BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001696
(1026 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2EP6|A Chain A, Solution Structure Of The Second C2 Domain From Human
Mctp2 Protein
Length = 133
Score = 63.5 bits (153), Expect = 5e-10, Method: Composition-based stats.
Identities = 34/91 (37%), Positives = 55/91 (60%), Gaps = 1/91 (1%)
Query: 281 VEQMSYLYVRVVKAKDLPPSSITGSCDPYVEVKMGNYKGRTKHFEKRMNPEWNQVFAFSK 340
V+ + L V+V+KA DL + +G DP+ +++GN + +T K +NPEWN+VF F
Sbjct: 9 VKDVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPI 68
Query: 341 ERIQSSMLEVFLKDKEMVGRDDYLGRVAFDL 371
+ I +LEV + D++ D+LG+VA L
Sbjct: 69 KDIH-DVLEVTVFDEDGDKPPDFLGKVAIPL 98
Score = 53.1 bits (126), Expect = 8e-07, Method: Composition-based stats.
Identities = 35/98 (35%), Positives = 54/98 (55%), Gaps = 7/98 (7%)
Query: 3 LVVEVVDAYDLMPKDGEGSASPFAEVDFLNQLSKTKTIPKNLNPVWNQKLLFDFDQTKSH 62
L V+V+ A DL+ D G + PF ++ N +T T+ KNLNP WN+ +F F H
Sbjct: 15 LQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNK--VFTFPIKDIH 72
Query: 63 NHLRIEVSIYHHERRPIPGRHFLGRVRIPCSNLVRKGE 100
+ L EV+++ + P FLG+V IP + +R G+
Sbjct: 73 DVL--EVTVFDEDGDKPP--DFLGKVAIPLLS-IRDGQ 105
Score = 52.8 bits (125), Expect = 1e-06, Method: Composition-based stats.
Identities = 26/73 (35%), Positives = 42/73 (57%), Gaps = 3/73 (4%)
Query: 611 VGILEVGILGAQGLLPMKMKDGRGSTDAYCIAKYGQKWVRTRTILDTFNPKWNEQYTWEV 670
VGIL+V +L A LL D G +D +C+ + G ++T T+ NP+WN+ +T+ +
Sbjct: 12 VGILQVKVLKAADLLA---ADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPI 68
Query: 671 YDPCTVITLGVFD 683
D V+ + VFD
Sbjct: 69 KDIHDVLEVTVFD 81
>pdb|1RH8|A Chain A, Three-Dimensional Structure Of The Calcium-Free Piccolo
C2a- Domain
Length = 142
Score = 60.8 bits (146), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 63/125 (50%), Gaps = 22/125 (17%)
Query: 287 LYVRVVKAKDLPPSSITGSCDPYVEVKM--------------GNYKGRTKHFEKRMNPEW 332
L + +++A++L P G DP+V+V + YK RTK+ +K +NPEW
Sbjct: 20 LIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEW 79
Query: 333 NQVFAF---SKERIQSSMLEVFLKDKEMVGRDDYLGRVAFDLNEVPTRVPPDSPLAPQWY 389
NQ + S E++ LEV + D + +D+LG V DL+ D+ P+WY
Sbjct: 80 NQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHL---DN--TPRWY 134
Query: 390 RLEDR 394
L+++
Sbjct: 135 PLKEQ 139
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 51/107 (47%), Gaps = 16/107 (14%)
Query: 2 KLVVEVVDAYDLMPKDGEGSASPFAEVDFL--------------NQLSKTKTIPKNLNPV 47
L++ ++ A +L+P+D G + PF +V L +TK + K+LNP
Sbjct: 19 NLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPE 78
Query: 48 WNQKLLFDFDQTKSHNHLRIEVSIYHHERRPIPGRHFLGRVRIPCSN 94
WNQ +++ + +EV+++ ++R FLG V I S+
Sbjct: 79 WNQTVIYKSISMEQLMKKTLEVTVWDYDR--FSSNDFLGEVLIDLSS 123
Score = 34.3 bits (77), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 63/124 (50%), Gaps = 22/124 (17%)
Query: 450 LRVNVIEAQDIVPNDRNRLPEGFVKVQV---GNQVL-----------KTKICPTPTTNPL 495
L +++++A+++VP D N + FVKV + QV+ +TK + NP
Sbjct: 20 LIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYV-QKSLNPE 78
Query: 496 WNEDLVFVA---AEPFEEQLFLTVEDRVHASKDEVLGKISLPLHIFEKRLDHRPVHSRWF 552
WN+ +++ + + ++ L +TV D S ++ LG++ + L LD+ P RW+
Sbjct: 79 WNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLS-STSHLDNTP---RWY 134
Query: 553 NLEK 556
L++
Sbjct: 135 PLKE 138
>pdb|2D8K|A Chain A, Solution Structure Of The First C2 Domain Of Synaptotagmin
Vii
Length = 141
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 61/108 (56%), Gaps = 8/108 (7%)
Query: 273 RFTSTYDLVEQMSYLYVRVVKAKDLPPSSITGSCDPYVEVKM---GNYKGRTKHFEKRMN 329
+F+ Y+ Q S L V+++KA++LP +G+ DP+V++ + +K TK K +N
Sbjct: 16 QFSVGYNF--QESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLN 73
Query: 330 PEWNQVF---AFSKERIQSSMLEVFLKDKEMVGRDDYLGRVAFDLNEV 374
P WN+ F F E++ +L + + D + R+D +G V+ LN+V
Sbjct: 74 PHWNETFLFEGFPYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKV 121
Score = 38.9 bits (89), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 3/56 (5%)
Query: 3 LVVEVVDAYDLMPKDGEGSASPFAEVDFL---NQLSKTKTIPKNLNPVWNQKLLFD 55
L V+++ A +L KD G++ PF ++ L +TK KNLNP WN+ LF+
Sbjct: 28 LTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFE 83
Score = 38.5 bits (88), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 61/116 (52%), Gaps = 13/116 (11%)
Query: 450 LRVNVIEAQDIVPNDRNRLPEGFVKVQV---GNQVLKTKICPTPTTNPLWNEDLVFVAAE 506
L V +++AQ++ D + + FVK+ + L+TK+ NP WNE +F
Sbjct: 28 LTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVK-RKNLNPHWNETFLF-EGF 85
Query: 507 PFEEQ----LFLTVEDRVHASKDEVLGKISLPLHIFEKRLDHRPVHSRWFNLEKFG 558
P+E+ L+L V D S+++ +G++S+PL+ ++D + + W +L+ G
Sbjct: 86 PYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPLN----KVDLTQMQTFWKDLKPSG 137
>pdb|1A25|A Chain A, C2 Domain From Protein Kinase C (Beta)
pdb|1A25|B Chain B, C2 Domain From Protein Kinase C (Beta)
Length = 149
Score = 57.0 bits (136), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 53/94 (56%), Gaps = 6/94 (6%)
Query: 287 LYVRVVKAKDLPPSSITGSCDPYVEVKM-----GNYKGRTKHFEKRMNPEWNQVFAFS-K 340
L V V AK+L P G DPYV++K+ K +TK + +NPEWN+ F F K
Sbjct: 33 LIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLK 92
Query: 341 ERIQSSMLEVFLKDKEMVGRDDYLGRVAFDLNEV 374
E + L V + D ++ R+D++G ++F ++E+
Sbjct: 93 ESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISEL 126
Score = 46.2 bits (108), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 47/102 (46%), Gaps = 9/102 (8%)
Query: 3 LVVEVVDAYDLMPKDGEGSASPFAEVDFL-----NQLSKTKTIPKNLNPVWNQKLLFDFD 57
L+V V DA +L+P D G + P+ ++ + KTKTI +LNP WN+ F
Sbjct: 33 LIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLK 92
Query: 58 QTKSHNHLRIEVSIYHHERRPIPGRHFLGRVRIPCSNLVRKG 99
++ L +E+ + R F+G + S L + G
Sbjct: 93 ESDKDRRLSVEIWDWDLTSR----NDFMGSLSFGISELQKAG 130
Score = 34.7 bits (78), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 56/113 (49%), Gaps = 13/113 (11%)
Query: 438 RSKVYVSPKL--WYLRVNVIEAQDIVPNDRNRLPEGFVKVQV-------GNQVLKTKICP 488
R ++Y+ + L V V +A+++VP D N L + +VK+++ Q KT C
Sbjct: 19 RGRIYIQAHIDREVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKC- 77
Query: 489 TPTTNPLWNEDLVFVAAEPFEE-QLFLTVEDRVHASKDEVLGKISLPLHIFEK 540
+ NP WNE F E ++ +L + + D S+++ +G +S + +K
Sbjct: 78 --SLNPEWNETFRFQLKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQK 128
Score = 30.0 bits (66), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 8/63 (12%)
Query: 613 ILEVGILGAQGLLPMKMKDGRGSTDAYCIAKY-----GQKWVRTRTILDTFNPKWNEQYT 667
+L V + A+ L+PM D G +D Y K + +T+TI + NP+WNE +
Sbjct: 32 VLIVVVRDAKNLVPM---DPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFR 88
Query: 668 WEV 670
+++
Sbjct: 89 FQL 91
>pdb|3PFQ|A Chain A, Crystal Structure And Allosteric Activation Of Protein
Kinase C Beta Ii
Length = 674
Score = 56.6 bits (135), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 53/94 (56%), Gaps = 6/94 (6%)
Query: 287 LYVRVVKAKDLPPSSITGSCDPYVEVKM-----GNYKGRTKHFEKRMNPEWNQVFAFS-K 340
L V V AK+L P G DPYV++K+ K +TK + +NPEWN+ F F K
Sbjct: 174 LIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQLK 233
Query: 341 ERIQSSMLEVFLKDKEMVGRDDYLGRVAFDLNEV 374
E + L V + D ++ R+D++G ++F ++E+
Sbjct: 234 ESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISEL 267
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 47/102 (46%), Gaps = 9/102 (8%)
Query: 3 LVVEVVDAYDLMPKDGEGSASPFAEVDFL-----NQLSKTKTIPKNLNPVWNQKLLFDFD 57
L+V V DA +L+P D G + P+ ++ + KTKTI +LNP WN+ F
Sbjct: 174 LIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQLK 233
Query: 58 QTKSHNHLRIEVSIYHHERRPIPGRHFLGRVRIPCSNLVRKG 99
++ L +E+ + R F+G + S L + G
Sbjct: 234 ESDKDRRLSVEIWDWDLTSR----NDFMGSLSFGISELQKAG 271
Score = 33.1 bits (74), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 56/111 (50%), Gaps = 9/111 (8%)
Query: 438 RSKVYVSPKL--WYLRVNVIEAQDIVPNDRNRLPEGFVKVQV-----GNQVLKTKICPTP 490
R ++Y+ + L V V +A+++VP D N L + +VK+++ KTK +
Sbjct: 160 RGRIYIQAHIDREVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKS- 218
Query: 491 TTNPLWNEDLVFVAAEPFEE-QLFLTVEDRVHASKDEVLGKISLPLHIFEK 540
+ NP WNE F E ++ +L + + D S+++ +G +S + +K
Sbjct: 219 SLNPEWNETFRFQLKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQK 269
Score = 31.2 bits (69), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 8/63 (12%)
Query: 613 ILEVGILGAQGLLPMKMKDGRGSTDAYCIAKY-----GQKWVRTRTILDTFNPKWNEQYT 667
+L V + A+ L+PM D G +D Y K + +T+TI + NP+WNE +
Sbjct: 173 VLIVVVRDAKNLVPM---DPNGLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFR 229
Query: 668 WEV 670
+++
Sbjct: 230 FQL 232
>pdb|2NSQ|A Chain A, Crystal Structure Of The C2 Domain Of The Human E3
Ubiquitin-Protein Ligase Nedd4-Like Protein
Length = 155
Score = 56.2 bits (134), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 67/130 (51%), Gaps = 21/130 (16%)
Query: 287 LYVRVVKAKDLPPSSITGSCDPYVEVKMGNYKG---------RTKHFEKRMNPEWNQVFA 337
L V+VV DL I G+ DPYV++ + Y +TK +K +NP+WN+ F
Sbjct: 23 LRVKVVSGIDLAKKDIFGASDPYVKLSL--YVADENRELALVQTKTIKKTLNPKWNEEFY 80
Query: 338 FSKERIQSS----MLEVFLKDKEMVGRDDYLGRVAFDLNEVPTRVPP-DSPLAPQWYRLE 392
F R+ S + EVF D+ + RDD+LG+V L+ +PT P + P + + L
Sbjct: 81 F---RVNPSNHRLLFEVF--DENRLTRDDFLGQVDVPLSHLPTEDPTMERPYTFKDFLLR 135
Query: 393 DRRGEGKVRG 402
R + +V+G
Sbjct: 136 PRSHKSRVKG 145
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 66/139 (47%), Gaps = 18/139 (12%)
Query: 3 LVVEVVDAYDLMPKDGEGSASPFAEVDFLNQ-------LSKTKTIPKNLNPVWNQKLLFD 55
L V+VV DL KD G++ P+ ++ L +TKTI K LNP WN++ F
Sbjct: 23 LRVKVVSGIDLAKKDIFGASDPYVKLSLYVADENRELALVQTKTIKKTLNPKWNEEFYF- 81
Query: 56 FDQTKSHNHLRIEVSIYHHERRPIPGRHFLGRVRIPCSNLVRKGEEV-----YQRFPLEK 110
+ NH R+ ++ R + FLG+V +P S+L + + ++ F L
Sbjct: 82 --RVNPSNH-RLLFEVFDENR--LTRDDFLGQVDVPLSHLPTEDPTMERPYTFKDFLLRP 136
Query: 111 KWFLSSVKGEVGLKIYISP 129
+ S VKG + LK+ P
Sbjct: 137 RSHKSRVKGFLRLKMAYMP 155
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 63/146 (43%), Gaps = 26/146 (17%)
Query: 613 ILEVGILGAQGLLPMKMKDGRGSTDAYC-----IAKYGQKW--VRTRTILDTFNPKWNEQ 665
IL V ++ + + KD G++D Y +A ++ V+T+TI T NPKWNE+
Sbjct: 22 ILRVKVVSG---IDLAKKDIFGASDPYVKLSLYVADENRELALVQTKTIKKTLNPKWNEE 78
Query: 666 YTWEVYDPCTVITLGVFDNCHLGGGEKQNGSSAVRDSRIGKVRIRLSTLEA-----HRIY 720
+ + V + VFD L RD +G+V + LS L R Y
Sbjct: 79 FYFRVNPSNHRLLFEVFDENRL-----------TRDDFLGQVDVPLSHLPTEDPTMERPY 127
Query: 721 THSYPLLVLHPHGVKKMGELQLAIRF 746
T LL H + G L+L + +
Sbjct: 128 TFKDFLLRPRSHKSRVKGFLRLKMAY 153
Score = 37.4 bits (85), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 7/92 (7%)
Query: 450 LRVNVIEAQDIVPNDRNRLPEGFVKVQ--VGNQVLKTKICPTPTT----NPLWNEDLVFV 503
LRV V+ D+ D + +VK+ V ++ + + T T NP WNE+ F
Sbjct: 23 LRVKVVSGIDLAKKDIFGASDPYVKLSLYVADENRELALVQTKTIKKTLNPKWNEEFYF- 81
Query: 504 AAEPFEEQLFLTVEDRVHASKDEVLGKISLPL 535
P +L V D ++D+ LG++ +PL
Sbjct: 82 RVNPSNHRLLFEVFDENRLTRDDFLGQVDVPL 113
>pdb|1DQV|A Chain A, Crystal Structure Of Synaptotagmin Iii C2aC2B
Length = 296
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 71/254 (27%), Positives = 105/254 (41%), Gaps = 47/254 (18%)
Query: 287 LYVRVVKAKDLPPSSITGSCDPYVEVKM---GNYKGRTKHFEKRMNPEWNQVFAFSK--E 341
L VR+++A DLP G DPYV++ + K +TK K +NP +N+ F FS
Sbjct: 22 LVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLA 81
Query: 342 RIQSSMLEVFLKDKEMVGRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLEDRRGEGKVR 401
+ L + D + R D +G+V D PPD PL W + + E
Sbjct: 82 ELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPL---WRDILEGGSE---- 134
Query: 402 GQTMLAIWMGTQADEAFAEAWHSDASSVYGEGVFNIRSKVYVSPKLWYLRVNVIEAQDIV 461
+AD GE F++ Y+ P L V +I+A ++
Sbjct: 135 -----------KAD--------------LGELNFSL---CYL-PTAGLLTVTIIKASNLK 165
Query: 462 PNDRNRLPEGFVKVQV---GNQVLKTKICPTPTT-NPLWNEDLVF-VAAEPFEE-QLFLT 515
D + +VK + G ++ K K T NP +NE LVF VA E E L +
Sbjct: 166 AMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIA 225
Query: 516 VEDRVHASKDEVLG 529
V D +EV+G
Sbjct: 226 VVDYDCIGHNEVIG 239
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 61/244 (25%), Positives = 103/244 (42%), Gaps = 55/244 (22%)
Query: 450 LRVNVIEAQDIVPNDRNRLPEGFVKVQV---GNQVLKTKICPTPTTNPLWNEDLVFVA-- 504
L V +++A D+ D N + +VK+ + + +TK+ T NP++NE F
Sbjct: 22 LVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKV-HRKTLNPIFNETFQFSVPL 80
Query: 505 AEPFEEQLFLTVEDRVHASKDEVLGKISLP--LHIFEKRLDHRPVHSRWFNLEKFGFGAI 562
AE + +L +V D S+ +++G++ L L + E+ D RP+ W
Sbjct: 81 AELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPD-RPL---W----------- 125
Query: 563 EADRRKELKFSSRVHLRVCLEGGYHVLDESTMYISDQRPTAKQLWKPPVGILEVGILGAQ 622
R LEGG D + S + P G+L V I+ A
Sbjct: 126 ----------------RDILEGGSEKADLGELNFS-------LCYLPTAGLLTVTIIKAS 162
Query: 623 GLLPMKMKDGRGSTDAYCIAKY---GQKWVRTRTIL--DTFNPKWNEQYTWEVYDPCTVI 677
L M D G +D Y A G++ + +T + +T NP +NE ++V P +V
Sbjct: 163 NLKAM---DLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVA-PESVE 218
Query: 678 TLGV 681
+G+
Sbjct: 219 NVGL 222
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Query: 2 KLVVEVVDAYDLMPKDGEGSASPFAEVDFLNQLSK---TKTIPKNLNPVWNQKLLF 54
+LVV ++ A DL KD G + P+ ++ L K TK K LNP++N+ F
Sbjct: 21 QLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQF 76
Score = 33.5 bits (75), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 5/58 (8%)
Query: 3 LVVEVVDAYDLMPKDGEGSASPFAEVDFLNQ---LSKTKT-IPKN-LNPVWNQKLLFD 55
L V ++ A +L D G + P+ + +++ L K KT I KN LNP +N+ L+FD
Sbjct: 154 LTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFD 211
>pdb|3HN8|A Chain A, Crystal Structure Of Synaptotagmin
pdb|3HN8|B Chain B, Crystal Structure Of Synaptotagmin
pdb|3HN8|C Chain C, Crystal Structure Of Synaptotagmin
Length = 296
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 71/254 (27%), Positives = 105/254 (41%), Gaps = 47/254 (18%)
Query: 287 LYVRVVKAKDLPPSSITGSCDPYVEVKM---GNYKGRTKHFEKRMNPEWNQVFAFSK--E 341
L VR+++A DLP G DPYV++ + K +TK K +NP +N+ F FS
Sbjct: 23 LVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLA 82
Query: 342 RIQSSMLEVFLKDKEMVGRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLEDRRGEGKVR 401
+ L + D + R D +G+V D PPD PL W + + E
Sbjct: 83 ELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPL---WRDILEGGSE---- 135
Query: 402 GQTMLAIWMGTQADEAFAEAWHSDASSVYGEGVFNIRSKVYVSPKLWYLRVNVIEAQDIV 461
+AD GE F++ Y+ P L V +I+A ++
Sbjct: 136 -----------KAD--------------LGELNFSL---CYL-PTAGLLTVTIIKASNLK 166
Query: 462 PNDRNRLPEGFVKVQV---GNQVLKTKICPTPTT-NPLWNEDLVF-VAAEPFEE-QLFLT 515
D + +VK + G ++ K K T NP +NE LVF VA E E L +
Sbjct: 167 AMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIA 226
Query: 516 VEDRVHASKDEVLG 529
V D +EV+G
Sbjct: 227 VVDYDCIGHNEVIG 240
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 61/244 (25%), Positives = 103/244 (42%), Gaps = 55/244 (22%)
Query: 450 LRVNVIEAQDIVPNDRNRLPEGFVKVQV---GNQVLKTKICPTPTTNPLWNEDLVFVA-- 504
L V +++A D+ D N + +VK+ + + +TK+ T NP++NE F
Sbjct: 23 LVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKV-HRKTLNPIFNETFQFSVPL 81
Query: 505 AEPFEEQLFLTVEDRVHASKDEVLGKISLP--LHIFEKRLDHRPVHSRWFNLEKFGFGAI 562
AE + +L +V D S+ +++G++ L L + E+ D RP+ W
Sbjct: 82 AELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPD-RPL---W----------- 126
Query: 563 EADRRKELKFSSRVHLRVCLEGGYHVLDESTMYISDQRPTAKQLWKPPVGILEVGILGAQ 622
R LEGG D + S + P G+L V I+ A
Sbjct: 127 ----------------RDILEGGSEKADLGELNFS-------LCYLPTAGLLTVTIIKAS 163
Query: 623 GLLPMKMKDGRGSTDAYCIAKY---GQKWVRTRTIL--DTFNPKWNEQYTWEVYDPCTVI 677
L M D G +D Y A G++ + +T + +T NP +NE ++V P +V
Sbjct: 164 NLKAM---DLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVA-PESVE 219
Query: 678 TLGV 681
+G+
Sbjct: 220 NVGL 223
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Query: 2 KLVVEVVDAYDLMPKDGEGSASPFAEVDFLNQLSK---TKTIPKNLNPVWNQKLLF 54
+LVV ++ A DL KD G + P+ ++ L K TK K LNP++N+ F
Sbjct: 22 QLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQF 77
Score = 33.5 bits (75), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 5/58 (8%)
Query: 3 LVVEVVDAYDLMPKDGEGSASPFAEVDFLNQ---LSKTKT-IPKN-LNPVWNQKLLFD 55
L V ++ A +L D G + P+ + +++ L K KT I KN LNP +N+ L+FD
Sbjct: 155 LTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFD 212
>pdb|1DSY|A Chain A, C2 Domain From Protein Kinase C (Alpha) Complexed With
Ca2+ And Phosphatidylserine
Length = 139
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 59/111 (53%), Gaps = 12/111 (10%)
Query: 287 LYVRVVKAKDLPPSSITGSCDPYVEVKM-----GNYKGRTKHFEKRMNPEWNQVFAFS-K 340
L+V V AK+L P G DPYV++K+ K +TK +NP+WN+ F F K
Sbjct: 19 LHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKLK 78
Query: 341 ERIQSSMLEVFLKDKEMVGRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRL 391
+ L V + D + R+D++G ++F ++E+ ++P A WY+L
Sbjct: 79 PSDKDRRLSVEIWDWDRTTRNDFMGSLSFGVSEL-MKMP-----ASGWYKL 123
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 45/101 (44%), Gaps = 9/101 (8%)
Query: 2 KLVVEVVDAYDLMPKDGEGSASPFAEVDFL-----NQLSKTKTIPKNLNPVWNQKLLFDF 56
KL V V DA +L+P D G + P+ ++ + KTKTI LNP WN+ F
Sbjct: 18 KLHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKL 77
Query: 57 DQTKSHNHLRIEVSIYHHERRPIPGRHFLGRVRIPCSNLVR 97
+ L +E+ + R F+G + S L++
Sbjct: 78 KPSDKDRRLSVEIWDWDRTTR----NDFMGSLSFGVSELMK 114
Score = 36.6 bits (83), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 48/91 (52%), Gaps = 9/91 (9%)
Query: 450 LRVNVIEAQDIVPNDRNRLPEGFVKVQV-----GNQVLKTKICPTPTTNPLWNEDLVFVA 504
L V V +A++++P D N L + +VK+++ KTK + T NP WNE F
Sbjct: 19 LHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIRS-TLNPQWNESFTF-K 76
Query: 505 AEPFEEQLFLTVE--DRVHASKDEVLGKISL 533
+P ++ L+VE D ++++ +G +S
Sbjct: 77 LKPSDKDRRLSVEIWDWDRTTRNDFMGSLSF 107
Score = 36.2 bits (82), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 8/62 (12%)
Query: 614 LEVGILGAQGLLPMKMKDGRGSTDAYCIAKY-----GQKWVRTRTILDTFNPKWNEQYTW 668
L V + A+ L+PM D G +D Y K + +T+TI T NP+WNE +T+
Sbjct: 19 LHVTVRDAKNLIPM---DPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTF 75
Query: 669 EV 670
++
Sbjct: 76 KL 77
>pdb|3GPE|A Chain A, Crystal Structure Analysis Of Pkc (Alpha)-C2 Domain
Complexed With Ca2+ And Ptdins(4,5)p2
pdb|3RDJ|A Chain A, Rat Pkc C2 Domain Apo
pdb|3TWY|A Chain A, Rat Pkc C2 Domain Bound To Pb
Length = 137
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 59/111 (53%), Gaps = 12/111 (10%)
Query: 287 LYVRVVKAKDLPPSSITGSCDPYVEVKM-----GNYKGRTKHFEKRMNPEWNQVFAFS-K 340
L+V V AK+L P G DPYV++K+ K +TK +NP+WN+ F F K
Sbjct: 18 LHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKLK 77
Query: 341 ERIQSSMLEVFLKDKEMVGRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRL 391
+ L V + D + R+D++G ++F ++E+ ++P A WY+L
Sbjct: 78 PSDKDRRLSVEIWDWDRTTRNDFMGSLSFGVSEL-MKMP-----ASGWYKL 122
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 45/101 (44%), Gaps = 9/101 (8%)
Query: 2 KLVVEVVDAYDLMPKDGEGSASPFAEVDFL-----NQLSKTKTIPKNLNPVWNQKLLFDF 56
KL V V DA +L+P D G + P+ ++ + KTKTI LNP WN+ F
Sbjct: 17 KLHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKL 76
Query: 57 DQTKSHNHLRIEVSIYHHERRPIPGRHFLGRVRIPCSNLVR 97
+ L +E+ + R F+G + S L++
Sbjct: 77 KPSDKDRRLSVEIWDWDRTTR----NDFMGSLSFGVSELMK 113
Score = 36.6 bits (83), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 48/91 (52%), Gaps = 9/91 (9%)
Query: 450 LRVNVIEAQDIVPNDRNRLPEGFVKVQV-----GNQVLKTKICPTPTTNPLWNEDLVFVA 504
L V V +A++++P D N L + +VK+++ KTK + T NP WNE F
Sbjct: 18 LHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIRS-TLNPQWNESFTF-K 75
Query: 505 AEPFEEQLFLTVE--DRVHASKDEVLGKISL 533
+P ++ L+VE D ++++ +G +S
Sbjct: 76 LKPSDKDRRLSVEIWDWDRTTRNDFMGSLSF 106
Score = 36.2 bits (82), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 8/62 (12%)
Query: 614 LEVGILGAQGLLPMKMKDGRGSTDAYCIAKY-----GQKWVRTRTILDTFNPKWNEQYTW 668
L V + A+ L+PM D G +D Y K + +T+TI T NP+WNE +T+
Sbjct: 18 LHVTVRDAKNLIPM---DPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTF 74
Query: 669 EV 670
++
Sbjct: 75 KL 76
>pdb|3KWT|A Chain A, Munc13-1 C2b-Domain, Calcium-Free
pdb|3KWU|A Chain A, Munc13-1 C2b-Domain, Calcium Bound
Length = 148
Score = 55.1 bits (131), Expect = 2e-07, Method: Composition-based stats.
Identities = 40/133 (30%), Positives = 61/133 (45%), Gaps = 23/133 (17%)
Query: 289 VRVVKAKDLPPSSITGSCDPYVEVKMGNYKGRTKHFEKRMNPEWNQVFAF----SKERIQ 344
+ VV A+ L TGS DPYV V++G K RTK +NP W + F F S +RI+
Sbjct: 21 ITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGNLNPVWEENFHFECHNSSDRIK 80
Query: 345 SSMLEVFLKDKEMVGR---------DDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLEDRR 395
+L+ +D ++ R DD+LG+ ++ + + WY L+ R
Sbjct: 81 VRVLD---EDDDIKSRVKQRFKRESDDFLGQTIIEVRTLSGEM-------DVWYNLDKRT 130
Query: 396 GEGKVRGQTMLAI 408
+ V G L I
Sbjct: 131 DKSAVSGAIRLHI 143
Score = 47.0 bits (110), Expect = 5e-05, Method: Composition-based stats.
Identities = 37/131 (28%), Positives = 58/131 (44%), Gaps = 8/131 (6%)
Query: 2 KLVVEVVDAYDLMPKDGEGSASPFAEVDFLNQLSKTKTIPKNLNPVWNQKLLFDFDQTKS 61
K+ + VV A L KD GS+ P+ V +TKTI NLNPVW + F+ +
Sbjct: 18 KISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGNLNPVWEENFHFECHNSSD 77
Query: 62 HNHLRI-----EVSIYHHERRPIPGRHFLGRVRIPCSNLVRKGEEVYQRFPLEKKWFLSS 116
+R+ ++ +R FLG+ I L + + Y L+K+ S+
Sbjct: 78 RIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTLSGEMDVWYN---LDKRTDKSA 134
Query: 117 VKGEVGLKIYI 127
V G + L I +
Sbjct: 135 VSGAIRLHISV 145
Score = 45.4 bits (106), Expect = 2e-04, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Query: 614 LEVGILGAQGLLPMKMKDGRGSTDAYCIAKYGQKWVRTRTILDTFNPKWNEQYTWEVYDP 673
+ + ++ AQGL + KD GS+D Y + G+ RT+TI NP W E + +E ++
Sbjct: 19 ISITVVCAQGL---QAKDKTGSSDPYVTVQVGKTKKRTKTIYGNLNPVWEENFHFECHNS 75
Query: 674 CTVITLGVFD 683
I + V D
Sbjct: 76 SDRIKVRVLD 85
Score = 34.3 bits (77), Expect = 0.39, Method: Composition-based stats.
Identities = 30/134 (22%), Positives = 54/134 (40%), Gaps = 19/134 (14%)
Query: 435 FNIRSKVYVSPKLWYLRVN--VIEAQDIVPNDRNRLPEGFVKVQVGNQVLKTKICPTPTT 492
F ++ V W +++ V+ AQ + D+ + +V VQVG +TK
Sbjct: 2 FAVKQSVLDGTSKWSAKISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTI-YGNL 60
Query: 493 NPLWNEDLVF----------VAAEPFEEQLFLTVEDRVHASKDEVLGKISLPLHIFEKRL 542
NP+W E+ F V ++ + V+ R D+ LG+ + + +
Sbjct: 61 NPVWEENFHFECHNSSDRIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTLSGEM 120
Query: 543 DHRPVHSRWFNLEK 556
D W+NL+K
Sbjct: 121 D------VWYNLDK 128
>pdb|3B7Y|A Chain A, Crystal Structure Of The C2 Domain Of The E3 Ubiquitin-
Protein Ligase Nedd4
pdb|3B7Y|B Chain B, Crystal Structure Of The C2 Domain Of The E3 Ubiquitin-
Protein Ligase Nedd4
Length = 153
Score = 54.3 bits (129), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 65/135 (48%), Gaps = 10/135 (7%)
Query: 282 EQMSYLYVRVVKAKDLPPSSITGSCDPYVEVKMGN------YKGRTKHFEKRMNPEWNQV 335
E + VRV+ L I G+ DPYV V + + +TK +K +NP+WN+
Sbjct: 17 ENSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEE 76
Query: 336 FAFSKERIQSSML-EVFLKDKEMVGRDDYLGRVAFDLNEVPTRVPP-DSPLAPQWYRLED 393
F Q +L EVF D+ + RDD+LG+V L +PT P + P + + L
Sbjct: 77 ILFRVHPQQHRLLFEVF--DENRLTRDDFLGQVDVPLYPLPTENPRLERPYTFKDFVLHP 134
Query: 394 RRGEGKVRGQTMLAI 408
R + +V+G L +
Sbjct: 135 RSHKSRVKGYLRLKM 149
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 64/136 (47%), Gaps = 17/136 (12%)
Query: 5 VEVVDAYDLMPKDGEGSASPFAEVDFLNQLS------KTKTIPKNLNPVWNQKLLFDFDQ 58
V V+ L KD G++ P+ V + ++ +TKTI K+LNP WN+++LF +
Sbjct: 24 VRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILF---R 80
Query: 59 TKSHNHLRIEVSIYHHERRPIPGRHFLGRVRIPCSNLVRKGEEV-----YQRFPLEKKWF 113
H R+ ++ R + FLG+V +P L + + ++ F L +
Sbjct: 81 VHPQQH-RLLFEVFDENR--LTRDDFLGQVDVPLYPLPTENPRLERPYTFKDFVLHPRSH 137
Query: 114 LSSVKGEVGLKIYISP 129
S VKG + LK+ P
Sbjct: 138 KSRVKGYLRLKMTYLP 153
Score = 38.5 bits (88), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 65/145 (44%), Gaps = 25/145 (17%)
Query: 613 ILEVGILGAQGLLPMKMKDGRGSTDAYC-IAKYGQ-----KWVRTRTILDTFNPKWNEQY 666
I+ V ++ GL KD G++D Y + Y V+T+TI + NPKWNE+
Sbjct: 21 IVRVRVIAGIGL---AKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEI 77
Query: 667 TWEVYDPCTVITLGVFDNCHLGGGEKQNGSSAVRDSRIGKVRIRLSTL--EAHRI-YTHS 723
+ V+ + VFD L RD +G+V + L L E R+ ++
Sbjct: 78 LFRVHPQQHRLLFEVFDENRL-----------TRDDFLGQVDVPLYPLPTENPRLERPYT 126
Query: 724 YPLLVLHP--HGVKKMGELQLAIRF 746
+ VLHP H + G L+L + +
Sbjct: 127 FKDFVLHPRSHKSRVKGYLRLKMTY 151
Score = 35.4 bits (80), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 6/92 (6%)
Query: 450 LRVNVIEAQDIVPNDRNRLPEGFVKVQV---GNQVLKTKICPT--PTTNPLWNEDLVFVA 504
+RV VI + D + +V+V + N VL + T + NP WNE+++F
Sbjct: 22 VRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILF-R 80
Query: 505 AEPFEEQLFLTVEDRVHASKDEVLGKISLPLH 536
P + +L V D ++D+ LG++ +PL+
Sbjct: 81 VHPQQHRLLFEVFDENRLTRDDFLGQVDVPLY 112
>pdb|4DNL|A Chain A, Crystal Structure Of A C2 Domain Of A Protein Kinase C
Alpha (Prkca) From Homo Sapiens At 1.90 A Resolution
Length = 140
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 57/111 (51%), Gaps = 12/111 (10%)
Query: 287 LYVRVVKAKDLPPSSITGSCDPYVEVKM-----GNYKGRTKHFEKRMNPEWNQVFAFS-K 340
L+V V AK+L P G DPYV++K+ K +TK +NP+WN+ F F K
Sbjct: 20 LHVTVRDAKNLIPXDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKLK 79
Query: 341 ERIQSSMLEVFLKDKEMVGRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRL 391
+ L V + D + R+D+ G ++F ++E+ + P A WY+L
Sbjct: 80 PSDKDRRLSVEIWDWDRTTRNDFXGSLSFGVSEL-XKXP-----ASGWYKL 124
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 43/101 (42%), Gaps = 9/101 (8%)
Query: 2 KLVVEVVDAYDLMPKDGEGSASPFAEVDFL-----NQLSKTKTIPKNLNPVWNQKLLFDF 56
KL V V DA +L+P D G + P+ ++ + KTKTI LNP WN+ F
Sbjct: 19 KLHVTVRDAKNLIPXDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKL 78
Query: 57 DQTKSHNHLRIEVSIYHHERRPIPGRHFLGRVRIPCSNLVR 97
+ L +E+ + R F G + S L +
Sbjct: 79 KPSDKDRRLSVEIWDWDRTTR----NDFXGSLSFGVSELXK 115
Score = 35.8 bits (81), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 47/91 (51%), Gaps = 9/91 (9%)
Query: 450 LRVNVIEAQDIVPNDRNRLPEGFVKVQV-----GNQVLKTKICPTPTTNPLWNEDLVFVA 504
L V V +A++++P D N L + +VK+++ KTK + T NP WNE F
Sbjct: 20 LHVTVRDAKNLIPXDPNGLSDPYVKLKLIPDPKNESKQKTKTIRS-TLNPQWNESFTF-K 77
Query: 505 AEPFEEQLFLTVE--DRVHASKDEVLGKISL 533
+P ++ L+VE D ++++ G +S
Sbjct: 78 LKPSDKDRRLSVEIWDWDRTTRNDFXGSLSF 108
Score = 33.1 bits (74), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 8/62 (12%)
Query: 614 LEVGILGAQGLLPMKMKDGRGSTDAYCIAKY-----GQKWVRTRTILDTFNPKWNEQYTW 668
L V + A+ L+P D G +D Y K + +T+TI T NP+WNE +T+
Sbjct: 20 LHVTVRDAKNLIPX---DPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTF 76
Query: 669 EV 670
++
Sbjct: 77 KL 78
>pdb|3JZY|A Chain A, Crystal Structure Of Human Intersectin 2 C2 Domain
Length = 510
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 54/115 (46%)
Query: 287 LYVRVVKAKDLPPSSITGSCDPYVEVKMGNYKGRTKHFEKRMNPEWNQVFAFSKERIQSS 346
L V V++A +L G +PY E+ MG+ T+ + +NP+WN F + +
Sbjct: 389 LMVHVIEATELKACKPNGKSNPYCEISMGSQSYTTRTIQDTLNPKWNFNCQFFIKDLYQD 448
Query: 347 MLEVFLKDKEMVGRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLEDRRGEGKVR 401
+L + L D++ DD+LGR + ++ T P+ + E GE VR
Sbjct: 449 VLCLTLFDRDQFSPDDFLGRTEIPVAKIRTEQESKGPMTRRLLLHEVPTGEVWVR 503
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 55/117 (47%), Gaps = 3/117 (2%)
Query: 419 AEAWHSDASSVYGEGVFNIRSKVYVSPKLWYLRVNVIEAQDIVPNDRNRLPEGFVKVQVG 478
A + D E + RS+ + + L V+VIEA ++ N + ++ +G
Sbjct: 360 ASEQYIDTEKKQREKAYQARSQK--TSGIGRLMVHVIEATELKACKPNGKSNPYCEISMG 417
Query: 479 NQVLKTKICPTPTTNPLWNEDLVFVAAEPFEEQLFLTVEDRVHASKDEVLGKISLPL 535
+Q T+ T NP WN + F + +++ L LT+ DR S D+ LG+ +P+
Sbjct: 418 SQSYTTRTI-QDTLNPKWNFNCQFFIKDLYQDVLCLTLFDRDQFSPDDFLGRTEIPV 473
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 57/121 (47%), Gaps = 9/121 (7%)
Query: 2 KLVVEVVDAYDLMPKDGEGSASPFAEVDFLNQLSKTKTIPKNLNPVWNQKLLFDFDQTKS 61
+L+V V++A +L G ++P+ E+ +Q T+TI LNP WN F F +
Sbjct: 388 RLMVHVIEATELKACKPNGKSNPYCEISMGSQSYTTRTIQDTLNPKWNFNCQF-FIKDLY 446
Query: 62 HNHLRIEVSIYHHERRPIPGRHFLGRVRIPCSNLVRKGEEVYQRFPLEKKWFLSSV-KGE 120
+ L + + +R FLGR IP + + + E + P+ ++ L V GE
Sbjct: 447 QDVLCLTL----FDRDQFSPDDFLGRTEIPVAKIRTEQE---SKGPMTRRLLLHEVPTGE 499
Query: 121 V 121
V
Sbjct: 500 V 500
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 36/74 (48%), Gaps = 4/74 (5%)
Query: 611 VGILEVGILGAQGLLPMKMKDGRGSTDAYCIAKYGQKWVRTRTILDTFNPKWNEQYTWEV 670
+G L V ++ A L K G ++ YC G + TRTI DT NPKWN + +
Sbjct: 386 IGRLMVHVIEATELKACK---PNGKSNPYCEISMGSQSYTTRTIQDTLNPKWNFNCQFFI 442
Query: 671 YDPCT-VITLGVFD 683
D V+ L +FD
Sbjct: 443 KDLYQDVLCLTLFD 456
>pdb|3M7F|B Chain B, Crystal Structure Of The Nedd4 C2GRB10 SH2 COMPLEX
Length = 176
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 64/131 (48%), Gaps = 16/131 (12%)
Query: 289 VRVVKAKDLPPSSITGSCDPYVEVKMGNYKG------RTKHFEKRMNPEWNQVFAF---- 338
V+V+ L I G+ DPYV V + + +TK +K +NP+WN+ F
Sbjct: 12 VKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFRVLP 71
Query: 339 SKERIQSSMLEVFLKDKEMVGRDDYLGRVAFDLNEVPTRVPP-DSPLAPQWYRLEDRRGE 397
+ RI + EVF D+ + RDD+LG+V L +PT P + P + + L R +
Sbjct: 72 QRHRI---LFEVF--DENRLTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHPRSHK 126
Query: 398 GKVRGQTMLAI 408
+V+G L +
Sbjct: 127 SRVKGYLRLKM 137
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 67/138 (48%), Gaps = 17/138 (12%)
Query: 5 VEVVDAYDLMPKDGEGSASPFAEVDFLNQLS------KTKTIPKNLNPVWNQKLLFDFDQ 58
V+V+ L KD G++ P+ V + +S +TKTI K+LNP WN+++LF +
Sbjct: 12 VKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILF---R 68
Query: 59 TKSHNHLRIEVSIYHHERRPIPGRHFLGRVRIPCSNLVRKGEEV-----YQRFPLEKKWF 113
H RI ++ R + FLG+V +P L + + ++ F L +
Sbjct: 69 VLPQRH-RILFEVFDENR--LTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHPRSH 125
Query: 114 LSSVKGEVGLKIYISPQS 131
S VKG + LK+ P++
Sbjct: 126 KSRVKGYLRLKMTYLPKN 143
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 62/147 (42%), Gaps = 29/147 (19%)
Query: 613 ILEVGILGAQGLLPMKMKDGRGSTDAYC-IAKYGQ-----KWVRTRTILDTFNPKWNEQY 666
++ V ++ GL KD G++D Y + Y V+T+TI + NPKWNE+
Sbjct: 9 VVRVKVIAGIGL---AKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEI 65
Query: 667 TWEVYDPCTVITLGVFDNCHLGGGEKQNGSSAVRDSRIGKVRIRLSTLEA-----HRIYT 721
+ V I VFD L RD +G+V + L L R YT
Sbjct: 66 LFRVLPQRHRILFEVFDENRL-----------TRDDFLGQVDVPLYPLPTENPRMERPYT 114
Query: 722 HSYPLLVLHP--HGVKKMGELQLAIRF 746
+ VLHP H + G L+L + +
Sbjct: 115 --FKDFVLHPRSHKSRVKGYLRLKMTY 139
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 491 TTNPLWNEDLVFVAAEPFEEQLFLTVEDRVHASKDEVLGKISLPLH 536
+ NP WNE+++F P ++ V D ++D+ LG++ +PL+
Sbjct: 56 SLNPKWNEEILFRVL-PQRHRILFEVFDENRLTRDDFLGQVDVPLY 100
>pdb|2CHD|A Chain A, Crystal Structure Of The C2a Domain Of Rabphilin-3a
Length = 142
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 54/109 (49%), Gaps = 10/109 (9%)
Query: 274 FTSTYDLVEQMSYLYVRVVKAKDLPPSSITGSCDPYVEVKM-----GNYKGRTKHFEKRM 328
F+ YD + S L +++AK L P G DPYV++ + + K RTK
Sbjct: 20 FSLLYD--QDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTR 77
Query: 329 NPEWNQVFAF---SKERIQSSMLEVFLKDKEMVGRDDYLGRVAFDLNEV 374
NP WN+ + ++E +Q L + + D++ G ++++G F L ++
Sbjct: 78 NPVWNETLQYHGITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKL 126
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
Query: 3 LVVEVVDAYDLMPKDGEGSASPFAEVDFLNQLSK-----TKTIPKNLNPVWNQKLLF 54
L ++ A L P D G A P+ ++ L SK TKT+ NPVWN+ L +
Sbjct: 31 LQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQY 87
Score = 35.0 bits (79), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 39/173 (22%), Positives = 72/173 (41%), Gaps = 45/173 (26%)
Query: 419 AEAWHSDASSVYGEGVFNIRSKVYVSPKLWYLRVNVIEAQDIVPNDRNRLPEGFVKVQV- 477
A ++ SD ++ G F++ +Y L+ +I A+ + P D N L + +VK+ +
Sbjct: 4 ANSYDSDQATTLGALEFSL---LYDQDN-SNLQCTIIRAKGLKPMDSNGLADPYVKLHLL 59
Query: 478 ----GNQVLKTKICPTPTTNPLWNEDLVFVAAEPFEEQLFLTVEDRVHASKDEVLGKISL 533
+ L+TK T NP+WNE L + H +E + + +L
Sbjct: 60 PGASKSNKLRTKTLRN-TRNPVWNETLQY------------------HGITEEDMQRKTL 100
Query: 534 PLHIFEKRLDHRPVHSRWFNLEKFGFGAIEADRR---KELKFSSRVHLRVCLE 583
+ + ++ +KFG + R K+LK + R + +CLE
Sbjct: 101 RISVCDE--------------DKFGHNEFIGETRFSLKKLKANQRKNFNICLE 139
Score = 34.7 bits (78), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 37/88 (42%), Gaps = 13/88 (14%)
Query: 591 ESTMYISDQRPTAKQL-----WKPPVGILEVGILGAQGLLPMKMKDGRGSTDAYCI---- 641
E+ Y SDQ T L + L+ I+ A+GL PM D G D Y
Sbjct: 3 EANSYDSDQATTLGALEFSLLYDQDNSNLQCTIIRAKGLKPM---DSNGLADPYVKLHLL 59
Query: 642 -AKYGQKWVRTRTILDTFNPKWNEQYTW 668
+RT+T+ +T NP WNE +
Sbjct: 60 PGASKSNKLRTKTLRNTRNPVWNETLQY 87
>pdb|2K3H|A Chain A, Structural Determinants For Ca2+ And Pip2 Binding By The
C2a Domain Of Rabphilin-3a
Length = 140
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 54/109 (49%), Gaps = 10/109 (9%)
Query: 274 FTSTYDLVEQMSYLYVRVVKAKDLPPSSITGSCDPYVEVKM-----GNYKGRTKHFEKRM 328
F+ YD + S L +++AK L P G DPYV++ + + K RTK
Sbjct: 18 FSLLYD--QDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTR 75
Query: 329 NPEWNQVFAF---SKERIQSSMLEVFLKDKEMVGRDDYLGRVAFDLNEV 374
NP WN+ + ++E +Q L + + D++ G ++++G F L ++
Sbjct: 76 NPVWNETLQYHGITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKL 124
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
Query: 3 LVVEVVDAYDLMPKDGEGSASPFAEVDFLNQLSK-----TKTIPKNLNPVWNQKLLF 54
L ++ A L P D G A P+ ++ L SK TKT+ NPVWN+ L +
Sbjct: 29 LQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQY 85
Score = 34.7 bits (78), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 39/173 (22%), Positives = 72/173 (41%), Gaps = 45/173 (26%)
Query: 419 AEAWHSDASSVYGEGVFNIRSKVYVSPKLWYLRVNVIEAQDIVPNDRNRLPEGFVKVQV- 477
A ++ SD ++ G F++ +Y L+ +I A+ + P D N L + +VK+ +
Sbjct: 2 ANSYDSDEATTLGALEFSL---LYDQDN-SNLQCTIIRAKGLKPMDSNGLADPYVKLHLL 57
Query: 478 ----GNQVLKTKICPTPTTNPLWNEDLVFVAAEPFEEQLFLTVEDRVHASKDEVLGKISL 533
+ L+TK T NP+WNE L + H +E + + +L
Sbjct: 58 PGASKSNKLRTKTLRN-TRNPVWNETLQY------------------HGITEEDMQRKTL 98
Query: 534 PLHIFEKRLDHRPVHSRWFNLEKFGFGAIEADRR---KELKFSSRVHLRVCLE 583
+ + ++ +KFG + R K+LK + R + +CLE
Sbjct: 99 RISVCDE--------------DKFGHNEFIGETRFSLKKLKANQRKNFNICLE 137
Score = 33.5 bits (75), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 37/88 (42%), Gaps = 13/88 (14%)
Query: 591 ESTMYISDQRPTAKQL-----WKPPVGILEVGILGAQGLLPMKMKDGRGSTDAYCI---- 641
E+ Y SD+ T L + L+ I+ A+GL PM D G D Y
Sbjct: 1 EANSYDSDEATTLGALEFSLLYDQDNSNLQCTIIRAKGLKPM---DSNGLADPYVKLHLL 57
Query: 642 -AKYGQKWVRTRTILDTFNPKWNEQYTW 668
+RT+T+ +T NP WNE +
Sbjct: 58 PGASKSNKLRTKTLRNTRNPVWNETLQY 85
>pdb|2BWQ|A Chain A, Crystal Structure Of The Rim2 C2a-Domain At 1.4 Angstrom
Resolution
Length = 129
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 59/116 (50%), Gaps = 16/116 (13%)
Query: 287 LYVRVVKAKDLPPSSITGSCDPYVEV-----KMGNYKGRTKHFEKRMNPEWNQVFAFS-- 339
L V ++ AKDLP +PYV++ + K RTK +K + P+WNQ F +S
Sbjct: 20 LIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPV 79
Query: 340 -KERIQSSMLEVFLKDKEMVGRD--DYLGRVAFDLNEVPTRVPPDSPLAPQWYRLE 392
+ + MLE+ L D+ V + ++LG + L E+ T + D P WY+L+
Sbjct: 80 HRREFRERMLEITLWDQARVREEESEFLGEI---LIELETALLDDE---PHWYKLQ 129
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 45/94 (47%), Gaps = 5/94 (5%)
Query: 2 KLVVEVVDAYDLMPKDGEGSASPFAEVDFLNQLS-----KTKTIPKNLNPVWNQKLLFDF 56
+L+V ++ A DL ++ +P+ ++ FL S +TKT+ K L P WNQ ++
Sbjct: 19 QLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSP 78
Query: 57 DQTKSHNHLRIEVSIYHHERRPIPGRHFLGRVRI 90
+ +E++++ R FLG + I
Sbjct: 79 VHRREFRERMLEITLWDQARVREEESEFLGEILI 112
>pdb|3N5A|A Chain A, Synaptotagmin-7, C2b-Domain, Calcium Bound
Length = 138
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 65/122 (53%), Gaps = 18/122 (14%)
Query: 287 LYVRVVKAKDLPPSSITGSCDPYVEVKMGNYKGR------TKHFEKRMNPEWNQVFAFS- 339
+ V ++KA++L I G+ DPYV+V + YK + T ++ +NP +N+ FAF
Sbjct: 18 IIVNIIKARNLKAMDIGGTSDPYVKVWLM-YKDKRVEKKKTVTKKRNLNPIFNESFAFDI 76
Query: 340 -KERIQSSMLEVFLKDKEMVGRDDYLGRVAFDLNEVPTRVP--------PDSPLAPQWYR 390
E+++ + + + + DK+ + R+D +G++ P V P P+A QW++
Sbjct: 77 PTEKLRETTIIITVMDKDKLSRNDVIGKIYLSWKSGPGEVKHWKDMIARPRQPVA-QWHQ 135
Query: 391 LE 392
L+
Sbjct: 136 LK 137
Score = 31.2 bits (69), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 6/88 (6%)
Query: 452 VNVIEAQDIVPNDRNRLPEGFVKVQV----GNQVLKTKICPTPTTNPLWNEDLVF-VAAE 506
VN+I+A+++ D + +VKV + K + NP++NE F + E
Sbjct: 20 VNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFDIPTE 79
Query: 507 PFEEQ-LFLTVEDRVHASKDEVLGKISL 533
E + +TV D+ S+++V+GKI L
Sbjct: 80 KLRETTIIITVMDKDKLSRNDVIGKIYL 107
Score = 30.4 bits (67), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 5/63 (7%)
Query: 3 LVVEVVDAYDLMPKDGEGSASPFAEV-----DFLNQLSKTKTIPKNLNPVWNQKLLFDFD 57
++V ++ A +L D G++ P+ +V D + KT T +NLNP++N+ FD
Sbjct: 18 IIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFDIP 77
Query: 58 QTK 60
K
Sbjct: 78 TEK 80
>pdb|1V27|A Chain A, Solution Structure Of The First C2 Domain Of Rim2
Length = 141
Score = 49.7 bits (117), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 59/116 (50%), Gaps = 16/116 (13%)
Query: 287 LYVRVVKAKDLPPSSITGSCDPYVEV-----KMGNYKGRTKHFEKRMNPEWNQVFAFS-- 339
L V ++ AKDLP +PYV++ + K RTK +K + P+WNQ F +S
Sbjct: 23 LIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPV 82
Query: 340 -KERIQSSMLEVFLKDKEMVGRD--DYLGRVAFDLNEVPTRVPPDSPLAPQWYRLE 392
+ + MLE+ L D+ V + ++LG + L E+ T + D P WY+L+
Sbjct: 83 HRREFRERMLEITLWDQARVREEESEFLGEI---LIELETALLDDE---PHWYKLQ 132
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 45/94 (47%), Gaps = 5/94 (5%)
Query: 2 KLVVEVVDAYDLMPKDGEGSASPFAEVDFLNQLS-----KTKTIPKNLNPVWNQKLLFDF 56
+L+V ++ A DL ++ +P+ ++ FL S +TKT+ K L P WNQ ++
Sbjct: 22 QLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSP 81
Query: 57 DQTKSHNHLRIEVSIYHHERRPIPGRHFLGRVRI 90
+ +E++++ R FLG + I
Sbjct: 82 VHRREFRERMLEITLWDQARVREEESEFLGEILI 115
>pdb|2UZP|A Chain A, Crystal Structure Of The C2 Domain Of Human Protein Kinase
C Gamma.
pdb|2UZP|B Chain B, Crystal Structure Of The C2 Domain Of Human Protein Kinase
C Gamma.
pdb|2UZP|C Chain C, Crystal Structure Of The C2 Domain Of Human Protein Kinase
C Gamma
Length = 144
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 59/111 (53%), Gaps = 12/111 (10%)
Query: 287 LYVRVVKAKDLPPSSITGSCDPYVEVKM-----GNYKGRTKHFEKRMNPEWNQVFAFS-K 340
++V V +A++L P G DPYV++K+ K +T+ + +NP WN+ F F+ K
Sbjct: 22 IHVTVGEARNLIPMDPNGLSDPYVKLKLIPDPRNLTKQKTRTVKATLNPVWNETFVFNLK 81
Query: 341 ERIQSSMLEVFLKDKEMVGRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRL 391
L V + D + R+D++G ++F ++E+ + P D WY+L
Sbjct: 82 PGDVERRLSVEVWDWDRTSRNDFMGAMSFGVSEL-LKAPVDG-----WYKL 126
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 45/98 (45%), Gaps = 9/98 (9%)
Query: 5 VEVVDAYDLMPKDGEGSASPFAEVDFLNQ-----LSKTKTIPKNLNPVWNQKLLFDFDQT 59
V V +A +L+P D G + P+ ++ + KT+T+ LNPVWN+ +F+
Sbjct: 24 VTVGEARNLIPMDPNGLSDPYVKLKLIPDPRNLTKQKTRTVKATLNPVWNETFVFNLKPG 83
Query: 60 KSHNHLRIEVSIYHHERRPIPGRHFLGRVRIPCSNLVR 97
L +EV + R F+G + S L++
Sbjct: 84 DVERRLSVEVWDWDRTSR----NDFMGAMSFGVSELLK 117
Score = 37.4 bits (85), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 46/89 (51%), Gaps = 5/89 (5%)
Query: 450 LRVNVIEAQDIVPNDRNRLPEGFVKVQV----GNQVLKTKICPTPTTNPLWNEDLVF-VA 504
+ V V EA++++P D N L + +VK+++ N + T NP+WNE VF +
Sbjct: 22 IHVTVGEARNLIPMDPNGLSDPYVKLKLIPDPRNLTKQKTRTVKATLNPVWNETFVFNLK 81
Query: 505 AEPFEEQLFLTVEDRVHASKDEVLGKISL 533
E +L + V D S+++ +G +S
Sbjct: 82 PGDVERRLSVEVWDWDRTSRNDFMGAMSF 110
>pdb|2R83|A Chain A, Crystal Structure Analysis Of Human Synaptotagmin 1
C2a-c2b
pdb|2R83|B Chain B, Crystal Structure Analysis Of Human Synaptotagmin 1
C2a-c2b
Length = 284
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 69/305 (22%), Positives = 122/305 (40%), Gaps = 64/305 (20%)
Query: 273 RFTSTYDLVEQMSYLYVRVVKAKDLPPSSITGSCDPYVEVKM---GNYKGRTKHFEKRMN 329
+++ YD Q + L V +++A +LP + G+ DPYV+V + K TK K +N
Sbjct: 9 QYSLDYDF--QNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLN 66
Query: 330 PEWNQVFAFS--KERIQSSMLEVFLKDKEMVGRDDYLGRVAFDLNEVPTRVPPDSPLAPQ 387
P +N+ F F + L + + D + + D +G +VP + +
Sbjct: 67 PVFNEQFTFKVPYSELAGKTLVMAVYDFDRFSKHDIIGEF-----KVPMNTVDFGHVTEE 121
Query: 388 WYRLEDRRGEGKVRGQTMLAIWMGTQADEAFAEAWHSDASSVYGEGVFNIRSKVYVSPKL 447
W L+ E + + G+ F++R YV P
Sbjct: 122 WRDLQSAEKEEQEK----------------------------LGDICFSLR---YV-PTA 149
Query: 448 WYLRVNVIEAQDIVPNDRNRLPEGFVKVQVGNQ----VLKTKICPTPTTNPLWNEDLVFV 503
L V ++EA+++ D L + +VK+ + K T NP +NE F
Sbjct: 150 GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFE 209
Query: 504 AAEPFEE----QLFLTVEDRVHASKDEVLGKISLPLHIFEKRLDH---------RPVHSR 550
PFE+ Q+ +TV D K++ +GK+ + + L H RP+ ++
Sbjct: 210 V--PFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPI-AQ 266
Query: 551 WFNLE 555
W L+
Sbjct: 267 WHTLQ 271
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 55/231 (23%), Positives = 93/231 (40%), Gaps = 51/231 (22%)
Query: 450 LRVNVIEAQDIVPNDRNRLPEGFVKVQV---GNQVLKTKICPTPTTNPLWNEDLVFVA-- 504
L V +I+A ++ D + +VKV + + +TK+ T NP++NE F
Sbjct: 21 LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVH-RKTLNPVFNEQFTFKVPY 79
Query: 505 AEPFEEQLFLTVEDRVHASKDEVLGKISLPLHIFEKRLDHRPVHSRWFNLEKFGFGAIEA 564
+E + L + V D SK +++G+ +P++ +D V W +L+ A
Sbjct: 80 SELAGKTLVMAVYDFDRFSKHDIIGEFKVPMNT----VDFGHVTEEWRDLQ-------SA 128
Query: 565 DRRKELKFSSRVHLRVCLEGGYHVLDESTMYISDQRPTAKQLWKPPVGILEVGILGAQGL 624
++ ++ K +C S Y+ P G L V IL A+ L
Sbjct: 129 EKEEQEKLGD-----ICF---------SLRYV------------PTAGKLTVVILEAKNL 162
Query: 625 LPMKMKDGRGSTDAYCIAKYGQKWVRTRTILDT-----FNPKWNEQYTWEV 670
M D G +D Y Q R + T NP +NE +++EV
Sbjct: 163 KKM---DVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEV 210
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 47/97 (48%), Gaps = 6/97 (6%)
Query: 2 KLVVEVVDAYDLMPKDGEGSASPFAEVDFLNQLSK---TKTIPKNLNPVWNQKLLFDFDQ 58
+L+V ++ A +L D G++ P+ +V L K TK K LNPV+N++ F
Sbjct: 20 QLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPY 79
Query: 59 TKSHNHLRIEVSIYHHERRPIPGRHFLGRVRIPCSNL 95
++ + +++Y +R +G ++P + +
Sbjct: 80 SELAGKTLV-MAVYDFDR--FSKHDIIGEFKVPMNTV 113
>pdb|1RLW|A Chain A, Calcium-Phospholipid Binding Domain From Cytosolic
Phospholipase A2
Length = 126
Score = 46.6 bits (109), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 37/66 (56%), Gaps = 4/66 (6%)
Query: 307 DPYVEVKMG---NYKGRTKHFEKRMNPEWNQVFAFSKERIQSSMLEVFLKDKEMVGRDDY 363
DPYVE+ + + + RT+HF +NP WN+ F F + Q ++LE+ L D V D+
Sbjct: 28 DPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANYV-MDET 86
Query: 364 LGRVAF 369
LG F
Sbjct: 87 LGTATF 92
>pdb|1BCI|A Chain A, C2 Domain Of Cytosolic Phospholipase A2, Nmr, Minimized
Average Structure
Length = 138
Score = 46.6 bits (109), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 4/90 (4%)
Query: 283 QMSYLYVRVVKAKDLPPSSITGSCDPYVEVKMG---NYKGRTKHFEKRMNPEWNQVFAFS 339
+ + + +R K + + DPYVE+ + + + RT+HF +NP WN+ F F
Sbjct: 19 KFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFI 78
Query: 340 KERIQSSMLEVFLKDKEMVGRDDYLGRVAF 369
+ Q ++LE+ L D V D+ LG F
Sbjct: 79 LDPNQENVLEITLMDANYV-MDETLGTATF 107
>pdb|1CJY|A Chain A, Human Cytosolic Phospholipase A2
pdb|1CJY|B Chain B, Human Cytosolic Phospholipase A2
Length = 749
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 48/95 (50%), Gaps = 4/95 (4%)
Query: 283 QMSYLYVRVVKAKDLPPSSITGSCDPYVEVKMG---NYKGRTKHFEKRMNPEWNQVFAFS 339
+ + + +R K + + DPYVE+ + + + RT+HF +NP WN+ F F
Sbjct: 19 KFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFI 78
Query: 340 KERIQSSMLEVFLKDKEMVGRDDYLGRVAFDLNEV 374
+ Q ++LE+ L D V D+ LG F ++ +
Sbjct: 79 LDPNQENVLEITLMDANYV-MDETLGTATFTVSSM 112
>pdb|2JQZ|A Chain A, Solution Structure Of The C2 Domain Of Human Smurf2
Length = 131
Score = 45.4 bits (106), Expect = 2e-04, Method: Composition-based stats.
Identities = 37/113 (32%), Positives = 58/113 (51%), Gaps = 8/113 (7%)
Query: 1 MKLVVEVVDAYDLMPKDGEGSASPFAEV--DFLNQLSKTKTIPKNLNPVWNQKLLFDFDQ 58
+KL + V+ A +L+ KD PFA+V D Q T T+ L+P WNQ +D
Sbjct: 3 VKLRLTVLCAKNLVKKDFFRLPDPFAKVVVDGSGQCHSTDTVKNTLDPKWNQH--YDLYI 60
Query: 59 TKSHNHLRIEVSIYHHER-RPIPGRHFLGRVRIPCSNLVRKGEEVYQRFPLEK 110
KS + + +S+++H++ G FLG VR+ + + R + YQR L K
Sbjct: 61 GKSDS---VTISVWNHKKIHKKQGAGFLGCVRLLSNAINRLKDTGYQRLDLCK 110
Score = 30.8 bits (68), Expect = 4.0, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 450 LRVNVIEAQDIVPNDRNRLPEGFVKVQV-GNQVLKTKICPTPTTNPLWNE 498
LR+ V+ A+++V D RLP+ F KV V G+ + T +P WN+
Sbjct: 5 LRLTVLCAKNLVKKDFFRLPDPFAKVVVDGSGQCHSTDTVKNTLDPKWNQ 54
>pdb|3PYC|A Chain A, Crystal Structure Of Human Smurf1 C2 Domain
Length = 132
Score = 45.1 bits (105), Expect = 2e-04, Method: Composition-based stats.
Identities = 36/113 (31%), Positives = 55/113 (48%), Gaps = 8/113 (7%)
Query: 1 MKLVVEVVDAYDLMPKDGEGSASPFAE--VDFLNQLSKTKTIPKNLNPVWNQKLLFDFDQ 58
+K+ + V+ A +L KD PFA+ VD Q T T+ L+P WNQ +
Sbjct: 5 IKIRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQCHSTDTVKNTLDPKWNQHYDLYVGK 64
Query: 59 TKSHNHLRIEVSIYHHER-RPIPGRHFLGRVRIPCSNLVRKGEEVYQRFPLEK 110
T S I +S+++H++ G FLG VR+ + + R + YQR L K
Sbjct: 65 TDS-----ITISVWNHKKIHKKQGAGFLGCVRLLSNAISRLKDTGYQRLDLCK 112
>pdb|1W15|A Chain A, Rat Synaptotagmin 4 C2b Domain In The Presence Of Calcium
pdb|1W16|A Chain A, Rat Synaptotagmin 4 C2b Domain In The Absence Of Calcium
Length = 153
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 48/90 (53%), Gaps = 7/90 (7%)
Query: 287 LYVRVVKAKDLPPSSITGSCDPYVEVKMGNYKGRTK----HFEKRM-NPEWNQVFAFS-- 339
L V V+KA+ LP S ++G DPYV+V + + K R H +K N +N++F F
Sbjct: 32 LTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIP 91
Query: 340 KERIQSSMLEVFLKDKEMVGRDDYLGRVAF 369
E ++ +E + D E R++ +GR+
Sbjct: 92 CESLEEISVEFLVLDSERGSRNEVIGRLVL 121
>pdb|1TJM|A Chain A, Crystallographic Identification Of Sr2+ Coordination Site
In Synaptotagmin I C2b Domain
pdb|1UOV|A Chain A, Calcium Binding Domain C2b
pdb|1UOW|A Chain A, Calcium Binding Domain C2b
pdb|1TJX|A Chain A, Crystallographic Identification Of Ca2+ Coordination Sites
In Synaptotagmin I C2b Domain
Length = 159
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 60/121 (49%), Gaps = 16/121 (13%)
Query: 287 LYVRVVKAKDLPPSSITGSCDPYVEVKM-----GNYKGRTKHFEKRMNPEWNQVFAFSK- 340
L V +++AK+L + G DPYV++ + K +T + +NP +N+ F+F
Sbjct: 27 LTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVP 86
Query: 341 -ERIQSSMLEVFLKDKEMVGRDDYLGRVAFDLNEVPTRV--------PPDSPLAPQWYRL 391
E+IQ + V + D + +G++D +G+V N + P P+A QW+ L
Sbjct: 87 FEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIA-QWHTL 145
Query: 392 E 392
+
Sbjct: 146 Q 146
>pdb|1K5W|A Chain A, Three-Dimensional Structure Of The Synaptotagmin 1 C2b-
Domain: Synaptotagmin 1 As A Phospholipid Binding
Machine
Length = 152
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 60/121 (49%), Gaps = 16/121 (13%)
Query: 287 LYVRVVKAKDLPPSSITGSCDPYVEVKM-----GNYKGRTKHFEKRMNPEWNQVFAFSK- 340
L V +++AK+L + G DPYV++ + K +T + +NP +N+ F+F
Sbjct: 20 LTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVP 79
Query: 341 -ERIQSSMLEVFLKDKEMVGRDDYLGRVAFDLNEVPTRV--------PPDSPLAPQWYRL 391
E+IQ + V + D + +G++D +G+V N + P P+A QW+ L
Sbjct: 80 FEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIA-QWHTL 138
Query: 392 E 392
+
Sbjct: 139 Q 139
>pdb|2LHA|A Chain A, Solution Structure Of C2b With Ip6
Length = 151
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 60/121 (49%), Gaps = 16/121 (13%)
Query: 287 LYVRVVKAKDLPPSSITGSCDPYVEVKM-----GNYKGRTKHFEKRMNPEWNQVFAFSK- 340
L V +++AK+L + G DPYV++ + K +T + +NP +N+ F+F
Sbjct: 19 LTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVP 78
Query: 341 -ERIQSSMLEVFLKDKEMVGRDDYLGRVAFDLNEVPTRV--------PPDSPLAPQWYRL 391
E+IQ + V + D + +G++D +G+V N + P P+A QW+ L
Sbjct: 79 FEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIA-QWHTL 137
Query: 392 E 392
+
Sbjct: 138 Q 138
>pdb|3F00|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With
Cu(Ii)
Length = 143
Score = 40.0 bits (92), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 51/107 (47%), Gaps = 7/107 (6%)
Query: 273 RFTSTYDLVEQMSYLYVRVVKAKDLPPSSITGSCDPYVEVKM---GNYKGRTKHFEKRMN 329
+++ YD Q + L V +++A +LP + G+ DPYV+V + K TK K +N
Sbjct: 24 QYSLDYDF--QNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLN 81
Query: 330 PEWNQVFAFS--KERIQSSMLEVFLKDKEMVGRDDYLGRVAFDLNEV 374
P +N+ F F + L + + D + + D +G +N V
Sbjct: 82 PVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTV 128
Score = 31.6 bits (70), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 47/97 (48%), Gaps = 6/97 (6%)
Query: 2 KLVVEVVDAYDLMPKDGEGSASPFAEVDFLNQLSK---TKTIPKNLNPVWNQKLLFDFDQ 58
+L+V ++ A +L D G++ P+ +V L K TK K LNPV+N++ F
Sbjct: 35 QLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPY 94
Query: 59 TKSHNHLRIEVSIYHHERRPIPGRHFLGRVRIPCSNL 95
++ + +++Y +R +G ++P + +
Sbjct: 95 SELGGKTLV-MAVYDFDR--FSKHDIIGEFKVPMNTV 128
>pdb|3F04|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain
pdb|3F01|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With
Cu(Ii)
pdb|3F05|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With
Mn(Ii)
Length = 143
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 51/107 (47%), Gaps = 7/107 (6%)
Query: 273 RFTSTYDLVEQMSYLYVRVVKAKDLPPSSITGSCDPYVEVKM---GNYKGRTKHFEKRMN 329
+++ YD Q + L V +++A +LP + G+ DPYV+V + K TK K +N
Sbjct: 24 QYSLDYDF--QNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLN 81
Query: 330 PEWNQVFAFS--KERIQSSMLEVFLKDKEMVGRDDYLGRVAFDLNEV 374
P +N+ F F + L + + D + + D +G +N V
Sbjct: 82 PVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTV 128
Score = 31.6 bits (70), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 47/97 (48%), Gaps = 6/97 (6%)
Query: 2 KLVVEVVDAYDLMPKDGEGSASPFAEVDFLNQLSK---TKTIPKNLNPVWNQKLLFDFDQ 58
+L+V ++ A +L D G++ P+ +V L K TK K LNPV+N++ F
Sbjct: 35 QLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPY 94
Query: 59 TKSHNHLRIEVSIYHHERRPIPGRHFLGRVRIPCSNL 95
++ + +++Y +R +G ++P + +
Sbjct: 95 SELGGKTLV-MAVYDFDR--FSKHDIIGEFKVPMNTV 128
>pdb|1RSY|A Chain A, Structure Of The First C2-domain Of Synaptotagmin I: A
Novel Ca2+(slash)phospholipid Binding Fold
Length = 152
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 51/107 (47%), Gaps = 7/107 (6%)
Query: 273 RFTSTYDLVEQMSYLYVRVVKAKDLPPSSITGSCDPYVEVKM---GNYKGRTKHFEKRMN 329
+++ YD Q + L V +++A +LP + G+ DPYV+V + K TK K +N
Sbjct: 32 QYSLDYDF--QNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLN 89
Query: 330 PEWNQVFAFS--KERIQSSMLEVFLKDKEMVGRDDYLGRVAFDLNEV 374
P +N+ F F + L + + D + + D +G +N V
Sbjct: 90 PVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTV 136
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 47/97 (48%), Gaps = 6/97 (6%)
Query: 2 KLVVEVVDAYDLMPKDGEGSASPFAEVDFLNQLSK---TKTIPKNLNPVWNQKLLFDFDQ 58
+L+V ++ A +L D G++ P+ +V L K TK K LNPV+N++ F
Sbjct: 43 QLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPY 102
Query: 59 TKSHNHLRIEVSIYHHERRPIPGRHFLGRVRIPCSNL 95
++ + +++Y +R +G ++P + +
Sbjct: 103 SELGGKTLV-MAVYDFDR--FSKHDIIGEFKVPMNTV 136
>pdb|1BYN|A Chain A, Solution Structure Of The Calcium-Bound First C2-Domain Of
Synaptotagmin I
pdb|2K8M|A Chain A, S100a13-C2a Binary Complex Structure
pdb|2K8M|D Chain D, S100a13-C2a Binary Complex Structure
pdb|2K45|A Chain A, C2a Domain Of Synaptototagmin I Solution Structure In The
Fgf-1-C2a Binary Complex: Key Component In The
Fibroblast Growthfactor Non-Classical Pathway
pdb|2K4A|A Chain A, Fgf-1-C2a Binary Complex Structure: A Key Component In The
Fibroblast Growthfactor Non-Classical Pathway
pdb|2KI6|A Chain A, The Fgf1-S100a13-C2a Hetero-Hexameric Complex Structure: A
C In The Non-Classical Pathway For Fgf1 Secretion
pdb|2KI6|F Chain F, The Fgf1-S100a13-C2a Hetero-Hexameric Complex Structure: A
C In The Non-Classical Pathway For Fgf1 Secretion
Length = 128
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 51/107 (47%), Gaps = 7/107 (6%)
Query: 273 RFTSTYDLVEQMSYLYVRVVKAKDLPPSSITGSCDPYVEVKM---GNYKGRTKHFEKRMN 329
+++ YD Q + L V +++A +LP + G+ DPYV+V + K TK K +N
Sbjct: 7 QYSLDYDF--QNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLN 64
Query: 330 PEWNQVFAFS--KERIQSSMLEVFLKDKEMVGRDDYLGRVAFDLNEV 374
P +N+ F F + L + + D + + D +G +N V
Sbjct: 65 PVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTV 111
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 47/97 (48%), Gaps = 6/97 (6%)
Query: 2 KLVVEVVDAYDLMPKDGEGSASPFAEVDFLNQLSK---TKTIPKNLNPVWNQKLLFDFDQ 58
+L+V ++ A +L D G++ P+ +V L K TK K LNPV+N++ F
Sbjct: 18 QLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPY 77
Query: 59 TKSHNHLRIEVSIYHHERRPIPGRHFLGRVRIPCSNL 95
++ + +++Y +R +G ++P + +
Sbjct: 78 SELGGKTLV-MAVYDFDR--FSKHDIIGEFKVPMNTV 111
>pdb|2DMH|A Chain A, Solution Structure Of The First C2 Domain Of Human
Myoferlin
Length = 140
Score = 37.7 bits (86), Expect = 0.029, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 4/91 (4%)
Query: 287 LYVRVVKAKDLPPSSITGSCDPYVEVKMGNYKGRTKHFEKRMNPEWNQVFAFSKERIQ-- 344
L V V A ++P + G DP V V + K +TK + +NP WN++ F I
Sbjct: 9 LRVIVESASNIPKTKF-GKPDPIVSVIFKDEKKKTKKVDNELNPVWNEILEFDLRGIPLD 67
Query: 345 -SSMLEVFLKDKEMVGRDDYLGRVAFDLNEV 374
SS L + +KD E +G++ +G L ++
Sbjct: 68 FSSSLGIIVKDFETIGQNKLIGTATVALKDL 98
Score = 34.3 bits (77), Expect = 0.33, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 27/50 (54%)
Query: 7 VVDAYDLMPKDGEGSASPFAEVDFLNQLSKTKTIPKNLNPVWNQKLLFDF 56
+V++ +PK G P V F ++ KTK + LNPVWN+ L FD
Sbjct: 12 IVESASNIPKTKFGKPDPIVSVIFKDEKKKTKKVDNELNPVWNEILEFDL 61
>pdb|1WFJ|A Chain A, C2 Domain-Containing Protein From Putative Elicitor-
Responsive Gene
Length = 136
Score = 36.2 bits (82), Expect = 0.11, Method: Composition-based stats.
Identities = 27/99 (27%), Positives = 45/99 (45%), Gaps = 4/99 (4%)
Query: 287 LYVRVVKAKDLPPSSITGSCDPYVEVKMGNYKGRTKHFEKR-MNPEWNQVFAFSKERIQS 345
L V +V AK L + + DPYV++ ++ E PEWN+ F F+ +
Sbjct: 12 LEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSE-GT 70
Query: 346 SMLEVFLKDKEMVGRDDYLGRVAFDLNE--VPTRVPPDS 382
+ L+ + DK++ DD +G L V +PP +
Sbjct: 71 TELKAKIFDKDVGTEDDAVGEATIPLEPVFVEGSIPPTA 109
Score = 32.3 bits (72), Expect = 1.4, Method: Composition-based stats.
Identities = 21/86 (24%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Query: 450 LRVNVIEAQDIVPNDRNRLPEGFVKVQVGNQVLKTKICPTPTTNPLWNEDLVFVAAEPFE 509
L V ++ A+ + D + +V++ Q K+ + T P WNE +F +E
Sbjct: 12 LEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEGTT 71
Query: 510 EQLFLTVEDRVHASKDEVLGKISLPL 535
E L + D+ ++D+ +G+ ++PL
Sbjct: 72 E-LKAKIFDKDVGTEDDAVGEATIPL 96
>pdb|1F60|A Chain A, Crystal Structure Of The Yeast Elongation Factor Complex
Eef1a:eef1ba
pdb|1G7C|A Chain A, Yeast Eef1a:eef1ba In Complex With Gdpnp
pdb|1IJE|A Chain A, Nucleotide Exchange Intermediates In The Eef1a-eef1ba
Complex
pdb|1IJF|A Chain A, Nucleotide Exchange Mechanisms In The Eef1a-Eef1ba Complex
pdb|2B7B|A Chain A, Yeast Guanine Nucleotide Exchange Factor Eef1balpha K205a
Mutant In Complex With Eef1a And Gdp
pdb|2B7C|A Chain A, Yeast Guanine Nucleotide Exchange Factor Eef1balpha K205a
Mutant In Complex With Eef1a
Length = 458
Score = 35.0 bits (79), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 9/92 (9%)
Query: 164 VEELAAVDAPKSLPEEEISRISLKEDIKEPAKVTVEPIQEFLKQQVVLQPGQSVEKQPQG 223
+E + A++ P S P ++ R+ L +D+ + + P+ + V++PG V P G
Sbjct: 227 LEAIDAIEQP-SRPTDKPLRLPL-QDVYKIGGIGTVPVGRV--ETGVIKPGMVVTFAPAG 282
Query: 224 V-----PFTMHSMNLQQGRPGDQEEYNLKDTN 250
V MH L+QG PGD +N+K+ +
Sbjct: 283 VTTEVKSVEMHHEQLEQGVPGDNVGFNVKNVS 314
>pdb|2ENP|A Chain A, Solution Structure Of The First C2 Domain From Human BK
Protein
Length = 147
Score = 34.7 bits (78), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 56/113 (49%), Gaps = 14/113 (12%)
Query: 274 FTSTYDLVEQMSYLYVRVVKAKDLPPS-SITGS------CDPYVEVKMGNYKGRTKHF-- 324
F++ YDL+ ++L VRV++A+DLPP S GS +PYV++ + + +K
Sbjct: 17 FSTQYDLLH--NHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGV 74
Query: 325 -EKRMNPEWNQVFAFSKERIQSSMLEVFLK--DKEMVGRDDYLGRVAFDLNEV 374
K P + + + F +++ + L D + R +G+V+ L EV
Sbjct: 75 KRKTQKPVFEERYTFEIPFLEAQRRTLLLTVVDFDKFSRHCVIGKVSVPLCEV 127
>pdb|2CM6|A Chain A, Crystal Structure Of The C2b Domain Of Rabphilin3a
pdb|2CM6|B Chain B, Crystal Structure Of The C2b Domain Of Rabphilin3a
Length = 166
Score = 32.3 bits (72), Expect = 1.4, Method: Composition-based stats.
Identities = 23/90 (25%), Positives = 45/90 (50%), Gaps = 7/90 (7%)
Query: 283 QMSYLYVRVVKAKDLPPSSITGSCDPYVEV----KMGN-YKGRTKHFEKRMNPEWNQVFA 337
Q L V +++ L G DP+V++ MG K +T+ +K +NPE+N+ F
Sbjct: 35 QQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFF 94
Query: 338 FSKER--IQSSMLEVFLKDKEMVGRDDYLG 365
+ + + L++ + D ++ +DY+G
Sbjct: 95 YDIKHSDLAKKSLDISVWDYDIGKSNDYIG 124
>pdb|3RPB|A Chain A, The C2b-Domain Of Rabphilin: Structural Variations In A
Janus-Faced Domain
Length = 140
Score = 32.3 bits (72), Expect = 1.5, Method: Composition-based stats.
Identities = 23/90 (25%), Positives = 45/90 (50%), Gaps = 7/90 (7%)
Query: 283 QMSYLYVRVVKAKDLPPSSITGSCDPYVEV----KMGN-YKGRTKHFEKRMNPEWNQVFA 337
Q L V +++ L G DP+V++ MG K +T+ +K +NPE+N+ F
Sbjct: 13 QQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFF 72
Query: 338 FSKER--IQSSMLEVFLKDKEMVGRDDYLG 365
+ + + L++ + D ++ +DY+G
Sbjct: 73 YDIKHSDLAKKSLDISVWDYDIGKSNDYIG 102
>pdb|2CM5|A Chain A, Crystal Structure Of The C2b Domain Of Rabphilin
Length = 166
Score = 31.6 bits (70), Expect = 2.3, Method: Composition-based stats.
Identities = 21/90 (23%), Positives = 44/90 (48%), Gaps = 7/90 (7%)
Query: 283 QMSYLYVRVVKAKDLPPSSITGSCDPYVEVKMG-----NYKGRTKHFEKRMNPEWNQVFA 337
Q L V +++ L G DP+V++ + K +T+ +K +NPE+N+ F
Sbjct: 35 QQGGLIVGIIRCVHLAAXDANGYSDPFVKLWLKPDXGKKAKHKTQIKKKTLNPEFNEEFF 94
Query: 338 FSKER--IQSSMLEVFLKDKEMVGRDDYLG 365
+ + + L++ + D ++ +DY+G
Sbjct: 95 YDIKHSDLAKKSLDISVWDYDIGKSNDYIG 124
>pdb|2Q3X|A Chain A, The Rim1alpha C2b Domain
pdb|2Q3X|B Chain B, The Rim1alpha C2b Domain
Length = 171
Score = 31.6 bits (70), Expect = 2.6, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 6/60 (10%)
Query: 2 KLVVEVVDAYDLMPKDGEGSA-SPFAEVDFLNQLS-----KTKTIPKNLNPVWNQKLLFD 55
+L VEV+ A L K G S +P+ +V L + KT+ K L+P++ Q L+FD
Sbjct: 31 QLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVFD 90
>pdb|1DJG|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Lanthanum
pdb|1DJG|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Lanthanum
pdb|1DJH|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Barium
pdb|1DJH|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Barium
pdb|1DJI|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Calcium
pdb|1DJI|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Calcium
pdb|1DJW|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-2-Methylene-1,2-Cyclic-
Monophosphonate
pdb|1DJW|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-2-Methylene-1,2-Cyclic-
Monophosphonate
pdb|1DJX|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-1,4,5-Trisphosphate
pdb|1DJX|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-1,4,5-Trisphosphate
pdb|1DJY|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-2,4,5-Trisphosphate
pdb|1DJY|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-2,4,5-Trisphosphate
pdb|1DJZ|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-4,5-Bisphosphate
pdb|1DJZ|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-4,5-Bisphosphate
pdb|2ISD|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
pdb|2ISD|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Length = 624
Score = 31.2 bits (69), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 50/114 (43%), Gaps = 17/114 (14%)
Query: 450 LRVNVIEAQDI--VPNDRNRL--PEGFVKVQ-VGNQV--LKTKICPTPTTNPLWNEDLVF 502
LRV +I Q + V ++N + P+ V++ VG +T + NP W+ + F
Sbjct: 499 LRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEF 558
Query: 503 VAAEPFEEQLFLTVEDRVHASKDEVLGKISLP----------LHIFEKRLDHRP 546
P + VED +SK++ +G+ ++P +H+ K D P
Sbjct: 559 EVTVPDLALVRFMVEDYDSSSKNDFIGQSTIPWNSLKQGYRHVHLLSKNGDQHP 612
>pdb|1QAS|A Chain A, 1-Phosphatidylinositol-4,5-Bisphosphate Phosphodiesterase
Delta 1
pdb|1QAS|B Chain B, 1-Phosphatidylinositol-4,5-Bisphosphate Phosphodiesterase
Delta 1
pdb|1QAT|A Chain A, 1-Phosphatidylinositol-4,5-Bisphosphate Phosphodiesterase
Delta Complex With Samarium (Iii) Chloride
pdb|1QAT|B Chain B, 1-Phosphatidylinositol-4,5-Bisphosphate Phosphodiesterase
Delta Complex With Samarium (Iii) Chloride
Length = 622
Score = 31.2 bits (69), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 50/114 (43%), Gaps = 17/114 (14%)
Query: 450 LRVNVIEAQDI--VPNDRNRL--PEGFVKVQ-VGNQV--LKTKICPTPTTNPLWNEDLVF 502
LRV +I Q + V ++N + P+ V++ VG +T + NP W+ + F
Sbjct: 497 LRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEF 556
Query: 503 VAAEPFEEQLFLTVEDRVHASKDEVLGKISLP----------LHIFEKRLDHRP 546
P + VED +SK++ +G+ ++P +H+ K D P
Sbjct: 557 EVTVPDLALVRFMVEDYDSSSKNDFIGQSTIPWNSLKQGYRHVHLLSKNGDQHP 610
>pdb|3FBK|A Chain A, Crystal Structure Of The C2 Domain Of The Human Regulator
Of G-Protein Signaling 3 Isoform 6 (Rgp3), Northeast
Structural Genomics Consortium Target Hr5550a
pdb|3FBK|B Chain B, Crystal Structure Of The C2 Domain Of The Human Regulator
Of G-Protein Signaling 3 Isoform 6 (Rgp3), Northeast
Structural Genomics Consortium Target Hr5550a
Length = 153
Score = 30.0 bits (66), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 28/124 (22%), Positives = 54/124 (43%), Gaps = 11/124 (8%)
Query: 283 QMSYLYVRVVKAKDLPPSSITGSCDPYVEVKMGNYKGRTKHFEKRM-----NPEWNQVFA 337
Q L + +++ K L S G+CDPYV++ + R +H + + +P +++ F
Sbjct: 25 QDRVLLLHIIEGKGLI-SKQPGTCDPYVKISLIPEDSRLRHQKTQTVPDCRDPAFHEHFF 83
Query: 338 F--SKERIQSSMLEVFLKDKEMVGRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLEDRR 395
F +E Q +L + +G +F + + T PD ++ +Y L +
Sbjct: 84 FPVQEEDDQKRLLVTVWNRASQSRQSGLIGCXSFGVKSLLT---PDKEISGWYYLLGEHL 140
Query: 396 GEGK 399
G K
Sbjct: 141 GRTK 144
>pdb|3D3I|A Chain A, Crystal Structural Of Escherichia Coli K12 Ygjk, A
Glucosidase Belonging To Glycoside Hydrolase Family 63
pdb|3D3I|B Chain B, Crystal Structural Of Escherichia Coli K12 Ygjk, A
Glucosidase Belonging To Glycoside Hydrolase Family 63
Length = 761
Score = 29.6 bits (65), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 22/43 (51%)
Query: 211 LQPGQSVEKQPQGVPFTMHSMNLQQGRPGDQEEYNLKDTNPQL 253
+QPG SV Q G + + NL R GD +N ++T P L
Sbjct: 353 IQPGDSVRPQDVGFVPDLIAWNLSPERGGDGGNWNERNTKPSL 395
>pdb|3C67|A Chain A, Escherichia Coli K12 Ygjk In A Complexed With Glucose
pdb|3C67|B Chain B, Escherichia Coli K12 Ygjk In A Complexed With Glucose
pdb|3C68|A Chain A, Escherichia Coli K12 Ygjk In A Complexed With Mannose
pdb|3C68|B Chain B, Escherichia Coli K12 Ygjk In A Complexed With Mannose
pdb|3C69|A Chain A, Escherichia Coli K12 Ygjk In A Complexed With Galactose
pdb|3C69|B Chain B, Escherichia Coli K12 Ygjk In A Complexed With Galactose
Length = 761
Score = 29.6 bits (65), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 22/43 (51%)
Query: 211 LQPGQSVEKQPQGVPFTMHSMNLQQGRPGDQEEYNLKDTNPQL 253
+QPG SV Q G + + NL R GD +N ++T P L
Sbjct: 353 IQPGDSVRPQDVGFVPDLIAWNLSPERGGDGGNWNERNTKPSL 395
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,958,750
Number of Sequences: 62578
Number of extensions: 1309998
Number of successful extensions: 2500
Number of sequences better than 100.0: 49
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 2313
Number of HSP's gapped (non-prelim): 157
length of query: 1026
length of database: 14,973,337
effective HSP length: 109
effective length of query: 917
effective length of database: 8,152,335
effective search space: 7475691195
effective search space used: 7475691195
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)