS--------KSFNFDRVFHGNET 57
Query: 82 TRKVYEEGAKEVALAVVSGINSSVFAYGQTSSGKTYTM------IGITEYTMSDIYDYIE 135
T+ VYEE A + + + G N ++FAYGQT+SGKTYTM +G+ + DI+ I+
Sbjct: 58 TKNVYEEIAAPIIDSAIQGYNGTIFAYGQTASGKTYTMMGSEDHLGVIPRAIHDIFQKIK 117
Query: 136 KHKEREFVLKFSAMEIYNESVRDLLSA--DTSPLRLLDDPERGTIVEKLTEETLKDWNHL 193
K +REF+L+ S MEIYNE++ DLL PL + +D R V LTEE +
Sbjct: 118 KFPDREFLLRVSYMEIYNETITDLLCGTQKMKPLIIREDVNRNVYVADLTEEVVYTSEMA 177
Query: 194 KELLSTCEAQRQIGETSLNETSSRSHQILRLTVES------SACEFIGNDPSSLTATVNF 247
+ ++ E R GET +N+ SSRSH I R+ +ES S CE S + +N
Sbjct: 178 LKWITKGEKSRHYGETKMNQRSSRSHTIFRMILESREKGEPSNCE-----GSVKVSHLNL 232
Query: 248 VDLAGSERASQALSAGTRLKEGCHINRSLLTLGTVIRKLSKGR-NGHVPFRDSKLTRILQ 306
VDLAGSERA+Q +AG RLKEGC+INRSL LG VI+KLS G+ G + +RDSKLTRILQ
Sbjct: 233 VDLAGSERAAQTGAAGVRLKEGCNINRSLFILGQVIKKLSDGQVGGFINYRDSKLTRILQ 292
Query: 307 SSLGGNARTAIICTLSPARSHVEQSRNTLLFASCAKEVTTNAQVNIVMSDK 357
+SLGGNA+T IICT++P +++ L FAS AK + VN V +D+
Sbjct: 293 NSLGGNAKTRIICTITPV--SFDETLTALQFASTAKYMKNTPYVNEVSTDE 341
>pdb|3B6U|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3b In Complex With Adp
pdb|3B6U|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3b In Complex With Adp
Length = 372
Score = 221 bits (564), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 132/360 (36%), Positives = 204/360 (56%), Gaps = 17/360 (4%)
Query: 17 GCPERIFVSVRLRPLNEKEIA--RNDVSDWECINDSTIIYRNNLSVAERSMYPTSYTFDR 74
G E + V VR RP+N KE A + V D + + + +N A P ++TFD
Sbjct: 18 GSSESVRVVVRCRPMNGKEKAASYDKVVDVD-VKLGQVSVKNPKGTAHE--MPKTFTFDA 74
Query: 75 VFSCDCTTRKVYEEGAKEVALAVVSGINSSVFAYGQTSSGKTYTMIGI---------TEY 125
V+ + ++Y+E + + +V+ G N ++FAYGQT +GKTYTM GI
Sbjct: 75 VYDWNAKQFELYDETFRPLVDSVLQGFNGTIFAYGQTGTGKTYTMEGIRGDPEKRGVIPN 134
Query: 126 TMSDIYDYIEKHKEREFVLKFSAMEIYNESVRDLLSAD-TSPLRLLDDPERGTIVEKLTE 184
+ I+ +I + + ++++++ S +EIY E +RDLLS D T L L + P+ G V+ L+
Sbjct: 135 SFDHIFTHISRSQNQQYLVRASYLEIYQEEIRDLLSKDQTKRLELKERPDTGVYVKDLSS 194
Query: 185 ETLKDWNHLKELLSTCEAQRQIGETSLNETSSRSHQILRLTVESSACEFIGNDPSSLTAT 244
K ++ +++ R +G T++NE SSRSH I +T+E S G + +
Sbjct: 195 FVTKSVKEIEHVMNVGNQNRSVGATNMNEHSSRSHAIFVITIECSEVGLDGENHIRV-GK 253
Query: 245 VNFVDLAGSERASQALSAGTRLKEGCHINRSLLTLGTVIRKLSKGRNGHVPFRDSKLTRI 304
+N VDLAGSER ++ + G RLKE IN SL LG VI L G++ H+P+RDSKLTR+
Sbjct: 254 LNLVDLAGSERQAKTGAQGERLKEATKINLSLSALGNVISALVDGKSTHIPYRDSKLTRL 313
Query: 305 LQSSLGGNARTAIICTLSPARSHVEQSRNTLLFASCAKEVTTNAQVNIVMSDKALVKHLQ 364
LQ SLGGNA+T ++ + PA +VE++ TL +A+ AK + +VN D AL++ Q
Sbjct: 314 LQDSLGGNAKTVMVANVGPASYNVEETLTTLRYANRAKNIKNKPRVNEDPKD-ALLREFQ 372
>pdb|2Y5W|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y5W|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y65|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|C Chain C, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|D Chain D, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
Length = 365
Score = 206 bits (523), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 130/352 (36%), Positives = 190/352 (53%), Gaps = 22/352 (6%)
Query: 10 MQAQSQSGCPERIFVSVRLRPLNEKEIARNDVSDWECINDSTIIYRNNLSVAERSMYPTS 69
M A+ + + I V R RPLN+ S+ + + + + NN+ S+
Sbjct: 1 MSAEREIPAEDSIKVVCRFRPLND--------SEEKAGSKFVVKFPNNVEENCISIAGKV 52
Query: 70 YTFDRVFSCDCTTRKVYEEGAKEVALAVVSGINSSVFAYGQTSSGKTYTM---------I 120
Y FD+VF + + KVY E AK + V++G N ++FAYGQTSSGKT+TM
Sbjct: 53 YLFDKVFKPNASQEKVYNEAAKSIVTDVLAGYNGTIFAYGQTSSGKTHTMEGVIGDSVKQ 112
Query: 121 GITEYTMSDIYDYIEKHK-EREFVLKFSAMEIYNESVRDLLSADTSPLRLLDDPERGTIV 179
GI ++DI+++I + EF +K S EIY + +RDLL L + +D R V
Sbjct: 113 GIIPRIVNDIFNHIYAMEVNLEFHIKVSYYEIYMDKIRDLLDVSKVNLSVHEDKNRVPYV 172
Query: 180 EKLTEETLKDWNHLKELLSTCEAQRQIGETSLNETSSRSHQILRLTVESSACEFIGNDPS 239
+ TE + + E++ ++ R I T++NE SSRSH + + V+ E +
Sbjct: 173 KGATERFVSSPEDVFEVIEEGKSNRHIAVTNMNEHSSRSHSVFLINVKQENLE----NQK 228
Query: 240 SLTATVNFVDLAGSERASQALSAGTRLKEGCHINRSLLTLGTVIRKLSKGRNGHVPFRDS 299
L+ + VDLAGSE+ S+ + GT L E +IN+SL LG VI L+ G H+P+RDS
Sbjct: 229 KLSGKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSALGNVISALADGNKTHIPYRDS 288
Query: 300 KLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLLFASCAKEVTTNAQVN 351
KLTRILQ SLGGNART I+ SPA + ++++TL F AK V VN
Sbjct: 289 KLTRILQESLGGNARTTIVICCSPASFNESETKSTLDFGRRAKTVKNVVCVN 340
>pdb|1MKJ|A Chain A, Human Kinesin Motor Domain With Docked Neck Linker
Length = 349
Score = 202 bits (513), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 125/344 (36%), Positives = 188/344 (54%), Gaps = 26/344 (7%)
Query: 22 IFVSVRLRPLNEKEIARNDVSDWECINDSTIIYRNNLSVAERSMYPTSYTFDRVFSCDCT 81
I V R RPLNE E+ R D + + T++ +A + Y FDRVF +
Sbjct: 9 IKVMCRFRPLNESEVNRGDKYIAKFQGEDTVV------IASKP-----YAFDRVFQSSTS 57
Query: 82 TRKVYEEGAKEVALAVVSGINSSVFAYGQTSSGKTYTM---------IGITEYTMSDIYD 132
+VY + AK++ V+ G N ++FAYGQTSSGKT+TM +GI + DI++
Sbjct: 58 QEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPEGMGIIPRIVQDIFN 117
Query: 133 YIEKHKER-EFVLKFSAMEIYNESVRDLLSADTSPLRLLDDPERGTIVEKLTEETLKDWN 191
YI E EF +K S EIY + +RDLL + L + +D R V+ TE + +
Sbjct: 118 YIYSMDENLEFHIKVSYFEIYLDKIRDLLDVSKTNLSVHEDKNRVPYVKGCTERFVCSPD 177
Query: 192 HLKELLSTCEAQRQIGETSLNETSSRSHQILRLTVESSACEFIGNDPSSLTATVNFVDLA 251
+ + + ++ R + T++NE SSRSH I + V+ + L+ + VDLA
Sbjct: 178 EVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQ----TEQKLSGKLYLVDLA 233
Query: 252 GSERASQALSAGTRLKEGCHINRSLLTLGTVIRKLSKGRNGHVPFRDSKLTRILQSSLGG 311
GSE+ S+ + G L E +IN+SL LG VI L++G +VP+RDSK+TRILQ SLGG
Sbjct: 234 GSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEGST-YVPYRDSKMTRILQDSLGG 292
Query: 312 NARTAIICTLSPARSHVEQSRNTLLFASCAKEVTTNAQVNIVMS 355
N RT I+ SP+ + ++++TLLF AK + VN+ ++
Sbjct: 293 NCRTTIVICCSPSSYNESETKSTLLFGQRAKTIKNTVCVNVELT 336
>pdb|4ATX|C Chain C, Rigor Kinesin Motor Domain With An Ordered Neck-Linker,
Docked On Tubulin Dimer, Modelled Into The 8a Cryo-Em
Map Of Doublecortin-Microtubules Decorated With Kinesin
Length = 340
Score = 200 bits (508), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 124/344 (36%), Positives = 187/344 (54%), Gaps = 26/344 (7%)
Query: 22 IFVSVRLRPLNEKEIARNDVSDWECINDSTIIYRNNLSVAERSMYPTSYTFDRVFSCDCT 81
I V R RPLNE E+ R D + + T++ +A + Y FDRVF +
Sbjct: 9 IKVMCRFRPLNESEVNRGDKYVAKFQGEDTVM------IASKP-----YAFDRVFQSSTS 57
Query: 82 TRKVYEEGAKEVALAVVSGINSSVFAYGQTSSGKTYTM---------IGITEYTMSDIYD 132
+VY + AK++ V+ G N ++FAYGQTSSGK +TM +GI + DI++
Sbjct: 58 QEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKNHTMEGKLHDPEGMGIIPRIVQDIFN 117
Query: 133 YIEKHKER-EFVLKFSAMEIYNESVRDLLSADTSPLRLLDDPERGTIVEKLTEETLKDWN 191
YI E EF +K S EIY + +RDLL + L + +D R V+ TE + +
Sbjct: 118 YIYSMDENLEFHIKVSYFEIYLDKIRDLLDVSKTNLSVHEDKNRVPYVKGCTERFVCSPD 177
Query: 192 HLKELLSTCEAQRQIGETSLNETSSRSHQILRLTVESSACEFIGNDPSSLTATVNFVDLA 251
+ + + ++ R + T++NE SSRSH I + V+ + L+ + VDLA
Sbjct: 178 EVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQ----TEQKLSGKLYLVDLA 233
Query: 252 GSERASQALSAGTRLKEGCHINRSLLTLGTVIRKLSKGRNGHVPFRDSKLTRILQSSLGG 311
GSE+ S+ + G L E +IN+SL LG VI L++G +VP+RDSK+TRILQ SLGG
Sbjct: 234 GSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEGST-YVPYRDSKMTRILQDSLGG 292
Query: 312 NARTAIICTLSPARSHVEQSRNTLLFASCAKEVTTNAQVNIVMS 355
N RT I+ SP+ + ++++TLLF AK + VN+ ++
Sbjct: 293 NCRTTIVICCSPSSYNESETKSTLLFGQRAKTIKNTVCVNVELT 336
>pdb|2VVG|A Chain A, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a
Motor Domain
pdb|2VVG|B Chain B, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a
Motor Domain
Length = 350
Score = 199 bits (506), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 127/346 (36%), Positives = 187/346 (54%), Gaps = 21/346 (6%)
Query: 20 ERIFVSVRLRPLNEKE-------IARNDVSDWECINDSTIIYRNNLSVAERSMYPTSYTF 72
+ I V VR RPLN +E I R D + + I D S + P ++TF
Sbjct: 4 DNIKVIVRCRPLNARETRENALNIIRMDEASAQVIVDPP---EQEKSATQAKKVPRTFTF 60
Query: 73 DRVFSCDCTTRKVYEEGAKEVALAVVSGINSSVFAYGQTSSGKTYTMIGITE------YT 126
D V+ +++ K + AV+ G NS++FAYGQT +GKT+TM G E +
Sbjct: 61 DAVYDQTSCNYGIFQASFKPLIDAVLEGFNSTIFAYGQTGAGKTWTMGGNKEEPGAIPNS 120
Query: 127 MSDIYDYIEKHKERE-FVLKFSAMEIYNESVRDLLSADTSPLRLLDDPERGTIVEKLTEE 185
++D I + F++ S +E+YNE +RDL+ +T L L +D RG V+ L+
Sbjct: 121 FKHLFDAINSSSSNQNFLVIGSYLELYNEEIRDLIKNNTK-LPLKEDKTRGIYVDGLSMH 179
Query: 186 TLKDWNHLKELLSTCEAQRQIGETSLNETSSRSHQILRLTVESSACEFIGNDPSSLTATV 245
+ L L+ A R + T +N+TSSRSH I + +E S E I N +
Sbjct: 180 RVTTAAELSALMDKGFANRHVAATQMNDTSSRSHSIFMVRIECS--EVIENKEVIRVGKL 237
Query: 246 NFVDLAGSERASQALSAGTRLKEGCHINRSLLTLGTVIRKLSKGRNGHVPFRDSKLTRIL 305
N VDLAGSER S+ + G L EG IN SL LG VI KL +G H+P+RDSKLTR+L
Sbjct: 238 NLVDLAGSERQSKTGATGETLVEGAKINLSLSALGLVISKLVEGAT-HIPYRDSKLTRLL 296
Query: 306 QSSLGGNARTAIICTLSPARSHVEQSRNTLLFASCAKEVTTNAQVN 351
Q SLGGN++T + +SPA ++ +++ +TL +A AK++ ++N
Sbjct: 297 QDSLGGNSKTLMCANISPASTNYDETMSTLRYADRAKQIKNKPRIN 342
>pdb|3B6V|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3c In Complex With Adp
pdb|3B6V|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3c In Complex With Adp
Length = 395
Score = 199 bits (506), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 129/370 (34%), Positives = 191/370 (51%), Gaps = 38/370 (10%)
Query: 17 GCPERIFVSVRLRPLNEKEIARNDVSDWEC-INDSTIIYRNNLSVAERSMYPTSYTFDRV 75
G E + V R RPL+ KE A + + RN A P ++TFD V
Sbjct: 18 GASEALKVVARCRPLSRKEEAAGHEQILTMDVKLGQVTLRN--PRAAPGELPKTFTFDAV 75
Query: 76 FSCDCTTRKVYEEGAKEVALAVVSGINSSVFAYGQTSSGKTYTMIG---------ITEYT 126
+ +Y+E + + +V+ G N +VFAYGQT +GKTYTM G +
Sbjct: 76 YDASSKQADLYDETVRPLIDSVLQGFNGTVFAYGQTGTGKTYTMQGTWVEPELRGVIPNA 135
Query: 127 MSDIYDYIEKHKEREFVLKFSAMEIYNESVRDLLSADTSP-LRLLDDPERGTIVEKLTEE 185
I+ +I + + ++++++ S +EIY E +RDLLS + L L ++PE G ++ L+
Sbjct: 136 FEHIFTHISRSQNQQYLVRASYLEIYQEEIRDLLSKEPGKRLELKENPETGVYIKDLSSF 195
Query: 186 TLKDWNHLKELLSTCEAQRQIGETSLNETSSRSHQILRLTVESSACEFIGNDPSSLTATV 245
K+ ++ +++ R +G T +NE SSRSH I +TVE S G D + +
Sbjct: 196 VTKNVKEIEHVMNLGNQTRAVGSTHMNEVSSRSHAIFIITVECSERGSDGQDHIRV-GKL 254
Query: 246 NFVDLAGSERASQAL--SAGT----------------------RLKEGCHINRSLLTLGT 281
N VDLAGSER ++A +AG R KE IN SL LG
Sbjct: 255 NLVDLAGSERQNKAGPNTAGGAATPSSGGGGGGGGSGGGAGGERPKEASKINLSLSALGN 314
Query: 282 VIRKLSKGRNGHVPFRDSKLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLLFASCA 341
VI L+ R+ H+P+RDSKLTR+LQ SLGGNA+T ++ TL PA ++S +TL FA+ A
Sbjct: 315 VIAALAGNRSTHIPYRDSKLTRLLQDSLGGNAKTIMVATLGPASHSYDESLSTLRFANRA 374
Query: 342 KEVTTNAQVN 351
K + +VN
Sbjct: 375 KNIKNKPRVN 384
>pdb|1BG2|A Chain A, Human Ubiquitous Kinesin Motor Domain
pdb|2P4N|K Chain K, Human Monomeric Kinesin (1bg2) And Bovine Tubulin (1jff)
Docked Into The 9-Angstrom Cryo-Em Map Of
Nucleotide-Free Kinesin Complexed To The Microtubule
Length = 325
Score = 199 bits (505), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 123/333 (36%), Positives = 183/333 (54%), Gaps = 26/333 (7%)
Query: 22 IFVSVRLRPLNEKEIARNDVSDWECINDSTIIYRNNLSVAERSMYPTSYTFDRVFSCDCT 81
I V R RPLNE E+ R D + + T++ +A + Y FDRVF +
Sbjct: 9 IKVMCRFRPLNESEVNRGDKYIAKFQGEDTVV------IASKP-----YAFDRVFQSSTS 57
Query: 82 TRKVYEEGAKEVALAVVSGINSSVFAYGQTSSGKTYTM---------IGITEYTMSDIYD 132
+VY + AK++ V+ G N ++FAYGQTSSGKT+TM +GI + DI++
Sbjct: 58 QEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPEGMGIIPRIVQDIFN 117
Query: 133 YIEKHKER-EFVLKFSAMEIYNESVRDLLSADTSPLRLLDDPERGTIVEKLTEETLKDWN 191
YI E EF +K S EIY + +RDLL + L + +D R V+ TE + +
Sbjct: 118 YIYSMDENLEFHIKVSYFEIYLDKIRDLLDVSKTNLSVHEDKNRVPYVKGCTERFVCSPD 177
Query: 192 HLKELLSTCEAQRQIGETSLNETSSRSHQILRLTVESSACEFIGNDPSSLTATVNFVDLA 251
+ + + ++ R + T++NE SSRSH I + V+ + L+ + VDLA
Sbjct: 178 EVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQ----TEQKLSGKLYLVDLA 233
Query: 252 GSERASQALSAGTRLKEGCHINRSLLTLGTVIRKLSKGRNGHVPFRDSKLTRILQSSLGG 311
GSE+ S+ + G L E +IN+SL LG VI L++G +VP+RDSK+TRILQ SLGG
Sbjct: 234 GSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEGST-YVPYRDSKMTRILQDSLGG 292
Query: 312 NARTAIICTLSPARSHVEQSRNTLLFASCAKEV 344
N RT I+ SP+ + ++++TLLF AK +
Sbjct: 293 NCRTTIVICCSPSSYNESETKSTLLFGQRAKTI 325
>pdb|4AQV|C Chain C, Model Of Human Kinesin-5 Motor Domain (3hqd) And Mammalian
Tubulin Heterodimer (1jff) Docked Into The 9.7-angstrom
Cryo-em Map Of Microtubule-bound Kinesin-5 Motor Domain
In The Ampppnp State.
pdb|4AQW|C Chain C, Model Of Human Kinesin-5 Motor Domain (1ii6, 3hqd) And
Mammalian Tubulin Heterodimer (1jff) Docked Into The
9.5- Angstrom Cryo-em Map Of Microtubule-bound Kinesin-5
Motor Domain In The Rigor State
Length = 373
Score = 194 bits (493), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 129/354 (36%), Positives = 195/354 (55%), Gaps = 30/354 (8%)
Query: 22 IFVSVRLRPLN--EKEIARNDVSDWECINDSTIIYRNNLSVAERSMYPTSYTFDRVFSCD 79
I V VR+RP N E++ + + + + + + + L A++S T YTFD VF
Sbjct: 19 IQVVVRVRPFNLAERKASAHSIVESDPVRKEVSVRTGGL--ADKSSRKT-YTFDMVFGAS 75
Query: 80 CTTRKVYEEGAKEVALAVVSGINSSVFAYGQTSSGKTYTM-----------------IGI 122
VY + V+ G N+++FAYGQT +GKT+TM GI
Sbjct: 76 TKQIDVYRSVVAPILDEVIMGYNATIFAYGQTGTGKTFTMEGERSPNEEYCWEEDPLAGI 135
Query: 123 TEYTMSDIYDYIEKHKEREFVLKFSAMEIYNESVRDLL--SADTSP-LRLLDDP--ERGT 177
T+ I++ + + EF +K S +EIYNE + DLL S+D S L++ DDP +RG
Sbjct: 136 IPRTLHQIFEKLTDNGT-EFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRGV 194
Query: 178 IVEKLTEETLKDWNHLKELLSTCEAQRQIGETSLNETSSRSHQILRLTVESSACEFIGND 237
I++ L E T+ + + + ++L A+R T +N SSRSH + +T+ G +
Sbjct: 195 IIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGEE 254
Query: 238 PSSLTATVNFVDLAGSERASQALSAGTRLKEGCHINRSLLTLGTVIRKLSKGRNGHVPFR 297
+ +N VDLAGSE ++ + R +E +IN+SLLTLG VI L + R HVP+R
Sbjct: 255 LVKI-GKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVE-RTPHVPYR 312
Query: 298 DSKLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLLFASCAKEVTTNAQVN 351
+SKLTRILQ SLGG RT+II T+SPA ++E++ +TL +A AK + +VN
Sbjct: 313 ESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNKPEVN 366
>pdb|4AP0|A Chain A, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|B Chain B, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|C Chain C, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|D Chain D, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
Length = 370
Score = 193 bits (490), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 135/371 (36%), Positives = 196/371 (52%), Gaps = 32/371 (8%)
Query: 9 PMQAQSQSGCPER------IFVSVRLRPLNEKEIARNDVSDWECINDSTIIYRNNLSVAE 62
PM +Q S ++ I V VR RP N E + S EC + +A+
Sbjct: 2 PMASQPNSSAKKKEEKGKNIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLAD 61
Query: 63 RSMYPTSYTFDRVFSCDCTTRKVYEEGAKEVALAVVSGINSSVFAYGQTSSGKTYTM--- 119
+S T YTFD VF VY + V+ G N ++FAYGQT +GKT+TM
Sbjct: 62 KSSRKT-YTFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGE 120
Query: 120 --------------IGITEYTMSDIYDYIEKHKEREFVLKFSAMEIYNESVRDLL--SAD 163
GI T+ I++ + + EF +K S +EIYNE + DLL S+D
Sbjct: 121 RSPNEEYTWEEDPLAGIIPRTLHQIFEKLTDNGT-EFSVKVSLLEIYNEELFDLLNPSSD 179
Query: 164 TSP-LRLLDDP--ERGTIVEKLTEETLKDWNHLKELLSTCEAQRQIGETSLNETSSRSHQ 220
S L++ DDP +RG I++ L E T+ + + + ++L A+R T +N SSRSH
Sbjct: 180 VSERLQMFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHS 239
Query: 221 ILRLTVESSACEFIGNDPSSLTATVNFVDLAGSERASQALSAGTRLKEGCHINRSLLTLG 280
+ +T+ G + + +N VDLAGSE ++ + R +E +IN+SLLTLG
Sbjct: 240 VFSVTIHMKETTIDGEELVKI-GKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLG 298
Query: 281 TVIRKLSKGRNGHVPFRDSKLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLLFASC 340
VI L + R HVP+R+SKLTRILQ SLGG RT+II T+SPA ++E++ +TL +A
Sbjct: 299 RVITALVE-RTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHR 357
Query: 341 AKEVTTNAQVN 351
AK + +VN
Sbjct: 358 AKNILNKPEVN 368
>pdb|3HQD|A Chain A, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And
Mg2+
pdb|3HQD|B Chain B, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And
Mg2+
pdb|3KEN|A Chain A, Human Eg5 In Complex With S-Trityl-L-Cysteine
Length = 369
Score = 191 bits (484), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 131/352 (37%), Positives = 189/352 (53%), Gaps = 26/352 (7%)
Query: 22 IFVSVRLRPLNEKEIARNDVSDWECINDSTIIYRNNLSVAERSMYPTSYTFDRVFSCDCT 81
I V VR RP N E + S EC + +A++S T YTFD VF
Sbjct: 19 IQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKT-YTFDMVFGASTK 77
Query: 82 TRKVYEEGAKEVALAVVSGINSSVFAYGQTSSGKTYTM-----------------IGITE 124
VY + V+ G N ++FAYGQT +GKT+TM GI
Sbjct: 78 QIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIP 137
Query: 125 YTMSDIYDYIEKHKEREFVLKFSAMEIYNESVRDLL--SADTSP-LRLLDDP--ERGTIV 179
T+ I++ + + EF +K S +EIYNE + DLL S+D S L++ DDP +RG I+
Sbjct: 138 RTLHQIFEKLTDNGT-EFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRGVII 196
Query: 180 EKLTEETLKDWNHLKELLSTCEAQRQIGETSLNETSSRSHQILRLTVESSACEFIGNDPS 239
+ L E T+ + + + ++L A+R T +N SSRSH + +T+ G +
Sbjct: 197 KGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGEELV 256
Query: 240 SLTATVNFVDLAGSERASQALSAGTRLKEGCHINRSLLTLGTVIRKLSKGRNGHVPFRDS 299
+ +N VDLAGSE ++ + R +E +IN+SLLTLG VI L + R HVP+R+S
Sbjct: 257 KI-GKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVE-RTPHVPYRES 314
Query: 300 KLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLLFASCAKEVTTNAQVN 351
KLTRILQ SLGG RT+II T+SPA ++E++ +TL +A AK + +VN
Sbjct: 315 KLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNKPEVN 366
>pdb|1X88|A Chain A, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol
pdb|1X88|B Chain B, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol
Length = 359
Score = 191 bits (484), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 131/352 (37%), Positives = 189/352 (53%), Gaps = 26/352 (7%)
Query: 22 IFVSVRLRPLNEKEIARNDVSDWECINDSTIIYRNNLSVAERSMYPTSYTFDRVFSCDCT 81
I V VR RP N E + S EC + +A++S T YTFD VF
Sbjct: 10 IQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKT-YTFDMVFGASTK 68
Query: 82 TRKVYEEGAKEVALAVVSGINSSVFAYGQTSSGKTYTM-----------------IGITE 124
VY + V+ G N ++FAYGQT +GKT+TM GI
Sbjct: 69 QIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIP 128
Query: 125 YTMSDIYDYIEKHKEREFVLKFSAMEIYNESVRDLL--SADTSP-LRLLDDP--ERGTIV 179
T+ I++ + + EF +K S +EIYNE + DLL S+D S L++ DDP +RG I+
Sbjct: 129 RTLHQIFEKLTDNGT-EFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRGVII 187
Query: 180 EKLTEETLKDWNHLKELLSTCEAQRQIGETSLNETSSRSHQILRLTVESSACEFIGNDPS 239
+ L E T+ + + + ++L A+R T +N SSRSH + +T+ G +
Sbjct: 188 KGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGEELV 247
Query: 240 SLTATVNFVDLAGSERASQALSAGTRLKEGCHINRSLLTLGTVIRKLSKGRNGHVPFRDS 299
+ +N VDLAGSE ++ + R +E +IN+SLLTLG VI L + R HVP+R+S
Sbjct: 248 KI-GKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVE-RTPHVPYRES 305
Query: 300 KLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLLFASCAKEVTTNAQVN 351
KLTRILQ SLGG RT+II T+SPA ++E++ +TL +A AK + +VN
Sbjct: 306 KLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNKPEVN 357
>pdb|4A1Z|A Chain A, Eg5-1
pdb|4A1Z|B Chain B, Eg5-1
Length = 368
Score = 191 bits (484), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 131/352 (37%), Positives = 189/352 (53%), Gaps = 26/352 (7%)
Query: 22 IFVSVRLRPLNEKEIARNDVSDWECINDSTIIYRNNLSVAERSMYPTSYTFDRVFSCDCT 81
I V VR RP N E + S EC + +A++S T YTFD VF
Sbjct: 19 IQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKT-YTFDMVFGASTK 77
Query: 82 TRKVYEEGAKEVALAVVSGINSSVFAYGQTSSGKTYTM-----------------IGITE 124
VY + V+ G N ++FAYGQT +GKT+TM GI
Sbjct: 78 QIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEVPLAGIIP 137
Query: 125 YTMSDIYDYIEKHKEREFVLKFSAMEIYNESVRDLL--SADTSP-LRLLDDP--ERGTIV 179
T+ I++ + + EF +K S +EIYNE + DLL S+D S L++ DDP +RG I+
Sbjct: 138 RTLHQIFEKLTDNGT-EFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRGVII 196
Query: 180 EKLTEETLKDWNHLKELLSTCEAQRQIGETSLNETSSRSHQILRLTVESSACEFIGNDPS 239
+ L E T+ + + + ++L A+R T +N SSRSH + +T+ G +
Sbjct: 197 KGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGEELV 256
Query: 240 SLTATVNFVDLAGSERASQALSAGTRLKEGCHINRSLLTLGTVIRKLSKGRNGHVPFRDS 299
+ +N VDLAGSE ++ + R +E +IN+SLLTLG VI L + R HVP+R+S
Sbjct: 257 KI-GKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVE-RTPHVPYRES 314
Query: 300 KLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLLFASCAKEVTTNAQVN 351
KLTRILQ SLGG RT+II T+SPA ++E++ +TL +A AK + +VN
Sbjct: 315 KLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNKPEVN 366
>pdb|1II6|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp.
pdb|1II6|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp.
pdb|1YRS|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|1YRS|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2FME|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 (ksp) In
Complex With Mg-adp And (r)-4-(3-hydroxyphenyl)-n,n,7,8-
Tetramethyl-3,4-dihydroisoquinoline-2(1h)-carboxamide
pdb|2FME|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 (ksp) In
Complex With Mg-adp And (r)-4-(3-hydroxyphenyl)-n,n,7,8-
Tetramethyl-3,4-dihydroisoquinoline-2(1h)-carboxamide
pdb|2GM1|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|D Chain D, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|E Chain E, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2G1Q|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 9h
pdb|2G1Q|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 9h
pdb|2PG2|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 15
pdb|2PG2|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 15
pdb|2UYI|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 33
pdb|2UYI|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 33
pdb|2UYM|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 37
pdb|2UYM|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 37
pdb|3K5E|A Chain A, The Structure Of Human Kinesin-Like Motor Protein
Kif11KSPEG5 IN COMPLEX WITH ADP AND ENASTROL.
pdb|3K5E|B Chain B, The Structure Of Human Kinesin-Like Motor Protein
Kif11KSPEG5 IN COMPLEX WITH ADP AND ENASTROL.
pdb|3K3B|A Chain A, Co-crystal Structure Of The Human Kinesin Eg5 With A Novel
Tetrahydro- Beta-carboline
pdb|3K3B|B Chain B, Co-crystal Structure Of The Human Kinesin Eg5 With A Novel
Tetrahydro- Beta-carboline
pdb|3L9H|A Chain A, X-Ray Structure Of Mitotic Kinesin-5 (Ksp, Kif11, Eg5)in
Complex With The Hexahydro-2h-Pyrano[3,2-C]quinoline Emd
534085
pdb|3L9H|B Chain B, X-Ray Structure Of Mitotic Kinesin-5 (Ksp, Kif11, Eg5)in
Complex With The Hexahydro-2h-Pyrano[3,2-C]quinoline Emd
534085
pdb|2X7C|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Enastron
pdb|2X7C|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Enastron
pdb|2X7D|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Dimethylenastron
pdb|2X7D|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Dimethylenastron
pdb|2X7E|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-Fluorastrol
pdb|2X7E|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-Fluorastrol
pdb|2WOG|A Chain A, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2WOG|B Chain B, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2WOG|C Chain C, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2X2R|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2X2R|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2X2R|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2XAE|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|2XAE|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|2XAE|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|4A50|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
2-amino-5-(3-methylphenyl)-5,5-diphenylpentanoic Acid
pdb|4A51|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|D Chain D, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|E Chain E, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|F Chain F, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|G Chain G, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A5Y|A Chain A, Eg5-Inhibitor Complex
pdb|4A5Y|B Chain B, Eg5-Inhibitor Complex
pdb|4A5Y|C Chain C, Eg5-Inhibitor Complex
Length = 368
Score = 191 bits (484), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 131/352 (37%), Positives = 189/352 (53%), Gaps = 26/352 (7%)
Query: 22 IFVSVRLRPLNEKEIARNDVSDWECINDSTIIYRNNLSVAERSMYPTSYTFDRVFSCDCT 81
I V VR RP N E + S EC + +A++S T YTFD VF
Sbjct: 19 IQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKT-YTFDMVFGASTK 77
Query: 82 TRKVYEEGAKEVALAVVSGINSSVFAYGQTSSGKTYTM-----------------IGITE 124
VY + V+ G N ++FAYGQT +GKT+TM GI
Sbjct: 78 QIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIP 137
Query: 125 YTMSDIYDYIEKHKEREFVLKFSAMEIYNESVRDLL--SADTSP-LRLLDDP--ERGTIV 179
T+ I++ + + EF +K S +EIYNE + DLL S+D S L++ DDP +RG I+
Sbjct: 138 RTLHQIFEKLTDNGT-EFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRGVII 196
Query: 180 EKLTEETLKDWNHLKELLSTCEAQRQIGETSLNETSSRSHQILRLTVESSACEFIGNDPS 239
+ L E T+ + + + ++L A+R T +N SSRSH + +T+ G +
Sbjct: 197 KGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGEELV 256
Query: 240 SLTATVNFVDLAGSERASQALSAGTRLKEGCHINRSLLTLGTVIRKLSKGRNGHVPFRDS 299
+ +N VDLAGSE ++ + R +E +IN+SLLTLG VI L + R HVP+R+S
Sbjct: 257 KI-GKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVE-RTPHVPYRES 314
Query: 300 KLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLLFASCAKEVTTNAQVN 351
KLTRILQ SLGG RT+II T+SPA ++E++ +TL +A AK + +VN
Sbjct: 315 KLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNKPEVN 366
>pdb|2WBE|C Chain C, Kinesin-5-Tubulin Complex With Amppnp
Length = 373
Score = 191 bits (484), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 130/372 (34%), Positives = 196/372 (52%), Gaps = 30/372 (8%)
Query: 1 MGAAGDEEPMQAQSQSGCPERIFVSVRLRPLNEKEIARNDVSDWECINDSTIIYRNNLSV 60
M +G Q Q +S + I V VR+RPLN +E + + ++ R+ L
Sbjct: 6 MDISGGNTSRQPQKKSN--QNIQVYVRVRPLNSRERCIRSAEVVDVVGPREVVTRHTLD- 62
Query: 61 AERSMYPTSYTFDRVFSCDCTTRKVYEEGAKEVALAVVSGINSSVFAYGQTSSGKTYTM- 119
S +TFDR F + VY + V++G N +VFAYGQT +GKT+TM
Sbjct: 63 ---SKLTKKFTFDRSFGPESKQCDVYSVVVSPLIEEVLNGYNCTVFAYGQTGTGKTHTMV 119
Query: 120 ----------------IGITEYTMSDIYDYIEKHKEREFVLKFSAMEIYNESVRDLLSAD 163
IGI +S ++D + + E E+ ++ S +E+YNE + DLLS D
Sbjct: 120 GNETAELKSSWEDDSDIGIIPRALSHLFDEL-RMMEVEYTMRISYLELYNEELCDLLSTD 178
Query: 164 -TSPLRLLDDPER--GTIVEKLTEETLKDWNHLKELLSTCEAQRQIGETSLNETSSRSHQ 220
T+ +R+ DD + I++ L E + + + +LL + +R+ T +N SSRSH
Sbjct: 179 DTTKIRIFDDSTKKGSVIIQGLEEIPVHSKDDVYKLLEKGKERRKTATTLMNAQSSRSHT 238
Query: 221 ILRLTVESSACEFIGNDPSSLTATVNFVDLAGSERASQALS-AGTRLKEGCHINRSLLTL 279
+ + V G D + +N VDLAGSE S+A + G R++E +IN+SLLTL
Sbjct: 239 VFSIVVHIRENGIEGEDMLKI-GKLNLVDLAGSENVSKAGNEKGIRVRETVNINQSLLTL 297
Query: 280 GTVIRKLSKGRNGHVPFRDSKLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLLFAS 339
G VI L R HVP+R+SKLTR+LQ SLGG +T+II T+SP +E++ +TL +A
Sbjct: 298 GRVITALVD-RAPHVPYRESKLTRLLQESLGGRTKTSIIATISPGHKDIEETLSTLEYAH 356
Query: 340 CAKEVTTNAQVN 351
AK + +VN
Sbjct: 357 RAKNIQNKPEVN 368
>pdb|1Q0B|A Chain A, Crystal Structure Of The Motor Protein Ksp In Complex With
Adp And Monastrol
pdb|1Q0B|B Chain B, Crystal Structure Of The Motor Protein Ksp In Complex With
Adp And Monastrol
pdb|2FKY|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 13
pdb|2FKY|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 13
pdb|2FL2|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 19
pdb|2FL2|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 19
pdb|2FL6|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 6
pdb|2FL6|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 6
pdb|2IEH|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)- Mon97, A New Monastrol-Based Inhibitor That Binds
As (R)- Enantiomer
pdb|2IEH|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)- Mon97, A New Monastrol-Based Inhibitor That Binds
As (R)- Enantiomer
pdb|2Q2Y|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2Q2Y|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2Q2Z|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 22
pdb|2Q2Z|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 22
pdb|3CJO|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 30
pdb|3CJO|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 30
Length = 367
Score = 190 bits (483), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 131/352 (37%), Positives = 189/352 (53%), Gaps = 26/352 (7%)
Query: 22 IFVSVRLRPLNEKEIARNDVSDWECINDSTIIYRNNLSVAERSMYPTSYTFDRVFSCDCT 81
I V VR RP N E + S EC + +A++S T YTFD VF
Sbjct: 18 IQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKT-YTFDMVFGASTK 76
Query: 82 TRKVYEEGAKEVALAVVSGINSSVFAYGQTSSGKTYTM-----------------IGITE 124
VY + V+ G N ++FAYGQT +GKT+TM GI
Sbjct: 77 QIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIP 136
Query: 125 YTMSDIYDYIEKHKEREFVLKFSAMEIYNESVRDLL--SADTSP-LRLLDDP--ERGTIV 179
T+ I++ + + EF +K S +EIYNE + DLL S+D S L++ DDP +RG I+
Sbjct: 137 RTLHQIFEKLTDNGT-EFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRGVII 195
Query: 180 EKLTEETLKDWNHLKELLSTCEAQRQIGETSLNETSSRSHQILRLTVESSACEFIGNDPS 239
+ L E T+ + + + ++L A+R T +N SSRSH + +T+ G +
Sbjct: 196 KGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGEELV 255
Query: 240 SLTATVNFVDLAGSERASQALSAGTRLKEGCHINRSLLTLGTVIRKLSKGRNGHVPFRDS 299
+ +N VDLAGSE ++ + R +E +IN+SLLTLG VI L + R HVP+R+S
Sbjct: 256 KI-GKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVE-RTPHVPYRES 313
Query: 300 KLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLLFASCAKEVTTNAQVN 351
KLTRILQ SLGG RT+II T+SPA ++E++ +TL +A AK + +VN
Sbjct: 314 KLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNKPEVN 365
>pdb|4A28|A Chain A, Eg5-2
pdb|4A28|B Chain B, Eg5-2
Length = 368
Score = 189 bits (481), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 131/352 (37%), Positives = 189/352 (53%), Gaps = 26/352 (7%)
Query: 22 IFVSVRLRPLNEKEIARNDVSDWECINDSTIIYRNNLSVAERSMYPTSYTFDRVFSCDCT 81
I V VR RP N E + S EC + +A++S T YTFD VF
Sbjct: 19 IQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKT-YTFDMVFGASTK 77
Query: 82 TRKVYEEGAKEVALAVVSGINSSVFAYGQTSSGKTYTM-----------------IGITE 124
VY + V+ G N ++FAYGQT +GKT+TM GI
Sbjct: 78 QIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLDGIIP 137
Query: 125 YTMSDIYDYIEKHKEREFVLKFSAMEIYNESVRDLL--SADTSP-LRLLDDP--ERGTIV 179
T+ I++ + + EF +K S +EIYNE + DLL S+D S L++ DDP +RG I+
Sbjct: 138 RTLHQIFEKLTDNGT-EFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRGVII 196
Query: 180 EKLTEETLKDWNHLKELLSTCEAQRQIGETSLNETSSRSHQILRLTVESSACEFIGNDPS 239
+ L E T+ + + + ++L A+R T +N SSRSH + +T+ G +
Sbjct: 197 KGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGEELV 256
Query: 240 SLTATVNFVDLAGSERASQALSAGTRLKEGCHINRSLLTLGTVIRKLSKGRNGHVPFRDS 299
+ +N VDLAGSE ++ + R +E +IN+SLLTLG VI L + R HVP+R+S
Sbjct: 257 KI-GKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVE-RTPHVPYRES 314
Query: 300 KLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLLFASCAKEVTTNAQVN 351
KLTRILQ SLGG RT+II T+SPA ++E++ +TL +A AK + +VN
Sbjct: 315 KLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNKPEVN 366
>pdb|1GOJ|A Chain A, Structure Of A Fast Kinesin: Implications For Atpase
Mechanism And Interactions With Microtubules
Length = 355
Score = 189 bits (481), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 111/311 (35%), Positives = 168/311 (54%), Gaps = 21/311 (6%)
Query: 69 SYTFDRVFSCDCTTRKVYEEGAKEVALAVVSGINSSVFAYGQTSSGKTYTMIG------- 121
S+TFDRVF C +++ K +++G N +VFAYGQT +GK+YTM+G
Sbjct: 48 SFTFDRVFDMSCKQSDIFDFSIKPTVDDILNGYNGTVFAYGQTGAGKSYTMMGTSIDDPD 107
Query: 122 -------ITEYTMSDIYDYIEKHKEREFVLKFSAMEIYNESVRDLLSADTSPLRLLDDPE 174
I E + I + E+ ++ S MEIY E +RDLL+ L + ++
Sbjct: 108 GRGVIPRIVEQIFTSI---LSSAANIEYTVRVSYMEIYMERIRDLLAPQNDNLPVHEEKN 164
Query: 175 RGTIVEKLTEETLKDWNHLKELLSTCEAQRQIGETSLNETSSRSHQILRLTVESSACEFI 234
RG V+ L E + + E++ R + T++N+ SSRSH I +T+ E
Sbjct: 165 RGVYVKGLLEIYVSSVQEVYEVMRRGGNARAVAATNMNQESSRSHSIFVITITQKNVE-- 222
Query: 235 GNDPSSLTATVNFVDLAGSERASQALSAGTRLKEGCHINRSLLTLGTVIRKLSKGRNGHV 294
S+ + + VDLAGSE+ + ++G L+E IN+SL LG VI L+ G++ HV
Sbjct: 223 --TGSAKSGQLFLVDLAGSEKVGKTGASGQTLEEAKKINKSLSALGMVINALTDGKSSHV 280
Query: 295 PFRDSKLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLLFASCAKEVTTNAQVNIVM 354
P+RDSKLTRILQ SLGGN+RT +I SP+ + ++ +TL F AK + A+VN +
Sbjct: 281 PYRDSKLTRILQESLGGNSRTTLIINCSPSSYNDAETLSTLRFGMRAKSIKNKAKVNAEL 340
Query: 355 SDKALVKHLQR 365
S L + L +
Sbjct: 341 SPAELKQMLAK 351
>pdb|3LRE|A Chain A, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain
pdb|3LRE|B Chain B, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain
Length = 355
Score = 187 bits (475), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 119/344 (34%), Positives = 184/344 (53%), Gaps = 25/344 (7%)
Query: 24 VSVRLRPLNEKEIARNDVSDWECINDSTIIY--------------RNNLSVAERSMYPTS 69
V VR+RP N KE A ++ +++ N +V ++
Sbjct: 14 VVVRVRPENTKEKAAGFHKVVHVVDKHILVFDPKQEEVSFFHGKKTTNQNVIKKQNKDLK 73
Query: 70 YTFDRVFSCDCTTRKVYEEGAKEVALAVVSGINSSVFAYGQTSSGKTYTMIG------IT 123
+ FD VF T +V+E K + + ++G N +V AYG T +GKT+TM+G +
Sbjct: 74 FVFDAVFDETSTQSEVFEHTTKPILRSFLNGYNCTVLAYGATGAGKTHTMLGSADEPGVM 133
Query: 124 EYTMSDIYDYIEKHKEREFV-LKFSAMEIYNESVRDLLSADTSPLRLLDDPERGTIVEKL 182
TM +Y +++ KE + S +E+YNE +RDLL ++ PL + +D ++G +V L
Sbjct: 134 YLTMLHLYKCMDEIKEEKICSTAVSYLEVYNEQIRDLL-VNSGPLAVREDTQKGVVVHGL 192
Query: 183 TEETLKDWNHLKELLSTCEAQRQIGETSLNETSSRSHQILRLTVESSACEFIGNDPSSLT 242
T K + LL R T +N TSSRSH + ++ + N +
Sbjct: 193 TLHQPKSSEEILHLLDNGNKNRTQHPTDMNATSSRSHAVFQIYLRQQDKTASINQNVRI- 251
Query: 243 ATVNFVDLAGSERASQALSAGTRLKEGCHINRSLLTLGTVIRKL--SKGRNGHVPFRDSK 300
A ++ +DLAGSERAS + + GTR EG +INRSLL LG VI L SK +N H+P+R+SK
Sbjct: 252 AKMSLIDLAGSERASTSGAKGTRFVEGTNINRSLLALGNVINALADSKRKNQHIPYRNSK 311
Query: 301 LTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLLFASCAKEV 344
LTR+L+ SLGGN +T +I +SP+ + + NTL +A+ AK++
Sbjct: 312 LTRLLKDSLGGNCQTIMIAAVSPSSVFYDDTYNTLKYANRAKDI 355
>pdb|1SDM|A Chain A, Crystal Structure Of Kinesin-Like Calmodulin Binding
Protein
pdb|3CNZ|A Chain A, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3CNZ|B Chain B, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3COB|A Chain A, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3COB|C Chain C, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
Length = 369
Score = 187 bits (474), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 123/353 (34%), Positives = 195/353 (55%), Gaps = 22/353 (6%)
Query: 21 RIFVSVRLRPLNEKEIARNDVSDWECINDSTIIYRNNLSVAERSMYPTSYTFDRVFSCDC 80
+I V RLRPL EKEI + + +++ T+ + A++ MY DRVF +
Sbjct: 6 KIRVYCRLRPLCEKEIIAKERNAIRSVDEFTVEHLWKDDKAKQHMY------DRVFDGNA 59
Query: 81 TTRKVYEEGAKEVALAVVSGINSSVFAYGQTSSGKTYTMIG------ITEYTMSDIYDYI 134
T V+E+ K + + V G N +FAYGQT SGKT+T+ G +T MS+++ +
Sbjct: 60 TQDDVFED-TKYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGADSNPGLTPRAMSELFRIM 118
Query: 135 EKHKER-EFVLKFSAMEIYNESVRDLL---SADTSPLRLLDDPERGTIVEKLTEETLKDW 190
+K + F LK +E+Y +++ DLL A L + D + VE +T ++ +
Sbjct: 119 KKDSNKFSFSLKAYMVELYQDTLVDLLLPKQAKRLKLDIKKDSKGMVSVENVTVVSISTY 178
Query: 191 NHLKELLSTCEAQRQIGETSLNETSSRSHQILRLTVESSACEFIGNDPSSLTATVNFVDL 250
LK ++ QR T +NE SSRSH I+ + +ES+ + + ++FVDL
Sbjct: 179 EELKTIIQRGSEQRHTTGTLMNEQSSRSHLIVSVIIESTNLQ----TQAIARGKLSFVDL 234
Query: 251 AGSERASQALSAGTRLKEGCHINRSLLTLGTVIRKLSKGRNGHVPFRDSKLTRILQSSLG 310
AGSER ++ SAG +LKE IN+SL LG VI LS G N H+P+R+ KLT ++ SLG
Sbjct: 235 AGSERVKKSGSAGNQLKEAQSINKSLSALGDVISALSSG-NQHIPYRNHKLTMLMSDSLG 293
Query: 311 GNARTAIICTLSPARSHVEQSRNTLLFASCAKEVTTNAQVNIVMSDKALVKHL 363
GNA+T + +SPA S+++++ N+L +AS + + + N+ + A +K L
Sbjct: 294 GNAKTLMFVNISPAESNLDETHNSLTYASRVRSIVNDPSKNVSSKEVARLKKL 346
>pdb|3ZCW|A Chain A, Eg5 - New Allosteric Binding Site
Length = 348
Score = 187 bits (474), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 129/345 (37%), Positives = 186/345 (53%), Gaps = 26/345 (7%)
Query: 22 IFVSVRLRPLNEKEIARNDVSDWECINDSTIIYRNNLSVAERSMYPTSYTFDRVFSCDCT 81
I V VR RP N E + S EC + +A++S T YTFD VF
Sbjct: 4 IQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKT-YTFDMVFGASTK 62
Query: 82 TRKVYEEGAKEVALAVVSGINSSVFAYGQTSSGKTYTM-----------------IGITE 124
VY + V+ G N ++FAYGQT +GKT+TM GI
Sbjct: 63 QIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIP 122
Query: 125 YTMSDIYDYIEKHKEREFVLKFSAMEIYNESVRDLL--SADTSP-LRLLDDP--ERGTIV 179
T+ I++ + + EF +K S +EIYNE + DLL S+D S L++ DDP +RG I+
Sbjct: 123 RTLHQIFEKLTDNGT-EFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRGVII 181
Query: 180 EKLTEETLKDWNHLKELLSTCEAQRQIGETSLNETSSRSHQILRLTVESSACEFIGNDPS 239
+ L E T+ + + + ++L A+R T +N SSRSH + +T+ G +
Sbjct: 182 KGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGEELV 241
Query: 240 SLTATVNFVDLAGSERASQALSAGTRLKEGCHINRSLLTLGTVIRKLSKGRNGHVPFRDS 299
+ +N VDLAGSE ++ + R +E +IN+SLLTLG VI L + R HVP+R+S
Sbjct: 242 KI-GKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVE-RTPHVPYRES 299
Query: 300 KLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLLFASCAKEV 344
KLTRILQ SLGG RT+II T+SPA ++E++ +TL +A AK +
Sbjct: 300 KLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNI 344
>pdb|1IA0|K Chain K, Kif1a Head-Microtubule Complex Structure In Atp-Form
pdb|2HXF|C Chain C, Kif1a Head-Microtubule Complex Structure In Amppnp-Form
pdb|2HXH|C Chain C, Kif1a Head-Microtubule Complex Structure In Adp-Form
Length = 394
Score = 186 bits (473), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 122/367 (33%), Positives = 197/367 (53%), Gaps = 40/367 (10%)
Query: 22 IFVSVRLRPLNEKEIARNDVSDWECI---NDSTIIYRNNLSVAERSMYPTSYTFDRVFSC 78
+ V+VR+RP N +E++R D +CI + ST N E P S++FD +
Sbjct: 22 VKVAVRVRPFNSREMSR----DSKCIIQMSGSTTTIVNPKQPKET---PKSFSFDYSYWS 74
Query: 79 D--------CTTRKVYEEGAKEVALAVVSGINSSVFAYGQTSSGKTYTMIG--------I 122
+ ++VY + +E+ G N +FAYGQT +GK+YTM+G I
Sbjct: 75 HTSPEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQGI 134
Query: 123 TEYTMSDIYDYIE--KHKEREFVLKFSAMEIYNESVRDLLS-ADTSPLRLLDDPERGTIV 179
D++ I + + ++ S MEIY E VRDLL+ + LR+ + P G V
Sbjct: 135 IPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKNKGNLRVREHPLLGPYV 194
Query: 180 EKLTEETLKDWNHLKELLSTCEAQRQIGETSLNETSSRSHQILRLTVESSACEFIGNDPS 239
E L++ + +N +++L+ + R + T++NETSSRSH + + + N +
Sbjct: 195 EDLSKLAVTSYNDIQDLMDSGNKARTVAATNMNETSSRSHAVFNIIFTQKRHDAETNITT 254
Query: 240 SLTATVNFVDLAGSERASQALSAGTRLKEGCHINRSLLTLGTVIRKLSKGRNG------- 292
+ ++ VDLAGSERA + GTRLKEG +IN+SL TLG VI L++ +G
Sbjct: 255 EKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKK 314
Query: 293 ----HVPFRDSKLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLLFASCAKEVTTNA 348
+P+RDS LT +L+ +LGGN+RTA++ LSPA + +++ +TL +A AK++
Sbjct: 315 KKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQIRNTV 374
Query: 349 QVNIVMS 355
VN+ ++
Sbjct: 375 SVNLELT 381
>pdb|1I5S|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Adp
Length = 367
Score = 186 bits (471), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 122/361 (33%), Positives = 193/361 (53%), Gaps = 40/361 (11%)
Query: 24 VSVRLRPLNEKEIARNDVSDWECI---NDSTIIYRNNLSVAERSMYPTSYTFDRVFSCD- 79
V+VR+RP N +E++R D +CI + ST N E P S++FD +
Sbjct: 8 VAVRVRPFNSREMSR----DSKCIIQMSGSTTTIVNPKQPKET---PKSFSFDYSYWSHT 60
Query: 80 -------CTTRKVYEEGAKEVALAVVSGINSSVFAYGQTSSGKTYTMIG--------ITE 124
+ ++VY + +E+ G N +FAYGQT +GK+YTM+G I
Sbjct: 61 SPEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQGIIP 120
Query: 125 YTMSDIYDYIE--KHKEREFVLKFSAMEIYNESVRDLLS-ADTSPLRLLDDPERGTIVEK 181
D++ I + + ++ S MEIY E VRDLL+ + LR+ + P G VE
Sbjct: 121 QLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKNKGNLRVREHPLLGPYVED 180
Query: 182 LTEETLKDWNHLKELLSTCEAQRQIGETSLNETSSRSHQILRLTVESSACEFIGNDPSSL 241
L++ + +N +++L+ + R + T++NETSSRSH + + + N +
Sbjct: 181 LSKLAVTSYNDIQDLMDSGNKARTVAATNMNETSSRSHAVFNIIFTQKRHDAETNITTEK 240
Query: 242 TATVNFVDLAGSERASQALSAGTRLKEGCHINRSLLTLGTVIRKLSKGRNG--------- 292
+ ++ VDLAGSERA + GTRLKEG +IN+SL TLG VI L++ +G
Sbjct: 241 VSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKK 300
Query: 293 --HVPFRDSKLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLLFASCAKEVTTNAQV 350
+P+RDS LT +L+ +LGGN+RTA++ LSPA + +++ +TL +A AK++ V
Sbjct: 301 TDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQIRNTVSV 360
Query: 351 N 351
N
Sbjct: 361 N 361
>pdb|1I6I|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppcp
Length = 366
Score = 185 bits (470), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 122/361 (33%), Positives = 193/361 (53%), Gaps = 40/361 (11%)
Query: 24 VSVRLRPLNEKEIARNDVSDWECI---NDSTIIYRNNLSVAERSMYPTSYTFDRVFSCD- 79
V+VR+RP N +E++R D +CI + ST N E P S++FD +
Sbjct: 8 VAVRVRPFNSREMSR----DSKCIIQMSGSTTTIVNPKQPKET---PKSFSFDYSYWSHT 60
Query: 80 -------CTTRKVYEEGAKEVALAVVSGINSSVFAYGQTSSGKTYTMIG--------ITE 124
+ ++VY + +E+ G N +FAYGQT +GK+YTM+G I
Sbjct: 61 SPEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQGIIP 120
Query: 125 YTMSDIYDYIE--KHKEREFVLKFSAMEIYNESVRDLLS-ADTSPLRLLDDPERGTIVEK 181
D++ I + + ++ S MEIY E VRDLL+ + LR+ + P G VE
Sbjct: 121 QLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKNKGNLRVREHPLLGPYVED 180
Query: 182 LTEETLKDWNHLKELLSTCEAQRQIGETSLNETSSRSHQILRLTVESSACEFIGNDPSSL 241
L++ + +N +++L+ + R + T++NETSSRSH + + + N +
Sbjct: 181 LSKLAVTSYNDIQDLMDSGNKARTVAATNMNETSSRSHAVFNIIFTQKRHDAETNITTEK 240
Query: 242 TATVNFVDLAGSERASQALSAGTRLKEGCHINRSLLTLGTVIRKLSKGRNG--------- 292
+ ++ VDLAGSERA + GTRLKEG +IN+SL TLG VI L++ +G
Sbjct: 241 VSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKK 300
Query: 293 --HVPFRDSKLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLLFASCAKEVTTNAQV 350
+P+RDS LT +L+ +LGGN+RTA++ LSPA + +++ +TL +A AK++ V
Sbjct: 301 TDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQIRNTVSV 360
Query: 351 N 351
N
Sbjct: 361 N 361
>pdb|1VFV|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppnp
pdb|1VFW|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppnp
pdb|1VFX|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Adp-mg-alfx
pdb|1VFZ|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Adp-Mg-Vo4
pdb|2ZFI|A Chain A, Crystal Structure Of The Kif1a Motor Domain Before Mg
Release
pdb|2ZFJ|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-1
pdb|2ZFK|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-2
pdb|2ZFL|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-3
pdb|2ZFM|A Chain A, Crystal Structure Of The Kif1a Motor Domain After Mg
Release
Length = 366
Score = 185 bits (470), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 122/363 (33%), Positives = 194/363 (53%), Gaps = 40/363 (11%)
Query: 22 IFVSVRLRPLNEKEIARNDVSDWECI---NDSTIIYRNNLSVAERSMYPTSYTFDRVFSC 78
+ V+VR+RP N +E++R D +CI + ST N E P S++FD +
Sbjct: 6 VKVAVRVRPFNSREMSR----DSKCIIQMSGSTTTIVNPKQPKET---PKSFSFDYSYWS 58
Query: 79 D--------CTTRKVYEEGAKEVALAVVSGINSSVFAYGQTSSGKTYTMIG--------I 122
+ ++VY + +E+ G N +FAYGQT +GK+YTM+G I
Sbjct: 59 HTSPEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQGI 118
Query: 123 TEYTMSDIYDYIEK--HKEREFVLKFSAMEIYNESVRDLLS-ADTSPLRLLDDPERGTIV 179
D++ I + + ++ S MEIY E VRDLL+ + LR+ + P G V
Sbjct: 119 IPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKNKGNLRVREHPLLGPYV 178
Query: 180 EKLTEETLKDWNHLKELLSTCEAQRQIGETSLNETSSRSHQILRLTVESSACEFIGNDPS 239
E L++ + +N +++L+ + R + T++NETSSRSH + + + N +
Sbjct: 179 EDLSKLAVTSYNDIQDLMDSGNKPRTVAATNMNETSSRSHAVFNIIFTQKRHDAETNITT 238
Query: 240 SLTATVNFVDLAGSERASQALSAGTRLKEGCHINRSLLTLGTVIRKLSKGRNG------- 292
+ ++ VDLAGSERA + GTRLKEG +IN+SL TLG VI L++ +G
Sbjct: 239 EKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKK 298
Query: 293 ----HVPFRDSKLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLLFASCAKEVTTNA 348
+P+RDS LT +L+ +LGGN+RTA++ LSPA + +++ +TL +A AK++
Sbjct: 299 KKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQIRNTV 358
Query: 349 QVN 351
VN
Sbjct: 359 SVN 361
>pdb|3GBJ|A Chain A, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
pdb|3GBJ|B Chain B, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
pdb|3GBJ|C Chain C, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
Length = 354
Score = 185 bits (470), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 119/353 (33%), Positives = 197/353 (55%), Gaps = 37/353 (10%)
Query: 21 RIFVSVRLRPLNEKEIARNDVSDWECIND---STIIYR---NNLSVAERSMYPTSYTFDR 74
++ V+VR+RP+N +E + +C+ D + +I NLS + P + +D
Sbjct: 2 KVKVAVRIRPMNRRETDLHT----KCVVDVDANKVILNPVNTNLSKGDARGQPKVFAYDH 57
Query: 75 VF-SCDCTTRKVYEEGAKEVALAVVS---------GINSSVFAYGQTSSGKTYTMIGITE 124
F S D + ++ Y +++ + G N+ +FAYGQT SGK+YTM+G +
Sbjct: 58 CFWSMDESVKEKY--AGQDIVFKCLGENILQNAFDGYNACIFAYGQTGSGKSYTMMGTAD 115
Query: 125 Y------TMSDIYDYIEK--HKEREFVLKFSAMEIYNESVRDLLSADTS--PLRLLDDPE 174
S +++ +K ++E+ F ++ S MEIYNE VRDLL S L++ +
Sbjct: 116 QPGLIPRLCSGLFERTQKEENEEQSFKVEVSYMEIYNEKVRDLLDPKGSRQTLKVREHSV 175
Query: 175 RGTIVEKLTEETLKDWNHLKELLSTCEAQRQIGETSLNETSSRSHQILRLTVESSACEFI 234
G V+ L++ + + ++ L+S R + T++NE SSRSH + ++T+ + +
Sbjct: 176 LGPYVDGLSKLAVTSYKDIESLMSEGNKSRTVAATNMNEESSRSHAVFKITLTHTLYDVK 235
Query: 235 GNDPSSLTATVNFVDLAGSERASQALSAGTRLKEGCHINRSLLTLGTVIRKLS-----KG 289
++ VDLAGSERA++ +AG RLKEG +IN+SL TLG VI L+ K
Sbjct: 236 SGTSGEKVGKLSLVDLAGSERATKTGAAGDRLKEGSNINKSLTTLGLVISALADQSAGKN 295
Query: 290 RNGHVPFRDSKLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLLFASCAK 342
+N VP+RDS LT +L+ SLGGN++TA++ T+SPA + +++ +TL +A AK
Sbjct: 296 KNKFVPYRDSVLTWLLKDSLGGNSKTAMVATVSPAADNYDETLSTLRYADRAK 348
>pdb|4A14|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling
Length = 344
Score = 181 bits (460), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 137/370 (37%), Positives = 189/370 (51%), Gaps = 56/370 (15%)
Query: 1 MGAAGDEEPMQAQSQSGCPERIFVSVRLRPLNEKEIARNDVSDWECINDSTIIYRNNLSV 60
MG G EE P R V++R+RPL KE+ S C+ + R L
Sbjct: 3 MGLPGAEE---------APVR--VALRVRPLLPKELLHGHQS---CLQVEPGLGRVTLG- 47
Query: 61 AERSMYPTSYTFDRVFSCDCTTRKVYEEGAKEVALAVVSGINSSVFAYGQTSSGKTYTM- 119
R + + F V + D VY+ + + A G N++VFAYGQT SGKTYTM
Sbjct: 48 --RDRH---FGFHVVLAEDAGQEAVYQACVQPLLEAFFEGFNATVFAYGQTGSGKTYTMG 102
Query: 120 -----------IGITEYTMSDIYDYIEKHKEREFVLKFSAMEIYNESVRDLLSADTSP-- 166
GI M++ + I+++ + ++ S +E+Y E RDLL T+
Sbjct: 103 EASVASLLEDEQGIVPRAMAEAFKLIDENDLLDCLVHVSYLEVYKEEFRDLLEVGTASRD 162
Query: 167 LRLLDDPERGTIVEKLTEETLKDWNHLKELLSTCE---AQRQIGETSLNETSSRSHQILR 223
++L +D ERG +V +E D L E+LS E A R G T LN SSRSH +
Sbjct: 163 IQLRED-ERGNVVLCGVKEV--DVEGLDEVLSLLEMGNAARHTGATHLNHLSSRSHTVFT 219
Query: 224 LTVESSACEFIGNDPSSL---------TATVNFVDLAGSERASQALSAGTRLKEGCHINR 274
+T+E G PS L + +FVDLAGSER + S G RLKE IN
Sbjct: 220 VTLEQR-----GRAPSRLPRPAPGQLLVSKFHFVDLAGSERVLKTGSTGERLKESIQINS 274
Query: 275 SLLTLGTVIRKLS--KGRNGHVPFRDSKLTRILQSSLGGNARTAIICTLSPARSHVEQSR 332
SLL LG VI L + R H+P+RDSK+TRIL+ SLGGNA+T +I +SP+ S +++
Sbjct: 275 SLLALGNVISALGDPQRRGSHIPYRDSKITRILKDSLGGNAKTVMIACVSPSSSDFDETL 334
Query: 333 NTLLFASCAK 342
NTL +AS A+
Sbjct: 335 NTLNYASRAQ 344
>pdb|3H4S|A Chain A, Structure Of The Complex Of A Mitotic Kinesin With Its
Calcium Binding Regulator
Length = 386
Score = 180 bits (456), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 118/351 (33%), Positives = 194/351 (55%), Gaps = 24/351 (6%)
Query: 21 RIFVSVRLRPLNEKEIARNDVSDWECINDSTIIYRNNLSVAERSMYPTSYTFDRVFSCDC 80
+I V R+RPLNEKE + + +++ T+ + + + +DRVF
Sbjct: 14 KIRVYCRIRPLNEKESSEREKQMLTTVDEFTVEH------PWKDDKRKQHIYDRVFDMRA 67
Query: 81 TTRKVYEEGAKEVALAVVSGINSSVFAYGQTSSGKTYTMIG------ITEYTMSDIYDYI 134
+ ++E+ K + + V G N +FAYGQT SGKT+T+ G +T ++++ +
Sbjct: 68 SQDDIFED-TKYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGHESNPGLTPRATKELFNIL 126
Query: 135 EKHKER-EFVLKFSAMEIYNESVRDLL---SADTSPLRLLDDPERGTIVEKLTEETLKDW 190
++ +R F LK +E+Y +++ DLL SA L + D + VE +T +
Sbjct: 127 KRDSKRFSFSLKAYMVELYQDTLVDLLLPKSARRLKLEIKKDSKGMVFVENVTTIPISTL 186
Query: 191 NHLKELLSTCEAQRQIGETSLNETSSRSHQILRLTVESSACEFIGNDPSSLTATVNFVDL 250
L+ +L +R + T++NE SSRSH IL + +ES + S+ ++FVDL
Sbjct: 187 EELRMILERGSERRHVSGTNMNEESSRSHLILSVVIESIDLQ----TQSAARGKLSFVDL 242
Query: 251 AGSERASQALSAGTRLKEGCHINRSLLTLGTVIRKLSKGRNGHVPFRDSKLTRILQSSLG 310
AGSER ++ SAG +LKE IN+SL LG VI LS G N H+P+R+ KLT ++ SLG
Sbjct: 243 AGSERVKKSGSAGNQLKEAQSINKSLSALGDVIGALSSG-NQHIPYRNHKLTMLMSDSLG 301
Query: 311 GNARTAIICTLSPARSHVEQSRNTLLFASCAKEVTTNAQVNIVMSDKALVK 361
GNA+T + +SPA S+++++ N+LL+AS + + + +I S K +V+
Sbjct: 302 GNAKTLMFVNVSPAESNLDETYNSLLYASRVRTIVNDPSKHI--SSKEMVR 350
>pdb|2H58|A Chain A, Crystal Structure Of The Kifc3 Motor Domain In Complex
With Adp
Length = 330
Score = 172 bits (437), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 106/288 (36%), Positives = 160/288 (55%), Gaps = 16/288 (5%)
Query: 67 PTSYTFDRVFSCDCTTRKVYEEGAKEVALAVVSGINSSVFAYGQTSSGKTYTM------I 120
P S+ D+VFS + + V++E + + + + G N +FAYGQT +GKTYTM
Sbjct: 47 PVSFELDKVFSPQASQQDVFQE-VQALVTSCIDGFNVCIFAYGQTGAGKTYTMEGTAENP 105
Query: 121 GITEYTMSDIYDYI-EKHKEREFVLKFSAMEIYNESVRDLLSADTSP---LRLLDDPERG 176
GI + + ++ + EK + E+ + SA EIYNE +RDLL + +RL D
Sbjct: 106 GINQRALQLLFSEVQEKASDWEYTITVSAAEIYNEVLRDLLGKEPQEKLEIRLCPDGSGQ 165
Query: 177 TIVEKLTEETLKDWNHLKELLSTCEAQRQIGETSLNETSSRSHQILRLTVESSACEFIGN 236
V LTE ++ + + ++ R T+LNE SSRSH +L +TV C +
Sbjct: 166 LYVPGLTEFQVQSVDDINKVFEFGHTNRTTEFTNLNEHSSRSHALLIVTVRGVDC----S 221
Query: 237 DPSSLTATVNFVDLAGSERASQALSAGTRLKEGCHINRSLLTLGTVIRKLSKGRNGHVPF 296
T +N VDLAGSER ++ + G+RL+E HIN+SL LG VI L + R GHVPF
Sbjct: 222 TGLRTTGKLNLVDLAGSERVGKSGAEGSRLREAQHINKSLSALGDVIAAL-RSRQGHVPF 280
Query: 297 RDSKLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLLFASCAKEV 344
R+SKLT +LQ SL G+++T ++ +SP + ++ +L FA + V
Sbjct: 281 RNSKLTYLLQDSLSGDSKTLMVVQVSPVEKNTSETLYSLKFAERVRSV 328
>pdb|2XT3|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling
Length = 344
Score = 171 bits (432), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 133/370 (35%), Positives = 187/370 (50%), Gaps = 56/370 (15%)
Query: 1 MGAAGDEEPMQAQSQSGCPERIFVSVRLRPLNEKEIARNDVSDWECINDSTIIYRNNLSV 60
MG G EE P R V++R+RPL KE+ S C+ + R L
Sbjct: 3 MGLPGAEE---------APVR--VALRVRPLLPKELLHGHQS---CLQVEPGLGRVTLG- 47
Query: 61 AERSMYPTSYTFDRVFSCDCTTRKVYEEGAKEVALAVVSGINSSVFAYGQTSSGKTYTM- 119
R + + F V + D VY+ + + A G N++VFAYGQT SGKTYTM
Sbjct: 48 --RDRH---FGFHVVLAEDAGQEAVYQACVQPLLEAFFEGFNATVFAYGQTGSGKTYTMG 102
Query: 120 -----------IGITEYTMSDIYDYIEKHKEREFVLKFSAMEIYNESVRDLLSADTSP-- 166
GI M++ + I+++ + ++ S +E+Y E RDLL T+
Sbjct: 103 EASVASLLEDEQGIVPRAMAEAFKLIDENDLLDCLVHVSYLEVYKEEFRDLLEVGTASRD 162
Query: 167 LRLLDDPERGTIVEKLTEETLKDWNHLKELLSTCE---AQRQIGETSLNETSSRSHQILR 223
++L +D ERG +V +E D L E+LS E A R G T LN SSRSH +
Sbjct: 163 IQLRED-ERGNVVLCGVKEV--DVEGLDEVLSLLEMGNAARHTGATHLNHLSSRSHTVFT 219
Query: 224 LTVESSACEFIGNDPSSL---------TATVNFVDLAGSERASQALSAGTRLKEGCHINR 274
+T++ G PS L + +FVDLAGSER + S G KE IN
Sbjct: 220 VTLKQR-----GRAPSRLPRPAPGQLLVSKFHFVDLAGSERVLKTGSTGELRKESIQINS 274
Query: 275 SLLTLGTVIRKLS--KGRNGHVPFRDSKLTRILQSSLGGNARTAIICTLSPARSHVEQSR 332
SLL LG VI L + R ++P+RDSK+TRIL+ SLGGNA+T +I +SP+ S +++
Sbjct: 275 SLLALGNVISALGDPQRRGSNIPYRDSKITRILKDSLGGNAKTVMIACVSPSSSDFDETL 334
Query: 333 NTLLFASCAK 342
NTL +AS A+
Sbjct: 335 NTLNYASRAQ 344
>pdb|2OWM|A Chain A, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|B Chain B, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|C Chain C, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|D Chain D, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
Length = 443
Score = 164 bits (415), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 110/328 (33%), Positives = 171/328 (52%), Gaps = 45/328 (13%)
Query: 69 SYTFDRVFSCD-------CTTRKVYEEGAKEVALAVVSGINSSVFAYGQTSSGKTYTMIG 121
S+TFD+ F T VY+ +E G ++ +FAYGQT SGK+YTM+G
Sbjct: 97 SFTFDKSFWSHNTEDEHYATQEHVYDSLGEEFLDHNFEGYHTCIFAYGQTGSGKSYTMMG 156
Query: 122 ------ITEYTMSDIYDYIEKHKER----EFVLKFSAMEIYNESVRDLLSA---DTSP-- 166
+ T D++ I ++ + +K S E+YNE VRDLL+ + P
Sbjct: 157 TPDQPGLIPRTCEDLFQRIASAQDETPNISYNVKVSYFEVYNEHVRDLLAPVVPNKPPYY 216
Query: 167 LRLLDDPERGTIVEKLTEETLKDWNHLKELLSTCEAQRQIGETSLNETSSRSHQILRLTV 226
L++ + P G V+ LTE ++ + + + R + T +N+TSSRSH + + +
Sbjct: 217 LKVRESPTEGPYVKDLTEVPVRGLEEIIRWMRIGDGSRTVASTKMNDTSSRSHAVFTIML 276
Query: 227 ESSACEFIGNDPSSLTATVNFVDLAGSERASQALSAGTRLKEGCHINRSLLTLGTVIRKL 286
+ + +D + ++ + VDLAGSERA + G RL+EG +IN+SL TLG VI L
Sbjct: 277 KQIHHDLETDDTTERSSRIRLVDLAGSERAKSTEATGQRLREGSNINKSLTTLGRVIAAL 336
Query: 287 S----------------KGR-----NGHVPFRDSKLTRILQSSLGGNARTAIICTLSPAR 325
+ +GR N VP+RDS LT +L+ SLGGN++TA+I +SP
Sbjct: 337 ADPKSSASRPSSPVKSGRGRTPGPANSVVPYRDSVLTWLLKDSLGGNSKTAMIACISP-- 394
Query: 326 SHVEQSRNTLLFASCAKEVTTNAQVNIV 353
+ +++ +TL +A AK + T A VN V
Sbjct: 395 TDYDETLSTLRYADQAKRIRTRAVVNQV 422
>pdb|3U06|A Chain A, Crystal Structure Of The Kinesin-14 Ncdg347d
pdb|3U06|B Chain B, Crystal Structure Of The Kinesin-14 Ncdg347d
Length = 412
Score = 159 bits (403), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 114/333 (34%), Positives = 178/333 (53%), Gaps = 27/333 (8%)
Query: 20 ERIFVSVRLRPLNEKEIARNDVSDWECINDSTIIYRNNLSVAERSMYPTSYTFDRVFSCD 79
+ I V R+RP E E R W ++ST+ ++ + A+ M ++FD+VF
Sbjct: 59 DNIRVFCRIRPPLESEENRM-CCTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQVFHPL 117
Query: 80 CTTRKVYEEGAKEVALAVVSGINSSVFAYGQTSSGKTYTM------IGITEYTMSDIYDY 133
+ ++E + + A+ G N +FAYGQT SGKTYTM +G+ T+ ++D
Sbjct: 118 SSQSDIFEMVSPLIQSAL-DGYNICIFAYGQTGSGKTYTMDGVPESVGVIPRTVDLLFDS 176
Query: 134 IEKHKER--EFVLKFSAMEIYNESVRDLLSADTSPL--RLLDDPERGTIVEKLTEETLKD 189
I ++ E+ +K + +EIYNE + DLLS + + R+ + + V +TEET+ D
Sbjct: 177 IRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKNNKNDIYVSNITEETVLD 236
Query: 190 WNHLKELLSTCEAQRQIGETSLNETSSRSHQILRLTVESSACEFIGNDPSSL---TATVN 246
NHL+ L+ T + R T+ NE SSRSH + +L E IG ++N
Sbjct: 237 PNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKL-------ELIGRHAEKQEISVGSIN 289
Query: 247 FVDLAGSERASQALSAGTRLKEGCHINRSLLTLGTVIRKLSKGRNGHVPFRDSKLTRILQ 306
VDLAGSE + TR+ E +INRSL L VI L + + H+P+R+SKLT +L
Sbjct: 290 LVDLAGSESPKTS----TRMTETKNINRSLSELTNVILALLQ-KQDHIPYRNSKLTHLLM 344
Query: 307 SSLGGNARTAIICTLSPARSHVEQSRNTLLFAS 339
SLGGN++T + +SP + ++S +L FA+
Sbjct: 345 PSLGGNSKTLMFINVSPFQDCFQESVKSLRFAA 377
>pdb|2NCD|A Chain A, Ncd (Non-Claret Disjunctional) Dimer From D. Melanogaster
Length = 420
Score = 159 bits (402), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 114/331 (34%), Positives = 176/331 (53%), Gaps = 27/331 (8%)
Query: 22 IFVSVRLRPLNEKEIARNDVSDWECINDSTIIYRNNLSVAERSMYPTSYTFDRVFSCDCT 81
I V R+RP E E R W ++ST+ ++ + A+ M ++FD+VF +
Sbjct: 69 IRVFCRIRPPLESEENRM-CCTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQVFHPLSS 127
Query: 82 TRKVYEEGAKEVALAVVSGINSSVFAYGQTSSGKTYTM------IGITEYTMSDIYDYIE 135
++E + + A+ G N +FAYGQT SGKTYTM +G+ T+ ++D I
Sbjct: 128 QSDIFEMVSPLIQSAL-DGYNICIFAYGQTGSGKTYTMDGVPESVGVIPRTVDLLFDSIR 186
Query: 136 KHKER--EFVLKFSAMEIYNESVRDLLSADTSPL--RLLDDPERGTIVEKLTEETLKDWN 191
++ E+ +K + +EIYNE + DLLS + + R+ + + V +TEET+ D N
Sbjct: 187 GYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKNNKNDIYVSNITEETVLDPN 246
Query: 192 HLKELLSTCEAQRQIGETSLNETSSRSHQILRLTVESSACEFIGNDPSSL---TATVNFV 248
HL+ L+ T + R T+ NE SSRSH + +L E IG ++N V
Sbjct: 247 HLRHLMHTAKMNRATASTAGNERSSRSHAVTKL-------ELIGRHAEKQEISVGSINLV 299
Query: 249 DLAGSERASQALSAGTRLKEGCHINRSLLTLGTVIRKLSKGRNGHVPFRDSKLTRILQSS 308
DLAGSE TR+ E +INRSL L VI L + + H+P+R+SKLT +L S
Sbjct: 300 DLAGSESPK----TSTRMTETKNINRSLSELTNVILALLQ-KQDHIPYRNSKLTHLLMPS 354
Query: 309 LGGNARTAIICTLSPARSHVEQSRNTLLFAS 339
LGGN++T + +SP + ++S +L FA+
Sbjct: 355 LGGNSKTLMFINVSPFQDCFQESVKSLRFAA 385
>pdb|1CZ7|A Chain A, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|B Chain B, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|C Chain C, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|D Chain D, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
Length = 406
Score = 159 bits (402), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 114/331 (34%), Positives = 177/331 (53%), Gaps = 27/331 (8%)
Query: 22 IFVSVRLRPLNEKEIARNDVSDWECINDSTIIYRNNLSVAERSMYPTSYTFDRVFSCDCT 81
I V R+RP E E R W ++ST+ ++ + A+ M ++FD+VF +
Sbjct: 55 IRVFCRIRPPLESEENRM-CCTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQVFHPLSS 113
Query: 82 TRKVYEEGAKEVALAVVSGINSSVFAYGQTSSGKTYTM------IGITEYTMSDIYDYIE 135
++E + + A+ G N +FAYGQT SGKTYTM +G+ T+ ++D I
Sbjct: 114 QSDIFEMVSPLIQSAL-DGYNICIFAYGQTGSGKTYTMDGVPESVGVIPRTVDLLFDSIR 172
Query: 136 KHKER--EFVLKFSAMEIYNESVRDLLSADTSPL--RLLDDPERGTIVEKLTEETLKDWN 191
++ E+ +K + +EIYNE + DLLS + + R+ + + V +TEET+ D N
Sbjct: 173 GYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKNNKNDIYVSNITEETVLDPN 232
Query: 192 HLKELLSTCEAQRQIGETSLNETSSRSHQILRLTVESSACEFIGNDPSSL---TATVNFV 248
HL+ L+ T + R T+ NE SSRSH + +L E IG ++N V
Sbjct: 233 HLRHLMHTAKMNRATASTAGNERSSRSHAVTKL-------ELIGRHAEKQEISVGSINLV 285
Query: 249 DLAGSERASQALSAGTRLKEGCHINRSLLTLGTVIRKLSKGRNGHVPFRDSKLTRILQSS 308
DLAGSE + TR+ E +INRSL L VI L + + H+P+R+SKLT +L S
Sbjct: 286 DLAGSESPKTS----TRMTETKNINRSLSELTNVILALLQ-KQDHIPYRNSKLTHLLMPS 340
Query: 309 LGGNARTAIICTLSPARSHVEQSRNTLLFAS 339
LGGN++T + +SP + ++S +L FA+
Sbjct: 341 LGGNSKTLMFINVSPFQDCFQESVKSLRFAA 371
>pdb|3L1C|A Chain A, Kinesin-14 Protein Ncd, T436s Mutant
pdb|3L1C|B Chain B, Kinesin-14 Protein Ncd, T436s Mutant
Length = 383
Score = 157 bits (398), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 113/331 (34%), Positives = 176/331 (53%), Gaps = 27/331 (8%)
Query: 22 IFVSVRLRPLNEKEIARNDVSDWECINDSTIIYRNNLSVAERSMYPTSYTFDRVFSCDCT 81
I V R+RP E E R W ++ST+ ++ + A+ M ++FD+VF +
Sbjct: 58 IRVFCRIRPPLESEENRM-CCTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQVFHPLSS 116
Query: 82 TRKVYEEGAKEVALAVVSGINSSVFAYGQTSSGKTYTM------IGITEYTMSDIYDYIE 135
++E + + A+ G N +FAYGQ+ SGKTYTM +G+ T+ ++D I
Sbjct: 117 QSDIFEMVSPLIQSAL-DGYNICIFAYGQSGSGKTYTMDGVPESVGVIPRTVDLLFDSIR 175
Query: 136 KHKER--EFVLKFSAMEIYNESVRDLLSADTSPL--RLLDDPERGTIVEKLTEETLKDWN 191
++ E+ +K + +EIYNE + DLLS + + R+ + + V +TEET+ D N
Sbjct: 176 GYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKNNKNDIYVSNITEETVLDPN 235
Query: 192 HLKELLSTCEAQRQIGETSLNETSSRSHQILRLTVESSACEFIGNDPSSL---TATVNFV 248
HL+ L+ T + R T+ NE SSRSH + +L E IG ++N V
Sbjct: 236 HLRHLMHTAKMNRATASTAGNERSSRSHAVTKL-------ELIGRHAEKQEISVGSINLV 288
Query: 249 DLAGSERASQALSAGTRLKEGCHINRSLLTLGTVIRKLSKGRNGHVPFRDSKLTRILQSS 308
DLAGSE TR+ E +INRSL L VI L + + H+P+R+SKLT +L S
Sbjct: 289 DLAGSESPK----TSTRMTETKNINRSLSELTNVILALLQ-KQDHIPYRNSKLTHLLMPS 343
Query: 309 LGGNARTAIICTLSPARSHVEQSRNTLLFAS 339
LGGN++T + +SP + ++S +L FA+
Sbjct: 344 LGGNSKTLMFINVSPFQDCFQESVKSLRFAA 374
>pdb|1N6M|A Chain A, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL
Structure Of The Kinesin Motor Protein, Ncd
pdb|1N6M|B Chain B, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL
Structure Of The Kinesin Motor Protein, Ncd
Length = 409
Score = 157 bits (396), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 113/331 (34%), Positives = 176/331 (53%), Gaps = 27/331 (8%)
Query: 22 IFVSVRLRPLNEKEIARNDVSDWECINDSTIIYRNNLSVAERSMYPTSYTFDRVFSCDCT 81
I V R+RP E E R W ++ST+ ++ + A+ M ++FD+VF +
Sbjct: 58 IRVFCRIRPPLESEENRM-CCTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQVFHPLSS 116
Query: 82 TRKVYEEGAKEVALAVVSGINSSVFAYGQTSSGKTYTM------IGITEYTMSDIYDYIE 135
++E + + A+ G N +FAYGQT SGKTYTM +G+ T+ ++D I
Sbjct: 117 QSDIFEMVSPLIQSAL-DGYNICIFAYGQTGSGKTYTMDGVPESVGVIPRTVDLLFDSIR 175
Query: 136 KHKER--EFVLKFSAMEIYNESVRDLLSADTSPL--RLLDDPERGTIVEKLTEETLKDWN 191
++ E+ +K + +EIYNE + DLLS + + R+ + + V +TEET+ D N
Sbjct: 176 GYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKNNKNDIYVSNITEETVLDPN 235
Query: 192 HLKELLSTCEAQRQIGETSLNETSSRSHQILRLTVESSACEFIGNDPSSL---TATVNFV 248
HL+ L+ T + R T+ NE SSRSH + +L E IG ++N V
Sbjct: 236 HLRHLMHTAKMNRATASTAGNERSSRSHAVTKL-------ELIGRHAEKQEISVGSINLV 288
Query: 249 DLAGSERASQALSAGTRLKEGCHINRSLLTLGTVIRKLSKGRNGHVPFRDSKLTRILQSS 308
DLAGSE + TR+ E +I RSL L VI L + + H+P+R+SKLT +L S
Sbjct: 289 DLAGSESPKTS----TRMTETKNIKRSLSELTNVILALLQ-KQDHIPYRNSKLTHLLMPS 343
Query: 309 LGGNARTAIICTLSPARSHVEQSRNTLLFAS 339
LGGN++T + +SP + ++S +L FA+
Sbjct: 344 LGGNSKTLMFINVSPFQDCFQESVKSLRFAA 374
>pdb|4GKR|A Chain A, Structure Of The C-Terminal Motor Domain Of Kar3 From
Candida Glabrata
pdb|4GKR|B Chain B, Structure Of The C-Terminal Motor Domain Of Kar3 From
Candida Glabrata
Length = 371
Score = 155 bits (391), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 103/290 (35%), Positives = 158/290 (54%), Gaps = 25/290 (8%)
Query: 70 YTFDRVFSCDCTTRKVYEEGAKEVALAVVSGINSSVFAYGQTSSGKTYTMI----GITEY 125
+ FD++F T ++++E ++ + + G N +FAYGQT SGKTYTM+ GI
Sbjct: 76 FKFDKIFDQQETNDEIFKE-VGQLIQSSLDGYNVCIFAYGQTGSGKTYTMLNPGDGIVPA 134
Query: 126 TMSDIYDYIEKHKEREFVLKFSA--MEIYNESVRDLL------------SADTSPLRLLD 171
T++ I+ +I+K R + K S +EIYNE++ DLL +AD+ D
Sbjct: 135 TINHIFSWIDKLAARGWSYKVSCEFIEIYNENIVDLLRSGAPSQENNDRNADSKHEIRHD 194
Query: 172 DPERGTIVEKLTEETLKDWNHLKELLSTCEAQRQIGETSLNETSSRSHQILRLTVESSAC 231
+ T + +T L + + ++L R T+ NE SSRSH I + +E
Sbjct: 195 QELKTTYITNITTCVLDSRDTVDKVLKRANKLRSTASTAANEHSSRSHSIFIIHLEGKN- 253
Query: 232 EFIGNDPSSLTATVNFVDLAGSERASQALSAGTRLKEGCHINRSLLTLGTVIRKLSK--G 289
E G + +N VDLAGSER + ++ G RL+E IN+SL LG VI L+ G
Sbjct: 254 EGTGEKSQGI---LNLVDLAGSERLNSSMVVGERLRETQSINKSLSCLGDVIHALNSPDG 310
Query: 290 RNGHVPFRDSKLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLLFAS 339
+ H+PFR+SKLT +LQ SL G+++T + +SPA H+ ++ N+L FAS
Sbjct: 311 QKRHIPFRNSKLTYLLQYSLIGSSKTLMFVNISPAALHLNETINSLRFAS 360
>pdb|3BFN|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 22
Length = 388
Score = 153 bits (387), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 117/367 (31%), Positives = 179/367 (48%), Gaps = 28/367 (7%)
Query: 17 GCPERIFVSVRLRPLNEKEIARNDVSDWECIN--DSTIIYRNNLSVAERSMYPTSYTFDR 74
G P R+ V+VRLRP + SD C+ DS + N + ++ Y FD
Sbjct: 18 GPPARVRVAVRLRPFVDGTAG---ASDPPCVRGMDSCSLEIANWRNHQETL---KYQFDA 71
Query: 75 VFSCDCTTRKVYEEGAKEVALAVVSGINSSVFAYGQTSSGKTYTMIGITE---YTMSDIY 131
+ T + +Y + + ++ G N+SV AYG T +GKT+TM+G E +
Sbjct: 72 FYGERSTQQDIYAGSVQPILRHLLEGQNASVLAYGPTGAGKTHTMLGSPEQPGVIPRALM 131
Query: 132 DYIEKHKE-----REFVLK--FSAMEIYNESVRDLLSADTSPLRLLDDPERGTIVEKLTE 184
D ++ +E R + L S +EIY E V DLL + L + +D ++ L++
Sbjct: 132 DLLQLTREEGAEGRPWALSVTMSYLEIYQEKVLDLLDPASGDLVIREDCRGNILIPGLSQ 191
Query: 185 ETLKDWNHLKELLSTCEAQRQIGETSLNETSSRSHQILRLTVESS--ACEFIGNDPSSLT 242
+ + + + R +G T LN+ SSRSH +L + V+ F +
Sbjct: 192 KPISSFADFERHFLPASRNRTVGATRLNQRSSRSHAVLLVKVDQRERLAPFRQRE----- 246
Query: 243 ATVNFVDLAGSERASQALSAGTRLKEGCHINRSLLTLGTVIRKLSKGRNGHVPFRDSKLT 302
+ +DLAGSE + + G RLKE IN SL LG V+ L++G VP+RDSKLT
Sbjct: 247 GKLYLIDLAGSEDNRRTGNKGLRLKESGAINTSLFVLGKVVDALNQGLP-RVPYRDSKLT 305
Query: 303 RILQSSLGGNARTAIICTLSPARSHVEQSRNTLLFASCAKEVTTNAQVNIVMSDKAL--V 360
R+LQ SLGG+A + +I ++P R + + L FA+ +KEV N + AL V
Sbjct: 306 RLLQDSLGGSAHSILIANIAPERRFYLDTVSALNFAARSKEVINRPFTNESLQPHALGPV 365
Query: 361 KHLQREL 367
K Q+EL
Sbjct: 366 KLSQKEL 372
>pdb|3NWN|A Chain A, Crystal Structure Of The Human Kif9 Motor Domain In
Complex With Adp
Length = 359
Score = 151 bits (382), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 97/291 (33%), Positives = 151/291 (51%), Gaps = 19/291 (6%)
Query: 69 SYTFDRVFSCDCTTRKVYEEGAKEVALAVVSGINSSVFAYGQTSSGKTYTMIGITE---- 124
S+ D V D + VYE AK+V + G N ++ YGQT +GKTYTM+G TE
Sbjct: 73 SFKLDGVLH-DASQDLVYETVAKDVVSQALDGYNGTIMCYGQTGAGKTYTMMGATENYKH 131
Query: 125 -----YTMSDIYDYIEKHKEREFVLKFSAMEIYNESVRDLLSA------DTSPLRLLDDP 173
+ ++ IE+ ++ S +EIYNES+ DLLS +P+ ++++P
Sbjct: 132 RGILPRALQQVFRMIEERPTHAITVRVSYLEIYNESLFDLLSTLPYVGPSVTPMTIVENP 191
Query: 174 ERGTIVEKLTEETLKDWNHLKELLSTCEAQRQIGETSLNETSSRSHQILRLTVESSACEF 233
+ G ++ L+ LL E R I ++N+ SSRSH I + +E+ +
Sbjct: 192 Q-GVFIKGLSVHLTSQEEDAFSLLFEGETNRIIASHTMNKNSSRSHCIFTIYLEAHSRTL 250
Query: 234 IGNDPSSLTATVNFVDLAGSERASQALSAGTRLKEGCHINRSLLTLGTVIRKLSKGRNGH 293
++ +T+ +N VDLAGSER ++ S G LKE +IN+SL L I L + H
Sbjct: 251 --SEEKYITSKINLVDLAGSERLGKSGSEGQVLKEATYINKSLSFLEQAIIALGDQKRDH 308
Query: 294 VPFRDSKLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLLFASCAKEV 344
+PFR KLT L+ SLGGN ++ + + +E++ ++L FAS K V
Sbjct: 309 IPFRQCKLTHALKDSLGGNCNMVLVTNIYGEAAQLEETLSSLRFASRMKLV 359
>pdb|4ETP|A Chain A, C-Terminal Motor And Motor Homology Domain Of Kar3vik1
Fused To A Synthetic Heterodimeric Coiled Coil
Length = 403
Score = 151 bits (381), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 114/347 (32%), Positives = 179/347 (51%), Gaps = 44/347 (12%)
Query: 22 IFVSVRLRP-LNEKEIARNDVSDWECINDSTIIYRNNLSVAERSMYPTSYTFDRVFSCDC 80
I V +R+RP L E + + + +D++ + ++ + + + FD++F
Sbjct: 61 IRVYLRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIFDQQD 120
Query: 81 TTRKVYEEGAKEVALAVVSGINSSVFAYGQTSSGKTYTMI----GITEYTMSDIYDYIEK 136
T V++E + V + + G N ++FAYGQT SGKT+TM+ GI T+S I+++I K
Sbjct: 121 TNVDVFKEVGQLVQ-SSLDGYNVAIFAYGQTGSGKTFTMLNPGDGIIPSTISHIFNWINK 179
Query: 137 HKEREFVLKFSA--MEIYNESVRDLLSADTS---------PLRLLDDPERGTIV------ 179
K + + K +A +EIYNE++ DLL +D + + D E T
Sbjct: 180 LKTKGWDYKVNAEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIRHDQETKTTTITNVTS 239
Query: 180 -----EKLTEETLKDWNHLKELLSTCEAQRQIGETSLNETSSRSHQILRLTVESSACEFI 234
E++ E LK N L+ ST NE SSRSH I + + S +
Sbjct: 240 VKLESEEMVEIILKKANKLRSTASTAS----------NEHSSRSHSIFIIHLSGSNAK-- 287
Query: 235 GNDPSSLTATVNFVDLAGSERASQALSAGTRLKEGCHINRSLLTLGTVIRKLSK--GRNG 292
+ T+N VDLAGSER + + G RL+E +IN+SL LG VI L +
Sbjct: 288 --TGAHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSALGDVIHALGQPDSTKR 345
Query: 293 HVPFRDSKLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLLFAS 339
H+PFR+SKLT +LQ SL G+++T + +SP+ SH+ ++ N+L FAS
Sbjct: 346 HIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFAS 392
>pdb|4H1G|A Chain A, Structure Of Candida Albicans Kar3 Motor Domain Fused To
Maltose- Binding Protein
Length = 715
Score = 149 bits (377), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 98/285 (34%), Positives = 155/285 (54%), Gaps = 25/285 (8%)
Query: 70 YTFDRVFSCDCTTRKVYEEGAKEVALAVVSGINSSVFAYGQTSSGKTYTMI----GITEY 125
+ FD++F + + V+EE ++ + ++ G N VFAYGQT SGKT+TM G+
Sbjct: 432 FLFDKIFEREQSNDLVFEELSQLIQCSL-DGTNVCVFAYGQTGSGKTFTMSHPTNGMIPL 490
Query: 126 TMSDIYDYIEKHKER--EFVLKFSAMEIYNESVRDLLSADTSPLRLL----DDPERGTIV 179
++ I++ IE+ KE+ + ++ +EIYNE++ DLL+ P DD T V
Sbjct: 491 SLKKIFNDIEELKEKGWSYTVRGKFIEIYNEAIVDLLNPKIDPNTKYEIKHDDIAGKTTV 550
Query: 180 EKLTEETLKDWNHLKELLSTCEAQRQIGETSLNETSSRSHQILRLTVESSACEFIGNDPS 239
++ +K +L+ +R T N+ SSRSH I + ++ +
Sbjct: 551 TNVSTIDIKSPEQAITILNQANKKRSTAATKSNDHSSRSHSIFIIDLQGY---------N 601
Query: 240 SLT-----ATVNFVDLAGSERASQALSAGTRLKEGCHINRSLLTLGTVIRKLSKGRNGHV 294
SLT T+N +DLAGSER + + + G RLKE IN+SL LG VI L+ HV
Sbjct: 602 SLTKESSYGTLNLIDLAGSERLNNSRAEGDRLKETQAINKSLSCLGDVIHSLNLKDGSHV 661
Query: 295 PFRDSKLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLLFAS 339
P+R+SKLT +L+ SLGGN++T + +SP + ++ N+L FA+
Sbjct: 662 PYRNSKLTYLLKHSLGGNSKTLMFVNISPLTKDLNETINSLRFAT 706
>pdb|3T0Q|A Chain A, Motor Domain Structure Of The Kar3-Like Kinesin From
Ashbya Gossypii
Length = 349
Score = 146 bits (369), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 95/291 (32%), Positives = 154/291 (52%), Gaps = 25/291 (8%)
Query: 69 SYTFDRVFSCDCTTRKVYEEGAKEVALAVVSGINSSVFAYGQTSSGKTYTMI----GITE 124
++ FD +F T ++++EE +++ + + G N +FAYGQT SGKTYTM+ G+
Sbjct: 54 NFQFDMIFEPSHTNKEIFEE-IRQLVQSSLDGYNVCIFAYGQTGSGKTYTMLNAGDGMIP 112
Query: 125 YTMSDIYDYIEKHKER--EFVLKFSAMEIYNESVRDLLS-----------ADTSPLRLLD 171
T+S I+ + KER + ++ +EIYNE++ DLL D+ +
Sbjct: 113 MTLSHIFKWTANLKERGWNYEMECEYIEIYNETILDLLRDFKSHDNIDEILDSQKHDIRH 172
Query: 172 DPER-GTIVEKLTEETLKDWNHLKELLSTCEAQRQIGETSLNETSSRSHQILRLTVESSA 230
D E+ GT + +T + + + +L R T NE SSRSH + + +
Sbjct: 173 DHEKQGTYITNVTRMKMTSTSQVDTILKKASKMRSTAATRSNERSSRSHSVFMVHINGRN 232
Query: 231 CEFIGNDPSSLTATVNFVDLAGSERASQALSAGTRLKEGCHINRSLLTLGTVIRKLSKGR 290
+ + +N VDLAGSER + + G RL+E +IN+SL LG VI L+
Sbjct: 233 L----HTGETSQGKLNLVDLAGSERINSSAVTGERLRETQNINKSLSCLGDVIYALNTPD 288
Query: 291 NG--HVPFRDSKLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLLFAS 339
G ++PFR+SKLT +LQ SL G+++T + + P +H+ ++ N+L FAS
Sbjct: 289 AGKRYIPFRNSKLTYLLQYSLVGDSKTLMFVNIPPDPNHISETLNSLRFAS 339
>pdb|2GRY|A Chain A, Crystal Structure Of The Human Kif2 Motor Domain In
Complex With Adp
Length = 420
Score = 146 bits (369), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 119/345 (34%), Positives = 174/345 (50%), Gaps = 35/345 (10%)
Query: 21 RIFVSVRLRPLNEKEIARNDVSDWECI--NDSTIIYRNNLSV-AERSMYPTSYTFDRVFS 77
RI V VR RPLN+KE D+ D I D +++ V R + ++ FD F
Sbjct: 90 RICVCVRKRPLNKKETQMKDL-DVITIPSKDVVMVHEPKQKVDLTRYLENQTFRFDYAFD 148
Query: 78 CDCTTRKVYEEGAKEVALAVVSGINSSVFAYGQTSSGKTYTM------------IGITEY 125
VY A+ + + ++ FAYGQT SGKT+TM GI
Sbjct: 149 DSAPNEMVYRFTARPLVETIFERGMATCFAYGQTGSGKTHTMGGDFSGKNQDCSKGIYAL 208
Query: 126 TMSDIYDYIEK--HKEREFVLKFSAMEIYNESVRDLLSADTSPLRLLDDPERGTIVEKLT 183
D++ ++K +K+ E + + EIY+ V DLL+ T LR+L+D ++ V L
Sbjct: 209 AARDVFLMLKKPNYKKLELQVYATFFEIYSGKVFDLLNRKTK-LRVLEDGKQQVQVVGLQ 267
Query: 184 EETLKDWNHLKELLSTCEAQRQIGETSLNETSSRSHQILRLTVESSACEFIGNDPSSLTA 243
E +K + +L+ + R G+TS N SSRSH + ++ + L
Sbjct: 268 EREVKCVEDVLKLIDIGNSCRTSGQTSANAHSSRSHAVFQIILRRKG---------KLHG 318
Query: 244 TVNFVDLAGSERASQALSAG--TRLKEGCHINRSLLTLGTVIRKLSKGRNG-HVPFRDSK 300
+ +DLAG+ER + SA TRL EG IN+SLL L IR L GRN H PFR SK
Sbjct: 319 KFSLIDLAGNERGADTSSADRQTRL-EGAEINKSLLALKECIRAL--GRNKPHTPFRASK 375
Query: 301 LTRILQSS-LGGNARTAIICTLSPARSHVEQSRNTLLFASCAKEV 344
LT++L+ S +G N+RT +I T+SP + E + NTL +A+ KE+
Sbjct: 376 LTQVLRDSFIGENSRTCMIATISPGMASCENTLNTLRYANRVKEL 420
>pdb|3KAR|A Chain A, The Motor Domain Of Kinesin-Like Protein Kar3, A
Saccharomyces Cerevisiae Kinesin-Related Protein
Length = 346
Score = 146 bits (368), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 104/298 (34%), Positives = 156/298 (52%), Gaps = 43/298 (14%)
Query: 70 YTFDRVFSCDCTTRKVYEEGAKEVALAVVSGINSSVFAYGQTSSGKTYTMI----GITEY 125
+ FD++F T V++E ++ + + G N +FAYGQT SGKT+TM+ GI
Sbjct: 53 FKFDKIFDQQDTNVDVFKE-VGQLVQSSLDGYNVCIFAYGQTGSGKTFTMLNPGDGIIPS 111
Query: 126 TMSDIYDYIEKHKEREFVLKFSA--MEIYNESVRDLLSADTS---------PLRLLDDPE 174
T+S I+++I K K + + K + +EIYNE++ DLL +D + + D E
Sbjct: 112 TISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIRHDQE 171
Query: 175 RGTIV-----------EKLTEETLKDWNHLKELLSTCEAQRQIGETSLNETSSRSHQILR 223
T E++ E LK N L R T+ NE SSRSH I
Sbjct: 172 TKTTTITNVTSCKLESEEMVEIILKKANKL----------RSTASTASNEHSSRSHSIFI 221
Query: 224 LTVESSACEFIGNDPSSLTATVNFVDLAGSERASQALSAGTRLKEGCHINRSLLTLGTVI 283
+ + S + + T+N VDLAGSER + + G RL+E +IN+SL LG VI
Sbjct: 222 IHLSGSNAK----TGAHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVI 277
Query: 284 RKLSK--GRNGHVPFRDSKLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLLFAS 339
L + H+PFR+SKLT +LQ SL G+++T + +SP+ SH+ ++ N+L FAS
Sbjct: 278 HALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFAS 335
>pdb|1F9T|A Chain A, Crystal Structures Of Kinesin Mutants Reveal A Signalling
Pathway For Activation Of The Motor Atpase
Length = 358
Score = 145 bits (367), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 105/298 (35%), Positives = 156/298 (52%), Gaps = 43/298 (14%)
Query: 70 YTFDRVFSCDCTTRKVYEEGAKEVALAVVSGINSSVFAYGQTSSGKTYTMI----GITEY 125
+ FD++F T V++E + V + + G N +FAYGQT SGKT+TM+ GI
Sbjct: 65 FKFDKIFDQQDTNVDVFKEVGQLVQ-SSLDGYNVCIFAYGQTGSGKTFTMLNPGDGIIPS 123
Query: 126 TMSDIYDYIEKHKEREFVLKFSA--MEIYNESVRDLLSADTS---------PLRLLDDPE 174
T+S I+++I K K + + K + +EIYNE++ DLL +D + + D E
Sbjct: 124 TISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIRHDQE 183
Query: 175 RGTIV-----------EKLTEETLKDWNHLKELLSTCEAQRQIGETSLNETSSRSHQILR 223
T E++ E LK N L R T+ NE SSRSH I
Sbjct: 184 TKTTTITNVTSCKLESEEMVEIILKKANKL----------RSTASTASNEHSSRSHSIFI 233
Query: 224 LTVESSACEFIGNDPSSLTATVNFVDLAGSERASQALSAGTRLKEGCHINRSLLTLGTVI 283
+ + S + + T+N VDLAGSER + + G RL+E +IN+SL LG VI
Sbjct: 234 IHLSGSNAK----TGAHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVI 289
Query: 284 RKLSK--GRNGHVPFRDSKLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLLFAS 339
L + H+PFR+SKLT +LQ SL G+++T + +SP+ SH+ ++ N+L FAS
Sbjct: 290 HALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFAS 347
>pdb|1F9W|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
pdb|1F9W|B Chain B, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 144 bits (362), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 103/298 (34%), Positives = 155/298 (52%), Gaps = 43/298 (14%)
Query: 70 YTFDRVFSCDCTTRKVYEEGAKEVALAVVSGINSSVFAYGQTSSGKTYTMI----GITEY 125
+ FD++F T V++E ++ + + G N +FAYGQT SGKT+TM+ GI
Sbjct: 54 FKFDKIFDQQDTNVDVFKE-VGQLVQSSLDGYNVCIFAYGQTGSGKTFTMLNPGDGIIPS 112
Query: 126 TMSDIYDYIEKHKEREFVLKFSA--MEIYNESVRDLLSADTS---------PLRLLDDPE 174
T+S I+++I K K + + K + +EIYNE++ DLL +D + + D E
Sbjct: 113 TISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIRHDQE 172
Query: 175 RGTIV-----------EKLTEETLKDWNHLKELLSTCEAQRQIGETSLNETSSRSHQILR 223
T E++ E LK N L R T+ NE SSRSH I
Sbjct: 173 TKTTTITNVTSCKLESEEMVEIILKKANKL----------RSTASTASNEHSSRSHSIFI 222
Query: 224 LTVESSACEFIGNDPSSLTATVNFVDLAGSERASQALSAGTRLKEGCHINRSLLTLGTVI 283
+ + S + + T+N VDLAGS R + + G RL+E +IN+SL LG VI
Sbjct: 223 IHLSGSNAK----TGAHSYGTLNLVDLAGSARINVSQVVGDRLRETQNINKSLSCLGDVI 278
Query: 284 RKLSK--GRNGHVPFRDSKLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLLFAS 339
L + H+PFR+SKLT +LQ SL G+++T + +SP+ SH+ ++ N+L FAS
Sbjct: 279 HALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFAS 336
>pdb|1F9U|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 143 bits (361), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 103/298 (34%), Positives = 155/298 (52%), Gaps = 43/298 (14%)
Query: 70 YTFDRVFSCDCTTRKVYEEGAKEVALAVVSGINSSVFAYGQTSSGKTYTMI----GITEY 125
+ FD++F T V++E ++ + + G N +FAYGQT SGKT+TM+ GI
Sbjct: 54 FKFDKIFDQQDTNVDVFKE-VGQLVQSSLDGYNVCIFAYGQTGSGKTFTMLNPGDGIIPS 112
Query: 126 TMSDIYDYIEKHKEREFVLKFSA--MEIYNESVRDLLSADTS---------PLRLLDDPE 174
T+S I+++I K K + + K + +EIYNE++ DLL +D + + D E
Sbjct: 113 TISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIRHDQE 172
Query: 175 RGTIV-----------EKLTEETLKDWNHLKELLSTCEAQRQIGETSLNETSSRSHQILR 223
T E++ E LK N L R T+ NE SSRSH I
Sbjct: 173 TKTTTITNVTSCKLESEEMVEIILKKANKL----------RSTASTASNEHSSRSHSIFI 222
Query: 224 LTVESSACEFIGNDPSSLTATVNFVDLAGSERASQALSAGTRLKEGCHINRSLLTLGTVI 283
+ + S + + T+N VDLAGSER + + G RL+E +I +SL LG VI
Sbjct: 223 IHLSGSNAK----TGAHSYGTLNLVDLAGSERINVSQVVGDRLRETQNIKKSLSCLGDVI 278
Query: 284 RKLSK--GRNGHVPFRDSKLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLLFAS 339
L + H+PFR+SKLT +LQ SL G+++T + +SP+ SH+ ++ N+L FAS
Sbjct: 279 HALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFAS 336
>pdb|1F9V|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 143 bits (361), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 103/298 (34%), Positives = 155/298 (52%), Gaps = 43/298 (14%)
Query: 70 YTFDRVFSCDCTTRKVYEEGAKEVALAVVSGINSSVFAYGQTSSGKTYTMI----GITEY 125
+ FD++F T V++E ++ + + G N +FAYGQT SGKT+TM+ GI
Sbjct: 54 FKFDKIFDQQDTNVDVFKE-VGQLVQSSLDGYNVCIFAYGQTGSGKTFTMLNPGDGIIPS 112
Query: 126 TMSDIYDYIEKHKEREFVLKFSA--MEIYNESVRDLLSADTS---------PLRLLDDPE 174
T+S I+++I K K + + K + +EIYNE++ DLL +D + + D E
Sbjct: 113 TISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIRHDQE 172
Query: 175 RGTIV-----------EKLTEETLKDWNHLKELLSTCEAQRQIGETSLNETSSRSHQILR 223
T E++ E LK N L R T+ NE SS SH I
Sbjct: 173 TKTTTITNVTSCKLESEEMVEIILKKANKL----------RSTASTASNEHSSASHSIFI 222
Query: 224 LTVESSACEFIGNDPSSLTATVNFVDLAGSERASQALSAGTRLKEGCHINRSLLTLGTVI 283
+ + S + + T+N VDLAGSER + + G RL+E +IN+SL LG VI
Sbjct: 223 IHLSGSNAK----TGAHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVI 278
Query: 284 RKLSK--GRNGHVPFRDSKLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLLFAS 339
L + H+PFR+SKLT +LQ SL G+++T + +SP+ SH+ ++ N+L FAS
Sbjct: 279 HALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFAS 336
>pdb|2HEH|A Chain A, Crystal Structure Of The Kif2c Motor Domain (Casp Target)
Length = 387
Score = 143 bits (360), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 111/348 (31%), Positives = 175/348 (50%), Gaps = 37/348 (10%)
Query: 20 ERIFVSVRLRPLNEKEIARNDVS----DWECINDSTIIYRNNLSV-AERSMYPTSYTFDR 74
RI V VR RPLN++E+A+ ++ +C+ +++ L V + + ++ FD
Sbjct: 51 HRICVCVRKRPLNKQELAKKEIDVISIPSKCL---LLVHEPKLKVDLTKYLENQAFCFDF 107
Query: 75 VFSCDCTTRKVYEEGAKEVALAVVSGINSSVFAYGQTSSGKTYTMIGITEYTMSDIYDYI 134
F + VY A+ + + G ++ FAYGQT SGKT+TM G + I
Sbjct: 108 AFDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKAQNASKGI 167
Query: 135 EKHKERE-FVLK-------------FSAMEIYNESVRDLLSADTSPLRLLDDPERGTIVE 180
R+ F+LK + EIYN + DLL+ + LR+L+D ++ V
Sbjct: 168 YAMASRDVFLLKNQPCYRKLGLEVYVTFFEIYNGKLFDLLN-KKAKLRVLEDGKQQVQVV 226
Query: 181 KLTEETLKDWNHLKELLSTCEAQRQIGETSLNETSSRSHQILRLTVESSACEFIGNDPSS 240
L E + + + +++ A R G+T N SSRSH ++ + +
Sbjct: 227 GLQEHLVNSADDVIKMIDMGSACRTSGQTFANSNSSRSHACFQIILRAKG---------R 277
Query: 241 LTATVNFVDLAGSERASQALSAG--TRLKEGCHINRSLLTLGTVIRKLSKGRNGHVPFRD 298
+ + VDLAG+ER + SA TR+ EG IN+SLL L IR L + + H PFR+
Sbjct: 278 MHGKFSLVDLAGNERGADTSSADRQTRM-EGAEINKSLLALKECIRALGQNK-AHTPFRE 335
Query: 299 SKLTRILQSS-LGGNARTAIICTLSPARSHVEQSRNTLLFASCAKEVT 345
SKLT++L+ S +G N+RT +I T+SP S E + NTL +A KE++
Sbjct: 336 SKLTQVLRDSFIGENSRTCMIATISPGISSCEYTLNTLRYADRVKELS 383
>pdb|1V8J|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of
The Microtubule Destabilizer Kif2c Complexed With Mg-adp
pdb|1V8K|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of
The Microtubule Destabilizer Kif2c Complexed With
Mg-Amppnp
Length = 410
Score = 142 bits (357), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 111/347 (31%), Positives = 175/347 (50%), Gaps = 37/347 (10%)
Query: 21 RIFVSVRLRPLNEKEIARNDVSDW----ECINDSTIIYRNNLSV-AERSMYPTSYTFDRV 75
RI V VR RPLN++E+A+ ++ +C+ +++ L V + + ++ FD
Sbjct: 72 RICVCVRKRPLNKQELAKKEIDVISVPSKCL---LLVHEPKLKVDLTKYLENQAFCFDFA 128
Query: 76 FSCDCTTRKVYEEGAKEVALAVVSGINSSVFAYGQTSSGKTYTM------------IGIT 123
F + VY A+ + + G ++ FAYGQT SGKT+TM GI
Sbjct: 129 FDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKSQNASKGIY 188
Query: 124 EYTMSDIYDYIEKHKEREFVLK--FSAMEIYNESVRDLLSADTSPLRLLDDPERGTIVEK 181
D++ + + R L+ + EIYN V DLL+ + LR+L+D + V
Sbjct: 189 AMASRDVFLLKNQPRYRNLNLEVYVTFFEIYNGKVFDLLN-KKAKLRVLEDSRQQVQVVG 247
Query: 182 LTEETLKDWNHLKELLSTCEAQRQIGETSLNETSSRSHQILRLTVESSACEFIGNDPSSL 241
L E + + + ++++ A R G+T N SSRSH ++ + + L
Sbjct: 248 LQEYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILLRTKG---------RL 298
Query: 242 TATVNFVDLAGSERASQALSAG--TRLKEGCHINRSLLTLGTVIRKLSKGRNGHVPFRDS 299
+ VDLAG+ER + SA TR+ EG IN+SLL L IR L + + H PFR+S
Sbjct: 299 HGKFSLVDLAGNERGADTSSADRQTRM-EGAEINKSLLALKECIRALGQNK-AHTPFRES 356
Query: 300 KLTRILQSS-LGGNARTAIICTLSPARSHVEQSRNTLLFASCAKEVT 345
KLT++L+ S +G N+RT +I +SP S E + NTL +A KE++
Sbjct: 357 KLTQVLRDSFIGENSRTCMIAMISPGISSCEYTLNTLRYADRVKELS 403
>pdb|3EDL|D Chain D, Kinesin13-Microtubule Ring Complex
Length = 331
Score = 138 bits (348), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 110/346 (31%), Positives = 174/346 (50%), Gaps = 37/346 (10%)
Query: 22 IFVSVRLRPLNEKEIARNDVSDW----ECINDSTIIYRNNLSV-AERSMYPTSYTFDRVF 76
I V VR RPLN++E+A+ ++ +C+ +++ L V + + ++ FD F
Sbjct: 1 ICVCVRKRPLNKQELAKKEIDVISVPSKCL---LLVHEPKLKVDLTKYLENQAFCFDFAF 57
Query: 77 SCDCTTRKVYEEGAKEVALAVVSGINSSVFAYGQTSSGKTYTM------------IGITE 124
+ VY A+ + + G ++ FAYGQT SGKT+TM GI
Sbjct: 58 DETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKSQNASKGIYA 117
Query: 125 YTMSDIYDYIEKHKEREFVLK--FSAMEIYNESVRDLLSADTSPLRLLDDPERGTIVEKL 182
D++ + + R L+ + EIYN V DLL+ + LR+L+D + V L
Sbjct: 118 MASRDVFLLKNQPRYRNLNLEVYVTFFEIYNGKVFDLLN-KKAKLRVLEDSRQQVQVVGL 176
Query: 183 TEETLKDWNHLKELLSTCEAQRQIGETSLNETSSRSHQILRLTVESSACEFIGNDPSSLT 242
E + + + ++++ A R G+T N SSRSH ++ + + L
Sbjct: 177 QEYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILLRTKG---------RLH 227
Query: 243 ATVNFVDLAGSERASQALSAG--TRLKEGCHINRSLLTLGTVIRKLSKGRNGHVPFRDSK 300
+ VDLAG+ER + SA TR+ EG IN+SLL L IR L + + H PFR+SK
Sbjct: 228 GKFSLVDLAGNERGADTSSADRQTRM-EGAEINKSLLALKECIRALGQNK-AHTPFRESK 285
Query: 301 LTRILQSS-LGGNARTAIICTLSPARSHVEQSRNTLLFASCAKEVT 345
LT++L+ S +G N+RT +I +SP S E + NTL +A KE++
Sbjct: 286 LTQVLRDSFIGENSRTCMIAMISPGISSCEYTLNTLRYADRVKELS 331
>pdb|1RY6|A Chain A, Crystal Structure Of Internal Kinesin Motor Domain
Length = 360
Score = 136 bits (342), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 110/339 (32%), Positives = 172/339 (50%), Gaps = 29/339 (8%)
Query: 22 IFVSVRLRPLNEKEIARNDVSDWECINDSTIIYRNNLSVAERSMYPTSYTF--DRVFSCD 79
I V VR RPL+E E + D N+ T+ + + Y + F D+VF
Sbjct: 2 IKVVVRKRPLSELEKKKKDSDIITVKNNCTLYIDEPRYKVDMTKYIERHEFIVDKVFDDT 61
Query: 80 CTTRKVYEEGAKEVALAVV-SGINSSVFAYGQTSSGKTYTMIG-----------ITEYTM 127
VYE K + + + +G S FAYGQT SGKTYTM+G I +Y
Sbjct: 62 VDNFTVYENTIKPLIIDLYENGCVCSCFAYGQTGSGKTYTMLGSQPYGQSDTPGIFQYAA 121
Query: 128 SDIYDYIEKH-KEREFVLKFSAMEIYNESVRDLLSADTSPLRLLDDPERGTIVEKLTEET 186
DI+ ++ + K+ + S EIY + DLL + L++ ++ +V+ L +
Sbjct: 122 GDIFTFLNIYDKDNTKGIFISFYEIYCGKLYDLLQK-RKMVAALENGKKEVVVKDL--KI 178
Query: 187 LKDWNHLKELLSTCEA--QRQIGETSLNETSSRSHQILRLTVESSACEFIGNDPSSLTAT 244
L+ + +L + R+IG S N+ SSRSH IL + ++ N +SL
Sbjct: 179 LRVLTKEELILKMIDGVLLRKIGVNSQNDESSRSHAILNIDLKDI------NKNTSL-GK 231
Query: 245 VNFVDLAGSERASQALSAGTRLK-EGCHINRSLLTLGTVIRKLSKGRNGHVPFRDSKLTR 303
+ F+DLAGSER + +S + + +G +INRSLL L IR + +N H+PFRDS+LT+
Sbjct: 232 IAFIDLAGSERGADTVSQNKQTQTDGANINRSLLALKECIRAMDSDKN-HIPFRDSELTK 290
Query: 304 ILQSSLGGNARTAIICTLSPARSHVEQSRNTLLFASCAK 342
+L+ G +++ +I +SP S EQ+ NTL ++S K
Sbjct: 291 VLRDIFVGKSKSIMIANISPTISCCEQTLNTLRYSSRVK 329
>pdb|2REP|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member C1
Length = 376
Score = 135 bits (341), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 112/310 (36%), Positives = 155/310 (50%), Gaps = 33/310 (10%)
Query: 55 RNNLSVAERSMYPTSYTFDRVFSCDCTTRKVYEEGAKEVALAVVSGINSSVFAYGQTSSG 114
R LS A ++FDRVF +V+EE A V A+ G +FAYGQT SG
Sbjct: 70 RGTLSGAPAPPPRHDFSFDRVFPPGSGQDEVFEEIAMLVQSAL-DGYPVCIFAYGQTGSG 128
Query: 115 KTYTMIG----------ITEYTMSDIYDYIEKHKEREFVLKFSA--MEIYNESVRDLLSA 162
KT+TM G + + ++ ++ + + F A +EIYNE+VRDLL+
Sbjct: 129 KTFTMEGGPGGDPQLEGLIPRALRHLFSVAQELSGQGWTYSFVASYVEIYNETVRDLLAT 188
Query: 163 DTSPLRLLDDPER--GTIVEKLTEETLKDW-----NHLKELLSTCEAQRQIGETSLNETS 215
T + + R G E+LT + + LL R + T+ NE S
Sbjct: 189 GTRKGQGGECEIRRAGPGSEELTVTNARYVPVSCEKEVDALLHLARQNRAVARTAQNERS 248
Query: 216 SRSHQILRLTV--ESSACEFIGNDPSSLTATVNFVDLAGSERASQALSAGT----RLKEG 269
SRSH + +L + E S+ P SL VDLAGSER L+ G RL+E
Sbjct: 249 SRSHSVFQLQISGEHSSRGLQCGAPLSL------VDLAGSERLDPGLALGPGERERLRET 302
Query: 270 CHINRSLLTLGTVIRKLSKGRNGHVPFRDSKLTRILQSSLGGNARTAIICTLSPARSHVE 329
IN SL TLG VI LS + HVP+R+SKLT +LQ+SLGG+A+ + +SP +V
Sbjct: 303 QAINSSLSTLGLVIMALSN-KESHVPYRNSKLTYLLQNSLGGSAKMLMFVNISPLEENVS 361
Query: 330 QSRNTLLFAS 339
+S N+L FAS
Sbjct: 362 ESLNSLRFAS 371
>pdb|2KIN|A Chain A, Kinesin (Monomeric) From Rattus Norvegicus
pdb|3KIN|A Chain A, Kinesin (Dimeric) From Rattus Norvegicus
pdb|3KIN|C Chain C, Kinesin (Dimeric) From Rattus Norvegicus
Length = 238
Score = 126 bits (317), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 83/245 (33%), Positives = 120/245 (48%), Gaps = 24/245 (9%)
Query: 22 IFVSVRLRPLNEKEIARNDVSDWECINDSTIIYRNNLSVAERSMYPTSYTFDRVFSCDCT 81
I V R RPLNE EI R D + + T++ Y FDRV + T
Sbjct: 8 IKVMCRFRPLNEAEILRGDKFIPKFKGEETVVIGQG----------KPYVFDRVLPPNTT 57
Query: 82 TRKVYEEGAKEVALAVVSGINSSVFAYGQTSSGKTYTM---------IGITEYTMSDIYD 132
+VY AK++ V+ G N ++FAYGQTSSGKT+TM +GI DI+D
Sbjct: 58 QEQVYNACAKQIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPQLMGIIPRIAHDIFD 117
Query: 133 YIEKHKER-EFVLKFSAMEIYNESVRDLLSADTSPLRLLDDPERGTIVEKLTEETLKDWN 191
+I E EF +K S EIY + +RDLL + L + +D R V+ TE +
Sbjct: 118 HIYSMDENLEFHIKVSYFEIYLDKIRDLLDVSKTNLAVHEDKNRVPYVKGCTERFVSSPE 177
Query: 192 HLKELLSTCEAQRQIGETSLNETSSRSHQILRLTVESSACEFIGNDPSSLTATVNFVDLA 251
+ +++ +A R + T++NE SSRSH I + ++ E L+ + VDLA
Sbjct: 178 EVMDVIDEGKANRHVAVTNMNEHSSRSHSIFLINIKQENVE----TEKKLSGKLYLVDLA 233
Query: 252 GSERA 256
GSE+
Sbjct: 234 GSEKV 238
>pdb|3PXN|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Kin10NOD IN Complex With Divalent Manganese And Adp
Length = 344
Score = 109 bits (272), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 80/290 (27%), Positives = 139/290 (47%), Gaps = 32/290 (11%)
Query: 70 YTFDRVFSCDCTTRKVYEEGAKEVALAVVSGINSSVFAYGQTSSGKTYTM---------- 119
+ FD F + ++Y+ + ++ G + AYGQT +GK+Y+M
Sbjct: 63 FHFDHAFPATISQDEMYQALILPLVDKLLEGFQCTALAYGQTGTGKSYSMGMTPPGEILP 122
Query: 120 --IGITEYTMSDIYDYIEKHKERE---FVLKFSAMEIYNESVRDLLSADTSPLRLLDDPE 174
+GI + DI++ + +E + S +EIYNE DLL + + +
Sbjct: 123 EHLGILPRALGDIFERVTARQENNKDAIQVYASFIEIYNEKPFDLLGSTPHMPMVAARCQ 182
Query: 175 RGTIVEKLTEETLKDWNHLKELLSTCEAQRQIGETSLNETSSRSHQILRLTVESSACEFI 234
R T L + D +H+ EL + R++ T++N SSRSH I+ + V+S
Sbjct: 183 RCTC---LPLHSQADLHHILELGTR---NRRVRPTNMNSNSSRSHAIVTIHVKSKTHH-- 234
Query: 235 GNDPSSLTATVNFVDLAGSERASQALSAGTRLKEGCHINRSLLTLGTVIRKLSKGRNGHV 294
+ +N VDLAGSE + G +EG +IN LL++ V+ ++ G +
Sbjct: 235 --------SRMNIVDLAGSEGVRRTGHEGVARQEGVNINLGLLSINKVVMSMAAGHTV-I 285
Query: 295 PFRDSKLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLLFASCAKEV 344
P+RDS LT +LQ+SL + + +SP + + ++ +TL F + AK++
Sbjct: 286 PYRDSVLTTVLQASLTAQSYLTFLACISPHQCDLSETLSTLRFGTSAKKL 335
>pdb|3DC4|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Nod In Complex With Adp
pdb|3DCB|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Nod In Complex With Amppnp
pdb|3DCO|N Chain N, Drosophila Nod (3dc4) And Bovine Tubulin (1jff) Docked
Into The 11-Angstrom Cryo-Em Map Of Nucleotide-Free Nod
Complexed To The Microtubule
Length = 344
Score = 108 bits (270), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 80/288 (27%), Positives = 137/288 (47%), Gaps = 32/288 (11%)
Query: 70 YTFDRVFSCDCTTRKVYEEGAKEVALAVVSGINSSVFAYGQTSSGKTYTM---------- 119
+ FD F + ++Y+ + ++ G + AYGQT +GK+Y+M
Sbjct: 63 FHFDHAFPATISQDEMYQALILPLVDKLLEGFQCTALAYGQTGTGKSYSMGMTPPGEILP 122
Query: 120 --IGITEYTMSDIYDYIEKHKERE---FVLKFSAMEIYNESVRDLLSADTSPLRLLDDPE 174
+GI + DI++ + +E + S +EIYNE DLL + + +
Sbjct: 123 EHLGILPRALGDIFERVTARQENNKDAIQVYASFIEIYNEKPFDLLGSTPHMPMVAARCQ 182
Query: 175 RGTIVEKLTEETLKDWNHLKELLSTCEAQRQIGETSLNETSSRSHQILRLTVESSACEFI 234
R T L + D +H+ EL + R++ T++N SSRSH I+ + V+S
Sbjct: 183 RCTC---LPLHSQADLHHILELGTR---NRRVRPTNMNSNSSRSHAIVTIHVKSKTHH-- 234
Query: 235 GNDPSSLTATVNFVDLAGSERASQALSAGTRLKEGCHINRSLLTLGTVIRKLSKGRNGHV 294
+ +N VDLAGSE + G +EG +IN LL++ V+ ++ G +
Sbjct: 235 --------SRMNIVDLAGSEGVRRTGHEGVARQEGVNINLGLLSINKVVMSMAAGHTV-I 285
Query: 295 PFRDSKLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLLFASCAK 342
P+RDS LT +LQ+SL + + +SP + + ++ +TL F + AK
Sbjct: 286 PYRDSVLTTVLQASLTAQSYLTFLACISPHQCDLSETLSTLRFGTSAK 333
>pdb|3KIN|B Chain B, Kinesin (Dimeric) From Rattus Norvegicus
pdb|3KIN|D Chain D, Kinesin (Dimeric) From Rattus Norvegicus
Length = 117
Score = 80.9 bits (198), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 45/117 (38%), Positives = 68/117 (58%), Gaps = 17/117 (14%)
Query: 273 NRSLLTLGTVIRKLSKGRNGHVPFRDSKLTRILQSSLGGNARTAIICTLSPARSHVEQSR 332
N+SL LG VI L++G HVP+RDSK+TRILQ SLGGN RT I+ SP+ + +++
Sbjct: 1 NKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLGGNCRTTIVICCSPSVFNEAETK 60
Query: 333 NTLLFASCAKEVTTNAQVNIVMS-----------------DKALVKHLQRELSRLEN 372
+TL+F AK + VN+ ++ K++++HL+ EL+R N
Sbjct: 61 STLMFGQRAKTIKNTVSVNLELTAEEWKKKYEKEKEKNKALKSVIQHLEVELNRWRN 117
>pdb|2KIN|B Chain B, Kinesin (Monomeric) From Rattus Norvegicus
Length = 100
Score = 77.8 bits (190), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 38/82 (46%), Positives = 54/82 (65%)
Query: 271 HINRSLLTLGTVIRKLSKGRNGHVPFRDSKLTRILQSSLGGNARTAIICTLSPARSHVEQ 330
+IN+SL LG VI L++G HVP+RDSK+TRILQ SL GN RT I+ SP+ + +
Sbjct: 3 NINKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLDGNCRTTIVICCSPSVFNEAE 62
Query: 331 SRNTLLFASCAKEVTTNAQVNI 352
+++TL+F AK + VN+
Sbjct: 63 TKSTLMFGQRAKTIKNTVSVNL 84
>pdb|2Z1T|A Chain A, Crystal Structure Of Hydrogenase Maturation Protein Hype
pdb|2Z1U|A Chain A, Crystal Structure Of Hydrogenase Maturation Protein Hype
In Complex With Atp
Length = 343
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 64/145 (44%), Gaps = 30/145 (20%)
Query: 178 IVEKLTEETLKDWNHLKELLSTCEAQRQIGETSLNETSSRSHQILRLTVES--------S 229
+VEKL E + D + L++ R T+LNE + +S + + + +
Sbjct: 204 VVEKLVLE-VGDIHVLRD------PTRGGLATTLNEIAGQSQAVCHVLETAVPVRESVRN 256
Query: 230 ACEFIGNDPSSLTATVNFVDLAGSERASQALSAGTRLKEGCHINRSLLTLGTV--IRKLS 287
C F+G DP L + + ERA AL+ L+EG H +G+V + +L
Sbjct: 257 GCSFLGLDPLYLANEGKLICILPEERAEAALAV---LREGPH-GEHAARIGSVKSVGELG 312
Query: 288 KGRNGHVPFRDSKLTRILQSSLGGN 312
R G V +++++LGG+
Sbjct: 313 AARAGQV---------VMETALGGH 328
>pdb|2GJ9|A Chain A, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|B Chain B, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|C Chain C, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|D Chain D, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJA|A Chain A, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Nh4+
pdb|2GJA|B Chain B, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Nh4+
Length = 172
Score = 30.0 bits (66), Expect = 6.1, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 32/65 (49%)
Query: 591 TSGVAETEDEDEQCGESRSTTLKEQNELNNIILNSVTPSTVEPSPWRPEKYTPTPSILNL 650
T+G+ E DE E+ G R+ EQ + +++ T V+P+ PE P+ L +
Sbjct: 59 TAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPI 118
Query: 651 TRSRS 655
T R+
Sbjct: 119 TVVRN 123
>pdb|1RFL|A Chain A, Nmr Data Driven Structural Model Of G-Domain Of Mnme
Protein
Length = 172
Score = 30.0 bits (66), Expect = 6.2, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 32/65 (49%)
Query: 591 TSGVAETEDEDEQCGESRSTTLKEQNELNNIILNSVTPSTVEPSPWRPEKYTPTPSILNL 650
T+G+ E DE E+ G R+ EQ + +++ T V+P+ PE P+ L +
Sbjct: 62 TAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPI 121
Query: 651 TRSRS 655
T R+
Sbjct: 122 TVVRN 126
>pdb|3GNI|B Chain B, Structure Of Strad And Mo25
Length = 389
Score = 30.0 bits (66), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 8/44 (18%)
Query: 291 NGHVPFRDSKLTRILQSSLGGNAR----TAII----CTLSPARS 326
NGHVPF+D T++L L G T+ I T+SP+RS
Sbjct: 232 NGHVPFKDMPATQMLLEKLNGTVPCLLDTSTIPAEELTMSPSRS 275
>pdb|2WTK|B Chain B, Structure Of The Heterotrimeric Lkb1-Stradalpha-Mo25alpha
Complex
pdb|2WTK|E Chain E, Structure Of The Heterotrimeric Lkb1-Stradalpha-Mo25alpha
Complex
Length = 373
Score = 30.0 bits (66), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 8/44 (18%)
Query: 291 NGHVPFRDSKLTRILQSSLGGNAR----TAII----CTLSPARS 326
NGHVPF+D T++L L G T+ I T+SP+RS
Sbjct: 216 NGHVPFKDMPATQMLLEKLNGTVPCLLDTSTIPAEELTMSPSRS 259
>pdb|2DLD|A Chain A, D-Lactate Dehydrogenase Complexed With Nadh And Oxamate
pdb|2DLD|B Chain B, D-Lactate Dehydrogenase Complexed With Nadh And Oxamate
Length = 337
Score = 30.0 bits (66), Expect = 7.5, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 814 ADNVDTLLKSGVPAKSVRDIGVDNIQED 841
AD + L +GV S+R++GVDNI D
Sbjct: 60 ADTLQALADAGVTKMSLRNVGVDNIDMD 87
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.128 0.362
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,792,420
Number of Sequences: 62578
Number of extensions: 1110265
Number of successful extensions: 2387
Number of sequences better than 100.0: 84
Number of HSP's better than 100.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 2080
Number of HSP's gapped (non-prelim): 96
length of query: 1027
length of database: 14,973,337
effective HSP length: 109
effective length of query: 918
effective length of database: 8,152,335
effective search space: 7483843530
effective search space used: 7483843530
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 56 (26.2 bits)