Query 001693
Match_columns 1027
No_of_seqs 344 out of 2124
Neff 5.1
Searched_HMMs 46136
Date Fri Mar 29 07:04:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001693.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001693hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0245 Kinesin-like protein [ 100.0 1.1E-86 2.5E-91 783.2 33.9 357 19-381 3-384 (1221)
2 KOG0242 Kinesin-like protein [ 100.0 1.5E-85 3.3E-90 784.7 33.3 400 18-429 4-411 (675)
3 KOG0243 Kinesin-like protein [ 100.0 5.1E-85 1.1E-89 783.2 35.7 398 15-418 44-471 (1041)
4 PF11995 DUF3490: Domain of un 100.0 5.5E-87 1.2E-91 654.5 14.3 160 851-1010 1-161 (161)
5 KOG4280 Kinesin-like protein [ 100.0 1.2E-84 2.6E-89 753.7 29.6 356 19-378 4-369 (574)
6 KOG0240 Kinesin (SMY1 subfamil 100.0 3E-79 6.6E-84 692.9 31.7 399 18-427 5-446 (607)
7 PLN03188 kinesin-12 family pro 100.0 2.5E-78 5.4E-83 731.0 36.6 345 19-377 97-472 (1320)
8 cd01370 KISc_KIP3_like Kinesin 100.0 2.4E-76 5.2E-81 661.0 34.0 323 21-344 1-338 (338)
9 KOG0241 Kinesin-like protein [ 100.0 3.1E-76 6.7E-81 681.9 33.1 360 19-379 3-385 (1714)
10 cd01373 KISc_KLP2_like Kinesin 100.0 5.3E-76 1.1E-80 658.1 34.0 315 20-344 1-337 (337)
11 cd01368 KISc_KIF23_like Kinesi 100.0 1.1E-74 2.4E-79 649.3 34.2 318 20-342 1-345 (345)
12 cd01365 KISc_KIF1A_KIF1B Kines 100.0 5.6E-74 1.2E-78 645.8 35.5 331 20-351 1-356 (356)
13 cd01367 KISc_KIF2_like Kinesin 100.0 2.7E-72 5.8E-77 624.6 33.7 313 20-342 1-322 (322)
14 cd01371 KISc_KIF3 Kinesin moto 100.0 3.8E-72 8.2E-77 625.8 34.8 322 20-344 1-333 (333)
15 cd01364 KISc_BimC_Eg5 Kinesin 100.0 4.6E-72 9.9E-77 629.1 34.8 327 20-352 2-351 (352)
16 cd01374 KISc_CENP_E Kinesin mo 100.0 1.2E-71 2.6E-76 618.6 34.1 314 21-344 1-321 (321)
17 cd01369 KISc_KHC_KIF5 Kinesin 100.0 4.6E-71 9.9E-76 614.6 35.0 314 20-344 2-325 (325)
18 cd01376 KISc_KID_like Kinesin 100.0 1.5E-70 3.4E-75 609.6 34.1 308 21-342 1-319 (319)
19 cd01372 KISc_KIF4 Kinesin moto 100.0 1.7E-70 3.6E-75 613.6 33.5 315 21-345 2-341 (341)
20 cd01375 KISc_KIF9_like Kinesin 100.0 2.3E-69 4.9E-74 603.8 33.6 314 21-342 1-334 (334)
21 cd01366 KISc_C_terminal Kinesi 100.0 3.7E-68 7.9E-73 592.0 35.0 315 20-347 2-329 (329)
22 smart00129 KISc Kinesin motor, 100.0 2.8E-67 6.1E-72 585.7 35.3 325 21-351 1-335 (335)
23 cd00106 KISc Kinesin motor dom 100.0 3.1E-66 6.7E-71 575.0 34.9 317 21-342 1-328 (328)
24 PF00225 Kinesin: Kinesin moto 100.0 6.1E-67 1.3E-71 582.2 24.8 315 27-344 1-335 (335)
25 KOG0239 Kinesin (KAR3 subfamil 100.0 6.5E-67 1.4E-71 623.0 24.2 324 19-351 313-647 (670)
26 KOG0246 Kinesin-like protein [ 100.0 1.6E-65 3.6E-70 579.0 28.2 328 13-349 201-546 (676)
27 KOG0244 Kinesin-like protein [ 100.0 2.8E-64 6.1E-69 596.9 13.7 336 28-378 1-350 (913)
28 KOG0247 Kinesin-like protein [ 100.0 1.5E-60 3.4E-65 551.3 30.1 331 16-351 27-443 (809)
29 COG5059 KIP1 Kinesin-like prot 100.0 5.1E-58 1.1E-62 542.6 28.0 318 17-352 19-344 (568)
30 cd01363 Motor_domain Myosin an 100.0 1.1E-45 2.4E-50 381.3 18.0 173 85-323 8-186 (186)
31 COG5059 KIP1 Kinesin-like prot 97.7 4.9E-07 1.1E-11 109.1 -10.8 206 67-287 352-566 (568)
32 COG0556 UvrB Helicase subunit 94.1 0.089 1.9E-06 62.9 6.4 84 69-157 4-101 (663)
33 PF00308 Bac_DnaA: Bacterial d 92.3 0.058 1.3E-06 58.1 1.4 51 68-121 3-53 (219)
34 PRK06893 DNA replication initi 91.3 0.15 3.2E-06 55.2 3.0 51 67-123 10-60 (229)
35 PRK06620 hypothetical protein; 88.8 0.22 4.8E-06 53.6 1.8 50 67-120 10-62 (214)
36 PRK14086 dnaA chromosomal repl 87.7 0.26 5.7E-06 60.7 1.7 53 67-122 282-334 (617)
37 PRK12377 putative replication 87.7 0.38 8.1E-06 53.2 2.8 53 70-124 71-123 (248)
38 COG2805 PilT Tfp pilus assembl 87.5 0.27 5.9E-06 55.7 1.5 32 89-120 112-143 (353)
39 PRK08116 hypothetical protein; 85.9 0.42 9.1E-06 53.2 2.0 51 69-121 81-133 (268)
40 PRK06526 transposase; Provisio 85.4 0.4 8.7E-06 53.0 1.5 44 76-124 77-120 (254)
41 PRK09087 hypothetical protein; 84.7 0.55 1.2E-05 51.0 2.1 48 67-120 15-62 (226)
42 PRK07952 DNA replication prote 84.6 0.63 1.4E-05 51.3 2.6 54 69-124 68-121 (244)
43 PRK06835 DNA replication prote 84.6 0.39 8.5E-06 55.1 1.0 41 84-126 167-207 (329)
44 PRK14088 dnaA chromosomal repl 84.4 0.56 1.2E-05 55.8 2.2 51 67-121 99-149 (440)
45 PRK08084 DNA replication initi 84.0 0.68 1.5E-05 50.3 2.5 50 67-122 16-65 (235)
46 TIGR00362 DnaA chromosomal rep 83.9 0.6 1.3E-05 54.6 2.2 52 67-121 104-155 (405)
47 PF04851 ResIII: Type III rest 83.9 0.49 1.1E-05 47.4 1.2 31 91-121 13-44 (184)
48 PRK05642 DNA replication initi 83.6 0.81 1.8E-05 49.8 2.9 49 67-122 13-65 (234)
49 COG2804 PulE Type II secretory 83.0 0.74 1.6E-05 55.4 2.4 35 87-121 243-277 (500)
50 PRK00149 dnaA chromosomal repl 82.7 0.7 1.5E-05 54.9 2.1 53 67-122 116-168 (450)
51 PRK10884 SH3 domain-containing 82.6 4.2 9.1E-05 44.0 7.7 73 354-426 89-163 (206)
52 COG1474 CDC6 Cdc6-related prot 82.5 2.3 4.9E-05 49.7 6.1 58 86-151 26-83 (366)
53 PRK14087 dnaA chromosomal repl 82.4 0.74 1.6E-05 55.0 2.2 50 69-121 111-160 (450)
54 TIGR03420 DnaA_homol_Hda DnaA 80.8 1.2 2.7E-05 47.0 3.0 49 67-121 9-57 (226)
55 PRK08727 hypothetical protein; 79.9 1.1 2.4E-05 48.6 2.3 48 67-122 13-61 (233)
56 PRK08939 primosomal protein Dn 79.2 1.1 2.3E-05 51.1 1.9 53 70-123 124-177 (306)
57 PRK00411 cdc6 cell division co 79.1 1.6 3.5E-05 50.3 3.4 21 99-119 52-72 (394)
58 PRK08181 transposase; Validate 79.1 1.4 3.1E-05 49.3 2.8 25 99-125 105-129 (269)
59 TIGR02928 orc1/cdc6 family rep 78.2 1.7 3.8E-05 49.5 3.3 21 99-119 37-57 (365)
60 PRK08903 DnaA regulatory inact 77.9 1.9 4.2E-05 46.0 3.3 50 67-121 12-61 (227)
61 cd00009 AAA The AAA+ (ATPases 77.8 1.7 3.7E-05 40.9 2.6 27 93-119 10-36 (151)
62 cd00046 DEXDc DEAD-like helica 75.8 0.95 2.1E-05 42.2 0.3 18 105-122 3-20 (144)
63 PF04420 CHD5: CHD5-like prote 75.6 15 0.00032 38.2 8.9 65 358-426 40-104 (161)
64 TIGR00631 uvrb excinuclease AB 75.5 2.7 5.9E-05 52.7 4.2 83 70-157 2-98 (655)
65 COG0593 DnaA ATPase involved i 73.4 2.2 4.9E-05 50.4 2.5 51 67-120 81-131 (408)
66 PTZ00112 origin recognition co 72.2 6.5 0.00014 50.8 6.2 22 99-120 778-799 (1164)
67 PRK06921 hypothetical protein; 72.2 2.5 5.5E-05 47.1 2.5 38 85-123 98-138 (266)
68 TIGR02538 type_IV_pilB type IV 70.0 2.4 5.1E-05 52.2 1.8 29 93-121 307-335 (564)
69 PRK10436 hypothetical protein; 69.8 2.6 5.6E-05 50.8 2.0 29 93-121 209-237 (462)
70 TIGR02533 type_II_gspE general 69.6 2.7 5.9E-05 50.8 2.2 29 93-121 233-261 (486)
71 COG1484 DnaC DNA replication p 68.1 3.2 6.9E-05 46.0 2.2 52 69-123 75-126 (254)
72 PF00270 DEAD: DEAD/DEAH box h 68.0 2.7 5.8E-05 41.9 1.4 26 93-120 7-32 (169)
73 PF12846 AAA_10: AAA-like doma 67.8 1.8 3.9E-05 47.0 0.2 20 102-121 1-20 (304)
74 PF01935 DUF87: Domain of unkn 67.5 1.9 4.1E-05 46.0 0.3 24 104-127 25-48 (229)
75 PRK12422 chromosomal replicati 67.3 4 8.6E-05 48.9 2.9 53 67-122 105-161 (445)
76 smart00382 AAA ATPases associa 67.1 2.2 4.7E-05 39.6 0.5 19 103-121 3-21 (148)
77 smart00053 DYNc Dynamin, GTPas 66.3 14 0.0003 40.9 6.6 54 186-256 85-138 (240)
78 PRK03992 proteasome-activating 65.9 4.1 8.9E-05 47.8 2.6 51 69-119 127-182 (389)
79 PF01695 IstB_IS21: IstB-like 65.7 2.7 5.9E-05 44.0 1.0 22 103-124 48-69 (178)
80 PF13401 AAA_22: AAA domain; P 65.5 2 4.3E-05 41.2 -0.1 18 102-119 4-21 (131)
81 TIGR01420 pilT_fam pilus retra 64.9 3.5 7.5E-05 47.5 1.7 30 92-121 112-141 (343)
82 PLN00020 ribulose bisphosphate 64.8 11 0.00025 44.4 5.8 69 68-136 110-205 (413)
83 PF13245 AAA_19: Part of AAA d 64.8 3.5 7.7E-05 37.4 1.4 27 94-121 3-29 (76)
84 TIGR02525 plasmid_TraJ plasmid 64.3 3.8 8.3E-05 48.0 2.0 28 93-121 141-168 (372)
85 cd01131 PilT Pilus retraction 63.8 2.8 6E-05 44.4 0.6 18 103-120 2-19 (198)
86 cd01129 PulE-GspE PulE/GspE Th 63.7 4.4 9.5E-05 45.1 2.2 29 93-121 71-99 (264)
87 PF00437 T2SE: Type II/IV secr 63.6 2.7 5.8E-05 46.2 0.5 18 102-119 127-144 (270)
88 TIGR03015 pepcterm_ATPase puta 63.1 5.2 0.00011 43.5 2.6 22 98-119 39-60 (269)
89 TIGR02524 dot_icm_DotB Dot/Icm 62.8 4 8.8E-05 47.5 1.8 25 97-121 129-153 (358)
90 KOG0989 Replication factor C, 62.5 6 0.00013 45.4 2.9 42 78-119 32-74 (346)
91 COG5008 PilU Tfp pilus assembl 62.1 5.4 0.00012 44.9 2.5 31 90-120 115-145 (375)
92 PF01637 Arch_ATPase: Archaeal 60.3 4 8.6E-05 42.5 1.0 29 91-119 9-37 (234)
93 KOG0239 Kinesin (KAR3 subfamil 60.1 4.7 0.0001 50.7 1.8 81 69-164 27-113 (670)
94 PRK09183 transposase/IS protei 59.7 3.8 8.2E-05 45.5 0.8 46 72-122 77-122 (259)
95 PF14282 FlxA: FlxA-like prote 59.3 44 0.00094 32.5 7.9 61 357-422 18-78 (106)
96 PF13604 AAA_30: AAA domain; P 59.3 5 0.00011 42.5 1.6 29 92-120 8-36 (196)
97 PTZ00454 26S protease regulato 58.3 6.4 0.00014 46.6 2.4 52 69-120 141-197 (398)
98 PF13479 AAA_24: AAA domain 56.7 4.9 0.00011 43.0 1.0 19 102-120 3-21 (213)
99 TIGR02782 TrbB_P P-type conjug 56.2 6 0.00013 44.9 1.6 29 91-120 122-150 (299)
100 smart00487 DEXDc DEAD-like hel 56.0 6.5 0.00014 39.1 1.7 27 94-121 17-43 (201)
101 PRK12402 replication factor C 55.4 8.5 0.00018 43.2 2.7 43 71-121 13-55 (337)
102 PF13086 AAA_11: AAA domain; P 55.0 4.2 9.1E-05 42.2 0.2 32 94-126 10-41 (236)
103 PRK13894 conjugal transfer ATP 55.0 6.6 0.00014 45.1 1.7 29 92-121 139-167 (319)
104 PHA02544 44 clamp loader, smal 54.5 8.6 0.00019 43.1 2.6 23 99-121 39-62 (316)
105 PF05970 PIF1: PIF1-like helic 54.4 8.8 0.00019 44.6 2.7 37 79-119 3-39 (364)
106 PF01580 FtsK_SpoIIIE: FtsK/Sp 54.4 3.2 6.9E-05 43.6 -0.8 18 104-121 40-57 (205)
107 PF01486 K-box: K-box region; 54.3 95 0.0021 29.6 9.2 69 358-426 19-99 (100)
108 PF00004 AAA: ATPase family as 54.1 4.5 9.7E-05 38.4 0.2 15 105-119 1-15 (132)
109 COG1201 Lhr Lhr-like helicases 53.6 17 0.00037 46.7 5.1 25 93-119 30-54 (814)
110 COG1222 RPT1 ATP-dependent 26S 52.6 9.9 0.00021 44.5 2.6 68 71-138 149-244 (406)
111 PF00448 SRP54: SRP54-type pro 52.5 4.9 0.00011 42.8 0.2 17 104-120 3-19 (196)
112 PRK11448 hsdR type I restricti 52.2 7.8 0.00017 51.5 2.0 36 90-126 422-457 (1123)
113 PRK04406 hypothetical protein; 52.0 98 0.0021 28.6 8.4 50 360-425 6-55 (75)
114 PF13207 AAA_17: AAA domain; P 51.9 5.4 0.00012 37.9 0.3 16 104-119 1-16 (121)
115 PHA00729 NTP-binding motif con 51.8 7.7 0.00017 42.6 1.5 36 89-124 4-39 (226)
116 TIGR01242 26Sp45 26S proteasom 51.7 17 0.00036 42.1 4.4 52 69-120 118-174 (364)
117 COG1223 Predicted ATPase (AAA+ 51.7 11 0.00024 42.5 2.7 38 101-138 150-210 (368)
118 cd01382 MYSc_type_VI Myosin mo 51.0 65 0.0014 41.2 9.6 35 84-119 73-108 (717)
119 cd00124 MYSc Myosin motor doma 49.9 72 0.0016 40.5 9.8 36 83-119 67-103 (679)
120 PF13191 AAA_16: AAA ATPase do 49.5 5 0.00011 40.5 -0.3 32 98-137 20-51 (185)
121 PRK13833 conjugal transfer pro 49.1 11 0.00024 43.5 2.3 28 92-120 135-162 (323)
122 PF03999 MAP65_ASE1: Microtubu 49.0 11 0.00024 47.0 2.5 47 852-898 288-336 (619)
123 PTZ00361 26 proteosome regulat 49.0 26 0.00057 42.1 5.5 49 71-119 181-234 (438)
124 CHL00081 chlI Mg-protoporyphyr 48.7 7 0.00015 45.5 0.7 44 68-119 12-55 (350)
125 PF05673 DUF815: Protein of un 48.7 24 0.00053 39.4 4.8 125 69-222 23-155 (249)
126 PRK02119 hypothetical protein; 48.5 1.2E+02 0.0026 27.8 8.4 15 361-375 5-19 (73)
127 cd00268 DEADc DEAD-box helicas 48.3 12 0.00025 38.9 2.2 24 93-118 29-52 (203)
128 COG4962 CpaF Flp pilus assembl 48.2 10 0.00022 44.1 1.8 29 91-120 163-191 (355)
129 PRK12723 flagellar biosynthesi 47.9 15 0.00032 43.5 3.1 19 102-120 174-192 (388)
130 TIGR03499 FlhF flagellar biosy 47.9 7.1 0.00015 43.8 0.5 21 104-124 196-216 (282)
131 PRK06547 hypothetical protein; 47.8 14 0.0003 38.7 2.6 30 90-119 3-32 (172)
132 cd01130 VirB11-like_ATPase Typ 47.4 12 0.00025 39.2 2.0 29 91-120 15-43 (186)
133 TIGR01241 FtsH_fam ATP-depende 47.1 14 0.00031 44.6 3.0 51 69-120 51-106 (495)
134 PF06005 DUF904: Protein of un 46.8 1.4E+02 0.0029 27.5 8.4 52 359-426 19-70 (72)
135 KOG0953 Mitochondrial RNA heli 46.7 21 0.00046 43.8 4.2 33 104-136 193-237 (700)
136 PRK11776 ATP-dependent RNA hel 46.5 12 0.00026 44.6 2.1 26 92-119 33-58 (460)
137 PTZ00424 helicase 45; Provisio 46.4 11 0.00023 43.6 1.7 27 91-119 56-82 (401)
138 PF00580 UvrD-helicase: UvrD/R 46.2 8.1 0.00018 42.3 0.7 21 100-120 11-31 (315)
139 PF00910 RNA_helicase: RNA hel 45.8 6.6 0.00014 37.4 -0.1 26 105-134 1-26 (107)
140 PF12325 TMF_TATA_bd: TATA ele 45.8 41 0.00089 33.7 5.4 35 394-428 60-94 (120)
141 KOG0727 26S proteasome regulat 45.6 41 0.0009 37.9 5.9 113 19-138 96-248 (408)
142 PF00063 Myosin_head: Myosin h 45.2 13 0.00028 46.9 2.3 35 84-119 67-102 (689)
143 PRK13764 ATPase; Provisional 44.6 9.1 0.0002 47.6 0.8 22 100-121 255-276 (602)
144 PF06048 DUF927: Domain of unk 44.5 17 0.00038 40.8 3.0 33 87-120 179-211 (286)
145 PF02562 PhoH: PhoH-like prote 43.9 15 0.00032 39.9 2.1 19 101-119 18-36 (205)
146 PRK13900 type IV secretion sys 43.6 13 0.00029 42.9 1.9 28 92-120 151-178 (332)
147 TIGR01243 CDC48 AAA family ATP 43.5 29 0.00063 44.1 5.0 52 68-119 173-229 (733)
148 KOG0739 AAA+-type ATPase [Post 43.4 20 0.00044 41.1 3.2 69 71-139 131-226 (439)
149 COG3883 Uncharacterized protei 43.2 36 0.00078 38.4 5.0 40 387-426 65-104 (265)
150 TIGR00348 hsdR type I site-spe 42.9 16 0.00035 46.0 2.7 36 89-125 246-286 (667)
151 PF13671 AAA_33: AAA domain; P 42.9 8.9 0.00019 37.3 0.3 15 105-119 2-16 (143)
152 PF08317 Spc7: Spc7 kinetochor 42.8 93 0.002 35.9 8.5 66 356-430 207-272 (325)
153 KOG0729 26S proteasome regulat 42.5 16 0.00034 41.3 2.1 39 100-138 207-270 (435)
154 PRK11192 ATP-dependent RNA hel 42.4 14 0.00031 43.4 1.9 26 92-119 30-55 (434)
155 COG5019 CDC3 Septin family pro 42.0 35 0.00077 40.1 4.9 106 99-224 20-140 (373)
156 PRK13851 type IV secretion sys 41.9 10 0.00022 44.2 0.5 28 92-120 153-180 (344)
157 PF07728 AAA_5: AAA domain (dy 41.6 8.5 0.00019 37.7 -0.0 15 105-119 2-16 (139)
158 PRK07003 DNA polymerase III su 41.6 21 0.00046 45.7 3.3 42 71-120 14-56 (830)
159 PRK00295 hypothetical protein; 41.6 1.7E+02 0.0037 26.4 8.2 30 392-421 23-52 (68)
160 PF10205 KLRAQ: Predicted coil 41.6 98 0.0021 30.3 7.0 65 361-427 8-72 (102)
161 PF02388 FemAB: FemAB family; 41.4 1.6E+02 0.0035 35.0 10.4 45 275-322 195-239 (406)
162 PF13238 AAA_18: AAA domain; P 41.2 9.8 0.00021 35.9 0.3 16 105-120 1-16 (129)
163 PRK11637 AmiB activator; Provi 41.2 1.3E+02 0.0028 35.9 9.6 40 389-428 97-136 (428)
164 PRK02793 phi X174 lysis protei 41.1 1.6E+02 0.0034 26.9 8.0 31 397-427 24-54 (72)
165 KOG0335 ATP-dependent RNA heli 41.1 11 0.00023 45.6 0.6 22 97-120 108-129 (482)
166 PF08826 DMPK_coil: DMPK coile 40.8 96 0.0021 27.7 6.3 31 386-416 30-60 (61)
167 PLN03025 replication factor C 40.7 19 0.0004 41.0 2.5 23 100-122 32-54 (319)
168 COG2433 Uncharacterized conser 40.6 58 0.0013 40.5 6.6 35 390-424 476-510 (652)
169 KOG0735 AAA+-type ATPase [Post 40.3 18 0.00039 45.7 2.3 38 101-138 700-760 (952)
170 PRK04837 ATP-dependent RNA hel 40.1 16 0.00034 43.0 1.8 26 92-119 37-62 (423)
171 PF03215 Rad17: Rad17 cell cyc 40.1 17 0.00037 44.6 2.1 30 90-119 31-62 (519)
172 PF09726 Macoilin: Transmembra 39.9 41 0.00089 42.8 5.4 23 358-380 418-440 (697)
173 PF06414 Zeta_toxin: Zeta toxi 39.9 13 0.00027 39.3 0.9 19 101-119 14-32 (199)
174 cd01127 TrwB Bacterial conjuga 39.9 10 0.00022 44.8 0.2 22 102-123 42-63 (410)
175 PF04102 SlyX: SlyX; InterPro 39.5 1.1E+02 0.0024 27.6 6.6 31 397-427 20-50 (69)
176 PRK11637 AmiB activator; Provi 39.5 83 0.0018 37.5 7.7 39 389-427 90-128 (428)
177 PRK04325 hypothetical protein; 39.5 1.7E+02 0.0037 26.8 8.0 50 362-420 6-55 (74)
178 PF07106 TBPIP: Tat binding pr 39.5 30 0.00065 35.9 3.6 18 360-377 88-105 (169)
179 PF14257 DUF4349: Domain of un 39.4 1.5E+02 0.0033 32.8 9.3 96 313-427 94-194 (262)
180 PF07724 AAA_2: AAA domain (Cd 38.8 12 0.00026 39.0 0.6 17 103-119 4-20 (171)
181 PRK10590 ATP-dependent RNA hel 38.8 19 0.00041 43.0 2.2 26 92-119 30-55 (456)
182 PRK00440 rfc replication facto 38.6 22 0.00048 39.5 2.6 22 99-120 35-56 (319)
183 TIGR00376 DNA helicase, putati 38.2 17 0.00038 45.6 1.8 22 104-125 175-196 (637)
184 PF07795 DUF1635: Protein of u 37.8 1E+02 0.0022 33.9 7.2 36 387-422 25-60 (214)
185 PF10236 DAP3: Mitochondrial r 37.7 19 0.00041 41.1 2.0 26 98-123 19-44 (309)
186 PRK14961 DNA polymerase III su 37.6 23 0.0005 41.2 2.6 41 71-119 14-55 (363)
187 PF05729 NACHT: NACHT domain 37.5 13 0.00029 36.5 0.5 17 104-120 2-18 (166)
188 COG1419 FlhF Flagellar GTP-bin 37.4 24 0.00051 42.0 2.6 37 84-120 181-221 (407)
189 PF06309 Torsin: Torsin; Inte 37.3 16 0.00034 37.0 1.0 24 105-132 56-79 (127)
190 PRK13341 recombination factor 37.2 21 0.00045 45.6 2.3 23 99-121 49-71 (725)
191 smart00242 MYSc Myosin. Large 37.1 28 0.00061 44.0 3.5 37 83-119 73-109 (677)
192 TIGR02881 spore_V_K stage V sp 36.6 16 0.00034 40.3 1.1 19 102-120 42-60 (261)
193 PRK11331 5-methylcytosine-spec 36.4 23 0.0005 42.8 2.4 26 309-338 320-345 (459)
194 PRK14722 flhF flagellar biosyn 36.1 15 0.00033 43.2 0.8 22 102-123 137-158 (374)
195 PRK00736 hypothetical protein; 35.9 2.2E+02 0.0048 25.7 8.0 29 392-420 23-51 (68)
196 PF07693 KAP_NTPase: KAP famil 35.7 54 0.0012 36.6 5.1 54 90-151 5-62 (325)
197 COG2256 MGS1 ATPase related to 35.2 18 0.00038 43.0 1.2 43 71-118 22-64 (436)
198 TIGR02338 gimC_beta prefoldin, 35.1 2.3E+02 0.0049 27.6 8.6 43 384-426 63-105 (110)
199 KOG0995 Centromere-associated 35.0 1.4E+02 0.0031 37.0 8.5 63 359-427 309-371 (581)
200 PRK04195 replication factor C 34.9 18 0.00039 43.6 1.2 30 90-119 26-56 (482)
201 TIGR00618 sbcc exonuclease Sbc 34.9 22 0.00048 47.0 2.1 24 103-126 27-57 (1042)
202 CHL00176 ftsH cell division pr 34.5 24 0.00051 44.4 2.2 18 103-120 217-234 (638)
203 KOG1962 B-cell receptor-associ 34.5 3E+02 0.0064 30.5 10.1 35 394-428 178-212 (216)
204 cd01120 RecA-like_NTPases RecA 33.5 16 0.00035 35.5 0.4 18 105-122 2-19 (165)
205 cd01384 MYSc_type_XI Myosin mo 33.4 36 0.00079 43.1 3.6 35 84-119 70-105 (674)
206 TIGR00614 recQ_fam ATP-depende 33.3 27 0.0006 41.9 2.4 27 91-119 17-43 (470)
207 PRK13342 recombination factor 33.0 22 0.00048 42.0 1.5 45 71-120 10-54 (413)
208 PF02456 Adeno_IVa2: Adenoviru 32.9 15 0.00032 42.4 0.0 42 277-325 274-319 (369)
209 KOG2543 Origin recognition com 32.9 20 0.00043 42.4 1.1 37 104-153 32-68 (438)
210 PRK11634 ATP-dependent RNA hel 32.8 24 0.00052 44.3 1.9 25 93-119 36-60 (629)
211 PRK04328 hypothetical protein; 32.8 28 0.0006 38.4 2.1 27 92-118 10-39 (249)
212 cd01383 MYSc_type_VIII Myosin 32.6 41 0.0009 42.6 3.9 35 84-119 74-109 (677)
213 TIGR02902 spore_lonB ATP-depen 32.6 29 0.00062 42.7 2.4 41 70-118 62-102 (531)
214 TIGR02237 recomb_radB DNA repa 32.6 24 0.00052 37.1 1.6 25 95-119 2-29 (209)
215 COG4096 HsdR Type I site-speci 32.4 35 0.00076 43.8 3.1 41 85-126 168-209 (875)
216 KOG0651 26S proteasome regulat 32.3 19 0.00042 41.6 0.8 73 67-139 126-226 (388)
217 cd01385 MYSc_type_IX Myosin mo 32.2 39 0.00085 42.9 3.6 36 84-120 76-112 (692)
218 PRK10536 hypothetical protein; 32.2 26 0.00057 39.4 1.9 42 69-120 51-92 (262)
219 TIGR02030 BchI-ChlI magnesium 32.1 31 0.00066 40.1 2.4 43 70-120 1-43 (337)
220 PF10412 TrwB_AAD_bind: Type I 31.9 13 0.00028 43.7 -0.7 18 104-121 17-34 (386)
221 COG1219 ClpX ATP-dependent pro 31.9 20 0.00044 41.5 0.9 17 103-119 98-114 (408)
222 PF00735 Septin: Septin; Inte 31.8 12 0.00027 42.1 -0.8 21 99-119 1-21 (281)
223 smart00763 AAA_PrkA PrkA AAA d 31.7 44 0.00096 39.3 3.6 46 69-119 45-95 (361)
224 cd01378 MYSc_type_I Myosin mot 31.6 41 0.00089 42.6 3.6 35 84-119 68-103 (674)
225 COG0606 Predicted ATPase with 31.6 37 0.00079 41.2 3.0 27 97-125 195-224 (490)
226 KOG0340 ATP-dependent RNA heli 31.4 48 0.001 39.0 3.8 28 91-120 35-62 (442)
227 cd01381 MYSc_type_VII Myosin m 31.4 43 0.00094 42.4 3.8 35 84-119 68-103 (671)
228 KOG1803 DNA helicase [Replicat 31.4 20 0.00044 44.3 0.9 24 103-126 202-225 (649)
229 cd01387 MYSc_type_XV Myosin mo 31.2 42 0.00091 42.6 3.6 35 84-119 69-104 (677)
230 PRK00080 ruvB Holliday junctio 31.2 27 0.00059 39.8 1.8 18 103-120 52-69 (328)
231 PF12775 AAA_7: P-loop contain 31.0 24 0.00053 39.5 1.4 26 93-119 25-50 (272)
232 PRK10416 signal recognition pa 31.0 37 0.0008 39.1 2.8 18 103-120 115-132 (318)
233 KOG1514 Origin recognition com 30.9 56 0.0012 41.4 4.5 55 290-350 570-633 (767)
234 PRK05580 primosome assembly pr 30.8 19 0.00041 45.5 0.5 18 103-120 163-180 (679)
235 PLN00206 DEAD-box ATP-dependen 30.8 38 0.00082 41.3 3.0 26 92-119 150-175 (518)
236 PF12329 TMF_DNA_bd: TATA elem 30.7 3.9E+02 0.0085 24.5 8.8 61 357-426 11-71 (74)
237 TIGR01618 phage_P_loop phage n 30.6 18 0.00039 39.6 0.3 20 102-121 12-31 (220)
238 PF01920 Prefoldin_2: Prefoldi 30.4 2.6E+02 0.0056 26.2 8.0 44 385-428 59-102 (106)
239 PHA02244 ATPase-like protein 30.3 44 0.00095 39.6 3.3 46 69-119 91-136 (383)
240 TIGR01817 nifA Nif-specific re 30.3 28 0.0006 42.6 1.8 45 69-119 192-236 (534)
241 cd01377 MYSc_type_II Myosin mo 30.3 43 0.00093 42.6 3.5 36 83-119 72-108 (693)
242 CHL00195 ycf46 Ycf46; Provisio 30.2 32 0.0007 41.9 2.3 17 103-119 260-276 (489)
243 TIGR02903 spore_lon_C ATP-depe 30.2 31 0.00067 43.2 2.2 42 70-119 151-192 (615)
244 TIGR00635 ruvB Holliday juncti 30.1 32 0.00069 38.4 2.1 17 104-120 32-48 (305)
245 PRK14974 cell division protein 29.9 53 0.0012 38.2 3.9 19 102-120 140-158 (336)
246 KOG2373 Predicted mitochondria 29.9 40 0.00087 39.5 2.8 28 92-120 261-291 (514)
247 PF04977 DivIC: Septum formati 29.8 1.3E+02 0.0028 26.7 5.6 28 394-421 23-50 (80)
248 PRK00771 signal recognition pa 29.7 52 0.0011 39.6 3.9 19 102-120 95-113 (437)
249 PRK06067 flagellar accessory p 29.5 36 0.00079 36.6 2.3 29 91-119 11-42 (234)
250 cd01850 CDC_Septin CDC/Septin. 29.3 24 0.00053 39.5 1.0 21 99-119 1-21 (276)
251 KOG3990 Uncharacterized conser 29.3 1.1E+02 0.0025 34.2 5.9 63 358-429 225-294 (305)
252 PRK04537 ATP-dependent RNA hel 29.2 30 0.00065 42.8 1.8 26 92-119 38-63 (572)
253 KOG0730 AAA+-type ATPase [Post 29.0 36 0.00079 42.7 2.4 36 103-138 469-527 (693)
254 TIGR02640 gas_vesic_GvpN gas v 29.0 45 0.00097 37.0 3.0 28 90-119 11-38 (262)
255 PRK05703 flhF flagellar biosyn 28.8 20 0.00043 42.8 0.2 21 103-123 222-242 (424)
256 cd02021 GntK Gluconate kinase 28.6 22 0.00047 35.3 0.4 15 105-119 2-16 (150)
257 cd01123 Rad51_DMC1_radA Rad51_ 28.6 37 0.0008 36.2 2.2 28 92-119 6-36 (235)
258 smart00488 DEXDc2 DEAD-like he 28.5 50 0.0011 37.3 3.3 29 90-120 17-45 (289)
259 smart00489 DEXDc3 DEAD-like he 28.5 50 0.0011 37.3 3.3 29 90-120 17-45 (289)
260 PF05529 Bap31: B-cell recepto 28.5 1.7E+02 0.0037 31.0 7.1 32 393-424 159-190 (192)
261 PF13476 AAA_23: AAA domain; P 28.5 22 0.00048 36.1 0.5 17 103-119 20-36 (202)
262 PF12329 TMF_DNA_bd: TATA elem 28.4 1.3E+02 0.0029 27.5 5.4 33 394-426 32-64 (74)
263 PHA02653 RNA helicase NPH-II; 28.4 46 0.001 42.2 3.3 26 91-118 170-195 (675)
264 PF10458 Val_tRNA-synt_C: Valy 28.4 1.2E+02 0.0025 27.0 4.9 19 358-376 4-22 (66)
265 PRK00131 aroK shikimate kinase 28.3 26 0.00056 35.1 0.9 17 103-119 5-21 (175)
266 PF13173 AAA_14: AAA domain 28.3 24 0.00051 34.5 0.6 16 104-119 4-19 (128)
267 PF06156 DUF972: Protein of un 28.3 2.4E+02 0.0052 27.8 7.5 29 395-423 29-57 (107)
268 PF08614 ATG16: Autophagy prot 28.3 3.1E+02 0.0068 29.2 9.1 56 357-421 115-170 (194)
269 COG3074 Uncharacterized protei 28.1 4.4E+02 0.0094 24.4 8.3 57 359-424 19-75 (79)
270 PRK10865 protein disaggregatio 28.1 50 0.0011 43.1 3.6 45 70-119 565-615 (857)
271 TIGR01243 CDC48 AAA family ATP 28.1 45 0.00097 42.5 3.2 17 103-119 488-504 (733)
272 cd01380 MYSc_type_V Myosin mot 28.0 51 0.0011 42.0 3.6 35 84-119 68-103 (691)
273 PRK14962 DNA polymerase III su 28.0 39 0.00085 41.0 2.5 41 71-119 12-53 (472)
274 COG3598 RepA RecA-family ATPas 28.0 36 0.00078 39.6 2.0 80 72-156 60-142 (402)
275 TIGR03752 conj_TIGR03752 integ 27.9 1.5E+02 0.0032 36.2 7.1 28 398-425 112-139 (472)
276 KOG0726 26S proteasome regulat 27.9 54 0.0012 37.8 3.3 35 104-138 221-278 (440)
277 COG3829 RocR Transcriptional r 27.8 37 0.0008 41.8 2.2 43 67-115 239-281 (560)
278 PRK00846 hypothetical protein; 27.8 3.9E+02 0.0084 25.0 8.2 51 362-421 10-60 (77)
279 PRK01297 ATP-dependent RNA hel 27.8 32 0.00069 41.3 1.7 27 91-119 115-141 (475)
280 PRK10820 DNA-binding transcrip 27.7 31 0.00068 42.1 1.7 47 67-119 198-244 (520)
281 PRK09270 nucleoside triphospha 27.7 52 0.0011 35.5 3.2 36 84-119 14-50 (229)
282 PF13555 AAA_29: P-loop contai 27.6 24 0.00052 31.3 0.5 15 105-119 26-40 (62)
283 KOG0336 ATP-dependent RNA heli 27.5 62 0.0013 38.7 3.8 50 66-120 215-275 (629)
284 smart00787 Spc7 Spc7 kinetocho 27.3 2.5E+02 0.0055 32.5 8.7 64 358-430 204-267 (312)
285 KOG1532 GTPase XAB1, interacts 26.9 60 0.0013 37.1 3.5 36 102-145 19-54 (366)
286 PRK06696 uridine kinase; Valid 26.9 55 0.0012 35.2 3.2 35 84-119 5-39 (223)
287 PRK07261 topology modulation p 26.9 27 0.00058 36.2 0.7 15 105-119 3-17 (171)
288 TIGR03158 cas3_cyano CRISPR-as 26.9 39 0.00085 39.2 2.2 26 94-119 6-31 (357)
289 KOG0926 DEAH-box RNA helicase 26.8 36 0.00078 43.6 1.9 19 101-119 270-288 (1172)
290 PF05496 RuvB_N: Holliday junc 26.8 61 0.0013 36.0 3.5 39 79-118 26-66 (233)
291 TIGR01359 UMP_CMP_kin_fam UMP- 26.7 27 0.00059 35.7 0.8 15 105-119 2-16 (183)
292 TIGR02788 VirB11 P-type DNA tr 26.5 39 0.00085 38.4 2.0 29 91-120 134-162 (308)
293 PF02534 T4SS-DNA_transf: Type 26.5 44 0.00096 39.8 2.6 22 103-126 45-66 (469)
294 cd01126 TraG_VirD4 The TraG/Tr 26.5 32 0.00068 40.1 1.3 21 105-127 2-22 (384)
295 PF08700 Vps51: Vps51/Vps67; 26.4 3.1E+02 0.0068 24.9 7.6 60 358-422 26-85 (87)
296 PF07106 TBPIP: Tat binding pr 26.1 3.1E+02 0.0066 28.5 8.4 18 360-377 81-98 (169)
297 PRK04296 thymidine kinase; Pro 26.1 24 0.00052 37.2 0.2 24 103-126 3-26 (190)
298 KOG2959 Transcriptional regula 26.1 48 0.001 35.7 2.4 54 951-1004 115-187 (238)
299 PRK15429 formate hydrogenlyase 26.0 36 0.00079 42.9 1.8 43 70-118 373-415 (686)
300 COG0419 SbcC ATPase involved i 25.8 48 0.001 43.3 2.9 22 104-125 27-55 (908)
301 KOG0250 DNA repair protein RAD 25.7 2E+02 0.0044 38.2 8.2 64 358-429 372-435 (1074)
302 TIGR03819 heli_sec_ATPase heli 25.7 41 0.00089 39.1 2.1 30 90-120 167-196 (340)
303 PRK10917 ATP-dependent DNA hel 25.7 48 0.001 42.0 2.8 22 99-120 279-300 (681)
304 TIGR02746 TraC-F-type type-IV 25.6 24 0.00052 45.1 0.1 21 102-122 430-450 (797)
305 cd01394 radB RadB. The archaea 25.5 46 0.001 35.2 2.3 29 92-120 6-37 (218)
306 PF10146 zf-C4H2: Zinc finger- 25.5 3E+02 0.0066 30.6 8.5 52 358-418 32-83 (230)
307 TIGR01389 recQ ATP-dependent D 25.3 44 0.00095 41.3 2.3 29 89-119 17-45 (591)
308 cd00464 SK Shikimate kinase (S 25.3 29 0.00063 34.2 0.6 16 104-119 1-16 (154)
309 PRK15424 propionate catabolism 25.2 39 0.00085 41.7 1.8 45 69-119 215-259 (538)
310 TIGR03744 traC_PFL_4706 conjug 25.2 24 0.00052 46.0 0.0 24 101-124 474-497 (893)
311 COG1125 OpuBA ABC-type proline 25.1 29 0.00063 39.3 0.6 13 107-119 32-44 (309)
312 PRK09361 radB DNA repair and r 25.1 53 0.0012 35.0 2.6 30 91-120 9-41 (225)
313 KOG3859 Septins (P-loop GTPase 25.1 45 0.00097 38.1 2.1 24 96-119 36-59 (406)
314 KOG1962 B-cell receptor-associ 25.0 2.4E+02 0.0051 31.2 7.4 60 362-427 131-190 (216)
315 KOG0354 DEAD-box like helicase 24.9 52 0.0011 42.0 2.8 27 90-119 67-93 (746)
316 PRK06995 flhF flagellar biosyn 24.7 29 0.00064 42.2 0.6 19 103-121 257-275 (484)
317 cd01428 ADK Adenylate kinase ( 24.7 31 0.00067 35.4 0.7 15 105-119 2-16 (194)
318 KOG2129 Uncharacterized conser 24.6 2E+02 0.0044 34.4 7.2 23 356-378 251-273 (552)
319 PF10481 CENP-F_N: Cenp-F N-te 24.5 2.9E+02 0.0063 31.5 8.1 23 355-377 106-128 (307)
320 cd01379 MYSc_type_III Myosin m 24.4 62 0.0013 40.9 3.4 35 84-119 68-103 (653)
321 PRK08118 topology modulation p 24.2 32 0.0007 35.6 0.7 14 105-118 4-17 (167)
322 TIGR02329 propionate_PrpR prop 24.2 39 0.00084 41.6 1.5 46 68-119 207-252 (526)
323 cd01393 recA_like RecA is a b 23.8 54 0.0012 34.7 2.4 30 91-120 5-37 (226)
324 KOG4196 bZIP transcription fac 23.8 3.3E+02 0.0072 27.9 7.5 32 394-425 87-118 (135)
325 PF08657 DASH_Spc34: DASH comp 23.7 1.7E+02 0.0038 33.0 6.3 83 317-414 168-258 (259)
326 cd01386 MYSc_type_XVIII Myosin 23.6 63 0.0014 41.6 3.3 35 84-119 68-103 (767)
327 TIGR02894 DNA_bind_RsfA transc 23.4 3.7E+02 0.0079 28.5 8.1 34 393-426 116-149 (161)
328 PRK11057 ATP-dependent DNA hel 23.2 48 0.001 41.3 2.1 27 91-119 31-57 (607)
329 PRK13767 ATP-dependent helicas 23.2 46 0.001 43.4 2.0 24 94-119 41-64 (876)
330 COG0630 VirB11 Type IV secreto 23.1 29 0.00064 39.7 0.2 18 103-120 144-161 (312)
331 COG2900 SlyX Uncharacterized p 23.1 5.6E+02 0.012 23.8 8.2 33 397-429 24-56 (72)
332 PF14389 Lzipper-MIP1: Leucine 23.1 4.5E+02 0.0098 24.9 8.0 29 389-417 55-83 (88)
333 TIGR02322 phosphon_PhnN phosph 23.0 33 0.00071 35.1 0.5 16 104-119 3-18 (179)
334 TIGR03007 pepcterm_ChnLen poly 23.0 7.1E+02 0.015 30.0 11.9 149 274-429 78-238 (498)
335 TIGR01313 therm_gnt_kin carboh 22.9 28 0.00062 35.0 0.1 14 105-118 1-14 (163)
336 cd02020 CMPK Cytidine monophos 22.9 36 0.00078 33.1 0.8 15 105-119 2-16 (147)
337 COG1126 GlnQ ABC-type polar am 22.8 33 0.00072 37.9 0.5 15 105-119 31-45 (240)
338 KOG2655 Septin family protein 22.8 2.9E+02 0.0064 32.8 8.1 23 97-119 16-38 (366)
339 PRK09039 hypothetical protein; 22.8 2.9E+02 0.0062 32.3 8.1 18 359-376 138-155 (343)
340 PRK10884 SH3 domain-containing 22.7 3.2E+02 0.007 29.8 7.9 32 392-423 136-167 (206)
341 cd01983 Fer4_NifH The Fer4_Nif 22.7 35 0.00076 30.0 0.6 17 105-121 2-18 (99)
342 TIGR02880 cbbX_cfxQ probable R 22.6 32 0.0007 38.7 0.4 16 104-119 60-75 (284)
343 TIGR03881 KaiC_arch_4 KaiC dom 22.6 55 0.0012 34.9 2.2 29 92-120 7-38 (229)
344 PRK15483 type III restriction- 22.6 87 0.0019 41.4 4.2 12 110-121 67-78 (986)
345 PRK11664 ATP-dependent RNA hel 22.5 59 0.0013 42.2 2.7 32 85-119 6-37 (812)
346 CHL00181 cbbX CbbX; Provisiona 22.4 34 0.00074 38.7 0.6 15 105-119 62-76 (287)
347 PRK08233 hypothetical protein; 22.4 35 0.00076 34.6 0.6 16 104-119 5-20 (182)
348 cd01124 KaiC KaiC is a circadi 22.4 37 0.00081 34.6 0.8 15 105-119 2-16 (187)
349 COG1382 GimC Prefoldin, chaper 22.2 4.6E+02 0.0099 26.5 8.2 42 387-428 69-110 (119)
350 PHA02624 large T antigen; Prov 22.1 47 0.001 41.7 1.6 30 92-121 419-450 (647)
351 PF00931 NB-ARC: NB-ARC domain 22.0 75 0.0016 34.7 3.1 30 90-119 5-36 (287)
352 PRK12726 flagellar biosynthesi 21.9 34 0.00074 40.7 0.4 21 103-123 207-227 (407)
353 PF03668 ATP_bind_2: P-loop AT 21.9 92 0.002 35.6 3.8 33 104-136 3-46 (284)
354 PF15188 CCDC-167: Coiled-coil 21.8 4.5E+02 0.0097 25.1 7.6 53 359-424 13-65 (85)
355 TIGR03817 DECH_helic helicase/ 21.8 51 0.0011 42.2 2.0 27 91-119 42-68 (742)
356 TIGR02688 conserved hypothetic 21.6 32 0.00069 41.4 0.1 36 99-136 208-252 (449)
357 COG3879 Uncharacterized protei 21.6 5.5E+02 0.012 29.0 9.5 81 329-427 23-107 (247)
358 PRK06217 hypothetical protein; 21.5 37 0.00081 35.2 0.6 14 105-118 4-17 (183)
359 PTZ00110 helicase; Provisional 21.4 53 0.0012 40.4 2.0 25 93-119 160-184 (545)
360 PF10923 DUF2791: P-loop Domai 21.4 73 0.0016 38.2 3.0 28 92-119 39-66 (416)
361 PRK13729 conjugal transfer pil 21.4 1.8E+02 0.004 35.5 6.3 15 360-374 78-92 (475)
362 TIGR03877 thermo_KaiC_1 KaiC d 21.3 63 0.0014 35.1 2.3 26 93-118 9-37 (237)
363 TIGR02397 dnaX_nterm DNA polym 21.3 66 0.0014 36.5 2.6 26 94-119 27-53 (355)
364 PF00485 PRK: Phosphoribulokin 21.3 33 0.00071 36.0 0.1 15 105-119 2-16 (194)
365 PF03193 DUF258: Protein of un 21.2 29 0.00063 36.3 -0.3 31 93-125 28-58 (161)
366 TIGR03238 dnd_assoc_3 dnd syst 21.2 51 0.0011 40.3 1.7 26 95-120 19-50 (504)
367 PRK14964 DNA polymerase III su 21.1 58 0.0013 39.9 2.2 41 71-119 11-52 (491)
368 PRK01172 ski2-like helicase; P 21.1 59 0.0013 40.9 2.3 24 94-119 31-54 (674)
369 PF02367 UPF0079: Uncharacteri 21.1 40 0.00086 33.8 0.7 33 89-123 4-36 (123)
370 PRK06305 DNA polymerase III su 21.0 66 0.0014 38.8 2.6 42 71-120 15-57 (451)
371 TIGR00231 small_GTP small GTP- 20.9 36 0.00077 32.2 0.3 16 104-119 3-18 (161)
372 cd02023 UMPK Uridine monophosp 20.9 36 0.00077 35.6 0.3 15 105-119 2-16 (198)
373 COG0464 SpoVK ATPases of the A 20.9 78 0.0017 38.2 3.2 36 100-135 274-332 (494)
374 smart00338 BRLZ basic region l 20.8 3.3E+02 0.0071 23.8 6.3 28 395-422 33-60 (65)
375 PF10392 COG5: Golgi transport 20.8 4.9E+02 0.011 26.1 8.3 46 331-377 7-52 (132)
376 PF14662 CCDC155: Coiled-coil 20.8 2.1E+02 0.0046 31.0 5.9 18 360-377 38-55 (193)
377 PRK05416 glmZ(sRNA)-inactivati 20.7 85 0.0018 35.8 3.2 17 104-120 8-24 (288)
378 TIGR00602 rad24 checkpoint pro 20.6 58 0.0013 41.1 2.1 17 104-120 112-128 (637)
379 cd00820 PEPCK_HprK Phosphoenol 20.6 43 0.00094 32.8 0.8 17 103-119 16-32 (107)
380 PRK14531 adenylate kinase; Pro 20.4 43 0.00093 34.8 0.8 16 104-119 4-19 (183)
381 TIGR03185 DNA_S_dndD DNA sulfu 20.4 2.8E+02 0.006 35.1 7.9 16 104-119 30-45 (650)
382 PRK14955 DNA polymerase III su 20.4 67 0.0015 37.9 2.5 40 71-119 14-55 (397)
383 cd00632 Prefoldin_beta Prefold 20.4 5.4E+02 0.012 24.7 8.2 39 388-426 63-101 (105)
384 PRK14970 DNA polymerase III su 20.4 74 0.0016 36.8 2.7 30 91-120 27-57 (367)
385 TIGR03263 guanyl_kin guanylate 20.3 41 0.00089 34.3 0.6 17 103-119 2-18 (180)
386 TIGR00643 recG ATP-dependent D 20.3 68 0.0015 40.2 2.6 19 101-119 255-273 (630)
387 PRK00300 gmk guanylate kinase; 20.3 43 0.00093 35.0 0.7 18 102-119 5-22 (205)
388 PRK10867 signal recognition pa 20.2 94 0.002 37.5 3.6 19 102-120 100-118 (433)
389 TIGR03689 pup_AAA proteasome A 20.2 41 0.00088 41.4 0.6 14 105-118 219-232 (512)
390 PRK11889 flhF flagellar biosyn 20.1 39 0.00085 40.5 0.4 18 103-120 242-259 (436)
391 TIGR01650 PD_CobS cobaltochela 20.0 58 0.0013 37.8 1.8 28 90-119 54-81 (327)
392 PRK14721 flhF flagellar biosyn 20.0 43 0.00093 40.2 0.7 19 102-120 191-209 (420)
No 1
>KOG0245 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.1e-86 Score=783.20 Aligned_cols=357 Identities=36% Similarity=0.551 Sum_probs=326.3
Q ss_pred CCCeEEEEEeCCCChhhhhcCCCcceEeeCCCEEEecCCcccccCCcCCceeecceeeCCC-------CChhhHHHhhHH
Q 001693 19 PERIFVSVRLRPLNEKEIARNDVSDWECINDSTIIYRNNLSVAERSMYPTSYTFDRVFSCD-------CTTRKVYEEGAK 91 (1027)
Q Consensus 19 ~e~I~V~VRVRPl~~~E~~~~~~~~~~~~~~~tii~~~~~~~~~rs~~~~sF~FD~VF~~~-------asQeeVYe~~v~ 91 (1027)
...|+|+|||||||.+|..+...+++.+.+..+.+.++... .....|+||+.||.. ++|.+||+.++.
T Consensus 3 ~ssv~VAVRVRPfn~rE~s~~~k~Vvqm~gn~ttii~~~~~-----k~~~~FtfD~SYWS~d~edPhfAsQ~qVYedlg~ 77 (1221)
T KOG0245|consen 3 GSSVKVAVRVRPFNAREKSRDAKCVVQMQGNTTTIINPKGS-----KDAPKFTFDYSYWSHDSEDPHFASQKQVYEDLGR 77 (1221)
T ss_pred CCceEEEEEeccchhhhhhcccceEEEecCCceeeecCCCc-----ccCCceecceeeecCCCCCCchhhHHHHHHHHhH
Confidence 34699999999999999999888888888777666654321 123359999999864 689999999999
Q ss_pred HHHHHHhcCCCeeEEEecccCCCCccccc--------CChhhHHHHHHHHHHhcc--ccceeEeeeeeEeeccccccccC
Q 001693 92 EVALAVVSGINSSVFAYGQTSSGKTYTMI--------GITEYTMSDIYDYIEKHK--EREFVLKFSAMEIYNESVRDLLS 161 (1027)
Q Consensus 92 plV~svL~G~NatIfAYGQTGSGKTyTM~--------GIi~rav~dLF~~Ie~~~--e~~f~V~vS~lEIYnE~V~DLL~ 161 (1027)
++++++++|||+||||||||||||||||+ ||||+++++||.+|...+ +..|.|.|||||||||+|+|||+
T Consensus 78 ~mL~~AfEGYN~ClFAYGQTGSGKSYTMMG~~~~~e~GIIPrlCEeLF~ri~~nq~~~~sy~VevSymEIYcErVrDLL~ 157 (1221)
T KOG0245|consen 78 EMLDHAFEGYNVCLFAYGQTGSGKSYTMMGFQEPDEPGIIPRLCEELFSRIADNQSQQMSYSVEVSYMEIYCERVRDLLN 157 (1221)
T ss_pred HHHHHHhcccceEEEEeccCCCCcceeeeccCCCCCCCchhHHHHHHHHHHhhcccccceEEEEEeehhHHHHHHHHHhh
Confidence 99999999999999999999999999998 699999999999998654 56899999999999999999999
Q ss_pred -CC-CCCceeecCCCCCeEecCCeeEEecCHHHHHHHHHHhhhhhccccccCCCcCCCceeEEEEEEEeecccccCCCCc
Q 001693 162 -AD-TSPLRLLDDPERGTIVEKLTEETLKDWNHLKELLSTCEAQRQIGETSLNETSSRSHQILRLTVESSACEFIGNDPS 239 (1027)
Q Consensus 162 -~~-~~~L~i~ed~~~g~~V~gLtev~V~S~ee~~~LL~~g~~~R~~~sT~~N~~SSRSH~IftI~Ve~~~~e~~g~~~s 239 (1027)
+. +.+|+++++|..|+||++|+.+.|.|+.++..++..|+++|++++|+||++|||||+||+|++.+...+..++..+
T Consensus 158 ~p~~kg~LRVREHP~lGPYVedLS~~aV~Sy~dI~~~md~GNkqRTtAATnMNdtSSRSHaVFtIvftQk~~~~~~~l~s 237 (1221)
T KOG0245|consen 158 APKSKGGLRVREHPILGPYVEDLSKLAVTSYADIQDLMDEGNKQRTTAATNMNDTSSRSHAVFTIVFTQKKHDQDTGLDS 237 (1221)
T ss_pred CCCCCCCceeeccCccChhHhHhhhcccccHHHHHHHHHhcchhhhhhhhccccccccceeEEEEEEEeeeccccCCCcc
Confidence 44 3589999999999999999999999999999999999999999999999999999999999999987766665566
Q ss_pred ceeeeEEEEecCCCccccccccchhhhhhhhhhhhhHHHHHHHHHHhcCC------CCCccccCCchhhhhhhhccCCCc
Q 001693 240 SLTATVNFVDLAGSERASQALSAGTRLKEGCHINRSLLTLGTVIRKLSKG------RNGHVPFRDSKLTRILQSSLGGNA 313 (1027)
Q Consensus 240 ~~~SkL~fVDLAGSER~skt~s~g~rlkEg~~INkSL~aLg~VI~aLs~~------k~~hIPYRDSKLTrLLqdSLGGNs 313 (1027)
..+|+|+|||||||||++.+++.|+|+|||.+||+||+|||+||.||++. ++.+||||||.|||||+++||||+
T Consensus 238 ek~SKIsLVDLAGSERasstGa~G~RLKEGa~INKSLtTLGkVISALAe~~~~k~~ks~fIPYRDSVLTWLLkEnLGGNS 317 (1221)
T KOG0245|consen 238 EKVSKISLVDLAGSERASSTGANGDRLKEGANINKSLTTLGKVISALAESQKGKKKKSDFIPYRDSVLTWLLKENLGGNS 317 (1221)
T ss_pred eeeeeeeEEeccCcccccccCCCccchhcccccchHHHHHHHHHHHHHHHhccCCCCCccccchHHHHHHHHHHhcCCcc
Confidence 88999999999999999999999999999999999999999999999742 345999999999999999999999
Q ss_pred cceeeeecCCCCcchHHHHHHHHHHHHhhcccccceeccccCHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 001693 314 RTAIICTLSPARSHVEQSRNTLLFASCAKEVTTNAQVNIVMSDKALVKHLQRELSRLENELRGSGPVF 381 (1027)
Q Consensus 314 kT~mIatISPs~~~~eETlsTLrFAsRAK~Ikn~~~vN~~~s~kalik~Lq~Ei~~Le~eL~~~~~~~ 381 (1027)
||+|||+|||+..||+|||+|||||+|||+|+|+|+||+.+..+ +|++|++|+.+|+..|+..+...
T Consensus 318 KTaMIAAlSPAdiNyeETLSTLRYAdRAK~Iv~~avVNEdpnaK-LIRELreEv~rLksll~~~~~~~ 384 (1221)
T KOG0245|consen 318 KTAMIAALSPADINYEETLSTLRYADRAKQIVNNAVVNEDPNAK-LIRELREEVARLKSLLRAQGLGD 384 (1221)
T ss_pred hhhhhhccChhhcChHHHHHHHHHhhHhhhhhccceeCCCccHH-HHHHHHHHHHHHHHHHhcccccc
Confidence 99999999999999999999999999999999999999998776 89999999999999998877554
No 2
>KOG0242 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.5e-85 Score=784.74 Aligned_cols=400 Identities=56% Similarity=0.797 Sum_probs=366.7
Q ss_pred CCCCeEEEEEeCCCChhhhhcCCCcceEeeCCCEEEecCCcccccCCcCCceeecceeeCCCCChhhHHHhhHHHHHHHH
Q 001693 18 CPERIFVSVRLRPLNEKEIARNDVSDWECINDSTIIYRNNLSVAERSMYPTSYTFDRVFSCDCTTRKVYEEGAKEVALAV 97 (1027)
Q Consensus 18 ~~e~I~V~VRVRPl~~~E~~~~~~~~~~~~~~~tii~~~~~~~~~rs~~~~sF~FD~VF~~~asQeeVYe~~v~plV~sv 97 (1027)
..++|.|+|||||++.++...++.++|.|.++.++.........+++. +..|.||+||+++++|++||+.+++|||++|
T Consensus 4 ~~~~i~V~vrvRP~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~-~~~y~FD~VF~~~~t~~~VYe~~tkpiv~~~ 82 (675)
T KOG0242|consen 4 TEEKILVSVRVRPLNEREDARGDRSDWHCINDTTLFKRVTKSLPEKSK-PEKYEFDRVFGEESTQEDVYERTTKPLLLSV 82 (675)
T ss_pred ccceeEEEEEeCCCCccccccCCccceEecCCceeEeecccccccccc-ccceeeeeecCCCCCHHHHHHhccHHHHHHH
Confidence 467899999999999998888999999999999988776543344433 6899999999999999999999999999999
Q ss_pred hcCCCeeEEEecccCCCCccccc------CChhhHHHHHHHHHHhccccceeEeeeeeEeeccccccccCCCCCCceeec
Q 001693 98 VSGINSSVFAYGQTSSGKTYTMI------GITEYTMSDIYDYIEKHKEREFVLKFSAMEIYNESVRDLLSADTSPLRLLD 171 (1027)
Q Consensus 98 L~G~NatIfAYGQTGSGKTyTM~------GIi~rav~dLF~~Ie~~~e~~f~V~vS~lEIYnE~V~DLL~~~~~~L~i~e 171 (1027)
+.|||+||||||||||||||||. ||+|+++.+||++|.+..++.|.|.|||+|||||.|+|||+++..++++++
T Consensus 83 l~G~N~TVFAYG~TgSGKTyTM~G~~~~PGii~la~~dif~~I~~~~~r~f~v~vSYlEIYNE~I~DLL~~~~~~L~irE 162 (675)
T KOG0242|consen 83 LEGFNATVFAYGQTGSGKTYTMSGSEDDPGIIPLAMKDIFEKIDKSGEREFSVRVSYLEIYNERIRDLLNPDGGDLRLRE 162 (675)
T ss_pred hcCcccceeeecCCCCCCceEEeccCCCCCeeehHHHHHHHHHHhcCCceeEEEEEEEEEeccccccccCCCCCCceEeE
Confidence 99999999999999999999998 578999999999999999999999999999999999999999999999999
Q ss_pred CCCCCeEecCCeeEEecCHHHHHHHHHHhhhhhccccccCCCcCCCceeEEEEEEEeecccccCCCCcceeeeEEEEecC
Q 001693 172 DPERGTIVEKLTEETLKDWNHLKELLSTCEAQRQIGETSLNETSSRSHQILRLTVESSACEFIGNDPSSLTATVNFVDLA 251 (1027)
Q Consensus 172 d~~~g~~V~gLtev~V~S~ee~~~LL~~g~~~R~~~sT~~N~~SSRSH~IftI~Ve~~~~e~~g~~~s~~~SkL~fVDLA 251 (1027)
|+.+|++|.||+++.|.++++++.+|..|+.+|+++.|.+|..|||||+||+|.|.+...... . ..++|+|||||
T Consensus 163 D~~~gi~V~gL~e~~v~s~e~~~~ll~~g~~~R~~g~T~~N~~SSRSHaIl~i~i~s~~~~~~----~-~~s~L~lIDLA 237 (675)
T KOG0242|consen 163 DSEGGIVVPGLTEETVSSREELLELLQKGNKNRTTGETNLNEQSSRSHAILRITVESRGREAS----S-RVSKLNLIDLA 237 (675)
T ss_pred cCCCCEEecCCeeecCCCHHHHHHHHHHhhccCcccccccccccchhhheeeEEEEecccccc----c-hhheehhhhhh
Confidence 999999999999999999999999999999999999999999999999999999998775432 2 67899999999
Q ss_pred CCccccccccchhhhhhhhhhhhhHHHHHHHHHHhcCC-CCCccccCCchhhhhhhhccCCCccceeeeecCCCCcchHH
Q 001693 252 GSERASQALSAGTRLKEGCHINRSLLTLGTVIRKLSKG-RNGHVPFRDSKLTRILQSSLGGNARTAIICTLSPARSHVEQ 330 (1027)
Q Consensus 252 GSER~skt~s~g~rlkEg~~INkSL~aLg~VI~aLs~~-k~~hIPYRDSKLTrLLqdSLGGNskT~mIatISPs~~~~eE 330 (1027)
||||++++++.|.|++||++||+||++||+||++|+++ ...||||||||||||||++|||||+|+|||||+|+..+++|
T Consensus 238 GSERas~T~~~G~RlkEG~~INrSLlaLgtVI~~Ls~~~~~~hipYRDSKLTRiLq~sLgGn~rt~~I~tisp~~~~~~e 317 (675)
T KOG0242|consen 238 GSERASRTGNEGVRLKEGAHINRSLLALGTVINKLSEGKRPRHIPYRDSKLTRLLQDSLGGNARTAIIATISPSSSHYEE 317 (675)
T ss_pred hhhhhhhhhccceeccccchhhHHHHHHHHHHHHHccccccCCCCccccHHHHhchhhcCCCccEEEEEEeCchhhHHHH
Confidence 99999999999999999999999999999999999998 56799999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcccccceeccccCHHHHHHHHHHHHHHHHHHHhcCCCCCCCcchhHHHHHHHHHHHHHH-HHHHHHHH
Q 001693 331 SRNTLLFASCAKEVTTNAQVNIVMSDKALVKHLQRELSRLENELRGSGPVFITPDSVSVLREKDLRIEKLE-KEVDELTM 409 (1027)
Q Consensus 331 TlsTLrFAsRAK~Ikn~~~vN~~~s~kalik~Lq~Ei~~Le~eL~~~~~~~~~~~~~~~l~ek~~~i~kle-~ei~eL~~ 409 (1027)
|.+||+||+|||.|++++.+|+++.++.+++.+++++..|+.++.......... ++....+..++ +++.++..
T Consensus 318 T~nTL~fAsrak~i~~~~~~n~~~~~~~~~~~~~~~i~~l~~e~~~~~~~~~~~------~~~~~~~~~~e~~~~~~~~~ 391 (675)
T KOG0242|consen 318 TKNTLKFASRAKEITTKAQVNVILSDKALLKYLQREIAELEAELERLKKKLEPE------REQELLIQKLEKEEVEELLP 391 (675)
T ss_pred HHHHHHHHHHhhhcccccccceecchhhhhHHHHHHHHHHHHHHHhhccccccc------hhhHHHHhHhhhhhHhhhhh
Confidence 999999999999999999999999999999999999999999998865442211 25666777888 88888888
Q ss_pred HHHHHHHHHHHHHHHhcCCC
Q 001693 410 QRDLARTEVENLLRGAGKGS 429 (1027)
Q Consensus 410 q~d~a~~~~~~l~~~~~~~~ 429 (1027)
+++.++...+.+........
T Consensus 392 ~~~~~~~~~~~~~~~~~~~~ 411 (675)
T KOG0242|consen 392 QRSEIQSLVELLKRLSASRR 411 (675)
T ss_pred hhhHHHHHHHHHhhhccccc
Confidence 88999888887777665543
No 3
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=5.1e-85 Score=783.16 Aligned_cols=398 Identities=35% Similarity=0.541 Sum_probs=344.4
Q ss_pred CCCCCCCeEEEEEeCCCChhhhhcCCCcceEeeC-CCEEEecCCcccccCCcCCceeecceeeCCCCChhhHHHhhHHHH
Q 001693 15 QSGCPERIFVSVRLRPLNEKEIARNDVSDWECIN-DSTIIYRNNLSVAERSMYPTSYTFDRVFSCDCTTRKVYEEGAKEV 93 (1027)
Q Consensus 15 ~~~~~e~I~V~VRVRPl~~~E~~~~~~~~~~~~~-~~tii~~~~~~~~~rs~~~~sF~FD~VF~~~asQeeVYe~~v~pl 93 (1027)
....+-+|+|+|||||++++|.......++.|.+ ..-|.+.... +.. .-.+.|+||+||+|.+.|++||+.++.|+
T Consensus 44 ~~e~~~NIqVivRcRp~n~~E~~~~s~~VVs~~~~~kEV~v~~~~--~sk-~~~k~ftFDkVFGpes~Q~d~Y~~~v~p~ 120 (1041)
T KOG0243|consen 44 HKEKEVNIQVIVRCRPRNDRERKSKSSVVVSCDGIRKEVAVRQTI--ASK-QIDKTFTFDKVFGPESQQEDLYDQAVSPI 120 (1041)
T ss_pred CCCCCCceEEEEEeCCCCchhhhcCCCeEEecCCCcceEEEeccc--ccc-cccceeecceeeCcchhHHHHHHHHHHHH
Confidence 3344579999999999999999888888999988 4446666553 221 13678999999999999999999999999
Q ss_pred HHHHhcCCCeeEEEecccCCCCccccc--------------CChhhHHHHHHHHHHhccccceeEeeeeeEeeccccccc
Q 001693 94 ALAVVSGINSSVFAYGQTSSGKTYTMI--------------GITEYTMSDIYDYIEKHKEREFVLKFSAMEIYNESVRDL 159 (1027)
Q Consensus 94 V~svL~G~NatIfAYGQTGSGKTyTM~--------------GIi~rav~dLF~~Ie~~~e~~f~V~vS~lEIYnE~V~DL 159 (1027)
|..|+.|||||||||||||+||||||. |||||++.+||+.++... .+|.|+|||+|+|||.++||
T Consensus 121 i~eVl~GyNCTIFAYGQTGTGKTyTMeG~~~~~~g~l~~~aGIIPRal~~IFd~Le~~~-~EYsvKVSfLELYNEEl~DL 199 (1041)
T KOG0243|consen 121 IKEVLEGYNCTIFAYGQTGTGKTYTMEGGERKKNGELPSEAGIIPRALRQIFDTLEAQG-AEYSVKVSFLELYNEELTDL 199 (1041)
T ss_pred HHHHhccCCceEEEecCCCCCceeeeecCcccccCCCCccCCcchHHHHHHHHHHHhcC-CeEEEEEEehhhhhHHHHHh
Confidence 999999999999999999999999997 699999999999998766 79999999999999999999
Q ss_pred cCCCCC---CceeecCC-----CCCeEecCCeeEEecCHHHHHHHHHHhhhhhccccccCCCcCCCceeEEEEEEEeecc
Q 001693 160 LSADTS---PLRLLDDP-----ERGTIVEKLTEETLKDWNHLKELLSTCEAQRQIGETSLNETSSRSHQILRLTVESSAC 231 (1027)
Q Consensus 160 L~~~~~---~L~i~ed~-----~~g~~V~gLtev~V~S~ee~~~LL~~g~~~R~~~sT~~N~~SSRSH~IftI~Ve~~~~ 231 (1027)
|+++.. .+++.+++ .+|++|.||.++.|.++.+++.+|.+|...|++++|.||..|||||+||+|+|.....
T Consensus 200 La~~~~~~~~~~~k~~~~~~~~kggV~vkGlEEi~V~~A~ei~klLekGs~kRrtAaTl~N~~SSRSHsIFsItvhike~ 279 (1041)
T KOG0243|consen 200 LASEDTSDKKLRIKDDSTIVDGKGGVIVKGLEEIIVTNADEIYKLLEKGSKKRRTAATLMNDQSSRSHSIFSITVHIKEN 279 (1041)
T ss_pred cCCccccccccccccCCcccCCcCcEEEecceeeeecchhHHHHHHHhhhhHhHHHHHHhhhhccccceEEEEEEEEecC
Confidence 987654 45555554 6899999999999999999999999999999999999999999999999999977654
Q ss_pred cccCCCCcceeeeEEEEecCCCccccccccchhhhhhhhhhhhhHHHHHHHHHHhcCCCCCccccCCchhhhhhhhccCC
Q 001693 232 EFIGNDPSSLTATVNFVDLAGSERASQALSAGTRLKEGCHINRSLLTLGTVIRKLSKGRNGHVPFRDSKLTRILQSSLGG 311 (1027)
Q Consensus 232 e~~g~~~s~~~SkL~fVDLAGSER~skt~s~g~rlkEg~~INkSL~aLg~VI~aLs~~k~~hIPYRDSKLTrLLqdSLGG 311 (1027)
... +..-...|+|+||||||||..+++|+.+.|.+|++.||+||+|||+||+||... .+|||||+|||||||||||||
T Consensus 280 t~~-geelvK~GKLNLVDLAGSENI~RSGA~~~RArEAG~INqSLLTLGRVInALVe~-s~HIPYRESKLTRLLQDSLGG 357 (1041)
T KOG0243|consen 280 TPE-GEELVKIGKLNLVDLAGSENISRSGARNGRAREAGEINQSLLTLGRVINALVEH-SGHIPYRESKLTRLLQDSLGG 357 (1041)
T ss_pred CCc-chhhHhhcccceeeccccccccccccccchhHHhhhhhHHHHHHHHHHHHHHcc-CCCCCchHHHHHHHHHHHhCC
Confidence 332 233378899999999999999999999999999999999999999999999985 569999999999999999999
Q ss_pred CccceeeeecCCCCcchHHHHHHHHHHHHhhcccccceeccccCHHHHHHHHHHHHHHHHHHHhcCCCC---CCCcchh-
Q 001693 312 NARTAIICTLSPARSHVEQSRNTLLFASCAKEVTTNAQVNIVMSDKALVKHLQRELSRLENELRGSGPV---FITPDSV- 387 (1027)
Q Consensus 312 NskT~mIatISPs~~~~eETlsTLrFAsRAK~Ikn~~~vN~~~s~kalik~Lq~Ei~~Le~eL~~~~~~---~~~~~~~- 387 (1027)
.+||+|||||||+..+++||++||.||.|||.|+|+|.+|..+..+.+++.|-.||.+|+.+|...+.. +++.+.+
T Consensus 358 kTKT~iIATiSPa~~~lEETlSTLEYA~RAKnIkNKPevNQkl~K~~llKd~~~EIerLK~dl~AaReKnGvyisee~y~ 437 (1041)
T KOG0243|consen 358 KTKTCIIATISPAKHNLEETLSTLEYAHRAKNIKNKPEVNQKLMKKTLLKDLYEEIERLKRDLAAAREKNGVYISEERYT 437 (1041)
T ss_pred CceeEEEEEeCCCcccHHHHHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhHhhCceEechHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999765433 2222222
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001693 388 ---SVLREKDLRIEKLEKEVDELTMQRDLARTEV 418 (1027)
Q Consensus 388 ---~~l~ek~~~i~kle~ei~eL~~q~d~a~~~~ 418 (1027)
....++..+|++++.++..++.++..+++.+
T Consensus 438 ~~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~ 471 (1041)
T KOG0243|consen 438 QEEKEKKEMAEQIEELEEELENLEKQLKDLTELY 471 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1234555666666666666555555554444
No 4
>PF11995 DUF3490: Domain of unknown function (DUF3490); InterPro: IPR021881 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 160 amino acids in length. This domain is found associated with PF00225 from PFAM. This domain is found associated with PF00225 from PFAM. This domain has two conserved sequence motifs: EVE and ESA.
Probab=100.00 E-value=5.5e-87 Score=654.53 Aligned_cols=160 Identities=69% Similarity=1.121 Sum_probs=158.3
Q ss_pred HHHHHHHHHHHHHhhcccceeeeeeeeeeecCCCCCceEEEEEeehhhhhHHhhccCCCCCCCCccccHHHHHHHHHHHH
Q 001693 851 EFKRLQREIIELWHACNVSLVHRTYFFLLFKGDPKDSIYMEVEQRRLSFLKDSFSRGNDAIEDGRTVSLASSMKALRRER 930 (1027)
Q Consensus 851 ~f~~~~~~IieLW~~C~vslvHRtyFfLlfkgd~~D~iymeve~rrl~~lk~~~~~~~~~~~~~~~~s~~ss~kal~~Er 930 (1027)
+||+||++||||||+|||||||||||||||||||+|+||||||+|||+|||++|++++++++|++++|++||+|||+|||
T Consensus 1 ~Fe~qq~~IIeLW~~C~VsLvHRTyFfLLFkGdpaD~iYmEVElRRLs~Lk~~fs~~~~~~~~~~~~s~~sS~kaL~rER 80 (161)
T PF11995_consen 1 EFERQQQEIIELWHACNVSLVHRTYFFLLFKGDPADSIYMEVELRRLSFLKETFSEGGQAAGGGHTLSLASSIKALRRER 80 (161)
T ss_pred ChHHHHHHHHHHHHhcCcchhhhhhhhheecCCcccceEEEeehHHHHHHHHHhccCCcccCCCCcccHHHHHHHHHHHH
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCHHHHHHHHHhhCcCCCCcchhhHHhhhcCCcc-chhhHHHHHHHHHHHhcccCCCchhhhhhccccCC
Q 001693 931 HMLSQHVKKRFSREQRENLFLKWGIGLQTKHRSLQLAHLLWTSK-DLNHVAESAAIVSKLVTFVKPDQAFREMFGLNFAP 1009 (1027)
Q Consensus 931 ~~l~k~~~~rl~~~ere~ly~kwgi~l~~k~rrlql~~~lWt~~-d~~hv~eSa~~Vaklv~~~~~~~~~kemf~l~f~~ 1009 (1027)
+||||||++||+++|||+||.||||||+||||||||||+|||+| ||+||+|||+||||||||||||+|+||||||||+|
T Consensus 81 ~~L~k~m~~rls~eere~ly~kWgI~l~sK~RrlQL~~~LWt~~~d~~Hv~eSA~lVAkLvgf~e~g~~~KEMFgLnF~~ 160 (161)
T PF11995_consen 81 EMLAKQMQKRLSREEREELYKKWGIPLDSKQRRLQLANRLWTDTKDMEHVRESAELVAKLVGFVEPGQASKEMFGLNFTP 160 (161)
T ss_pred HHHHHHHHHhCCHHHHHHHHHhcCCCCcchHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhccccccHHHHHccCCCC
Confidence 99999999999999999999999999999999999999999999 99999999999999999999999999999999998
Q ss_pred C
Q 001693 1010 R 1010 (1027)
Q Consensus 1010 ~ 1010 (1027)
|
T Consensus 161 ~ 161 (161)
T PF11995_consen 161 P 161 (161)
T ss_pred C
Confidence 6
No 5
>KOG4280 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.2e-84 Score=753.67 Aligned_cols=356 Identities=42% Similarity=0.607 Sum_probs=321.6
Q ss_pred CCCeEEEEEeCCCChhhhhcCCCcceEeeCCC-EEEecCCcccccCCcCCceeecceeeCCCCChhhHHHhhHHHHHHHH
Q 001693 19 PERIFVSVRLRPLNEKEIARNDVSDWECINDS-TIIYRNNLSVAERSMYPTSYTFDRVFSCDCTTRKVYEEGAKEVALAV 97 (1027)
Q Consensus 19 ~e~I~V~VRVRPl~~~E~~~~~~~~~~~~~~~-tii~~~~~~~~~rs~~~~sF~FD~VF~~~asQeeVYe~~v~plV~sv 97 (1027)
..+|+|+||+||++..+...+....+.+.... .+...++. ......++.|+||.||+++++|++||..++.|+|++|
T Consensus 4 ~~~v~vvvr~rPl~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~ftfD~vf~~~stQ~dvy~~~~~~lV~sv 81 (574)
T KOG4280|consen 4 ACKVKVVVRVRPLSAAERSELLKSILSVDPAHGRVSLKNPV--AGIEGKPKSFTFDAVFDSDSTQDDVYQETVAPLVESV 81 (574)
T ss_pred ccceeEEEeecCCCchhhhhhhccccccccccceeeecCCc--ccccCCCCCceeeeeecCCCCHHHHHHHHhHHHHHHH
Confidence 56899999999999988877766655554433 33333332 1222346789999999999999999999999999999
Q ss_pred hcCCCeeEEEecccCCCCccccc-------CChhhHHHHHHHHHHhccc-cceeEeeeeeEeeccccccccCCCC-CCce
Q 001693 98 VSGINSSVFAYGQTSSGKTYTMI-------GITEYTMSDIYDYIEKHKE-REFVLKFSAMEIYNESVRDLLSADT-SPLR 168 (1027)
Q Consensus 98 L~G~NatIfAYGQTGSGKTyTM~-------GIi~rav~dLF~~Ie~~~e-~~f~V~vS~lEIYnE~V~DLL~~~~-~~L~ 168 (1027)
++|||+||||||||||||||||. ||+|+++.+||.+|...++ ..|.|+|||+|||||.|+|||++.. ..+.
T Consensus 82 l~GyNgtvFaYGQTGsGKTyTM~G~~~~~~GiiPraf~~LF~~I~~~~~~~~f~vrvS~lEiYnE~i~DLL~~~~~~~l~ 161 (574)
T KOG4280|consen 82 LEGYNGTVFAYGQTGSGKTYTMIGPDPELRGLIPRAFEHLFRHIDERKEKTRFLVRVSYLEIYNESIRDLLSPVNPKGLE 161 (574)
T ss_pred hcccCceEEEeccCCCCCceEeeCCChhhCCchhHHHHHHHHHHHhccccceEEEEeehHHHHhHHHHHHhCccCcCCce
Confidence 99999999999999999999997 6899999999999998764 4699999999999999999999988 5899
Q ss_pred eecCCCCCeEecCCeeEEecCHHHHHHHHHHhhhhhccccccCCCcCCCceeEEEEEEEeecccccCCCCcceeeeEEEE
Q 001693 169 LLDDPERGTIVEKLTEETLKDWNHLKELLSTCEAQRQIGETSLNETSSRSHQILRLTVESSACEFIGNDPSSLTATVNFV 248 (1027)
Q Consensus 169 i~ed~~~g~~V~gLtev~V~S~ee~~~LL~~g~~~R~~~sT~~N~~SSRSH~IftI~Ve~~~~e~~g~~~s~~~SkL~fV 248 (1027)
+++++..|+||+||+++.|.++++++.+|..|.++|.+++|.||..|||||+||+|+|++... ..++......|+|+||
T Consensus 162 lre~p~~Gv~V~nlse~~v~s~~d~~~~l~~G~~nR~vgat~mn~~SsRSH~ift~~i~~~~~-~~~~~~~~~~~rlnlv 240 (574)
T KOG4280|consen 162 LREDPKCGVYVENLSEMDVESAEDAQQLLVVGLANRRVGATSMNEESSRSHAIFTIHIESSEK-SDGGLMSGRSSKLNLV 240 (574)
T ss_pred eeEcCCCceEecCcceeecCCHHHHHHHHHHHHhhcchhhccCCcccccceEEEEEEEEeecc-cCCCccccccceeeee
Confidence 999999999999999999999999999999999999999999999999999999999998321 2334455789999999
Q ss_pred ecCCCccccccccchhhhhhhhhhhhhHHHHHHHHHHhcCCCCCccccCCchhhhhhhhccCCCccceeeeecCCCCcch
Q 001693 249 DLAGSERASQALSAGTRLKEGCHINRSLLTLGTVIRKLSKGRNGHVPFRDSKLTRILQSSLGGNARTAIICTLSPARSHV 328 (1027)
Q Consensus 249 DLAGSER~skt~s~g~rlkEg~~INkSL~aLg~VI~aLs~~k~~hIPYRDSKLTrLLqdSLGGNskT~mIatISPs~~~~ 328 (1027)
|||||||.+++++.|.+++|+.+||+||++||+||.+|++++++||||||||||+||||||||||+|+|||||+|+..++
T Consensus 241 DLagsEr~~~tga~G~rlkEa~~IN~SLs~LG~vI~aLvd~~~~HIPYRdSkLT~LLqdSLGGN~kT~mianvsp~~~~~ 320 (574)
T KOG4280|consen 241 DLAGSERQSKTGAEGERLKEATNINLSLSALGNVISALVDGSKTHIPYRDSKLTRLLQDSLGGNSKTTMIANVSPSSDNY 320 (574)
T ss_pred eccchhhhcccCccchhhhhhcccchhHHHHHHHHHHHhccccCCCCcchhHHHHHHHHHcCCCceEEEEEecCchhhhh
Confidence 99999999999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcccccceeccccCHHHHHHHHHHHHHHHHHHHhcCC
Q 001693 329 EQSRNTLLFASCAKEVTTNAQVNIVMSDKALVKHLQRELSRLENELRGSG 378 (1027)
Q Consensus 329 eETlsTLrFAsRAK~Ikn~~~vN~~~s~kalik~Lq~Ei~~Le~eL~~~~ 378 (1027)
+||++||+||+|||.|+|+|.+|+++. .++++.||++|++|+.+|...+
T Consensus 321 ~ETlsTLrfA~Rak~I~nk~~ined~~-~~~~~~lq~ei~~Lk~~l~~~~ 369 (574)
T KOG4280|consen 321 EETLSTLRFAQRAKAIKNKPVINEDPK-DALLRELQEEIERLKKELDPGG 369 (574)
T ss_pred HHHHHHHHHHHHHHHhhccccccCCcc-hhhHHHHHHHHHHHHHhhcccc
Confidence 999999999999999999999998876 4689999999999999987643
No 6
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=100.00 E-value=3e-79 Score=692.94 Aligned_cols=399 Identities=35% Similarity=0.505 Sum_probs=338.4
Q ss_pred CCCCeEEEEEeCCCChhhhhcCCCcceEeeC-CCEEEecCCcccccCCcCCceeecceeeCCCCChhhHHHhhHHHHHHH
Q 001693 18 CPERIFVSVRLRPLNEKEIARNDVSDWECIN-DSTIIYRNNLSVAERSMYPTSYTFDRVFSCDCTTRKVYEEGAKEVALA 96 (1027)
Q Consensus 18 ~~e~I~V~VRVRPl~~~E~~~~~~~~~~~~~-~~tii~~~~~~~~~rs~~~~sF~FD~VF~~~asQeeVYe~~v~plV~s 96 (1027)
.+.+|+|+||+||++..|...++..+....+ ..++.+..+ .+.+.|.||+||.|+++|++||+.++.|+|++
T Consensus 5 ~~~~IkV~cR~rP~n~~E~~~~~~~i~~~~~~~~~v~~~~~-------~~~~~y~FDrVF~pnatQe~Vy~~~a~~Iv~d 77 (607)
T KOG0240|consen 5 AECSIKVVCRFRPLNGLENNLGSKFIDCFENGENTVVLETT-------KETKTYVFDRVFSPNATQEDVYEFAAKPIVDD 77 (607)
T ss_pred CCCceEEEEEeecCCchhhhcCCcCccCCCCCcceEEEecc-------cccccceeeeecCCCccHHHHHHHHHHHHHHH
Confidence 5678999999999999998776654443334 445544322 23468999999999999999999999999999
Q ss_pred HhcCCCeeEEEecccCCCCccccc---------CChhhHHHHHHHHHHhccc-cceeEeeeeeEeeccccccccCCCCCC
Q 001693 97 VVSGINSSVFAYGQTSSGKTYTMI---------GITEYTMSDIYDYIEKHKE-REFVLKFSAMEIYNESVRDLLSADTSP 166 (1027)
Q Consensus 97 vL~G~NatIfAYGQTGSGKTyTM~---------GIi~rav~dLF~~Ie~~~e-~~f~V~vS~lEIYnE~V~DLL~~~~~~ 166 (1027)
||.|||+||||||||||||||||. ||+||++++||++|....+ ..|.|+|||||||+|+|+|||++.+.+
T Consensus 78 VL~GYNGTvfaYGqT~sGKTytm~G~~~d~~~~GIipRi~~diF~~Iys~~~n~efhVkVsy~EIYmEKi~DLL~~~k~n 157 (607)
T KOG0240|consen 78 VLLGYNGTVFAYGQTGSGKTYTMEGIGHDPEEMGIIPRILNDIFDHIYSMEENLEFHVKVSYFEIYMEKIRDLLDPEKTN 157 (607)
T ss_pred HhcccceeEEEecCCCCCcceeecccCCChhhcCcHHHHHHHHHHHHhcCcccceEEEEEEeehhhhhHHHHHhCcccCC
Confidence 999999999999999999999996 7999999999999998664 689999999999999999999999999
Q ss_pred ceeecCCCCCeEecCCeeEEecCHHHHHHHHHHhhhhhccccccCCCcCCCceeEEEEEEEeecccccCCCCcceeeeEE
Q 001693 167 LRLLDDPERGTIVEKLTEETLKDWNHLKELLSTCEAQRQIGETSLNETSSRSHQILRLTVESSACEFIGNDPSSLTATVN 246 (1027)
Q Consensus 167 L~i~ed~~~g~~V~gLtev~V~S~ee~~~LL~~g~~~R~~~sT~~N~~SSRSH~IftI~Ve~~~~e~~g~~~s~~~SkL~ 246 (1027)
+.+++|...+++|+|+++..|.++++++++++.|..+|+++.|.||.+|||||.||+|+|.+.+.+ ......|+|+
T Consensus 158 lsvheDK~~v~~vkG~t~~~v~s~d~v~~~i~~g~~nr~va~t~mn~~sSRSHsIF~i~VkQ~n~e----~~~~~~gkLy 233 (607)
T KOG0240|consen 158 LSVHEDKNRVPYVKGVTERFVSSPDEVLDVIDEGKSNRHVAVTNMNEHSSRSHSIFLIHVKQENVE----DKRKLSGKLY 233 (607)
T ss_pred ceeecccCCCceecCceeEEecCHHHHHHHHhcccccchhhhccccccccccceEEEEEEEecccc----chhhccccEE
Confidence 999999999999999999999999999999999999999999999999999999999999998753 3336889999
Q ss_pred EEecCCCccccccccchhhhhhhhhhhhhHHHHHHHHHHhcCCCCCccccCCchhhhhhhhccCCCccceeeeecCCCCc
Q 001693 247 FVDLAGSERASQALSAGTRLKEGCHINRSLLTLGTVIRKLSKGRNGHVPFRDSKLTRILQSSLGGNARTAIICTLSPARS 326 (1027)
Q Consensus 247 fVDLAGSER~skt~s~g~rlkEg~~INkSL~aLg~VI~aLs~~k~~hIPYRDSKLTrLLqdSLGGNskT~mIatISPs~~ 326 (1027)
||||||||+.+++++.|.-+.|+++||+||.|||+||++|+.+...|||||||||||||||+|||||||.||+|++|+..
T Consensus 234 LVDLaGSEkvsKtga~g~vleEaK~INkSLsaLgnvI~aLa~g~~shipYRDSKLTRILqdSLGGNsRTtlIi~csPss~ 313 (607)
T KOG0240|consen 234 LVDLAGSEKVSKTGAEGAVLEEAKNINKSLSALGNVINALAEGPKSHIPYRDSKLTRILQDSLGGNSRTTLIICCSPSSL 313 (607)
T ss_pred EEEcccccccCCCCccchhHHHHhhhhhhHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhCCCcceEEEEecCCccc
Confidence 99999999999999999999999999999999999999999998899999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHhhcccccceeccccCHHHHHHHHHHH----------HHHHHHHHhcCCCCCCC-cch---------
Q 001693 327 HVEQSRNTLLFASCAKEVTTNAQVNIVMSDKALVKHLQRE----------LSRLENELRGSGPVFIT-PDS--------- 386 (1027)
Q Consensus 327 ~~eETlsTLrFAsRAK~Ikn~~~vN~~~s~kalik~Lq~E----------i~~Le~eL~~~~~~~~~-~~~--------- 386 (1027)
+..||.+||+|+.|||.|+|.+.+|...+.++..+.|..+ ++.++..|......... .+.
T Consensus 314 n~~ET~STl~fg~rak~ikN~v~~n~e~~~e~~~r~~e~~kd~~~~~~~~~~~~~~sl~~~~~~E~~~~de~~~~~~~~k 393 (607)
T KOG0240|consen 314 NEAETKSTLRFGNRAKTIKNTVWVNLELTAEEWKRKLEKKKDKNVALKEELEKLRNSLKRWRNGEEVKEDEDFSLKEEAK 393 (607)
T ss_pred cccccccchhhccccccccchhhhhhHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhcccCcccchhhhhHHHHHH
Confidence 9999999999999999999999999988877666555443 33333343322211100 000
Q ss_pred -----------hHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 001693 387 -----------VSVLRE-KDLRIEKLEKEVDELTMQRDLARTEVENLLRGAGK 427 (1027)
Q Consensus 387 -----------~~~l~e-k~~~i~kle~ei~eL~~q~d~a~~~~~~l~~~~~~ 427 (1027)
...+.. .+.....++++++.|..|+|....+++...+...+
T Consensus 394 ~~~~~~~~~~~i~~~~~~~~~~~~~~~e~~~~L~qqlD~kd~~~n~~sqL~~~ 446 (607)
T KOG0240|consen 394 MSAILSEEEMSITKLKGSLEEEEDILTERIESLYQQLDQKDDQINKQSQLMEK 446 (607)
T ss_pred hhhhhhhhhhhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000000 12345567888888888888888777665554444
No 7
>PLN03188 kinesin-12 family protein; Provisional
Probab=100.00 E-value=2.5e-78 Score=730.96 Aligned_cols=345 Identities=37% Similarity=0.582 Sum_probs=306.9
Q ss_pred CCCeEEEEEeCCCChhhhhcCCCcceEeeCCCEEEecCCcccccCCcCCceeecceeeCCCCChhhHHHhhHHHHHHHHh
Q 001693 19 PERIFVSVRLRPLNEKEIARNDVSDWECINDSTIIYRNNLSVAERSMYPTSYTFDRVFSCDCTTRKVYEEGAKEVALAVV 98 (1027)
Q Consensus 19 ~e~I~V~VRVRPl~~~E~~~~~~~~~~~~~~~tii~~~~~~~~~rs~~~~sF~FD~VF~~~asQeeVYe~~v~plV~svL 98 (1027)
..+|+|+|||||++..|. +...++. ..+.++.+. .+.|.||+||+++++|++||+.++.|+|++++
T Consensus 97 ds~VkV~VRVRPl~~~E~--g~~iV~~-~s~dsl~I~-----------~qtFtFD~VFdp~aTQedVFe~vv~PLV~svL 162 (1320)
T PLN03188 97 DSGVKVIVRMKPLNKGEE--GEMIVQK-MSNDSLTIN-----------GQTFTFDSIADPESTQEDIFQLVGAPLVENCL 162 (1320)
T ss_pred CCCeEEEEEcCCCCCccC--CCeeEEE-cCCCeEEEe-----------CcEEeCCeeeCCCCCHHHHHHHHHHHHHHHHh
Confidence 569999999999998763 3333333 334444432 25799999999999999999999999999999
Q ss_pred cCCCeeEEEecccCCCCccccc----------------CChhhHHHHHHHHHHhc------cccceeEeeeeeEeecccc
Q 001693 99 SGINSSVFAYGQTSSGKTYTMI----------------GITEYTMSDIYDYIEKH------KEREFVLKFSAMEIYNESV 156 (1027)
Q Consensus 99 ~G~NatIfAYGQTGSGKTyTM~----------------GIi~rav~dLF~~Ie~~------~e~~f~V~vS~lEIYnE~V 156 (1027)
+|||+||||||||||||||||+ ||+||++++||..|... ....|.|+|||+|||||+|
T Consensus 163 dGyNaTIFAYGQTGSGKTYTM~G~~~~~~de~~s~~e~GIIPRaledLF~~I~e~q~k~~d~~~~y~V~vSyLEIYNEkI 242 (1320)
T PLN03188 163 AGFNSSVFAYGQTGSGKTYTMWGPANGLLEEHLSGDQQGLTPRVFERLFARINEEQIKHADRQLKYQCRCSFLEIYNEQI 242 (1320)
T ss_pred cCCcceeecCCCCCCCCCEeeCCCCCcccccccccccCCchHHHHHHHHHHHHhhhhhccccccceEEEEEEEeeecCcc
Confidence 9999999999999999999996 58999999999999753 2457999999999999999
Q ss_pred ccccCCCCCCceeecCCCCCeEecCCeeEEecCHHHHHHHHHHhhhhhccccccCCCcCCCceeEEEEEEEeecccccCC
Q 001693 157 RDLLSADTSPLRLLDDPERGTIVEKLTEETLKDWNHLKELLSTCEAQRQIGETSLNETSSRSHQILRLTVESSACEFIGN 236 (1027)
Q Consensus 157 ~DLL~~~~~~L~i~ed~~~g~~V~gLtev~V~S~ee~~~LL~~g~~~R~~~sT~~N~~SSRSH~IftI~Ve~~~~e~~g~ 236 (1027)
||||++....+.+++++.+|++|.||+++.|.+++++..+|..|..+|++++|.+|..|||||+||+|+|++.......+
T Consensus 243 ~DLLsp~~k~L~IRED~kgGv~VeGLTEv~V~S~ED~l~LL~~G~~nR~tasT~mN~~SSRSHaIFtI~Ves~~k~~~dg 322 (1320)
T PLN03188 243 TDLLDPSQKNLQIREDVKSGVYVENLTEEYVKTMKDVTQLLIKGLSNRRTGATSINAESSRSHSVFTCVVESRCKSVADG 322 (1320)
T ss_pred eeccccccCCceEEEcCCCCeEeCCCeEEeCCCHHHHHHHHHHHhccceeccCCCCCccCCCceeEEEEEEEeecccCCC
Confidence 99999988899999999999999999999999999999999999999999999999999999999999998765433333
Q ss_pred CCcceeeeEEEEecCCCccccccccchhhhhhhhhhhhhHHHHHHHHHHhcC----CCCCccccCCchhhhhhhhccCCC
Q 001693 237 DPSSLTATVNFVDLAGSERASQALSAGTRLKEGCHINRSLLTLGTVIRKLSK----GRNGHVPFRDSKLTRILQSSLGGN 312 (1027)
Q Consensus 237 ~~s~~~SkL~fVDLAGSER~skt~s~g~rlkEg~~INkSL~aLg~VI~aLs~----~k~~hIPYRDSKLTrLLqdSLGGN 312 (1027)
......|+|+|||||||||...+++.|.+++|+++||+||++||+||.+|+. ++..||||||||||+||||+||||
T Consensus 323 ~ss~r~SkLnLVDLAGSER~kkTga~G~RLkEA~~INKSLsaLGnVI~ALae~Sq~gk~~HIPYRDSKLTrLLQDSLGGN 402 (1320)
T PLN03188 323 LSSFKTSRINLVDLAGSERQKLTGAAGDRLKEAGNINRSLSQLGNLINILAEISQTGKQRHIPYRDSRLTFLLQESLGGN 402 (1320)
T ss_pred CcceEEEEEEEEECCCchhccccCcccHHHHHHHHHhHHHHHHHHHHHHHHHhhccCCCCcCCCCcchHHHHHHHhcCCC
Confidence 3345789999999999999999999999999999999999999999999974 355799999999999999999999
Q ss_pred ccceeeeecCCCCcchHHHHHHHHHHHHhhcccccceeccccCH-----HHHHHHHHHHHHHHHHHHhcC
Q 001693 313 ARTAIICTLSPARSHVEQSRNTLLFASCAKEVTTNAQVNIVMSD-----KALVKHLQRELSRLENELRGS 377 (1027)
Q Consensus 313 skT~mIatISPs~~~~eETlsTLrFAsRAK~Ikn~~~vN~~~s~-----kalik~Lq~Ei~~Le~eL~~~ 377 (1027)
|+|+|||||||+..+++||++||+||+|||.|+|+|++|..+.+ ..+|++|++|+.+|+.+...+
T Consensus 403 SKTvMIa~VSPs~~~~eETLSTLrFAsRAK~IKNkpvvNe~~~~~vn~LrelIr~Lk~EL~rLK~~~~~p 472 (1320)
T PLN03188 403 AKLAMVCAISPSQSCKSETFSTLRFAQRAKAIKNKAVVNEVMQDDVNFLREVIRQLRDELQRVKANGNNP 472 (1320)
T ss_pred ceEEEEEecCCchhhHHHHHHHHHHHHHHhhcCccceeccchhhhHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999987644 347888889999988886544
No 8
>cd01370 KISc_KIP3_like Kinesin motor domain, KIP3-like subgroup. The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a sec
Probab=100.00 E-value=2.4e-76 Score=661.01 Aligned_cols=323 Identities=43% Similarity=0.668 Sum_probs=297.3
Q ss_pred CeEEEEEeCCCChhhhhcCCCcceEeeCCCEEEecCCcccc------cCCcCCceeecceeeCCCCChhhHHHhhHHHHH
Q 001693 21 RIFVSVRLRPLNEKEIARNDVSDWECINDSTIIYRNNLSVA------ERSMYPTSYTFDRVFSCDCTTRKVYEEGAKEVA 94 (1027)
Q Consensus 21 ~I~V~VRVRPl~~~E~~~~~~~~~~~~~~~tii~~~~~~~~------~rs~~~~sF~FD~VF~~~asQeeVYe~~v~plV 94 (1027)
+|+|+|||||+++.|...+...+|.+.++.++++.+..... .....++.|.||+||+++++|++||+.+++|+|
T Consensus 1 ~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~f~Fd~vf~~~~~q~~vf~~~~~plv 80 (338)
T cd01370 1 SLTVAVRVRPFNEKEKQEGTRRVVKVVDDRMLVFDPKDEEDAFRNLRARRNKELKYSFDRVFDETSTQEEVYENTTKPLV 80 (338)
T ss_pred CeEEEEEcCCCChhhhhcCCceEEEEcCCCEEEEcCCcccccccchhcccCCceEEEeccccCCCCCHHHHHHHHHHHHH
Confidence 59999999999999998888999999998888776543111 123346799999999999999999999999999
Q ss_pred HHHhcCCCeeEEEecccCCCCccccc------CChhhHHHHHHHHHHhcc-ccceeEeeeeeEeeccccccccCCCCCCc
Q 001693 95 LAVVSGINSSVFAYGQTSSGKTYTMI------GITEYTMSDIYDYIEKHK-EREFVLKFSAMEIYNESVRDLLSADTSPL 167 (1027)
Q Consensus 95 ~svL~G~NatIfAYGQTGSGKTyTM~------GIi~rav~dLF~~Ie~~~-e~~f~V~vS~lEIYnE~V~DLL~~~~~~L 167 (1027)
+++++|||+||||||||||||||||+ ||+|+++++||+.++... ...|.|++||+|||||+|+|||++...++
T Consensus 81 ~~~~~G~n~~i~ayGqtGSGKTyTm~G~~~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIyne~v~DLL~~~~~~l 160 (338)
T cd01370 81 DGVLNGYNATVFAYGATGAGKTHTMLGTDSDPGLMVLTMKDLFDKIEERKDDKEFEVSLSYLEIYNETIRDLLSPSSGPL 160 (338)
T ss_pred HHHHCCCCceEEeeCCCCCCCeEEEcCCCCCCchHHHHHHHHHHhhhhcccCceEEEEEEEEEEECCEEEECCCCCCCCc
Confidence 99999999999999999999999997 599999999999998776 67899999999999999999999988899
Q ss_pred eeecCCCCCeEecCCeeEEecCHHHHHHHHHHhhhhhccccccCCCcCCCceeEEEEEEEeecccccCCCCcceeeeEEE
Q 001693 168 RLLDDPERGTIVEKLTEETLKDWNHLKELLSTCEAQRQIGETSLNETSSRSHQILRLTVESSACEFIGNDPSSLTATVNF 247 (1027)
Q Consensus 168 ~i~ed~~~g~~V~gLtev~V~S~ee~~~LL~~g~~~R~~~sT~~N~~SSRSH~IftI~Ve~~~~e~~g~~~s~~~SkL~f 247 (1027)
.+++++.++++|.|++++.|.++++++++|..|.++|++++|.+|..|||||+||+|+|.+...... .......|+|+|
T Consensus 161 ~i~ed~~~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~i~i~~~~~~~~-~~~~~~~s~l~~ 239 (338)
T cd01370 161 ELREDPNQGIVVAGLTEHQPKSAEEILELLMKGNRNRTQEPTEANATSSRSHAVLQITVRQKDRTAS-INQQVRIGKLSL 239 (338)
T ss_pred eEEEcCCCCEEeCCcEEEEeCCHHHHHHHHHHHHhhcccccccccCccCcceEEEEEEEEEEecCCC-CCCcEEEEEEEE
Confidence 9999999999999999999999999999999999999999999999999999999999988764311 123367899999
Q ss_pred EecCCCccccccccchhhhhhhhhhhhhHHHHHHHHHHhcCCC--CCccccCCchhhhhhhhccCCCccceeeeecCCCC
Q 001693 248 VDLAGSERASQALSAGTRLKEGCHINRSLLTLGTVIRKLSKGR--NGHVPFRDSKLTRILQSSLGGNARTAIICTLSPAR 325 (1027)
Q Consensus 248 VDLAGSER~skt~s~g~rlkEg~~INkSL~aLg~VI~aLs~~k--~~hIPYRDSKLTrLLqdSLGGNskT~mIatISPs~ 325 (1027)
||||||||..+++..|.+++|+.+||+||++|++||.+|+.+. ..||||||||||+||+|+|||||+|+|||||||+.
T Consensus 240 VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~~L~~~~~~~~~ipyR~SkLT~lL~d~Lggn~~t~~I~~vsp~~ 319 (338)
T cd01370 240 IDLAGSERASATNNRGQRLKEGANINRSLLALGNCINALVDGKKKNKHIPYRDSKLTRLLKDSLGGNCKTVMIANISPSS 319 (338)
T ss_pred EECCCCccccccCCCCccccccchhhHHHHHHHHHHHHHHhccCCCCcCCCcCCHHHHHHHHhcCCCCeEEEEEEeCCch
Confidence 9999999999999999999999999999999999999999876 37999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHhhcc
Q 001693 326 SHVEQSRNTLLFASCAKEV 344 (1027)
Q Consensus 326 ~~~eETlsTLrFAsRAK~I 344 (1027)
.+++||++||+||+|||+|
T Consensus 320 ~~~~eTl~TL~fa~ra~~I 338 (338)
T cd01370 320 SHYEETHNTLKYANRAKNI 338 (338)
T ss_pred hhHHHHHHHHHHHHHhccC
Confidence 9999999999999999986
No 9
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=3.1e-76 Score=681.88 Aligned_cols=360 Identities=34% Similarity=0.551 Sum_probs=328.6
Q ss_pred CCCeEEEEEeCCCChhhhhcCCCcceEeeCCCEEEecCCc-ccccCCcCCceeecceeeCCC-------CChhhHHHhhH
Q 001693 19 PERIFVSVRLRPLNEKEIARNDVSDWECINDSTIIYRNNL-SVAERSMYPTSYTFDRVFSCD-------CTTRKVYEEGA 90 (1027)
Q Consensus 19 ~e~I~V~VRVRPl~~~E~~~~~~~~~~~~~~~tii~~~~~-~~~~rs~~~~sF~FD~VF~~~-------asQeeVYe~~v 90 (1027)
..+|+|+|||||++.+|+.....+++++...++++...+. .....+..|++|.||++|++. +.|+.||+.++
T Consensus 3 ~~kVkVaVRVRP~nrREl~l~tk~vv~vd~~q~vl~~~pp~~~~~~~k~pktFAFDhcF~s~dpes~n~agQE~Vf~~lG 82 (1714)
T KOG0241|consen 3 DAKVKVAVRVRPMNRRELELSTKCVVEVDKNQTVLHPPPPNHKIGESKGPKTFAFDHCFWSMDPESKNYAGQETVFKCLG 82 (1714)
T ss_pred CcceEEEEEecccchhhhcccccceEEeccCceeecCCCccccccccCCCceeecccccccCCccccccccchhHHHhcc
Confidence 4579999999999999999988898888888777655432 222344678999999999874 68999999999
Q ss_pred HHHHHHHhcCCCeeEEEecccCCCCccccc------CChhhHHHHHHHHHHhcc--ccceeEeeeeeEeeccccccccCC
Q 001693 91 KEVALAVVSGINSSVFAYGQTSSGKTYTMI------GITEYTMSDIYDYIEKHK--EREFVLKFSAMEIYNESVRDLLSA 162 (1027)
Q Consensus 91 ~plV~svL~G~NatIfAYGQTGSGKTyTM~------GIi~rav~dLF~~Ie~~~--e~~f~V~vS~lEIYnE~V~DLL~~ 162 (1027)
..+|+++|+|||+||||||||||||||||+ ||||+.+..||..|.+.+ ...|.|.|||+|||||++||||+|
T Consensus 83 ~~il~naf~GyNaCifaYGQtGsGKsYsmmGt~~QpGiIPrlc~~lFe~I~k~~n~~~tfkVeVSymEIynEkv~DLLdP 162 (1714)
T KOG0241|consen 83 EGILENAFQGYNACIFAYGQTGSGKSYSMMGTAEQPGIIPRLCESLFERIDKESNPSQTFKVEVSYMEIYNEKVRDLLDP 162 (1714)
T ss_pred hHHHHHHhhccceeeEEecccCCCceeEeeccCCCCCchhHHHHHHHHHHHhccCCCceEEEEEEHHHHhhcchhhhhCC
Confidence 999999999999999999999999999998 699999999999998644 578999999999999999999998
Q ss_pred CC--CCceeecCCCCCeEecCCeeEEecCHHHHHHHHHHhhhhhccccccCCCcCCCceeEEEEEEEeecccccCCCCcc
Q 001693 163 DT--SPLRLLDDPERGTIVEKLTEETLKDWNHLKELLSTCEAQRQIGETSLNETSSRSHQILRLTVESSACEFIGNDPSS 240 (1027)
Q Consensus 163 ~~--~~L~i~ed~~~g~~V~gLtev~V~S~ee~~~LL~~g~~~R~~~sT~~N~~SSRSH~IftI~Ve~~~~e~~g~~~s~ 240 (1027)
.. ..++++++.-.|++|.||++..|.+++++..++..|++.|++++|+||..|||||+||.|.|.+...+...+....
T Consensus 163 k~ssqtlkVrehsvlGp~vdGLS~laV~S~qdId~lm~egnKsrtvaatnmn~EssrsHaVFslvvtQ~l~D~ktg~Sge 242 (1714)
T KOG0241|consen 163 KGSSQTLKVREHSVLGPYVDGLSQLAVTSFQDIDSLMSEGNKSRTVAATNMNEESSRSHAVFSLVVTQTLYDLKTGHSGE 242 (1714)
T ss_pred CCCcceeEEeecccccccccchhhhhcccHHHHHHHHHhccccceeeeecccccccccceeEEEEEeeEEeccccCcchh
Confidence 76 4799999999999999999999999999999999999999999999999999999999999999877655444447
Q ss_pred eeeeEEEEecCCCccccccccchhhhhhhhhhhhhHHHHHHHHHHhcC-----CCCCccccCCchhhhhhhhccCCCccc
Q 001693 241 LTATVNFVDLAGSERASQALSAGTRLKEGCHINRSLLTLGTVIRKLSK-----GRNGHVPFRDSKLTRILQSSLGGNART 315 (1027)
Q Consensus 241 ~~SkL~fVDLAGSER~skt~s~g~rlkEg~~INkSL~aLg~VI~aLs~-----~k~~hIPYRDSKLTrLLqdSLGGNskT 315 (1027)
..++|.+||||||||++++++.|.+++||++||+||++||.||.+|++ |+..+||||||.||+||||+|||||+|
T Consensus 243 KvsklslVDLAgserasktga~g~rlkegsNinkSLttLglVIsaLadq~n~kgkdKfvPYrDSVLTwLLkD~LGGNsrT 322 (1714)
T KOG0241|consen 243 KVSKLSLVDLAGSERASKTGAAGSRLKEGSNINKSLTTLGLVISALADQKNGKGKDKFVPYRDSVLTWLLKDNLGGNSRT 322 (1714)
T ss_pred heeeeeEEEeccccccccccchhhhhhhcCCcchhhHHHHHHHHHHHHhhcCCCccccccchhHHHHHHHHhhcCCCcee
Confidence 889999999999999999999999999999999999999999999974 345699999999999999999999999
Q ss_pred eeeeecCCCCcchHHHHHHHHHHHHhhcccccceeccccCHHHHHHHHHHHHHHHHHHHhcCCC
Q 001693 316 AIICTLSPARSHVEQSRNTLLFASCAKEVTTNAQVNIVMSDKALVKHLQRELSRLENELRGSGP 379 (1027)
Q Consensus 316 ~mIatISPs~~~~eETlsTLrFAsRAK~Ikn~~~vN~~~s~kalik~Lq~Ei~~Le~eL~~~~~ 379 (1027)
+||+||||+..+|+||++|||||.|||.|+|++.+|..+... .+++|++|+..|+..|.....
T Consensus 323 vMiatvSPaAdnyeeTlStLRYadrAkrIvN~avvNedpnar-virElReEve~lr~qL~~ae~ 385 (1714)
T KOG0241|consen 323 VMIATVSPAADNYEETLSTLRYADRAKRIVNHAVVNEDPNAR-VIRELREEVEKLREQLEQAEA 385 (1714)
T ss_pred EEEEEecccccchHHHHHHHHHHHHHHHhhccccccCCchHH-HHHHHHHHHHHHHHHHhhhhh
Confidence 999999999999999999999999999999999999887654 799999999999999987543
No 10
>cd01373 KISc_KLP2_like Kinesin motor domain, KLP2-like subgroup. Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second
Probab=100.00 E-value=5.3e-76 Score=658.06 Aligned_cols=315 Identities=38% Similarity=0.586 Sum_probs=284.8
Q ss_pred CCeEEEEEeCCCChhhhhcCCCcceEeeCCCEEEecCCcccccCCcCCceeecceeeCCCCChhhHHHhhHHHHHHHHhc
Q 001693 20 ERIFVSVRLRPLNEKEIARNDVSDWECINDSTIIYRNNLSVAERSMYPTSYTFDRVFSCDCTTRKVYEEGAKEVALAVVS 99 (1027)
Q Consensus 20 e~I~V~VRVRPl~~~E~~~~~~~~~~~~~~~tii~~~~~~~~~rs~~~~sF~FD~VF~~~asQeeVYe~~v~plV~svL~ 99 (1027)
.+|+|+|||||++..|...+...++...++.++++... .++.|.||+||+++++|++||+.+++|+|+++++
T Consensus 1 ~~i~V~vRvRP~~~~e~~~~~~~~v~~~~~~~~~~~~~--------~~~~f~FD~vf~~~~~q~~vy~~~~~p~v~~~~~ 72 (337)
T cd01373 1 PAVKVVVRIRPPNEIEADGGQGQCLKKLSSDTLVWHSH--------PPRMFTFDHVADSNTNQEDVFQSVGKPLVEDCLS 72 (337)
T ss_pred CCeEEEEEcCcCChhhcccCCCeEEEEcCCCcEEeeCC--------CCcEEeCCeEeCCCCCHHHHHHHHHHHHHHHHhC
Confidence 37999999999999998655555555555556655432 1468999999999999999999999999999999
Q ss_pred CCCeeEEEecccCCCCccccc--------------CChhhHHHHHHHHHHhc-----cccceeEeeeeeEeecccccccc
Q 001693 100 GINSSVFAYGQTSSGKTYTMI--------------GITEYTMSDIYDYIEKH-----KEREFVLKFSAMEIYNESVRDLL 160 (1027)
Q Consensus 100 G~NatIfAYGQTGSGKTyTM~--------------GIi~rav~dLF~~Ie~~-----~e~~f~V~vS~lEIYnE~V~DLL 160 (1027)
|||+||||||||||||||||+ ||+|+++++||..+... ....|.|++||+|||||+|||||
T Consensus 73 G~n~ti~aYGqTGSGKTyTm~G~~~~~~~~~~~~~Giipr~~~~Lf~~i~~~~~~~~~~~~~~v~~S~~EIyne~v~DLL 152 (337)
T cd01373 73 GYNGSIFAYGQTGSGKTYTMMGPSSSDDESPHGLQGVIPRIFEYLFSLIQREEEKRGDGLKFLCKCSFLEIYNEQITDLL 152 (337)
T ss_pred CCceeEEEeCCCCCCceEEecCCCCccccccccCCCHHHHHHHHHHHHHHhhhhhcccCceEEEEEEEEeecCCEeeeCC
Confidence 999999999999999999997 57899999999998754 34579999999999999999999
Q ss_pred CCCCCCceeecCCCCCeEecCCeeEEecCHHHHHHHHHHhhhhhccccccCCCcCCCceeEEEEEEEeecccccCCCCcc
Q 001693 161 SADTSPLRLLDDPERGTIVEKLTEETLKDWNHLKELLSTCEAQRQIGETSLNETSSRSHQILRLTVESSACEFIGNDPSS 240 (1027)
Q Consensus 161 ~~~~~~L~i~ed~~~g~~V~gLtev~V~S~ee~~~LL~~g~~~R~~~sT~~N~~SSRSH~IftI~Ve~~~~e~~g~~~s~ 240 (1027)
++....+.+++++.++++|+|++++.|.+++|++++|..|..+|++++|.+|..|||||+||+|+|++..... .....
T Consensus 153 ~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~~~--~~~~~ 230 (337)
T cd01373 153 DPTSRNLKIREDIKKGVYVENLTEEYVSSYEDVYQVLLKGLSNRKVAATSMNSESSRSHAVFTCTIESWEKKA--SSTNI 230 (337)
T ss_pred CCCCCCceEEECCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhccCcccCcCCCCCCCccEEEEEEEEEeecCC--CCCcE
Confidence 9988899999999999999999999999999999999999999999999999999999999999998754321 12235
Q ss_pred eeeeEEEEecCCCccccccccchhhhhhhhhhhhhHHHHHHHHHHhcC---CCCCccccCCchhhhhhhhccCCCcccee
Q 001693 241 LTATVNFVDLAGSERASQALSAGTRLKEGCHINRSLLTLGTVIRKLSK---GRNGHVPFRDSKLTRILQSSLGGNARTAI 317 (1027)
Q Consensus 241 ~~SkL~fVDLAGSER~skt~s~g~rlkEg~~INkSL~aLg~VI~aLs~---~k~~hIPYRDSKLTrLLqdSLGGNskT~m 317 (1027)
..|+|+|||||||||..++++.|.+++|+.+||+||++|++||.+|+. ++..||||||||||+||||+|||||+|+|
T Consensus 231 ~~s~l~~VDLAGSEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~aL~~~~~~~~~~ipyR~SkLT~lL~dsLggns~t~~ 310 (337)
T cd01373 231 RTSRLNLVDLAGSERQKDDGAEGVRLKEAKNINKSLSTLGHVIMALVDVAHGKQRHVPYRDSKLTFLLRDSLGGNAKTTI 310 (337)
T ss_pred EEEEEEEEECCCCCcccccCCccHhhhhhccccHHHHHHHHHHHHHHhhccCCCCccCCcccHHHHHHHHhcCCCceEEE
Confidence 679999999999999999999999999999999999999999999974 34679999999999999999999999999
Q ss_pred eeecCCCCcchHHHHHHHHHHHHhhcc
Q 001693 318 ICTLSPARSHVEQSRNTLLFASCAKEV 344 (1027)
Q Consensus 318 IatISPs~~~~eETlsTLrFAsRAK~I 344 (1027)
||||||+..+++||++||+||+|||.|
T Consensus 311 I~~vsP~~~~~~eTl~TL~fa~rak~I 337 (337)
T cd01373 311 IANVSPSSKCFGETLSTLKFAQRAKLI 337 (337)
T ss_pred EEEECCCcccHHHHHHHHHHHHHhhcC
Confidence 999999999999999999999999986
No 11
>cd01368 KISc_KIF23_like Kinesin motor domain, KIF23-like subgroup. Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, a
Probab=100.00 E-value=1.1e-74 Score=649.35 Aligned_cols=318 Identities=33% Similarity=0.518 Sum_probs=289.9
Q ss_pred CCeEEEEEeCCCChhhhhcCCCcceEeeCCCEEEecCCcccc------cCCcCCceeecceeeCCCCChhhHHHhhHHHH
Q 001693 20 ERIFVSVRLRPLNEKEIARNDVSDWECINDSTIIYRNNLSVA------ERSMYPTSYTFDRVFSCDCTTRKVYEEGAKEV 93 (1027)
Q Consensus 20 e~I~V~VRVRPl~~~E~~~~~~~~~~~~~~~tii~~~~~~~~------~rs~~~~sF~FD~VF~~~asQeeVYe~~v~pl 93 (1027)
.+|+|+|||||++..|...++..++.+.++.++++..+.... .....++.|.||+||+++++|++||+.++.|+
T Consensus 1 ~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~f~Fd~vf~~~~tq~~vy~~~~~p~ 80 (345)
T cd01368 1 DPVKVYLRVRPLSKDELESEDEGCIEVINSTTIQLHPPKGSAARKSERNGGQKETKFSFSKVFGPNTTQKEFFEGTALPL 80 (345)
T ss_pred CCEEEEEEeCcCCchhhccCCCceEEEcCCCEEEEeCCccccccccccccCCCceEeecCeEECCCCCHHHHHHHHHHHH
Confidence 379999999999999998888888999999988887643211 12345779999999999999999999999999
Q ss_pred HHHHhcCCCeeEEEecccCCCCccccc------CChhhHHHHHHHHHHhccccceeEeeeeeEeeccccccccCCCCC--
Q 001693 94 ALAVVSGINSSVFAYGQTSSGKTYTMI------GITEYTMSDIYDYIEKHKEREFVLKFSAMEIYNESVRDLLSADTS-- 165 (1027)
Q Consensus 94 V~svL~G~NatIfAYGQTGSGKTyTM~------GIi~rav~dLF~~Ie~~~e~~f~V~vS~lEIYnE~V~DLL~~~~~-- 165 (1027)
|+++++|||+||||||||||||||||+ ||+|+++++||+.+.. |.|+|||+|||||+|+|||++...
T Consensus 81 v~~~l~G~n~ti~aYGqtGSGKTyTm~G~~~~~Gli~r~~~~lF~~~~~-----~~v~~S~~EIyne~v~DLL~~~~~~~ 155 (345)
T cd01368 81 VQDLLKGKNSLLFTYGVTNSGKTYTMQGSPGDGGILPRSLDVIFNSIGG-----YSVFVSYVEIYNNYIYDLLEDSPSST 155 (345)
T ss_pred HHHHhCCCceEEEEeCCCCCCCeEEecCCCCCCchHHHHHHHHHHHHHh-----eeEEEEEEEEeCCEeEeCCCCccccc
Confidence 999999999999999999999999998 5999999999999876 999999999999999999987553
Q ss_pred ----CceeecCCCCCeEecCCeeEEecCHHHHHHHHHHhhhhhccccccCCCcCCCceeEEEEEEEeecccccCC----C
Q 001693 166 ----PLRLLDDPERGTIVEKLTEETLKDWNHLKELLSTCEAQRQIGETSLNETSSRSHQILRLTVESSACEFIGN----D 237 (1027)
Q Consensus 166 ----~L~i~ed~~~g~~V~gLtev~V~S~ee~~~LL~~g~~~R~~~sT~~N~~SSRSH~IftI~Ve~~~~e~~g~----~ 237 (1027)
++.+++++.++++|+|++++.|.+++|+.++|..|.++|.+++|.+|..|||||+||+|+|.+......+. .
T Consensus 156 ~~~~~l~i~ed~~~~~~i~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~i~~i~v~~~~~~~~~~~~~~~ 235 (345)
T cd01368 156 KKRQSLRLREDHNGNMYVAGLTEVEVSSTEEAREVFKRGQKNRRVAGTKLNRESSRSHSVFTIKLVQAPGDSDGDVDQDK 235 (345)
T ss_pred cCCCceEEEECCCCCEEecCCEEEEeCCHHHHHHHHHHhhccceeccccCcCCCCCceEEEEEEEEEeccCcccccccCC
Confidence 69999999999999999999999999999999999999999999999999999999999998866433221 2
Q ss_pred CcceeeeEEEEecCCCccccccccchhhhhhhhhhhhhHHHHHHHHHHhcCC-----CCCccccCCchhhhhhhhccCCC
Q 001693 238 PSSLTATVNFVDLAGSERASQALSAGTRLKEGCHINRSLLTLGTVIRKLSKG-----RNGHVPFRDSKLTRILQSSLGGN 312 (1027)
Q Consensus 238 ~s~~~SkL~fVDLAGSER~skt~s~g~rlkEg~~INkSL~aLg~VI~aLs~~-----k~~hIPYRDSKLTrLLqdSLGGN 312 (1027)
.....++|+|||||||||..++++.|.+++|+.+||+||++|++||.+|+.. +..||||||||||+||||+||||
T Consensus 236 ~~~~~s~l~~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~aL~~vi~aL~~~~~~~~~~~~iPyR~SkLT~lL~~~l~g~ 315 (345)
T cd01368 236 DQITVSQLSLVDLAGSERTSRTQNTGERLKEAGNINTSLMTLGKCIEVLRENQLSGSTNKMVPYRDSKLTHLFQNYFDGE 315 (345)
T ss_pred CceEEEEEEEEecccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhhhcccCCCCcCCCcCCHHHHHHHHhcCCC
Confidence 3367899999999999999999999999999999999999999999999863 46799999999999999999999
Q ss_pred ccceeeeecCCCCcchHHHHHHHHHHHHhh
Q 001693 313 ARTAIICTLSPARSHVEQSRNTLLFASCAK 342 (1027)
Q Consensus 313 skT~mIatISPs~~~~eETlsTLrFAsRAK 342 (1027)
|+|+|||||||+..+++||++||+||.+|+
T Consensus 316 s~t~~I~~vsp~~~~~~eTl~tL~fa~~a~ 345 (345)
T cd01368 316 GKARMIVNVNPCASDYDETLHVMKFSAIAQ 345 (345)
T ss_pred CeEEEEEEeCCchhhHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999985
No 12
>cd01365 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like proteins. KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively.
Probab=100.00 E-value=5.6e-74 Score=645.78 Aligned_cols=331 Identities=36% Similarity=0.568 Sum_probs=298.7
Q ss_pred CCeEEEEEeCCCChhhhhcCCCcceEeeCCCEEEecCCcccccCCcCCceeecceeeCCC-------CChhhHHHhhHHH
Q 001693 20 ERIFVSVRLRPLNEKEIARNDVSDWECINDSTIIYRNNLSVAERSMYPTSYTFDRVFSCD-------CTTRKVYEEGAKE 92 (1027)
Q Consensus 20 e~I~V~VRVRPl~~~E~~~~~~~~~~~~~~~tii~~~~~~~~~rs~~~~sF~FD~VF~~~-------asQeeVYe~~v~p 92 (1027)
++|+|+||+||++..|...++..++.+.+ ..+.+.++..........+.|.||+||++. ++|++||+.++.|
T Consensus 1 ~~i~V~vRvRP~~~~E~~~~~~~~~~~~~-~~v~v~~~~~~~~~~~~~~~f~FD~vf~~~~~~~~~~~tq~~vf~~~~~p 79 (356)
T cd01365 1 ANVKVAVRVRPFNSREKNRGSKCIVQMPG-KVTTLKNPKAADATRKKPKSFSFDHSYWSHDSEDPHYASQEDVFEDLGRE 79 (356)
T ss_pred CCEEEEEEeCcCChhhhccCCceEEEECC-CEEEEEcCCcccccccCceEEECCeEecccCCCCCCCCCHHHHHHHHHHH
Confidence 47999999999999999988888888877 444444332111123346789999999998 9999999999999
Q ss_pred HHHHHhcCCCeeEEEecccCCCCccccc------CChhhHHHHHHHHHHhccc--cceeEeeeeeEeeccccccccCCCC
Q 001693 93 VALAVVSGINSSVFAYGQTSSGKTYTMI------GITEYTMSDIYDYIEKHKE--REFVLKFSAMEIYNESVRDLLSADT 164 (1027)
Q Consensus 93 lV~svL~G~NatIfAYGQTGSGKTyTM~------GIi~rav~dLF~~Ie~~~e--~~f~V~vS~lEIYnE~V~DLL~~~~ 164 (1027)
+|+++++|||+||||||||||||||||+ ||+|+++++||+.+....+ ..|.|+|||+|||||+|+|||++..
T Consensus 80 ~v~~~l~G~n~~i~ayGqtGSGKT~Tm~G~~~~~Gli~r~~~~Lf~~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~ 159 (356)
T cd01365 80 LLDHAFEGYNVCLFAYGQTGSGKSYTMMGYKEEKGIIPRLCEELFQRIESKKEQNLSYEVEVSYMEIYNEKVRDLLNPKK 159 (356)
T ss_pred HHHHHhCCCceEEEEecCCCCCCeEEecCCCCCCchHHHHHHHHHHHHhhccccCceEEEEEEEEEEECCeeeeCCCCCc
Confidence 9999999999999999999999999998 6899999999999987654 6899999999999999999999874
Q ss_pred ---CCceeecCCCCCeEecCCeeEEecCHHHHHHHHHHhhhhhccccccCCCcCCCceeEEEEEEEeecccccCCCCcce
Q 001693 165 ---SPLRLLDDPERGTIVEKLTEETLKDWNHLKELLSTCEAQRQIGETSLNETSSRSHQILRLTVESSACEFIGNDPSSL 241 (1027)
Q Consensus 165 ---~~L~i~ed~~~g~~V~gLtev~V~S~ee~~~LL~~g~~~R~~~sT~~N~~SSRSH~IftI~Ve~~~~e~~g~~~s~~ 241 (1027)
..+.+++++..|++|+|++++.|.+++++..+|..|.++|++++|.+|..|||||+||+|+|.+...+.........
T Consensus 160 ~~~~~l~i~~~~~~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~l~v~~~~~~~~~~~~~~~ 239 (356)
T cd01365 160 KNKGNLKVREHPVLGPYVEDLSKVAVTSYEDIQNLLEEGNKSRTTASTNMNDTSSRSHAVFTIVLTQKKLDKETDLTTEK 239 (356)
T ss_pred cCCcCceEEECCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhcccccCCCCCCCcCCceEEEEEEEEEEecccCCCCCceE
Confidence 68999999999999999999999999999999999999999999999999999999999999876543322334467
Q ss_pred eeeEEEEecCCCccccccccchhhhhhhhhhhhhHHHHHHHHHHhcCC-------CCCccccCCchhhhhhhhccCCCcc
Q 001693 242 TATVNFVDLAGSERASQALSAGTRLKEGCHINRSLLTLGTVIRKLSKG-------RNGHVPFRDSKLTRILQSSLGGNAR 314 (1027)
Q Consensus 242 ~SkL~fVDLAGSER~skt~s~g~rlkEg~~INkSL~aLg~VI~aLs~~-------k~~hIPYRDSKLTrLLqdSLGGNsk 314 (1027)
.|+|+|||||||||...++..|.+++|+.+||+||.+|++||.+|+.+ +..||||||||||+||+++||||++
T Consensus 240 ~s~l~~VDLAGsEr~~~~~~~~~~~~E~~~IN~SL~aL~~vi~~l~~~~~~~~~~~~~~ipyR~SkLT~lL~~~lgg~s~ 319 (356)
T cd01365 240 VSKISLVDLAGSERASSTGAEGDRLKEGSNINKSLTTLGKVISALADNSSAKSKKKSSFIPYRDSVLTWLLKENLGGNSK 319 (356)
T ss_pred EEEEEeeecccccccccccccchhhHHHHHHhHHHHHHHHHHHHHHhcccccccCCCCcCCCcCcHHHHHHHHhcCCCce
Confidence 899999999999999999999999999999999999999999999864 3579999999999999999999999
Q ss_pred ceeeeecCCCCcchHHHHHHHHHHHHhhcccccceec
Q 001693 315 TAIICTLSPARSHVEQSRNTLLFASCAKEVTTNAQVN 351 (1027)
Q Consensus 315 T~mIatISPs~~~~eETlsTLrFAsRAK~Ikn~~~vN 351 (1027)
|+||+||+|...+++||++||+||++|++|+|.|++|
T Consensus 320 t~~I~~vsp~~~~~~eTl~tL~fa~~~~~i~~~~~~~ 356 (356)
T cd01365 320 TAMIATISPADINYEETLSTLRYADRAKKIVNVAVVN 356 (356)
T ss_pred EEEEEEeCCCcccHHHHHHHHHHHHHHhhccCccccC
Confidence 9999999999999999999999999999999999886
No 13
>cd01367 KISc_KIF2_like Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and lo
Probab=100.00 E-value=2.7e-72 Score=624.59 Aligned_cols=313 Identities=35% Similarity=0.559 Sum_probs=285.4
Q ss_pred CCeEEEEEeCCCChhhhhcCCCcceEeeCCCEEEecCCcccccC--CcCCceeecceeeCCCCChhhHHHhhHHHHHHHH
Q 001693 20 ERIFVSVRLRPLNEKEIARNDVSDWECINDSTIIYRNNLSVAER--SMYPTSYTFDRVFSCDCTTRKVYEEGAKEVALAV 97 (1027)
Q Consensus 20 e~I~V~VRVRPl~~~E~~~~~~~~~~~~~~~tii~~~~~~~~~r--s~~~~sF~FD~VF~~~asQeeVYe~~v~plV~sv 97 (1027)
.+|+|+|||||+++.|...++...+.+.++.++.+..+...... ....+.|+||+||+++++|++||+.+++|+|+.+
T Consensus 1 ~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~f~FD~vf~~~~~q~~vf~~~~~plv~~~ 80 (322)
T cd01367 1 MKITVAVRKRPLNDKELSKGETDVVSCESNPTVTVHEPKTKVDLTKYIEKHTFRFDYVFDEAVTNEEVYRSTVKPLIPHV 80 (322)
T ss_pred CCeEEEEEcCcCChhhhccCCceEEEECCCCEEEEecCccccccccccCCceEecceEECCCCCHHHHHHHHHHHHHHHH
Confidence 37999999999999999888888888887767766543211111 1225789999999999999999999999999999
Q ss_pred hcCCCeeEEEecccCCCCccccc------CChhhHHHHHHHHHHhccccceeEeeeeeEeeccccccccCCCCCCceeec
Q 001693 98 VSGINSSVFAYGQTSSGKTYTMI------GITEYTMSDIYDYIEKHKEREFVLKFSAMEIYNESVRDLLSADTSPLRLLD 171 (1027)
Q Consensus 98 L~G~NatIfAYGQTGSGKTyTM~------GIi~rav~dLF~~Ie~~~e~~f~V~vS~lEIYnE~V~DLL~~~~~~L~i~e 171 (1027)
++|||+||||||||||||||||+ ||+|+++++||+.++... ..|.|++||+|||||+|+|||++ ..++.+++
T Consensus 81 ~~G~n~~i~ayGqtGSGKTyTm~G~~~~~Glipr~~~~lf~~~~~~~-~~~~v~~S~~EIy~e~v~DLL~~-~~~l~i~~ 158 (322)
T cd01367 81 FEGGVATCFAYGQTGSGKTYTMLGDENQEGLYALAARDIFRLLAQPN-DDLGVTVSFFEIYGGKLFDLLND-RKRLSVLE 158 (322)
T ss_pred hCCCceEEEeccCCCCCCceEecCcCCcCccHHHHHHHHHHHHhccc-cccEEEEEEEeeecCchhhhccC-ccceeEEE
Confidence 99999999999999999999999 899999999999998765 68999999999999999999987 56899999
Q ss_pred CCCCCeEecCCeeEEecCHHHHHHHHHHhhhhhccccccCCCcCCCceeEEEEEEEeecccccCCCCcceeeeEEEEecC
Q 001693 172 DPERGTIVEKLTEETLKDWNHLKELLSTCEAQRQIGETSLNETSSRSHQILRLTVESSACEFIGNDPSSLTATVNFVDLA 251 (1027)
Q Consensus 172 d~~~g~~V~gLtev~V~S~ee~~~LL~~g~~~R~~~sT~~N~~SSRSH~IftI~Ve~~~~e~~g~~~s~~~SkL~fVDLA 251 (1027)
++.++++|.|++++.|.+++|++++|..|.++|+++.|.+|..|||||+||+|+|.+... ....|+|+|||||
T Consensus 159 ~~~~~~~v~~l~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~-------~~~~s~l~~vDLA 231 (322)
T cd01367 159 DGKGNVQIVGLTEKPVTSVDELLELIESGNSLRTTGSTGANDQSSRSHAILQIILKNKKL-------NKLLGKLSFIDLA 231 (322)
T ss_pred cCCCCEEeCCCEEEEeCCHHHHHHHHHHHhcccccccCcCCCCcccceEEEEEEEEEecC-------CeeEEEEEEeecC
Confidence 999999999999999999999999999999999999999999999999999999987653 3568999999999
Q ss_pred CCccccccc-cchhhhhhhhhhhhhHHHHHHHHHHhcCCCCCccccCCchhhhhhhhccCCCccceeeeecCCCCcchHH
Q 001693 252 GSERASQAL-SAGTRLKEGCHINRSLLTLGTVIRKLSKGRNGHVPFRDSKLTRILQSSLGGNARTAIICTLSPARSHVEQ 330 (1027)
Q Consensus 252 GSER~skt~-s~g~rlkEg~~INkSL~aLg~VI~aLs~~k~~hIPYRDSKLTrLLqdSLGGNskT~mIatISPs~~~~eE 330 (1027)
|||+..... ..+.+++|+.+||+||++|++||.+|+.++ .||||||||||+||||+|||||+|+|||||||+..+++|
T Consensus 232 GsE~~~~~~~~~~~~~~e~~~IN~SL~~L~~vi~al~~~~-~~iPyRdSkLT~lL~~~L~g~~~t~~I~~vsp~~~~~~e 310 (322)
T cd01367 232 GSERGADTSEHDRQTRKEGAEINKSLLALKECIRALASNK-AHVPFRGSKLTQVLRDSFIGNSKTVMIATISPSASSCEH 310 (322)
T ss_pred CccccccccccchhhHHhHhHHhHHHHHHHHHHHHHhcCC-CcCCCccCHHHHHHHHhhCCCCeEEEEEEeCCchhhHHH
Confidence 999998765 468899999999999999999999999865 699999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhh
Q 001693 331 SRNTLLFASCAK 342 (1027)
Q Consensus 331 TlsTLrFAsRAK 342 (1027)
|++||+||+|+|
T Consensus 311 Tl~tL~fa~r~k 322 (322)
T cd01367 311 TLNTLRYADRVK 322 (322)
T ss_pred HHHHHHHHHhhC
Confidence 999999999986
No 14
>cd01371 KISc_KIF3 Kinesin motor domain, kinesins II or KIF3_like proteins. Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain
Probab=100.00 E-value=3.8e-72 Score=625.84 Aligned_cols=322 Identities=39% Similarity=0.607 Sum_probs=293.7
Q ss_pred CCeEEEEEeCCCChhhhhcCCCcceEee-CCCEEEecCCcccccCCcCCceeecceeeCCCCChhhHHHhhHHHHHHHHh
Q 001693 20 ERIFVSVRLRPLNEKEIARNDVSDWECI-NDSTIIYRNNLSVAERSMYPTSYTFDRVFSCDCTTRKVYEEGAKEVALAVV 98 (1027)
Q Consensus 20 e~I~V~VRVRPl~~~E~~~~~~~~~~~~-~~~tii~~~~~~~~~rs~~~~sF~FD~VF~~~asQeeVYe~~v~plV~svL 98 (1027)
++|+|+||+||++..|...++...+.+. +..++.+.++. ......++.|.||+||+++++|++||+.++.|+|++++
T Consensus 1 ~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~~~f~fd~vf~~~~~q~~vy~~~~~plv~~~~ 78 (333)
T cd01371 1 ENVKVVVRCRPLNKREKSEGAPEIVGVDENRGQVTVHNPK--ADAKEPPKVFTFDAVYDPNSTQEDVYNETARPLVDSVL 78 (333)
T ss_pred CCeEEEEEcCcCChhhhhcCCCeEEEEcCCCCEEEEeCCc--ccccCCCceeeeccccCCCccHHHHHHHHHHHHHHHHh
Confidence 5799999999999999888777777664 34455554432 22234578999999999999999999999999999999
Q ss_pred cCCCeeEEEecccCCCCccccc---------CChhhHHHHHHHHHHhccccceeEeeeeeEeeccccccccCCCC-CCce
Q 001693 99 SGINSSVFAYGQTSSGKTYTMI---------GITEYTMSDIYDYIEKHKEREFVLKFSAMEIYNESVRDLLSADT-SPLR 168 (1027)
Q Consensus 99 ~G~NatIfAYGQTGSGKTyTM~---------GIi~rav~dLF~~Ie~~~e~~f~V~vS~lEIYnE~V~DLL~~~~-~~L~ 168 (1027)
+|+|+||||||||||||||||+ ||+|+++++||+.+....+..|.|.|||+|||||+|+|||++.. ..+.
T Consensus 79 ~G~n~~i~ayG~tgSGKTyTm~G~~~~~~~~Glipr~~~~Lf~~~~~~~~~~~~v~~S~~Eiy~e~v~DLL~~~~~~~l~ 158 (333)
T cd01371 79 EGYNGTIFAYGQTGTGKTFTMEGVREPPELRGIIPNSFAHIFGHIAKAENVQFLVRVSYLEIYNEEVRDLLGKDQKKKLE 158 (333)
T ss_pred CCCceeEEecCCCCCCCcEeecCCCCcccccchHHHHHHHHHHHHhhccCccEEEEEEEEEeeCCeeeeCCCCCCCCcee
Confidence 9999999999999999999997 58999999999999988888999999999999999999999876 5899
Q ss_pred eecCCCCCeEecCCeeEEecCHHHHHHHHHHhhhhhccccccCCCcCCCceeEEEEEEEeecccccCCCCcceeeeEEEE
Q 001693 169 LLDDPERGTIVEKLTEETLKDWNHLKELLSTCEAQRQIGETSLNETSSRSHQILRLTVESSACEFIGNDPSSLTATVNFV 248 (1027)
Q Consensus 169 i~ed~~~g~~V~gLtev~V~S~ee~~~LL~~g~~~R~~~sT~~N~~SSRSH~IftI~Ve~~~~e~~g~~~s~~~SkL~fV 248 (1027)
+++++.++++|.|++++.|.+++++..+|..|.++|+++.|.+|..|||||+||+|+|++...... +......|+|+||
T Consensus 159 i~~~~~~~~~v~~l~~~~v~s~~~~~~~l~~g~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~-~~~~~~~s~L~~V 237 (333)
T cd01371 159 LKERPDRGVYVKDLSMFVVKNAEEMDKLMTLGNKNRSVGATNMNEDSSRSHSIFTITIECSEKGED-GENHIRVGKLNLV 237 (333)
T ss_pred EEEcCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhhCccccccccCCCCCCcEEEEEEEEEEeccCC-CCCcEEEEEEEEE
Confidence 999999999999999999999999999999999999999999999999999999999988764321 2233668999999
Q ss_pred ecCCCccccccccchhhhhhhhhhhhhHHHHHHHHHHhcCCCCCccccCCchhhhhhhhccCCCccceeeeecCCCCcch
Q 001693 249 DLAGSERASQALSAGTRLKEGCHINRSLLTLGTVIRKLSKGRNGHVPFRDSKLTRILQSSLGGNARTAIICTLSPARSHV 328 (1027)
Q Consensus 249 DLAGSER~skt~s~g~rlkEg~~INkSL~aLg~VI~aLs~~k~~hIPYRDSKLTrLLqdSLGGNskT~mIatISPs~~~~ 328 (1027)
||||||+..+++..|.+++|+..||+||.+|++||.+|+.++..|||||+||||+||+++|||||+|+||+||+|...++
T Consensus 238 DLAGsEr~~~~~~~~~~~~E~~~iN~sL~~L~~vi~al~~~~~~~ipyR~SkLT~lL~~~l~g~s~t~~I~~vsP~~~~~ 317 (333)
T cd01371 238 DLAGSERQSKTGATGDRLKEATKINLSLSALGNVISALVDGKSTHIPYRDSKLTRLLQDSLGGNSKTVMCANIGPADYNY 317 (333)
T ss_pred ECCCCCcccccCCchhhhHhHhhhhhHHHHHHHHHHHHHhCCCCcCCCccCHHHHHHHHhcCCCceEEEEEEeCCccccH
Confidence 99999999999999999999999999999999999999998777999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcc
Q 001693 329 EQSRNTLLFASCAKEV 344 (1027)
Q Consensus 329 eETlsTLrFAsRAK~I 344 (1027)
+||++||+||+|||.|
T Consensus 318 ~eTl~TL~fa~r~r~I 333 (333)
T cd01371 318 DETLSTLRYANRAKNI 333 (333)
T ss_pred HHHHHHHHHHHHhhcC
Confidence 9999999999999986
No 15
>cd01364 KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil d
Probab=100.00 E-value=4.6e-72 Score=629.10 Aligned_cols=327 Identities=37% Similarity=0.566 Sum_probs=297.3
Q ss_pred CCeEEEEEeCCCChhhhhcCCCcceEeeCC-CEEEecCCcccccCCcCCceeecceeeCCCCChhhHHHhhHHHHHHHHh
Q 001693 20 ERIFVSVRLRPLNEKEIARNDVSDWECIND-STIIYRNNLSVAERSMYPTSYTFDRVFSCDCTTRKVYEEGAKEVALAVV 98 (1027)
Q Consensus 20 e~I~V~VRVRPl~~~E~~~~~~~~~~~~~~-~tii~~~~~~~~~rs~~~~sF~FD~VF~~~asQeeVYe~~v~plV~svL 98 (1027)
.+|+|+||+||+...|...+...++.+.++ .+|.+.+.. ......+.|.||+||+++++|++||+.++.|+|++++
T Consensus 2 ~~i~V~vRvRP~~~~e~~~~~~~~i~~~~~~~~i~~~~~~---~~~~~~~~f~Fd~vf~~~~~q~~vy~~~~~plv~~~~ 78 (352)
T cd01364 2 SNIQVVVRCRPRNSRERKEKSSVVVEVSGSSKEIIVSTGG---ADKQSTKTYTFDKVFGPEADQIEVYSQVVSPILDEVL 78 (352)
T ss_pred CCEEEEEEcCcCCccccccCCCeEEEEcCCCcEEEEcCCC---cccccceeEeccccCCCCCCHHHHHHHHHHHHHHHHh
Confidence 589999999999999987777788888765 666665542 1223467899999999999999999999999999999
Q ss_pred cCCCeeEEEecccCCCCccccc-----------------CChhhHHHHHHHHHHhccccceeEeeeeeEeeccccccccC
Q 001693 99 SGINSSVFAYGQTSSGKTYTMI-----------------GITEYTMSDIYDYIEKHKEREFVLKFSAMEIYNESVRDLLS 161 (1027)
Q Consensus 99 ~G~NatIfAYGQTGSGKTyTM~-----------------GIi~rav~dLF~~Ie~~~e~~f~V~vS~lEIYnE~V~DLL~ 161 (1027)
+|||+||||||||||||||||+ ||+|+++.+||+.+... ...|.|+|||+|||||+|+|||+
T Consensus 79 ~G~n~~i~ayG~tgSGKTyTl~G~~~~~~~~~~~~~~~~Glipr~~~~Lf~~~~~~-~~~~~v~~S~~EIy~e~v~DLL~ 157 (352)
T cd01364 79 MGYNCTIFAYGQTGTGKTYTMEGDRTDNKGSTWELSPHAGIIPRALYQLFEKLESQ-NTEYSVKVSYLELYNEELFDLLS 157 (352)
T ss_pred CCCeEEEEECCCCCCCCcEEecCCCcccccccccccccCCchHHHHHHHHHHHHhc-cceeEEEEEEEEeeCCeeeeCCC
Confidence 9999999999999999999996 58999999999999876 67899999999999999999999
Q ss_pred CC---CCCceeecC--CCCCeEecCCeeEEecCHHHHHHHHHHhhhhhccccccCCCcCCCceeEEEEEEEeecccccCC
Q 001693 162 AD---TSPLRLLDD--PERGTIVEKLTEETLKDWNHLKELLSTCEAQRQIGETSLNETSSRSHQILRLTVESSACEFIGN 236 (1027)
Q Consensus 162 ~~---~~~L~i~ed--~~~g~~V~gLtev~V~S~ee~~~LL~~g~~~R~~~sT~~N~~SSRSH~IftI~Ve~~~~e~~g~ 236 (1027)
+. ..+++++++ ..+|++|+|++++.|.+++++..+|..|.++|++++|.+|..|||||+||+|+|.+...... .
T Consensus 158 ~~~~~~~~l~i~e~~~~~~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~sSRSH~i~~i~i~~~~~~~~-~ 236 (352)
T cd01364 158 SESDLNKPLRIFDDTNNKGGVVIQGLEEITVNNANEGLKLLEKGSAKRKTAATLMNDQSSRSHSIFSITIHIKETTIS-G 236 (352)
T ss_pred CccccCccceEEeccCcCCCEEeCCcEEEEeCCHHHHHHHHHHHhhhcccccCcCCCCCCCCceEEEEEEEEeccCCC-C
Confidence 87 568999999 58999999999999999999999999999999999999999999999999999987654322 2
Q ss_pred CCcceeeeEEEEecCCCccccccccchhhhhhhhhhhhhHHHHHHHHHHhcCCCCCccccCCchhhhhhhhccCCCccce
Q 001693 237 DPSSLTATVNFVDLAGSERASQALSAGTRLKEGCHINRSLLTLGTVIRKLSKGRNGHVPFRDSKLTRILQSSLGGNARTA 316 (1027)
Q Consensus 237 ~~s~~~SkL~fVDLAGSER~skt~s~g~rlkEg~~INkSL~aLg~VI~aLs~~k~~hIPYRDSKLTrLLqdSLGGNskT~ 316 (1027)
......|+|+||||||+|+..+.++.+.+++|+..||+||.+|++||.+|+.+. .|||||+||||+||+++|||||+|+
T Consensus 237 ~~~~~~s~l~~VDLAGsE~~~~~~~~~~~~~e~~~iN~SL~~L~~vi~al~~~~-~~vpyR~S~LT~lL~~~Lgg~s~t~ 315 (352)
T cd01364 237 EELVKIGKLNLVDLAGSENIGRSGAENKRAREAGNINQSLLTLGRVINALVEKS-PHIPYRESKLTRLLQDSLGGRTKTS 315 (352)
T ss_pred CccEEEEEEEEEECCCccccccccCcchhhHHHhhhhHHHHHHHHHHHHHHcCC-CCCCCcccHHHHHHHHhcCCCceEE
Confidence 222567999999999999999999999999999999999999999999998754 6999999999999999999999999
Q ss_pred eeeecCCCCcchHHHHHHHHHHHHhhcccccceecc
Q 001693 317 IICTLSPARSHVEQSRNTLLFASCAKEVTTNAQVNI 352 (1027)
Q Consensus 317 mIatISPs~~~~eETlsTLrFAsRAK~Ikn~~~vN~ 352 (1027)
|||||||+..+++||++||+||++|++|+|+|.+|.
T Consensus 316 ~I~~vsp~~~~~~eTl~TL~~a~~~~~i~n~P~~n~ 351 (352)
T cd01364 316 IIATISPASINLEETLSTLEYAHRAKNIKNKPEVNQ 351 (352)
T ss_pred EEEEeCCCcccHHHHHHHHHHHHHHhhccCccccCC
Confidence 999999999999999999999999999999999984
No 16
>cd01374 KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to
Probab=100.00 E-value=1.2e-71 Score=618.56 Aligned_cols=314 Identities=54% Similarity=0.795 Sum_probs=291.8
Q ss_pred CeEEEEEeCCCChhhhhcCCCcceEeeCCCEEEecCCcccccCCcCCceeecceeeCCCCChhhHHHhhHHHHHHHHhcC
Q 001693 21 RIFVSVRLRPLNEKEIARNDVSDWECINDSTIIYRNNLSVAERSMYPTSYTFDRVFSCDCTTRKVYEEGAKEVALAVVSG 100 (1027)
Q Consensus 21 ~I~V~VRVRPl~~~E~~~~~~~~~~~~~~~tii~~~~~~~~~rs~~~~sF~FD~VF~~~asQeeVYe~~v~plV~svL~G 100 (1027)
+|+|+||+||++..|+ .++.+.|.+.++.+++...+ ...+.|.||+||+++++|++||+.++.|+|+++++|
T Consensus 1 ~V~V~vRvRP~~~~e~-~~~~~~~~~~~~~~v~~~~~-------~~~~~f~fd~vf~~~~~q~~vy~~~~~p~v~~~l~G 72 (321)
T cd01374 1 KIKVSVRVRPLNPRES-DNEQVAWSIDNDNTISLEES-------TPGQSFTFDRVFGGESTNREVYERIAKPVVRSALEG 72 (321)
T ss_pred CeEEEEEcCcCCcccc-cCCcceEEECCCCEEEEcCC-------CCCeEEecCeEECCCCCHHHHHHHHHHHHHHHHHCC
Confidence 5999999999999988 35678888888877776543 235799999999999999999999999999999999
Q ss_pred CCeeEEEecccCCCCccccc------CChhhHHHHHHHHHHhccccceeEeeeeeEeeccccccccCCCCCCceeecCCC
Q 001693 101 INSSVFAYGQTSSGKTYTMI------GITEYTMSDIYDYIEKHKEREFVLKFSAMEIYNESVRDLLSADTSPLRLLDDPE 174 (1027)
Q Consensus 101 ~NatIfAYGQTGSGKTyTM~------GIi~rav~dLF~~Ie~~~e~~f~V~vS~lEIYnE~V~DLL~~~~~~L~i~ed~~ 174 (1027)
+|+||||||||||||||||+ ||+|+++++||..+....+..|.|++||+|||||+|+|||++...++++++++.
T Consensus 73 ~n~~i~ayG~tgSGKT~T~~G~~~~~Gli~r~~~~lf~~~~~~~~~~~~v~~S~~Eiy~e~v~DLL~~~~~~l~i~~~~~ 152 (321)
T cd01374 73 YNGTIFAYGQTSSGKTFTMSGDEQEPGIIPLAVRDIFQRIQDTPDREFLLRVSYLEIYNEKIKDLLSPSPQELRIREDPN 152 (321)
T ss_pred CceeEEeecCCCCCCceeccCCCCCCchHHHHHHHHHHHHhcccCceEEEEEEEEEEEcCEeEEccCCCCCCceEEECCC
Confidence 99999999999999999998 899999999999999888889999999999999999999999989999999999
Q ss_pred CCeEecCCeeEEecCHHHHHHHHHHhhhhhccccccCCCcCCCceeEEEEEEEeecccccCCCCcceeeeEEEEecCCCc
Q 001693 175 RGTIVEKLTEETLKDWNHLKELLSTCEAQRQIGETSLNETSSRSHQILRLTVESSACEFIGNDPSSLTATVNFVDLAGSE 254 (1027)
Q Consensus 175 ~g~~V~gLtev~V~S~ee~~~LL~~g~~~R~~~sT~~N~~SSRSH~IftI~Ve~~~~e~~g~~~s~~~SkL~fVDLAGSE 254 (1027)
+|++|.|++++.|.+++++..+|..|.++|+++.|.+|..|||||+||+|+|.+...... .......|+|+||||||+|
T Consensus 153 ~~~~v~gl~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~-~~~~~~~s~l~~vDLAGsE 231 (321)
T cd01374 153 KGVVVAGLTEEIVTSPEHLLQLIARGEKNRHVGETDFNERSSRSHTIFQLTIESRERGDS-ESGTVRVSTLNLIDLAGSE 231 (321)
T ss_pred CCEEeCCceEEEeCCHHHHHHHHHHHHhccccccCcCCCccccccEEEEEEEEEEecCCC-CCCcEEEEEEEEEECCCCC
Confidence 999999999999999999999999999999999999999999999999999998764321 1233678999999999999
Q ss_pred cccccccchhhhhhhhhhhhhHHHHHHHHHHhcCCC-CCccccCCchhhhhhhhccCCCccceeeeecCCCCcchHHHHH
Q 001693 255 RASQALSAGTRLKEGCHINRSLLTLGTVIRKLSKGR-NGHVPFRDSKLTRILQSSLGGNARTAIICTLSPARSHVEQSRN 333 (1027)
Q Consensus 255 R~skt~s~g~rlkEg~~INkSL~aLg~VI~aLs~~k-~~hIPYRDSKLTrLLqdSLGGNskT~mIatISPs~~~~eETls 333 (1027)
+..+.+ .+.+++|+.+||+||.+|++||.+|+.+. ..||||||||||+||+++||||++|+|||||||...+++||++
T Consensus 232 ~~~~~~-~~~~~~e~~~iN~Sl~~L~~vi~al~~~~~~~~vpyR~SkLT~lL~~~L~g~s~t~~i~~vsp~~~~~~eTl~ 310 (321)
T cd01374 232 RASQTG-AGERRKEGSFINKSLLTLGTVISKLSEGKNSGHIPYRDSKLTRILQPSLSGNARTAIICTISPASSHVEETLN 310 (321)
T ss_pred ccccCC-CCccccccchhhhHHHHHHHHHHHHHhcCCCCcCCCcCCHHHHHHHHhcCCCceEEEEEEeCCccccHHHHHH
Confidence 999888 89999999999999999999999999875 6799999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcc
Q 001693 334 TLLFASCAKEV 344 (1027)
Q Consensus 334 TLrFAsRAK~I 344 (1027)
||+||+||++|
T Consensus 311 TL~~a~r~~~i 321 (321)
T cd01374 311 TLKFASRAKKV 321 (321)
T ss_pred HHHHHHHHhcC
Confidence 99999999986
No 17
>cd01369 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup. Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-c
Probab=100.00 E-value=4.6e-71 Score=614.63 Aligned_cols=314 Identities=40% Similarity=0.584 Sum_probs=292.7
Q ss_pred CCeEEEEEeCCCChhhhhcCCCcceEeeCCCEEEecCCcccccCCcCCceeecceeeCCCCChhhHHHhhHHHHHHHHhc
Q 001693 20 ERIFVSVRLRPLNEKEIARNDVSDWECINDSTIIYRNNLSVAERSMYPTSYTFDRVFSCDCTTRKVYEEGAKEVALAVVS 99 (1027)
Q Consensus 20 e~I~V~VRVRPl~~~E~~~~~~~~~~~~~~~tii~~~~~~~~~rs~~~~sF~FD~VF~~~asQeeVYe~~v~plV~svL~ 99 (1027)
++|+|+|||||+++.|...++.+++.+.++.++.+... ...+.|.||+||+++++|++||+.+++|+|+.+++
T Consensus 2 ~~i~V~vRvRP~~~~e~~~~~~~~v~~~~~~~v~~~~~-------~~~~~f~FD~vf~~~~~q~~vy~~~~~~~v~~~~~ 74 (325)
T cd01369 2 CNIKVVCRFRPLNEKEELRGSKSIVKFPGEDTVSIAGS-------DDGKTFSFDRVFPPNTTQEDVYNFVAKPIVDDVLN 74 (325)
T ss_pred CCeEEEEEcCcCChhhhccCCceEEEEcCCCEEEecCC-------CCceEEEcCeEECCCCCHHHHHHHHHHHHHHHHHc
Confidence 58999999999999998888888888888878877643 23568999999999999999999999999999999
Q ss_pred CCCeeEEEecccCCCCccccc---------CChhhHHHHHHHHHHhcc-ccceeEeeeeeEeeccccccccCCCCCCcee
Q 001693 100 GINSSVFAYGQTSSGKTYTMI---------GITEYTMSDIYDYIEKHK-EREFVLKFSAMEIYNESVRDLLSADTSPLRL 169 (1027)
Q Consensus 100 G~NatIfAYGQTGSGKTyTM~---------GIi~rav~dLF~~Ie~~~-e~~f~V~vS~lEIYnE~V~DLL~~~~~~L~i 169 (1027)
|+|+||||||||||||||||+ ||+|+++++||+.+.... ...|.|++||+|||||+|+|||++....+.+
T Consensus 75 G~n~~i~ayG~tgSGKT~Tm~G~~~~~~~~Giipr~~~~Lf~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~~~l~i 154 (325)
T cd01369 75 GYNGTIFAYGQTGSGKTYTMEGPPGDPELKGIIPRIVHDIFEHISSMDENLEFHVKVSYLEIYMEKIRDLLDVSKDNLQV 154 (325)
T ss_pred CccceEEEeCCCCCCceEEecCCCCccccCChHHHHHHHHHHHHhhccCCceEEEEEEEEEEECCChhhcccCccCCceE
Confidence 999999999999999999996 699999999999997654 4579999999999999999999998889999
Q ss_pred ecCCCCCeEecCCeeEEecCHHHHHHHHHHhhhhhccccccCCCcCCCceeEEEEEEEeecccccCCCCcceeeeEEEEe
Q 001693 170 LDDPERGTIVEKLTEETLKDWNHLKELLSTCEAQRQIGETSLNETSSRSHQILRLTVESSACEFIGNDPSSLTATVNFVD 249 (1027)
Q Consensus 170 ~ed~~~g~~V~gLtev~V~S~ee~~~LL~~g~~~R~~~sT~~N~~SSRSH~IftI~Ve~~~~e~~g~~~s~~~SkL~fVD 249 (1027)
++++.+|++|+|++++.|.+++++..+|..|.++|++++|.+|..|||||+||+|+|.+.... ......|+|+|||
T Consensus 155 ~~~~~~~~~v~gl~~~~v~s~~e~~~~i~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~----~~~~~~s~l~~VD 230 (325)
T cd01369 155 HEDKNRGVYVKGLTERFVSSPEEVLEVINEGKSNRAVASTNMNEESSRSHSIFLITLKQENVE----TGSKKRGKLFLVD 230 (325)
T ss_pred EEcCCCCEEEcCCEEEEcCCHHHHHHHHHHHHhhcccccCcCCCccccccEEEEEEEEEEecC----CCCEEEEEEEEEE
Confidence 999999999999999999999999999999999999999999999999999999999876532 2335789999999
Q ss_pred cCCCccccccccchhhhhhhhhhhhhHHHHHHHHHHhcCCCCCccccCCchhhhhhhhccCCCccceeeeecCCCCcchH
Q 001693 250 LAGSERASQALSAGTRLKEGCHINRSLLTLGTVIRKLSKGRNGHVPFRDSKLTRILQSSLGGNARTAIICTLSPARSHVE 329 (1027)
Q Consensus 250 LAGSER~skt~s~g~rlkEg~~INkSL~aLg~VI~aLs~~k~~hIPYRDSKLTrLLqdSLGGNskT~mIatISPs~~~~e 329 (1027)
|||+|+..+.+..|.+++|+..||+||.+|++||.+|+.++..||||||||||+||+++|||||+|+||+||||+..+++
T Consensus 231 LAGsE~~~~~~~~~~~~~e~~~in~sl~~L~~vi~aL~~~~~~~vpyR~S~LT~lL~~~L~g~s~t~~I~~vsp~~~~~~ 310 (325)
T cd01369 231 LAGSEKVSKTGAEGQTLEEAKKINKSLSALGNVINALTDGKSTHIPYRDSKLTRILQDSLGGNSRTTLIICCSPSSYNES 310 (325)
T ss_pred CCCCCcccccCCcchhHHHHHHHhHHHHHHHHHHHHHHcCCCCcCCCccCHHHHHHHHhcCCCCeEEEEEEeCCccccHH
Confidence 99999999999999999999999999999999999999887689999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcc
Q 001693 330 QSRNTLLFASCAKEV 344 (1027)
Q Consensus 330 ETlsTLrFAsRAK~I 344 (1027)
||++||+||+|||+|
T Consensus 311 eTl~TL~~a~r~~~i 325 (325)
T cd01369 311 ETLSTLRFGARAKTI 325 (325)
T ss_pred HHHHHHHHHHHhhcC
Confidence 999999999999986
No 18
>cd01376 KISc_KID_like Kinesin motor domain, KIF22/Kid-like subgroup. Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through
Probab=100.00 E-value=1.5e-70 Score=609.60 Aligned_cols=308 Identities=35% Similarity=0.548 Sum_probs=280.0
Q ss_pred CeEEEEEeCCCChhhhhcCCCcceEeeCC-----CEEEecCCcccccCCcCCceeecceeeCCCCChhhHHHhhHHHHHH
Q 001693 21 RIFVSVRLRPLNEKEIARNDVSDWECIND-----STIIYRNNLSVAERSMYPTSYTFDRVFSCDCTTRKVYEEGAKEVAL 95 (1027)
Q Consensus 21 ~I~V~VRVRPl~~~E~~~~~~~~~~~~~~-----~tii~~~~~~~~~rs~~~~sF~FD~VF~~~asQeeVYe~~v~plV~ 95 (1027)
+|+|+|||||+.+.|. +...++...+. ..+.+.++. ....++.|.||+||+++++|++||+.++.|+|+
T Consensus 1 ~i~V~vRvRP~~~~e~--~~~~~v~~~~~~~~~~~~v~~~~~~----~~~~~~~f~FD~vf~~~~~q~~vy~~~~~plv~ 74 (319)
T cd01376 1 NVRVVVRVRPFLDCEE--DSSSCVRGIDSDQGQAKSVEIENPR----NRGETKKYQFDAFYGTECTQEDIFSREVKPIVP 74 (319)
T ss_pred CcEEEEEeCcCCcccc--CCCceEEEeCCCCCcceEEEEeCCC----CCCCccEEecCeEECCCCCHHHHHHHHHHHHHH
Confidence 5899999999998884 34455555444 345544432 122367899999999999999999999999999
Q ss_pred HHhcCCCeeEEEecccCCCCccccc------CChhhHHHHHHHHHHhccccceeEeeeeeEeeccccccccCCCCCCcee
Q 001693 96 AVVSGINSSVFAYGQTSSGKTYTMI------GITEYTMSDIYDYIEKHKEREFVLKFSAMEIYNESVRDLLSADTSPLRL 169 (1027)
Q Consensus 96 svL~G~NatIfAYGQTGSGKTyTM~------GIi~rav~dLF~~Ie~~~e~~f~V~vS~lEIYnE~V~DLL~~~~~~L~i 169 (1027)
.+++|||+||||||||||||||||+ ||+|+++++||+.+++.. ..|.|++||+|||||.|+|||++....+.+
T Consensus 75 ~~~~G~n~~i~ayG~tgSGKTyTm~G~~~~~Glipr~~~~Lf~~~~~~~-~~~~v~~S~~EIy~e~v~DLL~~~~~~l~i 153 (319)
T cd01376 75 HLLSGQNATVFAYGSTGAGKTHTMLGDPNEPGLIPRTLSDLLRMGRKQA-WTGAFSMSYYEIYNEKVYDLLEPAKKELPI 153 (319)
T ss_pred HHhCCCceEEEEECCCCCCCcEEEeCCcCccchHHHHHHHHHHHHhhcc-ccceEEEEEEEEECCEeeEccCCCCCCceE
Confidence 9999999999999999999999997 799999999999887654 679999999999999999999998889999
Q ss_pred ecCCCCCeEecCCeeEEecCHHHHHHHHHHhhhhhccccccCCCcCCCceeEEEEEEEeecccccCCCCcceeeeEEEEe
Q 001693 170 LDDPERGTIVEKLTEETLKDWNHLKELLSTCEAQRQIGETSLNETSSRSHQILRLTVESSACEFIGNDPSSLTATVNFVD 249 (1027)
Q Consensus 170 ~ed~~~g~~V~gLtev~V~S~ee~~~LL~~g~~~R~~~sT~~N~~SSRSH~IftI~Ve~~~~e~~g~~~s~~~SkL~fVD 249 (1027)
++++.++++|.|++++.|.+++++..++..|.++|.+++|.+|..|||||+||+|+|.+.... ....|+|+|||
T Consensus 154 ~~~~~~~~~v~gl~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~~------~~~~s~l~~VD 227 (319)
T cd01376 154 REDKDGNILIVGLTSKPIKSMAEFEEAYIPASKNRTVAATKLNDNSSRSHAVLRIKVTQPASN------IQLEGKLNLID 227 (319)
T ss_pred EEcCCCCEEeeCCEEEEeCCHHHHHHHHHHHHhhhccccCcCCCccCCCeEEEEEEEEEECCC------ceEEEEEEEEE
Confidence 999999999999999999999999999999999999999999999999999999999876432 25789999999
Q ss_pred cCCCccccccccchhhhhhhhhhhhhHHHHHHHHHHhcCCCCCccccCCchhhhhhhhccCCCccceeeeecCCCCcchH
Q 001693 250 LAGSERASQALSAGTRLKEGCHINRSLLTLGTVIRKLSKGRNGHVPFRDSKLTRILQSSLGGNARTAIICTLSPARSHVE 329 (1027)
Q Consensus 250 LAGSER~skt~s~g~rlkEg~~INkSL~aLg~VI~aLs~~k~~hIPYRDSKLTrLLqdSLGGNskT~mIatISPs~~~~e 329 (1027)
|||||+..+++..|.+++|+.+||+||.+|++||.+|+.+. .||||||||||+||+|+|||||+|+|||||||...+++
T Consensus 228 LAGsE~~~~~~~~g~~~~e~~~iN~Sl~~L~~vi~aL~~~~-~~ipyr~S~LT~lL~~~L~g~s~t~~i~~vsp~~~~~~ 306 (319)
T cd01376 228 LAGSEDNRRTGNEGIRLKESAAINSSLFVLSKVVDALNKGL-PRIPYRESKLTRLLQDSLGGGSRCIMVANIAPERSFYQ 306 (319)
T ss_pred CCCCCcccccCCccchhhhhhhhhhhHHHHHHHHHHHhcCC-CcCCCccCHHHHHHHHhcCCCccEEEEEEeCCchhhHH
Confidence 99999999999999999999999999999999999999764 69999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhh
Q 001693 330 QSRNTLLFASCAK 342 (1027)
Q Consensus 330 ETlsTLrFAsRAK 342 (1027)
||++||+||+|||
T Consensus 307 eTl~TL~fa~r~~ 319 (319)
T cd01376 307 DTLSTLNFASRSK 319 (319)
T ss_pred HHHHHHHHHHhhC
Confidence 9999999999986
No 19
>cd01372 KISc_KIF4 Kinesin motor domain, KIF4-like subfamily. Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain,
Probab=100.00 E-value=1.7e-70 Score=613.56 Aligned_cols=315 Identities=40% Similarity=0.590 Sum_probs=287.1
Q ss_pred CeEEEEEeCCCChhhhhcCCCcceEeeCC-CEEEecCCcccccCCcCCceeecceeeCCCCChhhHHHhhHHHHHHHHhc
Q 001693 21 RIFVSVRLRPLNEKEIARNDVSDWECIND-STIIYRNNLSVAERSMYPTSYTFDRVFSCDCTTRKVYEEGAKEVALAVVS 99 (1027)
Q Consensus 21 ~I~V~VRVRPl~~~E~~~~~~~~~~~~~~-~tii~~~~~~~~~rs~~~~sF~FD~VF~~~asQeeVYe~~v~plV~svL~ 99 (1027)
+|+|+||+||+.+.|...+...++.+... ..++..+ .+.|.||+||+++++|++||+.+++|+|+++++
T Consensus 2 ~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~~~----------~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~~~ 71 (341)
T cd01372 2 SVRVAVRVRPLLPKELLEGCQVCVSVVPGEPQVTVGT----------DKSFTFDYVFDPSTSQEEVYNTCVAPLVDGLFE 71 (341)
T ss_pred CeEEEEECCCCCchhcccCCCeEEEEeCCCCEEEecC----------CcEEeccccCCCCCCHHHHHHHHHHHHHHHHhC
Confidence 69999999999999987777767666543 3444322 468999999999999999999999999999999
Q ss_pred CCCeeEEEecccCCCCccccc------------CChhhHHHHHHHHHHhccc-cceeEeeeeeEeeccccccccCCC---
Q 001693 100 GINSSVFAYGQTSSGKTYTMI------------GITEYTMSDIYDYIEKHKE-REFVLKFSAMEIYNESVRDLLSAD--- 163 (1027)
Q Consensus 100 G~NatIfAYGQTGSGKTyTM~------------GIi~rav~dLF~~Ie~~~e-~~f~V~vS~lEIYnE~V~DLL~~~--- 163 (1027)
|||+||||||||||||||||+ ||+|+++++||+.++...+ ..|.|.|||+|||||+|+|||.+.
T Consensus 72 G~n~~i~ayG~tgSGKT~Tm~G~~~~~~~~~~~Giipr~~~~LF~~~~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~ 151 (341)
T cd01372 72 GYNATVLAYGQTGSGKTYTMGTAFTASEDEEEVGIIPRAIQHIFKKIDEKKDEPDFQLKVSFLELYNEEVRDLLSPSTSE 151 (341)
T ss_pred CCccceeeecCCCCCCcEEecCCCccccccccCChHHHHHHHHHHHHHhccccceEEEEEEEEEeECCeeecCCCCcccC
Confidence 999999999999999999996 5899999999999987765 789999999999999999999987
Q ss_pred CCCceeecCCCCCeEecCCeeEEecCHHHHHHHHHHhhhhhccccccCCCcCCCceeEEEEEEEeecccccC------CC
Q 001693 164 TSPLRLLDDPERGTIVEKLTEETLKDWNHLKELLSTCEAQRQIGETSLNETSSRSHQILRLTVESSACEFIG------ND 237 (1027)
Q Consensus 164 ~~~L~i~ed~~~g~~V~gLtev~V~S~ee~~~LL~~g~~~R~~~sT~~N~~SSRSH~IftI~Ve~~~~e~~g------~~ 237 (1027)
...+.+++++.++++|.|++++.|.++++++.+|..|.++|+.++|.+|..|||||+||+|+|.+....... ..
T Consensus 152 ~~~l~i~e~~~~~~~i~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~sSRsH~i~~i~v~~~~~~~~~~~~~~~~~ 231 (341)
T cd01372 152 KSPIQIREDSKGNIIIVGLTEVTVNSAQEVMSCLEQGSLSRTTASTAMNSQSSRSHAIFTITLEQTRKNGPIAPMSGDDK 231 (341)
T ss_pred CCCceEEECCCCCEecCCCEEEEECCHHHHHHHHHHHHHhcccccccCCCccCcCcEEEEEEEEEEecCCccccccccCC
Confidence 468999999999999999999999999999999999999999999999999999999999999987643110 22
Q ss_pred CcceeeeEEEEecCCCccccccccchhhhhhhhhhhhhHHHHHHHHHHhcCCC--CCccccCCchhhhhhhhccCCCccc
Q 001693 238 PSSLTATVNFVDLAGSERASQALSAGTRLKEGCHINRSLLTLGTVIRKLSKGR--NGHVPFRDSKLTRILQSSLGGNART 315 (1027)
Q Consensus 238 ~s~~~SkL~fVDLAGSER~skt~s~g~rlkEg~~INkSL~aLg~VI~aLs~~k--~~hIPYRDSKLTrLLqdSLGGNskT 315 (1027)
.....|+|+||||||+|+..+++..|.+++|+..||+||++|++||.+|+.+. ..|||||+||||+||+++||||++|
T Consensus 232 ~~~~~s~l~~VDLAGsE~~~~~~~~~~~~~e~~~in~sl~aL~~vi~al~~~~~~~~~ipyR~S~LT~lL~~~Lgg~s~t 311 (341)
T cd01372 232 NSTLTSKFHFVDLAGSERLKKTGATGDRLKEGISINSGLLALGNVISALGDESKKGSHVPYRDSKLTRLLQDSLGGNSHT 311 (341)
T ss_pred CceeeEEEEEEECCCCcccccccCchhHhHHHHHHhHHHHHHHHHHHHHHhcCCCCCCCCCcccHHHHHHHHhcCCCceE
Confidence 33678999999999999999999999999999999999999999999999765 3799999999999999999999999
Q ss_pred eeeeecCCCCcchHHHHHHHHHHHHhhccc
Q 001693 316 AIICTLSPARSHVEQSRNTLLFASCAKEVT 345 (1027)
Q Consensus 316 ~mIatISPs~~~~eETlsTLrFAsRAK~Ik 345 (1027)
+||+||||...+++||++||+||+|||+||
T Consensus 312 ~~I~~vsp~~~~~~eTl~tL~~a~~~~~ik 341 (341)
T cd01372 312 LMIACVSPADSNFEETLNTLKYANRARNIK 341 (341)
T ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhccCC
Confidence 999999999999999999999999999986
No 20
>cd01375 KISc_KIF9_like Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80
Probab=100.00 E-value=2.3e-69 Score=603.84 Aligned_cols=314 Identities=34% Similarity=0.490 Sum_probs=277.4
Q ss_pred CeEEEEEeCCCChhhhhcCCCcceEee-CCCEEEecCCcccc----cCCcCCceeecceeeCCCCChhhHHHhhHHHHHH
Q 001693 21 RIFVSVRLRPLNEKEIARNDVSDWECI-NDSTIIYRNNLSVA----ERSMYPTSYTFDRVFSCDCTTRKVYEEGAKEVAL 95 (1027)
Q Consensus 21 ~I~V~VRVRPl~~~E~~~~~~~~~~~~-~~~tii~~~~~~~~----~rs~~~~sF~FD~VF~~~asQeeVYe~~v~plV~ 95 (1027)
+|+|+||+||+...+. . .+.+. ++.++....+.... ........|.||+||++ ++|++||+.++.|+|+
T Consensus 1 ~i~V~vRvRP~~~~~~----~-~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~f~FD~vf~~-~~q~~vy~~~~~p~v~ 74 (334)
T cd01375 1 TIQVFVRVRPTPTKQG----S-SIKLGPDGKSVSSNLPKDLVRGVVNNQQEDFSFKFDGVFHN-ASQEEVYETVAKPVVD 74 (334)
T ss_pred CeEEEEECCCCCCCCC----c-cEEEcCCCCEEEEecccccccccccCCcCceEEEcCcccCC-CCHHHHHHHHHHHHHH
Confidence 4899999999987432 1 22333 32333322211100 01123568999999999 9999999999999999
Q ss_pred HHhcCCCeeEEEecccCCCCccccc---------CChhhHHHHHHHHHHhccccceeEeeeeeEeeccccccccCCCC--
Q 001693 96 AVVSGINSSVFAYGQTSSGKTYTMI---------GITEYTMSDIYDYIEKHKEREFVLKFSAMEIYNESVRDLLSADT-- 164 (1027)
Q Consensus 96 svL~G~NatIfAYGQTGSGKTyTM~---------GIi~rav~dLF~~Ie~~~e~~f~V~vS~lEIYnE~V~DLL~~~~-- 164 (1027)
++++|+|+||||||||||||||||+ ||+|+++.+||+.++...+..|.|++||+|||||+|+|||++..
T Consensus 75 ~~~~G~n~~i~ayG~tgSGKTyTm~G~~~~~~~~Glipr~~~~lf~~~~~~~~~~~~v~~S~~Eiy~e~v~DLL~~~~~~ 154 (334)
T cd01375 75 SALDGYNGTIFAYGQTGAGKTFTMTGGTESYKDRGLIPRALEQVFREVAMRATKTYTVHVSYLEIYNEQLYDLLGDTPEA 154 (334)
T ss_pred HHhCCCccceeeecCCCCCCeEEccCCCCcccCCchHHHHHHHHHHHHHhccCcceEEEEEEEEEECCEeecCCCCCccc
Confidence 9999999999999999999999997 59999999999999998888999999999999999999999874
Q ss_pred ----CCceeecCCCCCeEecCCeeEEecCHHHHHHHHHHhhhhhccccccCCCcCCCceeEEEEEEEeecccccCCCCcc
Q 001693 165 ----SPLRLLDDPERGTIVEKLTEETLKDWNHLKELLSTCEAQRQIGETSLNETSSRSHQILRLTVESSACEFIGNDPSS 240 (1027)
Q Consensus 165 ----~~L~i~ed~~~g~~V~gLtev~V~S~ee~~~LL~~g~~~R~~~sT~~N~~SSRSH~IftI~Ve~~~~e~~g~~~s~ 240 (1027)
..+.+++++.++++|+|++++.|.+++|++.++..|..+|.+++|.+|..|||||+||+|+|.+...+. .....
T Consensus 155 ~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~~~~~g~~~R~~~~t~~n~~sSRSH~i~~l~v~~~~~~~--~~~~~ 232 (334)
T cd01375 155 LESLPAVTILEDSEQNIHVKGLSLHSATTEEEALNLLFLGETNRTIAETSMNQASSRSHCIFTIHLESRSREA--GSEVV 232 (334)
T ss_pred cccCCceEEEEcCCCCEEeCCcEEEEeCCHHHHHHHHHHHHhhcccccCcCcCCcCcCeEEEEEEEEEEecCC--CCCce
Confidence 578999999999999999999999999999999999999999999999999999999999999875432 23346
Q ss_pred eeeeEEEEecCCCccccccccchhhhhhhhhhhhhHHHHHHHHHHhcCCCCCccccCCchhhhhhhhccCCCccceeeee
Q 001693 241 LTATVNFVDLAGSERASQALSAGTRLKEGCHINRSLLTLGTVIRKLSKGRNGHVPFRDSKLTRILQSSLGGNARTAIICT 320 (1027)
Q Consensus 241 ~~SkL~fVDLAGSER~skt~s~g~rlkEg~~INkSL~aLg~VI~aLs~~k~~hIPYRDSKLTrLLqdSLGGNskT~mIat 320 (1027)
..++|+||||||||+..+++..+..++|+.+||+||.+|++||.+|+.+...||||||||||+||+|+|||||+|+||||
T Consensus 233 ~~s~l~~VDLAGsEr~~~~~~~~~~~~e~~~iN~SL~~L~~vi~~l~~~~~~~ipyRdSkLT~lL~d~Lgg~~~t~~I~~ 312 (334)
T cd01375 233 RLSKLNLVDLAGSERVSKTGVSGQVLKEAKYINKSLSFLEQVINALSEKARTHVPYRNSKLTHVLRDSLGGNCKTVMLAT 312 (334)
T ss_pred EEEEEEEEECCCCCccccccCchhhhhhhhhhhhhHHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHhcCCCceEEEEEE
Confidence 78999999999999999999999999999999999999999999999877679999999999999999999999999999
Q ss_pred cCCCCcchHHHHHHHHHHHHhh
Q 001693 321 LSPARSHVEQSRNTLLFASCAK 342 (1027)
Q Consensus 321 ISPs~~~~eETlsTLrFAsRAK 342 (1027)
|||+..+++||++||+||+|++
T Consensus 313 vsp~~~~~~eTl~TL~fa~r~~ 334 (334)
T cd01375 313 IWVEPSNLDETLSTLRFAQRVA 334 (334)
T ss_pred eCCchhhHHHHHHHHHHHHhcC
Confidence 9999999999999999999985
No 21
>cd01366 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for mi
Probab=100.00 E-value=3.7e-68 Score=592.04 Aligned_cols=315 Identities=37% Similarity=0.553 Sum_probs=287.4
Q ss_pred CCeEEEEEeCCCChhhhhcCCCcceEeeCC--CEEEecCCcccccCCcCCceeecceeeCCCCChhhHHHhhHHHHHHHH
Q 001693 20 ERIFVSVRLRPLNEKEIARNDVSDWECIND--STIIYRNNLSVAERSMYPTSYTFDRVFSCDCTTRKVYEEGAKEVALAV 97 (1027)
Q Consensus 20 e~I~V~VRVRPl~~~E~~~~~~~~~~~~~~--~tii~~~~~~~~~rs~~~~sF~FD~VF~~~asQeeVYe~~v~plV~sv 97 (1027)
++|+|+||+||+...|. .....++.+.+. .++.+.+. ....+.|.||+||+++++|++||+. +.|+|+++
T Consensus 2 ~~i~V~vRirP~~~~e~-~~~~~~~~~~~~~~~~i~~~~~------~~~~~~f~fD~vf~~~~~q~~v~~~-v~p~v~~~ 73 (329)
T cd01366 2 GNIRVFCRVRPLLPSES-TEYSSVISFPDEDGGTIELSKG------TGKKKSFSFDRVFDPDASQEDVFEE-VSPLVQSA 73 (329)
T ss_pred CCEEEEEEcCcCCcccc-CCCccEEEEcCCCceEEEEeCC------CCCceEEecCEEECCCCCHHHHHHH-HHHHHHHH
Confidence 67999999999998876 344556666665 56655443 2235689999999999999999998 59999999
Q ss_pred hcCCCeeEEEecccCCCCccccc------CChhhHHHHHHHHHHhcc--ccceeEeeeeeEeeccccccccCCC---CCC
Q 001693 98 VSGINSSVFAYGQTSSGKTYTMI------GITEYTMSDIYDYIEKHK--EREFVLKFSAMEIYNESVRDLLSAD---TSP 166 (1027)
Q Consensus 98 L~G~NatIfAYGQTGSGKTyTM~------GIi~rav~dLF~~Ie~~~--e~~f~V~vS~lEIYnE~V~DLL~~~---~~~ 166 (1027)
++|+|+||||||+|||||||||+ ||+|+++++||+.++... ...|.|.+||+|||||+|+|||++. ..+
T Consensus 74 ~~G~~~~i~ayG~tgSGKT~tl~G~~~~~Gli~r~~~~lf~~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~~~~~~ 153 (329)
T cd01366 74 LDGYNVCIFAYGQTGSGKTYTMEGPPENPGIIPRALEQLFNTAEELKEKGWSYTITASMLEIYNETIRDLLATKPAPKKK 153 (329)
T ss_pred hCCCceEEEEeCCCCCCCcEEecCCCCCCCcHHHHHHHHHHHHHhhhccCceEEEEEEEEEEECCEeEECCCCCcCCCCc
Confidence 99999999999999999999997 589999999999998765 4789999999999999999999987 578
Q ss_pred ceeecCCCCCeEecCCeeEEecCHHHHHHHHHHhhhhhccccccCCCcCCCceeEEEEEEEeecccccCCCCcceeeeEE
Q 001693 167 LRLLDDPERGTIVEKLTEETLKDWNHLKELLSTCEAQRQIGETSLNETSSRSHQILRLTVESSACEFIGNDPSSLTATVN 246 (1027)
Q Consensus 167 L~i~ed~~~g~~V~gLtev~V~S~ee~~~LL~~g~~~R~~~sT~~N~~SSRSH~IftI~Ve~~~~e~~g~~~s~~~SkL~ 246 (1027)
+.+++++.++++|.|++++.|.+++++..++..|.++|.++.|.+|..|||||+||+|+|.+.... ......|+|+
T Consensus 154 l~i~~~~~~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~sSRsH~i~~i~v~~~~~~----~~~~~~s~l~ 229 (329)
T cd01366 154 LEIKHDSKGETYVTNLTEVPVSSPEEVTRLLNLGSKNRSVASTNMNEHSSRSHAVFQLKIRGTNLQ----TGEQTRGKLN 229 (329)
T ss_pred eEEEECCCCCEEecCCEEEEeCCHHHHHHHHHHHHhhcccccccccCCCCCccEEEEEEEEEEcCC----CCcEEEEEEE
Confidence 999999999999999999999999999999999999999999999999999999999999886542 3346789999
Q ss_pred EEecCCCccccccccchhhhhhhhhhhhhHHHHHHHHHHhcCCCCCccccCCchhhhhhhhccCCCccceeeeecCCCCc
Q 001693 247 FVDLAGSERASQALSAGTRLKEGCHINRSLLTLGTVIRKLSKGRNGHVPFRDSKLTRILQSSLGGNARTAIICTLSPARS 326 (1027)
Q Consensus 247 fVDLAGSER~skt~s~g~rlkEg~~INkSL~aLg~VI~aLs~~k~~hIPYRDSKLTrLLqdSLGGNskT~mIatISPs~~ 326 (1027)
||||||+|+..+.+..+.+++|+..||+||.+|++||.+|+.+ ..|||||+||||+||+++||||++|+|||||||...
T Consensus 230 ~VDLaGsE~~~~~~~~~~~~~e~~~in~Sl~~L~~vl~~l~~~-~~~ipyr~S~LT~lL~~~l~g~~~t~~i~~vsp~~~ 308 (329)
T cd01366 230 LVDLAGSERLKKSGATGDRLKEAQAINKSLSALGDVISALRSK-DSHVPYRNSKLTYLLQDSLGGNSKTLMFVNISPLES 308 (329)
T ss_pred EEECCCCcccccccccchhhHhHhhhhhHHHHHHHHHHHHhcC-CCcCCCcccHhHHHHHHhcCCCceEEEEEEeCCchh
Confidence 9999999999999999999999999999999999999999986 569999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHhhccccc
Q 001693 327 HVEQSRNTLLFASCAKEVTTN 347 (1027)
Q Consensus 327 ~~eETlsTLrFAsRAK~Ikn~ 347 (1027)
+++||++||+||+||++|++.
T Consensus 309 ~~~etl~tL~~a~~~~~i~~~ 329 (329)
T cd01366 309 NLSETLCSLRFASRVRSVELG 329 (329)
T ss_pred hHHHHHHHHHHHHHhhcccCC
Confidence 999999999999999999873
No 22
>smart00129 KISc Kinesin motor, catalytic domain. ATPase. Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.
Probab=100.00 E-value=2.8e-67 Score=585.66 Aligned_cols=325 Identities=42% Similarity=0.637 Sum_probs=298.9
Q ss_pred CeEEEEEeCCCChhhhhcCCCcceEeeCCC--EEEecCCcccccCCcCCceeecceeeCCCCChhhHHHhhHHHHHHHHh
Q 001693 21 RIFVSVRLRPLNEKEIARNDVSDWECINDS--TIIYRNNLSVAERSMYPTSYTFDRVFSCDCTTRKVYEEGAKEVALAVV 98 (1027)
Q Consensus 21 ~I~V~VRVRPl~~~E~~~~~~~~~~~~~~~--tii~~~~~~~~~rs~~~~sF~FD~VF~~~asQeeVYe~~v~plV~svL 98 (1027)
+|+|+|||||++..|...+..++|.+.+.. +|...... ....+..|.||+||+++++|++||+.++.|+|+.++
T Consensus 1 ~v~v~vRvrP~~~~e~~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~~~f~fD~vf~~~~~q~~v~~~~~~p~v~~~~ 76 (335)
T smart00129 1 NIRVVVRVRPLNKREKSRKSPSVVPFDDKDGKTLNVNSPK----NRKEEKKFTFDKVFGATASQEDVFEETAAPLVDSVL 76 (335)
T ss_pred CcEEEEEcCcCCccchhcCCceEEEEcCCCCCEEEEeCCC----CCCCCeEEecCEEECCCCChHHHHHHHHHHHHHHHh
Confidence 599999999999999888888888887663 55554321 223467899999999999999999999999999999
Q ss_pred cCCCeeEEEecccCCCCccccc------CChhhHHHHHHHHHHhcc-ccceeEeeeeeEeeccccccccCCCCCCceeec
Q 001693 99 SGINSSVFAYGQTSSGKTYTMI------GITEYTMSDIYDYIEKHK-EREFVLKFSAMEIYNESVRDLLSADTSPLRLLD 171 (1027)
Q Consensus 99 ~G~NatIfAYGQTGSGKTyTM~------GIi~rav~dLF~~Ie~~~-e~~f~V~vS~lEIYnE~V~DLL~~~~~~L~i~e 171 (1027)
+|+|+||||||+|||||||||+ ||+|+++++||+.+.... +..|.|+|||+|||+|+|+|||++...++.+++
T Consensus 77 ~G~~~~i~~yG~tgSGKT~tl~G~~~~~Gli~~~~~~Lf~~~~~~~~~~~~~v~~S~~ei~~e~v~DLL~~~~~~l~i~~ 156 (335)
T smart00129 77 EGYNATIFAYGQTGSGKTYTMSGTPDSPGIIPRALKDLFEKIDKLEEGWQFQVKVSYLEIYNEKIRDLLNPSPKKLEIRE 156 (335)
T ss_pred cCCceeEEEeCCCCCCCceEecCCCCCCCHHHHHHHHHHHHhhhcccCceEEEEEEEEEEECCEEEECcCCCCCCcEEEE
Confidence 9999999999999999999999 899999999999997655 568999999999999999999999999999999
Q ss_pred CCCCCeEecCCeeEEecCHHHHHHHHHHhhhhhccccccCCCcCCCceeEEEEEEEeecccccCCCCcceeeeEEEEecC
Q 001693 172 DPERGTIVEKLTEETLKDWNHLKELLSTCEAQRQIGETSLNETSSRSHQILRLTVESSACEFIGNDPSSLTATVNFVDLA 251 (1027)
Q Consensus 172 d~~~g~~V~gLtev~V~S~ee~~~LL~~g~~~R~~~sT~~N~~SSRSH~IftI~Ve~~~~e~~g~~~s~~~SkL~fVDLA 251 (1027)
++.+++++.|++++.|.+++++..++..|..+|.+++|.+|..|||||+||+|+|.+.... ........++|+|||||
T Consensus 157 ~~~~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRsH~i~~l~v~~~~~~--~~~~~~~~s~l~~VDLa 234 (335)
T smart00129 157 DKKGGVYVKGLTEISVSSFEEVYNLLEKGNKNRTVAATKMNEESSRSHAVFTITVESKIKN--SSSGSGKASKLNLVDLA 234 (335)
T ss_pred CCCCCEEecCCEEEEeCCHHHHHHHHHHHHhccccccCCCCCCCCcceEEEEEEEEEEecC--CCCCCEEEEEEEEEECC
Confidence 9999999999999999999999999999999999999999999999999999999976322 23334688999999999
Q ss_pred CCccccccccchhhhhhhhhhhhhHHHHHHHHHHhcCC-CCCccccCCchhhhhhhhccCCCccceeeeecCCCCcchHH
Q 001693 252 GSERASQALSAGTRLKEGCHINRSLLTLGTVIRKLSKG-RNGHVPFRDSKLTRILQSSLGGNARTAIICTLSPARSHVEQ 330 (1027)
Q Consensus 252 GSER~skt~s~g~rlkEg~~INkSL~aLg~VI~aLs~~-k~~hIPYRDSKLTrLLqdSLGGNskT~mIatISPs~~~~eE 330 (1027)
|+|+....+..|.+++|+..||+||.+|++||.+|+.+ +..|||||+|+||+||+++|||+++|+||+||||...+++|
T Consensus 235 Gse~~~~~~~~~~~~~e~~~in~sl~~L~~~l~~l~~~~~~~~ip~r~S~LT~lL~~~L~g~~~~~~i~~vsp~~~~~~e 314 (335)
T smart00129 235 GSERASKTGAEGDRLKEAGNINKSLSALGNVINALADGQKSRHIPYRDSKLTRLLQDSLGGNSKTLMIANISPSLSNLEE 314 (335)
T ss_pred CCCccccccChhHHHHhhchhhhHHHHHHHHHHHHHhcCCCCCCCCcCcHhHHHHHHHcCCCCeEEEEEEcCCCccchHH
Confidence 99999999999999999999999999999999999985 56799999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcccccceec
Q 001693 331 SRNTLLFASCAKEVTTNAQVN 351 (1027)
Q Consensus 331 TlsTLrFAsRAK~Ikn~~~vN 351 (1027)
|++||+||+++++|+|+|++|
T Consensus 315 Tl~tL~~a~~~~~i~~~p~~~ 335 (335)
T smart00129 315 TLSTLRFASRAKEIKNKAIVN 335 (335)
T ss_pred HHHHHHHHHHHhhcccCCCcC
Confidence 999999999999999999875
No 23
>cd00106 KISc Kinesin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coil
Probab=100.00 E-value=3.1e-66 Score=575.03 Aligned_cols=317 Identities=43% Similarity=0.648 Sum_probs=289.5
Q ss_pred CeEEEEEeCCCChhhhhcCCCcceEeeCCCEEEecCCcccccCCcCCceeecceeeCCCCChhhHHHhhHHHHHHHHhcC
Q 001693 21 RIFVSVRLRPLNEKEIARNDVSDWECINDSTIIYRNNLSVAERSMYPTSYTFDRVFSCDCTTRKVYEEGAKEVALAVVSG 100 (1027)
Q Consensus 21 ~I~V~VRVRPl~~~E~~~~~~~~~~~~~~~tii~~~~~~~~~rs~~~~sF~FD~VF~~~asQeeVYe~~v~plV~svL~G 100 (1027)
+|+|+||+||+...| ..+...++.+.++.++++..+. ......++.|.||+||+++++|++||+.++.|+|+++++|
T Consensus 1 ~i~V~vRvrP~~~~~-~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~~~f~fd~vf~~~~~q~~v~~~~~~~~v~~~~~G 77 (328)
T cd00106 1 NIRVVVRIRPLNGRE-SKSEESCITVDDNKTVTLTPPK--DGRKAGPKSFTFDHVFDPNSTQEDVYETTAKPLVESVLEG 77 (328)
T ss_pred CeEEEEEcCCCCccc-ccCCCcEEEECCCCEEEEecCc--cccCcCceEEECCeEEcCCCCHHHHHHHHHHHHHHHHhCC
Confidence 599999999998877 3455677777776777776543 1133446799999999999999999999999999999999
Q ss_pred CCeeEEEecccCCCCcccccC------ChhhHHHHHHHHHHhcc--ccceeEeeeeeEeeccccccccCCC--CCCceee
Q 001693 101 INSSVFAYGQTSSGKTYTMIG------ITEYTMSDIYDYIEKHK--EREFVLKFSAMEIYNESVRDLLSAD--TSPLRLL 170 (1027)
Q Consensus 101 ~NatIfAYGQTGSGKTyTM~G------Ii~rav~dLF~~Ie~~~--e~~f~V~vS~lEIYnE~V~DLL~~~--~~~L~i~ 170 (1027)
+|+||||||+|||||||||+| |+|+++++||+.+.... ...|.|.+||+|||+|+|+|||++. ..++.++
T Consensus 78 ~~~~i~~yG~tgSGKT~tl~G~~~~~Gli~~~~~~Lf~~~~~~~~~~~~~~v~~S~~Ei~~e~v~DLL~~~~~~~~l~i~ 157 (328)
T cd00106 78 YNGTIFAYGQTGSGKTYTMFGSPKDPGIIPRALEDLFNLIDERKEKNKSFSVSVSYLEIYNEKVYDLLSPEPPSKPLSLR 157 (328)
T ss_pred CceeEEEecCCCCCCeEEecCCCCCCchHHHHHHHHHHHHhhccccCceEEEEEEEEEEECCEeEECCCCCCCCCCcEEE
Confidence 999999999999999999996 99999999999998876 5789999999999999999999998 8899999
Q ss_pred cCCCCCeEecCCeeEEecCHHHHHHHHHHhhhhhccccccCCCcCCCceeEEEEEEEeecccccCCCCcceeeeEEEEec
Q 001693 171 DDPERGTIVEKLTEETLKDWNHLKELLSTCEAQRQIGETSLNETSSRSHQILRLTVESSACEFIGNDPSSLTATVNFVDL 250 (1027)
Q Consensus 171 ed~~~g~~V~gLtev~V~S~ee~~~LL~~g~~~R~~~sT~~N~~SSRSH~IftI~Ve~~~~e~~g~~~s~~~SkL~fVDL 250 (1027)
+++.+++++.|++++.|.+++++..++..|.++|.++.|.+|..|||||+||+|+|.+..... .......|+|+||||
T Consensus 158 ~~~~~~~~v~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~--~~~~~~~s~l~~VDL 235 (328)
T cd00106 158 EDPKGGVYVKGLTEVEVGSAEDALSLLQKGLKNRTTASTAMNERSSRSHAIFTIHVEQRNTTN--DGRSIKSSKLNLVDL 235 (328)
T ss_pred EcCCCCEEEeCCEEEEeCCHHHHHHHHHHHHhhcCcccCcCCCCcCcCcEEEEEEEEEEecCC--CCccEEEEEEEEEEC
Confidence 999999999999999999999999999999999999999999999999999999999876432 111367899999999
Q ss_pred CCCccccccccchhhhhhhhhhhhhHHHHHHHHHHhcCCC-CCccccCCchhhhhhhhccCCCccceeeeecCCCCcchH
Q 001693 251 AGSERASQALSAGTRLKEGCHINRSLLTLGTVIRKLSKGR-NGHVPFRDSKLTRILQSSLGGNARTAIICTLSPARSHVE 329 (1027)
Q Consensus 251 AGSER~skt~s~g~rlkEg~~INkSL~aLg~VI~aLs~~k-~~hIPYRDSKLTrLLqdSLGGNskT~mIatISPs~~~~e 329 (1027)
||+|+..+.+..+.+++|+..||+||.+|++||.+|+.+. ..|||||+||||+||+|+|||+++|+|||||+|...+++
T Consensus 236 aGse~~~~~~~~~~~~~e~~~in~sl~~L~~vl~~l~~~~~~~~ip~r~SkLT~lL~~~l~g~~~t~~I~~vsp~~~~~~ 315 (328)
T cd00106 236 AGSERAKKTGAEGDRLKEAKNINKSLSALGNVISALSSGQKKKHIPYRDSKLTRLLQDSLGGNSKTLMIANISPSSENYD 315 (328)
T ss_pred CCCCcccccCCchhhhHhHHhhhhhHHHHHHHHHHHHhcCCCCcCCCcCcHHHHHHHHhcCCCCeEEEEEEeCCchhhHH
Confidence 9999999988999999999999999999999999999876 579999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhh
Q 001693 330 QSRNTLLFASCAK 342 (1027)
Q Consensus 330 ETlsTLrFAsRAK 342 (1027)
||++||+||+|||
T Consensus 316 eTl~tL~~a~r~~ 328 (328)
T cd00106 316 ETLSTLRFASRAK 328 (328)
T ss_pred HHHHHHHHHHhcC
Confidence 9999999999986
No 24
>PF00225 Kinesin: Kinesin motor domain; InterPro: IPR001752 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. The kinesin motor domain is located in the N-terminal part of most of the above proteins, with the exception of KAR3, klpA, and ncd where it is located in the C-terminal section. The kinesin motor domain contains about 330 amino acids. An ATP-binding motif of type A is found near position 80 to 90, the C-terminal half of the domain is involved in microtubule-binding.; GO: 0003777 microtubule motor activity, 0005524 ATP binding, 0007018 microtubule-based movement; PDB: 3NWN_A 2Y5W_A 2Y65_C 3BFN_A 2WBE_C 2ZFL_A 2ZFI_A 1I6I_A 2ZFM_A 1IA0_K ....
Probab=100.00 E-value=6.1e-67 Score=582.22 Aligned_cols=315 Identities=42% Similarity=0.638 Sum_probs=277.9
Q ss_pred EeCCCChhhhhcCCCcceEeeCCC--EEEecCCcccccCCcCCceeecceeeCCCCChhhHHHhhHHHHHHHHhcCCCee
Q 001693 27 RLRPLNEKEIARNDVSDWECINDS--TIIYRNNLSVAERSMYPTSYTFDRVFSCDCTTRKVYEEGAKEVALAVVSGINSS 104 (1027)
Q Consensus 27 RVRPl~~~E~~~~~~~~~~~~~~~--tii~~~~~~~~~rs~~~~sF~FD~VF~~~asQeeVYe~~v~plV~svL~G~Nat 104 (1027)
||||++..|...+....+.+.+.. ....... .........|.||+||+++++|++||+.++.|+|+++++|+|+|
T Consensus 1 RvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~~~v~~~l~G~n~~ 77 (335)
T PF00225_consen 1 RVRPLNESEKESSAESIVSVDNQDSNQNKQSVN---SNNSQKEKSFRFDRVFDEDATQEDVYEEVVSPLVDSVLDGYNAT 77 (335)
T ss_dssp EEES-CHHHHHTTTEBCEEEETTETEEEEEETT---EEETTEEEEEEESEEEETTSTHHHHHHHHTHHHHHHHHTT-EEE
T ss_pred CcCCCCHHHHhCCCcEEEEecCCcccccccccc---ccCCCCceEEEcCeEECCCCCHHHHHHHHHHHHHHHhhcCCceE
Confidence 999999999999888877776421 1111111 22233467899999999999999999999999999999999999
Q ss_pred EEEecccCCCCcccccC--------ChhhHHHHHHHHHHhccc---cceeEeeeeeEeeccccccccCCCC----CCcee
Q 001693 105 VFAYGQTSSGKTYTMIG--------ITEYTMSDIYDYIEKHKE---REFVLKFSAMEIYNESVRDLLSADT----SPLRL 169 (1027)
Q Consensus 105 IfAYGQTGSGKTyTM~G--------Ii~rav~dLF~~Ie~~~e---~~f~V~vS~lEIYnE~V~DLL~~~~----~~L~i 169 (1027)
|||||+|||||||||+| |+|+++++||..++...+ ..|.|+|||+|||||+|+|||++.. .++.+
T Consensus 78 i~ayG~tgSGKT~Tm~G~~~~~~~Gli~~~~~~lf~~~~~~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~~~~~l~i 157 (335)
T PF00225_consen 78 IFAYGQTGSGKTYTMFGSNDPSEPGLIPRALRDLFSQIEERKEKSGYEFSVSVSYLEIYNEKVYDLLSPNNSKSRKPLKI 157 (335)
T ss_dssp EEEEESTTSSHHHHHTBSTSTTTBSHHHHHHHHHHHHHHHHTTTSTEEEEEEEEEEEEETTEEEETTSTTSSSTTSEBEE
T ss_pred EEeeccccccccccccccccccccchhhhHHHHHhhhhccccccccccccccccchhhhhhhhhhhcCccccccccccce
Confidence 99999999999999996 799999999999998765 4899999999999999999999883 57999
Q ss_pred ecCCCCC-eEecCCeeEEecCHHHHHHHHHHhhhhhccccccCCCcCCCceeEEEEEEEeecccccCCCCcceeeeEEEE
Q 001693 170 LDDPERG-TIVEKLTEETLKDWNHLKELLSTCEAQRQIGETSLNETSSRSHQILRLTVESSACEFIGNDPSSLTATVNFV 248 (1027)
Q Consensus 170 ~ed~~~g-~~V~gLtev~V~S~ee~~~LL~~g~~~R~~~sT~~N~~SSRSH~IftI~Ve~~~~e~~g~~~s~~~SkL~fV 248 (1027)
++++..| ++|.|++++.|.+++++..+|..|.++|.++.|.+|..|||||+||+|+|.+..............|+|+||
T Consensus 158 ~~~~~~g~~~i~~l~~~~v~s~~~~~~~l~~~~~~R~~~~t~~n~~sSRSH~i~~i~v~~~~~~~~~~~~~~~~s~l~~v 237 (335)
T PF00225_consen 158 REDSNKGSVYIKGLTEVEVKSAEEALQLLKKGQKNRRTASTKMNARSSRSHAIFTIHVEQKDRDPSDDEESVKHSRLTFV 237 (335)
T ss_dssp EEETTTEEEEETTSEEEEESSHHHHHHHHHHHHHHHTCTSSSCTHHGGGSEEEEEEEEEEEETTTTTEEEEEEEEEEEEE
T ss_pred eeccccccceeeccccccccccccccccccchhhccccccccccccccccccccccccccccccccccccceeecceeee
Confidence 9999977 999999999999999999999999999999999999999999999999999876542211112578999999
Q ss_pred ecCCCcccccccc-chhhhhhhhhhhhhHHHHHHHHHHhcCC-CCCccccCCchhhhhhhhccCCCccceeeeecCCCCc
Q 001693 249 DLAGSERASQALS-AGTRLKEGCHINRSLLTLGTVIRKLSKG-RNGHVPFRDSKLTRILQSSLGGNARTAIICTLSPARS 326 (1027)
Q Consensus 249 DLAGSER~skt~s-~g~rlkEg~~INkSL~aLg~VI~aLs~~-k~~hIPYRDSKLTrLLqdSLGGNskT~mIatISPs~~ 326 (1027)
||||+|+..+... .+.+++|+..||+||.+|++||.+|+.+ ...|||||+||||+||+|+|||||+|+||+||+|...
T Consensus 238 DLaGsE~~~~~~~~~~~~~~e~~~in~Sl~~L~~vi~~L~~~~~~~~vpyr~SkLT~lL~d~l~g~s~t~~I~~vsp~~~ 317 (335)
T PF00225_consen 238 DLAGSERLKKSGASDGQRLKESSNINKSLSALGNVIRALAQGSKQSHVPYRDSKLTRLLKDSLGGNSKTILIVCVSPSSE 317 (335)
T ss_dssp EEEESTGGCGCSSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTSTSSSCGGGSHHHHHTGGGTSSSSEEEEEEEE-SBGG
T ss_pred ecccccccccccccccccccccceecchhhhhhhhHhhhhccccchhhhhhcccccceecccccccccceeEEEcCCccc
Confidence 9999999998886 4788999999999999999999999987 5679999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHhhcc
Q 001693 327 HVEQSRNTLLFASCAKEV 344 (1027)
Q Consensus 327 ~~eETlsTLrFAsRAK~I 344 (1027)
+++||++||+||++||+|
T Consensus 318 ~~~eTl~tL~fa~~~~~I 335 (335)
T PF00225_consen 318 DYEETLSTLRFASRAREI 335 (335)
T ss_dssp GHHHHHHHHHHHHHHTTE
T ss_pred cHHHHHHHHHHHHHHcCC
Confidence 999999999999999987
No 25
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=100.00 E-value=6.5e-67 Score=623.00 Aligned_cols=324 Identities=35% Similarity=0.512 Sum_probs=286.5
Q ss_pred CCCeEEEEEeCCCChhhhhcCCCcceEeeCC-CEEEecCCcccccCCcCCceeecceeeCCCCChhhHHHhhHHHHHHHH
Q 001693 19 PERIFVSVRLRPLNEKEIARNDVSDWECIND-STIIYRNNLSVAERSMYPTSYTFDRVFSCDCTTRKVYEEGAKEVALAV 97 (1027)
Q Consensus 19 ~e~I~V~VRVRPl~~~E~~~~~~~~~~~~~~-~tii~~~~~~~~~rs~~~~sF~FD~VF~~~asQeeVYe~~v~plV~sv 97 (1027)
.++|+|+|||||+...+.... ...+...++ ..++...+. ......+..|.||+||+|.++|++||.+ +.|+|.++
T Consensus 313 kGnIRV~CRvRP~~~~e~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~f~fdkVf~p~~sQ~~VF~e-~~~lv~S~ 388 (670)
T KOG0239|consen 313 KGNIRVFCRVRPLLPSEKQRL-QSKVIDTEEQGEVQVDSPD--KGDKLEPQSFKFDKVFGPLASQDDVFEE-VSPLVQSA 388 (670)
T ss_pred hcCceEEEEecCCCccccccc-cccccccCCcceeEeecCC--CCCCCccccceeeeecCCcccHHHHHHH-HHHHHHHH
Confidence 468999999999999887652 222332232 234443332 2233334479999999999999999998 89999999
Q ss_pred hcCCCeeEEEecccCCCCcccccC-------ChhhHHHHHHHHHHhcc-ccceeEeeeeeEeeccccccccCCCC--CCc
Q 001693 98 VSGINSSVFAYGQTSSGKTYTMIG-------ITEYTMSDIYDYIEKHK-EREFVLKFSAMEIYNESVRDLLSADT--SPL 167 (1027)
Q Consensus 98 L~G~NatIfAYGQTGSGKTyTM~G-------Ii~rav~dLF~~Ie~~~-e~~f~V~vS~lEIYnE~V~DLL~~~~--~~L 167 (1027)
++|||+||||||||||||||||.| |+|+++.+||..+.... .+.|.+.++|+|||||.|+|||.++. ..+
T Consensus 389 lDGYnVCIFAYGQTGSGKTyTM~G~~~~~~Giipral~~lF~~~~~~~~g~~y~~~~s~~EIYNe~i~DlL~~~~~~~k~ 468 (670)
T KOG0239|consen 389 LDGYNVCIFAYGQTGSGKTYTMSGPTPEDPGIIPRALEKLFRTITSLKSGWKYDKTVSMLEIYNEAIRDLLSDESYVGKL 468 (670)
T ss_pred hcCcceeEEEecccCCCccccccCCCcccCCccHHHHHHHHHHHHhhccCceEEeeeehhHHHHHHHHHhccccccccce
Confidence 999999999999999999999985 89999999999998655 58999999999999999999999874 689
Q ss_pred eeecCCCCCeEecCCeeEEecCHHHHHHHHHHhhhhhccccccCCCcCCCceeEEEEEEEeecccccCCCCcceeeeEEE
Q 001693 168 RLLDDPERGTIVEKLTEETLKDWNHLKELLSTCEAQRQIGETSLNETSSRSHQILRLTVESSACEFIGNDPSSLTATVNF 247 (1027)
Q Consensus 168 ~i~ed~~~g~~V~gLtev~V~S~ee~~~LL~~g~~~R~~~sT~~N~~SSRSH~IftI~Ve~~~~e~~g~~~s~~~SkL~f 247 (1027)
.|+++++++++|.+++.+.|.+.+++..++..|..+|++++|.+|++|||||+||+|+|...+. .......+.|+|
T Consensus 469 ~I~~~~~~~~~V~~~t~~~V~s~~~v~~ll~~g~~nRsv~~T~~Ne~SSRSH~v~~v~v~g~~~----~t~~~~~g~l~L 544 (670)
T KOG0239|consen 469 EIVDDAEGNLMVPLLTVIKVGSSEEVDILLEIGLSNRSVASTASNERSSRSHLVFRVRIRGINE----LTGIRVTGVLNL 544 (670)
T ss_pred eEEEcCCCceecccceEEecCCHHHHHHHHHHhhccccccccccchhhhccceEEEEEEecccc----CcccccccceeE
Confidence 9999999999999999999999999999999999999999999999999999999999976532 223367899999
Q ss_pred EecCCCccccccccchhhhhhhhhhhhhHHHHHHHHHHhcCCCCCccccCCchhhhhhhhccCCCccceeeeecCCCCcc
Q 001693 248 VDLAGSERASQALSAGTRLKEGCHINRSLLTLGTVIRKLSKGRNGHVPFRDSKLTRILQSSLGGNARTAIICTLSPARSH 327 (1027)
Q Consensus 248 VDLAGSER~skt~s~g~rlkEg~~INkSL~aLg~VI~aLs~~k~~hIPYRDSKLTrLLqdSLGGNskT~mIatISPs~~~ 327 (1027)
||||||||+++++..|.|++|+.+||+||++||.||.||+. +..||||||||||+|||++|||++||+|+++|||...+
T Consensus 545 VDLAGSER~~~s~~tG~RlkE~Q~INkSLS~LgdVi~AL~~-k~~HiPyRNSKLT~lLq~sLGG~sKTLmfv~isP~~~~ 623 (670)
T KOG0239|consen 545 VDLAGSERVSKSGVTGERLKEAQNINKSLSALGDVISALAS-KRSHIPYRNSKLTQLLQDSLGGDSKTLMFVNISPAAAA 623 (670)
T ss_pred eecccCcccCcCCCchhhhHHHHHhchhhhhhHHHHHHHhh-cCCCCcccccchHHHhHhhhCCccceeeEEEeCccHHH
Confidence 99999999999999999999999999999999999999998 56699999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhhcccccceec
Q 001693 328 VEQSRNTLLFASCAKEVTTNAQVN 351 (1027)
Q Consensus 328 ~eETlsTLrFAsRAK~Ikn~~~vN 351 (1027)
+.||+.+|+||.|++.+...+-.-
T Consensus 624 ~~Etl~sL~FA~rv~~~~lG~a~~ 647 (670)
T KOG0239|consen 624 LFETLCSLRFATRVRSVELGSARK 647 (670)
T ss_pred HhhhhhccchHHHhhceecccccc
Confidence 999999999999999998776553
No 26
>KOG0246 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.6e-65 Score=579.04 Aligned_cols=328 Identities=33% Similarity=0.507 Sum_probs=292.3
Q ss_pred cCCCCCCCCeEEEEEeCCCChhhhhcCCCcceEeeCCCEEEecCCccccc--CCcCCceeecceeeCCCCChhhHHHhhH
Q 001693 13 QSQSGCPERIFVSVRLRPLNEKEIARNDVSDWECINDSTIIYRNNLSVAE--RSMYPTSYTFDRVFSCDCTTRKVYEEGA 90 (1027)
Q Consensus 13 ~~~~~~~e~I~V~VRVRPl~~~E~~~~~~~~~~~~~~~tii~~~~~~~~~--rs~~~~sF~FD~VF~~~asQeeVYe~~v 90 (1027)
.+.+..+.+|.||||-||+|.+|.+..+..++.++....++...+...-+ +....+.|.||++|+..++++.||..++
T Consensus 201 ~~~~v~ehrI~VCVRKRPLnkkE~~~keiDvisvps~~~l~vHEpk~kVDLtkYlEn~~F~FDyaFDe~~sNe~VYrfTa 280 (676)
T KOG0246|consen 201 MGDGVNEHRICVCVRKRPLNKKELTKKEIDVISVPSKNVLVVHEPKLKVDLTKYLENQKFRFDYAFDESASNELVYRFTA 280 (676)
T ss_pred cCCCCccceEEEEeecCCCCchhccccccceEeccccceEEeeccccccchHHHHhhceEEEeeecccccchHHHHHHhh
Confidence 34556678999999999999999999998888887777777665332111 2223678999999999999999999999
Q ss_pred HHHHHHHhcCCCeeEEEecccCCCCccccc------------CChhhHHHHHHHHHHhc--cccceeEeeeeeEeecccc
Q 001693 91 KEVALAVVSGINSSVFAYGQTSSGKTYTMI------------GITEYTMSDIYDYIEKH--KEREFVLKFSAMEIYNESV 156 (1027)
Q Consensus 91 ~plV~svL~G~NatIfAYGQTGSGKTyTM~------------GIi~rav~dLF~~Ie~~--~e~~f~V~vS~lEIYnE~V 156 (1027)
+|||..+|+|--+|+||||||||||||||- ||...+.+|+|..+..- ....+.|.+||||||+.+|
T Consensus 281 ~PlV~~IF~~G~ATCFAYGQTGSGKT~TMggdfsgk~q~~s~giya~aa~Dvf~~L~~p~Y~~~~l~v~~tFFEIYgGKv 360 (676)
T KOG0246|consen 281 KPLVKTIFEGGMATCFAYGQTGSGKTYTMGGDFSGKAQDCSKGIYALAARDVFRLLRQPTYRKLDLKVYVTFFEIYGGKV 360 (676)
T ss_pred hHHHHHHHhCCceeeeeeccCCCCceeecccccCcccccccccchhhhhhHHHHHhcccchhhcceEEEEEEEEEeCcch
Confidence 999999999999999999999999999993 78888999999998753 3567899999999999999
Q ss_pred ccccCCCCCCceeecCCCCCeEecCCeeEEecCHHHHHHHHHHhhhhhccccccCCCcCCCceeEEEEEEEeecccccCC
Q 001693 157 RDLLSADTSPLRLLDDPERGTIVEKLTEETLKDWNHLKELLSTCEAQRQIGETSLNETSSRSHQILRLTVESSACEFIGN 236 (1027)
Q Consensus 157 ~DLL~~~~~~L~i~ed~~~g~~V~gLtev~V~S~ee~~~LL~~g~~~R~~~sT~~N~~SSRSH~IftI~Ve~~~~e~~g~ 236 (1027)
||||+. +..|++++|.+..+.|-||++..|.+.+++++||..|+..|+.+.|..|..|||||+||+|.+....
T Consensus 361 fDLL~~-k~KLrvLEDg~QQVqVVGLqE~~v~~~eeVl~lIe~Gns~RtsG~TsANs~SSRSHAvfQIilr~~~------ 433 (676)
T KOG0246|consen 361 YDLLND-KKKLRVLEDGNQQVQVVGLQEEEVSGVEEVLELIEKGNSCRTSGQTSANSNSSRSHAVFQIILRKHG------ 433 (676)
T ss_pred hhhhcc-ccceEEeecCCceEEEeeceeeeccCHHHHHHHHHhcccccccCcccCcccccccceeEeeeeecCC------
Confidence 999985 7789999999999999999999999999999999999999999999999999999999999986532
Q ss_pred CCcceeeeEEEEecCCCcccccccc-chhhhhhhhhhhhhHHHHHHHHHHhcCCCCCccccCCchhhhhhhhccCC-Ccc
Q 001693 237 DPSSLTATVNFVDLAGSERASQALS-AGTRLKEGCHINRSLLTLGTVIRKLSKGRNGHVPFRDSKLTRILQSSLGG-NAR 314 (1027)
Q Consensus 237 ~~s~~~SkL~fVDLAGSER~skt~s-~g~rlkEg~~INkSL~aLg~VI~aLs~~k~~hIPYRDSKLTrLLqdSLGG-Nsk 314 (1027)
.....|++.||||||+||...+.. ..++..||..||+||+||..||+||..++ .|+|||.||||.+|+|||-| |++
T Consensus 434 -~~k~hGKfSlIDLAGnERGaDts~adRqtRlEGAEINKSLLALKECIRaLg~nk-~H~PFR~SKLTqVLRDSFIGenSr 511 (676)
T KOG0246|consen 434 -EFKLHGKFSLIDLAGNERGADTSSADRQTRLEGAEINKSLLALKECIRALGRNK-SHLPFRGSKLTQVLRDSFIGENSR 511 (676)
T ss_pred -cceeEeEEEEEEccCCccCCcccccchhhhhhhhhhhHHHHHHHHHHHHhcCCC-CCCCchhhhHHHHHHHhhcCCCCc
Confidence 136899999999999999876654 55677899999999999999999998865 49999999999999999988 999
Q ss_pred ceeeeecCCCCcchHHHHHHHHHHHHhhcccccce
Q 001693 315 TAIICTLSPARSHVEQSRNTLLFASCAKEVTTNAQ 349 (1027)
Q Consensus 315 T~mIatISPs~~~~eETlsTLrFAsRAK~Ikn~~~ 349 (1027)
|+||+||||....++.||+|||||+|+|+......
T Consensus 512 TcMIA~ISPg~~ScEhTLNTLRYAdRVKeLsv~~~ 546 (676)
T KOG0246|consen 512 TCMIATISPGISSCEHTLNTLRYADRVKELSVDGG 546 (676)
T ss_pred eEEEEEeCCCcchhhhhHHHHHHHHHHHhhcCCCC
Confidence 99999999999999999999999999999776544
No 27
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=2.8e-64 Score=596.89 Aligned_cols=336 Identities=36% Similarity=0.528 Sum_probs=302.2
Q ss_pred eCCCChhhhhcCCCcceEee-CCCEEEecCCcccccCCcCCceeecceeeCCCCChhhHHHhhHHHHHHHHhcCCCeeEE
Q 001693 28 LRPLNEKEIARNDVSDWECI-NDSTIIYRNNLSVAERSMYPTSYTFDRVFSCDCTTRKVYEEGAKEVALAVVSGINSSVF 106 (1027)
Q Consensus 28 VRPl~~~E~~~~~~~~~~~~-~~~tii~~~~~~~~~rs~~~~sF~FD~VF~~~asQeeVYe~~v~plV~svL~G~NatIf 106 (1027)
+||+...|...+...+..+. +...|.... ..+|+||+||....+|.++|+.++.|+++.++.|||+|++
T Consensus 1 vRpl~~~e~~~g~~~c~~~~~~~pqv~ig~----------~~s~t~d~v~~~~~~Q~~~~e~~V~~l~~~lf~gynatvl 70 (913)
T KOG0244|consen 1 VRPLKQMEEEQGCRRCTEVSPRTPQVAIGK----------DASFTYDKVFLDLESQKEVYESCVRPLREKLFAGYNATVL 70 (913)
T ss_pred CCCccchHHHhcchhhcccCCCCCceeecC----------CcceeeeeeccCchHHHHHHHHHHHHHHHHHhhhhcceee
Confidence 69999999988877666533 333333322 4589999999999999999999999999999999999999
Q ss_pred EecccCCCCccccc----------CChhhHHHHHHHHHHhccccceeEeeeeeEeeccccccccCCCC--CCceeecCCC
Q 001693 107 AYGQTSSGKTYTMI----------GITEYTMSDIYDYIEKHKEREFVLKFSAMEIYNESVRDLLSADT--SPLRLLDDPE 174 (1027)
Q Consensus 107 AYGQTGSGKTyTM~----------GIi~rav~dLF~~Ie~~~e~~f~V~vS~lEIYnE~V~DLL~~~~--~~L~i~ed~~ 174 (1027)
|||||||||||||- |++|+++..+|..+.......|.|.|||+|||+|.|+|||.+.. .++.+++ +.
T Consensus 71 aygQtgsgkTytmgt~~~~~~~~~Gvipr~v~~~f~~i~~~~~~~f~i~vs~vely~e~v~dl~~~~~~~~~i~~~e-~~ 149 (913)
T KOG0244|consen 71 AYGQTGSGKTYTMGTNDAPAQDTVGVIPRAVSTLFTRIGKTESFVFRITVSFVELYNEEVLDLLKPSRLKANIKLRE-PK 149 (913)
T ss_pred eecccCCCceeecccccccccccCCcCcchHHHHHHHHHhhhccceeeeeeeeeccchhhhhhcChhhhhhceeccc-cC
Confidence 99999999999994 99999999999999988878899999999999999999999554 3577777 77
Q ss_pred CCeEecCCeeEEecCHHHHHHHHHHhhhhhccccccCCCcCCCceeEEEEEEEeecccccCCCCcceeeeEEEEecCCCc
Q 001693 175 RGTIVEKLTEETLKDWNHLKELLSTCEAQRQIGETSLNETSSRSHQILRLTVESSACEFIGNDPSSLTATVNFVDLAGSE 254 (1027)
Q Consensus 175 ~g~~V~gLtev~V~S~ee~~~LL~~g~~~R~~~sT~~N~~SSRSH~IftI~Ve~~~~e~~g~~~s~~~SkL~fVDLAGSE 254 (1027)
+++.+.|+++.+|.+..++...|..|...|++++|.||..|||||+||++++++... .......+++|+||||||||
T Consensus 150 g~it~~glte~tv~~~~q~~~~L~~g~~~RtvasTnMN~qssRshAifti~lkq~kk---~~~~s~~~sKlhlVDLAGSE 226 (913)
T KOG0244|consen 150 GEITIRGLTEKTVRMKLQLLSRLEKGSLERTVASTNMNAQSSRSHAIFTITLKQRKK---LSKRSSFCSKLHLVDLAGSE 226 (913)
T ss_pred CceEEEeehHHHHHHHHHHHHHHHhchHHHHHHHHhcchhhhhhhHHHHHHHHHHHH---hhccchhhhhhheeeccccc
Confidence 889999999999999999999999999999999999999999999999999987432 23333678999999999999
Q ss_pred cccccccchhhhhhhhhhhhhHHHHHHHHHHhcCC-CCCccccCCchhhhhhhhccCCCccceeeeecCCCCcchHHHHH
Q 001693 255 RASQALSAGTRLKEGCHINRSLLTLGTVIRKLSKG-RNGHVPFRDSKLTRILQSSLGGNARTAIICTLSPARSHVEQSRN 333 (1027)
Q Consensus 255 R~skt~s~g~rlkEg~~INkSL~aLg~VI~aLs~~-k~~hIPYRDSKLTrLLqdSLGGNskT~mIatISPs~~~~eETls 333 (1027)
|.+++++.|.|++||.+||.+|++||+||.||... +.+|||||||||||||||+||||+.|+||+||||+..+++||++
T Consensus 227 R~kkT~a~gdrlKEgInIN~gLL~LgnVIsaLg~~kk~~~vpyRdSkltrlLQdslgGns~tlmiaCiSpadsn~~Etln 306 (913)
T KOG0244|consen 227 RVKKTKAEGDRLKEGININGGLLALGNVISALGEAKKGGEVPYRDSKLTRLLQDSLGGNSDTLMIACISPADSNAQETLN 306 (913)
T ss_pred cccccccchhhhhhccCcchHHHHHHHHHHHHHhhhcCCcccchHHHHHHHHHHHhcCCcceeeeeecChhhhhhhhHHH
Confidence 99999999999999999999999999999999765 45799999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcccccceeccccCHHHHHHHHHHHHHHHHHHHhcCC
Q 001693 334 TLLFASCAKEVTTNAQVNIVMSDKALVKHLQRELSRLENELRGSG 378 (1027)
Q Consensus 334 TLrFAsRAK~Ikn~~~vN~~~s~kalik~Lq~Ei~~Le~eL~~~~ 378 (1027)
||+||.||++|+|+|++|.. ...+.+..|+.+++.|+.+|-...
T Consensus 307 Tl~ya~Rak~iknk~vvN~d-~~~~~~~~lK~ql~~l~~ell~~~ 350 (913)
T KOG0244|consen 307 TLRYADRAKQIKNKPVVNQD-PKSFEMLKLKAQLEPLQVELLSKA 350 (913)
T ss_pred HHHHhhHHHHhccccccccc-HHHHHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999983 345678999999999999987764
No 28
>KOG0247 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.5e-60 Score=551.33 Aligned_cols=331 Identities=30% Similarity=0.468 Sum_probs=290.3
Q ss_pred CCCCCCeEEEEEeCCCChhhhhcCCCcceEeeCCCEEEecCCccc-c----cCCcCCceeecceeeCCCCChhhHHHhhH
Q 001693 16 SGCPERIFVSVRLRPLNEKEIARNDVSDWECINDSTIIYRNNLSV-A----ERSMYPTSYTFDRVFSCDCTTRKVYEEGA 90 (1027)
Q Consensus 16 ~~~~e~I~V~VRVRPl~~~E~~~~~~~~~~~~~~~tii~~~~~~~-~----~rs~~~~sF~FD~VF~~~asQeeVYe~~v 90 (1027)
-..-+.|.|+||+||+.. ..++.+++.+.|..+|++..+... . ..+...+.|.|-+||+|+++|.+||+.++
T Consensus 27 ~~~~d~v~v~~rvrP~~~---~~~~~g~l~v~n~~tivL~~P~d~~~~~~~n~~q~e~~fsFt~VF~p~~tQ~dvF~~~~ 103 (809)
T KOG0247|consen 27 CESKDPVLVVCRVRPLSD---ASEDEGCLRVINEETIVLETPEDSFARRSVNGGQMEKKFSFTKVFGPSVTQADVFDTTV 103 (809)
T ss_pred hhhhcchheeEeecCCCC---CccccceEEEeccceeEeeCcHHHHhhhccCccceeeEeeeeeecCCCccHHHHHHHHh
Confidence 344568999999999986 335677888999999988743211 1 22234578999999999999999999999
Q ss_pred HHHHHHHhcCCCeeEEEecccCCCCccccc------CChhhHHHHHHHHHHhc---------------------------
Q 001693 91 KEVALAVVSGINSSVFAYGQTSSGKTYTMI------GITEYTMSDIYDYIEKH--------------------------- 137 (1027)
Q Consensus 91 ~plV~svL~G~NatIfAYGQTGSGKTyTM~------GIi~rav~dLF~~Ie~~--------------------------- 137 (1027)
.|+|.+++.|.|..+|+||.|||||||||+ ||+||+++-||..|...
T Consensus 104 ~plV~dlLkgqn~LlFTyGVTgSGKTYTm~G~~~~~GIlPR~Ld~iF~siq~~~~~k~~~kp~~s~~~e~~~~~~alL~l 183 (809)
T KOG0247|consen 104 APLVKDLLKGQNSLLFTYGVTGSGKTYTMTGTPDRPGILPRALDVIFNSIQGRQAKKPVFKPLRSNLFEIKAEEDALLQL 183 (809)
T ss_pred HHHHHHHHcccceeEEEeeccCCCceEEeecCCCCCCchHHHHHHHHHHhhceeccCceeccccchHHHHHHHHHHHHhh
Confidence 999999999999999999999999999998 79999999999755320
Q ss_pred --------------------------------------cccceeEeeeeeEeeccccccccCCCCC-----C-ceeecCC
Q 001693 138 --------------------------------------KEREFVLKFSAMEIYNESVRDLLSADTS-----P-LRLLDDP 173 (1027)
Q Consensus 138 --------------------------------------~e~~f~V~vS~lEIYnE~V~DLL~~~~~-----~-L~i~ed~ 173 (1027)
.+..|.|.|||+|||||-|||||.+.+. . ..+++|.
T Consensus 184 kr~~~~nd~~~ts~~~~~~~~e~~e~~~~~e~~~~~l~~d~~ysV~VSf~EIYN~~iYDLLe~~s~q~~~~~~~ll~~d~ 263 (809)
T KOG0247|consen 184 KREAMLNDRKSTSKAHRQSTPEYAEHIHVIEQPALELDEDIVYSVFVSFVEIYNNYIYDLLEDASFQGKLQKLKLLREDT 263 (809)
T ss_pred hhhhccccccCcchhhccccHHHHhhcchhcccccccCcCcEEEEEeeHHHHHHHHHHHhhccccccchhhhhhhhhhcc
Confidence 1124789999999999999999986532 2 5678899
Q ss_pred CCCeEecCCeeEEecCHHHHHHHHHHhhhhhccccccCCCcCCCceeEEEEEEEeecccccCCCCcceeeeEEEEecCCC
Q 001693 174 ERGTIVEKLTEETLKDWNHLKELLSTCEAQRQIGETSLNETSSRSHQILRLTVESSACEFIGNDPSSLTATVNFVDLAGS 253 (1027)
Q Consensus 174 ~~g~~V~gLtev~V~S~ee~~~LL~~g~~~R~~~sT~~N~~SSRSH~IftI~Ve~~~~e~~g~~~s~~~SkL~fVDLAGS 253 (1027)
++..||.|++++.|.+.+|+++||..|.++|.+++|.+|..|||||+||+|.+-+..++. +......|.|.|||||||
T Consensus 264 ~~~~~Vkgl~~V~VssseEA~~l~~lGqk~r~~asT~lN~~SSRSHsVFtIkl~q~~~~~--~s~~i~vSqlsLvDLAGS 341 (809)
T KOG0247|consen 264 NGNMYVKGLTEVEVSSSEEALELFQLGQKRRRVASTKLNANSSRSHSVFTIKLVQAPRSQ--DSNQITVSQLSLVDLAGS 341 (809)
T ss_pred CCCeeeccccEEEeccHHHHHHHHHHHHhhhhhhheeccccccccceeEEEEeeeccccc--ccCceeEEeeeeeecccc
Confidence 999999999999999999999999999999999999999999999999999998876541 234478899999999999
Q ss_pred ccccccccchhhhhhhhhhhhhHHHHHHHHHHhcCC----CCCccccCCchhhhhhhhccCCCccceeeeecCCCCcchH
Q 001693 254 ERASQALSAGTRLKEGCHINRSLLTLGTVIRKLSKG----RNGHVPFRDSKLTRILQSSLGGNARTAIICTLSPARSHVE 329 (1027)
Q Consensus 254 ER~skt~s~g~rlkEg~~INkSL~aLg~VI~aLs~~----k~~hIPYRDSKLTrLLqdSLGGNskT~mIatISPs~~~~e 329 (1027)
||..++.+.|.|++|+++||+||++||+||.+|..+ ...+|||||||||++++.+|.|..+.+||+||+|...+|+
T Consensus 342 ERt~rtq~sG~RLrEagNINtSLmTLg~Cie~LR~nqk~ks~~~VPyRdSKLThlfq~~f~G~gki~MIV~vnp~~e~Yd 421 (809)
T KOG0247|consen 342 ERTNRTQNSGERLREAGNINTSLMTLRRCIDVLRENQKSKSQKIVPYRDSKLTHLFKNYFDGKGKIRMIVCVNPKAEDYD 421 (809)
T ss_pred hhcccccchhHHHHhhccccHHHHHHHHHHHHHHHHhhhhccccCcchHHHHHHHHHHhcCCCCcEEEEEecCCchhhHH
Confidence 999999999999999999999999999999999743 3468999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcccccceec
Q 001693 330 QSRNTLLFASCAKEVTTNAQVN 351 (1027)
Q Consensus 330 ETlsTLrFAsRAK~Ikn~~~vN 351 (1027)
|+++.|+||.-|+.|.....++
T Consensus 422 Enl~vlkFaeiaq~v~v~~~~~ 443 (809)
T KOG0247|consen 422 ENLNVLKFAEIAQEVEVARPVI 443 (809)
T ss_pred HHHHHHHHHHhcccccccCccc
Confidence 9999999999999988776664
No 29
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=5.1e-58 Score=542.64 Aligned_cols=318 Identities=41% Similarity=0.611 Sum_probs=280.7
Q ss_pred CCCCCeEEEEEeCCCChhhhhcCCCcceEeeCCCEEEecCCcccccCCcCCceeecceeeCCCCChhhHHHhhHHHHHHH
Q 001693 17 GCPERIFVSVRLRPLNEKEIARNDVSDWECINDSTIIYRNNLSVAERSMYPTSYTFDRVFSCDCTTRKVYEEGAKEVALA 96 (1027)
Q Consensus 17 ~~~e~I~V~VRVRPl~~~E~~~~~~~~~~~~~~~tii~~~~~~~~~rs~~~~sF~FD~VF~~~asQeeVYe~~v~plV~s 96 (1027)
..-+.++++++..|-...+ ..+...+...+.+.. .....|.||+||++.++|++||+..++|++++
T Consensus 19 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~--------~~~~~~~fdkvf~~~~~q~~v~e~~~~~l~~~ 84 (568)
T COG5059 19 KSVSDIKSTIRIIPGELGE------RLINTSKKSHVSLEK--------SKEGTYAFDKVFGPSATQEDVYEETIKPLIDS 84 (568)
T ss_pred eeecCceEEEeecCCCcch------heeeccccccccccc--------ccceEEEEeeccCCCCcHHHHHHHhhhhHHHH
Confidence 3445688888888854322 112222222221111 11457999999999999999999999999999
Q ss_pred HhcCCCeeEEEecccCCCCccccc------CChhhHHHHHHHHHHhcc-ccceeEeeeeeEeeccccccccCCCCCCcee
Q 001693 97 VVSGINSSVFAYGQTSSGKTYTMI------GITEYTMSDIYDYIEKHK-EREFVLKFSAMEIYNESVRDLLSADTSPLRL 169 (1027)
Q Consensus 97 vL~G~NatIfAYGQTGSGKTyTM~------GIi~rav~dLF~~Ie~~~-e~~f~V~vS~lEIYnE~V~DLL~~~~~~L~i 169 (1027)
++.|||+||||||||||||||||. ||+|+++.+||+.++... +..|.|.+||+|||||+++|||.+....+.+
T Consensus 85 ~l~g~N~TvfayGqTgsgKtyt~~G~~~~~Gii~~~l~~lf~~l~~~~~~~~~~v~is~lEiYnEk~~DLl~~~~~~~~~ 164 (568)
T COG5059 85 LLLGYNCTVFAYGQTGSGKTYTMSGTEEEPGIIPLSLKELFSKLEDLSMTKDFAVSISYLEIYNEKIYDLLSPNEESLNI 164 (568)
T ss_pred HHhcccceEEEEcccCCCceeEeecCccccchHHHHHHHHHHHHHhcccCcceeeEeehhHHHhhHHHhhccCccccccc
Confidence 999999999999999999999996 799999999999998755 5679999999999999999999988877889
Q ss_pred ecCCCCCeEecCCeeEEecCHHHHHHHHHHhhhhhccccccCCCcCCCceeEEEEEEEeecccccCCCCcceeeeEEEEe
Q 001693 170 LDDPERGTIVEKLTEETLKDWNHLKELLSTCEAQRQIGETSLNETSSRSHQILRLTVESSACEFIGNDPSSLTATVNFVD 249 (1027)
Q Consensus 170 ~ed~~~g~~V~gLtev~V~S~ee~~~LL~~g~~~R~~~sT~~N~~SSRSH~IftI~Ve~~~~e~~g~~~s~~~SkL~fVD 249 (1027)
+++...+++|.|+++..+.++++++.+|..|..+|+++.|.+|..|||||+||++++.+..... .....++|+|||
T Consensus 165 ~~~~~~~v~v~~l~~~~~~s~ee~l~~l~~~~~nr~~~~te~n~~ssRshsi~~i~~~~~~~~~----~~~~~~~l~lvD 240 (568)
T COG5059 165 REDSLLGVKVAGLTEKHVSSKEEILDLLRKGEKNRTTASTEINDESSRSHSIFQIELASKNKVS----GTSETSKLSLVD 240 (568)
T ss_pred cccCCCceEeecceEEecCChHHHHHHHHHhhhhcccccchhccccccceEEEEEEEEEeccCc----cceecceEEEEe
Confidence 9999999999999999999999999999999999999999999999999999999999876532 112337999999
Q ss_pred cCCCccccccccchhhhhhhhhhhhhHHHHHHHHHHhcC-CCCCccccCCchhhhhhhhccCCCccceeeeecCCCCcch
Q 001693 250 LAGSERASQALSAGTRLKEGCHINRSLLTLGTVIRKLSK-GRNGHVPFRDSKLTRILQSSLGGNARTAIICTLSPARSHV 328 (1027)
Q Consensus 250 LAGSER~skt~s~g~rlkEg~~INkSL~aLg~VI~aLs~-~k~~hIPYRDSKLTrLLqdSLGGNskT~mIatISPs~~~~ 328 (1027)
|||||++..++..+.+++|+..||+||++||+||.+|.. .+..|||||+|||||+||++|||+++|.|||||+|...++
T Consensus 241 LagSE~~~~~~~~~~r~~E~~~iN~sLl~Lg~vI~~L~~~~~~~~ipyReskLTRlLq~sLgG~~~~~~i~~Isp~~~~~ 320 (568)
T COG5059 241 LAGSERAARTGNRGTRLKEGASINKSLLTLGNVINALGDKKKSGHIPYRESKLTRLLQDSLGGNCNTRVICTISPSSNSF 320 (568)
T ss_pred eccccccchhhcccchhhhhhhhHhhHHHHHHHHHHHhccccCCccchhhhHHHHHHHHhcCCCccEEEEEEEcCCCCch
Confidence 999999999999999999999999999999999999986 3567999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcccccceecc
Q 001693 329 EQSRNTLLFASCAKEVTTNAQVNI 352 (1027)
Q Consensus 329 eETlsTLrFAsRAK~Ikn~~~vN~ 352 (1027)
++|.+||+||.||+.|++.+.+|.
T Consensus 321 ~et~~tL~~a~rak~I~~~~~~~~ 344 (568)
T COG5059 321 EETINTLKFASRAKSIKNKIQVNS 344 (568)
T ss_pred HHHHHHHHHHHHHhhcCCcccccC
Confidence 999999999999999999999995
No 30
>cd01363 Motor_domain Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.
Probab=100.00 E-value=1.1e-45 Score=381.33 Aligned_cols=173 Identities=43% Similarity=0.678 Sum_probs=160.4
Q ss_pred HHHhhHHHHHHHHhcCCCeeEEEecccCCCCccccc------CChhhHHHHHHHHHHhccccceeEeeeeeEeecccccc
Q 001693 85 VYEEGAKEVALAVVSGINSSVFAYGQTSSGKTYTMI------GITEYTMSDIYDYIEKHKEREFVLKFSAMEIYNESVRD 158 (1027)
Q Consensus 85 VYe~~v~plV~svL~G~NatIfAYGQTGSGKTyTM~------GIi~rav~dLF~~Ie~~~e~~f~V~vS~lEIYnE~V~D 158 (1027)
||+.++ |+|+.+++|||+||||||||||||||||+ |++|+++++
T Consensus 8 vf~~~~-~~v~~~~~G~n~~i~~yG~tGsGKT~Tm~G~~~~~Giip~~~~~----------------------------- 57 (186)
T cd01363 8 VFRDVG-PLLQSALDGYNVCIFAYGQTGSGKTYTMEGKREGAGIIPRTVTD----------------------------- 57 (186)
T ss_pred HHHHHH-HHHHHHhCCcceeEEEECCCCCcceEecCCCCCCCCcchHHHHH-----------------------------
Confidence 999999 99999999999999999999999999999 788888876
Q ss_pred ccCCCCCCceeecCCCCCeEecCCeeEEecCHHHHHHHHHHhhhhhccccccCCCcCCCceeEEEEEEEeecccccCCCC
Q 001693 159 LLSADTSPLRLLDDPERGTIVEKLTEETLKDWNHLKELLSTCEAQRQIGETSLNETSSRSHQILRLTVESSACEFIGNDP 238 (1027)
Q Consensus 159 LL~~~~~~L~i~ed~~~g~~V~gLtev~V~S~ee~~~LL~~g~~~R~~~sT~~N~~SSRSH~IftI~Ve~~~~e~~g~~~ 238 (1027)
+++++..|.++|+++.|.+|..|||||+||+|+|.+...... ...
T Consensus 58 ----------------------------------~~~ll~~g~~~R~~~~t~~N~~SSRsH~i~~i~v~~~~~~~~-~~~ 102 (186)
T cd01363 58 ----------------------------------VIDLMDKGNANRTTAATAMNEHSSRSHSVFRIHFGGKNALAS-ATE 102 (186)
T ss_pred ----------------------------------HHHHHhhccccccccccCCCCccCcccEEEEEEEEEeecCCC-Ccc
Confidence 789999999999999999999999999999999988764322 223
Q ss_pred cceeeeEEEEecCCCccccccccchhhhhhhhhhhhhHHHHHHHHHHhcCCCCCccccCCchhhhhhhhccCCCccceee
Q 001693 239 SSLTATVNFVDLAGSERASQALSAGTRLKEGCHINRSLLTLGTVIRKLSKGRNGHVPFRDSKLTRILQSSLGGNARTAII 318 (1027)
Q Consensus 239 s~~~SkL~fVDLAGSER~skt~s~g~rlkEg~~INkSL~aLg~VI~aLs~~k~~hIPYRDSKLTrLLqdSLGGNskT~mI 318 (1027)
....++|+||||||||+..+++..+.+++|+..||+||.+|++||.+|+.+ ..||||||||||+||||+|||||+|+||
T Consensus 103 ~~~~s~l~lVDLAGsE~~~~~~~~~~~~~e~~~in~sl~~L~~~i~~l~~~-~~~vpyr~SkLT~lL~~~L~g~~~t~~i 181 (186)
T cd01363 103 QPKVGKINLVDLAGSERIDFSGAEGSRLTETANINKSLSTLGNVISALAER-DSHVPYRESKLTRLLQDSLGGNSRTLMV 181 (186)
T ss_pred ceeeeeEEEEEccccccccccCCchhhHHHHHHHhhHHHHHHHHHHHHhcC-CCCCCCcccHHHHHHHHhcCCCCeEEEE
Confidence 367899999999999999999999999999999999999999999999975 4699999999999999999999999999
Q ss_pred eecCC
Q 001693 319 CTLSP 323 (1027)
Q Consensus 319 atISP 323 (1027)
+||||
T Consensus 182 ~~vsP 186 (186)
T cd01363 182 ACISP 186 (186)
T ss_pred EEeCc
Confidence 99998
No 31
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=97.68 E-value=4.9e-07 Score=109.11 Aligned_cols=206 Identities=26% Similarity=0.283 Sum_probs=129.7
Q ss_pred CceeecceeeCCCCChhhHHHhhHHHHHHHHhcCCCeeEEEecccCCCCccccc----CChhhHHHHHHHHHHhcc--cc
Q 001693 67 PTSYTFDRVFSCDCTTRKVYEEGAKEVALAVVSGINSSVFAYGQTSSGKTYTMI----GITEYTMSDIYDYIEKHK--ER 140 (1027)
Q Consensus 67 ~~sF~FD~VF~~~asQeeVYe~~v~plV~svL~G~NatIfAYGQTGSGKTyTM~----GIi~rav~dLF~~Ie~~~--e~ 140 (1027)
...|.||.+|.....+..++.. ....++..++| +++||++++|+++||. ++....+..+|..+.... ..
T Consensus 352 ~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 426 (568)
T COG5059 352 IEEIKFDLSEDRSEIEILVFRE-QSQLSQSSLSG----IFAYMQSLKKETETLKSRIDLIMKSIISGTFERKKLLKEEGW 426 (568)
T ss_pred HHHHHhhhhhhhhhhhhHHHHH-HHhhhhhhhhh----HHHHHhhhhhhhhcccchhhhhhhhhhhhhhhhhhhhhhhHH
Confidence 3478999999999988888876 56677777777 9999999999999996 555556567777665433 22
Q ss_pred ceeEeeeeeEeeccccccccCCCC-CCce-eec-CCCCCeEecCCeeEEecCHHHHHHHHHHhhhhhccccccCCCcCCC
Q 001693 141 EFVLKFSAMEIYNESVRDLLSADT-SPLR-LLD-DPERGTIVEKLTEETLKDWNHLKELLSTCEAQRQIGETSLNETSSR 217 (1027)
Q Consensus 141 ~f~V~vS~lEIYnE~V~DLL~~~~-~~L~-i~e-d~~~g~~V~gLtev~V~S~ee~~~LL~~g~~~R~~~sT~~N~~SSR 217 (1027)
.+...+-++++|-....++..... .+.. ... ..-+...+..++... ....+.... ..+...+..+.+.+|..+++
T Consensus 427 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~n~~~~~ 504 (568)
T COG5059 427 KYKSTLQFLRIEIDRLLLLREEELSKKKTKIHKLNKLRHDLSSLLSSIP-EETSDRVES-EKASKLRSSASTKLNLRSSR 504 (568)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhhhhcc-hhhhhhhhh-hhhccchhhcccchhhhhcc
Confidence 333344445555222222221111 1000 000 000000001111100 001111111 14567788899999999999
Q ss_pred ceeEEEEEEEeecccccCCCCcceeeeEEEEecCCCccccccccchhhhhhhhhhhhhHHHHHHHHHHhc
Q 001693 218 SHQILRLTVESSACEFIGNDPSSLTATVNFVDLAGSERASQALSAGTRLKEGCHINRSLLTLGTVIRKLS 287 (1027)
Q Consensus 218 SH~IftI~Ve~~~~e~~g~~~s~~~SkL~fVDLAGSER~skt~s~g~rlkEg~~INkSL~aLg~VI~aLs 287 (1027)
+|.+|+........- .. ... ++.|||||+||. .....|.++++...+|++|..++.+|.++.
T Consensus 505 ~~~~~~~~~~~~~~~----~~-~~~--~n~~~~~~~e~~-~s~~~~~~l~~~~~~~k~l~~~~d~~~~~~ 566 (568)
T COG5059 505 SHSKFRDHLNGSNSS----TK-ELS--LNQVDLAGSERK-VSQSVGELLRETQSLNKSLSSLGDVIHALG 566 (568)
T ss_pred cchhhhhcccchhhh----hH-HHH--hhhhhccccccc-hhhhhHHHHHhhHhhhhccccchhhhhhcc
Confidence 999998776432210 00 111 799999999999 888999999999999999999999998764
No 32
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=94.08 E-value=0.089 Score=62.93 Aligned_cols=84 Identities=18% Similarity=0.296 Sum_probs=58.9
Q ss_pred eeecceeeCCCCChhhHHHhhHHHHHHHHhcCCCeeEEEecccCCCCcccccCChhh-------------HHHHHHHHHH
Q 001693 69 SYTFDRVFSCDCTTRKVYEEGAKEVALAVVSGINSSVFAYGQTSSGKTYTMIGITEY-------------TMSDIYDYIE 135 (1027)
Q Consensus 69 sF~FD~VF~~~asQeeVYe~~v~plV~svL~G~NatIfAYGQTGSGKTyTM~GIi~r-------------av~dLF~~Ie 135 (1027)
.|..-.-|.|.-+|-+ ....+++.+-.|.-.-+ -.|.|||||||||--+|.. ....||....
T Consensus 4 ~F~l~s~f~PaGDQP~----AI~~Lv~gi~~g~~~Qt-LLGvTGSGKTfT~AnVI~~~~rPtLV~AhNKTLAaQLy~Efk 78 (663)
T COG0556 4 PFKLHSPFKPAGDQPE----AIAELVEGIENGLKHQT-LLGVTGSGKTFTMANVIAKVQRPTLVLAHNKTLAAQLYSEFK 78 (663)
T ss_pred ceEeccCCCCCCCcHH----HHHHHHHHHhcCceeeE-EeeeccCCchhHHHHHHHHhCCCeEEEecchhHHHHHHHHHH
Confidence 4666677888887754 45557777666655443 4699999999999765543 3567887776
Q ss_pred h-ccccceeEeeeeeEeeccccc
Q 001693 136 K-HKEREFVLKFSAMEIYNESVR 157 (1027)
Q Consensus 136 ~-~~e~~f~V~vS~lEIYnE~V~ 157 (1027)
. .++..+...|||+..|.-..|
T Consensus 79 ~fFP~NaVEYFVSYYDYYQPEAY 101 (663)
T COG0556 79 EFFPENAVEYFVSYYDYYQPEAY 101 (663)
T ss_pred HhCcCcceEEEeeeccccCcccc
Confidence 5 345667778999999875443
No 33
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=92.34 E-value=0.058 Score=58.06 Aligned_cols=51 Identities=29% Similarity=0.408 Sum_probs=31.4
Q ss_pred ceeecceeeCCCCChhhHHHhhHHHHHHHHhcCCCeeEEEecccCCCCcccccC
Q 001693 68 TSYTFDRVFSCDCTTRKVYEEGAKEVALAVVSGINSSVFAYGQTSSGKTYTMIG 121 (1027)
Q Consensus 68 ~sF~FD~VF~~~asQeeVYe~~v~plV~svL~G~NatIfAYGQTGSGKTyTM~G 121 (1027)
..|+||.-+.. ..++..|.. +..+...--..+| .+|-||++|+||||-|.+
T Consensus 3 ~~~tFdnfv~g-~~N~~a~~~-~~~ia~~~~~~~~-~l~l~G~~G~GKTHLL~A 53 (219)
T PF00308_consen 3 PKYTFDNFVVG-ESNELAYAA-AKAIAENPGERYN-PLFLYGPSGLGKTHLLQA 53 (219)
T ss_dssp TT-SCCCS--T-TTTHHHHHH-HHHHHHSTTTSSS-EEEEEESTTSSHHHHHHH
T ss_pred CCCccccCCcC-CcHHHHHHH-HHHHHhcCCCCCC-ceEEECCCCCCHHHHHHH
Confidence 36999987663 446666653 4555544212244 478899999999997644
No 34
>PRK06893 DNA replication initiation factor; Validated
Probab=91.32 E-value=0.15 Score=55.21 Aligned_cols=51 Identities=14% Similarity=0.175 Sum_probs=35.2
Q ss_pred CceeecceeeCCCCChhhHHHhhHHHHHHHHhcCCCeeEEEecccCCCCcccccCCh
Q 001693 67 PTSYTFDRVFSCDCTTRKVYEEGAKEVALAVVSGINSSVFAYGQTSSGKTYTMIGIT 123 (1027)
Q Consensus 67 ~~sF~FD~VF~~~asQeeVYe~~v~plV~svL~G~NatIfAYGQTGSGKTyTM~GIi 123 (1027)
+..++||..+.... .. .+..+...+-.++|..++-||++|+||||.+.++.
T Consensus 10 ~~~~~fd~f~~~~~-~~-----~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~ 60 (229)
T PRK06893 10 IDDETLDNFYADNN-LL-----LLDSLRKNFIDLQQPFFYIWGGKSSGKSHLLKAVS 60 (229)
T ss_pred CCcccccccccCCh-HH-----HHHHHHHHhhccCCCeEEEECCCCCCHHHHHHHHH
Confidence 45689999997553 21 22223334445788889999999999999886543
No 35
>PRK06620 hypothetical protein; Validated
Probab=88.76 E-value=0.22 Score=53.56 Aligned_cols=50 Identities=26% Similarity=0.385 Sum_probs=33.8
Q ss_pred CceeecceeeCCCCChhhHHHhhHHHHHHHHhcCCC---eeEEEecccCCCCccccc
Q 001693 67 PTSYTFDRVFSCDCTTRKVYEEGAKEVALAVVSGIN---SSVFAYGQTSSGKTYTMI 120 (1027)
Q Consensus 67 ~~sF~FD~VF~~~asQeeVYe~~v~plV~svL~G~N---atIfAYGQTGSGKTyTM~ 120 (1027)
...|+||..+...+ +...|.. +..+... -|+| -.++-||++|+||||.+.
T Consensus 10 ~~~~tfd~Fvvg~~-N~~a~~~-~~~~~~~--~~~~~~~~~l~l~Gp~G~GKThLl~ 62 (214)
T PRK06620 10 SSKYHPDEFIVSSS-NDQAYNI-IKNWQCG--FGVNPYKFTLLIKGPSSSGKTYLTK 62 (214)
T ss_pred CCCCCchhhEeccc-HHHHHHH-HHHHHHc--cccCCCcceEEEECCCCCCHHHHHH
Confidence 34689998877544 4556665 3334331 1444 358999999999999885
No 36
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=87.68 E-value=0.26 Score=60.71 Aligned_cols=53 Identities=32% Similarity=0.403 Sum_probs=36.8
Q ss_pred CceeecceeeCCCCChhhHHHhhHHHHHHHHhcCCCeeEEEecccCCCCcccccCC
Q 001693 67 PTSYTFDRVFSCDCTTRKVYEEGAKEVALAVVSGINSSVFAYGQTSSGKTYTMIGI 122 (1027)
Q Consensus 67 ~~sF~FD~VF~~~asQeeVYe~~v~plV~svL~G~NatIfAYGQTGSGKTyTM~GI 122 (1027)
...|+||..+.... +..+|. .+..++...-.+||. ||-||.+|+||||-+.+|
T Consensus 282 ~~~~TFDnFvvG~s-N~~A~a-aa~avae~~~~~~Np-L~LyG~sGsGKTHLL~AI 334 (617)
T PRK14086 282 NPKYTFDTFVIGAS-NRFAHA-AAVAVAEAPAKAYNP-LFIYGESGLGKTHLLHAI 334 (617)
T ss_pred CCCCCHhhhcCCCc-cHHHHH-HHHHHHhCccccCCc-EEEECCCCCCHHHHHHHH
Confidence 45699988765443 444554 355566554456775 899999999999998654
No 37
>PRK12377 putative replication protein; Provisional
Probab=87.66 E-value=0.38 Score=53.19 Aligned_cols=53 Identities=19% Similarity=0.248 Sum_probs=37.8
Q ss_pred eecceeeCCCCChhhHHHhhHHHHHHHHhcCCCeeEEEecccCCCCcccccCChh
Q 001693 70 YTFDRVFSCDCTTRKVYEEGAKEVALAVVSGINSSVFAYGQTSSGKTYTMIGITE 124 (1027)
Q Consensus 70 F~FD~VF~~~asQeeVYe~~v~plV~svL~G~NatIfAYGQTGSGKTyTM~GIi~ 124 (1027)
.+||.-......|..++.. +..++..+..+. ..++-||++|+||||.+.+|.-
T Consensus 71 ~tFdnf~~~~~~~~~a~~~-a~~~a~~~~~~~-~~l~l~G~~GtGKThLa~AIa~ 123 (248)
T PRK12377 71 CSFANYQVQNDGQRYALSQ-AKSIADELMTGC-TNFVFSGKPGTGKNHLAAAIGN 123 (248)
T ss_pred CCcCCcccCChhHHHHHHH-HHHHHHHHHhcC-CeEEEECCCCCCHHHHHHHHHH
Confidence 4777655545566667764 677777776654 4688899999999999865443
No 38
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=87.48 E-value=0.27 Score=55.68 Aligned_cols=32 Identities=22% Similarity=0.340 Sum_probs=29.0
Q ss_pred hHHHHHHHHhcCCCeeEEEecccCCCCccccc
Q 001693 89 GAKEVALAVVSGINSSVFAYGQTSSGKTYTMI 120 (1027)
Q Consensus 89 ~v~plV~svL~G~NatIfAYGQTGSGKTyTM~ 120 (1027)
...+++..+++--++.|+.-|+||||||.||-
T Consensus 112 glP~i~~~~~~~~~GLILVTGpTGSGKSTTlA 143 (353)
T COG2805 112 GLPPIVRELAESPRGLILVTGPTGSGKSTTLA 143 (353)
T ss_pred CCCHHHHHHHhCCCceEEEeCCCCCcHHHHHH
Confidence 46788889999999999999999999999974
No 39
>PRK08116 hypothetical protein; Validated
Probab=85.92 E-value=0.42 Score=53.19 Aligned_cols=51 Identities=24% Similarity=0.370 Sum_probs=36.2
Q ss_pred eeecceeeCCCCChhhHHHhhHHHHHHHHhc--CCCeeEEEecccCCCCcccccC
Q 001693 69 SYTFDRVFSCDCTTRKVYEEGAKEVALAVVS--GINSSVFAYGQTSSGKTYTMIG 121 (1027)
Q Consensus 69 sF~FD~VF~~~asQeeVYe~~v~plV~svL~--G~NatIfAYGQTGSGKTyTM~G 121 (1027)
.++||.-. .+..+...|.. +...++.+.. +.|..++-||.+|+||||.+..
T Consensus 81 ~~tFdnf~-~~~~~~~a~~~-a~~y~~~~~~~~~~~~gl~l~G~~GtGKThLa~a 133 (268)
T PRK08116 81 NSTFENFL-FDKGSEKAYKI-ARKYVKKFEEMKKENVGLLLWGSVGTGKTYLAAC 133 (268)
T ss_pred hcchhccc-CChHHHHHHHH-HHHHHHHHHhhccCCceEEEECCCCCCHHHHHHH
Confidence 46788644 35555556654 7777777654 3455699999999999998755
No 40
>PRK06526 transposase; Provisional
Probab=85.38 E-value=0.4 Score=53.03 Aligned_cols=44 Identities=20% Similarity=0.225 Sum_probs=28.3
Q ss_pred eCCCCChhhHHHhhHHHHHHHHhcCCCeeEEEecccCCCCcccccCChh
Q 001693 76 FSCDCTTRKVYEEGAKEVALAVVSGINSSVFAYGQTSSGKTYTMIGITE 124 (1027)
Q Consensus 76 F~~~asQeeVYe~~v~plV~svL~G~NatIfAYGQTGSGKTyTM~GIi~ 124 (1027)
+.+.-++..+..-...+.+. .+.| |+.||++|+||||.+.+|.-
T Consensus 77 ~~~~~~~~~~~~l~~~~fi~---~~~n--lll~Gp~GtGKThLa~al~~ 120 (254)
T PRK06526 77 HQRSLKRDTIAHLGTLDFVT---GKEN--VVFLGPPGTGKTHLAIGLGI 120 (254)
T ss_pred cCCCcchHHHHHHhcCchhh---cCce--EEEEeCCCCchHHHHHHHHH
Confidence 44455555555443334443 3454 78999999999999976543
No 41
>PRK09087 hypothetical protein; Validated
Probab=84.70 E-value=0.55 Score=50.98 Aligned_cols=48 Identities=19% Similarity=0.111 Sum_probs=32.5
Q ss_pred CceeecceeeCCCCChhhHHHhhHHHHHHHHhcCCCeeEEEecccCCCCccccc
Q 001693 67 PTSYTFDRVFSCDCTTRKVYEEGAKEVALAVVSGINSSVFAYGQTSSGKTYTMI 120 (1027)
Q Consensus 67 ~~sF~FD~VF~~~asQeeVYe~~v~plV~svL~G~NatIfAYGQTGSGKTyTM~ 120 (1027)
+..|+||.-+..+++ ..+|.. +.....-.+..++-||++||||||-+.
T Consensus 15 ~~~~~~~~Fi~~~~N-~~a~~~-----l~~~~~~~~~~l~l~G~~GsGKThLl~ 62 (226)
T PRK09087 15 DPAYGRDDLLVTESN-RAAVSL-----VDHWPNWPSPVVVLAGPVGSGKTHLAS 62 (226)
T ss_pred CCCCChhceeecCch-HHHHHH-----HHhcccCCCCeEEEECCCCCCHHHHHH
Confidence 346899988864444 446663 333222235568999999999999885
No 42
>PRK07952 DNA replication protein DnaC; Validated
Probab=84.64 E-value=0.63 Score=51.34 Aligned_cols=54 Identities=15% Similarity=0.140 Sum_probs=36.0
Q ss_pred eeecceeeCCCCChhhHHHhhHHHHHHHHhcCCCeeEEEecccCCCCcccccCChh
Q 001693 69 SYTFDRVFSCDCTTRKVYEEGAKEVALAVVSGINSSVFAYGQTSSGKTYTMIGITE 124 (1027)
Q Consensus 69 sF~FD~VF~~~asQeeVYe~~v~plV~svL~G~NatIfAYGQTGSGKTyTM~GIi~ 124 (1027)
..+||.-......|..++.. +...++.+..|. ..++-||.+|+||||.+.+|.-
T Consensus 68 ~~tFdnf~~~~~~q~~al~~-a~~~~~~~~~~~-~~~~l~G~~GtGKThLa~aia~ 121 (244)
T PRK07952 68 NCSFENYRVECEGQMNALSK-ARQYVEEFDGNI-ASFIFSGKPGTGKNHLAAAICN 121 (244)
T ss_pred CCccccccCCCchHHHHHHH-HHHHHHhhccCC-ceEEEECCCCCCHHHHHHHHHH
Confidence 45777654444456566665 555666654443 3688999999999999865443
No 43
>PRK06835 DNA replication protein DnaC; Validated
Probab=84.64 E-value=0.39 Score=55.12 Aligned_cols=41 Identities=24% Similarity=0.332 Sum_probs=29.1
Q ss_pred hHHHhhHHHHHHHHhcCCCeeEEEecccCCCCcccccCChhhH
Q 001693 84 KVYEEGAKEVALAVVSGINSSVFAYGQTSSGKTYTMIGITEYT 126 (1027)
Q Consensus 84 eVYe~~v~plV~svL~G~NatIfAYGQTGSGKTyTM~GIi~ra 126 (1027)
.+++. +...++.+-.+. -.|+-||++|+||||.+.+|...+
T Consensus 167 ~~~~~-~~~f~~~f~~~~-~~Lll~G~~GtGKThLa~aIa~~l 207 (329)
T PRK06835 167 KILEK-CKNFIENFDKNN-ENLLFYGNTGTGKTFLSNCIAKEL 207 (329)
T ss_pred HHHHH-HHHHHHHHhccC-CcEEEECCCCCcHHHHHHHHHHHH
Confidence 34443 566777776554 569999999999999886654433
No 44
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=84.41 E-value=0.56 Score=55.82 Aligned_cols=51 Identities=29% Similarity=0.371 Sum_probs=34.7
Q ss_pred CceeecceeeCCCCChhhHHHhhHHHHHHHHhcCCCeeEEEecccCCCCcccccC
Q 001693 67 PTSYTFDRVFSCDCTTRKVYEEGAKEVALAVVSGINSSVFAYGQTSSGKTYTMIG 121 (1027)
Q Consensus 67 ~~sF~FD~VF~~~asQeeVYe~~v~plV~svL~G~NatIfAYGQTGSGKTyTM~G 121 (1027)
...|+||.-+.. ..+...|.. +..++.. -..||. +|-||++|+||||.+..
T Consensus 99 ~~~~tFdnFv~g-~~n~~a~~~-~~~~~~~-~~~~n~-l~lyG~~G~GKTHLl~a 149 (440)
T PRK14088 99 NPDYTFENFVVG-PGNSFAYHA-ALEVAKN-PGRYNP-LFIYGGVGLGKTHLLQS 149 (440)
T ss_pred CCCCcccccccC-CchHHHHHH-HHHHHhC-cCCCCe-EEEEcCCCCcHHHHHHH
Confidence 457999987753 445556654 4444443 123675 99999999999998854
No 45
>PRK08084 DNA replication initiation factor; Provisional
Probab=83.98 E-value=0.68 Score=50.32 Aligned_cols=50 Identities=8% Similarity=0.246 Sum_probs=32.6
Q ss_pred CceeecceeeCCCCChhhHHHhhHHHHHHHHhcCCCeeEEEecccCCCCcccccCC
Q 001693 67 PTSYTFDRVFSCDCTTRKVYEEGAKEVALAVVSGINSSVFAYGQTSSGKTYTMIGI 122 (1027)
Q Consensus 67 ~~sF~FD~VF~~~asQeeVYe~~v~plV~svL~G~NatIfAYGQTGSGKTyTM~GI 122 (1027)
+..|+||.-+.. .+...+.. +..+.. ......++-||++|+||||.+.++
T Consensus 16 ~~~~~fd~f~~~--~n~~a~~~-l~~~~~---~~~~~~l~l~Gp~G~GKThLl~a~ 65 (235)
T PRK08084 16 PDDETFASFYPG--DNDSLLAA-LQNALR---QEHSGYIYLWSREGAGRSHLLHAA 65 (235)
T ss_pred CCcCCccccccC--ccHHHHHH-HHHHHh---CCCCCeEEEECCCCCCHHHHHHHH
Confidence 456889876654 55556654 333322 222347899999999999998653
No 46
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=83.94 E-value=0.6 Score=54.60 Aligned_cols=52 Identities=29% Similarity=0.336 Sum_probs=32.9
Q ss_pred CceeecceeeCCCCChhhHHHhhHHHHHHHHhcCCCeeEEEecccCCCCcccccC
Q 001693 67 PTSYTFDRVFSCDCTTRKVYEEGAKEVALAVVSGINSSVFAYGQTSSGKTYTMIG 121 (1027)
Q Consensus 67 ~~sF~FD~VF~~~asQeeVYe~~v~plV~svL~G~NatIfAYGQTGSGKTyTM~G 121 (1027)
+..|+||.-.. +..+...|.. +..++..--..+| .++-||++|+||||.+..
T Consensus 104 ~~~~tfd~fi~-g~~n~~a~~~-~~~~~~~~~~~~n-~l~l~G~~G~GKThL~~a 155 (405)
T TIGR00362 104 NPKYTFDNFVV-GKSNRLAHAA-ALAVAENPGKAYN-PLFIYGGVGLGKTHLLHA 155 (405)
T ss_pred CCCCccccccc-CCcHHHHHHH-HHHHHhCcCccCC-eEEEECCCCCcHHHHHHH
Confidence 45799998443 3445555543 4444443211234 478899999999998754
No 47
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=83.86 E-value=0.49 Score=47.41 Aligned_cols=31 Identities=19% Similarity=0.214 Sum_probs=21.2
Q ss_pred HHHHHHHhcC-CCeeEEEecccCCCCcccccC
Q 001693 91 KEVALAVVSG-INSSVFAYGQTSSGKTYTMIG 121 (1027)
Q Consensus 91 ~plV~svL~G-~NatIfAYGQTGSGKTyTM~G 121 (1027)
..++..+-.+ ....++..++||||||++|.+
T Consensus 13 ~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~ 44 (184)
T PF04851_consen 13 ARIINSLENKKEERRVLLNAPTGSGKTIIALA 44 (184)
T ss_dssp HHHHHHHHTTSGCSEEEEEESTTSSHHHHHHH
T ss_pred HHHHHHHHhcCCCCCEEEEECCCCCcChhhhh
Confidence 3344444444 355666778999999999985
No 48
>PRK05642 DNA replication initiation factor; Validated
Probab=83.61 E-value=0.81 Score=49.77 Aligned_cols=49 Identities=14% Similarity=0.265 Sum_probs=30.5
Q ss_pred CceeecceeeCCCCChhhHHHhhHHHHHHHHhc---CC-CeeEEEecccCCCCcccccCC
Q 001693 67 PTSYTFDRVFSCDCTTRKVYEEGAKEVALAVVS---GI-NSSVFAYGQTSSGKTYTMIGI 122 (1027)
Q Consensus 67 ~~sF~FD~VF~~~asQeeVYe~~v~plV~svL~---G~-NatIfAYGQTGSGKTyTM~GI 122 (1027)
+..|+||.-+.. . +.. +...+....+ +. ...++-||.+|+||||-+.++
T Consensus 13 ~~~~tfdnF~~~-~-~~~-----a~~~~~~~~~~~~~~~~~~l~l~G~~G~GKTHLl~a~ 65 (234)
T PRK05642 13 RDDATFANYYPG-A-NAA-----ALGYVERLCEADAGWTESLIYLWGKDGVGRSHLLQAA 65 (234)
T ss_pred CCcccccccCcC-C-hHH-----HHHHHHHHhhccccCCCCeEEEECCCCCCHHHHHHHH
Confidence 346899987743 2 222 3334443333 22 246889999999999987543
No 49
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=82.95 E-value=0.74 Score=55.35 Aligned_cols=35 Identities=23% Similarity=0.217 Sum_probs=28.8
Q ss_pred HhhHHHHHHHHhcCCCeeEEEecccCCCCcccccC
Q 001693 87 EEGAKEVALAVVSGINSSVFAYGQTSSGKTYTMIG 121 (1027)
Q Consensus 87 e~~v~plV~svL~G~NatIfAYGQTGSGKTyTM~G 121 (1027)
.......+..++..-++.|+.-|+||||||.||+.
T Consensus 243 ~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTTLY~ 277 (500)
T COG2804 243 SPFQLARLLRLLNRPQGLILVTGPTGSGKTTTLYA 277 (500)
T ss_pred CHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHH
Confidence 33455567788899999999999999999999864
No 50
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=82.75 E-value=0.7 Score=54.91 Aligned_cols=53 Identities=30% Similarity=0.355 Sum_probs=33.8
Q ss_pred CceeecceeeCCCCChhhHHHhhHHHHHHHHhcCCCeeEEEecccCCCCcccccCC
Q 001693 67 PTSYTFDRVFSCDCTTRKVYEEGAKEVALAVVSGINSSVFAYGQTSSGKTYTMIGI 122 (1027)
Q Consensus 67 ~~sF~FD~VF~~~asQeeVYe~~v~plV~svL~G~NatIfAYGQTGSGKTyTM~GI 122 (1027)
...|+||.-.. +..+...|.. +..+...--..+| .++-||++|+||||.+..+
T Consensus 116 ~~~~tfd~fv~-g~~n~~a~~~-~~~~~~~~~~~~~-~l~l~G~~G~GKThL~~ai 168 (450)
T PRK00149 116 NPKYTFDNFVV-GKSNRLAHAA-ALAVAENPGKAYN-PLFIYGGVGLGKTHLLHAI 168 (450)
T ss_pred CCCCccccccc-CCCcHHHHHH-HHHHHhCcCccCC-eEEEECCCCCCHHHHHHHH
Confidence 45789988443 2345555554 4445443212344 4888999999999998543
No 51
>PRK10884 SH3 domain-containing protein; Provisional
Probab=82.59 E-value=4.2 Score=44.03 Aligned_cols=73 Identities=19% Similarity=0.189 Sum_probs=44.4
Q ss_pred cCHHHHHHHHHHHHHHHHHHHhcCCCCCC--CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 001693 354 MSDKALVKHLQRELSRLENELRGSGPVFI--TPDSVSVLREKDLRIEKLEKEVDELTMQRDLARTEVENLLRGAG 426 (1027)
Q Consensus 354 ~s~kalik~Lq~Ei~~Le~eL~~~~~~~~--~~~~~~~l~ek~~~i~kle~ei~eL~~q~d~a~~~~~~l~~~~~ 426 (1027)
++....+..+++|++.|+++|........ ..+....+.+.+.+|.+|+++..+|+.++..++.+++.|..+..
T Consensus 89 p~~~~rlp~le~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~ 163 (206)
T PRK10884 89 PSLRTRVPDLENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLD 163 (206)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556788899999999988877543211 01112333444555666777777777777666666665554443
No 52
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=82.51 E-value=2.3 Score=49.73 Aligned_cols=58 Identities=24% Similarity=0.294 Sum_probs=33.4
Q ss_pred HHhhHHHHHHHHhcCCCeeEEEecccCCCCcccccCChhhHHHHHHHHHHhccccceeEeeeeeEe
Q 001693 86 YEEGAKEVALAVVSGINSSVFAYGQTSSGKTYTMIGITEYTMSDIYDYIEKHKEREFVLKFSAMEI 151 (1027)
Q Consensus 86 Ye~~v~plV~svL~G~NatIfAYGQTGSGKTyTM~GIi~rav~dLF~~Ie~~~e~~f~V~vS~lEI 151 (1027)
++.++.-+...+-.|....++.||.||+|||.|+ ..+++.++........++|-+.++
T Consensus 26 i~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~--------~~v~~~l~~~~~~~~~~yINc~~~ 83 (366)
T COG1474 26 INQLASFLAPALRGERPSNIIIYGPTGTGKTATV--------KFVMEELEESSANVEVVYINCLEL 83 (366)
T ss_pred HHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHH--------HHHHHHHHhhhccCceEEEeeeeC
Confidence 3333333333333444444999999999999875 556666655433332455544444
No 53
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=82.40 E-value=0.74 Score=55.00 Aligned_cols=50 Identities=20% Similarity=0.337 Sum_probs=32.7
Q ss_pred eeecceeeCCCCChhhHHHhhHHHHHHHHhcCCCeeEEEecccCCCCcccccC
Q 001693 69 SYTFDRVFSCDCTTRKVYEEGAKEVALAVVSGINSSVFAYGQTSSGKTYTMIG 121 (1027)
Q Consensus 69 sF~FD~VF~~~asQeeVYe~~v~plV~svL~G~NatIfAYGQTGSGKTyTM~G 121 (1027)
.|+||.-+... +++..|. .+..++..-=..|| .+|-||.+|+||||.|..
T Consensus 111 ~~tFdnFv~g~-~n~~A~~-aa~~~a~~~~~~~n-pl~i~G~~G~GKTHLl~A 160 (450)
T PRK14087 111 ENTFENFVIGS-SNEQAFI-AVQTVSKNPGISYN-PLFIYGESGMGKTHLLKA 160 (450)
T ss_pred ccchhcccCCC-cHHHHHH-HHHHHHhCcCcccC-ceEEECCCCCcHHHHHHH
Confidence 58999866544 4555664 35555432111244 488999999999999854
No 54
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=80.81 E-value=1.2 Score=46.96 Aligned_cols=49 Identities=18% Similarity=0.392 Sum_probs=32.6
Q ss_pred CceeecceeeCCCCChhhHHHhhHHHHHHHHhcCCCeeEEEecccCCCCcccccC
Q 001693 67 PTSYTFDRVFSCDCTTRKVYEEGAKEVALAVVSGINSSVFAYGQTSSGKTYTMIG 121 (1027)
Q Consensus 67 ~~sF~FD~VF~~~asQeeVYe~~v~plV~svL~G~NatIfAYGQTGSGKTyTM~G 121 (1027)
+..|+||.... + .+..+++.. +.++ ..+....|+-||++|+||||....
T Consensus 9 ~~~~~~~~~~~-~-~~~~~~~~l-~~~~---~~~~~~~lll~G~~G~GKT~la~~ 57 (226)
T TIGR03420 9 PDDPTFDNFYA-G-GNAELLAAL-RQLA---AGKGDRFLYLWGESGSGKSHLLQA 57 (226)
T ss_pred CCchhhcCcCc-C-CcHHHHHHH-HHHH---hcCCCCeEEEECCCCCCHHHHHHH
Confidence 34688887773 2 444555542 2222 246677899999999999998744
No 55
>PRK08727 hypothetical protein; Validated
Probab=79.91 E-value=1.1 Score=48.62 Aligned_cols=48 Identities=17% Similarity=0.364 Sum_probs=29.1
Q ss_pred CceeecceeeCCCCChhhHHHhhHHHHHHHHhcCC-CeeEEEecccCCCCcccccCC
Q 001693 67 PTSYTFDRVFSCDCTTRKVYEEGAKEVALAVVSGI-NSSVFAYGQTSSGKTYTMIGI 122 (1027)
Q Consensus 67 ~~sF~FD~VF~~~asQeeVYe~~v~plV~svL~G~-NatIfAYGQTGSGKTyTM~GI 122 (1027)
+..|+||.-+..++ + .... +..+ ..|. .-.|+-||++|+||||.+..+
T Consensus 13 ~~~~~f~~f~~~~~-n--~~~~-~~~~----~~~~~~~~l~l~G~~G~GKThL~~a~ 61 (233)
T PRK08727 13 PSDQRFDSYIAAPD-G--LLAQ-LQAL----AAGQSSDWLYLSGPAGTGKTHLALAL 61 (233)
T ss_pred CCcCChhhccCCcH-H--HHHH-HHHH----HhccCCCeEEEECCCCCCHHHHHHHH
Confidence 44689998664333 2 2221 1122 2233 235999999999999988653
No 56
>PRK08939 primosomal protein DnaI; Reviewed
Probab=79.16 E-value=1.1 Score=51.11 Aligned_cols=53 Identities=19% Similarity=0.238 Sum_probs=34.8
Q ss_pred eecceeeCCCCChhhHHHhhHHHHHHHHhcC-CCeeEEEecccCCCCcccccCCh
Q 001693 70 YTFDRVFSCDCTTRKVYEEGAKEVALAVVSG-INSSVFAYGQTSSGKTYTMIGIT 123 (1027)
Q Consensus 70 F~FD~VF~~~asQeeVYe~~v~plV~svL~G-~NatIfAYGQTGSGKTyTM~GIi 123 (1027)
.+||.+-.....+..++.. +...+.....| ..-.|+-||++|+||||-+.++.
T Consensus 124 atf~~~~~~~~~~~~~~~~-~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia 177 (306)
T PRK08939 124 ASLADIDLDDRDRLDALMA-ALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIA 177 (306)
T ss_pred CcHHHhcCCChHHHHHHHH-HHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHH
Confidence 4565544333356666664 46666665543 23469999999999999986543
No 57
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=79.14 E-value=1.6 Score=50.33 Aligned_cols=21 Identities=33% Similarity=0.502 Sum_probs=17.2
Q ss_pred cCCCeeEEEecccCCCCcccc
Q 001693 99 SGINSSVFAYGQTSSGKTYTM 119 (1027)
Q Consensus 99 ~G~NatIfAYGQTGSGKTyTM 119 (1027)
.+....++-||++|+|||+++
T Consensus 52 ~~~~~~~lI~G~~GtGKT~l~ 72 (394)
T PRK00411 52 GSRPLNVLIYGPPGTGKTTTV 72 (394)
T ss_pred CCCCCeEEEECCCCCCHHHHH
Confidence 345567899999999999975
No 58
>PRK08181 transposase; Validated
Probab=79.09 E-value=1.4 Score=49.27 Aligned_cols=25 Identities=24% Similarity=0.393 Sum_probs=19.6
Q ss_pred cCCCeeEEEecccCCCCcccccCChhh
Q 001693 99 SGINSSVFAYGQTSSGKTYTMIGITEY 125 (1027)
Q Consensus 99 ~G~NatIfAYGQTGSGKTyTM~GIi~r 125 (1027)
.|.| |+-||++|+||||-+.++.-.
T Consensus 105 ~~~n--lll~Gp~GtGKTHLa~Aia~~ 129 (269)
T PRK08181 105 KGAN--LLLFGPPGGGKSHLAAAIGLA 129 (269)
T ss_pred cCce--EEEEecCCCcHHHHHHHHHHH
Confidence 4555 889999999999998765433
No 59
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=78.16 E-value=1.7 Score=49.45 Aligned_cols=21 Identities=43% Similarity=0.635 Sum_probs=17.6
Q ss_pred cCCCeeEEEecccCCCCcccc
Q 001693 99 SGINSSVFAYGQTSSGKTYTM 119 (1027)
Q Consensus 99 ~G~NatIfAYGQTGSGKTyTM 119 (1027)
.+....++-||++|+|||+++
T Consensus 37 ~~~~~~i~I~G~~GtGKT~l~ 57 (365)
T TIGR02928 37 GSRPSNVFIYGKTGTGKTAVT 57 (365)
T ss_pred CCCCCcEEEECCCCCCHHHHH
Confidence 355668999999999999875
No 60
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=77.89 E-value=1.9 Score=46.00 Aligned_cols=50 Identities=18% Similarity=0.336 Sum_probs=31.2
Q ss_pred CceeecceeeCCCCChhhHHHhhHHHHHHHHhcCCCeeEEEecccCCCCcccccC
Q 001693 67 PTSYTFDRVFSCDCTTRKVYEEGAKEVALAVVSGINSSVFAYGQTSSGKTYTMIG 121 (1027)
Q Consensus 67 ~~sF~FD~VF~~~asQeeVYe~~v~plV~svL~G~NatIfAYGQTGSGKTyTM~G 121 (1027)
+..|+||..+.. ..+ .++. .++.++.. .+.+..++-||.+|+||||.+..
T Consensus 12 ~~~~~~d~f~~~-~~~-~~~~-~l~~~~~~--~~~~~~~~l~G~~G~GKT~La~a 61 (227)
T PRK08903 12 PPPPTFDNFVAG-ENA-ELVA-RLRELAAG--PVADRFFYLWGEAGSGRSHLLQA 61 (227)
T ss_pred CChhhhcccccC-CcH-HHHH-HHHHHHhc--cCCCCeEEEECCCCCCHHHHHHH
Confidence 346899998842 222 3333 23333331 23455789999999999998744
No 61
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=77.80 E-value=1.7 Score=40.94 Aligned_cols=27 Identities=22% Similarity=0.270 Sum_probs=18.7
Q ss_pred HHHHHhcCCCeeEEEecccCCCCcccc
Q 001693 93 VALAVVSGINSSVFAYGQTSSGKTYTM 119 (1027)
Q Consensus 93 lV~svL~G~NatIfAYGQTGSGKTyTM 119 (1027)
+...+.......++.+|++|+|||+.+
T Consensus 10 i~~~~~~~~~~~v~i~G~~G~GKT~l~ 36 (151)
T cd00009 10 LREALELPPPKNLLLYGPPGTGKTTLA 36 (151)
T ss_pred HHHHHhCCCCCeEEEECCCCCCHHHHH
Confidence 333333334456888999999999865
No 62
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=75.85 E-value=0.95 Score=42.20 Aligned_cols=18 Identities=33% Similarity=0.287 Sum_probs=15.3
Q ss_pred EEEecccCCCCcccccCC
Q 001693 105 VFAYGQTSSGKTYTMIGI 122 (1027)
Q Consensus 105 IfAYGQTGSGKTyTM~GI 122 (1027)
++.+|+||+|||+++...
T Consensus 3 ~~i~~~~G~GKT~~~~~~ 20 (144)
T cd00046 3 VLLAAPTGSGKTLAALLP 20 (144)
T ss_pred EEEECCCCCchhHHHHHH
Confidence 577899999999998653
No 63
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=75.61 E-value=15 Score=38.23 Aligned_cols=65 Identities=18% Similarity=0.316 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 001693 358 ALVKHLQRELSRLENELRGSGPVFITPDSVSVLREKDLRIEKLEKEVDELTMQRDLARTEVENLLRGAG 426 (1027)
Q Consensus 358 alik~Lq~Ei~~Le~eL~~~~~~~~~~~~~~~l~ek~~~i~kle~ei~eL~~q~d~a~~~~~~l~~~~~ 426 (1027)
...++|++|+..|+.|++...+ .|....-...+.++.++++|++++.+++...+..+......+-
T Consensus 40 ~~~~~l~~Ei~~l~~E~~~iS~----qDeFAkwaKl~Rk~~kl~~el~~~~~~~~~~~~~~~~~~~~~~ 104 (161)
T PF04420_consen 40 KEQRQLRKEILQLKRELNAISA----QDEFAKWAKLNRKLDKLEEELEKLNKSLSSEKSSFDKSLSKVL 104 (161)
T ss_dssp HHHHHHHHHHHHHHHHHTTS-T----TTSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHcCCc----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578999999999999988643 3455555566788999999999999999988888876665543
No 64
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=75.54 E-value=2.7 Score=52.65 Aligned_cols=83 Identities=18% Similarity=0.276 Sum_probs=54.7
Q ss_pred eecceeeCCCCChhhHHHhhHHHHHHHHhcCCCeeEEEecccCCCCcccccCChhh-------------HHHHHHHHHHh
Q 001693 70 YTFDRVFSCDCTTRKVYEEGAKEVALAVVSGINSSVFAYGQTSSGKTYTMIGITEY-------------TMSDIYDYIEK 136 (1027)
Q Consensus 70 F~FD~VF~~~asQeeVYe~~v~plV~svL~G~NatIfAYGQTGSGKTyTM~GIi~r-------------av~dLF~~Ie~ 136 (1027)
|....=|.|.-.|..-+.. ++..+-+|...- ..+|.||||||+||..++.. ....|+..+..
T Consensus 2 f~~~~~~~~~~~Q~~ai~~----l~~~~~~~~~~~-~l~Gvtgs~kt~~~a~~~~~~~~p~Lvi~~n~~~A~ql~~el~~ 76 (655)
T TIGR00631 2 FKLHSPFQPAGDQPKAIAK----LVEGLTDGEKHQ-TLLGVTGSGKTFTMANVIAQVNRPTLVIAHNKTLAAQLYNEFKE 76 (655)
T ss_pred ceeccCCCCChHHHHHHHH----HHHhhhcCCCcE-EEECCCCcHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHHHH
Confidence 3334447788888777765 444555664322 37899999999999754432 35567766654
Q ss_pred c-cccceeEeeeeeEeeccccc
Q 001693 137 H-KEREFVLKFSAMEIYNESVR 157 (1027)
Q Consensus 137 ~-~e~~f~V~vS~lEIYnE~V~ 157 (1027)
. ++..+...|||+..|.-..|
T Consensus 77 f~p~~~V~~f~sy~d~y~pe~y 98 (655)
T TIGR00631 77 FFPENAVEYFVSYYDYYQPEAY 98 (655)
T ss_pred hCCCCeEEEEeeecccCCcccc
Confidence 3 34447788999999976543
No 65
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=73.44 E-value=2.2 Score=50.44 Aligned_cols=51 Identities=33% Similarity=0.441 Sum_probs=32.3
Q ss_pred CceeecceeeCCCCChhhHHHhhHHHHHHHHhcCCCeeEEEecccCCCCccccc
Q 001693 67 PTSYTFDRVFSCDCTTRKVYEEGAKEVALAVVSGINSSVFAYGQTSSGKTYTMI 120 (1027)
Q Consensus 67 ~~sF~FD~VF~~~asQeeVYe~~v~plV~svL~G~NatIfAYGQTGSGKTyTM~ 120 (1027)
...|+||.-.. +.+++..|.. +..+.+..-.-|| -||-||.+|+||||-|.
T Consensus 81 ~~~ytFdnFv~-g~~N~~A~aa-~~~va~~~g~~~n-plfi~G~~GlGKTHLl~ 131 (408)
T COG0593 81 NPKYTFDNFVV-GPSNRLAYAA-AKAVAENPGGAYN-PLFIYGGVGLGKTHLLQ 131 (408)
T ss_pred CCCCchhheee-CCchHHHHHH-HHHHHhccCCcCC-cEEEECCCCCCHHHHHH
Confidence 45799998665 4444444442 3333322211255 58899999999999984
No 66
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=72.20 E-value=6.5 Score=50.78 Aligned_cols=22 Identities=36% Similarity=0.523 Sum_probs=17.9
Q ss_pred cCCCeeEEEecccCCCCccccc
Q 001693 99 SGINSSVFAYGQTSSGKTYTMI 120 (1027)
Q Consensus 99 ~G~NatIfAYGQTGSGKTyTM~ 120 (1027)
.|-+.+||.||++|+|||.|+.
T Consensus 778 sgpnnvLYIyG~PGTGKTATVK 799 (1164)
T PTZ00112 778 SGSNQILYISGMPGTGKTATVY 799 (1164)
T ss_pred CCCCceEEEECCCCCCHHHHHH
Confidence 3555678899999999999863
No 67
>PRK06921 hypothetical protein; Provisional
Probab=72.16 E-value=2.5 Score=47.09 Aligned_cols=38 Identities=29% Similarity=0.295 Sum_probs=25.7
Q ss_pred HHHhhHHHHHHHHhc---CCCeeEEEecccCCCCcccccCCh
Q 001693 85 VYEEGAKEVALAVVS---GINSSVFAYGQTSSGKTYTMIGIT 123 (1027)
Q Consensus 85 VYe~~v~plV~svL~---G~NatIfAYGQTGSGKTyTM~GIi 123 (1027)
+|. .+...++.+-. +....|+-||++|+||||.+.+|.
T Consensus 98 ~~~-~~~~~~~~f~~~~~~~~~~l~l~G~~G~GKThLa~aia 138 (266)
T PRK06921 98 AYE-CAVEYVKDFEKIQESRKNSIALLGQPGSGKTHLLTAAA 138 (266)
T ss_pred HHH-HHHHHHHHHHHhcccCCCeEEEECCCCCcHHHHHHHHH
Confidence 443 35556665532 234568899999999999986543
No 68
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=69.96 E-value=2.4 Score=52.22 Aligned_cols=29 Identities=28% Similarity=0.361 Sum_probs=24.2
Q ss_pred HHHHHhcCCCeeEEEecccCCCCcccccC
Q 001693 93 VALAVVSGINSSVFAYGQTSSGKTYTMIG 121 (1027)
Q Consensus 93 lV~svL~G~NatIfAYGQTGSGKTyTM~G 121 (1027)
.+..++..-++.|+..|+||||||.||..
T Consensus 307 ~l~~~~~~~~Glilv~G~tGSGKTTtl~a 335 (564)
T TIGR02538 307 LFLEAIHKPQGMVLVTGPTGSGKTVSLYT 335 (564)
T ss_pred HHHHHHHhcCCeEEEECCCCCCHHHHHHH
Confidence 45566777788999999999999999854
No 69
>PRK10436 hypothetical protein; Provisional
Probab=69.80 E-value=2.6 Score=50.75 Aligned_cols=29 Identities=24% Similarity=0.258 Sum_probs=23.8
Q ss_pred HHHHHhcCCCeeEEEecccCCCCcccccC
Q 001693 93 VALAVVSGINSSVFAYGQTSSGKTYTMIG 121 (1027)
Q Consensus 93 lV~svL~G~NatIfAYGQTGSGKTyTM~G 121 (1027)
.+..++..-++.|+..|+||||||.||.-
T Consensus 209 ~l~~~~~~~~GliLvtGpTGSGKTTtL~a 237 (462)
T PRK10436 209 QFRQALQQPQGLILVTGPTGSGKTVTLYS 237 (462)
T ss_pred HHHHHHHhcCCeEEEECCCCCChHHHHHH
Confidence 45566677788999999999999999853
No 70
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=69.63 E-value=2.7 Score=50.81 Aligned_cols=29 Identities=24% Similarity=0.272 Sum_probs=23.6
Q ss_pred HHHHHhcCCCeeEEEecccCCCCcccccC
Q 001693 93 VALAVVSGINSSVFAYGQTSSGKTYTMIG 121 (1027)
Q Consensus 93 lV~svL~G~NatIfAYGQTGSGKTyTM~G 121 (1027)
.+..++..-++.|+..|+||||||.||..
T Consensus 233 ~l~~~~~~~~GlilitGptGSGKTTtL~a 261 (486)
T TIGR02533 233 RFERLIRRPHGIILVTGPTGSGKTTTLYA 261 (486)
T ss_pred HHHHHHhcCCCEEEEEcCCCCCHHHHHHH
Confidence 45566677778899999999999999853
No 71
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=68.12 E-value=3.2 Score=46.01 Aligned_cols=52 Identities=19% Similarity=0.137 Sum_probs=34.1
Q ss_pred eeecceeeCCCCChhhHHHhhHHHHHHHHhcCCCeeEEEecccCCCCcccccCCh
Q 001693 69 SYTFDRVFSCDCTTRKVYEEGAKEVALAVVSGINSSVFAYGQTSSGKTYTMIGIT 123 (1027)
Q Consensus 69 sF~FD~VF~~~asQeeVYe~~v~plV~svL~G~NatIfAYGQTGSGKTyTM~GIi 123 (1027)
+|.|..+-.....+..+|.. +..++..+-+|.| ++-||++|+||||-..+|.
T Consensus 75 ~~~~~d~~~~~~~~~~~l~~-~~~~~~~~~~~~n--l~l~G~~G~GKThLa~Ai~ 126 (254)
T COG1484 75 TFEEFDFEFQPGIDKKALED-LASLVEFFERGEN--LVLLGPPGVGKTHLAIAIG 126 (254)
T ss_pred CcccccccCCcchhHHHHHH-HHHHHHHhccCCc--EEEECCCCCcHHHHHHHHH
Confidence 44444443445567777776 5556666554444 6779999999999986543
No 72
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=68.02 E-value=2.7 Score=41.86 Aligned_cols=26 Identities=42% Similarity=0.519 Sum_probs=20.1
Q ss_pred HHHHHhcCCCeeEEEecccCCCCccccc
Q 001693 93 VALAVVSGINSSVFAYGQTSSGKTYTMI 120 (1027)
Q Consensus 93 lV~svL~G~NatIfAYGQTGSGKTyTM~ 120 (1027)
++..+.+|.| ++..|+||+|||+...
T Consensus 7 ~~~~i~~~~~--~li~aptGsGKT~~~~ 32 (169)
T PF00270_consen 7 AIEAIISGKN--VLISAPTGSGKTLAYI 32 (169)
T ss_dssp HHHHHHTTSE--EEEECSTTSSHHHHHH
T ss_pred HHHHHHcCCC--EEEECCCCCccHHHHH
Confidence 4455666766 7788999999999864
No 73
>PF12846 AAA_10: AAA-like domain
Probab=67.83 E-value=1.8 Score=47.01 Aligned_cols=20 Identities=35% Similarity=0.478 Sum_probs=16.6
Q ss_pred CeeEEEecccCCCCcccccC
Q 001693 102 NSSVFAYGQTSSGKTYTMIG 121 (1027)
Q Consensus 102 NatIfAYGQTGSGKTyTM~G 121 (1027)
|..++..|.||||||++|.-
T Consensus 1 n~h~~i~G~tGsGKT~~~~~ 20 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLKN 20 (304)
T ss_pred CCeEEEECCCCCcHHHHHHH
Confidence 45678899999999998853
No 74
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=67.51 E-value=1.9 Score=46.05 Aligned_cols=24 Identities=29% Similarity=0.405 Sum_probs=16.8
Q ss_pred eEEEecccCCCCcccccCChhhHH
Q 001693 104 SVFAYGQTSSGKTYTMIGITEYTM 127 (1027)
Q Consensus 104 tIfAYGQTGSGKTyTM~GIi~rav 127 (1027)
-+..+|.||||||+|+.-++..++
T Consensus 25 H~~I~G~TGsGKS~~~~~ll~~l~ 48 (229)
T PF01935_consen 25 HIAIFGTTGSGKSNTVKVLLEELL 48 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH
Confidence 345679999999999854444333
No 75
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=67.33 E-value=4 Score=48.93 Aligned_cols=53 Identities=21% Similarity=0.229 Sum_probs=34.6
Q ss_pred CceeecceeeCCCCChhhHHHhhHHHHHHHH--hcC--CCeeEEEecccCCCCcccccCC
Q 001693 67 PTSYTFDRVFSCDCTTRKVYEEGAKEVALAV--VSG--INSSVFAYGQTSSGKTYTMIGI 122 (1027)
Q Consensus 67 ~~sF~FD~VF~~~asQeeVYe~~v~plV~sv--L~G--~NatIfAYGQTGSGKTyTM~GI 122 (1027)
...|+||.-+.. .+++..|. .+..+.... ..| || -+|-||++|+||||.+..+
T Consensus 105 ~~~~tFdnFv~g-~~N~~a~~-~a~~~a~~~~~~~~~~~n-pl~L~G~~G~GKTHLl~Ai 161 (445)
T PRK12422 105 DPLMTFANFLVT-PENDLPHR-ILQEFTKVSEQGKGFPFN-PIYLFGPEGSGKTHLMQAA 161 (445)
T ss_pred CccccccceeeC-CcHHHHHH-HHHHHHhccccccCCCCc-eEEEEcCCCCCHHHHHHHH
Confidence 457999987753 45555554 355555433 223 45 3778999999999998643
No 76
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=67.09 E-value=2.2 Score=39.62 Aligned_cols=19 Identities=26% Similarity=0.317 Sum_probs=15.9
Q ss_pred eeEEEecccCCCCcccccC
Q 001693 103 SSVFAYGQTSSGKTYTMIG 121 (1027)
Q Consensus 103 atIfAYGQTGSGKTyTM~G 121 (1027)
..++-+|++|||||+++..
T Consensus 3 ~~~~l~G~~G~GKTtl~~~ 21 (148)
T smart00382 3 EVILIVGPPGSGKTTLARA 21 (148)
T ss_pred CEEEEECCCCCcHHHHHHH
Confidence 4578899999999999743
No 77
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=66.30 E-value=14 Score=40.93 Aligned_cols=54 Identities=17% Similarity=0.310 Sum_probs=34.0
Q ss_pred EecCHHHHHHHHHHhhhhhccccccCCCcCCCceeEEEEEEEeecccccCCCCcceeeeEEEEecCCCccc
Q 001693 186 TLKDWNHLKELLSTCEAQRQIGETSLNETSSRSHQILRLTVESSACEFIGNDPSSLTATVNFVDLAGSERA 256 (1027)
Q Consensus 186 ~V~S~ee~~~LL~~g~~~R~~~sT~~N~~SSRSH~IftI~Ve~~~~e~~g~~~s~~~SkL~fVDLAGSER~ 256 (1027)
.+.+++++...+..+... ..+. ...-|.-+++|.|.... .-.|.||||+|-.+.
T Consensus 85 ~~~~~~~v~~~i~~~~~~-~~~~-----~~~~s~~~i~l~i~~p~-----------~~~ltLIDlPGl~~~ 138 (240)
T smart00053 85 KFTDFDEVRNEIEAETDR-VTGT-----NKGISPVPINLRVYSPH-----------VLNLTLIDLPGITKV 138 (240)
T ss_pred ccCCHHHHHHHHHHHHHH-hcCC-----CCcccCcceEEEEeCCC-----------CCceEEEeCCCcccc
Confidence 446788888888765432 1111 12345668888876432 246899999999643
No 78
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=65.94 E-value=4.1 Score=47.77 Aligned_cols=51 Identities=22% Similarity=0.306 Sum_probs=30.6
Q ss_pred eeecceeeCCCCChhhHHHhhHHHHHH-HHhc--C--CCeeEEEecccCCCCcccc
Q 001693 69 SYTFDRVFSCDCTTRKVYEEGAKEVAL-AVVS--G--INSSVFAYGQTSSGKTYTM 119 (1027)
Q Consensus 69 sF~FD~VF~~~asQeeVYe~~v~plV~-svL~--G--~NatIfAYGQTGSGKTyTM 119 (1027)
.++||.|-+-+..-+++.+.+..|+.. ..+. | ....|+-||++|+|||+..
T Consensus 127 ~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lA 182 (389)
T PRK03992 127 NVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLA 182 (389)
T ss_pred CCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHH
Confidence 456666665544445555554444443 2222 2 2345889999999999876
No 79
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=65.70 E-value=2.7 Score=43.99 Aligned_cols=22 Identities=27% Similarity=0.548 Sum_probs=17.6
Q ss_pred eeEEEecccCCCCcccccCChh
Q 001693 103 SSVFAYGQTSSGKTYTMIGITE 124 (1027)
Q Consensus 103 atIfAYGQTGSGKTyTM~GIi~ 124 (1027)
-.++-||++|+||||...++.-
T Consensus 48 ~~l~l~G~~G~GKThLa~ai~~ 69 (178)
T PF01695_consen 48 ENLILYGPPGTGKTHLAVAIAN 69 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEEhhHhHHHHHHHHHHHH
Confidence 4588999999999999875543
No 80
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=65.52 E-value=2 Score=41.21 Aligned_cols=18 Identities=28% Similarity=0.346 Sum_probs=12.9
Q ss_pred CeeEEEecccCCCCcccc
Q 001693 102 NSSVFAYGQTSSGKTYTM 119 (1027)
Q Consensus 102 NatIfAYGQTGSGKTyTM 119 (1027)
..+++.+|.+|+|||.++
T Consensus 4 ~~~~~i~G~~G~GKT~~~ 21 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLI 21 (131)
T ss_dssp ---EEEEE-TTSSHHHHH
T ss_pred CcccEEEcCCCCCHHHHH
Confidence 357899999999999875
No 81
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=64.86 E-value=3.5 Score=47.53 Aligned_cols=30 Identities=23% Similarity=0.287 Sum_probs=22.7
Q ss_pred HHHHHHhcCCCeeEEEecccCCCCcccccC
Q 001693 92 EVALAVVSGINSSVFAYGQTSSGKTYTMIG 121 (1027)
Q Consensus 92 plV~svL~G~NatIfAYGQTGSGKTyTM~G 121 (1027)
+.+..++.--.+.|+-.|+||||||+||..
T Consensus 112 ~~l~~~~~~~~g~ili~G~tGSGKTT~l~a 141 (343)
T TIGR01420 112 PVLRELAERPRGLILVTGPTGSGKSTTLAS 141 (343)
T ss_pred HHHHHHHhhcCcEEEEECCCCCCHHHHHHH
Confidence 455555554457789999999999999843
No 82
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=64.82 E-value=11 Score=44.44 Aligned_cols=69 Identities=13% Similarity=0.184 Sum_probs=48.6
Q ss_pred ceeecceeeCCCCChhhHHHhhHHHHHHHHhc----CCCeeEEEecccCCCCccccc-----------------------
Q 001693 68 TSYTFDRVFSCDCTTRKVYEEGAKEVALAVVS----GINSSVFAYGQTSSGKTYTMI----------------------- 120 (1027)
Q Consensus 68 ~sF~FD~VF~~~asQeeVYe~~v~plV~svL~----G~NatIfAYGQTGSGKTyTM~----------------------- 120 (1027)
..+.||.+.+.----..+.+.++..++.+++. -.---+.-||+.|+|||+..-
T Consensus 110 ~~~~f~~~~g~~~~~p~f~dk~~~hi~kn~l~~~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~v 189 (413)
T PLN00020 110 RTRSFDNLVGGYYIAPAFMDKVAVHIAKNFLALPNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENA 189 (413)
T ss_pred hhcchhhhcCccccCHHHHHHHHHHHHhhhhhccCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcC
Confidence 35677887766555566777777777777774 233457789999999999852
Q ss_pred CChhhHHHHHHHHHHh
Q 001693 121 GITEYTMSDIYDYIEK 136 (1027)
Q Consensus 121 GIi~rav~dLF~~Ie~ 136 (1027)
|=..+.++++|.....
T Consensus 190 GEsEk~IR~~F~~A~~ 205 (413)
T PLN00020 190 GEPGKLIRQRYREAAD 205 (413)
T ss_pred CcHHHHHHHHHHHHHH
Confidence 4445678888876654
No 83
>PF13245 AAA_19: Part of AAA domain
Probab=64.76 E-value=3.5 Score=37.45 Aligned_cols=27 Identities=19% Similarity=0.217 Sum_probs=17.9
Q ss_pred HHHHhcCCCeeEEEecccCCCCcccccC
Q 001693 94 ALAVVSGINSSVFAYGQTSSGKTYTMIG 121 (1027)
Q Consensus 94 V~svL~G~NatIfAYGQTGSGKTyTM~G 121 (1027)
|...+. -+..++..|+.|||||+|+..
T Consensus 3 v~~al~-~~~~~vv~g~pGtGKT~~~~~ 29 (76)
T PF13245_consen 3 VRRALA-GSPLFVVQGPPGTGKTTTLAA 29 (76)
T ss_pred HHHHHh-hCCeEEEECCCCCCHHHHHHH
Confidence 344445 233344589999999999754
No 84
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=64.34 E-value=3.8 Score=47.99 Aligned_cols=28 Identities=18% Similarity=0.200 Sum_probs=20.2
Q ss_pred HHHHHhcCCCeeEEEecccCCCCcccccC
Q 001693 93 VALAVVSGINSSVFAYGQTSSGKTYTMIG 121 (1027)
Q Consensus 93 lV~svL~G~NatIfAYGQTGSGKTyTM~G 121 (1027)
+++.++. .++.|+..|+||||||+||..
T Consensus 141 ~~~~l~~-~~GlilI~G~TGSGKTT~l~a 168 (372)
T TIGR02525 141 LFNSLLP-AAGLGLICGETGSGKSTLAAS 168 (372)
T ss_pred HHHHHHh-cCCEEEEECCCCCCHHHHHHH
Confidence 3444443 456788899999999999843
No 85
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=63.75 E-value=2.8 Score=44.42 Aligned_cols=18 Identities=39% Similarity=0.506 Sum_probs=15.8
Q ss_pred eeEEEecccCCCCccccc
Q 001693 103 SSVFAYGQTSSGKTYTMI 120 (1027)
Q Consensus 103 atIfAYGQTGSGKTyTM~ 120 (1027)
+.|+-.|+||||||+++.
T Consensus 2 GlilI~GptGSGKTTll~ 19 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLA 19 (198)
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 578889999999999974
No 86
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=63.67 E-value=4.4 Score=45.15 Aligned_cols=29 Identities=24% Similarity=0.327 Sum_probs=21.6
Q ss_pred HHHHHhcCCCeeEEEecccCCCCcccccC
Q 001693 93 VALAVVSGINSSVFAYGQTSSGKTYTMIG 121 (1027)
Q Consensus 93 lV~svL~G~NatIfAYGQTGSGKTyTM~G 121 (1027)
.+..++..-.+.|+-.|.||||||.||..
T Consensus 71 ~l~~~~~~~~GlilisG~tGSGKTT~l~a 99 (264)
T cd01129 71 IFRKLLEKPHGIILVTGPTGSGKTTTLYS 99 (264)
T ss_pred HHHHHHhcCCCEEEEECCCCCcHHHHHHH
Confidence 34555555566788889999999999843
No 87
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=63.58 E-value=2.7 Score=46.21 Aligned_cols=18 Identities=33% Similarity=0.508 Sum_probs=15.3
Q ss_pred CeeEEEecccCCCCcccc
Q 001693 102 NSSVFAYGQTSSGKTYTM 119 (1027)
Q Consensus 102 NatIfAYGQTGSGKTyTM 119 (1027)
.+.|+..|.||||||.+|
T Consensus 127 ~~~ili~G~tGSGKTT~l 144 (270)
T PF00437_consen 127 RGNILISGPTGSGKTTLL 144 (270)
T ss_dssp TEEEEEEESTTSSHHHHH
T ss_pred ceEEEEECCCccccchHH
Confidence 556777799999999997
No 88
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=63.08 E-value=5.2 Score=43.48 Aligned_cols=22 Identities=23% Similarity=0.348 Sum_probs=17.1
Q ss_pred hcCCCeeEEEecccCCCCcccc
Q 001693 98 VSGINSSVFAYGQTSSGKTYTM 119 (1027)
Q Consensus 98 L~G~NatIfAYGQTGSGKTyTM 119 (1027)
+......++-+|+.|+|||+.+
T Consensus 39 ~~~~~~~~~l~G~~G~GKTtl~ 60 (269)
T TIGR03015 39 LSQREGFILITGEVGAGKTTLI 60 (269)
T ss_pred HhcCCCEEEEEcCCCCCHHHHH
Confidence 3444556888999999999876
No 89
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=62.84 E-value=4 Score=47.52 Aligned_cols=25 Identities=28% Similarity=0.403 Sum_probs=19.8
Q ss_pred HhcCCCeeEEEecccCCCCcccccC
Q 001693 97 VVSGINSSVFAYGQTSSGKTYTMIG 121 (1027)
Q Consensus 97 vL~G~NatIfAYGQTGSGKTyTM~G 121 (1027)
++.--.+.|+..|+||||||.||..
T Consensus 129 ~~~~~~glilI~GpTGSGKTTtL~a 153 (358)
T TIGR02524 129 AIAPQEGIVFITGATGSGKSTLLAA 153 (358)
T ss_pred HHhccCCEEEEECCCCCCHHHHHHH
Confidence 3344568899999999999999843
No 90
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=62.53 E-value=6 Score=45.36 Aligned_cols=42 Identities=21% Similarity=0.160 Sum_probs=27.0
Q ss_pred CCCChhhHHHhhHHHHHHHHhcC-CCeeEEEecccCCCCcccc
Q 001693 78 CDCTTRKVYEEGAKEVALAVVSG-INSSVFAYGQTSSGKTYTM 119 (1027)
Q Consensus 78 ~~asQeeVYe~~v~plV~svL~G-~NatIfAYGQTGSGKTyTM 119 (1027)
|.+.-+-++++.+..++.+.+.+ .---.+-||+.|+|||.|.
T Consensus 32 Pkt~de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTSta 74 (346)
T KOG0989|consen 32 PKTFDELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTA 74 (346)
T ss_pred CCcHHhhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHH
Confidence 33333444555555555555554 4445778999999999997
No 91
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=62.07 E-value=5.4 Score=44.93 Aligned_cols=31 Identities=32% Similarity=0.300 Sum_probs=25.6
Q ss_pred HHHHHHHHhcCCCeeEEEecccCCCCccccc
Q 001693 90 AKEVALAVVSGINSSVFAYGQTSSGKTYTMI 120 (1027)
Q Consensus 90 v~plV~svL~G~NatIfAYGQTGSGKTyTM~ 120 (1027)
..+++..+.--.-+.|+..|.|||||+.||-
T Consensus 115 LPevlk~la~~kRGLviiVGaTGSGKSTtmA 145 (375)
T COG5008 115 LPEVLKDLALAKRGLVIIVGATGSGKSTTMA 145 (375)
T ss_pred CcHHHHHhhcccCceEEEECCCCCCchhhHH
Confidence 4566777776777789999999999999995
No 92
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=60.30 E-value=4 Score=42.47 Aligned_cols=29 Identities=28% Similarity=0.452 Sum_probs=20.8
Q ss_pred HHHHHHHhcCCCeeEEEecccCCCCcccc
Q 001693 91 KEVALAVVSGINSSVFAYGQTSSGKTYTM 119 (1027)
Q Consensus 91 ~plV~svL~G~NatIfAYGQTGSGKTyTM 119 (1027)
..+...+-.|.+..++-||+.|+|||+.|
T Consensus 9 ~~l~~~l~~~~~~~~~l~G~rg~GKTsLl 37 (234)
T PF01637_consen 9 EKLKELLESGPSQHILLYGPRGSGKTSLL 37 (234)
T ss_dssp HHHHHCHHH--SSEEEEEESTTSSHHHHH
T ss_pred HHHHHHHHhhcCcEEEEEcCCcCCHHHHH
Confidence 33444444577889999999999999876
No 93
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=60.11 E-value=4.7 Score=50.66 Aligned_cols=81 Identities=27% Similarity=0.494 Sum_probs=40.2
Q ss_pred eeecceeeCCCCChhhHHHhhHHHHHHHHhcCCCeeEEEecccCCCCcccccC------ChhhHHHHHHHHHHhccccce
Q 001693 69 SYTFDRVFSCDCTTRKVYEEGAKEVALAVVSGINSSVFAYGQTSSGKTYTMIG------ITEYTMSDIYDYIEKHKEREF 142 (1027)
Q Consensus 69 sF~FD~VF~~~asQeeVYe~~v~plV~svL~G~NatIfAYGQTGSGKTyTM~G------Ii~rav~dLF~~Ie~~~e~~f 142 (1027)
.+.|+.+......+..-+.. +.+-+..++++++.. +|++|++.+ +..+....++......+..
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 95 (670)
T KOG0239|consen 27 RFELARVYSPSVGQPSLFSD-VQPFVQSALEGLNVK--------AGLTYTMEGSNQPGGLLARLFKELIDLANSDKTS-- 95 (670)
T ss_pred ccCccccccccccccccCCc-cccchhhhhhhhhcc--------hhhhhhhhhhcCcchhHHHhhhhcccccccCCCc--
Confidence 45566555543322222222 222333444555543 899999974 2223333322221111111
Q ss_pred eEeeeeeEeeccccccccCCCC
Q 001693 143 VLKFSAMEIYNESVRDLLSADT 164 (1027)
Q Consensus 143 ~V~vS~lEIYnE~V~DLL~~~~ 164 (1027)
..++.|++.+.|++..-.
T Consensus 96 ----~~~~~~~~~~~~~~~~~q 113 (670)
T KOG0239|consen 96 ----NVVEAYNERLRDLLSELQ 113 (670)
T ss_pred ----hhHHHHHHHHhhhccccc
Confidence 167889999999986433
No 94
>PRK09183 transposase/IS protein; Provisional
Probab=59.69 E-value=3.8 Score=45.47 Aligned_cols=46 Identities=17% Similarity=0.307 Sum_probs=27.0
Q ss_pred cceeeCCCCChhhHHHhhHHHHHHHHhcCCCeeEEEecccCCCCcccccCC
Q 001693 72 FDRVFSCDCTTRKVYEEGAKEVALAVVSGINSSVFAYGQTSSGKTYTMIGI 122 (1027)
Q Consensus 72 FD~VF~~~asQeeVYe~~v~plV~svL~G~NatIfAYGQTGSGKTyTM~GI 122 (1027)
||.=|.+..+...+..-..... +-.|.| |+-+|++|+||||.+.++
T Consensus 77 fd~~~~~~~~~~~i~~L~~~~~---i~~~~~--v~l~Gp~GtGKThLa~al 122 (259)
T PRK09183 77 YDFTFATGAPQKQLQSLRSLSF---IERNEN--IVLLGPSGVGKTHLAIAL 122 (259)
T ss_pred cccccCCCCCHHHHHHHhcCCc---hhcCCe--EEEEeCCCCCHHHHHHHH
Confidence 4444665555544433211111 224554 567999999999998654
No 95
>PF14282 FlxA: FlxA-like protein
Probab=59.32 E-value=44 Score=32.54 Aligned_cols=61 Identities=15% Similarity=0.226 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001693 357 KALVKHLQRELSRLENELRGSGPVFITPDSVSVLREKDLRIEKLEKEVDELTMQRDLARTEVENLL 422 (1027)
Q Consensus 357 kalik~Lq~Ei~~Le~eL~~~~~~~~~~~~~~~l~ek~~~i~kle~ei~eL~~q~d~a~~~~~~l~ 422 (1027)
...|+.|+++|..|..+|....... ....+++..+++.|..+|..|+.|+..++.+.....
T Consensus 18 ~~~I~~L~~Qi~~Lq~ql~~l~~~~-----~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq~q~~~~~ 78 (106)
T PF14282_consen 18 DSQIEQLQKQIKQLQEQLQELSQDS-----DLDAEQKQQQIQLLQAQIQQLQAQIAQLQSQQAEQQ 78 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccc-----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678999999999999987654311 112345667788888888888888877776655433
No 96
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=59.28 E-value=5 Score=42.50 Aligned_cols=29 Identities=21% Similarity=0.257 Sum_probs=20.4
Q ss_pred HHHHHHhcCCCeeEEEecccCCCCccccc
Q 001693 92 EVALAVVSGINSSVFAYGQTSSGKTYTMI 120 (1027)
Q Consensus 92 plV~svL~G~NatIfAYGQTGSGKTyTM~ 120 (1027)
..+..++...+..++..|..||||||+|.
T Consensus 8 ~a~~~~l~~~~~~~~l~G~aGtGKT~~l~ 36 (196)
T PF13604_consen 8 EAVRAILTSGDRVSVLQGPAGTGKTTLLK 36 (196)
T ss_dssp HHHHHHHHCTCSEEEEEESTTSTHHHHHH
T ss_pred HHHHHHHhcCCeEEEEEECCCCCHHHHHH
Confidence 34455555555556668999999999874
No 97
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=58.33 E-value=6.4 Score=46.55 Aligned_cols=52 Identities=19% Similarity=0.277 Sum_probs=35.2
Q ss_pred eeecceeeCCCCChhhHHHhhHHHHHH-HHhc--C--CCeeEEEecccCCCCccccc
Q 001693 69 SYTFDRVFSCDCTTRKVYEEGAKEVAL-AVVS--G--INSSVFAYGQTSSGKTYTMI 120 (1027)
Q Consensus 69 sF~FD~VF~~~asQeeVYe~~v~plV~-svL~--G--~NatIfAYGQTGSGKTyTM~ 120 (1027)
..+|+.|-+.+..-+++.+.+..|+.. .++. | ....|+-||++|+|||+...
T Consensus 141 ~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAk 197 (398)
T PTZ00454 141 DVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAK 197 (398)
T ss_pred CCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHH
Confidence 467888887665555666655555543 2333 2 34568899999999999873
No 98
>PF13479 AAA_24: AAA domain
Probab=56.75 E-value=4.9 Score=43.01 Aligned_cols=19 Identities=32% Similarity=0.461 Sum_probs=16.1
Q ss_pred CeeEEEecccCCCCccccc
Q 001693 102 NSSVFAYGQTSSGKTYTMI 120 (1027)
Q Consensus 102 NatIfAYGQTGSGKTyTM~ 120 (1027)
+..++.||++|+|||++..
T Consensus 3 ~~~~lIyG~~G~GKTt~a~ 21 (213)
T PF13479_consen 3 PIKILIYGPPGSGKTTLAA 21 (213)
T ss_pred ceEEEEECCCCCCHHHHHH
Confidence 4568899999999999874
No 99
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=56.20 E-value=6 Score=44.93 Aligned_cols=29 Identities=28% Similarity=0.335 Sum_probs=20.9
Q ss_pred HHHHHHHhcCCCeeEEEecccCCCCccccc
Q 001693 91 KEVALAVVSGINSSVFAYGQTSSGKTYTMI 120 (1027)
Q Consensus 91 ~plV~svL~G~NatIfAYGQTGSGKTyTM~ 120 (1027)
..++..++.+ ...|+..|.||||||++|.
T Consensus 122 ~~~L~~~v~~-~~~ilI~G~tGSGKTTll~ 150 (299)
T TIGR02782 122 RDVLREAVLA-RKNILVVGGTGSGKTTLAN 150 (299)
T ss_pred HHHHHHHHHc-CCeEEEECCCCCCHHHHHH
Confidence 3455555554 4567888999999999873
No 100
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=55.97 E-value=6.5 Score=39.05 Aligned_cols=27 Identities=33% Similarity=0.388 Sum_probs=18.3
Q ss_pred HHHHhcCCCeeEEEecccCCCCcccccC
Q 001693 94 ALAVVSGINSSVFAYGQTSSGKTYTMIG 121 (1027)
Q Consensus 94 V~svL~G~NatIfAYGQTGSGKTyTM~G 121 (1027)
+..++.+. ..++..|.+|||||.++..
T Consensus 17 ~~~~~~~~-~~~~i~~~~GsGKT~~~~~ 43 (201)
T smart00487 17 IEALLSGL-RDVILAAPTGSGKTLAALL 43 (201)
T ss_pred HHHHHcCC-CcEEEECCCCCchhHHHHH
Confidence 34444442 3456678999999998753
No 101
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=55.42 E-value=8.5 Score=43.20 Aligned_cols=43 Identities=23% Similarity=0.281 Sum_probs=26.4
Q ss_pred ecceeeCCCCChhhHHHhhHHHHHHHHhcCCCeeEEEecccCCCCcccccC
Q 001693 71 TFDRVFSCDCTTRKVYEEGAKEVALAVVSGINSSVFAYGQTSSGKTYTMIG 121 (1027)
Q Consensus 71 ~FD~VF~~~asQeeVYe~~v~plV~svL~G~NatIfAYGQTGSGKTyTM~G 121 (1027)
+||.+.+ +.++.+. +...+-.|....++-||++|+|||++...
T Consensus 13 ~~~~~~g----~~~~~~~----L~~~~~~~~~~~lll~Gp~GtGKT~la~~ 55 (337)
T PRK12402 13 LLEDILG----QDEVVER----LSRAVDSPNLPHLLVQGPPGSGKTAAVRA 55 (337)
T ss_pred cHHHhcC----CHHHHHH----HHHHHhCCCCceEEEECCCCCCHHHHHHH
Confidence 5777765 3333333 22222244434588899999999998743
No 102
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=55.04 E-value=4.2 Score=42.24 Aligned_cols=32 Identities=22% Similarity=0.237 Sum_probs=19.4
Q ss_pred HHHHhcCCCeeEEEecccCCCCcccccCChhhH
Q 001693 94 ALAVVSGINSSVFAYGQTSSGKTYTMIGITEYT 126 (1027)
Q Consensus 94 V~svL~G~NatIfAYGQTGSGKTyTM~GIi~ra 126 (1027)
|..++..-. ..+..|+.|||||+|+..++-.+
T Consensus 10 i~~~~~~~~-~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 10 IQSALSSNG-ITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp HHHHCTSSE--EEEE-STTSSHHHHHHHHHHHH
T ss_pred HHHHHcCCC-CEEEECCCCCChHHHHHHHHHHh
Confidence 444443333 45668999999999986654444
No 103
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=54.96 E-value=6.6 Score=45.08 Aligned_cols=29 Identities=31% Similarity=0.392 Sum_probs=20.2
Q ss_pred HHHHHHhcCCCeeEEEecccCCCCcccccC
Q 001693 92 EVALAVVSGINSSVFAYGQTSSGKTYTMIG 121 (1027)
Q Consensus 92 plV~svL~G~NatIfAYGQTGSGKTyTM~G 121 (1027)
.++..++.+. ..|+..|.||||||++|..
T Consensus 139 ~~L~~~v~~~-~~ilI~G~tGSGKTTll~a 167 (319)
T PRK13894 139 EAIIAAVRAH-RNILVIGGTGSGKTTLVNA 167 (319)
T ss_pred HHHHHHHHcC-CeEEEECCCCCCHHHHHHH
Confidence 4555555553 4566679999999987743
No 104
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=54.54 E-value=8.6 Score=43.07 Aligned_cols=23 Identities=17% Similarity=0.186 Sum_probs=17.2
Q ss_pred cCC-CeeEEEecccCCCCcccccC
Q 001693 99 SGI-NSSVFAYGQTSSGKTYTMIG 121 (1027)
Q Consensus 99 ~G~-NatIfAYGQTGSGKTyTM~G 121 (1027)
.|. ...++-||++|+|||+.+..
T Consensus 39 ~~~~~~~lll~G~~G~GKT~la~~ 62 (316)
T PHA02544 39 KGRIPNMLLHSPSPGTGKTTVAKA 62 (316)
T ss_pred cCCCCeEEEeeCcCCCCHHHHHHH
Confidence 453 34666699999999998743
No 105
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=54.39 E-value=8.8 Score=44.60 Aligned_cols=37 Identities=16% Similarity=0.382 Sum_probs=27.4
Q ss_pred CCChhhHHHhhHHHHHHHHhcCCCeeEEEecccCCCCcccc
Q 001693 79 DCTTRKVYEEGAKEVALAVVSGINSSVFAYGQTSSGKTYTM 119 (1027)
Q Consensus 79 ~asQeeVYe~~v~plV~svL~G~NatIfAYGQTGSGKTyTM 119 (1027)
+..|+.+|+.+...+.. .....+|.-|.-|+||||.+
T Consensus 3 n~eQ~~~~~~v~~~~~~----~~~~~~fv~G~~GtGKs~l~ 39 (364)
T PF05970_consen 3 NEEQRRVFDTVIEAIEN----EEGLNFFVTGPAGTGKSFLI 39 (364)
T ss_pred CHHHHHHHHHHHHHHHc----cCCcEEEEEcCCCCChhHHH
Confidence 35688999986655443 34456788999999999986
No 106
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=54.36 E-value=3.2 Score=43.63 Aligned_cols=18 Identities=28% Similarity=0.362 Sum_probs=13.7
Q ss_pred eEEEecccCCCCcccccC
Q 001693 104 SVFAYGQTSSGKTYTMIG 121 (1027)
Q Consensus 104 tIfAYGQTGSGKTyTM~G 121 (1027)
-++.+|+||||||.++..
T Consensus 40 h~li~G~tgsGKS~~l~~ 57 (205)
T PF01580_consen 40 HLLIAGATGSGKSTLLRT 57 (205)
T ss_dssp SEEEE--TTSSHHHHHHH
T ss_pred eEEEEcCCCCCccHHHHH
Confidence 578899999999999854
No 107
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=54.33 E-value=95 Score=29.58 Aligned_cols=69 Identities=19% Similarity=0.169 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCcchhHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001693 358 ALVKHLQRELSRLENELRGSGPVFITPDSVSVLREK------------DLRIEKLEKEVDELTMQRDLARTEVENLLRGA 425 (1027)
Q Consensus 358 alik~Lq~Ei~~Le~eL~~~~~~~~~~~~~~~l~ek------------~~~i~kle~ei~eL~~q~d~a~~~~~~l~~~~ 425 (1027)
.-+..|+.++..|+..++........+-....|... ..+.+.+..++..|+.+...++.++..|.+++
T Consensus 19 ~e~~~L~~~~~~L~~~~R~~~GedL~~Ls~~eL~~LE~~Le~aL~~VR~rK~~~l~~~i~~l~~ke~~l~~en~~L~~~~ 98 (100)
T PF01486_consen 19 QEIAKLRKENESLQKELRHLMGEDLESLSLKELQQLEQQLESALKRVRSRKDQLLMEQIEELKKKERELEEENNQLRQKI 98 (100)
T ss_pred HHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456778888888888877654433322223322222 22344577888888888888888888888776
Q ss_pred c
Q 001693 426 G 426 (1027)
Q Consensus 426 ~ 426 (1027)
.
T Consensus 99 ~ 99 (100)
T PF01486_consen 99 E 99 (100)
T ss_pred c
Confidence 4
No 108
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=54.08 E-value=4.5 Score=38.42 Aligned_cols=15 Identities=27% Similarity=0.412 Sum_probs=13.2
Q ss_pred EEEecccCCCCcccc
Q 001693 105 VFAYGQTSSGKTYTM 119 (1027)
Q Consensus 105 IfAYGQTGSGKTyTM 119 (1027)
|+-||+.|+|||+..
T Consensus 1 ill~G~~G~GKT~l~ 15 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLA 15 (132)
T ss_dssp EEEESSTTSSHHHHH
T ss_pred CEEECcCCCCeeHHH
Confidence 578999999999875
No 109
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=53.59 E-value=17 Score=46.75 Aligned_cols=25 Identities=36% Similarity=0.345 Sum_probs=20.6
Q ss_pred HHHHHhcCCCeeEEEecccCCCCcccc
Q 001693 93 VALAVVSGINSSVFAYGQTSSGKTYTM 119 (1027)
Q Consensus 93 lV~svL~G~NatIfAYGQTGSGKTyTM 119 (1027)
.+..+.+|.|+.|.| +||||||-+-
T Consensus 30 a~~~i~~G~nvLiiA--PTGsGKTeAA 54 (814)
T COG1201 30 AIPEIHSGENVLIIA--PTGSGKTEAA 54 (814)
T ss_pred HHHHHhCCCceEEEc--CCCCChHHHH
Confidence 345567999999988 9999999773
No 110
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=52.60 E-value=9.9 Score=44.49 Aligned_cols=68 Identities=18% Similarity=0.325 Sum_probs=45.2
Q ss_pred ecceeeCCCCChhhHHHhhHHHHHHH-Hhc--CCCe--eEEEecccCCCCccccc-----------------------CC
Q 001693 71 TFDRVFSCDCTTRKVYEEGAKEVALA-VVS--GINS--SVFAYGQTSSGKTYTMI-----------------------GI 122 (1027)
Q Consensus 71 ~FD~VF~~~asQeeVYe~~v~plV~s-vL~--G~Na--tIfAYGQTGSGKTyTM~-----------------------GI 122 (1027)
+|+-|=+-+..-++|.+.+..|+..- ++. |+.- .|+-||+.|+|||-.-- |=
T Consensus 149 tY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqKYiGE 228 (406)
T COG1222 149 TYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQKYIGE 228 (406)
T ss_pred ChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHHHhcc
Confidence 44545444444566777766666532 222 5543 48999999999986441 55
Q ss_pred hhhHHHHHHHHHHhcc
Q 001693 123 TEYTMSDIYDYIEKHK 138 (1027)
Q Consensus 123 i~rav~dLF~~Ie~~~ 138 (1027)
-+|.+++||.....+.
T Consensus 229 GaRlVRelF~lAreka 244 (406)
T COG1222 229 GARLVRELFELAREKA 244 (406)
T ss_pred chHHHHHHHHHHhhcC
Confidence 6789999999887654
No 111
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=52.53 E-value=4.9 Score=42.85 Aligned_cols=17 Identities=35% Similarity=0.401 Sum_probs=14.6
Q ss_pred eEEEecccCCCCccccc
Q 001693 104 SVFAYGQTSSGKTYTMI 120 (1027)
Q Consensus 104 tIfAYGQTGSGKTyTM~ 120 (1027)
.|+-.|+||+|||.|+.
T Consensus 3 vi~lvGptGvGKTTt~a 19 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIA 19 (196)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCchHhHHH
Confidence 46788999999999973
No 112
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=52.24 E-value=7.8 Score=51.53 Aligned_cols=36 Identities=28% Similarity=0.279 Sum_probs=24.1
Q ss_pred HHHHHHHHhcCCCeeEEEecccCCCCcccccCChhhH
Q 001693 90 AKEVALAVVSGINSSVFAYGQTSSGKTYTMIGITEYT 126 (1027)
Q Consensus 90 v~plV~svL~G~NatIfAYGQTGSGKTyTM~GIi~ra 126 (1027)
+..++..+..|....++ ..+||||||+||++++.+.
T Consensus 422 I~ai~~a~~~g~r~~Ll-~maTGSGKT~tai~li~~L 457 (1123)
T PRK11448 422 IQAVEKAIVEGQREILL-AMATGTGKTRTAIALMYRL 457 (1123)
T ss_pred HHHHHHHHHhccCCeEE-EeCCCCCHHHHHHHHHHHH
Confidence 34455555567665444 4899999999998765443
No 113
>PRK04406 hypothetical protein; Provisional
Probab=52.00 E-value=98 Score=28.55 Aligned_cols=50 Identities=14% Similarity=0.275 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001693 360 VKHLQRELSRLENELRGSGPVFITPDSVSVLREKDLRIEKLEKEVDELTMQRDLARTEVENLLRGA 425 (1027)
Q Consensus 360 ik~Lq~Ei~~Le~eL~~~~~~~~~~~~~~~l~ek~~~i~kle~ei~eL~~q~d~a~~~~~~l~~~~ 425 (1027)
+..+...|..|+..+.-. +.-|+.|.+.+-+.+.+++.++.++..|.+.+
T Consensus 6 ~~~le~Ri~~LE~~lAfQ----------------E~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl 55 (75)
T PRK04406 6 IEQLEERINDLECQLAFQ----------------EQTIEELNDALSQQQLLITKMQDQMKYVVGKV 55 (75)
T ss_pred HHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666777777665432 22344444444444444555555555444444
No 114
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=51.91 E-value=5.4 Score=37.87 Aligned_cols=16 Identities=25% Similarity=0.353 Sum_probs=13.8
Q ss_pred eEEEecccCCCCcccc
Q 001693 104 SVFAYGQTSSGKTYTM 119 (1027)
Q Consensus 104 tIfAYGQTGSGKTyTM 119 (1027)
.|+-.|.+|||||+..
T Consensus 1 vI~I~G~~gsGKST~a 16 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLA 16 (121)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred CEEEECCCCCCHHHHH
Confidence 4788999999999875
No 115
>PHA00729 NTP-binding motif containing protein
Probab=51.84 E-value=7.7 Score=42.64 Aligned_cols=36 Identities=25% Similarity=0.245 Sum_probs=26.1
Q ss_pred hHHHHHHHHhcCCCeeEEEecccCCCCcccccCChh
Q 001693 89 GAKEVALAVVSGINSSVFAYGQTSSGKTYTMIGITE 124 (1027)
Q Consensus 89 ~v~plV~svL~G~NatIfAYGQTGSGKTyTM~GIi~ 124 (1027)
.++.++..+..|--..|+.+|.+|+||||....+..
T Consensus 4 ~~k~~~~~l~~~~f~nIlItG~pGvGKT~LA~aLa~ 39 (226)
T PHA00729 4 LAKKIVSAYNNNGFVSAVIFGKQGSGKTTYALKVAR 39 (226)
T ss_pred HHHHHHHHHhcCCeEEEEEECCCCCCHHHHHHHHHH
Confidence 355666666654445799999999999998765443
No 116
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=51.72 E-value=17 Score=42.10 Aligned_cols=52 Identities=19% Similarity=0.324 Sum_probs=30.3
Q ss_pred eeecceeeCCCCChhhHHHhhHHHHHHH-Hhc--CC--CeeEEEecccCCCCccccc
Q 001693 69 SYTFDRVFSCDCTTRKVYEEGAKEVALA-VVS--GI--NSSVFAYGQTSSGKTYTMI 120 (1027)
Q Consensus 69 sF~FD~VF~~~asQeeVYe~~v~plV~s-vL~--G~--NatIfAYGQTGSGKTyTM~ 120 (1027)
.+.||.|.+-+..-+++.+.+..++... .+. |. ...|+-||++|+|||++..
T Consensus 118 ~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lak 174 (364)
T TIGR01242 118 NVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAK 174 (364)
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHH
Confidence 4566666665444444544444443321 121 22 3458899999999998863
No 117
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=51.67 E-value=11 Score=42.54 Aligned_cols=38 Identities=24% Similarity=0.397 Sum_probs=26.8
Q ss_pred CCeeEEEecccCCCCccccc-----------------------CChhhHHHHHHHHHHhcc
Q 001693 101 INSSVFAYGQTSSGKTYTMI-----------------------GITEYTMSDIYDYIEKHK 138 (1027)
Q Consensus 101 ~NatIfAYGQTGSGKTyTM~-----------------------GIi~rav~dLF~~Ie~~~ 138 (1027)
---.|+-||++|+|||++-- |--.+-+++||+...+..
T Consensus 150 APknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGehVGdgar~Ihely~rA~~~a 210 (368)
T COG1223 150 APKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEHVGDGARRIHELYERARKAA 210 (368)
T ss_pred CcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHHhhhHHHHHHHHHHHHHhcC
Confidence 34468889999999998762 334456777887766543
No 118
>cd01382 MYSc_type_VI Myosin motor domain, type VI myosins. Myosin VI is a monomeric myosin, which moves towards the minus-end of actin filaments, in contrast to most other myosins. It has been implicated in endocytosis, secretion, and cell migration. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the minus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of
Probab=51.03 E-value=65 Score=41.24 Aligned_cols=35 Identities=20% Similarity=0.302 Sum_probs=26.2
Q ss_pred hHHHhhHHHHHHHHh-cCCCeeEEEecccCCCCcccc
Q 001693 84 KVYEEGAKEVALAVV-SGINSSVFAYGQTSSGKTYTM 119 (1027)
Q Consensus 84 eVYe~~v~plV~svL-~G~NatIfAYGQTGSGKTyTM 119 (1027)
.||.- +......++ .|.|.||+.-|.+|||||.|.
T Consensus 73 Hifai-A~~Ay~~m~~~~~~QsIiisGESGaGKTes~ 108 (717)
T cd01382 73 HVFAI-ADKAYRDMKVLKMSQSIIVSGESGAGKTENT 108 (717)
T ss_pred cHHHH-HHHHHHHHHhcCCCCeEEEecCCCCChhHHH
Confidence 46654 333344443 699999999999999999986
No 119
>cd00124 MYSc Myosin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the fila
Probab=49.92 E-value=72 Score=40.47 Aligned_cols=36 Identities=22% Similarity=0.308 Sum_probs=27.2
Q ss_pred hhHHHhhHHHHHHHHh-cCCCeeEEEecccCCCCcccc
Q 001693 83 RKVYEEGAKEVALAVV-SGINSSVFAYGQTSSGKTYTM 119 (1027)
Q Consensus 83 eeVYe~~v~plV~svL-~G~NatIfAYGQTGSGKTyTM 119 (1027)
-.||.- +.....+++ .|.|.||+.-|.+|||||.+.
T Consensus 67 PHifav-A~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 103 (679)
T cd00124 67 PHVFAI-ADRAYRNMLRDRRNQSIIISGESGAGKTENT 103 (679)
T ss_pred CCHHHH-HHHHHHHHHhcCCCceEEEecCCCCCchHHH
Confidence 346664 444444544 599999999999999999985
No 120
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=49.55 E-value=5 Score=40.55 Aligned_cols=32 Identities=25% Similarity=0.419 Sum_probs=18.0
Q ss_pred hcCCCeeEEEecccCCCCcccccCChhhHHHHHHHHHHhc
Q 001693 98 VSGINSSVFAYGQTSSGKTYTMIGITEYTMSDIYDYIEKH 137 (1027)
Q Consensus 98 L~G~NatIfAYGQTGSGKTyTM~GIi~rav~dLF~~Ie~~ 137 (1027)
..|....++-+|..|+|||+.+ ..++..+...
T Consensus 20 ~~~~~~~~ll~G~~G~GKT~ll--------~~~~~~~~~~ 51 (185)
T PF13191_consen 20 QSGSPRNLLLTGESGSGKTSLL--------RALLDRLAER 51 (185)
T ss_dssp SS-----EEE-B-TTSSHHHHH--------HHHHHHHHHH
T ss_pred HcCCCcEEEEECCCCCCHHHHH--------HHHHHHHHhc
Confidence 3566778999999999999874 4455555544
No 121
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=49.15 E-value=11 Score=43.46 Aligned_cols=28 Identities=25% Similarity=0.228 Sum_probs=19.1
Q ss_pred HHHHHHhcCCCeeEEEecccCCCCccccc
Q 001693 92 EVALAVVSGINSSVFAYGQTSSGKTYTMI 120 (1027)
Q Consensus 92 plV~svL~G~NatIfAYGQTGSGKTyTM~ 120 (1027)
.++..++.+. ..|+-.|.||||||++|.
T Consensus 135 ~~L~~~v~~~-~nilI~G~tGSGKTTll~ 162 (323)
T PRK13833 135 SVIRSAIDSR-LNIVISGGTGSGKTTLAN 162 (323)
T ss_pred HHHHHHHHcC-CeEEEECCCCCCHHHHHH
Confidence 3444444432 347788999999999984
No 122
>PF03999 MAP65_ASE1: Microtubule associated protein (MAP65/ASE1 family); InterPro: IPR007145 This is a family of microtubule associated proteins. One of its members is the yeast anaphase spindle elongation protein.; PDB: 3NRX_A 3NRY_A.
Probab=49.01 E-value=11 Score=46.97 Aligned_cols=47 Identities=28% Similarity=0.473 Sum_probs=1.2
Q ss_pred HHHHHHHHHHHHhhcccceeeeeeeeeeecCCCCCceE--EEEEeehhh
Q 001693 852 FKRLQREIIELWHACNVSLVHRTYFFLLFKGDPKDSIY--MEVEQRRLS 898 (1027)
Q Consensus 852 f~~~~~~IieLW~~C~vslvHRtyFfLlfkgd~~D~iy--meve~rrl~ 898 (1027)
.++.|.+|-+||+.|++|--.|..|--.|-.+.++.+- +|.|+-||.
T Consensus 288 I~~~R~ei~elWd~~~~s~eer~~F~~~~~d~~~E~lL~~hE~Ei~~Lk 336 (619)
T PF03999_consen 288 IEKKRQEIEELWDKCHYSEEERQAFTPFYIDSYTEELLELHEEEIERLK 336 (619)
T ss_dssp -----------------------------------------------HH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHhcccchHHHHHHHHHHHHHHH
Confidence 47889999999999999999999988777666565543 899998874
No 123
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=48.99 E-value=26 Score=42.12 Aligned_cols=49 Identities=18% Similarity=0.313 Sum_probs=27.4
Q ss_pred ecceeeCCCCChhhHHHhhHHHHHHH-Hhc--CC--CeeEEEecccCCCCcccc
Q 001693 71 TFDRVFSCDCTTRKVYEEGAKEVALA-VVS--GI--NSSVFAYGQTSSGKTYTM 119 (1027)
Q Consensus 71 ~FD~VF~~~asQeeVYe~~v~plV~s-vL~--G~--NatIfAYGQTGSGKTyTM 119 (1027)
+|+.|.+-+..-+++.+.+..|+... ++. |. ...|+-||++|+|||++.
T Consensus 181 ~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LA 234 (438)
T PTZ00361 181 SYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLA 234 (438)
T ss_pred CHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHH
Confidence 45555444333344554444444322 111 22 234778999999999886
No 124
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=48.73 E-value=7 Score=45.55 Aligned_cols=44 Identities=20% Similarity=0.331 Sum_probs=32.0
Q ss_pred ceeecceeeCCCCChhhHHHhhHHHHHHHHhcCCCeeEEEecccCCCCcccc
Q 001693 68 TSYTFDRVFSCDCTTRKVYEEGAKEVALAVVSGINSSVFAYGQTSSGKTYTM 119 (1027)
Q Consensus 68 ~sF~FD~VF~~~asQeeVYe~~v~plV~svL~G~NatIfAYGQTGSGKTyTM 119 (1027)
..|.|+.|-+. + ..-.-++..+.+-.-+.|+.+|.+||||||.+
T Consensus 12 ~~~pf~~ivGq----~----~~k~al~~~~~~p~~~~vli~G~~GtGKs~~a 55 (350)
T CHL00081 12 PVFPFTAIVGQ----E----EMKLALILNVIDPKIGGVMIMGDRGTGKSTTI 55 (350)
T ss_pred CCCCHHHHhCh----H----HHHHHHHHhccCCCCCeEEEEcCCCCCHHHHH
Confidence 37999999883 2 34455566666544456889999999999986
No 125
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=48.70 E-value=24 Score=39.37 Aligned_cols=125 Identities=17% Similarity=0.277 Sum_probs=69.7
Q ss_pred eeecceeeCCCCChhhHHHhhHHHHHHHHhcCCCee-EEEecccCCCCcccccCChhhHHHHHHHHHHhccccceeEeee
Q 001693 69 SYTFDRVFSCDCTTRKVYEEGAKEVALAVVSGINSS-VFAYGQTSSGKTYTMIGITEYTMSDIYDYIEKHKEREFVLKFS 147 (1027)
Q Consensus 69 sF~FD~VF~~~asQeeVYe~~v~plV~svL~G~Nat-IfAYGQTGSGKTyTM~GIi~rav~dLF~~Ie~~~e~~f~V~vS 147 (1027)
...+|...+-+...+.+.+. ...++.|..+- ++.||..|+|||.++-++ ........ +-
T Consensus 23 ~~~l~~L~Gie~Qk~~l~~N-----t~~Fl~G~pannvLL~G~rGtGKSSlVkal--------l~~y~~~G-------LR 82 (249)
T PF05673_consen 23 PIRLDDLIGIERQKEALIEN-----TEQFLQGLPANNVLLWGARGTGKSSLVKAL--------LNEYADQG-------LR 82 (249)
T ss_pred CCCHHHhcCHHHHHHHHHHH-----HHHHHcCCCCcceEEecCCCCCHHHHHHHH--------HHHHhhcC-------ce
Confidence 45666666655444444444 25677777654 677999999999886442 22222211 55
Q ss_pred eeEeecccccccc------CCCCCCceeecCCCCCeEecCCeeEE-ecCHHHHHHHHHHhhhhhccccccCCCcCCCcee
Q 001693 148 AMEIYNESVRDLL------SADTSPLRLLDDPERGTIVEKLTEET-LKDWNHLKELLSTCEAQRQIGETSLNETSSRSHQ 220 (1027)
Q Consensus 148 ~lEIYnE~V~DLL------~~~~~~L~i~ed~~~g~~V~gLtev~-V~S~ee~~~LL~~g~~~R~~~sT~~N~~SSRSH~ 220 (1027)
.+||..+.+.||- .......- +++.+|+-.. =.++..+..+|.-|...| ....-+.++|.|-|.
T Consensus 83 lIev~k~~L~~l~~l~~~l~~~~~kFI--------lf~DDLsFe~~d~~yk~LKs~LeGgle~~-P~NvliyATSNRRHL 153 (249)
T PF05673_consen 83 LIEVSKEDLGDLPELLDLLRDRPYKFI--------LFCDDLSFEEGDTEYKALKSVLEGGLEAR-PDNVLIYATSNRRHL 153 (249)
T ss_pred EEEECHHHhccHHHHHHHHhcCCCCEE--------EEecCCCCCCCcHHHHHHHHHhcCccccC-CCcEEEEEecchhhc
Confidence 6888877665553 21111111 2233333111 123566777777666555 344556667777777
Q ss_pred EE
Q 001693 221 IL 222 (1027)
Q Consensus 221 If 222 (1027)
|=
T Consensus 154 v~ 155 (249)
T PF05673_consen 154 VP 155 (249)
T ss_pred cc
Confidence 63
No 126
>PRK02119 hypothetical protein; Provisional
Probab=48.45 E-value=1.2e+02 Score=27.80 Aligned_cols=15 Identities=20% Similarity=0.494 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHh
Q 001693 361 KHLQRELSRLENELR 375 (1027)
Q Consensus 361 k~Lq~Ei~~Le~eL~ 375 (1027)
..+...+..|+..+.
T Consensus 5 ~~~e~Ri~~LE~rla 19 (73)
T PRK02119 5 QNLENRIAELEMKIA 19 (73)
T ss_pred HHHHHHHHHHHHHHH
Confidence 445566666666553
No 127
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=48.26 E-value=12 Score=38.87 Aligned_cols=24 Identities=38% Similarity=0.441 Sum_probs=18.0
Q ss_pred HHHHHhcCCCeeEEEecccCCCCccc
Q 001693 93 VALAVVSGINSSVFAYGQTSSGKTYT 118 (1027)
Q Consensus 93 lV~svL~G~NatIfAYGQTGSGKTyT 118 (1027)
.+..++.|.| ++..++||+|||.+
T Consensus 29 ~~~~~~~~~~--~li~~~TG~GKT~~ 52 (203)
T cd00268 29 AIPPLLSGRD--VIGQAQTGSGKTAA 52 (203)
T ss_pred HHHHHhcCCc--EEEECCCCCcHHHH
Confidence 3445556887 56678999999987
No 128
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=48.18 E-value=10 Score=44.10 Aligned_cols=29 Identities=24% Similarity=0.198 Sum_probs=21.3
Q ss_pred HHHHHHHhcCCCeeEEEecccCCCCccccc
Q 001693 91 KEVALAVVSGINSSVFAYGQTSSGKTYTMI 120 (1027)
Q Consensus 91 ~plV~svL~G~NatIfAYGQTGSGKTyTM~ 120 (1027)
..++-.++.+. +.|+-.|.||||||+++-
T Consensus 163 a~~L~~av~~r-~NILisGGTGSGKTTlLN 191 (355)
T COG4962 163 AKFLRRAVGIR-CNILISGGTGSGKTTLLN 191 (355)
T ss_pred HHHHHHHHhhc-eeEEEeCCCCCCHHHHHH
Confidence 33444455555 778889999999999883
No 129
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=47.94 E-value=15 Score=43.53 Aligned_cols=19 Identities=32% Similarity=0.375 Sum_probs=16.5
Q ss_pred CeeEEEecccCCCCccccc
Q 001693 102 NSSVFAYGQTSSGKTYTMI 120 (1027)
Q Consensus 102 NatIfAYGQTGSGKTyTM~ 120 (1027)
...|+.+|+||+|||.|+.
T Consensus 174 ~~vi~lvGptGvGKTTT~a 192 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIA 192 (388)
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4578899999999999974
No 130
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=47.88 E-value=7.1 Score=43.83 Aligned_cols=21 Identities=29% Similarity=0.366 Sum_probs=16.5
Q ss_pred eEEEecccCCCCcccccCChh
Q 001693 104 SVFAYGQTSSGKTYTMIGITE 124 (1027)
Q Consensus 104 tIfAYGQTGSGKTyTM~GIi~ 124 (1027)
.|.-.|+||+|||+|+..+..
T Consensus 196 vi~~vGptGvGKTTt~~kLa~ 216 (282)
T TIGR03499 196 VIALVGPTGVGKTTTLAKLAA 216 (282)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 566679999999999865443
No 131
>PRK06547 hypothetical protein; Provisional
Probab=47.76 E-value=14 Score=38.70 Aligned_cols=30 Identities=27% Similarity=0.277 Sum_probs=21.0
Q ss_pred HHHHHHHHhcCCCeeEEEecccCCCCcccc
Q 001693 90 AKEVALAVVSGINSSVFAYGQTSSGKTYTM 119 (1027)
Q Consensus 90 v~plV~svL~G~NatIfAYGQTGSGKTyTM 119 (1027)
+..++..+..+.---|..+|.+|||||+..
T Consensus 3 ~~~~~~~~~~~~~~~i~i~G~~GsGKTt~a 32 (172)
T PRK06547 3 VALIAARLCGGGMITVLIDGRSGSGKTTLA 32 (172)
T ss_pred HHHHHHHhhcCCCEEEEEECCCCCCHHHHH
Confidence 344555555555556667799999999865
No 132
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=47.39 E-value=12 Score=39.16 Aligned_cols=29 Identities=24% Similarity=0.267 Sum_probs=19.3
Q ss_pred HHHHHHHhcCCCeeEEEecccCCCCccccc
Q 001693 91 KEVALAVVSGINSSVFAYGQTSSGKTYTMI 120 (1027)
Q Consensus 91 ~plV~svL~G~NatIfAYGQTGSGKTyTM~ 120 (1027)
.+++...+.. ...+.-.|+||||||.+|.
T Consensus 15 ~~~l~~~v~~-g~~i~I~G~tGSGKTTll~ 43 (186)
T cd01130 15 AAYLWLAVEA-RKNILISGGTGSGKTTLLN 43 (186)
T ss_pred HHHHHHHHhC-CCEEEEECCCCCCHHHHHH
Confidence 3344444443 3456778999999999873
No 133
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=47.10 E-value=14 Score=44.58 Aligned_cols=51 Identities=24% Similarity=0.257 Sum_probs=29.6
Q ss_pred eeecceeeCCCCChhhHHHhhHHHHHHH-Hhc--C--CCeeEEEecccCCCCccccc
Q 001693 69 SYTFDRVFSCDCTTRKVYEEGAKEVALA-VVS--G--INSSVFAYGQTSSGKTYTMI 120 (1027)
Q Consensus 69 sF~FD~VF~~~asQeeVYe~~v~plV~s-vL~--G--~NatIfAYGQTGSGKTyTM~ 120 (1027)
..+||.|.+.+...+++.+ .+..+-.. .+. | ..-.|+-||++|+|||+...
T Consensus 51 ~~~~~di~g~~~~k~~l~~-~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~ 106 (495)
T TIGR01241 51 KVTFKDVAGIDEAKEELME-IVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAK 106 (495)
T ss_pred CCCHHHhCCHHHHHHHHHH-HHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHH
Confidence 5688888876544444432 22221100 111 2 22358889999999999874
No 134
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=46.84 E-value=1.4e+02 Score=27.48 Aligned_cols=52 Identities=21% Similarity=0.229 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 001693 359 LVKHLQRELSRLENELRGSGPVFITPDSVSVLREKDLRIEKLEKEVDELTMQRDLARTEVENLLRGAG 426 (1027)
Q Consensus 359 lik~Lq~Ei~~Le~eL~~~~~~~~~~~~~~~l~ek~~~i~kle~ei~eL~~q~d~a~~~~~~l~~~~~ 426 (1027)
.|..|+.++..|+.+-.. ...+...|+.++..|+.++...+.++..|+..+.
T Consensus 19 ti~~Lq~e~eeLke~n~~----------------L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~kl~ 70 (72)
T PF06005_consen 19 TIALLQMENEELKEKNNE----------------LKEENEELKEENEQLKQERNAWQERLRSLLGKLE 70 (72)
T ss_dssp HHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 466677777777765321 1255777888888898888888888888887664
No 135
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=46.65 E-value=21 Score=43.83 Aligned_cols=33 Identities=30% Similarity=0.563 Sum_probs=26.9
Q ss_pred eEEEecccCCCCccccc------------CChhhHHHHHHHHHHh
Q 001693 104 SVFAYGQTSSGKTYTMI------------GITEYTMSDIYDYIEK 136 (1027)
Q Consensus 104 tIfAYGQTGSGKTyTM~------------GIi~rav~dLF~~Ie~ 136 (1027)
.||..|+|.|||||--. |-.-....++|+....
T Consensus 193 Ii~H~GPTNSGKTy~ALqrl~~aksGvycGPLrLLA~EV~~r~na 237 (700)
T KOG0953|consen 193 IIMHVGPTNSGKTYRALQRLKSAKSGVYCGPLRLLAHEVYDRLNA 237 (700)
T ss_pred EEEEeCCCCCchhHHHHHHHhhhccceecchHHHHHHHHHHHhhh
Confidence 48999999999999874 5556677889988865
No 136
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=46.47 E-value=12 Score=44.56 Aligned_cols=26 Identities=35% Similarity=0.473 Sum_probs=19.5
Q ss_pred HHHHHHhcCCCeeEEEecccCCCCcccc
Q 001693 92 EVALAVVSGINSSVFAYGQTSSGKTYTM 119 (1027)
Q Consensus 92 plV~svL~G~NatIfAYGQTGSGKTyTM 119 (1027)
..+..+++|.| +++.++||||||.+.
T Consensus 33 ~ai~~~l~g~d--vi~~a~TGsGKT~a~ 58 (460)
T PRK11776 33 QSLPAILAGKD--VIAQAKTGSGKTAAF 58 (460)
T ss_pred HHHHHHhcCCC--EEEECCCCCcHHHHH
Confidence 34455678988 677789999999663
No 137
>PTZ00424 helicase 45; Provisional
Probab=46.37 E-value=11 Score=43.60 Aligned_cols=27 Identities=22% Similarity=0.391 Sum_probs=20.3
Q ss_pred HHHHHHHhcCCCeeEEEecccCCCCcccc
Q 001693 91 KEVALAVVSGINSSVFAYGQTSSGKTYTM 119 (1027)
Q Consensus 91 ~plV~svL~G~NatIfAYGQTGSGKTyTM 119 (1027)
...+..+++|.|. +..++||||||.+.
T Consensus 56 ~~ai~~i~~~~d~--ii~apTGsGKT~~~ 82 (401)
T PTZ00424 56 QRGIKPILDGYDT--IGQAQSGTGKTATF 82 (401)
T ss_pred HHHHHHHhCCCCE--EEECCCCChHHHHH
Confidence 3455667889985 45689999999765
No 138
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=46.24 E-value=8.1 Score=42.30 Aligned_cols=21 Identities=24% Similarity=0.401 Sum_probs=16.2
Q ss_pred CCCeeEEEecccCCCCccccc
Q 001693 100 GINSSVFAYGQTSSGKTYTMI 120 (1027)
Q Consensus 100 G~NatIfAYGQTGSGKTyTM~ 120 (1027)
-.++.++..|..|||||+||.
T Consensus 11 ~~~~~~lV~a~AGSGKT~~l~ 31 (315)
T PF00580_consen 11 STEGPLLVNAGAGSGKTTTLL 31 (315)
T ss_dssp S-SSEEEEEE-TTSSHHHHHH
T ss_pred CCCCCEEEEeCCCCCchHHHH
Confidence 367788888999999999984
No 139
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=45.81 E-value=6.6 Score=37.43 Aligned_cols=26 Identities=23% Similarity=0.377 Sum_probs=18.0
Q ss_pred EEEecccCCCCcccccCChhhHHHHHHHHH
Q 001693 105 VFAYGQTSSGKTYTMIGITEYTMSDIYDYI 134 (1027)
Q Consensus 105 IfAYGQTGSGKTyTM~GIi~rav~dLF~~I 134 (1027)
|+-||++|.|||+.+. ..+.+|.+.+
T Consensus 1 I~i~G~~G~GKS~l~~----~l~~~l~~~~ 26 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAK----ELAKDLLKHI 26 (107)
T ss_pred CEEECCCCCCHHHHHH----HHHHHHHHHh
Confidence 5789999999998863 3344444444
No 140
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=45.81 E-value=41 Score=33.67 Aligned_cols=35 Identities=26% Similarity=0.362 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 001693 394 DLRIEKLEKEVDELTMQRDLARTEVENLLRGAGKG 428 (1027)
Q Consensus 394 ~~~i~kle~ei~eL~~q~d~a~~~~~~l~~~~~~~ 428 (1027)
..+.+...+++..|+.+...++.+.+.++..+|+-
T Consensus 60 ~e~~~~~~~~~~~L~~el~~l~~ry~t~LellGEK 94 (120)
T PF12325_consen 60 NEELRALKKEVEELEQELEELQQRYQTLLELLGEK 94 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 34455566777888888888888888888888763
No 141
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=45.62 E-value=41 Score=37.90 Aligned_cols=113 Identities=19% Similarity=0.272 Sum_probs=64.3
Q ss_pred CCCeEEEEEeCCCChhhhhcCCCcce---------Eee---CCCEEEecCCcccccCCcCCceeecceeeCCCCChhhHH
Q 001693 19 PERIFVSVRLRPLNEKEIARNDVSDW---------ECI---NDSTIIYRNNLSVAERSMYPTSYTFDRVFSCDCTTRKVY 86 (1027)
Q Consensus 19 ~e~I~V~VRVRPl~~~E~~~~~~~~~---------~~~---~~~tii~~~~~~~~~rs~~~~sF~FD~VF~~~asQeeVY 86 (1027)
...-.-+||+-...++|+.....++. .+. .+.+|..-.+ .+ .-.-++-.|=+-+..-++|-
T Consensus 96 ttgsny~vrilstidrellkps~svalhrhsnalvdvlppeadssi~ml~~---~e----kpdvsy~diggld~qkqeir 168 (408)
T KOG0727|consen 96 TTGSNYYVRILSTIDRELLKPSASVALHRHSNALVDVLPPEADSSISMLGP---DE----KPDVSYADIGGLDVQKQEIR 168 (408)
T ss_pred ccCCceEEeehhhhhHHHcCCccchhhhhcccceeeccCCcccccccccCC---CC----CCCccccccccchhhHHHHH
Confidence 33456789999988888765332211 111 0111111111 01 11233444445455556677
Q ss_pred HhhHHHHHHHHhc---CCC--eeEEEecccCCCCcccc-----------------------cCChhhHHHHHHHHHHhcc
Q 001693 87 EEGAKEVALAVVS---GIN--SSVFAYGQTSSGKTYTM-----------------------IGITEYTMSDIYDYIEKHK 138 (1027)
Q Consensus 87 e~~v~plV~svL~---G~N--atIfAYGQTGSGKTyTM-----------------------~GIi~rav~dLF~~Ie~~~ 138 (1027)
+.+-.|+...-+- |++ -.|+.||+.|+|||-.. .|--||.++|+|....++.
T Consensus 169 eavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefvqkylgegprmvrdvfrlakena 248 (408)
T KOG0727|consen 169 EAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENA 248 (408)
T ss_pred HHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHHHhccCcHHHHHHHHHHhccC
Confidence 7666666655442 444 35899999999997433 1666899999998776544
No 142
>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. The globular head is well conserved, some highly-conserved regions possibly relating to functional and structural domains []. The rod-like tail starts with an invariant proline residue, and contains many repeats of a 28 residue region, interrupted at 4 regularly-spaced points known as skip residues. Although the sequence of the tail is not well conserved, the chemical character is, hydrophobic, charged and skip residues occuring in a highly ordered and repeated fashion [].; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 1LKX_A 2V26_A 2BKI_A 3L9I_A 2BKH_A 2X51_A 2VB6_A 2VAS_A 1OE9_A 1W8J_A ....
Probab=45.20 E-value=13 Score=46.88 Aligned_cols=35 Identities=23% Similarity=0.322 Sum_probs=26.2
Q ss_pred hHHHhhHHHHHHHH-hcCCCeeEEEecccCCCCcccc
Q 001693 84 KVYEEGAKEVALAV-VSGINSSVFAYGQTSSGKTYTM 119 (1027)
Q Consensus 84 eVYe~~v~plV~sv-L~G~NatIfAYGQTGSGKTyTM 119 (1027)
.||.-+ ......+ ..|.|-||+..|.+|||||.++
T Consensus 67 Hif~~a-~~A~~~m~~~~~~Q~IiisGeSGsGKTe~~ 102 (689)
T PF00063_consen 67 HIFAVA-QRAYRQMLRTRQNQSIIISGESGSGKTETS 102 (689)
T ss_dssp SHHHHH-HHHHHHHHHHTSEEEEEEEESTTSSHHHHH
T ss_pred ccchhh-hcccccccccccccceeeccccccccccch
Confidence 477653 3333333 4699999999999999999985
No 143
>PRK13764 ATPase; Provisional
Probab=44.65 E-value=9.1 Score=47.63 Aligned_cols=22 Identities=14% Similarity=0.188 Sum_probs=17.5
Q ss_pred CCCeeEEEecccCCCCcccccC
Q 001693 100 GINSSVFAYGQTSSGKTYTMIG 121 (1027)
Q Consensus 100 G~NatIfAYGQTGSGKTyTM~G 121 (1027)
.....|+..|+||||||+++..
T Consensus 255 ~~~~~ILIsG~TGSGKTTll~A 276 (602)
T PRK13764 255 ERAEGILIAGAPGAGKSTFAQA 276 (602)
T ss_pred hcCCEEEEECCCCCCHHHHHHH
Confidence 3344589999999999999854
No 144
>PF06048 DUF927: Domain of unknown function (DUF927); InterPro: IPR009270 This entry is represented by Bacteriophage PT1028, Orf1. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=44.50 E-value=17 Score=40.80 Aligned_cols=33 Identities=27% Similarity=0.281 Sum_probs=24.6
Q ss_pred HhhHHHHHHHHhcCCCeeEEEecccCCCCccccc
Q 001693 87 EEGAKEVALAVVSGINSSVFAYGQTSSGKTYTMI 120 (1027)
Q Consensus 87 e~~v~plV~svL~G~NatIfAYGQTGSGKTyTM~ 120 (1027)
...+.|++ ..+.--+..|-.||+|++|||.++.
T Consensus 179 ~afa~pLL-~~l~~~~~~~hl~G~Ss~GKTt~~~ 211 (286)
T PF06048_consen 179 AAFAAPLL-SLLGVEGFGFHLYGQSSSGKTTALQ 211 (286)
T ss_pred HHHHHHHH-HHhCCCceEEEEEeCCCCCHHHHHH
Confidence 33455555 5556667788899999999999884
No 145
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=43.86 E-value=15 Score=39.87 Aligned_cols=19 Identities=32% Similarity=0.471 Sum_probs=13.5
Q ss_pred CCeeEEEecccCCCCcccc
Q 001693 101 INSSVFAYGQTSSGKTYTM 119 (1027)
Q Consensus 101 ~NatIfAYGQTGSGKTyTM 119 (1027)
.+-.+++.|+.||||||.-
T Consensus 18 ~~~~v~~~G~AGTGKT~LA 36 (205)
T PF02562_consen 18 NNDLVIVNGPAGTGKTFLA 36 (205)
T ss_dssp H-SEEEEE--TTSSTTHHH
T ss_pred hCCeEEEECCCCCcHHHHH
Confidence 4558999999999999864
No 146
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=43.59 E-value=13 Score=42.88 Aligned_cols=28 Identities=29% Similarity=0.215 Sum_probs=18.9
Q ss_pred HHHHHHhcCCCeeEEEecccCCCCccccc
Q 001693 92 EVALAVVSGINSSVFAYGQTSSGKTYTMI 120 (1027)
Q Consensus 92 plV~svL~G~NatIfAYGQTGSGKTyTM~ 120 (1027)
.++..++.+. ..|+..|.||||||.+|.
T Consensus 151 ~~L~~~v~~~-~nili~G~tgSGKTTll~ 178 (332)
T PRK13900 151 EFLEHAVISK-KNIIISGGTSTGKTTFTN 178 (332)
T ss_pred HHHHHHHHcC-CcEEEECCCCCCHHHHHH
Confidence 3444444432 347778999999999873
No 147
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=43.49 E-value=29 Score=44.12 Aligned_cols=52 Identities=21% Similarity=0.303 Sum_probs=30.2
Q ss_pred ceeecceeeCCCCChhhHHHhhHHHHHH-HHhc--CC--CeeEEEecccCCCCcccc
Q 001693 68 TSYTFDRVFSCDCTTRKVYEEGAKEVAL-AVVS--GI--NSSVFAYGQTSSGKTYTM 119 (1027)
Q Consensus 68 ~sF~FD~VF~~~asQeeVYe~~v~plV~-svL~--G~--NatIfAYGQTGSGKTyTM 119 (1027)
..++||.|-+.+..-+.+.+.+..++-. .++. |. ...|+-||++|+|||+.+
T Consensus 173 ~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~la 229 (733)
T TIGR01243 173 PKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLA 229 (733)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHH
Confidence 3577888776444444444443333221 1222 22 246889999999999875
No 148
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=43.39 E-value=20 Score=41.15 Aligned_cols=69 Identities=16% Similarity=0.346 Sum_probs=46.7
Q ss_pred ecceeeCCCCChhhHHHhhHHHH-HHHHhcCCC---eeEEEecccCCCCcccc-----------c------------CCh
Q 001693 71 TFDRVFSCDCTTRKVYEEGAKEV-ALAVVSGIN---SSVFAYGQTSSGKTYTM-----------I------------GIT 123 (1027)
Q Consensus 71 ~FD~VF~~~asQeeVYe~~v~pl-V~svL~G~N---atIfAYGQTGSGKTyTM-----------~------------GIi 123 (1027)
..+-|-+-+..-+.+-+.+..|+ ..++|.|.- ..|+.||+.|+||+|.- | |--
T Consensus 131 kWsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSKWmGES 210 (439)
T KOG0739|consen 131 KWSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGES 210 (439)
T ss_pred chhhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHHHhccH
Confidence 34445554444444555544444 345666653 67999999999999965 2 667
Q ss_pred hhHHHHHHHHHHhccc
Q 001693 124 EYTMSDIYDYIEKHKE 139 (1027)
Q Consensus 124 ~rav~dLF~~Ie~~~e 139 (1027)
...+..||+...+++.
T Consensus 211 EkLVknLFemARe~kP 226 (439)
T KOG0739|consen 211 EKLVKNLFEMARENKP 226 (439)
T ss_pred HHHHHHHHHHHHhcCC
Confidence 7889999998887664
No 149
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=43.21 E-value=36 Score=38.40 Aligned_cols=40 Identities=13% Similarity=0.091 Sum_probs=23.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 001693 387 VSVLREKDLRIEKLEKEVDELTMQRDLARTEVENLLRGAG 426 (1027)
Q Consensus 387 ~~~l~ek~~~i~kle~ei~eL~~q~d~a~~~~~~l~~~~~ 426 (1027)
.....+.+.+|.+++.+|++|+.+++.+..+|......+.
T Consensus 65 ~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~ 104 (265)
T COG3883 65 QSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLK 104 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455566666666666666666666666655444443
No 150
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=42.92 E-value=16 Score=45.96 Aligned_cols=36 Identities=19% Similarity=0.208 Sum_probs=24.5
Q ss_pred hHHHHHHHHhc-----CCCeeEEEecccCCCCcccccCChhh
Q 001693 89 GAKEVALAVVS-----GINSSVFAYGQTSSGKTYTMIGITEY 125 (1027)
Q Consensus 89 ~v~plV~svL~-----G~NatIfAYGQTGSGKTyTM~GIi~r 125 (1027)
++..++..+.. |.+..|+.. .||||||+||..++..
T Consensus 246 av~~~~~~~~~~~~~~~~~~gli~~-~TGsGKT~t~~~la~~ 286 (667)
T TIGR00348 246 AVKKIVESITRKTWGKDERGGLIWH-TQGSGKTLTMLFAARK 286 (667)
T ss_pred HHHHHHHHHHhcccCCCCceeEEEE-ecCCCccHHHHHHHHH
Confidence 46667777766 344555444 8999999999765443
No 151
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=42.86 E-value=8.9 Score=37.33 Aligned_cols=15 Identities=27% Similarity=0.421 Sum_probs=13.2
Q ss_pred EEEecccCCCCcccc
Q 001693 105 VFAYGQTSSGKTYTM 119 (1027)
Q Consensus 105 IfAYGQTGSGKTyTM 119 (1027)
|+..|.+|||||+..
T Consensus 2 ii~~G~pgsGKSt~a 16 (143)
T PF13671_consen 2 IILCGPPGSGKSTLA 16 (143)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 788999999999864
No 152
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=42.76 E-value=93 Score=35.85 Aligned_cols=66 Identities=21% Similarity=0.300 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 001693 356 DKALVKHLQRELSRLENELRGSGPVFITPDSVSVLREKDLRIEKLEKEVDELTMQRDLARTEVENLLRGAGKGSA 430 (1027)
Q Consensus 356 ~kalik~Lq~Ei~~Le~eL~~~~~~~~~~~~~~~l~ek~~~i~kle~ei~eL~~q~d~a~~~~~~l~~~~~~~~~ 430 (1027)
+...+..++.++..+..++... ...+.+...+.+.++.+++++..++..+++++.++.+...+..+
T Consensus 207 D~~eL~~lr~eL~~~~~~i~~~---------k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~~r~ 272 (325)
T PF08317_consen 207 DQEELEALRQELAEQKEEIEAK---------KKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIREECRG 272 (325)
T ss_pred CHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3445666666666666665433 23455666677777777888888888888888887777765553
No 153
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=42.52 E-value=16 Score=41.33 Aligned_cols=39 Identities=26% Similarity=0.523 Sum_probs=28.6
Q ss_pred CCCe--eEEEecccCCCCccccc-----------------------CChhhHHHHHHHHHHhcc
Q 001693 100 GINS--SVFAYGQTSSGKTYTMI-----------------------GITEYTMSDIYDYIEKHK 138 (1027)
Q Consensus 100 G~Na--tIfAYGQTGSGKTyTM~-----------------------GIi~rav~dLF~~Ie~~~ 138 (1027)
|+.- .|+.||+.|+|||..-. |--.|.+++||++....+
T Consensus 207 gidppkgvllygppgtgktl~aravanrtdacfirvigselvqkyvgegarmvrelf~martkk 270 (435)
T KOG0729|consen 207 GIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKK 270 (435)
T ss_pred CCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHHHHHHhhhhHHHHHHHHHHhcccc
Confidence 5543 48999999999998763 333577889998776543
No 154
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=42.38 E-value=14 Score=43.43 Aligned_cols=26 Identities=27% Similarity=0.395 Sum_probs=20.3
Q ss_pred HHHHHHhcCCCeeEEEecccCCCCcccc
Q 001693 92 EVALAVVSGINSSVFAYGQTSSGKTYTM 119 (1027)
Q Consensus 92 plV~svL~G~NatIfAYGQTGSGKTyTM 119 (1027)
..+..+++|.| +++.++||||||.+.
T Consensus 30 ~ai~~~~~g~d--~l~~apTGsGKT~~~ 55 (434)
T PRK11192 30 EAIPPALDGRD--VLGSAPTGTGKTAAF 55 (434)
T ss_pred HHHHHHhCCCC--EEEECCCCChHHHHH
Confidence 34556678887 788899999999874
No 155
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=42.01 E-value=35 Score=40.07 Aligned_cols=106 Identities=18% Similarity=0.334 Sum_probs=56.6
Q ss_pred cCCCeeEEEecccCCCCcccccCChhhHHHHHHHH-HHhc----------cccceeEeeeeeEeeccccccccCCCCCCc
Q 001693 99 SGINSSVFAYGQTSSGKTYTMIGITEYTMSDIYDY-IEKH----------KEREFVLKFSAMEIYNESVRDLLSADTSPL 167 (1027)
Q Consensus 99 ~G~NatIfAYGQTGSGKTyTM~GIi~rav~dLF~~-Ie~~----------~e~~f~V~vS~lEIYnE~V~DLL~~~~~~L 167 (1027)
.|+.-+|+..|+.|+|||.-+ +.||.. +... ......|..+..+|-.+ ...-.+
T Consensus 20 ~Gi~f~im~~G~sG~GKttfi--------NtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~-------~~~~~l 84 (373)
T COG5019 20 KGIDFTIMVVGESGLGKTTFI--------NTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEED-------GFHLNL 84 (373)
T ss_pred cCCceEEEEecCCCCchhHHH--------HhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecC-------CeEEEE
Confidence 699999999999999999754 333332 1110 01223344444444332 111245
Q ss_pred eeecCCCCCeEecCCeeEEecCHHHHHHHHHHhhhhhccccccCC----CcCCCceeEEEE
Q 001693 168 RLLDDPERGTIVEKLTEETLKDWNHLKELLSTCEAQRQIGETSLN----ETSSRSHQILRL 224 (1027)
Q Consensus 168 ~i~ed~~~g~~V~gLtev~V~S~ee~~~LL~~g~~~R~~~sT~~N----~~SSRSH~IftI 224 (1027)
-+.+.|.-|-.|.+ -.+|+-+..+|..-...--....... -.=.|=|+.+-+
T Consensus 85 ~vIDtpGfGD~idN-----s~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYF 140 (373)
T COG5019 85 TVIDTPGFGDFIDN-----SKCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYF 140 (373)
T ss_pred EEeccCCccccccc-----cccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEE
Confidence 56777777777766 24566677776544333211111111 112577877654
No 156
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=41.87 E-value=10 Score=44.16 Aligned_cols=28 Identities=32% Similarity=0.332 Sum_probs=18.9
Q ss_pred HHHHHHhcCCCeeEEEecccCCCCccccc
Q 001693 92 EVALAVVSGINSSVFAYGQTSSGKTYTMI 120 (1027)
Q Consensus 92 plV~svL~G~NatIfAYGQTGSGKTyTM~ 120 (1027)
.++..++.+ ...|+..|.||||||++|.
T Consensus 153 ~~l~~~v~~-~~nilI~G~tGSGKTTll~ 180 (344)
T PRK13851 153 AFLHACVVG-RLTMLLCGPTGSGKTTMSK 180 (344)
T ss_pred HHHHHHHHc-CCeEEEECCCCccHHHHHH
Confidence 344444432 3347778999999999984
No 157
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=41.65 E-value=8.5 Score=37.66 Aligned_cols=15 Identities=33% Similarity=0.443 Sum_probs=13.3
Q ss_pred EEEecccCCCCcccc
Q 001693 105 VFAYGQTSSGKTYTM 119 (1027)
Q Consensus 105 IfAYGQTGSGKTyTM 119 (1027)
|+-+|++|+|||+.+
T Consensus 2 vlL~G~~G~GKt~l~ 16 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLA 16 (139)
T ss_dssp EEEEESSSSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 688999999999875
No 158
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=41.63 E-value=21 Score=45.66 Aligned_cols=42 Identities=19% Similarity=0.230 Sum_probs=25.5
Q ss_pred ecceeeCCCCChhhHHHhhHHHHHHHHhcCC-CeeEEEecccCCCCccccc
Q 001693 71 TFDRVFSCDCTTRKVYEEGAKEVALAVVSGI-NSSVFAYGQTSSGKTYTMI 120 (1027)
Q Consensus 71 ~FD~VF~~~asQeeVYe~~v~plV~svL~G~-NatIfAYGQTGSGKTyTM~ 120 (1027)
+||.|.+ |+.|-+ .|...+-.|. .-.++-||..|+|||.+..
T Consensus 14 tFdEVIG----Qe~Vv~----~L~~aL~~gRL~HAyLFtGPpGvGKTTlAr 56 (830)
T PRK07003 14 DFASLVG----QEHVVR----ALTHALDGGRLHHAYLFTGTRGVGKTTLSR 56 (830)
T ss_pred cHHHHcC----cHHHHH----HHHHHHhcCCCCeEEEEECCCCCCHHHHHH
Confidence 5777776 333322 2332333333 4567889999999998763
No 159
>PRK00295 hypothetical protein; Provisional
Probab=41.57 E-value=1.7e+02 Score=26.42 Aligned_cols=30 Identities=10% Similarity=0.139 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001693 392 EKDLRIEKLEKEVDELTMQRDLARTEVENL 421 (1027)
Q Consensus 392 ek~~~i~kle~ei~eL~~q~d~a~~~~~~l 421 (1027)
+.+..+-+..++|..|+.++..+..++..+
T Consensus 23 ~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~ 52 (68)
T PRK00295 23 ALNDVLVEQQRVIERLQLQMAALIKRQEEM 52 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444445555555555555555555443
No 160
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=41.56 E-value=98 Score=30.33 Aligned_cols=65 Identities=23% Similarity=0.276 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 001693 361 KHLQRELSRLENELRGSGPVFITPDSVSVLREKDLRIEKLEKEVDELTMQRDLARTEVENLLRGAGK 427 (1027)
Q Consensus 361 k~Lq~Ei~~Le~eL~~~~~~~~~~~~~~~l~ek~~~i~kle~ei~eL~~q~d~a~~~~~~l~~~~~~ 427 (1027)
..|+.++.-|+.-+-..... ..+....|+.++..|.+++.|+.-|...++.+..+++.|...+..
T Consensus 8 sKLraQ~~vLKKaVieEQ~k--~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~~ 72 (102)
T PF10205_consen 8 SKLRAQNQVLKKAVIEEQAK--NAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELEE 72 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555433221111 223456788888899999999999999999999999988888774
No 161
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=41.45 E-value=1.6e+02 Score=34.99 Aligned_cols=45 Identities=13% Similarity=0.203 Sum_probs=26.6
Q ss_pred hHHHHHHHHHHhcCCCCCccccCCchhhhhhhhccCCCccceeeeecC
Q 001693 275 SLLTLGTVIRKLSKGRNGHVPFRDSKLTRILQSSLGGNARTAIICTLS 322 (1027)
Q Consensus 275 SL~aLg~VI~aLs~~k~~hIPYRDSKLTrLLqdSLGGNskT~mIatIS 322 (1027)
-|..+-.++..-+.. .++.+|+---=+-|.+.||.+++ ++||.+.
T Consensus 195 ~l~~F~~l~~~T~~R--~~f~~r~~~Yf~~l~~~f~d~a~-~~~A~l~ 239 (406)
T PF02388_consen 195 ELDDFYDLYKETAER--KGFSIRSLEYFENLYDAFGDKAK-FFLAELN 239 (406)
T ss_dssp HHHHHHHHHHHHHHH--TT-----HHHHHHHHHHCCCCEE-EEEEEEC
T ss_pred HHHHHHHHHHHHHhh--CCCcccCHHHHHHHHHhcCCCeE-EEEEEEc
Confidence 466777777766653 25667776666667777777755 7788875
No 162
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=41.24 E-value=9.8 Score=35.94 Aligned_cols=16 Identities=31% Similarity=0.202 Sum_probs=13.4
Q ss_pred EEEecccCCCCccccc
Q 001693 105 VFAYGQTSSGKTYTMI 120 (1027)
Q Consensus 105 IfAYGQTGSGKTyTM~ 120 (1027)
|+-.|.+|||||+...
T Consensus 1 I~i~G~~GsGKtTia~ 16 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAK 16 (129)
T ss_dssp EEEEESTTSSHHHHHH
T ss_pred CEEECCCCCCHHHHHH
Confidence 6778999999998763
No 163
>PRK11637 AmiB activator; Provisional
Probab=41.17 E-value=1.3e+02 Score=35.92 Aligned_cols=40 Identities=18% Similarity=0.234 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 001693 389 VLREKDLRIEKLEKEVDELTMQRDLARTEVENLLRGAGKG 428 (1027)
Q Consensus 389 ~l~ek~~~i~kle~ei~eL~~q~d~a~~~~~~l~~~~~~~ 428 (1027)
.+...+.+|..++++|.+++.+++..+..+..+.+.+.++
T Consensus 97 ~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rlra~Y~~ 136 (428)
T PRK11637 97 TLNQLNKQIDELNASIAKLEQQQAAQERLLAAQLDAAFRQ 136 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3444445555555555555555555555566556555554
No 164
>PRK02793 phi X174 lysis protein; Provisional
Probab=41.14 E-value=1.6e+02 Score=26.93 Aligned_cols=31 Identities=23% Similarity=0.191 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 001693 397 IEKLEKEVDELTMQRDLARTEVENLLRGAGK 427 (1027)
Q Consensus 397 i~kle~ei~eL~~q~d~a~~~~~~l~~~~~~ 427 (1027)
|+.|.+.+-+.+.+++.++.++..|...+..
T Consensus 24 Ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~ 54 (72)
T PRK02793 24 IEELNVTVTAHEMEMAKLRDHLRLLTEKLKA 54 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444444444455555555555555444443
No 165
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=41.06 E-value=11 Score=45.61 Aligned_cols=22 Identities=36% Similarity=0.570 Sum_probs=17.4
Q ss_pred HhcCCCeeEEEecccCCCCccccc
Q 001693 97 VVSGINSSVFAYGQTSSGKTYTMI 120 (1027)
Q Consensus 97 vL~G~NatIfAYGQTGSGKTyTM~ 120 (1027)
+.+|.+ ++|++|||||||+...
T Consensus 108 i~~Grd--l~acAqTGsGKT~aFL 129 (482)
T KOG0335|consen 108 ISGGRD--LMACAQTGSGKTAAFL 129 (482)
T ss_pred eecCCc--eEEEccCCCcchHHHH
Confidence 345555 4899999999999985
No 166
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=40.75 E-value=96 Score=27.68 Aligned_cols=31 Identities=29% Similarity=0.379 Sum_probs=21.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001693 386 SVSVLREKDLRIEKLEKEVDELTMQRDLART 416 (1027)
Q Consensus 386 ~~~~l~ek~~~i~kle~ei~eL~~q~d~a~~ 416 (1027)
....|++.+.++..|+.+|+.|+.+++.+++
T Consensus 30 ~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r~ 60 (61)
T PF08826_consen 30 FESKLQEAEKRNRELEQEIERLKKEMEELRS 60 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3556777777777777777777777776654
No 167
>PLN03025 replication factor C subunit; Provisional
Probab=40.75 E-value=19 Score=40.98 Aligned_cols=23 Identities=22% Similarity=0.458 Sum_probs=17.1
Q ss_pred CCCeeEEEecccCCCCcccccCC
Q 001693 100 GINSSVFAYGQTSSGKTYTMIGI 122 (1027)
Q Consensus 100 G~NatIfAYGQTGSGKTyTM~GI 122 (1027)
|.-..++-||+.|+|||++...+
T Consensus 32 ~~~~~lll~Gp~G~GKTtla~~l 54 (319)
T PLN03025 32 GNMPNLILSGPPGTGKTTSILAL 54 (319)
T ss_pred CCCceEEEECCCCCCHHHHHHHH
Confidence 43334667999999999998553
No 168
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=40.59 E-value=58 Score=40.47 Aligned_cols=35 Identities=31% Similarity=0.478 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001693 390 LREKDLRIEKLEKEVDELTMQRDLARTEVENLLRG 424 (1027)
Q Consensus 390 l~ek~~~i~kle~ei~eL~~q~d~a~~~~~~l~~~ 424 (1027)
++.++.+|..|++++.+-.+..+.+..++..+.++
T Consensus 476 i~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~k~ 510 (652)
T COG2433 476 IRARDRRIERLEKELEEKKKRVEELERKLAELRKM 510 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455566666666666666666666666665543
No 169
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=40.28 E-value=18 Score=45.71 Aligned_cols=38 Identities=24% Similarity=0.529 Sum_probs=29.4
Q ss_pred CCeeEEEecccCCCCccccc-----------------------CChhhHHHHHHHHHHhcc
Q 001693 101 INSSVFAYGQTSSGKTYTMI-----------------------GITEYTMSDIYDYIEKHK 138 (1027)
Q Consensus 101 ~NatIfAYGQTGSGKTyTM~-----------------------GIi~rav~dLF~~Ie~~~ 138 (1027)
.-+.|+-||+.|+||||... |--+..+++||.+....+
T Consensus 700 ~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~KyIGaSEq~vR~lF~rA~~a~ 760 (952)
T KOG0735|consen 700 LRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKYIGASEQNVRDLFERAQSAK 760 (952)
T ss_pred cccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHHhcccHHHHHHHHHHhhccC
Confidence 34569999999999999773 556678889998776543
No 170
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=40.11 E-value=16 Score=43.03 Aligned_cols=26 Identities=27% Similarity=0.305 Sum_probs=19.5
Q ss_pred HHHHHHhcCCCeeEEEecccCCCCcccc
Q 001693 92 EVALAVVSGINSSVFAYGQTSSGKTYTM 119 (1027)
Q Consensus 92 plV~svL~G~NatIfAYGQTGSGKTyTM 119 (1027)
..+..++.|.| |++-++||||||.+.
T Consensus 37 ~aip~il~g~d--vi~~ApTGsGKTla~ 62 (423)
T PRK04837 37 LALPLTLAGRD--VAGQAQTGTGKTMAF 62 (423)
T ss_pred HHHHHHhCCCc--EEEECCCCchHHHHH
Confidence 34556788988 455679999999864
No 171
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=40.11 E-value=17 Score=44.57 Aligned_cols=30 Identities=23% Similarity=0.308 Sum_probs=22.8
Q ss_pred HHHHHHHHhcCCC--eeEEEecccCCCCcccc
Q 001693 90 AKEVALAVVSGIN--SSVFAYGQTSSGKTYTM 119 (1027)
Q Consensus 90 v~plV~svL~G~N--atIfAYGQTGSGKTyTM 119 (1027)
++..+...+.|.. ..++.+|++|+|||.|+
T Consensus 31 V~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv 62 (519)
T PF03215_consen 31 VRSWLEEMFSGSSPKRILLLTGPSGCGKTTTV 62 (519)
T ss_pred HHHHHHHHhccCCCcceEEEECCCCCCHHHHH
Confidence 5556666665553 46788999999999987
No 172
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=39.93 E-value=41 Score=42.82 Aligned_cols=23 Identities=22% Similarity=0.411 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCC
Q 001693 358 ALVKHLQRELSRLENELRGSGPV 380 (1027)
Q Consensus 358 alik~Lq~Ei~~Le~eL~~~~~~ 380 (1027)
..+..|..++++|+.||...+..
T Consensus 418 ~a~~rLE~dvkkLraeLq~~Rq~ 440 (697)
T PF09726_consen 418 DAISRLEADVKKLRAELQSSRQS 440 (697)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhh
Confidence 45678999999999888765533
No 173
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=39.89 E-value=13 Score=39.29 Aligned_cols=19 Identities=26% Similarity=0.298 Sum_probs=14.2
Q ss_pred CCeeEEEecccCCCCcccc
Q 001693 101 INSSVFAYGQTSSGKTYTM 119 (1027)
Q Consensus 101 ~NatIfAYGQTGSGKTyTM 119 (1027)
.-..+|..||.|||||+.+
T Consensus 14 ~P~~~i~aG~~GsGKSt~~ 32 (199)
T PF06414_consen 14 KPTLIIIAGQPGSGKSTLA 32 (199)
T ss_dssp S-EEEEEES-TTSTTHHHH
T ss_pred CCEEEEEeCCCCCCHHHHH
Confidence 3456888999999999876
No 174
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=39.89 E-value=10 Score=44.84 Aligned_cols=22 Identities=23% Similarity=0.366 Sum_probs=16.7
Q ss_pred CeeEEEecccCCCCcccccCCh
Q 001693 102 NSSVFAYGQTSSGKTYTMIGIT 123 (1027)
Q Consensus 102 NatIfAYGQTGSGKTyTM~GIi 123 (1027)
+--++.+|.||||||..|..++
T Consensus 42 ~~h~~i~g~tGsGKt~~i~~l~ 63 (410)
T cd01127 42 EAHTMIIGTTGTGKTTQIRELL 63 (410)
T ss_pred hccEEEEcCCCCCHHHHHHHHH
Confidence 3467889999999998754443
No 175
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=39.53 E-value=1.1e+02 Score=27.56 Aligned_cols=31 Identities=26% Similarity=0.217 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 001693 397 IEKLEKEVDELTMQRDLARTEVENLLRGAGK 427 (1027)
Q Consensus 397 i~kle~ei~eL~~q~d~a~~~~~~l~~~~~~ 427 (1027)
|+.|.+.+.+.+.+++.++.++..|...+..
T Consensus 20 ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~ 50 (69)
T PF04102_consen 20 IEELNDVVTEQQRQIDRLQRQLRLLRERLRE 50 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444555555555555555444444
No 176
>PRK11637 AmiB activator; Provisional
Probab=39.51 E-value=83 Score=37.46 Aligned_cols=39 Identities=23% Similarity=0.240 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 001693 389 VLREKDLRIEKLEKEVDELTMQRDLARTEVENLLRGAGK 427 (1027)
Q Consensus 389 ~l~ek~~~i~kle~ei~eL~~q~d~a~~~~~~l~~~~~~ 427 (1027)
.+...+.+|..++.+|.+++.+++.++.++..+...+.+
T Consensus 90 ~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~ 128 (428)
T PRK11637 90 KLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAA 128 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555556666666666666666666555555544
No 177
>PRK04325 hypothetical protein; Provisional
Probab=39.50 E-value=1.7e+02 Score=26.83 Aligned_cols=50 Identities=14% Similarity=0.247 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001693 362 HLQRELSRLENELRGSGPVFITPDSVSVLREKDLRIEKLEKEVDELTMQRDLARTEVEN 420 (1027)
Q Consensus 362 ~Lq~Ei~~Le~eL~~~~~~~~~~~~~~~l~ek~~~i~kle~ei~eL~~q~d~a~~~~~~ 420 (1027)
.+...|..|+..+.-. ...+.+.+..+-+..++|..|+.++..+..++..
T Consensus 6 ~~e~Ri~~LE~klAfQ---------E~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~ 55 (74)
T PRK04325 6 EMEDRITELEIQLAFQ---------EDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRD 55 (74)
T ss_pred hHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666554332 1222233333444444444444444444444433
No 178
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=39.48 E-value=30 Score=35.89 Aligned_cols=18 Identities=33% Similarity=0.517 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHhcC
Q 001693 360 VKHLQRELSRLENELRGS 377 (1027)
Q Consensus 360 ik~Lq~Ei~~Le~eL~~~ 377 (1027)
+..|+.++..|+.+|...
T Consensus 88 l~~l~~~~k~l~~eL~~L 105 (169)
T PF07106_consen 88 LAELKKEVKSLEAELASL 105 (169)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444555555555555544
No 179
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=39.41 E-value=1.5e+02 Score=32.80 Aligned_cols=96 Identities=14% Similarity=0.112 Sum_probs=57.9
Q ss_pred ccceeeeecCCCCcchHHHHHHHHHHHHhhcccccceecccc-----CHHHHHHHHHHHHHHHHHHHhcCCCCCCCcchh
Q 001693 313 ARTAIICTLSPARSHVEQSRNTLLFASCAKEVTTNAQVNIVM-----SDKALVKHLQRELSRLENELRGSGPVFITPDSV 387 (1027)
Q Consensus 313 skT~mIatISPs~~~~eETlsTLrFAsRAK~Ikn~~~vN~~~-----s~kalik~Lq~Ei~~Le~eL~~~~~~~~~~~~~ 387 (1027)
....|.+-|.+ ..+++-+..|. ..-.|...-..-..+ +..+.++.++++..+|++-|.....
T Consensus 94 ~~~~ltiRVP~--~~~~~~l~~l~---~~g~v~~~~~~~~DvT~~y~D~~arl~~l~~~~~rl~~ll~ka~~-------- 160 (262)
T PF14257_consen 94 RSASLTIRVPA--DKFDSFLDELS---ELGKVTSRNISSEDVTEQYVDLEARLKNLEAEEERLLELLEKAKT-------- 160 (262)
T ss_pred ceEEEEEEECH--HHHHHHHHHHh---ccCceeeeeccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--------
Confidence 33444455544 56777777776 222333332222222 2234567777777777777664431
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 001693 388 SVLREKDLRIEKLEKEVDELTMQRDLARTEVENLLRGAGK 427 (1027)
Q Consensus 388 ~~l~ek~~~i~kle~ei~eL~~q~d~a~~~~~~l~~~~~~ 427 (1027)
-..+-++|.+|.+++.++|.++.++..|...+.=
T Consensus 161 ------~~d~l~ie~~L~~v~~eIe~~~~~~~~l~~~v~~ 194 (262)
T PF14257_consen 161 ------VEDLLEIERELSRVRSEIEQLEGQLKYLDDRVDY 194 (262)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhce
Confidence 1235667888888888888888888888776543
No 180
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=38.78 E-value=12 Score=39.02 Aligned_cols=17 Identities=29% Similarity=0.329 Sum_probs=14.5
Q ss_pred eeEEEecccCCCCcccc
Q 001693 103 SSVFAYGQTSSGKTYTM 119 (1027)
Q Consensus 103 atIfAYGQTGSGKTyTM 119 (1027)
+.++-+|+||+|||++.
T Consensus 4 ~~~ll~GpsGvGKT~la 20 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELA 20 (171)
T ss_dssp EEEEEESSTTSSHHHHH
T ss_pred EEEEEECCCCCCHHHHH
Confidence 46888999999999954
No 181
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=38.78 E-value=19 Score=42.99 Aligned_cols=26 Identities=35% Similarity=0.450 Sum_probs=20.2
Q ss_pred HHHHHHhcCCCeeEEEecccCCCCcccc
Q 001693 92 EVALAVVSGINSSVFAYGQTSSGKTYTM 119 (1027)
Q Consensus 92 plV~svL~G~NatIfAYGQTGSGKTyTM 119 (1027)
..+..+++|.| |++..+||||||.+.
T Consensus 30 ~ai~~il~g~d--vlv~apTGsGKTla~ 55 (456)
T PRK10590 30 QAIPAVLEGRD--LMASAQTGTGKTAGF 55 (456)
T ss_pred HHHHHHhCCCC--EEEECCCCCcHHHHH
Confidence 34556778987 677789999999874
No 182
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=38.60 E-value=22 Score=39.52 Aligned_cols=22 Identities=18% Similarity=0.231 Sum_probs=17.2
Q ss_pred cCCCeeEEEecccCCCCccccc
Q 001693 99 SGINSSVFAYGQTSSGKTYTMI 120 (1027)
Q Consensus 99 ~G~NatIfAYGQTGSGKTyTM~ 120 (1027)
.|....++-||+.|+|||+++.
T Consensus 35 ~~~~~~~ll~G~~G~GKt~~~~ 56 (319)
T PRK00440 35 EKNMPHLLFAGPPGTGKTTAAL 56 (319)
T ss_pred CCCCCeEEEECCCCCCHHHHHH
Confidence 4544457889999999998863
No 183
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=38.19 E-value=17 Score=45.55 Aligned_cols=22 Identities=23% Similarity=0.371 Sum_probs=17.3
Q ss_pred eEEEecccCCCCcccccCChhh
Q 001693 104 SVFAYGQTSSGKTYTMIGITEY 125 (1027)
Q Consensus 104 tIfAYGQTGSGKTyTM~GIi~r 125 (1027)
.++..|+.|||||||+..++-.
T Consensus 175 ~~lI~GpPGTGKT~t~~~ii~~ 196 (637)
T TIGR00376 175 LFLIHGPPGTGKTRTLVELIRQ 196 (637)
T ss_pred eEEEEcCCCCCHHHHHHHHHHH
Confidence 4568999999999998665433
No 184
>PF07795 DUF1635: Protein of unknown function (DUF1635); InterPro: IPR012862 The members of this family include sequences that are parts of hypothetical proteins expressed by plant species. The region in question is about 170 amino acids long.
Probab=37.76 E-value=1e+02 Score=33.90 Aligned_cols=36 Identities=28% Similarity=0.430 Sum_probs=31.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001693 387 VSVLREKDLRIEKLEKEVDELTMQRDLARTEVENLL 422 (1027)
Q Consensus 387 ~~~l~ek~~~i~kle~ei~eL~~q~d~a~~~~~~l~ 422 (1027)
...++.++.+|..|.+-++...++||.|+.+++.|.
T Consensus 25 ~EElRk~eeqi~~L~~Ll~~a~~ERDEAr~qlq~Ll 60 (214)
T PF07795_consen 25 NEELRKREEQIAHLKDLLKKAYQERDEAREQLQKLL 60 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677788899999999999999999999999988
No 185
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=37.74 E-value=19 Score=41.09 Aligned_cols=26 Identities=23% Similarity=0.245 Sum_probs=20.9
Q ss_pred hcCCCeeEEEecccCCCCcccccCCh
Q 001693 98 VSGINSSVFAYGQTSSGKTYTMIGIT 123 (1027)
Q Consensus 98 L~G~NatIfAYGQTGSGKTyTM~GIi 123 (1027)
-..-+.-++-||+.|||||.+|.-++
T Consensus 19 ~~~~~~r~vL~G~~GsGKS~~L~q~~ 44 (309)
T PF10236_consen 19 KSSKNNRYVLTGERGSGKSVLLAQAV 44 (309)
T ss_pred ccCCceEEEEECCCCCCHHHHHHHHH
Confidence 35677789999999999999985433
No 186
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=37.59 E-value=23 Score=41.15 Aligned_cols=41 Identities=17% Similarity=0.316 Sum_probs=25.9
Q ss_pred ecceeeCCCCChhhHHHhhHHHHHHHHhcC-CCeeEEEecccCCCCcccc
Q 001693 71 TFDRVFSCDCTTRKVYEEGAKEVALAVVSG-INSSVFAYGQTSSGKTYTM 119 (1027)
Q Consensus 71 ~FD~VF~~~asQeeVYe~~v~plV~svL~G-~NatIfAYGQTGSGKTyTM 119 (1027)
+||.|.+ |+.+- +.+...+..| ..-+++-||+.|+|||++.
T Consensus 14 ~~~~iiG----q~~~~----~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla 55 (363)
T PRK14961 14 YFRDIIG----QKHIV----TAISNGLSLGRIHHAWLLSGTRGVGKTTIA 55 (363)
T ss_pred chhhccC----hHHHH----HHHHHHHHcCCCCeEEEEecCCCCCHHHHH
Confidence 5666665 33333 3333333444 4556789999999999876
No 187
>PF05729 NACHT: NACHT domain
Probab=37.45 E-value=13 Score=36.54 Aligned_cols=17 Identities=24% Similarity=0.417 Sum_probs=14.6
Q ss_pred eEEEecccCCCCccccc
Q 001693 104 SVFAYGQTSSGKTYTMI 120 (1027)
Q Consensus 104 tIfAYGQTGSGKTyTM~ 120 (1027)
.++-+|..|+|||..|.
T Consensus 2 ~l~I~G~~G~GKStll~ 18 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLR 18 (166)
T ss_pred EEEEECCCCCChHHHHH
Confidence 46789999999999874
No 188
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=37.42 E-value=24 Score=42.03 Aligned_cols=37 Identities=22% Similarity=0.428 Sum_probs=24.2
Q ss_pred hHHHhhHHHHHHHHhcCC----CeeEEEecccCCCCccccc
Q 001693 84 KVYEEGAKEVALAVVSGI----NSSVFAYGQTSSGKTYTMI 120 (1027)
Q Consensus 84 eVYe~~v~plV~svL~G~----NatIfAYGQTGSGKTyTM~ 120 (1027)
..|......+..++.+-. ..-|.-.|+||.|||+|+-
T Consensus 181 ~~~~~~l~~~~~~~~~~~~~~~~~vi~LVGPTGVGKTTTlA 221 (407)
T COG1419 181 RYFSEKLRKLLLSLIENLIVEQKRVIALVGPTGVGKTTTLA 221 (407)
T ss_pred hhHHHHHHHHHHhhccccccccCcEEEEECCCCCcHHHHHH
Confidence 344444444444444442 5667778999999999984
No 189
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=37.31 E-value=16 Score=36.96 Aligned_cols=24 Identities=21% Similarity=0.385 Sum_probs=16.4
Q ss_pred EEEecccCCCCcccccCChhhHHHHHHH
Q 001693 105 VFAYGQTSSGKTYTMIGITEYTMSDIYD 132 (1027)
Q Consensus 105 IfAYGQTGSGKTyTM~GIi~rav~dLF~ 132 (1027)
+--.|.||+||||+- ..+.+.||.
T Consensus 56 lSfHG~tGtGKn~v~----~liA~~ly~ 79 (127)
T PF06309_consen 56 LSFHGWTGTGKNFVS----RLIAEHLYK 79 (127)
T ss_pred EEeecCCCCcHHHHH----HHHHHHHHh
Confidence 335699999999974 334455554
No 190
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=37.18 E-value=21 Score=45.56 Aligned_cols=23 Identities=26% Similarity=0.234 Sum_probs=18.3
Q ss_pred cCCCeeEEEecccCCCCcccccC
Q 001693 99 SGINSSVFAYGQTSSGKTYTMIG 121 (1027)
Q Consensus 99 ~G~NatIfAYGQTGSGKTyTM~G 121 (1027)
.|.-..++-||++|+|||++...
T Consensus 49 ~~~~~slLL~GPpGtGKTTLA~a 71 (725)
T PRK13341 49 ADRVGSLILYGPPGVGKTTLARI 71 (725)
T ss_pred cCCCceEEEECCCCCCHHHHHHH
Confidence 45555788899999999988743
No 191
>smart00242 MYSc Myosin. Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin.
Probab=37.05 E-value=28 Score=44.03 Aligned_cols=37 Identities=19% Similarity=0.234 Sum_probs=26.6
Q ss_pred hhHHHhhHHHHHHHHhcCCCeeEEEecccCCCCcccc
Q 001693 83 RKVYEEGAKEVALAVVSGINSSVFAYGQTSSGKTYTM 119 (1027)
Q Consensus 83 eeVYe~~v~plV~svL~G~NatIfAYGQTGSGKTyTM 119 (1027)
-.||.-+....-.-+-.|.|.||+.-|.+|||||.|.
T Consensus 73 PHifavA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 109 (677)
T smart00242 73 PHVFAIADNAYRNMLNDKENQSIIISGESGAGKTENT 109 (677)
T ss_pred CCHHHHHHHHHHHHHhcCCCceEEEecCCCCcchHHH
Confidence 3567653333333333699999999999999999986
No 192
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=36.56 E-value=16 Score=40.26 Aligned_cols=19 Identities=21% Similarity=0.183 Sum_probs=15.6
Q ss_pred CeeEEEecccCCCCccccc
Q 001693 102 NSSVFAYGQTSSGKTYTMI 120 (1027)
Q Consensus 102 NatIfAYGQTGSGKTyTM~ 120 (1027)
...++-||++|+|||++..
T Consensus 42 ~~~vll~GppGtGKTtlA~ 60 (261)
T TIGR02881 42 VLHMIFKGNPGTGKTTVAR 60 (261)
T ss_pred cceEEEEcCCCCCHHHHHH
Confidence 3457889999999999864
No 193
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=36.36 E-value=23 Score=42.80 Aligned_cols=26 Identities=15% Similarity=0.065 Sum_probs=18.8
Q ss_pred cCCCccceeeeecCCCCcchHHHHHHHHHH
Q 001693 309 LGGNARTAIICTLSPARSHVEQSRNTLLFA 338 (1027)
Q Consensus 309 LGGNskT~mIatISPs~~~~eETlsTLrFA 338 (1027)
+.-..+..||||++.+... +..|.+|
T Consensus 320 f~iP~Nl~IIgTMNt~Drs----~~~lD~A 345 (459)
T PRK11331 320 FYVPENVYIIGLMNTADRS----LAVVDYA 345 (459)
T ss_pred ccCCCCeEEEEecCccccc----hhhccHH
Confidence 4557889999999988754 3455555
No 194
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=36.08 E-value=15 Score=43.25 Aligned_cols=22 Identities=27% Similarity=0.279 Sum_probs=17.6
Q ss_pred CeeEEEecccCCCCcccccCCh
Q 001693 102 NSSVFAYGQTSSGKTYTMIGIT 123 (1027)
Q Consensus 102 NatIfAYGQTGSGKTyTM~GIi 123 (1027)
...++-+|+||+|||+|+..+.
T Consensus 137 g~ii~lvGptGvGKTTtiakLA 158 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLA 158 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4567789999999999985443
No 195
>PRK00736 hypothetical protein; Provisional
Probab=35.87 E-value=2.2e+02 Score=25.71 Aligned_cols=29 Identities=14% Similarity=0.113 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001693 392 EKDLRIEKLEKEVDELTMQRDLARTEVEN 420 (1027)
Q Consensus 392 ek~~~i~kle~ei~eL~~q~d~a~~~~~~ 420 (1027)
+.+..+-+..++|..|+.++..+..++..
T Consensus 23 ~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~ 51 (68)
T PRK00736 23 ELSDQLAEQWKTVEQMRKKLDALTERFLS 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444445555555555555444443
No 196
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=35.68 E-value=54 Score=36.63 Aligned_cols=54 Identities=24% Similarity=0.292 Sum_probs=34.3
Q ss_pred HHHHHHHHhc---CCCeeEEEecccCCCCcccccCChhhHHHHHHHHHHhc-cccceeEeeeeeEe
Q 001693 90 AKEVALAVVS---GINSSVFAYGQTSSGKTYTMIGITEYTMSDIYDYIEKH-KEREFVLKFSAMEI 151 (1027)
Q Consensus 90 v~plV~svL~---G~NatIfAYGQTGSGKTyTM~GIi~rav~dLF~~Ie~~-~e~~f~V~vS~lEI 151 (1027)
+..+.+-+.+ .-+.+|.-||+=|||||+.| +.+.+.++.. ...-+.|.++.+..
T Consensus 5 a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l--------~~l~~~L~~~~~~~~~~i~fn~w~~ 62 (325)
T PF07693_consen 5 AKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFL--------NMLKEELKEDNKEKYIFIYFNAWEY 62 (325)
T ss_pred HHHHHHHHhccCCCCCeEEEEECCCCCCHHHHH--------HHHHHHHhcccccceeeEEEccccC
Confidence 4444443333 56788999999999999865 5555566554 33445566665554
No 197
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=35.19 E-value=18 Score=43.01 Aligned_cols=43 Identities=28% Similarity=0.402 Sum_probs=29.2
Q ss_pred ecceeeCCCCChhhHHHhhHHHHHHHHhcCCCeeEEEecccCCCCccc
Q 001693 71 TFDRVFSCDCTTRKVYEEGAKEVALAVVSGINSSVFAYGQTSSGKTYT 118 (1027)
Q Consensus 71 ~FD~VF~~~asQeeVYe~~v~plV~svL~G~NatIfAYGQTGSGKTyT 118 (1027)
+||.|++ |+.+... .+++-.-+-.|.=.+.+-||+.|+|||..
T Consensus 22 ~lde~vG----Q~HLlg~-~~~lrr~v~~~~l~SmIl~GPPG~GKTTl 64 (436)
T COG2256 22 SLDEVVG----QEHLLGE-GKPLRRAVEAGHLHSMILWGPPGTGKTTL 64 (436)
T ss_pred CHHHhcC----hHhhhCC-CchHHHHHhcCCCceeEEECCCCCCHHHH
Confidence 4555555 5555544 44444445567778888999999999964
No 198
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=35.14 E-value=2.3e+02 Score=27.58 Aligned_cols=43 Identities=23% Similarity=0.278 Sum_probs=28.7
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 001693 384 PDSVSVLREKDLRIEKLEKEVDELTMQRDLARTEVENLLRGAG 426 (1027)
Q Consensus 384 ~~~~~~l~ek~~~i~kle~ei~eL~~q~d~a~~~~~~l~~~~~ 426 (1027)
.+...+......+++.++..++.+..+.+.++.++.++.+.+.
T Consensus 63 ~~~~e~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~ 105 (110)
T TIGR02338 63 TDKEEAIQELKEKKETLELRVKTLQRQEERLREQLKELQEKIQ 105 (110)
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455556666777777777777777777777777666553
No 199
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=34.99 E-value=1.4e+02 Score=37.02 Aligned_cols=63 Identities=21% Similarity=0.247 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 001693 359 LVKHLQRELSRLENELRGSGPVFITPDSVSVLREKDLRIEKLEKEVDELTMQRDLARTEVENLLRGAGK 427 (1027)
Q Consensus 359 lik~Lq~Ei~~Le~eL~~~~~~~~~~~~~~~l~ek~~~i~kle~ei~eL~~q~d~a~~~~~~l~~~~~~ 427 (1027)
.++.|+.++..|+..++.++-. .+..+..+.+.+++.+++..++.++|.++.++.++...+..
T Consensus 309 E~e~lq~~~d~Lk~~Ie~Q~iS------~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~vw~~~l~~~~ 371 (581)
T KOG0995|consen 309 EIEKLQKENDELKKQIELQGIS------GEDVERMNLERNKLKRELNKIQSELDRLSKEVWELKLEIED 371 (581)
T ss_pred HHHHHHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 4677888888888888777532 45566677778888888888888888888777666654444
No 200
>PRK04195 replication factor C large subunit; Provisional
Probab=34.92 E-value=18 Score=43.64 Aligned_cols=30 Identities=23% Similarity=0.340 Sum_probs=21.4
Q ss_pred HHHHHHHHhcCC-CeeEEEecccCCCCcccc
Q 001693 90 AKEVALAVVSGI-NSSVFAYGQTSSGKTYTM 119 (1027)
Q Consensus 90 v~plV~svL~G~-NatIfAYGQTGSGKTyTM 119 (1027)
...++.....|. ...++-||++|+|||++.
T Consensus 26 l~~~l~~~~~g~~~~~lLL~GppG~GKTtla 56 (482)
T PRK04195 26 LREWIESWLKGKPKKALLLYGPPGVGKTSLA 56 (482)
T ss_pred HHHHHHHHhcCCCCCeEEEECCCCCCHHHHH
Confidence 344444444554 557888999999999886
No 201
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=34.85 E-value=22 Score=47.04 Aligned_cols=24 Identities=25% Similarity=0.326 Sum_probs=18.0
Q ss_pred eeEEEecccCCCCcccc-------cCChhhH
Q 001693 103 SSVFAYGQTSSGKTYTM-------IGITEYT 126 (1027)
Q Consensus 103 atIfAYGQTGSGKTyTM-------~GIi~ra 126 (1027)
+.+.-+|+||||||..+ +|-.|+.
T Consensus 27 gl~~I~G~nGaGKSTildAI~~aL~G~~~~~ 57 (1042)
T TIGR00618 27 PIFLICGKTGAGKTTLLDAITYALYGKLPRR 57 (1042)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcCCCCCC
Confidence 45567899999998776 4766653
No 202
>CHL00176 ftsH cell division protein; Validated
Probab=34.52 E-value=24 Score=44.43 Aligned_cols=18 Identities=28% Similarity=0.375 Sum_probs=15.6
Q ss_pred eeEEEecccCCCCccccc
Q 001693 103 SSVFAYGQTSSGKTYTMI 120 (1027)
Q Consensus 103 atIfAYGQTGSGKTyTM~ 120 (1027)
..|+-||++|+|||+...
T Consensus 217 ~gVLL~GPpGTGKT~LAr 234 (638)
T CHL00176 217 KGVLLVGPPGTGKTLLAK 234 (638)
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 358999999999999874
No 203
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=34.50 E-value=3e+02 Score=30.46 Aligned_cols=35 Identities=20% Similarity=0.270 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 001693 394 DLRIEKLEKEVDELTMQRDLARTEVENLLRGAGKG 428 (1027)
Q Consensus 394 ~~~i~kle~ei~eL~~q~d~a~~~~~~l~~~~~~~ 428 (1027)
+.+...|+++.+++..+-|.+-++.++|...+..+
T Consensus 178 ~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~~~ 212 (216)
T KOG1962|consen 178 QKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIESG 212 (216)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcc
Confidence 33444455566666666666666666666665443
No 204
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=33.48 E-value=16 Score=35.53 Aligned_cols=18 Identities=33% Similarity=0.645 Sum_probs=14.4
Q ss_pred EEEecccCCCCcccccCC
Q 001693 105 VFAYGQTSSGKTYTMIGI 122 (1027)
Q Consensus 105 IfAYGQTGSGKTyTM~GI 122 (1027)
++-||.+|+|||+.+..+
T Consensus 2 ~~i~G~~G~GKT~l~~~i 19 (165)
T cd01120 2 ILVFGPTGSGKTTLALQL 19 (165)
T ss_pred eeEeCCCCCCHHHHHHHH
Confidence 467999999999987543
No 205
>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new act
Probab=33.37 E-value=36 Score=43.10 Aligned_cols=35 Identities=29% Similarity=0.441 Sum_probs=25.8
Q ss_pred hHHHhhHHHHHHHHh-cCCCeeEEEecccCCCCcccc
Q 001693 84 KVYEEGAKEVALAVV-SGINSSVFAYGQTSSGKTYTM 119 (1027)
Q Consensus 84 eVYe~~v~plV~svL-~G~NatIfAYGQTGSGKTyTM 119 (1027)
.||.- +.....+++ .|.|.||+.-|.+|||||.|.
T Consensus 70 Hifai-A~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 105 (674)
T cd01384 70 HVFAI-ADAAYRAMINEGKSQSILVSGESGAGKTETT 105 (674)
T ss_pred CHHHH-HHHHHHHHHHcCCCceEEEECCCCCCchhHH
Confidence 46654 333333333 599999999999999999986
No 206
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=33.28 E-value=27 Score=41.85 Aligned_cols=27 Identities=33% Similarity=0.363 Sum_probs=20.1
Q ss_pred HHHHHHHhcCCCeeEEEecccCCCCcccc
Q 001693 91 KEVALAVVSGINSSVFAYGQTSSGKTYTM 119 (1027)
Q Consensus 91 ~plV~svL~G~NatIfAYGQTGSGKTyTM 119 (1027)
...+..++.|.++ ++..+||||||.+.
T Consensus 17 ~~ai~~~l~g~dv--lv~apTGsGKTl~y 43 (470)
T TIGR00614 17 LEVINAVLLGRDC--FVVMPTGGGKSLCY 43 (470)
T ss_pred HHHHHHHHcCCCE--EEEcCCCCcHhHHH
Confidence 3456667889974 55679999999764
No 207
>PRK13342 recombination factor protein RarA; Reviewed
Probab=33.01 E-value=22 Score=41.99 Aligned_cols=45 Identities=24% Similarity=0.330 Sum_probs=26.6
Q ss_pred ecceeeCCCCChhhHHHhhHHHHHHHHhcCCCeeEEEecccCCCCccccc
Q 001693 71 TFDRVFSCDCTTRKVYEEGAKEVALAVVSGINSSVFAYGQTSSGKTYTMI 120 (1027)
Q Consensus 71 ~FD~VF~~~asQeeVYe~~v~plV~svL~G~NatIfAYGQTGSGKTyTM~ 120 (1027)
+||.+.+ |+.+... ...+...+-.+.-..++-||++|+|||+...
T Consensus 10 ~l~d~vG----q~~~v~~-~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~ 54 (413)
T PRK13342 10 TLDEVVG----QEHLLGP-GKPLRRMIEAGRLSSMILWGPPGTGKTTLAR 54 (413)
T ss_pred CHHHhcC----cHHHhCc-chHHHHHHHcCCCceEEEECCCCCCHHHHHH
Confidence 3555554 3444432 2233333345555577779999999998763
No 208
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=32.87 E-value=15 Score=42.42 Aligned_cols=42 Identities=21% Similarity=0.377 Sum_probs=26.6
Q ss_pred HHHHHHHHHhcCCCCCccccCCchhhhhhhhccC---CCcc-ceeeeecCCCC
Q 001693 277 LTLGTVIRKLSKGRNGHVPFRDSKLTRILQSSLG---GNAR-TAIICTLSPAR 325 (1027)
Q Consensus 277 ~aLg~VI~aLs~~k~~hIPYRDSKLTrLLqdSLG---GNsk-T~mIatISPs~ 325 (1027)
..|.+.|..-+.|-. +.||-||+|.+. -|++ -.+|-+--|-.
T Consensus 274 ~QlsRFin~yt~glp-------~~i~~LLKdif~~~~~n~~ysWiiYnt~P~~ 319 (369)
T PF02456_consen 274 SQLSRFINNYTKGLP-------TAISLLLKDIFNHHQQNSKYSWIIYNTDPVS 319 (369)
T ss_pred HHHHHHHHHhccCCC-------hhHHHHHHHHHHHHHhcCCccEEEecCCCCc
Confidence 467888888776633 467888888874 3443 44454555544
No 209
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=32.87 E-value=20 Score=42.42 Aligned_cols=37 Identities=22% Similarity=0.428 Sum_probs=26.0
Q ss_pred eEEEecccCCCCcccccCChhhHHHHHHHHHHhccccceeEeeeeeEeec
Q 001693 104 SVFAYGQTSSGKTYTMIGITEYTMSDIYDYIEKHKEREFVLKFSAMEIYN 153 (1027)
Q Consensus 104 tIfAYGQTGSGKTyTM~GIi~rav~dLF~~Ie~~~e~~f~V~vS~lEIYn 153 (1027)
.|+-||.+||||||++ +.+|+..+ .-.|.+.++|-|.
T Consensus 32 ~~~iyG~sgTGKT~~~--------r~~l~~~n-----~~~vw~n~~ecft 68 (438)
T KOG2543|consen 32 IVHIYGHSGTGKTYLV--------RQLLRKLN-----LENVWLNCVECFT 68 (438)
T ss_pred eEEEeccCCCchhHHH--------HHHHhhcC-----CcceeeehHHhcc
Confidence 4689999999999985 45555441 2237777777774
No 210
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=32.83 E-value=24 Score=44.27 Aligned_cols=25 Identities=32% Similarity=0.445 Sum_probs=19.8
Q ss_pred HHHHHhcCCCeeEEEecccCCCCcccc
Q 001693 93 VALAVVSGINSSVFAYGQTSSGKTYTM 119 (1027)
Q Consensus 93 lV~svL~G~NatIfAYGQTGSGKTyTM 119 (1027)
++..++.|.+ |++.+|||||||.+.
T Consensus 36 ai~~ll~g~d--vl~~ApTGsGKT~af 60 (629)
T PRK11634 36 CIPHLLNGRD--VLGMAQTGSGKTAAF 60 (629)
T ss_pred HHHHHHcCCC--EEEEcCCCCcHHHHH
Confidence 4556678876 677889999999875
No 211
>PRK04328 hypothetical protein; Provisional
Probab=32.78 E-value=28 Score=38.35 Aligned_cols=27 Identities=19% Similarity=0.210 Sum_probs=21.8
Q ss_pred HHHHHHhcC---CCeeEEEecccCCCCccc
Q 001693 92 EVALAVVSG---INSSVFAYGQTSSGKTYT 118 (1027)
Q Consensus 92 plV~svL~G---~NatIfAYGQTGSGKTyT 118 (1027)
+-+|.++.| ..++++.+|.+|+|||.-
T Consensus 10 ~~LD~lL~GGip~gs~ili~G~pGsGKT~l 39 (249)
T PRK04328 10 PGMDEILYGGIPERNVVLLSGGPGTGKSIF 39 (249)
T ss_pred hhHHHHhcCCCcCCcEEEEEcCCCCCHHHH
Confidence 456778876 588899999999999753
No 212
>cd01383 MYSc_type_VIII Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates f
Probab=32.59 E-value=41 Score=42.64 Aligned_cols=35 Identities=29% Similarity=0.412 Sum_probs=26.7
Q ss_pred hHHHhhHHHHHHHHh-cCCCeeEEEecccCCCCcccc
Q 001693 84 KVYEEGAKEVALAVV-SGINSSVFAYGQTSSGKTYTM 119 (1027)
Q Consensus 84 eVYe~~v~plV~svL-~G~NatIfAYGQTGSGKTyTM 119 (1027)
.||.- +......++ .|.|-||+.-|.+|||||.|.
T Consensus 74 Hifai-A~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 109 (677)
T cd01383 74 HVYAI-ADTAYNEMMRDEVNQSIIISGESGAGKTETA 109 (677)
T ss_pred CHHHH-HHHHHHHHHHcCCCceEEEecCCCCCcchHH
Confidence 56654 444444444 599999999999999999986
No 213
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=32.55 E-value=29 Score=42.67 Aligned_cols=41 Identities=24% Similarity=0.344 Sum_probs=28.4
Q ss_pred eecceeeCCCCChhhHHHhhHHHHHHHHhcCCCeeEEEecccCCCCccc
Q 001693 70 YTFDRVFSCDCTTRKVYEEGAKEVALAVVSGINSSVFAYGQTSSGKTYT 118 (1027)
Q Consensus 70 F~FD~VF~~~asQeeVYe~~v~plV~svL~G~NatIfAYGQTGSGKTyT 118 (1027)
.+|+.+++.+.. .+.+...++.+....|+-||++|+|||+.
T Consensus 62 ~~f~~iiGqs~~--------i~~l~~al~~~~~~~vLi~Ge~GtGKt~l 102 (531)
T TIGR02902 62 KSFDEIIGQEEG--------IKALKAALCGPNPQHVIIYGPPGVGKTAA 102 (531)
T ss_pred CCHHHeeCcHHH--------HHHHHHHHhCCCCceEEEECCCCCCHHHH
Confidence 468888885432 23333345566677788899999999875
No 214
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=32.55 E-value=24 Score=37.06 Aligned_cols=25 Identities=28% Similarity=0.336 Sum_probs=18.8
Q ss_pred HHHhcCC---CeeEEEecccCCCCcccc
Q 001693 95 LAVVSGI---NSSVFAYGQTSSGKTYTM 119 (1027)
Q Consensus 95 ~svL~G~---NatIfAYGQTGSGKTyTM 119 (1027)
|.++.|- ...+.-||.+|||||...
T Consensus 2 D~~l~GGi~~g~i~~i~G~~GsGKT~l~ 29 (209)
T TIGR02237 2 DELLGGGVERGTITQIYGPPGSGKTNIC 29 (209)
T ss_pred hhhhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 3455543 577889999999999765
No 215
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=32.41 E-value=35 Score=43.78 Aligned_cols=41 Identities=29% Similarity=0.383 Sum_probs=30.9
Q ss_pred HHHh-hHHHHHHHHhcCCCeeEEEecccCCCCcccccCChhhH
Q 001693 85 VYEE-GAKEVALAVVSGINSSVFAYGQTSSGKTYTMIGITEYT 126 (1027)
Q Consensus 85 VYe~-~v~plV~svL~G~NatIfAYGQTGSGKTyTM~GIi~ra 126 (1027)
-|+. ++..+++++-+|.+-.+++. .||+|||||-+-|+.+.
T Consensus 168 yyQ~~AI~rv~Eaf~~g~~raLlvM-ATGTGKTrTAiaii~rL 209 (875)
T COG4096 168 YYQIIAIRRVIEAFSKGQNRALLVM-ATGTGKTRTAIAIIDRL 209 (875)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEEE-ecCCCcceeHHHHHHHH
Confidence 3443 57778899999999965554 69999999998665543
No 216
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=32.25 E-value=19 Score=41.56 Aligned_cols=73 Identities=21% Similarity=0.309 Sum_probs=49.4
Q ss_pred CceeecceeeCCCCChhhHHHhhHHHHHHHHhc---CCCe--eEEEecccCCCCccccc---------------------
Q 001693 67 PTSYTFDRVFSCDCTTRKVYEEGAKEVALAVVS---GINS--SVFAYGQTSSGKTYTMI--------------------- 120 (1027)
Q Consensus 67 ~~sF~FD~VF~~~asQeeVYe~~v~plV~svL~---G~Na--tIfAYGQTGSGKTyTM~--------------------- 120 (1027)
+..|+||.|-+-...-.++-+.+.-|++...+- |+.. .+.-||+.|+|||+-..
T Consensus 126 ~~~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~k 205 (388)
T KOG0651|consen 126 PRNISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDK 205 (388)
T ss_pred ccccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhh
Confidence 557899998775444455555666666655442 4332 36789999999998652
Q ss_pred --CChhhHHHHHHHHHHhccc
Q 001693 121 --GITEYTMSDIYDYIEKHKE 139 (1027)
Q Consensus 121 --GIi~rav~dLF~~Ie~~~e 139 (1027)
|=..|.+++.|.+...+..
T Consensus 206 yiGEsaRlIRemf~yA~~~~p 226 (388)
T KOG0651|consen 206 YIGESARLIRDMFRYAREVIP 226 (388)
T ss_pred hcccHHHHHHHHHHHHhhhCc
Confidence 4445788899988876543
No 217
>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins. Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the hea
Probab=32.23 E-value=39 Score=42.94 Aligned_cols=36 Identities=19% Similarity=0.325 Sum_probs=26.4
Q ss_pred hHHHhhHHHHHHHHh-cCCCeeEEEecccCCCCccccc
Q 001693 84 KVYEEGAKEVALAVV-SGINSSVFAYGQTSSGKTYTMI 120 (1027)
Q Consensus 84 eVYe~~v~plV~svL-~G~NatIfAYGQTGSGKTyTM~ 120 (1027)
.||.- +......++ .|.|-||+.-|.+|||||.|.-
T Consensus 76 Hiy~i-A~~Ay~~m~~~~~~QsIiisGESGAGKTet~K 112 (692)
T cd01385 76 HIFAI-ADVAYYNMLRKKVNQCIVISGESGSGKTESTN 112 (692)
T ss_pred CHHHH-HHHHHHHHHhcCCCceEEEecCCCCCchHHHH
Confidence 46654 333333433 5899999999999999999863
No 218
>PRK10536 hypothetical protein; Provisional
Probab=32.15 E-value=26 Score=39.38 Aligned_cols=42 Identities=21% Similarity=0.319 Sum_probs=27.2
Q ss_pred eeecceeeCCCCChhhHHHhhHHHHHHHHhcCCCeeEEEecccCCCCccccc
Q 001693 69 SYTFDRVFSCDCTTRKVYEEGAKEVALAVVSGINSSVFAYGQTSSGKTYTMI 120 (1027)
Q Consensus 69 sF~FD~VF~~~asQeeVYe~~v~plV~svL~G~NatIfAYGQTGSGKTyTM~ 120 (1027)
.|.|-.|-+-+..|..... .+.+ +.-|+..|++||||||...
T Consensus 51 ~~~~~~i~p~n~~Q~~~l~--------al~~--~~lV~i~G~aGTGKT~La~ 92 (262)
T PRK10536 51 SRDTSPILARNEAQAHYLK--------AIES--KQLIFATGEAGCGKTWISA 92 (262)
T ss_pred hcCCccccCCCHHHHHHHH--------HHhc--CCeEEEECCCCCCHHHHHH
Confidence 4566666665555544333 2233 3488999999999999863
No 219
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=32.06 E-value=31 Score=40.12 Aligned_cols=43 Identities=19% Similarity=0.322 Sum_probs=31.5
Q ss_pred eecceeeCCCCChhhHHHhhHHHHHHHHhcCCCeeEEEecccCCCCccccc
Q 001693 70 YTFDRVFSCDCTTRKVYEEGAKEVALAVVSGINSSVFAYGQTSSGKTYTMI 120 (1027)
Q Consensus 70 F~FD~VF~~~asQeeVYe~~v~plV~svL~G~NatIfAYGQTGSGKTyTM~ 120 (1027)
|.|..|.+ |+ .+...++..+++..-+.++-.|.+|+|||..+.
T Consensus 1 ~pf~~ivg----q~----~~~~al~~~~~~~~~g~vli~G~~G~gKttl~r 43 (337)
T TIGR02030 1 FPFTAIVG----QD----EMKLALLLNVIDPKIGGVMVMGDRGTGKSTAVR 43 (337)
T ss_pred CCcccccc----HH----HHHHHHHHHhcCCCCCeEEEEcCCCCCHHHHHH
Confidence 45666666 32 345566777888777778899999999998873
No 220
>PF10412 TrwB_AAD_bind: Type IV secretion-system coupling protein DNA-binding domain; InterPro: IPR019476 The plasmid conjugative coupling protein TraD (also known as TrwB) is a basic integral inner-membrane nucleoside-triphosphate-binding protein. It is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells []. This protein forms hexamers from six structurally very similar protomers []. This hexamer contains a central channel running from the cytosolic pole (formed by the all-alpha domains) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB all-alpha domain appears to be the DNA-binding domain of the structure. ; PDB: 1E9S_D 1E9R_F 1GKI_B 1GL7_G 1GL6_A.
Probab=31.86 E-value=13 Score=43.70 Aligned_cols=18 Identities=33% Similarity=0.460 Sum_probs=13.1
Q ss_pred eEEEecccCCCCcccccC
Q 001693 104 SVFAYGQTSSGKTYTMIG 121 (1027)
Q Consensus 104 tIfAYGQTGSGKTyTM~G 121 (1027)
-++..|.||||||.+|..
T Consensus 17 ~~li~G~~GsGKT~~i~~ 34 (386)
T PF10412_consen 17 HILIIGATGSGKTQAIRH 34 (386)
T ss_dssp -EEEEE-TTSSHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHH
Confidence 477899999999986543
No 221
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=31.85 E-value=20 Score=41.54 Aligned_cols=17 Identities=41% Similarity=0.552 Sum_probs=14.2
Q ss_pred eeEEEecccCCCCcccc
Q 001693 103 SSVFAYGQTSSGKTYTM 119 (1027)
Q Consensus 103 atIfAYGQTGSGKTyTM 119 (1027)
+-|+..|+||||||+.-
T Consensus 98 SNILLiGPTGsGKTlLA 114 (408)
T COG1219 98 SNILLIGPTGSGKTLLA 114 (408)
T ss_pred ccEEEECCCCCcHHHHH
Confidence 45889999999999754
No 222
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=31.75 E-value=12 Score=42.10 Aligned_cols=21 Identities=29% Similarity=0.510 Sum_probs=18.3
Q ss_pred cCCCeeEEEecccCCCCcccc
Q 001693 99 SGINSSVFAYGQTSSGKTYTM 119 (1027)
Q Consensus 99 ~G~NatIfAYGQTGSGKTyTM 119 (1027)
.|++-+|+..|++|+|||.-+
T Consensus 1 kg~~fnImVvG~sG~GKTTFI 21 (281)
T PF00735_consen 1 KGFNFNIMVVGESGLGKTTFI 21 (281)
T ss_dssp HEEEEEEEEEECTTSSHHHHH
T ss_pred CCceEEEEEECCCCCCHHHHH
Confidence 488899999999999998753
No 223
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=31.70 E-value=44 Score=39.31 Aligned_cols=46 Identities=20% Similarity=0.356 Sum_probs=27.8
Q ss_pred eee-cc-eeeCCCCChhhHHHhhHHHHHHHHhcC---CCeeEEEecccCCCCcccc
Q 001693 69 SYT-FD-RVFSCDCTTRKVYEEGAKEVALAVVSG---INSSVFAYGQTSSGKTYTM 119 (1027)
Q Consensus 69 sF~-FD-~VF~~~asQeeVYe~~v~plV~svL~G---~NatIfAYGQTGSGKTyTM 119 (1027)
.|. || .||+. ++.-+.++.-+ .....| .+-.+.-.|++|+|||...
T Consensus 45 ~y~~F~~~~~G~----~~~i~~lv~~l-~~~a~g~~~~r~il~L~GPPGsGKStla 95 (361)
T smart00763 45 RYRFFDHDFFGM----EEAIERFVNYF-KSAAQGLEERKQILYLLGPVGGGKSSLV 95 (361)
T ss_pred eccccchhccCc----HHHHHHHHHHH-HHHHhcCCCCCcEEEEECCCCCCHHHHH
Confidence 344 45 78884 34444444322 333333 4566788999999999754
No 224
>cd01378 MYSc_type_I Myosin motor domain, type I myosins. Myosin I generates movement at the leading edge in cell motility, and class I myosins have been implicated in phagocytosis and vesicle transport. Myosin I, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 picon
Probab=31.60 E-value=41 Score=42.63 Aligned_cols=35 Identities=23% Similarity=0.322 Sum_probs=26.2
Q ss_pred hHHHhhHHHHHHHHh-cCCCeeEEEecccCCCCcccc
Q 001693 84 KVYEEGAKEVALAVV-SGINSSVFAYGQTSSGKTYTM 119 (1027)
Q Consensus 84 eVYe~~v~plV~svL-~G~NatIfAYGQTGSGKTyTM 119 (1027)
.||.- +......++ .|.|-||+.-|.+|||||.|.
T Consensus 68 Hifai-A~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 103 (674)
T cd01378 68 HIYAL-ADNAYRSMKSENENQCVIISGESGAGKTEAA 103 (674)
T ss_pred CHHHH-HHHHHHHHHHcCCCceEEEEcCCCCCcchHH
Confidence 46664 333334444 599999999999999999986
No 225
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=31.58 E-value=37 Score=41.25 Aligned_cols=27 Identities=26% Similarity=0.390 Sum_probs=20.2
Q ss_pred HhcCCCeeEEEecccCCCCccccc---CChhh
Q 001693 97 VVSGINSSVFAYGQTSSGKTYTMI---GITEY 125 (1027)
Q Consensus 97 vL~G~NatIfAYGQTGSGKTyTM~---GIi~r 125 (1027)
+..|.| ++.||+.|||||.... ||.|-
T Consensus 195 AAGgHn--Ll~~GpPGtGKTmla~Rl~~lLPp 224 (490)
T COG0606 195 AAGGHN--LLLVGPPGTGKTMLASRLPGLLPP 224 (490)
T ss_pred HhcCCc--EEEecCCCCchHHhhhhhcccCCC
Confidence 334555 6889999999998874 87663
No 226
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=31.44 E-value=48 Score=38.97 Aligned_cols=28 Identities=21% Similarity=0.349 Sum_probs=21.8
Q ss_pred HHHHHHHhcCCCeeEEEecccCCCCccccc
Q 001693 91 KEVALAVVSGINSSVFAYGQTSSGKTYTMI 120 (1027)
Q Consensus 91 ~plV~svL~G~NatIfAYGQTGSGKTyTM~ 120 (1027)
..+|..+|+|.+| +....||||||..+-
T Consensus 35 ~~cIpkILeGrdc--ig~AkTGsGKT~AFa 62 (442)
T KOG0340|consen 35 QACIPKILEGRDC--IGCAKTGSGKTAAFA 62 (442)
T ss_pred hhhhHHHhccccc--ccccccCCCcchhhh
Confidence 4467788899997 445699999998873
No 227
>cd01381 MYSc_type_VII Myosin motor domain, type VII myosins. Myosins in this group have been associated with functions in sensory systems such as vision and hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydr
Probab=31.43 E-value=43 Score=42.42 Aligned_cols=35 Identities=14% Similarity=0.281 Sum_probs=26.2
Q ss_pred hHHHhhHHHHHHHHh-cCCCeeEEEecccCCCCcccc
Q 001693 84 KVYEEGAKEVALAVV-SGINSSVFAYGQTSSGKTYTM 119 (1027)
Q Consensus 84 eVYe~~v~plV~svL-~G~NatIfAYGQTGSGKTyTM 119 (1027)
.||.- +......++ .|.|-||+.-|.+|||||.|.
T Consensus 68 Hifav-A~~Ay~~m~~~~~~QsIiisGESGaGKTes~ 103 (671)
T cd01381 68 HIFAI-SDNAYTNMQREKKNQCIIISGESGAGKTEST 103 (671)
T ss_pred CHHHH-HHHHHHHHHHcCCCceEEEEcCCCCCeehHH
Confidence 46654 333344444 599999999999999999986
No 228
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=31.40 E-value=20 Score=44.32 Aligned_cols=24 Identities=25% Similarity=0.353 Sum_probs=17.8
Q ss_pred eeEEEecccCCCCcccccCChhhH
Q 001693 103 SSVFAYGQTSSGKTYTMIGITEYT 126 (1027)
Q Consensus 103 atIfAYGQTGSGKTyTM~GIi~ra 126 (1027)
-..+-.|+.|+|||||+.=|+.++
T Consensus 202 ~l~~I~GPPGTGKT~TlvEiI~ql 225 (649)
T KOG1803|consen 202 DLLIIHGPPGTGKTRTLVEIISQL 225 (649)
T ss_pred CceEeeCCCCCCceeeHHHHHHHH
Confidence 345678999999999986544443
No 229
>cd01387 MYSc_type_XV Myosin motor domain, type XV myosins. In vertebrates, myosin XV appears to be expressed in sensory tissue and play a role in hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis caus
Probab=31.20 E-value=42 Score=42.57 Aligned_cols=35 Identities=23% Similarity=0.294 Sum_probs=26.6
Q ss_pred hHHHhhHHHHHHHHh-cCCCeeEEEecccCCCCcccc
Q 001693 84 KVYEEGAKEVALAVV-SGINSSVFAYGQTSSGKTYTM 119 (1027)
Q Consensus 84 eVYe~~v~plV~svL-~G~NatIfAYGQTGSGKTyTM 119 (1027)
.||.- +......++ .|.|-||+.-|.+|||||.|.
T Consensus 69 Hifav-A~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 104 (677)
T cd01387 69 HLFAI-ANLAFAKMLDAKQNQCVIISGESGSGKTEAT 104 (677)
T ss_pred CHHHH-HHHHHHHHHhcCCCceEEEEcCCCCCeehHH
Confidence 46664 444444444 699999999999999999986
No 230
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=31.18 E-value=27 Score=39.78 Aligned_cols=18 Identities=33% Similarity=0.421 Sum_probs=15.3
Q ss_pred eeEEEecccCCCCccccc
Q 001693 103 SSVFAYGQTSSGKTYTMI 120 (1027)
Q Consensus 103 atIfAYGQTGSGKTyTM~ 120 (1027)
..++-||++|+|||+...
T Consensus 52 ~~~ll~GppG~GKT~la~ 69 (328)
T PRK00080 52 DHVLLYGPPGLGKTTLAN 69 (328)
T ss_pred CcEEEECCCCccHHHHHH
Confidence 357789999999999874
No 231
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=31.02 E-value=24 Score=39.53 Aligned_cols=26 Identities=23% Similarity=0.344 Sum_probs=18.5
Q ss_pred HHHHHhcCCCeeEEEecccCCCCcccc
Q 001693 93 VALAVVSGINSSVFAYGQTSSGKTYTM 119 (1027)
Q Consensus 93 lV~svL~G~NatIfAYGQTGSGKTyTM 119 (1027)
+++..+.. +--++-+|++|+|||.++
T Consensus 25 ll~~l~~~-~~pvLl~G~~GtGKT~li 50 (272)
T PF12775_consen 25 LLDLLLSN-GRPVLLVGPSGTGKTSLI 50 (272)
T ss_dssp HHHHHHHC-TEEEEEESSTTSSHHHHH
T ss_pred HHHHHHHc-CCcEEEECCCCCchhHHH
Confidence 34444433 556788999999999875
No 232
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=30.96 E-value=37 Score=39.07 Aligned_cols=18 Identities=28% Similarity=0.302 Sum_probs=15.1
Q ss_pred eeEEEecccCCCCccccc
Q 001693 103 SSVFAYGQTSSGKTYTMI 120 (1027)
Q Consensus 103 atIfAYGQTGSGKTyTM~ 120 (1027)
..|.-.|++|+|||.|+.
T Consensus 115 ~vi~lvGpnGsGKTTt~~ 132 (318)
T PRK10416 115 FVILVVGVNGVGKTTTIG 132 (318)
T ss_pred eEEEEECCCCCcHHHHHH
Confidence 467778999999999974
No 233
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=30.92 E-value=56 Score=41.39 Aligned_cols=55 Identities=22% Similarity=0.340 Sum_probs=37.0
Q ss_pred CCCccccCCchhhhhhhhccCCCcc-----ce----eeeecCCCCcchHHHHHHHHHHHHhhccccccee
Q 001693 290 RNGHVPFRDSKLTRILQSSLGGNAR-----TA----IICTLSPARSHVEQSRNTLLFASCAKEVTTNAQV 350 (1027)
Q Consensus 290 k~~hIPYRDSKLTrLLqdSLGGNsk-----T~----mIatISPs~~~~eETlsTLrFAsRAK~Ikn~~~v 350 (1027)
+-.+-||-...|-.++...|.|-.. += =||.|| -++...|.++.||.+|..+..+
T Consensus 570 Ri~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavS------GDaRraldic~RA~Eia~~~~~ 633 (767)
T KOG1514|consen 570 RICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVS------GDARRALDICRRAAEIAEERNV 633 (767)
T ss_pred eeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhcc------ccHHHHHHHHHHHHHHhhhhcc
Confidence 3447788888888888888888510 00 124444 3567889999999988755444
No 234
>PRK05580 primosome assembly protein PriA; Validated
Probab=30.84 E-value=19 Score=45.51 Aligned_cols=18 Identities=39% Similarity=0.429 Sum_probs=15.0
Q ss_pred eeEEEecccCCCCccccc
Q 001693 103 SSVFAYGQTSSGKTYTMI 120 (1027)
Q Consensus 103 atIfAYGQTGSGKTyTM~ 120 (1027)
..++.+|+||||||.+.+
T Consensus 163 ~~~Ll~~~TGSGKT~v~l 180 (679)
T PRK05580 163 SPFLLDGVTGSGKTEVYL 180 (679)
T ss_pred CcEEEECCCCChHHHHHH
Confidence 458899999999997763
No 235
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=30.81 E-value=38 Score=41.33 Aligned_cols=26 Identities=31% Similarity=0.411 Sum_probs=19.6
Q ss_pred HHHHHHhcCCCeeEEEecccCCCCcccc
Q 001693 92 EVALAVVSGINSSVFAYGQTSSGKTYTM 119 (1027)
Q Consensus 92 plV~svL~G~NatIfAYGQTGSGKTyTM 119 (1027)
..+..++.|.| +++..+||||||.+.
T Consensus 150 ~aip~il~g~d--viv~ApTGSGKTlay 175 (518)
T PLN00206 150 QAIPAALSGRS--LLVSADTGSGKTASF 175 (518)
T ss_pred HHHHHHhcCCC--EEEEecCCCCccHHH
Confidence 44566778987 466679999999764
No 236
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=30.72 E-value=3.9e+02 Score=24.50 Aligned_cols=61 Identities=20% Similarity=0.255 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 001693 357 KALVKHLQRELSRLENELRGSGPVFITPDSVSVLREKDLRIEKLEKEVDELTMQRDLARTEVENLLRGAG 426 (1027)
Q Consensus 357 kalik~Lq~Ei~~Le~eL~~~~~~~~~~~~~~~l~ek~~~i~kle~ei~eL~~q~d~a~~~~~~l~~~~~ 426 (1027)
.+.|.+|+.|-..|...--. ....++....++..+++++.++..+++.+..+++.|...+.
T Consensus 11 De~Ia~L~eEGekLSk~el~---------~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l~ 71 (74)
T PF12329_consen 11 DEQIAQLMEEGEKLSKKELK---------LNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEERLK 71 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHh---------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34566777776666542111 12233334445666667777777777777777777666543
No 237
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=30.56 E-value=18 Score=39.55 Aligned_cols=20 Identities=30% Similarity=0.433 Sum_probs=16.6
Q ss_pred CeeEEEecccCCCCcccccC
Q 001693 102 NSSVFAYGQTSSGKTYTMIG 121 (1027)
Q Consensus 102 NatIfAYGQTGSGKTyTM~G 121 (1027)
...++-||..|+|||++..+
T Consensus 12 ~~~~liyG~~G~GKtt~a~~ 31 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKY 31 (220)
T ss_pred CcEEEEECCCCCCHHHHHHh
Confidence 45689999999999997644
No 238
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=30.43 E-value=2.6e+02 Score=26.17 Aligned_cols=44 Identities=30% Similarity=0.346 Sum_probs=34.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 001693 385 DSVSVLREKDLRIEKLEKEVDELTMQRDLARTEVENLLRGAGKG 428 (1027)
Q Consensus 385 ~~~~~l~ek~~~i~kle~ei~eL~~q~d~a~~~~~~l~~~~~~~ 428 (1027)
+...........++.++.++..|..++..+..++.++...+..-
T Consensus 59 ~~~~~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l~~~ 102 (106)
T PF01920_consen 59 DKEEAIEELEERIEKLEKEIKKLEKQLKYLEKKLKELKKKLYEL 102 (106)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566667777888899999999999999999998888777554
No 239
>PHA02244 ATPase-like protein
Probab=30.34 E-value=44 Score=39.59 Aligned_cols=46 Identities=22% Similarity=0.226 Sum_probs=25.8
Q ss_pred eeecceeeCCCCChhhHHHhhHHHHHHHHhcCCCeeEEEecccCCCCcccc
Q 001693 69 SYTFDRVFSCDCTTRKVYEEGAKEVALAVVSGINSSVFAYGQTSSGKTYTM 119 (1027)
Q Consensus 69 sF~FD~VF~~~asQeeVYe~~v~plV~svL~G~NatIfAYGQTGSGKTyTM 119 (1027)
...||.-|-.... .+......+...+-.|.+ |+-+|++|+|||+..
T Consensus 91 l~~~d~~~ig~sp---~~~~~~~ri~r~l~~~~P--VLL~GppGtGKTtLA 136 (383)
T PHA02244 91 ISGIDTTKIASNP---TFHYETADIAKIVNANIP--VFLKGGAGSGKNHIA 136 (383)
T ss_pred hhhCCCcccCCCH---HHHHHHHHHHHHHhcCCC--EEEECCCCCCHHHHH
Confidence 3455555543332 232222333333445665 455899999999875
No 240
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=30.32 E-value=28 Score=42.55 Aligned_cols=45 Identities=24% Similarity=0.299 Sum_probs=32.2
Q ss_pred eeecceeeCCCCChhhHHHhhHHHHHHHHhcCCCeeEEEecccCCCCcccc
Q 001693 69 SYTFDRVFSCDCTTRKVYEEGAKEVALAVVSGINSSVFAYGQTSSGKTYTM 119 (1027)
Q Consensus 69 sF~FD~VF~~~asQeeVYe~~v~plV~svL~G~NatIfAYGQTGSGKTyTM 119 (1027)
.|.||.+++.+..-.++.+.+ ..+ ...+..|+-+|.+||||++.-
T Consensus 192 ~~~~~~liG~s~~~~~~~~~~-----~~~-a~~~~pvli~Ge~GtGK~~lA 236 (534)
T TIGR01817 192 SGKEDGIIGKSPAMRQVVDQA-----RVV-ARSNSTVLLRGESGTGKELIA 236 (534)
T ss_pred cCccCceEECCHHHHHHHHHH-----HHH-hCcCCCEEEECCCCccHHHHH
Confidence 378999998766555555442 222 366888999999999998753
No 241
>cd01377 MYSc_type_II Myosin motor domain, type II myosins. Myosin II mediates cortical contraction in cell motility, and is the motor in smooth and skeletal muscle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydro
Probab=30.29 E-value=43 Score=42.59 Aligned_cols=36 Identities=19% Similarity=0.329 Sum_probs=26.9
Q ss_pred hhHHHhhHHHHHHHHh-cCCCeeEEEecccCCCCcccc
Q 001693 83 RKVYEEGAKEVALAVV-SGINSSVFAYGQTSSGKTYTM 119 (1027)
Q Consensus 83 eeVYe~~v~plV~svL-~G~NatIfAYGQTGSGKTyTM 119 (1027)
-.||.- +......++ .|.|-||+.-|.+|||||.+.
T Consensus 72 PHiyai-A~~Ay~~m~~~~~~QsIiiSGESGAGKTes~ 108 (693)
T cd01377 72 PHIFAI-ADNAYRSMLQDRENQSILITGESGAGKTENT 108 (693)
T ss_pred CCHHHH-HHHHHHHHHhcCCCceEEEEcCCCCCchHHH
Confidence 357764 444444444 599999999999999999985
No 242
>CHL00195 ycf46 Ycf46; Provisional
Probab=30.19 E-value=32 Score=41.93 Aligned_cols=17 Identities=24% Similarity=0.421 Sum_probs=15.1
Q ss_pred eeEEEecccCCCCcccc
Q 001693 103 SSVFAYGQTSSGKTYTM 119 (1027)
Q Consensus 103 atIfAYGQTGSGKTyTM 119 (1027)
-.|+-||+.|+|||++.
T Consensus 260 kGILL~GPpGTGKTllA 276 (489)
T CHL00195 260 RGLLLVGIQGTGKSLTA 276 (489)
T ss_pred ceEEEECCCCCcHHHHH
Confidence 46999999999999876
No 243
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=30.15 E-value=31 Score=43.18 Aligned_cols=42 Identities=19% Similarity=0.351 Sum_probs=30.0
Q ss_pred eecceeeCCCCChhhHHHhhHHHHHHHHhcCCCeeEEEecccCCCCcccc
Q 001693 70 YTFDRVFSCDCTTRKVYEEGAKEVALAVVSGINSSVFAYGQTSSGKTYTM 119 (1027)
Q Consensus 70 F~FD~VF~~~asQeeVYe~~v~plV~svL~G~NatIfAYGQTGSGKTyTM 119 (1027)
.+||.+++.+ .... .++..+..++...++-||++|+|||+..
T Consensus 151 ~~~~~iiGqs----~~~~----~l~~~ia~~~~~~vlL~Gp~GtGKTTLA 192 (615)
T TIGR02903 151 RAFSEIVGQE----RAIK----ALLAKVASPFPQHIILYGPPGVGKTTAA 192 (615)
T ss_pred CcHHhceeCc----HHHH----HHHHHHhcCCCCeEEEECCCCCCHHHHH
Confidence 4778787643 2332 2445556688888999999999999875
No 244
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=30.07 E-value=32 Score=38.38 Aligned_cols=17 Identities=29% Similarity=0.417 Sum_probs=14.3
Q ss_pred eEEEecccCCCCccccc
Q 001693 104 SVFAYGQTSSGKTYTMI 120 (1027)
Q Consensus 104 tIfAYGQTGSGKTyTM~ 120 (1027)
.++-||+.|+|||+...
T Consensus 32 ~~ll~Gp~G~GKT~la~ 48 (305)
T TIGR00635 32 HLLLYGPPGLGKTTLAH 48 (305)
T ss_pred eEEEECCCCCCHHHHHH
Confidence 46779999999998764
No 245
>PRK14974 cell division protein FtsY; Provisional
Probab=29.89 E-value=53 Score=38.21 Aligned_cols=19 Identities=26% Similarity=0.335 Sum_probs=16.3
Q ss_pred CeeEEEecccCCCCccccc
Q 001693 102 NSSVFAYGQTSSGKTYTMI 120 (1027)
Q Consensus 102 NatIfAYGQTGSGKTyTM~ 120 (1027)
...|.-.|.+|+|||.|+.
T Consensus 140 ~~vi~~~G~~GvGKTTtia 158 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIA 158 (336)
T ss_pred CeEEEEEcCCCCCHHHHHH
Confidence 4578889999999999974
No 246
>KOG2373 consensus Predicted mitochondrial DNA helicase twinkle [Replication, recombination and repair]
Probab=29.89 E-value=40 Score=39.55 Aligned_cols=28 Identities=32% Similarity=0.357 Sum_probs=20.6
Q ss_pred HHHHHHhcCCC---eeEEEecccCCCCccccc
Q 001693 92 EVALAVVSGIN---SSVFAYGQTSSGKTYTMI 120 (1027)
Q Consensus 92 plV~svL~G~N---atIfAYGQTGSGKTyTM~ 120 (1027)
|++...+.|.- -|||+ |+||||||.-|.
T Consensus 261 pvLNk~LkGhR~GElTvlT-GpTGsGKTTFls 291 (514)
T KOG2373|consen 261 PVLNKYLKGHRPGELTVLT-GPTGSGKTTFLS 291 (514)
T ss_pred hHHHHHhccCCCCceEEEe-cCCCCCceeEeh
Confidence 55666777654 45655 999999998884
No 247
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=29.81 E-value=1.3e+02 Score=26.70 Aligned_cols=28 Identities=32% Similarity=0.580 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001693 394 DLRIEKLEKEVDELTMQRDLARTEVENL 421 (1027)
Q Consensus 394 ~~~i~kle~ei~eL~~q~d~a~~~~~~l 421 (1027)
..++..+++++++++.+++.++.+++.|
T Consensus 23 ~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 23 NQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444444444444444444444443
No 248
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=29.69 E-value=52 Score=39.61 Aligned_cols=19 Identities=32% Similarity=0.391 Sum_probs=16.2
Q ss_pred CeeEEEecccCCCCccccc
Q 001693 102 NSSVFAYGQTSSGKTYTMI 120 (1027)
Q Consensus 102 NatIfAYGQTGSGKTyTM~ 120 (1027)
-..|+-+|.+|+|||+|..
T Consensus 95 p~vI~lvG~~GsGKTTtaa 113 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTAA 113 (437)
T ss_pred CeEEEEECCCCCcHHHHHH
Confidence 4578889999999999974
No 249
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=29.51 E-value=36 Score=36.63 Aligned_cols=29 Identities=21% Similarity=0.194 Sum_probs=21.9
Q ss_pred HHHHHHHhcCC---CeeEEEecccCCCCcccc
Q 001693 91 KEVALAVVSGI---NSSVFAYGQTSSGKTYTM 119 (1027)
Q Consensus 91 ~plV~svL~G~---NatIfAYGQTGSGKTyTM 119 (1027)
-+-+|.++.|- .++++.+|.+|||||+-.
T Consensus 11 i~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~ 42 (234)
T PRK06067 11 NEELDRKLGGGIPFPSLILIEGDHGTGKSVLS 42 (234)
T ss_pred CHHHHHhhCCCCcCCcEEEEECCCCCChHHHH
Confidence 34567777643 677888999999999865
No 250
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=29.28 E-value=24 Score=39.55 Aligned_cols=21 Identities=19% Similarity=0.445 Sum_probs=18.8
Q ss_pred cCCCeeEEEecccCCCCcccc
Q 001693 99 SGINSSVFAYGQTSSGKTYTM 119 (1027)
Q Consensus 99 ~G~NatIfAYGQTGSGKTyTM 119 (1027)
.|+...|+..|++|+|||..+
T Consensus 1 ~g~~f~I~vvG~sg~GKSTli 21 (276)
T cd01850 1 KGFQFNIMVVGESGLGKSTFI 21 (276)
T ss_pred CCcEEEEEEEcCCCCCHHHHH
Confidence 489999999999999999764
No 251
>KOG3990 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.28 E-value=1.1e+02 Score=34.22 Aligned_cols=63 Identities=21% Similarity=0.327 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCcchhHHHHHHHHHHHHHHH------HHHHHHH-HHHHHHHHHHHHHHHhcCCC
Q 001693 358 ALVKHLQRELSRLENELRGSGPVFITPDSVSVLREKDLRIEKLEK------EVDELTM-QRDLARTEVENLLRGAGKGS 429 (1027)
Q Consensus 358 alik~Lq~Ei~~Le~eL~~~~~~~~~~~~~~~l~ek~~~i~kle~------ei~eL~~-q~d~a~~~~~~l~~~~~~~~ 429 (1027)
..|..|++||++|+..|...... +-+++.+|..|.. +++.+-. ..+.++.++++.++.+....
T Consensus 225 V~i~~lkeeia~Lkk~L~qkdq~---------ileKdkqisnLKad~e~~~~~ek~Hke~v~qL~~k~~~~lk~~a~l~ 294 (305)
T KOG3990|consen 225 VKIQKLKEEIARLKKLLHQKDQL---------ILEKDKQISNLKADKEYQKELEKKHKERVQQLQKKKEESLKAIAQLR 294 (305)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHH---------HHhhhhhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35789999999999988765322 2345555544322 2222222 24455666666666665544
No 252
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=29.17 E-value=30 Score=42.84 Aligned_cols=26 Identities=27% Similarity=0.289 Sum_probs=19.9
Q ss_pred HHHHHHhcCCCeeEEEecccCCCCcccc
Q 001693 92 EVALAVVSGINSSVFAYGQTSSGKTYTM 119 (1027)
Q Consensus 92 plV~svL~G~NatIfAYGQTGSGKTyTM 119 (1027)
..+..+++|.| |++.++||||||.+.
T Consensus 38 ~~ip~~l~G~D--vi~~ApTGSGKTlaf 63 (572)
T PRK04537 38 LTLPVALPGGD--VAGQAQTGTGKTLAF 63 (572)
T ss_pred HHHHHHhCCCC--EEEEcCCCCcHHHHH
Confidence 34556789998 555779999999775
No 253
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=29.01 E-value=36 Score=42.66 Aligned_cols=36 Identities=22% Similarity=0.418 Sum_probs=28.9
Q ss_pred eeEEEecccCCCCccccc-----------------------CChhhHHHHHHHHHHhcc
Q 001693 103 SSVFAYGQTSSGKTYTMI-----------------------GITEYTMSDIYDYIEKHK 138 (1027)
Q Consensus 103 atIfAYGQTGSGKTyTM~-----------------------GIi~rav~dLF~~Ie~~~ 138 (1027)
-.|+.||+.|.|||.+.. |--++++.++|+...+..
T Consensus 469 kGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk~vGeSEr~ir~iF~kAR~~a 527 (693)
T KOG0730|consen 469 KGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSKYVGESERAIREVFRKARQVA 527 (693)
T ss_pred ceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHHHhcCchHHHHHHHHHHHhhcC
Confidence 459999999999998763 566788999998776644
No 254
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=28.95 E-value=45 Score=36.97 Aligned_cols=28 Identities=25% Similarity=0.246 Sum_probs=19.2
Q ss_pred HHHHHHHHhcCCCeeEEEecccCCCCcccc
Q 001693 90 AKEVALAVVSGINSSVFAYGQTSSGKTYTM 119 (1027)
Q Consensus 90 v~plV~svL~G~NatIfAYGQTGSGKTyTM 119 (1027)
...++..+..|.+ |+-+|++|+|||...
T Consensus 11 ~~~~l~~l~~g~~--vLL~G~~GtGKT~lA 38 (262)
T TIGR02640 11 TSRALRYLKSGYP--VHLRGPAGTGKTTLA 38 (262)
T ss_pred HHHHHHHHhcCCe--EEEEcCCCCCHHHHH
Confidence 3344455556665 456899999999865
No 255
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=28.81 E-value=20 Score=42.82 Aligned_cols=21 Identities=33% Similarity=0.378 Sum_probs=16.5
Q ss_pred eeEEEecccCCCCcccccCCh
Q 001693 103 SSVFAYGQTSSGKTYTMIGIT 123 (1027)
Q Consensus 103 atIfAYGQTGSGKTyTM~GIi 123 (1027)
..|+-.|+||+|||+|+..+.
T Consensus 222 ~~i~~vGptGvGKTTt~~kLA 242 (424)
T PRK05703 222 GVVALVGPTGVGKTTTLAKLA 242 (424)
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 356677999999999986543
No 256
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=28.61 E-value=22 Score=35.28 Aligned_cols=15 Identities=27% Similarity=0.406 Sum_probs=12.6
Q ss_pred EEEecccCCCCcccc
Q 001693 105 VFAYGQTSSGKTYTM 119 (1027)
Q Consensus 105 IfAYGQTGSGKTyTM 119 (1027)
|+..|..|||||+.-
T Consensus 2 i~l~G~~GsGKST~a 16 (150)
T cd02021 2 IVVMGVSGSGKSTVG 16 (150)
T ss_pred EEEEcCCCCCHHHHH
Confidence 677899999998763
No 257
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=28.58 E-value=37 Score=36.23 Aligned_cols=28 Identities=25% Similarity=0.292 Sum_probs=21.7
Q ss_pred HHHHHHhcC---CCeeEEEecccCCCCcccc
Q 001693 92 EVALAVVSG---INSSVFAYGQTSSGKTYTM 119 (1027)
Q Consensus 92 plV~svL~G---~NatIfAYGQTGSGKTyTM 119 (1027)
+-+|.++.| ....+.-+|++|||||..+
T Consensus 6 ~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~ 36 (235)
T cd01123 6 KALDELLGGGIETGSITEIFGEFGSGKTQLC 36 (235)
T ss_pred hhhHhhccCCCCCCeEEEEECCCCCCHHHHH
Confidence 456777775 4567889999999999765
No 258
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=28.54 E-value=50 Score=37.31 Aligned_cols=29 Identities=21% Similarity=0.250 Sum_probs=19.7
Q ss_pred HHHHHHHHhcCCCeeEEEecccCCCCccccc
Q 001693 90 AKEVALAVVSGINSSVFAYGQTSSGKTYTMI 120 (1027)
Q Consensus 90 v~plV~svL~G~NatIfAYGQTGSGKTyTM~ 120 (1027)
+..+.+.+-+|.+ ++.=.+||+|||.+.+
T Consensus 17 m~~v~~~~~~~~~--~~~eapTGtGKTl~~L 45 (289)
T smart00488 17 MEELKRVLDRGKI--GILESPTGTGKTLSLL 45 (289)
T ss_pred HHHHHHHHHcCCc--EEEECCCCcchhHHHH
Confidence 3345555567765 4556699999998863
No 259
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=28.54 E-value=50 Score=37.31 Aligned_cols=29 Identities=21% Similarity=0.250 Sum_probs=19.7
Q ss_pred HHHHHHHHhcCCCeeEEEecccCCCCccccc
Q 001693 90 AKEVALAVVSGINSSVFAYGQTSSGKTYTMI 120 (1027)
Q Consensus 90 v~plV~svL~G~NatIfAYGQTGSGKTyTM~ 120 (1027)
+..+.+.+-+|.+ ++.=.+||+|||.+.+
T Consensus 17 m~~v~~~~~~~~~--~~~eapTGtGKTl~~L 45 (289)
T smart00489 17 MEELKRVLDRGKI--GILESPTGTGKTLSLL 45 (289)
T ss_pred HHHHHHHHHcCCc--EEEECCCCcchhHHHH
Confidence 3345555567765 4556699999998863
No 260
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=28.48 E-value=1.7e+02 Score=30.96 Aligned_cols=32 Identities=25% Similarity=0.338 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001693 393 KDLRIEKLEKEVDELTMQRDLARTEVENLLRG 424 (1027)
Q Consensus 393 k~~~i~kle~ei~eL~~q~d~a~~~~~~l~~~ 424 (1027)
...+|+++++|+++.+.+.+.++.+.+++.+.
T Consensus 159 ~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~e 190 (192)
T PF05529_consen 159 LSEEIEKLKKELEKKEKEIEALKKQSEGLQKE 190 (192)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34556666666666666666666666665543
No 261
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=28.45 E-value=22 Score=36.14 Aligned_cols=17 Identities=29% Similarity=0.477 Sum_probs=14.2
Q ss_pred eeEEEecccCCCCcccc
Q 001693 103 SSVFAYGQTSSGKTYTM 119 (1027)
Q Consensus 103 atIfAYGQTGSGKTyTM 119 (1027)
+..+-||.+|+|||..|
T Consensus 20 g~~vi~G~Ng~GKStil 36 (202)
T PF13476_consen 20 GLNVIYGPNGSGKSTIL 36 (202)
T ss_dssp EEEEEEESTTSSHHHHH
T ss_pred CcEEEECCCCCCHHHHH
Confidence 45567899999999887
No 262
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=28.41 E-value=1.3e+02 Score=27.51 Aligned_cols=33 Identities=24% Similarity=0.310 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 001693 394 DLRIEKLEKEVDELTMQRDLARTEVENLLRGAG 426 (1027)
Q Consensus 394 ~~~i~kle~ei~eL~~q~d~a~~~~~~l~~~~~ 426 (1027)
...|.+|...+.++..++..+..+++.+...+.
T Consensus 32 ~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~ 64 (74)
T PF12329_consen 32 NNTIKKLRAKIKELEKQIKELKKKLEELEKELE 64 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666666666666666555443
No 263
>PHA02653 RNA helicase NPH-II; Provisional
Probab=28.41 E-value=46 Score=42.24 Aligned_cols=26 Identities=31% Similarity=0.213 Sum_probs=19.5
Q ss_pred HHHHHHHhcCCCeeEEEecccCCCCccc
Q 001693 91 KEVALAVVSGINSSVFAYGQTSSGKTYT 118 (1027)
Q Consensus 91 ~plV~svL~G~NatIfAYGQTGSGKTyT 118 (1027)
..++..+++|.+ |+..|+||||||..
T Consensus 170 ~qil~~i~~gkd--vIv~A~TGSGKTtq 195 (675)
T PHA02653 170 LKIFEAWISRKP--VVLTGGTGVGKTSQ 195 (675)
T ss_pred HHHHHHHHhCCC--EEEECCCCCCchhH
Confidence 345566667765 58899999999965
No 264
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=28.37 E-value=1.2e+02 Score=27.00 Aligned_cols=19 Identities=37% Similarity=0.660 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHhc
Q 001693 358 ALVKHLQRELSRLENELRG 376 (1027)
Q Consensus 358 alik~Lq~Ei~~Le~eL~~ 376 (1027)
+.+.+|++++..++.++..
T Consensus 4 ~E~~rL~Kel~kl~~~i~~ 22 (66)
T PF10458_consen 4 AEIERLEKELEKLEKEIER 22 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666544
No 265
>PRK00131 aroK shikimate kinase; Reviewed
Probab=28.33 E-value=26 Score=35.09 Aligned_cols=17 Identities=18% Similarity=0.253 Sum_probs=14.7
Q ss_pred eeEEEecccCCCCcccc
Q 001693 103 SSVFAYGQTSSGKTYTM 119 (1027)
Q Consensus 103 atIfAYGQTGSGKTyTM 119 (1027)
..|+.+|.+|||||+.-
T Consensus 5 ~~i~l~G~~GsGKstla 21 (175)
T PRK00131 5 PNIVLIGFMGAGKSTIG 21 (175)
T ss_pred CeEEEEcCCCCCHHHHH
Confidence 36899999999999874
No 266
>PF13173 AAA_14: AAA domain
Probab=28.32 E-value=24 Score=34.48 Aligned_cols=16 Identities=25% Similarity=0.349 Sum_probs=14.3
Q ss_pred eEEEecccCCCCcccc
Q 001693 104 SVFAYGQTSSGKTYTM 119 (1027)
Q Consensus 104 tIfAYGQTGSGKTyTM 119 (1027)
.++-+|+.|+|||+.+
T Consensus 4 ~~~l~G~R~vGKTtll 19 (128)
T PF13173_consen 4 IIILTGPRGVGKTTLL 19 (128)
T ss_pred eEEEECCCCCCHHHHH
Confidence 5788999999999986
No 267
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=28.26 E-value=2.4e+02 Score=27.75 Aligned_cols=29 Identities=21% Similarity=0.357 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001693 395 LRIEKLEKEVDELTMQRDLARTEVENLLR 423 (1027)
Q Consensus 395 ~~i~kle~ei~eL~~q~d~a~~~~~~l~~ 423 (1027)
.++..+.+|...|+.+++.++.++..+.+
T Consensus 29 ~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 29 KQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34555666666666666666666655544
No 268
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=28.26 E-value=3.1e+02 Score=29.21 Aligned_cols=56 Identities=25% Similarity=0.411 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001693 357 KALVKHLQRELSRLENELRGSGPVFITPDSVSVLREKDLRIEKLEKEVDELTMQRDLARTEVENL 421 (1027)
Q Consensus 357 kalik~Lq~Ei~~Le~eL~~~~~~~~~~~~~~~l~ek~~~i~kle~ei~eL~~q~d~a~~~~~~l 421 (1027)
...+..|+.++..|+.++... ...++++..-++.+..|+..|+.+...+..++..|
T Consensus 115 ~~~l~~l~~~~~~L~~~~~~l---------~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l 170 (194)
T PF08614_consen 115 ERRLAELEAELAQLEEKIKDL---------EEELKEKNKANEILQDELQALQLQLNMLEEKLRKL 170 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666655432 34455555555555555555544444444444333
No 269
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.11 E-value=4.4e+02 Score=24.39 Aligned_cols=57 Identities=19% Similarity=0.250 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001693 359 LVKHLQRELSRLENELRGSGPVFITPDSVSVLREKDLRIEKLEKEVDELTMQRDLARTEVENLLRG 424 (1027)
Q Consensus 359 lik~Lq~Ei~~Le~eL~~~~~~~~~~~~~~~l~ek~~~i~kle~ei~eL~~q~d~a~~~~~~l~~~ 424 (1027)
.|.-||-||..|+.+-... .....+....++.|+.+.++|+.+-..-|+++..|+-+
T Consensus 19 TI~LLQmEieELKEknn~l---------~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsLLGk 75 (79)
T COG3074 19 TITLLQMEIEELKEKNNSL---------SQEVQNAQHQREALERENEQLKEEQNGWQERLRALLGK 75 (79)
T ss_pred HHHHHHHHHHHHHHHhhHh---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4666777777777653322 11122234456667777777777777777777666543
No 270
>PRK10865 protein disaggregation chaperone; Provisional
Probab=28.09 E-value=50 Score=43.06 Aligned_cols=45 Identities=22% Similarity=0.242 Sum_probs=26.7
Q ss_pred eecceeeCCCCChhhHHHhhHHHHHHHHhcCCC------eeEEEecccCCCCcccc
Q 001693 70 YTFDRVFSCDCTTRKVYEEGAKEVALAVVSGIN------SSVFAYGQTSSGKTYTM 119 (1027)
Q Consensus 70 F~FD~VF~~~asQeeVYe~~v~plV~svL~G~N------atIfAYGQTGSGKTyTM 119 (1027)
.-+.+|++.+..-..|... + ..+..|.. +.++-+|++|+|||++.
T Consensus 565 ~l~~~viGQ~~ai~~l~~~----i-~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA 615 (857)
T PRK10865 565 ELHHRVIGQNEAVEAVSNA----I-RRSRAGLSDPNRPIGSFLFLGPTGVGKTELC 615 (857)
T ss_pred HhCCeEeCCHHHHHHHHHH----H-HHHHhcccCCCCCCceEEEECCCCCCHHHHH
Confidence 4467788754333333322 2 22223332 57788899999999976
No 271
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=28.07 E-value=45 Score=42.49 Aligned_cols=17 Identities=29% Similarity=0.559 Sum_probs=14.4
Q ss_pred eeEEEecccCCCCcccc
Q 001693 103 SSVFAYGQTSSGKTYTM 119 (1027)
Q Consensus 103 atIfAYGQTGSGKTyTM 119 (1027)
..|+-||++|+|||+..
T Consensus 488 ~giLL~GppGtGKT~la 504 (733)
T TIGR01243 488 KGVLLFGPPGTGKTLLA 504 (733)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 34788999999999876
No 272
>cd01380 MYSc_type_V Myosin motor domain, type V myosins. Myosins V transport a variety of intracellular cargo processively along actin filaments, such as membraneous organelles and mRNA. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an act
Probab=28.02 E-value=51 Score=41.97 Aligned_cols=35 Identities=23% Similarity=0.381 Sum_probs=26.1
Q ss_pred hHHHhhHHHHHHHHh-cCCCeeEEEecccCCCCcccc
Q 001693 84 KVYEEGAKEVALAVV-SGINSSVFAYGQTSSGKTYTM 119 (1027)
Q Consensus 84 eVYe~~v~plV~svL-~G~NatIfAYGQTGSGKTyTM 119 (1027)
.||.- +......++ .|.|-||+.-|.+|||||.+.
T Consensus 68 Hifai-A~~Ay~~m~~~~~~QsIiiSGESGaGKTes~ 103 (691)
T cd01380 68 HIFAI-AEEAYKQMTRDEKNQSIIVSGESGAGKTVSA 103 (691)
T ss_pred CHHHH-HHHHHHHHHhcCCCceEEEEcCCCCCchHHH
Confidence 46654 333334444 699999999999999999986
No 273
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=28.01 E-value=39 Score=40.99 Aligned_cols=41 Identities=24% Similarity=0.225 Sum_probs=26.1
Q ss_pred ecceeeCCCCChhhHHHhhHHHHHHHHhcCCC-eeEEEecccCCCCcccc
Q 001693 71 TFDRVFSCDCTTRKVYEEGAKEVALAVVSGIN-SSVFAYGQTSSGKTYTM 119 (1027)
Q Consensus 71 ~FD~VF~~~asQeeVYe~~v~plV~svL~G~N-atIfAYGQTGSGKTyTM 119 (1027)
+||.|.++ +.+ ...+...+-.|.- ..++-||+.|+|||++.
T Consensus 12 ~~~divGq----~~i----~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA 53 (472)
T PRK14962 12 TFSEVVGQ----DHV----KKLIINALKKNSISHAYIFAGPRGTGKTTVA 53 (472)
T ss_pred CHHHccCc----HHH----HHHHHHHHHcCCCCeEEEEECCCCCCHHHHH
Confidence 57777774 333 2333333334443 45789999999999876
No 274
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=27.98 E-value=36 Score=39.61 Aligned_cols=80 Identities=20% Similarity=0.256 Sum_probs=48.9
Q ss_pred cceeeCCCCChhhHHHhhHHHHHHHHh-cCCCeeEEEecccCCCCccccc--CChhhHHHHHHHHHHhccccceeEeeee
Q 001693 72 FDRVFSCDCTTRKVYEEGAKEVALAVV-SGINSSVFAYGQTSSGKTYTMI--GITEYTMSDIYDYIEKHKEREFVLKFSA 148 (1027)
Q Consensus 72 FD~VF~~~asQeeVYe~~v~plV~svL-~G~NatIfAYGQTGSGKTyTM~--GIi~rav~dLF~~Ie~~~e~~f~V~vS~ 148 (1027)
|-.|=..+.++.+-=...+..+|+.++ .||. +|.||..|.|||+.+. +|.--+-.++|.+-...+ .-.+.||
T Consensus 60 f~~v~a~~~~~~eWdrs~~P~lId~~fr~g~~--~~~~gdsg~GKttllL~l~IalaaG~~lfG~~v~ep--Gkvlyvs- 134 (402)
T COG3598 60 FIQVQAEAMRLSEWDRSNSPQLIDEFFRKGYV--SILYGDSGVGKTTLLLYLCIALAAGKNLFGNKVKEP--GKVLYVS- 134 (402)
T ss_pred eeEehhhhcChhhcCcccChhhhhHHhhcCee--EEEecCCcccHhHHHHHHHHHHHhhHHHhcccccCC--CeEEEEE-
Confidence 336655555554433456677777766 4665 5779999999999885 666666777777422222 2223443
Q ss_pred eEeecccc
Q 001693 149 MEIYNESV 156 (1027)
Q Consensus 149 lEIYnE~V 156 (1027)
+|.|.|.+
T Consensus 135 lEl~re~~ 142 (402)
T COG3598 135 LELYREDI 142 (402)
T ss_pred eccChHHH
Confidence 46675543
No 275
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=27.87 E-value=1.5e+02 Score=36.16 Aligned_cols=28 Identities=25% Similarity=0.445 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001693 398 EKLEKEVDELTMQRDLARTEVENLLRGA 425 (1027)
Q Consensus 398 ~kle~ei~eL~~q~d~a~~~~~~l~~~~ 425 (1027)
+++.++.++|+.++..++..+++|.+.+
T Consensus 112 ~~~~~~~~ql~~~~~~~~~~l~~l~~~l 139 (472)
T TIGR03752 112 QELTKEIEQLKSERQQLQGLIDQLQRRL 139 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666666666666655
No 276
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=27.86 E-value=54 Score=37.80 Aligned_cols=35 Identities=26% Similarity=0.504 Sum_probs=28.3
Q ss_pred eEEEecccCCCCcccc-----------c------------CChhhHHHHHHHHHHhcc
Q 001693 104 SVFAYGQTSSGKTYTM-----------I------------GITEYTMSDIYDYIEKHK 138 (1027)
Q Consensus 104 tIfAYGQTGSGKTyTM-----------~------------GIi~rav~dLF~~Ie~~~ 138 (1027)
.|+-||..|+|||..- . |--|+.+++||+..+.+.
T Consensus 221 GVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQkylGdGpklvRqlF~vA~e~a 278 (440)
T KOG0726|consen 221 GVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHA 278 (440)
T ss_pred eeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHHHHhccchHHHHHHHHHHHhcC
Confidence 4789999999998543 1 667899999999887765
No 277
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=27.81 E-value=37 Score=41.81 Aligned_cols=43 Identities=28% Similarity=0.501 Sum_probs=31.2
Q ss_pred CceeecceeeCCCCChhhHHHhhHHHHHHHHhcCCCeeEEEecccCCCC
Q 001693 67 PTSYTFDRVFSCDCTTRKVYEEGAKEVALAVVSGINSSVFAYGQTSSGK 115 (1027)
Q Consensus 67 ~~sF~FD~VF~~~asQeeVYe~~v~plV~svL~G~NatIfAYGQTGSGK 115 (1027)
...|+||.+.+.+..-.++-+ ++ .-..+.+++|+-+|.||+||
T Consensus 239 ~a~y~f~~Iig~S~~m~~~~~-----~a-kr~A~tdstVLi~GESGTGK 281 (560)
T COG3829 239 KAKYTFDDIIGESPAMLRVLE-----LA-KRIAKTDSTVLILGESGTGK 281 (560)
T ss_pred ccccchhhhccCCHHHHHHHH-----HH-HhhcCCCCcEEEecCCCccH
Confidence 456999999996544333322 22 23479999999999999999
No 278
>PRK00846 hypothetical protein; Provisional
Probab=27.80 E-value=3.9e+02 Score=25.04 Aligned_cols=51 Identities=14% Similarity=0.038 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001693 362 HLQRELSRLENELRGSGPVFITPDSVSVLREKDLRIEKLEKEVDELTMQRDLARTEVENL 421 (1027)
Q Consensus 362 ~Lq~Ei~~Le~eL~~~~~~~~~~~~~~~l~ek~~~i~kle~ei~eL~~q~d~a~~~~~~l 421 (1027)
.+...|..|+..+.-. ...+.+.+..+-+..++|..|+.++..+..++..+
T Consensus 10 ~le~Ri~~LE~rlAfQ---------e~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~ 60 (77)
T PRK00846 10 ALEARLVELETRLSFQ---------EQALTELSEALADARLTGARNAELIRHLLEDLGKV 60 (77)
T ss_pred hHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556666666655432 12233334444444455555555555544444443
No 279
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=27.77 E-value=32 Score=41.27 Aligned_cols=27 Identities=26% Similarity=0.255 Sum_probs=20.5
Q ss_pred HHHHHHHhcCCCeeEEEecccCCCCcccc
Q 001693 91 KEVALAVVSGINSSVFAYGQTSSGKTYTM 119 (1027)
Q Consensus 91 ~plV~svL~G~NatIfAYGQTGSGKTyTM 119 (1027)
...+..+++|.|..+ .++||||||.+.
T Consensus 115 ~~ai~~~~~G~dvi~--~apTGSGKTlay 141 (475)
T PRK01297 115 AQVLGYTLAGHDAIG--RAQTGTGKTAAF 141 (475)
T ss_pred HHHHHHHhCCCCEEE--ECCCCChHHHHH
Confidence 345677889988654 559999999764
No 280
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=27.74 E-value=31 Score=42.14 Aligned_cols=47 Identities=17% Similarity=0.334 Sum_probs=32.4
Q ss_pred CceeecceeeCCCCChhhHHHhhHHHHHHHHhcCCCeeEEEecccCCCCcccc
Q 001693 67 PTSYTFDRVFSCDCTTRKVYEEGAKEVALAVVSGINSSVFAYGQTSSGKTYTM 119 (1027)
Q Consensus 67 ~~sF~FD~VF~~~asQeeVYe~~v~plV~svL~G~NatIfAYGQTGSGKTyTM 119 (1027)
...+.||.+++.+..-..+.+.+ .. +...+..|+-+|.+||||++..
T Consensus 198 ~~~~~f~~~ig~s~~~~~~~~~~-----~~-~A~~~~pvlI~GE~GtGK~~lA 244 (520)
T PRK10820 198 NDDSAFSQIVAVSPKMRQVVEQA-----RK-LAMLDAPLLITGDTGTGKDLLA 244 (520)
T ss_pred cccccccceeECCHHHHHHHHHH-----HH-HhCCCCCEEEECCCCccHHHHH
Confidence 34689999998665444444432 12 2346778999999999998764
No 281
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=27.71 E-value=52 Score=35.49 Aligned_cols=36 Identities=17% Similarity=0.065 Sum_probs=22.5
Q ss_pred hHHHhhHHHHHHHHhc-CCCeeEEEecccCCCCcccc
Q 001693 84 KVYEEGAKEVALAVVS-GINSSVFAYGQTSSGKTYTM 119 (1027)
Q Consensus 84 eVYe~~v~plV~svL~-G~NatIfAYGQTGSGKTyTM 119 (1027)
.+|..++.-+...+-. +....|.-.|.+|||||+.+
T Consensus 14 ~~~~~l~~~~~~~~~~~~~~~iigi~G~~GsGKTTl~ 50 (229)
T PRK09270 14 AVHKPLLRRLAALQAEPQRRTIVGIAGPPGAGKSTLA 50 (229)
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEEEECCCCCCHHHHH
Confidence 4455544444433333 44555667799999999875
No 282
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=27.62 E-value=24 Score=31.34 Aligned_cols=15 Identities=27% Similarity=0.439 Sum_probs=12.6
Q ss_pred EEEecccCCCCcccc
Q 001693 105 VFAYGQTSSGKTYTM 119 (1027)
Q Consensus 105 IfAYGQTGSGKTyTM 119 (1027)
.+-+|++|||||..|
T Consensus 26 tli~G~nGsGKSTll 40 (62)
T PF13555_consen 26 TLITGPNGSGKSTLL 40 (62)
T ss_pred EEEECCCCCCHHHHH
Confidence 456799999999876
No 283
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=27.51 E-value=62 Score=38.71 Aligned_cols=50 Identities=32% Similarity=0.429 Sum_probs=30.4
Q ss_pred CCceeecceeeCCCCChhhHHHhhHH-------HHH----HHHhcCCCeeEEEecccCCCCccccc
Q 001693 66 YPTSYTFDRVFSCDCTTRKVYEEGAK-------EVA----LAVVSGINSSVFAYGQTSSGKTYTMI 120 (1027)
Q Consensus 66 ~~~sF~FD~VF~~~asQeeVYe~~v~-------plV----~svL~G~NatIfAYGQTGSGKTyTM~ 120 (1027)
.+-..+||..|.... +|.+.+-+ |+- .-+|+|.+.+..| |||+|||....
T Consensus 215 PnP~ctFddAFq~~p---evmenIkK~GFqKPtPIqSQaWPI~LQG~DliGVA--QTgtgKtL~~L 275 (629)
T KOG0336|consen 215 PNPVCTFDDAFQCYP---EVMENIKKTGFQKPTPIQSQAWPILLQGIDLIGVA--QTGTGKTLAFL 275 (629)
T ss_pred CCCcCcHHHHHhhhH---HHHHHHHhccCCCCCcchhcccceeecCcceEEEE--ecCCCcCHHHh
Confidence 345688998887432 23332211 111 1157899987666 99999996653
No 284
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=27.32 E-value=2.5e+02 Score=32.49 Aligned_cols=64 Identities=19% Similarity=0.280 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 001693 358 ALVKHLQRELSRLENELRGSGPVFITPDSVSVLREKDLRIEKLEKEVDELTMQRDLARTEVENLLRGAGKGSA 430 (1027)
Q Consensus 358 alik~Lq~Ei~~Le~eL~~~~~~~~~~~~~~~l~ek~~~i~kle~ei~eL~~q~d~a~~~~~~l~~~~~~~~~ 430 (1027)
...+.++.+++.+..++... ...+.+...+.+.+...|++...++..+++++.++.+...+.++
T Consensus 204 ~eL~~lk~~l~~~~~ei~~~---------~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~r~ 267 (312)
T smart00787 204 TELDRAKEKLKKLLQEIMIK---------VKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCRG 267 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 34455555555555544332 23455566666677777777777777777777777776666554
No 285
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=26.95 E-value=60 Score=37.14 Aligned_cols=36 Identities=22% Similarity=0.358 Sum_probs=26.0
Q ss_pred CeeEEEecccCCCCcccccCChhhHHHHHHHHHHhccccceeEe
Q 001693 102 NSSVFAYGQTSSGKTYTMIGITEYTMSDIYDYIEKHKEREFVLK 145 (1027)
Q Consensus 102 NatIfAYGQTGSGKTyTM~GIi~rav~dLF~~Ie~~~e~~f~V~ 145 (1027)
-+||+..|..|||||.- ++.|..++.......|.|.
T Consensus 19 p~~ilVvGMAGSGKTTF--------~QrL~~hl~~~~~ppYviN 54 (366)
T KOG1532|consen 19 PVIILVVGMAGSGKTTF--------MQRLNSHLHAKKTPPYVIN 54 (366)
T ss_pred CcEEEEEecCCCCchhH--------HHHHHHHHhhccCCCeEEe
Confidence 46899999999999975 4666666665555555544
No 286
>PRK06696 uridine kinase; Validated
Probab=26.92 E-value=55 Score=35.18 Aligned_cols=35 Identities=26% Similarity=0.106 Sum_probs=21.4
Q ss_pred hHHHhhHHHHHHHHhcCCCeeEEEecccCCCCcccc
Q 001693 84 KVYEEGAKEVALAVVSGINSSVFAYGQTSSGKTYTM 119 (1027)
Q Consensus 84 eVYe~~v~plV~svL~G~NatIfAYGQTGSGKTyTM 119 (1027)
++.+.++..++.. -.+....|..-|.+|||||+..
T Consensus 5 ~~~~~la~~~~~~-~~~~~~iI~I~G~sgsGKSTlA 39 (223)
T PRK06696 5 QLIKELAEHILTL-NLTRPLRVAIDGITASGKTTFA 39 (223)
T ss_pred HHHHHHHHHHHHh-CCCCceEEEEECCCCCCHHHHH
Confidence 3444433333321 2355566778899999999864
No 287
>PRK07261 topology modulation protein; Provisional
Probab=26.88 E-value=27 Score=36.21 Aligned_cols=15 Identities=27% Similarity=0.350 Sum_probs=12.7
Q ss_pred EEEecccCCCCcccc
Q 001693 105 VFAYGQTSSGKTYTM 119 (1027)
Q Consensus 105 IfAYGQTGSGKTyTM 119 (1027)
|+..|.+|||||+-.
T Consensus 3 i~i~G~~GsGKSTla 17 (171)
T PRK07261 3 IAIIGYSGSGKSTLA 17 (171)
T ss_pred EEEEcCCCCCHHHHH
Confidence 678899999998754
No 288
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=26.86 E-value=39 Score=39.16 Aligned_cols=26 Identities=27% Similarity=0.225 Sum_probs=21.0
Q ss_pred HHHHhcCCCeeEEEecccCCCCcccc
Q 001693 94 ALAVVSGINSSVFAYGQTSSGKTYTM 119 (1027)
Q Consensus 94 V~svL~G~NatIfAYGQTGSGKTyTM 119 (1027)
...+.+|-+..++..++||||||...
T Consensus 6 ~~~~~~~~~~~~~i~apTGsGKT~~~ 31 (357)
T TIGR03158 6 FEALQSKDADIIFNTAPTGAGKTLAW 31 (357)
T ss_pred HHHHHcCCCCEEEEECCCCCCHHHHH
Confidence 34567788777888899999999874
No 289
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=26.82 E-value=36 Score=43.59 Aligned_cols=19 Identities=42% Similarity=0.510 Sum_probs=15.8
Q ss_pred CCeeEEEecccCCCCcccc
Q 001693 101 INSSVFAYGQTSSGKTYTM 119 (1027)
Q Consensus 101 ~NatIfAYGQTGSGKTyTM 119 (1027)
-|-.++.+|+||||||+-+
T Consensus 270 ~n~vvIIcGeTGsGKTTQv 288 (1172)
T KOG0926|consen 270 ENPVVIICGETGSGKTTQV 288 (1172)
T ss_pred cCCeEEEecCCCCCccccc
Confidence 3556778899999999887
No 290
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=26.77 E-value=61 Score=35.98 Aligned_cols=39 Identities=21% Similarity=0.166 Sum_probs=24.7
Q ss_pred CCChhhHHHhhHHHHHHHHhc-C-CCeeEEEecccCCCCccc
Q 001693 79 DCTTRKVYEEGAKEVALAVVS-G-INSSVFAYGQTSSGKTYT 118 (1027)
Q Consensus 79 ~asQeeVYe~~v~plV~svL~-G-~NatIfAYGQTGSGKTyT 118 (1027)
-.-|+.|-.. .+.++..+.. | .=..++-||+.|.|||..
T Consensus 26 fiGQ~~l~~~-l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTL 66 (233)
T PF05496_consen 26 FIGQEHLKGN-LKILIRAAKKRGEALDHMLFYGPPGLGKTTL 66 (233)
T ss_dssp S-S-HHHHHH-HHHHHHHHHCTTS---EEEEESSTTSSHHHH
T ss_pred ccCcHHHHhh-hHHHHHHHHhcCCCcceEEEECCCccchhHH
Confidence 3447888776 5666666653 2 334688899999999754
No 291
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=26.75 E-value=27 Score=35.74 Aligned_cols=15 Identities=40% Similarity=0.549 Sum_probs=13.0
Q ss_pred EEEecccCCCCcccc
Q 001693 105 VFAYGQTSSGKTYTM 119 (1027)
Q Consensus 105 IfAYGQTGSGKTyTM 119 (1027)
|+.+|..|||||+.-
T Consensus 2 i~i~G~pGsGKst~a 16 (183)
T TIGR01359 2 VFVLGGPGSGKGTQC 16 (183)
T ss_pred EEEECCCCCCHHHHH
Confidence 788999999998863
No 292
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=26.55 E-value=39 Score=38.42 Aligned_cols=29 Identities=28% Similarity=0.307 Sum_probs=20.0
Q ss_pred HHHHHHHhcCCCeeEEEecccCCCCccccc
Q 001693 91 KEVALAVVSGINSSVFAYGQTSSGKTYTMI 120 (1027)
Q Consensus 91 ~plV~svL~G~NatIfAYGQTGSGKTyTM~ 120 (1027)
.+++..++.+. ..|+-.|.||||||..|.
T Consensus 134 ~~~l~~~v~~~-~~ili~G~tGsGKTTll~ 162 (308)
T TIGR02788 134 KEFLRLAIASR-KNIIISGGTGSGKTTFLK 162 (308)
T ss_pred HHHHHHHhhCC-CEEEEECCCCCCHHHHHH
Confidence 44555555443 456667999999999873
No 293
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=26.54 E-value=44 Score=39.79 Aligned_cols=22 Identities=32% Similarity=0.462 Sum_probs=17.7
Q ss_pred eeEEEecccCCCCcccccCChhhH
Q 001693 103 SSVFAYGQTSSGKTYTMIGITEYT 126 (1027)
Q Consensus 103 atIfAYGQTGSGKTyTM~GIi~ra 126 (1027)
.-++.+|+||||||.++ ++|.+
T Consensus 45 ~h~lvig~tgSGKt~~~--viP~l 66 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSF--VIPNL 66 (469)
T ss_pred eEEEEEeCCCCCcccee--eHhHH
Confidence 56889999999999987 35544
No 294
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=26.53 E-value=32 Score=40.09 Aligned_cols=21 Identities=24% Similarity=0.407 Sum_probs=16.1
Q ss_pred EEEecccCCCCcccccCChhhHH
Q 001693 105 VFAYGQTSSGKTYTMIGITEYTM 127 (1027)
Q Consensus 105 IfAYGQTGSGKTyTM~GIi~rav 127 (1027)
++..|.||||||+++. +|.++
T Consensus 2 ~lv~g~tGsGKt~~~v--iP~ll 22 (384)
T cd01126 2 VLVFAPTRSGKGVGFV--IPNLL 22 (384)
T ss_pred eeEecCCCCCCccEEE--ccchh
Confidence 5788999999999873 44433
No 295
>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi. Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1 [].
Probab=26.42 E-value=3.1e+02 Score=24.89 Aligned_cols=60 Identities=20% Similarity=0.251 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001693 358 ALVKHLQRELSRLENELRGSGPVFITPDSVSVLREKDLRIEKLEKEVDELTMQRDLARTEVENLL 422 (1027)
Q Consensus 358 alik~Lq~Ei~~Le~eL~~~~~~~~~~~~~~~l~ek~~~i~kle~ei~eL~~q~d~a~~~~~~l~ 422 (1027)
.+.+.|..++..+..+|+..- ...+..+-....+|..|+..+.++...+..++..++.+.
T Consensus 26 ~~~~~L~~~i~~~~~eLr~~V-----~~nY~~fI~as~~I~~m~~~~~~l~~~l~~l~~~~~~l~ 85 (87)
T PF08700_consen 26 QLENKLRQEIEEKDEELRKLV-----YENYRDFIEASDEISSMENDLSELRNLLSELQQSIQSLQ 85 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455677778888888877642 122344445566788888888888888888777777654
No 296
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=26.10 E-value=3.1e+02 Score=28.49 Aligned_cols=18 Identities=33% Similarity=0.632 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHhcC
Q 001693 360 VKHLQRELSRLENELRGS 377 (1027)
Q Consensus 360 ik~Lq~Ei~~Le~eL~~~ 377 (1027)
+..|++++..|+.++...
T Consensus 81 i~~L~~el~~l~~~~k~l 98 (169)
T PF07106_consen 81 IKELREELAELKKEVKSL 98 (169)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 566666666666665544
No 297
>PRK04296 thymidine kinase; Provisional
Probab=26.09 E-value=24 Score=37.16 Aligned_cols=24 Identities=25% Similarity=0.350 Sum_probs=18.2
Q ss_pred eeEEEecccCCCCcccccCChhhH
Q 001693 103 SSVFAYGQTSSGKTYTMIGITEYT 126 (1027)
Q Consensus 103 atIfAYGQTGSGKTyTM~GIi~ra 126 (1027)
..++-+|+.|+|||..++|++.++
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~ 26 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNY 26 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHH
Confidence 356789999999998876654443
No 298
>KOG2959 consensus Transcriptional regulator [Transcription]
Probab=26.09 E-value=48 Score=35.68 Aligned_cols=54 Identities=22% Similarity=0.401 Sum_probs=36.4
Q ss_pred HhhCcCCCCcchh-------hHHhhhcCCcc--chhhHHH------HHHHHHHHhccc---CCC-chhhhhhc
Q 001693 951 LKWGIGLQTKHRS-------LQLAHLLWTSK--DLNHVAE------SAAIVSKLVTFV---KPD-QAFREMFG 1004 (1027)
Q Consensus 951 ~kwgi~l~~k~rr-------lql~~~lWt~~--d~~hv~e------Sa~~Vaklv~~~---~~~-~~~kemf~ 1004 (1027)
-+|.||..-|-|- .|-..++-..+ ||+.|-+ --+|.-||+.|| |+| .-+|+||.
T Consensus 115 ~~~kiPpePkg~~s~eL~~KI~k~y~~k~k~~mdmnrliq~~keFRNPsiydkLi~FcdI~E~gTnypkdm~D 187 (238)
T KOG2959|consen 115 PHWKIPPEPKGEVSTELEKKIKKFYKLKAKGIMDMNRLIQDNKEFRNPSIYDKLIDFCDIKEPGTNYPKDMWD 187 (238)
T ss_pred ccccCCCCCCCcccHHHHHHHHHHHHHHhhcchhHHHHHhhhhhccCcHHHHHHHHHhccccccccCChhhcC
Confidence 4799999988763 23333334444 6666655 357999999999 455 56777764
No 299
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=25.97 E-value=36 Score=42.92 Aligned_cols=43 Identities=21% Similarity=0.289 Sum_probs=28.7
Q ss_pred eecceeeCCCCChhhHHHhhHHHHHHHHhcCCCeeEEEecccCCCCccc
Q 001693 70 YTFDRVFSCDCTTRKVYEEGAKEVALAVVSGINSSVFAYGQTSSGKTYT 118 (1027)
Q Consensus 70 F~FD~VF~~~asQeeVYe~~v~plV~svL~G~NatIfAYGQTGSGKTyT 118 (1027)
+.|+.+++.+..-..+.+.+ .. +...+..|+-+|.+|||||+.
T Consensus 373 ~~~~~liG~S~~~~~~~~~~-----~~-~a~~~~pVLI~GE~GTGK~~l 415 (686)
T PRK15429 373 SEFGEIIGRSEAMYSVLKQV-----EM-VAQSDSTVLILGETGTGKELI 415 (686)
T ss_pred ccccceeecCHHHHHHHHHH-----HH-HhCCCCCEEEECCCCcCHHHH
Confidence 56777777554444444432 22 345677899999999999874
No 300
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=25.83 E-value=48 Score=43.34 Aligned_cols=22 Identities=23% Similarity=0.341 Sum_probs=16.5
Q ss_pred eEEEecccCCCCcccc-------cCChhh
Q 001693 104 SVFAYGQTSSGKTYTM-------IGITEY 125 (1027)
Q Consensus 104 tIfAYGQTGSGKTyTM-------~GIi~r 125 (1027)
..+-+|+||||||.-+ ||-.++
T Consensus 27 i~lI~G~nGsGKSSIldAI~~ALyG~~~~ 55 (908)
T COG0419 27 IFLIVGPNGAGKSSILDAITFALYGKTPR 55 (908)
T ss_pred eEEEECCCCCcHHHHHHHHHHHHcCCCCC
Confidence 4456799999998665 687773
No 301
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=25.71 E-value=2e+02 Score=38.19 Aligned_cols=64 Identities=27% Similarity=0.391 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 001693 358 ALVKHLQRELSRLENELRGSGPVFITPDSVSVLREKDLRIEKLEKEVDELTMQRDLARTEVENLLRGAGKGS 429 (1027)
Q Consensus 358 alik~Lq~Ei~~Le~eL~~~~~~~~~~~~~~~l~ek~~~i~kle~ei~eL~~q~d~a~~~~~~l~~~~~~~~ 429 (1027)
.-+..|.++|..+++++. ......+.+...+++.|+++++.++.++..+.++++.+.+.+...+
T Consensus 372 ~~~d~l~k~I~~~~~~~~--------~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ 435 (1074)
T KOG0250|consen 372 KEVDRLEKQIADLEKQTN--------NELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEE 435 (1074)
T ss_pred HHHHHHHHHHHHHHHHHH--------hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 344555566666655552 2234556677778888888888888888888888888777776554
No 302
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=25.71 E-value=41 Score=39.05 Aligned_cols=30 Identities=27% Similarity=0.288 Sum_probs=22.3
Q ss_pred HHHHHHHHhcCCCeeEEEecccCCCCccccc
Q 001693 90 AKEVALAVVSGINSSVFAYGQTSSGKTYTMI 120 (1027)
Q Consensus 90 v~plV~svL~G~NatIfAYGQTGSGKTyTM~ 120 (1027)
...++..++.+. ..|+-.|.||||||.+|.
T Consensus 167 ~~~~L~~~v~~~-~~ili~G~tGsGKTTll~ 196 (340)
T TIGR03819 167 VARLLRAIVAAR-LAFLISGGTGSGKTTLLS 196 (340)
T ss_pred HHHHHHHHHhCC-CeEEEECCCCCCHHHHHH
Confidence 445666666654 678889999999998763
No 303
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=25.65 E-value=48 Score=41.98 Aligned_cols=22 Identities=27% Similarity=0.214 Sum_probs=17.3
Q ss_pred cCCCeeEEEecccCCCCccccc
Q 001693 99 SGINSSVFAYGQTSSGKTYTMI 120 (1027)
Q Consensus 99 ~G~NatIfAYGQTGSGKTyTM~ 120 (1027)
.++..-++..|+||||||.+..
T Consensus 279 ~~~~~~~Ll~~~TGSGKT~va~ 300 (681)
T PRK10917 279 SPKPMNRLLQGDVGSGKTVVAA 300 (681)
T ss_pred ccCCceEEEECCCCCcHHHHHH
Confidence 4455568999999999998764
No 304
>TIGR02746 TraC-F-type type-IV secretion system protein TraC. The protein family described here is common among the F, P and I-like type IV secretion systems. Gene symbols include TraC (F-type), TrbE/VirB4 (P-type) and TraU (I-type). The protein conyains the Walker A and B motifs and so is a putative nucleotide triphosphatase.
Probab=25.62 E-value=24 Score=45.05 Aligned_cols=21 Identities=24% Similarity=0.474 Sum_probs=16.6
Q ss_pred CeeEEEecccCCCCcccccCC
Q 001693 102 NSSVFAYGQTSSGKTYTMIGI 122 (1027)
Q Consensus 102 NatIfAYGQTGSGKTyTM~GI 122 (1027)
|..++..|.||||||++|--+
T Consensus 430 n~n~~I~G~tGsGKS~~~~~l 450 (797)
T TIGR02746 430 NYNIAVVGGSGAGKSFFMQEL 450 (797)
T ss_pred ccceEEEcCCCCCHHHHHHHH
Confidence 445677899999999998543
No 305
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=25.50 E-value=46 Score=35.23 Aligned_cols=29 Identities=24% Similarity=0.405 Sum_probs=21.3
Q ss_pred HHHHHHhc-CCC--eeEEEecccCCCCccccc
Q 001693 92 EVALAVVS-GIN--SSVFAYGQTSSGKTYTMI 120 (1027)
Q Consensus 92 plV~svL~-G~N--atIfAYGQTGSGKTyTM~ 120 (1027)
+-+|.++. |+. ..+..+|.+|||||....
T Consensus 6 ~~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~ 37 (218)
T cd01394 6 KGLDELLGGGVERGTVTQVYGPPGTGKTNIAI 37 (218)
T ss_pred hHHHHHhcCCccCCeEEEEECCCCCCHHHHHH
Confidence 44677775 443 457899999999998753
No 306
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=25.45 E-value=3e+02 Score=30.57 Aligned_cols=52 Identities=19% Similarity=0.321 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001693 358 ALVKHLQRELSRLENELRGSGPVFITPDSVSVLREKDLRIEKLEKEVDELTMQRDLARTEV 418 (1027)
Q Consensus 358 alik~Lq~Ei~~Le~eL~~~~~~~~~~~~~~~l~ek~~~i~kle~ei~eL~~q~d~a~~~~ 418 (1027)
..+.+|++|+..|..|-.. ....|+..+.-|..|+..|++++.++...+..+
T Consensus 32 ~~L~e~~kE~~~L~~Er~~---------h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i 83 (230)
T PF10146_consen 32 KCLEEYRKEMEELLQERMA---------HVEELRQINQDINTLENIIKQAESERNKRQEKI 83 (230)
T ss_pred HHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777777777765332 134455555555555555555555544444433
No 307
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=25.31 E-value=44 Score=41.32 Aligned_cols=29 Identities=24% Similarity=0.379 Sum_probs=21.5
Q ss_pred hHHHHHHHHhcCCCeeEEEecccCCCCcccc
Q 001693 89 GAKEVALAVVSGINSSVFAYGQTSSGKTYTM 119 (1027)
Q Consensus 89 ~v~plV~svL~G~NatIfAYGQTGSGKTyTM 119 (1027)
.=..++..++.|.|+ ++..+||+|||.+.
T Consensus 17 ~Q~~~i~~il~g~dv--lv~~PTG~GKTl~y 45 (591)
T TIGR01389 17 GQEEIISHVLDGRDV--LVVMPTGGGKSLCY 45 (591)
T ss_pred HHHHHHHHHHcCCCE--EEEcCCCccHhHHH
Confidence 344556677899985 55569999999875
No 308
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=25.30 E-value=29 Score=34.20 Aligned_cols=16 Identities=25% Similarity=0.326 Sum_probs=13.3
Q ss_pred eEEEecccCCCCcccc
Q 001693 104 SVFAYGQTSSGKTYTM 119 (1027)
Q Consensus 104 tIfAYGQTGSGKTyTM 119 (1027)
+|+.+|..|||||+..
T Consensus 1 ~i~l~G~~GsGKstla 16 (154)
T cd00464 1 NIVLIGMMGAGKTTVG 16 (154)
T ss_pred CEEEEcCCCCCHHHHH
Confidence 4788999999998764
No 309
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=25.23 E-value=39 Score=41.72 Aligned_cols=45 Identities=18% Similarity=0.302 Sum_probs=29.7
Q ss_pred eeecceeeCCCCChhhHHHhhHHHHHHHHhcCCCeeEEEecccCCCCcccc
Q 001693 69 SYTFDRVFSCDCTTRKVYEEGAKEVALAVVSGINSSVFAYGQTSSGKTYTM 119 (1027)
Q Consensus 69 sF~FD~VF~~~asQeeVYe~~v~plV~svL~G~NatIfAYGQTGSGKTyTM 119 (1027)
.|.||.+++.+..-+.+.+. +.. +...+..|+-+|.+||||++.-
T Consensus 215 ~~~f~~iiG~S~~m~~~~~~-----i~~-~A~s~~pVLI~GE~GTGKe~~A 259 (538)
T PRK15424 215 RYVLGDLLGQSPQMEQVRQT-----ILL-YARSSAAVLIQGETGTGKELAA 259 (538)
T ss_pred ccchhheeeCCHHHHHHHHH-----HHH-HhCCCCcEEEECCCCCCHHHHH
Confidence 46788887755433333332 222 3567889999999999997653
No 310
>TIGR03744 traC_PFL_4706 conjugative transfer ATPase, PFL_4706 family. Members of this protein family are predicted ATP-binding proteins apparently associated with DNA conjugal transfer. Members are found both in plasmids and in bacterial chromosomal regions that appear to derive from integrative elements such as conjugative transposons. More distant homologs, outside the scope of this family, include type IV secretion/conjugal transfer proteins such as TraC, VirB4 and TrsE. The granularity of this protein family definition is chosen so as to represent one distinctive clade and act as a marker through which to define and recognize the class of mobile element it serves.
Probab=25.21 E-value=24 Score=46.02 Aligned_cols=24 Identities=25% Similarity=0.414 Sum_probs=19.2
Q ss_pred CCeeEEEecccCCCCcccccCChh
Q 001693 101 INSSVFAYGQTSSGKTYTMIGITE 124 (1027)
Q Consensus 101 ~NatIfAYGQTGSGKTyTM~GIi~ 124 (1027)
-|+-.+..|.||||||++|-.++.
T Consensus 474 ~n~n~~I~G~TGSGKS~l~~~li~ 497 (893)
T TIGR03744 474 KNAHLLILGPTGAGKSATLTNLLM 497 (893)
T ss_pred CcccEEEECCCCCCHHHHHHHHHH
Confidence 477778899999999999865433
No 311
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=25.10 E-value=29 Score=39.28 Aligned_cols=13 Identities=46% Similarity=0.624 Sum_probs=11.7
Q ss_pred EecccCCCCcccc
Q 001693 107 AYGQTSSGKTYTM 119 (1027)
Q Consensus 107 AYGQTGSGKTyTM 119 (1027)
-.|++|||||+||
T Consensus 32 liGpSGsGKTTtL 44 (309)
T COG1125 32 LIGPSGSGKTTTL 44 (309)
T ss_pred EECCCCCcHHHHH
Confidence 4699999999998
No 312
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=25.09 E-value=53 Score=35.01 Aligned_cols=30 Identities=23% Similarity=0.298 Sum_probs=22.2
Q ss_pred HHHHHHHhcCC---CeeEEEecccCCCCccccc
Q 001693 91 KEVALAVVSGI---NSSVFAYGQTSSGKTYTMI 120 (1027)
Q Consensus 91 ~plV~svL~G~---NatIfAYGQTGSGKTyTM~ 120 (1027)
-+-+|.++.|- ...+.-||.+|+|||....
T Consensus 9 i~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~ 41 (225)
T PRK09361 9 CKMLDELLGGGFERGTITQIYGPPGSGKTNICL 41 (225)
T ss_pred cHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHH
Confidence 34567777543 4567899999999998763
No 313
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=25.08 E-value=45 Score=38.09 Aligned_cols=24 Identities=29% Similarity=0.468 Sum_probs=21.3
Q ss_pred HHhcCCCeeEEEecccCCCCcccc
Q 001693 96 AVVSGINSSVFAYGQTSSGKTYTM 119 (1027)
Q Consensus 96 svL~G~NatIfAYGQTGSGKTyTM 119 (1027)
++-+||.--|++.|.||.|||..|
T Consensus 36 sv~~GF~FNilCvGETg~GKsTLm 59 (406)
T KOG3859|consen 36 SVSQGFCFNILCVGETGLGKSTLM 59 (406)
T ss_pred HHhcCceEEEEEeccCCccHHHHH
Confidence 455899999999999999999765
No 314
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=25.04 E-value=2.4e+02 Score=31.22 Aligned_cols=60 Identities=20% Similarity=0.233 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 001693 362 HLQRELSRLENELRGSGPVFITPDSVSVLREKDLRIEKLEKEVDELTMQRDLARTEVENLLRGAGK 427 (1027)
Q Consensus 362 ~Lq~Ei~~Le~eL~~~~~~~~~~~~~~~l~ek~~~i~kle~ei~eL~~q~d~a~~~~~~l~~~~~~ 427 (1027)
.++++...++..+...+. ..+......+...++++++++....++.++.....|.+...+
T Consensus 131 ~~~~~~~~lk~~~~~~~~------~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~ 190 (216)
T KOG1962|consen 131 KAMKENEALKKQLENSSK------LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEG 190 (216)
T ss_pred HHHHHHHHHHHhhhcccc------hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566655555432 111122223334445555555555555555555555444433
No 315
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=24.88 E-value=52 Score=42.00 Aligned_cols=27 Identities=30% Similarity=0.442 Sum_probs=21.9
Q ss_pred HHHHHHHHhcCCCeeEEEecccCCCCcccc
Q 001693 90 AKEVALAVVSGINSSVFAYGQTSSGKTYTM 119 (1027)
Q Consensus 90 v~plV~svL~G~NatIfAYGQTGSGKTyTM 119 (1027)
-..++..+| |.|..|.+ +||+|||+.-
T Consensus 67 Q~eivq~AL-gkNtii~l--PTG~GKTfIA 93 (746)
T KOG0354|consen 67 QEELVQPAL-GKNTIIAL--PTGSGKTFIA 93 (746)
T ss_pred HHHHhHHhh-cCCeEEEe--ecCCCccchH
Confidence 456788888 99987766 9999999863
No 316
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=24.72 E-value=29 Score=42.24 Aligned_cols=19 Identities=32% Similarity=0.256 Sum_probs=15.9
Q ss_pred eeEEEecccCCCCcccccC
Q 001693 103 SSVFAYGQTSSGKTYTMIG 121 (1027)
Q Consensus 103 atIfAYGQTGSGKTyTM~G 121 (1027)
..|.-.|++|+|||+|+.-
T Consensus 257 ~Vi~LvGpnGvGKTTTiaK 275 (484)
T PRK06995 257 GVFALMGPTGVGKTTTTAK 275 (484)
T ss_pred cEEEEECCCCccHHHHHHH
Confidence 4677889999999999843
No 317
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=24.66 E-value=31 Score=35.44 Aligned_cols=15 Identities=27% Similarity=0.426 Sum_probs=12.9
Q ss_pred EEEecccCCCCcccc
Q 001693 105 VFAYGQTSSGKTYTM 119 (1027)
Q Consensus 105 IfAYGQTGSGKTyTM 119 (1027)
|+.+|..|||||+..
T Consensus 2 I~i~G~pGsGKst~a 16 (194)
T cd01428 2 ILLLGPPGSGKGTQA 16 (194)
T ss_pred EEEECCCCCCHHHHH
Confidence 788999999998654
No 318
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=24.60 E-value=2e+02 Score=34.40 Aligned_cols=23 Identities=30% Similarity=0.414 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCC
Q 001693 356 DKALVKHLQRELSRLENELRGSG 378 (1027)
Q Consensus 356 ~kalik~Lq~Ei~~Le~eL~~~~ 378 (1027)
.+..|+.|+.||.+|+..|....
T Consensus 251 ~~~hi~~l~~EveRlrt~l~~Aq 273 (552)
T KOG2129|consen 251 EKLHIDKLQAEVERLRTYLSRAQ 273 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34668889999999999987653
No 319
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=24.54 E-value=2.9e+02 Score=31.55 Aligned_cols=23 Identities=39% Similarity=0.501 Sum_probs=18.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHhcC
Q 001693 355 SDKALVKHLQRELSRLENELRGS 377 (1027)
Q Consensus 355 s~kalik~Lq~Ei~~Le~eL~~~ 377 (1027)
+.+..+..|..++.+++.+|...
T Consensus 106 s~Kkqie~Leqelkr~KsELErs 128 (307)
T PF10481_consen 106 SCKKQIEKLEQELKRCKSELERS 128 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567888999999999988653
No 320
>cd01379 MYSc_type_III Myosin motor domain, type III myosins. Myosin III has been shown to play a role in the vision process in insects and in hearing in mammals. Myosin III, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the
Probab=24.43 E-value=62 Score=40.95 Aligned_cols=35 Identities=20% Similarity=0.325 Sum_probs=25.8
Q ss_pred hHHHhhHHHHHHHHh-cCCCeeEEEecccCCCCcccc
Q 001693 84 KVYEEGAKEVALAVV-SGINSSVFAYGQTSSGKTYTM 119 (1027)
Q Consensus 84 eVYe~~v~plV~svL-~G~NatIfAYGQTGSGKTyTM 119 (1027)
.||.- +......++ .|.|-||+.-|.+|||||.|+
T Consensus 68 Hifav-A~~Ay~~m~~~~~~QsIiisGESGsGKTet~ 103 (653)
T cd01379 68 HIFAI-ADAAYQSLVTYNQDQCIVISGESGSGKTESA 103 (653)
T ss_pred cHHHH-HHHHHHHHHhcCCCceEEEecCCCCCchHHH
Confidence 46653 333333443 589999999999999999997
No 321
>PRK08118 topology modulation protein; Reviewed
Probab=24.19 E-value=32 Score=35.56 Aligned_cols=14 Identities=29% Similarity=0.444 Sum_probs=12.1
Q ss_pred EEEecccCCCCccc
Q 001693 105 VFAYGQTSSGKTYT 118 (1027)
Q Consensus 105 IfAYGQTGSGKTyT 118 (1027)
|+..|+.|||||+.
T Consensus 4 I~I~G~~GsGKSTl 17 (167)
T PRK08118 4 IILIGSGGSGKSTL 17 (167)
T ss_pred EEEECCCCCCHHHH
Confidence 78899999999953
No 322
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=24.17 E-value=39 Score=41.59 Aligned_cols=46 Identities=17% Similarity=0.336 Sum_probs=30.8
Q ss_pred ceeecceeeCCCCChhhHHHhhHHHHHHHHhcCCCeeEEEecccCCCCcccc
Q 001693 68 TSYTFDRVFSCDCTTRKVYEEGAKEVALAVVSGINSSVFAYGQTSSGKTYTM 119 (1027)
Q Consensus 68 ~sF~FD~VF~~~asQeeVYe~~v~plV~svL~G~NatIfAYGQTGSGKTyTM 119 (1027)
..|.||.+++.+..-+.+.+. +.. +...+..|+-+|.+||||++.-
T Consensus 207 ~~~~f~~iiG~S~~m~~~~~~-----i~~-~A~~~~pVLI~GE~GTGKe~lA 252 (526)
T TIGR02329 207 TRYRLDDLLGASAPMEQVRAL-----VRL-YARSDATVLILGESGTGKELVA 252 (526)
T ss_pred cccchhheeeCCHHHHHHHHH-----HHH-HhCCCCcEEEECCCCcCHHHHH
Confidence 348888888865433333332 222 3567889999999999997653
No 323
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=23.81 E-value=54 Score=34.72 Aligned_cols=30 Identities=23% Similarity=0.329 Sum_probs=22.1
Q ss_pred HHHHHHHhcC-C--CeeEEEecccCCCCccccc
Q 001693 91 KEVALAVVSG-I--NSSVFAYGQTSSGKTYTMI 120 (1027)
Q Consensus 91 ~plV~svL~G-~--NatIfAYGQTGSGKTyTM~ 120 (1027)
-+-+|.++.| + ...+.-+|++|+|||..+.
T Consensus 5 ~~~lD~~l~GG~~~g~v~~I~G~~GsGKT~l~~ 37 (226)
T cd01393 5 SKALDELLGGGIPTGRITEIFGEFGSGKTQLCL 37 (226)
T ss_pred cHHHHHHhCCCCcCCcEEEEeCCCCCChhHHHH
Confidence 3556777754 3 4567789999999998764
No 324
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=23.79 E-value=3.3e+02 Score=27.89 Aligned_cols=32 Identities=28% Similarity=0.370 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001693 394 DLRIEKLEKEVDELTMQRDLARTEVENLLRGA 425 (1027)
Q Consensus 394 ~~~i~kle~ei~eL~~q~d~a~~~~~~l~~~~ 425 (1027)
..++++|..|+..+..++|.++..++.|..-+
T Consensus 87 ~qqv~~L~~e~s~~~~E~da~k~k~e~l~~~~ 118 (135)
T KOG4196|consen 87 QQQVEKLKEENSRLRRELDAYKSKYEALQNSA 118 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 45567778888888888888888887776554
No 325
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=23.71 E-value=1.7e+02 Score=32.98 Aligned_cols=83 Identities=17% Similarity=0.155 Sum_probs=46.1
Q ss_pred eeeecCCCCcchHHHHHHHHHHHHhhcccccceeccccCHHHHHHHHHHHHHHHHHHHhcCCCCCCCcch--------hH
Q 001693 317 IICTLSPARSHVEQSRNTLLFASCAKEVTTNAQVNIVMSDKALVKHLQRELSRLENELRGSGPVFITPDS--------VS 388 (1027)
Q Consensus 317 mIatISPs~~~~eETlsTLrFAsRAK~Ikn~~~vN~~~s~kalik~Lq~Ei~~Le~eL~~~~~~~~~~~~--------~~ 388 (1027)
.||.+.|.. .+.+-+..|+.-- .....-+..|+.+|+..+.+|..........+. ..
T Consensus 168 ~L~~vYP~~-ga~eki~~Lr~~y--------------~~l~~~i~~lE~~VaeQ~~qL~~~n~~~~~~~~~~~~~~~~~~ 232 (259)
T PF08657_consen 168 KLCNVYPLP-GAREKIAALRQRY--------------NQLSNSIAYLEAEVAEQEAQLERMNRSSSDSSSDDEESEESSE 232 (259)
T ss_pred HHHHhCCCh-HHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccccccccc
Confidence 467777766 4555566664321 012234677888888888877655332211111 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001693 389 VLREKDLRIEKLEKEVDELTMQRDLA 414 (1027)
Q Consensus 389 ~l~ek~~~i~kle~ei~eL~~q~d~a 414 (1027)
...-.+.-|++-++||++|+.++..+
T Consensus 233 ~~~~~de~I~rEeeEIreLE~k~~~L 258 (259)
T PF08657_consen 233 DSVDTDEDIRREEEEIRELERKKREL 258 (259)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHhc
Confidence 11234455777777788877776654
No 326
>cd01386 MYSc_type_XVIII Myosin motor domain, type XVIII myosins. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the
Probab=23.62 E-value=63 Score=41.65 Aligned_cols=35 Identities=23% Similarity=0.392 Sum_probs=26.2
Q ss_pred hHHHhhHHHHHHHHh-cCCCeeEEEecccCCCCcccc
Q 001693 84 KVYEEGAKEVALAVV-SGINSSVFAYGQTSSGKTYTM 119 (1027)
Q Consensus 84 eVYe~~v~plV~svL-~G~NatIfAYGQTGSGKTyTM 119 (1027)
.||.- +.....+++ .|.|-||+.-|.+|||||.|.
T Consensus 68 Hifai-A~~Ay~~m~~~~~~QsIiiSGESGAGKTe~t 103 (767)
T cd01386 68 HIYSL-AQTAYRALLETRRDQSIIFLGRSGAGKTTSC 103 (767)
T ss_pred CHHHH-HHHHHHHHHHcCCCceEEEecCCCCCcHHHH
Confidence 46654 333344444 599999999999999999986
No 327
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=23.43 E-value=3.7e+02 Score=28.51 Aligned_cols=34 Identities=24% Similarity=0.291 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 001693 393 KDLRIEKLEKEVDELTMQRDLARTEVENLLRGAG 426 (1027)
Q Consensus 393 k~~~i~kle~ei~eL~~q~d~a~~~~~~l~~~~~ 426 (1027)
...+++.|++++..|..+....++..+.|...+.
T Consensus 116 l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~ 149 (161)
T TIGR02894 116 LQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMD 149 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666777777777777777777776666554
No 328
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=23.18 E-value=48 Score=41.33 Aligned_cols=27 Identities=33% Similarity=0.373 Sum_probs=19.7
Q ss_pred HHHHHHHhcCCCeeEEEecccCCCCcccc
Q 001693 91 KEVALAVVSGINSSVFAYGQTSSGKTYTM 119 (1027)
Q Consensus 91 ~plV~svL~G~NatIfAYGQTGSGKTyTM 119 (1027)
..++..++.|.++.+ .++||+|||.+.
T Consensus 31 ~~ai~~il~g~dvlv--~apTGsGKTl~y 57 (607)
T PRK11057 31 QEIIDAVLSGRDCLV--VMPTGGGKSLCY 57 (607)
T ss_pred HHHHHHHHcCCCEEE--EcCCCchHHHHH
Confidence 345556778988654 569999999753
No 329
>PRK13767 ATP-dependent helicase; Provisional
Probab=23.16 E-value=46 Score=43.41 Aligned_cols=24 Identities=29% Similarity=0.292 Sum_probs=18.1
Q ss_pred HHHHhcCCCeeEEEecccCCCCcccc
Q 001693 94 ALAVVSGINSSVFAYGQTSSGKTYTM 119 (1027)
Q Consensus 94 V~svL~G~NatIfAYGQTGSGKTyTM 119 (1027)
+..+++|.|+.| ..+||||||.+.
T Consensus 41 i~~il~g~nvli--~APTGSGKTlaa 64 (876)
T PRK13767 41 IPLIHEGKNVLI--SSPTGSGKTLAA 64 (876)
T ss_pred HHHHHcCCCEEE--ECCCCCcHHHHH
Confidence 344578998655 459999999875
No 330
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=23.14 E-value=29 Score=39.73 Aligned_cols=18 Identities=39% Similarity=0.475 Sum_probs=15.3
Q ss_pred eeEEEecccCCCCccccc
Q 001693 103 SSVFAYGQTSSGKTYTMI 120 (1027)
Q Consensus 103 atIfAYGQTGSGKTyTM~ 120 (1027)
.+|+-.|.||||||+.|.
T Consensus 144 ~siii~G~t~sGKTt~ln 161 (312)
T COG0630 144 KSIIICGGTASGKTTLLN 161 (312)
T ss_pred CcEEEECCCCCCHHHHHH
Confidence 457888999999999984
No 331
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.14 E-value=5.6e+02 Score=23.79 Aligned_cols=33 Identities=18% Similarity=0.174 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 001693 397 IEKLEKEVDELTMQRDLARTEVENLLRGAGKGS 429 (1027)
Q Consensus 397 i~kle~ei~eL~~q~d~a~~~~~~l~~~~~~~~ 429 (1027)
|+.|-..+.+.+.-.++++.++.-|..++.+-+
T Consensus 24 ieeLn~~laEq~~~i~k~q~qlr~L~~kl~~~~ 56 (72)
T COG2900 24 IEELNDALAEQQLVIDKLQAQLRLLTEKLKDLQ 56 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 444444455555555555555555555555444
No 332
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=23.08 E-value=4.5e+02 Score=24.86 Aligned_cols=29 Identities=24% Similarity=0.079 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001693 389 VLREKDLRIEKLEKEVDELTMQRDLARTE 417 (1027)
Q Consensus 389 ~l~ek~~~i~kle~ei~eL~~q~d~a~~~ 417 (1027)
..++.-.+|..+|.+|..|..+...+..+
T Consensus 55 ~~keLL~EIA~lE~eV~~LE~~v~~L~~~ 83 (88)
T PF14389_consen 55 KAKELLEEIALLEAEVAKLEQKVLSLYRQ 83 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445666666666666655554443
No 333
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=22.98 E-value=33 Score=35.15 Aligned_cols=16 Identities=19% Similarity=0.499 Sum_probs=13.9
Q ss_pred eEEEecccCCCCcccc
Q 001693 104 SVFAYGQTSSGKTYTM 119 (1027)
Q Consensus 104 tIfAYGQTGSGKTyTM 119 (1027)
.|+..|++|||||..+
T Consensus 3 ~~~i~G~sGsGKttl~ 18 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLL 18 (179)
T ss_pred EEEEECCCCCCHHHHH
Confidence 5678899999999876
No 334
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=22.96 E-value=7.1e+02 Score=30.05 Aligned_cols=149 Identities=19% Similarity=0.163 Sum_probs=77.7
Q ss_pred hhHHHHHHHHHHhcCCCCCccccCCc----hhhhhhhhcc----CCCccceeeeecCCCCcchHHHHHHHH--HHHHhhc
Q 001693 274 RSLLTLGTVIRKLSKGRNGHVPFRDS----KLTRILQSSL----GGNARTAIICTLSPARSHVEQSRNTLL--FASCAKE 343 (1027)
Q Consensus 274 kSL~aLg~VI~aLs~~k~~hIPYRDS----KLTrLLqdSL----GGNskT~mIatISPs~~~~eETlsTLr--FAsRAK~ 343 (1027)
+|-..+..|+..+.-... |.+. ++..-|++.| .|++..+=|..-+|++.-...-.+++- |-..-..
T Consensus 78 ~Sr~v~~~vi~~l~l~~~----~~~~~~~~~~~~~l~~~l~v~~~~~s~vi~Is~~~~dP~~Aa~i~n~l~~~yi~~~~~ 153 (498)
T TIGR03007 78 LSRPNLEKVIRMLDLDLG----AKSPAQLEALITKLRKNISISLAGRDNLFTISYEDKDPELAKDVVQTLLTIFVEETLG 153 (498)
T ss_pred hChHHHHHHHHHcCCCcc----cCCHHHHHHHHHHHHhCcEEeecCCCCeEEEEeeCCCHHHHHHHHHHHHHHHHHhhcc
Confidence 566777888887743211 1221 1233445554 445666666667788777777777652 2211111
Q ss_pred ccccceeccccCHHHHHHHHHHHHHHHHHHHhcCCC--CCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001693 344 VTTNAQVNIVMSDKALVKHLQRELSRLENELRGSGP--VFITPDSVSVLREKDLRIEKLEKEVDELTMQRDLARTEVENL 421 (1027)
Q Consensus 344 Ikn~~~vN~~~s~kalik~Lq~Ei~~Le~eL~~~~~--~~~~~~~~~~l~ek~~~i~kle~ei~eL~~q~d~a~~~~~~l 421 (1027)
.+.........-....+..++.++...+.+|..... ....++.. .....++..++.++.+++.++..++.++..+
T Consensus 154 ~~~~~~~~~~~fl~~ql~~~~~~L~~ae~~l~~f~~~~~~~~~~~~---~~~~~~l~~l~~~l~~~~~~l~~~~a~~~~l 230 (498)
T TIGR03007 154 SKRQDSDSAQRFIDEQIKTYEKKLEAAENRLKAFKQENGGILPDQE---GDYYSEISEAQEELEAARLELNEAIAQRDAL 230 (498)
T ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCccch---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111000000000011234455555555544433211 11111111 2234567888888999999999999999988
Q ss_pred HHHhcCCC
Q 001693 422 LRGAGKGS 429 (1027)
Q Consensus 422 ~~~~~~~~ 429 (1027)
.+.++...
T Consensus 231 ~~~l~~~~ 238 (498)
T TIGR03007 231 KRQLGGEE 238 (498)
T ss_pred HHHhccCC
Confidence 88877554
No 335
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=22.91 E-value=28 Score=35.02 Aligned_cols=14 Identities=29% Similarity=0.380 Sum_probs=11.0
Q ss_pred EEEecccCCCCccc
Q 001693 105 VFAYGQTSSGKTYT 118 (1027)
Q Consensus 105 IfAYGQTGSGKTyT 118 (1027)
|+..|.+|||||+.
T Consensus 1 i~l~G~~GsGKSTl 14 (163)
T TIGR01313 1 FVLMGVAGSGKSTI 14 (163)
T ss_pred CEEECCCCCCHHHH
Confidence 35679999999854
No 336
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=22.88 E-value=36 Score=33.11 Aligned_cols=15 Identities=27% Similarity=0.346 Sum_probs=12.5
Q ss_pred EEEecccCCCCcccc
Q 001693 105 VFAYGQTSSGKTYTM 119 (1027)
Q Consensus 105 IfAYGQTGSGKTyTM 119 (1027)
|+-.|++|||||+.-
T Consensus 2 I~i~G~~GsGKst~a 16 (147)
T cd02020 2 IAIDGPAGSGKSTVA 16 (147)
T ss_pred EEEECCCCCCHHHHH
Confidence 577899999998753
No 337
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=22.80 E-value=33 Score=37.90 Aligned_cols=15 Identities=33% Similarity=0.521 Sum_probs=12.3
Q ss_pred EEEecccCCCCcccc
Q 001693 105 VFAYGQTSSGKTYTM 119 (1027)
Q Consensus 105 IfAYGQTGSGKTyTM 119 (1027)
+.-.|++|||||+.+
T Consensus 31 v~iiGpSGSGKSTlL 45 (240)
T COG1126 31 VVIIGPSGSGKSTLL 45 (240)
T ss_pred EEEECCCCCCHHHHH
Confidence 345799999999876
No 338
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=22.80 E-value=2.9e+02 Score=32.76 Aligned_cols=23 Identities=22% Similarity=0.443 Sum_probs=20.0
Q ss_pred HhcCCCeeEEEecccCCCCcccc
Q 001693 97 VVSGINSSVFAYGQTSSGKTYTM 119 (1027)
Q Consensus 97 vL~G~NatIfAYGQTGSGKTyTM 119 (1027)
+-.|+.-+|++.|+.|+|||.-+
T Consensus 16 ~KkG~~ftlmvvG~sGlGKsTfi 38 (366)
T KOG2655|consen 16 VKKGFDFTLMVVGESGLGKSTFI 38 (366)
T ss_pred HhcCCceEEEEecCCCccHHHHH
Confidence 34899999999999999998753
No 339
>PRK09039 hypothetical protein; Validated
Probab=22.76 E-value=2.9e+02 Score=32.33 Aligned_cols=18 Identities=22% Similarity=0.420 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHhc
Q 001693 359 LVKHLQRELSRLENELRG 376 (1027)
Q Consensus 359 lik~Lq~Ei~~Le~eL~~ 376 (1027)
.+..|+.+|+.|+.+|..
T Consensus 138 ~V~~L~~qI~aLr~Qla~ 155 (343)
T PRK09039 138 QVELLNQQIAALRRQLAA 155 (343)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 355566666666665433
No 340
>PRK10884 SH3 domain-containing protein; Provisional
Probab=22.73 E-value=3.2e+02 Score=29.84 Aligned_cols=32 Identities=16% Similarity=0.130 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001693 392 EKDLRIEKLEKEVDELTMQRDLARTEVENLLR 423 (1027)
Q Consensus 392 ek~~~i~kle~ei~eL~~q~d~a~~~~~~l~~ 423 (1027)
+.+.+.++|.+++..++.+++.++.+++.+.+
T Consensus 136 ~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~ 167 (206)
T PRK10884 136 GLKEENQKLKNQLIVAQKKVDAANLQLDDKQR 167 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666677777777777777777666654
No 341
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=22.72 E-value=35 Score=30.03 Aligned_cols=17 Identities=24% Similarity=0.311 Sum_probs=13.2
Q ss_pred EEEecccCCCCcccccC
Q 001693 105 VFAYGQTSSGKTYTMIG 121 (1027)
Q Consensus 105 IfAYGQTGSGKTyTM~G 121 (1027)
++.+|..|+|||++...
T Consensus 2 ~~~~g~~G~Gktt~~~~ 18 (99)
T cd01983 2 IVVTGKGGVGKTTLAAN 18 (99)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 56678889999998643
No 342
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=22.62 E-value=32 Score=38.71 Aligned_cols=16 Identities=25% Similarity=0.281 Sum_probs=14.0
Q ss_pred eEEEecccCCCCcccc
Q 001693 104 SVFAYGQTSSGKTYTM 119 (1027)
Q Consensus 104 tIfAYGQTGSGKTyTM 119 (1027)
-|+-+|++|+|||+..
T Consensus 60 ~vll~G~pGTGKT~lA 75 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVA 75 (284)
T ss_pred eEEEEcCCCCCHHHHH
Confidence 5888999999999875
No 343
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=22.61 E-value=55 Score=34.95 Aligned_cols=29 Identities=28% Similarity=0.287 Sum_probs=21.3
Q ss_pred HHHHHHhc-CC--CeeEEEecccCCCCccccc
Q 001693 92 EVALAVVS-GI--NSSVFAYGQTSSGKTYTMI 120 (1027)
Q Consensus 92 plV~svL~-G~--NatIfAYGQTGSGKTyTM~ 120 (1027)
+-+|.++. |+ ..++..+|++|+|||+...
T Consensus 7 ~~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~ 38 (229)
T TIGR03881 7 EGLDKLLEGGIPRGFFVAVTGEPGTGKTIFCL 38 (229)
T ss_pred hhHHHhhcCCCcCCeEEEEECCCCCChHHHHH
Confidence 34566664 54 5678889999999998653
No 344
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=22.58 E-value=87 Score=41.35 Aligned_cols=12 Identities=42% Similarity=0.678 Sum_probs=10.3
Q ss_pred ccCCCCcccccC
Q 001693 110 QTSSGKTYTMIG 121 (1027)
Q Consensus 110 QTGSGKTyTM~G 121 (1027)
.|||||||||.+
T Consensus 67 ~TGtGKT~~~~~ 78 (986)
T PRK15483 67 ETGTGKTYVYTR 78 (986)
T ss_pred CCCCCHHHHHHH
Confidence 799999998754
No 345
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=22.49 E-value=59 Score=42.15 Aligned_cols=32 Identities=22% Similarity=0.185 Sum_probs=21.9
Q ss_pred HHHhhHHHHHHHHhcCCCeeEEEecccCCCCcccc
Q 001693 85 VYEEGAKEVALAVVSGINSSVFAYGQTSSGKTYTM 119 (1027)
Q Consensus 85 VYe~~v~plV~svL~G~NatIfAYGQTGSGKTyTM 119 (1027)
||.. ...+++.+-++- .|+..|+||||||..+
T Consensus 6 i~~~-~~~i~~~l~~~~--~vvv~A~TGSGKTt~~ 37 (812)
T PRK11664 6 VAAV-LPELLTALKTAP--QVLLKAPTGAGKSTWL 37 (812)
T ss_pred HHHH-HHHHHHHHHhCC--CEEEEcCCCCCHHHHH
Confidence 4442 455666554443 4677999999999886
No 346
>CHL00181 cbbX CbbX; Provisional
Probab=22.44 E-value=34 Score=38.66 Aligned_cols=15 Identities=27% Similarity=0.293 Sum_probs=13.4
Q ss_pred EEEecccCCCCcccc
Q 001693 105 VFAYGQTSSGKTYTM 119 (1027)
Q Consensus 105 IfAYGQTGSGKTyTM 119 (1027)
|+-||++|+|||+..
T Consensus 62 ill~G~pGtGKT~lA 76 (287)
T CHL00181 62 MSFTGSPGTGKTTVA 76 (287)
T ss_pred EEEECCCCCCHHHHH
Confidence 677999999999875
No 347
>PRK08233 hypothetical protein; Provisional
Probab=22.42 E-value=35 Score=34.61 Aligned_cols=16 Identities=19% Similarity=0.125 Sum_probs=12.6
Q ss_pred eEEEecccCCCCcccc
Q 001693 104 SVFAYGQTSSGKTYTM 119 (1027)
Q Consensus 104 tIfAYGQTGSGKTyTM 119 (1027)
.|+--|++|||||+..
T Consensus 5 iI~I~G~~GsGKtTla 20 (182)
T PRK08233 5 IITIAAVSGGGKTTLT 20 (182)
T ss_pred EEEEECCCCCCHHHHH
Confidence 3555799999999865
No 348
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=22.38 E-value=37 Score=34.55 Aligned_cols=15 Identities=27% Similarity=0.313 Sum_probs=13.0
Q ss_pred EEEecccCCCCcccc
Q 001693 105 VFAYGQTSSGKTYTM 119 (1027)
Q Consensus 105 IfAYGQTGSGKTyTM 119 (1027)
++.+|.+|+|||...
T Consensus 2 ~li~G~~G~GKT~l~ 16 (187)
T cd01124 2 TLLSGGPGTGKTTFA 16 (187)
T ss_pred EEEEcCCCCCHHHHH
Confidence 678999999999865
No 349
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=22.23 E-value=4.6e+02 Score=26.52 Aligned_cols=42 Identities=24% Similarity=0.267 Sum_probs=31.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 001693 387 VSVLREKDLRIEKLEKEVDELTMQRDLARTEVENLLRGAGKG 428 (1027)
Q Consensus 387 ~~~l~ek~~~i~kle~ei~eL~~q~d~a~~~~~~l~~~~~~~ 428 (1027)
..+..+.+.+++-++..++.|++|-+.++++++.|..++.+-
T Consensus 69 ~~~~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~~ 110 (119)
T COG1382 69 EEAVDELEERKETLELRIKTLEKQEEKLQERLEELQSEIQKA 110 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666677778888888888888888888888877776553
No 350
>PHA02624 large T antigen; Provisional
Probab=22.09 E-value=47 Score=41.67 Aligned_cols=30 Identities=20% Similarity=0.240 Sum_probs=23.4
Q ss_pred HHHHHHhcCCCe--eEEEecccCCCCcccccC
Q 001693 92 EVALAVVSGINS--SVFAYGQTSSGKTYTMIG 121 (1027)
Q Consensus 92 plV~svL~G~Na--tIfAYGQTGSGKTyTM~G 121 (1027)
.++..++.|.-. ||+-||+.|||||+-..+
T Consensus 419 ~~lk~~l~giPKk~~il~~GPpnTGKTtf~~s 450 (647)
T PHA02624 419 DILKLIVENVPKRRYWLFKGPVNSGKTTLAAA 450 (647)
T ss_pred HHHHHHHhcCCCCeEEEEECCCCCCHHHHHHH
Confidence 346667777766 999999999999986543
No 351
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=21.98 E-value=75 Score=34.74 Aligned_cols=30 Identities=17% Similarity=0.052 Sum_probs=23.0
Q ss_pred HHHHHHHHhc--CCCeeEEEecccCCCCcccc
Q 001693 90 AKEVALAVVS--GINSSVFAYGQTSSGKTYTM 119 (1027)
Q Consensus 90 v~plV~svL~--G~NatIfAYGQTGSGKTyTM 119 (1027)
+..+.+.+.+ .-...|.-||..|+|||...
T Consensus 5 ~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA 36 (287)
T PF00931_consen 5 IEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLA 36 (287)
T ss_dssp HHHHHHHHHTTTTSSEEEEEEESTTSSHHHHH
T ss_pred HHHHHHHhhCCCCCeEEEEEEcCCcCCcceee
Confidence 4556666666 66778899999999999764
No 352
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=21.91 E-value=34 Score=40.74 Aligned_cols=21 Identities=33% Similarity=0.430 Sum_probs=16.9
Q ss_pred eeEEEecccCCCCcccccCCh
Q 001693 103 SSVFAYGQTSSGKTYTMIGIT 123 (1027)
Q Consensus 103 atIfAYGQTGSGKTyTM~GIi 123 (1027)
-.|+-.|++|+|||+|+..+.
T Consensus 207 ~ii~lvGptGvGKTTt~akLA 227 (407)
T PRK12726 207 RIISLIGQTGVGKTTTLVKLG 227 (407)
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 356788999999999986543
No 353
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=21.90 E-value=92 Score=35.59 Aligned_cols=33 Identities=12% Similarity=0.313 Sum_probs=24.4
Q ss_pred eEEEecccCCCCccccc-----------CChhhHHHHHHHHHHh
Q 001693 104 SVFAYGQTSSGKTYTMI-----------GITEYTMSDIYDYIEK 136 (1027)
Q Consensus 104 tIfAYGQTGSGKTyTM~-----------GIi~rav~dLF~~Ie~ 136 (1027)
.|+.-|.+|||||..|- .+.|..+..+.+.+..
T Consensus 3 ~vIiTGlSGaGKs~Al~~lED~Gy~cvDNlP~~Ll~~l~~~~~~ 46 (284)
T PF03668_consen 3 LVIITGLSGAGKSTALRALEDLGYYCVDNLPPSLLPQLIELLAQ 46 (284)
T ss_pred EEEEeCCCcCCHHHHHHHHHhcCeeEEcCCcHHHHHHHHHHHHh
Confidence 46778999999999994 3666667766666553
No 354
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=21.85 E-value=4.5e+02 Score=25.11 Aligned_cols=53 Identities=25% Similarity=0.278 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001693 359 LVKHLQRELSRLENELRGSGPVFITPDSVSVLREKDLRIEKLEKEVDELTMQRDLARTEVENLLRG 424 (1027)
Q Consensus 359 lik~Lq~Ei~~Le~eL~~~~~~~~~~~~~~~l~ek~~~i~kle~ei~eL~~q~d~a~~~~~~l~~~ 424 (1027)
.+.+++..+...+..|+..... ...-+.+++|+..+..++.....++..|.+.
T Consensus 13 kl~~cr~~le~ve~rL~~~eLs-------------~e~R~~lE~E~~~l~~~l~~~E~eL~~LrkE 65 (85)
T PF15188_consen 13 KLAQCRRRLEAVESRLRRRELS-------------PEARRSLEKELNELKEKLENNEKELKLLRKE 65 (85)
T ss_pred HHHHHHHHHHHHHHHHcccCCC-------------hHHHHHHHHHHHHHHHHhhccHHHHHHHHHh
Confidence 4555566666666666655422 1234557788888888888888888877763
No 355
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=21.84 E-value=51 Score=42.23 Aligned_cols=27 Identities=26% Similarity=0.240 Sum_probs=20.2
Q ss_pred HHHHHHHhcCCCeeEEEecccCCCCcccc
Q 001693 91 KEVALAVVSGINSSVFAYGQTSSGKTYTM 119 (1027)
Q Consensus 91 ~plV~svL~G~NatIfAYGQTGSGKTyTM 119 (1027)
...+..+++|.|..+.| +||||||.+.
T Consensus 42 ~~ai~~il~G~nvvv~a--pTGSGKTla~ 68 (742)
T TIGR03817 42 ARAAELAHAGRHVVVAT--GTASGKSLAY 68 (742)
T ss_pred HHHHHHHHCCCCEEEEC--CCCCcHHHHH
Confidence 34455678999966654 8999999875
No 356
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=21.56 E-value=32 Score=41.39 Aligned_cols=36 Identities=19% Similarity=0.457 Sum_probs=24.9
Q ss_pred cCCCeeEEEecccCCCCcccccCChhh-H--------HHHHHHHHHh
Q 001693 99 SGINSSVFAYGQTSSGKTYTMIGITEY-T--------MSDIYDYIEK 136 (1027)
Q Consensus 99 ~G~NatIfAYGQTGSGKTyTM~GIi~r-a--------v~dLF~~Ie~ 136 (1027)
.++|. +-.|++|+||||...++-+. + +..||..+..
T Consensus 208 ~~~Nl--i~lGp~GTGKThla~~l~~~~a~~sG~f~T~a~Lf~~L~~ 252 (449)
T TIGR02688 208 PNYNL--IELGPKGTGKSYIYNNLSPYVILISGGTITVAKLFYNIST 252 (449)
T ss_pred cCCcE--EEECCCCCCHHHHHHHHhHHHHHHcCCcCcHHHHHHHHHH
Confidence 56775 55799999999988765555 2 4456665544
No 357
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.55 E-value=5.5e+02 Score=29.02 Aligned_cols=81 Identities=22% Similarity=0.254 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHhhcccccceeccccCHHHHHHHHHHHHHHHHHHHhcCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHH
Q 001693 329 EQSRNTLLFASCAKEVTTNAQVNIVMSDKALVKHLQRELSRLENELRGSGPVFITPDSVSVLREKDLRIEKLEKEVDELT 408 (1027)
Q Consensus 329 eETlsTLrFAsRAK~Ikn~~~vN~~~s~kalik~Lq~Ei~~Le~eL~~~~~~~~~~~~~~~l~ek~~~i~kle~ei~eL~ 408 (1027)
.-++.++.++.....+...-+.-.+...+.+ .|.+++..+++++ .....+++.+++.++..+
T Consensus 23 s~~~~~~l~~~~~a~~~q~~k~~~~~~~r~~--~L~~e~~s~Q~~~----------------~~L~~ev~~~~~~~~s~~ 84 (247)
T COG3879 23 SISLAMLLAGVMLAAVFQTSKGESVRRARDL--DLVKELRSLQKKV----------------NTLAAEVEDLENKLDSVR 84 (247)
T ss_pred HHHHHHHHHHHHHHHHHhhccCcchhhhhhh--HHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHH
Confidence 3466777777666666655554444333322 4555555554432 233445666666666666
Q ss_pred ----HHHHHHHHHHHHHHHHhcC
Q 001693 409 ----MQRDLARTEVENLLRGAGK 427 (1027)
Q Consensus 409 ----~q~d~a~~~~~~l~~~~~~ 427 (1027)
.....++.+++.|...+|-
T Consensus 85 ~~~~t~~~~ie~~l~~l~~~aG~ 107 (247)
T COG3879 85 RSVLTDDAALEDRLEKLRMLAGS 107 (247)
T ss_pred HhHHhHHHHHHHHHHHHHHHhcc
Confidence 2222333345555555443
No 358
>PRK06217 hypothetical protein; Validated
Probab=21.51 E-value=37 Score=35.22 Aligned_cols=14 Identities=29% Similarity=0.401 Sum_probs=12.4
Q ss_pred EEEecccCCCCccc
Q 001693 105 VFAYGQTSSGKTYT 118 (1027)
Q Consensus 105 IfAYGQTGSGKTyT 118 (1027)
|+-.|.+|||||+.
T Consensus 4 I~i~G~~GsGKSTl 17 (183)
T PRK06217 4 IHITGASGSGTTTL 17 (183)
T ss_pred EEEECCCCCCHHHH
Confidence 78889999999875
No 359
>PTZ00110 helicase; Provisional
Probab=21.38 E-value=53 Score=40.43 Aligned_cols=25 Identities=28% Similarity=0.291 Sum_probs=19.1
Q ss_pred HHHHHhcCCCeeEEEecccCCCCcccc
Q 001693 93 VALAVVSGINSSVFAYGQTSSGKTYTM 119 (1027)
Q Consensus 93 lV~svL~G~NatIfAYGQTGSGKTyTM 119 (1027)
.+..++.|.|. ++.++||||||.+.
T Consensus 160 aip~~l~G~dv--I~~ApTGSGKTlay 184 (545)
T PTZ00110 160 GWPIALSGRDM--IGIAETGSGKTLAF 184 (545)
T ss_pred HHHHHhcCCCE--EEEeCCCChHHHHH
Confidence 35567889876 45679999999874
No 360
>PF10923 DUF2791: P-loop Domain of unknown function (DUF2791); InterPro: IPR021228 This is a family of proteins found in archaea and bacteria. Some of the proteins in this family are annotated as being methyl-accepting chemotaxis proteins and ATP/GTP binding proteins.
Probab=21.38 E-value=73 Score=38.25 Aligned_cols=28 Identities=32% Similarity=0.332 Sum_probs=24.5
Q ss_pred HHHHHHhcCCCeeEEEecccCCCCcccc
Q 001693 92 EVALAVVSGINSSVFAYGQTSSGKTYTM 119 (1027)
Q Consensus 92 plV~svL~G~NatIfAYGQTGSGKTyTM 119 (1027)
.-++.+-+|....-|..|.-||||||.+
T Consensus 39 ~~l~~v~~G~s~~kfi~G~YGsGKTf~l 66 (416)
T PF10923_consen 39 RDLDRVADGGSSFKFIRGEYGSGKTFFL 66 (416)
T ss_pred HHHHHHhCCCCeEEEEEeCCCCcHHHHH
Confidence 3457788999999999999999999976
No 361
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=21.36 E-value=1.8e+02 Score=35.46 Aligned_cols=15 Identities=20% Similarity=0.501 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHH
Q 001693 360 VKHLQRELSRLENEL 374 (1027)
Q Consensus 360 ik~Lq~Ei~~Le~eL 374 (1027)
..+|+++++.|+.|+
T Consensus 78 asELEKqLaaLrqEl 92 (475)
T PRK13729 78 AAQMQKQYEEIRREL 92 (475)
T ss_pred HHHHHHHHHHHHHHH
Confidence 445555555555444
No 362
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=21.31 E-value=63 Score=35.14 Aligned_cols=26 Identities=23% Similarity=0.332 Sum_probs=19.3
Q ss_pred HHHHHhc-CC--CeeEEEecccCCCCccc
Q 001693 93 VALAVVS-GI--NSSVFAYGQTSSGKTYT 118 (1027)
Q Consensus 93 lV~svL~-G~--NatIfAYGQTGSGKTyT 118 (1027)
-++.++. |+ ..+++.+|.+|||||.-
T Consensus 9 ~LD~~l~GG~~~gs~~lI~G~pGsGKT~l 37 (237)
T TIGR03877 9 GMDEILHGGIPERNVVLLSGGPGTGKSIF 37 (237)
T ss_pred hHHHHhcCCCcCCeEEEEEcCCCCCHHHH
Confidence 4566665 43 56788999999999863
No 363
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=21.28 E-value=66 Score=36.50 Aligned_cols=26 Identities=23% Similarity=0.258 Sum_probs=18.6
Q ss_pred HHHHhcCC-CeeEEEecccCCCCcccc
Q 001693 94 ALAVVSGI-NSSVFAYGQTSSGKTYTM 119 (1027)
Q Consensus 94 V~svL~G~-NatIfAYGQTGSGKTyTM 119 (1027)
...+-.|. ...++-||+.|+|||.+.
T Consensus 27 ~~~~~~~~~~~~~Ll~G~~G~GKt~~a 53 (355)
T TIGR02397 27 KNAIKNGRIAHAYLFSGPRGTGKTSIA 53 (355)
T ss_pred HHHHHcCCCCeEEEEECCCCCCHHHHH
Confidence 33334453 456889999999999876
No 364
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=21.25 E-value=33 Score=35.96 Aligned_cols=15 Identities=33% Similarity=0.308 Sum_probs=12.5
Q ss_pred EEEecccCCCCcccc
Q 001693 105 VFAYGQTSSGKTYTM 119 (1027)
Q Consensus 105 IfAYGQTGSGKTyTM 119 (1027)
|.-.|.+|||||++-
T Consensus 2 IgI~G~sgSGKTTla 16 (194)
T PF00485_consen 2 IGIAGPSGSGKTTLA 16 (194)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 566899999999864
No 365
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=21.24 E-value=29 Score=36.30 Aligned_cols=31 Identities=16% Similarity=0.232 Sum_probs=21.7
Q ss_pred HHHHHhcCCCeeEEEecccCCCCcccccCChhh
Q 001693 93 VALAVVSGINSSVFAYGQTSSGKTYTMIGITEY 125 (1027)
Q Consensus 93 lV~svL~G~NatIfAYGQTGSGKTyTM~GIi~r 125 (1027)
-+...+.| -+++-.||+|.|||..+-.+.+.
T Consensus 28 ~l~~~l~~--k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 28 ELKELLKG--KTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp HHHHHHTT--SEEEEECSTTSSHHHHHHHHHTS
T ss_pred HHHHHhcC--CEEEEECCCCCCHHHHHHHHHhh
Confidence 34466677 45666799999999887544443
No 366
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=21.20 E-value=51 Score=40.31 Aligned_cols=26 Identities=19% Similarity=0.367 Sum_probs=19.5
Q ss_pred HHHhcCCCe------eEEEecccCCCCccccc
Q 001693 95 LAVVSGINS------SVFAYGQTSSGKTYTMI 120 (1027)
Q Consensus 95 ~svL~G~Na------tIfAYGQTGSGKTyTM~ 120 (1027)
..+++|++. .|+-.|++|||||+.|.
T Consensus 19 ~~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr 50 (504)
T TIGR03238 19 ERILVKFNKELPSSSLLFLCGSSGDGKSEILA 50 (504)
T ss_pred HHHHhCCceeecCCCEEEEECCCCCCHHHHHh
Confidence 455677544 46789999999999874
No 367
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=21.14 E-value=58 Score=39.86 Aligned_cols=41 Identities=17% Similarity=0.201 Sum_probs=26.1
Q ss_pred ecceeeCCCCChhhHHHhhHHHHHHHHhcCCCe-eEEEecccCCCCcccc
Q 001693 71 TFDRVFSCDCTTRKVYEEGAKEVALAVVSGINS-SVFAYGQTSSGKTYTM 119 (1027)
Q Consensus 71 ~FD~VF~~~asQeeVYe~~v~plV~svL~G~Na-tIfAYGQTGSGKTyTM 119 (1027)
+||.|.+. +.+ ++.+-..+-.|.-. .++-||+.|+|||.+.
T Consensus 11 ~f~dliGQ----e~v----v~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~A 52 (491)
T PRK14964 11 SFKDLVGQ----DVL----VRILRNAFTLNKIPQSILLVGASGVGKTTCA 52 (491)
T ss_pred CHHHhcCc----HHH----HHHHHHHHHcCCCCceEEEECCCCccHHHHH
Confidence 56777663 322 23333333445544 7899999999999865
No 368
>PRK01172 ski2-like helicase; Provisional
Probab=21.13 E-value=59 Score=40.92 Aligned_cols=24 Identities=29% Similarity=0.260 Sum_probs=17.6
Q ss_pred HHHHhcCCCeeEEEecccCCCCcccc
Q 001693 94 ALAVVSGINSSVFAYGQTSSGKTYTM 119 (1027)
Q Consensus 94 V~svL~G~NatIfAYGQTGSGKTyTM 119 (1027)
+..+.+|.| ++..++||||||...
T Consensus 31 i~~l~~~~n--vlv~apTGSGKTl~a 54 (674)
T PRK01172 31 IEQLRKGEN--VIVSVPTAAGKTLIA 54 (674)
T ss_pred HHHHhcCCc--EEEECCCCchHHHHH
Confidence 334567877 566789999999763
No 369
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=21.12 E-value=40 Score=33.77 Aligned_cols=33 Identities=27% Similarity=0.384 Sum_probs=22.2
Q ss_pred hHHHHHHHHhcCCCeeEEEecccCCCCcccccCCh
Q 001693 89 GAKEVALAVVSGINSSVFAYGQTSSGKTYTMIGIT 123 (1027)
Q Consensus 89 ~v~plV~svL~G~NatIfAYGQTGSGKTyTM~GIi 123 (1027)
.++.+...+-.| ..|+-+|.-|||||+-..|+.
T Consensus 4 la~~l~~~l~~g--~vi~L~GdLGaGKTtf~r~l~ 36 (123)
T PF02367_consen 4 LAKKLAQILKPG--DVILLSGDLGAGKTTFVRGLA 36 (123)
T ss_dssp HHHHHHHHHSS---EEEEEEESTTSSHHHHHHHHH
T ss_pred HHHHHHHhCCCC--CEEEEECCCCCCHHHHHHHHH
Confidence 344455444333 568999999999999876543
No 370
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=21.02 E-value=66 Score=38.79 Aligned_cols=42 Identities=21% Similarity=0.196 Sum_probs=27.0
Q ss_pred ecceeeCCCCChhhHHHhhHHHHHHHHhcCCC-eeEEEecccCCCCccccc
Q 001693 71 TFDRVFSCDCTTRKVYEEGAKEVALAVVSGIN-SSVFAYGQTSSGKTYTMI 120 (1027)
Q Consensus 71 ~FD~VF~~~asQeeVYe~~v~plV~svL~G~N-atIfAYGQTGSGKTyTM~ 120 (1027)
+||.|++.+ .+ +..+...+-.|.- .+++-||+.|+|||.+..
T Consensus 15 ~~~diiGq~----~~----v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~ 57 (451)
T PRK06305 15 TFSEILGQD----AV----VAVLKNALRFNRAAHAYLFSGIRGTGKTTLAR 57 (451)
T ss_pred CHHHhcCcH----HH----HHHHHHHHHcCCCceEEEEEcCCCCCHHHHHH
Confidence 677887733 22 3334444445543 456779999999998874
No 371
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=20.94 E-value=36 Score=32.20 Aligned_cols=16 Identities=19% Similarity=0.414 Sum_probs=13.4
Q ss_pred eEEEecccCCCCcccc
Q 001693 104 SVFAYGQTSSGKTYTM 119 (1027)
Q Consensus 104 tIfAYGQTGSGKTyTM 119 (1027)
-|..+|.+|||||..+
T Consensus 3 ki~~~G~~~~GKstl~ 18 (161)
T TIGR00231 3 KIVIVGDPNVGKSTLL 18 (161)
T ss_pred EEEEECCCCCCHHHHH
Confidence 3678899999999865
No 372
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=20.89 E-value=36 Score=35.59 Aligned_cols=15 Identities=33% Similarity=0.319 Sum_probs=12.6
Q ss_pred EEEecccCCCCcccc
Q 001693 105 VFAYGQTSSGKTYTM 119 (1027)
Q Consensus 105 IfAYGQTGSGKTyTM 119 (1027)
|.--|.+|||||+++
T Consensus 2 igi~G~~GsGKSTl~ 16 (198)
T cd02023 2 IGIAGGSGSGKTTVA 16 (198)
T ss_pred EEEECCCCCCHHHHH
Confidence 456799999999987
No 373
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=20.85 E-value=78 Score=38.18 Aligned_cols=36 Identities=22% Similarity=0.419 Sum_probs=26.9
Q ss_pred CCCeeEEEecccCCCCccccc-----------------------CChhhHHHHHHHHHH
Q 001693 100 GINSSVFAYGQTSSGKTYTMI-----------------------GITEYTMSDIYDYIE 135 (1027)
Q Consensus 100 G~NatIfAYGQTGSGKTyTM~-----------------------GIi~rav~dLF~~Ie 135 (1027)
+....|+-||+.|+|||+.-- |-....+..+|....
T Consensus 274 ~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~sk~vGesek~ir~~F~~A~ 332 (494)
T COG0464 274 RPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLSKWVGESEKNIRELFEKAR 332 (494)
T ss_pred CCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhccccchHHHHHHHHHHHHH
Confidence 455579999999999998762 445566777777665
No 374
>smart00338 BRLZ basic region leucin zipper.
Probab=20.84 E-value=3.3e+02 Score=23.81 Aligned_cols=28 Identities=32% Similarity=0.452 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001693 395 LRIEKLEKEVDELTMQRDLARTEVENLL 422 (1027)
Q Consensus 395 ~~i~kle~ei~eL~~q~d~a~~~~~~l~ 422 (1027)
.++..|+.++.+|..+++.++.++..|.
T Consensus 33 ~~~~~L~~en~~L~~~~~~l~~e~~~lk 60 (65)
T smart00338 33 RKVEQLEAENERLKKEIERLRRELEKLK 60 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444445444444444444443
No 375
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=20.83 E-value=4.9e+02 Score=26.09 Aligned_cols=46 Identities=17% Similarity=0.246 Sum_probs=28.1
Q ss_pred HHHHHHHHHHhhcccccceeccccCHHHHHHHHHHHHHHHHHHHhcC
Q 001693 331 SRNTLLFASCAKEVTTNAQVNIVMSDKALVKHLQRELSRLENELRGS 377 (1027)
Q Consensus 331 TlsTLrFAsRAK~Ikn~~~vN~~~s~kalik~Lq~Ei~~Le~eL~~~ 377 (1027)
..+.-.||+.+=...|++.-. ..+..+-+++|..-++.+..+|+..
T Consensus 7 dFd~~~fan~ll~~~~~~~~~-~ld~~~~l~kL~~~i~eld~~i~~~ 52 (132)
T PF10392_consen 7 DFDPVQFANDLLKSTNNNSDS-ELDISTPLKKLNFDIQELDKRIRSQ 52 (132)
T ss_pred CCCHHHHHHHHHHhhcCCCCC-cccHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556777666655544322 3444556777777777777777653
No 376
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=20.81 E-value=2.1e+02 Score=31.05 Aligned_cols=18 Identities=22% Similarity=0.414 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHhcC
Q 001693 360 VKHLQRELSRLENELRGS 377 (1027)
Q Consensus 360 ik~Lq~Ei~~Le~eL~~~ 377 (1027)
-.+|..++..|+..+++.
T Consensus 38 na~L~~e~~~L~~q~~s~ 55 (193)
T PF14662_consen 38 NAQLAEEITDLRKQLKSL 55 (193)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345666666666665543
No 377
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=20.66 E-value=85 Score=35.75 Aligned_cols=17 Identities=24% Similarity=0.388 Sum_probs=14.9
Q ss_pred eEEEecccCCCCccccc
Q 001693 104 SVFAYGQTSSGKTYTMI 120 (1027)
Q Consensus 104 tIfAYGQTGSGKTyTM~ 120 (1027)
.|+..|.+|||||.++.
T Consensus 8 ~i~i~G~~GsGKtt~~~ 24 (288)
T PRK05416 8 LVIVTGLSGAGKSVALR 24 (288)
T ss_pred EEEEECCCCCcHHHHHH
Confidence 57889999999999874
No 378
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=20.65 E-value=58 Score=41.08 Aligned_cols=17 Identities=24% Similarity=0.393 Sum_probs=15.0
Q ss_pred eEEEecccCCCCccccc
Q 001693 104 SVFAYGQTSSGKTYTMI 120 (1027)
Q Consensus 104 tIfAYGQTGSGKTyTM~ 120 (1027)
.++-||++|+|||.++.
T Consensus 112 illL~GP~GsGKTTl~~ 128 (637)
T TIGR00602 112 ILLITGPSGCGKSTTIK 128 (637)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47889999999999985
No 379
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=20.60 E-value=43 Score=32.79 Aligned_cols=17 Identities=29% Similarity=0.341 Sum_probs=13.9
Q ss_pred eeEEEecccCCCCcccc
Q 001693 103 SSVFAYGQTSSGKTYTM 119 (1027)
Q Consensus 103 atIfAYGQTGSGKTyTM 119 (1027)
-.+.-.|++|||||.++
T Consensus 16 e~v~I~GpSGsGKSTLl 32 (107)
T cd00820 16 VGVLITGDSGIGKTELA 32 (107)
T ss_pred EEEEEEcCCCCCHHHHH
Confidence 34567899999999876
No 380
>PRK14531 adenylate kinase; Provisional
Probab=20.45 E-value=43 Score=34.83 Aligned_cols=16 Identities=19% Similarity=0.322 Sum_probs=13.6
Q ss_pred eEEEecccCCCCcccc
Q 001693 104 SVFAYGQTSSGKTYTM 119 (1027)
Q Consensus 104 tIfAYGQTGSGKTyTM 119 (1027)
-|+.+|..|||||+.-
T Consensus 4 ~i~i~G~pGsGKsT~~ 19 (183)
T PRK14531 4 RLLFLGPPGAGKGTQA 19 (183)
T ss_pred EEEEECCCCCCHHHHH
Confidence 3788999999998764
No 381
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=20.44 E-value=2.8e+02 Score=35.06 Aligned_cols=16 Identities=25% Similarity=0.364 Sum_probs=13.6
Q ss_pred eEEEecccCCCCcccc
Q 001693 104 SVFAYGQTSSGKTYTM 119 (1027)
Q Consensus 104 tIfAYGQTGSGKTyTM 119 (1027)
+++-+|+.|+|||..|
T Consensus 30 ~~~i~G~Ng~GKttll 45 (650)
T TIGR03185 30 IILIGGLNGAGKTTLL 45 (650)
T ss_pred EEEEECCCCCCHHHHH
Confidence 5567899999999888
No 382
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=20.42 E-value=67 Score=37.87 Aligned_cols=40 Identities=15% Similarity=0.210 Sum_probs=24.5
Q ss_pred ecceeeCCCCChhhHHHhhHHHHHHHHh-cCCC-eeEEEecccCCCCcccc
Q 001693 71 TFDRVFSCDCTTRKVYEEGAKEVALAVV-SGIN-SSVFAYGQTSSGKTYTM 119 (1027)
Q Consensus 71 ~FD~VF~~~asQeeVYe~~v~plV~svL-~G~N-atIfAYGQTGSGKTyTM 119 (1027)
+||.|++ |+.+ .+ .+.+++ .|.- ..++-||+.|+|||.+.
T Consensus 14 ~~~eiiG----q~~~----~~-~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A 55 (397)
T PRK14955 14 KFADITA----QEHI----TR-TIQNSLRMGRVGHGYIFSGLRGVGKTTAA 55 (397)
T ss_pred cHhhccC----hHHH----HH-HHHHHHHhCCcceeEEEECCCCCCHHHHH
Confidence 5777776 3333 22 333333 4533 34777999999999765
No 383
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=20.39 E-value=5.4e+02 Score=24.66 Aligned_cols=39 Identities=18% Similarity=0.226 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 001693 388 SVLREKDLRIEKLEKEVDELTMQRDLARTEVENLLRGAG 426 (1027)
Q Consensus 388 ~~l~ek~~~i~kle~ei~eL~~q~d~a~~~~~~l~~~~~ 426 (1027)
.+....+.+++.++.+++.+..+.+.+..++.++...+.
T Consensus 63 ea~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~ 101 (105)
T cd00632 63 EARTELKERLETIELRIKRLERQEEDLQEKLKELQEKIQ 101 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555666666666666666666666666665543
No 384
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=20.35 E-value=74 Score=36.75 Aligned_cols=30 Identities=17% Similarity=0.173 Sum_probs=20.6
Q ss_pred HHHHHHHhcCC-CeeEEEecccCCCCccccc
Q 001693 91 KEVALAVVSGI-NSSVFAYGQTSSGKTYTMI 120 (1027)
Q Consensus 91 ~plV~svL~G~-NatIfAYGQTGSGKTyTM~ 120 (1027)
..+...+-.|. ...++-||+.|+|||++..
T Consensus 27 ~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~ 57 (367)
T PRK14970 27 NTLLNAIENNHLAQALLFCGPRGVGKTTCAR 57 (367)
T ss_pred HHHHHHHHcCCCCeEEEEECCCCCCHHHHHH
Confidence 33444444564 4478889999999998763
No 385
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=20.32 E-value=41 Score=34.33 Aligned_cols=17 Identities=18% Similarity=0.262 Sum_probs=13.7
Q ss_pred eeEEEecccCCCCcccc
Q 001693 103 SSVFAYGQTSSGKTYTM 119 (1027)
Q Consensus 103 atIfAYGQTGSGKTyTM 119 (1027)
..|+..|++|||||..+
T Consensus 2 ~ii~l~G~~GsGKsTl~ 18 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLV 18 (180)
T ss_pred cEEEEECCCCCCHHHHH
Confidence 35778999999999853
No 386
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=20.28 E-value=68 Score=40.23 Aligned_cols=19 Identities=26% Similarity=0.361 Sum_probs=15.2
Q ss_pred CCeeEEEecccCCCCcccc
Q 001693 101 INSSVFAYGQTSSGKTYTM 119 (1027)
Q Consensus 101 ~NatIfAYGQTGSGKTyTM 119 (1027)
....++..|+||||||...
T Consensus 255 ~~~~~Ll~g~TGSGKT~va 273 (630)
T TIGR00643 255 VPMNRLLQGDVGSGKTLVA 273 (630)
T ss_pred CCccEEEECCCCCcHHHHH
Confidence 3345789999999999865
No 387
>PRK00300 gmk guanylate kinase; Provisional
Probab=20.28 E-value=43 Score=35.00 Aligned_cols=18 Identities=17% Similarity=0.287 Sum_probs=14.2
Q ss_pred CeeEEEecccCCCCcccc
Q 001693 102 NSSVFAYGQTSSGKTYTM 119 (1027)
Q Consensus 102 NatIfAYGQTGSGKTyTM 119 (1027)
+..|.-.|++|||||..+
T Consensus 5 g~~i~i~G~sGsGKstl~ 22 (205)
T PRK00300 5 GLLIVLSGPSGAGKSTLV 22 (205)
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 346778899999999654
No 388
>PRK10867 signal recognition particle protein; Provisional
Probab=20.17 E-value=94 Score=37.50 Aligned_cols=19 Identities=26% Similarity=0.295 Sum_probs=15.8
Q ss_pred CeeEEEecccCCCCccccc
Q 001693 102 NSSVFAYGQTSSGKTYTMI 120 (1027)
Q Consensus 102 NatIfAYGQTGSGKTyTM~ 120 (1027)
-..|+..|.+|+|||+|..
T Consensus 100 p~vI~~vG~~GsGKTTtaa 118 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAG 118 (433)
T ss_pred CEEEEEECCCCCcHHHHHH
Confidence 3567888999999999963
No 389
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=20.15 E-value=41 Score=41.35 Aligned_cols=14 Identities=43% Similarity=0.731 Sum_probs=0.0
Q ss_pred EEEecccCCCCccc
Q 001693 105 VFAYGQTSSGKTYT 118 (1027)
Q Consensus 105 IfAYGQTGSGKTyT 118 (1027)
|+-||++|+|||+.
T Consensus 219 ILLyGPPGTGKT~L 232 (512)
T TIGR03689 219 VLLYGPPGCGKTLI 232 (512)
T ss_pred eEEECCCCCcHHHH
No 390
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=20.12 E-value=39 Score=40.49 Aligned_cols=18 Identities=33% Similarity=0.442 Sum_probs=15.7
Q ss_pred eeEEEecccCCCCccccc
Q 001693 103 SSVFAYGQTSSGKTYTMI 120 (1027)
Q Consensus 103 atIfAYGQTGSGKTyTM~ 120 (1027)
..|+-.|++|+|||+|+.
T Consensus 242 ~vI~LVGptGvGKTTTia 259 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLA 259 (436)
T ss_pred cEEEEECCCCCcHHHHHH
Confidence 467889999999999984
No 391
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=20.04 E-value=58 Score=37.84 Aligned_cols=28 Identities=18% Similarity=0.338 Sum_probs=19.2
Q ss_pred HHHHHHHHhcCCCeeEEEecccCCCCcccc
Q 001693 90 AKEVALAVVSGINSSVFAYGQTSSGKTYTM 119 (1027)
Q Consensus 90 v~plV~svL~G~NatIfAYGQTGSGKTyTM 119 (1027)
...++..+.. +.-|+-.|.+|+|||...
T Consensus 54 ~~~vl~~l~~--~~~ilL~G~pGtGKTtla 81 (327)
T TIGR01650 54 TKAICAGFAY--DRRVMVQGYHGTGKSTHI 81 (327)
T ss_pred HHHHHHHHhc--CCcEEEEeCCCChHHHHH
Confidence 3344444443 445888999999999764
No 392
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=20.04 E-value=43 Score=40.15 Aligned_cols=19 Identities=32% Similarity=0.253 Sum_probs=16.1
Q ss_pred CeeEEEecccCCCCccccc
Q 001693 102 NSSVFAYGQTSSGKTYTMI 120 (1027)
Q Consensus 102 NatIfAYGQTGSGKTyTM~ 120 (1027)
+..|...|++|+|||+|+.
T Consensus 191 g~vi~lvGpnG~GKTTtla 209 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTA 209 (420)
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 3567889999999999984
Done!