Query 001696
Match_columns 1026
No_of_seqs 590 out of 4325
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 07:08:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001696.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001696hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF08372 PRT_C: Plant phosphor 100.0 8.3E-43 1.8E-47 329.0 14.9 156 871-1026 1-156 (156)
2 COG5038 Ca2+-dependent lipid-b 100.0 3.2E-35 6.9E-40 343.6 43.5 553 2-748 437-1162(1227)
3 KOG1028 Ca2+-dependent phospho 100.0 5.7E-27 1.2E-31 265.4 25.4 227 270-537 153-393 (421)
4 COG5038 Ca2+-dependent lipid-b 100.0 6.7E-26 1.5E-30 265.9 34.8 396 282-750 433-843 (1227)
5 KOG1326 Membrane-associated pr 99.9 4.5E-27 9.7E-32 270.0 18.2 614 3-778 208-1038(1105)
6 KOG1028 Ca2+-dependent phospho 99.9 3.7E-25 7.9E-30 250.7 24.2 213 449-713 168-393 (421)
7 KOG2059 Ras GTPase-activating 99.9 1.9E-22 4.1E-27 224.7 15.9 245 2-411 6-276 (800)
8 KOG2059 Ras GTPase-activating 99.9 1.7E-21 3.8E-26 217.1 16.3 252 285-584 5-277 (800)
9 cd04019 C2C_MCTP_PRT_plant C2 99.9 3.4E-21 7.3E-26 188.0 16.3 149 450-601 2-150 (150)
10 cd08379 C2D_MCTP_PRT_plant C2 99.9 4.8E-21 1E-25 179.9 15.1 122 613-742 1-125 (126)
11 cd04016 C2_Tollip C2 domain pr 99.9 7.8E-21 1.7E-25 177.3 15.2 118 612-746 2-121 (121)
12 cd04022 C2A_MCTP_PRT_plant C2 99.8 8E-21 1.7E-25 181.7 12.1 127 2-129 1-127 (127)
13 cd04016 C2_Tollip C2 domain pr 99.8 2.1E-19 4.6E-24 167.7 15.7 118 285-410 2-121 (121)
14 cd08682 C2_Rab11-FIP_classI C2 99.8 1.4E-19 3E-24 172.9 13.9 117 614-744 1-125 (126)
15 cd04042 C2A_MCTP_PRT C2 domain 99.8 5.7E-19 1.2E-23 167.4 15.6 119 614-748 2-121 (121)
16 cd04019 C2C_MCTP_PRT_plant C2 99.8 3.9E-19 8.5E-24 173.4 14.2 137 613-763 1-149 (150)
17 KOG1030 Predicted Ca2+-depende 99.8 1.7E-19 3.7E-24 170.3 10.7 117 610-744 4-120 (168)
18 cd04015 C2_plant_PLD C2 domain 99.8 7.6E-19 1.7E-23 173.4 15.8 124 612-747 7-158 (158)
19 cd08378 C2B_MCTP_PRT_plant C2 99.8 9.9E-19 2.1E-23 164.9 14.4 121 286-412 1-121 (121)
20 cd08379 C2D_MCTP_PRT_plant C2 99.8 5.7E-19 1.2E-23 165.9 11.8 117 2-123 1-125 (126)
21 cd08682 C2_Rab11-FIP_classI C2 99.8 1.7E-18 3.7E-23 165.4 14.8 119 287-408 1-125 (126)
22 cd04022 C2A_MCTP_PRT_plant C2 99.8 3E-18 6.4E-23 163.9 15.1 121 287-411 2-126 (127)
23 cd08401 C2A_RasA2_RasA3 C2 dom 99.8 3.7E-18 7.9E-23 161.0 15.2 119 614-746 2-121 (121)
24 cd08677 C2A_Synaptotagmin-13 C 99.8 1.9E-18 4E-23 158.1 12.2 109 273-391 4-118 (118)
25 cd08401 C2A_RasA2_RasA3 C2 dom 99.8 2.1E-18 4.4E-23 162.7 12.1 117 3-126 2-120 (121)
26 cd08381 C2B_PI3K_class_II C2 d 99.8 3.7E-18 8E-23 161.2 13.2 109 273-391 5-121 (122)
27 cd08378 C2B_MCTP_PRT_plant C2 99.8 2.4E-18 5.3E-23 162.2 11.8 115 3-128 2-120 (121)
28 cd08681 C2_fungal_Inn1p-like C 99.8 3.1E-18 6.7E-23 161.8 12.3 116 612-746 1-118 (118)
29 cd08375 C2_Intersectin C2 doma 99.8 1E-17 2.2E-22 161.1 15.8 119 608-746 11-135 (136)
30 cd08395 C2C_Munc13 C2 domain t 99.8 2.7E-18 5.9E-23 159.8 11.4 107 2-112 1-114 (120)
31 cd08376 C2B_MCTP_PRT C2 domain 99.8 9.3E-18 2E-22 158.0 15.1 113 614-747 2-115 (116)
32 cd08400 C2_Ras_p21A1 C2 domain 99.8 1.5E-17 3.3E-22 158.3 16.1 119 612-748 4-124 (126)
33 cd08377 C2C_MCTP_PRT C2 domain 99.8 1.5E-17 3.2E-22 157.5 15.2 118 612-746 1-118 (119)
34 cd08678 C2_C21orf25-like C2 do 99.8 7E-18 1.5E-22 161.0 12.8 121 3-132 1-124 (126)
35 cd04042 C2A_MCTP_PRT C2 domain 99.8 2E-17 4.4E-22 156.8 15.6 120 286-412 1-121 (121)
36 cd04010 C2B_RasA3 C2 domain se 99.7 5.4E-18 1.2E-22 164.3 11.4 107 2-112 1-124 (148)
37 KOG1326 Membrane-associated pr 99.7 3.4E-18 7.4E-23 197.6 11.6 411 273-713 195-703 (1105)
38 cd08381 C2B_PI3K_class_II C2 d 99.7 1.2E-17 2.7E-22 157.7 13.5 100 612-726 13-121 (122)
39 cd08678 C2_C21orf25-like C2 do 99.7 2.2E-17 4.7E-22 157.6 15.1 119 614-748 1-121 (126)
40 cd04028 C2B_RIM1alpha C2 domai 99.7 1.6E-17 3.4E-22 159.8 14.2 116 270-395 17-140 (146)
41 cd08392 C2A_SLP-3 C2 domain fi 99.7 1.7E-17 3.7E-22 157.6 13.6 118 271-392 2-128 (128)
42 cd08393 C2A_SLP-1_2 C2 domain 99.7 1.4E-17 3E-22 158.3 13.0 115 271-392 2-125 (125)
43 cd04054 C2A_Rasal1_RasA4 C2 do 99.7 1.1E-17 2.3E-22 158.3 12.0 118 3-126 2-120 (121)
44 cd04024 C2A_Synaptotagmin-like 99.7 2.1E-17 4.5E-22 158.7 14.2 121 612-746 1-128 (128)
45 KOG1030 Predicted Ca2+-depende 99.7 8.5E-18 1.8E-22 158.9 10.9 96 283-379 4-99 (168)
46 cd08375 C2_Intersectin C2 doma 99.7 3.4E-17 7.3E-22 157.5 15.1 123 283-410 13-135 (136)
47 cd04027 C2B_Munc13 C2 domain s 99.7 1.1E-17 2.4E-22 159.7 11.7 117 2-125 2-127 (127)
48 cd08376 C2B_MCTP_PRT C2 domain 99.7 4.9E-17 1.1E-21 153.1 15.7 114 286-410 1-114 (116)
49 cd08681 C2_fungal_Inn1p-like C 99.7 2.3E-17 5.1E-22 155.8 13.3 117 285-410 1-118 (118)
50 cd04029 C2A_SLP-4_5 C2 domain 99.7 3.2E-17 6.9E-22 155.6 14.2 115 271-392 2-125 (125)
51 cd04028 C2B_RIM1alpha C2 domai 99.7 5E-17 1.1E-21 156.4 14.6 104 612-728 29-138 (146)
52 cd08677 C2A_Synaptotagmin-13 C 99.7 4E-17 8.7E-22 149.4 13.2 101 609-726 11-118 (118)
53 cd04029 C2A_SLP-4_5 C2 domain 99.7 4.8E-17 1.1E-21 154.3 14.2 104 611-727 14-125 (125)
54 cd08393 C2A_SLP-1_2 C2 domain 99.7 3.3E-17 7.2E-22 155.7 12.7 101 612-726 15-124 (125)
55 cd04050 C2B_Synaptotagmin-like 99.7 2.4E-17 5.1E-22 151.8 11.0 103 2-112 1-104 (105)
56 cd04033 C2_NEDD4_NEDD4L C2 dom 99.7 6.5E-17 1.4E-21 156.3 14.6 118 614-746 2-132 (133)
57 cd04025 C2B_RasA1_RasA4 C2 dom 99.7 5.1E-17 1.1E-21 154.6 13.5 119 613-745 1-123 (123)
58 PF04842 DUF639: Plant protein 99.7 4.1E-17 8.8E-22 185.3 15.0 183 818-1020 483-673 (683)
59 cd08382 C2_Smurf-like C2 domai 99.7 2.7E-17 5.9E-22 156.0 11.5 119 2-125 1-122 (123)
60 cd04036 C2_cPLA2 C2 domain pre 99.7 3.6E-17 7.8E-22 154.6 12.2 114 3-128 2-118 (119)
61 cd04033 C2_NEDD4_NEDD4L C2 dom 99.7 1.1E-16 2.4E-21 154.7 15.9 123 287-410 2-132 (133)
62 cd04054 C2A_Rasal1_RasA4 C2 do 99.7 1E-16 2.2E-21 151.6 14.9 117 614-745 2-120 (121)
63 cd04046 C2_Calpain C2 domain p 99.7 6.5E-17 1.4E-21 154.1 13.6 119 2-130 4-124 (126)
64 cd04046 C2_Calpain C2 domain p 99.7 2E-16 4.2E-21 150.8 16.5 121 611-748 2-123 (126)
65 cd08377 C2C_MCTP_PRT C2 domain 99.7 1.7E-16 3.7E-21 150.2 15.8 118 285-410 1-118 (119)
66 cd08391 C2A_C2C_Synaptotagmin_ 99.7 8.6E-17 1.9E-21 152.8 13.5 117 612-746 1-121 (121)
67 cd08395 C2C_Munc13 C2 domain t 99.7 6.8E-17 1.5E-21 150.4 12.3 103 287-395 2-114 (120)
68 cd04025 C2B_RasA1_RasA4 C2 dom 99.7 1.6E-16 3.5E-21 151.1 15.0 118 286-408 1-122 (123)
69 cd08400 C2_Ras_p21A1 C2 domain 99.7 3E-16 6.4E-21 149.4 16.4 120 284-412 3-124 (126)
70 cd04024 C2A_Synaptotagmin-like 99.7 1.7E-16 3.8E-21 152.3 14.8 123 285-409 1-127 (128)
71 cd08387 C2A_Synaptotagmin-8 C2 99.7 1.3E-16 2.9E-21 152.0 13.8 115 271-392 3-123 (124)
72 cd04044 C2A_Tricalbin-like C2 99.7 1.3E-16 2.9E-21 152.2 13.6 121 611-748 1-124 (124)
73 cd08387 C2A_Synaptotagmin-8 C2 99.7 1.6E-16 3.4E-21 151.5 13.8 103 611-727 15-123 (124)
74 cd08680 C2_Kibra C2 domain fou 99.7 1E-16 2.2E-21 150.7 12.3 113 273-391 4-124 (124)
75 cd08691 C2_NEDL1-like C2 domai 99.7 9.9E-17 2.2E-21 153.3 11.9 118 2-125 2-136 (137)
76 cd08392 C2A_SLP-3 C2 domain fi 99.7 2.3E-16 5E-21 149.9 14.2 105 449-555 16-128 (128)
77 cd08685 C2_RGS-like C2 domain 99.7 1.4E-16 3E-21 149.6 12.2 101 612-726 12-119 (119)
78 cd04030 C2C_KIAA1228 C2 domain 99.7 2.4E-16 5.2E-21 151.0 14.1 115 271-392 3-127 (127)
79 cd08385 C2A_Synaptotagmin-1-5- 99.7 3E-16 6.5E-21 149.6 14.6 113 273-392 6-123 (124)
80 cd08388 C2A_Synaptotagmin-4-11 99.7 2.8E-16 6.1E-21 149.8 13.7 117 271-392 3-127 (128)
81 cd04031 C2A_RIM1alpha C2 domai 99.7 2.9E-16 6.4E-21 150.0 13.5 114 271-392 3-125 (125)
82 cd04036 C2_cPLA2 C2 domain pre 99.7 3.7E-16 8E-21 147.6 14.0 113 287-410 2-117 (119)
83 cd04011 C2B_Ferlin C2 domain s 99.7 2.4E-16 5.1E-21 146.9 12.5 107 445-557 1-111 (111)
84 cd08394 C2A_Munc13 C2 domain f 99.7 3.9E-16 8.4E-21 144.2 13.5 102 284-394 1-102 (127)
85 cd08391 C2A_C2C_Synaptotagmin_ 99.7 5.1E-16 1.1E-20 147.5 14.7 114 285-409 1-120 (121)
86 cd08680 C2_Kibra C2 domain fou 99.7 1.5E-16 3.2E-21 149.6 10.0 104 2-108 15-124 (124)
87 cd04010 C2B_RasA3 C2 domain se 99.7 3.5E-16 7.5E-21 151.7 12.8 103 287-396 2-125 (148)
88 cd08385 C2A_Synaptotagmin-1-5- 99.7 5.9E-16 1.3E-20 147.5 14.3 102 612-727 16-123 (124)
89 cd04013 C2_SynGAP_like C2 doma 99.7 9.7E-16 2.1E-20 146.8 15.6 124 612-750 11-142 (146)
90 cd04050 C2B_Synaptotagmin-like 99.7 3.2E-16 7E-21 144.3 11.9 103 450-558 2-104 (105)
91 cd08389 C2A_Synaptotagmin-14_1 99.7 3.8E-16 8.3E-21 148.1 12.7 114 271-392 3-123 (124)
92 cd08386 C2A_Synaptotagmin-7 C2 99.7 5.7E-16 1.2E-20 147.9 13.9 115 271-392 3-124 (125)
93 cd04015 C2_plant_PLD C2 domain 99.7 1.4E-15 3.1E-20 150.2 16.9 121 284-411 6-158 (158)
94 cd04027 C2B_Munc13 C2 domain s 99.7 9.2E-16 2E-20 146.4 14.9 115 286-408 2-127 (127)
95 cd04017 C2D_Ferlin C2 domain f 99.7 1.3E-15 2.8E-20 147.1 16.0 122 286-412 2-133 (135)
96 cd08685 C2_RGS-like C2 domain 99.7 3.6E-16 7.8E-21 146.7 11.7 109 273-391 4-119 (119)
97 cd04030 C2C_KIAA1228 C2 domain 99.7 7E-16 1.5E-20 147.8 13.8 104 612-727 16-127 (127)
98 cd08389 C2A_Synaptotagmin-14_1 99.7 3E-16 6.5E-21 148.8 10.9 106 1-110 16-124 (124)
99 cd08388 C2A_Synaptotagmin-4-11 99.7 3.2E-16 7E-21 149.4 11.0 107 2-110 17-128 (128)
100 cd04014 C2_PKC_epsilon C2 doma 99.7 1.3E-15 2.8E-20 146.7 15.4 118 611-748 3-130 (132)
101 cd08394 C2A_Munc13 C2 domain f 99.7 6.4E-16 1.4E-20 142.7 12.5 99 612-729 2-102 (127)
102 cd08521 C2A_SLP C2 domain firs 99.7 6.3E-16 1.4E-20 147.3 12.8 112 273-391 4-123 (123)
103 cd04031 C2A_RIM1alpha C2 domai 99.7 7.9E-16 1.7E-20 147.0 13.5 100 612-726 16-124 (125)
104 cd08688 C2_KIAA0528-like C2 do 99.7 3.9E-16 8.4E-21 145.0 11.1 100 614-727 1-108 (110)
105 cd04039 C2_PSD C2 domain prese 99.7 6.2E-16 1.3E-20 142.3 12.2 96 612-718 1-99 (108)
106 cd08407 C2B_Synaptotagmin-13 C 99.7 6.5E-16 1.4E-20 147.7 12.7 101 271-373 2-112 (138)
107 cd04017 C2D_Ferlin C2 domain f 99.7 1.7E-15 3.8E-20 146.2 15.4 122 448-583 1-132 (135)
108 cd08373 C2A_Ferlin C2 domain f 99.7 1.6E-15 3.5E-20 145.1 14.9 114 618-749 2-118 (127)
109 cd04011 C2B_Ferlin C2 domain s 99.7 1E-15 2.2E-20 142.6 13.0 105 283-393 2-110 (111)
110 cd08386 C2A_Synaptotagmin-7 C2 99.7 1.6E-15 3.5E-20 144.8 14.4 102 612-727 16-124 (125)
111 cd04039 C2_PSD C2 domain prese 99.6 1.4E-15 2.9E-20 140.0 12.7 97 285-381 1-102 (108)
112 cd08382 C2_Smurf-like C2 domai 99.6 2.3E-15 5E-20 142.8 14.5 116 287-408 2-122 (123)
113 cd08521 C2A_SLP C2 domain firs 99.6 1.5E-15 3.2E-20 144.7 13.3 102 611-726 13-123 (123)
114 cd08390 C2A_Synaptotagmin-15-1 99.6 2.3E-15 4.9E-20 143.4 14.3 114 273-393 4-123 (123)
115 cd04020 C2B_SLP_1-2-3-4 C2 dom 99.6 1.3E-15 2.8E-20 150.9 12.8 116 273-393 5-138 (162)
116 cd04041 C2A_fungal C2 domain f 99.6 8.3E-16 1.8E-20 143.0 10.5 99 612-727 1-107 (111)
117 KOG0696 Serine/threonine prote 99.6 9.6E-17 2.1E-21 169.5 4.5 104 2-111 181-289 (683)
118 cd08688 C2_KIAA0528-like C2 do 99.6 1.6E-15 3.4E-20 140.9 11.9 105 450-556 1-109 (110)
119 cd08675 C2B_RasGAP C2 domain s 99.6 1.2E-15 2.6E-20 147.1 11.3 106 3-112 1-122 (137)
120 cd04018 C2C_Ferlin C2 domain t 99.6 1.7E-15 3.8E-20 147.0 12.4 104 613-727 1-124 (151)
121 cd08373 C2A_Ferlin C2 domain f 99.6 4.9E-15 1.1E-19 141.8 14.8 116 291-414 2-119 (127)
122 cd04041 C2A_fungal C2 domain f 99.6 1.5E-15 3.3E-20 141.3 10.9 101 285-393 1-108 (111)
123 cd04044 C2A_Tricalbin-like C2 99.6 4.6E-15 1E-19 141.6 14.5 120 285-412 2-124 (124)
124 cd08690 C2_Freud-1 C2 domain f 99.6 6.1E-15 1.3E-19 142.9 15.0 116 614-746 4-136 (155)
125 cd04051 C2_SRC2_like C2 domain 99.6 1.9E-15 4.2E-20 144.2 11.4 118 287-406 2-125 (125)
126 cd08406 C2B_Synaptotagmin-12 C 99.6 1.9E-15 4.2E-20 144.7 11.4 101 271-373 2-110 (136)
127 cd04014 C2_PKC_epsilon C2 doma 99.6 1.1E-14 2.4E-19 140.3 16.2 116 285-412 4-130 (132)
128 cd04020 C2B_SLP_1-2-3-4 C2 dom 99.6 6.4E-15 1.4E-19 146.0 14.7 131 401-557 1-139 (162)
129 cd04038 C2_ArfGAP C2 domain pr 99.6 5.9E-15 1.3E-19 142.7 14.1 92 611-717 1-92 (145)
130 cd08390 C2A_Synaptotagmin-15-1 99.6 7.2E-15 1.6E-19 139.9 14.4 103 611-727 13-122 (123)
131 cd04018 C2C_Ferlin C2 domain t 99.6 4.2E-15 9.1E-20 144.3 12.7 108 450-558 2-127 (151)
132 cd04032 C2_Perforin C2 domain 99.6 4.8E-15 1E-19 139.6 12.3 95 608-717 24-120 (127)
133 cd04043 C2_Munc13_fungal C2 do 99.6 1.3E-14 2.9E-19 138.7 15.2 118 449-584 2-122 (126)
134 cd04043 C2_Munc13_fungal C2 do 99.6 1.4E-14 3E-19 138.6 15.2 118 286-412 2-122 (126)
135 PLN03008 Phospholipase D delta 99.6 5.2E-15 1.1E-19 173.2 14.7 126 612-749 14-179 (868)
136 cd08406 C2B_Synaptotagmin-12 C 99.6 7.1E-15 1.5E-19 140.9 12.8 88 449-537 16-110 (136)
137 cd04051 C2_SRC2_like C2 domain 99.6 4.8E-15 1E-19 141.5 11.4 113 613-742 1-125 (125)
138 cd04049 C2_putative_Elicitor-r 99.6 6.9E-15 1.5E-19 140.1 12.4 102 612-727 1-107 (124)
139 cd08407 C2B_Synaptotagmin-13 C 99.6 1.1E-14 2.3E-19 139.3 13.3 89 448-537 15-112 (138)
140 cd04013 C2_SynGAP_like C2 doma 99.6 8E-15 1.7E-19 140.5 11.7 120 2-131 12-142 (146)
141 cd08692 C2B_Tac2-N C2 domain s 99.6 1.2E-14 2.6E-19 136.5 12.5 100 273-374 4-110 (135)
142 cd04045 C2C_Tricalbin-like C2 99.6 1E-14 2.2E-19 137.3 12.0 102 612-728 1-103 (120)
143 cd08384 C2B_Rabphilin_Doc2 C2 99.6 5.2E-15 1.1E-19 142.9 9.9 114 273-395 3-123 (133)
144 cd08690 C2_Freud-1 C2 domain f 99.6 1.8E-14 3.9E-19 139.6 13.5 123 3-129 4-138 (155)
145 cd08691 C2_NEDL1-like C2 domai 99.6 3.6E-14 7.7E-19 135.7 15.4 118 286-408 2-136 (137)
146 KOG1013 Synaptic vesicle prote 99.6 6.7E-16 1.5E-20 159.1 3.6 226 273-537 83-328 (362)
147 cd04040 C2D_Tricalbin-like C2 99.6 1.9E-14 4.2E-19 135.2 13.2 111 614-741 1-113 (115)
148 cd08383 C2A_RasGAP C2 domain ( 99.6 2.5E-14 5.4E-19 134.9 13.6 112 614-746 2-117 (117)
149 cd08408 C2B_Synaptotagmin-14_1 99.6 1.5E-14 3.2E-19 139.4 11.9 114 273-394 5-126 (138)
150 cd04009 C2B_Munc13-like C2 dom 99.6 2E-14 4.4E-19 138.4 12.8 104 273-378 6-120 (133)
151 cd08405 C2B_Synaptotagmin-7 C2 99.6 2.2E-14 4.8E-19 138.9 13.1 102 271-374 2-111 (136)
152 cd08410 C2B_Synaptotagmin-17 C 99.6 6E-15 1.3E-19 142.3 8.9 115 273-395 4-125 (135)
153 cd08404 C2B_Synaptotagmin-4 C2 99.6 5.5E-15 1.2E-19 143.1 8.7 114 273-395 5-125 (136)
154 cd08402 C2B_Synaptotagmin-1 C2 99.6 2.3E-14 5E-19 138.8 13.0 115 271-394 2-124 (136)
155 cd08383 C2A_RasGAP C2 domain ( 99.6 1.9E-14 4.1E-19 135.8 12.1 115 3-127 2-117 (117)
156 cd04026 C2_PKC_alpha_gamma C2 99.6 2.4E-14 5.2E-19 137.8 12.9 102 612-728 13-121 (131)
157 cd08409 C2B_Synaptotagmin-15 C 99.6 5.8E-15 1.3E-19 142.6 8.5 115 271-393 2-124 (137)
158 cd08676 C2A_Munc13-like C2 dom 99.6 2.1E-14 4.6E-19 139.6 12.4 99 283-391 26-153 (153)
159 cd04049 C2_putative_Elicitor-r 99.6 2.8E-14 6.1E-19 135.9 13.0 105 285-394 1-109 (124)
160 cd04032 C2_Perforin C2 domain 99.6 1.8E-14 3.9E-19 135.7 11.2 93 283-376 26-119 (127)
161 cd08675 C2B_RasGAP C2 domain s 99.6 2.4E-14 5.2E-19 138.1 12.1 103 287-395 1-122 (137)
162 cd04009 C2B_Munc13-like C2 dom 99.6 2.7E-14 5.9E-19 137.5 12.5 91 612-716 16-118 (133)
163 cd04038 C2_ArfGAP C2 domain pr 99.6 2.9E-14 6.3E-19 138.0 12.7 92 285-378 2-93 (145)
164 cd04045 C2C_Tricalbin-like C2 99.6 4.1E-14 8.9E-19 133.2 13.2 104 285-395 1-105 (120)
165 cd08404 C2B_Synaptotagmin-4 C2 99.6 1.5E-14 3.3E-19 140.0 10.3 100 612-727 15-122 (136)
166 cd08692 C2B_Tac2-N C2 domain s 99.6 5.5E-14 1.2E-18 132.1 13.6 91 447-538 13-110 (135)
167 cd04021 C2_E3_ubiquitin_ligase 99.5 6.9E-14 1.5E-18 132.9 14.3 116 613-744 3-124 (125)
168 cd04026 C2_PKC_alpha_gamma C2 99.5 4.7E-14 1E-18 135.8 13.3 114 273-396 5-124 (131)
169 cd08676 C2A_Munc13-like C2 dom 99.5 4.2E-14 9.1E-19 137.5 12.1 102 443-554 23-153 (153)
170 cd08384 C2B_Rabphilin_Doc2 C2 99.5 2.1E-14 4.5E-19 138.7 9.9 102 610-727 11-120 (133)
171 cd04040 C2D_Tricalbin-like C2 99.5 6.4E-14 1.4E-18 131.6 12.9 112 287-405 1-113 (115)
172 cd04021 C2_E3_ubiquitin_ligase 99.5 1.3E-13 2.8E-18 131.1 14.9 120 286-408 3-124 (125)
173 cd00276 C2B_Synaptotagmin C2 d 99.5 1.7E-14 3.7E-19 139.7 8.8 115 273-396 4-125 (134)
174 cd04037 C2E_Ferlin C2 domain f 99.5 4.6E-14 9.9E-19 134.0 11.5 92 286-377 1-94 (124)
175 cd08403 C2B_Synaptotagmin-3-5- 99.5 2.2E-14 4.8E-19 138.5 9.4 114 273-395 4-124 (134)
176 cd08409 C2B_Synaptotagmin-15 C 99.5 2.9E-14 6.3E-19 137.7 9.5 102 611-727 14-123 (137)
177 KOG1011 Neurotransmitter relea 99.5 1E-14 2.3E-19 160.0 6.8 125 2-133 296-429 (1283)
178 cd08402 C2B_Synaptotagmin-1 C2 99.5 1.2E-13 2.6E-18 133.8 13.3 103 448-557 15-124 (136)
179 cd08410 C2B_Synaptotagmin-17 C 99.5 1.5E-13 3.2E-18 132.6 13.7 105 609-728 11-123 (135)
180 cd04035 C2A_Rabphilin_Doc2 C2 99.5 1.2E-13 2.6E-18 131.3 12.7 104 273-379 5-116 (123)
181 cd04052 C2B_Tricalbin-like C2 99.5 7.8E-14 1.7E-18 129.7 11.0 100 631-748 8-110 (111)
182 cd08405 C2B_Synaptotagmin-7 C2 99.5 1.7E-13 3.6E-18 132.8 13.6 103 448-557 15-124 (136)
183 cd04052 C2B_Tricalbin-like C2 99.5 4.6E-14 9.9E-19 131.2 9.2 102 17-129 8-110 (111)
184 cd08403 C2B_Synaptotagmin-3-5- 99.5 4.8E-14 1E-18 136.2 9.7 103 609-727 11-121 (134)
185 cd08408 C2B_Synaptotagmin-14_1 99.5 1.9E-13 4.1E-18 131.8 13.7 104 609-727 12-124 (138)
186 KOG0696 Serine/threonine prote 99.5 1.6E-14 3.5E-19 152.8 6.1 104 449-558 181-290 (683)
187 cd00275 C2_PLC_like C2 domain 99.5 1.2E-13 2.5E-18 132.7 11.6 117 1-127 2-127 (128)
188 cd00275 C2_PLC_like C2 domain 99.5 3.4E-13 7.3E-18 129.5 14.7 116 286-410 3-127 (128)
189 cd00276 C2B_Synaptotagmin C2 d 99.5 6E-14 1.3E-18 135.9 9.4 101 612-728 14-122 (134)
190 PLN03200 cellulose synthase-in 99.5 5.9E-14 1.3E-18 179.8 11.3 118 610-748 1978-2101(2102)
191 cd04035 C2A_Rabphilin_Doc2 C2 99.5 3.8E-13 8.3E-18 127.9 14.2 98 612-724 15-121 (123)
192 KOG1013 Synaptic vesicle prote 99.5 3.2E-14 6.9E-19 146.9 6.6 222 2-372 94-327 (362)
193 cd04037 C2E_Ferlin C2 domain f 99.5 3.4E-13 7.4E-18 128.0 11.8 89 450-539 2-92 (124)
194 cd04048 C2A_Copine C2 domain f 99.5 2.8E-13 6.1E-18 128.1 11.0 97 617-727 5-113 (120)
195 PLN03008 Phospholipase D delta 99.5 5.5E-13 1.2E-17 156.5 14.6 126 284-416 13-182 (868)
196 cd04048 C2A_Copine C2 domain f 99.5 5.6E-13 1.2E-17 126.0 12.0 98 291-393 6-114 (120)
197 cd08686 C2_ABR C2 domain in th 99.4 4.2E-13 9.2E-18 122.4 9.5 81 3-93 1-91 (118)
198 cd08686 C2_ABR C2 domain in th 99.4 1.9E-12 4.2E-17 118.1 13.0 87 614-713 1-92 (118)
199 cd04047 C2B_Copine C2 domain s 99.4 4.2E-12 9E-17 118.2 10.9 94 616-726 4-108 (110)
200 cd04047 C2B_Copine C2 domain s 99.3 6.9E-12 1.5E-16 116.7 11.7 88 289-377 4-101 (110)
201 KOG1011 Neurotransmitter relea 99.3 2.3E-12 4.9E-17 142.0 7.8 123 285-415 295-428 (1283)
202 PF06398 Pex24p: Integral pero 99.3 2.5E-11 5.3E-16 137.8 16.4 178 814-1006 2-195 (359)
203 KOG1328 Synaptic vesicle prote 99.3 4.7E-13 1E-17 149.6 1.3 128 3-135 116-308 (1103)
204 PF00168 C2: C2 domain; Inter 99.3 1.2E-11 2.7E-16 109.0 9.9 82 287-368 1-85 (85)
205 PLN03200 cellulose synthase-in 99.3 1E-11 2.2E-16 159.6 11.5 117 283-410 1978-2099(2102)
206 PF00168 C2: C2 domain; Inter 99.3 2.5E-11 5.4E-16 107.0 9.4 82 450-532 1-85 (85)
207 PLN02270 phospholipase D alpha 99.2 7E-11 1.5E-15 139.2 14.3 126 612-749 8-150 (808)
208 PF11696 DUF3292: Protein of u 99.1 9.5E-10 2.1E-14 125.9 16.5 84 809-893 82-170 (642)
209 cd08374 C2F_Ferlin C2 domain s 99.1 3.6E-10 7.7E-15 106.5 10.8 93 614-718 2-125 (133)
210 cd00030 C2 C2 domain. The C2 d 99.1 3.5E-10 7.6E-15 102.7 10.5 99 614-726 1-102 (102)
211 cd00030 C2 C2 domain. The C2 d 99.1 1E-09 2.2E-14 99.7 11.4 100 287-391 1-102 (102)
212 cd08374 C2F_Ferlin C2 domain s 99.1 9.3E-10 2E-14 103.7 11.1 92 287-378 2-125 (133)
213 smart00239 C2 Protein kinase C 99.1 8.8E-10 1.9E-14 100.3 10.8 91 614-718 2-96 (101)
214 smart00239 C2 Protein kinase C 99.0 1.5E-09 3.2E-14 98.8 11.2 92 287-378 2-96 (101)
215 PLN02223 phosphoinositide phos 99.0 2.2E-09 4.8E-14 121.9 14.6 117 285-409 409-535 (537)
216 PLN02223 phosphoinositide phos 99.0 5E-09 1.1E-13 119.1 14.8 106 612-731 409-522 (537)
217 PLN02952 phosphoinositide phos 98.9 8E-09 1.7E-13 120.2 14.3 118 284-409 469-597 (599)
218 KOG1328 Synaptic vesicle prote 98.9 1.7E-10 3.7E-15 129.5 0.6 126 283-414 112-304 (1103)
219 PLN02952 phosphoinositide phos 98.9 1E-08 2.2E-13 119.4 14.8 119 612-747 470-597 (599)
220 KOG1031 Predicted Ca2+-depende 98.9 3.3E-09 7.1E-14 116.2 10.0 119 612-746 3-135 (1169)
221 PLN02270 phospholipase D alpha 98.9 1.4E-08 2.9E-13 120.2 14.4 125 284-415 7-152 (808)
222 KOG1327 Copine [Signal transdu 98.9 2.7E-08 5.9E-13 112.0 15.1 181 480-716 41-236 (529)
223 PLN02230 phosphoinositide phos 98.8 1.3E-08 2.7E-13 118.4 11.7 117 2-127 470-597 (598)
224 PLN02230 phosphoinositide phos 98.8 2.4E-08 5.3E-13 116.0 12.7 119 284-410 468-597 (598)
225 PLN02228 Phosphoinositide phos 98.8 5.5E-08 1.2E-12 112.6 14.5 122 612-748 431-562 (567)
226 cd08689 C2_fungal_Pkc1p C2 dom 98.8 2E-08 4.2E-13 88.3 8.2 86 614-715 1-87 (109)
227 PLN02222 phosphoinositide phos 98.8 4.7E-08 1E-12 113.5 13.9 118 285-410 452-580 (581)
228 PLN02222 phosphoinositide phos 98.8 6.6E-08 1.4E-12 112.3 14.8 120 612-746 452-580 (581)
229 cd08689 C2_fungal_Pkc1p C2 dom 98.8 2.3E-08 4.9E-13 87.9 7.7 84 3-97 1-88 (109)
230 PLN02228 Phosphoinositide phos 98.8 6.6E-08 1.4E-12 112.0 13.8 120 285-412 431-562 (567)
231 KOG0169 Phosphoinositide-speci 98.7 4.1E-08 8.9E-13 113.6 11.3 118 285-410 616-743 (746)
232 KOG1264 Phospholipase C [Lipid 98.7 6.2E-08 1.4E-12 110.5 10.1 120 1-130 1065-1191(1267)
233 KOG0169 Phosphoinositide-speci 98.7 1.2E-07 2.5E-12 110.0 12.2 120 613-747 617-744 (746)
234 KOG1031 Predicted Ca2+-depende 98.7 4.9E-08 1.1E-12 107.2 8.4 110 448-558 3-122 (1169)
235 PLN02352 phospholipase D epsil 98.6 2.9E-07 6.2E-12 109.1 12.4 118 612-750 10-133 (758)
236 KOG1327 Copine [Signal transdu 98.6 5.6E-07 1.2E-11 101.6 13.8 181 318-540 42-236 (529)
237 KOG1264 Phospholipase C [Lipid 98.5 3.3E-07 7.1E-12 104.8 10.8 119 285-412 1065-1190(1267)
238 KOG0905 Phosphoinositide 3-kin 98.4 2.4E-07 5.1E-12 110.1 5.6 113 273-394 1516-1636(1639)
239 PLN02352 phospholipase D epsil 98.3 5.7E-06 1.2E-10 98.3 12.5 119 284-415 9-134 (758)
240 cd08683 C2_C2cd3 C2 domain fou 98.3 1.1E-06 2.4E-11 79.5 4.9 112 614-726 1-143 (143)
241 KOG0905 Phosphoinositide 3-kin 98.2 1.3E-06 2.8E-11 104.1 4.8 107 2-111 1525-1636(1639)
242 cd08683 C2_C2cd3 C2 domain fou 98.0 6.3E-06 1.4E-10 74.8 4.9 106 3-108 1-143 (143)
243 PF12416 DUF3668: Cep120 prote 97.9 0.0013 2.7E-08 72.4 21.6 238 450-715 2-294 (340)
244 PF12416 DUF3668: Cep120 prote 97.9 0.0025 5.5E-08 70.1 22.4 245 287-541 2-296 (340)
245 PLN02964 phosphatidylserine de 97.5 0.00011 2.3E-09 87.3 6.4 89 445-541 51-140 (644)
246 KOG3837 Uncharacterized conser 97.5 0.0001 2.2E-09 79.3 4.2 117 613-746 368-502 (523)
247 cd08684 C2A_Tac2-N C2 domain f 97.4 0.00012 2.6E-09 61.6 3.5 96 4-106 2-101 (103)
248 cd08684 C2A_Tac2-N C2 domain f 97.4 0.0002 4.4E-09 60.3 4.4 87 452-541 3-95 (103)
249 KOG2060 Rab3 effector RIM1 and 97.3 0.00022 4.8E-09 76.4 4.6 106 2-112 270-381 (405)
250 PLN02964 phosphatidylserine de 97.3 0.00029 6.3E-09 83.6 5.7 88 284-378 53-141 (644)
251 KOG2060 Rab3 effector RIM1 and 97.3 0.00013 2.8E-09 78.1 2.5 106 610-728 267-379 (405)
252 KOG3837 Uncharacterized conser 96.6 0.00089 1.9E-08 72.3 1.9 122 3-128 369-503 (523)
253 PF15627 CEP76-C2: CEP76 C2 do 95.7 0.11 2.3E-06 50.4 10.8 127 284-413 8-152 (156)
254 KOG1265 Phospholipase C [Lipid 95.7 0.034 7.4E-07 65.9 8.8 96 448-558 703-807 (1189)
255 KOG1265 Phospholipase C [Lipid 95.6 0.055 1.2E-06 64.3 10.1 109 284-408 702-820 (1189)
256 PF08372 PRT_C: Plant phosphor 95.5 0.06 1.3E-06 52.1 8.3 49 818-866 62-110 (156)
257 PF15627 CEP76-C2: CEP76 C2 do 95.5 0.2 4.3E-06 48.5 11.7 96 445-541 6-118 (156)
258 cd08398 C2_PI3K_class_I_alpha 95.4 0.078 1.7E-06 52.1 8.9 107 1-128 8-122 (158)
259 cd08693 C2_PI3K_class_I_beta_d 95.3 0.088 1.9E-06 52.8 9.0 91 2-94 9-119 (173)
260 KOG1452 Predicted Rho GTPase-a 94.9 0.061 1.3E-06 56.4 6.8 114 2-129 52-168 (442)
261 cd08693 C2_PI3K_class_I_beta_d 94.9 0.16 3.5E-06 50.9 9.6 86 449-537 9-119 (173)
262 cd08398 C2_PI3K_class_I_alpha 94.7 0.22 4.9E-06 48.9 9.9 83 450-537 10-105 (158)
263 cd08380 C2_PI3K_like C2 domain 94.5 0.16 3.4E-06 50.3 8.4 92 2-94 9-106 (156)
264 PF10358 NT-C2: N-terminal C2 94.5 0.81 1.8E-05 44.4 13.4 114 613-748 8-136 (143)
265 PF02453 Reticulon: Reticulon; 94.4 0.015 3.3E-07 58.4 1.0 65 947-1011 92-156 (169)
266 cd08397 C2_PI3K_class_III C2 d 93.8 0.45 9.8E-06 46.9 9.9 93 305-418 29-130 (159)
267 KOG1452 Predicted Rho GTPase-a 93.7 0.13 2.9E-06 54.0 6.2 75 610-686 49-124 (442)
268 PF10358 NT-C2: N-terminal C2 93.5 1.4 3E-05 42.7 12.9 105 447-557 6-121 (143)
269 cd08380 C2_PI3K_like C2 domain 93.5 0.47 1E-05 46.9 9.6 87 450-538 10-107 (156)
270 cd08399 C2_PI3K_class_I_gamma 93.2 0.85 1.8E-05 45.7 10.8 97 613-713 11-121 (178)
271 cd04012 C2A_PI3K_class_II C2 d 92.4 0.56 1.2E-05 47.1 8.5 114 2-132 9-139 (171)
272 cd08687 C2_PKN-like C2 domain 92.4 0.81 1.8E-05 39.6 7.9 84 21-127 8-92 (98)
273 cd08397 C2_PI3K_class_III C2 d 92.4 0.52 1.1E-05 46.5 8.0 70 468-538 29-107 (159)
274 cd04012 C2A_PI3K_class_II C2 d 91.8 0.76 1.7E-05 46.1 8.5 90 449-538 9-119 (171)
275 cd08399 C2_PI3K_class_I_gamma 91.8 1.1 2.4E-05 44.9 9.5 69 450-520 12-88 (178)
276 cd08687 C2_PKN-like C2 domain 89.0 4.1 8.8E-05 35.4 9.0 63 306-374 9-72 (98)
277 PF08151 FerI: FerI (NUC094) d 88.4 0.91 2E-05 37.9 4.8 44 533-585 1-44 (72)
278 PF00792 PI3K_C2: Phosphoinosi 88.3 4.1 8.8E-05 39.5 10.2 66 638-714 4-85 (142)
279 smart00142 PI3K_C2 Phosphoinos 87.9 2.5 5.4E-05 38.1 7.8 72 3-74 13-90 (100)
280 PF00792 PI3K_C2: Phosphoinosi 87.2 6.3 0.00014 38.1 10.8 75 320-415 23-105 (142)
281 PF11696 DUF3292: Protein of u 86.9 1.6 3.4E-05 51.7 7.4 65 944-1011 104-169 (642)
282 smart00142 PI3K_C2 Phosphoinos 86.2 4 8.6E-05 36.9 8.2 70 450-520 13-91 (100)
283 PF06398 Pex24p: Integral pero 85.1 1.9 4.1E-05 49.1 6.9 70 935-1004 9-87 (359)
284 PF15625 CC2D2AN-C2: CC2D2A N- 83.8 18 0.00038 36.2 12.3 82 635-728 36-124 (168)
285 cd08695 C2_Dock-B C2 domains f 83.2 9.9 0.00022 38.4 10.1 39 318-356 54-94 (189)
286 PF15625 CC2D2AN-C2: CC2D2A N- 82.6 17 0.00038 36.2 11.7 88 469-558 37-126 (168)
287 cd08695 C2_Dock-B C2 domains f 80.9 16 0.00035 36.9 10.6 39 481-520 54-94 (189)
288 KOG1329 Phospholipase D1 [Lipi 80.8 1.9 4.2E-05 52.6 4.8 106 634-750 136-243 (887)
289 PF14429 DOCK-C2: C2 domain in 78.5 7.8 0.00017 39.4 7.9 61 648-718 60-123 (184)
290 cd08694 C2_Dock-A C2 domains f 78.1 21 0.00045 36.3 10.4 39 318-356 54-94 (196)
291 PF11618 DUF3250: Protein of u 77.9 17 0.00036 33.2 8.8 93 639-747 2-105 (107)
292 cd08694 C2_Dock-A C2 domains f 77.7 25 0.00053 35.8 10.7 56 480-536 53-114 (196)
293 KOG3543 Ca2+-dependent activat 72.3 17 0.00036 42.2 8.8 100 613-728 342-441 (1218)
294 PF14429 DOCK-C2: C2 domain in 72.0 14 0.00029 37.6 7.6 56 318-373 60-120 (184)
295 PTZ00447 apical membrane antig 71.6 40 0.00086 36.6 10.9 116 444-581 54-171 (508)
296 PF11618 DUF3250: Protein of u 70.9 14 0.0003 33.7 6.5 95 309-410 2-104 (107)
297 cd05137 RasGAP_CLA2_BUD2 CLA2/ 68.7 11 0.00025 42.9 6.8 45 703-749 1-46 (395)
298 PF06219 DUF1005: Protein of u 68.1 52 0.0011 37.0 11.2 110 635-749 35-169 (460)
299 PTZ00447 apical membrane antig 63.1 79 0.0017 34.5 11.0 108 613-744 59-170 (508)
300 KOG0694 Serine/threonine prote 61.6 3.1 6.7E-05 49.4 0.5 95 20-128 26-121 (694)
301 cd08696 C2_Dock-C C2 domains f 61.5 40 0.00087 33.9 8.3 62 647-713 54-118 (179)
302 PF09726 Macoilin: Transmembra 60.4 20 0.00043 44.3 7.1 18 979-996 89-106 (697)
303 KOG2419 Phosphatidylserine dec 55.9 2.6 5.6E-05 48.9 -1.3 174 449-685 281-462 (975)
304 cd08697 C2_Dock-D C2 domains f 55.7 64 0.0014 32.7 8.6 65 647-713 56-123 (185)
305 KOG1792 Reticulon [Intracellul 53.7 75 0.0016 33.4 9.0 59 947-1005 132-190 (230)
306 PF04842 DUF639: Plant protein 53.1 20 0.00043 43.0 5.2 62 939-1000 490-554 (683)
307 cd08679 C2_DOCK180_related C2 52.3 30 0.00064 34.9 5.8 56 37-93 56-114 (178)
308 KOG1329 Phospholipase D1 [Lipi 51.4 30 0.00065 42.7 6.4 86 306-397 138-225 (887)
309 TIGR02302 aProt_lowcomp conser 51.3 1.3E+02 0.0027 38.1 11.9 51 959-1011 133-197 (851)
310 PF04281 Tom22: Mitochondrial 49.9 69 0.0015 30.6 7.3 39 923-961 49-89 (137)
311 cd08696 C2_Dock-C C2 domains f 49.6 52 0.0011 33.1 6.8 40 480-520 54-95 (179)
312 cd08679 C2_DOCK180_related C2 49.0 52 0.0011 33.1 7.0 54 481-536 54-114 (178)
313 cd08697 C2_Dock-D C2 domains f 46.7 75 0.0016 32.2 7.5 39 318-356 57-97 (185)
314 PF07162 B9-C2: Ciliary basal 45.0 2.5E+02 0.0054 28.0 11.0 81 450-536 4-102 (168)
315 KOG0904 Phosphatidylinositol 3 43.6 97 0.0021 38.3 8.8 110 612-727 343-473 (1076)
316 PF10409 PTEN_C2: C2 domain of 43.3 2.8E+02 0.006 26.2 10.8 88 450-539 6-98 (134)
317 KOG4111 Translocase of outer m 41.5 67 0.0015 30.1 5.6 54 923-977 40-95 (136)
318 KOG4027 Uncharacterized conser 41.1 1.3E+02 0.0028 29.2 7.5 69 635-714 25-111 (187)
319 PF07162 B9-C2: Ciliary basal 40.4 2.8E+02 0.0061 27.6 10.6 81 614-714 4-104 (168)
320 COG4920 Predicted membrane pro 39.0 2.5E+02 0.0055 28.5 9.4 13 997-1009 158-170 (249)
321 KOG3850 Predicted membrane pro 37.3 1.1E+02 0.0025 33.9 7.4 28 958-985 389-416 (455)
322 PF06219 DUF1005: Protein of u 36.6 1.8E+02 0.0038 33.1 8.9 109 469-584 36-168 (460)
323 PF02453 Reticulon: Reticulon; 35.3 12 0.00027 37.1 0.0 28 955-982 1-28 (169)
324 KOG3543 Ca2+-dependent activat 33.7 2.8E+02 0.0061 32.8 10.1 102 284-396 340-444 (1218)
325 KOG0860 Synaptobrevin/VAMP-lik 32.6 1.2E+02 0.0026 27.9 5.7 33 939-971 67-99 (116)
326 PF00957 Synaptobrevin: Synapt 32.3 1.4E+02 0.0029 26.1 6.1 31 939-969 41-71 (89)
327 PF14909 SPATA6: Spermatogenes 31.9 3E+02 0.0066 26.4 8.5 86 449-539 3-100 (140)
328 PF08151 FerI: FerI (NUC094) d 30.8 66 0.0014 27.0 3.5 42 381-422 11-53 (72)
329 PF10779 XhlA: Haemolysin XhlA 30.6 2.5E+02 0.0054 23.4 7.1 35 927-961 18-52 (71)
330 PRK09459 pspG phage shock prot 26.8 1.3E+02 0.0028 25.2 4.4 23 976-999 40-62 (76)
331 PHA01159 hypothetical protein 26.7 2E+02 0.0043 26.4 6.0 33 931-963 5-37 (114)
332 KOG0904 Phosphatidylinositol 3 26.2 1.3E+02 0.0028 37.3 6.2 69 2-73 344-420 (1076)
333 TIGR00986 3a0801s05tom22 mitoc 24.7 3E+02 0.0064 26.5 7.0 39 924-962 48-88 (145)
334 KOG4269 Rac GTPase-activating 24.6 40 0.00086 41.4 1.7 103 610-725 757-865 (1112)
335 PF14186 Aida_C2: Cytoskeletal 23.7 3.8E+02 0.0083 26.0 7.7 91 612-718 13-116 (147)
336 PF14924 DUF4497: Protein of u 23.6 1.9E+02 0.0041 26.6 5.7 64 674-748 28-105 (112)
337 PF08174 Anillin: Cell divisio 23.2 3.7E+02 0.0081 25.6 7.9 48 637-684 35-89 (140)
338 cd05137 RasGAP_CLA2_BUD2 CLA2/ 22.4 76 0.0017 36.4 3.3 16 819-834 193-208 (395)
339 KOG4027 Uncharacterized conser 21.3 3.2E+02 0.0069 26.6 6.5 73 19-93 23-109 (187)
340 PF13779 DUF4175: Domain of un 20.1 3.7E+02 0.0081 34.1 8.8 50 959-1010 122-184 (820)
No 1
>PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins. It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO).
Probab=100.00 E-value=8.3e-43 Score=329.03 Aligned_cols=156 Identities=74% Similarity=1.314 Sum_probs=153.4
Q ss_pred HHHHHHHHHHHHhhccccCCCCCCCCCCCccccccCCCCCCCcccCCCCCCCChhHHHHHHHHHHHHHhhHHHHHHHHHh
Q 001696 871 LPTVFLYMFLIGLWNYRFRPRHPPHMDTKLSWAEAVHPDELDEEFDTFPTSKTHDIVRIRYDRLRSVAGRIQTVVGDIAT 950 (1026)
Q Consensus 871 lp~~~l~l~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~e~~~e~~~~~~~~~~~~~~~r~~~l~~~~~~vQ~~l~~~a~ 950 (1026)
+|.+|++++++++|||.++|++|+|+|.+++.+|..++||+|||+|++|++++++.++|||++||+++++|||.||++|+
T Consensus 1 lp~~~l~~~~~~~w~yr~rpr~p~~~d~~ls~~~~~~~deldEEfD~~ps~~~~~~lr~Rydrlr~va~rvQ~vlgd~At 80 (156)
T PF08372_consen 1 LPTVFLYLFLIGLWNYRFRPRHPPHMDTKLSHADSAHPDELDEEFDTFPSSRPPDSLRMRYDRLRSVAGRVQNVLGDVAT 80 (156)
T ss_pred CchHHHHHHHHHHhccccCCCCCCCCCccccccccCCcchhhhhhcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHhHhhhccccCchhHHHHHHHHHHHHHHHhhhhhHHHHHHHhhhhhcCCCCCCCCCCchhhhhhcCCCCcCCCC
Q 001696 951 QGERFQSLLSWRDPRATALFILFSLCAAMVLYTTPFKVVALLAGLYYLRHPRFRSKLPSVPSNFFKRMPARTDSLL 1026 (1026)
Q Consensus 951 ~le~~~~l~~w~~p~~t~~~~~~l~~~~i~l~~iP~r~i~l~~g~~~~r~P~~~~~~p~~~~~~~~r~P~~~d~~~ 1026 (1026)
++||++|+|+|+||.+|.+++++|+++++++|++|+|+++++||+|++|||+||.++|+.++|||+||||++|+||
T Consensus 81 ~gERl~allsWrdP~aT~lf~~~clv~avvly~vP~r~l~l~~gly~~r~P~~R~~~P~~~~nff~RlPs~~d~~l 156 (156)
T PF08372_consen 81 QGERLQALLSWRDPRATALFVVFCLVAAVVLYFVPFRVLVLIWGLYKLRHPRFRNPLPSPPLNFFRRLPSRSDSML 156 (156)
T ss_pred HHHHHHHhhccCCccHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCccccCCCCcHHHHHHHHCCCchhhcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999997
No 2
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=100.00 E-value=3.2e-35 Score=343.55 Aligned_cols=553 Identities=19% Similarity=0.245 Sum_probs=389.5
Q ss_pred ceEEEEeecCCCccCC--CCCCCCCEEEEEeCC-ceeeeccCCCCCCcccceeEEEeccCCCCCccceEEEEEeeCCCCC
Q 001696 2 KLVVEVVDAYDLMPKD--GEGSASPFAEVDFLN-QLSKTKTIPKNLNPVWNQKLLFDFDQTKSHNHLRIEVSIYHHERRP 78 (1026)
Q Consensus 2 ~L~V~v~~a~~L~~~~--~~g~~dpyv~v~~~~-~~~~T~~~~~t~nP~Wne~f~f~~~~~~~~~~~~L~~~V~d~d~~~ 78 (1026)
+|.|+|.+|++|...+ .+++.|||+++.+.+ ...+|+++++++||+|||+|+..+.... +.|.+.|||+++.
T Consensus 437 Vv~vkI~sa~~lk~~d~~i~~~vDpyit~~~~~r~~gkT~v~~nt~nPvwNEt~Yi~lns~~----d~L~LslyD~n~~- 511 (1227)
T COG5038 437 VVEVKIKSAEGLKKSDSTINGTVDPYITVTFSDRVIGKTRVKKNTLNPVWNETFYILLNSFT----DPLNLSLYDFNSF- 511 (1227)
T ss_pred EEEEEEeeccCcccccccccCCCCceEEEEeccccCCccceeeccCCccccceEEEEecccC----CceeEEEEecccc-
Confidence 5789999999998887 579999999999844 5679999999999999999999998776 6999999995553
Q ss_pred CCCCccceeEEecCccccccCCceeEEeeccccccccccccccceeEEecCCCCCCCCCCCCCCCCCCCCCCCCCCCccc
Q 001696 79 IPGRHFLGRVRIPCSNLVRKGEEVYQRFPLEKKWFLSSVKGEVGLKIYISPQSETTQPPTSSLPKPKSPKNTTNLDSKTF 158 (1026)
Q Consensus 79 ~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (1026)
..|+.+|.+.++|..|..++.....-|.+.. ..+..|+|...+.|++......
T Consensus 512 -~sd~vvG~~~l~L~~L~~~~~~~ne~~e~~~---~~k~vGrL~yDl~ffp~~e~k~----------------------- 564 (1227)
T COG5038 512 -KSDKVVGSTQLDLALLHQNPVKKNELYEFLR---NTKNVGRLTYDLRFFPVIEDKK----------------------- 564 (1227)
T ss_pred -CCcceeeeEEechHHhhhccccccceeeeec---cCccceEEEEeeeeecccCCcc-----------------------
Confidence 4899999999999999887754444344432 3456899999999987655422
Q ss_pred CCCcchhhccccCCCCCCCccccccccccccccCCcCCCCcchhhhcccccccCCCCCCCCCCCCCCccccccCcCCCCC
Q 001696 159 TALPKVEELAAVDAPKSLPEEEISRISLKEDIKEPAKVTVEPIQEFLKQQVVLQPGQSVEKQPQGVPFTMHSMNLQQGRP 238 (1026)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (1026)
.. +.. .
T Consensus 565 ~~----------------------------~~s------------------------------~---------------- 570 (1227)
T COG5038 565 EL----------------------------KGS------------------------------V---------------- 570 (1227)
T ss_pred cc----------------------------ccc------------------------------c----------------
Confidence 00 000 0
Q ss_pred CCcccCcccCCCCCCCCCCCCCCCCCCCcccccceeEeeeccccceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-
Q 001696 239 GDQEEYNLKDTNPQLGERWPNGGGYGGRGWMSGERFTSTYDLVEQMSYLYVRVVKAKDLPPSSITGSCDPYVEVKMGNY- 317 (1026)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~y~~~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~- 317 (1026)
+. ..+ ...|.+.+++.++++|..... ....-++++++..+
T Consensus 571 ---------e~---------------------------~ed--~n~GI~k~tl~~~~~l~~~~~-~~~~~~a~l~~~~ke 611 (1227)
T COG5038 571 ---------EP---------------------------LED--SNTGILKVTLREVKALDELSS-KKDNKSAELYTNAKE 611 (1227)
T ss_pred ---------CC---------------------------ccc--CCcceeEEEeeccccccCccc-cccceeEEEEecceE
Confidence 00 000 023789999999999965421 12233488998886
Q ss_pred eeEeeeecCCCCCeEeEEEEEEecCCCCCeEEEEEEeCCCCCCCceeEEEEEEccccCCCCCCCCCCCCEEEEeecCCCC
Q 001696 318 KGRTKHFEKRMNPEWNQVFAFSKERIQSSMLEVFLKDKEMVGRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLEDRRGE 397 (1026)
Q Consensus 318 ~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~ 397 (1026)
.+.|+.++.+.+|.||+.+...+.+-....+.+.++|.. ..+.||+...+|.++...... ...||++..+
T Consensus 612 V~st~~~k~t~~~~wn~~~~~~v~~~~ns~~~~~~~d~~---~g~~i~~~~~~l~~li~~t~d----t~~~f~~~~~--- 681 (1227)
T COG5038 612 VYSTGKLKFTNHPSWNLQYNVLVTDRKNSSIKVVTFDVQ---SGKVIATEGSTLPDLIDRTLD----TFLVFPLRNP--- 681 (1227)
T ss_pred EeccceeeeccCCceeeecceEeccCcceeEEEEecccc---cCceeccccccchHhhhcccc----ceEEEEcCCC---
Confidence 567789999999999999999998887889999999876 356899999999888755432 2489998854
Q ss_pred CcccceEEEEEEecccCchhhhhcccccCccccCCCccccccccccCCceEEEEEEEEEeEecCCCCCCCCCCcEEEEEE
Q 001696 398 GKVRGQTMLAIWMGTQADEAFAEAWHSDASSVYGEGVFNIRSKVYVSPKLWYLRVNVIEAQDIVPNDRNRLPEGFVKVQV 477 (1026)
Q Consensus 398 ~~~~G~i~l~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~~r~~~~~~p~~~~l~V~I~~a~~L~~~d~~~~~dpyV~v~l 477 (1026)
.|+|.++....+..... ...++.+.....|.++|.|..|.+|......+.+|||++|.+
T Consensus 682 ---kg~I~~t~~W~Pi~~~~------------------~~~s~~~~~~pIg~irv~v~~andl~n~i~g~~~dPya~v~~ 740 (1227)
T COG5038 682 ---KGRIFITNYWKPIYNAG------------------GSSSKTVYDTPIGAIRVSVRKANDLRNEIPGGKSDPYATVLV 740 (1227)
T ss_pred ---cceEEEEeccceeeccc------------------cccceeeecCccceEEEEeehhhcccccccCcccccceEEEe
Confidence 38899887544322100 011233345667889999999999998778899999999999
Q ss_pred CC-eEEEeeeecCCCCCCcccceeEEEeeCCCcCeEEEEEEEccCCCCCceeEEEEEeCcccccccCCCC----------
Q 001696 478 GN-QVLKTKICPTPTTNPLWNEDLVFVAAEPFEEQLFLTVEDRVHASKDEVLGKISLPLHIFEKRLDHRP---------- 546 (1026)
Q Consensus 478 g~-~~~kT~~~~~~t~nP~wne~f~f~v~~~~~~~L~i~V~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~---------- 546 (1026)
++ .++||-.. ..+.||.||+..+.++..+.. .+.+..+|++..+.|..+|++.|+++++..+.++..
T Consensus 741 n~~~k~rti~~-~~~~npiw~~i~Yv~v~sk~~-r~~l~~~~~~~sgddr~lg~~~i~vsn~~~k~~~s~~~~~i~g~~~ 818 (1227)
T COG5038 741 NNLVKYRTIYG-SSTLNPIWNEILYVPVTSKNQ-RLTLECMDYEESGDDRNLGEVNINVSNVSKKDEDSALMETIDGAEE 818 (1227)
T ss_pred cceeEEEEecc-cCccccceeeeEEEEecCCcc-EEeeeeecchhccccceeceeeeeeeeeeecCCCcceEEeecCccc
Confidence 76 57888888 699999999999999988644 699999999999999999999999999887432210
Q ss_pred ----------------ccceeEEcccCCCC------------------------c-----hhhh-----------hhc--
Q 001696 547 ----------------VHSRWFNLEKFGFG------------------------A-----IEAD-----------RRK-- 568 (1026)
Q Consensus 547 ----------------~~~~w~~L~~~~~~------------------------~-----~~~~-----------~~~-- 568 (1026)
...+.|+....... . .+.. ...
T Consensus 819 t~~l~~~~~~~~~tit~~~~f~p~~i~~s~ee~~~~~k~~~e~~~~~~~~~~l~ek~~~~~D~~~~~~e~~~v~~~~d~~ 898 (1227)
T COG5038 819 TGKLSLTGKKVKGTITYKCRFYPAVIVLSLEEVRYVDKVSSEKRKSEKRKSALDEKTISLVDKEDSVEESIEVEELTDMY 898 (1227)
T ss_pred ccccccccCCcceeEEEEEEEEeecccCChHHhcchhhhhhHHHHhhhhhcccCccccchhccccchhcceeeccccchh
Confidence 00111111000000 0 0000 000
Q ss_pred ----------c-ccccceEE--------------------------------------------------------EEEE
Q 001696 569 ----------E-LKFSSRVH--------------------------------------------------------LRVC 581 (1026)
Q Consensus 569 ----------~-~~~~g~l~--------------------------------------------------------l~~~ 581 (1026)
. .-..|-+- +++.
T Consensus 899 ~~k~k~~lne~lq~~sgv~~i~i~~g~l~~~~~~l~~f~Dd~~~~~i~s~~~~t~~~~~~~~g~~~ireL~~s~~tfrv~ 978 (1227)
T COG5038 899 SLKPKLDLNEALQYKSGVLGIQILSGELPDPGQYLQIFFDDASHPQIVSSKAPTRGERNGESGDTFIRELEYSETTFRVT 978 (1227)
T ss_pred hcchhhhhhhhhcccCCceEEEEEEeecCCcceEEEEEecCCCCceeeccCCcccccccchhhhhhhhhhccceEEEEec
Confidence 0 00000000 0000
Q ss_pred e----cC----CccccC---Ccccc-------cC---------CccccccccC----CCCceEEEEEEEEecCCCCCccC
Q 001696 582 L----EG----GYHVLD---ESTMY-------IS---------DQRPTAKQLW----KPPVGILEVGILGAQGLLPMKMK 630 (1026)
Q Consensus 582 ~----~~----~~~~~~---~~~~~-------~~---------d~~~~~~~~~----~~~~g~L~v~v~~a~~L~~~~~~ 630 (1026)
= .+ ...... ....+ .. +..|....+- -.+.|.|.|.+..|.||+..
T Consensus 979 K~a~~~dk~v~e~t~~t~~lvs~~~~kp~~ln~~g~~~~~v~~~~tPv~~~l~~~emv~nsG~l~I~~~~~~nl~~~--- 1055 (1227)
T COG5038 979 KNAKKSDKVVCEVTLPTLDLVSNAYEKPSSLNFPGSAKVLVQVSYTPVPVKLPPVEMVENSGYLTIMLRSGENLPSS--- 1055 (1227)
T ss_pred cCCcccCceeeecccchhHHHHHhhCCCcEEecCCCceEEEEEEEeecccccCcceeecccCcEEEEEeccCCCccc---
Confidence 0 00 000000 00000 00 0112211110 13469999999999999987
Q ss_pred CCCCCcCcEEEEEECCE-EEEeeeecCCCCceeecEEEEEeeC-CCCEEEEEEEeCCCCCCCCccCCCCCCCCCeeEEEE
Q 001696 631 DGRGSTDAYCIAKYGQK-WVRTRTILDTFNPKWNEQYTWEVYD-PCTVITLGVFDNCHLGGGEKQNGSSAVRDSRIGKVR 708 (1026)
Q Consensus 631 ~~~~~~dpyv~v~~g~~-~~~T~~~~~t~~P~wne~~~~~v~~-~~~~l~i~v~d~~~~~~~~~~~~~~~~~~~~lG~~~ 708 (1026)
|.+|.+||||++.++++ .++|+++++++||.|||.+..+|.. ..+.++|.|+|||.- ++++.||++.
T Consensus 1056 d~ng~sDpfv~~~ln~k~vyktkv~KktlNPvwNEe~~i~v~~r~~D~~~i~v~Dwd~~-----------~knd~lg~~~ 1124 (1227)
T COG5038 1056 DENGYSDPFVKLFLNEKSVYKTKVVKKTLNPVWNEEFTIEVLNRVKDVLTINVNDWDSG-----------EKNDLLGTAE 1124 (1227)
T ss_pred ccCCCCCceEEEEecceecccccchhccCCCCccccceEeeeccccceEEEEEeecccC-----------CCcccccccc
Confidence 77899999999999877 7999999999999999999999995 578899999999973 4899999999
Q ss_pred EEcccccCCceEeeeEeeeecCCCCCccCcEEEEEEEEee
Q 001696 709 IRLSTLEAHRIYTHSYPLLVLHPHGVKKMGELQLAIRFTI 748 (1026)
Q Consensus 709 i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~~ 748 (1026)
|+|+.|+.+..+....+|.++. .+ ...|.++....|.+
T Consensus 1125 idL~~l~~~~~~n~~i~ldgk~-~~-~~~g~~~~~~~~r~ 1162 (1227)
T COG5038 1125 IDLSKLEPGGTTNSNIPLDGKT-FI-VLDGTLHPGFNFRS 1162 (1227)
T ss_pred ccHhhcCcCCccceeeeccCcc-eE-ecccEeecceecch
Confidence 9999999998888888886433 11 22466666555543
No 3
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=5.7e-27 Score=265.41 Aligned_cols=227 Identities=30% Similarity=0.466 Sum_probs=195.4
Q ss_pred ccc-eeEeeeccccceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC---eeeEeeeecCCCCCeEeEEEEEEec--CC
Q 001696 270 SGE-RFTSTYDLVEQMSYLYVRVVKAKDLPPSSITGSCDPYVEVKMGN---YKGRTKHFEKRMNPEWNQVFAFSKE--RI 343 (1026)
Q Consensus 270 ~g~-~~~~~y~~~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~---~~~kT~~~~~t~nP~wne~f~f~v~--~~ 343 (1026)
.|. +|++.|+. +...|.|+|++|++|+.++..|.+||||++++.. .+.+|++.++|+||.|||+|.|.+. +.
T Consensus 153 ~G~l~fsl~Yd~--~~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~tlnP~fnEtf~f~v~~~~l 230 (421)
T KOG1028|consen 153 VGNLQFSLQYDF--ELNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRKTLNPVFNETFRFEVPYEEL 230 (421)
T ss_pred eeeEEEEEEecc--cCCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeecCcCCccccceEeecCHHHh
Confidence 345 89999998 6799999999999999999778899999999986 4689999999999999999999963 45
Q ss_pred CCCeEEEEEEeCCCCCCCceeEEEEEEccccCCCCCCCCCCCCEEEEeecCCCCC-cccceEEEEEEecccCchhhhhcc
Q 001696 344 QSSMLEVFLKDKEMVGRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLEDRRGEG-KVRGQTMLAIWMGTQADEAFAEAW 422 (1026)
Q Consensus 344 ~~~~L~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~-~~~G~i~l~~~~~~~~d~~~~~~~ 422 (1026)
....|.+.|||+|.++++++||++.++|..+....... .|.+|....... ...|+|.++++|.+.+
T Consensus 231 ~~~~L~l~V~~~drfsr~~~iGev~~~l~~~~~~~~~~-----~w~~l~~~~~~~~~~~gel~~sL~Y~p~~-------- 297 (421)
T KOG1028|consen 231 SNRVLHLSVYDFDRFSRHDFIGEVILPLGEVDLLSTTL-----FWKDLQPSSTDSEELAGELLLSLCYLPTA-------- 297 (421)
T ss_pred ccCEEEEEEEecCCcccccEEEEEEecCccccccccce-----eeeccccccCCcccccceEEEEEEeecCC--------
Confidence 67899999999999999999999999999887765433 799998864332 2337999999986642
Q ss_pred cccCccccCCCccccccccccCCceEEEEEEEEEeEecCCCCCCCCCCcEEEEEE--CC---eEEEeeeecCCCCCCccc
Q 001696 423 HSDASSVYGEGVFNIRSKVYVSPKLWYLRVNVIEAQDIVPNDRNRLPEGFVKVQV--GN---QVLKTKICPTPTTNPLWN 497 (1026)
Q Consensus 423 ~~d~~~~~~~~~~~~r~~~~~~p~~~~l~V~I~~a~~L~~~d~~~~~dpyV~v~l--g~---~~~kT~~~~~~t~nP~wn 497 (1026)
+.|+|.|++|++|..++.++.+||||++++ ++ .+.+|.++ +++.||+||
T Consensus 298 -------------------------g~ltv~v~kar~L~~~~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~-~~~~npv~n 351 (421)
T KOG1028|consen 298 -------------------------GRLTVVVIKARNLKSMDVGGLSDPYVKVTLLDGDKRLSKKKTSVK-KKTLNPVFN 351 (421)
T ss_pred -------------------------CeEEEEEEEecCCCcccCCCCCCccEEEEEecCCceeeeeeeecc-cCCCCCccc
Confidence 469999999999999999999999999999 32 35678888 799999999
Q ss_pred ceeEEEeeCC--CcCeEEEEEEEccCCCCCceeEEEEEeCcc
Q 001696 498 EDLVFVAAEP--FEEQLFLTVEDRVHASKDEVLGKISLPLHI 537 (1026)
Q Consensus 498 e~f~f~v~~~--~~~~L~i~V~d~d~~~~d~~lG~~~i~l~~ 537 (1026)
|+|.|.+... ....|.|+|||++..+.+++||.|.+....
T Consensus 352 esf~F~vp~~~l~~~~l~l~V~d~d~~~~~~~iG~~~lG~~~ 393 (421)
T KOG1028|consen 352 ETFVFDVPPEQLAEVSLELTVWDHDTLGSNDLIGRCILGSDS 393 (421)
T ss_pred ccEEEeCCHHHhheeEEEEEEEEcccccccceeeEEEecCCC
Confidence 9999987643 456899999999999999999999998774
No 4
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=99.95 E-value=6.7e-26 Score=265.92 Aligned_cols=396 Identities=20% Similarity=0.246 Sum_probs=301.3
Q ss_pred cceeEEEEEEEEeecCCCCC--CCCCCCcEEEEEECCe-eeEeeeecCCCCCeEeEEEEEEecCCCCCeEEEEEEeCCCC
Q 001696 282 EQMSYLYVRVVKAKDLPPSS--ITGSCDPYVEVKMGNY-KGRTKHFEKRMNPEWNQVFAFSKERIQSSMLEVFLKDKEMV 358 (1026)
Q Consensus 282 ~~~~~L~V~v~~a~~L~~~d--~~g~~dpyv~v~~~~~-~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~v~V~d~~~~ 358 (1026)
...|+|.|+|.+|++|...+ .++..|||+.+.+.+. ..||++++++.||+|||+|++.+... ++.|.++|||.+.+
T Consensus 433 ~aIGVv~vkI~sa~~lk~~d~~i~~~vDpyit~~~~~r~~gkT~v~~nt~nPvwNEt~Yi~lns~-~d~L~LslyD~n~~ 511 (1227)
T COG5038 433 TAIGVVEVKIKSAEGLKKSDSTINGTVDPYITVTFSDRVIGKTRVKKNTLNPVWNETFYILLNSF-TDPLNLSLYDFNSF 511 (1227)
T ss_pred CeeEEEEEEEeeccCcccccccccCCCCceEEEEeccccCCccceeeccCCccccceEEEEeccc-CCceeEEEEecccc
Confidence 36799999999999999887 6789999999998764 67999999999999999999999766 57999999999999
Q ss_pred CCCceeEEEEEEccccCCCCCCCCCCCCEEEEeecCCCCCcccceEEEEEEecccCchhhhhcccccCccccCCCccccc
Q 001696 359 GRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLEDRRGEGKVRGQTMLAIWMGTQADEAFAEAWHSDASSVYGEGVFNIR 438 (1026)
Q Consensus 359 ~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~~r 438 (1026)
.+|+++|.+.++|..+.......+ .-+.+.. ..+..|+|...+.|.+........ ....+.
T Consensus 512 ~sd~vvG~~~l~L~~L~~~~~~~n----e~~e~~~---~~k~vGrL~yDl~ffp~~e~k~~~-------~~s~e~----- 572 (1227)
T COG5038 512 KSDKVVGSTQLDLALLHQNPVKKN----ELYEFLR---NTKNVGRLTYDLRFFPVIEDKKEL-------KGSVEP----- 572 (1227)
T ss_pred CCcceeeeEEechHHhhhcccccc----ceeeeec---cCccceEEEEeeeeecccCCcccc-------ccccCC-----
Confidence 999999999999999987765442 2333332 235689999999777654321110 000000
Q ss_pred cccccCCceEEEEEEEEEeEecCCCCCCCCCCcEEEEEECC-eEEEeeeecCCCCCCcccceeEEEeeCCCcCeEEEEEE
Q 001696 439 SKVYVSPKLWYLRVNVIEAQDIVPNDRNRLPEGFVKVQVGN-QVLKTKICPTPTTNPLWNEDLVFVAAEPFEEQLFLTVE 517 (1026)
Q Consensus 439 ~~~~~~p~~~~l~V~I~~a~~L~~~d~~~~~dpyV~v~lg~-~~~kT~~~~~~t~nP~wne~f~f~v~~~~~~~L~i~V~ 517 (1026)
..+...|.+.+++.++++|..... ....-++++++.. +.+-|+.. +.+.+|.||+.+.-.+.+.....+.+.++
T Consensus 573 ---~ed~n~GI~k~tl~~~~~l~~~~~-~~~~~~a~l~~~~keV~st~~~-k~t~~~~wn~~~~~~v~~~~ns~~~~~~~ 647 (1227)
T COG5038 573 ---LEDSNTGILKVTLREVKALDELSS-KKDNKSAELYTNAKEVYSTGKL-KFTNHPSWNLQYNVLVTDRKNSSIKVVTF 647 (1227)
T ss_pred ---cccCCcceeEEEeeccccccCccc-cccceeEEEEecceEEecccee-eeccCCceeeecceEeccCcceeEEEEec
Confidence 012235789999999999975332 2223348888865 45666777 79999999999999999988889999999
Q ss_pred EccCCCCCceeEEEEEeCcccccccCCCCccceeEEcccCCCCchhhhhhccccccceEEEEEEecCCccccCCcccccC
Q 001696 518 DRVHASKDEVLGKISLPLHIFEKRLDHRPVHSRWFNLEKFGFGAIEADRRKELKFSSRVHLRVCLEGGYHVLDESTMYIS 597 (1026)
Q Consensus 518 d~d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~~~~~~~~~~~~~~~~~~~g~l~l~~~~~~~~~~~~~~~~~~~ 597 (1026)
|.. ..+.||....+|.++... ......||++..+ .|+|.+..++.+-|......
T Consensus 648 d~~---~g~~i~~~~~~l~~li~~---t~dt~~~f~~~~~---------------kg~I~~t~~W~Pi~~~~~~~----- 701 (1227)
T COG5038 648 DVQ---SGKVIATEGSTLPDLIDR---TLDTFLVFPLRNP---------------KGRIFITNYWKPIYNAGGSS----- 701 (1227)
T ss_pred ccc---cCceeccccccchHhhhc---cccceEEEEcCCC---------------cceEEEEeccceeecccccc-----
Confidence 873 567899999999887754 3446789999865 48898888766544211101
Q ss_pred CccccccccCCCCceEEEEEEEEecCCCCCccCCCCCCcCcEEEEEECC-EEEEeeeecCCCCceeecEEEEEeeCCCCE
Q 001696 598 DQRPTAKQLWKPPVGILEVGILGAQGLLPMKMKDGRGSTDAYCIAKYGQ-KWVRTRTILDTFNPKWNEQYTWEVYDPCTV 676 (1026)
Q Consensus 598 d~~~~~~~~~~~~~g~L~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~g~-~~~~T~~~~~t~~P~wne~~~~~v~~~~~~ 676 (1026)
+...+..++|.++|.|..|.+|... ...+++|||+++.+++ .++||-....++||.||+....+|..+.+.
T Consensus 702 -----s~~~~~~pIg~irv~v~~andl~n~---i~g~~~dPya~v~~n~~~k~rti~~~~~~npiw~~i~Yv~v~sk~~r 773 (1227)
T COG5038 702 -----SKTVYDTPIGAIRVSVRKANDLRNE---IPGGKSDPYATVLVNNLVKYRTIYGSSTLNPIWNEILYVPVTSKNQR 773 (1227)
T ss_pred -----ceeeecCccceEEEEeehhhccccc---ccCcccccceEEEecceeEEEEecccCccccceeeeEEEEecCCccE
Confidence 1112346789999999999999864 6788999999999975 469999999999999999999999999999
Q ss_pred EEEEEEeCCCCCCCCccCCCCCCCCCeeEEEEEEcccccC----CceE------eeeEeeeecCCCCCccCcEEEEEEEE
Q 001696 677 ITLGVFDNCHLGGGEKQNGSSAVRDSRIGKVRIRLSTLEA----HRIY------THSYPLLVLHPHGVKKMGELQLAIRF 746 (1026)
Q Consensus 677 l~i~v~d~~~~~~~~~~~~~~~~~~~~lG~~~i~l~~l~~----~~~~------~~~~~L~~~~~~g~~~~G~i~l~~~f 746 (1026)
|.++++|....+ .|..||.+.|+++++.. +..+ ...-+|. ..|.+..|+|++..+|
T Consensus 774 ~~l~~~~~~~sg-----------ddr~lg~~~i~vsn~~~k~~~s~~~~~i~g~~~t~~l~---~~~~~~~~tit~~~~f 839 (1227)
T COG5038 774 LTLECMDYEESG-----------DDRNLGEVNINVSNVSKKDEDSALMETIDGAEETGKLS---LTGKKVKGTITYKCRF 839 (1227)
T ss_pred Eeeeeecchhcc-----------ccceeceeeeeeeeeeecCCCcceEEeecCcccccccc---cccCCcceeEEEEEEE
Confidence 999999999865 89999999999999865 2111 0111111 1233447999999998
Q ss_pred eecc
Q 001696 747 TIFS 750 (1026)
Q Consensus 747 ~~~~ 750 (1026)
-|..
T Consensus 840 ~p~~ 843 (1227)
T COG5038 840 YPAV 843 (1227)
T ss_pred Eeec
Confidence 7643
No 5
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=99.95 E-value=4.5e-27 Score=270.03 Aligned_cols=614 Identities=18% Similarity=0.225 Sum_probs=360.1
Q ss_pred eEEEEeecCCCccCCCCCCCCCEEEEEeCCceeeeccCCCCCCcccceeEEEeccCC----C--CCccceEEEEEeeCCC
Q 001696 3 LVVEVVDAYDLMPKDGEGSASPFAEVDFLNQLSKTKTIPKNLNPVWNQKLLFDFDQT----K--SHNHLRIEVSIYHHER 76 (1026)
Q Consensus 3 L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~T~~~~~t~nP~Wne~f~f~~~~~----~--~~~~~~L~~~V~d~d~ 76 (1026)
|++.|.+|+.|...+..+.+|||+.|.+-++.+.|-++.+|+||.|+++..|.-... . ..+-..+.|+|||.|+
T Consensus 208 lR~yiyQar~L~a~dk~~~sdp~a~v~f~~qs~~T~~v~~tl~ptwdq~~~f~~~ei~ge~~~~~~~ppi~v~e~yd~dr 287 (1105)
T KOG1326|consen 208 LRSYIYQARALGAPDKDDESDPDAAVEFCGQSKETEVVPGTLNPTWDQTIIFDEVEIYGEAHLVLKNPPIRVFEVYDLDR 287 (1105)
T ss_pred hHHHHHHHHhhcCCCcccCCCchhhhhcccccceeEeecCcCCCCccceeeccceeecCccchhhcCCCeEEEEeehhhh
Confidence 456788899999999999999999999999999999999999999999999972210 0 0011368999999666
Q ss_pred CCCCCCccceeEEecCccccccCCceeEEeeccccccccccccccceeEEecCCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q 001696 77 RPIPGRHFLGRVRIPCSNLVRKGEEVYQRFPLEKKWFLSSVKGEVGLKIYISPQSETTQPPTSSLPKPKSPKNTTNLDSK 156 (1026)
Q Consensus 77 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (1026)
. +.++|+|+......-... .....|+++...+ ...|++.+....+....+.. .+.+.
T Consensus 288 ~--g~~ef~gr~~~~p~V~~~--~p~lkw~p~~rg~---~l~gd~l~a~eliq~~~~i~-----~p~~~----------- 344 (1105)
T KOG1326|consen 288 S--GINEFKGRKKQRPYVMVQ--CPALKWVPTMRGA---FLDGDVLIAAELIQIGKPIP-----QPPPQ----------- 344 (1105)
T ss_pred h--chHHhhcccccceEEEec--CCccceEEeeccc---ccccchhHHHHHHhhcCCCC-----CCCcc-----------
Confidence 4 489999998766443222 2367788887643 34566665544332222100 00000
Q ss_pred ccCCCcchhhccccCCCCCCCccccccccccccccCCcCCCCcchhhhcccccccCCCCCCCCCCCCCCccccccCcCCC
Q 001696 157 TFTALPKVEELAAVDAPKSLPEEEISRISLKEDIKEPAKVTVEPIQEFLKQQVVLQPGQSVEKQPQGVPFTMHSMNLQQG 236 (1026)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (1026)
++. ..++..
T Consensus 345 ---------------------------------------------------------------~~~--~~~~vp------ 353 (1105)
T KOG1326|consen 345 ---------------------------------------------------------------REI--IFSLVP------ 353 (1105)
T ss_pred ---------------------------------------------------------------ccc--ceeccc------
Confidence 000 000000
Q ss_pred CCCCcccCcccCCCCCCCCCCCCCCCCCCCcccccceeEeeeccccceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC
Q 001696 237 RPGDQEEYNLKDTNPQLGERWPNGGGYGGRGWMSGERFTSTYDLVEQMSYLYVRVVKAKDLPPSSITGSCDPYVEVKMGN 316 (1026)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~y~~~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~ 316 (1026)
. +++ .+.+.+.++|-...-+|+..........|-+.+.+++
T Consensus 354 ------------------~----~iR-----------------p~~q~~~~evl~wgLrn~k~~~m~~~~~P~~~~e~g~ 394 (1105)
T KOG1326|consen 354 ------------------K----KIR-----------------PKTQIGKAELLMWGLRNPKKSGMASTFSPALLVEFGG 394 (1105)
T ss_pred ------------------c----CCC-----------------cceeeeeeehhhhhhcccccccccccCCcceeEeeCC
Confidence 0 000 0013345555555556666656666788999999999
Q ss_pred eeeEeeeecC-CCCCeEeEEEEEEe-----cCCCCCeEEEEEEeCCCCCCCceeEEEEEEc-cccCCCCCCCCCCCC---
Q 001696 317 YKGRTKHFEK-RMNPEWNQVFAFSK-----ERIQSSMLEVFLKDKEMVGRDDYLGRVAFDL-NEVPTRVPPDSPLAP--- 386 (1026)
Q Consensus 317 ~~~kT~~~~~-t~nP~wne~f~f~v-----~~~~~~~L~v~V~d~~~~~~d~~lG~~~i~l-~~l~~~~~~~~~~~~--- 386 (1026)
+..++..+.+ ..||.++..|.+.. ....-..+.++|.|.+.++.-..+|+|.+.- .+..-.........+
T Consensus 395 e~v~s~~I~~~k~npnf~s~~~~~~v~lpd~e~Y~ppl~akvvd~~~fg~~~v~g~c~i~~l~nf~c~p~~~~~~~Pq~~ 474 (1105)
T KOG1326|consen 395 ERVSSFSIFNRKKNPNFPSRVLGRLVILPDEELYMPPLNAKVVDLRQFGRMEVVGQCKILSLYNFFCDPSAVNSITPQFA 474 (1105)
T ss_pred ceEeeeeehhhhhCCCCceeEEEEEEeccchHhhCccceeEEEecccccceeehhhhcchhhhhhccCchhhcccCcCCC
Confidence 9888777765 67899987766542 2233578999999999999999999998853 222211110000000
Q ss_pred --------------------EEEE-----------------eecCCCCC------cccceEEEEEEecccCc-hhhh--h
Q 001696 387 --------------------QWYR-----------------LEDRRGEG------KVRGQTMLAIWMGTQAD-EAFA--E 420 (1026)
Q Consensus 387 --------------------~w~~-----------------L~~~~~~~------~~~G~i~l~~~~~~~~d-~~~~--~ 420 (1026)
.|++ +....... ..++...+.++....+. +.+. .
T Consensus 475 ~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~e~~~~~w~k~~~~~~~~~k~~~~~~K~~~~LKiyn~ele~v~ef~~l~ 554 (1105)
T KOG1326|consen 475 SDPVSIMMGSTDNEIRHCNSSTLPASPHEDEEEREVDWWGKFYPSAEENAKWEVYEHKINVTLKIYNMELEMVAEFRGLQ 554 (1105)
T ss_pred CCchhhhcCCchhhhhhccccCCCCCccccccceehhhhhhccccccccccccccccccceEEEEehhhhhhHHHHhhhh
Confidence 0111 11100000 01111222222111110 0010 1
Q ss_pred cccccC----------c-ccc------------CCC------ccccc-cc-cccCCceEEEEEEEEEeEecCCCCCCCCC
Q 001696 421 AWHSDA----------S-SVY------------GEG------VFNIR-SK-VYVSPKLWYLRVNVIEAQDIVPNDRNRLP 469 (1026)
Q Consensus 421 ~~~~d~----------~-~~~------------~~~------~~~~r-~~-~~~~p~~~~l~V~I~~a~~L~~~d~~~~~ 469 (1026)
.|..+- . +.. +.+ ..... .. ....|....++|+|++|-+|.+.|.+|.+
T Consensus 555 D~~~~f~l~rG~~~~e~~e~~Ivg~fKgl~rIyp~~~~~~~p~~pr~~~~~~~~~pi~~LvrVyvv~A~~L~p~D~ng~a 634 (1105)
T KOG1326|consen 555 DWAVTFKLYRGKEGLECLEQQIVGEFKGLFRIYPVPRNPSSPAPPRHFLDLPKEEPIKCLVRVYVVEAFSLQPSDGNGDA 634 (1105)
T ss_pred hccceeEeeeccccCCCcccchhhhhhcceeeecCCCccCCCCChhhhhcccccCcceeeEEEEEEEeeeccccCCCCCc
Confidence 121100 0 000 000 00000 00 01136677899999999999999999999
Q ss_pred CcEEEEEECCeEE--EeeeecCCCCCCcccceeEEEeeCCCcCeEEEEEEEccCCCCCceeEEEEEeCcc-cccccCCCC
Q 001696 470 EGFVKVQVGNQVL--KTKICPTPTTNPLWNEDLVFVAAEPFEEQLFLTVEDRVHASKDEVLGKISLPLHI-FEKRLDHRP 546 (1026)
Q Consensus 470 dpyV~v~lg~~~~--kT~~~~~~t~nP~wne~f~f~v~~~~~~~L~i~V~d~d~~~~d~~lG~~~i~l~~-l~~~~~~~~ 546 (1026)
||||++.+|++.. +...+ .+|+||+|++.|++....+....+.++|||+|..+.|+.||+..|+|.. .....+.++
T Consensus 635 dpYv~l~lGk~~~~d~~~yi-p~tlnPVfgkmfel~~~lp~ek~l~v~vyd~D~~~~d~~iget~iDLEnR~~T~~~a~c 713 (1105)
T KOG1326|consen 635 DPYVKLLLGKKRTLDRAHYI-PNTLNPVFGKMFELECLLPFEKDLIVEVYDHDLEAQDEKIGETTIDLENRWLTRHRARC 713 (1105)
T ss_pred CceeeeeeccchhhhhhhcC-cCCCCcHHHHHHHhhcccchhhcceeEEEEeecccccchhhceehhhhhcccCcCCccc
Confidence 9999999999864 55566 6999999999999999999999999999999999999999999999986 333334455
Q ss_pred ccceeEEcccCCCCc--hhh--------hh-hccccc-cceEEEEEEecCCc----------------------------
Q 001696 547 VHSRWFNLEKFGFGA--IEA--------DR-RKELKF-SSRVHLRVCLEGGY---------------------------- 586 (1026)
Q Consensus 547 ~~~~w~~L~~~~~~~--~~~--------~~-~~~~~~-~g~l~l~~~~~~~~---------------------------- 586 (1026)
...+-|...+...-- +.- .. +..... .+.+ ..+.+.+..
T Consensus 714 glaq~y~v~g~n~W~d~~~ps~iL~~~~Q~~~i~~P~~~~e~-~~i~~~g~~~~~d~~~~k~~~~~~L~~~~~r~~~~i~ 792 (1105)
T KOG1326|consen 714 GLAQTYCVSGANIWRDRMDPSQILKEHCQPGGIPRPYYSYEV-SAIKWKGESDIYDEKEAKTIEVPHLGNAWERLALWIL 792 (1105)
T ss_pred CccceeeeeccccccCccCHHHHHHHhhcccCCCCCeecCCc-ceEEecChhhhhcccccCCCCCcccchHHHHHHHHhh
Confidence 555555555443100 000 00 000000 0000 011111100
Q ss_pred ---cccC---CcccccCCcccc----ccccC------------------CCCceEEEEEEEEecCCCCCccCCCCC--Cc
Q 001696 587 ---HVLD---ESTMYISDQRPT----AKQLW------------------KPPVGILEVGILGAQGLLPMKMKDGRG--ST 636 (1026)
Q Consensus 587 ---~~~~---~~~~~~~d~~~~----~~~~~------------------~~~~g~L~v~v~~a~~L~~~~~~~~~~--~~ 636 (1026)
+... +.....++..|. ..++| ++..--|+|.|-.-.+...-+. ++.| .+
T Consensus 793 ~~~~lvpehvetrtl~~~~~p~ieqgklq~Wvd~fp~d~~~ppl~itpr~~~~~~lrviiWnt~~v~l~dd-~~~ge~~s 871 (1105)
T KOG1326|consen 793 MNQGLVPEHVETRTLHSKAFPNIEQGKLQMWVDFFPKDLYAPPLNITPRKPKKYELRVIIWNTDKVRLNDD-EITGEKMS 871 (1105)
T ss_pred hhcCcCCcccccccccCccccchhhcccchhhhhcccccCCCCCCCCCCChhheeEEEEEeeccceeecCc-cceeeecc
Confidence 0000 000000111111 11111 1223457887776666655332 3333 68
Q ss_pred CcEEEEEE-C--CEEEEeeeecCCC----CceeecEEEEEe------------------e----CCCCEEEEEEEeCCCC
Q 001696 637 DAYCIAKY-G--QKWVRTRTILDTF----NPKWNEQYTWEV------------------Y----DPCTVITLGVFDNCHL 687 (1026)
Q Consensus 637 dpyv~v~~-g--~~~~~T~~~~~t~----~P~wne~~~~~v------------------~----~~~~~l~i~v~d~~~~ 687 (1026)
|.||+--+ | .++++|.+.++++ |-.|.-.|.|.- . .....|.|+|||+|.+
T Consensus 872 dIyv~gw~~gdee~kq~tdvhyrsl~ge~~fnwr~~f~~Dyl~ae~~~vi~kke~~ws~dete~k~p~rl~iqiWD~d~f 951 (1105)
T KOG1326|consen 872 DIYVKGWVLGDEEEKQKTDVHYRSLTGEGNFNWRFVFPFDYLPAEQLCVIAKKEYSWSLDETEFKIPARLIIQIWDNDKF 951 (1105)
T ss_pred ceEEecccccchhhhcccceeeeeccCCcccceeeecccccchHhhHhhhhhhhhccccccccccCchheEEEecccCcc
Confidence 99999866 3 4568999988765 666754443311 0 0123599999999998
Q ss_pred CCCCccCCCCCCCCCeeEEEEEEcccccCC----------------------ceEeeeEeeeecCCCCCccCcEEEEEEE
Q 001696 688 GGGEKQNGSSAVRDSRIGKVRIRLSTLEAH----------------------RIYTHSYPLLVLHPHGVKKMGELQLAIR 745 (1026)
Q Consensus 688 ~~~~~~~~~~~~~~~~lG~~~i~l~~l~~~----------------------~~~~~~~~L~~~~~~g~~~~G~i~l~~~ 745 (1026)
+ +|++||...++|+++..+ +.+..|||+.........-+|.|++.+.
T Consensus 952 s-----------~Dd~Lg~lELdL~~~~~pa~sa~~c~~~~~~~~~vslFe~k~v~GWwP~~a~~~~~~~l~Gkvem~le 1020 (1105)
T KOG1326|consen 952 S-----------KDDFLGALELDLSDMPAPAKSAKKCSLYMKKDKTVSLFEQKTVKGWWPCQAEEGDAKVLAGKVEMSLE 1020 (1105)
T ss_pred C-----------hhhhhhheeechhhCcCCCCCHHHCCceeccCcceehhhcccccccceeeecCCCcceecceeeeehh
Confidence 6 899999999999997432 2467899999763322223899988774
Q ss_pred EeecchhHhHhhhCCCCCCccccCCCCchhhHH
Q 001696 746 FTIFSLASMIYVYGHPLLPKMHYLHPFTVNQVD 778 (1026)
Q Consensus 746 f~~~~~~~~~~~y~~~~~p~~~~~~p~~~~~~~ 778 (1026)
.+...++...|.|+++.+
T Consensus 1021 ---------------ilt~~EA~~~PAG~gr~e 1038 (1105)
T KOG1326|consen 1021 ---------------ILTEKEADERPAGKGRDE 1038 (1105)
T ss_pred ---------------hhhhhhhhhCccccCCCC
Confidence 234556677888876444
No 6
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=3.7e-25 Score=250.73 Aligned_cols=213 Identities=27% Similarity=0.405 Sum_probs=178.7
Q ss_pred EEEEEEEEeEecCCCCCCCCCCcEEEEEEC---CeEEEeeeecCCCCCCcccceeEEEeeCC--CcCeEEEEEEEccCCC
Q 001696 449 YLRVNVIEAQDIVPNDRNRLPEGFVKVQVG---NQVLKTKICPTPTTNPLWNEDLVFVAAEP--FEEQLFLTVEDRVHAS 523 (1026)
Q Consensus 449 ~l~V~I~~a~~L~~~d~~~~~dpyV~v~lg---~~~~kT~~~~~~t~nP~wne~f~f~v~~~--~~~~L~i~V~d~d~~~ 523 (1026)
.|.|+|++|++|+.++..+.+||||++++. ..+.+|++. ++++||.|||+|.|.+... ....|.++|||.|.++
T Consensus 168 ~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~-r~tlnP~fnEtf~f~v~~~~l~~~~L~l~V~~~drfs 246 (421)
T KOG1028|consen 168 LLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVH-RKTLNPVFNETFRFEVPYEELSNRVLHLSVYDFDRFS 246 (421)
T ss_pred EEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeee-ecCcCCccccceEeecCHHHhccCEEEEEEEecCCcc
Confidence 699999999999999977789999999993 357899999 7999999999999996433 6679999999999999
Q ss_pred CCceeEEEEEeCcccccccCCCCccceeEEcccCCCCchhhhhhccccccceEEEEEEecCCccccCCcccccCCccccc
Q 001696 524 KDEVLGKISLPLHIFEKRLDHRPVHSRWFNLEKFGFGAIEADRRKELKFSSRVHLRVCLEGGYHVLDESTMYISDQRPTA 603 (1026)
Q Consensus 524 ~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~~~~~~~~~~~~~~~~~~~g~l~l~~~~~~~~~~~~~~~~~~~d~~~~~ 603 (1026)
++++||++.++|..+... .....|.++....... ....|+|.+++++.+
T Consensus 247 r~~~iGev~~~l~~~~~~----~~~~~w~~l~~~~~~~--------~~~~gel~~sL~Y~p------------------- 295 (421)
T KOG1028|consen 247 RHDFIGEVILPLGEVDLL----STTLFWKDLQPSSTDS--------EELAGELLLSLCYLP------------------- 295 (421)
T ss_pred cccEEEEEEecCcccccc----ccceeeeccccccCCc--------ccccceEEEEEEeec-------------------
Confidence 999999999999887643 2257799998874321 112289999998533
Q ss_pred cccCCCCceEEEEEEEEecCCCCCccCCCCCCcCcEEEEEE--CC---EEEEeeeecCCCCceeecEEEEEeeCC---CC
Q 001696 604 KQLWKPPVGILEVGILGAQGLLPMKMKDGRGSTDAYCIAKY--GQ---KWVRTRTILDTFNPKWNEQYTWEVYDP---CT 675 (1026)
Q Consensus 604 ~~~~~~~~g~L~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~--g~---~~~~T~~~~~t~~P~wne~~~~~v~~~---~~ 675 (1026)
.-|.|+|.|++|++|..+ +..+.+||||++.+ +. .+.+|.+++++.||+|||+|.|.|... ..
T Consensus 296 ------~~g~ltv~v~kar~L~~~---~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~~~npv~nesf~F~vp~~~l~~~ 366 (421)
T KOG1028|consen 296 ------TAGRLTVVVIKARNLKSM---DVGGLSDPYVKVTLLDGDKRLSKKKTSVKKKTLNPVFNETFVFDVPPEQLAEV 366 (421)
T ss_pred ------CCCeEEEEEEEecCCCcc---cCCCCCCccEEEEEecCCceeeeeeeecccCCCCCcccccEEEeCCHHHhhee
Confidence 348999999999999998 77889999999977 33 358999999999999999999988742 44
Q ss_pred EEEEEEEeCCCCCCCCccCCCCCCCCCeeEEEEEEccc
Q 001696 676 VITLGVFDNCHLGGGEKQNGSSAVRDSRIGKVRIRLST 713 (1026)
Q Consensus 676 ~l~i~v~d~~~~~~~~~~~~~~~~~~~~lG~~~i~l~~ 713 (1026)
.|.|+|||++.++ .+++||++.+....
T Consensus 367 ~l~l~V~d~d~~~-----------~~~~iG~~~lG~~~ 393 (421)
T KOG1028|consen 367 SLELTVWDHDTLG-----------SNDLIGRCILGSDS 393 (421)
T ss_pred EEEEEEEEccccc-----------ccceeeEEEecCCC
Confidence 6999999999986 67799998888775
No 7
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=99.88 E-value=1.9e-22 Score=224.67 Aligned_cols=245 Identities=23% Similarity=0.364 Sum_probs=196.7
Q ss_pred ceEEEEeecCCCccCCCCCCCCCEEEEEeCC-ceeeeccCCCCCCcccceeEEEeccCCCCCccceEEEEEeeCCCCCCC
Q 001696 2 KLVVEVVDAYDLMPKDGEGSASPFAEVDFLN-QLSKTKTIPKNLNPVWNQKLLFDFDQTKSHNHLRIEVSIYHHERRPIP 80 (1026)
Q Consensus 2 ~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~-~~~~T~~~~~t~nP~Wne~f~f~~~~~~~~~~~~L~~~V~d~d~~~~~ 80 (1026)
.|.|+|.+|+||++.+..|..||||.|.++. ...+|.++.+|+.|.|.|.|+|.+...- ..|.|.|||.| .+
T Consensus 6 sl~vki~E~knL~~~~~~g~~D~yC~v~lD~E~v~RT~tv~ksL~PF~gEe~~~~iP~~F----~~l~fYv~D~d---~~ 78 (800)
T KOG2059|consen 6 SLKVKIGEAKNLPSYGPSGMRDCYCTVNLDQEEVCRTATVEKSLCPFFGEEFYFEIPRTF----RYLSFYVWDRD---LK 78 (800)
T ss_pred ceeEEEeecccCCCCCCCCCcCcceEEeecchhhhhhhhhhhhcCCccccceEEecCcce----eeEEEEEeccc---cc
Confidence 4889999999999999999999999999976 6889999999999999999999998765 58999999933 46
Q ss_pred CCccceeEEecCccccccCCceeEEeeccccccccccccccceeEEecCCCCCCCCCCCCCCCCCCCCCCCCCCCcccCC
Q 001696 81 GRHFLGRVRIPCSNLVRKGEEVYQRFPLEKKWFLSSVKGEVGLKIYISPQSETTQPPTSSLPKPKSPKNTTNLDSKTFTA 160 (1026)
Q Consensus 81 ~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (1026)
+|+.||++.|.-+++...+ ..+.|+.|++.+..+.++|+|++++.+.+.....
T Consensus 79 ~D~~IGKvai~re~l~~~~-~~d~W~~L~~VD~dsEVQG~v~l~l~~~e~~~~~-------------------------- 131 (800)
T KOG2059|consen 79 RDDIIGKVAIKREDLHMYP-GKDTWFSLQPVDPDSEVQGKVHLELALTEAIQSS-------------------------- 131 (800)
T ss_pred cccccceeeeeHHHHhhCC-CCccceeccccCCChhhceeEEEEEEeccccCCC--------------------------
Confidence 9999999999999988776 4889999999999999999999998775432210
Q ss_pred CcchhhccccCCCCCCCccccccccccccccCCcCCCCcchhhhcccccccCCCCCCCCCCCCCCccccccCcCCCCCCC
Q 001696 161 LPKVEELAAVDAPKSLPEEEISRISLKEDIKEPAKVTVEPIQEFLKQQVVLQPGQSVEKQPQGVPFTMHSMNLQQGRPGD 240 (1026)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (1026)
T Consensus 132 -------------------------------------------------------------------------------- 131 (800)
T KOG2059|consen 132 -------------------------------------------------------------------------------- 131 (800)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCcccCCCCCCCCCCCCCCCCCCCcccccceeEeeeccccceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe---
Q 001696 241 QEEYNLKDTNPQLGERWPNGGGYGGRGWMSGERFTSTYDLVEQMSYLYVRVVKAKDLPPSSITGSCDPYVEVKMGNY--- 317 (1026)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~y~~~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~--- 317 (1026)
.+..++++++++.+.. ++.+|||+++...+.
T Consensus 132 ---------------------------------------------~~~c~~L~~r~~~P~~-~~~~dp~~~v~~~g~~~~ 165 (800)
T KOG2059|consen 132 ---------------------------------------------GLVCHVLKTRQGLPII-NGQCDPFARVTLCGPSKL 165 (800)
T ss_pred ---------------------------------------------cchhhhhhhcccCcee-CCCCCcceEEeecccchh
Confidence 0112223334554544 345999999998764
Q ss_pred -eeEeeeecCCCCCeEeEEEEEEecCC---------------CCCeEEEEEEe-CCCCCCCceeEEEEEEccccCCCCCC
Q 001696 318 -KGRTKHFEKRMNPEWNQVFAFSKERI---------------QSSMLEVFLKD-KEMVGRDDYLGRVAFDLNEVPTRVPP 380 (1026)
Q Consensus 318 -~~kT~~~~~t~nP~wne~f~f~v~~~---------------~~~~L~v~V~d-~~~~~~d~~lG~~~i~l~~l~~~~~~ 380 (1026)
..+|+++++|.+|.|+|.|.|.+... ....|.+++|+ .+.+..+.|+|++.+++..+.....+
T Consensus 166 ~~~~T~~~kkt~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~e~~~l~irv~lW~~~~~~~~~~FlGevrv~v~~~~~~s~p 245 (800)
T KOG2059|consen 166 KEKKTKVKKKTTNPQFDEVFYFEVTREESYSKKSLFMPEEEDDMLEIRVDLWNDLNLVINDVFLGEVRVPVDVLRQKSSP 245 (800)
T ss_pred hccccceeeeccCcchhhheeeeeccccccccchhcCcccCCceeeEEEeeccchhhhhhhhhceeEEeehhhhhhccCc
Confidence 35999999999999999999987543 23578899998 56666799999999999988855444
Q ss_pred CCCCCCEEEEeecCCCCC-----cccceEEEEEEec
Q 001696 381 DSPLAPQWYRLEDRRGEG-----KVRGQTMLAIWMG 411 (1026)
Q Consensus 381 ~~~~~~~w~~L~~~~~~~-----~~~G~i~l~~~~~ 411 (1026)
. .||.|.....++ ...|.+++.+.|.
T Consensus 246 ~-----~W~~Lqp~~~g~~~~~~~~lGslrl~v~y~ 276 (800)
T KOG2059|consen 246 A-----AWYYLQPRPNGEKSSDGGDLGSLRLNVTYT 276 (800)
T ss_pred c-----ceEEEecCCCcccCCCCCCccceeeeEEee
Confidence 4 899998875432 2568888888775
No 8
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=99.87 E-value=1.7e-21 Score=217.09 Aligned_cols=252 Identities=22% Similarity=0.340 Sum_probs=201.9
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-eeEeeeecCCCCCeEeEEEEEEecCCCCCeEEEEEEeCCCCCCCce
Q 001696 285 SYLYVRVVKAKDLPPSSITGSCDPYVEVKMGNY-KGRTKHFEKRMNPEWNQVFAFSKERIQSSMLEVFLKDKEMVGRDDY 363 (1026)
Q Consensus 285 ~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~-~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~v~V~d~~~~~~d~~ 363 (1026)
..|.|+|.+|+||++.+..|..||||.|.++++ .+||.++.+++.|.|.|+|+|.+.... ..|.|-|||.| +++|+.
T Consensus 5 ~sl~vki~E~knL~~~~~~g~~D~yC~v~lD~E~v~RT~tv~ksL~PF~gEe~~~~iP~~F-~~l~fYv~D~d-~~~D~~ 82 (800)
T KOG2059|consen 5 QSLKVKIGEAKNLPSYGPSGMRDCYCTVNLDQEEVCRTATVEKSLCPFFGEEFYFEIPRTF-RYLSFYVWDRD-LKRDDI 82 (800)
T ss_pred cceeEEEeecccCCCCCCCCCcCcceEEeecchhhhhhhhhhhhcCCccccceEEecCcce-eeEEEEEeccc-cccccc
Confidence 358999999999999999999999999999985 789999999999999999999986543 68999999999 889999
Q ss_pred eEEEEEEccccCCCCCCCCCCCCEEEEeecCCCCCcccceEEEEEEecccCchhhhhcccccCccccCCCcccccccccc
Q 001696 364 LGRVAFDLNEVPTRVPPDSPLAPQWYRLEDRRGEGKVRGQTMLAIWMGTQADEAFAEAWHSDASSVYGEGVFNIRSKVYV 443 (1026)
Q Consensus 364 lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~~r~~~~~ 443 (1026)
||.+.|.-.+|......+ .|+.|......+.+.|+|++.+.+.....+
T Consensus 83 IGKvai~re~l~~~~~~d-----~W~~L~~VD~dsEVQG~v~l~l~~~e~~~~--------------------------- 130 (800)
T KOG2059|consen 83 IGKVAIKREDLHMYPGKD-----TWFSLQPVDPDSEVQGKVHLELALTEAIQS--------------------------- 130 (800)
T ss_pred cceeeeeHHHHhhCCCCc-----cceeccccCCChhhceeEEEEEEeccccCC---------------------------
Confidence 999999988887766555 999999998888899999999877543221
Q ss_pred CCceEEEEEEEEEeEecCCCCCCCCCCcEEEEEECCe----EEEeeeecCCCCCCcccceeEEEeeCC------------
Q 001696 444 SPKLWYLRVNVIEAQDIVPNDRNRLPEGFVKVQVGNQ----VLKTKICPTPTTNPLWNEDLVFVAAEP------------ 507 (1026)
Q Consensus 444 ~p~~~~l~V~I~~a~~L~~~d~~~~~dpyV~v~lg~~----~~kT~~~~~~t~nP~wne~f~f~v~~~------------ 507 (1026)
..+...+++++++.+.. ++.+|||++|...+. ..+|++. ++|.+|.|+|.|+|.+...
T Consensus 131 ----~~~~c~~L~~r~~~P~~-~~~~dp~~~v~~~g~~~~~~~~T~~~-kkt~~p~~~Ev~~f~~~~~~~~s~ks~~~~~ 204 (800)
T KOG2059|consen 131 ----SGLVCHVLKTRQGLPII-NGQCDPFARVTLCGPSKLKEKKTKVK-KKTTNPQFDEVFYFEVTREESYSKKSLFMPE 204 (800)
T ss_pred ----CcchhhhhhhcccCcee-CCCCCcceEEeecccchhhcccccee-eeccCcchhhheeeeeccccccccchhcCcc
Confidence 12556666777776655 445999999999553 4599999 7999999999999998654
Q ss_pred ---CcCeEEEEEEE-ccCCCCCceeEEEEEeCcccccccCCCCccceeEEcccCCCCchhhhhhccccccceEEEEEEec
Q 001696 508 ---FEEQLFLTVED-RVHASKDEVLGKISLPLHIFEKRLDHRPVHSRWFNLEKFGFGAIEADRRKELKFSSRVHLRVCLE 583 (1026)
Q Consensus 508 ---~~~~L~i~V~d-~d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~~~~~~~~~~~~~~~~~~~g~l~l~~~~~ 583 (1026)
..-.|++.+|+ .+....++++|++.+++..+... .....||-|+..+.++. ...+.-.|.+.+.+.+.
T Consensus 205 ~e~~~l~irv~lW~~~~~~~~~~FlGevrv~v~~~~~~----s~p~~W~~Lqp~~~g~~----~~~~~~lGslrl~v~y~ 276 (800)
T KOG2059|consen 205 EEDDMLEIRVDLWNDLNLVINDVFLGEVRVPVDVLRQK----SSPAAWYYLQPRPNGEK----SSDGGDLGSLRLNVTYT 276 (800)
T ss_pred cCCceeeEEEeeccchhhhhhhhhceeEEeehhhhhhc----cCccceEEEecCCCccc----CCCCCCccceeeeEEee
Confidence 23468888898 45566799999999999987633 34678999998764421 12334457777777754
Q ss_pred C
Q 001696 584 G 584 (1026)
Q Consensus 584 ~ 584 (1026)
.
T Consensus 277 ~ 277 (800)
T KOG2059|consen 277 E 277 (800)
T ss_pred e
Confidence 3
No 9
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.86 E-value=3.4e-21 Score=187.95 Aligned_cols=149 Identities=63% Similarity=1.045 Sum_probs=127.7
Q ss_pred EEEEEEEeEecCCCCCCCCCCcEEEEEECCeEEEeeeecCCCCCCcccceeEEEeeCCCcCeEEEEEEEccCCCCCceeE
Q 001696 450 LRVNVIEAQDIVPNDRNRLPEGFVKVQVGNQVLKTKICPTPTTNPLWNEDLVFVAAEPFEEQLFLTVEDRVHASKDEVLG 529 (1026)
Q Consensus 450 l~V~I~~a~~L~~~d~~~~~dpyV~v~lg~~~~kT~~~~~~t~nP~wne~f~f~v~~~~~~~L~i~V~d~d~~~~d~~lG 529 (1026)
|+|+|++|++|+..+.++.+||||+++++++.++|+++.+++.||.|||.|.|.+.++....|.|+|+|++..++|++||
T Consensus 2 L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~~~~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~~~~dd~lG 81 (150)
T cd04019 2 LRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVGPNKDEPLG 81 (150)
T ss_pred EEEEEEEeECCCCCCCCCCCCeEEEEEECCEEeeeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEecCCCCCCeEE
Confidence 89999999999999999999999999999999999998433799999999999998877789999999999888999999
Q ss_pred EEEEeCcccccccCCCCccceeEEcccCCCCchhhhhhccccccceEEEEEEecCCccccCCcccccCCccc
Q 001696 530 KISLPLHIFEKRLDHRPVHSRWFNLEKFGFGAIEADRRKELKFSSRVHLRVCLEGGYHVLDESTMYISDQRP 601 (1026)
Q Consensus 530 ~~~i~l~~l~~~~~~~~~~~~w~~L~~~~~~~~~~~~~~~~~~~g~l~l~~~~~~~~~~~~~~~~~~~d~~~ 601 (1026)
++.++|.++....+.+....+||+|.+..... + .++..+..|+|++++++.+.+++.+++.+|++|++|
T Consensus 82 ~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~-~--~~k~~k~~g~l~l~i~~~~~~~~~~~~~~~~~~~~~ 150 (150)
T cd04019 82 RAVIPLNDIERRVDDRPVPSRWFSLERPGGAM-E--QKKKRKFASRIHLRLCLDGGYHVLDESTHYSSDLRP 150 (150)
T ss_pred EEEEEHHHCcccCCCCccCCceEECcCCCCcc-c--ccccCcccccEEEEEEecCcceEeecccccccCCCC
Confidence 99999999876434445679999999874210 0 112345689999999999999999999999999875
No 10
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.86 E-value=4.8e-21 Score=179.87 Aligned_cols=122 Identities=71% Similarity=1.186 Sum_probs=107.1
Q ss_pred EEEEEEEEecC---CCCCccCCCCCCcCcEEEEEECCEEEEeeeecCCCCceeecEEEEEeeCCCCEEEEEEEeCCCCCC
Q 001696 613 ILEVGILGAQG---LLPMKMKDGRGSTDAYCIAKYGQKWVRTRTILDTFNPKWNEQYTWEVYDPCTVITLGVFDNCHLGG 689 (1026)
Q Consensus 613 ~L~v~v~~a~~---L~~~~~~~~~~~~dpyv~v~~g~~~~~T~~~~~t~~P~wne~~~~~v~~~~~~l~i~v~d~~~~~~ 689 (1026)
+|+|+|++|+| |..+ |+.|.+||||+|++|++++||+++++++||+|||+|.|.+.++...|.|+|||++.++-
T Consensus 1 ~L~v~v~~A~~~~~l~~~---d~~g~sDPYv~i~~g~~~~rTk~~~~~~nP~WnE~f~f~v~~~~~~l~v~V~d~d~~~~ 77 (126)
T cd08379 1 ILEVGILGAQGLDVLRAK---DGRGSTDAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPVYDPCTVLTVGVFDNSQSHW 77 (126)
T ss_pred CeEEEEEEeECCcccccc---ccCCCCCeeEEEEECCEEeEcCcccCCCCCcceeEEEEEecCCCCEEEEEEEECCCccc
Confidence 48999999999 5554 88899999999999999999999999999999999999999888899999999987520
Q ss_pred CCccCCCCCCCCCeeEEEEEEcccccCCceEeeeEeeeecCCCCCccCcEEEE
Q 001696 690 GEKQNGSSAVRDSRIGKVRIRLSTLEAHRIYTHSYPLLVLHPHGVKKMGELQL 742 (1026)
Q Consensus 690 ~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l 742 (1026)
+ +...+|++||++.|+|+.+..+..+.+||+|...++++.++.|+|++
T Consensus 78 ~-----~~~~~dd~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~g~l~~ 125 (126)
T cd08379 78 K-----EAVQPDVLIGKVRIRLSTLEDDRVYAHSYPLLSLNPSGVKKMGELEC 125 (126)
T ss_pred c-----ccCCCCceEEEEEEEHHHccCCCEEeeEEEeEeCCCCCccCCcEEEe
Confidence 0 00136999999999999999999999999999888778888899875
No 11
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=99.86 E-value=7.8e-21 Score=177.30 Aligned_cols=118 Identities=22% Similarity=0.361 Sum_probs=104.0
Q ss_pred eEEEEEEEEecCCCCCccCCCCCCcCcEEEEEECCEEEEeeeecC-CCCceeecEEEEEeeCCCCEEEEEEEeCCCCCCC
Q 001696 612 GILEVGILGAQGLLPMKMKDGRGSTDAYCIAKYGQKWVRTRTILD-TFNPKWNEQYTWEVYDPCTVITLGVFDNCHLGGG 690 (1026)
Q Consensus 612 g~L~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~g~~~~~T~~~~~-t~~P~wne~~~~~v~~~~~~l~i~v~d~~~~~~~ 690 (1026)
|.|+|+|++|++|+.. + .|++||||+|.+|++++||+++.+ +.||.|||.|.|.+.+....|.|+|||++.++
T Consensus 2 g~L~v~v~~Ak~l~~~---~-~g~sDPYv~i~lg~~~~kT~v~~~~~~nP~WNe~F~f~v~~~~~~l~~~V~d~d~~~-- 75 (121)
T cd04016 2 GRLSITVVQAKLVKNY---G-LTRMDPYCRIRVGHAVYETPTAYNGAKNPRWNKTIQCTLPEGVDSIYIEIFDERAFT-- 75 (121)
T ss_pred cEEEEEEEEccCCCcC---C-CCCCCceEEEEECCEEEEeEEccCCCCCCccCeEEEEEecCCCcEEEEEEEeCCCCc--
Confidence 8999999999988764 4 689999999999999999999976 89999999999999877678999999999875
Q ss_pred CccCCCCCCCCCeeEEEEEEcc-cccCCceEeeeEeeeecCCCCCccCcEEEEEEEE
Q 001696 691 EKQNGSSAVRDSRIGKVRIRLS-TLEAHRIYTHSYPLLVLHPHGVKKMGELQLAIRF 746 (1026)
Q Consensus 691 ~~~~~~~~~~~~~lG~~~i~l~-~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f 746 (1026)
+|++||.+.|+|. .+..|+....||+|... .|.++.|+|+|.|+|
T Consensus 76 ---------~dd~iG~~~i~l~~~~~~g~~~~~W~~L~~~--~~~~~~g~i~l~l~y 121 (121)
T cd04016 76 ---------MDERIAWTHITIPESVFNGETLDDWYSLSGK--QGEDKEGMINLVFSY 121 (121)
T ss_pred ---------CCceEEEEEEECchhccCCCCccccEeCcCc--cCCCCceEEEEEEeC
Confidence 7999999999996 58888888999999743 344567999999976
No 12
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.84 E-value=8e-21 Score=181.69 Aligned_cols=127 Identities=53% Similarity=0.875 Sum_probs=109.8
Q ss_pred ceEEEEeecCCCccCCCCCCCCCEEEEEeCCceeeeccCCCCCCcccceeEEEeccCCCCCccceEEEEEeeCCCCCCCC
Q 001696 2 KLVVEVVDAYDLMPKDGEGSASPFAEVDFLNQLSKTKTIPKNLNPVWNQKLLFDFDQTKSHNHLRIEVSIYHHERRPIPG 81 (1026)
Q Consensus 2 ~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~T~~~~~t~nP~Wne~f~f~~~~~~~~~~~~L~~~V~d~d~~~~~~ 81 (1026)
+|+|+|++|++|++.+..|.+||||+|++++++++|+++.++.||+|||+|.|.+..+.......|.|+|||++.. ..+
T Consensus 1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~-~~~ 79 (127)
T cd04022 1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRS-GRR 79 (127)
T ss_pred CeEEEEEEeeCCCCCCCCCCcCcEEEEEECCEEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCC-cCC
Confidence 5899999999999999889999999999999999999999999999999999999865443346899999994432 126
Q ss_pred CccceeEEecCccccccCCceeEEeeccccccccccccccceeEEecC
Q 001696 82 RHFLGRVRIPCSNLVRKGEEVYQRFPLEKKWFLSSVKGEVGLKIYISP 129 (1026)
Q Consensus 82 d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~ 129 (1026)
++|||++.+++.++...+.....||+|++++..++++|+|+|++++.+
T Consensus 80 d~~lG~v~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~ 127 (127)
T cd04022 80 RSFLGRVRISGTSFVPPSEAVVQRYPLEKRGLFSRVRGEIGLKVYITD 127 (127)
T ss_pred CCeeeEEEEcHHHcCCCCCccceEeEeeeCCCCCCccEEEEEEEEEcC
Confidence 899999999999988555557899999988767789999999998754
No 13
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=99.82 E-value=2.1e-19 Score=167.67 Aligned_cols=118 Identities=21% Similarity=0.320 Sum_probs=102.5
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeEeeeecC-CCCCeEeEEEEEEecCCCCCeEEEEEEeCCCCCCCce
Q 001696 285 SYLYVRVVKAKDLPPSSITGSCDPYVEVKMGNYKGRTKHFEK-RMNPEWNQVFAFSKERIQSSMLEVFLKDKEMVGRDDY 363 (1026)
Q Consensus 285 ~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~-t~nP~wne~f~f~v~~~~~~~L~v~V~d~~~~~~d~~ 363 (1026)
|.|.|+|++|++++..+ .|++||||+|.+++++.+|+++.+ +.||+|||+|.|.+.+. ...|.|+|||++.+++|++
T Consensus 2 g~L~v~v~~Ak~l~~~~-~g~sDPYv~i~lg~~~~kT~v~~~~~~nP~WNe~F~f~v~~~-~~~l~~~V~d~d~~~~dd~ 79 (121)
T cd04016 2 GRLSITVVQAKLVKNYG-LTRMDPYCRIRVGHAVYETPTAYNGAKNPRWNKTIQCTLPEG-VDSIYIEIFDERAFTMDER 79 (121)
T ss_pred cEEEEEEEEccCCCcCC-CCCCCceEEEEECCEEEEeEEccCCCCCCccCeEEEEEecCC-CcEEEEEEEeCCCCcCCce
Confidence 68999999999988777 789999999999999999999876 79999999999999754 3689999999999999999
Q ss_pred eEEEEEEcc-ccCCCCCCCCCCCCEEEEeecCCCCCcccceEEEEEEe
Q 001696 364 LGRVAFDLN-EVPTRVPPDSPLAPQWYRLEDRRGEGKVRGQTMLAIWM 410 (1026)
Q Consensus 364 lG~~~i~l~-~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~ 410 (1026)
||.+.+++. .+..+...+ .||+|...++. ...|+|+++++|
T Consensus 80 iG~~~i~l~~~~~~g~~~~-----~W~~L~~~~~~-~~~g~i~l~l~y 121 (121)
T cd04016 80 IAWTHITIPESVFNGETLD-----DWYSLSGKQGE-DKEGMINLVFSY 121 (121)
T ss_pred EEEEEEECchhccCCCCcc-----ccEeCcCccCC-CCceEEEEEEeC
Confidence 999999996 466554444 99999986654 567999999876
No 14
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=99.82 E-value=1.4e-19 Score=172.89 Aligned_cols=117 Identities=30% Similarity=0.436 Sum_probs=101.6
Q ss_pred EEEEEEEecCCCCCccCCCCCCcCcEEEEEECCEEEEeeeecCCCCceeecEEEEEeeC------CCCEEEEEEEeCCCC
Q 001696 614 LEVGILGAQGLLPMKMKDGRGSTDAYCIAKYGQKWVRTRTILDTFNPKWNEQYTWEVYD------PCTVITLGVFDNCHL 687 (1026)
Q Consensus 614 L~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~g~~~~~T~~~~~t~~P~wne~~~~~v~~------~~~~l~i~v~d~~~~ 687 (1026)
++|+|++|+||+++ +..|.+||||+|++++.++||+++++++||+|||.|.|.+.. ....|.|.|||++.+
T Consensus 1 ~~V~V~~A~~L~~~---d~~g~~dpYv~v~l~~~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~ 77 (126)
T cd08682 1 VQVTVLQARGLLCK---GKSGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLL 77 (126)
T ss_pred CEEEEEECcCCcCC---CCCcCCCceEEEEECCeeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEcccc
Confidence 57999999999987 667899999999999999999999999999999999999977 366899999999986
Q ss_pred CCCCccCCCCCCCCCeeEEEEEEccccc--CCceEeeeEeeeecCCCCCccCcEEEEEE
Q 001696 688 GGGEKQNGSSAVRDSRIGKVRIRLSTLE--AHRIYTHSYPLLVLHPHGVKKMGELQLAI 744 (1026)
Q Consensus 688 ~~~~~~~~~~~~~~~~lG~~~i~l~~l~--~~~~~~~~~~L~~~~~~g~~~~G~i~l~~ 744 (1026)
+ +|++||++.|+|+++. .+.....||+|........+..|+|+|++
T Consensus 78 ~-----------~d~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~~~~~~~~~Gei~l~~ 125 (126)
T cd08682 78 G-----------LDKFLGQVSIPLNDLDEDKGRRRTRWFKLESKPGKDDKERGEIEVDI 125 (126)
T ss_pred C-----------CCceeEEEEEEHHHhhccCCCcccEEEECcCCCCCCccccceEEEEe
Confidence 5 7999999999999987 66677899999854433334479999876
No 15
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=99.81 E-value=5.7e-19 Score=167.39 Aligned_cols=119 Identities=26% Similarity=0.403 Sum_probs=106.2
Q ss_pred EEEEEEEecCCCCCccCCCCCCcCcEEEEEECC-EEEEeeeecCCCCceeecEEEEEeeCCCCEEEEEEEeCCCCCCCCc
Q 001696 614 LEVGILGAQGLLPMKMKDGRGSTDAYCIAKYGQ-KWVRTRTILDTFNPKWNEQYTWEVYDPCTVITLGVFDNCHLGGGEK 692 (1026)
Q Consensus 614 L~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~g~-~~~~T~~~~~t~~P~wne~~~~~v~~~~~~l~i~v~d~~~~~~~~~ 692 (1026)
|+|+|++|+||+.+ +..|.+||||++.+++ ..++|++++++.||.|||.|.|.+.++...|.|+|||++.++
T Consensus 2 L~v~v~~a~~L~~~---d~~g~~Dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~l~~~v~D~d~~~---- 74 (121)
T cd04042 2 LDIHLKEGRNLAAR---DRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIEDVTQPLYIKVFDYDRGL---- 74 (121)
T ss_pred eEEEEEEeeCCCCc---CCCCCCCCeEEEEECCEEEEEeeeccCCCCCccceeEEEEecCCCCeEEEEEEeCCCCC----
Confidence 78999999999987 6678999999999987 679999999999999999999999887889999999999865
Q ss_pred cCCCCCCCCCeeEEEEEEcccccCCceEeeeEeeeecCCCCCccCcEEEEEEEEee
Q 001696 693 QNGSSAVRDSRIGKVRIRLSTLEAHRIYTHSYPLLVLHPHGVKKMGELQLAIRFTI 748 (1026)
Q Consensus 693 ~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~~ 748 (1026)
++++||++.++|+++..+.....|++|.+.. +.+..|+|+|+++|+|
T Consensus 75 -------~~~~iG~~~~~l~~l~~~~~~~~~~~L~~~~--~~~~~G~l~l~~~~~~ 121 (121)
T cd04042 75 -------TDDFMGSAFVDLSTLELNKPTEVKLKLEDPN--SDEDLGYISLVVTLTP 121 (121)
T ss_pred -------CCcceEEEEEEHHHcCCCCCeEEEEECCCCC--CccCceEEEEEEEECC
Confidence 7999999999999999888889999997433 3356899999999864
No 16
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.80 E-value=3.9e-19 Score=173.44 Aligned_cols=137 Identities=23% Similarity=0.308 Sum_probs=111.0
Q ss_pred EEEEEEEEecCCCCCccCCCCCCcCcEEEEEECCEEEEeeeecC-CCCceeecEEEEEeeCC-CCEEEEEEEeCCCCCCC
Q 001696 613 ILEVGILGAQGLLPMKMKDGRGSTDAYCIAKYGQKWVRTRTILD-TFNPKWNEQYTWEVYDP-CTVITLGVFDNCHLGGG 690 (1026)
Q Consensus 613 ~L~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~g~~~~~T~~~~~-t~~P~wne~~~~~v~~~-~~~l~i~v~d~~~~~~~ 690 (1026)
.|+|+|++|+||+++ +..|.+||||++.++++..+|+++.+ ++||.|||.|.|.+.++ .+.|.|.|+|++.++
T Consensus 1 ~L~V~Vi~A~~L~~~---d~~g~sDPYV~v~l~~~~~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~~~-- 75 (150)
T cd04019 1 YLRVTVIEAQDLVPS---DKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVGPN-- 75 (150)
T ss_pred CEEEEEEEeECCCCC---CCCCCCCeEEEEEECCEEeeeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEecCCC--
Confidence 388999999999987 66789999999999999999999976 69999999999999876 458999999998754
Q ss_pred CccCCCCCCCCCeeEEEEEEcccccCC----ceEeeeEeeeecCC-----CCCccCcEEEEEEEEeecc-hhHhHhhhCC
Q 001696 691 EKQNGSSAVRDSRIGKVRIRLSTLEAH----RIYTHSYPLLVLHP-----HGVKKMGELQLAIRFTIFS-LASMIYVYGH 760 (1026)
Q Consensus 691 ~~~~~~~~~~~~~lG~~~i~l~~l~~~----~~~~~~~~L~~~~~-----~g~~~~G~i~l~~~f~~~~-~~~~~~~y~~ 760 (1026)
++++||++.|+|+++..+ .....||+|..... +..+..|+|+|++.|.... .......|.+
T Consensus 76 ---------~dd~lG~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~~~~~~~~~~~~~~~ 146 (150)
T cd04019 76 ---------KDEPLGRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLDGGYHVLDESTHYSS 146 (150)
T ss_pred ---------CCCeEEEEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcccccEEEEEEecCcceEeeccccccc
Confidence 789999999999999643 45689999985432 2234479999999998542 3344455655
Q ss_pred CCC
Q 001696 761 PLL 763 (1026)
Q Consensus 761 ~~~ 763 (1026)
.+.
T Consensus 147 ~~~ 149 (150)
T cd04019 147 DLR 149 (150)
T ss_pred CCC
Confidence 543
No 17
>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=99.80 E-value=1.7e-19 Score=170.26 Aligned_cols=117 Identities=30% Similarity=0.500 Sum_probs=101.6
Q ss_pred CceEEEEEEEEecCCCCCccCCCCCCcCcEEEEEECCEEEEeeeecCCCCceeecEEEEEeeCCCCEEEEEEEeCCCCCC
Q 001696 610 PVGILEVGILGAQGLLPMKMKDGRGSTDAYCIAKYGQKWVRTRTILDTFNPKWNEQYTWEVYDPCTVITLGVFDNCHLGG 689 (1026)
Q Consensus 610 ~~g~L~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~g~~~~~T~~~~~t~~P~wne~~~~~v~~~~~~l~i~v~d~~~~~~ 689 (1026)
.+|.|+|.|.+|.||... |..+++||||++++|+++.||+++++++||+|||.|+|.|.+++..|.++|||+|.++
T Consensus 4 ~vGLL~v~v~~g~~L~~r---D~~~sSDPyVVl~lg~q~lkT~~v~~n~NPeWNe~ltf~v~d~~~~lkv~VyD~D~fs- 79 (168)
T KOG1030|consen 4 LVGLLRVRVKRGKNLAIR---DFLGSSDPYVVLELGNQKLKTRVVYKNLNPEWNEELTFTVKDPNTPLKVTVYDKDTFS- 79 (168)
T ss_pred cceEEEEEEEeecCeeee---ccccCCCCeEEEEECCeeeeeeeecCCCCCcccceEEEEecCCCceEEEEEEeCCCCC-
Confidence 469999999999999986 6668999999999999999999999999999999999999999999999999999976
Q ss_pred CCccCCCCCCCCCeeEEEEEEcccccCCceEeeeEeeeecCCCCCccCcEEEEEE
Q 001696 690 GEKQNGSSAVRDSRIGKVRIRLSTLEAHRIYTHSYPLLVLHPHGVKKMGELQLAI 744 (1026)
Q Consensus 690 ~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~ 744 (1026)
.|+++|.+.|+|..+.... ..+| |....+.|... |+|.++.
T Consensus 80 ----------~dD~mG~A~I~l~p~~~~~--~~~~-l~~~~~~gt~~-~~v~~s~ 120 (168)
T KOG1030|consen 80 ----------SDDFMGEATIPLKPLLEAQ--KMDY-LKLELLTGTAI-GKVLLSR 120 (168)
T ss_pred ----------cccccceeeeccHHHHHHh--hhhc-cccccCCCcEe-eEEEecc
Confidence 8999999999999997766 4566 65555555544 6665543
No 18
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=99.80 E-value=7.6e-19 Score=173.40 Aligned_cols=124 Identities=27% Similarity=0.364 Sum_probs=108.5
Q ss_pred eEEEEEEEEecCCCCCccC---------------------------CCCCCcCcEEEEEECCEE-EEeeeecCCCCceee
Q 001696 612 GILEVGILGAQGLLPMKMK---------------------------DGRGSTDAYCIAKYGQKW-VRTRTILDTFNPKWN 663 (1026)
Q Consensus 612 g~L~v~v~~a~~L~~~~~~---------------------------~~~~~~dpyv~v~~g~~~-~~T~~~~~t~~P~wn 663 (1026)
|.|.|+|++|++|++|+.. .+.|.+||||+|.+++.+ .||++++++.||.||
T Consensus 7 G~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v~~~~~nP~Wn 86 (158)
T cd04015 7 GTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVIENSENPVWN 86 (158)
T ss_pred eeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEEeCCCCCCccc
Confidence 8999999999999998621 246789999999998765 699999999999999
Q ss_pred cEEEEEeeCCCCEEEEEEEeCCCCCCCCccCCCCCCCCCeeEEEEEEcccccCCceEeeeEeeeecCCCCCccCcEEEEE
Q 001696 664 EQYTWEVYDPCTVITLGVFDNCHLGGGEKQNGSSAVRDSRIGKVRIRLSTLEAHRIYTHSYPLLVLHPHGVKKMGELQLA 743 (1026)
Q Consensus 664 e~~~~~v~~~~~~l~i~v~d~~~~~~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~ 743 (1026)
|.|.|.+..+.+.|.|.|+|++.++ +++||++.|+|+++..+.....||+|.....++.+..|+|+|+
T Consensus 87 E~F~~~~~~~~~~l~~~V~d~d~~~------------~~~IG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~~~~~~l~v~ 154 (158)
T cd04015 87 ESFHIYCAHYASHVEFTVKDNDVVG------------AQLIGRAYIPVEDLLSGEPVEGWLPILDSNGKPPKPGAKIRVS 154 (158)
T ss_pred eEEEEEccCCCCEEEEEEEeCCCcC------------CcEEEEEEEEhHHccCCCCcceEEECcCCCCCCCCCCCEEEEE
Confidence 9999999888888999999998753 6899999999999998888899999986655555557899999
Q ss_pred EEEe
Q 001696 744 IRFT 747 (1026)
Q Consensus 744 ~~f~ 747 (1026)
++|+
T Consensus 155 ~~f~ 158 (158)
T cd04015 155 LQFT 158 (158)
T ss_pred EEEC
Confidence 9983
No 19
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.79 E-value=9.9e-19 Score=164.88 Aligned_cols=121 Identities=70% Similarity=1.213 Sum_probs=106.9
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeEeeeecCCCCCeEeEEEEEEecCCCCCeEEEEEEeCCCCCCCceeE
Q 001696 286 YLYVRVVKAKDLPPSSITGSCDPYVEVKMGNYKGRTKHFEKRMNPEWNQVFAFSKERIQSSMLEVFLKDKEMVGRDDYLG 365 (1026)
Q Consensus 286 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~v~V~d~~~~~~d~~lG 365 (1026)
+|.|+|++|+||+.+ .+||||++.+++++.+|++++++.||+|||+|.|.+..+....|.|+|||++.. ++++||
T Consensus 1 ~L~V~Vi~a~~L~~~----~~Dpyv~v~l~~~~~kT~v~~~t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~~-~~~~lG 75 (121)
T cd08378 1 YLYVRVVKARGLPAN----SNDPVVEVKLGNYKGSTKAIERTSNPEWNQVFAFSKDRLQGSTLEVSVWDKDKA-KDDFLG 75 (121)
T ss_pred CEEEEEEEecCCCcc----cCCCEEEEEECCccccccccCCCCCCccceEEEEEcCCCcCCEEEEEEEeCCCC-cCceee
Confidence 388999999999887 689999999999999999999999999999999998776678999999999987 899999
Q ss_pred EEEEEccccCCCCCCCCCCCCEEEEeecCCCCCcccceEEEEEEecc
Q 001696 366 RVAFDLNEVPTRVPPDSPLAPQWYRLEDRRGEGKVRGQTMLAIWMGT 412 (1026)
Q Consensus 366 ~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~ 412 (1026)
++.+++.++......++....+||+|.+..+ ++..|+|++++||++
T Consensus 76 ~~~i~l~~l~~~~~~~~~~~~~W~~L~~~~~-~~~~G~i~l~~~~~~ 121 (121)
T cd08378 76 GVCFDLSEVPTRVPPDSPLAPQWYRLEDKKG-GRVGGELMLAVWFGT 121 (121)
T ss_pred eEEEEhHhCcCCCCCCCCCCcceEEccCCCC-CccceEEEEEEEecC
Confidence 9999999997765444455669999998765 578899999999963
No 20
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.79 E-value=5.7e-19 Score=165.89 Aligned_cols=117 Identities=22% Similarity=0.351 Sum_probs=98.1
Q ss_pred ceEEEEeecCC---CccCCCCCCCCCEEEEEeCCceeeeccCCCCCCcccceeEEEeccCCCCCccceEEEEEeeCCCCC
Q 001696 2 KLVVEVVDAYD---LMPKDGEGSASPFAEVDFLNQLSKTKTIPKNLNPVWNQKLLFDFDQTKSHNHLRIEVSIYHHERRP 78 (1026)
Q Consensus 2 ~L~V~v~~a~~---L~~~~~~g~~dpyv~v~~~~~~~~T~~~~~t~nP~Wne~f~f~~~~~~~~~~~~L~~~V~d~d~~~ 78 (1026)
.|+|+|++|+| |..+|..|++||||+|++++++.+|+++++++||+|||+|.|.+.+.. ..|.|+|||.+..+
T Consensus 1 ~L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~~~~rTk~~~~~~nP~WnE~f~f~v~~~~----~~l~v~V~d~d~~~ 76 (126)
T cd08379 1 ILEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPVYDPC----TVLTVGVFDNSQSH 76 (126)
T ss_pred CeEEEEEEeECCccccccccCCCCCeeEEEEECCEEeEcCcccCCCCCcceeEEEEEecCCC----CEEEEEEEECCCcc
Confidence 38999999999 888999999999999999999999999999999999999999997655 48999999944421
Q ss_pred ----CCCCccceeEEecCccccccCCceeEEeeccccc-cccccccccce
Q 001696 79 ----IPGRHFLGRVRIPCSNLVRKGEEVYQRFPLEKKW-FLSSVKGEVGL 123 (1026)
Q Consensus 79 ----~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~-~~~~~~G~l~l 123 (1026)
..+|++||++.|+|.++.... ....||+|.... ...+..|+|++
T Consensus 77 ~~~~~~~dd~lG~~~i~l~~l~~~~-~~~~~~~L~~~~~~~~~~~g~l~~ 125 (126)
T cd08379 77 WKEAVQPDVLIGKVRIRLSTLEDDR-VYAHSYPLLSLNPSGVKKMGELEC 125 (126)
T ss_pred ccccCCCCceEEEEEEEHHHccCCC-EEeeEEEeEeCCCCCccCCcEEEe
Confidence 137999999999999988655 378899998654 22345677764
No 21
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=99.79 E-value=1.7e-18 Score=165.36 Aligned_cols=119 Identities=27% Similarity=0.501 Sum_probs=101.7
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeEeeeecCCCCCeEeEEEEEEecC-----CCCCeEEEEEEeCCCCCCC
Q 001696 287 LYVRVVKAKDLPPSSITGSCDPYVEVKMGNYKGRTKHFEKRMNPEWNQVFAFSKER-----IQSSMLEVFLKDKEMVGRD 361 (1026)
Q Consensus 287 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~v~~-----~~~~~L~v~V~d~~~~~~d 361 (1026)
++|+|++|+||+.++..|.+||||+|.+++.+++|++++++.||+|||+|.|.+.. +....|.|+|||++.+++|
T Consensus 1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~~~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~~~d 80 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLLGLD 80 (126)
T ss_pred CEEEEEECcCCcCCCCCcCCCceEEEEECCeeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccccCCC
Confidence 47999999999999989999999999999999999999999999999999999865 3567899999999999899
Q ss_pred ceeEEEEEEccccCCCCCCCCCCCCEEEEeecCCCC-CcccceEEEEE
Q 001696 362 DYLGRVAFDLNEVPTRVPPDSPLAPQWYRLEDRRGE-GKVRGQTMLAI 408 (1026)
Q Consensus 362 ~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~-~~~~G~i~l~~ 408 (1026)
++||++.|+|.++..... .....||+|....+. .+..|+|++++
T Consensus 81 ~~iG~~~i~l~~l~~~~~---~~~~~W~~L~~~~~~~~~~~Gei~l~~ 125 (126)
T cd08682 81 KFLGQVSIPLNDLDEDKG---RRRTRWFKLESKPGKDDKERGEIEVDI 125 (126)
T ss_pred ceeEEEEEEHHHhhccCC---CcccEEEECcCCCCCCccccceEEEEe
Confidence 999999999999873221 123499999865442 35789999876
No 22
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.78 E-value=3e-18 Score=163.93 Aligned_cols=121 Identities=33% Similarity=0.506 Sum_probs=105.1
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeEeeeecCCCCCeEeEEEEEEecCCC---CCeEEEEEEeCCCCC-CCc
Q 001696 287 LYVRVVKAKDLPPSSITGSCDPYVEVKMGNYKGRTKHFEKRMNPEWNQVFAFSKERIQ---SSMLEVFLKDKEMVG-RDD 362 (1026)
Q Consensus 287 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~---~~~L~v~V~d~~~~~-~d~ 362 (1026)
|+|+|++|++|++.+..|.+||||+|.+++++++|++++++.||.|||.|.|.+..+. ...|.|+|||.+.++ +++
T Consensus 2 L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~~~d~ 81 (127)
T cd04022 2 LVVEVVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSGRRRS 81 (127)
T ss_pred eEEEEEEeeCCCCCCCCCCcCcEEEEEECCEEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCcCCCC
Confidence 8899999999999998899999999999999999999999999999999999986542 468999999998886 899
Q ss_pred eeEEEEEEccccCCCCCCCCCCCCEEEEeecCCCCCcccceEEEEEEec
Q 001696 363 YLGRVAFDLNEVPTRVPPDSPLAPQWYRLEDRRGEGKVRGQTMLAIWMG 411 (1026)
Q Consensus 363 ~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~ 411 (1026)
+||++.+++.++.... .....||+|+.....++.+|+|+++++++
T Consensus 82 ~lG~v~i~l~~l~~~~----~~~~~w~~L~~~~~~~~~~G~l~l~~~~~ 126 (127)
T cd04022 82 FLGRVRISGTSFVPPS----EAVVQRYPLEKRGLFSRVRGEIGLKVYIT 126 (127)
T ss_pred eeeEEEEcHHHcCCCC----CccceEeEeeeCCCCCCccEEEEEEEEEc
Confidence 9999999999987321 23459999997654456899999999885
No 23
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=99.78 E-value=3.7e-18 Score=161.01 Aligned_cols=119 Identities=26% Similarity=0.409 Sum_probs=102.9
Q ss_pred EEEEEEEecCCCCCccCCCCCCcCcEEEEEECCE-EEEeeeecCCCCceeecEEEEEeeCCCCEEEEEEEeCCCCCCCCc
Q 001696 614 LEVGILGAQGLLPMKMKDGRGSTDAYCIAKYGQK-WVRTRTILDTFNPKWNEQYTWEVYDPCTVITLGVFDNCHLGGGEK 692 (1026)
Q Consensus 614 L~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~g~~-~~~T~~~~~t~~P~wne~~~~~v~~~~~~l~i~v~d~~~~~~~~~ 692 (1026)
|.|.|++|+||++++ +..|.+||||.|.++++ .++|+++++|+||.|||.|.|.|.+....|.|.|||++.++
T Consensus 2 l~v~v~~a~~L~~~~--~~~g~sDpYv~v~l~~~~~~kT~v~~kt~~P~WnE~F~f~v~~~~~~l~~~v~d~~~~~---- 75 (121)
T cd08401 2 LKIKIGEAKNLPPRS--GPNKMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIPRTFRHLSFYIYDRDVLR---- 75 (121)
T ss_pred eEEEEEEccCCCCCC--CCCCCcCcEEEEEECCccEEEeeEEECCCCCccCCeEEEEcCCCCCEEEEEEEECCCCC----
Confidence 679999999999873 23578999999999865 58999999999999999999999877678999999999865
Q ss_pred cCCCCCCCCCeeEEEEEEcccccCCceEeeeEeeeecCCCCCccCcEEEEEEEE
Q 001696 693 QNGSSAVRDSRIGKVRIRLSTLEAHRIYTHSYPLLVLHPHGVKKMGELQLAIRF 746 (1026)
Q Consensus 693 ~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f 746 (1026)
++++||++.|+|+++..+.....||+|......+. ..|+|+|+++|
T Consensus 76 -------~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~-~~G~i~l~~~~ 121 (121)
T cd08401 76 -------RDSVIGKVAIKKEDLHKYYGKDTWFPLQPVDADSE-VQGKVHLELRL 121 (121)
T ss_pred -------CCceEEEEEEEHHHccCCCCcEeeEEEEccCCCCc-ccEEEEEEEEC
Confidence 79999999999999988888899999986544333 46999999875
No 24
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.77 E-value=1.9e-18 Score=158.12 Aligned_cols=109 Identities=19% Similarity=0.387 Sum_probs=93.3
Q ss_pred eeEeeeccccceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC----eeeEeeeecCCCCCeEeEEEEEEec--CCCCC
Q 001696 273 RFTSTYDLVEQMSYLYVRVVKAKDLPPSSITGSCDPYVEVKMGN----YKGRTKHFEKRMNPEWNQVFAFSKE--RIQSS 346 (1026)
Q Consensus 273 ~~~~~y~~~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~----~~~kT~~~~~t~nP~wne~f~f~v~--~~~~~ 346 (1026)
+|++.|+. ..+.|.|+|++|++|+ . .|.+||||+|++.. .+.+|+++++|+||+|||+|.|.+. +....
T Consensus 4 ~fsL~Y~~--~~~~L~V~vikA~~L~-~--~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~ 78 (118)
T cd08677 4 HYSLSYDK--QKAELHVNILEAENIS-V--DAGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEESLDG 78 (118)
T ss_pred EEEEEEcC--cCCEEEEEEEEecCCC-C--CCCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHHhCCc
Confidence 78999987 6799999999999998 2 46699999999964 4779999999999999999999984 45578
Q ss_pred eEEEEEEeCCCCCCCceeEEEEEEccccCCCCCCCCCCCCEEEEe
Q 001696 347 MLEVFLKDKEMVGRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRL 391 (1026)
Q Consensus 347 ~L~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L 391 (1026)
.|.|+|||+|.++++++||++.+++.++......+ .|..|
T Consensus 79 tL~~~V~d~Drfs~~d~IG~v~l~l~~~~~~~~~~-----~W~~~ 118 (118)
T cd08677 79 TLTLTLRCCDRFSRHSTLGELRLKLADVSMMLGAA-----QWVDL 118 (118)
T ss_pred EEEEEEEeCCCCCCCceEEEEEEccccccCCcccc-----chhcC
Confidence 99999999999999999999999999875544333 67654
No 25
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=99.77 E-value=2.1e-18 Score=162.72 Aligned_cols=117 Identities=23% Similarity=0.350 Sum_probs=100.7
Q ss_pred eEEEEeecCCCccCC-CCCCCCCEEEEEeCCc-eeeeccCCCCCCcccceeEEEeccCCCCCccceEEEEEeeCCCCCCC
Q 001696 3 LVVEVVDAYDLMPKD-GEGSASPFAEVDFLNQ-LSKTKTIPKNLNPVWNQKLLFDFDQTKSHNHLRIEVSIYHHERRPIP 80 (1026)
Q Consensus 3 L~V~v~~a~~L~~~~-~~g~~dpyv~v~~~~~-~~~T~~~~~t~nP~Wne~f~f~~~~~~~~~~~~L~~~V~d~d~~~~~ 80 (1026)
|.|+|++|+||++.+ ..|.+||||+|++++. .++|+++++|+||+|||+|.|.+.... ..|.|.|||+++. +
T Consensus 2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~~~~~kT~v~~kt~~P~WnE~F~f~v~~~~----~~l~~~v~d~~~~--~ 75 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIPRTF----RHLSFYIYDRDVL--R 75 (121)
T ss_pred eEEEEEEccCCCCCCCCCCCcCcEEEEEECCccEEEeeEEECCCCCccCCeEEEEcCCCC----CEEEEEEEECCCC--C
Confidence 789999999999874 4678999999999764 689999999999999999999997543 5899999997664 4
Q ss_pred CCccceeEEecCccccccCCceeEEeeccccccccccccccceeEE
Q 001696 81 GRHFLGRVRIPCSNLVRKGEEVYQRFPLEKKWFLSSVKGEVGLKIY 126 (1026)
Q Consensus 81 ~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~ 126 (1026)
++++||++.++++++.... ....||+|++....++.+|+|++++.
T Consensus 76 ~~~~iG~~~i~l~~l~~~~-~~~~w~~L~~~~~~~~~~G~i~l~~~ 120 (121)
T cd08401 76 RDSVIGKVAIKKEDLHKYY-GKDTWFPLQPVDADSEVQGKVHLELR 120 (121)
T ss_pred CCceEEEEEEEHHHccCCC-CcEeeEEEEccCCCCcccEEEEEEEE
Confidence 8999999999999988654 37899999987666677999999875
No 26
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=99.77 E-value=3.7e-18 Score=161.24 Aligned_cols=109 Identities=28% Similarity=0.509 Sum_probs=96.6
Q ss_pred eeEeeeccccceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeEeeeecCCCCCeEeEEEEEEe---cCCC
Q 001696 273 RFTSTYDLVEQMSYLYVRVVKAKDLPPSSITGSCDPYVEVKMGN-----YKGRTKHFEKRMNPEWNQVFAFSK---ERIQ 344 (1026)
Q Consensus 273 ~~~~~y~~~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~-----~~~kT~~~~~t~nP~wne~f~f~v---~~~~ 344 (1026)
+|++.|+ .+.|.|+|++|+||+.++ .+.+||||+|++.+ .+++|++++++.||+|||+|.|.+ .+..
T Consensus 5 ~~~l~y~----~~~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~ 79 (122)
T cd08381 5 KLSISYK----NGTLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQ 79 (122)
T ss_pred EEEEEEe----CCEEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHHhC
Confidence 8899997 488999999999999999 88999999999973 468999999999999999999986 3445
Q ss_pred CCeEEEEEEeCCCCCCCceeEEEEEEccccCCCCCCCCCCCCEEEEe
Q 001696 345 SSMLEVFLKDKEMVGRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRL 391 (1026)
Q Consensus 345 ~~~L~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L 391 (1026)
...|.|+|||++.++++++||++.++|.++...... ..||+|
T Consensus 80 ~~~L~~~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~-----~~W~~L 121 (122)
T cd08381 80 QRVLQVSVWSHDSLVENEFLGGVCIPLKKLDLSQET-----EKWYPL 121 (122)
T ss_pred CCEEEEEEEeCCCCcCCcEEEEEEEeccccccCCCc-----cceEEC
Confidence 689999999999999999999999999999866443 389987
No 27
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.77 E-value=2.4e-18 Score=162.20 Aligned_cols=115 Identities=32% Similarity=0.430 Sum_probs=98.7
Q ss_pred eEEEEeecCCCccCCCCCCCCCEEEEEeCCceeeeccCCCCCCcccceeEEEeccCCCCCccceEEEEEeeCCCCCCCCC
Q 001696 3 LVVEVVDAYDLMPKDGEGSASPFAEVDFLNQLSKTKTIPKNLNPVWNQKLLFDFDQTKSHNHLRIEVSIYHHERRPIPGR 82 (1026)
Q Consensus 3 L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~T~~~~~t~nP~Wne~f~f~~~~~~~~~~~~L~~~V~d~d~~~~~~d 82 (1026)
|.|+|++|+||+.. .+||||+|++++.+.+|+++++|.||+|||+|.|.+.... ...|.|+|||++.. ++
T Consensus 2 L~V~Vi~a~~L~~~----~~Dpyv~v~l~~~~~kT~v~~~t~nP~Wne~F~f~~~~~~---~~~L~~~v~d~d~~---~~ 71 (121)
T cd08378 2 LYVRVVKARGLPAN----SNDPVVEVKLGNYKGSTKAIERTSNPEWNQVFAFSKDRLQ---GSTLEVSVWDKDKA---KD 71 (121)
T ss_pred EEEEEEEecCCCcc----cCCCEEEEEECCccccccccCCCCCCccceEEEEEcCCCc---CCEEEEEEEeCCCC---cC
Confidence 89999999999876 7999999999999999999999999999999999987643 26899999995432 78
Q ss_pred ccceeEEecCccccccC----CceeEEeeccccccccccccccceeEEec
Q 001696 83 HFLGRVRIPCSNLVRKG----EEVYQRFPLEKKWFLSSVKGEVGLKIYIS 128 (1026)
Q Consensus 83 ~~lG~~~i~l~~l~~~~----~~~~~w~~L~~~~~~~~~~G~l~l~~~~~ 128 (1026)
++||++.+++.++.... .....||+|++... ++.+|+|+|.++|.
T Consensus 72 ~~lG~~~i~l~~l~~~~~~~~~~~~~W~~L~~~~~-~~~~G~i~l~~~~~ 120 (121)
T cd08378 72 DFLGGVCFDLSEVPTRVPPDSPLAPQWYRLEDKKG-GRVGGELMLAVWFG 120 (121)
T ss_pred ceeeeEEEEhHhCcCCCCCCCCCCcceEEccCCCC-CccceEEEEEEEec
Confidence 99999999999986532 22568999998754 78899999999874
No 28
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=99.76 E-value=3.1e-18 Score=161.77 Aligned_cols=116 Identities=26% Similarity=0.474 Sum_probs=100.9
Q ss_pred eEEEEEEEEecCCCCCccCCCCCCcCcEEEEEECCEEEEeeeec-CCCCceeecEEEEEeeCC-CCEEEEEEEeCCCCCC
Q 001696 612 GILEVGILGAQGLLPMKMKDGRGSTDAYCIAKYGQKWVRTRTIL-DTFNPKWNEQYTWEVYDP-CTVITLGVFDNCHLGG 689 (1026)
Q Consensus 612 g~L~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~g~~~~~T~~~~-~t~~P~wne~~~~~v~~~-~~~l~i~v~d~~~~~~ 689 (1026)
|.|+|.|++|+||+.. +..+.+||||+|.+++...+|+++. ++.||.|||.|.|.+..+ .+.|.|+|||++..
T Consensus 1 g~L~V~v~~A~~L~~~---~~~~~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~-- 75 (118)
T cd08681 1 GTLVVVVLKARNLPNK---RKLDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDKR-- 75 (118)
T ss_pred CEEEEEEEEccCCCCC---CcCCCCCceEEEEECCCccccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCC--
Confidence 6899999999999987 6678999999999999999999985 479999999999999874 67899999998763
Q ss_pred CCccCCCCCCCCCeeEEEEEEcccccCCceEeeeEeeeecCCCCCccCcEEEEEEEE
Q 001696 690 GEKQNGSSAVRDSRIGKVRIRLSTLEAHRIYTHSYPLLVLHPHGVKKMGELQLAIRF 746 (1026)
Q Consensus 690 ~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f 746 (1026)
.|++||++.++++++..+....+||+|.. .| +..|+|+|++.|
T Consensus 76 ----------~~~~iG~~~~~l~~~~~~~~~~~w~~L~~---~~-~~~G~i~l~l~f 118 (118)
T cd08681 76 ----------KPDLIGDTEVDLSPALKEGEFDDWYELTL---KG-RYAGEVYLELTF 118 (118)
T ss_pred ----------CCcceEEEEEecHHHhhcCCCCCcEEecc---CC-cEeeEEEEEEEC
Confidence 38999999999999877766799999973 22 456999999976
No 29
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=99.76 E-value=1e-17 Score=161.11 Aligned_cols=119 Identities=28% Similarity=0.473 Sum_probs=102.4
Q ss_pred CCCceEEEEEEEEecCCCCCccCCCCCCcCcEEEEEECCEEEEeeeecCCCCceeecEEEEEeeCC-CCEEEEEEEeCCC
Q 001696 608 KPPVGILEVGILGAQGLLPMKMKDGRGSTDAYCIAKYGQKWVRTRTILDTFNPKWNEQYTWEVYDP-CTVITLGVFDNCH 686 (1026)
Q Consensus 608 ~~~~g~L~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~g~~~~~T~~~~~t~~P~wne~~~~~v~~~-~~~l~i~v~d~~~ 686 (1026)
...+|.|+|+|++|+||+++ +..|.+||||++.+++..++|++++++.||.|||.|.|.+.++ .+.|.|+|||++.
T Consensus 11 ~~~~G~L~V~Vi~A~~L~~~---d~~g~~DPYv~v~~~~~~~kT~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d~ 87 (136)
T cd08375 11 ASGIGRLMVVIVEGRDLKPC---NSNGKSDPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDRDF 87 (136)
T ss_pred CCCcEEEEEEEEEeeCCCCC---CCCCCcCcEEEEEECCEeeeccccCCCCCCccCceEEEEecCccCCEEEEEEEECCC
Confidence 46779999999999999987 6678999999999999999999999999999999999999875 5679999999997
Q ss_pred CCCCCccCCCCCCCCCeeEEEEEEcccccC-----CceEeeeEeeeecCCCCCccCcEEEEEEEE
Q 001696 687 LGGGEKQNGSSAVRDSRIGKVRIRLSTLEA-----HRIYTHSYPLLVLHPHGVKKMGELQLAIRF 746 (1026)
Q Consensus 687 ~~~~~~~~~~~~~~~~~lG~~~i~l~~l~~-----~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f 746 (1026)
++ +|++||++.|+|.++.. ...+..|.+|. + +..|+|+|++.|
T Consensus 88 ~~-----------~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~-----~-~~~g~i~l~~~~ 135 (136)
T cd08375 88 FS-----------PDDFLGRTEIRVADILKETKESKGPITKRLLLH-----E-VPTGEVVVKLDL 135 (136)
T ss_pred CC-----------CCCeeEEEEEEHHHhccccccCCCcEEEEeccc-----c-ccceeEEEEEEe
Confidence 65 78999999999999975 23445566653 2 335999999987
No 30
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.76 E-value=2.7e-18 Score=159.79 Aligned_cols=107 Identities=21% Similarity=0.347 Sum_probs=90.4
Q ss_pred ceEEEEeecCCCccCCCCCCCCCEEEEEeC-----C--ceeeeccCCCCCCcccceeEEEeccCCCCCccceEEEEEeeC
Q 001696 2 KLVVEVVDAYDLMPKDGEGSASPFAEVDFL-----N--QLSKTKTIPKNLNPVWNQKLLFDFDQTKSHNHLRIEVSIYHH 74 (1026)
Q Consensus 2 ~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~-----~--~~~~T~~~~~t~nP~Wne~f~f~~~~~~~~~~~~L~~~V~d~ 74 (1026)
+|+|+|++|+||+..+ .|.+||||+|++. . ++++|+++.+|+||+|||+|.|.+.+.+......|.|.|||+
T Consensus 1 kL~V~Vi~A~~L~~~d-~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~ 79 (120)
T cd08395 1 KVTVKVVAANDLKWQT-TGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDY 79 (120)
T ss_pred CEEEEEEECcCCCccc-CCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEe
Confidence 5899999999998887 4899999999983 2 357899999999999999999999865444446799999996
Q ss_pred CCCCCCCCccceeEEecCccccccCCceeEEeeccccc
Q 001696 75 ERRPIPGRHFLGRVRIPCSNLVRKGEEVYQRFPLEKKW 112 (1026)
Q Consensus 75 d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~ 112 (1026)
|. .+++++||++.+||.++...+. ...|++|+++.
T Consensus 80 d~--~~~dd~IG~~~l~l~~~~~~~~-~~~w~~L~~~~ 114 (120)
T cd08395 80 CF--ARDDRLVGVTVLQLRDIAQAGS-CACWLPLGRRI 114 (120)
T ss_pred cc--cCCCCEEEEEEEEHHHCcCCCc-EEEEEECcCcc
Confidence 53 3578999999999999997775 78899998763
No 31
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=99.76 E-value=9.3e-18 Score=157.96 Aligned_cols=113 Identities=26% Similarity=0.466 Sum_probs=102.0
Q ss_pred EEEEEEEecCCCCCccCCCCCCcCcEEEEEECCEEEEeeeecCCCCceeecEEEEEeeCC-CCEEEEEEEeCCCCCCCCc
Q 001696 614 LEVGILGAQGLLPMKMKDGRGSTDAYCIAKYGQKWVRTRTILDTFNPKWNEQYTWEVYDP-CTVITLGVFDNCHLGGGEK 692 (1026)
Q Consensus 614 L~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~g~~~~~T~~~~~t~~P~wne~~~~~v~~~-~~~l~i~v~d~~~~~~~~~ 692 (1026)
|+|.|++|+||+.+ +..+.+||||++++++...+|++++++.||.|||.|.|.+..+ ...|.|+|||++.++
T Consensus 2 ~~V~v~~a~~L~~~---~~~~~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~~~---- 74 (116)
T cd08376 2 VTIVLVEGKNLPPM---DDNGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKDTGK---- 74 (116)
T ss_pred EEEEEEEEECCCCC---CCCCCCCcEEEEEECCEeEecccccCCCCCceeEEEEEEecCCCCCEEEEEEEECCCCC----
Confidence 78999999999987 5578999999999999999999999999999999999999886 678999999999764
Q ss_pred cCCCCCCCCCeeEEEEEEcccccCCceEeeeEeeeecCCCCCccCcEEEEEEEEe
Q 001696 693 QNGSSAVRDSRIGKVRIRLSTLEAHRIYTHSYPLLVLHPHGVKKMGELQLAIRFT 747 (1026)
Q Consensus 693 ~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~ 747 (1026)
++++||++.++|+++..+.....||+|.. ..|+|++++.|+
T Consensus 75 -------~~~~iG~~~~~l~~l~~~~~~~~w~~L~~-------~~G~~~~~~~~~ 115 (116)
T cd08376 75 -------KDEFIGRCEIDLSALPREQTHSLELELED-------GEGSLLLLLTLT 115 (116)
T ss_pred -------CCCeEEEEEEeHHHCCCCCceEEEEEccC-------CCcEEEEEEEec
Confidence 79999999999999998888999999962 249999988764
No 32
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=99.76 E-value=1.5e-17 Score=158.27 Aligned_cols=119 Identities=24% Similarity=0.423 Sum_probs=101.5
Q ss_pred eEEEEEEEEecCCCCCccCCCCCCcCcEEEEEECCEE-EEeeeecCCCCceeecEEEEEeeCCC-CEEEEEEEeCCCCCC
Q 001696 612 GILEVGILGAQGLLPMKMKDGRGSTDAYCIAKYGQKW-VRTRTILDTFNPKWNEQYTWEVYDPC-TVITLGVFDNCHLGG 689 (1026)
Q Consensus 612 g~L~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~g~~~-~~T~~~~~t~~P~wne~~~~~v~~~~-~~l~i~v~d~~~~~~ 689 (1026)
..|+|.|++|+||++. +.+||||+|.+++.. .||++ +++.||.|||.|.|.+..+. ..|+|.|||++.++
T Consensus 4 ~~L~V~Vi~A~~L~~~------~~~DPYv~v~l~~~~~~kT~v-~~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~~~- 75 (126)
T cd08400 4 RSLQLNVLEAHKLPVK------HVPHPYCVISLNEVKVARTKV-REGPNPVWSEEFVFDDLPPDVNSFTISLSNKAKRS- 75 (126)
T ss_pred eEEEEEEEEeeCCCCC------CCCCeeEEEEECCEeEEEeec-CCCCCCccCCEEEEecCCCCcCEEEEEEEECCCCC-
Confidence 5799999999999863 378999999998754 78887 56899999999999976653 57999999998765
Q ss_pred CCccCCCCCCCCCeeEEEEEEcccccCCceEeeeEeeeecCCCCCccCcEEEEEEEEee
Q 001696 690 GEKQNGSSAVRDSRIGKVRIRLSTLEAHRIYTHSYPLLVLHPHGVKKMGELQLAIRFTI 748 (1026)
Q Consensus 690 ~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~~ 748 (1026)
+|++||++.|+|+++..+.....||+|......+.+..|+|+|+++|..
T Consensus 76 ----------~d~~iG~v~i~l~~l~~~~~~~~W~~L~~~~~~~~~~~G~i~l~l~~~~ 124 (126)
T cd08400 76 ----------KDSEIAEVTVQLSKLQNGQETDEWYPLSSASPLKGGEWGSLRIRARYSH 124 (126)
T ss_pred ----------CCCeEEEEEEEHhHccCCCcccEeEEcccCCCCCCCcCcEEEEEEEEEc
Confidence 7999999999999999998889999998655444555799999999965
No 33
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=99.75 E-value=1.5e-17 Score=157.54 Aligned_cols=118 Identities=27% Similarity=0.486 Sum_probs=103.5
Q ss_pred eEEEEEEEEecCCCCCccCCCCCCcCcEEEEEECCEEEEeeeecCCCCceeecEEEEEeeCCCCEEEEEEEeCCCCCCCC
Q 001696 612 GILEVGILGAQGLLPMKMKDGRGSTDAYCIAKYGQKWVRTRTILDTFNPKWNEQYTWEVYDPCTVITLGVFDNCHLGGGE 691 (1026)
Q Consensus 612 g~L~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~g~~~~~T~~~~~t~~P~wne~~~~~v~~~~~~l~i~v~d~~~~~~~~ 691 (1026)
|.|+|.|++|+||+.+ +..+.+||||++.+++..++|++++++.||.|||.|.|.+.+....|.|+|||++..+
T Consensus 1 g~l~v~v~~a~~L~~~---~~~~~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~~~~~~~~~~l~~~v~d~~~~~--- 74 (119)
T cd08377 1 GFLQVKVIRASGLAAA---DIGGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPIKDIHDVLEVTVYDEDKDK--- 74 (119)
T ss_pred CEEEEEEEeeeCCCCC---CCCCCCCcEEEEEECCEeeecceecCCcCCccCcEEEEEecCcCCEEEEEEEECCCCC---
Confidence 7899999999999987 5677899999999999999999999999999999999999877788999999998754
Q ss_pred ccCCCCCCCCCeeEEEEEEcccccCCceEeeeEeeeecCCCCCccCcEEEEEEEE
Q 001696 692 KQNGSSAVRDSRIGKVRIRLSTLEAHRIYTHSYPLLVLHPHGVKKMGELQLAIRF 746 (1026)
Q Consensus 692 ~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f 746 (1026)
++++||++.++|.++..+. ..||+|......+ +..|+|.|++.|
T Consensus 75 --------~~~~iG~~~~~l~~~~~~~--~~~~~l~~~~~~~-~~~G~i~l~~~~ 118 (119)
T cd08377 75 --------KPEFLGKVAIPLLSIKNGE--RKWYALKDKKLRT-RAKGSILLEMDV 118 (119)
T ss_pred --------CCceeeEEEEEHHHCCCCC--ceEEECcccCCCC-ceeeEEEEEEEe
Confidence 7899999999999998776 6899998543323 346999999876
No 34
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=99.75 E-value=7e-18 Score=161.02 Aligned_cols=121 Identities=23% Similarity=0.472 Sum_probs=103.0
Q ss_pred eEEEEeecCCCccCCCCCCCCCEEEEEeCC--ceeeeccCCCCCCcccceeEEEeccCCCCCccceEEEEEeeCCCCCCC
Q 001696 3 LVVEVVDAYDLMPKDGEGSASPFAEVDFLN--QLSKTKTIPKNLNPVWNQKLLFDFDQTKSHNHLRIEVSIYHHERRPIP 80 (1026)
Q Consensus 3 L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~--~~~~T~~~~~t~nP~Wne~f~f~~~~~~~~~~~~L~~~V~d~d~~~~~ 80 (1026)
|.|+|++|+||+. ..|.+||||++++++ .+++|+++.+|+||+|||+|.|.+.... ..|.|+|||++.. +
T Consensus 1 l~v~v~~A~~L~~--~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~----~~l~~~v~d~~~~--~ 72 (126)
T cd08678 1 LLVKNIKANGLSE--AAGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSPNS----KELLFEVYDNGKK--S 72 (126)
T ss_pred CEEEEEEecCCCC--CCCCcCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEeCCCC----CEEEEEEEECCCC--C
Confidence 6899999999976 778999999999974 6789999999999999999999986433 5899999996654 4
Q ss_pred CCccceeEEecCccccccCCceeEEeecccccc-ccccccccceeEEecCCCC
Q 001696 81 GRHFLGRVRIPCSNLVRKGEEVYQRFPLEKKWF-LSSVKGEVGLKIYISPQSE 132 (1026)
Q Consensus 81 ~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~-~~~~~G~l~l~~~~~~~~~ 132 (1026)
+++|||++.+++.++..... ...||+|+++.. .....|+|.+++.|.+.+.
T Consensus 73 ~~~~lG~~~i~l~~l~~~~~-~~~~~~L~~~~~~~~~~~G~l~l~~~~~~~~~ 124 (126)
T cd08678 73 DSKFLGLAIVPFDELRKNPS-GRQIFPLQGRPYEGDSVSGSITVEFLFMEPAE 124 (126)
T ss_pred CCceEEEEEEeHHHhccCCc-eeEEEEecCCCCCCCCcceEEEEEEEEecccc
Confidence 79999999999999887654 678999987642 3578999999999987653
No 35
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=99.75 E-value=2e-17 Score=156.76 Aligned_cols=120 Identities=24% Similarity=0.411 Sum_probs=106.6
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECC-eeeEeeeecCCCCCeEeEEEEEEecCCCCCeEEEEEEeCCCCCCCcee
Q 001696 286 YLYVRVVKAKDLPPSSITGSCDPYVEVKMGN-YKGRTKHFEKRMNPEWNQVFAFSKERIQSSMLEVFLKDKEMVGRDDYL 364 (1026)
Q Consensus 286 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~-~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~v~V~d~~~~~~d~~l 364 (1026)
+|+|+|++|++|+..+..|.+||||++.+++ ..++|+++.++.||.|||+|.|.+..+ ...|.|+|||++..+++++|
T Consensus 1 ~L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~-~~~l~~~v~D~d~~~~~~~i 79 (121)
T cd04042 1 QLDIHLKEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIEDV-TQPLYIKVFDYDRGLTDDFM 79 (121)
T ss_pred CeEEEEEEeeCCCCcCCCCCCCCeEEEEECCEEEEEeeeccCCCCCccceeEEEEecCC-CCeEEEEEEeCCCCCCCcce
Confidence 3889999999999999889999999999988 578999999999999999999998765 47899999999999999999
Q ss_pred EEEEEEccccCCCCCCCCCCCCEEEEeecCCCCCcccceEEEEEEecc
Q 001696 365 GRVAFDLNEVPTRVPPDSPLAPQWYRLEDRRGEGKVRGQTMLAIWMGT 412 (1026)
Q Consensus 365 G~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~ 412 (1026)
|++.+++.++..+...+ .|++|.+..+ .+..|+|++.+.+.+
T Consensus 80 G~~~~~l~~l~~~~~~~-----~~~~L~~~~~-~~~~G~l~l~~~~~~ 121 (121)
T cd04042 80 GSAFVDLSTLELNKPTE-----VKLKLEDPNS-DEDLGYISLVVTLTP 121 (121)
T ss_pred EEEEEEHHHcCCCCCeE-----EEEECCCCCC-ccCceEEEEEEEECC
Confidence 99999999998776555 8999987654 357899999998753
No 36
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.75 E-value=5.4e-18 Score=164.26 Aligned_cols=107 Identities=28% Similarity=0.478 Sum_probs=88.7
Q ss_pred ceEEEEeecCCCccCCCCCCCCCEEEEEeCC-----ceeeeccCCCCCCcccceeEEEecc------------CCCCCcc
Q 001696 2 KLVVEVVDAYDLMPKDGEGSASPFAEVDFLN-----QLSKTKTIPKNLNPVWNQKLLFDFD------------QTKSHNH 64 (1026)
Q Consensus 2 ~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~-----~~~~T~~~~~t~nP~Wne~f~f~~~------------~~~~~~~ 64 (1026)
+|.|+|++|+||+. .+|.+||||+|++.+ .+++|+++++|+||+|||+|.|.+. +.+....
T Consensus 1 kL~V~Vi~ArnL~~--~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~ 78 (148)
T cd04010 1 KLSVRVIECSDLAL--KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEK 78 (148)
T ss_pred CEEEEEEeCcCCCC--CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccE
Confidence 58999999999987 568999999999965 6789999999999999999999985 2222234
Q ss_pred ceEEEEEeeCCCCCCCCCccceeEEecCccccccCCceeEEeeccccc
Q 001696 65 LRIEVSIYHHERRPIPGRHFLGRVRIPCSNLVRKGEEVYQRFPLEKKW 112 (1026)
Q Consensus 65 ~~L~~~V~d~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~ 112 (1026)
..|.|.|||++.. +.|+|||++.|+|..+.........||+|+++.
T Consensus 79 ~~L~i~V~d~~~~--~~ddfLG~v~i~l~~l~~~~~~~~~W~~L~~~~ 124 (148)
T cd04010 79 LELRVDLWHASMG--GGDVFLGEVRIPLRGLDLQAGSHQAWYFLQPRE 124 (148)
T ss_pred EEEEEEEEcCCCC--CCCceeEEEEEecccccccCCcCcceeecCCcc
Confidence 6799999995443 579999999999999887623468899998875
No 37
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=99.75 E-value=3.4e-18 Score=197.60 Aligned_cols=411 Identities=18% Similarity=0.193 Sum_probs=261.2
Q ss_pred eeEeeeccccceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeEeeeecCCCCCeEeEEEEEEecCC---------
Q 001696 273 RFTSTYDLVEQMSYLYVRVVKAKDLPPSSITGSCDPYVEVKMGNYKGRTKHFEKRMNPEWNQVFAFSKERI--------- 343 (1026)
Q Consensus 273 ~~~~~y~~~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~--------- 343 (1026)
.+++.++-+ ....+++.|.+|+.|...+..+.+|||+.|.+-++.+.|.++.+|+||.|+++..|.-.+.
T Consensus 195 ~~Sc~~~e~-~~~~lR~yiyQar~L~a~dk~~~sdp~a~v~f~~qs~~T~~v~~tl~ptwdq~~~f~~~ei~ge~~~~~~ 273 (1105)
T KOG1326|consen 195 EFSCYLSEV-IHSPLRSYIYQARALGAPDKDDESDPDAAVEFCGQSKETEVVPGTLNPTWDQTIIFDEVEIYGEAHLVLK 273 (1105)
T ss_pred ceEEecchh-hhhhhHHHHHHHHhhcCCCcccCCCchhhhhcccccceeEeecCcCCCCccceeeccceeecCccchhhc
Confidence 455554433 5678999999999999999999999999999999999999999999999999998862111
Q ss_pred CCCeEEEEEEeCCCCCCCceeEEEEEEccccCCCCCCCCCCCCEEEEeecCCCCCcccceEEEEEEecccCchhhhhccc
Q 001696 344 QSSMLEVFLKDKEMVGRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLEDRRGEGKVRGQTMLAIWMGTQADEAFAEAWH 423 (1026)
Q Consensus 344 ~~~~L~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~~~d~~~~~~~~ 423 (1026)
.-..+.|+|||.+..+.++++|.+.....-... .+ ...|+++.... ...|++.++......+.. -+|.
T Consensus 274 ~ppi~v~e~yd~dr~g~~ef~gr~~~~p~V~~~-~p-----~lkw~p~~rg~---~l~gd~l~a~eliq~~~~---i~~p 341 (1105)
T KOG1326|consen 274 NPPIRVFEVYDLDRSGINEFKGRKKQRPYVMVQ-CP-----ALKWVPTMRGA---FLDGDVLIAAELIQIGKP---IPQP 341 (1105)
T ss_pred CCCeEEEEeehhhhhchHHhhcccccceEEEec-CC-----ccceEEeeccc---ccccchhHHHHHHhhcCC---CCCC
Confidence 125788999999999999999998876554443 11 23899998754 356777666433332221 1121
Q ss_pred ccCccccCCCccccccccccCCceEEEEEEEEEeEecCCCCCCCCCCcEEEEEECCeEEEeeeecCCCCCCcccceeEEE
Q 001696 424 SDASSVYGEGVFNIRSKVYVSPKLWYLRVNVIEAQDIVPNDRNRLPEGFVKVQVGNQVLKTKICPTPTTNPLWNEDLVFV 503 (1026)
Q Consensus 424 ~d~~~~~~~~~~~~r~~~~~~p~~~~l~V~I~~a~~L~~~d~~~~~dpyV~v~lg~~~~kT~~~~~~t~nP~wne~f~f~ 503 (1026)
.+.... .......+.-..-+.+.+.|-...-+|+..........|-+.+.+|++..++-.+...-.||.|+..|.+-
T Consensus 342 ~~~~~~---~~~~vp~~iRp~~q~~~~evl~wgLrn~k~~~m~~~~~P~~~~e~g~e~v~s~~I~~~k~npnf~s~~~~~ 418 (1105)
T KOG1326|consen 342 PPQREI---IFSLVPKKIRPKTQIGKAELLMWGLRNPKKSGMASTFSPALLVEFGGERVSSFSIFNRKKNPNFPSRVLGR 418 (1105)
T ss_pred Cccccc---ceeccccCCCcceeeeeeehhhhhhcccccccccccCCcceeEeeCCceEeeeeehhhhhCCCCceeEEEE
Confidence 111100 00000001111223345555555666666555556678999999999999888886566789998776554
Q ss_pred e-eCC----CcCeEEEEEEEccCCCCCceeEEEEEe-CcccccccCC----C-C-------------------ccceeEE
Q 001696 504 A-AEP----FEEQLFLTVEDRVHASKDEVLGKISLP-LHIFEKRLDH----R-P-------------------VHSRWFN 553 (1026)
Q Consensus 504 v-~~~----~~~~L~i~V~d~d~~~~d~~lG~~~i~-l~~l~~~~~~----~-~-------------------~~~~w~~ 553 (1026)
. .-+ ....+.++|.|.+.++.-..+|.|.|. +..+..+... . + ....|++
T Consensus 419 ~v~lpd~e~Y~ppl~akvvd~~~fg~~~v~g~c~i~~l~nf~c~p~~~~~~~Pq~~~d~~~~~~~~~~~~~~~~~~~~l~ 498 (1105)
T KOG1326|consen 419 LVILPDEELYMPPLNAKVVDLRQFGRMEVVGQCKILSLYNFFCDPSAVNSITPQFASDPVSIMMGSTDNEIRHCNSSTLP 498 (1105)
T ss_pred EEeccchHhhCccceeEEEecccccceeehhhhcchhhhhhccCchhhcccCcCCCCCchhhhcCCchhhhhhccccCCC
Confidence 3 222 345899999999999999999999876 2222211000 0 0 0001111
Q ss_pred cccCCCCch--------------hhhhhccccccceEEEEEEec----------------------CCc--cccCCcc--
Q 001696 554 LEKFGFGAI--------------EADRRKELKFSSRVHLRVCLE----------------------GGY--HVLDEST-- 593 (1026)
Q Consensus 554 L~~~~~~~~--------------~~~~~~~~~~~g~l~l~~~~~----------------------~~~--~~~~~~~-- 593 (1026)
......... ..++...........+.++-. |.. ...++..
T Consensus 499 ~~~~~~~~e~~~~~w~k~~~~~~~~~k~~~~~~K~~~~LKiyn~ele~v~ef~~l~D~~~~f~l~rG~~~~e~~e~~Ivg 578 (1105)
T KOG1326|consen 499 ASPHEDEEEREVDWWGKFYPSAEENAKWEVYEHKINVTLKIYNMELEMVAEFRGLQDWAVTFKLYRGKEGLECLEQQIVG 578 (1105)
T ss_pred CCccccccceehhhhhhccccccccccccccccccceEEEEehhhhhhHHHHhhhhhccceeEeeeccccCCCcccchhh
Confidence 111100000 000000011112234444410 000 0000000
Q ss_pred ---------ccc----CCccccccccC---CCCceEEEEEEEEecCCCCCccCCCCCCcCcEEEEEECCEE--EEeeeec
Q 001696 594 ---------MYI----SDQRPTAKQLW---KPPVGILEVGILGAQGLLPMKMKDGRGSTDAYCIAKYGQKW--VRTRTIL 655 (1026)
Q Consensus 594 ---------~~~----~d~~~~~~~~~---~~~~g~L~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~g~~~--~~T~~~~ 655 (1026)
+.. ....|...+.+ .+-.-.++|.|++|-+|.+. |++|++|||+++.+|++. -++..+.
T Consensus 579 ~fKgl~rIyp~~~~~~~p~~pr~~~~~~~~~pi~~LvrVyvv~A~~L~p~---D~ng~adpYv~l~lGk~~~~d~~~yip 655 (1105)
T KOG1326|consen 579 EFKGLFRIYPVPRNPSSPAPPRHFLDLPKEEPIKCLVRVYVVEAFSLQPS---DGNGDADPYVKLLLGKKRTLDRAHYIP 655 (1105)
T ss_pred hhhcceeeecCCCccCCCCChhhhhcccccCcceeeEEEEEEEeeecccc---CCCCCcCceeeeeeccchhhhhhhcCc
Confidence 000 00000000001 12335688999999999987 889999999999999988 6677778
Q ss_pred CCCCceeecEEEEEeeCC-CCEEEEEEEeCCCCCCCCccCCCCCCCCCeeEEEEEEccc
Q 001696 656 DTFNPKWNEQYTWEVYDP-CTVITLGVFDNCHLGGGEKQNGSSAVRDSRIGKVRIRLST 713 (1026)
Q Consensus 656 ~t~~P~wne~~~~~v~~~-~~~l~i~v~d~~~~~~~~~~~~~~~~~~~~lG~~~i~l~~ 713 (1026)
+|+||+|++.|++....| ...++|+|||+|..+ .|+.||...|+|..
T Consensus 656 ~tlnPVfgkmfel~~~lp~ek~l~v~vyd~D~~~-----------~d~~iget~iDLEn 703 (1105)
T KOG1326|consen 656 NTLNPVFGKMFELECLLPFEKDLIVEVYDHDLEA-----------QDEKIGETTIDLEN 703 (1105)
T ss_pred CCCCcHHHHHHHhhcccchhhcceeEEEEeeccc-----------ccchhhceehhhhh
Confidence 999999999999999998 446999999999865 79999999999876
No 38
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=99.75 E-value=1.2e-17 Score=157.69 Aligned_cols=100 Identities=26% Similarity=0.355 Sum_probs=89.3
Q ss_pred eEEEEEEEEecCCCCCccCCCCCCcCcEEEEEEC-----CEEEEeeeecCCCCceeecEEEEEee---C-CCCEEEEEEE
Q 001696 612 GILEVGILGAQGLLPMKMKDGRGSTDAYCIAKYG-----QKWVRTRTILDTFNPKWNEQYTWEVY---D-PCTVITLGVF 682 (1026)
Q Consensus 612 g~L~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~g-----~~~~~T~~~~~t~~P~wne~~~~~v~---~-~~~~l~i~v~ 682 (1026)
|.|.|.|++|+||+++ + .+.+||||+|++. ..+.||++++++.||.|||+|.|++. + ....|.|+||
T Consensus 13 ~~L~V~Vi~A~~L~~~---~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~ 88 (122)
T cd08381 13 GTLFVMVMHAKNLPLL---D-GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVW 88 (122)
T ss_pred CEEEEEEEEeeCCCCC---C-CCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEEE
Confidence 6899999999999987 6 7899999999995 34699999999999999999999982 2 3568999999
Q ss_pred eCCCCCCCCccCCCCCCCCCeeEEEEEEcccccCCceEeeeEee
Q 001696 683 DNCHLGGGEKQNGSSAVRDSRIGKVRIRLSTLEAHRIYTHSYPL 726 (1026)
Q Consensus 683 d~~~~~~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L 726 (1026)
|++.++ ++++||.+.|+|+++..+.....||+|
T Consensus 89 d~d~~~-----------~~~~lG~~~i~l~~l~~~~~~~~W~~L 121 (122)
T cd08381 89 SHDSLV-----------ENEFLGGVCIPLKKLDLSQETEKWYPL 121 (122)
T ss_pred eCCCCc-----------CCcEEEEEEEeccccccCCCccceEEC
Confidence 999865 799999999999999988878999997
No 39
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=99.75 E-value=2.2e-17 Score=157.62 Aligned_cols=119 Identities=22% Similarity=0.356 Sum_probs=102.3
Q ss_pred EEEEEEEecCCCCCccCCCCCCcCcEEEEEEC--CEEEEeeeecCCCCceeecEEEEEeeCCCCEEEEEEEeCCCCCCCC
Q 001696 614 LEVGILGAQGLLPMKMKDGRGSTDAYCIAKYG--QKWVRTRTILDTFNPKWNEQYTWEVYDPCTVITLGVFDNCHLGGGE 691 (1026)
Q Consensus 614 L~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~g--~~~~~T~~~~~t~~P~wne~~~~~v~~~~~~l~i~v~d~~~~~~~~ 691 (1026)
|.|.|++|+||+. ..|.+||||++.++ .+++||++++++.||.|||.|.|.+......|.|+|||++..+
T Consensus 1 l~v~v~~A~~L~~-----~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~~~--- 72 (126)
T cd08678 1 LLVKNIKANGLSE-----AAGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSPNSKELLFEVYDNGKKS--- 72 (126)
T ss_pred CEEEEEEecCCCC-----CCCCcCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEeCCCCCEEEEEEEECCCCC---
Confidence 5699999999985 35799999999997 4679999999999999999999999766778999999999864
Q ss_pred ccCCCCCCCCCeeEEEEEEcccccCCceEeeeEeeeecCCCCCccCcEEEEEEEEee
Q 001696 692 KQNGSSAVRDSRIGKVRIRLSTLEAHRIYTHSYPLLVLHPHGVKKMGELQLAIRFTI 748 (1026)
Q Consensus 692 ~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~~ 748 (1026)
++++||++.|+|+++..+.....||+|......+.+..|+|++++.|..
T Consensus 73 --------~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~l~l~~~~~~ 121 (126)
T cd08678 73 --------DSKFLGLAIVPFDELRKNPSGRQIFPLQGRPYEGDSVSGSITVEFLFME 121 (126)
T ss_pred --------CCceEEEEEEeHHHhccCCceeEEEEecCCCCCCCCcceEEEEEEEEec
Confidence 7999999999999998877778999998543333445799999999964
No 40
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.75 E-value=1.6e-17 Score=159.78 Aligned_cols=116 Identities=22% Similarity=0.297 Sum_probs=99.7
Q ss_pred ccc-eeEeeeccccceeEEEEEEEEeecCCCCC-CCCCCCcEEEEEECC-----eeeEeeeecCCCCCeEeEEEEEEecC
Q 001696 270 SGE-RFTSTYDLVEQMSYLYVRVVKAKDLPPSS-ITGSCDPYVEVKMGN-----YKGRTKHFEKRMNPEWNQVFAFSKER 342 (1026)
Q Consensus 270 ~g~-~~~~~y~~~~~~~~L~V~v~~a~~L~~~d-~~g~~dpyv~v~~~~-----~~~kT~~~~~t~nP~wne~f~f~v~~ 342 (1026)
+|+ ++++.|. .+.|.|+|++|+||++.+ ..|.+||||++++.+ .++||+++++|+||+|||+|.|.+.
T Consensus 17 ~G~l~lsl~y~----~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~- 91 (146)
T cd04028 17 MGDIQLGLYDK----KGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVS- 91 (146)
T ss_pred cceEEEEEEeC----CCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEc-
Confidence 466 8899984 489999999999998874 568899999999954 2679999999999999999999997
Q ss_pred CCCCeEEEEEE-eCCCCCCCceeEEEEEEccccCCCCCCCCCCCCEEEEeecCC
Q 001696 343 IQSSMLEVFLK-DKEMVGRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLEDRR 395 (1026)
Q Consensus 343 ~~~~~L~v~V~-d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~ 395 (1026)
+.+..|.|+|| |++.++++++||++.|+|+++....... .||+|.+..
T Consensus 92 l~~~~L~v~V~~d~~~~~~~~~iG~~~i~L~~l~~~~~~~-----~Wy~L~~~~ 140 (146)
T cd04028 92 PTGKTLQVIVWGDYGRMDKKVFMGVAQILLDDLDLSNLVI-----GWYKLFPTS 140 (146)
T ss_pred CCCCEEEEEEEeCCCCCCCCceEEEEEEEcccccCCCCce-----eEEecCCcc
Confidence 66789999999 5788889999999999999986654433 899999764
No 41
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=99.74 E-value=1.7e-17 Score=157.57 Aligned_cols=118 Identities=25% Similarity=0.404 Sum_probs=100.0
Q ss_pred cc-eeEeeeccccceeEEEEEEEEeecCCCCCCC-CCCCcEEEEEECC-----eeeEeeeecCCCCCeEeEEEEEEecC-
Q 001696 271 GE-RFTSTYDLVEQMSYLYVRVVKAKDLPPSSIT-GSCDPYVEVKMGN-----YKGRTKHFEKRMNPEWNQVFAFSKER- 342 (1026)
Q Consensus 271 g~-~~~~~y~~~~~~~~L~V~v~~a~~L~~~d~~-g~~dpyv~v~~~~-----~~~kT~~~~~t~nP~wne~f~f~v~~- 342 (1026)
|+ ++++.|+. ..+.|.|+|++|+||++++.. |.+||||++++.+ .++||++++++.||+|||+|.|.+..
T Consensus 2 G~i~~sl~Y~~--~~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~ 79 (128)
T cd08392 2 GEIEFALHYNF--RTSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEAD 79 (128)
T ss_pred cEEEEEEEEeC--CCCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCHH
Confidence 45 89999987 458999999999999998875 8999999999963 36799999999999999999999743
Q ss_pred -CCCCeEEEEEEeCCCCCCCceeEEEEEEccccCCCCCCCCCCCCEEEEee
Q 001696 343 -IQSSMLEVFLKDKEMVGRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLE 392 (1026)
Q Consensus 343 -~~~~~L~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~ 392 (1026)
+....|.|.|||.+.++++++||++.|+|.++...... +..+.||+|.
T Consensus 80 ~l~~~~L~v~V~~~~~~~~~~~lG~~~i~L~~~~~~~~~--~~~~~W~~l~ 128 (128)
T cd08392 80 LLSSRQLQVSVWHSRTLKRRVFLGEVLIPLADWDFEDTD--SQRFLWYPLN 128 (128)
T ss_pred HhCCcEEEEEEEeCCCCcCcceEEEEEEEcCCcccCCCC--ccccceEECc
Confidence 34579999999999999999999999999999655321 2345899873
No 42
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=99.74 E-value=1.4e-17 Score=158.29 Aligned_cols=115 Identities=28% Similarity=0.532 Sum_probs=99.2
Q ss_pred cc-eeEeeeccccceeEEEEEEEEeecCCCCCCC-CCCCcEEEEEECC-----eeeEeeeecCCCCCeEeEEEEEEec--
Q 001696 271 GE-RFTSTYDLVEQMSYLYVRVVKAKDLPPSSIT-GSCDPYVEVKMGN-----YKGRTKHFEKRMNPEWNQVFAFSKE-- 341 (1026)
Q Consensus 271 g~-~~~~~y~~~~~~~~L~V~v~~a~~L~~~d~~-g~~dpyv~v~~~~-----~~~kT~~~~~t~nP~wne~f~f~v~-- 341 (1026)
|+ ++++.|+. ..+.|.|+|++|+||++++.. |.+||||+|++.+ .+++|++++++.||+|||+|.|.+.
T Consensus 2 G~i~~sl~y~~--~~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~ 79 (125)
T cd08393 2 GSVQFALDYDP--KLRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVERE 79 (125)
T ss_pred cEEEEEEEEEC--CCCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHH
Confidence 45 88999987 458999999999999999875 8899999999953 3579999999999999999999985
Q ss_pred CCCCCeEEEEEEeCCCCCCCceeEEEEEEccccCCCCCCCCCCCCEEEEee
Q 001696 342 RIQSSMLEVFLKDKEMVGRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLE 392 (1026)
Q Consensus 342 ~~~~~~L~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~ 392 (1026)
+.....|.|+|||++.++++++||++.++|.++...... ..||+|+
T Consensus 80 ~l~~~~L~~~V~d~~~~~~~~~iG~~~i~L~~~~~~~~~-----~~W~~L~ 125 (125)
T cd08393 80 ELPTRVLNLSVWHRDSLGRNSFLGEVEVDLGSWDWSNTQ-----PTWYPLQ 125 (125)
T ss_pred HhCCCEEEEEEEeCCCCCCCcEeEEEEEecCccccCCCC-----cceEECc
Confidence 345679999999999999999999999999999766433 3899874
No 43
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=99.74 E-value=1.1e-17 Score=158.31 Aligned_cols=118 Identities=20% Similarity=0.329 Sum_probs=101.3
Q ss_pred eEEEEeecCCCccCCCCCCCCCEEEEEeCCc-eeeeccCCCCCCcccceeEEEeccCCCCCccceEEEEEeeCCCCCCCC
Q 001696 3 LVVEVVDAYDLMPKDGEGSASPFAEVDFLNQ-LSKTKTIPKNLNPVWNQKLLFDFDQTKSHNHLRIEVSIYHHERRPIPG 81 (1026)
Q Consensus 3 L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~-~~~T~~~~~t~nP~Wne~f~f~~~~~~~~~~~~L~~~V~d~d~~~~~~ 81 (1026)
|.|+|++|++|++.+..|.+||||+|.+++. ..+|+++++|+||+|||.|.|.+.... ..|.|+|||++.. +.
T Consensus 2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~~~----~~l~v~v~d~~~~--~~ 75 (121)
T cd04054 2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHLPPGF----HTVSFYVLDEDTL--SR 75 (121)
T ss_pred EEEEEEEeeCCcCCCCCCCCCceEEEEECCEeeeeeeeEcCCCCCcccceEEEeeCCCC----CEEEEEEEECCCC--CC
Confidence 8999999999999999999999999999765 479999999999999999999987543 5899999995543 57
Q ss_pred CccceeEEecCccccccCCceeEEeeccccccccccccccceeEE
Q 001696 82 RHFLGRVRIPCSNLVRKGEEVYQRFPLEKKWFLSSVKGEVGLKIY 126 (1026)
Q Consensus 82 d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~ 126 (1026)
|++||++.++++++...+.....|++|++........|+|++.++
T Consensus 76 d~~iG~~~~~~~~~~~~~~~~~~W~~L~~~~~~~~~~G~i~l~~~ 120 (121)
T cd04054 76 DDVIGKVSLTREVISAHPRGIDGWMNLTEVDPDEEVQGEIHLELS 120 (121)
T ss_pred CCEEEEEEEcHHHhccCCCCCCcEEECeeeCCCCccccEEEEEEE
Confidence 999999999998887544447789999987666678999998875
No 44
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=99.74 E-value=2.1e-17 Score=158.71 Aligned_cols=121 Identities=25% Similarity=0.437 Sum_probs=103.3
Q ss_pred eEEEEEEEEecCCCCCccCCC--CCCcCcEEEEEECCEEEEeeeecCCCCceeecEEEEEeeC-CCCEEEEEEEeCCCCC
Q 001696 612 GILEVGILGAQGLLPMKMKDG--RGSTDAYCIAKYGQKWVRTRTILDTFNPKWNEQYTWEVYD-PCTVITLGVFDNCHLG 688 (1026)
Q Consensus 612 g~L~v~v~~a~~L~~~~~~~~--~~~~dpyv~v~~g~~~~~T~~~~~t~~P~wne~~~~~v~~-~~~~l~i~v~d~~~~~ 688 (1026)
|.|+|.|++|+||+.. +. .+.+||||++.+++..++|++++++.||.|||.|.|.+.+ ....|.|+|||++.++
T Consensus 1 g~l~v~v~~a~~L~~~---~~~~~~~~dPyv~v~~~~~~~kT~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~~~ 77 (128)
T cd04024 1 GVLRVHVVEAKDLAAK---DRSGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKDRFA 77 (128)
T ss_pred CEEEEEEEEeeCCCcc---cCCCCCCcCCeEEEEECCEEEecceecCCcCCccCCcEEEEecCCCCCEEEEEEEECCCCC
Confidence 7899999999999987 44 7899999999999999999999999999999999999997 4778999999999764
Q ss_pred CCCccCCCCCCCCCeeEEEEEEccccc---CCceEeeeEeeeecCCC-CCccCcEEEEEEEE
Q 001696 689 GGEKQNGSSAVRDSRIGKVRIRLSTLE---AHRIYTHSYPLLVLHPH-GVKKMGELQLAIRF 746 (1026)
Q Consensus 689 ~~~~~~~~~~~~~~~lG~~~i~l~~l~---~~~~~~~~~~L~~~~~~-g~~~~G~i~l~~~f 746 (1026)
++++||++.|+|.++. .......||+|...... .....|+|+|++.|
T Consensus 78 -----------~~~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~~~G~i~l~~~~ 128 (128)
T cd04024 78 -----------GKDYLGEFDIALEEVFADGKTGQSDKWITLKSTRPGKTSVVSGEIHLQFSW 128 (128)
T ss_pred -----------CCCcceEEEEEHHHhhcccccCccceeEEccCcccCccccccceEEEEEEC
Confidence 7899999999999986 33446899999865322 23347999998753
No 45
>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=99.74 E-value=8.5e-18 Score=158.87 Aligned_cols=96 Identities=32% Similarity=0.554 Sum_probs=90.4
Q ss_pred ceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeEeeeecCCCCCeEeEEEEEEecCCCCCeEEEEEEeCCCCCCCc
Q 001696 283 QMSYLYVRVVKAKDLPPSSITGSCDPYVEVKMGNYKGRTKHFEKRMNPEWNQVFAFSKERIQSSMLEVFLKDKEMVGRDD 362 (1026)
Q Consensus 283 ~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~v~V~d~~~~~~d~ 362 (1026)
..|.|+|+|++|.||..+|..+++||||.+.+++++.||+++++++||+|||.|.|.+.++ ...|.++|||+|.+++||
T Consensus 4 ~vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg~q~lkT~~v~~n~NPeWNe~ltf~v~d~-~~~lkv~VyD~D~fs~dD 82 (168)
T KOG1030|consen 4 LVGLLRVRVKRGKNLAIRDFLGSSDPYVVLELGNQKLKTRVVYKNLNPEWNEELTFTVKDP-NTPLKVTVYDKDTFSSDD 82 (168)
T ss_pred cceEEEEEEEeecCeeeeccccCCCCeEEEEECCeeeeeeeecCCCCCcccceEEEEecCC-CceEEEEEEeCCCCCccc
Confidence 4589999999999999999889999999999999999999999999999999999999988 479999999999999999
Q ss_pred eeEEEEEEccccCCCCC
Q 001696 363 YLGRVAFDLNEVPTRVP 379 (1026)
Q Consensus 363 ~lG~~~i~l~~l~~~~~ 379 (1026)
+||.++|+|..+.....
T Consensus 83 ~mG~A~I~l~p~~~~~~ 99 (168)
T KOG1030|consen 83 FMGEATIPLKPLLEAQK 99 (168)
T ss_pred ccceeeeccHHHHHHhh
Confidence 99999999999987643
No 46
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=99.74 E-value=3.4e-17 Score=157.49 Aligned_cols=123 Identities=24% Similarity=0.494 Sum_probs=105.1
Q ss_pred ceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeEeeeecCCCCCeEeEEEEEEecCCCCCeEEEEEEeCCCCCCCc
Q 001696 283 QMSYLYVRVVKAKDLPPSSITGSCDPYVEVKMGNYKGRTKHFEKRMNPEWNQVFAFSKERIQSSMLEVFLKDKEMVGRDD 362 (1026)
Q Consensus 283 ~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~v~V~d~~~~~~d~ 362 (1026)
..|.|+|+|++|++|+..+..|.+||||++.++++.++|++++++.||.|||+|.|.+.++....|.|+|||++.+++|+
T Consensus 13 ~~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~~~~kT~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d~~~~d~ 92 (136)
T cd08375 13 GIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDRDFFSPDD 92 (136)
T ss_pred CcEEEEEEEEEeeCCCCCCCCCCcCcEEEEEECCEeeeccccCCCCCCccCceEEEEecCccCCEEEEEEEECCCCCCCC
Confidence 45899999999999999998999999999999999999999999999999999999998776789999999999999999
Q ss_pred eeEEEEEEccccCCCCCCCCCCCCEEEEeecCCCCCcccceEEEEEEe
Q 001696 363 YLGRVAFDLNEVPTRVPPDSPLAPQWYRLEDRRGEGKVRGQTMLAIWM 410 (1026)
Q Consensus 363 ~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~ 410 (1026)
+||++.+++.++.............|..+.. ...|+|++++.+
T Consensus 93 ~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~-----~~~g~i~l~~~~ 135 (136)
T cd08375 93 FLGRTEIRVADILKETKESKGPITKRLLLHE-----VPTGEVVVKLDL 135 (136)
T ss_pred eeEEEEEEHHHhccccccCCCcEEEEecccc-----ccceeEEEEEEe
Confidence 9999999999998633222223335666642 456999998865
No 47
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=99.74 E-value=1.1e-17 Score=159.66 Aligned_cols=117 Identities=35% Similarity=0.559 Sum_probs=101.5
Q ss_pred ceEEEEeecCCCccCCCCCCCCCEEEEEeCCceeeeccCCCCCCcccceeEEEeccCCCCCccceEEEEEeeCCCCC---
Q 001696 2 KLVVEVVDAYDLMPKDGEGSASPFAEVDFLNQLSKTKTIPKNLNPVWNQKLLFDFDQTKSHNHLRIEVSIYHHERRP--- 78 (1026)
Q Consensus 2 ~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~T~~~~~t~nP~Wne~f~f~~~~~~~~~~~~L~~~V~d~d~~~--- 78 (1026)
+|+|+|++|++|+..|..|.+||||+|++++..++|+++.+++||+|||+|.|.+.... ..|.|+|||+|...
T Consensus 2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~v~~t~~P~Wne~f~f~~~~~~----~~l~i~v~d~d~~~~~~ 77 (127)
T cd04027 2 KISITVVCAQGLIAKDKTGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHNSS----DRIKVRVWDEDDDIKSR 77 (127)
T ss_pred eEEEEEEECcCCcCCCCCCCcCcEEEEEECCEeeecceecCCCCCccceEEEEEecCCC----CEEEEEEEECCCCcccc
Confidence 58999999999999998899999999999888999999999999999999999986543 58999999976421
Q ss_pred ------CCCCccceeEEecCccccccCCceeEEeeccccccccccccccceeE
Q 001696 79 ------IPGRHFLGRVRIPCSNLVRKGEEVYQRFPLEKKWFLSSVKGEVGLKI 125 (1026)
Q Consensus 79 ------~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~ 125 (1026)
.+.+++||++.+++.++.. ....||.|++++..+.++|+|++++
T Consensus 78 ~~~~~~~~~~~~iG~~~i~l~~~~~---~~~~w~~L~~~~~~~~~~G~i~~~~ 127 (127)
T cd04027 78 LKQKFTRESDDFLGQTIIEVRTLSG---EMDVWYNLEKRTDKSAVSGAIRLHI 127 (127)
T ss_pred cceeccccCCCcceEEEEEhHHccC---CCCeEEECccCCCCCcEeEEEEEEC
Confidence 1368999999999988753 2579999999887788999999874
No 48
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=99.74 E-value=4.9e-17 Score=153.08 Aligned_cols=114 Identities=32% Similarity=0.550 Sum_probs=102.2
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeEeeeecCCCCCeEeEEEEEEecCCCCCeEEEEEEeCCCCCCCceeE
Q 001696 286 YLYVRVVKAKDLPPSSITGSCDPYVEVKMGNYKGRTKHFEKRMNPEWNQVFAFSKERIQSSMLEVFLKDKEMVGRDDYLG 365 (1026)
Q Consensus 286 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~v~V~d~~~~~~d~~lG 365 (1026)
+|+|+|++|++|+..+..+.+||||++++++++.+|++++++.||.|||+|.|.+.+.....|.|+|||++.++++++||
T Consensus 1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~~~~~~~iG 80 (116)
T cd08376 1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKDTGKKDEFIG 80 (116)
T ss_pred CEEEEEEEEECCCCCCCCCCCCcEEEEEECCEeEecccccCCCCCceeEEEEEEecCCCCCEEEEEEEECCCCCCCCeEE
Confidence 37899999999999998899999999999999999999999999999999999987766789999999999998999999
Q ss_pred EEEEEccccCCCCCCCCCCCCEEEEeecCCCCCcccceEEEEEEe
Q 001696 366 RVAFDLNEVPTRVPPDSPLAPQWYRLEDRRGEGKVRGQTMLAIWM 410 (1026)
Q Consensus 366 ~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~ 410 (1026)
++.+++.++..+...+ .|++|.+. .|+|++.+.|
T Consensus 81 ~~~~~l~~l~~~~~~~-----~w~~L~~~------~G~~~~~~~~ 114 (116)
T cd08376 81 RCEIDLSALPREQTHS-----LELELEDG------EGSLLLLLTL 114 (116)
T ss_pred EEEEeHHHCCCCCceE-----EEEEccCC------CcEEEEEEEe
Confidence 9999999988765444 89999864 3889887765
No 49
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=99.74 E-value=2.3e-17 Score=155.77 Aligned_cols=117 Identities=25% Similarity=0.427 Sum_probs=101.6
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeEeeeecC-CCCCeEeEEEEEEecCCCCCeEEEEEEeCCCCCCCce
Q 001696 285 SYLYVRVVKAKDLPPSSITGSCDPYVEVKMGNYKGRTKHFEK-RMNPEWNQVFAFSKERIQSSMLEVFLKDKEMVGRDDY 363 (1026)
Q Consensus 285 ~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~-t~nP~wne~f~f~v~~~~~~~L~v~V~d~~~~~~d~~ 363 (1026)
|.|+|+|++|++|+..+..+.+||||+|.+++.+.+|+++.+ +.||.|||+|.|.+.......|.|+|||++..+ +++
T Consensus 1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~-~~~ 79 (118)
T cd08681 1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDKRK-PDL 79 (118)
T ss_pred CEEEEEEEEccCCCCCCcCCCCCceEEEEECCCccccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCC-Ccc
Confidence 479999999999999998899999999999999999998754 789999999999997765678999999998875 999
Q ss_pred eEEEEEEccccCCCCCCCCCCCCEEEEeecCCCCCcccceEEEEEEe
Q 001696 364 LGRVAFDLNEVPTRVPPDSPLAPQWYRLEDRRGEGKVRGQTMLAIWM 410 (1026)
Q Consensus 364 lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~ 410 (1026)
||++.+++.++..+... ..||+|.... +..|+|++++.|
T Consensus 80 iG~~~~~l~~~~~~~~~-----~~w~~L~~~~---~~~G~i~l~l~f 118 (118)
T cd08681 80 IGDTEVDLSPALKEGEF-----DDWYELTLKG---RYAGEVYLELTF 118 (118)
T ss_pred eEEEEEecHHHhhcCCC-----CCcEEeccCC---cEeeEEEEEEEC
Confidence 99999999998765433 3899998642 578999998865
No 50
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=99.73 E-value=3.2e-17 Score=155.60 Aligned_cols=115 Identities=23% Similarity=0.382 Sum_probs=99.2
Q ss_pred cc-eeEeeeccccceeEEEEEEEEeecCCCCCC-CCCCCcEEEEEECC-----eeeEeeeecCCCCCeEeEEEEEEecC-
Q 001696 271 GE-RFTSTYDLVEQMSYLYVRVVKAKDLPPSSI-TGSCDPYVEVKMGN-----YKGRTKHFEKRMNPEWNQVFAFSKER- 342 (1026)
Q Consensus 271 g~-~~~~~y~~~~~~~~L~V~v~~a~~L~~~d~-~g~~dpyv~v~~~~-----~~~kT~~~~~t~nP~wne~f~f~v~~- 342 (1026)
|+ ++++.|+. ..+.|.|+|++|+||++.+. .|.+||||+|++.+ .++||++++++.||+|||+|.|.+..
T Consensus 2 G~i~~sl~y~~--~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~ 79 (125)
T cd04029 2 GEILFSLSYDY--KTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHS 79 (125)
T ss_pred cEEEEEEEEEC--CCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHH
Confidence 45 88999976 56899999999999998765 47899999999953 35799999999999999999999854
Q ss_pred -CCCCeEEEEEEeCCCCCCCceeEEEEEEccccCCCCCCCCCCCCEEEEee
Q 001696 343 -IQSSMLEVFLKDKEMVGRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLE 392 (1026)
Q Consensus 343 -~~~~~L~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~ 392 (1026)
.....|.|+|||++.++++++||++.++|.++......+ .||+|.
T Consensus 80 ~l~~~~L~~~V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~-----~w~~l~ 125 (125)
T cd04029 80 QLETRTLQLSVWHYDRFGRNTFLGEVEIPLDSWNFDSQHE-----ECLPLH 125 (125)
T ss_pred HhCCCEEEEEEEECCCCCCCcEEEEEEEeCCcccccCCcc-----cEEECc
Confidence 345789999999999999999999999999998776544 899984
No 51
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.73 E-value=5e-17 Score=156.36 Aligned_cols=104 Identities=21% Similarity=0.351 Sum_probs=90.3
Q ss_pred eEEEEEEEEecCCCCCccCCCCCCcCcEEEEEE--CC---EEEEeeeecCCCCceeecEEEEEeeCCCCEEEEEEE-eCC
Q 001696 612 GILEVGILGAQGLLPMKMKDGRGSTDAYCIAKY--GQ---KWVRTRTILDTFNPKWNEQYTWEVYDPCTVITLGVF-DNC 685 (1026)
Q Consensus 612 g~L~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~--g~---~~~~T~~~~~t~~P~wne~~~~~v~~~~~~l~i~v~-d~~ 685 (1026)
|.|.|.|++|+||++++ +..|.+||||++++ ++ .+.||+++++++||+|||.|.|.+......|.|+|| |++
T Consensus 29 ~~L~V~Vi~ArnL~~~~--~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~l~~~~L~v~V~~d~~ 106 (146)
T cd04028 29 GQLEVEVIRARGLVQKP--GSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVSPTGKTLQVIVWGDYG 106 (146)
T ss_pred CEEEEEEEEeeCCCccc--CCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEcCCCCEEEEEEEeCCC
Confidence 78999999999998762 24678999999998 32 378999999999999999999999966778999999 566
Q ss_pred CCCCCCccCCCCCCCCCeeEEEEEEcccccCCceEeeeEeeee
Q 001696 686 HLGGGEKQNGSSAVRDSRIGKVRIRLSTLEAHRIYTHSYPLLV 728 (1026)
Q Consensus 686 ~~~~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~ 728 (1026)
.++ ++++||.+.|+|+++..+.....||+|..
T Consensus 107 ~~~-----------~~~~iG~~~i~L~~l~~~~~~~~Wy~L~~ 138 (146)
T cd04028 107 RMD-----------KKVFMGVAQILLDDLDLSNLVIGWYKLFP 138 (146)
T ss_pred CCC-----------CCceEEEEEEEcccccCCCCceeEEecCC
Confidence 543 78999999999999988877899999974
No 52
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.73 E-value=4e-17 Score=149.36 Aligned_cols=101 Identities=19% Similarity=0.236 Sum_probs=85.9
Q ss_pred CCceEEEEEEEEecCCCCCccCCCCCCcCcEEEEEECC----EEEEeeeecCCCCceeecEEEEEeeC---CCCEEEEEE
Q 001696 609 PPVGILEVGILGAQGLLPMKMKDGRGSTDAYCIAKYGQ----KWVRTRTILDTFNPKWNEQYTWEVYD---PCTVITLGV 681 (1026)
Q Consensus 609 ~~~g~L~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~g~----~~~~T~~~~~t~~P~wne~~~~~v~~---~~~~l~i~v 681 (1026)
+..|.|.|.|++|+||+ + + |.+||||++.+.. .+.+|+++++|+||+|||+|.|.|.. +...|.|.|
T Consensus 11 ~~~~~L~V~vikA~~L~-~---~--g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~tL~~~V 84 (118)
T cd08677 11 KQKAELHVNILEAENIS-V---D--AGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEESLDGTLTLTL 84 (118)
T ss_pred CcCCEEEEEEEEecCCC-C---C--CCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHHhCCcEEEEEE
Confidence 34489999999999998 3 3 4599999999853 57899999999999999999999974 356799999
Q ss_pred EeCCCCCCCCccCCCCCCCCCeeEEEEEEcccccCCceEeeeEee
Q 001696 682 FDNCHLGGGEKQNGSSAVRDSRIGKVRIRLSTLEAHRIYTHSYPL 726 (1026)
Q Consensus 682 ~d~~~~~~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L 726 (1026)
||+|+++ ++++||++.++++++..+...++|..|
T Consensus 85 ~d~Drfs-----------~~d~IG~v~l~l~~~~~~~~~~~W~~~ 118 (118)
T cd08677 85 RCCDRFS-----------RHSTLGELRLKLADVSMMLGAAQWVDL 118 (118)
T ss_pred EeCCCCC-----------CCceEEEEEEccccccCCccccchhcC
Confidence 9999986 899999999999988666555788654
No 53
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=99.73 E-value=4.8e-17 Score=154.33 Aligned_cols=104 Identities=20% Similarity=0.289 Sum_probs=90.3
Q ss_pred ceEEEEEEEEecCCCCCccCCCCCCcCcEEEEEEC-----CEEEEeeeecCCCCceeecEEEEEeeC---CCCEEEEEEE
Q 001696 611 VGILEVGILGAQGLLPMKMKDGRGSTDAYCIAKYG-----QKWVRTRTILDTFNPKWNEQYTWEVYD---PCTVITLGVF 682 (1026)
Q Consensus 611 ~g~L~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~g-----~~~~~T~~~~~t~~P~wne~~~~~v~~---~~~~l~i~v~ 682 (1026)
.|.|.|.|++|+||++++ ...|.+||||+|++. ..+.||++++++.||.|||+|.|.+.. ....|.|+||
T Consensus 14 ~~~L~V~Vi~a~~L~~~~--~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~l~~~~L~~~V~ 91 (125)
T cd04029 14 TQSLNVHVKECRNLAYGD--EAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQLETRTLQLSVW 91 (125)
T ss_pred CCeEEEEEEEecCCCccC--CCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHHHhCCCEEEEEEE
Confidence 378999999999999863 235789999999883 235899999999999999999999975 3557999999
Q ss_pred eCCCCCCCCccCCCCCCCCCeeEEEEEEcccccCCceEeeeEeee
Q 001696 683 DNCHLGGGEKQNGSSAVRDSRIGKVRIRLSTLEAHRIYTHSYPLL 727 (1026)
Q Consensus 683 d~~~~~~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~ 727 (1026)
|++.++ ++++||.+.|+|.++........||||.
T Consensus 92 d~~~~~-----------~~~~lG~~~i~l~~~~~~~~~~~w~~l~ 125 (125)
T cd04029 92 HYDRFG-----------RNTFLGEVEIPLDSWNFDSQHEECLPLH 125 (125)
T ss_pred ECCCCC-----------CCcEEEEEEEeCCcccccCCcccEEECc
Confidence 999865 7899999999999999888899999983
No 54
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=99.72 E-value=3.3e-17 Score=155.69 Aligned_cols=101 Identities=28% Similarity=0.414 Sum_probs=88.9
Q ss_pred eEEEEEEEEecCCCCCccCCCC-CCcCcEEEEEEC-----CEEEEeeeecCCCCceeecEEEEEeeC---CCCEEEEEEE
Q 001696 612 GILEVGILGAQGLLPMKMKDGR-GSTDAYCIAKYG-----QKWVRTRTILDTFNPKWNEQYTWEVYD---PCTVITLGVF 682 (1026)
Q Consensus 612 g~L~v~v~~a~~L~~~~~~~~~-~~~dpyv~v~~g-----~~~~~T~~~~~t~~P~wne~~~~~v~~---~~~~l~i~v~ 682 (1026)
+.|.|.|++|+||+++ +.. |.+||||++++. ..+.||+++++++||+|||.|.|.+.. ....|.|+||
T Consensus 15 ~~L~V~vi~a~~L~~~---d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~~l~~~~L~~~V~ 91 (125)
T cd08393 15 RELHVHVIQCQDLAAA---DPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVEREELPTRVLNLSVW 91 (125)
T ss_pred CEEEEEEEEeCCCCCc---CCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHHHhCCCEEEEEEE
Confidence 7899999999999997 554 789999999983 235899999999999999999999864 2458999999
Q ss_pred eCCCCCCCCccCCCCCCCCCeeEEEEEEcccccCCceEeeeEee
Q 001696 683 DNCHLGGGEKQNGSSAVRDSRIGKVRIRLSTLEAHRIYTHSYPL 726 (1026)
Q Consensus 683 d~~~~~~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L 726 (1026)
|++.++ ++++||.+.|+|.++..+.....||+|
T Consensus 92 d~~~~~-----------~~~~iG~~~i~L~~~~~~~~~~~W~~L 124 (125)
T cd08393 92 HRDSLG-----------RNSFLGEVEVDLGSWDWSNTQPTWYPL 124 (125)
T ss_pred eCCCCC-----------CCcEeEEEEEecCccccCCCCcceEEC
Confidence 999865 789999999999999888777899997
No 55
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.72 E-value=2.4e-17 Score=151.83 Aligned_cols=103 Identities=23% Similarity=0.384 Sum_probs=90.8
Q ss_pred ceEEEEeecCCCccCCCCCCCCCEEEEEeCCceeeeccCCCCCCcccceeEEEeccCCCCCccceEEEEEeeCCCCCCCC
Q 001696 2 KLVVEVVDAYDLMPKDGEGSASPFAEVDFLNQLSKTKTIPKNLNPVWNQKLLFDFDQTKSHNHLRIEVSIYHHERRPIPG 81 (1026)
Q Consensus 2 ~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~T~~~~~t~nP~Wne~f~f~~~~~~~~~~~~L~~~V~d~d~~~~~~ 81 (1026)
.|.|+|++|+||+..+..+.+||||+|++++++++|+++.+|.||+|||+|.|.+.++.. +.|.|+|||++.
T Consensus 1 ~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~---~~l~v~v~d~~~----- 72 (105)
T cd04050 1 LLFVYLDSAKNLPLAKSTKEPSPYVELTVGKTTQKSKVKERTNNPVWEEGFTFLVRNPEN---QELEIEVKDDKT----- 72 (105)
T ss_pred CEEEEEeeecCCCCcccCCCCCcEEEEEECCEEEeCccccCCCCCcccceEEEEeCCCCC---CEEEEEEEECCC-----
Confidence 489999999999999888999999999999999999999999999999999999987643 689999999332
Q ss_pred CccceeEEecCccccccC-CceeEEeeccccc
Q 001696 82 RHFLGRVRIPCSNLVRKG-EEVYQRFPLEKKW 112 (1026)
Q Consensus 82 d~~lG~~~i~l~~l~~~~-~~~~~w~~L~~~~ 112 (1026)
+++||++.++|.++.... .....||+|++++
T Consensus 73 ~~~iG~~~i~l~~l~~~~~~~~~~w~~L~~~g 104 (105)
T cd04050 73 GKSLGSLTLPLSELLKEPDLTLDQPFPLDNSG 104 (105)
T ss_pred CCccEEEEEEHHHhhccccceeeeeEecCCCC
Confidence 789999999999987654 3478999998754
No 56
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.72 E-value=6.5e-17 Score=156.27 Aligned_cols=118 Identities=30% Similarity=0.447 Sum_probs=100.5
Q ss_pred EEEEEEEecCCCCCccCCCCCCcCcEEEEEECCE-------EEEeeeecCCCCceeecEEEEEeeCCCCEEEEEEEeCCC
Q 001696 614 LEVGILGAQGLLPMKMKDGRGSTDAYCIAKYGQK-------WVRTRTILDTFNPKWNEQYTWEVYDPCTVITLGVFDNCH 686 (1026)
Q Consensus 614 L~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~g~~-------~~~T~~~~~t~~P~wne~~~~~v~~~~~~l~i~v~d~~~ 686 (1026)
|+|+|++|+||+.+ +..|.+||||++.+++. .++|++++++.||.|||.|.|.+......|.|+|||++.
T Consensus 2 L~v~Vi~a~~L~~~---d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~ 78 (133)
T cd04033 2 LRVKVLAGIDLAKK---DIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPREHRLLFEVFDENR 78 (133)
T ss_pred EEEEEEEeECCCcc---cCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCCCCEEEEEEEECCC
Confidence 78999999999987 66789999999999654 579999999999999999999997767789999999998
Q ss_pred CCCCCccCCCCCCCCCeeEEEEEEcccccCCc------eEeeeEeeeecCCCCCccCcEEEEEEEE
Q 001696 687 LGGGEKQNGSSAVRDSRIGKVRIRLSTLEAHR------IYTHSYPLLVLHPHGVKKMGELQLAIRF 746 (1026)
Q Consensus 687 ~~~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~------~~~~~~~L~~~~~~g~~~~G~i~l~~~f 746 (1026)
++ ++++||++.|+++++..+. ....||+|......+ +..|+|+|++.|
T Consensus 79 ~~-----------~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~-~~~G~l~~~~~~ 132 (133)
T cd04033 79 LT-----------RDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSSKS-RVKGHLRLYMAY 132 (133)
T ss_pred CC-----------CCCeeEEEEEEHHHCCCcCccccccccchheeeeecCCCC-cceeEEEEEEee
Confidence 65 7899999999999987653 246999998544333 346999999987
No 57
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=99.72 E-value=5.1e-17 Score=154.59 Aligned_cols=119 Identities=24% Similarity=0.416 Sum_probs=101.4
Q ss_pred EEEEEEEEecCCCCCccCCCCCCcCcEEEEEECCEEEEeeeecCCCCceeecEEEEEeeCC-CCEEEEEEEeCCCCCCCC
Q 001696 613 ILEVGILGAQGLLPMKMKDGRGSTDAYCIAKYGQKWVRTRTILDTFNPKWNEQYTWEVYDP-CTVITLGVFDNCHLGGGE 691 (1026)
Q Consensus 613 ~L~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~g~~~~~T~~~~~t~~P~wne~~~~~v~~~-~~~l~i~v~d~~~~~~~~ 691 (1026)
+|+|+|++|++|+.+ +..+.+||||+|.+++..++|++++++.||.|||.|.|.+... ...|.|+|||++.++
T Consensus 1 ~L~v~vi~a~~L~~~---d~~~~~DPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~~~--- 74 (123)
T cd04025 1 RLRCHVLEARDLAPK---DRNGTSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEGADSPLSVEVWDWDLVS--- 74 (123)
T ss_pred CEEEEEEEeeCCCCC---CCCCCcCceEEEEECCEEEeceeecCCCCCccCcEEEEEcCCCCCCEEEEEEEECCCCC---
Confidence 489999999999987 5567899999999999999999999999999999999999876 567999999998765
Q ss_pred ccCCCCCCCCCeeEEEEEEcccccCCceEeeeEeeeecCCC---CCccCcEEEEEEE
Q 001696 692 KQNGSSAVRDSRIGKVRIRLSTLEAHRIYTHSYPLLVLHPH---GVKKMGELQLAIR 745 (1026)
Q Consensus 692 ~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~---g~~~~G~i~l~~~ 745 (1026)
++++||.+.++|+++..+.....||.|...... ..+..|.|++.++
T Consensus 75 --------~~~~iG~~~~~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~~G~l~~~~~ 123 (123)
T cd04025 75 --------KNDFLGKVVFSIQTLQQAKQEEGWFRLLPDPRAEEESGGNLGSLRLKVR 123 (123)
T ss_pred --------CCcEeEEEEEEHHHcccCCCCCCEEECCCCCCCCccccCceEEEEEEeC
Confidence 789999999999999877667899999854322 1233688888763
No 58
>PF04842 DUF639: Plant protein of unknown function (DUF639); InterPro: IPR006927 The sequences in this family are plant proteins of unknown function.
Probab=99.72 E-value=4.1e-17 Score=185.29 Aligned_cols=183 Identities=22% Similarity=0.333 Sum_probs=151.3
Q ss_pred hhhHHHHHHHHHHHHhHHHHHHHhhccccccCchhHHHHHHHHHHHHHhccc--hHHHHHHHHHHHHhhcccc-CCCCCC
Q 001696 818 RRSKANFFRVMSLLSGMISVSRWFTDICNWRNPVTAVLVHILFLILIWYPEL--ILPTVFLYMFLIGLWNYRF-RPRHPP 894 (1026)
Q Consensus 818 ~~~~~n~~Rl~~~~~~~~~~~~~i~~~~~W~~p~~s~~~~~~~~~~~~~p~l--~lp~~~l~l~~~~~~~~~~-~~~~p~ 894 (1026)
.-+-+|+.-|++++.|+..+..+++.+.+|++|.+|+.+++++.+++|..|+ ++|.++++++++|+|..+. +.+
T Consensus 483 eGI~tNvav~kELL~Pl~~i~~~~~~l~~We~P~kt~~Fl~~~~~iI~r~wl~Y~~p~~Ll~~a~~Ml~~r~~~~~g--- 559 (683)
T PF04842_consen 483 EGIDTNVAVMKELLFPLIEIAKWLQKLASWEEPLKTLVFLALFLYIIYRGWLGYIFPAFLLFSAVFMLWLRYQGRLG--- 559 (683)
T ss_pred cCCccHHHHHHhccccHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC---
Confidence 3445799999999999999999999999999999999999999999999987 7999999999999997665 322
Q ss_pred CCCCCccccccCCCCCCCcccCCCCCCCChhHHHHHHHHHHHHHhhHHHHHHHHHhhhHhHhhhccccCchhHHHHHHHH
Q 001696 895 HMDTKLSWAEAVHPDELDEEFDTFPTSKTHDIVRIRYDRLRSVAGRIQTVVGDIATQGERFQSLLSWRDPRATALFILFS 974 (1026)
Q Consensus 895 ~~~~~~~~~~~~~~~e~~~e~~~~~~~~~~~~~~~r~~~l~~~~~~vQ~~l~~~a~~le~~~~l~~w~~p~~t~~~~~~l 974 (1026)
...++.. ....++.+..+++-++|+.+.++++.|+.++.+|.|+|+++.|..|++|..+++++
T Consensus 560 ---------------~~~~~v~--V~~pP~~nTvEqilalQ~Ais~~E~~iQ~~NI~LLKiRsllls~~PqaT~~Va~~L 622 (683)
T PF04842_consen 560 ---------------KSFGEVT--VRDPPPKNTVEQILALQEAISQLEEYIQAANIVLLKIRSLLLSKFPQATNKVALAL 622 (683)
T ss_pred ---------------CccceEE--ecCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 1122222 34456678888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhHHHHHHHhhhhh-cCCCCCCCCCC----chhhhhhcCCC
Q 001696 975 LCAAMVLYTTPFKVVALLAGLYYL-RHPRFRSKLPS----VPSNFFKRMPA 1020 (1026)
Q Consensus 975 ~~~~i~l~~iP~r~i~l~~g~~~~-r~P~~~~~~p~----~~~~~~~r~P~ 1020 (1026)
+++|+++.|+|+||++++..+..+ |+=.||+.+-. .+-.+|-++|.
T Consensus 623 l~~A~~LavvP~kyil~~v~l~~FTre~~~Rr~s~er~~RRlrEWW~sIPA 673 (683)
T PF04842_consen 623 LGLAAVLAVVPFKYILLFVFLEVFTRESPFRRESSERFNRRLREWWDSIPA 673 (683)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhhCCc
Confidence 999999999999999999888822 22224433221 35566667774
No 59
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=99.72 E-value=2.7e-17 Score=156.04 Aligned_cols=119 Identities=25% Similarity=0.357 Sum_probs=100.4
Q ss_pred ceEEEEeecCCCccCCCCCCCCCEEEEEeC-CceeeeccCCCCCCcccceeEEEeccCCCCCccceEEEEEeeCCCCCCC
Q 001696 2 KLVVEVVDAYDLMPKDGEGSASPFAEVDFL-NQLSKTKTIPKNLNPVWNQKLLFDFDQTKSHNHLRIEVSIYHHERRPIP 80 (1026)
Q Consensus 2 ~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~-~~~~~T~~~~~t~nP~Wne~f~f~~~~~~~~~~~~L~~~V~d~d~~~~~ 80 (1026)
.|+|+|++|++|+..+..|.+||||+++++ .+.++|+++++++||.|||+|.|.+.. . ..|.|+|||++.....
T Consensus 1 ~l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~-~----~~l~i~V~d~~~~~~~ 75 (123)
T cd08382 1 KVRLTVLCADGLAKRDLFRLPDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLTVGP-S----SIITIQVFDQKKFKKK 75 (123)
T ss_pred CeEEEEEEecCCCccCCCCCCCcEEEEEECCccceEccEEcCCCCCcccceEEEEeCC-C----CEEEEEEEECCCCCCC
Confidence 489999999999999988999999999996 678999999999999999999999865 2 6999999995553211
Q ss_pred CCccceeEEecCccccccCCceeEEeecccccc--ccccccccceeE
Q 001696 81 GRHFLGRVRIPCSNLVRKGEEVYQRFPLEKKWF--LSSVKGEVGLKI 125 (1026)
Q Consensus 81 ~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~--~~~~~G~l~l~~ 125 (1026)
.|+|||++.+++.++.........||+|++... .+.+.|+|.+++
T Consensus 76 ~d~~lG~~~i~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~G~v~~~~ 122 (123)
T cd08382 76 DQGFLGCVRIRANAVLPLKDTGYQRLDLRKLKKSDNLSVRGKIVVSL 122 (123)
T ss_pred CCceEeEEEEEHHHccccCCCccceeEeecCCCCCCceEeeEEEEEe
Confidence 268999999999999866554578999977653 567789998875
No 60
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=99.72 E-value=3.6e-17 Score=154.56 Aligned_cols=114 Identities=24% Similarity=0.371 Sum_probs=97.6
Q ss_pred eEEEEeecCCCccCCCCCCCCCEEEEEeC---CceeeeccCCCCCCcccceeEEEeccCCCCCccceEEEEEeeCCCCCC
Q 001696 3 LVVEVVDAYDLMPKDGEGSASPFAEVDFL---NQLSKTKTIPKNLNPVWNQKLLFDFDQTKSHNHLRIEVSIYHHERRPI 79 (1026)
Q Consensus 3 L~V~v~~a~~L~~~~~~g~~dpyv~v~~~---~~~~~T~~~~~t~nP~Wne~f~f~~~~~~~~~~~~L~~~V~d~d~~~~ 79 (1026)
|+|+|++|++|+..+..+.+||||+|++. ..+++|++++++.||+|||+|.|.+.... ...|.|+|||++. .
T Consensus 2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~~---~~~l~v~v~d~d~--~ 76 (119)
T cd04036 2 LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQV---KNVLELTVMDEDY--V 76 (119)
T ss_pred eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCccc---CCEEEEEEEECCC--C
Confidence 78999999999988888999999999995 36789999999999999999999987653 2579999999554 2
Q ss_pred CCCccceeEEecCccccccCCceeEEeeccccccccccccccceeEEec
Q 001696 80 PGRHFLGRVRIPCSNLVRKGEEVYQRFPLEKKWFLSSVKGEVGLKIYIS 128 (1026)
Q Consensus 80 ~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~ 128 (1026)
++++||++.+++.++.... ....||+|.+.+ .|+|++++.+.
T Consensus 77 -~~~~iG~~~~~l~~l~~g~-~~~~~~~L~~~~-----~g~l~~~~~~~ 118 (119)
T cd04036 77 -MDDHLGTVLFDVSKLKLGE-KVRVTFSLNPQG-----KEELEVEFLLE 118 (119)
T ss_pred -CCcccEEEEEEHHHCCCCC-cEEEEEECCCCC-----CceEEEEEEee
Confidence 7899999999999987654 488899998753 78999888753
No 61
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.72 E-value=1.1e-16 Score=154.67 Aligned_cols=123 Identities=32% Similarity=0.517 Sum_probs=106.0
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCe-------eeEeeeecCCCCCeEeEEEEEEecCCCCCeEEEEEEeCCCCC
Q 001696 287 LYVRVVKAKDLPPSSITGSCDPYVEVKMGNY-------KGRTKHFEKRMNPEWNQVFAFSKERIQSSMLEVFLKDKEMVG 359 (1026)
Q Consensus 287 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~-------~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~v~V~d~~~~~ 359 (1026)
|+|+|++|++|+..+..|.+||||+|.+.+. +.+|++++++.||.|||+|.|.+... ...|.|+|||++.++
T Consensus 2 L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~-~~~l~~~v~d~~~~~ 80 (133)
T cd04033 2 LRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPR-EHRLLFEVFDENRLT 80 (133)
T ss_pred EEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCC-CCEEEEEEEECCCCC
Confidence 7899999999999998889999999999764 47899999999999999999998654 468999999999999
Q ss_pred CCceeEEEEEEccccCCCCCCC-CCCCCEEEEeecCCCCCcccceEEEEEEe
Q 001696 360 RDDYLGRVAFDLNEVPTRVPPD-SPLAPQWYRLEDRRGEGKVRGQTMLAIWM 410 (1026)
Q Consensus 360 ~d~~lG~~~i~l~~l~~~~~~~-~~~~~~w~~L~~~~~~~~~~G~i~l~~~~ 410 (1026)
++++||++.+++.++....+.+ ......||+|+.....++..|+|++++.|
T Consensus 81 ~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~G~l~~~~~~ 132 (133)
T cd04033 81 RDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSSKSRVKGHLRLYMAY 132 (133)
T ss_pred CCCeeEEEEEEHHHCCCcCccccccccchheeeeecCCCCcceeEEEEEEee
Confidence 9999999999999998764432 23456999999876556789999999876
No 62
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=99.72 E-value=1e-16 Score=151.58 Aligned_cols=117 Identities=32% Similarity=0.497 Sum_probs=100.2
Q ss_pred EEEEEEEecCCCCCccCCCCCCcCcEEEEEECCEE-EEeeeecCCCCceeecEEEEEeeCCCCEEEEEEEeCCCCCCCCc
Q 001696 614 LEVGILGAQGLLPMKMKDGRGSTDAYCIAKYGQKW-VRTRTILDTFNPKWNEQYTWEVYDPCTVITLGVFDNCHLGGGEK 692 (1026)
Q Consensus 614 L~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~g~~~-~~T~~~~~t~~P~wne~~~~~v~~~~~~l~i~v~d~~~~~~~~~ 692 (1026)
|.|.|++|++|+++ +..|.+||||++++++.. .||++++++.||.|||.|.|.+......|.|.|||++.++
T Consensus 2 l~v~vi~a~~L~~~---d~~g~~DPYv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~~~~~l~v~v~d~~~~~---- 74 (121)
T cd04054 2 LYIRIVEGKNLPAK---DITGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHLPPGFHTVSFYVLDEDTLS---- 74 (121)
T ss_pred EEEEEEEeeCCcCC---CCCCCCCceEEEEECCEeeeeeeeEcCCCCCcccceEEEeeCCCCCEEEEEEEECCCCC----
Confidence 78999999999987 667899999999998764 7999999999999999999999877789999999999865
Q ss_pred cCCCCCCCCCeeEEEEEEcccccCC-ceEeeeEeeeecCCCCCccCcEEEEEEE
Q 001696 693 QNGSSAVRDSRIGKVRIRLSTLEAH-RIYTHSYPLLVLHPHGVKKMGELQLAIR 745 (1026)
Q Consensus 693 ~~~~~~~~~~~lG~~~i~l~~l~~~-~~~~~~~~L~~~~~~g~~~~G~i~l~~~ 745 (1026)
+|++||++.+++.++..+ .....|++|...+..+. ..|+|+|.++
T Consensus 75 -------~d~~iG~~~~~~~~~~~~~~~~~~W~~L~~~~~~~~-~~G~i~l~~~ 120 (121)
T cd04054 75 -------RDDVIGKVSLTREVISAHPRGIDGWMNLTEVDPDEE-VQGEIHLELS 120 (121)
T ss_pred -------CCCEEEEEEEcHHHhccCCCCCCcEEECeeeCCCCc-cccEEEEEEE
Confidence 799999999999998754 34689999986544332 4699988764
No 63
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=99.72 E-value=6.5e-17 Score=154.13 Aligned_cols=119 Identities=18% Similarity=0.324 Sum_probs=101.9
Q ss_pred ceEEEEeecCCCccCCCCCCCCCEEEEEeCCceeeeccCCCCCCcccceeEEEeccCCCCCccceEEEEEeeCCCCCCCC
Q 001696 2 KLVVEVVDAYDLMPKDGEGSASPFAEVDFLNQLSKTKTIPKNLNPVWNQKLLFDFDQTKSHNHLRIEVSIYHHERRPIPG 81 (1026)
Q Consensus 2 ~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~T~~~~~t~nP~Wne~f~f~~~~~~~~~~~~L~~~V~d~d~~~~~~ 81 (1026)
.|+|+|++|++|...+..|.+||||++.++++.++|+++++|.||+|||.|.|.+.+.. ..|.|+|||++. . +
T Consensus 4 ~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~----~~l~i~V~d~~~-~--~ 76 (126)
T cd04046 4 VTQVHVHSAEGLSKQDSGGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYRKKPR----SPIKIQVWNSNL-L--C 76 (126)
T ss_pred EEEEEEEeCcCCCCCCCCCCcCccEEEEECCEEEEeCccCCCCCCcccceEEEEecCCC----CEEEEEEEECCC-C--C
Confidence 58999999999999888899999999999999999999999999999999999887653 689999999543 2 5
Q ss_pred CccceeEEecCccccccCCceeEEeeccccc--cccccccccceeEEecCC
Q 001696 82 RHFLGRVRIPCSNLVRKGEEVYQRFPLEKKW--FLSSVKGEVGLKIYISPQ 130 (1026)
Q Consensus 82 d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~--~~~~~~G~l~l~~~~~~~ 130 (1026)
|+|||++.+++.++.. ....||+|+.+. ..+++.|+|.+++++.+.
T Consensus 77 d~~lG~~~~~l~~~~~---~~~~~~~l~~~~~~~~~~~~G~i~~~~~~~~~ 124 (126)
T cd04046 77 DEFLGQATLSADPNDS---QTLRTLPLRKRGRDAAGEVPGTISVKVTSSDD 124 (126)
T ss_pred CCceEEEEEecccCCC---cCceEEEcccCCCCCCCCCCCEEEEEEEEccc
Confidence 8999999999987542 356788996543 667899999999988754
No 64
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=99.71 E-value=2e-16 Score=150.84 Aligned_cols=121 Identities=21% Similarity=0.300 Sum_probs=101.7
Q ss_pred ceEEEEEEEEecCCCCCccCCCCCCcCcEEEEEECCEEEEeeeecCCCCceeecEEEEEeeCCCCEEEEEEEeCCCCCCC
Q 001696 611 VGILEVGILGAQGLLPMKMKDGRGSTDAYCIAKYGQKWVRTRTILDTFNPKWNEQYTWEVYDPCTVITLGVFDNCHLGGG 690 (1026)
Q Consensus 611 ~g~L~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~g~~~~~T~~~~~t~~P~wne~~~~~v~~~~~~l~i~v~d~~~~~~~ 690 (1026)
.+.|+|+|++|++|... +..|.+||||++.++++.++|++++++.||.|||.|.|.+.++...|.|+|||++.+
T Consensus 2 ~~~~~V~v~~A~~L~~~---d~~g~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~i~V~d~~~~--- 75 (126)
T cd04046 2 QVVTQVHVHSAEGLSKQ---DSGGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYRKKPRSPIKIQVWNSNLL--- 75 (126)
T ss_pred cEEEEEEEEeCcCCCCC---CCCCCcCccEEEEECCEEEEeCccCCCCCCcccceEEEEecCCCCEEEEEEEECCCC---
Confidence 36899999999999986 667899999999999999999999999999999999999988888999999998864
Q ss_pred CccCCCCCCCCCeeEEEEEEcccccCCceEeeeEeeeecC-CCCCccCcEEEEEEEEee
Q 001696 691 EKQNGSSAVRDSRIGKVRIRLSTLEAHRIYTHSYPLLVLH-PHGVKKMGELQLAIRFTI 748 (1026)
Q Consensus 691 ~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~-~~g~~~~G~i~l~~~f~~ 748 (1026)
.|++||.+.+++.++..+. .+||+|.... ....+..|+|.+++.+.+
T Consensus 76 ---------~d~~lG~~~~~l~~~~~~~--~~~~~l~~~~~~~~~~~~G~i~~~~~~~~ 123 (126)
T cd04046 76 ---------CDEFLGQATLSADPNDSQT--LRTLPLRKRGRDAAGEVPGTISVKVTSSD 123 (126)
T ss_pred ---------CCCceEEEEEecccCCCcC--ceEEEcccCCCCCCCCCCCEEEEEEEEcc
Confidence 4899999999999875444 6889996322 122344799999887643
No 65
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=99.71 E-value=1.7e-16 Score=150.24 Aligned_cols=118 Identities=30% Similarity=0.613 Sum_probs=105.0
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeEeeeecCCCCCeEeEEEEEEecCCCCCeEEEEEEeCCCCCCCcee
Q 001696 285 SYLYVRVVKAKDLPPSSITGSCDPYVEVKMGNYKGRTKHFEKRMNPEWNQVFAFSKERIQSSMLEVFLKDKEMVGRDDYL 364 (1026)
Q Consensus 285 ~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~v~V~d~~~~~~d~~l 364 (1026)
|.|.|+|++|++|+..+..+.+||||+|.+++...+|++++++.||.|||+|.|.+.+. ...|.|+|||++..+++++|
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~~~~~~~-~~~l~~~v~d~~~~~~~~~i 79 (119)
T cd08377 1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPIKDI-HDVLEVTVYDEDKDKKPEFL 79 (119)
T ss_pred CEEEEEEEeeeCCCCCCCCCCCCcEEEEEECCEeeecceecCCcCCccCcEEEEEecCc-CCEEEEEEEECCCCCCCcee
Confidence 47999999999999999888999999999999889999999999999999999998664 47899999999998899999
Q ss_pred EEEEEEccccCCCCCCCCCCCCEEEEeecCCCCCcccceEEEEEEe
Q 001696 365 GRVAFDLNEVPTRVPPDSPLAPQWYRLEDRRGEGKVRGQTMLAIWM 410 (1026)
Q Consensus 365 G~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~ 410 (1026)
|++.+++.++..+. ..||.|......++..|+|.+++.+
T Consensus 80 G~~~~~l~~~~~~~-------~~~~~l~~~~~~~~~~G~i~l~~~~ 118 (119)
T cd08377 80 GKVAIPLLSIKNGE-------RKWYALKDKKLRTRAKGSILLEMDV 118 (119)
T ss_pred eEEEEEHHHCCCCC-------ceEEECcccCCCCceeeEEEEEEEe
Confidence 99999999986542 2899998876555689999998865
No 66
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=99.71 E-value=8.6e-17 Score=152.83 Aligned_cols=117 Identities=28% Similarity=0.528 Sum_probs=100.6
Q ss_pred eEEEEEEEEecCCCCCccCC---CCCCcCcEEEEEECCEEEEeeeecCCCCceeecEEEEEeeC-CCCEEEEEEEeCCCC
Q 001696 612 GILEVGILGAQGLLPMKMKD---GRGSTDAYCIAKYGQKWVRTRTILDTFNPKWNEQYTWEVYD-PCTVITLGVFDNCHL 687 (1026)
Q Consensus 612 g~L~v~v~~a~~L~~~~~~~---~~~~~dpyv~v~~g~~~~~T~~~~~t~~P~wne~~~~~v~~-~~~~l~i~v~d~~~~ 687 (1026)
|.|+|.|++|+||+.++... ..|.+||||++++++..++|++++++.||.|||.|.|.+.. +...|.|+|||++..
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v~d~~~~ 80 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEAVVDEVPGQELEIELFDEDPD 80 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECCEeEEccccCCCCCCcccceEEEEeCCCCCCEEEEEEEecCCC
Confidence 67999999999999874210 14689999999999999999999999999999999999986 477899999998863
Q ss_pred CCCCccCCCCCCCCCeeEEEEEEcccccCCceEeeeEeeeecCCCCCccCcEEEEEEEE
Q 001696 688 GGGEKQNGSSAVRDSRIGKVRIRLSTLEAHRIYTHSYPLLVLHPHGVKKMGELQLAIRF 746 (1026)
Q Consensus 688 ~~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f 746 (1026)
++++||++.|+|+++..+.....||+|... ..|+|+|+++|
T Consensus 81 ------------~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~------~~G~~~~~~~~ 121 (121)
T cd08391 81 ------------KDDFLGRLSIDLGSVEKKGFIDEWLPLEDV------KSGRLHLKLEW 121 (121)
T ss_pred ------------CCCcEEEEEEEHHHhcccCccceEEECcCC------CCceEEEEEeC
Confidence 589999999999999887778999999621 45999998865
No 67
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.71 E-value=6.8e-17 Score=150.42 Aligned_cols=103 Identities=28% Similarity=0.388 Sum_probs=88.7
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECC-------eeeEeeeecCCCCCeEeEEEEEEecC---CCCCeEEEEEEeCC
Q 001696 287 LYVRVVKAKDLPPSSITGSCDPYVEVKMGN-------YKGRTKHFEKRMNPEWNQVFAFSKER---IQSSMLEVFLKDKE 356 (1026)
Q Consensus 287 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~-------~~~kT~~~~~t~nP~wne~f~f~v~~---~~~~~L~v~V~d~~ 356 (1026)
|+|+|++|++|+..+ .|.+||||+|++.+ ++++|+++.+++||+|||+|.|.+.. +....|.|.|||++
T Consensus 2 L~V~Vi~A~~L~~~d-~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~d 80 (120)
T cd08395 2 VTVKVVAANDLKWQT-TGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDYC 80 (120)
T ss_pred EEEEEEECcCCCccc-CCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEec
Confidence 899999999999887 48999999999832 25689999999999999999999853 34567999999999
Q ss_pred CCCCCceeEEEEEEccccCCCCCCCCCCCCEEEEeecCC
Q 001696 357 MVGRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLEDRR 395 (1026)
Q Consensus 357 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~ 395 (1026)
..+++++||++.+++.++..+.... .|++|....
T Consensus 81 ~~~~dd~IG~~~l~l~~~~~~~~~~-----~w~~L~~~~ 114 (120)
T cd08395 81 FARDDRLVGVTVLQLRDIAQAGSCA-----CWLPLGRRI 114 (120)
T ss_pred ccCCCCEEEEEEEEHHHCcCCCcEE-----EEEECcCcc
Confidence 8888999999999999999776544 899997653
No 68
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=99.71 E-value=1.6e-16 Score=151.09 Aligned_cols=118 Identities=30% Similarity=0.513 Sum_probs=101.9
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeEeeeecCCCCCeEeEEEEEEecCCCCCeEEEEEEeCCCCCCCceeE
Q 001696 286 YLYVRVVKAKDLPPSSITGSCDPYVEVKMGNYKGRTKHFEKRMNPEWNQVFAFSKERIQSSMLEVFLKDKEMVGRDDYLG 365 (1026)
Q Consensus 286 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~v~V~d~~~~~~d~~lG 365 (1026)
+|+|+|++|++|+.++..+.+||||+|.+++.+.+|++++++.||.|||+|.|.+.......|.|+|||++.++++++||
T Consensus 1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~~~~~~~iG 80 (123)
T cd04025 1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEGADSPLSVEVWDWDLVSKNDFLG 80 (123)
T ss_pred CEEEEEEEeeCCCCCCCCCCcCceEEEEECCEEEeceeecCCCCCccCcEEEEEcCCCCCCEEEEEEEECCCCCCCcEeE
Confidence 38999999999999998889999999999999999999999999999999999987765678999999999999999999
Q ss_pred EEEEEccccCCCCCCCCCCCCEEEEeecCCCC----CcccceEEEEE
Q 001696 366 RVAFDLNEVPTRVPPDSPLAPQWYRLEDRRGE----GKVRGQTMLAI 408 (1026)
Q Consensus 366 ~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~----~~~~G~i~l~~ 408 (1026)
++.+++.++....... .||.|...... ++..|.|.+.+
T Consensus 81 ~~~~~l~~l~~~~~~~-----~w~~L~~~~~~~~~~~~~~G~l~~~~ 122 (123)
T cd04025 81 KVVFSIQTLQQAKQEE-----GWFRLLPDPRAEEESGGNLGSLRLKV 122 (123)
T ss_pred EEEEEHHHcccCCCCC-----CEEECCCCCCCCccccCceEEEEEEe
Confidence 9999999997654333 89999864322 24678888765
No 69
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=99.71 E-value=3e-16 Score=149.39 Aligned_cols=120 Identities=22% Similarity=0.392 Sum_probs=100.4
Q ss_pred eeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-eeEeeeecCCCCCeEeEEEEEEecCCCCCeEEEEEEeCCCCCCCc
Q 001696 284 MSYLYVRVVKAKDLPPSSITGSCDPYVEVKMGNY-KGRTKHFEKRMNPEWNQVFAFSKERIQSSMLEVFLKDKEMVGRDD 362 (1026)
Q Consensus 284 ~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~-~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~v~V~d~~~~~~d~ 362 (1026)
...|+|+|++|+||+.. +.+||||+|.+++. ..+|++ +++.||.|||+|.|.+.......+.|.|||.+..++|+
T Consensus 3 ~~~L~V~Vi~A~~L~~~---~~~DPYv~v~l~~~~~~kT~v-~~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~~~~d~ 78 (126)
T cd08400 3 VRSLQLNVLEAHKLPVK---HVPHPYCVISLNEVKVARTKV-REGPNPVWSEEFVFDDLPPDVNSFTISLSNKAKRSKDS 78 (126)
T ss_pred eeEEEEEEEEeeCCCCC---CCCCeeEEEEECCEeEEEeec-CCCCCCccCCEEEEecCCCCcCEEEEEEEECCCCCCCC
Confidence 45799999999999875 46899999999885 468887 46899999999999875554467999999999999999
Q ss_pred eeEEEEEEccccCCCCCCCCCCCCEEEEeecCCC-CCcccceEEEEEEecc
Q 001696 363 YLGRVAFDLNEVPTRVPPDSPLAPQWYRLEDRRG-EGKVRGQTMLAIWMGT 412 (1026)
Q Consensus 363 ~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~-~~~~~G~i~l~~~~~~ 412 (1026)
+||++.++|.++..+...+ .||+|..... .....|+|+++++|..
T Consensus 79 ~iG~v~i~l~~l~~~~~~~-----~W~~L~~~~~~~~~~~G~i~l~l~~~~ 124 (126)
T cd08400 79 EIAEVTVQLSKLQNGQETD-----EWYPLSSASPLKGGEWGSLRIRARYSH 124 (126)
T ss_pred eEEEEEEEHhHccCCCccc-----EeEEcccCCCCCCCcCcEEEEEEEEEc
Confidence 9999999999988765444 8999998653 2357799999998854
No 70
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=99.70 E-value=1.7e-16 Score=152.31 Aligned_cols=123 Identities=30% Similarity=0.475 Sum_probs=105.3
Q ss_pred eEEEEEEEEeecCCCCCC--CCCCCcEEEEEECCeeeEeeeecCCCCCeEeEEEEEEecCCCCCeEEEEEEeCCCCCCCc
Q 001696 285 SYLYVRVVKAKDLPPSSI--TGSCDPYVEVKMGNYKGRTKHFEKRMNPEWNQVFAFSKERIQSSMLEVFLKDKEMVGRDD 362 (1026)
Q Consensus 285 ~~L~V~v~~a~~L~~~d~--~g~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~v~V~d~~~~~~d~ 362 (1026)
|.|+|+|++|++|+..+. .+.+||||+|.+++.+.+|++++++.||.|||+|.|.+.......|.|+|||++..++++
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~~~~kT~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~~~~~~ 80 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKDRFAGKD 80 (128)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEECCEEEecceecCCcCCccCCcEEEEecCCCCCEEEEEEEECCCCCCCC
Confidence 579999999999999888 889999999999999999999999999999999999998766789999999999988999
Q ss_pred eeEEEEEEccccCCCCCCCCCCCCEEEEeecCCCC--CcccceEEEEEE
Q 001696 363 YLGRVAFDLNEVPTRVPPDSPLAPQWYRLEDRRGE--GKVRGQTMLAIW 409 (1026)
Q Consensus 363 ~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~--~~~~G~i~l~~~ 409 (1026)
+||++.+++.++...... .....||.|.+.... ....|+|++.+.
T Consensus 81 ~lG~~~i~l~~~~~~~~~--~~~~~w~~L~~~~~~~~~~~~G~i~l~~~ 127 (128)
T cd04024 81 YLGEFDIALEEVFADGKT--GQSDKWITLKSTRPGKTSVVSGEIHLQFS 127 (128)
T ss_pred cceEEEEEHHHhhccccc--CccceeEEccCcccCccccccceEEEEEE
Confidence 999999999998742111 123499999876432 347899999874
No 71
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=99.70 E-value=1.3e-16 Score=151.95 Aligned_cols=115 Identities=32% Similarity=0.608 Sum_probs=100.6
Q ss_pred cc-eeEeeeccccceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC---eeeEeeeecCCCCCeEeEEEEEEecCC--C
Q 001696 271 GE-RFTSTYDLVEQMSYLYVRVVKAKDLPPSSITGSCDPYVEVKMGN---YKGRTKHFEKRMNPEWNQVFAFSKERI--Q 344 (1026)
Q Consensus 271 g~-~~~~~y~~~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~---~~~kT~~~~~t~nP~wne~f~f~v~~~--~ 344 (1026)
|+ ++++.|+. ..+.|.|+|++|+||+..+..|.+||||+|.+.. ..++|++++++.||+|||+|.|.+... .
T Consensus 3 G~l~~sl~y~~--~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~ 80 (124)
T cd08387 3 GELHFSLEYDK--DMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPPQELP 80 (124)
T ss_pred CEEEEEEEECC--CCCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEeCCHHHhC
Confidence 44 78889977 5689999999999999999899999999999942 468999999999999999999997533 3
Q ss_pred CCeEEEEEEeCCCCCCCceeEEEEEEccccCCCCCCCCCCCCEEEEee
Q 001696 345 SSMLEVFLKDKEMVGRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLE 392 (1026)
Q Consensus 345 ~~~L~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~ 392 (1026)
...|.|+|||++.++++++||++.+++.++......+ .||+|.
T Consensus 81 ~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~~-----~W~~l~ 123 (124)
T cd08387 81 KRTLEVLLYDFDQFSRDECIGVVELPLAEVDLSEKLD-----LWRKIQ 123 (124)
T ss_pred CCEEEEEEEECCCCCCCceeEEEEEecccccCCCCcc-----eEEECc
Confidence 5689999999999999999999999999998765444 899986
No 72
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.70 E-value=1.3e-16 Score=152.20 Aligned_cols=121 Identities=31% Similarity=0.376 Sum_probs=100.9
Q ss_pred ceEEEEEEEEecCCCCCccCCCCCCcCcEEEEEECC--EEEEeeeecCCCCceeecEEEEEeeCCCCEEEEEEEeCCCCC
Q 001696 611 VGILEVGILGAQGLLPMKMKDGRGSTDAYCIAKYGQ--KWVRTRTILDTFNPKWNEQYTWEVYDPCTVITLGVFDNCHLG 688 (1026)
Q Consensus 611 ~g~L~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~g~--~~~~T~~~~~t~~P~wne~~~~~v~~~~~~l~i~v~d~~~~~ 688 (1026)
+|.|+|.|++|++|+..+ ...+.+||||++.+++ ..++|+++.++.||.|||.|.|.+....+.|.|+|||++..+
T Consensus 1 ~g~l~v~v~~a~~L~~~~--~~~~~~dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~~~~~v~~~~~~l~~~v~d~~~~~ 78 (124)
T cd04044 1 IGVLAVTIKSARGLKGSD--IIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVNSLTEPLNLTVYDFNDKR 78 (124)
T ss_pred CeEEEEEEEcccCCCccc--ccCCCCCCeEEEEECCCCcceEeeeecCCCCCcceEEEEEEeCCCCCEEEEEEEecCCCC
Confidence 489999999999998642 2346799999999987 789999999999999999999999866889999999998754
Q ss_pred CCCccCCCCCCCCCeeEEEEEEcccccCCceEe-eeEeeeecCCCCCccCcEEEEEEEEee
Q 001696 689 GGEKQNGSSAVRDSRIGKVRIRLSTLEAHRIYT-HSYPLLVLHPHGVKKMGELQLAIRFTI 748 (1026)
Q Consensus 689 ~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~-~~~~L~~~~~~g~~~~G~i~l~~~f~~ 748 (1026)
+|++||++.++|.++..+.... .+++|. .+.+..|+|+++++|.|
T Consensus 79 -----------~d~~iG~~~~~l~~l~~~~~~~~~~~~~~----~~~k~~G~i~~~l~~~p 124 (124)
T cd04044 79 -----------KDKLIGTAEFDLSSLLQNPEQENLTKNLL----RNGKPVGELNYDLRFFP 124 (124)
T ss_pred -----------CCceeEEEEEEHHHhccCccccCcchhhh----cCCccceEEEEEEEeCC
Confidence 7899999999999998776554 345553 23344699999999854
No 73
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=99.70 E-value=1.6e-16 Score=151.48 Aligned_cols=103 Identities=24% Similarity=0.418 Sum_probs=91.5
Q ss_pred ceEEEEEEEEecCCCCCccCCCCCCcCcEEEEEEC---CEEEEeeeecCCCCceeecEEEEEeeCC---CCEEEEEEEeC
Q 001696 611 VGILEVGILGAQGLLPMKMKDGRGSTDAYCIAKYG---QKWVRTRTILDTFNPKWNEQYTWEVYDP---CTVITLGVFDN 684 (1026)
Q Consensus 611 ~g~L~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~g---~~~~~T~~~~~t~~P~wne~~~~~v~~~---~~~l~i~v~d~ 684 (1026)
.|.|.|.|++|+||+++ +..|.+||||++.++ ....||++++++.||.|||.|.|.+... ...|.|+|||+
T Consensus 15 ~~~L~V~v~~a~~L~~~---d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~i~V~d~ 91 (124)
T cd08387 15 MGILNVKLIQARNLQPR---DFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPPQELPKRTLEVLLYDF 91 (124)
T ss_pred CCEEEEEEEEeeCCCCC---CCCCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEeCCHHHhCCCEEEEEEEEC
Confidence 47999999999999987 667889999999983 4569999999999999999999998753 56799999999
Q ss_pred CCCCCCCccCCCCCCCCCeeEEEEEEcccccCCceEeeeEeee
Q 001696 685 CHLGGGEKQNGSSAVRDSRIGKVRIRLSTLEAHRIYTHSYPLL 727 (1026)
Q Consensus 685 ~~~~~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~ 727 (1026)
+.++ ++++||.+.|+|+++..+...+.||+|.
T Consensus 92 ~~~~-----------~~~~iG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08387 92 DQFS-----------RDECIGVVELPLAEVDLSEKLDLWRKIQ 123 (124)
T ss_pred CCCC-----------CCceeEEEEEecccccCCCCcceEEECc
Confidence 8765 7899999999999998777889999985
No 74
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=99.70 E-value=1e-16 Score=150.70 Aligned_cols=113 Identities=24% Similarity=0.360 Sum_probs=97.9
Q ss_pred eeEeeeccccceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC------eeeEeeeecCCCCCeEeEEEEEEec--CCC
Q 001696 273 RFTSTYDLVEQMSYLYVRVVKAKDLPPSSITGSCDPYVEVKMGN------YKGRTKHFEKRMNPEWNQVFAFSKE--RIQ 344 (1026)
Q Consensus 273 ~~~~~y~~~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~------~~~kT~~~~~t~nP~wne~f~f~v~--~~~ 344 (1026)
++++.|+. ..+.|.|+|++|+||++++..|.+||||++.+.+ .+++|++++++.||+|||+|.|++. ++.
T Consensus 4 ~~sL~Y~~--~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~ 81 (124)
T cd08680 4 QIGLRYDS--GDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLY 81 (124)
T ss_pred EEEEEECC--CCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhh
Confidence 78899987 6689999999999999998888999999999853 3689999999999999999999984 345
Q ss_pred CCeEEEEEEeCCCCCCCceeEEEEEEccccCCCCCCCCCCCCEEEEe
Q 001696 345 SSMLEVFLKDKEMVGRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRL 391 (1026)
Q Consensus 345 ~~~L~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L 391 (1026)
+..|.|+|||++.++++++||++.|+|.++..... ....||+|
T Consensus 82 ~~~L~~~V~~~~~~~~~~~lG~~~i~L~~~~~~~~----~~~~Wy~l 124 (124)
T cd08680 82 QKTLQVDVCSVGPDQQEECLGGAQISLADFESSEE----MSTKWYNL 124 (124)
T ss_pred cCEEEEEEEeCCCCCceeEEEEEEEEhhhccCCCc----cccccccC
Confidence 78999999999999999999999999999965432 23489876
No 75
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=99.70 E-value=9.9e-17 Score=153.29 Aligned_cols=118 Identities=19% Similarity=0.353 Sum_probs=99.0
Q ss_pred ceEEEEeecCCCccCCCCCCCCCEEEEEeC-------------CceeeeccCCCCCCccc-ceeEEEeccCCCCCccceE
Q 001696 2 KLVVEVVDAYDLMPKDGEGSASPFAEVDFL-------------NQLSKTKTIPKNLNPVW-NQKLLFDFDQTKSHNHLRI 67 (1026)
Q Consensus 2 ~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~-------------~~~~~T~~~~~t~nP~W-ne~f~f~~~~~~~~~~~~L 67 (1026)
+..|++++|+||+ ++..|.+||||++++. +++++|+++++++||+| ||+|.|.+... ..|
T Consensus 2 ~~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~~~-----~~L 75 (137)
T cd08691 2 SFSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGLPT-----DVL 75 (137)
T ss_pred EEEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcCCC-----CEE
Confidence 5689999999997 7778999999999994 23789999999999999 99999998642 489
Q ss_pred EEEEeeCCCCCC-CCCccceeEEecCccccccCC--ceeEEeeccccccccccccccceeE
Q 001696 68 EVSIYHHERRPI-PGRHFLGRVRIPCSNLVRKGE--EVYQRFPLEKKWFLSSVKGEVGLKI 125 (1026)
Q Consensus 68 ~~~V~d~d~~~~-~~d~~lG~~~i~l~~l~~~~~--~~~~w~~L~~~~~~~~~~G~l~l~~ 125 (1026)
.|+|||++.... ..+++||++.|++.++..... ....||+|++++..+.++|+|.+++
T Consensus 76 ~v~V~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~k~~~~s~v~G~~~l~~ 136 (137)
T cd08691 76 EIEVKDKFAKSRPIIRRFLGKLSIPVQRLLERHAIGDQELSYTLGRRTPTDHVSGQLTFRF 136 (137)
T ss_pred EEEEEecCCCCCccCCceEEEEEEEHHHhcccccCCceEEEEECCcCCCCCcEEEEEEEEe
Confidence 999999543211 127999999999999976543 3778999999999999999999886
No 76
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=99.70 E-value=2.3e-16 Score=149.85 Aligned_cols=105 Identities=24% Similarity=0.369 Sum_probs=89.7
Q ss_pred EEEEEEEEeEecCCCCCC-CCCCcEEEEEEC-----CeEEEeeeecCCCCCCcccceeEEEeeCC--CcCeEEEEEEEcc
Q 001696 449 YLRVNVIEAQDIVPNDRN-RLPEGFVKVQVG-----NQVLKTKICPTPTTNPLWNEDLVFVAAEP--FEEQLFLTVEDRV 520 (1026)
Q Consensus 449 ~l~V~I~~a~~L~~~d~~-~~~dpyV~v~lg-----~~~~kT~~~~~~t~nP~wne~f~f~v~~~--~~~~L~i~V~d~d 520 (1026)
.|.|+|++|+||+.++.. +.+||||++++. ....||+++ +++.||+|||+|.|.+... ....|.|.|||.+
T Consensus 16 ~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~-~~t~nPvfNE~F~f~v~~~~l~~~~L~v~V~~~~ 94 (128)
T cd08392 16 CLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVK-KGTVNPVFNETLKYVVEADLLSSRQLQVSVWHSR 94 (128)
T ss_pred EEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccc-cCCCCCccceEEEEEcCHHHhCCcEEEEEEEeCC
Confidence 699999999999998875 889999999993 247799999 7999999999999998553 3569999999999
Q ss_pred CCCCCceeEEEEEeCcccccccCCCCccceeEEcc
Q 001696 521 HASKDEVLGKISLPLHIFEKRLDHRPVHSRWFNLE 555 (1026)
Q Consensus 521 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~ 555 (1026)
.++++++||++.|+|+++... +......+||+|.
T Consensus 95 ~~~~~~~lG~~~i~L~~~~~~-~~~~~~~~W~~l~ 128 (128)
T cd08392 95 TLKRRVFLGEVLIPLADWDFE-DTDSQRFLWYPLN 128 (128)
T ss_pred CCcCcceEEEEEEEcCCcccC-CCCccccceEECc
Confidence 889999999999999998643 2234678999984
No 77
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=99.69 E-value=1.4e-16 Score=149.57 Aligned_cols=101 Identities=18% Similarity=0.321 Sum_probs=87.5
Q ss_pred eEEEEEEEEecCCCCCccCCCCCCcCcEEEEEECC-----EEEEeeeecCCCCceeecEEEEEeeCC--CCEEEEEEEeC
Q 001696 612 GILEVGILGAQGLLPMKMKDGRGSTDAYCIAKYGQ-----KWVRTRTILDTFNPKWNEQYTWEVYDP--CTVITLGVFDN 684 (1026)
Q Consensus 612 g~L~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~g~-----~~~~T~~~~~t~~P~wne~~~~~v~~~--~~~l~i~v~d~ 684 (1026)
+.|.|+|++|+||+++ + .|.+||||++++.+ .+.||++++++.||.|||.|.|.+... ...|.|+|||.
T Consensus 12 ~~L~V~Vi~ar~L~~~---~-~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~ 87 (119)
T cd08685 12 RKLTLHVLEAKGLRST---N-SGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLVTVWNK 87 (119)
T ss_pred CEEEEEEEEEECCCCC---C-CCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhCCEEEEEEECC
Confidence 6899999999999987 5 67899999999853 467999999999999999999998653 45799999998
Q ss_pred CCCCCCCccCCCCCCCCCeeEEEEEEcccccCCceEeeeEee
Q 001696 685 CHLGGGEKQNGSSAVRDSRIGKVRIRLSTLEAHRIYTHSYPL 726 (1026)
Q Consensus 685 ~~~~~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L 726 (1026)
+..+ .++++||.+.|+|.++..+..+..||.|
T Consensus 88 ~~~~----------~~~~~lG~~~i~l~~~~~~~~~~~Wy~l 119 (119)
T cd08685 88 LSKS----------RDSGLLGCMSFGVKSIVNQKEISGWYYL 119 (119)
T ss_pred CCCc----------CCCEEEEEEEecHHHhccCccccceEeC
Confidence 8643 2478999999999999888878999986
No 78
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=99.69 E-value=2.4e-16 Score=151.02 Aligned_cols=115 Identities=28% Similarity=0.488 Sum_probs=99.4
Q ss_pred cc-eeEeeeccccceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeEeeeecCCCCCeEeEEEEEEecC--
Q 001696 271 GE-RFTSTYDLVEQMSYLYVRVVKAKDLPPSSITGSCDPYVEVKMGN-----YKGRTKHFEKRMNPEWNQVFAFSKER-- 342 (1026)
Q Consensus 271 g~-~~~~~y~~~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~-----~~~kT~~~~~t~nP~wne~f~f~v~~-- 342 (1026)
|+ ++++.|+. ..+.|.|+|++|+||+..+..+.+||||+|.+.+ .+++|++++++.||+|||+|.|.+..
T Consensus 3 G~l~~~l~y~~--~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~ 80 (127)
T cd04030 3 GRIQLTIRYSS--QRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEE 80 (127)
T ss_pred eEEEEEEEEeC--CCCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHH
Confidence 55 88999987 5689999999999999999888999999999963 57899999999999999999999843
Q ss_pred CCCCeEEEEEEeCCCC--CCCceeEEEEEEccccCCCCCCCCCCCCEEEEee
Q 001696 343 IQSSMLEVFLKDKEMV--GRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLE 392 (1026)
Q Consensus 343 ~~~~~L~v~V~d~~~~--~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~ 392 (1026)
+....|.|.|||.+.+ +++++||++.+++.++....... .||+|.
T Consensus 81 l~~~~l~i~v~~~~~~~~~~~~~iG~~~i~l~~l~~~~~~~-----~W~~L~ 127 (127)
T cd04030 81 LKRRTLDVAVKNSKSFLSREKKLLGQVLIDLSDLDLSKGFT-----QWYDLT 127 (127)
T ss_pred hcCCEEEEEEEECCcccCCCCceEEEEEEecccccccCCcc-----ceEECc
Confidence 3457899999999875 68999999999999997654433 899884
No 79
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=99.69 E-value=3e-16 Score=149.59 Aligned_cols=113 Identities=31% Similarity=0.493 Sum_probs=98.6
Q ss_pred eeEeeeccccceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC---eeeEeeeecCCCCCeEeEEEEEEecC--CCCCe
Q 001696 273 RFTSTYDLVEQMSYLYVRVVKAKDLPPSSITGSCDPYVEVKMGN---YKGRTKHFEKRMNPEWNQVFAFSKER--IQSSM 347 (1026)
Q Consensus 273 ~~~~~y~~~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~---~~~kT~~~~~t~nP~wne~f~f~v~~--~~~~~ 347 (1026)
.+++.|+. ..+.|.|+|++|+||+..+..+.+||||+|.+.+ .+++|++++++.||+|||+|.|.+.. .....
T Consensus 6 ~~~l~y~~--~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~ 83 (124)
T cd08385 6 QFSLDYDF--QSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSELGNKT 83 (124)
T ss_pred EEEEEEeC--CCCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHHHhCCCE
Confidence 78888977 4589999999999999999889999999999864 36799999999999999999999853 33568
Q ss_pred EEEEEEeCCCCCCCceeEEEEEEccccCCCCCCCCCCCCEEEEee
Q 001696 348 LEVFLKDKEMVGRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLE 392 (1026)
Q Consensus 348 L~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~ 392 (1026)
|.|+|||++.++++++||++.+++.++..+...+ .|++|+
T Consensus 84 l~~~V~d~d~~~~~~~lG~~~i~l~~~~~~~~~~-----~W~~l~ 123 (124)
T cd08385 84 LVFSVYDFDRFSKHDLIGEVRVPLLTVDLGHVTE-----EWRDLE 123 (124)
T ss_pred EEEEEEeCCCCCCCceeEEEEEecCcccCCCCcc-----eEEEcc
Confidence 9999999999999999999999999987654433 999986
No 80
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=99.69 E-value=2.8e-16 Score=149.79 Aligned_cols=117 Identities=24% Similarity=0.372 Sum_probs=97.2
Q ss_pred cc-eeEeeeccccceeEEEEEEEEeecCCCCCCC-CCCCcEEEEEECC---eeeEeeeecCCCCCeEeEEEEEE-ec--C
Q 001696 271 GE-RFTSTYDLVEQMSYLYVRVVKAKDLPPSSIT-GSCDPYVEVKMGN---YKGRTKHFEKRMNPEWNQVFAFS-KE--R 342 (1026)
Q Consensus 271 g~-~~~~~y~~~~~~~~L~V~v~~a~~L~~~d~~-g~~dpyv~v~~~~---~~~kT~~~~~t~nP~wne~f~f~-v~--~ 342 (1026)
|+ ++++.|+. ..+.|.|+|++|+||+..+.. |.+||||+|.+.+ ++.||++++++.||.|||+|.|. +. +
T Consensus 3 G~l~~~l~y~~--~~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~ 80 (128)
T cd08388 3 GTLFFSLRYNS--EKKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYNQ 80 (128)
T ss_pred eEEEEEEEEEC--CCCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHHH
Confidence 45 88999987 558999999999999998875 8899999999963 46799999999999999999994 42 3
Q ss_pred CCCCeEEEEEEeCCCCCCCceeEEEEEEccccCCCCCCCCCCCCEEEEee
Q 001696 343 IQSSMLEVFLKDKEMVGRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLE 392 (1026)
Q Consensus 343 ~~~~~L~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~ 392 (1026)
.....|.|+|||++.++++++||++.++|.++...... ....|++|+
T Consensus 81 ~~~~~L~~~V~d~d~~~~d~~lG~~~i~L~~l~~~~~~---~~~~~~~~~ 127 (128)
T cd08388 81 LQDLSLHFAVLSFDRYSRDDVIGEVVCPLAGADLLNEG---ELLVSREIQ 127 (128)
T ss_pred hCCCEEEEEEEEcCCCCCCceeEEEEEeccccCCCCCc---eEEEEEecc
Confidence 33468999999999999999999999999999765221 133788775
No 81
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.68 E-value=2.9e-16 Score=150.02 Aligned_cols=114 Identities=39% Similarity=0.657 Sum_probs=96.8
Q ss_pred cc-eeEeeeccccceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeEeeeecCCCCCeEeEEEEEEecC--
Q 001696 271 GE-RFTSTYDLVEQMSYLYVRVVKAKDLPPSSITGSCDPYVEVKMGN-----YKGRTKHFEKRMNPEWNQVFAFSKER-- 342 (1026)
Q Consensus 271 g~-~~~~~y~~~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~-----~~~kT~~~~~t~nP~wne~f~f~v~~-- 342 (1026)
|+ .+++.|+. ..+.|.|+|++|++|+..+..+.+||||+|.+.+ .+++|++++++.||+|||+|.|.+..
T Consensus 3 G~l~~~l~~~~--~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~ 80 (125)
T cd04031 3 GRIQIQLWYDK--VTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRE 80 (125)
T ss_pred EEEEEEEEEeC--CCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHH
Confidence 45 78888887 4589999999999999999888999999999975 46799999999999999999998533
Q ss_pred -CCCCeEEEEEEeCCCCCCCceeEEEEEEccccCCCCCCCCCCCCEEEEee
Q 001696 343 -IQSSMLEVFLKDKEMVGRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLE 392 (1026)
Q Consensus 343 -~~~~~L~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~ 392 (1026)
.....|.|+|||++.++++++||++.++|.+..... ...||+|+
T Consensus 81 ~l~~~~l~~~V~d~~~~~~~~~iG~~~i~l~~~~~~~------~~~W~~L~ 125 (125)
T cd04031 81 TLKERTLEVTVWDYDRDGENDFLGEVVIDLADALLDD------EPHWYPLQ 125 (125)
T ss_pred HhCCCEEEEEEEeCCCCCCCcEeeEEEEecccccccC------CcceEECc
Confidence 245789999999999989999999999999833221 23899985
No 82
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=99.68 E-value=3.7e-16 Score=147.65 Aligned_cols=113 Identities=27% Similarity=0.462 Sum_probs=98.6
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECC---eeeEeeeecCCCCCeEeEEEEEEecCCCCCeEEEEEEeCCCCCCCce
Q 001696 287 LYVRVVKAKDLPPSSITGSCDPYVEVKMGN---YKGRTKHFEKRMNPEWNQVFAFSKERIQSSMLEVFLKDKEMVGRDDY 363 (1026)
Q Consensus 287 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~---~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~v~V~d~~~~~~d~~ 363 (1026)
|.|+|++|++|+..+..+.+||||++.+++ .+.+|++++++.||+|||+|.|.+.......|.|+|||++.+ ++++
T Consensus 2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~~-~~~~ 80 (119)
T cd04036 2 LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQVKNVLELTVMDEDYV-MDDH 80 (119)
T ss_pred eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcccCCEEEEEEEECCCC-CCcc
Confidence 789999999999998888999999999964 578999999999999999999998765556899999999998 8999
Q ss_pred eEEEEEEccccCCCCCCCCCCCCEEEEeecCCCCCcccceEEEEEEe
Q 001696 364 LGRVAFDLNEVPTRVPPDSPLAPQWYRLEDRRGEGKVRGQTMLAIWM 410 (1026)
Q Consensus 364 lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~ 410 (1026)
||++.+++.++..+.... .|++|.... .|+|.+.+.+
T Consensus 81 iG~~~~~l~~l~~g~~~~-----~~~~L~~~~-----~g~l~~~~~~ 117 (119)
T cd04036 81 LGTVLFDVSKLKLGEKVR-----VTFSLNPQG-----KEELEVEFLL 117 (119)
T ss_pred cEEEEEEHHHCCCCCcEE-----EEEECCCCC-----CceEEEEEEe
Confidence 999999999998765544 899998642 5888887754
No 83
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.68 E-value=2.4e-16 Score=146.88 Aligned_cols=107 Identities=26% Similarity=0.375 Sum_probs=94.6
Q ss_pred CceEEEEEEEEEeEecCCCCCCCCCCcEEEEEECCeEEEeeeecCCCCCCcccceeEEEeeCCC----cCeEEEEEEEcc
Q 001696 445 PKLWYLRVNVIEAQDIVPNDRNRLPEGFVKVQVGNQVLKTKICPTPTTNPLWNEDLVFVAAEPF----EEQLFLTVEDRV 520 (1026)
Q Consensus 445 p~~~~l~V~I~~a~~L~~~d~~~~~dpyV~v~lg~~~~kT~~~~~~t~nP~wne~f~f~v~~~~----~~~L~i~V~d~d 520 (1026)
|+.+.|+|+|++|++|. ++.+||||+++++++.++|+++ +++.||.|||.|.|.+..+. ...|.|+|||++
T Consensus 1 ~~~~~l~V~v~~a~~L~----~~~~dpyv~v~~~~~~~kT~~~-~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~ 75 (111)
T cd04011 1 PQDFQVRVRVIEARQLV----GGNIDPVVKVEVGGQKKYTSVK-KGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSR 75 (111)
T ss_pred CCcEEEEEEEEEcccCC----CCCCCCEEEEEECCEeeeeeEE-eccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCc
Confidence 45688999999999998 5679999999999999999999 68999999999999986542 468999999999
Q ss_pred CCCCCceeEEEEEeCcccccccCCCCccceeEEcccC
Q 001696 521 HASKDEVLGKISLPLHIFEKRLDHRPVHSRWFNLEKF 557 (1026)
Q Consensus 521 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~~~ 557 (1026)
..+++++||++.++|+++... +.+....+|++|.++
T Consensus 76 ~~~~~~~iG~~~i~l~~v~~~-~~~~~~~~w~~L~~~ 111 (111)
T cd04011 76 SLRSDTLIGSFKLDVGTVYDQ-PDHAFLRKWLLLTDP 111 (111)
T ss_pred ccccCCccEEEEECCccccCC-CCCcceEEEEEeeCc
Confidence 888999999999999999865 556788999999764
No 84
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.68 E-value=3.9e-16 Score=144.20 Aligned_cols=102 Identities=28% Similarity=0.381 Sum_probs=88.2
Q ss_pred eeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeEeeeecCCCCCeEeEEEEEEecCCCCCeEEEEEEeCCCCCCCce
Q 001696 284 MSYLYVRVVKAKDLPPSSITGSCDPYVEVKMGNYKGRTKHFEKRMNPEWNQVFAFSKERIQSSMLEVFLKDKEMVGRDDY 363 (1026)
Q Consensus 284 ~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~v~V~d~~~~~~d~~ 363 (1026)
++.|.|+|++|++|+.++ ..||||+|++++++.+|++.++ .||.|||+|.|.+.+.. ..|.|+|||++.+ .|++
T Consensus 1 m~~L~V~Vv~Ar~L~~~~---~~dPYV~Ik~g~~k~kT~v~~~-~nP~WnE~F~F~~~~~~-~~L~v~V~dkd~~-~DD~ 74 (127)
T cd08394 1 MSLLCVLVKKAKLDGAPD---KFNTYVTLKVQNVKSTTIAVRG-SQPCWEQDFMFEINRLD-LGLVIELWNKGLI-WDTL 74 (127)
T ss_pred CceEEEEEEEeeCCCCCC---CCCCeEEEEECCEEeEeeECCC-CCCceeeEEEEEEcCCC-CEEEEEEEeCCCc-CCCc
Confidence 367999999999997654 4699999999999999999987 59999999999998764 4599999999976 9999
Q ss_pred eEEEEEEccccCCCCCCCCCCCCEEEEeecC
Q 001696 364 LGRVAFDLNEVPTRVPPDSPLAPQWYRLEDR 394 (1026)
Q Consensus 364 lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~ 394 (1026)
||++.|+|.++..+. .+..++||+|...
T Consensus 75 lG~v~i~L~~v~~~~---~~~~~~Wy~L~~~ 102 (127)
T cd08394 75 VGTVWIPLSTIRQSN---EEGPGEWLTLDSE 102 (127)
T ss_pred eEEEEEEhHHcccCC---CCCCCccEecChH
Confidence 999999999998763 3456799999854
No 85
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=99.68 E-value=5.1e-16 Score=147.46 Aligned_cols=114 Identities=32% Similarity=0.564 Sum_probs=99.5
Q ss_pred eEEEEEEEEeecCCCCCC------CCCCCcEEEEEECCeeeEeeeecCCCCCeEeEEEEEEecCCCCCeEEEEEEeCCCC
Q 001696 285 SYLYVRVVKAKDLPPSSI------TGSCDPYVEVKMGNYKGRTKHFEKRMNPEWNQVFAFSKERIQSSMLEVFLKDKEMV 358 (1026)
Q Consensus 285 ~~L~V~v~~a~~L~~~d~------~g~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~v~V~d~~~~ 358 (1026)
|.|+|+|++|++|+..+. .|.+||||+|++++..++|++++++.||.|||+|.|.+.+.....|.|+|||++..
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v~d~~~~ 80 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEAVVDEVPGQELEIELFDEDPD 80 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECCEeEEccccCCCCCCcccceEEEEeCCCCCCEEEEEEEecCCC
Confidence 468999999999998874 36899999999999999999999999999999999999766678999999999988
Q ss_pred CCCceeEEEEEEccccCCCCCCCCCCCCEEEEeecCCCCCcccceEEEEEE
Q 001696 359 GRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLEDRRGEGKVRGQTMLAIW 409 (1026)
Q Consensus 359 ~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~ 409 (1026)
++++||++.+++.++...... ..||+|.+. ..|+|++.+.
T Consensus 81 -~~~~iG~~~i~l~~l~~~~~~-----~~w~~L~~~-----~~G~~~~~~~ 120 (121)
T cd08391 81 -KDDFLGRLSIDLGSVEKKGFI-----DEWLPLEDV-----KSGRLHLKLE 120 (121)
T ss_pred -CCCcEEEEEEEHHHhcccCcc-----ceEEECcCC-----CCceEEEEEe
Confidence 899999999999999865433 399999864 3589988764
No 86
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=99.68 E-value=1.5e-16 Score=149.62 Aligned_cols=104 Identities=17% Similarity=0.245 Sum_probs=89.2
Q ss_pred ceEEEEeecCCCccCCCCCCCCCEEEEEeC------CceeeeccCCCCCCcccceeEEEeccCCCCCccceEEEEEeeCC
Q 001696 2 KLVVEVVDAYDLMPKDGEGSASPFAEVDFL------NQLSKTKTIPKNLNPVWNQKLLFDFDQTKSHNHLRIEVSIYHHE 75 (1026)
Q Consensus 2 ~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~------~~~~~T~~~~~t~nP~Wne~f~f~~~~~~~~~~~~L~~~V~d~d 75 (1026)
+|.|+|++|+||++.+..|.+||||++++- +.+++|+++++++||+|||+|.|.+.. +++....|.|.|||++
T Consensus 15 ~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~-~~L~~~~L~~~V~~~~ 93 (124)
T cd08680 15 SLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISS-TKLYQKTLQVDVCSVG 93 (124)
T ss_pred EEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCH-HHhhcCEEEEEEEeCC
Confidence 699999999999998888999999999982 257899999999999999999999765 3456679999999965
Q ss_pred CCCCCCCccceeEEecCccccccCCceeEEeec
Q 001696 76 RRPIPGRHFLGRVRIPCSNLVRKGEEVYQRFPL 108 (1026)
Q Consensus 76 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L 108 (1026)
+. +++++||++.|+|.++.........||+|
T Consensus 94 ~~--~~~~~lG~~~i~L~~~~~~~~~~~~Wy~l 124 (124)
T cd08680 94 PD--QQEECLGGAQISLADFESSEEMSTKWYNL 124 (124)
T ss_pred CC--CceeEEEEEEEEhhhccCCCccccccccC
Confidence 43 57899999999999996665557789876
No 87
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.68 E-value=3.5e-16 Score=151.69 Aligned_cols=103 Identities=33% Similarity=0.504 Sum_probs=88.7
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeEeeeecCCCCCeEeEEEEEEec---------------CCCCC
Q 001696 287 LYVRVVKAKDLPPSSITGSCDPYVEVKMGN-----YKGRTKHFEKRMNPEWNQVFAFSKE---------------RIQSS 346 (1026)
Q Consensus 287 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~-----~~~kT~~~~~t~nP~wne~f~f~v~---------------~~~~~ 346 (1026)
|.|+|++|+||+. .+|.+||||+|.+.+ .+.+|+++++|.||+|||+|.|.+. +....
T Consensus 2 L~V~Vi~ArnL~~--~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~~ 79 (148)
T cd04010 2 LSVRVIECSDLAL--KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEKL 79 (148)
T ss_pred EEEEEEeCcCCCC--CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccEE
Confidence 7899999999988 568999999999976 5689999999999999999999984 22246
Q ss_pred eEEEEEEeCCCCCCCceeEEEEEEccccCCC-CCCCCCCCCEEEEeecCCC
Q 001696 347 MLEVFLKDKEMVGRDDYLGRVAFDLNEVPTR-VPPDSPLAPQWYRLEDRRG 396 (1026)
Q Consensus 347 ~L~v~V~d~~~~~~d~~lG~~~i~l~~l~~~-~~~~~~~~~~w~~L~~~~~ 396 (1026)
.|.|.|||++.+++|++||++.|++..+... .. ...||+|.....
T Consensus 80 ~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~~~~-----~~~W~~L~~~~~ 125 (148)
T cd04010 80 ELRVDLWHASMGGGDVFLGEVRIPLRGLDLQAGS-----HQAWYFLQPREE 125 (148)
T ss_pred EEEEEEEcCCCCCCCceeEEEEEecccccccCCc-----CcceeecCCccc
Confidence 7999999999988999999999999998875 22 238999987654
No 88
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=99.67 E-value=5.9e-16 Score=147.53 Aligned_cols=102 Identities=28% Similarity=0.394 Sum_probs=90.4
Q ss_pred eEEEEEEEEecCCCCCccCCCCCCcCcEEEEEEC---CEEEEeeeecCCCCceeecEEEEEeeCC---CCEEEEEEEeCC
Q 001696 612 GILEVGILGAQGLLPMKMKDGRGSTDAYCIAKYG---QKWVRTRTILDTFNPKWNEQYTWEVYDP---CTVITLGVFDNC 685 (1026)
Q Consensus 612 g~L~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~g---~~~~~T~~~~~t~~P~wne~~~~~v~~~---~~~l~i~v~d~~ 685 (1026)
+.|+|+|++|+||+.+ +..+.+||||++.+. ...+||++++++.||.|||.|.|.+... ...|.|+|||++
T Consensus 16 ~~L~V~v~~a~~L~~~---d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~V~d~d 92 (124)
T cd08385 16 NQLTVGIIQAADLPAM---DMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSELGNKTLVFSVYDFD 92 (124)
T ss_pred CEEEEEEEEeeCCCCc---cCCCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHHHhCCCEEEEEEEeCC
Confidence 7899999999999987 667889999999884 3568999999999999999999998752 457999999999
Q ss_pred CCCCCCccCCCCCCCCCeeEEEEEEcccccCCceEeeeEeee
Q 001696 686 HLGGGEKQNGSSAVRDSRIGKVRIRLSTLEAHRIYTHSYPLL 727 (1026)
Q Consensus 686 ~~~~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~ 727 (1026)
.++ ++++||++.|+|+++..+....+||+|.
T Consensus 93 ~~~-----------~~~~lG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08385 93 RFS-----------KHDLIGEVRVPLLTVDLGHVTEEWRDLE 123 (124)
T ss_pred CCC-----------CCceeEEEEEecCcccCCCCcceEEEcc
Confidence 865 7899999999999998888889999984
No 89
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=99.67 E-value=9.7e-16 Score=146.85 Aligned_cols=124 Identities=21% Similarity=0.375 Sum_probs=103.0
Q ss_pred eEEEEEEEEecCCCCCccCCCCCCcCcEEEEEECCEE-EEeeeecCCCCceeecEEEEEeeCCCCEEEEEEEeCCCCCCC
Q 001696 612 GILEVGILGAQGLLPMKMKDGRGSTDAYCIAKYGQKW-VRTRTILDTFNPKWNEQYTWEVYDPCTVITLGVFDNCHLGGG 690 (1026)
Q Consensus 612 g~L~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~g~~~-~~T~~~~~t~~P~wne~~~~~v~~~~~~l~i~v~d~~~~~~~ 690 (1026)
..|.|.|++|+||+++ .||||.|.+++.. .||+++.++.||.|||.|.|....+...|+|.|++.+... +
T Consensus 11 ~sL~v~V~EAk~Lp~~--------~~~Y~~i~Ld~~~vaRT~v~~~~~nP~W~E~F~f~~~~~~~~l~v~v~k~~~~~-~ 81 (146)
T cd04013 11 NSLKLWIIEAKGLPPK--------KRYYCELCLDKTLYARTTSKLKTDTLFWGEHFEFSNLPPVSVITVNLYRESDKK-K 81 (146)
T ss_pred EEEEEEEEEccCCCCc--------CCceEEEEECCEEEEEEEEEcCCCCCcceeeEEecCCCcccEEEEEEEEccCcc-c
Confidence 4799999999999885 2799999999888 6999999999999999999988777788999998655321 0
Q ss_pred CccCCCCCCCCCeeEEEEEEcccccCCceEeeeEeeeecCCCC-------CccCcEEEEEEEEeecc
Q 001696 691 EKQNGSSAVRDSRIGKVRIRLSTLEAHRIYTHSYPLLVLHPHG-------VKKMGELQLAIRFTIFS 750 (1026)
Q Consensus 691 ~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g-------~~~~G~i~l~~~f~~~~ 750 (1026)
...++.+||++.|++.+|.++...+.||||....... .+..++|+++++|.+..
T Consensus 82 ------~~~~~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~~~ 142 (146)
T cd04013 82 ------KKDKSQLIGTVNIPVTDVSSRQFVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQSTR 142 (146)
T ss_pred ------cccCCcEEEEEEEEHHHhcCCCcccEEEEeecCCCCCccccccccCCCCEEEEEEEEEEee
Confidence 0126899999999999999999999999999765443 23357999999998753
No 90
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.67 E-value=3.2e-16 Score=144.29 Aligned_cols=103 Identities=27% Similarity=0.467 Sum_probs=93.0
Q ss_pred EEEEEEEeEecCCCCCCCCCCcEEEEEECCeEEEeeeecCCCCCCcccceeEEEeeCCCcCeEEEEEEEccCCCCCceeE
Q 001696 450 LRVNVIEAQDIVPNDRNRLPEGFVKVQVGNQVLKTKICPTPTTNPLWNEDLVFVAAEPFEEQLFLTVEDRVHASKDEVLG 529 (1026)
Q Consensus 450 l~V~I~~a~~L~~~d~~~~~dpyV~v~lg~~~~kT~~~~~~t~nP~wne~f~f~v~~~~~~~L~i~V~d~d~~~~d~~lG 529 (1026)
|.|+|++|++|+..+..+.+||||+++++++.++|+++ +++.||.|||.|.|.+.++..+.|.|+|+|.+. +++||
T Consensus 2 L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~v~-~~t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~---~~~iG 77 (105)
T cd04050 2 LFVYLDSAKNLPLAKSTKEPSPYVELTVGKTTQKSKVK-ERTNNPVWEEGFTFLVRNPENQELEIEVKDDKT---GKSLG 77 (105)
T ss_pred EEEEEeeecCCCCcccCCCCCcEEEEEECCEEEeCccc-cCCCCCcccceEEEEeCCCCCCEEEEEEEECCC---CCccE
Confidence 78999999999998888899999999999999999999 799999999999999998877899999999875 88999
Q ss_pred EEEEeCcccccccCCCCccceeEEcccCC
Q 001696 530 KISLPLHIFEKRLDHRPVHSRWFNLEKFG 558 (1026)
Q Consensus 530 ~~~i~l~~l~~~~~~~~~~~~w~~L~~~~ 558 (1026)
++.++|.++... .....++||+|.+.+
T Consensus 78 ~~~i~l~~l~~~--~~~~~~~w~~L~~~g 104 (105)
T cd04050 78 SLTLPLSELLKE--PDLTLDQPFPLDNSG 104 (105)
T ss_pred EEEEEHHHhhcc--ccceeeeeEecCCCC
Confidence 999999998864 235689999998753
No 91
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.67 E-value=3.8e-16 Score=148.07 Aligned_cols=114 Identities=25% Similarity=0.381 Sum_probs=98.3
Q ss_pred cc-eeEeeeccccceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC---eeeEeeeecCCCCCeEeEEEEEE-ec--CC
Q 001696 271 GE-RFTSTYDLVEQMSYLYVRVVKAKDLPPSSITGSCDPYVEVKMGN---YKGRTKHFEKRMNPEWNQVFAFS-KE--RI 343 (1026)
Q Consensus 271 g~-~~~~~y~~~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~---~~~kT~~~~~t~nP~wne~f~f~-v~--~~ 343 (1026)
|+ ++++.|+. ..+.|.|+|++|+||++.+..|.+||||++.+.+ ++.+|+++++ .||+|||+|.|. +. +.
T Consensus 3 G~l~~sl~Y~~--~~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l 79 (124)
T cd08389 3 GDLDVAFEYDP--SARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEEL 79 (124)
T ss_pred EEEEEEEEECC--CCCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHHh
Confidence 45 88999987 5589999999999999999888999999988754 4689999887 999999999998 53 33
Q ss_pred CCCeEEEEEEeCCCCCCCceeEEEEEEccccCCCCCCCCCCCCEEEEee
Q 001696 344 QSSMLEVFLKDKEMVGRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLE 392 (1026)
Q Consensus 344 ~~~~L~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~ 392 (1026)
....|.|+|||++.++++++||++.|+|.++...... ..||+|+
T Consensus 80 ~~~~L~~~V~~~~~~~~~~~lG~~~i~L~~l~~~~~~-----~~w~~L~ 123 (124)
T cd08389 80 NNMALRFRLYGVERMRKERLIGEKVVPLSQLNLEGET-----TVWLTLE 123 (124)
T ss_pred ccCEEEEEEEECCCcccCceEEEEEEeccccCCCCCc-----eEEEeCC
Confidence 5678999999999999999999999999999765443 3999987
No 92
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.67 E-value=5.7e-16 Score=147.94 Aligned_cols=115 Identities=32% Similarity=0.581 Sum_probs=99.2
Q ss_pred cc-eeEeeeccccceeEEEEEEEEeecCCCCCCCCCCCcEEEEEEC---CeeeEeeeecCCCCCeEeEEEEEEec---CC
Q 001696 271 GE-RFTSTYDLVEQMSYLYVRVVKAKDLPPSSITGSCDPYVEVKMG---NYKGRTKHFEKRMNPEWNQVFAFSKE---RI 343 (1026)
Q Consensus 271 g~-~~~~~y~~~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~---~~~~kT~~~~~t~nP~wne~f~f~v~---~~ 343 (1026)
|+ ++++.|.. ..+.|.|+|++|+||+..+..+.+||||+|.+. +.+.+|++++++.||.|||+|.|.+. ..
T Consensus 3 G~l~~~l~y~~--~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l 80 (125)
T cd08386 3 GRIQFSVSYDF--QESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKL 80 (125)
T ss_pred cEEEEEEEECC--CCCEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHHh
Confidence 45 88899976 568999999999999999988899999999994 35789999999999999999999742 23
Q ss_pred CCCeEEEEEEeCCCCCCCceeEEEEEEccccCCCCCCCCCCCCEEEEee
Q 001696 344 QSSMLEVFLKDKEMVGRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLE 392 (1026)
Q Consensus 344 ~~~~L~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~ 392 (1026)
....|.|+|||++.++++++||++.+++.++......+ .|+.|.
T Consensus 81 ~~~~l~~~v~d~d~~~~~~~iG~~~i~l~~l~~~~~~~-----~W~~l~ 124 (125)
T cd08386 81 QQRVLYLQVLDYDRFSRNDPIGEVSLPLNKVDLTEEQT-----FWKDLK 124 (125)
T ss_pred CCCEEEEEEEeCCCCcCCcEeeEEEEecccccCCCCcc-----eEEecC
Confidence 45689999999999999999999999999998765444 999986
No 93
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=99.67 E-value=1.4e-15 Score=150.16 Aligned_cols=121 Identities=25% Similarity=0.455 Sum_probs=102.0
Q ss_pred eeEEEEEEEEeecCCCCC------------------------------CCCCCCcEEEEEECCee-eEeeeecCCCCCeE
Q 001696 284 MSYLYVRVVKAKDLPPSS------------------------------ITGSCDPYVEVKMGNYK-GRTKHFEKRMNPEW 332 (1026)
Q Consensus 284 ~~~L~V~v~~a~~L~~~d------------------------------~~g~~dpyv~v~~~~~~-~kT~~~~~t~nP~w 332 (1026)
.|.|.|+|++|++|+.+| ..|.+||||+|.+++.+ .+|++++++.||.|
T Consensus 6 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v~~~~~nP~W 85 (158)
T cd04015 6 HGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVIENSENPVW 85 (158)
T ss_pred eeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEEeCCCCCCcc
Confidence 489999999999999987 34678999999999864 69999999999999
Q ss_pred eEEEEEEecCCCCCeEEEEEEeCCCCCCCceeEEEEEEccccCCCCCCCCCCCCEEEEeecCCCCC-cccceEEEEEEec
Q 001696 333 NQVFAFSKERIQSSMLEVFLKDKEMVGRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLEDRRGEG-KVRGQTMLAIWMG 411 (1026)
Q Consensus 333 ne~f~f~v~~~~~~~L~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~-~~~G~i~l~~~~~ 411 (1026)
||+|.|.+... ...|.|+|||.+.++ +++||++.+++.++..+...+ .||+|.+..+.. +..|.|++++.|.
T Consensus 86 nE~F~~~~~~~-~~~l~~~V~d~d~~~-~~~IG~~~i~l~~l~~g~~~~-----~w~~L~~~~~~~~~~~~~l~v~~~f~ 158 (158)
T cd04015 86 NESFHIYCAHY-ASHVEFTVKDNDVVG-AQLIGRAYIPVEDLLSGEPVE-----GWLPILDSNGKPPKPGAKIRVSLQFT 158 (158)
T ss_pred ceEEEEEccCC-CCEEEEEEEeCCCcC-CcEEEEEEEEhHHccCCCCcc-----eEEECcCCCCCCCCCCCEEEEEEEEC
Confidence 99999998655 468999999999884 689999999999998765444 999998865442 3468999998873
No 94
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=99.67 E-value=9.2e-16 Score=146.45 Aligned_cols=115 Identities=33% Similarity=0.570 Sum_probs=100.1
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeEeeeecCCCCCeEeEEEEEEecCCCCCeEEEEEEeCCCC-------
Q 001696 286 YLYVRVVKAKDLPPSSITGSCDPYVEVKMGNYKGRTKHFEKRMNPEWNQVFAFSKERIQSSMLEVFLKDKEMV------- 358 (1026)
Q Consensus 286 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~v~V~d~~~~------- 358 (1026)
.|+|+|++|++|+..+..|.+||||+|.+++...+|++++++.||.|||+|.|.+... ...|.|+|||++..
T Consensus 2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~v~~t~~P~Wne~f~f~~~~~-~~~l~i~v~d~d~~~~~~~~~ 80 (127)
T cd04027 2 KISITVVCAQGLIAKDKTGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHNS-SDRIKVRVWDEDDDIKSRLKQ 80 (127)
T ss_pred eEEEEEEECcCCcCCCCCCCcCcEEEEEECCEeeecceecCCCCCccceEEEEEecCC-CCEEEEEEEECCCCcccccce
Confidence 5899999999999999889999999999998899999999999999999999998655 46899999999852
Q ss_pred ----CCCceeEEEEEEccccCCCCCCCCCCCCEEEEeecCCCCCcccceEEEEE
Q 001696 359 ----GRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLEDRRGEGKVRGQTMLAI 408 (1026)
Q Consensus 359 ----~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~ 408 (1026)
+.+++||++.+++.++... ...||.|+.....+..+|+|++++
T Consensus 81 ~~~~~~~~~iG~~~i~l~~~~~~-------~~~w~~L~~~~~~~~~~G~i~~~~ 127 (127)
T cd04027 81 KFTRESDDFLGQTIIEVRTLSGE-------MDVWYNLEKRTDKSAVSGAIRLHI 127 (127)
T ss_pred eccccCCCcceEEEEEhHHccCC-------CCeEEECccCCCCCcEeEEEEEEC
Confidence 4799999999999987532 239999998776667899998863
No 95
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.67 E-value=1.3e-15 Score=147.13 Aligned_cols=122 Identities=25% Similarity=0.455 Sum_probs=99.9
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeEeeeecCCCCCeEeEEEEEEecCC---------CCCeEEEEEEeCC
Q 001696 286 YLYVRVVKAKDLPPSSITGSCDPYVEVKMGNYKGRTKHFEKRMNPEWNQVFAFSKERI---------QSSMLEVFLKDKE 356 (1026)
Q Consensus 286 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~---------~~~~L~v~V~d~~ 356 (1026)
+|+|+|++|++|+.++..|.+||||+|.+++++.+|++++++.||.|||+|.|.+... ....|.|+|||++
T Consensus 2 ~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~d 81 (135)
T cd04017 2 QLRAYIYQARDLLAADKSGLSDPFARVSFLNQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQD 81 (135)
T ss_pred EEEEEEEEeecCcCCCCCCCCCCEEEEEECCeeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeCc
Confidence 6899999999999999999999999999999999999999999999999999975322 1257999999999
Q ss_pred CCCCCceeEEEEE-EccccCCCCCCCCCCCCEEEEeecCCCCCcccceEEEEEEecc
Q 001696 357 MVGRDDYLGRVAF-DLNEVPTRVPPDSPLAPQWYRLEDRRGEGKVRGQTMLAIWMGT 412 (1026)
Q Consensus 357 ~~~~d~~lG~~~i-~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~ 412 (1026)
..++|++||++.+ ++..+.... .+...++|++|.... ...|+|++++.+..
T Consensus 82 ~~~~d~~iG~~~i~~~~~~~~~~--~~~~~~~W~~L~~~~---~~~Geil~~~~~~~ 133 (135)
T cd04017 82 SVGKDEFLGRSVAKPLVKLDLEE--DFPPKLQWFPIYKGG---QSAGELLAAFELIE 133 (135)
T ss_pred CCCCCccceEEEeeeeeecccCC--CCCCCceEEEeecCC---CchhheeEEeEEEE
Confidence 9999999999997 444443321 223456999998542 46899999987754
No 96
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=99.67 E-value=3.6e-16 Score=146.73 Aligned_cols=109 Identities=22% Similarity=0.437 Sum_probs=90.5
Q ss_pred eeEeeeccccceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeEeeeecCCCCCeEeEEEEEEecCC-CCC
Q 001696 273 RFTSTYDLVEQMSYLYVRVVKAKDLPPSSITGSCDPYVEVKMGN-----YKGRTKHFEKRMNPEWNQVFAFSKERI-QSS 346 (1026)
Q Consensus 273 ~~~~~y~~~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~-----~~~kT~~~~~t~nP~wne~f~f~v~~~-~~~ 346 (1026)
++++.| ..+.|.|+|++|+||++++ .|.+||||++++.+ .+.||++++++.||+|||+|.|.+... ...
T Consensus 4 ~l~~~~----~~~~L~V~Vi~ar~L~~~~-~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~ 78 (119)
T cd08685 4 KLSIEG----QNRKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQK 78 (119)
T ss_pred EEEEEE----cCCEEEEEEEEEECCCCCC-CCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhCC
Confidence 444555 4589999999999999998 78999999999975 256899999999999999999998532 235
Q ss_pred eEEEEEEeCCCCC-CCceeEEEEEEccccCCCCCCCCCCCCEEEEe
Q 001696 347 MLEVFLKDKEMVG-RDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRL 391 (1026)
Q Consensus 347 ~L~v~V~d~~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L 391 (1026)
.|.|+|||++..+ .+++||.+.|++.++..+...+ .||.|
T Consensus 79 ~l~v~V~~~~~~~~~~~~lG~~~i~l~~~~~~~~~~-----~Wy~l 119 (119)
T cd08685 79 RLLVTVWNKLSKSRDSGLLGCMSFGVKSIVNQKEIS-----GWYYL 119 (119)
T ss_pred EEEEEEECCCCCcCCCEEEEEEEecHHHhccCcccc-----ceEeC
Confidence 7999999998875 4789999999999998654444 89976
No 97
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=99.67 E-value=7e-16 Score=147.81 Aligned_cols=104 Identities=22% Similarity=0.276 Sum_probs=90.4
Q ss_pred eEEEEEEEEecCCCCCccCCCCCCcCcEEEEEEC-----CEEEEeeeecCCCCceeecEEEEEeeCC---CCEEEEEEEe
Q 001696 612 GILEVGILGAQGLLPMKMKDGRGSTDAYCIAKYG-----QKWVRTRTILDTFNPKWNEQYTWEVYDP---CTVITLGVFD 683 (1026)
Q Consensus 612 g~L~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~g-----~~~~~T~~~~~t~~P~wne~~~~~v~~~---~~~l~i~v~d 683 (1026)
+.|+|.|++|+||+.+ +..+.+||||+|.+. ...+||++++++.||.|||.|.|.+... ...|.|.|||
T Consensus 16 ~~L~V~vi~a~~L~~~---~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~l~~~~l~i~v~~ 92 (127)
T cd04030 16 QKLIVTVHKCRNLPPC---DSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEELKRRTLDVAVKN 92 (127)
T ss_pred CEEEEEEEEEECCCCc---cCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHHhcCCEEEEEEEE
Confidence 7899999999999987 667899999999984 4679999999999999999999998643 4689999999
Q ss_pred CCCCCCCCccCCCCCCCCCeeEEEEEEcccccCCceEeeeEeee
Q 001696 684 NCHLGGGEKQNGSSAVRDSRIGKVRIRLSTLEAHRIYTHSYPLL 727 (1026)
Q Consensus 684 ~~~~~~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~ 727 (1026)
++.+. .+++++||.+.|+|.++..+.....||+|.
T Consensus 93 ~~~~~---------~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~ 127 (127)
T cd04030 93 SKSFL---------SREKKLLGQVLIDLSDLDLSKGFTQWYDLT 127 (127)
T ss_pred CCccc---------CCCCceEEEEEEecccccccCCccceEECc
Confidence 88641 137999999999999998888889999983
No 98
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.67 E-value=3e-16 Score=148.80 Aligned_cols=106 Identities=29% Similarity=0.380 Sum_probs=89.5
Q ss_pred CceEEEEeecCCCccCCCCCCCCCEEEEEe---CCceeeeccCCCCCCcccceeEEEeccCCCCCccceEEEEEeeCCCC
Q 001696 1 MKLVVEVVDAYDLMPKDGEGSASPFAEVDF---LNQLSKTKTIPKNLNPVWNQKLLFDFDQTKSHNHLRIEVSIYHHERR 77 (1026)
Q Consensus 1 ~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~---~~~~~~T~~~~~t~nP~Wne~f~f~~~~~~~~~~~~L~~~V~d~d~~ 77 (1026)
++|.|+|++|+||++.+.+|.+||||++.+ .+++++|+++++ .||+|||+|.|...+.+.+....|.|.|||++..
T Consensus 16 ~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l~~~~L~~~V~~~~~~ 94 (124)
T cd08389 16 RKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEELNNMALRFRLYGVERM 94 (124)
T ss_pred CEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHHhccCEEEEEEEECCCc
Confidence 369999999999999998999999999887 236889999887 9999999999994444445567899999996653
Q ss_pred CCCCCccceeEEecCccccccCCceeEEeeccc
Q 001696 78 PIPGRHFLGRVRIPCSNLVRKGEEVYQRFPLEK 110 (1026)
Q Consensus 78 ~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~ 110 (1026)
+++++||++.|+|+++.... ....||+|++
T Consensus 95 --~~~~~lG~~~i~L~~l~~~~-~~~~w~~L~p 124 (124)
T cd08389 95 --RKERLIGEKVVPLSQLNLEG-ETTVWLTLEP 124 (124)
T ss_pred --ccCceEEEEEEeccccCCCC-CceEEEeCCC
Confidence 57999999999999996654 4889999975
No 99
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=99.66 E-value=3.2e-16 Score=149.37 Aligned_cols=107 Identities=20% Similarity=0.363 Sum_probs=87.7
Q ss_pred ceEEEEeecCCCccCCCC-CCCCCEEEEEeC---CceeeeccCCCCCCcccceeEEEeccCCCCCccceEEEEEeeCCCC
Q 001696 2 KLVVEVVDAYDLMPKDGE-GSASPFAEVDFL---NQLSKTKTIPKNLNPVWNQKLLFDFDQTKSHNHLRIEVSIYHHERR 77 (1026)
Q Consensus 2 ~L~V~v~~a~~L~~~~~~-g~~dpyv~v~~~---~~~~~T~~~~~t~nP~Wne~f~f~~~~~~~~~~~~L~~~V~d~d~~ 77 (1026)
+|.|+|++|+||+..+.. |.+||||+|.+. +++++|+++++|+||+|||+|.|...+........|.|+|||+|+.
T Consensus 17 ~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~~~~~~L~~~V~d~d~~ 96 (128)
T cd08388 17 ALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYNQLQDLSLHFAVLSFDRY 96 (128)
T ss_pred EEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHHHhCCCEEEEEEEEcCCC
Confidence 689999999999988876 899999999994 4577999999999999999999953333333345799999996653
Q ss_pred CCCCCccceeEEecCcccccc-CCceeEEeeccc
Q 001696 78 PIPGRHFLGRVRIPCSNLVRK-GEEVYQRFPLEK 110 (1026)
Q Consensus 78 ~~~~d~~lG~~~i~l~~l~~~-~~~~~~w~~L~~ 110 (1026)
+++++||++.|+|.++... ......|.+|++
T Consensus 97 --~~d~~lG~~~i~L~~l~~~~~~~~~~~~~~~~ 128 (128)
T cd08388 97 --SRDDVIGEVVCPLAGADLLNEGELLVSREIQP 128 (128)
T ss_pred --CCCceeEEEEEeccccCCCCCceEEEEEeccC
Confidence 4899999999999998655 334788998864
No 100
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.66 E-value=1.3e-15 Score=146.73 Aligned_cols=118 Identities=25% Similarity=0.344 Sum_probs=99.7
Q ss_pred ceEEEEEEEEecCCCCCccC-------CCCCCcCcEEEEEECCEE-EEeeeecCCCCceeecEEEEEeeCCCCEEEEEEE
Q 001696 611 VGILEVGILGAQGLLPMKMK-------DGRGSTDAYCIAKYGQKW-VRTRTILDTFNPKWNEQYTWEVYDPCTVITLGVF 682 (1026)
Q Consensus 611 ~g~L~v~v~~a~~L~~~~~~-------~~~~~~dpyv~v~~g~~~-~~T~~~~~t~~P~wne~~~~~v~~~~~~l~i~v~ 682 (1026)
.|.|+|.|++|+||...+.. .+.|.+||||++.++++. .+|++++++.||.|||.|.|.+. ....|.|.||
T Consensus 3 ~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~-~~~~l~~~v~ 81 (132)
T cd04014 3 TGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPKTNSPVWNEEFTTEVH-NGRNLELTVF 81 (132)
T ss_pred ceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEEeEEeEcCCCCCCCcceeEEEEcC-CCCEEEEEEE
Confidence 38999999999999887420 013689999999999866 69999999999999999999997 4567999999
Q ss_pred eCCCCCCCCccCCCCCCCCCeeEEEEEEcccccC--CceEeeeEeeeecCCCCCccCcEEEEEEEEee
Q 001696 683 DNCHLGGGEKQNGSSAVRDSRIGKVRIRLSTLEA--HRIYTHSYPLLVLHPHGVKKMGELQLAIRFTI 748 (1026)
Q Consensus 683 d~~~~~~~~~~~~~~~~~~~~lG~~~i~l~~l~~--~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~~ 748 (1026)
|++.++ .+++||++.|+|+++.. +.....||+|. ..|+|+|++.|..
T Consensus 82 d~~~~~-----------~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~--------~~G~l~l~~~~~~ 130 (132)
T cd04014 82 HDAAIG-----------PDDFVANCTISFEDLIQRGSGSFDLWVDLE--------PQGKLHVKIELKG 130 (132)
T ss_pred eCCCCC-----------CCceEEEEEEEhHHhcccCCCcccEEEEcc--------CCcEEEEEEEEec
Confidence 988754 78999999999999876 56679999995 3599999998854
No 101
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.66 E-value=6.4e-16 Score=142.74 Aligned_cols=99 Identities=17% Similarity=0.161 Sum_probs=86.9
Q ss_pred eEEEEEEEEecCCCCCccCCCCCCcCcEEEEEECCEEEEeeeecCCCCceeecEEEEEeeCCCCEEEEEEEeCCCCCCCC
Q 001696 612 GILEVGILGAQGLLPMKMKDGRGSTDAYCIAKYGQKWVRTRTILDTFNPKWNEQYTWEVYDPCTVITLGVFDNCHLGGGE 691 (1026)
Q Consensus 612 g~L~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~g~~~~~T~~~~~t~~P~wne~~~~~v~~~~~~l~i~v~d~~~~~~~~ 691 (1026)
+.|.|.|++|++|+.. +..||||+|++|+++.+|+++++ .||.|||.|.|.+.++...|.|+|||++.+
T Consensus 2 ~~L~V~Vv~Ar~L~~~------~~~dPYV~Ik~g~~k~kT~v~~~-~nP~WnE~F~F~~~~~~~~L~v~V~dkd~~---- 70 (127)
T cd08394 2 SLLCVLVKKAKLDGAP------DKFNTYVTLKVQNVKSTTIAVRG-SQPCWEQDFMFEINRLDLGLVIELWNKGLI---- 70 (127)
T ss_pred ceEEEEEEEeeCCCCC------CCCCCeEEEEECCEEeEeeECCC-CCCceeeEEEEEEcCCCCEEEEEEEeCCCc----
Confidence 6899999999999753 24589999999999999999988 499999999999998888899999998853
Q ss_pred ccCCCCCCCCCeeEEEEEEcccccCCceE--eeeEeeeec
Q 001696 692 KQNGSSAVRDSRIGKVRIRLSTLEAHRIY--THSYPLLVL 729 (1026)
Q Consensus 692 ~~~~~~~~~~~~lG~~~i~l~~l~~~~~~--~~~~~L~~~ 729 (1026)
.|++||++.|+|+++..+... ..||+|...
T Consensus 71 --------~DD~lG~v~i~L~~v~~~~~~~~~~Wy~L~~~ 102 (127)
T cd08394 71 --------WDTLVGTVWIPLSTIRQSNEEGPGEWLTLDSE 102 (127)
T ss_pred --------CCCceEEEEEEhHHcccCCCCCCCccEecChH
Confidence 699999999999999765544 899999843
No 102
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=99.66 E-value=6.3e-16 Score=147.25 Aligned_cols=112 Identities=21% Similarity=0.447 Sum_probs=96.6
Q ss_pred eeEeeeccccceeEEEEEEEEeecCCCCC-CCCCCCcEEEEEECC-----eeeEeeeecCCCCCeEeEEEEEEecC--CC
Q 001696 273 RFTSTYDLVEQMSYLYVRVVKAKDLPPSS-ITGSCDPYVEVKMGN-----YKGRTKHFEKRMNPEWNQVFAFSKER--IQ 344 (1026)
Q Consensus 273 ~~~~~y~~~~~~~~L~V~v~~a~~L~~~d-~~g~~dpyv~v~~~~-----~~~kT~~~~~t~nP~wne~f~f~v~~--~~ 344 (1026)
++++.|+. ..+.|.|+|++|+||+..+ ..+.+||||+|.+.+ .+.+|++++++.||+|||+|.|.+.. ..
T Consensus 4 ~~~l~y~~--~~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l~ 81 (123)
T cd08521 4 EFSLSYNY--KTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQLE 81 (123)
T ss_pred EEEEEEeC--CCCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHHHhC
Confidence 78889976 5589999999999999988 778999999999843 35799999999999999999999754 23
Q ss_pred CCeEEEEEEeCCCCCCCceeEEEEEEccccCCCCCCCCCCCCEEEEe
Q 001696 345 SSMLEVFLKDKEMVGRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRL 391 (1026)
Q Consensus 345 ~~~L~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L 391 (1026)
...|.|+|||++.++++++||++.++|.++..+...+ .||+|
T Consensus 82 ~~~l~i~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~-----~w~~l 123 (123)
T cd08521 82 TRTLQLSVWHHDRFGRNTFLGEVEIPLDSWDLDSQQS-----EWYPL 123 (123)
T ss_pred CCEEEEEEEeCCCCcCCceeeEEEEecccccccCCCc-----cEEEC
Confidence 5689999999999999999999999999997554433 89986
No 103
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.66 E-value=7.9e-16 Score=147.03 Aligned_cols=100 Identities=27% Similarity=0.387 Sum_probs=85.2
Q ss_pred eEEEEEEEEecCCCCCccCCCCCCcCcEEEEEECC-----EEEEeeeecCCCCceeecEEEEEeeC----CCCEEEEEEE
Q 001696 612 GILEVGILGAQGLLPMKMKDGRGSTDAYCIAKYGQ-----KWVRTRTILDTFNPKWNEQYTWEVYD----PCTVITLGVF 682 (1026)
Q Consensus 612 g~L~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~g~-----~~~~T~~~~~t~~P~wne~~~~~v~~----~~~~l~i~v~ 682 (1026)
|.|.|+|++|+||+.+ +..+.+||||+|.+.+ ...||++++++.||.|||.|.|.+.. ....|.|+||
T Consensus 16 ~~L~V~vi~a~~L~~~---~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~l~~~V~ 92 (125)
T cd04031 16 SQLIVTVLQARDLPPR---DDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRETLKERTLEVTVW 92 (125)
T ss_pred CEEEEEEEEecCCCCc---CCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHHhCCCEEEEEEE
Confidence 7899999999999987 5568899999999854 57899999999999999999999754 2567999999
Q ss_pred eCCCCCCCCccCCCCCCCCCeeEEEEEEcccccCCceEeeeEee
Q 001696 683 DNCHLGGGEKQNGSSAVRDSRIGKVRIRLSTLEAHRIYTHSYPL 726 (1026)
Q Consensus 683 d~~~~~~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L 726 (1026)
|++.++ ++++||++.++|++.... ...+||+|
T Consensus 93 d~~~~~-----------~~~~iG~~~i~l~~~~~~-~~~~W~~L 124 (125)
T cd04031 93 DYDRDG-----------ENDFLGEVVIDLADALLD-DEPHWYPL 124 (125)
T ss_pred eCCCCC-----------CCcEeeEEEEeccccccc-CCcceEEC
Confidence 998764 789999999999984222 23789998
No 104
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=99.66 E-value=3.9e-16 Score=144.99 Aligned_cols=100 Identities=29% Similarity=0.467 Sum_probs=89.3
Q ss_pred EEEEEEEecCCCCCccCC-CCCCcCcEEEEEECCEEEEeeeecCCCCcee-ecEEEEEeeCC---CCEEEEEEEeCCCCC
Q 001696 614 LEVGILGAQGLLPMKMKD-GRGSTDAYCIAKYGQKWVRTRTILDTFNPKW-NEQYTWEVYDP---CTVITLGVFDNCHLG 688 (1026)
Q Consensus 614 L~v~v~~a~~L~~~~~~~-~~~~~dpyv~v~~g~~~~~T~~~~~t~~P~w-ne~~~~~v~~~---~~~l~i~v~d~~~~~ 688 (1026)
|+|+|++|+||+.+ + ..|.+||||++.+++..+||+++++++||.| ||.|.|.+... ...|.|+|||++.++
T Consensus 1 l~V~v~~a~~L~~~---d~~~~~~Dpyv~v~~~~~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~ 77 (110)
T cd08688 1 LKVRVVAARDLPVM---DRSSDLTDAFVEVKFGSTTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYS 77 (110)
T ss_pred CEEEEEEEECCCcc---ccCCCCCCceEEEEECCeeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCC
Confidence 57999999999987 4 3678999999999999999999999999999 99999999864 468999999999865
Q ss_pred CCCccCCCCCCCCCeeEEEEEEcccccC---CceEeeeEeee
Q 001696 689 GGEKQNGSSAVRDSRIGKVRIRLSTLEA---HRIYTHSYPLL 727 (1026)
Q Consensus 689 ~~~~~~~~~~~~~~~lG~~~i~l~~l~~---~~~~~~~~~L~ 727 (1026)
++++||++.++|.++.. +..+..||+|.
T Consensus 78 -----------~~~~iG~~~~~l~~l~~~~~~~~~~~w~~l~ 108 (110)
T cd08688 78 -----------ANDAIGKVYIDLNPLLLKDSVSQISGWFPIY 108 (110)
T ss_pred -----------CCCceEEEEEeHHHhcccCCccccCCeEEcc
Confidence 78999999999999976 45679999996
No 105
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=99.66 E-value=6.2e-16 Score=142.31 Aligned_cols=96 Identities=23% Similarity=0.331 Sum_probs=83.4
Q ss_pred eEEEEEEEEecCCCCCccCC-CCCCcCcEEEEEECCEEEEeeeecCCCCceeecEEEEEeeCC--CCEEEEEEEeCCCCC
Q 001696 612 GILEVGILGAQGLLPMKMKD-GRGSTDAYCIAKYGQKWVRTRTILDTFNPKWNEQYTWEVYDP--CTVITLGVFDNCHLG 688 (1026)
Q Consensus 612 g~L~v~v~~a~~L~~~~~~~-~~~~~dpyv~v~~g~~~~~T~~~~~t~~P~wne~~~~~v~~~--~~~l~i~v~d~~~~~ 688 (1026)
|.|.|+|++|++|++.+... ..+.+||||+|+++++.+||+++++++||+|||.|.|.+.+. ...|.|+|||++.++
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~~~~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d~~~ 80 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRRVFRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKDKFS 80 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECCEeEeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECCCCC
Confidence 78999999999999875311 224689999999999999999999999999999999999764 447999999999865
Q ss_pred CCCccCCCCCCCCCeeEEEEEEcccccCCc
Q 001696 689 GGEKQNGSSAVRDSRIGKVRIRLSTLEAHR 718 (1026)
Q Consensus 689 ~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~ 718 (1026)
+|++||++.|+|++|..+.
T Consensus 81 -----------~dd~IG~~~l~L~~l~~~~ 99 (108)
T cd04039 81 -----------FNDYVATGSLSVQELLNAA 99 (108)
T ss_pred -----------CCcceEEEEEEHHHHHhhC
Confidence 7999999999999997654
No 106
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=99.66 E-value=6.5e-16 Score=147.72 Aligned_cols=101 Identities=28% Similarity=0.431 Sum_probs=88.3
Q ss_pred cc-eeEeeeccccceeEEEEEEEEeecCCCCCC--CCCCCcEEEEEECCe-----eeEeeeecCCCCCeEeEEEEEEecC
Q 001696 271 GE-RFTSTYDLVEQMSYLYVRVVKAKDLPPSSI--TGSCDPYVEVKMGNY-----KGRTKHFEKRMNPEWNQVFAFSKER 342 (1026)
Q Consensus 271 g~-~~~~~y~~~~~~~~L~V~v~~a~~L~~~d~--~g~~dpyv~v~~~~~-----~~kT~~~~~t~nP~wne~f~f~v~~ 342 (1026)
|+ .+++.|.. ..+.|.|+|++|+||..++. .+.+||||+|++... ++||++++++.||+|||+|.|.+..
T Consensus 2 Gel~~sL~Y~~--~~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~ 79 (138)
T cd08407 2 GEVLLSISYLP--AANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPS 79 (138)
T ss_pred CEEEEEEEEeC--CCCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECCH
Confidence 56 89999987 56899999999999999883 345899999998752 5689999999999999999999853
Q ss_pred --CCCCeEEEEEEeCCCCCCCceeEEEEEEccc
Q 001696 343 --IQSSMLEVFLKDKEMVGRDDYLGRVAFDLNE 373 (1026)
Q Consensus 343 --~~~~~L~v~V~d~~~~~~d~~lG~~~i~l~~ 373 (1026)
+....|.|+|||++.++++++||++.+++..
T Consensus 80 ~~L~~~~L~~~V~d~d~~~~~d~iG~v~lg~~~ 112 (138)
T cd08407 80 ELLAASSVELEVLNQDSPGQSLPLGRCSLGLHT 112 (138)
T ss_pred HHhCccEEEEEEEeCCCCcCcceeceEEecCcC
Confidence 4467899999999999999999999999865
No 107
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.66 E-value=1.7e-15 Score=146.22 Aligned_cols=122 Identities=25% Similarity=0.429 Sum_probs=100.0
Q ss_pred EEEEEEEEEeEecCCCCCCCCCCcEEEEEECCeEEEeeeecCCCCCCcccceeEEEeeCC---------CcCeEEEEEEE
Q 001696 448 WYLRVNVIEAQDIVPNDRNRLPEGFVKVQVGNQVLKTKICPTPTTNPLWNEDLVFVAAEP---------FEEQLFLTVED 518 (1026)
Q Consensus 448 ~~l~V~I~~a~~L~~~d~~~~~dpyV~v~lg~~~~kT~~~~~~t~nP~wne~f~f~v~~~---------~~~~L~i~V~d 518 (1026)
++|+|+|++|++|+.++..+.+||||+|.++++.++|+++ +++.||.|||.|.|.+... ....|.|+|||
T Consensus 1 ~~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~v~-~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d 79 (135)
T cd04017 1 FQLRAYIYQARDLLAADKSGLSDPFARVSFLNQSQETEVI-KETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFD 79 (135)
T ss_pred CEEEEEEEEeecCcCCCCCCCCCCEEEEEECCeeeEeeeE-cCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEe
Confidence 3699999999999999999999999999999999999999 7999999999999975432 12479999999
Q ss_pred ccCCCCCceeEEEEE-eCcccccccCCCCccceeEEcccCCCCchhhhhhccccccceEEEEEEec
Q 001696 519 RVHASKDEVLGKISL-PLHIFEKRLDHRPVHSRWFNLEKFGFGAIEADRRKELKFSSRVHLRVCLE 583 (1026)
Q Consensus 519 ~d~~~~d~~lG~~~i-~l~~l~~~~~~~~~~~~w~~L~~~~~~~~~~~~~~~~~~~g~l~l~~~~~ 583 (1026)
++..++|++||++.+ ++..+... .......+|++|...+ ...|+|++++.+.
T Consensus 80 ~d~~~~d~~iG~~~i~~~~~~~~~-~~~~~~~~W~~L~~~~------------~~~Geil~~~~~~ 132 (135)
T cd04017 80 QDSVGKDEFLGRSVAKPLVKLDLE-EDFPPKLQWFPIYKGG------------QSAGELLAAFELI 132 (135)
T ss_pred CcCCCCCccceEEEeeeeeecccC-CCCCCCceEEEeecCC------------CchhheeEEeEEE
Confidence 999899999999987 44333322 2445688999998553 3579999988753
No 108
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.66 E-value=1.6e-15 Score=145.07 Aligned_cols=114 Identities=21% Similarity=0.368 Sum_probs=99.2
Q ss_pred EEEecCCCCCccCCCCCCcCcEEEEEECCEEEEeeeecCCCCceeecEEEEEeeCC---CCEEEEEEEeCCCCCCCCccC
Q 001696 618 ILGAQGLLPMKMKDGRGSTDAYCIAKYGQKWVRTRTILDTFNPKWNEQYTWEVYDP---CTVITLGVFDNCHLGGGEKQN 694 (1026)
Q Consensus 618 v~~a~~L~~~~~~~~~~~~dpyv~v~~g~~~~~T~~~~~t~~P~wne~~~~~v~~~---~~~l~i~v~d~~~~~~~~~~~ 694 (1026)
|++|++|+. ..|.+||||+|.+++..++|++++++.||.|||.|.|++..+ ...|.|+|||++..+
T Consensus 2 vi~a~~L~~-----~~g~~Dpyv~v~~~~~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~------ 70 (127)
T cd08373 2 VVSLKNLPG-----LKGKGDRIAKVTFRGVKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVG------ 70 (127)
T ss_pred eEEeeCCcc-----cCCCCCCEEEEEECCEeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCC------
Confidence 679999986 367899999999999999999999999999999999999764 568999999998864
Q ss_pred CCCCCCCCeeEEEEEEcccccCCceEeeeEeeeecCCCCCccCcEEEEEEEEeec
Q 001696 695 GSSAVRDSRIGKVRIRLSTLEAHRIYTHSYPLLVLHPHGVKKMGELQLAIRFTIF 749 (1026)
Q Consensus 695 ~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~~~ 749 (1026)
++++||++.++|+++..+.....|++|.... +....|+|+++++|.|.
T Consensus 71 -----~d~~iG~~~~~l~~l~~~~~~~~~~~L~~~~--~~~~~~~l~l~~~~~~~ 118 (127)
T cd08373 71 -----RNRLIGSATVSLQDLVSEGLLEVTEPLLDSN--GRPTGATISLEVSYQPP 118 (127)
T ss_pred -----CCceEEEEEEEhhHcccCCceEEEEeCcCCC--CCcccEEEEEEEEEeCC
Confidence 7899999999999999888889999997433 33335999999999764
No 109
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.65 E-value=1e-15 Score=142.61 Aligned_cols=105 Identities=25% Similarity=0.377 Sum_probs=91.8
Q ss_pred ceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeEeeeecCCCCCeEeEEEEEEecCC----CCCeEEEEEEeCCCC
Q 001696 283 QMSYLYVRVVKAKDLPPSSITGSCDPYVEVKMGNYKGRTKHFEKRMNPEWNQVFAFSKERI----QSSMLEVFLKDKEMV 358 (1026)
Q Consensus 283 ~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~----~~~~L~v~V~d~~~~ 358 (1026)
+.+.|+|+|++|++|+ .|.+||||+|++++++++|++++++.||.|||+|.|.+..+ .+..|.|+|||++.+
T Consensus 2 ~~~~l~V~v~~a~~L~----~~~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~~ 77 (111)
T cd04011 2 QDFQVRVRVIEARQLV----GGNIDPVVKVEVGGQKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRSL 77 (111)
T ss_pred CcEEEEEEEEEcccCC----CCCCCCEEEEEECCEeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCccc
Confidence 3468999999999998 56899999999999999999999999999999999997543 246899999999999
Q ss_pred CCCceeEEEEEEccccCCCCCCCCCCCCEEEEeec
Q 001696 359 GRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLED 393 (1026)
Q Consensus 359 ~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~ 393 (1026)
+++++||++.++|+++..... +.....|++|.+
T Consensus 78 ~~~~~iG~~~i~l~~v~~~~~--~~~~~~w~~L~~ 110 (111)
T cd04011 78 RSDTLIGSFKLDVGTVYDQPD--HAFLRKWLLLTD 110 (111)
T ss_pred ccCCccEEEEECCccccCCCC--CcceEEEEEeeC
Confidence 899999999999999976533 446679999976
No 110
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.65 E-value=1.6e-15 Score=144.81 Aligned_cols=102 Identities=25% Similarity=0.373 Sum_probs=89.8
Q ss_pred eEEEEEEEEecCCCCCccCCCCCCcCcEEEEEE---CCEEEEeeeecCCCCceeecEEEEEeeC----CCCEEEEEEEeC
Q 001696 612 GILEVGILGAQGLLPMKMKDGRGSTDAYCIAKY---GQKWVRTRTILDTFNPKWNEQYTWEVYD----PCTVITLGVFDN 684 (1026)
Q Consensus 612 g~L~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~---g~~~~~T~~~~~t~~P~wne~~~~~v~~----~~~~l~i~v~d~ 684 (1026)
+.|.|.|++|+||+.+ +..+.+||||++.+ +....+|++++++.||.|||.|.|.+.. ....|.|+|||+
T Consensus 16 ~~L~v~v~~a~~L~~~---d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~d~ 92 (125)
T cd08386 16 STLTLKILKAVELPAK---DFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQVLDY 92 (125)
T ss_pred CEEEEEEEEecCCCCc---cCCCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHHhCCCEEEEEEEeC
Confidence 6899999999999987 66788999999998 4567999999999999999999998642 245799999999
Q ss_pred CCCCCCCccCCCCCCCCCeeEEEEEEcccccCCceEeeeEeee
Q 001696 685 CHLGGGEKQNGSSAVRDSRIGKVRIRLSTLEAHRIYTHSYPLL 727 (1026)
Q Consensus 685 ~~~~~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~ 727 (1026)
+.++ ++++||.+.|+|+++..+.....||+|.
T Consensus 93 d~~~-----------~~~~iG~~~i~l~~l~~~~~~~~W~~l~ 124 (125)
T cd08386 93 DRFS-----------RNDPIGEVSLPLNKVDLTEEQTFWKDLK 124 (125)
T ss_pred CCCc-----------CCcEeeEEEEecccccCCCCcceEEecC
Confidence 9865 7899999999999999888889999985
No 111
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=99.65 E-value=1.4e-15 Score=140.03 Aligned_cols=97 Identities=22% Similarity=0.359 Sum_probs=85.0
Q ss_pred eEEEEEEEEeecCCCCCCC----CCCCcEEEEEECCeeeEeeeecCCCCCeEeEEEEEEecCC-CCCeEEEEEEeCCCCC
Q 001696 285 SYLYVRVVKAKDLPPSSIT----GSCDPYVEVKMGNYKGRTKHFEKRMNPEWNQVFAFSKERI-QSSMLEVFLKDKEMVG 359 (1026)
Q Consensus 285 ~~L~V~v~~a~~L~~~d~~----g~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~-~~~~L~v~V~d~~~~~ 359 (1026)
|+|.|+|++|++|++.+.. +.+||||+|++++.++||++++++.||+|||.|.|.+.+. ....|.|+|||++.++
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~~~~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d~~~ 80 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRRVFRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKDKFS 80 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECCEeEeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECCCCC
Confidence 5799999999999987632 3589999999999999999999999999999999998543 3458999999999999
Q ss_pred CCceeEEEEEEccccCCCCCCC
Q 001696 360 RDDYLGRVAFDLNEVPTRVPPD 381 (1026)
Q Consensus 360 ~d~~lG~~~i~l~~l~~~~~~~ 381 (1026)
+|++||++.++|.++..+....
T Consensus 81 ~dd~IG~~~l~L~~l~~~~~~~ 102 (108)
T cd04039 81 FNDYVATGSLSVQELLNAAPQP 102 (108)
T ss_pred CCcceEEEEEEHHHHHhhCCCC
Confidence 9999999999999998775543
No 112
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=99.65 E-value=2.3e-15 Score=142.82 Aligned_cols=116 Identities=21% Similarity=0.346 Sum_probs=98.6
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEEC-CeeeEeeeecCCCCCeEeEEEEEEecCCCCCeEEEEEEeCCCCCC--Cce
Q 001696 287 LYVRVVKAKDLPPSSITGSCDPYVEVKMG-NYKGRTKHFEKRMNPEWNQVFAFSKERIQSSMLEVFLKDKEMVGR--DDY 363 (1026)
Q Consensus 287 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~-~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~v~V~d~~~~~~--d~~ 363 (1026)
|+|+|++|++|+..+..+.+||||++.++ .+.++|++++++.||.|||+|.|.+.. ...|.|+|||++.+++ +++
T Consensus 2 l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~--~~~l~i~V~d~~~~~~~~d~~ 79 (123)
T cd08382 2 VRLTVLCADGLAKRDLFRLPDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLTVGP--SSIITIQVFDQKKFKKKDQGF 79 (123)
T ss_pred eEEEEEEecCCCccCCCCCCCcEEEEEECCccceEccEEcCCCCCcccceEEEEeCC--CCEEEEEEEECCCCCCCCCce
Confidence 78999999999999988999999999997 568899999999999999999999965 5799999999998865 589
Q ss_pred eEEEEEEccccCCCCCCCCCCCCEEEEeecCCC--CCcccceEEEEE
Q 001696 364 LGRVAFDLNEVPTRVPPDSPLAPQWYRLEDRRG--EGKVRGQTMLAI 408 (1026)
Q Consensus 364 lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~--~~~~~G~i~l~~ 408 (1026)
||++.+++.++...... ...||+|..... .+...|+|.+++
T Consensus 80 lG~~~i~l~~l~~~~~~----~~~~~~l~~~~~~~~~~~~G~v~~~~ 122 (123)
T cd08382 80 LGCVRIRANAVLPLKDT----GYQRLDLRKLKKSDNLSVRGKIVVSL 122 (123)
T ss_pred EeEEEEEHHHccccCCC----ccceeEeecCCCCCCceEeeEEEEEe
Confidence 99999999998754322 237999977654 345688888764
No 113
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=99.65 E-value=1.5e-15 Score=144.67 Aligned_cols=102 Identities=25% Similarity=0.388 Sum_probs=88.8
Q ss_pred ceEEEEEEEEecCCCCCccCC-CCCCcCcEEEEEEC-----CEEEEeeeecCCCCceeecEEEEEeeCC---CCEEEEEE
Q 001696 611 VGILEVGILGAQGLLPMKMKD-GRGSTDAYCIAKYG-----QKWVRTRTILDTFNPKWNEQYTWEVYDP---CTVITLGV 681 (1026)
Q Consensus 611 ~g~L~v~v~~a~~L~~~~~~~-~~~~~dpyv~v~~g-----~~~~~T~~~~~t~~P~wne~~~~~v~~~---~~~l~i~v 681 (1026)
.|.|.|.|++|+||+.+ + ..+.+||||++.+. ....+|++++++.||.|||.|.|.+... ...|.|+|
T Consensus 13 ~~~L~V~v~~a~~L~~~---~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l~~~~l~i~v 89 (123)
T cd08521 13 TGSLEVHIKECRNLAYA---DEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQLETRTLQLSV 89 (123)
T ss_pred CCEEEEEEEEecCCCCc---CCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHHHhCCCEEEEEE
Confidence 37899999999999987 4 56789999999873 1468999999999999999999998753 55799999
Q ss_pred EeCCCCCCCCccCCCCCCCCCeeEEEEEEcccccCCceEeeeEee
Q 001696 682 FDNCHLGGGEKQNGSSAVRDSRIGKVRIRLSTLEAHRIYTHSYPL 726 (1026)
Q Consensus 682 ~d~~~~~~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L 726 (1026)
||++.++ ++++||.+.|+|+++..+.....||+|
T Consensus 90 ~d~~~~~-----------~~~~iG~~~i~l~~l~~~~~~~~w~~l 123 (123)
T cd08521 90 WHHDRFG-----------RNTFLGEVEIPLDSWDLDSQQSEWYPL 123 (123)
T ss_pred EeCCCCc-----------CCceeeEEEEecccccccCCCccEEEC
Confidence 9998765 789999999999999777777999987
No 114
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=99.64 E-value=2.3e-15 Score=143.39 Aligned_cols=114 Identities=29% Similarity=0.464 Sum_probs=98.7
Q ss_pred eeEeeeccccceeEEEEEEEEeecCCCCC-CCCCCCcEEEEEECC---eeeEeeeecCCCCCeEeEEEEEEecCC--CCC
Q 001696 273 RFTSTYDLVEQMSYLYVRVVKAKDLPPSS-ITGSCDPYVEVKMGN---YKGRTKHFEKRMNPEWNQVFAFSKERI--QSS 346 (1026)
Q Consensus 273 ~~~~~y~~~~~~~~L~V~v~~a~~L~~~d-~~g~~dpyv~v~~~~---~~~kT~~~~~t~nP~wne~f~f~v~~~--~~~ 346 (1026)
.+++.|+. ..+.|.|+|++|+||+..+ ..+.+||||+|++.+ ...+|++++++.||+|||+|.|.+... ...
T Consensus 4 ~~~l~y~~--~~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~~l~~~ 81 (123)
T cd08390 4 WFSVQYDL--EEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKELQRR 81 (123)
T ss_pred EEEEEECC--CCCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHHHhccc
Confidence 78889987 5589999999999999988 678899999999843 467899999999999999999997542 346
Q ss_pred eEEEEEEeCCCCCCCceeEEEEEEccccCCCCCCCCCCCCEEEEeec
Q 001696 347 MLEVFLKDKEMVGRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLED 393 (1026)
Q Consensus 347 ~L~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~ 393 (1026)
.|.|+|||++..+++++||++.++|.++....... .|++|+.
T Consensus 82 ~l~i~v~d~~~~~~~~~iG~~~i~L~~l~~~~~~~-----~w~~L~~ 123 (123)
T cd08390 82 TLRLSVYDVDRFSRHCIIGHVLFPLKDLDLVKGGV-----VWRDLEP 123 (123)
T ss_pred EEEEEEEECCcCCCCcEEEEEEEeccceecCCCce-----EEEeCCC
Confidence 89999999999889999999999999998776554 8999863
No 115
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=99.64 E-value=1.3e-15 Score=150.95 Aligned_cols=116 Identities=25% Similarity=0.409 Sum_probs=97.5
Q ss_pred eeEeeecccc----------ceeEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeeeEeeeecCCCCCeEeEEEE
Q 001696 273 RFTSTYDLVE----------QMSYLYVRVVKAKDLPPSSITGSCDPYVEVKMG-----NYKGRTKHFEKRMNPEWNQVFA 337 (1026)
Q Consensus 273 ~~~~~y~~~~----------~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~-----~~~~kT~~~~~t~nP~wne~f~ 337 (1026)
.+++.|.... ..+.|.|+|++|+||+..+..|.+||||+|.+. ..+++|++++++.||.|||+|.
T Consensus 5 ~~~l~y~~~~~~~~~~~~~~~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~WnE~f~ 84 (162)
T cd04020 5 KVALKYVPPESEGALKSKKPSTGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFV 84 (162)
T ss_pred EEEEEecCccccccccccCCCCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCCCEEE
Confidence 6777777633 458999999999999999988999999999984 2478999999999999999999
Q ss_pred EEec---CCCCCeEEEEEEeCCCCCCCceeEEEEEEccccCCCCCCCCCCCCEEEEeec
Q 001696 338 FSKE---RIQSSMLEVFLKDKEMVGRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLED 393 (1026)
Q Consensus 338 f~v~---~~~~~~L~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~ 393 (1026)
|.+. +.....|.|+|||++.++++++||++.+++.++......+ .|+.+..
T Consensus 85 f~~~~~~~l~~~~L~i~V~d~d~~~~d~~lG~v~i~l~~~~~~~~~~-----~w~~~~~ 138 (162)
T cd04020 85 YDGVSPEDLSQACLELTVWDHDKLSSNDFLGGVRLGLGTGKSYGQAV-----DWMDSTG 138 (162)
T ss_pred EecCCHHHhCCCEEEEEEEeCCCCCCCceEEEEEEeCCccccCCCcc-----ccccCCh
Confidence 9852 3335689999999999989999999999999987654433 8887764
No 116
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=99.64 E-value=8.3e-16 Score=143.03 Aligned_cols=99 Identities=28% Similarity=0.389 Sum_probs=86.6
Q ss_pred eEEEEEEEEecCCCCCccCCCC-CCcCcEEEEEEC---CEEEEeeeecCCCCceeecEEEEEeeCC----CCEEEEEEEe
Q 001696 612 GILEVGILGAQGLLPMKMKDGR-GSTDAYCIAKYG---QKWVRTRTILDTFNPKWNEQYTWEVYDP----CTVITLGVFD 683 (1026)
Q Consensus 612 g~L~v~v~~a~~L~~~~~~~~~-~~~dpyv~v~~g---~~~~~T~~~~~t~~P~wne~~~~~v~~~----~~~l~i~v~d 683 (1026)
|.|+|+|++|++|+.+ +.. +.+||||+|.+. ...++|+++++++||.|||.|.|.+..+ ...|.|+|||
T Consensus 1 G~L~V~v~~a~~L~~~---d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d 77 (111)
T cd04041 1 GVLVVTIHRATDLPKA---DFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWD 77 (111)
T ss_pred CEEEEEEEEeeCCCcc---cCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEe
Confidence 7899999999999987 556 899999999983 3568999999999999999999988653 5689999999
Q ss_pred CCCCCCCCccCCCCCCCCCeeEEEEEEcccccCCceEeeeEeee
Q 001696 684 NCHLGGGEKQNGSSAVRDSRIGKVRIRLSTLEAHRIYTHSYPLL 727 (1026)
Q Consensus 684 ~~~~~~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~ 727 (1026)
++.++ +|++||++.|+|++|... .+||++.
T Consensus 78 ~d~~~-----------~dd~lG~~~i~l~~l~~~---~~~~~~~ 107 (111)
T cd04041 78 SDRFT-----------ADDRLGRVEIDLKELIED---RNWMGRR 107 (111)
T ss_pred CCCCC-----------CCCcceEEEEEHHHHhcC---CCCCccc
Confidence 99865 789999999999999754 5899875
No 117
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=99.64 E-value=9.6e-17 Score=169.47 Aligned_cols=104 Identities=27% Similarity=0.535 Sum_probs=93.9
Q ss_pred ceEEEEeecCCCccCCCCCCCCCEEEEEe-----CCceeeeccCCCCCCcccceeEEEeccCCCCCccceEEEEEeeCCC
Q 001696 2 KLVVEVVDAYDLMPKDGEGSASPFAEVDF-----LNQLSKTKTIPKNLNPVWNQKLLFDFDQTKSHNHLRIEVSIYHHER 76 (1026)
Q Consensus 2 ~L~V~v~~a~~L~~~~~~g~~dpyv~v~~-----~~~~~~T~~~~~t~nP~Wne~f~f~~~~~~~~~~~~L~~~V~d~d~ 76 (1026)
.|+|+|.+|+||.++|-+|.+||||++.+ +..+++|++++.|+||+|||+|+|.+.+.+. ...|.|+|||||+
T Consensus 181 ~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf~Lkp~Dk--drRlsiEvWDWDr 258 (683)
T KOG0696|consen 181 VLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTFKLKPSDK--DRRLSIEVWDWDR 258 (683)
T ss_pred eEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCccccceeEEecccccc--cceeEEEEecccc
Confidence 58999999999999999999999999999 2368899999999999999999999988664 3689999999999
Q ss_pred CCCCCCccceeEEecCccccccCCceeEEeecccc
Q 001696 77 RPIPGRHFLGRVRIPCSNLVRKGEEVYQRFPLEKK 111 (1026)
Q Consensus 77 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~ 111 (1026)
.+ ++||+|...+.+++|...+ ...||.|-..
T Consensus 259 Ts--RNDFMGslSFgisEl~K~p--~~GWyKlLsq 289 (683)
T KOG0696|consen 259 TS--RNDFMGSLSFGISELQKAP--VDGWYKLLSQ 289 (683)
T ss_pred cc--cccccceecccHHHHhhcc--hhhHHHHhhh
Confidence 65 8999999999999999775 6889999765
No 118
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=99.63 E-value=1.6e-15 Score=140.92 Aligned_cols=105 Identities=30% Similarity=0.515 Sum_probs=92.5
Q ss_pred EEEEEEEeEecCCCCC-CCCCCcEEEEEECCeEEEeeeecCCCCCCcc-cceeEEEeeCC--CcCeEEEEEEEccCCCCC
Q 001696 450 LRVNVIEAQDIVPNDR-NRLPEGFVKVQVGNQVLKTKICPTPTTNPLW-NEDLVFVAAEP--FEEQLFLTVEDRVHASKD 525 (1026)
Q Consensus 450 l~V~I~~a~~L~~~d~-~~~~dpyV~v~lg~~~~kT~~~~~~t~nP~w-ne~f~f~v~~~--~~~~L~i~V~d~d~~~~d 525 (1026)
|.|+|++|++|+.++. .+.+||||+++++++.+||+++ +++.||.| ||.|.|.+... .+..|.|+|||++..+++
T Consensus 1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~kT~v~-~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~~~ 79 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGSTTYKTDVV-KKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYSAN 79 (110)
T ss_pred CEEEEEEEECCCccccCCCCCCceEEEEECCeeEeccee-cCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCCCC
Confidence 5799999999998884 6789999999999999999999 79999999 99999998664 356899999999999999
Q ss_pred ceeEEEEEeCcccccccCCCCccceeEEccc
Q 001696 526 EVLGKISLPLHIFEKRLDHRPVHSRWFNLEK 556 (1026)
Q Consensus 526 ~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~~ 556 (1026)
++||++.+++.++... ......+.||+|.+
T Consensus 80 ~~iG~~~~~l~~l~~~-~~~~~~~~w~~l~~ 109 (110)
T cd08688 80 DAIGKVYIDLNPLLLK-DSVSQISGWFPIYD 109 (110)
T ss_pred CceEEEEEeHHHhccc-CCccccCCeEEccc
Confidence 9999999999999864 23345889999975
No 119
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=99.63 E-value=1.2e-15 Score=147.07 Aligned_cols=106 Identities=28% Similarity=0.474 Sum_probs=91.0
Q ss_pred eEEEEeecCCCccCCCCCCCCCEEEEEeC----CceeeeccCCCCCCcccceeEEEeccCCC------------CCccce
Q 001696 3 LVVEVVDAYDLMPKDGEGSASPFAEVDFL----NQLSKTKTIPKNLNPVWNQKLLFDFDQTK------------SHNHLR 66 (1026)
Q Consensus 3 L~V~v~~a~~L~~~~~~g~~dpyv~v~~~----~~~~~T~~~~~t~nP~Wne~f~f~~~~~~------------~~~~~~ 66 (1026)
|+|+|++|++|+.+ ..|.+||||+|+++ +.+++|++++++.||.|||+|.|.+.... ......
T Consensus 1 L~V~Vi~A~~L~~~-~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~ 79 (137)
T cd08675 1 LSVRVLECRDLALK-SNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSE 79 (137)
T ss_pred CEEEEEEccCCCcc-cCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccE
Confidence 68999999999888 78899999999997 78899999999999999999999987651 223468
Q ss_pred EEEEEeeCCCCCCCCCccceeEEecCccccccCCceeEEeeccccc
Q 001696 67 IEVSIYHHERRPIPGRHFLGRVRIPCSNLVRKGEEVYQRFPLEKKW 112 (1026)
Q Consensus 67 L~~~V~d~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~ 112 (1026)
|.|+|||++.. +.++|||++.+++.++...+ ....||+|++++
T Consensus 80 l~i~V~d~~~~--~~~~~IG~~~i~l~~l~~~~-~~~~W~~L~~~~ 122 (137)
T cd08675 80 LRVELWHASMV--SGDDFLGEVRIPLQGLQQAG-SHQAWYFLQPRE 122 (137)
T ss_pred EEEEEEcCCcC--cCCcEEEEEEEehhhccCCC-cccceEecCCcC
Confidence 99999995543 47999999999999987554 378999999875
No 120
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.63 E-value=1.7e-15 Score=146.98 Aligned_cols=104 Identities=25% Similarity=0.349 Sum_probs=87.1
Q ss_pred EEEEEEEEecCCCCCccC-----------CCCCCcCcEEEEEECCEEEEeeeecCCCCceeecEEEEEeeCC--CCEEEE
Q 001696 613 ILEVGILGAQGLLPMKMK-----------DGRGSTDAYCIAKYGQKWVRTRTILDTFNPKWNEQYTWEVYDP--CTVITL 679 (1026)
Q Consensus 613 ~L~v~v~~a~~L~~~~~~-----------~~~~~~dpyv~v~~g~~~~~T~~~~~t~~P~wne~~~~~v~~~--~~~l~i 679 (1026)
.|.|+|++|++|+.++.. +..+.+||||+|.++++..||++++++.||+|||.|.|++..+ ...|.|
T Consensus 1 ~~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~~~kT~v~~~t~nPvWNE~f~f~v~~p~~~~~l~~ 80 (151)
T cd04018 1 RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQKVKTSVKKNSYNPEWNEQIVFPEMFPPLCERIKI 80 (151)
T ss_pred CeEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECCEeeecceEcCCCCCCcceEEEEEeeCCCcCCEEEE
Confidence 378999999999998531 1235789999999999999999999999999999999998754 568999
Q ss_pred EEEeCCCCCCCCccCCCCCCCCCeeEEEEEEcccccCCce-------EeeeEeee
Q 001696 680 GVFDNCHLGGGEKQNGSSAVRDSRIGKVRIRLSTLEAHRI-------YTHSYPLL 727 (1026)
Q Consensus 680 ~v~d~~~~~~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~-------~~~~~~L~ 727 (1026)
+|||++..+ +|++||++.|+|.++..... -.+||.|.
T Consensus 81 ~v~D~d~~~-----------~dd~iG~~~l~l~~l~~~~~~~~lp~~~p~W~~ly 124 (151)
T cd04018 81 QIRDWDRVG-----------NDDVIGTHFIDLSKISNSGDEGFLPTFGPSFVNLY 124 (151)
T ss_pred EEEECCCCC-----------CCCEEEEEEEeHHHhccCCccccCCccCceEEEee
Confidence 999999865 79999999999999865431 24677765
No 121
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.63 E-value=4.9e-15 Score=141.76 Aligned_cols=116 Identities=26% Similarity=0.414 Sum_probs=100.7
Q ss_pred EEEeecCCCCCCCCCCCcEEEEEECCeeeEeeeecCCCCCeEeEEEEEEecCC--CCCeEEEEEEeCCCCCCCceeEEEE
Q 001696 291 VVKAKDLPPSSITGSCDPYVEVKMGNYKGRTKHFEKRMNPEWNQVFAFSKERI--QSSMLEVFLKDKEMVGRDDYLGRVA 368 (1026)
Q Consensus 291 v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~--~~~~L~v~V~d~~~~~~d~~lG~~~ 368 (1026)
|++|++|+. ..|.+||||+|.+++.+++|++++++.||+|||+|.|.+... ....|.|+|||++..+++++||++.
T Consensus 2 vi~a~~L~~--~~g~~Dpyv~v~~~~~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~~~ 79 (127)
T cd08373 2 VVSLKNLPG--LKGKGDRIAKVTFRGVKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNRLIGSAT 79 (127)
T ss_pred eEEeeCCcc--cCCCCCCEEEEEECCEeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCCceEEEEE
Confidence 689999988 678899999999999999999999999999999999998653 4689999999999998999999999
Q ss_pred EEccccCCCCCCCCCCCCEEEEeecCCCCCcccceEEEEEEecccC
Q 001696 369 FDLNEVPTRVPPDSPLAPQWYRLEDRRGEGKVRGQTMLAIWMGTQA 414 (1026)
Q Consensus 369 i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~~~ 414 (1026)
+++.++..+.... .|++|.+.++. ...|+|+++++|.+..
T Consensus 80 ~~l~~l~~~~~~~-----~~~~L~~~~~~-~~~~~l~l~~~~~~~~ 119 (127)
T cd08373 80 VSLQDLVSEGLLE-----VTEPLLDSNGR-PTGATISLEVSYQPPD 119 (127)
T ss_pred EEhhHcccCCceE-----EEEeCcCCCCC-cccEEEEEEEEEeCCC
Confidence 9999998764433 89999876553 4579999999987654
No 122
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=99.63 E-value=1.5e-15 Score=141.29 Aligned_cols=101 Identities=30% Similarity=0.464 Sum_probs=88.0
Q ss_pred eEEEEEEEEeecCCCCCCC-CCCCcEEEEEECC---eeeEeeeecCCCCCeEeEEEEEEecCC---CCCeEEEEEEeCCC
Q 001696 285 SYLYVRVVKAKDLPPSSIT-GSCDPYVEVKMGN---YKGRTKHFEKRMNPEWNQVFAFSKERI---QSSMLEVFLKDKEM 357 (1026)
Q Consensus 285 ~~L~V~v~~a~~L~~~d~~-g~~dpyv~v~~~~---~~~kT~~~~~t~nP~wne~f~f~v~~~---~~~~L~v~V~d~~~ 357 (1026)
|+|+|+|++|++|+..+.. +.+||||+|.+.+ ...+|++++++.||+|||+|.|.+... ....|.|+|||++.
T Consensus 1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~ 80 (111)
T cd04041 1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDR 80 (111)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCC
Confidence 5799999999999999987 8999999999853 368999999999999999999987543 35689999999999
Q ss_pred CCCCceeEEEEEEccccCCCCCCCCCCCCEEEEeec
Q 001696 358 VGRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLED 393 (1026)
Q Consensus 358 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~ 393 (1026)
+++|++||++.+++.++.... .|+++..
T Consensus 81 ~~~dd~lG~~~i~l~~l~~~~--------~~~~~~~ 108 (111)
T cd04041 81 FTADDRLGRVEIDLKELIEDR--------NWMGRRE 108 (111)
T ss_pred CCCCCcceEEEEEHHHHhcCC--------CCCcccc
Confidence 999999999999999998432 7887753
No 123
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.63 E-value=4.6e-15 Score=141.57 Aligned_cols=120 Identities=25% Similarity=0.318 Sum_probs=99.5
Q ss_pred eEEEEEEEEeecCCCCC-CCCCCCcEEEEEECC--eeeEeeeecCCCCCeEeEEEEEEecCCCCCeEEEEEEeCCCCCCC
Q 001696 285 SYLYVRVVKAKDLPPSS-ITGSCDPYVEVKMGN--YKGRTKHFEKRMNPEWNQVFAFSKERIQSSMLEVFLKDKEMVGRD 361 (1026)
Q Consensus 285 ~~L~V~v~~a~~L~~~d-~~g~~dpyv~v~~~~--~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~v~V~d~~~~~~d 361 (1026)
|.|+|+|++|++|+..+ ..+.+||||++++++ ...+|++++++.||.|||.|.|.+.. ....|.|+|||++..+++
T Consensus 2 g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~~~~~v~~-~~~~l~~~v~d~~~~~~d 80 (124)
T cd04044 2 GVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVNS-LTEPLNLTVYDFNDKRKD 80 (124)
T ss_pred eEEEEEEEcccCCCcccccCCCCCCeEEEEECCCCcceEeeeecCCCCCcceEEEEEEeCC-CCCEEEEEEEecCCCCCC
Confidence 68999999999999765 346789999999998 68999999999999999999999873 467999999999998899
Q ss_pred ceeEEEEEEccccCCCCCCCCCCCCEEEEeecCCCCCcccceEEEEEEecc
Q 001696 362 DYLGRVAFDLNEVPTRVPPDSPLAPQWYRLEDRRGEGKVRGQTMLAIWMGT 412 (1026)
Q Consensus 362 ~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~ 412 (1026)
++||++.+++.++......+ ..|+.+.. .++..|+|++++.|.+
T Consensus 81 ~~iG~~~~~l~~l~~~~~~~----~~~~~~~~---~~k~~G~i~~~l~~~p 124 (124)
T cd04044 81 KLIGTAEFDLSSLLQNPEQE----NLTKNLLR---NGKPVGELNYDLRFFP 124 (124)
T ss_pred ceeEEEEEEHHHhccCcccc----Ccchhhhc---CCccceEEEEEEEeCC
Confidence 99999999999998764432 13444432 2356799999998753
No 124
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=99.62 E-value=6.1e-15 Score=142.86 Aligned_cols=116 Identities=23% Similarity=0.342 Sum_probs=93.5
Q ss_pred EEEEEEEecC--CCCCccCCCCCCcCcEEEEEE-----CCEEEEeeeecCCCCceeecEEEEEeeCC---------CCEE
Q 001696 614 LEVGILGAQG--LLPMKMKDGRGSTDAYCIAKY-----GQKWVRTRTILDTFNPKWNEQYTWEVYDP---------CTVI 677 (1026)
Q Consensus 614 L~v~v~~a~~--L~~~~~~~~~~~~dpyv~v~~-----g~~~~~T~~~~~t~~P~wne~~~~~v~~~---------~~~l 677 (1026)
..++|..|+| |+.. +..+.+||||++++ +.++.||+++++|+||+|||+|.|.|... ...|
T Consensus 4 ~el~i~~~~~~~l~~~---~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L 80 (155)
T cd08690 4 IELTIVRCIGIPLPSG---WNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGL 80 (155)
T ss_pred eEEEEEEeeccccCCC---cCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcE
Confidence 4456666666 6655 55778999999986 35689999999999999999999999654 3469
Q ss_pred EEEEEeCCCCCCCCccCCCCCCCCCeeEEEEEEcccccCCceEeeeEeeeecCCCCCc-cCcEEEEEEEE
Q 001696 678 TLGVFDNCHLGGGEKQNGSSAVRDSRIGKVRIRLSTLEAHRIYTHSYPLLVLHPHGVK-KMGELQLAIRF 746 (1026)
Q Consensus 678 ~i~v~d~~~~~~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~-~~G~i~l~~~f 746 (1026)
.|+|||++.+. .+|++||++.|+|+.+..+.....|++|.. |.+ ..|.|+++++-
T Consensus 81 ~~~V~d~~~f~----------~~D~~iG~~~i~L~~l~~~~~~~~~~~L~~----~~k~~Gg~l~v~ir~ 136 (155)
T cd08690 81 KFEVYHKGGFL----------RSDKLLGTAQVKLEPLETKCEIHESVDLMD----GRKATGGKLEVKVRL 136 (155)
T ss_pred EEEEEeCCCcc----------cCCCeeEEEEEEcccccccCcceEEEEhhh----CCCCcCCEEEEEEEe
Confidence 99999998753 369999999999999988877788999972 333 36899999885
No 125
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=99.62 E-value=1.9e-15 Score=144.24 Aligned_cols=118 Identities=22% Similarity=0.295 Sum_probs=101.7
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECC-eeeEeeeec-CCCCCeEeEEEEEEecCCC----CCeEEEEEEeCCCCCC
Q 001696 287 LYVRVVKAKDLPPSSITGSCDPYVEVKMGN-YKGRTKHFE-KRMNPEWNQVFAFSKERIQ----SSMLEVFLKDKEMVGR 360 (1026)
Q Consensus 287 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~-~~~kT~~~~-~t~nP~wne~f~f~v~~~~----~~~L~v~V~d~~~~~~ 360 (1026)
|+|+|++|++|+..+..+.+||||+|++++ ++++|+++. ++.||.|||+|.|.+.... ...|.|+|||++.+++
T Consensus 2 L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~~~~ 81 (125)
T cd04051 2 LEITIISAEDLKNVNLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERPSLG 81 (125)
T ss_pred EEEEEEEcccCCCCCcccCCceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCCCCC
Confidence 789999999999988888999999999998 789999975 5899999999999987653 5789999999999889
Q ss_pred CceeEEEEEEccccCCCCCCCCCCCCEEEEeecCCCCCcccceEEE
Q 001696 361 DDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLEDRRGEGKVRGQTML 406 (1026)
Q Consensus 361 d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~l 406 (1026)
+++||++.+++.++......+.+....||+|...++ +..|.|++
T Consensus 82 ~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~g--~~~G~~~~ 125 (125)
T cd04051 82 DKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPSG--KPQGVLNF 125 (125)
T ss_pred CCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCCC--CcCeEEeC
Confidence 999999999999998776543334568999998664 57888864
No 126
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=99.62 E-value=1.9e-15 Score=144.73 Aligned_cols=101 Identities=27% Similarity=0.326 Sum_probs=88.8
Q ss_pred cc-eeEeeeccccceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeEeeeecCCCCCeEeEEEEEEecC--
Q 001696 271 GE-RFTSTYDLVEQMSYLYVRVVKAKDLPPSSITGSCDPYVEVKMGN-----YKGRTKHFEKRMNPEWNQVFAFSKER-- 342 (1026)
Q Consensus 271 g~-~~~~~y~~~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~-----~~~kT~~~~~t~nP~wne~f~f~v~~-- 342 (1026)
|+ ++++.|.. ....|.|+|++|+||+..+..|.+||||+|++.+ .+.||++++++.||+|||+|.|.+..
T Consensus 2 G~i~~sL~Y~~--~~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~ 79 (136)
T cd08406 2 GEILLSLSYLP--TAERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAIV 79 (136)
T ss_pred cEEEEEEEEcC--CCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHHH
Confidence 45 88999987 5589999999999999999889999999999953 25689999999999999999999853
Q ss_pred CCCCeEEEEEEeCCCCCCCceeEEEEEEccc
Q 001696 343 IQSSMLEVFLKDKEMVGRDDYLGRVAFDLNE 373 (1026)
Q Consensus 343 ~~~~~L~v~V~d~~~~~~d~~lG~~~i~l~~ 373 (1026)
..+..|.|+|||++.++++++||++.|....
T Consensus 80 l~~~~l~~~V~~~d~~~~~~~iG~v~lg~~~ 110 (136)
T cd08406 80 LQDLSLRVTVAESTEDGKTPNVGHVIIGPAA 110 (136)
T ss_pred hCCcEEEEEEEeCCCCCCCCeeEEEEECCCC
Confidence 4578999999999999999999999997654
No 127
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.62 E-value=1.1e-14 Score=140.31 Aligned_cols=116 Identities=23% Similarity=0.432 Sum_probs=98.1
Q ss_pred eEEEEEEEEeecCCCCCCC----------CCCCcEEEEEECCee-eEeeeecCCCCCeEeEEEEEEecCCCCCeEEEEEE
Q 001696 285 SYLYVRVVKAKDLPPSSIT----------GSCDPYVEVKMGNYK-GRTKHFEKRMNPEWNQVFAFSKERIQSSMLEVFLK 353 (1026)
Q Consensus 285 ~~L~V~v~~a~~L~~~d~~----------g~~dpyv~v~~~~~~-~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~v~V~ 353 (1026)
|.|+|+|++|++|...+.. |.+||||++.+++++ .+|++++++.||.|||+|.|.+.+ ...|.|.||
T Consensus 4 g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~--~~~l~~~v~ 81 (132)
T cd04014 4 GTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPKTNSPVWNEEFTTEVHN--GRNLELTVF 81 (132)
T ss_pred eEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEEeEEeEcCCCCCCCcceeEEEEcCC--CCEEEEEEE
Confidence 6899999999999988752 579999999999865 699999999999999999999963 578999999
Q ss_pred eCCCCCCCceeEEEEEEccccCCCCCCCCCCCCEEEEeecCCCCCcccceEEEEEEecc
Q 001696 354 DKEMVGRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLEDRRGEGKVRGQTMLAIWMGT 412 (1026)
Q Consensus 354 d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~ 412 (1026)
|++.++.+++||++.++|.++..... .....|++|.. .|+|++.+.+..
T Consensus 82 d~~~~~~~~~iG~~~i~l~~l~~~~~---~~~~~w~~L~~-------~G~l~l~~~~~~ 130 (132)
T cd04014 82 HDAAIGPDDFVANCTISFEDLIQRGS---GSFDLWVDLEP-------QGKLHVKIELKG 130 (132)
T ss_pred eCCCCCCCceEEEEEEEhHHhcccCC---CcccEEEEccC-------CcEEEEEEEEec
Confidence 99988899999999999999887311 12349999973 389999887653
No 128
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=99.62 E-value=6.4e-15 Score=146.04 Aligned_cols=131 Identities=24% Similarity=0.298 Sum_probs=105.1
Q ss_pred cceEEEEEEecccCchhhhhcccccCccccCCCccccccccccCCceEEEEEEEEEeEecCCCCCCCCCCcEEEEEE---
Q 001696 401 RGQTMLAIWMGTQADEAFAEAWHSDASSVYGEGVFNIRSKVYVSPKLWYLRVNVIEAQDIVPNDRNRLPEGFVKVQV--- 477 (1026)
Q Consensus 401 ~G~i~l~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~~r~~~~~~p~~~~l~V~I~~a~~L~~~d~~~~~dpyV~v~l--- 477 (1026)
+|+|.+++.|.+...+... ....+..+.|+|+|++|+||+..+..+.+||||+|++
T Consensus 1 ~G~l~~~l~y~~~~~~~~~---------------------~~~~~~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~ 59 (162)
T cd04020 1 RGELKVALKYVPPESEGAL---------------------KSKKPSTGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPD 59 (162)
T ss_pred CceEEEEEEecCccccccc---------------------cccCCCCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcC
Confidence 4999999999886542111 0112345689999999999999998899999999998
Q ss_pred --CCeEEEeeeecCCCCCCcccceeEEEeeCC---CcCeEEEEEEEccCCCCCceeEEEEEeCcccccccCCCCccceeE
Q 001696 478 --GNQVLKTKICPTPTTNPLWNEDLVFVAAEP---FEEQLFLTVEDRVHASKDEVLGKISLPLHIFEKRLDHRPVHSRWF 552 (1026)
Q Consensus 478 --g~~~~kT~~~~~~t~nP~wne~f~f~v~~~---~~~~L~i~V~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~ 552 (1026)
+.+.+||+++ +++.||.|||.|.|.+... .+..|.|+|||++.++++++||++.+++.++... .....|+
T Consensus 60 ~~~~~~~kT~vi-~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~d~d~~~~d~~lG~v~i~l~~~~~~----~~~~~w~ 134 (162)
T cd04020 60 KSKKSKQKTPVV-KKSVNPVWNHTFVYDGVSPEDLSQACLELTVWDHDKLSSNDFLGGVRLGLGTGKSY----GQAVDWM 134 (162)
T ss_pred CCCCcceeCCcc-CCCCCCCCCCEEEEecCCHHHhCCCEEEEEEEeCCCCCCCceEEEEEEeCCccccC----CCccccc
Confidence 3468899999 7999999999999985322 3458999999999988999999999999998644 2367898
Q ss_pred EcccC
Q 001696 553 NLEKF 557 (1026)
Q Consensus 553 ~L~~~ 557 (1026)
.+.+.
T Consensus 135 ~~~~~ 139 (162)
T cd04020 135 DSTGE 139 (162)
T ss_pred cCChH
Confidence 88754
No 129
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=99.62 E-value=5.9e-15 Score=142.74 Aligned_cols=92 Identities=33% Similarity=0.562 Sum_probs=84.6
Q ss_pred ceEEEEEEEEecCCCCCccCCCCCCcCcEEEEEECCEEEEeeeecCCCCceeecEEEEEeeCCCCEEEEEEEeCCCCCCC
Q 001696 611 VGILEVGILGAQGLLPMKMKDGRGSTDAYCIAKYGQKWVRTRTILDTFNPKWNEQYTWEVYDPCTVITLGVFDNCHLGGG 690 (1026)
Q Consensus 611 ~g~L~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~g~~~~~T~~~~~t~~P~wne~~~~~v~~~~~~l~i~v~d~~~~~~~ 690 (1026)
+|.|+|.|++|+||+.. +. +.+||||+++++++.++|++++++.||.|||.|.|.+.++...|.|+|||++.++
T Consensus 1 ~G~L~V~Vi~a~nL~~~---d~-~~sDPYV~v~~g~~~~kT~vvk~t~nP~WnE~f~f~i~~~~~~l~~~V~D~d~~~-- 74 (145)
T cd04038 1 LGLLKVRVVRGTNLAVR---DF-TSSDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVPNPMAPLKLEVFDKDTFS-- 74 (145)
T ss_pred CeEEEEEEEeeECCCCC---CC-CCcCcEEEEEECCEEEEeeeEcCCCCCeecccEEEEecCCCCEEEEEEEECCCCC--
Confidence 48999999999999876 44 7899999999999999999999999999999999999999889999999999875
Q ss_pred CccCCCCCCCCCeeEEEEEEcccccCC
Q 001696 691 EKQNGSSAVRDSRIGKVRIRLSTLEAH 717 (1026)
Q Consensus 691 ~~~~~~~~~~~~~lG~~~i~l~~l~~~ 717 (1026)
+|++||.+.++|.++...
T Consensus 75 ---------~dd~iG~a~i~l~~l~~~ 92 (145)
T cd04038 75 ---------KDDSMGEAEIDLEPLVEA 92 (145)
T ss_pred ---------CCCEEEEEEEEHHHhhhh
Confidence 789999999999998543
No 130
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=99.61 E-value=7.2e-15 Score=139.92 Aligned_cols=103 Identities=20% Similarity=0.263 Sum_probs=89.9
Q ss_pred ceEEEEEEEEecCCCCCccCC-CCCCcCcEEEEEE---CCEEEEeeeecCCCCceeecEEEEEeeCC---CCEEEEEEEe
Q 001696 611 VGILEVGILGAQGLLPMKMKD-GRGSTDAYCIAKY---GQKWVRTRTILDTFNPKWNEQYTWEVYDP---CTVITLGVFD 683 (1026)
Q Consensus 611 ~g~L~v~v~~a~~L~~~~~~~-~~~~~dpyv~v~~---g~~~~~T~~~~~t~~P~wne~~~~~v~~~---~~~l~i~v~d 683 (1026)
.+.|.|.|++|+||+.+ + ..+.+||||++++ +....+|++++++.||.|||.|.|.+... ...|.|.|||
T Consensus 13 ~~~L~V~v~~a~~L~~~---~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~~l~~~~l~i~v~d 89 (123)
T cd08390 13 EEQLTVSLIKARNLPPR---TKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKELQRRTLRLSVYD 89 (123)
T ss_pred CCEEEEEEEEecCCCCc---cCCCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHHHhcccEEEEEEEE
Confidence 37899999999999987 4 4678999999998 34568999999999999999999998753 4579999999
Q ss_pred CCCCCCCCccCCCCCCCCCeeEEEEEEcccccCCceEeeeEeee
Q 001696 684 NCHLGGGEKQNGSSAVRDSRIGKVRIRLSTLEAHRIYTHSYPLL 727 (1026)
Q Consensus 684 ~~~~~~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~ 727 (1026)
++..+ ++++||++.|+|+++........|++|.
T Consensus 90 ~~~~~-----------~~~~iG~~~i~L~~l~~~~~~~~w~~L~ 122 (123)
T cd08390 90 VDRFS-----------RHCIIGHVLFPLKDLDLVKGGVVWRDLE 122 (123)
T ss_pred CCcCC-----------CCcEEEEEEEeccceecCCCceEEEeCC
Confidence 98754 7899999999999998888788999984
No 131
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.61 E-value=4.2e-15 Score=144.33 Aligned_cols=108 Identities=24% Similarity=0.368 Sum_probs=93.0
Q ss_pred EEEEEEEeEecCCCCCCC--------------CCCcEEEEEECCeEEEeeeecCCCCCCcccceeEEEeeCC-CcCeEEE
Q 001696 450 LRVNVIEAQDIVPNDRNR--------------LPEGFVKVQVGNQVLKTKICPTPTTNPLWNEDLVFVAAEP-FEEQLFL 514 (1026)
Q Consensus 450 l~V~I~~a~~L~~~d~~~--------------~~dpyV~v~lg~~~~kT~~~~~~t~nP~wne~f~f~v~~~-~~~~L~i 514 (1026)
|.|+|++|++|+.+|.++ .+||||+|.++++..+|+++ +++.||+|||.|.|.+..+ ..+.|.|
T Consensus 2 ~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~~~kT~v~-~~t~nPvWNE~f~f~v~~p~~~~~l~~ 80 (151)
T cd04018 2 FIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQKVKTSVK-KNSYNPEWNEQIVFPEMFPPLCERIKI 80 (151)
T ss_pred eEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECCEeeecceE-cCCCCCCcceEEEEEeeCCCcCCEEEE
Confidence 789999999999988543 68999999999999999999 7999999999999997654 4569999
Q ss_pred EEEEccCCCCCceeEEEEEeCcccccccCCC---CccceeEEcccCC
Q 001696 515 TVEDRVHASKDEVLGKISLPLHIFEKRLDHR---PVHSRWFNLEKFG 558 (1026)
Q Consensus 515 ~V~d~d~~~~d~~lG~~~i~l~~l~~~~~~~---~~~~~w~~L~~~~ 558 (1026)
+|||+|..++|++||++.+++.++....... ...++|+.|+++.
T Consensus 81 ~v~D~d~~~~dd~iG~~~l~l~~l~~~~~~~~lp~~~p~W~~lyg~~ 127 (151)
T cd04018 81 QIRDWDRVGNDDVIGTHFIDLSKISNSGDEGFLPTFGPSFVNLYGSP 127 (151)
T ss_pred EEEECCCCCCCCEEEEEEEeHHHhccCCccccCCccCceEEEeecCc
Confidence 9999999899999999999999987642211 2567999999885
No 132
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=99.61 E-value=4.8e-15 Score=139.57 Aligned_cols=95 Identities=25% Similarity=0.367 Sum_probs=84.2
Q ss_pred CCCceEEEEEEEEecCCCCCccCCCCCCcCcEEEEEECCEEEEeeeecCCCCceeecEEEEEeeC--CCCEEEEEEEeCC
Q 001696 608 KPPVGILEVGILGAQGLLPMKMKDGRGSTDAYCIAKYGQKWVRTRTILDTFNPKWNEQYTWEVYD--PCTVITLGVFDNC 685 (1026)
Q Consensus 608 ~~~~g~L~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~g~~~~~T~~~~~t~~P~wne~~~~~v~~--~~~~l~i~v~d~~ 685 (1026)
...+|.|+|.|++|+||+. +..+.+||||+|+++++.+||++++++.||+|||.|.|.... ....|.|+|||++
T Consensus 24 ~~~~~~L~V~V~~A~~L~~----d~~g~~DPYVkV~~~~~~~kT~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d 99 (127)
T cd04032 24 RRGLATLTVTVLRATGLWG----DYFTSTDGYVKVFFGGQEKRTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDRD 99 (127)
T ss_pred cCCcEEEEEEEEECCCCCc----CcCCCCCeEEEEEECCccccCceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeCC
Confidence 3567999999999999974 567889999999999999999999999999999999998644 3678999999999
Q ss_pred CCCCCCccCCCCCCCCCeeEEEEEEcccccCC
Q 001696 686 HLGGGEKQNGSSAVRDSRIGKVRIRLSTLEAH 717 (1026)
Q Consensus 686 ~~~~~~~~~~~~~~~~~~lG~~~i~l~~l~~~ 717 (1026)
.++ +|++||++.++|....++
T Consensus 100 ~~s-----------~dd~IG~~~i~l~~~~~~ 120 (127)
T cd04032 100 NGW-----------DDDLLGTCSVVPEAGVHE 120 (127)
T ss_pred CCC-----------CCCeeEEEEEEecCCcee
Confidence 865 799999999999987654
No 133
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=99.60 E-value=1.3e-14 Score=138.71 Aligned_cols=118 Identities=25% Similarity=0.409 Sum_probs=100.3
Q ss_pred EEEEEEEEeEecCCCCCCCCCCcEEEEEECC---eEEEeeeecCCCCCCcccceeEEEeeCCCcCeEEEEEEEccCCCCC
Q 001696 449 YLRVNVIEAQDIVPNDRNRLPEGFVKVQVGN---QVLKTKICPTPTTNPLWNEDLVFVAAEPFEEQLFLTVEDRVHASKD 525 (1026)
Q Consensus 449 ~l~V~I~~a~~L~~~d~~~~~dpyV~v~lg~---~~~kT~~~~~~t~nP~wne~f~f~v~~~~~~~L~i~V~d~d~~~~d 525 (1026)
.++|+|++|++|+..+..+.+||||++.+++ +.++|+++ +++.||.|||.|.|.+.......|.|+|||++..+++
T Consensus 2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~-~~t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~~~~~ 80 (126)
T cd04043 2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTI-YDTLNPRWDEEFELEVPAGEPLWISATVWDRSFVGKH 80 (126)
T ss_pred EEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEe-cCCCCCcccceEEEEcCCCCCCEEEEEEEECCCCCCC
Confidence 5899999999999999889999999999854 46899999 6899999999999999876667899999999988899
Q ss_pred ceeEEEEEeCcccccccCCCCccceeEEcccCCCCchhhhhhccccccceEEEEEEecC
Q 001696 526 EVLGKISLPLHIFEKRLDHRPVHSRWFNLEKFGFGAIEADRRKELKFSSRVHLRVCLEG 584 (1026)
Q Consensus 526 ~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~~~~~~~~~~~~~~~~~~~g~l~l~~~~~~ 584 (1026)
++||++.++|..+... .+......|++|... |++++++.+.+
T Consensus 81 ~~iG~~~i~l~~~~~~-~~~~~~~~w~~l~~~----------------g~i~l~~~~~~ 122 (126)
T cd04043 81 DLCGRASLKLDPKRFG-DDGLPREIWLDLDTQ----------------GRLLLRVSMEG 122 (126)
T ss_pred ceEEEEEEecCHHHcC-CCCCCceEEEEcCCC----------------CeEEEEEEEee
Confidence 9999999999976532 113456789999753 88888888755
No 134
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=99.60 E-value=1.4e-14 Score=138.58 Aligned_cols=118 Identities=24% Similarity=0.437 Sum_probs=98.5
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCe---eeEeeeecCCCCCeEeEEEEEEecCCCCCeEEEEEEeCCCCCCCc
Q 001696 286 YLYVRVVKAKDLPPSSITGSCDPYVEVKMGNY---KGRTKHFEKRMNPEWNQVFAFSKERIQSSMLEVFLKDKEMVGRDD 362 (1026)
Q Consensus 286 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~---~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~v~V~d~~~~~~d~ 362 (1026)
.|+|+|++|++|+..+..+.+||||++.+.+. ..+|++++++.||.|||+|.|.+.......|.|+|||++..++++
T Consensus 2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~~~~~~ 81 (126)
T cd04043 2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEPLWISATVWDRSFVGKHD 81 (126)
T ss_pred EEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCCCCCEEEEEEEECCCCCCCc
Confidence 58999999999999998899999999998753 579999999999999999999987755678999999999988999
Q ss_pred eeEEEEEEccccCCCCCCCCCCCCEEEEeecCCCCCcccceEEEEEEecc
Q 001696 363 YLGRVAFDLNEVPTRVPPDSPLAPQWYRLEDRRGEGKVRGQTMLAIWMGT 412 (1026)
Q Consensus 363 ~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~ 412 (1026)
+||++.++|..+..... +.....|++|.. .|+|++.+.+..
T Consensus 82 ~iG~~~i~l~~~~~~~~--~~~~~~w~~l~~-------~g~i~l~~~~~~ 122 (126)
T cd04043 82 LCGRASLKLDPKRFGDD--GLPREIWLDLDT-------QGRLLLRVSMEG 122 (126)
T ss_pred eEEEEEEecCHHHcCCC--CCCceEEEEcCC-------CCeEEEEEEEee
Confidence 99999999987644320 112348999974 388888887654
No 135
>PLN03008 Phospholipase D delta
Probab=99.60 E-value=5.2e-15 Score=173.22 Aligned_cols=126 Identities=24% Similarity=0.380 Sum_probs=107.8
Q ss_pred eEEEEEEEEecCCCCCccC------------------------------CC---------CCCcCcEEEEEECCE-EEEe
Q 001696 612 GILEVGILGAQGLLPMKMK------------------------------DG---------RGSTDAYCIAKYGQK-WVRT 651 (1026)
Q Consensus 612 g~L~v~v~~a~~L~~~~~~------------------------------~~---------~~~~dpyv~v~~g~~-~~~T 651 (1026)
|.|.++|++|++|++|+.. .+ .+++||||+|.++++ ..||
T Consensus 14 g~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tSDPYV~I~Lg~~rv~RT 93 (868)
T PLN03008 14 GDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIRSHRKVITSDPYVTVVVPQATLART 93 (868)
T ss_pred cccEEEEEEcccCCchhHHHHHHHhhcccccccccccccccccccccccccccccccccccCCCCceEEEEECCcceeeE
Confidence 7889999999988864310 01 357899999999876 5799
Q ss_pred eeecCCCCceeecEEEEEeeCCCCEEEEEEEeCCCCCCCCccCCCCCCCCCeeEEEEEEcccccCCceEeeeEeeeecCC
Q 001696 652 RTILDTFNPKWNEQYTWEVYDPCTVITLGVFDNCHLGGGEKQNGSSAVRDSRIGKVRIRLSTLEAHRIYTHSYPLLVLHP 731 (1026)
Q Consensus 652 ~~~~~t~~P~wne~~~~~v~~~~~~l~i~v~d~~~~~~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~ 731 (1026)
++++++.||+|||.|.|.+.++...|+|.|+|+|.++ +++||.+.|+|.+|..|.....|++|.....
T Consensus 94 rVi~n~~NPvWNE~F~f~vah~~s~L~f~VkD~D~~g------------aD~IG~a~IPL~~L~~Ge~vd~Wl~Ll~~~~ 161 (868)
T PLN03008 94 RVLKNSQEPLWDEKFNISIAHPFAYLEFQVKDDDVFG------------AQIIGTAKIPVRDIASGERISGWFPVLGASG 161 (868)
T ss_pred EeCCCCCCCCcceeEEEEecCCCceEEEEEEcCCccC------------CceeEEEEEEHHHcCCCCceEEEEEccccCC
Confidence 9999999999999999999999889999999999875 5899999999999999999999999997655
Q ss_pred CCCccCcEEEEEEEEeec
Q 001696 732 HGVKKMGELQLAIRFTIF 749 (1026)
Q Consensus 732 ~g~~~~G~i~l~~~f~~~ 749 (1026)
+-.+..|+|+|+++|.|.
T Consensus 162 kp~k~~~kl~v~lqf~pv 179 (868)
T PLN03008 162 KPPKAETAIFIDMKFTPF 179 (868)
T ss_pred CCCCCCcEEEEEEEEEEc
Confidence 444556899999999874
No 136
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=99.60 E-value=7.1e-15 Score=140.85 Aligned_cols=88 Identities=26% Similarity=0.393 Sum_probs=77.6
Q ss_pred EEEEEEEEeEecCCCCCCCCCCcEEEEEE---CCe--EEEeeeecCCCCCCcccceeEEEeeCC--CcCeEEEEEEEccC
Q 001696 449 YLRVNVIEAQDIVPNDRNRLPEGFVKVQV---GNQ--VLKTKICPTPTTNPLWNEDLVFVAAEP--FEEQLFLTVEDRVH 521 (1026)
Q Consensus 449 ~l~V~I~~a~~L~~~d~~~~~dpyV~v~l---g~~--~~kT~~~~~~t~nP~wne~f~f~v~~~--~~~~L~i~V~d~d~ 521 (1026)
.|.|+|++|+||+..+..+.+||||+|++ +.+ +.||+++ +++.||.|||+|.|.+... .+..|.|+|||++.
T Consensus 16 ~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~-k~t~nP~~nE~f~F~v~~~~l~~~~l~~~V~~~d~ 94 (136)
T cd08406 16 RLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVK-RDDTNPIFNEAMIFSVPAIVLQDLSLRVTVAESTE 94 (136)
T ss_pred EEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccc-cCCCCCeeceeEEEECCHHHhCCcEEEEEEEeCCC
Confidence 59999999999999998899999999999 222 5688888 7999999999999998653 56789999999999
Q ss_pred CCCCceeEEEEEeCcc
Q 001696 522 ASKDEVLGKISLPLHI 537 (1026)
Q Consensus 522 ~~~d~~lG~~~i~l~~ 537 (1026)
.+++++||++.|....
T Consensus 95 ~~~~~~iG~v~lg~~~ 110 (136)
T cd08406 95 DGKTPNVGHVIIGPAA 110 (136)
T ss_pred CCCCCeeEEEEECCCC
Confidence 9999999999998764
No 137
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=99.60 E-value=4.8e-15 Score=141.48 Aligned_cols=113 Identities=26% Similarity=0.303 Sum_probs=95.1
Q ss_pred EEEEEEEEecCCCCCccCCCCCCcCcEEEEEECC-EEEEeeeec-CCCCceeecEEEEEeeCC-----CCEEEEEEEeCC
Q 001696 613 ILEVGILGAQGLLPMKMKDGRGSTDAYCIAKYGQ-KWVRTRTIL-DTFNPKWNEQYTWEVYDP-----CTVITLGVFDNC 685 (1026)
Q Consensus 613 ~L~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~g~-~~~~T~~~~-~t~~P~wne~~~~~v~~~-----~~~l~i~v~d~~ 685 (1026)
.|+|.|++|++|+.. +..+.+||||+|.+++ .+.+|+++. ++.||.|||.|.|.+..+ ...|.|+|||++
T Consensus 1 ~L~V~V~sA~~L~~~---~~~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~ 77 (125)
T cd04051 1 TLEITIISAEDLKNV---NLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCER 77 (125)
T ss_pred CEEEEEEEcccCCCC---CcccCCceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECC
Confidence 378999999999987 5678999999999988 889999985 589999999999999877 578999999998
Q ss_pred CCCCCCccCCCCCCCCCeeEEEEEEcccccCCce-----EeeeEeeeecCCCCCccCcEEEE
Q 001696 686 HLGGGEKQNGSSAVRDSRIGKVRIRLSTLEAHRI-----YTHSYPLLVLHPHGVKKMGELQL 742 (1026)
Q Consensus 686 ~~~~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~-----~~~~~~L~~~~~~g~~~~G~i~l 742 (1026)
.++ ++++||.+.|+|.++..+.. ...||+|.... | +.+|.|++
T Consensus 78 ~~~-----------~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~--g-~~~G~~~~ 125 (125)
T cd04051 78 PSL-----------GDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPS--G-KPQGVLNF 125 (125)
T ss_pred CCC-----------CCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCC--C-CcCeEEeC
Confidence 754 78999999999999976543 47899998433 3 34588763
No 138
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=99.60 E-value=6.9e-15 Score=140.14 Aligned_cols=102 Identities=28% Similarity=0.433 Sum_probs=91.8
Q ss_pred eEEEEEEEEecCCCCCccCCCCCCcCcEEEEEECCEEEEeeeecC-CCCceeecEEEEEeeCC----CCEEEEEEEeCCC
Q 001696 612 GILEVGILGAQGLLPMKMKDGRGSTDAYCIAKYGQKWVRTRTILD-TFNPKWNEQYTWEVYDP----CTVITLGVFDNCH 686 (1026)
Q Consensus 612 g~L~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~g~~~~~T~~~~~-t~~P~wne~~~~~v~~~----~~~l~i~v~d~~~ 686 (1026)
|.|+|.|++|+||+.+ +..+.+||||+|.+++...+|+++.+ +.||.|||.|.|.+..+ ...|.|+|||++.
T Consensus 1 g~L~V~V~~A~~L~~~---~~~~~~dpyv~v~~~~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~ 77 (124)
T cd04049 1 GTLEVLLISAKGLQDT---DFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDN 77 (124)
T ss_pred CeEEEEEEecCCCCCC---CCCCCcCceEEEEECCEeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECcc
Confidence 6899999999999987 55689999999999999999999874 89999999999999887 5689999999987
Q ss_pred CCCCCccCCCCCCCCCeeEEEEEEcccccCCceEeeeEeee
Q 001696 687 LGGGEKQNGSSAVRDSRIGKVRIRLSTLEAHRIYTHSYPLL 727 (1026)
Q Consensus 687 ~~~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~ 727 (1026)
++ ++++||++.|+|.++..+.....||+|.
T Consensus 78 ~~-----------~d~~iG~~~i~l~~l~~~~~~~~~~~l~ 107 (124)
T cd04049 78 FS-----------DDDFIGEATIHLKGLFEEGVEPGTAELV 107 (124)
T ss_pred CC-----------CCCeEEEEEEEhHHhhhCCCCcCceEee
Confidence 64 7899999999999997777778999997
No 139
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=99.59 E-value=1.1e-14 Score=139.33 Aligned_cols=89 Identities=27% Similarity=0.293 Sum_probs=76.8
Q ss_pred EEEEEEEEEeEecCCCCC--CCCCCcEEEEEECC-----eEEEeeeecCCCCCCcccceeEEEeeCC--CcCeEEEEEEE
Q 001696 448 WYLRVNVIEAQDIVPNDR--NRLPEGFVKVQVGN-----QVLKTKICPTPTTNPLWNEDLVFVAAEP--FEEQLFLTVED 518 (1026)
Q Consensus 448 ~~l~V~I~~a~~L~~~d~--~~~~dpyV~v~lg~-----~~~kT~~~~~~t~nP~wne~f~f~v~~~--~~~~L~i~V~d 518 (1026)
+.|.|.|++|+||..++. .+.+||||+|++.. .+.||+++ +++.||+|||.|.|.+... .+..|.|+|||
T Consensus 15 ~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~-k~t~nPvfNE~f~F~v~~~~L~~~~L~~~V~d 93 (138)
T cd08407 15 NRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRA-KHKINPVWNEMIMFELPSELLAASSVELEVLN 93 (138)
T ss_pred CeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceecccee-eCCCCCccccEEEEECCHHHhCccEEEEEEEe
Confidence 369999999999999883 34589999999933 25689998 7999999999999998654 45689999999
Q ss_pred ccCCCCCceeEEEEEeCcc
Q 001696 519 RVHASKDEVLGKISLPLHI 537 (1026)
Q Consensus 519 ~d~~~~d~~lG~~~i~l~~ 537 (1026)
++.++++++||++.+++..
T Consensus 94 ~d~~~~~d~iG~v~lg~~~ 112 (138)
T cd08407 94 QDSPGQSLPLGRCSLGLHT 112 (138)
T ss_pred CCCCcCcceeceEEecCcC
Confidence 9999999999999999864
No 140
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=99.59 E-value=8e-15 Score=140.53 Aligned_cols=120 Identities=18% Similarity=0.273 Sum_probs=97.2
Q ss_pred ceEEEEeecCCCccCCCCCCCCCEEEEEeCCce-eeeccCCCCCCcccceeEEEeccCCCCCccceEEEEEeeCCCCCC-
Q 001696 2 KLVVEVVDAYDLMPKDGEGSASPFAEVDFLNQL-SKTKTIPKNLNPVWNQKLLFDFDQTKSHNHLRIEVSIYHHERRPI- 79 (1026)
Q Consensus 2 ~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~-~~T~~~~~t~nP~Wne~f~f~~~~~~~~~~~~L~~~V~d~d~~~~- 79 (1026)
.|.|.|++|++|++++ +|||.|.+++.. .||+++.++.||.|+|+|.|...+.- ..|.|.||+.++...
T Consensus 12 sL~v~V~EAk~Lp~~~-----~~Y~~i~Ld~~~vaRT~v~~~~~nP~W~E~F~f~~~~~~----~~l~v~v~k~~~~~~~ 82 (146)
T cd04013 12 SLKLWIIEAKGLPPKK-----RYYCELCLDKTLYARTTSKLKTDTLFWGEHFEFSNLPPV----SVITVNLYRESDKKKK 82 (146)
T ss_pred EEEEEEEEccCCCCcC-----CceEEEEECCEEEEEEEEEcCCCCCcceeeEEecCCCcc----cEEEEEEEEccCcccc
Confidence 4889999999998764 799999999977 59999999999999999999866543 579999987332221
Q ss_pred -CCCccceeEEecCccccccCCceeEEeecccccccc--------ccccccceeEEecCCC
Q 001696 80 -PGRHFLGRVRIPCSNLVRKGEEVYQRFPLEKKWFLS--------SVKGEVGLKIYISPQS 131 (1026)
Q Consensus 80 -~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~~--------~~~G~l~l~~~~~~~~ 131 (1026)
.++++||++.||++++... .....||+|.+..... ...+.|++++.|.+..
T Consensus 83 ~~~~~~IG~V~Ip~~~l~~~-~~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~~~ 142 (146)
T cd04013 83 KDKSQLIGTVNIPVTDVSSR-QFVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQSTR 142 (146)
T ss_pred ccCCcEEEEEEEEHHHhcCC-CcccEEEEeecCCCCCccccccccCCCCEEEEEEEEEEee
Confidence 2678999999999999854 4589999998865443 4457999999987653
No 141
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=99.59 E-value=1.2e-14 Score=136.51 Aligned_cols=100 Identities=20% Similarity=0.356 Sum_probs=85.5
Q ss_pred eeEeeeccccceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeEeeeecCCC-CCeEeEEEEEEecCC-CC
Q 001696 273 RFTSTYDLVEQMSYLYVRVVKAKDLPPSSITGSCDPYVEVKMGN-----YKGRTKHFEKRM-NPEWNQVFAFSKERI-QS 345 (1026)
Q Consensus 273 ~~~~~y~~~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~-----~~~kT~~~~~t~-nP~wne~f~f~v~~~-~~ 345 (1026)
.++++|.. ..+.|+|+|++|+||+++...+.+||||+|++-. .++||+++++|. ||+|||+|.|.+... .+
T Consensus 4 ~~sL~Y~p--~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~~ 81 (135)
T cd08692 4 QLGTCFQA--VNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQEHG 81 (135)
T ss_pred EEEeeecC--cCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCchhhe
Confidence 67889976 6799999999999999886666789999999853 368999999995 699999999998543 24
Q ss_pred CeEEEEEEeCCCCCCCceeEEEEEEcccc
Q 001696 346 SMLEVFLKDKEMVGRDDYLGRVAFDLNEV 374 (1026)
Q Consensus 346 ~~L~v~V~d~~~~~~d~~lG~~~i~l~~l 374 (1026)
-.|.|+|||++..+++++||++.+.....
T Consensus 82 v~l~v~v~d~~~~~~n~~IG~v~lG~~~~ 110 (135)
T cd08692 82 IQFLIKLYSRSSVRRKHFLGQVWISSDSS 110 (135)
T ss_pred eEEEEEEEeCCCCcCCceEEEEEECCccC
Confidence 58899999999999999999999998764
No 142
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.58 E-value=1e-14 Score=137.34 Aligned_cols=102 Identities=32% Similarity=0.416 Sum_probs=91.4
Q ss_pred eEEEEEEEEecCCCCCccCCCCCCcCcEEEEEECC-EEEEeeeecCCCCceeecEEEEEeeCCCCEEEEEEEeCCCCCCC
Q 001696 612 GILEVGILGAQGLLPMKMKDGRGSTDAYCIAKYGQ-KWVRTRTILDTFNPKWNEQYTWEVYDPCTVITLGVFDNCHLGGG 690 (1026)
Q Consensus 612 g~L~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~g~-~~~~T~~~~~t~~P~wne~~~~~v~~~~~~l~i~v~d~~~~~~~ 690 (1026)
|.|+|.|++|++|+.. +..+.+||||+|.+++ ...+|++++++.||.|||.|.|.+..+...|.|+|||++.++
T Consensus 1 g~L~V~Vi~a~~L~~~---d~~g~~DPYv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~~~~~L~v~v~d~~~~~-- 75 (120)
T cd04045 1 GVLRLHIRKANDLKNL---EGVGKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVTSPNQKITLEVMDYEKVG-- 75 (120)
T ss_pred CeEEEEEEeeECCCCc---cCCCCcCCEEEEEECCEEeeceeEECCCcCCccCceEEEEecCCCCEEEEEEEECCCCC--
Confidence 6899999999999987 5678999999999976 569999999999999999999999888889999999999865
Q ss_pred CccCCCCCCCCCeeEEEEEEcccccCCceEeeeEeeee
Q 001696 691 EKQNGSSAVRDSRIGKVRIRLSTLEAHRIYTHSYPLLV 728 (1026)
Q Consensus 691 ~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~ 728 (1026)
+|++||.+.++|.++..+ ....||-|..
T Consensus 76 ---------~d~~IG~~~~~l~~l~~~-~~~~~~~~~~ 103 (120)
T cd04045 76 ---------KDRSLGSVEINVSDLIKK-NEDGKYVEYD 103 (120)
T ss_pred ---------CCCeeeEEEEeHHHhhCC-CCCceEEecC
Confidence 789999999999999776 4488998874
No 143
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=99.58 E-value=5.2e-15 Score=142.89 Aligned_cols=114 Identities=23% Similarity=0.409 Sum_probs=95.5
Q ss_pred eeEeeeccccceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeEeeeecCCCCCeEeEEEEEEecCC--CC
Q 001696 273 RFTSTYDLVEQMSYLYVRVVKAKDLPPSSITGSCDPYVEVKMGN-----YKGRTKHFEKRMNPEWNQVFAFSKERI--QS 345 (1026)
Q Consensus 273 ~~~~~y~~~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~-----~~~kT~~~~~t~nP~wne~f~f~v~~~--~~ 345 (1026)
++++.|+. ..+.|.|+|++|+||++.+..|.+||||+|.+.+ .+.+|++++++.||+|||+|.|.+... ..
T Consensus 3 ~~~l~y~~--~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~ 80 (133)
T cd08384 3 LVSLMYNT--QRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAK 80 (133)
T ss_pred EEEEEEcC--CCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhCC
Confidence 57888877 5699999999999999999889999999999963 367999999999999999999998543 35
Q ss_pred CeEEEEEEeCCCCCCCceeEEEEEEccccCCCCCCCCCCCCEEEEeecCC
Q 001696 346 SMLEVFLKDKEMVGRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLEDRR 395 (1026)
Q Consensus 346 ~~L~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~ 395 (1026)
..|.|+|||++..+++++||++.+++..... . ...|+++....
T Consensus 81 ~~l~~~V~d~d~~~~~~~lG~~~i~l~~~~~--~-----~~~W~~~l~~~ 123 (133)
T cd08384 81 KTLEITVWDKDIGKSNDYIGGLQLGINAKGE--R-----LRHWLDCLKNP 123 (133)
T ss_pred CEEEEEEEeCCCCCCccEEEEEEEecCCCCc--h-----HHHHHHHHhCC
Confidence 6899999999998899999999999975221 1 23788776543
No 144
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=99.58 E-value=1.8e-14 Score=139.60 Aligned_cols=123 Identities=16% Similarity=0.293 Sum_probs=96.9
Q ss_pred eEEEEeecCC--CccCCCCCCCCCEEEEEe-----CCceeeeccCCCCCCcccceeEEEeccCCC-----CCccceEEEE
Q 001696 3 LVVEVVDAYD--LMPKDGEGSASPFAEVDF-----LNQLSKTKTIPKNLNPVWNQKLLFDFDQTK-----SHNHLRIEVS 70 (1026)
Q Consensus 3 L~V~v~~a~~--L~~~~~~g~~dpyv~v~~-----~~~~~~T~~~~~t~nP~Wne~f~f~~~~~~-----~~~~~~L~~~ 70 (1026)
..++|..|++ |+..+.++.+||||++++ ..++.+|+++++|+||+|||+|.|.+.... ......|.|+
T Consensus 4 ~el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~ 83 (155)
T cd08690 4 IELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFE 83 (155)
T ss_pred eEEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEE
Confidence 4577777777 667777889999999997 237899999999999999999999986542 2334679999
Q ss_pred EeeCCCCCCCCCccceeEEecCccccccCCceeEEeeccccccccccccccceeEEecC
Q 001696 71 IYHHERRPIPGRHFLGRVRIPCSNLVRKGEEVYQRFPLEKKWFLSSVKGEVGLKIYISP 129 (1026)
Q Consensus 71 V~d~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~ 129 (1026)
|||.+. +...|++||++.++|+.+..... ...|++|... +..+-|+|++++..-.
T Consensus 84 V~d~~~-f~~~D~~iG~~~i~L~~l~~~~~-~~~~~~L~~~--~k~~Gg~l~v~ir~r~ 138 (155)
T cd08690 84 VYHKGG-FLRSDKLLGTAQVKLEPLETKCE-IHESVDLMDG--RKATGGKLEVKVRLRE 138 (155)
T ss_pred EEeCCC-cccCCCeeEEEEEEcccccccCc-ceEEEEhhhC--CCCcCCEEEEEEEecC
Confidence 999443 23479999999999999876654 5669998742 3356799999988654
No 145
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=99.58 E-value=3.6e-14 Score=135.75 Aligned_cols=118 Identities=25% Similarity=0.390 Sum_probs=98.1
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECC-------------eeeEeeeecCCCCCeE-eEEEEEEecCCCCCeEEEE
Q 001696 286 YLYVRVVKAKDLPPSSITGSCDPYVEVKMGN-------------YKGRTKHFEKRMNPEW-NQVFAFSKERIQSSMLEVF 351 (1026)
Q Consensus 286 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~-------------~~~kT~~~~~t~nP~w-ne~f~f~v~~~~~~~L~v~ 351 (1026)
.+.|++++|+||+ ++..|.+||||++.+.+ ++++|+++++++||+| ||+|.|.+.. +..|.|+
T Consensus 2 ~~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~~--~~~L~v~ 78 (137)
T cd08691 2 SFSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGLP--TDVLEIE 78 (137)
T ss_pred EEEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcCC--CCEEEEE
Confidence 4679999999998 67789999999999953 3689999999999999 9999999853 4689999
Q ss_pred EEeCCCCCC---CceeEEEEEEccccCCCCCCCCCCCCEEEEeecCCCCCcccceEEEEE
Q 001696 352 LKDKEMVGR---DDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLEDRRGEGKVRGQTMLAI 408 (1026)
Q Consensus 352 V~d~~~~~~---d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~ 408 (1026)
|||++..++ +++||++.+++.++....... ....||+|......+.+.|+|.+.+
T Consensus 79 V~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~~~--~~~~~~~l~k~~~~s~v~G~~~l~~ 136 (137)
T cd08691 79 VKDKFAKSRPIIRRFLGKLSIPVQRLLERHAIG--DQELSYTLGRRTPTDHVSGQLTFRF 136 (137)
T ss_pred EEecCCCCCccCCceEEEEEEEHHHhcccccCC--ceEEEEECCcCCCCCcEEEEEEEEe
Confidence 999865433 799999999999997664322 2458999998877778899998765
No 146
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.58 E-value=6.7e-16 Score=159.12 Aligned_cols=226 Identities=20% Similarity=0.279 Sum_probs=177.0
Q ss_pred eeEeeeccccceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeEeeeecCCCCCeEeEEEEEEe---cCCC
Q 001696 273 RFTSTYDLVEQMSYLYVRVVKAKDLPPSSITGSCDPYVEVKMGN-----YKGRTKHFEKRMNPEWNQVFAFSK---ERIQ 344 (1026)
Q Consensus 273 ~~~~~y~~~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~-----~~~kT~~~~~t~nP~wne~f~f~v---~~~~ 344 (1026)
.|.+.|+. ....+..+|.+|++|++++.++..|||++..+.. .+.+|++..+++||.|+|+..... ++..
T Consensus 83 ~~~~~y~~--~~~~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~n~lN~~w~etev~~~i~~~~~~ 160 (362)
T KOG1013|consen 83 EFELLYDS--ESRMLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTRNTLNPEWNETEVYEGITDDDTH 160 (362)
T ss_pred hhhhhhhh--hhhhcceeechhcccchhhhhhhcchHHhhhcccchhhhhhhhHHhhccCcCcceeccceecccccchhh
Confidence 67777876 4578899999999999999999999999999976 257888999999999999876652 2234
Q ss_pred CCeEEEEEEeCCCCCCCceeEEEEEEccccCCCCCCCCCCCCEEEEeecCCCC-----CcccceEEEEEEecccCchhhh
Q 001696 345 SSMLEVFLKDKEMVGRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLEDRRGE-----GKVRGQTMLAIWMGTQADEAFA 419 (1026)
Q Consensus 345 ~~~L~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~-----~~~~G~i~l~~~~~~~~d~~~~ 419 (1026)
...+++.|.|.+.+..++++|+..+++..+.....+. ...|+.-..+... -+.+|.|.+++.|....
T Consensus 161 ~K~~Rk~vcdn~~~~~~~sqGq~r~~lkKl~p~q~k~---f~~cl~~~lp~~rad~~~~E~rg~i~isl~~~s~~----- 232 (362)
T KOG1013|consen 161 LKVLRKVVCDNDKKTHNESQGQSRVSLKKLKPLQRKS---FNICLEKSLPSERADRDEDEERGAILISLAYSSTT----- 232 (362)
T ss_pred hhhhheeeccCcccccccCcccchhhhhccChhhcch---hhhhhhccCCcccccccchhhccceeeeeccCcCC-----
Confidence 5678899999999999999999999998886654321 2244443333111 13567777777654332
Q ss_pred hcccccCccccCCCccccccccccCCceEEEEEEEEEeEecCCCCCCCCCCcEEEEEEC---C--eEEEeeeecCCCCCC
Q 001696 420 EAWHSDASSVYGEGVFNIRSKVYVSPKLWYLRVNVIEAQDIVPNDRNRLPEGFVKVQVG---N--QVLKTKICPTPTTNP 494 (1026)
Q Consensus 420 ~~~~~d~~~~~~~~~~~~r~~~~~~p~~~~l~V~I~~a~~L~~~d~~~~~dpyV~v~lg---~--~~~kT~~~~~~t~nP 494 (1026)
..+.|+++.|..|..+|.++.+||||+.++. + -+++|.+. +++.+|
T Consensus 233 ----------------------------~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~-K~t~~p 283 (362)
T KOG1013|consen 233 ----------------------------PGLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQK-KKTLNP 283 (362)
T ss_pred ----------------------------CceEEEEEEeeeeeccccCCCCCccceeecCCCcchhhcccCcch-hccCCc
Confidence 2489999999999999999999999999982 2 35678887 799999
Q ss_pred cccceeEEEeeCC--CcCeEEEEEEEccCCCCCceeEEEEEeCcc
Q 001696 495 LWNEDLVFVAAEP--FEEQLFLTVEDRVHASKDEVLGKISLPLHI 537 (1026)
Q Consensus 495 ~wne~f~f~v~~~--~~~~L~i~V~d~d~~~~d~~lG~~~i~l~~ 537 (1026)
.||+.|.|.+... ....+.|.|+|++....++++|-+...+..
T Consensus 284 ~fd~~~~~~i~pgdLa~~kv~lsvgd~~~G~s~d~~GG~~~g~~r 328 (362)
T KOG1013|consen 284 EFDEEFFYDIGPGDLAYKKVALSVGDYDIGKSNDSIGGSMLGGYR 328 (362)
T ss_pred cccccccccCCccchhcceEEEeecccCCCcCccCCCcccccccc
Confidence 9999999987543 566899999999988889999988766543
No 147
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.58 E-value=1.9e-14 Score=135.15 Aligned_cols=111 Identities=31% Similarity=0.448 Sum_probs=94.9
Q ss_pred EEEEEEEecCCCCCccCCCCCCcCcEEEEEECC-EEEEeeeecCCCCceeecEEEEEeeC-CCCEEEEEEEeCCCCCCCC
Q 001696 614 LEVGILGAQGLLPMKMKDGRGSTDAYCIAKYGQ-KWVRTRTILDTFNPKWNEQYTWEVYD-PCTVITLGVFDNCHLGGGE 691 (1026)
Q Consensus 614 L~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~g~-~~~~T~~~~~t~~P~wne~~~~~v~~-~~~~l~i~v~d~~~~~~~~ 691 (1026)
|+|.|++|++|+.. +..+.+||||+|.+++ ..++|+++.++.||.|||.|.|.+.. ....|.|+|||++..+
T Consensus 1 l~v~vi~a~~L~~~---~~~~~~dpyv~v~~~~~~~~~T~v~~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~~~--- 74 (115)
T cd04040 1 LTVDVISAENLPSA---DRNGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWDRGG--- 74 (115)
T ss_pred CEEEEEeeeCCCCC---CCCCCCCCeEEEEECCCcceeeceecCCCCCcccccEEEEeccCCCCEEEEEEEeCCCCC---
Confidence 57999999999987 5577899999999965 55899999999999999999999987 4678999999998754
Q ss_pred ccCCCCCCCCCeeEEEEEEcccccCCceEeeeEeeeecCCCCCccCcEEE
Q 001696 692 KQNGSSAVRDSRIGKVRIRLSTLEAHRIYTHSYPLLVLHPHGVKKMGELQ 741 (1026)
Q Consensus 692 ~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~ 741 (1026)
++++||++.+++.++..+.....|++|.. .|..+.|.+.
T Consensus 75 --------~~~~iG~~~~~l~~l~~~~~~~~~~~L~~---~g~~~~~~~~ 113 (115)
T cd04040 75 --------KDDLLGSAYIDLSDLEPEETTELTLPLDG---QGGGKLGAVF 113 (115)
T ss_pred --------CCCceEEEEEEHHHcCCCCcEEEEEECcC---CCCccCceEE
Confidence 78999999999999999888899999973 3334457664
No 148
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=99.57 E-value=2.5e-14 Score=134.92 Aligned_cols=112 Identities=29% Similarity=0.486 Sum_probs=88.3
Q ss_pred EEEEEEEecCCCCCccCCCCCCcCcEEEEEECCE-EEEeeeecCCCCceeecEEEEEeeCC---CCEEEEEEEeCCCCCC
Q 001696 614 LEVGILGAQGLLPMKMKDGRGSTDAYCIAKYGQK-WVRTRTILDTFNPKWNEQYTWEVYDP---CTVITLGVFDNCHLGG 689 (1026)
Q Consensus 614 L~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~g~~-~~~T~~~~~t~~P~wne~~~~~v~~~---~~~l~i~v~d~~~~~~ 689 (1026)
|+|.|++|+||+.. |.+||||+++++++ +++|+++++ .||.|||+|.|.+... ...|.|.+||.+..+
T Consensus 2 L~v~vi~a~~l~~~------~~~dpyv~v~~~~~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~- 73 (117)
T cd08383 2 LRLRILEAKNLPSK------GTRDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKD- 73 (117)
T ss_pred eEEEEEEecCCCcC------CCCCceEEEEECCEEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCC-
Confidence 78999999999863 68999999999875 589999999 9999999999999873 346888888876532
Q ss_pred CCccCCCCCCCCCeeEEEEEEcccccCCceEeeeEeeeecCCCCCccCcEEEEEEEE
Q 001696 690 GEKQNGSSAVRDSRIGKVRIRLSTLEAHRIYTHSYPLLVLHPHGVKKMGELQLAIRF 746 (1026)
Q Consensus 690 ~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f 746 (1026)
++..+|++.|. .+..+.....||+|...+.. .+..|+|+|+++|
T Consensus 74 ----------~~~~~g~v~l~--~~~~~~~~~~w~~L~~~~~~-~~~~G~l~l~~~~ 117 (117)
T cd08383 74 ----------RDIVIGKVALS--KLDLGQGKDEWFPLTPVDPD-SEVQGSVRLRARY 117 (117)
T ss_pred ----------CeeEEEEEEec--CcCCCCcceeEEECccCCCC-CCcCceEEEEEEC
Confidence 56677776555 44446667999999865542 3447999999976
No 149
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.57 E-value=1.5e-14 Score=139.42 Aligned_cols=114 Identities=19% Similarity=0.361 Sum_probs=95.2
Q ss_pred eeEeeeccccceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC------eeeEeeeecCCCCCeEeEEEEEEec--CCC
Q 001696 273 RFTSTYDLVEQMSYLYVRVVKAKDLPPSSITGSCDPYVEVKMGN------YKGRTKHFEKRMNPEWNQVFAFSKE--RIQ 344 (1026)
Q Consensus 273 ~~~~~y~~~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~------~~~kT~~~~~t~nP~wne~f~f~v~--~~~ 344 (1026)
.+++.|+. ..+.|.|+|++|+||+.++..|.+||||++.+.+ .++||++++++.||+|||+|.|.+. ++.
T Consensus 5 ~~sL~Y~~--~~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l~ 82 (138)
T cd08408 5 LLGLEYNA--LTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALFQLS 82 (138)
T ss_pred EEEeEEcC--CCCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHHHhC
Confidence 78889987 5699999999999999999889999999999953 2569999999999999999999985 345
Q ss_pred CCeEEEEEEeCCCCCCCceeEEEEEEccccCCCCCCCCCCCCEEEEeecC
Q 001696 345 SSMLEVFLKDKEMVGRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLEDR 394 (1026)
Q Consensus 345 ~~~L~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~ 394 (1026)
+..|.|+|||.+.++++++||++.+++....... ..+|+.+...
T Consensus 83 ~~~L~~~V~~~~~~~~~~~iG~v~l~~~~~~~~~------~~hW~~~l~~ 126 (138)
T cd08408 83 EVTLMFSVYNKRKMKRKEMIGWFSLGLNSSGEEE------EEHWNEMKES 126 (138)
T ss_pred ccEEEEEEEECCCCCCCcEEEEEEECCcCCCchH------HHHHHHHHhC
Confidence 6799999999999999999999999887543211 1267776553
No 150
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=99.57 E-value=2e-14 Score=138.41 Aligned_cols=104 Identities=25% Similarity=0.448 Sum_probs=91.5
Q ss_pred eeEeeeccccceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-------eeeEeeeecCCCCCeEeEEEEEEecCC--
Q 001696 273 RFTSTYDLVEQMSYLYVRVVKAKDLPPSSITGSCDPYVEVKMGN-------YKGRTKHFEKRMNPEWNQVFAFSKERI-- 343 (1026)
Q Consensus 273 ~~~~~y~~~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~-------~~~kT~~~~~t~nP~wne~f~f~v~~~-- 343 (1026)
.+++.|+. ..+.|.|+|++|++|+..+..|.+||||+|.+.+ .+++|+++++|.||+|||+|.|.+...
T Consensus 6 ~~~l~y~~--~~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~ 83 (133)
T cd04009 6 TVKAYYRA--SEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQC 83 (133)
T ss_pred EEEEEEcC--CCCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechhhc
Confidence 67788866 5689999999999999998889999999999963 468999999999999999999998542
Q ss_pred --CCCeEEEEEEeCCCCCCCceeEEEEEEccccCCCC
Q 001696 344 --QSSMLEVFLKDKEMVGRDDYLGRVAFDLNEVPTRV 378 (1026)
Q Consensus 344 --~~~~L~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~ 378 (1026)
....|.|+|||++.++++++||++.++|.++..-.
T Consensus 84 ~~~~~~l~~~V~d~d~~~~d~~iG~~~i~l~~l~~~~ 120 (133)
T cd04009 84 SVEGALLLFTVKDYDLLGSNDFEGEAFLPLNDIPGVE 120 (133)
T ss_pred ccCCCEEEEEEEecCCCCCCcEeEEEEEeHHHCCccc
Confidence 35689999999999988999999999999998544
No 151
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.57 E-value=2.2e-14 Score=138.92 Aligned_cols=102 Identities=27% Similarity=0.518 Sum_probs=89.0
Q ss_pred cc-eeEeeeccccceeEEEEEEEEeecCCCCCCCCCCCcEEEEEEC--C---eeeEeeeecCCCCCeEeEEEEEEec--C
Q 001696 271 GE-RFTSTYDLVEQMSYLYVRVVKAKDLPPSSITGSCDPYVEVKMG--N---YKGRTKHFEKRMNPEWNQVFAFSKE--R 342 (1026)
Q Consensus 271 g~-~~~~~y~~~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~--~---~~~kT~~~~~t~nP~wne~f~f~v~--~ 342 (1026)
|+ .+++.|+. ..+.|.|+|++|+||+..+..|.+||||+|.+. + .+.+|++++++.||.|||+|.|.+. .
T Consensus 2 G~l~~sl~y~~--~~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~~ 79 (136)
T cd08405 2 GELLLSLCYNP--TANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLER 79 (136)
T ss_pred cEEEEEEEEcC--CCCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHHH
Confidence 44 78899987 458999999999999998888999999999983 2 2578999999999999999999874 3
Q ss_pred CCCCeEEEEEEeCCCCCCCceeEEEEEEcccc
Q 001696 343 IQSSMLEVFLKDKEMVGRDDYLGRVAFDLNEV 374 (1026)
Q Consensus 343 ~~~~~L~v~V~d~~~~~~d~~lG~~~i~l~~l 374 (1026)
.....|.|+|||++.++++++||++.+++.+.
T Consensus 80 ~~~~~l~~~v~d~~~~~~~~~lG~~~i~~~~~ 111 (136)
T cd08405 80 LRETTLIITVMDKDRLSRNDLIGKIYLGWKSG 111 (136)
T ss_pred hCCCEEEEEEEECCCCCCCcEeEEEEECCccC
Confidence 33568999999999999999999999999875
No 152
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=99.57 E-value=6e-15 Score=142.28 Aligned_cols=115 Identities=17% Similarity=0.395 Sum_probs=93.4
Q ss_pred eeEeeeccccceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeEeeeecCCCCCeEeEEEEEEecC--CCC
Q 001696 273 RFTSTYDLVEQMSYLYVRVVKAKDLPPSSITGSCDPYVEVKMGN-----YKGRTKHFEKRMNPEWNQVFAFSKER--IQS 345 (1026)
Q Consensus 273 ~~~~~y~~~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~-----~~~kT~~~~~t~nP~wne~f~f~v~~--~~~ 345 (1026)
.+++.|.. ..+.|.|+|++|++|+..+..|.+||||+|.+.+ .+++|++++++.||.|||+|.|.+.. ...
T Consensus 4 ~~~l~y~~--~~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~~ 81 (135)
T cd08410 4 LLSLNYLP--SAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEELEN 81 (135)
T ss_pred EEEEEECC--CCCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHHHhCC
Confidence 78899976 5589999999999999999889999999999832 35789999999999999999999843 334
Q ss_pred CeEEEEEEeCCCCCCCceeEEEEEEccccCCCCCCCCCCCCEEEEeecCC
Q 001696 346 SMLEVFLKDKEMVGRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLEDRR 395 (1026)
Q Consensus 346 ~~L~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~ 395 (1026)
..|.|+|||++..+++++||++.|........ ....|+.|....
T Consensus 82 ~~l~~~V~d~d~~~~~~~iG~~~l~~~~~~~~------~~~~W~~l~~~~ 125 (135)
T cd08410 82 VSLVFTVYGHNVKSSNDFIGRIVIGQYSSGPS------ETNHWRRMLNSQ 125 (135)
T ss_pred CEEEEEEEeCCCCCCCcEEEEEEEcCccCCch------HHHHHHHHHhCC
Confidence 57999999999999999999998765433321 123687777653
No 153
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=99.57 E-value=5.5e-15 Score=143.08 Aligned_cols=114 Identities=24% Similarity=0.428 Sum_probs=95.4
Q ss_pred eeEeeeccccceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeEeeeecCCCCCeEeEEEEEEecC--CCC
Q 001696 273 RFTSTYDLVEQMSYLYVRVVKAKDLPPSSITGSCDPYVEVKMGN-----YKGRTKHFEKRMNPEWNQVFAFSKER--IQS 345 (1026)
Q Consensus 273 ~~~~~y~~~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~-----~~~kT~~~~~t~nP~wne~f~f~v~~--~~~ 345 (1026)
.+++.|+. ..+.|.|+|++|++|+..+..|.+||||+|.+.+ .+.+|++++++.||.|||+|.|.+.. ...
T Consensus 5 ~~~l~y~~--~~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~~~ 82 (136)
T cd08404 5 LLSLCYQP--TTNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEELED 82 (136)
T ss_pred EEEEEEeC--CCCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHHHhCC
Confidence 78888876 4589999999999999999899999999999853 25789999999999999999999753 235
Q ss_pred CeEEEEEEeCCCCCCCceeEEEEEEccccCCCCCCCCCCCCEEEEeecCC
Q 001696 346 SMLEVFLKDKEMVGRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLEDRR 395 (1026)
Q Consensus 346 ~~L~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~ 395 (1026)
..|.|+|||++.++++++||++.+++... ... ...|+.|....
T Consensus 83 ~~l~~~v~d~d~~~~~~~iG~~~~~~~~~--~~~-----~~~w~~l~~~~ 125 (136)
T cd08404 83 ISVEFLVLDSDRVTKNEVIGRLVLGPKAS--GSG-----GHHWKEVCNPP 125 (136)
T ss_pred CEEEEEEEECCCCCCCccEEEEEECCcCC--Cch-----HHHHHHHHhCC
Confidence 67999999999999999999999999872 221 23788887654
No 154
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=99.57 E-value=2.3e-14 Score=138.83 Aligned_cols=115 Identities=27% Similarity=0.456 Sum_probs=95.2
Q ss_pred cc-eeEeeeccccceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeEeeeecCCCCCeEeEEEEEEecC--
Q 001696 271 GE-RFTSTYDLVEQMSYLYVRVVKAKDLPPSSITGSCDPYVEVKMGN-----YKGRTKHFEKRMNPEWNQVFAFSKER-- 342 (1026)
Q Consensus 271 g~-~~~~~y~~~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~-----~~~kT~~~~~t~nP~wne~f~f~v~~-- 342 (1026)
|+ .+++.|.. ..+.|.|+|++|++|+.++..|.+||||+|.+.+ .+++|++++++.||.|||+|.|.+..
T Consensus 2 G~l~~~l~y~~--~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~ 79 (136)
T cd08402 2 GDICFSLRYVP--TAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQ 79 (136)
T ss_pred cEEEEEeEEcC--CCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHHH
Confidence 45 78899987 5689999999999999999899999999999952 35789999999999999999999753
Q ss_pred CCCCeEEEEEEeCCCCCCCceeEEEEEEccccCCCCCCCCCCCCEEEEeecC
Q 001696 343 IQSSMLEVFLKDKEMVGRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLEDR 394 (1026)
Q Consensus 343 ~~~~~L~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~ 394 (1026)
.....|.|+|||++.++++++||++.+++..... . ...|+++...
T Consensus 80 l~~~~l~~~v~d~~~~~~~~~iG~~~i~~~~~~~--~-----~~~W~~~~~~ 124 (136)
T cd08402 80 IQKVHLIVTVLDYDRIGKNDPIGKVVLGCNATGA--E-----LRHWSDMLAS 124 (136)
T ss_pred hCCCEEEEEEEeCCCCCCCceeEEEEECCccCCh--H-----HHHHHHHHhC
Confidence 2345899999999999999999999999976422 1 2267776654
No 155
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=99.57 E-value=1.9e-14 Score=135.78 Aligned_cols=115 Identities=25% Similarity=0.408 Sum_probs=89.4
Q ss_pred eEEEEeecCCCccCCCCCCCCCEEEEEeCCc-eeeeccCCCCCCcccceeEEEeccCCCCCccceEEEEEeeCCCCCCCC
Q 001696 3 LVVEVVDAYDLMPKDGEGSASPFAEVDFLNQ-LSKTKTIPKNLNPVWNQKLLFDFDQTKSHNHLRIEVSIYHHERRPIPG 81 (1026)
Q Consensus 3 L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~-~~~T~~~~~t~nP~Wne~f~f~~~~~~~~~~~~L~~~V~d~d~~~~~~ 81 (1026)
|.|+|++|+||+.. |.+||||+|+++++ .++|+++.+ .||+|||+|.|.+...+ .....|.|.+||.+. ...
T Consensus 2 L~v~vi~a~~l~~~---~~~dpyv~v~~~~~~~~kT~~~~~-~~P~Wne~f~f~v~~~~-~~~~~l~i~v~d~~~--~~~ 74 (117)
T cd08383 2 LRLRILEAKNLPSK---GTRDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFDDPPPD-VTFFTLSFYNKDKRS--KDR 74 (117)
T ss_pred eEEEEEEecCCCcC---CCCCceEEEEECCEEeEecceEEC-CCCcccceEEEecCCcc-ccEEEEEEEEEeccc--CCC
Confidence 78999999999865 78999999999874 579999988 99999999999987643 223578888888332 235
Q ss_pred CccceeEEecCccccccCCceeEEeeccccccccccccccceeEEe
Q 001696 82 RHFLGRVRIPCSNLVRKGEEVYQRFPLEKKWFLSSVKGEVGLKIYI 127 (1026)
Q Consensus 82 d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 127 (1026)
+.++|++.|. .+.. +.....||+|+++.......|+|++++.|
T Consensus 75 ~~~~g~v~l~--~~~~-~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 117 (117)
T cd08383 75 DIVIGKVALS--KLDL-GQGKDEWFPLTPVDPDSEVQGSVRLRARY 117 (117)
T ss_pred eeEEEEEEec--CcCC-CCcceeEEECccCCCCCCcCceEEEEEEC
Confidence 5667765554 4433 33478999999877667789999999875
No 156
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=99.57 E-value=2.4e-14 Score=137.83 Aligned_cols=102 Identities=29% Similarity=0.430 Sum_probs=89.2
Q ss_pred eEEEEEEEEecCCCCCccCCCCCCcCcEEEEEEC-----CEEEEeeeecCCCCceeecEEEEEeeCC--CCEEEEEEEeC
Q 001696 612 GILEVGILGAQGLLPMKMKDGRGSTDAYCIAKYG-----QKWVRTRTILDTFNPKWNEQYTWEVYDP--CTVITLGVFDN 684 (1026)
Q Consensus 612 g~L~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~g-----~~~~~T~~~~~t~~P~wne~~~~~v~~~--~~~l~i~v~d~ 684 (1026)
+.|+|.|++|++|+.. +..+.+||||+|.+. ...++|++++++.||.|||.|.|.+... ...|.|+|||+
T Consensus 13 ~~l~v~i~~a~nL~~~---~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~~~~l~v~v~d~ 89 (131)
T cd04026 13 NKLTVEVREAKNLIPM---DPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPADKDRRLSIEVWDW 89 (131)
T ss_pred CEEEEEEEEeeCCCCc---CCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchhcCCEEEEEEEEC
Confidence 6899999999999986 556789999999985 3679999999999999999999998764 56799999999
Q ss_pred CCCCCCCccCCCCCCCCCeeEEEEEEcccccCCceEeeeEeeee
Q 001696 685 CHLGGGEKQNGSSAVRDSRIGKVRIRLSTLEAHRIYTHSYPLLV 728 (1026)
Q Consensus 685 ~~~~~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~ 728 (1026)
+.++ ++++||++.++|+++... ....||+|.+
T Consensus 90 ~~~~-----------~~~~iG~~~~~l~~l~~~-~~~~w~~L~~ 121 (131)
T cd04026 90 DRTT-----------RNDFMGSLSFGVSELIKM-PVDGWYKLLN 121 (131)
T ss_pred CCCC-----------CcceeEEEEEeHHHhCcC-ccCceEECcC
Confidence 8754 789999999999999755 5688999974
No 157
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=99.56 E-value=5.8e-15 Score=142.56 Aligned_cols=115 Identities=20% Similarity=0.350 Sum_probs=94.1
Q ss_pred cc-eeEeeeccccceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeEeeeecCCCCCeEeEEEEEEec--C
Q 001696 271 GE-RFTSTYDLVEQMSYLYVRVVKAKDLPPSSITGSCDPYVEVKMGN-----YKGRTKHFEKRMNPEWNQVFAFSKE--R 342 (1026)
Q Consensus 271 g~-~~~~~y~~~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~-----~~~kT~~~~~t~nP~wne~f~f~v~--~ 342 (1026)
|+ ++++.|+. ..+.|.|+|++|+||+..+ .+.+||||+|.+.+ .+++|++++++.||+|||+|.|.+. +
T Consensus 2 G~i~~sl~y~~--~~~~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~ 78 (137)
T cd08409 2 GDIQISLTYNP--TLNRLTVVVLRARGLRQLD-HAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSRQ 78 (137)
T ss_pred cEEEEEEEECC--CCCeEEEEEEEecCCCccc-CCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHHH
Confidence 45 88999987 5689999999999999988 77899999999864 3568999999999999999999984 3
Q ss_pred CCCCeEEEEEEeCCCCCCCceeEEEEEEccccCCCCCCCCCCCCEEEEeec
Q 001696 343 IQSSMLEVFLKDKEMVGRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLED 393 (1026)
Q Consensus 343 ~~~~~L~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~ 393 (1026)
.....|.|+|||.+..+++++||++.+.......+...+ .|..+..
T Consensus 79 l~~~~L~~~V~~~~~~~~~~~lG~v~ig~~~~~~~~~~~-----hW~~~~~ 124 (137)
T cd08409 79 LDTASLSLSVMQSGGVRKSKLLGRVVLGPFMYARGKELE-----HWNDMLS 124 (137)
T ss_pred hCccEEEEEEEeCCCCCCcceEEEEEECCcccCCChHHH-----HHHHHHh
Confidence 445789999999999889999999999865444332222 5666554
No 158
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=99.56 E-value=2.1e-14 Score=139.60 Aligned_cols=99 Identities=29% Similarity=0.539 Sum_probs=87.0
Q ss_pred ceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-----------------------------eeEeeeecCCCCCeEe
Q 001696 283 QMSYLYVRVVKAKDLPPSSITGSCDPYVEVKMGNY-----------------------------KGRTKHFEKRMNPEWN 333 (1026)
Q Consensus 283 ~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~-----------------------------~~kT~~~~~t~nP~wn 333 (1026)
+.+.|.|+|++|++|.++|..|.+||||+|.+.+. .++|++++++.||.||
T Consensus 26 ~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~Wn 105 (153)
T cd08676 26 PIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLNPVWN 105 (153)
T ss_pred CeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCCCccc
Confidence 56899999999999999999999999999998642 3689999999999999
Q ss_pred EEEEEEecCCCCCeEEEEEEeCCCCCCCceeEEEEEEccccCCCCCCCCCCCCEEEEe
Q 001696 334 QVFAFSKERIQSSMLEVFLKDKEMVGRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRL 391 (1026)
Q Consensus 334 e~f~f~v~~~~~~~L~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L 391 (1026)
|+|.|.+..+....|.|+|||++ +++||++.+++.++... .. ..||+|
T Consensus 106 E~F~f~v~~~~~~~L~i~V~D~d----d~~IG~v~i~l~~l~~~-~~-----d~W~~L 153 (153)
T cd08676 106 ETFRFEVEDVSNDQLHLDIWDHD----DDFLGCVNIPLKDLPSC-GL-----DSWFKL 153 (153)
T ss_pred cEEEEEeccCCCCEEEEEEEecC----CCeEEEEEEEHHHhCCC-CC-----CCeEeC
Confidence 99999997766689999999987 89999999999999832 22 389986
No 159
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=99.56 E-value=2.8e-14 Score=135.89 Aligned_cols=105 Identities=26% Similarity=0.373 Sum_probs=93.1
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeEeeeecC-CCCCeEeEEEEEEecCC---CCCeEEEEEEeCCCCCC
Q 001696 285 SYLYVRVVKAKDLPPSSITGSCDPYVEVKMGNYKGRTKHFEK-RMNPEWNQVFAFSKERI---QSSMLEVFLKDKEMVGR 360 (1026)
Q Consensus 285 ~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~-t~nP~wne~f~f~v~~~---~~~~L~v~V~d~~~~~~ 360 (1026)
|.|.|+|++|++|+..+..+.+||||+|++++...+|+++++ +.||.|||+|.|.+... ....|.|+|||.+.+++
T Consensus 1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~ 80 (124)
T cd04049 1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDNFSD 80 (124)
T ss_pred CeEEEEEEecCCCCCCCCCCCcCceEEEEECCEeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECccCCC
Confidence 479999999999999888889999999999998889998875 89999999999999766 35789999999999989
Q ss_pred CceeEEEEEEccccCCCCCCCCCCCCEEEEeecC
Q 001696 361 DDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLEDR 394 (1026)
Q Consensus 361 d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~ 394 (1026)
+++||++.+++.++......+ .|+.|...
T Consensus 81 d~~iG~~~i~l~~l~~~~~~~-----~~~~l~p~ 109 (124)
T cd04049 81 DDFIGEATIHLKGLFEEGVEP-----GTAELVPA 109 (124)
T ss_pred CCeEEEEEEEhHHhhhCCCCc-----CceEeecc
Confidence 999999999999998765443 89998875
No 160
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=99.56 E-value=1.8e-14 Score=135.70 Aligned_cols=93 Identities=27% Similarity=0.314 Sum_probs=82.8
Q ss_pred ceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeEeeeecCCCCCeEeEEEEEEecC-CCCCeEEEEEEeCCCCCCC
Q 001696 283 QMSYLYVRVVKAKDLPPSSITGSCDPYVEVKMGNYKGRTKHFEKRMNPEWNQVFAFSKER-IQSSMLEVFLKDKEMVGRD 361 (1026)
Q Consensus 283 ~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~v~~-~~~~~L~v~V~d~~~~~~d 361 (1026)
.++.|.|+|++|++|+. +..+.+||||+|.+++++++|++++++.||+|||+|.|.... .....|.|+|||++.+++|
T Consensus 26 ~~~~L~V~V~~A~~L~~-d~~g~~DPYVkV~~~~~~~kT~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d~~s~d 104 (127)
T cd04032 26 GLATLTVTVLRATGLWG-DYFTSTDGYVKVFFGGQEKRTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDRDNGWDD 104 (127)
T ss_pred CcEEEEEEEEECCCCCc-CcCCCCCeEEEEEECCccccCceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeCCCCCCC
Confidence 45899999999999984 667889999999999999999999999999999999997433 3467999999999999999
Q ss_pred ceeEEEEEEccccCC
Q 001696 362 DYLGRVAFDLNEVPT 376 (1026)
Q Consensus 362 ~~lG~~~i~l~~l~~ 376 (1026)
++||++.++|.....
T Consensus 105 d~IG~~~i~l~~~~~ 119 (127)
T cd04032 105 DLLGTCSVVPEAGVH 119 (127)
T ss_pred CeeEEEEEEecCCce
Confidence 999999999997664
No 161
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=99.56 E-value=2.4e-14 Score=138.05 Aligned_cols=103 Identities=34% Similarity=0.546 Sum_probs=90.9
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEEC----CeeeEeeeecCCCCCeEeEEEEEEecCC---------------CCCe
Q 001696 287 LYVRVVKAKDLPPSSITGSCDPYVEVKMG----NYKGRTKHFEKRMNPEWNQVFAFSKERI---------------QSSM 347 (1026)
Q Consensus 287 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~----~~~~kT~~~~~t~nP~wne~f~f~v~~~---------------~~~~ 347 (1026)
|.|+|++|++|+.+ ..|.+||||+|.++ +.+++|++++++.||.|||+|.|.+... ....
T Consensus 1 L~V~Vi~A~~L~~~-~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~ 79 (137)
T cd08675 1 LSVRVLECRDLALK-SNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSE 79 (137)
T ss_pred CEEEEEEccCCCcc-cCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccE
Confidence 57999999999988 78899999999998 6689999999999999999999997654 4578
Q ss_pred EEEEEEeCCCCCCCceeEEEEEEccccCCCCCCCCCCCCEEEEeecCC
Q 001696 348 LEVFLKDKEMVGRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLEDRR 395 (1026)
Q Consensus 348 L~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~ 395 (1026)
|.|+|||++..+++++||++.+++.++....... .||+|....
T Consensus 80 l~i~V~d~~~~~~~~~IG~~~i~l~~l~~~~~~~-----~W~~L~~~~ 122 (137)
T cd08675 80 LRVELWHASMVSGDDFLGEVRIPLQGLQQAGSHQ-----AWYFLQPRE 122 (137)
T ss_pred EEEEEEcCCcCcCCcEEEEEEEehhhccCCCccc-----ceEecCCcC
Confidence 9999999999889999999999999987554433 999999875
No 162
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=99.56 E-value=2.7e-14 Score=137.50 Aligned_cols=91 Identities=25% Similarity=0.365 Sum_probs=80.5
Q ss_pred eEEEEEEEEecCCCCCccCCCCCCcCcEEEEEEC-------CEEEEeeeecCCCCceeecEEEEEeeCC-----CCEEEE
Q 001696 612 GILEVGILGAQGLLPMKMKDGRGSTDAYCIAKYG-------QKWVRTRTILDTFNPKWNEQYTWEVYDP-----CTVITL 679 (1026)
Q Consensus 612 g~L~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~g-------~~~~~T~~~~~t~~P~wne~~~~~v~~~-----~~~l~i 679 (1026)
+.|+|.|++|++|+.+ +..|.+||||+|.+. ....||+++++++||+|||.|.|++... ...|.|
T Consensus 16 ~~L~V~Vi~A~~L~~~---~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l~~ 92 (133)
T cd04009 16 QSLRVEILNARNLLPL---DSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALLLF 92 (133)
T ss_pred CEEEEEEEEeeCCCCc---CCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechhhcccCCCEEEE
Confidence 6899999999999987 567899999999884 3479999999999999999999999752 457999
Q ss_pred EEEeCCCCCCCCccCCCCCCCCCeeEEEEEEcccccC
Q 001696 680 GVFDNCHLGGGEKQNGSSAVRDSRIGKVRIRLSTLEA 716 (1026)
Q Consensus 680 ~v~d~~~~~~~~~~~~~~~~~~~~lG~~~i~l~~l~~ 716 (1026)
+|||++.++ ++++||++.|+|++|..
T Consensus 93 ~V~d~d~~~-----------~d~~iG~~~i~l~~l~~ 118 (133)
T cd04009 93 TVKDYDLLG-----------SNDFEGEAFLPLNDIPG 118 (133)
T ss_pred EEEecCCCC-----------CCcEeEEEEEeHHHCCc
Confidence 999999865 79999999999999864
No 163
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=99.56 E-value=2.9e-14 Score=137.95 Aligned_cols=92 Identities=32% Similarity=0.528 Sum_probs=85.9
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeEeeeecCCCCCeEeEEEEEEecCCCCCeEEEEEEeCCCCCCCcee
Q 001696 285 SYLYVRVVKAKDLPPSSITGSCDPYVEVKMGNYKGRTKHFEKRMNPEWNQVFAFSKERIQSSMLEVFLKDKEMVGRDDYL 364 (1026)
Q Consensus 285 ~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~v~V~d~~~~~~d~~l 364 (1026)
|.|+|+|++|++|+..+. +.+||||++++++++.+|++++++.||+|||+|.|.+.++ ...|.|+|||++.+++|++|
T Consensus 2 G~L~V~Vi~a~nL~~~d~-~~sDPYV~v~~g~~~~kT~vvk~t~nP~WnE~f~f~i~~~-~~~l~~~V~D~d~~~~dd~i 79 (145)
T cd04038 2 GLLKVRVVRGTNLAVRDF-TSSDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVPNP-MAPLKLEVFDKDTFSKDDSM 79 (145)
T ss_pred eEEEEEEEeeECCCCCCC-CCcCcEEEEEECCEEEEeeeEcCCCCCeecccEEEEecCC-CCEEEEEEEECCCCCCCCEE
Confidence 689999999999998887 8899999999999999999999999999999999999777 67899999999999999999
Q ss_pred EEEEEEccccCCCC
Q 001696 365 GRVAFDLNEVPTRV 378 (1026)
Q Consensus 365 G~~~i~l~~l~~~~ 378 (1026)
|++.+++.++....
T Consensus 80 G~a~i~l~~l~~~~ 93 (145)
T cd04038 80 GEAEIDLEPLVEAA 93 (145)
T ss_pred EEEEEEHHHhhhhh
Confidence 99999999987653
No 164
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.55 E-value=4.1e-14 Score=133.23 Aligned_cols=104 Identities=29% Similarity=0.446 Sum_probs=92.6
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-eeEeeeecCCCCCeEeEEEEEEecCCCCCeEEEEEEeCCCCCCCce
Q 001696 285 SYLYVRVVKAKDLPPSSITGSCDPYVEVKMGNY-KGRTKHFEKRMNPEWNQVFAFSKERIQSSMLEVFLKDKEMVGRDDY 363 (1026)
Q Consensus 285 ~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~-~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~v~V~d~~~~~~d~~ 363 (1026)
|.|+|+|++|++|+..+..+.+||||+|.+++. ..+|++++++.||.|||+|.|.+... ...|.|+|||++.+++|++
T Consensus 1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~~-~~~L~v~v~d~~~~~~d~~ 79 (120)
T cd04045 1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVTSP-NQKITLEVMDYEKVGKDRS 79 (120)
T ss_pred CeEEEEEEeeECCCCccCCCCcCCEEEEEECCEEeeceeEECCCcCCccCceEEEEecCC-CCEEEEEEEECCCCCCCCe
Confidence 478999999999999998899999999999874 68999999999999999999998665 4689999999999999999
Q ss_pred eEEEEEEccccCCCCCCCCCCCCEEEEeecCC
Q 001696 364 LGRVAFDLNEVPTRVPPDSPLAPQWYRLEDRR 395 (1026)
Q Consensus 364 lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~ 395 (1026)
||++.+++.++.... .+ .||.|.+.+
T Consensus 80 IG~~~~~l~~l~~~~-~~-----~~~~~~~~~ 105 (120)
T cd04045 80 LGSVEINVSDLIKKN-ED-----GKYVEYDDE 105 (120)
T ss_pred eeEEEEeHHHhhCCC-CC-----ceEEecCCC
Confidence 999999999998763 33 799888765
No 165
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=99.55 E-value=1.5e-14 Score=139.98 Aligned_cols=100 Identities=21% Similarity=0.237 Sum_probs=85.9
Q ss_pred eEEEEEEEEecCCCCCccCCCCCCcCcEEEEEEC--C---EEEEeeeecCCCCceeecEEEEEeeC---CCCEEEEEEEe
Q 001696 612 GILEVGILGAQGLLPMKMKDGRGSTDAYCIAKYG--Q---KWVRTRTILDTFNPKWNEQYTWEVYD---PCTVITLGVFD 683 (1026)
Q Consensus 612 g~L~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~g--~---~~~~T~~~~~t~~P~wne~~~~~v~~---~~~~l~i~v~d 683 (1026)
+.|.|.|++|+||+.+ +..|.+||||++++. + .+.||++++++.||.|||.|.|.+.. ....|.|+|||
T Consensus 15 ~~L~V~vi~a~~L~~~---d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~~~~~l~~~v~d 91 (136)
T cd08404 15 NRLTVVVLKARHLPKM---DVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEELEDISVEFLVLD 91 (136)
T ss_pred CeEEEEEEEeeCCCcc---ccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHHHhCCCEEEEEEEE
Confidence 6899999999999987 667899999999883 3 25789999999999999999999874 35579999999
Q ss_pred CCCCCCCCccCCCCCCCCCeeEEEEEEcccccCCceEeeeEeee
Q 001696 684 NCHLGGGEKQNGSSAVRDSRIGKVRIRLSTLEAHRIYTHSYPLL 727 (1026)
Q Consensus 684 ~~~~~~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~ 727 (1026)
++.++ ++++||++.|++... +....+|++|.
T Consensus 92 ~d~~~-----------~~~~iG~~~~~~~~~--~~~~~~w~~l~ 122 (136)
T cd08404 92 SDRVT-----------KNEVIGRLVLGPKAS--GSGGHHWKEVC 122 (136)
T ss_pred CCCCC-----------CCccEEEEEECCcCC--CchHHHHHHHH
Confidence 99865 789999999999993 44568999986
No 166
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=99.55 E-value=5.5e-14 Score=132.11 Aligned_cols=91 Identities=19% Similarity=0.327 Sum_probs=76.0
Q ss_pred eEEEEEEEEEeEecCCCCCCCCCCcEEEEEE---CC--eEEEeeeecCCCC-CCcccceeEEEeeCC-CcCeEEEEEEEc
Q 001696 447 LWYLRVNVIEAQDIVPNDRNRLPEGFVKVQV---GN--QVLKTKICPTPTT-NPLWNEDLVFVAAEP-FEEQLFLTVEDR 519 (1026)
Q Consensus 447 ~~~l~V~I~~a~~L~~~d~~~~~dpyV~v~l---g~--~~~kT~~~~~~t~-nP~wne~f~f~v~~~-~~~~L~i~V~d~ 519 (1026)
.+.|+|.|++|+||+.+...+.+||||+|++ ++ .+.||+++ ++|. ||.|||+|.|.+... .+-.|.|+|||+
T Consensus 13 ~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~-k~t~~~P~fNEsF~Fdv~~~~~~v~l~v~v~d~ 91 (135)
T cd08692 13 NSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLV-KSSNGQVKWGETMIFPVTQQEHGIQFLIKLYSR 91 (135)
T ss_pred CCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccE-ECCCCCceecceEEEeCCchhheeEEEEEEEeC
Confidence 3479999999999998866677899999998 22 36789988 6774 699999999998765 334788999999
Q ss_pred cCCCCCceeEEEEEeCccc
Q 001696 520 VHASKDEVLGKISLPLHIF 538 (1026)
Q Consensus 520 d~~~~d~~lG~~~i~l~~l 538 (1026)
+..+++++||++.+.....
T Consensus 92 ~~~~~n~~IG~v~lG~~~~ 110 (135)
T cd08692 92 SSVRRKHFLGQVWISSDSS 110 (135)
T ss_pred CCCcCCceEEEEEECCccC
Confidence 8888999999999999763
No 167
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=99.55 E-value=6.9e-14 Score=132.95 Aligned_cols=116 Identities=23% Similarity=0.320 Sum_probs=93.5
Q ss_pred EEEEEEEEecCCCCCccCCCCCCcCcEEEEEECCE-EEEeeeecCCCCceeecEEEEEeeCCCCEEEEEEEeCCCCCCCC
Q 001696 613 ILEVGILGAQGLLPMKMKDGRGSTDAYCIAKYGQK-WVRTRTILDTFNPKWNEQYTWEVYDPCTVITLGVFDNCHLGGGE 691 (1026)
Q Consensus 613 ~L~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~g~~-~~~T~~~~~t~~P~wne~~~~~v~~~~~~l~i~v~d~~~~~~~~ 691 (1026)
.|.|+|++|+ |... +..+.+||||+|+++++ ..+|++++++.||.|||.|.|.+. ....|.|+|||++.++
T Consensus 3 ~L~V~i~~a~-l~~~---~~~~~~dPyv~v~~~~~~~~kT~v~~~t~~P~Wne~f~~~~~-~~~~l~~~V~d~~~~~--- 74 (125)
T cd04021 3 QLQITVESAK-LKSN---SKSFKPDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLVT-PQSTLEFKVWSHHTLK--- 74 (125)
T ss_pred eEEEEEEeeE-CCCC---CcCCCCCeEEEEEECCcccEEeeeeCCCCCCccccEEEEEeC-CCCEEEEEEEeCCCCC---
Confidence 5889999998 5443 44778999999999887 899999999999999999999985 4568999999999864
Q ss_pred ccCCCCCCCCCeeEEEEEEcccccCCc---e--EeeeEeeeecCCCCCccCcEEEEEE
Q 001696 692 KQNGSSAVRDSRIGKVRIRLSTLEAHR---I--YTHSYPLLVLHPHGVKKMGELQLAI 744 (1026)
Q Consensus 692 ~~~~~~~~~~~~lG~~~i~l~~l~~~~---~--~~~~~~L~~~~~~g~~~~G~i~l~~ 744 (1026)
.+++||++.++|+++..+. . +..|++|........+..|.|.+++
T Consensus 75 --------~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 124 (125)
T cd04021 75 --------ADVLLGEASLDLSDILKNHNGKLENVKLTLNLSSENKGSSVKVGELTVIL 124 (125)
T ss_pred --------CCcEEEEEEEEHHHhHhhcCCCccceEEEEEEEccCCCcceeeeeEEEEe
Confidence 7999999999999985432 1 3468999854421334569988765
No 168
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=99.55 E-value=4.7e-14 Score=135.83 Aligned_cols=114 Identities=30% Similarity=0.534 Sum_probs=98.0
Q ss_pred eeEeeeccccceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeEeeeecCCCCCeEeEEEEEEecCC-CCC
Q 001696 273 RFTSTYDLVEQMSYLYVRVVKAKDLPPSSITGSCDPYVEVKMGN-----YKGRTKHFEKRMNPEWNQVFAFSKERI-QSS 346 (1026)
Q Consensus 273 ~~~~~y~~~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~-----~~~kT~~~~~t~nP~wne~f~f~v~~~-~~~ 346 (1026)
.+++.|.. +.|+|+|++|++|+..+..+.+||||+|.+.+ ..++|++++++.||.|||+|.|.+... ...
T Consensus 5 ~~~~~~~~----~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~~~ 80 (131)
T cd04026 5 YLKISVKD----NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPADKDR 80 (131)
T ss_pred EEEEEECC----CEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchhcCC
Confidence 66777754 88999999999999988888999999999963 578999999999999999999998653 346
Q ss_pred eEEEEEEeCCCCCCCceeEEEEEEccccCCCCCCCCCCCCEEEEeecCCC
Q 001696 347 MLEVFLKDKEMVGRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLEDRRG 396 (1026)
Q Consensus 347 ~L~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~ 396 (1026)
.|.|+|||++..+++++||++.+++.++... .. ..||+|.+...
T Consensus 81 ~l~v~v~d~~~~~~~~~iG~~~~~l~~l~~~-~~-----~~w~~L~~~~~ 124 (131)
T cd04026 81 RLSIEVWDWDRTTRNDFMGSLSFGVSELIKM-PV-----DGWYKLLNQEE 124 (131)
T ss_pred EEEEEEEECCCCCCcceeEEEEEeHHHhCcC-cc-----CceEECcCccc
Confidence 8999999999888999999999999999854 22 38999987653
No 169
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=99.54 E-value=4.2e-14 Score=137.51 Aligned_cols=102 Identities=28% Similarity=0.541 Sum_probs=89.4
Q ss_pred cCCceEEEEEEEEEeEecCCCCCCCCCCcEEEEEECC-----------------------------eEEEeeeecCCCCC
Q 001696 443 VSPKLWYLRVNVIEAQDIVPNDRNRLPEGFVKVQVGN-----------------------------QVLKTKICPTPTTN 493 (1026)
Q Consensus 443 ~~p~~~~l~V~I~~a~~L~~~d~~~~~dpyV~v~lg~-----------------------------~~~kT~~~~~~t~n 493 (1026)
..|..+.|+|+|++|++|...|.++.+||||+|.++. +.++|+++ +++.|
T Consensus 23 ~~~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~-~~tln 101 (153)
T cd08676 23 AEPPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVK-PQTLN 101 (153)
T ss_pred cCCCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEeccee-cCCCC
Confidence 3567889999999999999999999999999999953 24789998 79999
Q ss_pred CcccceeEEEeeCCCcCeEEEEEEEccCCCCCceeEEEEEeCcccccccCCCCccceeEEc
Q 001696 494 PLWNEDLVFVAAEPFEEQLFLTVEDRVHASKDEVLGKISLPLHIFEKRLDHRPVHSRWFNL 554 (1026)
Q Consensus 494 P~wne~f~f~v~~~~~~~L~i~V~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L 554 (1026)
|.|||.|.|.+.+.....|.|+|||++ +++||++.+++.++... ....||+|
T Consensus 102 P~WnE~F~f~v~~~~~~~L~i~V~D~d----d~~IG~v~i~l~~l~~~-----~~d~W~~L 153 (153)
T cd08676 102 PVWNETFRFEVEDVSNDQLHLDIWDHD----DDFLGCVNIPLKDLPSC-----GLDSWFKL 153 (153)
T ss_pred CccccEEEEEeccCCCCEEEEEEEecC----CCeEEEEEEEHHHhCCC-----CCCCeEeC
Confidence 999999999998776779999999996 89999999999998732 36899986
No 170
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=99.54 E-value=2.1e-14 Score=138.66 Aligned_cols=102 Identities=21% Similarity=0.307 Sum_probs=86.8
Q ss_pred CceEEEEEEEEecCCCCCccCCCCCCcCcEEEEEEC-----CEEEEeeeecCCCCceeecEEEEEeeCC---CCEEEEEE
Q 001696 610 PVGILEVGILGAQGLLPMKMKDGRGSTDAYCIAKYG-----QKWVRTRTILDTFNPKWNEQYTWEVYDP---CTVITLGV 681 (1026)
Q Consensus 610 ~~g~L~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~g-----~~~~~T~~~~~t~~P~wne~~~~~v~~~---~~~l~i~v 681 (1026)
..|.|.|+|++|+||+++ +..|.+||||+|.+. ....+|++++++.||.|||.|.|.+..+ ...|.|+|
T Consensus 11 ~~~~L~V~Vi~a~~L~~~---d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~~~l~~~V 87 (133)
T cd08384 11 QRRGLIVGIIRCVNLAAM---DANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAKKTLEITV 87 (133)
T ss_pred CCCEEEEEEEEEcCCCCc---CCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhCCCEEEEEE
Confidence 348999999999999987 667899999999984 2358999999999999999999998753 45799999
Q ss_pred EeCCCCCCCCccCCCCCCCCCeeEEEEEEcccccCCceEeeeEeee
Q 001696 682 FDNCHLGGGEKQNGSSAVRDSRIGKVRIRLSTLEAHRIYTHSYPLL 727 (1026)
Q Consensus 682 ~d~~~~~~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~ 727 (1026)
||++..+ ++++||.+.|++... +....+||++.
T Consensus 88 ~d~d~~~-----------~~~~lG~~~i~l~~~--~~~~~~W~~~l 120 (133)
T cd08384 88 WDKDIGK-----------SNDYIGGLQLGINAK--GERLRHWLDCL 120 (133)
T ss_pred EeCCCCC-----------CccEEEEEEEecCCC--CchHHHHHHHH
Confidence 9998754 789999999999863 44458899886
No 171
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.54 E-value=6.4e-14 Score=131.61 Aligned_cols=112 Identities=28% Similarity=0.464 Sum_probs=95.8
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCe-eeEeeeecCCCCCeEeEEEEEEecCCCCCeEEEEEEeCCCCCCCceeE
Q 001696 287 LYVRVVKAKDLPPSSITGSCDPYVEVKMGNY-KGRTKHFEKRMNPEWNQVFAFSKERIQSSMLEVFLKDKEMVGRDDYLG 365 (1026)
Q Consensus 287 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~-~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~v~V~d~~~~~~d~~lG 365 (1026)
|+|+|++|++|+..+..+.+||||+|.+++. .++|+++.++.||.|||+|.|.+.......|.|+|||++..+++++||
T Consensus 1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~~~~~~T~v~~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~~~~~~~iG 80 (115)
T cd04040 1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWDRGGKDDLLG 80 (115)
T ss_pred CEEEEEeeeCCCCCCCCCCCCCeEEEEECCCcceeeceecCCCCCcccccEEEEeccCCCCEEEEEEEeCCCCCCCCceE
Confidence 5799999999999888889999999999764 579999999999999999999987655678999999999988999999
Q ss_pred EEEEEccccCCCCCCCCCCCCEEEEeecCCCCCcccceEE
Q 001696 366 RVAFDLNEVPTRVPPDSPLAPQWYRLEDRRGEGKVRGQTM 405 (1026)
Q Consensus 366 ~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~ 405 (1026)
++.+++.++..+...+ .|++|....+ ...|.+.
T Consensus 81 ~~~~~l~~l~~~~~~~-----~~~~L~~~g~--~~~~~~~ 113 (115)
T cd04040 81 SAYIDLSDLEPEETTE-----LTLPLDGQGG--GKLGAVF 113 (115)
T ss_pred EEEEEHHHcCCCCcEE-----EEEECcCCCC--ccCceEE
Confidence 9999999988764443 8999986543 3456654
No 172
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=99.54 E-value=1.3e-13 Score=131.08 Aligned_cols=120 Identities=24% Similarity=0.295 Sum_probs=97.8
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-eeEeeeecCCCCCeEeEEEEEEecCCCCCeEEEEEEeCCCCCCCcee
Q 001696 286 YLYVRVVKAKDLPPSSITGSCDPYVEVKMGNY-KGRTKHFEKRMNPEWNQVFAFSKERIQSSMLEVFLKDKEMVGRDDYL 364 (1026)
Q Consensus 286 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~-~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~v~V~d~~~~~~d~~l 364 (1026)
.|.|+|++|+ |...+..+.+||||+|+++++ ..+|++++++.||.|||+|.|.+.. ...|.|+|||++..+.+++|
T Consensus 3 ~L~V~i~~a~-l~~~~~~~~~dPyv~v~~~~~~~~kT~v~~~t~~P~Wne~f~~~~~~--~~~l~~~V~d~~~~~~~~~i 79 (125)
T cd04021 3 QLQITVESAK-LKSNSKSFKPDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLVTP--QSTLEFKVWSHHTLKADVLL 79 (125)
T ss_pred eEEEEEEeeE-CCCCCcCCCCCeEEEEEECCcccEEeeeeCCCCCCccccEEEEEeCC--CCEEEEEEEeCCCCCCCcEE
Confidence 6899999999 555555788999999999987 8999999999999999999999864 46899999999999999999
Q ss_pred EEEEEEccccCCCCCCCCCCCCEEEEeecCCC-CCcccceEEEEE
Q 001696 365 GRVAFDLNEVPTRVPPDSPLAPQWYRLEDRRG-EGKVRGQTMLAI 408 (1026)
Q Consensus 365 G~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~-~~~~~G~i~l~~ 408 (1026)
|++.++|.++.............|++|..... .+...|+|.+.+
T Consensus 80 G~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 124 (125)
T cd04021 80 GEASLDLSDILKNHNGKLENVKLTLNLSSENKGSSVKVGELTVIL 124 (125)
T ss_pred EEEEEEHHHhHhhcCCCccceEEEEEEEccCCCcceeeeeEEEEe
Confidence 99999999997654322222235899986552 335789988764
No 173
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=99.53 E-value=1.7e-14 Score=139.74 Aligned_cols=115 Identities=28% Similarity=0.435 Sum_probs=97.4
Q ss_pred eeEeeeccccceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-----eeEeeeecCCCCCeEeEEEEEEecCC--CC
Q 001696 273 RFTSTYDLVEQMSYLYVRVVKAKDLPPSSITGSCDPYVEVKMGNY-----KGRTKHFEKRMNPEWNQVFAFSKERI--QS 345 (1026)
Q Consensus 273 ~~~~~y~~~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~-----~~kT~~~~~t~nP~wne~f~f~v~~~--~~ 345 (1026)
++++.|+. ..+.|.|+|++|+||+..+..+.+||||++++.+. +++|+++.++.||.|||+|.|.+... ..
T Consensus 4 ~~~l~y~~--~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l~~ 81 (134)
T cd00276 4 LLSLSYLP--TAERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLEE 81 (134)
T ss_pred EEEEEeeC--CCCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHHhCC
Confidence 78888876 45899999999999999888889999999998652 56899999999999999999998654 25
Q ss_pred CeEEEEEEeCCCCCCCceeEEEEEEccccCCCCCCCCCCCCEEEEeecCCC
Q 001696 346 SMLEVFLKDKEMVGRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLEDRRG 396 (1026)
Q Consensus 346 ~~L~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~ 396 (1026)
..|.|+|||.+..+++++||++.+++.+ .+... ..|++|....+
T Consensus 82 ~~l~~~v~d~~~~~~~~~lG~~~i~l~~--~~~~~-----~~W~~l~~~~~ 125 (134)
T cd00276 82 VSLVITVVDKDSVGRNEVIGQVVLGPDS--GGEEL-----EHWNEMLASPR 125 (134)
T ss_pred cEEEEEEEecCCCCCCceeEEEEECCCC--CCcHH-----HHHHHHHhCCC
Confidence 7899999999998899999999999998 22222 38999987643
No 174
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.53 E-value=4.6e-14 Score=133.95 Aligned_cols=92 Identities=28% Similarity=0.561 Sum_probs=83.3
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCee--eEeeeecCCCCCeEeEEEEEEecCCCCCeEEEEEEeCCCCCCCce
Q 001696 286 YLYVRVVKAKDLPPSSITGSCDPYVEVKMGNYK--GRTKHFEKRMNPEWNQVFAFSKERIQSSMLEVFLKDKEMVGRDDY 363 (1026)
Q Consensus 286 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~v~V~d~~~~~~d~~ 363 (1026)
+|+|+|++|++|+..+..|.+||||+|.+++.. .+|++++++.||.|||+|.|.+..+....|.|+|||++.+++|++
T Consensus 1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~~kT~~v~~t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~~~~dd~ 80 (124)
T cd04037 1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATLPGNSILKISVMDYDLLGSDDL 80 (124)
T ss_pred CEEEEEEECcCCCCCCCCCCCCcEEEEEECCeeccceeeEEECCCCCccceEEEEEecCCCCCEEEEEEEECCCCCCCce
Confidence 378999999999999998999999999999864 578889999999999999999876667899999999999999999
Q ss_pred eEEEEEEccccCCC
Q 001696 364 LGRVAFDLNEVPTR 377 (1026)
Q Consensus 364 lG~~~i~l~~l~~~ 377 (1026)
||++.+++.+....
T Consensus 81 iG~~~i~l~~~~~~ 94 (124)
T cd04037 81 IGETVIDLEDRFFS 94 (124)
T ss_pred eEEEEEeecccccc
Confidence 99999999987653
No 175
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=99.53 E-value=2.2e-14 Score=138.52 Aligned_cols=114 Identities=24% Similarity=0.394 Sum_probs=93.4
Q ss_pred eeEeeeccccceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeEeeeecCCCCCeEeEEEEEEecC--CCC
Q 001696 273 RFTSTYDLVEQMSYLYVRVVKAKDLPPSSITGSCDPYVEVKMGN-----YKGRTKHFEKRMNPEWNQVFAFSKER--IQS 345 (1026)
Q Consensus 273 ~~~~~y~~~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~-----~~~kT~~~~~t~nP~wne~f~f~v~~--~~~ 345 (1026)
.|++.|.. ..+.|+|+|++|++|++++..|.+||||+|.+.+ .+.+|++++++.||.|||+|.|.+.. ...
T Consensus 4 ~~~~~y~~--~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~~ 81 (134)
T cd08403 4 MFSLCYLP--TAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPENVDN 81 (134)
T ss_pred EEEEEEcC--CCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHHHhCC
Confidence 78889987 5699999999999999999999999999999842 25789999999999999999998743 334
Q ss_pred CeEEEEEEeCCCCCCCceeEEEEEEccccCCCCCCCCCCCCEEEEeecCC
Q 001696 346 SMLEVFLKDKEMVGRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLEDRR 395 (1026)
Q Consensus 346 ~~L~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~ 395 (1026)
..|.|+|||++.++++++||++.+++.....+ ...|+.+....
T Consensus 82 ~~l~~~v~d~~~~~~~~~IG~~~l~~~~~~~~-------~~~w~~~~~~~ 124 (134)
T cd08403 82 VSLIIAVVDYDRVGHNELIGVCRVGPNADGQG-------REHWNEMLANP 124 (134)
T ss_pred CEEEEEEEECCCCCCCceeEEEEECCCCCCch-------HHHHHHHHHCC
Confidence 57999999999999999999999987733211 12677665543
No 176
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=99.52 E-value=2.9e-14 Score=137.69 Aligned_cols=102 Identities=21% Similarity=0.314 Sum_probs=86.3
Q ss_pred ceEEEEEEEEecCCCCCccCCCCCCcCcEEEEEECC-----EEEEeeeecCCCCceeecEEEEEeeC---CCCEEEEEEE
Q 001696 611 VGILEVGILGAQGLLPMKMKDGRGSTDAYCIAKYGQ-----KWVRTRTILDTFNPKWNEQYTWEVYD---PCTVITLGVF 682 (1026)
Q Consensus 611 ~g~L~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~g~-----~~~~T~~~~~t~~P~wne~~~~~v~~---~~~~l~i~v~ 682 (1026)
.+.|.|.|++|+||+++ + .+.+||||++.+.+ .+.||++++++.||.|||.|.|.|.. ....|.|+|+
T Consensus 14 ~~~L~V~V~~a~nL~~~---~-~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~l~~~~L~~~V~ 89 (137)
T cd08409 14 LNRLTVVVLRARGLRQL---D-HAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSRQLDTASLSLSVM 89 (137)
T ss_pred CCeEEEEEEEecCCCcc---c-CCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHHHhCccEEEEEEE
Confidence 37899999999999987 5 67899999998732 35799999999999999999999963 2357999999
Q ss_pred eCCCCCCCCccCCCCCCCCCeeEEEEEEcccccCCceEeeeEeee
Q 001696 683 DNCHLGGGEKQNGSSAVRDSRIGKVRIRLSTLEAHRIYTHSYPLL 727 (1026)
Q Consensus 683 d~~~~~~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~ 727 (1026)
|.+.++ ++++||++.|+......+...++|+.+.
T Consensus 90 ~~~~~~-----------~~~~lG~v~ig~~~~~~~~~~~hW~~~~ 123 (137)
T cd08409 90 QSGGVR-----------KSKLLGRVVLGPFMYARGKELEHWNDML 123 (137)
T ss_pred eCCCCC-----------CcceEEEEEECCcccCCChHHHHHHHHH
Confidence 998754 7899999999987777676678888876
No 177
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.52 E-value=1e-14 Score=160.03 Aligned_cols=125 Identities=29% Similarity=0.481 Sum_probs=110.1
Q ss_pred ceEEEEeecCCCccCCCCCCCCCEEEEEeCCceeeeccCCCCCCcccceeEEEeccCCCCCccceEEEEEeeCCCCC---
Q 001696 2 KLVVEVVDAYDLMPKDGEGSASPFAEVDFLNQLSKTKTIPKNLNPVWNQKLLFDFDQTKSHNHLRIEVSIYHHERRP--- 78 (1026)
Q Consensus 2 ~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~T~~~~~t~nP~Wne~f~f~~~~~~~~~~~~L~~~V~d~d~~~--- 78 (1026)
+++++|++|.+|..+|..|.+||||.+.+++.+++|+++...+||+|||.|.|.+.+.. ..|.+.|||.|+..
T Consensus 296 kitltvlcaqgl~akdktg~sdpyvt~qv~ktkrrtrti~~~lnpvw~ekfhfechnst----drikvrvwded~dlksk 371 (1283)
T KOG1011|consen 296 KITLTVLCAQGLIAKDKTGKSDPYVTAQVGKTKRRTRTIHQELNPVWNEKFHFECHNST----DRIKVRVWDEDNDLKSK 371 (1283)
T ss_pred eeEEeeeecccceecccCCCCCCcEEEeecccchhhHhhhhccchhhhhheeeeecCCC----ceeEEEEecCcccHHHH
Confidence 57899999999999999999999999999999999999999999999999999999876 58999999966542
Q ss_pred ------CCCCccceeEEecCccccccCCceeEEeeccccccccccccccceeEEecCCCCC
Q 001696 79 ------IPGRHFLGRVRIPCSNLVRKGEEVYQRFPLEKKWFLSSVKGEVGLKIYISPQSET 133 (1026)
Q Consensus 79 ------~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~~~~~ 133 (1026)
..+|||||+..|.+..+... .+.||.|+++..++.++|-|++.|...-.+..
T Consensus 372 lrqkl~resddflgqtvievrtlsge---mdvwynlekrtdksavsgairlhisveikgee 429 (1283)
T KOG1011|consen 372 LRQKLTRESDDFLGQTVIEVRTLSGE---MDVWYNLEKRTDKSAVSGAIRLHISVEIKGEE 429 (1283)
T ss_pred HHHHhhhcccccccceeEEEEecccc---hhhhcchhhccchhhccceEEEEEEEEEcCcc
Confidence 23589999999997776643 78999999999999999999999887655443
No 178
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=99.52 E-value=1.2e-13 Score=133.82 Aligned_cols=103 Identities=25% Similarity=0.326 Sum_probs=85.4
Q ss_pred EEEEEEEEEeEecCCCCCCCCCCcEEEEEEC--C---eEEEeeeecCCCCCCcccceeEEEeeCC--CcCeEEEEEEEcc
Q 001696 448 WYLRVNVIEAQDIVPNDRNRLPEGFVKVQVG--N---QVLKTKICPTPTTNPLWNEDLVFVAAEP--FEEQLFLTVEDRV 520 (1026)
Q Consensus 448 ~~l~V~I~~a~~L~~~d~~~~~dpyV~v~lg--~---~~~kT~~~~~~t~nP~wne~f~f~v~~~--~~~~L~i~V~d~d 520 (1026)
+.|+|+|++|++|+.++..+.+||||+|+++ + ..++|+++ +++.||.|||.|.|.+... ....|.|+|||++
T Consensus 15 ~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~-~~t~nP~wne~f~f~i~~~~l~~~~l~~~v~d~~ 93 (136)
T cd08402 15 GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIK-KRTLNPYYNESFSFEVPFEQIQKVHLIVTVLDYD 93 (136)
T ss_pred CeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccce-eCCCCCcccceEEEECCHHHhCCCEEEEEEEeCC
Confidence 4699999999999999988999999999993 2 35789988 7999999999999998643 2347999999999
Q ss_pred CCCCCceeEEEEEeCcccccccCCCCccceeEEcccC
Q 001696 521 HASKDEVLGKISLPLHIFEKRLDHRPVHSRWFNLEKF 557 (1026)
Q Consensus 521 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~~~ 557 (1026)
.++++++||++.+++.... .....|+.+...
T Consensus 94 ~~~~~~~iG~~~i~~~~~~------~~~~~W~~~~~~ 124 (136)
T cd08402 94 RIGKNDPIGKVVLGCNATG------AELRHWSDMLAS 124 (136)
T ss_pred CCCCCceeEEEEECCccCC------hHHHHHHHHHhC
Confidence 9999999999999997642 224667666554
No 179
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=99.52 E-value=1.5e-13 Score=132.62 Aligned_cols=105 Identities=23% Similarity=0.339 Sum_probs=84.3
Q ss_pred CCceEEEEEEEEecCCCCCccCCCCCCcCcEEEEEE--CC---EEEEeeeecCCCCceeecEEEEEeeCC---CCEEEEE
Q 001696 609 PPVGILEVGILGAQGLLPMKMKDGRGSTDAYCIAKY--GQ---KWVRTRTILDTFNPKWNEQYTWEVYDP---CTVITLG 680 (1026)
Q Consensus 609 ~~~g~L~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~--g~---~~~~T~~~~~t~~P~wne~~~~~v~~~---~~~l~i~ 680 (1026)
+..|.|+|.|++|++|+.+ +..|.+||||++.+ +. .+.+|++++++.||.|||.|.|.+... ...|.|+
T Consensus 11 ~~~~~L~V~vi~a~~L~~~---d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~~~~l~~~ 87 (135)
T cd08410 11 PSAGRLNVDIIRAKQLLQT---DMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEELENVSLVFT 87 (135)
T ss_pred CCCCeEEEEEEEecCCCcc---cCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHHHhCCCEEEEE
Confidence 3448999999999999987 56789999999997 32 358999999999999999999998642 3369999
Q ss_pred EEeCCCCCCCCccCCCCCCCCCeeEEEEEEcccccCCceEeeeEeeee
Q 001696 681 VFDNCHLGGGEKQNGSSAVRDSRIGKVRIRLSTLEAHRIYTHSYPLLV 728 (1026)
Q Consensus 681 v~d~~~~~~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~ 728 (1026)
|||++..+ ++++||++.|....... ....+|+.|..
T Consensus 88 V~d~d~~~-----------~~~~iG~~~l~~~~~~~-~~~~~W~~l~~ 123 (135)
T cd08410 88 VYGHNVKS-----------SNDFIGRIVIGQYSSGP-SETNHWRRMLN 123 (135)
T ss_pred EEeCCCCC-----------CCcEEEEEEEcCccCCc-hHHHHHHHHHh
Confidence 99998754 79999999877655433 22477888763
No 180
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.51 E-value=1.2e-13 Score=131.35 Aligned_cols=104 Identities=30% Similarity=0.473 Sum_probs=89.9
Q ss_pred eeEeeeccccceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeEeeeecCCCCCeEeEEEEEE-ec--CCC
Q 001696 273 RFTSTYDLVEQMSYLYVRVVKAKDLPPSSITGSCDPYVEVKMGN-----YKGRTKHFEKRMNPEWNQVFAFS-KE--RIQ 344 (1026)
Q Consensus 273 ~~~~~y~~~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~-----~~~kT~~~~~t~nP~wne~f~f~-v~--~~~ 344 (1026)
.+++.|+. ..+.|.|+|++|++|+..+..+.+||||++.+.+ .+.+|++++++.||.|||+|.|. +. +..
T Consensus 5 ~~~l~y~~--~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~ 82 (123)
T cd04035 5 EFTLLYDP--ANSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEEDIQ 82 (123)
T ss_pred EEEEEEeC--CCCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHHhC
Confidence 78889987 4589999999999999988888999999999842 36899999999999999999996 32 223
Q ss_pred CCeEEEEEEeCCCCCCCceeEEEEEEccccCCCCC
Q 001696 345 SSMLEVFLKDKEMVGRDDYLGRVAFDLNEVPTRVP 379 (1026)
Q Consensus 345 ~~~L~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~ 379 (1026)
...|.|+|||++.+ .+++||++.+++.++..+..
T Consensus 83 ~~~l~~~v~d~~~~-~~~~iG~~~i~l~~l~~~~~ 116 (123)
T cd04035 83 RKTLRLLVLDEDRF-GNDFLGETRIPLKKLKPNQT 116 (123)
T ss_pred CCEEEEEEEEcCCc-CCeeEEEEEEEcccCCCCcc
Confidence 56899999999988 89999999999999987654
No 181
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.51 E-value=7.8e-14 Score=129.70 Aligned_cols=100 Identities=25% Similarity=0.312 Sum_probs=84.9
Q ss_pred CCCCCcCcEEEEEECCE-EEEeeeecCCCCceeecEEEEEeeCC-CCEEEEEEEeCCCCCCCCccCCCCCCCCCeeEEEE
Q 001696 631 DGRGSTDAYCIAKYGQK-WVRTRTILDTFNPKWNEQYTWEVYDP-CTVITLGVFDNCHLGGGEKQNGSSAVRDSRIGKVR 708 (1026)
Q Consensus 631 ~~~~~~dpyv~v~~g~~-~~~T~~~~~t~~P~wne~~~~~v~~~-~~~l~i~v~d~~~~~~~~~~~~~~~~~~~~lG~~~ 708 (1026)
...|.+||||+|.++++ ..+|++++++.||.|||.|.|.+.++ ...|.|.|+|++.+ ++++||++.
T Consensus 8 ~~~G~~dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~------------~d~~iG~~~ 75 (111)
T cd04052 8 SKTGLLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRDR------------HDPVLGSVS 75 (111)
T ss_pred ccCCCCCceEEEEECCEEEEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECCCC------------CCCeEEEEE
Confidence 34678999999999875 58999999999999999999999885 57799999998864 589999999
Q ss_pred EEccccc-CCceEeeeEeeeecCCCCCccCcEEEEEEEEee
Q 001696 709 IRLSTLE-AHRIYTHSYPLLVLHPHGVKKMGELQLAIRFTI 748 (1026)
Q Consensus 709 i~l~~l~-~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~~ 748 (1026)
++|+++. .+.....||+|.. ++.|+|++++.|.|
T Consensus 76 v~L~~l~~~~~~~~~w~~L~~------~~~G~i~~~~~~~p 110 (111)
T cd04052 76 ISLNDLIDATSVGQQWFPLSG------NGQGRIRISALWKP 110 (111)
T ss_pred ecHHHHHhhhhccceeEECCC------CCCCEEEEEEEEec
Confidence 9999984 3444689999962 34699999999976
No 182
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.51 E-value=1.7e-13 Score=132.80 Aligned_cols=103 Identities=28% Similarity=0.371 Sum_probs=84.8
Q ss_pred EEEEEEEEEeEecCCCCCCCCCCcEEEEEE--CC---eEEEeeeecCCCCCCcccceeEEEeeCC--CcCeEEEEEEEcc
Q 001696 448 WYLRVNVIEAQDIVPNDRNRLPEGFVKVQV--GN---QVLKTKICPTPTTNPLWNEDLVFVAAEP--FEEQLFLTVEDRV 520 (1026)
Q Consensus 448 ~~l~V~I~~a~~L~~~d~~~~~dpyV~v~l--g~---~~~kT~~~~~~t~nP~wne~f~f~v~~~--~~~~L~i~V~d~d 520 (1026)
+.|.|+|++|+||+..+..+.+||||+|++ ++ ..++|+++ +++.||.|||.|.|.+... ....|.|+|||++
T Consensus 15 ~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~-~~t~~P~wne~F~f~i~~~~~~~~~l~~~v~d~~ 93 (136)
T cd08405 15 NRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIK-KRTLNPVFNESFIFNIPLERLRETTLIITVMDKD 93 (136)
T ss_pred CeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcce-eCCCCCcccceEEEeCCHHHhCCCEEEEEEEECC
Confidence 369999999999999888889999999998 32 35789999 7999999999999987532 3568999999999
Q ss_pred CCCCCceeEEEEEeCcccccccCCCCccceeEEcccC
Q 001696 521 HASKDEVLGKISLPLHIFEKRLDHRPVHSRWFNLEKF 557 (1026)
Q Consensus 521 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~~~ 557 (1026)
..+++++||++.+++.+... ....|+.+...
T Consensus 94 ~~~~~~~lG~~~i~~~~~~~------~~~~w~~~~~~ 124 (136)
T cd08405 94 RLSRNDLIGKIYLGWKSGGL------ELKHWKDMLSK 124 (136)
T ss_pred CCCCCcEeEEEEECCccCCc------hHHHHHHHHhC
Confidence 99999999999999987522 24556655544
No 183
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.51 E-value=4.6e-14 Score=131.25 Aligned_cols=102 Identities=25% Similarity=0.370 Sum_probs=85.1
Q ss_pred CCCCCCCCEEEEEeCC-ceeeeccCCCCCCcccceeEEEeccCCCCCccceEEEEEeeCCCCCCCCCccceeEEecCccc
Q 001696 17 DGEGSASPFAEVDFLN-QLSKTKTIPKNLNPVWNQKLLFDFDQTKSHNHLRIEVSIYHHERRPIPGRHFLGRVRIPCSNL 95 (1026)
Q Consensus 17 ~~~g~~dpyv~v~~~~-~~~~T~~~~~t~nP~Wne~f~f~~~~~~~~~~~~L~~~V~d~d~~~~~~d~~lG~~~i~l~~l 95 (1026)
..+|.+||||+|++++ ..++|++++++.||+|||+|.|.+.+.. ...|.|.|||++. . ++++||++.++|+++
T Consensus 8 ~~~G~~dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~---~~~l~i~v~d~~~--~-~d~~iG~~~v~L~~l 81 (111)
T cd04052 8 SKTGLLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDRR---KSRVTVVVKDDRD--R-HDPVLGSVSISLNDL 81 (111)
T ss_pred ccCCCCCceEEEEECCEEEEEEeeeccCCCCccCCceEEEecCcC---CCEEEEEEEECCC--C-CCCeEEEEEecHHHH
Confidence 3578999999999987 4679999999999999999999987653 2679999999443 3 789999999999998
Q ss_pred cccCCceeEEeeccccccccccccccceeEEecC
Q 001696 96 VRKGEEVYQRFPLEKKWFLSSVKGEVGLKIYISP 129 (1026)
Q Consensus 96 ~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~ 129 (1026)
...+.....||+|.. ...|+|++++.|.+
T Consensus 82 ~~~~~~~~~w~~L~~-----~~~G~i~~~~~~~p 110 (111)
T cd04052 82 IDATSVGQQWFPLSG-----NGQGRIRISALWKP 110 (111)
T ss_pred HhhhhccceeEECCC-----CCCCEEEEEEEEec
Confidence 765545689999985 24799999998875
No 184
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=99.51 E-value=4.8e-14 Score=136.20 Aligned_cols=103 Identities=26% Similarity=0.347 Sum_probs=85.5
Q ss_pred CCceEEEEEEEEecCCCCCccCCCCCCcCcEEEEEEC--C---EEEEeeeecCCCCceeecEEEEEeeCC---CCEEEEE
Q 001696 609 PPVGILEVGILGAQGLLPMKMKDGRGSTDAYCIAKYG--Q---KWVRTRTILDTFNPKWNEQYTWEVYDP---CTVITLG 680 (1026)
Q Consensus 609 ~~~g~L~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~g--~---~~~~T~~~~~t~~P~wne~~~~~v~~~---~~~l~i~ 680 (1026)
+..|.|+|.|++|++|+++ +..|.+||||+|.+. + ...+|++++++.||.|||.|.|.+... ...|.|+
T Consensus 11 ~~~~~L~V~v~~A~~L~~~---d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~~~~l~~~ 87 (134)
T cd08403 11 PTAGRLTLTIIKARNLKAM---DITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPENVDNVSLIIA 87 (134)
T ss_pred CCCCEEEEEEEEeeCCCcc---ccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHHHhCCCEEEEE
Confidence 3448999999999999987 667899999999983 2 357999999999999999999998642 3469999
Q ss_pred EEeCCCCCCCCccCCCCCCCCCeeEEEEEEcccccCCceEeeeEeee
Q 001696 681 VFDNCHLGGGEKQNGSSAVRDSRIGKVRIRLSTLEAHRIYTHSYPLL 727 (1026)
Q Consensus 681 v~d~~~~~~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~ 727 (1026)
|||++.++ ++++||++.|++... +....+|+++.
T Consensus 88 v~d~~~~~-----------~~~~IG~~~l~~~~~--~~~~~~w~~~~ 121 (134)
T cd08403 88 VVDYDRVG-----------HNELIGVCRVGPNAD--GQGREHWNEML 121 (134)
T ss_pred EEECCCCC-----------CCceeEEEEECCCCC--CchHHHHHHHH
Confidence 99999865 799999999998844 33347888876
No 185
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.51 E-value=1.9e-13 Score=131.76 Aligned_cols=104 Identities=14% Similarity=0.201 Sum_probs=85.9
Q ss_pred CCceEEEEEEEEecCCCCCccCCCCCCcCcEEEEEEC---C---EEEEeeeecCCCCceeecEEEEEeeC---CCCEEEE
Q 001696 609 PPVGILEVGILGAQGLLPMKMKDGRGSTDAYCIAKYG---Q---KWVRTRTILDTFNPKWNEQYTWEVYD---PCTVITL 679 (1026)
Q Consensus 609 ~~~g~L~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~g---~---~~~~T~~~~~t~~P~wne~~~~~v~~---~~~~l~i 679 (1026)
+..+.|.|.|++|+||+++ +..|.+||||++.+. + .+.||++++++.||+|||+|.|++.. ....|.|
T Consensus 12 ~~~~~L~V~VikarnL~~~---~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l~~~~L~~ 88 (138)
T cd08408 12 ALTGRLSVEVIKGSNFKNL---AMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALFQLSEVTLMF 88 (138)
T ss_pred CCCCeEEEEEEEecCCCcc---ccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHHHhCccEEEE
Confidence 3448999999999999987 667899999999883 2 25799999999999999999999974 3557999
Q ss_pred EEEeCCCCCCCCccCCCCCCCCCeeEEEEEEcccccCCceEeeeEeee
Q 001696 680 GVFDNCHLGGGEKQNGSSAVRDSRIGKVRIRLSTLEAHRIYTHSYPLL 727 (1026)
Q Consensus 680 ~v~d~~~~~~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~ 727 (1026)
.|||++.++ ++++||.+.|++.....+ ...+|+.+.
T Consensus 89 ~V~~~~~~~-----------~~~~iG~v~l~~~~~~~~-~~~hW~~~l 124 (138)
T cd08408 89 SVYNKRKMK-----------RKEMIGWFSLGLNSSGEE-EEEHWNEMK 124 (138)
T ss_pred EEEECCCCC-----------CCcEEEEEEECCcCCCch-HHHHHHHHH
Confidence 999999764 799999999998865432 236788775
No 186
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=99.50 E-value=1.6e-14 Score=152.85 Aligned_cols=104 Identities=28% Similarity=0.499 Sum_probs=92.6
Q ss_pred EEEEEEEEeEecCCCCCCCCCCcEEEEEE-----CCeEEEeeeecCCCCCCcccceeEEEeeCC-CcCeEEEEEEEccCC
Q 001696 449 YLRVNVIEAQDIVPNDRNRLPEGFVKVQV-----GNQVLKTKICPTPTTNPLWNEDLVFVAAEP-FEEQLFLTVEDRVHA 522 (1026)
Q Consensus 449 ~l~V~I~~a~~L~~~d~~~~~dpyV~v~l-----g~~~~kT~~~~~~t~nP~wne~f~f~v~~~-~~~~L~i~V~d~d~~ 522 (1026)
.|.|+|.+|+||.++|.+|.+||||++++ +..+++|+++ +.++||+|||+|.|.+... .+..|.|+|||+|..
T Consensus 181 ~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTi-k~~LNP~wNEtftf~Lkp~DkdrRlsiEvWDWDrT 259 (683)
T KOG0696|consen 181 VLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTI-KATLNPVWNETFTFKLKPSDKDRRLSIEVWDWDRT 259 (683)
T ss_pred eEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhh-hhhcCccccceeEEecccccccceeEEEEeccccc
Confidence 59999999999999999999999999999 3357899999 7999999999999998654 566899999999999
Q ss_pred CCCceeEEEEEeCcccccccCCCCccceeEEcccCC
Q 001696 523 SKDEVLGKISLPLHIFEKRLDHRPVHSRWFNLEKFG 558 (1026)
Q Consensus 523 ~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~~~~ 558 (1026)
++++++|...+.+++|... ..+.||.|....
T Consensus 260 sRNDFMGslSFgisEl~K~-----p~~GWyKlLsqe 290 (683)
T KOG0696|consen 260 SRNDFMGSLSFGISELQKA-----PVDGWYKLLSQE 290 (683)
T ss_pred ccccccceecccHHHHhhc-----chhhHHHHhhhh
Confidence 9999999999999999865 467898887654
No 187
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=99.50 E-value=1.2e-13 Score=132.66 Aligned_cols=117 Identities=23% Similarity=0.366 Sum_probs=95.2
Q ss_pred CceEEEEeecCCCccCC--CCCCCCCEEEEEe------CCceeeeccCCCCC-CcccceeEEEeccCCCCCccceEEEEE
Q 001696 1 MKLVVEVVDAYDLMPKD--GEGSASPFAEVDF------LNQLSKTKTIPKNL-NPVWNQKLLFDFDQTKSHNHLRIEVSI 71 (1026)
Q Consensus 1 ~~L~V~v~~a~~L~~~~--~~g~~dpyv~v~~------~~~~~~T~~~~~t~-nP~Wne~f~f~~~~~~~~~~~~L~~~V 71 (1026)
|+|+|+|++|+||+..+ ..+.+||||++++ ...+++|+++.++. ||+|||+|.|.+..++. ..|.|.|
T Consensus 2 ~~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~---~~l~~~V 78 (128)
T cd00275 2 LTLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPEL---AFLRFVV 78 (128)
T ss_pred eEEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCe---EEEEEEE
Confidence 57999999999998887 5789999999999 34678999987765 99999999999886542 5799999
Q ss_pred eeCCCCCCCCCccceeEEecCccccccCCceeEEeeccccccccccccccceeEEe
Q 001696 72 YHHERRPIPGRHFLGRVRIPCSNLVRKGEEVYQRFPLEKKWFLSSVKGEVGLKIYI 127 (1026)
Q Consensus 72 ~d~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 127 (1026)
||++. . ++++||++.+++.++.. ...|++|..........|.|.+++.+
T Consensus 79 ~d~~~--~-~~~~iG~~~~~l~~l~~----g~~~~~l~~~~~~~~~~~~l~v~~~~ 127 (128)
T cd00275 79 YDEDS--G-DDDFLGQACLPLDSLRQ----GYRHVPLLDSKGEPLELSTLFVHIDI 127 (128)
T ss_pred EeCCC--C-CCcEeEEEEEEhHHhcC----ceEEEEecCCCCCCCcceeEEEEEEE
Confidence 99443 2 78999999999998843 35789998765444567888888765
No 188
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=99.50 E-value=3.4e-13 Score=129.45 Aligned_cols=116 Identities=26% Similarity=0.428 Sum_probs=98.6
Q ss_pred EEEEEEEEeecCCCCC--CCCCCCcEEEEEEC------CeeeEeeeecCCC-CCeEeEEEEEEecCCCCCeEEEEEEeCC
Q 001696 286 YLYVRVVKAKDLPPSS--ITGSCDPYVEVKMG------NYKGRTKHFEKRM-NPEWNQVFAFSKERIQSSMLEVFLKDKE 356 (1026)
Q Consensus 286 ~L~V~v~~a~~L~~~d--~~g~~dpyv~v~~~------~~~~kT~~~~~t~-nP~wne~f~f~v~~~~~~~L~v~V~d~~ 356 (1026)
.|+|+|++|++|+..+ ..+.+||||++++. ..+.+|+++.++. ||.|||+|.|.+.......|.|+|||.+
T Consensus 3 ~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~~ 82 (128)
T cd00275 3 TLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDED 82 (128)
T ss_pred EEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEeCC
Confidence 6899999999999887 57789999999994 4568999988776 9999999999987665568999999999
Q ss_pred CCCCCceeEEEEEEccccCCCCCCCCCCCCEEEEeecCCCCCcccceEEEEEEe
Q 001696 357 MVGRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLEDRRGEGKVRGQTMLAIWM 410 (1026)
Q Consensus 357 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~ 410 (1026)
.. ++++||++.+++.++..+ ..|++|.+..+.....|.|.+.+++
T Consensus 83 ~~-~~~~iG~~~~~l~~l~~g--------~~~~~l~~~~~~~~~~~~l~v~~~~ 127 (128)
T cd00275 83 SG-DDDFLGQACLPLDSLRQG--------YRHVPLLDSKGEPLELSTLFVHIDI 127 (128)
T ss_pred CC-CCcEeEEEEEEhHHhcCc--------eEEEEecCCCCCCCcceeEEEEEEE
Confidence 88 999999999999998543 2799998877654567899888765
No 189
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=99.50 E-value=6e-14 Score=135.89 Aligned_cols=101 Identities=29% Similarity=0.409 Sum_probs=87.7
Q ss_pred eEEEEEEEEecCCCCCccCCCCCCcCcEEEEEECC-----EEEEeeeecCCCCceeecEEEEEeeCC---CCEEEEEEEe
Q 001696 612 GILEVGILGAQGLLPMKMKDGRGSTDAYCIAKYGQ-----KWVRTRTILDTFNPKWNEQYTWEVYDP---CTVITLGVFD 683 (1026)
Q Consensus 612 g~L~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~g~-----~~~~T~~~~~t~~P~wne~~~~~v~~~---~~~l~i~v~d 683 (1026)
+.|.|.|++|+||+.. +..+.+||||++++.+ ...+|+++.++.||.|||.|.|.+... ...|.|+|||
T Consensus 14 ~~L~V~v~~a~~L~~~---~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l~~~~l~~~v~d 90 (134)
T cd00276 14 ERLTVVVLKARNLPPS---DGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLEEVSLVITVVD 90 (134)
T ss_pred CEEEEEEEEeeCCCCc---cCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHHhCCcEEEEEEEe
Confidence 7899999999999986 5677899999999843 257999999999999999999998764 5689999999
Q ss_pred CCCCCCCCccCCCCCCCCCeeEEEEEEcccccCCceEeeeEeeee
Q 001696 684 NCHLGGGEKQNGSSAVRDSRIGKVRIRLSTLEAHRIYTHSYPLLV 728 (1026)
Q Consensus 684 ~~~~~~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~ 728 (1026)
.+..+ ++++||.+.|+|++ .+....+||+|..
T Consensus 91 ~~~~~-----------~~~~lG~~~i~l~~--~~~~~~~W~~l~~ 122 (134)
T cd00276 91 KDSVG-----------RNEVIGQVVLGPDS--GGEELEHWNEMLA 122 (134)
T ss_pred cCCCC-----------CCceeEEEEECCCC--CCcHHHHHHHHHh
Confidence 98754 78999999999999 5556689999974
No 190
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.49 E-value=5.9e-14 Score=179.76 Aligned_cols=118 Identities=25% Similarity=0.473 Sum_probs=102.7
Q ss_pred CceEEEEEEEEecCCCCCccCCCCCCcCcEEEEEECCE-EEEeeeecCCCCceeecEEEEEeeCCC--CEEEEEEEeCCC
Q 001696 610 PVGILEVGILGAQGLLPMKMKDGRGSTDAYCIAKYGQK-WVRTRTILDTFNPKWNEQYTWEVYDPC--TVITLGVFDNCH 686 (1026)
Q Consensus 610 ~~g~L~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~g~~-~~~T~~~~~t~~P~wne~~~~~v~~~~--~~l~i~v~d~~~ 686 (1026)
-.|.|.|+|++|+||. +..|++||||++.+|++ +.||++++++.||+|||.|+|.+.+|. +.|+|+|||+|.
T Consensus 1978 ~~G~L~V~V~~a~nl~-----~~~~~sdPyv~l~~g~~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d~ 2052 (2102)
T PLN03200 1978 LPGSLTVTIKRGNNLK-----QSMGNTNAFCKLTLGNGPPRQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKNT 2052 (2102)
T ss_pred CCcceEEEEeeccccc-----cccCCCCCeEEEEECCCCcccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecCc
Confidence 4599999999999997 23689999999999955 889999999999999999999999875 689999999998
Q ss_pred CCCCCccCCCCCCCCCeeEEEEEEcccccCCceEeeeEeeeecCCCCCccCcE---EEEEEEEee
Q 001696 687 LGGGEKQNGSSAVRDSRIGKVRIRLSTLEAHRIYTHSYPLLVLHPHGVKKMGE---LQLAIRFTI 748 (1026)
Q Consensus 687 ~~~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~---i~l~~~f~~ 748 (1026)
++ ++.+|++.|+|.++..+..+..||+|.. +| +|.|+ |+++++|++
T Consensus 2053 f~------------kd~~G~~~i~l~~vv~~~~~~~~~~L~~---~~-~k~G~~~~~~~e~~w~~ 2101 (2102)
T PLN03200 2053 FG------------KSSLGKVTIQIDRVVMEGTYSGEYSLNP---ES-NKDGSSRTLEIEFQWSN 2101 (2102)
T ss_pred cC------------CCCCceEEEEHHHHhcCceeeeeeecCc---cc-ccCCCcceEEEEEEecC
Confidence 74 4589999999999999999999999982 12 34577 999998864
No 191
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.49 E-value=3.8e-13 Score=127.90 Aligned_cols=98 Identities=28% Similarity=0.392 Sum_probs=82.2
Q ss_pred eEEEEEEEEecCCCCCccCCCCCCcCcEEEEEEC-----CEEEEeeeecCCCCceeecEEEEEeeCC----CCEEEEEEE
Q 001696 612 GILEVGILGAQGLLPMKMKDGRGSTDAYCIAKYG-----QKWVRTRTILDTFNPKWNEQYTWEVYDP----CTVITLGVF 682 (1026)
Q Consensus 612 g~L~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~g-----~~~~~T~~~~~t~~P~wne~~~~~v~~~----~~~l~i~v~ 682 (1026)
+.|+|.|++|++|++. +..+.+||||++.+. ....+|++++++.||.|||.|.|..... ...|.|+||
T Consensus 15 ~~L~V~v~~a~~L~~~---~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~~v~ 91 (123)
T cd04035 15 SALHCTIIRAKGLKAM---DANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEEDIQRKTLRLLVL 91 (123)
T ss_pred CEEEEEEEEeeCCCCC---CCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHHhCCCEEEEEEE
Confidence 6899999999999986 556789999999872 2469999999999999999999974432 468999999
Q ss_pred eCCCCCCCCccCCCCCCCCCeeEEEEEEcccccCCceEeeeE
Q 001696 683 DNCHLGGGEKQNGSSAVRDSRIGKVRIRLSTLEAHRIYTHSY 724 (1026)
Q Consensus 683 d~~~~~~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~ 724 (1026)
|++.+ .+++||.+.++|++|..+.....|+
T Consensus 92 d~~~~------------~~~~iG~~~i~l~~l~~~~~~~~~~ 121 (123)
T cd04035 92 DEDRF------------GNDFLGETRIPLKKLKPNQTKQFNI 121 (123)
T ss_pred EcCCc------------CCeeEEEEEEEcccCCCCcceEeec
Confidence 98763 4889999999999998887544444
No 192
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.48 E-value=3.2e-14 Score=146.90 Aligned_cols=222 Identities=19% Similarity=0.322 Sum_probs=160.4
Q ss_pred ceEEEEeecCCCccCCCCCCCCCEEEEEeCC-----ceeeeccCCCCCCcccceeEEEeccCCCCCccceEEEEEeeCCC
Q 001696 2 KLVVEVVDAYDLMPKDGEGSASPFAEVDFLN-----QLSKTKTIPKNLNPVWNQKLLFDFDQTKSHNHLRIEVSIYHHER 76 (1026)
Q Consensus 2 ~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~-----~~~~T~~~~~t~nP~Wne~f~f~~~~~~~~~~~~L~~~V~d~d~ 76 (1026)
++.+++..|++|.+++.++..|||++..+.. .+.+|++..+++||.|||+-.+.....+......+.+.|.|.+.
T Consensus 94 ~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~n~lN~~w~etev~~~i~~~~~~~K~~Rk~vcdn~~ 173 (362)
T KOG1013|consen 94 MLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTRNTLNPEWNETEVYEGITDDDTHLKVLRKVVCDNDK 173 (362)
T ss_pred hcceeechhcccchhhhhhhcchHHhhhcccchhhhhhhhHHhhccCcCcceeccceecccccchhhhhhhheeeccCcc
Confidence 5789999999999999999999999999832 56889999999999999998877544444444567888888333
Q ss_pred CCCCCCccceeEEecCccccccCCceeEEeeccccccccccccccceeEEecCCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q 001696 77 RPIPGRHFLGRVRIPCSNLVRKGEEVYQRFPLEKKWFLSSVKGEVGLKIYISPQSETTQPPTSSLPKPKSPKNTTNLDSK 156 (1026)
Q Consensus 77 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (1026)
....++.|+..+++..+..... +.. .+.|+. ..++..
T Consensus 174 --~~~~~sqGq~r~~lkKl~p~q~---------k~f-------~~cl~~----~lp~~r--------------------- 210 (362)
T KOG1013|consen 174 --KTHNESQGQSRVSLKKLKPLQR---------KSF-------NICLEK----SLPSER--------------------- 210 (362)
T ss_pred --cccccCcccchhhhhccChhhc---------chh-------hhhhhc----cCCccc---------------------
Confidence 4578899999999877764421 000 000000 000000
Q ss_pred ccCCCcchhhccccCCCCCCCccccccccccccccCCcCCCCcchhhhcccccccCCCCCCCCCCCCCCccccccCcCCC
Q 001696 157 TFTALPKVEELAAVDAPKSLPEEEISRISLKEDIKEPAKVTVEPIQEFLKQQVVLQPGQSVEKQPQGVPFTMHSMNLQQG 236 (1026)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (1026)
. ++.+
T Consensus 211 -----------------------------a-d~~~--------------------------------------------- 215 (362)
T KOG1013|consen 211 -----------------------------A-DRDE--------------------------------------------- 215 (362)
T ss_pred -----------------------------c-cccc---------------------------------------------
Confidence 0 0000
Q ss_pred CCCCcccCcccCCCCCCCCCCCCCCCCCCCcccccceeEeeeccccceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC
Q 001696 237 RPGDQEEYNLKDTNPQLGERWPNGGGYGGRGWMSGERFTSTYDLVEQMSYLYVRVVKAKDLPPSSITGSCDPYVEVKMGN 316 (1026)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~y~~~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~ 316 (1026)
+ ...| ...+++.|.. ....|.|++++|..|..+|.+|-+||||.+++..
T Consensus 216 -------~------E~rg----------------~i~isl~~~s--~~~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~p 264 (362)
T KOG1013|consen 216 -------D------EERG----------------AILISLAYSS--TTPGLIVTIIRCSHLASSDSNGYSDPYVSQRLSP 264 (362)
T ss_pred -------h------hhcc----------------ceeeeeccCc--CCCceEEEEEEeeeeeccccCCCCCccceeecCC
Confidence 0 0000 0134455544 4467899999999999999999999999999875
Q ss_pred -----eeeEeeeecCCCCCeEeEEEEEEec--CCCCCeEEEEEEeCCCCCCCceeEEEEEEcc
Q 001696 317 -----YKGRTKHFEKRMNPEWNQVFAFSKE--RIQSSMLEVFLKDKEMVGRDDYLGRVAFDLN 372 (1026)
Q Consensus 317 -----~~~kT~~~~~t~nP~wne~f~f~v~--~~~~~~L~v~V~d~~~~~~d~~lG~~~i~l~ 372 (1026)
.+++|.+.+++.||.||+.|.|.+. ++....+.|.|||++..+..+++|-+...+.
T Consensus 265 dv~~~fkkKt~~~K~t~~p~fd~~~~~~i~pgdLa~~kv~lsvgd~~~G~s~d~~GG~~~g~~ 327 (362)
T KOG1013|consen 265 DVGKKFKKKTQQKKKTLNPEFDEEFFYDIGPGDLAYKKVALSVGDYDIGKSNDSIGGSMLGGY 327 (362)
T ss_pred CcchhhcccCcchhccCCccccccccccCCccchhcceEEEeecccCCCcCccCCCccccccc
Confidence 2678999999999999999999874 4457899999999999889999998766544
No 193
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.47 E-value=3.4e-13 Score=127.97 Aligned_cols=89 Identities=22% Similarity=0.353 Sum_probs=81.1
Q ss_pred EEEEEEEeEecCCCCCCCCCCcEEEEEECCeE--EEeeeecCCCCCCcccceeEEEeeCCCcCeEEEEEEEccCCCCCce
Q 001696 450 LRVNVIEAQDIVPNDRNRLPEGFVKVQVGNQV--LKTKICPTPTTNPLWNEDLVFVAAEPFEEQLFLTVEDRVHASKDEV 527 (1026)
Q Consensus 450 l~V~I~~a~~L~~~d~~~~~dpyV~v~lg~~~--~kT~~~~~~t~nP~wne~f~f~v~~~~~~~L~i~V~d~d~~~~d~~ 527 (1026)
|+|.|++|++|+..+..+.+||||+++++++. .+|+++ +++.||.|||.|.|.+..+....|.|+|||++..++|++
T Consensus 2 lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~~kT~~v-~~t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~~~~dd~ 80 (124)
T cd04037 2 VRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYI-PNTLNPVFGKMFELEATLPGNSILKISVMDYDLLGSDDL 80 (124)
T ss_pred EEEEEEECcCCCCCCCCCCCCcEEEEEECCeeccceeeEE-ECCCCCccceEEEEEecCCCCCEEEEEEEECCCCCCCce
Confidence 79999999999999988999999999998865 577777 689999999999999877777899999999999899999
Q ss_pred eEEEEEeCcccc
Q 001696 528 LGKISLPLHIFE 539 (1026)
Q Consensus 528 lG~~~i~l~~l~ 539 (1026)
||++.+++.+..
T Consensus 81 iG~~~i~l~~~~ 92 (124)
T cd04037 81 IGETVIDLEDRF 92 (124)
T ss_pred eEEEEEeecccc
Confidence 999999998754
No 194
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=99.46 E-value=2.8e-13 Score=128.11 Aligned_cols=97 Identities=19% Similarity=0.261 Sum_probs=83.1
Q ss_pred EEEEecCCCCCccCCCCCCcCcEEEEEECCE-------EEEeeeecCCCCceeecEEEEEeeC-CCCEEEEEEEeCCC--
Q 001696 617 GILGAQGLLPMKMKDGRGSTDAYCIAKYGQK-------WVRTRTILDTFNPKWNEQYTWEVYD-PCTVITLGVFDNCH-- 686 (1026)
Q Consensus 617 ~v~~a~~L~~~~~~~~~~~~dpyv~v~~g~~-------~~~T~~~~~t~~P~wne~~~~~v~~-~~~~l~i~v~d~~~-- 686 (1026)
..++|++|+.. +..|.+||||+|++++. .+||++++++.||.|||.|.|.+.. ....|.|+|||++.
T Consensus 5 ~~i~a~~L~~~---d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~ 81 (120)
T cd04048 5 LSISCRNLLDK---DVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKS 81 (120)
T ss_pred EEEEccCCCCC---CCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEecCCc
Confidence 34699999987 66789999999999543 4999999999999999999998764 56689999999996
Q ss_pred --CCCCCccCCCCCCCCCeeEEEEEEcccccCCceEeeeEeee
Q 001696 687 --LGGGEKQNGSSAVRDSRIGKVRIRLSTLEAHRIYTHSYPLL 727 (1026)
Q Consensus 687 --~~~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~ 727 (1026)
.+ ++++||.+.+++++|..+.....|++|.
T Consensus 82 ~~~~-----------~~d~iG~~~i~l~~l~~~~~~~~~~~l~ 113 (120)
T cd04048 82 KDLS-----------DHDFLGEAECTLGEIVSSPGQKLTLPLK 113 (120)
T ss_pred CCCC-----------CCcEEEEEEEEHHHHhcCCCcEEEEEcc
Confidence 43 7999999999999998777668899984
No 195
>PLN03008 Phospholipase D delta
Probab=99.45 E-value=5.5e-13 Score=156.46 Aligned_cols=126 Identities=21% Similarity=0.389 Sum_probs=107.1
Q ss_pred eeEEEEEEEEeecCCCCCC------------------------------------------CCCCCcEEEEEECCe-eeE
Q 001696 284 MSYLYVRVVKAKDLPPSSI------------------------------------------TGSCDPYVEVKMGNY-KGR 320 (1026)
Q Consensus 284 ~~~L~V~v~~a~~L~~~d~------------------------------------------~g~~dpyv~v~~~~~-~~k 320 (1026)
.|.|.|+|.+|++|+.+|. .+++||||+|.++++ ..|
T Consensus 13 hg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tSDPYV~I~Lg~~rv~R 92 (868)
T PLN03008 13 HGDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIRSHRKVITSDPYVTVVVPQATLAR 92 (868)
T ss_pred ecccEEEEEEcccCCchhHHHHHHHhhcccccccccccccccccccccccccccccccccccCCCCceEEEEECCcceee
Confidence 4889999999999985321 246799999999886 569
Q ss_pred eeeecCCCCCeEeEEEEEEecCCCCCeEEEEEEeCCCCCCCceeEEEEEEccccCCCCCCCCCCCCEEEEeecCCCCC-c
Q 001696 321 TKHFEKRMNPEWNQVFAFSKERIQSSMLEVFLKDKEMVGRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLEDRRGEG-K 399 (1026)
Q Consensus 321 T~~~~~t~nP~wne~f~f~v~~~~~~~L~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~-~ 399 (1026)
|++++++.||+|||+|.|.+.++ ...|.|+|||++.++ +++||++.|++.++..+...+ .|++|.+..+.. +
T Consensus 93 TrVi~n~~NPvWNE~F~f~vah~-~s~L~f~VkD~D~~g-aD~IG~a~IPL~~L~~Ge~vd-----~Wl~Ll~~~~kp~k 165 (868)
T PLN03008 93 TRVLKNSQEPLWDEKFNISIAHP-FAYLEFQVKDDDVFG-AQIIGTAKIPVRDIASGERIS-----GWFPVLGASGKPPK 165 (868)
T ss_pred EEeCCCCCCCCcceeEEEEecCC-CceEEEEEEcCCccC-CceeEEEEEEHHHcCCCCceE-----EEEEccccCCCCCC
Confidence 99999999999999999999886 468999999999995 689999999999999887655 999999887642 3
Q ss_pred ccceEEEEEEecccCch
Q 001696 400 VRGQTMLAIWMGTQADE 416 (1026)
Q Consensus 400 ~~G~i~l~~~~~~~~d~ 416 (1026)
..|+|++++.|.+....
T Consensus 166 ~~~kl~v~lqf~pv~~~ 182 (868)
T PLN03008 166 AETAIFIDMKFTPFDQI 182 (868)
T ss_pred CCcEEEEEEEEEEcccc
Confidence 45899999999887653
No 196
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=99.45 E-value=5.6e-13 Score=126.04 Aligned_cols=98 Identities=19% Similarity=0.315 Sum_probs=84.3
Q ss_pred EEEeecCCCCCCCCCCCcEEEEEECCe-------eeEeeeecCCCCCeEeEEEEEEecCCCCCeEEEEEEeCCC----CC
Q 001696 291 VVKAKDLPPSSITGSCDPYVEVKMGNY-------KGRTKHFEKRMNPEWNQVFAFSKERIQSSMLEVFLKDKEM----VG 359 (1026)
Q Consensus 291 v~~a~~L~~~d~~g~~dpyv~v~~~~~-------~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~v~V~d~~~----~~ 359 (1026)
.++|++|+..+..|.+||||+|.+.+. .++|++++++.||+|||+|.|.+.......|.|+|||++. .+
T Consensus 6 ~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~~~~~ 85 (120)
T cd04048 6 SISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKSKDLS 85 (120)
T ss_pred EEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEecCCcCCCC
Confidence 478999999998899999999999764 3899999999999999999998654445689999999997 78
Q ss_pred CCceeEEEEEEccccCCCCCCCCCCCCEEEEeec
Q 001696 360 RDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLED 393 (1026)
Q Consensus 360 ~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~ 393 (1026)
++++||++.+++.++....... .|+.|..
T Consensus 86 ~~d~iG~~~i~l~~l~~~~~~~-----~~~~l~~ 114 (120)
T cd04048 86 DHDFLGEAECTLGEIVSSPGQK-----LTLPLKG 114 (120)
T ss_pred CCcEEEEEEEEHHHHhcCCCcE-----EEEEccC
Confidence 9999999999999998765433 7888844
No 197
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=99.44 E-value=4.2e-13 Score=122.42 Aligned_cols=81 Identities=17% Similarity=0.275 Sum_probs=67.8
Q ss_pred eEEEEeecCCCccCCCCCCCCCEEEEEeCC-----ceeeeccCCCCCCcccceeEEEeccCCCCCccceEEEEEeeCCC-
Q 001696 3 LVVEVVDAYDLMPKDGEGSASPFAEVDFLN-----QLSKTKTIPKNLNPVWNQKLLFDFDQTKSHNHLRIEVSIYHHER- 76 (1026)
Q Consensus 3 L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~-----~~~~T~~~~~t~nP~Wne~f~f~~~~~~~~~~~~L~~~V~d~d~- 76 (1026)
|.|+|++|+||+ +.+||||++.++. .+.+|+++++|+||+|||+|.|.+.. . ..|.+.|||++.
T Consensus 1 L~V~V~~A~~L~-----~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~~-s----~~L~~~v~d~~~~ 70 (118)
T cd08686 1 LNVIVHSAQGFK-----QSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELEG-S----QTLRILCYEKCYS 70 (118)
T ss_pred CEEEEEeCCCCC-----CCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeCC-C----CEEEEEEEEcccc
Confidence 789999999994 5699999999953 46899999999999999999999874 2 599999999631
Q ss_pred ----CCCCCCccceeEEecCc
Q 001696 77 ----RPIPGRHFLGRVRIPCS 93 (1026)
Q Consensus 77 ----~~~~~d~~lG~~~i~l~ 93 (1026)
...+.|+++|++.+.|+
T Consensus 71 ~~~~d~~~~d~~~G~g~i~Ld 91 (118)
T cd08686 71 KVKLDGEGTDAIMGKGQIQLD 91 (118)
T ss_pred cccccccCcccEEEEEEEEEC
Confidence 12357899988888876
No 198
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=99.42 E-value=1.9e-12 Score=118.13 Aligned_cols=87 Identities=29% Similarity=0.481 Sum_probs=66.9
Q ss_pred EEEEEEEecCCCCCccCCCCCCcCcEEEEEECC-----EEEEeeeecCCCCceeecEEEEEeeCCCCEEEEEEEeCCCCC
Q 001696 614 LEVGILGAQGLLPMKMKDGRGSTDAYCIAKYGQ-----KWVRTRTILDTFNPKWNEQYTWEVYDPCTVITLGVFDNCHLG 688 (1026)
Q Consensus 614 L~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~g~-----~~~~T~~~~~t~~P~wne~~~~~v~~~~~~l~i~v~d~~~~~ 688 (1026)
|.|.|++|+||+. .+||||++.+++ ..+||+++++|+||+|||.|.|.+.. ...|.+.|||++.-.
T Consensus 1 L~V~V~~A~~L~~--------~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~~-s~~L~~~v~d~~~~~ 71 (118)
T cd08686 1 LNVIVHSAQGFKQ--------SANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELEG-SQTLRILCYEKCYSK 71 (118)
T ss_pred CEEEEEeCCCCCC--------CCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeCC-CCEEEEEEEEccccc
Confidence 5799999999953 589999998852 46999999999999999999999864 668999999984100
Q ss_pred CCCccCCCCCCCCCeeEEEEEEccc
Q 001696 689 GGEKQNGSSAVRDSRIGKVRIRLST 713 (1026)
Q Consensus 689 ~~~~~~~~~~~~~~~lG~~~i~l~~ 713 (1026)
.+. -..++|+++|++.|.|..
T Consensus 72 --~~~--d~~~~d~~~G~g~i~Ld~ 92 (118)
T cd08686 72 --VKL--DGEGTDAIMGKGQIQLDP 92 (118)
T ss_pred --ccc--cccCcccEEEEEEEEECH
Confidence 000 002379999877777654
No 199
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=99.36 E-value=4.2e-12 Score=118.17 Aligned_cols=94 Identities=22% Similarity=0.272 Sum_probs=76.8
Q ss_pred EEEEEecCCCCCccCCCCCCcCcEEEEEECC------EEEEeeeecCCCCceeecEEEEEeeC-----CCCEEEEEEEeC
Q 001696 616 VGILGAQGLLPMKMKDGRGSTDAYCIAKYGQ------KWVRTRTILDTFNPKWNEQYTWEVYD-----PCTVITLGVFDN 684 (1026)
Q Consensus 616 v~v~~a~~L~~~~~~~~~~~~dpyv~v~~g~------~~~~T~~~~~t~~P~wne~~~~~v~~-----~~~~l~i~v~d~ 684 (1026)
+..++|++|+.+ +..|.+||||+|++.+ ..++|+++++++||.|| .|.|++.. +...|.|+|||+
T Consensus 4 ~~~i~a~~L~~~---d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~ 79 (110)
T cd04047 4 ELQFSGKKLDKK---DFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDY 79 (110)
T ss_pred EEEEEeCCCCCC---CCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEe
Confidence 344599999987 6678999999998843 25999999999999999 78887643 256899999999
Q ss_pred CCCCCCCccCCCCCCCCCeeEEEEEEcccccCCceEeeeEee
Q 001696 685 CHLGGGEKQNGSSAVRDSRIGKVRIRLSTLEAHRIYTHSYPL 726 (1026)
Q Consensus 685 ~~~~~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L 726 (1026)
+.++ +|++||++.++|++|..+. .+++.+
T Consensus 80 d~~~-----------~d~~iG~~~~~l~~l~~~~--~~~~~~ 108 (110)
T cd04047 80 DSSG-----------KHDLIGEFETTLDELLKSS--PLEFEL 108 (110)
T ss_pred CCCC-----------CCcEEEEEEEEHHHHhcCC--CceEEe
Confidence 9865 7999999999999998654 445544
No 200
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=99.34 E-value=6.9e-12 Score=116.70 Aligned_cols=88 Identities=20% Similarity=0.399 Sum_probs=76.2
Q ss_pred EEEEEeecCCCCCCCCCCCcEEEEEECCe------eeEeeeecCCCCCeEeEEEEEEecCCC----CCeEEEEEEeCCCC
Q 001696 289 VRVVKAKDLPPSSITGSCDPYVEVKMGNY------KGRTKHFEKRMNPEWNQVFAFSKERIQ----SSMLEVFLKDKEMV 358 (1026)
Q Consensus 289 V~v~~a~~L~~~d~~g~~dpyv~v~~~~~------~~kT~~~~~t~nP~wne~f~f~v~~~~----~~~L~v~V~d~~~~ 358 (1026)
+-.++|++|+..+..|.+||||+|++.+. .++|++++++.||+|| +|.|.+.... ...|.|+|||++..
T Consensus 4 ~~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~~ 82 (110)
T cd04047 4 ELQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDSS 82 (110)
T ss_pred EEEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCCC
Confidence 34568999999999999999999998653 5899999999999999 7888764332 57999999999999
Q ss_pred CCCceeEEEEEEccccCCC
Q 001696 359 GRDDYLGRVAFDLNEVPTR 377 (1026)
Q Consensus 359 ~~d~~lG~~~i~l~~l~~~ 377 (1026)
++|++||++.+++.++...
T Consensus 83 ~~d~~iG~~~~~l~~l~~~ 101 (110)
T cd04047 83 GKHDLIGEFETTLDELLKS 101 (110)
T ss_pred CCCcEEEEEEEEHHHHhcC
Confidence 9999999999999999854
No 201
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.32 E-value=2.3e-12 Score=141.98 Aligned_cols=123 Identities=28% Similarity=0.532 Sum_probs=107.8
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeEeeeecCCCCCeEeEEEEEEecCCCCCeEEEEEEeCCC-------
Q 001696 285 SYLYVRVVKAKDLPPSSITGSCDPYVEVKMGNYKGRTKHFEKRMNPEWNQVFAFSKERIQSSMLEVFLKDKEM------- 357 (1026)
Q Consensus 285 ~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~v~V~d~~~------- 357 (1026)
..++++|++|.+|..+|..|++||||.+.++..+.+|+++...+||+|||.|.|.+.+. .+.|.+.|||.+.
T Consensus 295 akitltvlcaqgl~akdktg~sdpyvt~qv~ktkrrtrti~~~lnpvw~ekfhfechns-tdrikvrvwded~dlksklr 373 (1283)
T KOG1011|consen 295 AKITLTVLCAQGLIAKDKTGKSDPYVTAQVGKTKRRTRTIHQELNPVWNEKFHFECHNS-TDRIKVRVWDEDNDLKSKLR 373 (1283)
T ss_pred eeeEEeeeecccceecccCCCCCCcEEEeecccchhhHhhhhccchhhhhheeeeecCC-CceeEEEEecCcccHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999776 5799999999874
Q ss_pred ----CCCCceeEEEEEEccccCCCCCCCCCCCCEEEEeecCCCCCcccceEEEEEEecccCc
Q 001696 358 ----VGRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLEDRRGEGKVRGQTMLAIWMGTQAD 415 (1026)
Q Consensus 358 ----~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~~~d 415 (1026)
-.+|+|+|+..|.+..+.... ..||.|+.....+.+.|.|++.+.....++
T Consensus 374 qkl~resddflgqtvievrtlsgem-------dvwynlekrtdksavsgairlhisveikge 428 (1283)
T KOG1011|consen 374 QKLTRESDDFLGQTVIEVRTLSGEM-------DVWYNLEKRTDKSAVSGAIRLHISVEIKGE 428 (1283)
T ss_pred HHhhhcccccccceeEEEEecccch-------hhhcchhhccchhhccceEEEEEEEEEcCc
Confidence 247899999999988876542 389999998877779999998887665544
No 202
>PF06398 Pex24p: Integral peroxisomal membrane peroxin; InterPro: IPR010482 Peroxisomes play diverse roles in the cell, compartmentalising many activities related to lipid metabolism and functioning in the decomposition of toxic hydrogen peroxide. Sequence similarity was identified between two hypothetical proteins and the peroxin integral membrane protein Pex24p [].
Probab=99.32 E-value=2.5e-11 Score=137.78 Aligned_cols=178 Identities=24% Similarity=0.355 Sum_probs=122.6
Q ss_pred ccchhhhHHHHHHHHHHHHhHHHHH---HHhhccccccCchhHHHHHHHHHHHHHhccch---HHHHHHHHHHHHhhccc
Q 001696 814 MWSMRRSKANFFRVMSLLSGMISVS---RWFTDICNWRNPVTAVLVHILFLILIWYPELI---LPTVFLYMFLIGLWNYR 887 (1026)
Q Consensus 814 ~~s~~~~~~n~~Rl~~~~~~~~~~~---~~i~~~~~W~~p~~s~~~~~~~~~~~~~p~l~---lp~~~l~l~~~~~~~~~ 887 (1026)
.+|+..+..|+.||...+..++.++ +.+.++++|++|..|+.++++|+++|++|.+. +|++++.+ .+++..|.
T Consensus 2 ~lS~~ll~~n~~~l~~~l~~~f~~~~~~d~vl~il~W~~p~~t~~~L~l~t~~~l~p~l~l~~lp~~~ll~-~il~~~yl 80 (359)
T PF06398_consen 2 PLSSPLLSSNFPRLSSRLGPIFPFQLILDRVLRILTWTNPDYTLSFLLLYTFLCLNPYLLLLSLPLGLLLF-GILLPSYL 80 (359)
T ss_pred CcChHHHHhChHHHHHHHHHhhHHHHHHHHHHHeEEeCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 4788999999999999999999999 99999999999999999999999999999873 34444333 33344444
Q ss_pred cC-CCCCCCCCCCccccccCCCCCCCcccCCCCCCCChhHHHHHHHHHHHHHhhHHHHHHHHHhhhHhHhh----hcccc
Q 001696 888 FR-PRHPPHMDTKLSWAEAVHPDELDEEFDTFPTSKTHDIVRIRYDRLRSVAGRIQTVVGDIATQGERFQS----LLSWR 962 (1026)
Q Consensus 888 ~~-~~~p~~~~~~~~~~~~~~~~e~~~e~~~~~~~~~~~~~~~r~~~l~~~~~~vQ~~l~~~a~~le~~~~----l~~w~ 962 (1026)
.+ |...+.... .. .+.+.+.+..|+-.+. -..+..+++.+||.|+.+.+.++.+.. +++|+
T Consensus 81 ~~~p~~~~~~~~----~~----~~~~~~~~~~ptl~~~------s~e~~~nL~dlQn~m~~~~~~~d~~~~~~~~~~~f~ 146 (359)
T PF06398_consen 81 YRHPSPTSSLPK----SY----EDHNPEPSEGPTLDKP------SREIVMNLRDLQNKMEDLSDPYDFLSSFLYPYLNFS 146 (359)
T ss_pred eecCCCcccccc----cc----cccCCCcCCCCCcchh------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCC
Confidence 33 221111110 00 0000011100111100 124566677899999999999999885 45799
Q ss_pred CchhHHHHHHHHHHHHHHH----hhhhhHHHHHHHhhh-hhcCCCCCCC
Q 001696 963 DPRATALFILFSLCAAMVL----YTTPFKVVALLAGLY-YLRHPRFRSK 1006 (1026)
Q Consensus 963 ~p~~t~~~~~~l~~~~i~l----~~iP~r~i~l~~g~~-~~r~P~~~~~ 1006 (1026)
++..|.+++++|+++.+.+ .+||+|++++++|.. .+.||..++.
T Consensus 147 ~e~~s~~~f~~l~~~~~~~~l~~~~ip~r~~ll~~g~~~l~~Hp~~~~~ 195 (359)
T PF06398_consen 147 DENLSSLIFLLLLLSPILLLLLSPFIPWRFVLLVSGAFVLLYHPPWRQA 195 (359)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHhhcCCcHHHH
Confidence 9999998887777655543 468999999999844 5689977643
No 203
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=99.30 E-value=4.7e-13 Score=149.55 Aligned_cols=128 Identities=30% Similarity=0.526 Sum_probs=106.9
Q ss_pred eEEEEeecCCCccCCCCCCCCCEEEEEeC--------------------------C-----ceeeeccCCCCCCccccee
Q 001696 3 LVVEVVDAYDLMPKDGEGSASPFAEVDFL--------------------------N-----QLSKTKTIPKNLNPVWNQK 51 (1026)
Q Consensus 3 L~V~v~~a~~L~~~~~~g~~dpyv~v~~~--------------------------~-----~~~~T~~~~~t~nP~Wne~ 51 (1026)
|.|.+.+|+||..+|.+|.+|||+.+.+- + -.+-|.++++|+||.|+|.
T Consensus 116 l~is~~~ak~l~akd~ngfSdP~~m~g~~p~~~~~~~pra~~eqrdgl~~~~~~~GpiPAKlIkatsvk~~TLnPkW~Ek 195 (1103)
T KOG1328|consen 116 LNISLLEAKDLIAKDVNGFSDPFAMMGVVPGTRKENSPRALHEQRDGLMHRFQDTGPIPAKLIKATSVKKKTLNPKWSEK 195 (1103)
T ss_pred HHHHHHHhcCccccCCCCCCChhhhhccccccccccChhhhhhhhhhhhhccccCCCCcHHHhhhcccccccCCcchhhh
Confidence 34567889999999999999999998871 0 1234788999999999999
Q ss_pred EEEeccCCCCCccceEEEEEeeCCCCC----------------------------------CCCCccceeEEecCccccc
Q 001696 52 LLFDFDQTKSHNHLRIEVSIYHHERRP----------------------------------IPGRHFLGRVRIPCSNLVR 97 (1026)
Q Consensus 52 f~f~~~~~~~~~~~~L~~~V~d~d~~~----------------------------------~~~d~~lG~~~i~l~~l~~ 97 (1026)
|.|.+.+... .++.+.|||+|+.. ...|||||++.|||.++..
T Consensus 196 F~F~IeDv~t---DqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDDFLGciNipl~EiP~ 272 (1103)
T KOG1328|consen 196 FQFTIEDVQT---DQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDDFLGCINIPLAEIPP 272 (1103)
T ss_pred eeeehhcccc---ceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCccccccccccccchhcCCc
Confidence 9999987664 78999999977641 1138999999999999998
Q ss_pred cCCceeEEeeccccccccccccccceeEEecCCCCCCC
Q 001696 98 KGEEVYQRFPLEKKWFLSSVKGEVGLKIYISPQSETTQ 135 (1026)
Q Consensus 98 ~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~~~~~~~ 135 (1026)
.+ .++||.|++++..++++|.+++++++....+..+
T Consensus 273 ~G--ld~WFkLepRS~~S~VqG~~~LklwLsT~e~~~a 308 (1103)
T KOG1328|consen 273 DG--LDQWFKLEPRSDKSKVQGQVKLKLWLSTKEEGRA 308 (1103)
T ss_pred ch--HHHHhccCcccccccccceEEEEEEEeeeccccc
Confidence 76 7999999999999999999999999987655543
No 204
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=99.30 E-value=1.2e-11 Score=108.99 Aligned_cols=82 Identities=33% Similarity=0.546 Sum_probs=75.2
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECC---eeeEeeeecCCCCCeEeEEEEEEecCCCCCeEEEEEEeCCCCCCCce
Q 001696 287 LYVRVVKAKDLPPSSITGSCDPYVEVKMGN---YKGRTKHFEKRMNPEWNQVFAFSKERIQSSMLEVFLKDKEMVGRDDY 363 (1026)
Q Consensus 287 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~---~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~v~V~d~~~~~~d~~ 363 (1026)
|+|+|++|+||+..+..+.+||||++.+++ ...+|++++++.+|.|||+|.|.+.......|.|+|||++..++|++
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~~~~~~~ 80 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLDDPDLDSLSFEVWDKDSFGKDEL 80 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEESHGCGTEEEEEEEEETSSSSEEE
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeeccccceeeeeeeeeeecccccceEEEEEECCCCCCCCE
Confidence 689999999999988888999999999988 57999999999999999999999876666779999999999988999
Q ss_pred eEEEE
Q 001696 364 LGRVA 368 (1026)
Q Consensus 364 lG~~~ 368 (1026)
||++.
T Consensus 81 iG~~~ 85 (85)
T PF00168_consen 81 IGEVK 85 (85)
T ss_dssp EEEEE
T ss_pred EEEEC
Confidence 99974
No 205
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.28 E-value=1e-11 Score=159.64 Aligned_cols=117 Identities=20% Similarity=0.342 Sum_probs=98.7
Q ss_pred ceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-eeEeeeecCCCCCeEeEEEEEEecCCC-CCeEEEEEEeCCCCCC
Q 001696 283 QMSYLYVRVVKAKDLPPSSITGSCDPYVEVKMGNY-KGRTKHFEKRMNPEWNQVFAFSKERIQ-SSMLEVFLKDKEMVGR 360 (1026)
Q Consensus 283 ~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~-~~kT~~~~~t~nP~wne~f~f~v~~~~-~~~L~v~V~d~~~~~~ 360 (1026)
-.|.|.|+|++|+||. +..|.+||||++.++++ +.||++++++.||+|||+|.|.++++. +..|.|+|||+|.+++
T Consensus 1978 ~~G~L~V~V~~a~nl~--~~~~~sdPyv~l~~g~~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d~f~k 2055 (2102)
T PLN03200 1978 LPGSLTVTIKRGNNLK--QSMGNTNAFCKLTLGNGPPRQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKNTFGK 2055 (2102)
T ss_pred CCcceEEEEeeccccc--cccCCCCCeEEEEECCCCcccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecCccCC
Confidence 3589999999999998 44688999999999965 889999999999999999999988764 4679999999999955
Q ss_pred CceeEEEEEEccccCCCCCCCCCCCCEEEEeecCCCCCcccce---EEEEEEe
Q 001696 361 DDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLEDRRGEGKVRGQ---TMLAIWM 410 (1026)
Q Consensus 361 d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~---i~l~~~~ 410 (1026)
+.||.+.|++.++..+.... .||+|.+.. +..|+ |.+.+.+
T Consensus 2056 -d~~G~~~i~l~~vv~~~~~~-----~~~~L~~~~---~k~G~~~~~~~e~~w 2099 (2102)
T PLN03200 2056 -SSLGKVTIQIDRVVMEGTYS-----GEYSLNPES---NKDGSSRTLEIEFQW 2099 (2102)
T ss_pred -CCCceEEEEHHHHhcCceee-----eeeecCccc---ccCCCcceEEEEEEe
Confidence 59999999999998776555 899999632 23577 8877643
No 206
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=99.25 E-value=2.5e-11 Score=107.03 Aligned_cols=82 Identities=33% Similarity=0.568 Sum_probs=75.1
Q ss_pred EEEEEEEeEecCCCCCCCCCCcEEEEEECC---eEEEeeeecCCCCCCcccceeEEEeeCCCcCeEEEEEEEccCCCCCc
Q 001696 450 LRVNVIEAQDIVPNDRNRLPEGFVKVQVGN---QVLKTKICPTPTTNPLWNEDLVFVAAEPFEEQLFLTVEDRVHASKDE 526 (1026)
Q Consensus 450 l~V~I~~a~~L~~~d~~~~~dpyV~v~lg~---~~~kT~~~~~~t~nP~wne~f~f~v~~~~~~~L~i~V~d~d~~~~d~ 526 (1026)
|+|+|++|+||+..+..+.+||||++.+++ ..++|+++ +++.+|.|||.|.|.+..+....|.|+|||++..++|+
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~-~~~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~~~~~~ 79 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVK-KNTSNPVWNEEFEFPLDDPDLDSLSFEVWDKDSFGKDE 79 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCB-SSBSSEEEEEEEEEEESHGCGTEEEEEEEEETSSSSEE
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeee-eccccceeeeeeeeeeecccccceEEEEEECCCCCCCC
Confidence 689999999999988888999999999976 67999999 78999999999999988777778999999999988899
Q ss_pred eeEEEE
Q 001696 527 VLGKIS 532 (1026)
Q Consensus 527 ~lG~~~ 532 (1026)
+||++.
T Consensus 80 ~iG~~~ 85 (85)
T PF00168_consen 80 LIGEVK 85 (85)
T ss_dssp EEEEEE
T ss_pred EEEEEC
Confidence 999974
No 207
>PLN02270 phospholipase D alpha
Probab=99.23 E-value=7e-11 Score=139.21 Aligned_cols=126 Identities=18% Similarity=0.257 Sum_probs=106.7
Q ss_pred eEEEEEEEEecCCCCCcc---------------CCCCCCcCcEEEEEECCEE-EEeeeecCC-CCceeecEEEEEeeCCC
Q 001696 612 GILEVGILGAQGLLPMKM---------------KDGRGSTDAYCIAKYGQKW-VRTRTILDT-FNPKWNEQYTWEVYDPC 674 (1026)
Q Consensus 612 g~L~v~v~~a~~L~~~~~---------------~~~~~~~dpyv~v~~g~~~-~~T~~~~~t-~~P~wne~~~~~v~~~~ 674 (1026)
|.|.++|++|++|++++. ..+.+.+||||.|.+++.+ .||+++.+. .||+|||.|.+++..+.
T Consensus 8 g~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i~~ah~~ 87 (808)
T PLN02270 8 GTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHIYCAHMA 87 (808)
T ss_pred cceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEEEEEeecCCCCCCCccccceEEeeccCc
Confidence 899999999999987410 1234678999999998766 799999885 69999999999999999
Q ss_pred CEEEEEEEeCCCCCCCCccCCCCCCCCCeeEEEEEEcccccCCceEeeeEeeeecCCCCCccCcEEEEEEEEeec
Q 001696 675 TVITLGVFDNCHLGGGEKQNGSSAVRDSRIGKVRIRLSTLEAHRIYTHSYPLLVLHPHGVKKMGELQLAIRFTIF 749 (1026)
Q Consensus 675 ~~l~i~v~d~~~~~~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~~~ 749 (1026)
+.++|.|.|.+.++ ..+||++.||+.+|..|..+++|+++.....+-.+...+|+++++|.+.
T Consensus 88 ~~v~f~vkd~~~~g------------~~~ig~~~~p~~~~~~g~~i~~~~~~~~~~~~p~~~~~~~~~~~~f~~~ 150 (808)
T PLN02270 88 SNIIFTVKDDNPIG------------ATLIGRAYIPVEEILDGEEVDRWVEILDNDKNPIHGGSKIHVKLQYFEV 150 (808)
T ss_pred ceEEEEEecCCccC------------ceEEEEEEEEHHHhcCCCccccEEeccCCCCCcCCCCCEEEEEEEEEEc
Confidence 99999999999875 5699999999999999999999999986654333334589999999874
No 208
>PF11696 DUF3292: Protein of unknown function (DUF3292); InterPro: IPR021709 This eukaryotic family of proteins has no known function.
Probab=99.13 E-value=9.5e-10 Score=125.87 Aligned_cols=84 Identities=20% Similarity=0.504 Sum_probs=69.4
Q ss_pred cCCCCccchhhhHHHHHHHHH-HHHhHHHHHHHhhccccccCchhHHHHHHHHHHHHHhccchHHHHHHHHHHHHh----
Q 001696 809 DVDSHMWSMRRSKANFFRVMS-LLSGMISVSRWFTDICNWRNPVTAVLVHILFLILIWYPELILPTVFLYMFLIGL---- 883 (1026)
Q Consensus 809 ~~~~~~~s~~~~~~n~~Rl~~-~~~~~~~~~~~i~~~~~W~~p~~s~~~~~~~~~~~~~p~l~lp~~~l~l~~~~~---- 883 (1026)
.++...|+-.++++|+.||.. ++-.+..+.+.|.++.+|++|.+|.+++++|++ +|+.+|++|++++.++.+.+
T Consensus 82 ~a~~e~FspdkLRa~lERlY~tv~v~~~~~~khi~RLrSW~eprRT~~fc~vYf~-aW~~dll~p~~~~~L~~li~~P~~ 160 (642)
T PF11696_consen 82 IAEDEEFSPDKLRANLERLYMTVVVGLAAFIKHIARLRSWREPRRTAAFCAVYFI-AWLLDLLVPAFFAFLIALILSPPA 160 (642)
T ss_pred ccccccCChHHHHHHhHhheeehHHHHHHHHHHHHHhhhhcccchHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCccc
Confidence 356788999999999999998 778888999999999999999999999999998 67779989988877766655
Q ss_pred hccccCCCCC
Q 001696 884 WNYRFRPRHP 893 (1026)
Q Consensus 884 ~~~~~~~~~p 893 (1026)
+.++|-|..+
T Consensus 161 r~~lFPpap~ 170 (642)
T PF11696_consen 161 RSILFPPAPP 170 (642)
T ss_pred ccccCCCCCc
Confidence 3444444433
No 209
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.12 E-value=3.6e-10 Score=106.48 Aligned_cols=93 Identities=19% Similarity=0.258 Sum_probs=78.0
Q ss_pred EEEEEEEecCCCCCccCCCCC--CcCcEEEEEEC---CEEEEeeeecCCCC--ceeecEEEEEeeCC-------------
Q 001696 614 LEVGILGAQGLLPMKMKDGRG--STDAYCIAKYG---QKWVRTRTILDTFN--PKWNEQYTWEVYDP------------- 673 (1026)
Q Consensus 614 L~v~v~~a~~L~~~~~~~~~~--~~dpyv~v~~g---~~~~~T~~~~~t~~--P~wne~~~~~v~~~------------- 673 (1026)
|+|.|.+|+|++..+. +..| .+||||++.+. ..+.+|.++++++| |.||+.|.|++..+
T Consensus 2 LRViIw~~~~v~~~~~-~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~ 80 (133)
T cd08374 2 LRVIVWNTRDVLNDDT-NITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEH 80 (133)
T ss_pred EEEEEEECcCCccccc-ccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeecc
Confidence 7899999999776533 2344 49999999884 46799999999999 99999999988652
Q ss_pred -----------CCEEEEEEEeCCCCCCCCccCCCCCCCCCeeEEEEEEcccccCCc
Q 001696 674 -----------CTVITLGVFDNCHLGGGEKQNGSSAVRDSRIGKVRIRLSTLEAHR 718 (1026)
Q Consensus 674 -----------~~~l~i~v~d~~~~~~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~ 718 (1026)
...|+|+|||+|.++ .|++||.+.++|..+..+.
T Consensus 81 ~~~~~~~e~~~~~~L~lqvwD~D~~s-----------~dd~iG~~~l~l~~l~~~~ 125 (133)
T cd08374 81 FWSLDETEYKIPPKLTLQVWDNDKFS-----------PDDFLGSLELDLSILPRPA 125 (133)
T ss_pred ccccCcceEecCcEEEEEEEECcccC-----------CCCcceEEEEEhhhccccc
Confidence 346999999999876 7999999999999997765
No 210
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=99.12 E-value=3.5e-10 Score=102.75 Aligned_cols=99 Identities=30% Similarity=0.516 Sum_probs=85.4
Q ss_pred EEEEEEEecCCCCCccCCCCCCcCcEEEEEECC-EEEEeeeecCCCCceeecEEEEEeeC-CCCEEEEEEEeCCCCCCCC
Q 001696 614 LEVGILGAQGLLPMKMKDGRGSTDAYCIAKYGQ-KWVRTRTILDTFNPKWNEQYTWEVYD-PCTVITLGVFDNCHLGGGE 691 (1026)
Q Consensus 614 L~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~g~-~~~~T~~~~~t~~P~wne~~~~~v~~-~~~~l~i~v~d~~~~~~~~ 691 (1026)
|.|.|++|++|... ...+..||||++.+.+ ..++|+++.++.||.||+.|.|++.. ....|.|+|||.+..+
T Consensus 1 l~v~i~~~~~l~~~---~~~~~~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~~~--- 74 (102)
T cd00030 1 LRVTVIEARNLPAK---DLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKDRFS--- 74 (102)
T ss_pred CEEEEEeeeCCCCc---CCCCCCCcEEEEEeccCceEecceeCCCCCCcccceEEEEccCCCCCEEEEEEEecCCCC---
Confidence 46899999999875 4456899999999987 88999999999999999999999998 6778999999988643
Q ss_pred ccCCCCCCCCCeeEEEEEEccccc-CCceEeeeEee
Q 001696 692 KQNGSSAVRDSRIGKVRIRLSTLE-AHRIYTHSYPL 726 (1026)
Q Consensus 692 ~~~~~~~~~~~~lG~~~i~l~~l~-~~~~~~~~~~L 726 (1026)
.+.+||++.+++.++. .......|++|
T Consensus 75 --------~~~~ig~~~~~l~~l~~~~~~~~~~~~l 102 (102)
T cd00030 75 --------KDDFLGEVEIPLSELLDSGKEGELWLPL 102 (102)
T ss_pred --------CCceeEEEEEeHHHhhhcCCcCcceecC
Confidence 6899999999999998 55555777764
No 211
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=99.07 E-value=1e-09 Score=99.67 Aligned_cols=100 Identities=36% Similarity=0.638 Sum_probs=85.6
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECC-eeeEeeeecCCCCCeEeEEEEEEecCCCCCeEEEEEEeCCCCCCCceeE
Q 001696 287 LYVRVVKAKDLPPSSITGSCDPYVEVKMGN-YKGRTKHFEKRMNPEWNQVFAFSKERIQSSMLEVFLKDKEMVGRDDYLG 365 (1026)
Q Consensus 287 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~-~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~v~V~d~~~~~~d~~lG 365 (1026)
|.|+|++|++|......+.++|||.+.+.+ ...+|+++.++.||.|||.|.|.+.......|.|+||+.+..+.+.+||
T Consensus 1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~~~~~~~ig 80 (102)
T cd00030 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKDRFSKDDFLG 80 (102)
T ss_pred CEEEEEeeeCCCCcCCCCCCCcEEEEEeccCceEecceeCCCCCCcccceEEEEccCCCCCEEEEEEEecCCCCCCceeE
Confidence 468999999998766667899999999998 7899999999999999999999987644678999999999887899999
Q ss_pred EEEEEccccC-CCCCCCCCCCCEEEEe
Q 001696 366 RVAFDLNEVP-TRVPPDSPLAPQWYRL 391 (1026)
Q Consensus 366 ~~~i~l~~l~-~~~~~~~~~~~~w~~L 391 (1026)
.+.+++.++. ..... ..|++|
T Consensus 81 ~~~~~l~~l~~~~~~~-----~~~~~l 102 (102)
T cd00030 81 EVEIPLSELLDSGKEG-----ELWLPL 102 (102)
T ss_pred EEEEeHHHhhhcCCcC-----cceecC
Confidence 9999999987 33322 277764
No 212
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.07 E-value=9.3e-10 Score=103.69 Aligned_cols=92 Identities=26% Similarity=0.379 Sum_probs=78.7
Q ss_pred EEEEEEEeecCCCCC--CCC--CCCcEEEEEECC---eeeEeeeecCCCC--CeEeEEEEEEecC---------------
Q 001696 287 LYVRVVKAKDLPPSS--ITG--SCDPYVEVKMGN---YKGRTKHFEKRMN--PEWNQVFAFSKER--------------- 342 (1026)
Q Consensus 287 L~V~v~~a~~L~~~d--~~g--~~dpyv~v~~~~---~~~kT~~~~~t~n--P~wne~f~f~v~~--------------- 342 (1026)
|+|.|.+|++++..+ ..| .+||||++.+.+ .+++|.+.++++| |+||+.|.|++..
T Consensus 2 LRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~~ 81 (133)
T cd08374 2 LRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEHF 81 (133)
T ss_pred EEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeeccc
Confidence 799999999966543 356 499999999986 4689999999999 9999999988643
Q ss_pred --------CCCCeEEEEEEeCCCCCCCceeEEEEEEccccCCCC
Q 001696 343 --------IQSSMLEVFLKDKEMVGRDDYLGRVAFDLNEVPTRV 378 (1026)
Q Consensus 343 --------~~~~~L~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~ 378 (1026)
.....|.++|||.|.+++|++||++.++|..+....
T Consensus 82 ~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~~~~ 125 (133)
T cd08374 82 WSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSILPRPA 125 (133)
T ss_pred cccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhccccc
Confidence 235789999999999999999999999999887654
No 213
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=99.07 E-value=8.8e-10 Score=100.27 Aligned_cols=91 Identities=34% Similarity=0.566 Sum_probs=79.4
Q ss_pred EEEEEEEecCCCCCccCCCCCCcCcEEEEEECCE---EEEeeeecCCCCceeecEEEEEeeCC-CCEEEEEEEeCCCCCC
Q 001696 614 LEVGILGAQGLLPMKMKDGRGSTDAYCIAKYGQK---WVRTRTILDTFNPKWNEQYTWEVYDP-CTVITLGVFDNCHLGG 689 (1026)
Q Consensus 614 L~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~g~~---~~~T~~~~~t~~P~wne~~~~~v~~~-~~~l~i~v~d~~~~~~ 689 (1026)
|.|.|++|++|... ...+..+|||++++++. ..+|+++.++.||.|||.|.|.+..+ ...|.|+|||.+..+
T Consensus 2 l~i~i~~~~~l~~~---~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~~- 77 (101)
T smart00239 2 LTVKIISARNLPKK---DKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKDRFG- 77 (101)
T ss_pred eEEEEEEeeCCCCC---CCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecCCcc-
Confidence 67999999999875 33357899999999764 79999999999999999999999987 888999999988643
Q ss_pred CCccCCCCCCCCCeeEEEEEEcccccCCc
Q 001696 690 GEKQNGSSAVRDSRIGKVRIRLSTLEAHR 718 (1026)
Q Consensus 690 ~~~~~~~~~~~~~~lG~~~i~l~~l~~~~ 718 (1026)
.+.+||.+.++|.++..+.
T Consensus 78 ----------~~~~~G~~~~~l~~~~~~~ 96 (101)
T smart00239 78 ----------RDDFIGQVTIPLSDLLLGG 96 (101)
T ss_pred ----------CCceeEEEEEEHHHcccCc
Confidence 6899999999999997765
No 214
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=99.05 E-value=1.5e-09 Score=98.82 Aligned_cols=92 Identities=34% Similarity=0.633 Sum_probs=82.0
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCe---eeEeeeecCCCCCeEeEEEEEEecCCCCCeEEEEEEeCCCCCCCce
Q 001696 287 LYVRVVKAKDLPPSSITGSCDPYVEVKMGNY---KGRTKHFEKRMNPEWNQVFAFSKERIQSSMLEVFLKDKEMVGRDDY 363 (1026)
Q Consensus 287 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~---~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~v~V~d~~~~~~d~~ 363 (1026)
|.|+|++|++|......+..+|||++++.+. ..+|+++.++.||.|||+|.|.+.......|.|+|||.+..+.+.+
T Consensus 2 l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~~~~~~ 81 (101)
T smart00239 2 LTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKDRFGRDDF 81 (101)
T ss_pred eEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecCCccCCce
Confidence 6799999999988776567899999999875 7999999999999999999999877656899999999998878999
Q ss_pred eEEEEEEccccCCCC
Q 001696 364 LGRVAFDLNEVPTRV 378 (1026)
Q Consensus 364 lG~~~i~l~~l~~~~ 378 (1026)
+|.+.+++.++..+.
T Consensus 82 ~G~~~~~l~~~~~~~ 96 (101)
T smart00239 82 IGQVTIPLSDLLLGG 96 (101)
T ss_pred eEEEEEEHHHcccCc
Confidence 999999999987654
No 215
>PLN02223 phosphoinositide phospholipase C
Probab=99.04 E-value=2.2e-09 Score=121.90 Aligned_cols=117 Identities=16% Similarity=0.236 Sum_probs=94.8
Q ss_pred eEEEEEEEEeecCCCC-----CCCCCCCcEEEEEECC-----eeeEeeeecCCCCCeEeEEEEEEecCCCCCeEEEEEEe
Q 001696 285 SYLYVRVVKAKDLPPS-----SITGSCDPYVEVKMGN-----YKGRTKHFEKRMNPEWNQVFAFSKERIQSSMLEVFLKD 354 (1026)
Q Consensus 285 ~~L~V~v~~a~~L~~~-----d~~g~~dpyv~v~~~~-----~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~v~V~d 354 (1026)
..|.|+|+.|.+++.. +....+||||+|.+.| .+++|.+..++.||+|||+|.|.+..++-..|+|+|+|
T Consensus 409 ~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PELAlLrf~V~D 488 (537)
T PLN02223 409 KILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDLALISFEVYD 488 (537)
T ss_pred eEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCceEEEEEEEe
Confidence 5799999999987521 2234689999999976 25678887889999999999999988877889999999
Q ss_pred CCCCCCCceeEEEEEEccccCCCCCCCCCCCCEEEEeecCCCCCcccceEEEEEE
Q 001696 355 KEMVGRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLEDRRGEGKVRGQTMLAIW 409 (1026)
Q Consensus 355 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~ 409 (1026)
+|..++++|+|++.+|+..+..+- ++++|.+..+..-..-.|.+.+.
T Consensus 489 ~D~~~~ddfiGQ~~LPv~~Lr~Gy--------R~VpL~~~~g~~l~~~~Ll~~f~ 535 (537)
T PLN02223 489 YEVSTADAFCGQTCLPVSELIEGI--------RAVPLYDERGKACSSTMLLTRFK 535 (537)
T ss_pred cCCCCCCcEEEEEecchHHhcCCc--------eeEeccCCCcCCCCCceEEEEEE
Confidence 999889999999999999998774 78899988775333445555554
No 216
>PLN02223 phosphoinositide phospholipase C
Probab=98.99 E-value=5e-09 Score=119.08 Aligned_cols=106 Identities=23% Similarity=0.314 Sum_probs=84.9
Q ss_pred eEEEEEEEEecCCCCC--ccCCCCCCcCcEEEEEECC-----EEEEeeeecCCCCceeecEEEEEeeCC-CCEEEEEEEe
Q 001696 612 GILEVGILGAQGLLPM--KMKDGRGSTDAYCIAKYGQ-----KWVRTRTILDTFNPKWNEQYTWEVYDP-CTVITLGVFD 683 (1026)
Q Consensus 612 g~L~v~v~~a~~L~~~--~~~~~~~~~dpyv~v~~g~-----~~~~T~~~~~t~~P~wne~~~~~v~~~-~~~l~i~v~d 683 (1026)
..|.|.|+.|++++.. +..+.....||||+|.+.| ...+|.+..++.||+|||.|.|+|..| -..|.|+|+|
T Consensus 409 ~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PELAlLrf~V~D 488 (537)
T PLN02223 409 KILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDLALISFEVYD 488 (537)
T ss_pred eEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCceEEEEEEEe
Confidence 5799999999998621 1112234689999998833 347887778899999999999999987 4579999999
Q ss_pred CCCCCCCCccCCCCCCCCCeeEEEEEEcccccCCceEeeeEeeeecCC
Q 001696 684 NCHLGGGEKQNGSSAVRDSRIGKVRIRLSTLEAHRIYTHSYPLLVLHP 731 (1026)
Q Consensus 684 ~~~~~~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~ 731 (1026)
+|..+ ++++||+..||++.|+.|- ++.+|.+...
T Consensus 489 ~D~~~-----------~ddfiGQ~~LPv~~Lr~Gy---R~VpL~~~~g 522 (537)
T PLN02223 489 YEVST-----------ADAFCGQTCLPVSELIEGI---RAVPLYDERG 522 (537)
T ss_pred cCCCC-----------CCcEEEEEecchHHhcCCc---eeEeccCCCc
Confidence 99754 7899999999999999995 7789875443
No 217
>PLN02952 phosphoinositide phospholipase C
Probab=98.94 E-value=8e-09 Score=120.25 Aligned_cols=118 Identities=20% Similarity=0.330 Sum_probs=93.7
Q ss_pred eeEEEEEEEEeecCCCC------CCCCCCCcEEEEEECC-----eeeEeeeecCCCCCeEeEEEEEEecCCCCCeEEEEE
Q 001696 284 MSYLYVRVVKAKDLPPS------SITGSCDPYVEVKMGN-----YKGRTKHFEKRMNPEWNQVFAFSKERIQSSMLEVFL 352 (1026)
Q Consensus 284 ~~~L~V~v~~a~~L~~~------d~~g~~dpyv~v~~~~-----~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~v~V 352 (1026)
...|.|+|+.|.+++.. +.....||||+|.+-| .+.+|+++.++.||+|||+|.|.+..++-..|+|+|
T Consensus 469 ~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELAllrf~V 548 (599)
T PLN02952 469 KKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELALLRIEV 548 (599)
T ss_pred cceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCccEEEEEE
Confidence 35799999999987531 1112359999999975 467999999999999999999998877667899999
Q ss_pred EeCCCCCCCceeEEEEEEccccCCCCCCCCCCCCEEEEeecCCCCCcccceEEEEEE
Q 001696 353 KDKEMVGRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLEDRRGEGKVRGQTMLAIW 409 (1026)
Q Consensus 353 ~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~ 409 (1026)
+|+|..+.++++|++.+++..|..+. +|++|.+..+..-..-.|.+.++
T Consensus 549 ~D~D~~~~ddfiGq~~lPv~~Lr~Gy--------R~VpL~~~~G~~l~~a~Llv~f~ 597 (599)
T PLN02952 549 REYDMSEKDDFGGQTCLPVSELRPGI--------RSVPLHDKKGEKLKNVRLLMRFI 597 (599)
T ss_pred EecCCCCCCCeEEEEEcchhHhcCCc--------eeEeCcCCCCCCCCCEEEEEEEE
Confidence 99999889999999999999998774 79999887765322333444444
No 218
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=98.94 E-value=1.7e-10 Score=129.45 Aligned_cols=126 Identities=29% Similarity=0.563 Sum_probs=107.0
Q ss_pred ceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----------------------------e--eeEeeeecCCCCCe
Q 001696 283 QMSYLYVRVVKAKDLPPSSITGSCDPYVEVKMGN-----------------------------Y--KGRTKHFEKRMNPE 331 (1026)
Q Consensus 283 ~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~-----------------------------~--~~kT~~~~~t~nP~ 331 (1026)
+...+.|.+..|+||.+++.+|.+|||+...+.. . .+-|.++++|+||.
T Consensus 112 P~~~l~is~~~ak~l~akd~ngfSdP~~m~g~~p~~~~~~~pra~~eqrdgl~~~~~~~GpiPAKlIkatsvk~~TLnPk 191 (1103)
T KOG1328|consen 112 PSVLLNISLLEAKDLIAKDVNGFSDPFAMMGVVPGTRKENSPRALHEQRDGLMHRFQDTGPIPAKLIKATSVKKKTLNPK 191 (1103)
T ss_pred CcHHHHHHHHHhcCccccCCCCCCChhhhhccccccccccChhhhhhhhhhhhhccccCCCCcHHHhhhcccccccCCcc
Confidence 4456788899999999999999999999987631 0 13478889999999
Q ss_pred EeEEEEEEecCCCCCeEEEEEEeCCC---------------------------------CC---CCceeEEEEEEccccC
Q 001696 332 WNQVFAFSKERIQSSMLEVFLKDKEM---------------------------------VG---RDDYLGRVAFDLNEVP 375 (1026)
Q Consensus 332 wne~f~f~v~~~~~~~L~v~V~d~~~---------------------------------~~---~d~~lG~~~i~l~~l~ 375 (1026)
|+|.|.|.+++...+.+.+.+||+|. .+ .|+|+|++.|++.++.
T Consensus 192 W~EkF~F~IeDv~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDDFLGciNipl~EiP 271 (1103)
T KOG1328|consen 192 WSEKFQFTIEDVQTDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDDFLGCINIPLAEIP 271 (1103)
T ss_pred hhhheeeehhccccceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCccccccccccccchhcCC
Confidence 99999999999999999999999873 12 3899999999999998
Q ss_pred CCCCCCCCCCCEEEEeecCCCCCcccceEEEEEEecccC
Q 001696 376 TRVPPDSPLAPQWYRLEDRRGEGKVRGQTMLAIWMGTQA 414 (1026)
Q Consensus 376 ~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~~~ 414 (1026)
... ..+||.|+..+..+++.|.+++.+|+.+..
T Consensus 272 ~~G------ld~WFkLepRS~~S~VqG~~~LklwLsT~e 304 (1103)
T KOG1328|consen 272 PDG------LDQWFKLEPRSDKSKVQGQVKLKLWLSTKE 304 (1103)
T ss_pred cch------HHHHhccCcccccccccceEEEEEEEeeec
Confidence 653 239999999999999999999999998654
No 219
>PLN02952 phosphoinositide phospholipase C
Probab=98.93 E-value=1e-08 Score=119.42 Aligned_cols=119 Identities=24% Similarity=0.328 Sum_probs=92.8
Q ss_pred eEEEEEEEEecCCCCCcc---CCCCCCcCcEEEEEE-C----CEEEEeeeecCCCCceeecEEEEEeeCC-CCEEEEEEE
Q 001696 612 GILEVGILGAQGLLPMKM---KDGRGSTDAYCIAKY-G----QKWVRTRTILDTFNPKWNEQYTWEVYDP-CTVITLGVF 682 (1026)
Q Consensus 612 g~L~v~v~~a~~L~~~~~---~~~~~~~dpyv~v~~-g----~~~~~T~~~~~t~~P~wne~~~~~v~~~-~~~l~i~v~ 682 (1026)
..|.|.|+.|++|+.... .+.....||||+|.+ | ..+.+|+++.++.||.|||.|.|++..| -..|.|.|+
T Consensus 470 ~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELAllrf~V~ 549 (599)
T PLN02952 470 KTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELALLRIEVR 549 (599)
T ss_pred ceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCccEEEEEEE
Confidence 579999999999854211 122334699999987 3 4568999999999999999999999987 457999999
Q ss_pred eCCCCCCCCccCCCCCCCCCeeEEEEEEcccccCCceEeeeEeeeecCCCCCccCcEEEEEEEEe
Q 001696 683 DNCHLGGGEKQNGSSAVRDSRIGKVRIRLSTLEAHRIYTHSYPLLVLHPHGVKKMGELQLAIRFT 747 (1026)
Q Consensus 683 d~~~~~~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~ 747 (1026)
|+|..+ .++++|+..|||+.|..|. +|++|.+.. |.. -+.+.|-++|.
T Consensus 550 D~D~~~-----------~ddfiGq~~lPv~~Lr~Gy---R~VpL~~~~--G~~-l~~a~Llv~f~ 597 (599)
T PLN02952 550 EYDMSE-----------KDDFGGQTCLPVSELRPGI---RSVPLHDKK--GEK-LKNVRLLMRFI 597 (599)
T ss_pred ecCCCC-----------CCCeEEEEEcchhHhcCCc---eeEeCcCCC--CCC-CCCEEEEEEEE
Confidence 998754 7999999999999999995 699997543 322 25566666664
No 220
>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=98.93 E-value=3.3e-09 Score=116.19 Aligned_cols=119 Identities=27% Similarity=0.484 Sum_probs=99.9
Q ss_pred eEEEEEEEEecCCCCCccCCCCCCcCcEEEEEECCEEEEeeeecCCCCceeec-EEEEEeeCC---CCEEEEEEEeCCCC
Q 001696 612 GILEVGILGAQGLLPMKMKDGRGSTDAYCIAKYGQKWVRTRTILDTFNPKWNE-QYTWEVYDP---CTVITLGVFDNCHL 687 (1026)
Q Consensus 612 g~L~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~g~~~~~T~~~~~t~~P~wne-~~~~~v~~~---~~~l~i~v~d~~~~ 687 (1026)
|.|.|.|..|++|+.|+. .....|.||.|++++..+||.+..+++||.||- -|.|.|.|. ...|+|.++|+|..
T Consensus 3 gkl~vki~a~r~lpvmdk--asd~tdafveik~~n~t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dty 80 (1169)
T KOG1031|consen 3 GKLGVKIKAARHLPVMDK--ASDLTDAFVEIKFANTTFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDTY 80 (1169)
T ss_pred CcceeEEEeccCCccccc--ccccchheeEEEecccceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEeccccc
Confidence 789999999999999953 345789999999999999999999999999994 589999864 55799999999987
Q ss_pred CCCCccCCCCCCCCCeeEEEEEEcccc----------cCCceEeeeEeeeecCCCCCccCcEEEEEEEE
Q 001696 688 GGGEKQNGSSAVRDSRIGKVRIRLSTL----------EAHRIYTHSYPLLVLHPHGVKKMGELQLAIRF 746 (1026)
Q Consensus 688 ~~~~~~~~~~~~~~~~lG~~~i~l~~l----------~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f 746 (1026)
+ .++.||++.|++..| -.|..+..|+|+...- .|. +|+|.+.++.
T Consensus 81 s-----------andaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdti-hgi--rgeinvivkv 135 (1169)
T KOG1031|consen 81 S-----------ANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTI-HGI--RGEINVIVKV 135 (1169)
T ss_pred c-----------cccccceeeeccChHHHHhHHhhhcCCceEEeeeeecceec-ccc--cceeEEEEEE
Confidence 6 789999999999997 2346789999998532 233 5998887764
No 221
>PLN02270 phospholipase D alpha
Probab=98.90 E-value=1.4e-08 Score=120.25 Aligned_cols=125 Identities=18% Similarity=0.302 Sum_probs=103.8
Q ss_pred eeEEEEEEEEeecCCCCC------------------CCCCCCcEEEEEECCe-eeEeeeecCC-CCCeEeEEEEEEecCC
Q 001696 284 MSYLYVRVVKAKDLPPSS------------------ITGSCDPYVEVKMGNY-KGRTKHFEKR-MNPEWNQVFAFSKERI 343 (1026)
Q Consensus 284 ~~~L~V~v~~a~~L~~~d------------------~~g~~dpyv~v~~~~~-~~kT~~~~~t-~nP~wne~f~f~v~~~ 343 (1026)
.|.|.|+|.+|++|+.++ ..+.+||||.|.+++. ..||+++.+. .||.|+|+|.+.+...
T Consensus 7 hg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i~~ah~ 86 (808)
T PLN02270 7 HGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHIYCAHM 86 (808)
T ss_pred ecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEEEEEeecCCCCCCCccccceEEeeccC
Confidence 478999999999998631 1246799999999986 5799999884 6999999999999877
Q ss_pred CCCeEEEEEEeCCCCCCCceeEEEEEEccccCCCCCCCCCCCCEEEEeecCCCCCc-ccceEEEEEEecccCc
Q 001696 344 QSSMLEVFLKDKEMVGRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLEDRRGEGK-VRGQTMLAIWMGTQAD 415 (1026)
Q Consensus 344 ~~~~L~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~-~~G~i~l~~~~~~~~d 415 (1026)
. ..+.|+|+|.+.+|. .+||.+.|+..++..+...+ .||++.+.+++.. ....|+++++|.+...
T Consensus 87 ~-~~v~f~vkd~~~~g~-~~ig~~~~p~~~~~~g~~i~-----~~~~~~~~~~~p~~~~~~~~~~~~f~~~~~ 152 (808)
T PLN02270 87 A-SNIIFTVKDDNPIGA-TLIGRAYIPVEEILDGEEVD-----RWVEILDNDKNPIHGGSKIHVKLQYFEVTK 152 (808)
T ss_pred c-ceEEEEEecCCccCc-eEEEEEEEEHHHhcCCCccc-----cEEeccCCCCCcCCCCCEEEEEEEEEEccc
Confidence 4 789999999999954 69999999999999887665 9999999876522 2347999999987654
No 222
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=98.87 E-value=2.7e-08 Score=111.97 Aligned_cols=181 Identities=19% Similarity=0.188 Sum_probs=128.0
Q ss_pred eEEEeeeecCCCCCCcccceeEEEeeCCCcCeEEEEEEEccC----CCCCceeEEEEEeCcccccccCCCCccceeEEcc
Q 001696 480 QVLKTKICPTPTTNPLWNEDLVFVAAEPFEEQLFLTVEDRVH----ASKDEVLGKISLPLHIFEKRLDHRPVHSRWFNLE 555 (1026)
Q Consensus 480 ~~~kT~~~~~~t~nP~wne~f~f~v~~~~~~~L~i~V~d~d~----~~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~ 555 (1026)
+..+|.++ .+.+||.|-+.|.+.......+.|++.++|.+. ....+++|++...+..+..... ...-+.++
T Consensus 41 e~~rte~i-~~~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~~~----~~~~l~~~ 115 (529)
T KOG1327|consen 41 EVGRTEVI-RNVLNPFFTKKFLLQYRFEKVQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSSSG----LTGPLLLK 115 (529)
T ss_pred cccceeee-eccCCccceeeechhheeeeeeeEEEEEeecCCccCCcchhcccceeeeehhhhhhhhh----hhhhhhcc
Confidence 34588888 699999999999998887788899999999865 3568999999999998875411 11112222
Q ss_pred cCCCCchhhhhhccccccceEEEEEEecCCccccCCcccccCCccccccccCCCCceEEEEEEEEecCCCCCccCCCCCC
Q 001696 556 KFGFGAIEADRRKELKFSSRVHLRVCLEGGYHVLDESTMYISDQRPTAKQLWKPPVGILEVGILGAQGLLPMKMKDGRGS 635 (1026)
Q Consensus 556 ~~~~~~~~~~~~~~~~~~g~l~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~g~L~v~v~~a~~L~~~~~~~~~~~ 635 (1026)
... ....|.+.+.+.-... . -......++|.+|.+. |..++
T Consensus 116 ~~~-----------~~~~g~iti~aee~~~------------------------~-~~~~~~~~~~~~ld~k---d~f~k 156 (529)
T KOG1327|consen 116 PGK-----------NAGSGTITISAEEDES------------------------D-NDVVQFSFRAKNLDPK---DFFSK 156 (529)
T ss_pred cCc-----------cCCcccEEEEeecccc------------------------c-CceeeeeeeeeecCcc---ccccc
Confidence 211 1124555555531110 0 0122334468888775 88999
Q ss_pred cCcEEEEEE--C-CEE---EEeeeecCCCCceeecEEEEEee-----CCCCEEEEEEEeCCCCCCCCccCCCCCCCCCee
Q 001696 636 TDAYCIAKY--G-QKW---VRTRTILDTFNPKWNEQYTWEVY-----DPCTVITLGVFDNCHLGGGEKQNGSSAVRDSRI 704 (1026)
Q Consensus 636 ~dpyv~v~~--g-~~~---~~T~~~~~t~~P~wne~~~~~v~-----~~~~~l~i~v~d~~~~~~~~~~~~~~~~~~~~l 704 (1026)
+|||..++- + +.+ ++|.+++++++|.|- .|.++.. ++...+.|.+||++.-+ ++++|
T Consensus 157 sd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~-~~~i~~~~l~~~~~~~~~~i~~~d~~~~~-----------~~~~i 224 (529)
T KOG1327|consen 157 SDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWA-PFSISLQSLCSKDGNRPIQIECYDYDSNG-----------KHDLI 224 (529)
T ss_pred CCcceEEEEecCCCceeeccccceeccCCCCccc-ccccchhhhcccCCCCceEEEEeccCCCC-----------CcCce
Confidence 999999954 2 332 999999999999997 4555544 34567999999999754 78999
Q ss_pred EEEEEEcccccC
Q 001696 705 GKVRIRLSTLEA 716 (1026)
Q Consensus 705 G~~~i~l~~l~~ 716 (1026)
|++.-++.++..
T Consensus 225 g~~~tt~~~~~~ 236 (529)
T KOG1327|consen 225 GKFQTTLSELQE 236 (529)
T ss_pred eEecccHHHhcc
Confidence 999999999863
No 223
>PLN02230 phosphoinositide phospholipase C 4
Probab=98.85 E-value=1.3e-08 Score=118.36 Aligned_cols=117 Identities=19% Similarity=0.280 Sum_probs=88.7
Q ss_pred ceEEEEeecCCCcc---C---CCCCCCCCEEEEEeC-----CceeeeccCCCCCCcccceeEEEeccCCCCCccceEEEE
Q 001696 2 KLVVEVVDAYDLMP---K---DGEGSASPFAEVDFL-----NQLSKTKTIPKNLNPVWNQKLLFDFDQTKSHNHLRIEVS 70 (1026)
Q Consensus 2 ~L~V~v~~a~~L~~---~---~~~g~~dpyv~v~~~-----~~~~~T~~~~~t~nP~Wne~f~f~~~~~~~~~~~~L~~~ 70 (1026)
.|.|+|+.+.+++. + +.....||||+|.+- ..+++|++..++.||+|||+|.|.+.-++- ..|+|.
T Consensus 470 ~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPEL---AllRf~ 546 (598)
T PLN02230 470 TLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPEL---ALLRVE 546 (598)
T ss_pred EEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCce---eEEEEE
Confidence 58999999998742 1 122357999999993 356789999999999999999999888764 579999
Q ss_pred EeeCCCCCCCCCccceeEEecCccccccCCceeEEeeccccccccccccccceeEEe
Q 001696 71 IYHHERRPIPGRHFLGRVRIPCSNLVRKGEEVYQRFPLEKKWFLSSVKGEVGLKIYI 127 (1026)
Q Consensus 71 V~d~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 127 (1026)
|+|+|. ...++|+|+..+|+..|.. ..+..+|..+....-..-.|.+++.+
T Consensus 547 V~d~d~--~~~ddfiGQ~~lPv~~Lr~----GyR~V~L~~~~G~~l~~~~Ll~~f~~ 597 (598)
T PLN02230 547 VHEHDI--NEKDDFGGQTCLPVSEIRQ----GIHAVPLFNRKGVKYSSTRLLMRFEF 597 (598)
T ss_pred EEECCC--CCCCCEEEEEEcchHHhhC----ccceEeccCCCcCCCCCCeeEEEEEe
Confidence 999444 2479999999999998875 45677887765333233456666554
No 224
>PLN02230 phosphoinositide phospholipase C 4
Probab=98.82 E-value=2.4e-08 Score=116.01 Aligned_cols=119 Identities=18% Similarity=0.268 Sum_probs=95.9
Q ss_pred eeEEEEEEEEeecCCCC------CCCCCCCcEEEEEECC-----eeeEeeeecCCCCCeEeEEEEEEecCCCCCeEEEEE
Q 001696 284 MSYLYVRVVKAKDLPPS------SITGSCDPYVEVKMGN-----YKGRTKHFEKRMNPEWNQVFAFSKERIQSSMLEVFL 352 (1026)
Q Consensus 284 ~~~L~V~v~~a~~L~~~------d~~g~~dpyv~v~~~~-----~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~v~V 352 (1026)
...|.|+|+.+.+++.. +.....||||+|.+-| .+.+|++..++.||+|||+|.|.+..++-..|+|.|
T Consensus 468 ~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPELAllRf~V 547 (598)
T PLN02230 468 KKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPELALLRVEV 547 (598)
T ss_pred CcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCceeEEEEEE
Confidence 35799999999987421 2223579999999965 357899888999999999999998877778999999
Q ss_pred EeCCCCCCCceeEEEEEEccccCCCCCCCCCCCCEEEEeecCCCCCcccceEEEEEEe
Q 001696 353 KDKEMVGRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLEDRRGEGKVRGQTMLAIWM 410 (1026)
Q Consensus 353 ~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~ 410 (1026)
+|++..++|+|+|+..+++..|..+- +.++|.+..+..-..-.|.+.+++
T Consensus 548 ~d~d~~~~ddfiGQ~~lPv~~Lr~Gy--------R~V~L~~~~G~~l~~~~Ll~~f~~ 597 (598)
T PLN02230 548 HEHDINEKDDFGGQTCLPVSEIRQGI--------HAVPLFNRKGVKYSSTRLLMRFEF 597 (598)
T ss_pred EECCCCCCCCEEEEEEcchHHhhCcc--------ceEeccCCCcCCCCCCeeEEEEEe
Confidence 99999889999999999999998774 678999887763344566666654
No 225
>PLN02228 Phosphoinositide phospholipase C
Probab=98.79 E-value=5.5e-08 Score=112.63 Aligned_cols=122 Identities=18% Similarity=0.219 Sum_probs=93.3
Q ss_pred eEEEEEEEEecCCCC---CccCCCCCCcCcEEEEEE-----CCEEEEeeeecCCCCcee-ecEEEEEeeCC-CCEEEEEE
Q 001696 612 GILEVGILGAQGLLP---MKMKDGRGSTDAYCIAKY-----GQKWVRTRTILDTFNPKW-NEQYTWEVYDP-CTVITLGV 681 (1026)
Q Consensus 612 g~L~v~v~~a~~L~~---~~~~~~~~~~dpyv~v~~-----g~~~~~T~~~~~t~~P~w-ne~~~~~v~~~-~~~l~i~v 681 (1026)
..|+|+|+.|++|+. .+..+.....||||+|.+ +...++|+++.++.||.| ||.|.|.+..| -..|.|.|
T Consensus 431 ~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA~lRf~V 510 (567)
T PLN02228 431 TTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELALLWFKV 510 (567)
T ss_pred ceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCceeEEEEEE
Confidence 479999999999742 111122345899999987 234589999999999999 99999999987 56799999
Q ss_pred EeCCCCCCCCccCCCCCCCCCeeEEEEEEcccccCCceEeeeEeeeecCCCCCccCcEEEEEEEEee
Q 001696 682 FDNCHLGGGEKQNGSSAVRDSRIGKVRIRLSTLEAHRIYTHSYPLLVLHPHGVKKMGELQLAIRFTI 748 (1026)
Q Consensus 682 ~d~~~~~~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~~ 748 (1026)
+|+|..+ .+++||+..|||+.|..|- +..+|.+....... ..++.+++.|.+
T Consensus 511 ~D~d~~~-----------~d~figq~~lPv~~Lr~GY---R~VpL~~~~G~~l~-~atLfv~~~~~~ 562 (567)
T PLN02228 511 QDYDNDT-----------QNDFAGQTCLPLPELKSGV---RAVRLHDRAGKAYK-NTRLLVSFALDP 562 (567)
T ss_pred EeCCCCC-----------CCCEEEEEEcchhHhhCCe---eEEEccCCCCCCCC-CeEEEEEEEEcC
Confidence 9998654 7899999999999999984 56788754432222 356777777654
No 226
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=98.79 E-value=2e-08 Score=88.30 Aligned_cols=86 Identities=21% Similarity=0.302 Sum_probs=72.0
Q ss_pred EEEEEEEecCCCCCccCCCCCCcCcEEEEEECCE-EEEeeeecCCCCceeecEEEEEeeCCCCEEEEEEEeCCCCCCCCc
Q 001696 614 LEVGILGAQGLLPMKMKDGRGSTDAYCIAKYGQK-WVRTRTILDTFNPKWNEQYTWEVYDPCTVITLGVFDNCHLGGGEK 692 (1026)
Q Consensus 614 L~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~g~~-~~~T~~~~~t~~P~wne~~~~~v~~~~~~l~i~v~d~~~~~~~~~ 692 (1026)
|.|.|..|+|+....+....+.+||||.|++++. ++||++ +.||.|||.|.|+| +....+.|.|||...
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~~kaRTr~---srnd~WnE~F~i~V-dk~nEiel~VyDk~~------ 70 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRPETYVSIKVEDVERARTKP---SRNDRWNEDFEIPV-EKNNEEEVIVYDKGG------ 70 (109)
T ss_pred CEEEEEEEecCccccchhhccCCCcEEEEEECCEEEEeccC---CCCCcccceEEEEe-cCCcEEEEEEEeCCC------
Confidence 5789999999987643225678999999999877 899998 58999999999999 567789999999752
Q ss_pred cCCCCCCCCCeeEEEEEEccccc
Q 001696 693 QNGSSAVRDSRIGKVRIRLSTLE 715 (1026)
Q Consensus 693 ~~~~~~~~~~~lG~~~i~l~~l~ 715 (1026)
+..-.||-.=|.|++|.
T Consensus 71 ------~~~~Pi~llW~~~sdi~ 87 (109)
T cd08689 71 ------DQPVPVGLLWLRLSDIA 87 (109)
T ss_pred ------CeecceeeehhhHHHHH
Confidence 35678999999999983
No 227
>PLN02222 phosphoinositide phospholipase C 2
Probab=98.79 E-value=4.7e-08 Score=113.50 Aligned_cols=118 Identities=19% Similarity=0.335 Sum_probs=94.0
Q ss_pred eEEEEEEEEeecCC--C--C--CCCCCCCcEEEEEECC-----eeeEeeeecCCCCCeEeEEEEEEecCCCCCeEEEEEE
Q 001696 285 SYLYVRVVKAKDLP--P--S--SITGSCDPYVEVKMGN-----YKGRTKHFEKRMNPEWNQVFAFSKERIQSSMLEVFLK 353 (1026)
Q Consensus 285 ~~L~V~v~~a~~L~--~--~--d~~g~~dpyv~v~~~~-----~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~v~V~ 353 (1026)
..|.|+|+.+.+++ . . +.....||||+|.+.| .+.+|+++.++.||+|||+|.|.+..++-..|+|.|+
T Consensus 452 ~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLAllRf~V~ 531 (581)
T PLN02222 452 TTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELALLRLEVH 531 (581)
T ss_pred ceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCceeEEEEEEE
Confidence 57999999998753 1 1 1223579999999964 3679999999999999999999987776689999999
Q ss_pred eCCCCCCCceeEEEEEEccccCCCCCCCCCCCCEEEEeecCCCCCcccceEEEEEEe
Q 001696 354 DKEMVGRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLEDRRGEGKVRGQTMLAIWM 410 (1026)
Q Consensus 354 d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~ 410 (1026)
|+|..+.++++|++.+++..|..+- +.++|.+..+..-..-.|.+.+.+
T Consensus 532 d~D~~~~ddfigq~~lPv~~Lr~Gy--------R~V~L~~~~g~~l~~a~Lfv~~~~ 580 (581)
T PLN02222 532 EYDMSEKDDFGGQTCLPVWELSQGI--------RAFPLHSRKGEKYKSVKLLVKVEF 580 (581)
T ss_pred ECCCCCCCcEEEEEEcchhhhhCcc--------ceEEccCCCcCCCCCeeEEEEEEe
Confidence 9998888999999999999998764 678998887753333455555543
No 228
>PLN02222 phosphoinositide phospholipase C 2
Probab=98.78 E-value=6.6e-08 Score=112.30 Aligned_cols=120 Identities=20% Similarity=0.277 Sum_probs=90.1
Q ss_pred eEEEEEEEEecCCCC--Ccc-CCCCCCcCcEEEEEEC-----CEEEEeeeecCCCCceeecEEEEEeeCC-CCEEEEEEE
Q 001696 612 GILEVGILGAQGLLP--MKM-KDGRGSTDAYCIAKYG-----QKWVRTRTILDTFNPKWNEQYTWEVYDP-CTVITLGVF 682 (1026)
Q Consensus 612 g~L~v~v~~a~~L~~--~~~-~~~~~~~dpyv~v~~g-----~~~~~T~~~~~t~~P~wne~~~~~v~~~-~~~l~i~v~ 682 (1026)
..|.|.|+.+++++. .+. .+.....||||+|.+- ..+.+|+++.++.||.|||.|+|.+..| -..|.|.|+
T Consensus 452 ~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLAllRf~V~ 531 (581)
T PLN02222 452 TTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELALLRLEVH 531 (581)
T ss_pred ceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCceeEEEEEEE
Confidence 579999999998532 111 1233467999999883 3468999999999999999999999887 567999999
Q ss_pred eCCCCCCCCccCCCCCCCCCeeEEEEEEcccccCCceEeeeEeeeecCCCCCccCcEEEEEEEE
Q 001696 683 DNCHLGGGEKQNGSSAVRDSRIGKVRIRLSTLEAHRIYTHSYPLLVLHPHGVKKMGELQLAIRF 746 (1026)
Q Consensus 683 d~~~~~~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f 746 (1026)
|+|..+ .+++||+..||++.|+.|- +..+|.+....... ..++.+++.|
T Consensus 532 d~D~~~-----------~ddfigq~~lPv~~Lr~Gy---R~V~L~~~~g~~l~-~a~Lfv~~~~ 580 (581)
T PLN02222 532 EYDMSE-----------KDDFGGQTCLPVWELSQGI---RAFPLHSRKGEKYK-SVKLLVKVEF 580 (581)
T ss_pred ECCCCC-----------CCcEEEEEEcchhhhhCcc---ceEEccCCCcCCCC-CeeEEEEEEe
Confidence 998754 7899999999999999994 67788754432222 2345444443
No 229
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=98.76 E-value=2.3e-08 Score=87.92 Aligned_cols=84 Identities=15% Similarity=0.242 Sum_probs=68.0
Q ss_pred eEEEEeecCCCccCC---CCCCCCCEEEEEeCCc-eeeeccCCCCCCcccceeEEEeccCCCCCccceEEEEEeeCCCCC
Q 001696 3 LVVEVVDAYDLMPKD---GEGSASPFAEVDFLNQ-LSKTKTIPKNLNPVWNQKLLFDFDQTKSHNHLRIEVSIYHHERRP 78 (1026)
Q Consensus 3 L~V~v~~a~~L~~~~---~~g~~dpyv~v~~~~~-~~~T~~~~~t~nP~Wne~f~f~~~~~~~~~~~~L~~~V~d~d~~~ 78 (1026)
|.|+|.+|||+.-.+ ..+.+||||.+++++. +.+|++ +.||.|||+|.|.+.. . .++.|.|||...
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~~kaRTr~---srnd~WnE~F~i~Vdk-~----nEiel~VyDk~~-- 70 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRPETYVSIKVEDVERARTKP---SRNDRWNEDFEIPVEK-N----NEEEVIVYDKGG-- 70 (109)
T ss_pred CEEEEEEEecCccccchhhccCCCcEEEEEECCEEEEeccC---CCCCcccceEEEEecC-C----cEEEEEEEeCCC--
Confidence 789999999998776 5788999999999875 888888 5999999999999954 2 589999999322
Q ss_pred CCCCccceeEEecCccccc
Q 001696 79 IPGRHFLGRVRIPCSNLVR 97 (1026)
Q Consensus 79 ~~~d~~lG~~~i~l~~l~~ 97 (1026)
...-.+|..-+.++++..
T Consensus 71 -~~~~Pi~llW~~~sdi~E 88 (109)
T cd08689 71 -DQPVPVGLLWLRLSDIAE 88 (109)
T ss_pred -CeecceeeehhhHHHHHH
Confidence 234577888888777654
No 230
>PLN02228 Phosphoinositide phospholipase C
Probab=98.76 E-value=6.6e-08 Score=111.99 Aligned_cols=120 Identities=19% Similarity=0.289 Sum_probs=97.4
Q ss_pred eEEEEEEEEeecCCC---CC---CCCCCCcEEEEEECC-----eeeEeeeecCCCCCeE-eEEEEEEecCCCCCeEEEEE
Q 001696 285 SYLYVRVVKAKDLPP---SS---ITGSCDPYVEVKMGN-----YKGRTKHFEKRMNPEW-NQVFAFSKERIQSSMLEVFL 352 (1026)
Q Consensus 285 ~~L~V~v~~a~~L~~---~d---~~g~~dpyv~v~~~~-----~~~kT~~~~~t~nP~w-ne~f~f~v~~~~~~~L~v~V 352 (1026)
..|.|+|+.|.+|+. .+ .....||||+|.+.+ .+++|+++.++.||+| ||+|.|.+..++-..|+|.|
T Consensus 431 ~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA~lRf~V 510 (567)
T PLN02228 431 TTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELALLWFKV 510 (567)
T ss_pred ceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCceeEEEEEE
Confidence 469999999998731 11 123479999999865 3579999988899999 99999998777668999999
Q ss_pred EeCCCCCCCceeEEEEEEccccCCCCCCCCCCCCEEEEeecCCCCCcccceEEEEEEecc
Q 001696 353 KDKEMVGRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLEDRRGEGKVRGQTMLAIWMGT 412 (1026)
Q Consensus 353 ~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~ 412 (1026)
+|++..+.++++|++.+++..|..+- +.++|.+..+..-....|.+.+.+.+
T Consensus 511 ~D~d~~~~d~figq~~lPv~~Lr~GY--------R~VpL~~~~G~~l~~atLfv~~~~~~ 562 (567)
T PLN02228 511 QDYDNDTQNDFAGQTCLPLPELKSGV--------RAVRLHDRAGKAYKNTRLLVSFALDP 562 (567)
T ss_pred EeCCCCCCCCEEEEEEcchhHhhCCe--------eEEEccCCCCCCCCCeEEEEEEEEcC
Confidence 99998889999999999999998763 78899988876444566887776643
No 231
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=98.74 E-value=4.1e-08 Score=113.61 Aligned_cols=118 Identities=20% Similarity=0.401 Sum_probs=96.6
Q ss_pred eEEEEEEEEeecCCCC-CC---CCCCCcEEEEEECC-----eeeEee-eecCCCCCeEeEEEEEEecCCCCCeEEEEEEe
Q 001696 285 SYLYVRVVKAKDLPPS-SI---TGSCDPYVEVKMGN-----YKGRTK-HFEKRMNPEWNQVFAFSKERIQSSMLEVFLKD 354 (1026)
Q Consensus 285 ~~L~V~v~~a~~L~~~-d~---~g~~dpyv~v~~~~-----~~~kT~-~~~~t~nP~wne~f~f~v~~~~~~~L~v~V~d 354 (1026)
..|.|.|+.+.++.+. +. ...+||||.|++-| ...+|+ +..++-||.|+|+|.|.+..++-..|+|.|+|
T Consensus 616 ~tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d 695 (746)
T KOG0169|consen 616 KTLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHD 695 (746)
T ss_pred ceeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEe
Confidence 3799999999976543 22 24689999999976 367899 45568899999999999988877899999999
Q ss_pred CCCCCCCceeEEEEEEccccCCCCCCCCCCCCEEEEeecCCCCCcccceEEEEEEe
Q 001696 355 KEMVGRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLEDRRGEGKVRGQTMLAIWM 410 (1026)
Q Consensus 355 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~ 410 (1026)
++..++|+|+|+.++|+..|..+- +-++|.+..|..-....|.+.+.+
T Consensus 696 ~d~~~~ddF~GQ~tlP~~~L~~Gy--------RhVpL~~~~G~~~~~asLfv~i~~ 743 (746)
T KOG0169|consen 696 YDYIGKDDFIGQTTLPVSELRQGY--------RHVPLLSREGEALSSASLFVRIAI 743 (746)
T ss_pred cCCCCcccccceeeccHHHhhCce--------eeeeecCCCCccccceeEEEEEEE
Confidence 999999999999999999998774 668999887664455667766655
No 232
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=98.68 E-value=6.2e-08 Score=110.54 Aligned_cols=120 Identities=25% Similarity=0.419 Sum_probs=89.6
Q ss_pred CceEEEEeecCCCccCCCCCCCCCEEEEEeC-----C-ceeeeccCCCCCCcccc-eeEEEeccCCCCCccceEEEEEee
Q 001696 1 MKLVVEVVDAYDLMPKDGEGSASPFAEVDFL-----N-QLSKTKTIPKNLNPVWN-QKLLFDFDQTKSHNHLRIEVSIYH 73 (1026)
Q Consensus 1 ~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~-----~-~~~~T~~~~~t~nP~Wn-e~f~f~~~~~~~~~~~~L~~~V~d 73 (1026)
++|.|.|++||.|+ +.+-|.+.|||+|.+- . ..++|.++.+.+||+|| |+|+|.+.+++- ..|+|.|+|
T Consensus 1065 ~~lsv~vigaRHL~-k~gr~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~---A~lRF~V~e 1140 (1267)
T KOG1264|consen 1065 MTLSVKVLGARHLP-KLGRSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEF---AFLRFVVYE 1140 (1267)
T ss_pred eEEEEEEeeccccc-cCCCCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCce---EEEEEEEec
Confidence 46899999999996 4445677899999993 2 45566667999999999 999999999985 679999999
Q ss_pred CCCCCCCCCccceeEEecCccccccCCceeEEeeccccccccccccccceeEEecCC
Q 001696 74 HERRPIPGRHFLGRVRIPCSNLVRKGEEVYQRFPLEKKWFLSSVKGEVGLKIYISPQ 130 (1026)
Q Consensus 74 ~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~~ 130 (1026)
++++ +...|||++.+|+..+.. ..+..+|...-...-...+|.+.+...+.
T Consensus 1141 -eDmf-s~~~FiaqA~yPv~~ik~----GfRsVpLkN~ySEdlELaSLLv~i~m~~~ 1191 (1267)
T KOG1264|consen 1141 -EDMF-SDPNFLAQATYPVKAIKS----GFRSVPLKNGYSEDLELASLLVFIEMRPV 1191 (1267)
T ss_pred -cccc-CCcceeeeeecchhhhhc----cceeeecccCchhhhhhhhheeeeEeccc
Confidence 5554 355699999999988764 34557777643222333556666665543
No 233
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=98.67 E-value=1.2e-07 Score=109.96 Aligned_cols=120 Identities=24% Similarity=0.383 Sum_probs=92.1
Q ss_pred EEEEEEEEecCCCCCccCC-CCCCcCcEEEEEECC-----EEEEeeee-cCCCCceeecEEEEEeeCC-CCEEEEEEEeC
Q 001696 613 ILEVGILGAQGLLPMKMKD-GRGSTDAYCIAKYGQ-----KWVRTRTI-LDTFNPKWNEQYTWEVYDP-CTVITLGVFDN 684 (1026)
Q Consensus 613 ~L~v~v~~a~~L~~~~~~~-~~~~~dpyv~v~~g~-----~~~~T~~~-~~t~~P~wne~~~~~v~~~-~~~l~i~v~d~ 684 (1026)
.|.|.|+.++|+.....+. ....+||||.|++-| ...+|+++ .++-||.|+|.|+|++..| -.-|.+.|+|+
T Consensus 617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d~ 696 (746)
T KOG0169|consen 617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHDY 696 (746)
T ss_pred eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEec
Confidence 7999999999877643222 235689999999833 34899955 5788999999999999998 56799999999
Q ss_pred CCCCCCCccCCCCCCCCCeeEEEEEEcccccCCceEeeeEeeeecCCCCCccCcEEEEEEEEe
Q 001696 685 CHLGGGEKQNGSSAVRDSRIGKVRIRLSTLEAHRIYTHSYPLLVLHPHGVKKMGELQLAIRFT 747 (1026)
Q Consensus 685 ~~~~~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~ 747 (1026)
|..+ +|+|+|+..||++.|..|- +-.||.+..+.... ..++-+++.|.
T Consensus 697 d~~~-----------~ddF~GQ~tlP~~~L~~Gy---RhVpL~~~~G~~~~-~asLfv~i~~~ 744 (746)
T KOG0169|consen 697 DYIG-----------KDDFIGQTTLPVSELRQGY---RHVPLLSREGEALS-SASLFVRIAIV 744 (746)
T ss_pred CCCC-----------cccccceeeccHHHhhCce---eeeeecCCCCcccc-ceeEEEEEEEe
Confidence 9864 8999999999999999984 55777754322222 35666666553
No 234
>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=98.67 E-value=4.9e-08 Score=107.17 Aligned_cols=110 Identities=24% Similarity=0.394 Sum_probs=94.1
Q ss_pred EEEEEEEEEeEecCCCCCC-CCCCcEEEEEECCeEEEeeeecCCCCCCcccce-eEEEeeCC--CcCeEEEEEEEccCCC
Q 001696 448 WYLRVNVIEAQDIVPNDRN-RLPEGFVKVQVGNQVLKTKICPTPTTNPLWNED-LVFVAAEP--FEEQLFLTVEDRVHAS 523 (1026)
Q Consensus 448 ~~l~V~I~~a~~L~~~d~~-~~~dpyV~v~lg~~~~kT~~~~~~t~nP~wne~-f~f~v~~~--~~~~L~i~V~d~d~~~ 523 (1026)
|.|.|.|..||+|+.+|.. ...|.||++++++..+||.+. .+++||.||.. |.|.|.+. +++.|.|++.|+|..+
T Consensus 3 gkl~vki~a~r~lpvmdkasd~tdafveik~~n~t~ktdvf-~kslnp~wnsdwfkfevddadlqdeplqi~lld~dtys 81 (1169)
T KOG1031|consen 3 GKLGVKIKAARHLPVMDKASDLTDAFVEIKFANTTFKTDVF-LKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDTYS 81 (1169)
T ss_pred CcceeEEEeccCCcccccccccchheeEEEecccceehhhh-hhhcCCcccccceEEecChhhhccCCeeEEEecccccc
Confidence 4588999999999999975 468999999999999999998 79999999965 88887554 7889999999999999
Q ss_pred CCceeEEEEEeCcccccccC------CCCccceeEEcccCC
Q 001696 524 KDEVLGKISLPLHIFEKRLD------HRPVHSRWFNLEKFG 558 (1026)
Q Consensus 524 ~d~~lG~~~i~l~~l~~~~~------~~~~~~~w~~L~~~~ 558 (1026)
.++.||.+.|++..+..... .......|+++.+.-
T Consensus 82 andaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdti 122 (1169)
T KOG1031|consen 82 ANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTI 122 (1169)
T ss_pred cccccceeeeccChHHHHhHHhhhcCCceEEeeeeecceec
Confidence 99999999999998764421 235678899998874
No 235
>PLN02352 phospholipase D epsilon
Probab=98.59 E-value=2.9e-07 Score=109.07 Aligned_cols=118 Identities=19% Similarity=0.274 Sum_probs=91.9
Q ss_pred eEEEEEEEEecCCCCCc---cCCCCCCcCcEEEEEECCEE-EEeeeecCCCCceeecEEEEEeeCCC-CEEEEEEEeCCC
Q 001696 612 GILEVGILGAQGLLPMK---MKDGRGSTDAYCIAKYGQKW-VRTRTILDTFNPKWNEQYTWEVYDPC-TVITLGVFDNCH 686 (1026)
Q Consensus 612 g~L~v~v~~a~~L~~~~---~~~~~~~~dpyv~v~~g~~~-~~T~~~~~t~~P~wne~~~~~v~~~~-~~l~i~v~d~~~ 686 (1026)
|.|.++|++|+-+...- ..-+. ..||||.|.+++.+ .|| .+..||.|||.|.+++..+. ..++|.|.|
T Consensus 10 g~l~~~i~~~~~~~~~~~~~~~~~~-~~~~y~tv~~~~~~v~rt---~~~~~p~w~e~f~i~~ah~~~~~~~f~vk~--- 82 (758)
T PLN02352 10 GTLEATIFDATPYTPPFPFNCIFLN-GKATYVTIKIGNKKVAKT---SHEYDRVWNQTFQILCAHPLDSTITITLKT--- 82 (758)
T ss_pred cceEEEEEEeeehhhcccccccccC-CCCceEEEEeCCcEEecC---CCCCCCccccceeEEeeeecCCcEEEEEec---
Confidence 89999999998332210 00112 23999999998766 688 66679999999999999987 689999999
Q ss_pred CCCCCccCCCCCCCCCeeEEEEEEcccccCCce-EeeeEeeeecCCCCCccCcEEEEEEEEeecc
Q 001696 687 LGGGEKQNGSSAVRDSRIGKVRIRLSTLEAHRI-YTHSYPLLVLHPHGVKKMGELQLAIRFTIFS 750 (1026)
Q Consensus 687 ~~~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~-~~~~~~L~~~~~~g~~~~G~i~l~~~f~~~~ 750 (1026)
...+||++.||+.+|..|.. ++.|+++.....+-.+ ..+|++.++|.+..
T Consensus 83 -------------~~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~~~p~~-~~~~~~~~~~~~~~ 133 (758)
T PLN02352 83 -------------KCSILGRFHIQAHQIVTEASFINGFFPLIMENGKPNP-ELKLRFMLWFRPAE 133 (758)
T ss_pred -------------CCeEEEEEEEEHHHhhCCCcccceEEEcccCCCCCCC-CCEEEEEEEEEEhh
Confidence 25799999999999998865 8999999865543332 25999999998753
No 236
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=98.58 E-value=5.6e-07 Score=101.62 Aligned_cols=181 Identities=15% Similarity=0.242 Sum_probs=129.8
Q ss_pred eeEeeeecCCCCCeEeEEEEEEecCCCCCeEEEEEEeCCC----CCCCceeEEEEEEccccCCCCCCCCCCCCEEEEeec
Q 001696 318 KGRTKHFEKRMNPEWNQVFAFSKERIQSSMLEVFLKDKEM----VGRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLED 393 (1026)
Q Consensus 318 ~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~v~V~d~~~----~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~ 393 (1026)
..+|.++.+.+||.|-+.|.+...-...+.|++.++|.+. ....+|+|++...+..+....... .-+.++.
T Consensus 42 ~~rte~i~~~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~~~~~-----~~l~~~~ 116 (529)
T KOG1327|consen 42 VGRTEVIRNVLNPFFTKKFLLQYRFEKVQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSSSGLT-----GPLLLKP 116 (529)
T ss_pred ccceeeeeccCCccceeeechhheeeeeeeEEEEEeecCCccCCcchhcccceeeeehhhhhhhhhhh-----hhhhccc
Confidence 4589999999999999998877654446789999998654 357789999999999887654322 1122222
Q ss_pred CCCCCcccceEEEEEEecccCchhhhhcccccCccccCCCccccccccccCCceEEEEEEEEEeEecCCCCCCCCCCcEE
Q 001696 394 RRGEGKVRGQTMLAIWMGTQADEAFAEAWHSDASSVYGEGVFNIRSKVYVSPKLWYLRVNVIEAQDIVPNDRNRLPEGFV 473 (1026)
Q Consensus 394 ~~~~~~~~G~i~l~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~~r~~~~~~p~~~~l~V~I~~a~~L~~~d~~~~~dpyV 473 (1026)
+.....|.|.+.+.-....+ ....-.++|++|...|..+++|||.
T Consensus 117 --~~~~~~g~iti~aee~~~~~---------------------------------~~~~~~~~~~~ld~kd~f~ksd~~l 161 (529)
T KOG1327|consen 117 --GKNAGSGTITISAEEDESDN---------------------------------DVVQFSFRAKNLDPKDFFSKSDPYL 161 (529)
T ss_pred --CccCCcccEEEEeecccccC---------------------------------ceeeeeeeeeecCcccccccCCcce
Confidence 12234577766552111000 1223345589999999999999999
Q ss_pred EEEE--CC----eEEEeeeecCCCCCCcccceeEEEeeCC----CcCeEEEEEEEccCCCCCceeEEEEEeCccccc
Q 001696 474 KVQV--GN----QVLKTKICPTPTTNPLWNEDLVFVAAEP----FEEQLFLTVEDRVHASKDEVLGKISLPLHIFEK 540 (1026)
Q Consensus 474 ~v~l--g~----~~~kT~~~~~~t~nP~wne~f~f~v~~~----~~~~L~i~V~d~d~~~~d~~lG~~~i~l~~l~~ 540 (1026)
.++- +. ..++|.++ +++++|.|.. |.+..... .+..+.+.+||++..+++++||++..++.++..
T Consensus 162 ~~~~~~~d~s~~~~~~tEv~-~n~l~p~w~~-~~i~~~~l~~~~~~~~~~i~~~d~~~~~~~~~ig~~~tt~~~~~~ 236 (529)
T KOG1327|consen 162 EFYKRVDDGSTQMLYRTEVV-KNTLNPQWAP-FSISLQSLCSKDGNRPIQIECYDYDSNGKHDLIGKFQTTLSELQE 236 (529)
T ss_pred EEEEecCCCceeecccccee-ccCCCCcccc-cccchhhhcccCCCCceEEEEeccCCCCCcCceeEecccHHHhcc
Confidence 8876 22 46799999 7999999988 44443222 246889999999998999999999999998864
No 237
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=98.54 E-value=3.3e-07 Score=104.83 Aligned_cols=119 Identities=21% Similarity=0.343 Sum_probs=93.8
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----ee-eEeeeecCCCCCeEe-EEEEEEecCCCCCeEEEEEEeCCC
Q 001696 285 SYLYVRVVKAKDLPPSSITGSCDPYVEVKMGN-----YK-GRTKHFEKRMNPEWN-QVFAFSKERIQSSMLEVFLKDKEM 357 (1026)
Q Consensus 285 ~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~-----~~-~kT~~~~~t~nP~wn-e~f~f~v~~~~~~~L~v~V~d~~~ 357 (1026)
-.|.|.|+.||.|+... .|...|||.|.+-| .+ ++|.++.+++||+|| |.|.|.+.+++-..|+|.|+|.|.
T Consensus 1065 ~~lsv~vigaRHL~k~g-r~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~eeDm 1143 (1267)
T KOG1264|consen 1065 MTLSVKVLGARHLPKLG-RSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVVYEEDM 1143 (1267)
T ss_pred eEEEEEEeeccccccCC-CCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEEecccc
Confidence 47899999999998544 34577999999865 23 455667889999999 999999999988999999999999
Q ss_pred CCCCceeEEEEEEccccCCCCCCCCCCCCEEEEeecCCCCCcccceEEEEEEecc
Q 001696 358 VGRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLEDRRGEGKVRGQTMLAIWMGT 412 (1026)
Q Consensus 358 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~ 412 (1026)
++...|||++.+|+..+..+- +-.+|.+.-.+.-....|.+.+...+
T Consensus 1144 fs~~~FiaqA~yPv~~ik~Gf--------RsVpLkN~ySEdlELaSLLv~i~m~~ 1190 (1267)
T KOG1264|consen 1144 FSDPNFLAQATYPVKAIKSGF--------RSVPLKNGYSEDLELASLLVFIEMRP 1190 (1267)
T ss_pred cCCcceeeeeecchhhhhccc--------eeeecccCchhhhhhhhheeeeEecc
Confidence 998899999999999997653 45677765433334455666655444
No 238
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=98.41 E-value=2.4e-07 Score=110.09 Aligned_cols=113 Identities=27% Similarity=0.360 Sum_probs=96.3
Q ss_pred eeEeeeccccceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeEeeeecCCCCCeEeEEEEEE---ecCCC
Q 001696 273 RFTSTYDLVEQMSYLYVRVVKAKDLPPSSITGSCDPYVEVKMGN-----YKGRTKHFEKRMNPEWNQVFAFS---KERIQ 344 (1026)
Q Consensus 273 ~~~~~y~~~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~-----~~~kT~~~~~t~nP~wne~f~f~---v~~~~ 344 (1026)
.+++.|. .+.|+|.|..|++|+-..-+..+||||+.++.+ .+.||+++++|.||.|||...+. .+.+.
T Consensus 1516 ~LsIsY~----~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~~l~ 1591 (1639)
T KOG0905|consen 1516 KLSISYN----NGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPKEILQ 1591 (1639)
T ss_pred EEEEEEc----CceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCCchhhhh
Confidence 7788884 689999999999997665566799999999975 26899999999999999998765 45556
Q ss_pred CCeEEEEEEeCCCCCCCceeEEEEEEccccCCCCCCCCCCCCEEEEeecC
Q 001696 345 SSMLEVFLKDKEMVGRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLEDR 394 (1026)
Q Consensus 345 ~~~L~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~ 394 (1026)
...|+++||..+.+..+.++|.+.|+|.++....... .||.|...
T Consensus 1592 qReLQ~sVls~~~~~en~~lg~v~i~L~~~~l~kE~~-----~Wy~lg~~ 1636 (1639)
T KOG0905|consen 1592 QRELQVSVLSNGGLLENVFLGGVNIPLLKVDLLKESV-----GWYNLGAC 1636 (1639)
T ss_pred hheeeeeeecccceeeeeeeeeeecchhhcchhhhhc-----ceeecccc
Confidence 7899999999999989999999999999998765543 89999754
No 239
>PLN02352 phospholipase D epsilon
Probab=98.26 E-value=5.7e-06 Score=98.28 Aligned_cols=119 Identities=20% Similarity=0.336 Sum_probs=92.2
Q ss_pred eeEEEEEEEEeecCCCC----CCC-CCCCcEEEEEECCe-eeEeeeecCCCCCeEeEEEEEEecCCCCCeEEEEEEeCCC
Q 001696 284 MSYLYVRVVKAKDLPPS----SIT-GSCDPYVEVKMGNY-KGRTKHFEKRMNPEWNQVFAFSKERIQSSMLEVFLKDKEM 357 (1026)
Q Consensus 284 ~~~L~V~v~~a~~L~~~----d~~-g~~dpyv~v~~~~~-~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~v~V~d~~~ 357 (1026)
.|.|.++|.+|+-+... ... ...+|||.|.+++. ..|| .+..||.|+|+|.+.+.......+.|+|+|
T Consensus 9 hg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~~v~rt---~~~~~p~w~e~f~i~~ah~~~~~~~f~vk~--- 82 (758)
T PLN02352 9 HGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGNKKVAKT---SHEYDRVWNQTFQILCAHPLDSTITITLKT--- 82 (758)
T ss_pred ccceEEEEEEeeehhhcccccccccCCCCceEEEEeCCcEEecC---CCCCCCccccceeEEeeeecCCcEEEEEec---
Confidence 47899999999843221 111 12399999999986 4688 556699999999999987754689999999
Q ss_pred CCCCceeEEEEEEccccCCCCC-CCCCCCCEEEEeecCCCCCcccceEEEEEEecccCc
Q 001696 358 VGRDDYLGRVAFDLNEVPTRVP-PDSPLAPQWYRLEDRRGEGKVRGQTMLAIWMGTQAD 415 (1026)
Q Consensus 358 ~~~d~~lG~~~i~l~~l~~~~~-~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~~~d 415 (1026)
...+||.+.|+..++..+.. .+ .||++.+.+++......|+++++|.+...
T Consensus 83 --~~~~ig~~~~p~~~~~~g~~~~~-----~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 134 (758)
T PLN02352 83 --KCSILGRFHIQAHQIVTEASFIN-----GFFPLIMENGKPNPELKLRFMLWFRPAEL 134 (758)
T ss_pred --CCeEEEEEEEEHHHhhCCCcccc-----eEEEcccCCCCCCCCCEEEEEEEEEEhhh
Confidence 36799999999999988754 44 99999998765322248999999987654
No 240
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=98.25 E-value=1.1e-06 Score=79.51 Aligned_cols=112 Identities=25% Similarity=0.358 Sum_probs=80.6
Q ss_pred EEEEEEEecCCCCCccC----C------CCCCcCcEEEEEE----CCEEEEeeeecCCCCceeecEEEEEee--------
Q 001696 614 LEVGILGAQGLLPMKMK----D------GRGSTDAYCIAKY----GQKWVRTRTILDTFNPKWNEQYTWEVY-------- 671 (1026)
Q Consensus 614 L~v~v~~a~~L~~~~~~----~------~~~~~dpyv~v~~----g~~~~~T~~~~~t~~P~wne~~~~~v~-------- 671 (1026)
|.|.|++|.||+++-.+ | ..-..++||++.+ +++..+|+++.++..|.|+-.++|++.
T Consensus 1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~G 80 (143)
T cd08683 1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSG 80 (143)
T ss_pred CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCC
Confidence 46899999999874221 1 1124699999985 578899999999999999999999885
Q ss_pred CC--------CCEEEEEEEeCCCCCCCCccCCCCCCCCCeeEEEEEEcccccC-CceEeeeEee
Q 001696 672 DP--------CTVITLGVFDNCHLGGGEKQNGSSAVRDSRIGKVRIRLSTLEA-HRIYTHSYPL 726 (1026)
Q Consensus 672 ~~--------~~~l~i~v~d~~~~~~~~~~~~~~~~~~~~lG~~~i~l~~l~~-~~~~~~~~~L 726 (1026)
.. ...|.++||+...-+.+.- ..-...+|-.||++.||+.+|-. ...++.|||+
T Consensus 81 e~~sLAElLe~~eiil~vwHr~~~s~~~~-~~~~~~~DilLG~v~IPl~~Ll~~rsGitGW~pi 143 (143)
T cd08683 81 EAISLAELLESAEIILEVWHRNPKSAGDT-IKIETSGDILLGTVKIPLRDLLTKRSGITGWYPI 143 (143)
T ss_pred ccccHHHHhhcceEEeeeeecCCccccce-eccCcCCcEEEEEEEeeHHHHhhcccCccccccC
Confidence 11 3479999999876431100 00113467789999999999843 3456899985
No 241
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=98.18 E-value=1.3e-06 Score=104.06 Aligned_cols=107 Identities=23% Similarity=0.299 Sum_probs=87.8
Q ss_pred ceEEEEeecCCCccCCCCCCCCCEEEEEeC-----CceeeeccCCCCCCcccceeEEEeccCCCCCccceEEEEEeeCCC
Q 001696 2 KLVVEVVDAYDLMPKDGEGSASPFAEVDFL-----NQLSKTKTIPKNLNPVWNQKLLFDFDQTKSHNHLRIEVSIYHHER 76 (1026)
Q Consensus 2 ~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~-----~~~~~T~~~~~t~nP~Wne~f~f~~~~~~~~~~~~L~~~V~d~d~ 76 (1026)
+|.|-|..|++|.--..+..+||||+.++. ..+++|+++++|.||.|||...+.-.+.+.++...|.+.||. .
T Consensus 1525 ~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~~l~qReLQ~sVls--~ 1602 (1639)
T KOG0905|consen 1525 TLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPKEILQQRELQVSVLS--N 1602 (1639)
T ss_pred eEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCCchhhhhhheeeeeeec--c
Confidence 588999999999544445689999999993 257899999999999999999999665555666789999999 3
Q ss_pred CCCCCCccceeEEecCccccccCCceeEEeecccc
Q 001696 77 RPIPGRHFLGRVRIPCSNLVRKGEEVYQRFPLEKK 111 (1026)
Q Consensus 77 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~ 111 (1026)
.....+.|||.+.|+|.++....+ ...||+|...
T Consensus 1603 ~~~~en~~lg~v~i~L~~~~l~kE-~~~Wy~lg~~ 1636 (1639)
T KOG0905|consen 1603 GGLLENVFLGGVNIPLLKVDLLKE-SVGWYNLGAC 1636 (1639)
T ss_pred cceeeeeeeeeeecchhhcchhhh-hcceeecccc
Confidence 334578899999999998877654 6689999764
No 242
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=98.02 E-value=6.3e-06 Score=74.76 Aligned_cols=106 Identities=21% Similarity=0.428 Sum_probs=79.6
Q ss_pred eEEEEeecCCCccC-------C--C----CCCCCCEEEEEe----CCceeeeccCCCCCCcccceeEEEeccCC------
Q 001696 3 LVVEVVDAYDLMPK-------D--G----EGSASPFAEVDF----LNQLSKTKTIPKNLNPVWNQKLLFDFDQT------ 59 (1026)
Q Consensus 3 L~V~v~~a~~L~~~-------~--~----~g~~dpyv~v~~----~~~~~~T~~~~~t~nP~Wne~f~f~~~~~------ 59 (1026)
|.|.|++|.||... + . .-.-|+||++.+ +++.++|+++-+|..|+||-+++|.+.-.
T Consensus 1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~G 80 (143)
T cd08683 1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSG 80 (143)
T ss_pred CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCC
Confidence 57899999999742 1 1 113589999996 56889999999999999999999997621
Q ss_pred ------CCCccceEEEEEeeCCCCC--------CCCCccceeEEecCccccccCCceeEEeec
Q 001696 60 ------KSHNHLRIEVSIYHHERRP--------IPGRHFLGRVRIPCSNLVRKGEEVYQRFPL 108 (1026)
Q Consensus 60 ------~~~~~~~L~~~V~d~d~~~--------~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L 108 (1026)
+.++...+.|+||+-...+ ..+|=.||.+.||+.+|.........||++
T Consensus 81 e~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~rsGitGW~pi 143 (143)
T cd08683 81 EAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKRSGITGWYPI 143 (143)
T ss_pred ccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhcccCccccccC
Confidence 1224468999999932221 123458999999999998877668889875
No 243
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=97.93 E-value=0.0013 Score=72.41 Aligned_cols=238 Identities=14% Similarity=0.148 Sum_probs=158.3
Q ss_pred EEEEEEEeEecCCCCCCCCCCcEEEEEECCeEEEeeeecCCCCCCcccceeEEEeeCC-------CcCeEEEEEEEcc-C
Q 001696 450 LRVNVIEAQDIVPNDRNRLPEGFVKVQVGNQVLKTKICPTPTTNPLWNEDLVFVAAEP-------FEEQLFLTVEDRV-H 521 (1026)
Q Consensus 450 l~V~I~~a~~L~~~d~~~~~dpyV~v~lg~~~~kT~~~~~~t~nP~wne~f~f~v~~~-------~~~~L~i~V~d~d-~ 521 (1026)
+.|.|++|++.+... .-.-.|..+++++...|..+ ..+..|.||..+.+.+... +...|+++.|..+ .
T Consensus 2 ivl~i~egr~F~~~~---~~~~vv~a~~ng~~l~TDpv-~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~~ 77 (340)
T PF12416_consen 2 IVLSILEGRNFPQRP---RHPIVVEAKFNGESLETDPV-PHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVDGS 77 (340)
T ss_pred EEEEEecccCCCCCC---CccEEEEEEeCCceeeecCC-CCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEecCC
Confidence 678999999998763 23578999999999999988 6999999999999986332 4568999999988 5
Q ss_pred CCCCceeEEEEEeCccc-ccccCCCCccceeEEcccCCCCchhhhhhccccccceEEEEEEecCCccccCC---------
Q 001696 522 ASKDEVLGKISLPLHIF-EKRLDHRPVHSRWFNLEKFGFGAIEADRRKELKFSSRVHLRVCLEGGYHVLDE--------- 591 (1026)
Q Consensus 522 ~~~d~~lG~~~i~l~~l-~~~~~~~~~~~~w~~L~~~~~~~~~~~~~~~~~~~g~l~l~~~~~~~~~~~~~--------- 591 (1026)
.+..+.||.+.++|... .....+.....+||+|-+... +..+..-+|.+.+++.......+.
T Consensus 78 ~~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~~~--------~y~~~KPEl~l~l~ie~~~~~~~~~~~~~~~~~ 149 (340)
T PF12416_consen 78 TGKRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSSSS--------KYKKHKPELLLSLSIEDDSKPQTPDFESFKAKP 149 (340)
T ss_pred CCcceeccEEEEEccccccccccccccCCCeeEcccccc--------ccccCCccEEEEEEEeccccccCCccccccccC
Confidence 67889999999999998 111223356789999998831 122345577777777543321000
Q ss_pred cccccC-------Cccccc--ccc-----C--------CCCceEEEEEEEEecCCCCCccCC---CCCCcCcEEEEEECC
Q 001696 592 STMYIS-------DQRPTA--KQL-----W--------KPPVGILEVGILGAQGLLPMKMKD---GRGSTDAYCIAKYGQ 646 (1026)
Q Consensus 592 ~~~~~~-------d~~~~~--~~~-----~--------~~~~g~L~v~v~~a~~L~~~~~~~---~~~~~dpyv~v~~g~ 646 (1026)
.+.... ...+.. ..+ + -...=.|.|+|-.|++|..+-... ..+....|....+=|
T Consensus 150 ~p~~~~~~~~~~~~~~~~~l~~~l~~~eg~lQIGp~~~~~d~FvLsvti~~a~nL~~Lip~~l~~~~~~~~f~f~YsllG 229 (340)
T PF12416_consen 150 APPRQGHVPPPNSLLSPATLIPVLLEDEGLLQIGPPDLCCDLFVLSVTIKFAENLEQLIPSSLPEEQNHSGFFFYYSLLG 229 (340)
T ss_pred CCcccCCCcccccccCccceeEEEccCCceEeeCCchhcCceEEEEEehhhhhhHHhhccccccccCCCccEEEEEEecC
Confidence 000000 001100 000 0 112345888999999987652111 113356677777766
Q ss_pred EEEEeeeecCCCCcee--ecEEEEEeeC----------CCCEEEEEEEeCCCCCCCCccCCCCCCCCCeeEEEEEEcccc
Q 001696 647 KWVRTRTILDTFNPKW--NEQYTWEVYD----------PCTVITLGVFDNCHLGGGEKQNGSSAVRDSRIGKVRIRLSTL 714 (1026)
Q Consensus 647 ~~~~T~~~~~t~~P~w--ne~~~~~v~~----------~~~~l~i~v~d~~~~~~~~~~~~~~~~~~~~lG~~~i~l~~l 714 (1026)
.-..|.......+|.| ++...+.+.. ....|.|.++. .+..||.+.|++..+
T Consensus 230 n~Vt~~~F~~l~~~~f~~er~s~vRirSS~~~L~~yf~~~~~L~I~Lc~----------------g~~~Lg~~~v~l~~L 293 (340)
T PF12416_consen 230 NDVTTEPFKSLSSPSFPPERASGVRIRSSLRVLRRYFQQIPKLQIHLCC----------------GNQSLGSTSVPLQPL 293 (340)
T ss_pred cEeEeeeccccCCCCcCeeeeeEEeecccHHHHHHHHhhCCCeEEEEee----------------CCcEEEEEEEEhhhc
Confidence 6778888888888866 4444466642 13468888877 367899999999998
Q ss_pred c
Q 001696 715 E 715 (1026)
Q Consensus 715 ~ 715 (1026)
-
T Consensus 294 l 294 (340)
T PF12416_consen 294 L 294 (340)
T ss_pred c
Confidence 4
No 244
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=97.86 E-value=0.0025 Score=70.10 Aligned_cols=245 Identities=16% Similarity=0.230 Sum_probs=155.4
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeEeeeecCCCCCeEeEEEEEEecC-------CCCCeEEEEEEeCC-CC
Q 001696 287 LYVRVVKAKDLPPSSITGSCDPYVEVKMGNYKGRTKHFEKRMNPEWNQVFAFSKER-------IQSSMLEVFLKDKE-MV 358 (1026)
Q Consensus 287 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~v~~-------~~~~~L~v~V~d~~-~~ 358 (1026)
+.|+|++|+|.+... ...-.+..++++....|-.+.++..|.||..+.|.++. .+...|++++|..+ .-
T Consensus 2 ivl~i~egr~F~~~~---~~~~vv~a~~ng~~l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~~~ 78 (340)
T PF12416_consen 2 IVLSILEGRNFPQRP---RHPIVVEAKFNGESLETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVDGST 78 (340)
T ss_pred EEEEEecccCCCCCC---CccEEEEEEeCCceeeecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEecCCC
Confidence 578999999998763 34667889999999999999999999999999998642 34678999999887 45
Q ss_pred CCCceeEEEEEEccccCCCCCCCCCCCCEEEEeecCCCC-CcccceEEEEEEecccCchhhhhcc---cccCcccc----
Q 001696 359 GRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLEDRRGE-GKVRGQTMLAIWMGTQADEAFAEAW---HSDASSVY---- 430 (1026)
Q Consensus 359 ~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~-~~~~G~i~l~~~~~~~~d~~~~~~~---~~d~~~~~---- 430 (1026)
+..+.||.+.++|....-.........+.||+|...+.+ .+.+-+|.+.+...........+.. ....+...
T Consensus 79 ~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~~~~y~~~KPEl~l~l~ie~~~~~~~~~~~~~~~~~~p~~~~~~~ 158 (340)
T PF12416_consen 79 GKRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSSSSKYKKHKPELLLSLSIEDDSKPQTPDFESFKAKPAPPRQGHVP 158 (340)
T ss_pred CcceeccEEEEEccccccccccccccCCCeeEccccccccccCCccEEEEEEEeccccccCCccccccccCCCcccCCCc
Confidence 678899999999998811111112355699999887432 2356778888776654432111000 00000000
Q ss_pred -----------------CCCccccccccccCCceEEEEEEEEEeEecCCCC----C--CCCCCcEEEEEECCeEEEeeee
Q 001696 431 -----------------GEGVFNIRSKVYVSPKLWYLRVNVIEAQDIVPND----R--NRLPEGFVKVQVGNQVLKTKIC 487 (1026)
Q Consensus 431 -----------------~~~~~~~r~~~~~~p~~~~l~V~I~~a~~L~~~d----~--~~~~dpyV~v~lg~~~~kT~~~ 487 (1026)
.++...+... ...-..+.|.|+|..|++|...- . .+....|....+-+....|..-
T Consensus 159 ~~~~~~~~~~l~~~l~~~eg~lQIGp~-~~~~d~FvLsvti~~a~nL~~Lip~~l~~~~~~~~f~f~YsllGn~Vt~~~F 237 (340)
T PF12416_consen 159 PPNSLLSPATLIPVLLEDEGLLQIGPP-DLCCDLFVLSVTIKFAENLEQLIPSSLPEEQNHSGFFFYYSLLGNDVTTEPF 237 (340)
T ss_pred ccccccCccceeEEEccCCceEeeCCc-hhcCceEEEEEehhhhhhHHhhccccccccCCCccEEEEEEecCcEeEeeec
Confidence 0000000000 00224567999999999987652 1 1234566777775555666655
Q ss_pred cCCCCCCccc--ceeEEEeeCC---------CcCeEEEEEEEccCCCCCceeEEEEEeCcccccc
Q 001696 488 PTPTTNPLWN--EDLVFVAAEP---------FEEQLFLTVEDRVHASKDEVLGKISLPLHIFEKR 541 (1026)
Q Consensus 488 ~~~t~nP~wn--e~f~f~v~~~---------~~~~L~i~V~d~d~~~~d~~lG~~~i~l~~l~~~ 541 (1026)
+...+|.|. +.-.+.+... ....|.|.++. .+..||.+.|++..+...
T Consensus 238 -~~l~~~~f~~er~s~vRirSS~~~L~~yf~~~~~L~I~Lc~-----g~~~Lg~~~v~l~~Ll~~ 296 (340)
T PF12416_consen 238 -KSLSSPSFPPERASGVRIRSSLRVLRRYFQQIPKLQIHLCC-----GNQSLGSTSVPLQPLLPK 296 (340)
T ss_pred -cccCCCCcCeeeeeEEeecccHHHHHHHHhhCCCeEEEEee-----CCcEEEEEEEEhhhccCC
Confidence 466677553 3222443221 23466666665 377899999999998744
No 245
>PLN02964 phosphatidylserine decarboxylase
Probab=97.55 E-value=0.00011 Score=87.29 Aligned_cols=89 Identities=18% Similarity=0.246 Sum_probs=76.0
Q ss_pred CceEEEEEEEEEeEecCCCCCCCCCCcE-EEEEECCeEEEeeeecCCCCCCcccceeEEEeeCCCcCeEEEEEEEccCCC
Q 001696 445 PKLWYLRVNVIEAQDIVPNDRNRLPEGF-VKVQVGNQVLKTKICPTPTTNPLWNEDLVFVAAEPFEEQLFLTVEDRVHAS 523 (1026)
Q Consensus 445 p~~~~l~V~I~~a~~L~~~d~~~~~dpy-V~v~lg~~~~kT~~~~~~t~nP~wne~f~f~v~~~~~~~L~i~V~d~d~~~ 523 (1026)
+-.|.+.+++++|+ ++. .|+| +.+.+|.+++||.+. ++|.||+||+...|.+.........|.|||.++++
T Consensus 51 ~~~~~~~~~~~~~~----~~~---~~~~~~~~~~g~~~f~t~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 122 (644)
T PLN02964 51 DFSGIALLTLVGAE----MKF---KDKWLACVSFGEQTFRTETS-DSTDKPVWNSEKKLLLEKNGPHLARISVFETNRLS 122 (644)
T ss_pred cccCeEEEEeehhh----hcc---CCcEEEEEEecceeeeeccc-cccCCcccchhhceEeccCCcceEEEEEEecCCCC
Confidence 34567999999997 332 4887 566789999999999 79999999999999987776667899999999999
Q ss_pred CCceeEEEEEeCcccccc
Q 001696 524 KDEVLGKISLPLHIFEKR 541 (1026)
Q Consensus 524 ~d~~lG~~~i~l~~l~~~ 541 (1026)
.++++|.|+++|.++..+
T Consensus 123 ~n~lv~~~e~~~t~f~~k 140 (644)
T PLN02964 123 KNTLVGYCELDLFDFVTQ 140 (644)
T ss_pred HHHhhhheeecHhhccHH
Confidence 999999999999887754
No 246
>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]
Probab=97.46 E-value=0.0001 Score=79.32 Aligned_cols=117 Identities=21% Similarity=0.280 Sum_probs=93.8
Q ss_pred EEEEEEEEecCCCCCccCCCCCCcCcEEEEEE---C--CEEEEeeeecCCCCceeecEEEEEeeCC------------CC
Q 001696 613 ILEVGILGAQGLLPMKMKDGRGSTDAYCIAKY---G--QKWVRTRTILDTFNPKWNEQYTWEVYDP------------CT 675 (1026)
Q Consensus 613 ~L~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~---g--~~~~~T~~~~~t~~P~wne~~~~~v~~~------------~~ 675 (1026)
.|++.|+++++++.. .+....|.|+++++ + .++.+|.++++|.+|.|+|.|.+.+... ..
T Consensus 368 elel~ivrg~~~pvp---~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~ 444 (523)
T KOG3837|consen 368 ELELAIVRGQKNPVP---GGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRL 444 (523)
T ss_pred HhHHHHhhcccCCCC---CCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhc
Confidence 577888999988764 34456799999987 2 4568999999999999999999999752 12
Q ss_pred EEEEEEEeCCCCCCCCccCCCCCCCCCeeEEEEEEcccccCCceEeeeEeeeecCCCCCcc-CcEEEEEEEE
Q 001696 676 VITLGVFDNCHLGGGEKQNGSSAVRDSRIGKVRIRLSTLEAHRIYTHSYPLLVLHPHGVKK-MGELQLAIRF 746 (1026)
Q Consensus 676 ~l~i~v~d~~~~~~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~-~G~i~l~~~f 746 (1026)
-+.|++|....+ ...|.++|++.|.|..|++...+...|+|. .|++. .|.+++.++.
T Consensus 445 g~kfeifhkggf----------~rSdkl~gt~nikle~Len~cei~e~~~l~----DGRK~vGGkLevKvRi 502 (523)
T KOG3837|consen 445 GKKFEIFHKGGF----------NRSDKLTGTGNIKLEILENMCEICEYLPLK----DGRKAVGGKLEVKVRI 502 (523)
T ss_pred CeeEEEeecccc----------ccccceeceeeeeehhhhcccchhhceecc----ccccccCCeeEEEEEE
Confidence 489999996544 468999999999999999998888899997 34443 6888877765
No 247
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=97.44 E-value=0.00012 Score=61.61 Aligned_cols=96 Identities=10% Similarity=0.167 Sum_probs=70.3
Q ss_pred EEEEeecCCCccCC-CCCCCCCEEE--EEeCC-ceeeeccCCCCCCcccceeEEEeccCCCCCccceEEEEEeeCCCCCC
Q 001696 4 VVEVVDAYDLMPKD-GEGSASPFAE--VDFLN-QLSKTKTIPKNLNPVWNQKLLFDFDQTKSHNHLRIEVSIYHHERRPI 79 (1026)
Q Consensus 4 ~V~v~~a~~L~~~~-~~g~~dpyv~--v~~~~-~~~~T~~~~~t~nP~Wne~f~f~~~~~~~~~~~~L~~~V~d~d~~~~ 79 (1026)
-|+|+.|++|..-. ....+.-|++ +++.+ ...+|.++....||+|+|+|.|.+... .++.-.|.|.|++ ..
T Consensus 2 witv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~-qL~~V~L~fsv~~--~~-- 76 (103)
T cd08684 2 WITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFAIKLQ-NLQTVRLVFKIQT--QT-- 76 (103)
T ss_pred EEEEEEecccccccccCcCCeeEEEEEEecCCCccccchhhcCCCChhHHHHHHHHHHHh-hccceEEEEEeec--cC--
Confidence 47899999996433 2334445665 44555 567899999999999999999998753 3455789999999 32
Q ss_pred CCCccceeEEecCccccccCCceeEEe
Q 001696 80 PGRHFLGRVRIPCSNLVRKGEEVYQRF 106 (1026)
Q Consensus 80 ~~d~~lG~~~i~l~~l~~~~~~~~~w~ 106 (1026)
.+..-||.+.+.+.++-... ...|.
T Consensus 77 ~RKe~iG~~sL~l~s~geeE--~~HW~ 101 (103)
T cd08684 77 PRKRTIGECSLSLRTLSTQE--TDHWL 101 (103)
T ss_pred CccceeeEEEeecccCCHHH--hhhhh
Confidence 36789999999988876442 44553
No 248
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=97.40 E-value=0.0002 Score=60.31 Aligned_cols=87 Identities=15% Similarity=0.261 Sum_probs=66.3
Q ss_pred EEEEEeEecCCCC-CCCCCCcEEEEEE--CC-eEEEeeeecCCCCCCcccceeEEEeeCC--CcCeEEEEEEEccCCCCC
Q 001696 452 VNVIEAQDIVPND-RNRLPEGFVKVQV--GN-QVLKTKICPTPTTNPLWNEDLVFVAAEP--FEEQLFLTVEDRVHASKD 525 (1026)
Q Consensus 452 V~I~~a~~L~~~d-~~~~~dpyV~v~l--g~-~~~kT~~~~~~t~nP~wne~f~f~v~~~--~~~~L~i~V~d~d~~~~d 525 (1026)
+++++|+||.-.. .+..+..||+-.+ .+ ...||++. ....||.|+|+|.|.+... .+-.|.|+|+. ...+.
T Consensus 3 itv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~r-rgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~--~~~RK 79 (103)
T cd08684 3 ITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSAK-EGSNDIEFMETFVFAIKLQNLQTVRLVFKIQT--QTPRK 79 (103)
T ss_pred EEEEEecccccccccCcCCeeEEEEEEecCCCccccchhh-cCCCChhHHHHHHHHHHHhhccceEEEEEeec--cCCcc
Confidence 6889999997433 3344566776655 33 46788888 7999999999999987544 55578888887 45788
Q ss_pred ceeEEEEEeCcccccc
Q 001696 526 EVLGKISLPLHIFEKR 541 (1026)
Q Consensus 526 ~~lG~~~i~l~~l~~~ 541 (1026)
..||.|.+.++++-.+
T Consensus 80 e~iG~~sL~l~s~gee 95 (103)
T cd08684 80 RTIGECSLSLRTLSTQ 95 (103)
T ss_pred ceeeEEEeecccCCHH
Confidence 9999999999987644
No 249
>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.31 E-value=0.00022 Score=76.38 Aligned_cols=106 Identities=25% Similarity=0.378 Sum_probs=86.2
Q ss_pred ceEEEEeecCCCccCCCC-CCCCCEEEEEeCC-----ceeeeccCCCCCCcccceeEEEeccCCCCCccceEEEEEeeCC
Q 001696 2 KLVVEVVDAYDLMPKDGE-GSASPFAEVDFLN-----QLSKTKTIPKNLNPVWNQKLLFDFDQTKSHNHLRIEVSIYHHE 75 (1026)
Q Consensus 2 ~L~V~v~~a~~L~~~~~~-g~~dpyv~v~~~~-----~~~~T~~~~~t~nP~Wne~f~f~~~~~~~~~~~~L~~~V~d~d 75 (1026)
.|.|.|++|++|..+-.. ..++|||+|++-. .+.+|+...+|++|.+-+...|.-..+. ..|.++||. |
T Consensus 270 ~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~sp~~----k~Lq~tv~g-d 344 (405)
T KOG2060|consen 270 DLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQSPPG----KYLQGTVWG-D 344 (405)
T ss_pred ceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhccCCCc----cEEEEEEec-c
Confidence 378999999999776543 3789999999932 5778999999999999999999876665 689999998 3
Q ss_pred CCCCCCCccceeEEecCccccccCCceeEEeeccccc
Q 001696 76 RRPIPGRHFLGRVRIPCSNLVRKGEEVYQRFPLEKKW 112 (1026)
Q Consensus 76 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~ 112 (1026)
-.....+.|+|.+.+-+.++.........||+|-+.+
T Consensus 345 ygRmd~k~fmg~aqi~l~eL~ls~~~~igwyKlfgss 381 (405)
T KOG2060|consen 345 YGRMDHKSFMGVAQIMLDELNLSSSPVIGWYKLFGSS 381 (405)
T ss_pred ccccchHHHhhHHHHHhhhhccccccceeeeeccCCc
Confidence 3223467899999999999987776688999998754
No 250
>PLN02964 phosphatidylserine decarboxylase
Probab=97.28 E-value=0.00029 Score=83.63 Aligned_cols=88 Identities=17% Similarity=0.252 Sum_probs=75.6
Q ss_pred eeEEEEEEEEeecCCCCCCCCCCCcE-EEEEECCeeeEeeeecCCCCCeEeEEEEEEecCCCCCeEEEEEEeCCCCCCCc
Q 001696 284 MSYLYVRVVKAKDLPPSSITGSCDPY-VEVKMGNYKGRTKHFEKRMNPEWNQVFAFSKERIQSSMLEVFLKDKEMVGRDD 362 (1026)
Q Consensus 284 ~~~L~V~v~~a~~L~~~d~~g~~dpy-v~v~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~v~V~d~~~~~~d~ 362 (1026)
.|...+++++|+ ++. .|+| +.+.+|.+.+||.+.++|.||+||+...|.+.........|.|||.+.++.++
T Consensus 53 ~~~~~~~~~~~~----~~~---~~~~~~~~~~g~~~f~t~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~n~ 125 (644)
T PLN02964 53 SGIALLTLVGAE----MKF---KDKWLACVSFGEQTFRTETSDSTDKPVWNSEKKLLLEKNGPHLARISVFETNRLSKNT 125 (644)
T ss_pred cCeEEEEeehhh----hcc---CCcEEEEEEecceeeeeccccccCCcccchhhceEeccCCcceEEEEEEecCCCCHHH
Confidence 478999999998 332 4776 67788889999999999999999999999987666667899999999999999
Q ss_pred eeEEEEEEccccCCCC
Q 001696 363 YLGRVAFDLNEVPTRV 378 (1026)
Q Consensus 363 ~lG~~~i~l~~l~~~~ 378 (1026)
++|.|+++|.++...+
T Consensus 126 lv~~~e~~~t~f~~kq 141 (644)
T PLN02964 126 LVGYCELDLFDFVTQE 141 (644)
T ss_pred hhhheeecHhhccHHH
Confidence 9999999998876553
No 251
>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.28 E-value=0.00013 Score=78.09 Aligned_cols=106 Identities=22% Similarity=0.292 Sum_probs=87.5
Q ss_pred CceEEEEEEEEecCCCCCccCCCCCCcCcEEEEEE-CC----EEEEeeeecCCCCceeecEEEEEeeCCCCEEEEEEE-e
Q 001696 610 PVGILEVGILGAQGLLPMKMKDGRGSTDAYCIAKY-GQ----KWVRTRTILDTFNPKWNEQYTWEVYDPCTVITLGVF-D 683 (1026)
Q Consensus 610 ~~g~L~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~-g~----~~~~T~~~~~t~~P~wne~~~~~v~~~~~~l~i~v~-d 683 (1026)
..|.+.|.|++|++|.... ..+..++|||+|++ ++ .+.+|+...+|++|-+.++..|.-.-+...|.+.|| |
T Consensus 267 ~~g~l~vEii~ar~l~~k~--~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~sp~~k~Lq~tv~gd 344 (405)
T KOG2060|consen 267 SKGDLEVEIIRARGLVVKP--GSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQSPPGKYLQGTVWGD 344 (405)
T ss_pred ccCceeEEEEecccccccC--CcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhccCCCccEEEEEEecc
Confidence 3588999999999999852 22347999999987 22 348899999999999999999988888889999999 4
Q ss_pred CCCCCCCCccCCCCCCCCCeeEEEEEEcccccCCc-eEeeeEeeee
Q 001696 684 NCHLGGGEKQNGSSAVRDSRIGKVRIRLSTLEAHR-IYTHSYPLLV 728 (1026)
Q Consensus 684 ~~~~~~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~-~~~~~~~L~~ 728 (1026)
+.++ ..+.|+|.++|-|.+|.-.. ....||+|..
T Consensus 345 ygRm-----------d~k~fmg~aqi~l~eL~ls~~~~igwyKlfg 379 (405)
T KOG2060|consen 345 YGRM-----------DHKSFMGVAQIMLDELNLSSSPVIGWYKLFG 379 (405)
T ss_pred cccc-----------chHHHhhHHHHHhhhhccccccceeeeeccC
Confidence 4443 37899999999999998776 7799999984
No 252
>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]
Probab=96.62 E-value=0.00089 Score=72.32 Aligned_cols=122 Identities=19% Similarity=0.269 Sum_probs=89.7
Q ss_pred eEEEEeecCCCccCCCCCCCCCEEEEEe-----CCceeeeccCCCCCCcccceeEEEeccCCCC--------CccceEEE
Q 001696 3 LVVEVVDAYDLMPKDGEGSASPFAEVDF-----LNQLSKTKTIPKNLNPVWNQKLLFDFDQTKS--------HNHLRIEV 69 (1026)
Q Consensus 3 L~V~v~~a~~L~~~~~~g~~dpyv~v~~-----~~~~~~T~~~~~t~nP~Wne~f~f~~~~~~~--------~~~~~L~~ 69 (1026)
|.+.|+++.+++...+....|-||++.+ ..++.+|.+++.|.+|.|+|.|-..+..... +++..+.|
T Consensus 369 lel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~g~kf 448 (523)
T KOG3837|consen 369 LELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRLGKKF 448 (523)
T ss_pred hHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhcCeeE
Confidence 5566777777765544445688999988 2367788899999999999999999876211 13356999
Q ss_pred EEeeCCCCCCCCCccceeEEecCccccccCCceeEEeeccccccccccccccceeEEec
Q 001696 70 SIYHHERRPIPGRHFLGRVRIPCSNLVRKGEEVYQRFPLEKKWFLSSVKGEVGLKIYIS 128 (1026)
Q Consensus 70 ~V~d~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~ 128 (1026)
+||+ ...+..+|.++|.+.+-|+.|...-+ ....|+|.+. +..+-|.|.+++.+-
T Consensus 449 eifh-kggf~rSdkl~gt~nikle~Len~ce-i~e~~~l~DG--RK~vGGkLevKvRiR 503 (523)
T KOG3837|consen 449 EIFH-KGGFNRSDKLTGTGNIKLEILENMCE-ICEYLPLKDG--RKAVGGKLEVKVRIR 503 (523)
T ss_pred EEee-ccccccccceeceeeeeehhhhcccc-hhhceecccc--ccccCCeeEEEEEEe
Confidence 9999 55556789999999999887765433 4445777653 445678888888764
No 253
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=95.73 E-value=0.11 Score=50.41 Aligned_cols=127 Identities=18% Similarity=0.162 Sum_probs=88.2
Q ss_pred eeEEEEEEEEeecCCCCCC--CCCCC--cEEEEEECCeeeEeeeecCCCCCeEeEEEEEEecCCC-------------CC
Q 001696 284 MSYLYVRVVKAKDLPPSSI--TGSCD--PYVEVKMGNYKGRTKHFEKRMNPEWNQVFAFSKERIQ-------------SS 346 (1026)
Q Consensus 284 ~~~L~V~v~~a~~L~~~d~--~g~~d--pyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~-------------~~ 346 (1026)
...|.|+|..++-....-. .+..+ -.+.+.+++++++|+.+..+.+|.|+|.|.|.+.... ..
T Consensus 8 ~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~QRF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~~~ 87 (156)
T PF15627_consen 8 RRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRGQRFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLSISD 87 (156)
T ss_pred ceEEEEEEeCchhHhhhhhccCCCCceEEEEEEEecCceEecCCcccccCCCCCCcEEEEecccccccccchhHhhcCCC
Confidence 3579999999886543211 12233 3455667899999999999999999999999874321 36
Q ss_pred eEEEEEEeCCCCCCCceeEEEEEEccccCCCCCCCCCCCCEEEEeecCCCCC-cccceEEEEEEeccc
Q 001696 347 MLEVFLKDKEMVGRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLEDRRGEG-KVRGQTMLAIWMGTQ 413 (1026)
Q Consensus 347 ~L~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~-~~~G~i~l~~~~~~~ 413 (1026)
.|.+.|.--+..+...++|+..++-..+....... ...-..|.....+. ...|-|.+++.+.+.
T Consensus 88 pihivli~~d~~~~~~Lv~s~~ldWR~vL~s~~~~---~~~~vEL~G~~~e~kv~~GiL~l~lELlP~ 152 (156)
T PF15627_consen 88 PIHIVLIRTDPSGETTLVGSHFLDWRKVLCSGNGS---TSFTVELCGVGPESKVPVGILDLRLELLPN 152 (156)
T ss_pred ceEEEEEEecCCCceEeeeeceehHHHHhccCCCc---cceeEEEeccCCCCccceeEEEEEEEeecC
Confidence 78888888777777789999999888877654321 01344555554432 367888888866543
No 254
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=95.72 E-value=0.034 Score=65.89 Aligned_cols=96 Identities=22% Similarity=0.291 Sum_probs=75.7
Q ss_pred EEEEEEEEEeEecCCCCCCCCCCcEEEEEEC-------CeEEEeeeecCCCCCCcccce-eEEE-eeCCCcCeEEEEEEE
Q 001696 448 WYLRVNVIEAQDIVPNDRNRLPEGFVKVQVG-------NQVLKTKICPTPTTNPLWNED-LVFV-AAEPFEEQLFLTVED 518 (1026)
Q Consensus 448 ~~l~V~I~~a~~L~~~d~~~~~dpyV~v~lg-------~~~~kT~~~~~~t~nP~wne~-f~f~-v~~~~~~~L~i~V~d 518 (1026)
+.+.|+|++|.-|..++ ...||+|.+- .+.++|+++..++.||+|+|. |.|. |.-|.-..|+|.||+
T Consensus 703 ~t~sV~VISgqFLSdrk----vgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRiavye 778 (1189)
T KOG1265|consen 703 ATLSVTVISGQFLSDRK----VGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIAVYE 778 (1189)
T ss_pred eeEEEEEEeeeeccccc----cCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhheeeeeec
Confidence 36999999999997655 4589999982 256789998789999999976 7775 555566789999999
Q ss_pred ccCCCCCceeEEEEEeCcccccccCCCCccceeEEcccCC
Q 001696 519 RVHASKDEVLGKISLPLHIFEKRLDHRPVHSRWFNLEKFG 558 (1026)
Q Consensus 519 ~d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~~~~ 558 (1026)
. .+.+||+-.+++..|.. .-+.+.|....
T Consensus 779 E----ggK~ig~RIlpvd~l~~-------GYrhv~LRse~ 807 (1189)
T KOG1265|consen 779 E----GGKFIGQRILPVDGLNA-------GYRHVCLRSES 807 (1189)
T ss_pred c----CCceeeeeccchhcccC-------cceeEEecCCC
Confidence 6 46799999999998864 34567777653
No 255
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=95.65 E-value=0.055 Score=64.28 Aligned_cols=109 Identities=17% Similarity=0.250 Sum_probs=79.3
Q ss_pred eeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-------eeeEeeeecC-CCCCeEeEE-EEEE-ecCCCCCeEEEEEE
Q 001696 284 MSYLYVRVVKAKDLPPSSITGSCDPYVEVKMGN-------YKGRTKHFEK-RMNPEWNQV-FAFS-KERIQSSMLEVFLK 353 (1026)
Q Consensus 284 ~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~-------~~~kT~~~~~-t~nP~wne~-f~f~-v~~~~~~~L~v~V~ 353 (1026)
.+.+.|+|+++.-|..++ ...||.|.+-+ ..++|++..+ +.||+|+|. |.|. |--+.-..|+|-||
T Consensus 702 A~t~sV~VISgqFLSdrk----vgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRiavy 777 (1189)
T KOG1265|consen 702 AATLSVTVISGQFLSDRK----VGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIAVY 777 (1189)
T ss_pred EeeEEEEEEeeeeccccc----cCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhheeeeee
Confidence 457899999999998765 45899999865 3578888765 779999976 7776 33333478999999
Q ss_pred eCCCCCCCceeEEEEEEccccCCCCCCCCCCCCEEEEeecCCCCCcccceEEEEE
Q 001696 354 DKEMVGRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLEDRRGEGKVRGQTMLAI 408 (1026)
Q Consensus 354 d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~ 408 (1026)
+.+ ..+||+-.+++..+..+- +.+.|....+..-....|.+.+
T Consensus 778 eEg----gK~ig~RIlpvd~l~~GY--------rhv~LRse~Nqpl~lp~Lfv~i 820 (1189)
T KOG1265|consen 778 EEG----GKFIGQRILPVDGLNAGY--------RHVCLRSESNQPLTLPALFVYI 820 (1189)
T ss_pred ccC----CceeeeeccchhcccCcc--------eeEEecCCCCCccccceeEEEE
Confidence 974 579999999999988763 5667766554322334455444
No 256
>PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins. It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO).
Probab=95.54 E-value=0.06 Score=52.15 Aligned_cols=49 Identities=18% Similarity=0.344 Sum_probs=40.0
Q ss_pred hhhHHHHHHHHHHHHhHHHHHHHhhccccccCchhHHHHHHHHHHHHHh
Q 001696 818 RRSKANFFRVMSLLSGMISVSRWFTDICNWRNPVTAVLVHILFLILIWY 866 (1026)
Q Consensus 818 ~~~~~n~~Rl~~~~~~~~~~~~~i~~~~~W~~p~~s~~~~~~~~~~~~~ 866 (1026)
.+++.=..|++.++..+-..+..++.+++|++|..|.++.+++++++.-
T Consensus 62 drlr~va~rvQ~vlgd~At~gERl~allsWrdP~aT~lf~~~clv~avv 110 (156)
T PF08372_consen 62 DRLRSVAGRVQNVLGDVATQGERLQALLSWRDPRATALFVVFCLVAAVV 110 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccHHHHHHHHHHHHHHH
Confidence 3455556788888889999999999999999999999988777665543
No 257
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=95.50 E-value=0.2 Score=48.54 Aligned_cols=96 Identities=13% Similarity=0.187 Sum_probs=72.3
Q ss_pred CceEEEEEEEEEeEecCCCCCC--CCCCcEEE--EEECCeEEEeeeecCCCCCCcccceeEEEeeCCC------------
Q 001696 445 PKLWYLRVNVIEAQDIVPNDRN--RLPEGFVK--VQVGNQVLKTKICPTPTTNPLWNEDLVFVAAEPF------------ 508 (1026)
Q Consensus 445 p~~~~l~V~I~~a~~L~~~d~~--~~~dpyV~--v~lg~~~~kT~~~~~~t~nP~wne~f~f~v~~~~------------ 508 (1026)
|...+|.++|..++-....-.. +..+.-+. +.+++|.++|+.+ ..+.+|.|+|.|-|.+....
T Consensus 6 ~~~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~QRF~S~~V-p~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls 84 (156)
T PF15627_consen 6 PGRRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRGQRFRSKPV-PCACEPDFNEEFLFELPRDSFGAGSTATTLLS 84 (156)
T ss_pred CCceEEEEEEeCchhHhhhhhccCCCCceEEEEEEEecCceEecCCc-ccccCCCCCCcEEEEecccccccccchhHhhc
Confidence 4455799999999875422111 33444444 4459999999999 69999999999999985542
Q ss_pred -cCeEEEEEEEccCCCCCceeEEEEEeCcccccc
Q 001696 509 -EEQLFLTVEDRVHASKDEVLGKISLPLHIFEKR 541 (1026)
Q Consensus 509 -~~~L~i~V~d~d~~~~d~~lG~~~i~l~~l~~~ 541 (1026)
.+.|.+.|.-.|..+...++|+-.+++..+...
T Consensus 85 ~~~pihivli~~d~~~~~~Lv~s~~ldWR~vL~s 118 (156)
T PF15627_consen 85 ISDPIHIVLIRTDPSGETTLVGSHFLDWRKVLCS 118 (156)
T ss_pred CCCceEEEEEEecCCCceEeeeeceehHHHHhcc
Confidence 346888888887777779999999999998765
No 258
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=95.40 E-value=0.078 Score=52.09 Aligned_cols=107 Identities=19% Similarity=0.226 Sum_probs=70.5
Q ss_pred CceEEEEeecCCCccCCCCCCCCCEEEEEe--CCc----eeeeccCCCCCCcccceeEEEeccCCCCCccceEEEEEeeC
Q 001696 1 MKLVVEVVDAYDLMPKDGEGSASPFAEVDF--LNQ----LSKTKTIPKNLNPVWNQKLLFDFDQTKSHNHLRIEVSIYHH 74 (1026)
Q Consensus 1 ~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~--~~~----~~~T~~~~~t~nP~Wne~f~f~~~~~~~~~~~~L~~~V~d~ 74 (1026)
+.++|+|++++++.-. ..+|-||.+.+ ++. ...|+-+. ..++.|||...|++.-.+--.+..|.|+||+.
T Consensus 8 ~~~~v~i~~~~~~~~~---~~~~l~V~v~l~~g~~~L~~pv~T~~v~-~~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~ 83 (158)
T cd08398 8 SNLRIKILCATYVNVN---DIDKIYVRTGIYHGGEPLCDNVNTQRVP-CSNPRWNEWLDYDIYIPDLPRSARLCLSICSV 83 (158)
T ss_pred CCeEEEEEeeccCCCC---CcCeEEEEEEEEECCEEccCeeEecccC-CCCCccceeEEcccchhcCChhheEEEEEEEE
Confidence 3589999999999653 34688998877 442 22444444 36799999999987644434557899999994
Q ss_pred CCCCC--CCCccceeEEecCccccccCCceeEEeeccccccccccccccceeEEec
Q 001696 75 ERRPI--PGRHFLGRVRIPCSNLVRKGEEVYQRFPLEKKWFLSSVKGEVGLKIYIS 128 (1026)
Q Consensus 75 d~~~~--~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~ 128 (1026)
..... .....+|.+.++|-+-. . .| .+|...+.++..
T Consensus 84 ~~~~~~k~~~~~iG~~ni~LFd~~---~------~L--------r~G~~~L~lW~~ 122 (158)
T cd08398 84 KGRKGAKEEHCPLAWGNINLFDYT---D------TL--------VSGKMALNLWPV 122 (158)
T ss_pred ecccCCCCceEEEEEEEEEEECCC---C------hh--------hCCCEEEEEEcC
Confidence 43211 12246899998855421 1 11 158888888754
No 259
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=95.26 E-value=0.088 Score=52.77 Aligned_cols=91 Identities=18% Similarity=0.264 Sum_probs=60.9
Q ss_pred ceEEEEeecCCCccCCCCCCCCCEEEEEe--CCc----eeeeccCCCCCCcccceeEEEeccCCCCCccceEEEEEeeCC
Q 001696 2 KLVVEVVDAYDLMPKDGEGSASPFAEVDF--LNQ----LSKTKTIPKNLNPVWNQKLLFDFDQTKSHNHLRIEVSIYHHE 75 (1026)
Q Consensus 2 ~L~V~v~~a~~L~~~~~~g~~dpyv~v~~--~~~----~~~T~~~~~t~nP~Wne~f~f~~~~~~~~~~~~L~~~V~d~d 75 (1026)
.+.|+|+++.+|.. .....+-||.+.+ ++. ...|+.+.-..++.|||.+.|++.-.+--.+..|.|.||+..
T Consensus 9 ~f~i~i~~~~~~~~--~~~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~~ 86 (173)
T cd08693 9 KFSITLHKISNLNA--AERTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYEVS 86 (173)
T ss_pred CEEEEEEEeccCcc--CCCCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEEec
Confidence 58899999999975 2234667777766 442 345655555577999999999875444334578999999943
Q ss_pred CCCC--------------CCCccceeEEecCcc
Q 001696 76 RRPI--------------PGRHFLGRVRIPCSN 94 (1026)
Q Consensus 76 ~~~~--------------~~d~~lG~~~i~l~~ 94 (1026)
.... ..+..||.+.++|-+
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd 119 (173)
T cd08693 87 KKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFD 119 (173)
T ss_pred ccccccccccccccccccCcceEEEEEeEEEEc
Confidence 3210 123577777777544
No 260
>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=94.93 E-value=0.061 Score=56.37 Aligned_cols=114 Identities=11% Similarity=0.138 Sum_probs=76.0
Q ss_pred ceEEEEeecCCCcc--CCCCCCCCCEEEEEeCC-ceeeeccCCCCCCcccceeEEEeccCCCCCccceEEEEEeeCCCCC
Q 001696 2 KLVVEVVDAYDLMP--KDGEGSASPFAEVDFLN-QLSKTKTIPKNLNPVWNQKLLFDFDQTKSHNHLRIEVSIYHHERRP 78 (1026)
Q Consensus 2 ~L~V~v~~a~~L~~--~~~~g~~dpyv~v~~~~-~~~~T~~~~~t~nP~Wne~f~f~~~~~~~~~~~~L~~~V~d~d~~~ 78 (1026)
.|.+++..+|+|+- +..+-+-+-||++.++. ++-+|.+......=.|.|+|..++.+.+ .+.+-||.|+...
T Consensus 52 iL~~H~~~GRGLr~~p~~kglt~~~ycVle~drqh~aRt~vrs~~~~f~w~e~F~~Dvv~~~-----vl~~lvySW~pq~ 126 (442)
T KOG1452|consen 52 ILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPDRQHPARTRVRSSGPGFAWAEDFKHDVVNIE-----VLHYLVYSWPPQR 126 (442)
T ss_pred eEEEEEecccccccChhccCceeeeeeeeeecccCccccccccCCCCccchhhceeecccce-----eeeEEEeecCchh
Confidence 47799999999963 33455788999999976 5667777766667789999999988754 8999999998865
Q ss_pred CCCCccceeEEecCccccccCCceeEEeeccccccccccccccceeEEecC
Q 001696 79 IPGRHFLGRVRIPCSNLVRKGEEVYQRFPLEKKWFLSSVKGEVGLKIYISP 129 (1026)
Q Consensus 79 ~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~ 129 (1026)
..+-..+| .+.+..+.........-..|++ +|.+-+++-+.+
T Consensus 127 RHKLC~~g--~l~~~~v~rqspd~~~Al~leP-------rgq~~~r~~~~D 168 (442)
T KOG1452|consen 127 RHKLCHLG--LLEAFVVDRQSPDRVVALYLEP-------RGQPPLRLPLAD 168 (442)
T ss_pred hccccccc--hhhhhhhhhcCCcceeeeeccc-------CCCCceecccCC
Confidence 22333455 3333333322221112245554 577877776544
No 261
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=94.90 E-value=0.16 Score=50.89 Aligned_cols=86 Identities=17% Similarity=0.275 Sum_probs=60.5
Q ss_pred EEEEEEEEeEecCCCCCCCCCCcEEEEEE--CCeEE----EeeeecCCCCCCcccceeEEEee---CCCcCeEEEEEEEc
Q 001696 449 YLRVNVIEAQDIVPNDRNRLPEGFVKVQV--GNQVL----KTKICPTPTTNPLWNEDLVFVAA---EPFEEQLFLTVEDR 519 (1026)
Q Consensus 449 ~l~V~I~~a~~L~~~d~~~~~dpyV~v~l--g~~~~----kT~~~~~~t~nP~wne~f~f~v~---~~~~~~L~i~V~d~ 519 (1026)
.++|+|+.+.+|.. .....+-||++.+ |++.. .|+.+ .-...+.|||.+.|++. -|.+..|.|+||+.
T Consensus 9 ~f~i~i~~~~~~~~--~~~~~~l~V~~~lyhG~~~L~~p~~T~~~-~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~ 85 (173)
T cd08693 9 KFSITLHKISNLNA--AERTMKVGVQAGLFHGGESLCKTVKTSEV-SGKNDPVWNETLEFDINVCDLPRMARLCFAIYEV 85 (173)
T ss_pred CEEEEEEEeccCcc--CCCCceEEEEEEEEECCEEccCceEcccc-CCCCccccceeEEcccchhcCChhHeEEEEEEEe
Confidence 48999999999986 2234577888755 76643 55555 23567999999999752 34677999999997
Q ss_pred cCCC----------------CCceeEEEEEeCcc
Q 001696 520 VHAS----------------KDEVLGKISLPLHI 537 (1026)
Q Consensus 520 d~~~----------------~d~~lG~~~i~l~~ 537 (1026)
.... ....||.+.++|-+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd 119 (173)
T cd08693 86 SKKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFD 119 (173)
T ss_pred cccccccccccccccccccCcceEEEEEeEEEEc
Confidence 5321 24677887777765
No 262
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=94.70 E-value=0.22 Score=48.91 Aligned_cols=83 Identities=25% Similarity=0.346 Sum_probs=60.6
Q ss_pred EEEEEEEeEecCCCCCCCCCCcEEEEEE--CCeEE----EeeeecCCCCCCcccceeEEEee---CCCcCeEEEEEEEcc
Q 001696 450 LRVNVIEAQDIVPNDRNRLPEGFVKVQV--GNQVL----KTKICPTPTTNPLWNEDLVFVAA---EPFEEQLFLTVEDRV 520 (1026)
Q Consensus 450 l~V~I~~a~~L~~~d~~~~~dpyV~v~l--g~~~~----kT~~~~~~t~nP~wne~f~f~v~---~~~~~~L~i~V~d~d 520 (1026)
++|+|+++.++...+ ..|-||++.+ |++.. .|+.+ ...++.|||-.+|++. -|....|.|+||+..
T Consensus 10 ~~v~i~~~~~~~~~~---~~~l~V~v~l~~g~~~L~~pv~T~~v--~~~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~~ 84 (158)
T cd08398 10 LRIKILCATYVNVND---IDKIYVRTGIYHGGEPLCDNVNTQRV--PCSNPRWNEWLDYDIYIPDLPRSARLCLSICSVK 84 (158)
T ss_pred eEEEEEeeccCCCCC---cCeEEEEEEEEECCEEccCeeEeccc--CCCCCccceeEEcccchhcCChhheEEEEEEEEe
Confidence 899999999987632 3578888866 66543 45544 2468999999999763 236779999999975
Q ss_pred CCC----CCceeEEEEEeCcc
Q 001696 521 HAS----KDEVLGKISLPLHI 537 (1026)
Q Consensus 521 ~~~----~d~~lG~~~i~l~~ 537 (1026)
... ....+|.+.++|-+
T Consensus 85 ~~~~~k~~~~~iG~~ni~LFd 105 (158)
T cd08398 85 GRKGAKEEHCPLAWGNINLFD 105 (158)
T ss_pred cccCCCCceEEEEEEEEEEEC
Confidence 421 23568999988876
No 263
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=94.51 E-value=0.16 Score=50.30 Aligned_cols=92 Identities=21% Similarity=0.280 Sum_probs=61.0
Q ss_pred ceEEEEeecCCCccCCCCCCCCCEEEEEe--CCc----eeeeccCCCCCCcccceeEEEeccCCCCCccceEEEEEeeCC
Q 001696 2 KLVVEVVDAYDLMPKDGEGSASPFAEVDF--LNQ----LSKTKTIPKNLNPVWNQKLLFDFDQTKSHNHLRIEVSIYHHE 75 (1026)
Q Consensus 2 ~L~V~v~~a~~L~~~~~~g~~dpyv~v~~--~~~----~~~T~~~~~t~nP~Wne~f~f~~~~~~~~~~~~L~~~V~d~d 75 (1026)
.++|+|.+..++...+ ....+-||.+.+ ++. ...|.....+.++.|||...|++.-.+--.+..|.|.||+.+
T Consensus 9 ~~~i~i~~~~~~~~~~-~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~~ 87 (156)
T cd08380 9 NLRIKIHGITNINLLD-SEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAVS 87 (156)
T ss_pred CeEEEEEeeccccccC-CCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEEe
Confidence 5788999988886511 234666777766 432 334444444478999999999965443334578999999943
Q ss_pred CCCCCCCccceeEEecCcc
Q 001696 76 RRPIPGRHFLGRVRIPCSN 94 (1026)
Q Consensus 76 ~~~~~~d~~lG~~~i~l~~ 94 (1026)
......+..||.+.++|-+
T Consensus 88 ~~~~~~~~~iG~~~~~lFd 106 (156)
T cd08380 88 EPGSKKEVPLGWVNVPLFD 106 (156)
T ss_pred cCCCCcceEEEEEeEEeEc
Confidence 3211145799999999655
No 264
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=94.49 E-value=0.81 Score=44.39 Aligned_cols=114 Identities=19% Similarity=0.240 Sum_probs=77.4
Q ss_pred EEEEEEEEecCCCCCccCCCCCCcCcEEEEEECCEE---EEeeee-cCCCCceeecEEEEEeeC---C------CCEEEE
Q 001696 613 ILEVGILGAQGLLPMKMKDGRGSTDAYCIAKYGQKW---VRTRTI-LDTFNPKWNEQYTWEVYD---P------CTVITL 679 (1026)
Q Consensus 613 ~L~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~g~~~---~~T~~~-~~t~~P~wne~~~~~v~~---~------~~~l~i 679 (1026)
.+.|.|++..+++.. ....||+.+.|... ..|... ..+..-.|||.|.+++.. . ...+.|
T Consensus 8 ~~~l~i~~l~~~p~~-------~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~ 80 (143)
T PF10358_consen 8 QFDLTIHELENLPSS-------NGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKF 80 (143)
T ss_pred EEEEEEEEeECcCCC-------CCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEE
Confidence 578899999988752 33456666666553 455544 356678999999998852 2 125889
Q ss_pred EEEeCCCCCCCCccCCCCCCCCCeeEEEEEEcccccC--CceEeeeEeeeecCCCCCccCcEEEEEEEEee
Q 001696 680 GVFDNCHLGGGEKQNGSSAVRDSRIGKVRIRLSTLEA--HRIYTHSYPLLVLHPHGVKKMGELQLAIRFTI 748 (1026)
Q Consensus 680 ~v~d~~~~~~~~~~~~~~~~~~~~lG~~~i~l~~l~~--~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~~ 748 (1026)
.|+....-+ +...||++.|+|++..+ .......++|... .+....++|.+.+..
T Consensus 81 ~v~~~~~~~-----------~k~~lG~~~inLaey~~~~~~~~~~~~~l~~~----~~~~a~L~isi~~~~ 136 (143)
T PF10358_consen 81 SVFEVDGSG-----------KKKVLGKVSINLAEYANEDEEPITVRLLLKKC----KKSNATLSISISLSE 136 (143)
T ss_pred EEEEecCCC-----------ccceEEEEEEEHHHhhCcCCCcEEEEEeCccC----CCCCcEEEEEEEEEE
Confidence 998864211 23689999999999876 3566778888632 133467888877654
No 265
>PF02453 Reticulon: Reticulon; InterPro: IPR003388 Eukaryotic proteins of the reticulon (RTN) family all share an association with the endoplasmic reticulum (ER). Whereas amino-terminal regions are not related to one another, all reticulon proteins share a 200 amino acid residue region of sequence similarity at the C-terminal. This region contains two large hydrophobic regions separated by a 66 residue hydrophilic segment. The conserved hydrophobic C-terminal portion has been shown to play an essential role in the association of reticulons with the ER membrane. The hydrophobic portions are supposed to be membrane-embedded and the hydrophilic 66 residue localized to the lumenal/extracellular face of the membrane. Most reticulons have a di-lysine ER retention motif at the C-terminal. Because of their likely association with the rough as well as the smooth ER, the reticulons might play some role in transport processes or in regulation of intracellular calcium levels. It has been suggested that the reticulons may be serving as ER-associated channel-like complexes [, , , ].; GO: 0005783 endoplasmic reticulum; PDB: 2KO2_A 2JV5_A 2G31_A.
Probab=94.42 E-value=0.015 Score=58.42 Aligned_cols=65 Identities=14% Similarity=0.071 Sum_probs=17.0
Q ss_pred HHHhhhHhHhhhccccCchhHHHHHHHHHHHHHHHhhhhhHHHHHHHhhhhhcCCCCCCCCCCch
Q 001696 947 DIATQGERFQSLLSWRDPRATALFILFSLCAAMVLYTTPFKVVALLAGLYYLRHPRFRSKLPSVP 1011 (1026)
Q Consensus 947 ~~a~~le~~~~l~~w~~p~~t~~~~~~l~~~~i~l~~iP~r~i~l~~g~~~~r~P~~~~~~p~~~ 1011 (1026)
.++..+..++.++.|+||..|..++++|++++.+.-+++...++.+..+..+-=|.+..+....+
T Consensus 92 ~~n~~~~~~~~l~~~~~~~~~l~~~~~l~~l~~lg~~~s~~~L~~l~~~~~f~~P~ly~~~~~~I 156 (169)
T PF02453_consen 92 WINSVLSWLRRLVFGEDPKKSLKVFVVLYILSFLGSWFSFLTLLYLGVLGAFTVPKLYEKYQEEI 156 (169)
T ss_dssp CCCHHHHHHHCCCHCT-TTGGG-------------------------------------------
T ss_pred HHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 44455778888999999999999999999888888888887766665555555565554444433
No 266
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=93.79 E-value=0.45 Score=46.93 Aligned_cols=93 Identities=19% Similarity=0.305 Sum_probs=65.2
Q ss_pred CCCcEEEEEE--CCe----eeEeeeecCCCCCeEeEEEEEEec--C-CCCCeEEEEEEeCCCCCCCceeEEEEEEccccC
Q 001696 305 SCDPYVEVKM--GNY----KGRTKHFEKRMNPEWNQVFAFSKE--R-IQSSMLEVFLKDKEMVGRDDYLGRVAFDLNEVP 375 (1026)
Q Consensus 305 ~~dpyv~v~~--~~~----~~kT~~~~~t~nP~wne~f~f~v~--~-~~~~~L~v~V~d~~~~~~d~~lG~~~i~l~~l~ 375 (1026)
.++-||.+.+ +++ ...|..+.-+..+.|||...|++. + +.+..|.|+||+....+....+|.++++|-+-.
T Consensus 29 ~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd~~ 108 (159)
T cd08397 29 NSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFNKD 108 (159)
T ss_pred CCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeECCC
Confidence 4677777755 333 235555555667899999999863 3 347899999999876656779999999987642
Q ss_pred CCCCCCCCCCCEEEEeecCCCCCcccceEEEEEEecccCchhh
Q 001696 376 TRVPPDSPLAPQWYRLEDRRGEGKVRGQTMLAIWMGTQADEAF 418 (1026)
Q Consensus 376 ~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~~~d~~~ 418 (1026)
+ .| ..|...+.+|....+|+..
T Consensus 109 -g------------~L--------r~G~~~l~lw~~~~~d~~~ 130 (159)
T cd08397 109 -G------------TL--------RRGRQKLRVWPDVEADGSI 130 (159)
T ss_pred -C------------cE--------ecCCEEEEEEeCCCCCCcc
Confidence 1 11 2488888898877766543
No 267
>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=93.72 E-value=0.13 Score=53.99 Aligned_cols=75 Identities=20% Similarity=0.223 Sum_probs=57.1
Q ss_pred CceEEEEEEEEecCCCCCccCCCCCCcCcEEEEEECC-EEEEeeeecCCCCceeecEEEEEeeCCCCEEEEEEEeCCC
Q 001696 610 PVGILEVGILGAQGLLPMKMKDGRGSTDAYCIAKYGQ-KWVRTRTILDTFNPKWNEQYTWEVYDPCTVITLGVFDNCH 686 (1026)
Q Consensus 610 ~~g~L~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~g~-~~~~T~~~~~t~~P~wne~~~~~v~~~~~~l~i~v~d~~~ 686 (1026)
..|.|.++++.++||..... ..+-..+-||+++++. ...||.+......-.|.|.|+.++.... ++.+-||.|+.
T Consensus 49 ~tGiL~~H~~~GRGLr~~p~-~kglt~~~ycVle~drqh~aRt~vrs~~~~f~w~e~F~~Dvv~~~-vl~~lvySW~p 124 (442)
T KOG1452|consen 49 STGILYFHAYNGRGLRMTPQ-QKGLTVCFYCVLEPDRQHPARTRVRSSGPGFAWAEDFKHDVVNIE-VLHYLVYSWPP 124 (442)
T ss_pred ccceEEEEEecccccccChh-ccCceeeeeeeeeecccCccccccccCCCCccchhhceeecccce-eeeEEEeecCc
Confidence 34899999999999986532 2233679999999974 4677777777777789999999887543 47788888875
No 268
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=93.51 E-value=1.4 Score=42.73 Aligned_cols=105 Identities=20% Similarity=0.246 Sum_probs=70.3
Q ss_pred eEEEEEEEEEeEecCCCCCCCCCCcEEEEEECCeE---EEeeeecCCCCCCcccceeEEEeeC--------CCcCeEEEE
Q 001696 447 LWYLRVNVIEAQDIVPNDRNRLPEGFVKVQVGNQV---LKTKICPTPTTNPLWNEDLVFVAAE--------PFEEQLFLT 515 (1026)
Q Consensus 447 ~~~l~V~I~~a~~L~~~d~~~~~dpyV~v~lg~~~---~kT~~~~~~t~nP~wne~f~f~v~~--------~~~~~L~i~ 515 (1026)
...+.|+|++..+++.. ....||+..-|+.. ..|....-....-.|||.|.+.+.- .....+.|.
T Consensus 6 kf~~~l~i~~l~~~p~~----~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~ 81 (143)
T PF10358_consen 6 KFQFDLTIHELENLPSS----NGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKFS 81 (143)
T ss_pred eEEEEEEEEEeECcCCC----CCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEE
Confidence 35789999999998872 23455666666653 5555553456678999999997632 134478899
Q ss_pred EEEccCCCCCceeEEEEEeCcccccccCCCCccceeEEcccC
Q 001696 516 VEDRVHASKDEVLGKISLPLHIFEKRLDHRPVHSRWFNLEKF 557 (1026)
Q Consensus 516 V~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~~~ 557 (1026)
|+.....++...+|.+.|+|+++.... ......-++|...
T Consensus 82 v~~~~~~~~k~~lG~~~inLaey~~~~--~~~~~~~~~l~~~ 121 (143)
T PF10358_consen 82 VFEVDGSGKKKVLGKVSINLAEYANED--EEPITVRLLLKKC 121 (143)
T ss_pred EEEecCCCccceEEEEEEEHHHhhCcC--CCcEEEEEeCccC
Confidence 988743233369999999999987642 1234455667665
No 269
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=93.48 E-value=0.47 Score=46.89 Aligned_cols=87 Identities=29% Similarity=0.374 Sum_probs=60.7
Q ss_pred EEEEEEEeEecCCCCCCCCCCcEEEEEE--CCeE----EEeeeecCCCCCCcccceeEEEee---CCCcCeEEEEEEEcc
Q 001696 450 LRVNVIEAQDIVPNDRNRLPEGFVKVQV--GNQV----LKTKICPTPTTNPLWNEDLVFVAA---EPFEEQLFLTVEDRV 520 (1026)
Q Consensus 450 l~V~I~~a~~L~~~d~~~~~dpyV~v~l--g~~~----~kT~~~~~~t~nP~wne~f~f~v~---~~~~~~L~i~V~d~d 520 (1026)
++|.|....++...+ ....+-||++.+ |++. ..|+.. ....++.|||...|++. -|.+..|.|+||+.+
T Consensus 10 ~~i~i~~~~~~~~~~-~~~~~l~V~~~l~~g~~~l~~~~~t~~~-~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~~ 87 (156)
T cd08380 10 LRIKIHGITNINLLD-SEDLKLYVRVQLYHGGEPLCPPQSTKKV-PFSTSVTWNEWLTFDILISDLPREARLCLSIYAVS 87 (156)
T ss_pred eEEEEEeeccccccC-CCceeEEEEEEEEECCEEccCceeccCC-cCCCCCcccceeEccchhhcCChhheEEEEEEEEe
Confidence 788888888876511 223567777765 6653 234333 23368999999999752 346779999999986
Q ss_pred CCC--CCceeEEEEEeCccc
Q 001696 521 HAS--KDEVLGKISLPLHIF 538 (1026)
Q Consensus 521 ~~~--~d~~lG~~~i~l~~l 538 (1026)
... .+..||.+.++|-+.
T Consensus 88 ~~~~~~~~~iG~~~~~lFd~ 107 (156)
T cd08380 88 EPGSKKEVPLGWVNVPLFDY 107 (156)
T ss_pred cCCCCcceEEEEEeEEeEcc
Confidence 543 468999999998764
No 270
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=93.24 E-value=0.85 Score=45.67 Aligned_cols=97 Identities=20% Similarity=0.214 Sum_probs=60.3
Q ss_pred EEEEEEEEecCCCCCccCCCCCCcCcEEEEE--ECCEE---EEeeeecCCCCceeecEEEEEee--C-C-CCEEEEEEEe
Q 001696 613 ILEVGILGAQGLLPMKMKDGRGSTDAYCIAK--YGQKW---VRTRTILDTFNPKWNEQYTWEVY--D-P-CTVITLGVFD 683 (1026)
Q Consensus 613 ~L~v~v~~a~~L~~~~~~~~~~~~dpyv~v~--~g~~~---~~T~~~~~t~~P~wne~~~~~v~--~-~-~~~l~i~v~d 683 (1026)
.++|.|+++.. +.. +......-||++. .|+.. .+|..+.-+.++.|||-++|+|. + | ...|.|+||+
T Consensus 11 ~friki~~~~~-~~~---~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~ 86 (178)
T cd08399 11 KFRVKILGIDI-PVL---PRNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYC 86 (178)
T ss_pred CEEEEEEeecc-cCc---CCCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEE
Confidence 57788888863 332 1122234556553 36554 36666666778999999999886 3 3 6689999999
Q ss_pred CCCCC-----CCCccCCCCCCCCCeeEEEEEEccc
Q 001696 684 NCHLG-----GGEKQNGSSAVRDSRIGKVRIRLST 713 (1026)
Q Consensus 684 ~~~~~-----~~~~~~~~~~~~~~~lG~~~i~l~~ 713 (1026)
..... .|.+..+...+.+..||.+.+.|-+
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~l~wvn~~LFD 121 (178)
T cd08399 87 GKAPALSSKKSAESPSSESKGKHQLLYYVNLLLID 121 (178)
T ss_pred EecCcccccccccccccccccccceEEEEEEEEEc
Confidence 74311 0111111222357788999998877
No 271
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=92.43 E-value=0.56 Score=47.05 Aligned_cols=114 Identities=18% Similarity=0.220 Sum_probs=73.3
Q ss_pred ceEEEEeecCCCccCCCCCCCCCEEEEEe--CCc----eeeeccCC----CCCCcccceeEEEeccCCCCCccceEEEEE
Q 001696 2 KLVVEVVDAYDLMPKDGEGSASPFAEVDF--LNQ----LSKTKTIP----KNLNPVWNQKLLFDFDQTKSHNHLRIEVSI 71 (1026)
Q Consensus 2 ~L~V~v~~a~~L~~~~~~g~~dpyv~v~~--~~~----~~~T~~~~----~t~nP~Wne~f~f~~~~~~~~~~~~L~~~V 71 (1026)
.+.|+|.++.+++........|-||.+.+ +++ ...|+... -...+.|||...|++.-.+--.+..|.|.|
T Consensus 9 ~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~itl 88 (171)
T cd04012 9 LLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVLTL 88 (171)
T ss_pred cEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEEEE
Confidence 37899999999987665556888999877 442 23443221 123578999999997544333457899999
Q ss_pred eeCCCCCC-------CCCccceeEEecCccccccCCceeEEeeccccccccccccccceeEEecCCCC
Q 001696 72 YHHERRPI-------PGRHFLGRVRIPCSNLVRKGEEVYQRFPLEKKWFLSSVKGEVGLKIYISPQSE 132 (1026)
Q Consensus 72 ~d~d~~~~-------~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~~~~ 132 (1026)
|+...... ..+..||.+.++|-+-.. .| .+|...+.++....+.
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~~~---------~L--------~~G~~~L~lW~~~~~~ 139 (171)
T cd04012 89 YGTTSSPDGGSNKQRMGPEELGWVSLPLFDFRG---------VL--------RQGSLLLGLWPPSKDN 139 (171)
T ss_pred EEEecCCccccccccccceEEEEEeEeeEcchh---------hh--------ccCCEEEEeccCCccC
Confidence 99433210 134688888888554211 11 2588888887554433
No 272
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=92.42 E-value=0.81 Score=39.57 Aligned_cols=84 Identities=13% Similarity=0.235 Sum_probs=57.8
Q ss_pred CCCCEEEEEeCC-ceeeeccCCCCCCcccceeEEEeccCCCCCccceEEEEEeeCCCCCCCCCccceeEEecCccccccC
Q 001696 21 SASPFAEVDFLN-QLSKTKTIPKNLNPVWNQKLLFDFDQTKSHNHLRIEVSIYHHERRPIPGRHFLGRVRIPCSNLVRKG 99 (1026)
Q Consensus 21 ~~dpyv~v~~~~-~~~~T~~~~~t~nP~Wne~f~f~~~~~~~~~~~~L~~~V~d~d~~~~~~d~~lG~~~i~l~~l~~~~ 99 (1026)
..+-.+++.+++ ...+|.-.. ..+..|++.|.|.+... .+|+|.||=.|- ..+.|-.-+-|++..
T Consensus 8 ~~eV~avLklDn~~VgqT~Wk~-~s~q~WDQ~Fti~LdRs-----RELEI~VywrD~-----RslCav~~lrLEd~~--- 73 (98)
T cd08687 8 CSEVSAVLKLDNTVVGQTQWKP-KSNQAWDQSFTLELERS-----RELEIAVYWRDW-----RSLCAVKFLKLEDER--- 73 (98)
T ss_pred ccceEEEEEEcCeEEeeccccc-cccccccceeEEEeecc-----cEEEEEEEEecc-----hhhhhheeeEhhhhc---
Confidence 367789999987 566776653 36788999999998865 489999987332 346677777777732
Q ss_pred CceeEEeeccccccccccccccceeEEe
Q 001696 100 EEVYQRFPLEKKWFLSSVKGEVGLKIYI 127 (1026)
Q Consensus 100 ~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 127 (1026)
.....+|++ .|.+..++.|
T Consensus 74 --~~~~~~lep-------qg~l~~ev~f 92 (98)
T cd08687 74 --HEVQLDMEP-------QLCLVAELTF 92 (98)
T ss_pred --ccceecccc-------ccEEEEEEEe
Confidence 223356665 5677776665
No 273
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=92.41 E-value=0.52 Score=46.49 Aligned_cols=70 Identities=27% Similarity=0.250 Sum_probs=51.8
Q ss_pred CCCcEEEEEE--CCeEE----EeeeecCCCCCCcccceeEEEee---CCCcCeEEEEEEEccCCCCCceeEEEEEeCccc
Q 001696 468 LPEGFVKVQV--GNQVL----KTKICPTPTTNPLWNEDLVFVAA---EPFEEQLFLTVEDRVHASKDEVLGKISLPLHIF 538 (1026)
Q Consensus 468 ~~dpyV~v~l--g~~~~----kT~~~~~~t~nP~wne~f~f~v~---~~~~~~L~i~V~d~d~~~~d~~lG~~~i~l~~l 538 (1026)
.+|-||++.+ |++.. .|+.+ .-+..+.|||-..|++. -|.+..|.|+||+.+..+....+|.+.++|-+-
T Consensus 29 ~~~l~V~~~l~~~~~~L~~pv~T~~~-~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd~ 107 (159)
T cd08397 29 NSDLFVTCQVFDDGKPLTLPVQTSYK-PFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFNK 107 (159)
T ss_pred CCCEEEEEEEEECCEeccCcEEcccc-CCCCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeECC
Confidence 3677888766 55533 55555 34567889999999863 246789999999987655678999999998763
No 274
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=91.76 E-value=0.76 Score=46.11 Aligned_cols=90 Identities=28% Similarity=0.382 Sum_probs=63.5
Q ss_pred EEEEEEEEeEecCCCCCCCCCCcEEEEEE--CCeEE----Eeeeec---CCCCCCcccceeEEEee---CCCcCeEEEEE
Q 001696 449 YLRVNVIEAQDIVPNDRNRLPEGFVKVQV--GNQVL----KTKICP---TPTTNPLWNEDLVFVAA---EPFEEQLFLTV 516 (1026)
Q Consensus 449 ~l~V~I~~a~~L~~~d~~~~~dpyV~v~l--g~~~~----kT~~~~---~~t~nP~wne~f~f~v~---~~~~~~L~i~V 516 (1026)
.++|+|..+.+++........|-||++.+ |++.. .|+... .-...+.|||...|++. -|.+..|.|+|
T Consensus 9 ~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~itl 88 (171)
T cd04012 9 LLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVLTL 88 (171)
T ss_pred cEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEEEE
Confidence 48999999999987665445788888866 66543 444321 11235779999999762 24677999999
Q ss_pred EEccCCC---------CCceeEEEEEeCccc
Q 001696 517 EDRVHAS---------KDEVLGKISLPLHIF 538 (1026)
Q Consensus 517 ~d~d~~~---------~d~~lG~~~i~l~~l 538 (1026)
|+..... .+..||.+.++|-+.
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~ 119 (171)
T cd04012 89 YGTTSSPDGGSNKQRMGPEELGWVSLPLFDF 119 (171)
T ss_pred EEEecCCccccccccccceEEEEEeEeeEcc
Confidence 9986543 457889988888763
No 275
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=91.76 E-value=1.1 Score=44.89 Aligned_cols=69 Identities=29% Similarity=0.265 Sum_probs=46.6
Q ss_pred EEEEEEEeEecCCCCCCCCCCcEEEEEE--CCeEE---EeeeecCCCCCCcccceeEEEee---CCCcCeEEEEEEEcc
Q 001696 450 LRVNVIEAQDIVPNDRNRLPEGFVKVQV--GNQVL---KTKICPTPTTNPLWNEDLVFVAA---EPFEEQLFLTVEDRV 520 (1026)
Q Consensus 450 l~V~I~~a~~L~~~d~~~~~dpyV~v~l--g~~~~---kT~~~~~~t~nP~wne~f~f~v~---~~~~~~L~i~V~d~d 520 (1026)
++|+|+++.. +..+......-||++.+ |++.. +|... .-+.++.|||-+.|++. -|....|.|+||+..
T Consensus 12 friki~~~~~-~~~~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~-~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~ 88 (178)
T cd08399 12 FRVKILGIDI-PVLPRNTDLTVFVEANIQHGQQVLCQRRTSPK-PFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGK 88 (178)
T ss_pred EEEEEEeecc-cCcCCCCceEEEEEEEEEECCeecccceeecc-CCCCCccccccEECccccccCChhhEEEEEEEEEe
Confidence 7888888863 33333333456777654 66533 56655 35667999999888763 236779999999974
No 276
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=88.97 E-value=4.1 Score=35.44 Aligned_cols=63 Identities=22% Similarity=0.322 Sum_probs=48.3
Q ss_pred CCcEEEEEECCe-eeEeeeecCCCCCeEeEEEEEEecCCCCCeEEEEEEeCCCCCCCceeEEEEEEcccc
Q 001696 306 CDPYVEVKMGNY-KGRTKHFEKRMNPEWNQVFAFSKERIQSSMLEVFLKDKEMVGRDDYLGRVAFDLNEV 374 (1026)
Q Consensus 306 ~dpyv~v~~~~~-~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~v~V~d~~~~~~d~~lG~~~i~l~~l 374 (1026)
.+-.+.+.+++. ..+|.-.. -.+..|++.|.+.++. +..|+|.||-+|. ..+.|...+.|.+.
T Consensus 9 ~eV~avLklDn~~VgqT~Wk~-~s~q~WDQ~Fti~LdR--sRELEI~VywrD~---RslCav~~lrLEd~ 72 (98)
T cd08687 9 SEVSAVLKLDNTVVGQTQWKP-KSNQAWDQSFTLELER--SRELEIAVYWRDW---RSLCAVKFLKLEDE 72 (98)
T ss_pred cceEEEEEEcCeEEeeccccc-cccccccceeEEEeec--ccEEEEEEEEecc---hhhhhheeeEhhhh
Confidence 577889999885 56776544 3588999999999876 4789999987764 35777778888874
No 277
>PF08151 FerI: FerI (NUC094) domain; InterPro: IPR012968 The ferlin gene family are characterised by multiple tandem C2 domains and a C-terminal transmembrane domain. They are found in a wide range of species and their function remains unknown, however, mutations in its two most well-characterised members, dysferlin and otoferlin, have been implicated in human disease []. This domain is present in proteins of the Ferlin family, which includes Otoferlin, Myoferlin and Dysferlin. It is often located between two C2 domains [].
Probab=88.40 E-value=0.91 Score=37.87 Aligned_cols=44 Identities=11% Similarity=0.133 Sum_probs=33.6
Q ss_pred EeCcccccccCCCCccceeEEcccCCCCchhhhhhccccccceEEEEEEecCC
Q 001696 533 LPLHIFEKRLDHRPVHSRWFNLEKFGFGAIEADRRKELKFSSRVHLRVCLEGG 585 (1026)
Q Consensus 533 i~l~~l~~~~~~~~~~~~w~~L~~~~~~~~~~~~~~~~~~~g~l~l~~~~~~~ 585 (1026)
+++..++.+ +++.+.++|..|.++.+. .....|+|++.+++.+.
T Consensus 1 ~DlgtVY~q-P~H~~~~KW~~L~dP~D~--------~~G~kGYlKv~i~Vlg~ 44 (72)
T PF08151_consen 1 LDLGTVYNQ-PDHQFYRKWALLTDPDDT--------SAGVKGYLKVDISVLGP 44 (72)
T ss_pred CceeeeecC-CCCeeEeceEEecCCCCC--------ccCCceEEEEEEEEEcC
Confidence 355666665 678899999999998753 33468999999998764
No 278
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=88.31 E-value=4.1 Score=39.47 Aligned_cols=66 Identities=20% Similarity=0.287 Sum_probs=45.1
Q ss_pred cEEEEE--ECCEE-----EEeeeecCC-CCceeecEEEEEee--C-C-CCEEEEEEEeCCCCCCCCccCCCCCCCC----
Q 001696 638 AYCIAK--YGQKW-----VRTRTILDT-FNPKWNEQYTWEVY--D-P-CTVITLGVFDNCHLGGGEKQNGSSAVRD---- 701 (1026)
Q Consensus 638 pyv~v~--~g~~~-----~~T~~~~~t-~~P~wne~~~~~v~--~-~-~~~l~i~v~d~~~~~~~~~~~~~~~~~~---- 701 (1026)
-||.+. .|++. ..|..+.-+ .++.|||.++|++. + | .+.|.|+||..+... ..
T Consensus 4 ~~V~~~ly~g~~~L~~p~~~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~-----------~~~~~~ 72 (142)
T PF00792_consen 4 LYVECQLYHGGEPLCNPVQSTSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKK-----------KSKKKK 72 (142)
T ss_dssp EEEEEEEEETTEESS-EEEE-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECST-----------TT--EE
T ss_pred EEEEEEEEECCEEeecCeeeccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCC-----------ccccce
Confidence 345543 36654 356666666 89999999999875 3 4 668999999876532 22
Q ss_pred CeeEEEEEEcccc
Q 001696 702 SRIGKVRIRLSTL 714 (1026)
Q Consensus 702 ~~lG~~~i~l~~l 714 (1026)
..||.+.++|-+-
T Consensus 73 ~~lgw~n~~lFd~ 85 (142)
T PF00792_consen 73 VPLGWVNLPLFDY 85 (142)
T ss_dssp EEEEEEEEESB-T
T ss_pred eEEEEEEEEeECC
Confidence 6899999999886
No 279
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=87.85 E-value=2.5 Score=38.15 Aligned_cols=72 Identities=17% Similarity=0.212 Sum_probs=48.0
Q ss_pred eEEEEeecCCCccCCCCCCCCCEEEEEe--CCc----eeeeccCCCCCCcccceeEEEeccCCCCCccceEEEEEeeC
Q 001696 3 LVVEVVDAYDLMPKDGEGSASPFAEVDF--LNQ----LSKTKTIPKNLNPVWNQKLLFDFDQTKSHNHLRIEVSIYHH 74 (1026)
Q Consensus 3 L~V~v~~a~~L~~~~~~g~~dpyv~v~~--~~~----~~~T~~~~~t~nP~Wne~f~f~~~~~~~~~~~~L~~~V~d~ 74 (1026)
+.+.+..+.+.........++-||.+.+ ++. ...|+.+.-...+.|||...|++.-.+--....|.|.||+.
T Consensus 13 ~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~ 90 (100)
T smart00142 13 LVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEV 90 (100)
T ss_pred eEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEe
Confidence 4566777777654433323578899877 442 33555555556689999999987654444457899999993
No 280
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=87.25 E-value=6.3 Score=38.13 Aligned_cols=75 Identities=20% Similarity=0.317 Sum_probs=50.6
Q ss_pred EeeeecCC-CCCeEeEEEEEEe--cC-CCCCeEEEEEEeCCCCCCC----ceeEEEEEEccccCCCCCCCCCCCCEEEEe
Q 001696 320 RTKHFEKR-MNPEWNQVFAFSK--ER-IQSSMLEVFLKDKEMVGRD----DYLGRVAFDLNEVPTRVPPDSPLAPQWYRL 391 (1026)
Q Consensus 320 kT~~~~~t-~nP~wne~f~f~v--~~-~~~~~L~v~V~d~~~~~~d----~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L 391 (1026)
.|+....+ .++.|||.+.|++ .+ +.+..|.|+||+.+..... ..||.+.++|-+.... |
T Consensus 23 ~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~lFd~~~~-------------L 89 (142)
T PF00792_consen 23 STSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPLFDYRGQ-------------L 89 (142)
T ss_dssp E-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEESB-TTSB-------------B
T ss_pred eccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEeECCCCc-------------c
Confidence 56655555 7999999999985 33 3478999999997765444 6999999998876321 1
Q ss_pred ecCCCCCcccceEEEEEEecccCc
Q 001696 392 EDRRGEGKVRGQTMLAIWMGTQAD 415 (1026)
Q Consensus 392 ~~~~~~~~~~G~i~l~~~~~~~~d 415 (1026)
..|...+.+|-....+
T Consensus 90 --------~~G~~~L~lW~~~~~~ 105 (142)
T PF00792_consen 90 --------RQGPQKLSLWPDEEPD 105 (142)
T ss_dssp --------EEEEEEEE-EET-TTS
T ss_pred --------cCCCEEEEEEcCCCCc
Confidence 2488888888765544
No 281
>PF11696 DUF3292: Protein of unknown function (DUF3292); InterPro: IPR021709 This eukaryotic family of proteins has no known function.
Probab=86.94 E-value=1.6 Score=51.70 Aligned_cols=65 Identities=32% Similarity=0.409 Sum_probs=49.2
Q ss_pred HHHHHHhhhHhHhhhccccCchhHHHHHHHHHHHHHHHhhhhhHHHHHHHhhhhhcCCCCCCC-CCCch
Q 001696 944 VVGDIATQGERFQSLLSWRDPRATALFILFSLCAAMVLYTTPFKVVALLAGLYYLRHPRFRSK-LPSVP 1011 (1026)
Q Consensus 944 ~l~~~a~~le~~~~l~~w~~p~~t~~~~~~l~~~~i~l~~iP~r~i~l~~g~~~~r~P~~~~~-~p~~~ 1011 (1026)
++=.++.+...|.-|.+|++|+.|..|+++.++++++-+++|.-+++|+.- +.+|..|.- +|+.+
T Consensus 104 v~v~~~~~~khi~RLrSW~eprRT~~fc~vYf~aW~~dll~p~~~~~L~~l---i~~P~~r~~lFPpap 169 (642)
T PF11696_consen 104 VVVGLAAFIKHIARLRSWREPRRTAAFCAVYFIAWLLDLLVPAFFAFLIAL---ILSPPARSILFPPAP 169 (642)
T ss_pred hHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcCcccccccCCCCC
Confidence 444556666778888999999999999999999999999999966555543 346666654 46544
No 282
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=86.24 E-value=4 Score=36.85 Aligned_cols=70 Identities=24% Similarity=0.305 Sum_probs=47.1
Q ss_pred EEEEEEEeEecCCCCCCCCCCcEEEEEE--CCeEE----EeeeecCCCCCCcccceeEEEee---CCCcCeEEEEEEEcc
Q 001696 450 LRVNVIEAQDIVPNDRNRLPEGFVKVQV--GNQVL----KTKICPTPTTNPLWNEDLVFVAA---EPFEEQLFLTVEDRV 520 (1026)
Q Consensus 450 l~V~I~~a~~L~~~d~~~~~dpyV~v~l--g~~~~----kT~~~~~~t~nP~wne~f~f~v~---~~~~~~L~i~V~d~d 520 (1026)
+.+.+..+.+.........++-||++.+ |++.. .|+.+ .-...+.|||-..|++. -|.+..|.|+||+..
T Consensus 13 ~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~-~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~ 91 (100)
T smart00142 13 LVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYK-PFFPSVKWNEWLTFPIQISDLPREARLCITIYEVK 91 (100)
T ss_pred eEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEeccc-CCCCCcccceeEEccCchhcCChhhEEEEEEEEee
Confidence 5566777777655433333578888866 66543 45544 33456899999998753 346779999999974
No 283
>PF06398 Pex24p: Integral peroxisomal membrane peroxin; InterPro: IPR010482 Peroxisomes play diverse roles in the cell, compartmentalising many activities related to lipid metabolism and functioning in the decomposition of toxic hydrogen peroxide. Sequence similarity was identified between two hypothetical proteins and the peroxin integral membrane protein Pex24p [].
Probab=85.14 E-value=1.9 Score=49.10 Aligned_cols=70 Identities=24% Similarity=0.388 Sum_probs=44.5
Q ss_pred HHHHhhHHHHHHHHHhhh---HhHhhhccccCchhHHHHHHHHHHHHHHHhh----hhhHHHHHHHh--hhhhcCCCCC
Q 001696 935 RSVAGRIQTVVGDIATQG---ERFQSLLSWRDPRATALFILFSLCAAMVLYT----TPFKVVALLAG--LYYLRHPRFR 1004 (1026)
Q Consensus 935 ~~~~~~vQ~~l~~~a~~l---e~~~~l~~w~~p~~t~~~~~~l~~~~i~l~~----iP~r~i~l~~g--~~~~r~P~~~ 1004 (1026)
..+..++-..|+.+-.++ +++.++++|++|..|..+++++..+++..++ +|+-+++++.. -|..+||.=.
T Consensus 9 ~~n~~~l~~~l~~~f~~~~~~d~vl~il~W~~p~~t~~~L~l~t~~~l~p~l~l~~lp~~~ll~~il~~~yl~~~p~~~ 87 (359)
T PF06398_consen 9 SSNFPRLSSRLGPIFPFQLILDRVLRILTWTNPDYTLSFLLLYTFLCLNPYLLLLSLPLGLLLFGILLPSYLYRHPSPT 87 (359)
T ss_pred HhChHHHHHHHHHhhHHHHHHHHHHHeEEeCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHeecCCCc
Confidence 444556667778888888 9999999999999887766655555554444 44444333322 2345665443
No 284
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=83.80 E-value=18 Score=36.17 Aligned_cols=82 Identities=20% Similarity=0.225 Sum_probs=59.1
Q ss_pred CcCcEEEEEECCEE-EEeeeecC--CCCceeecEEEEEeeCCCCEEEEEEEeCCCCCCCCccCCCCCCCCCeeEEEEEEc
Q 001696 635 STDAYCIAKYGQKW-VRTRTILD--TFNPKWNEQYTWEVYDPCTVITLGVFDNCHLGGGEKQNGSSAVRDSRIGKVRIRL 711 (1026)
Q Consensus 635 ~~dpyv~v~~g~~~-~~T~~~~~--t~~P~wne~~~~~v~~~~~~l~i~v~d~~~~~~~~~~~~~~~~~~~~lG~~~i~l 711 (1026)
+..-|++|.++++. .+|+...= ...-.|||.|.+.|..--..|.|+||..... .+..|+.+.|++
T Consensus 36 ~~~~~ikl~~N~k~V~~T~~~~l~~dF~v~f~~~f~v~i~~~Pesi~l~i~E~~~~------------~~~~la~v~vpv 103 (168)
T PF15625_consen 36 KTRYYIKLFFNDKEVSRTRSRPLWSDFRVHFNEIFNVQITRWPESIKLEIYEKSGL------------SDRLLAEVFVPV 103 (168)
T ss_pred heeEEEEEEECCEEEEeeeeEecCCCeEEeccCEEEEEEecCCCEEEEEEEEccCc------------cceEEEEEEeeC
Confidence 44679999998765 55655532 3334679999999988777799999997642 689999999998
Q ss_pred ccccCC--ce--EeeeEeeee
Q 001696 712 STLEAH--RI--YTHSYPLLV 728 (1026)
Q Consensus 712 ~~l~~~--~~--~~~~~~L~~ 728 (1026)
-..... .. ...||.+.+
T Consensus 104 P~~~~~~~~~~~~~~~~eFsS 124 (168)
T PF15625_consen 104 PGSTVHTSTDNVPLEEYEFSS 124 (168)
T ss_pred CCCcccccccCCceEeEEEcC
Confidence 886443 11 356666664
No 285
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=83.20 E-value=9.9 Score=38.42 Aligned_cols=39 Identities=15% Similarity=0.298 Sum_probs=31.9
Q ss_pred eeEeeeecCCCCCeEeEEEEEEec--CCCCCeEEEEEEeCC
Q 001696 318 KGRTKHFEKRMNPEWNQVFAFSKE--RIQSSMLEVFLKDKE 356 (1026)
Q Consensus 318 ~~kT~~~~~t~nP~wne~f~f~v~--~~~~~~L~v~V~d~~ 356 (1026)
.++|.+...+.+|.|+|++.+.+. ......|.|++++..
T Consensus 54 e~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S 94 (189)
T cd08695 54 EYRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCS 94 (189)
T ss_pred eEEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEee
Confidence 468999999999999999998863 335678999888754
No 286
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=82.62 E-value=17 Score=36.23 Aligned_cols=88 Identities=14% Similarity=0.169 Sum_probs=60.3
Q ss_pred CCcEEEEEECCe-EEEeeeec-CCCCCCcccceeEEEeeCCCcCeEEEEEEEccCCCCCceeEEEEEeCcccccccCCCC
Q 001696 469 PEGFVKVQVGNQ-VLKTKICP-TPTTNPLWNEDLVFVAAEPFEEQLFLTVEDRVHASKDEVLGKISLPLHIFEKRLDHRP 546 (1026)
Q Consensus 469 ~dpyV~v~lg~~-~~kT~~~~-~~t~nP~wne~f~f~v~~~~~~~L~i~V~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~ 546 (1026)
..-|+++.++++ +.+|+... .....-.|||.|.+.+.. ..+.|.|+||.... ..+..|+++.+++-..........
T Consensus 37 ~~~~ikl~~N~k~V~~T~~~~l~~dF~v~f~~~f~v~i~~-~Pesi~l~i~E~~~-~~~~~la~v~vpvP~~~~~~~~~~ 114 (168)
T PF15625_consen 37 TRYYIKLFFNDKEVSRTRSRPLWSDFRVHFNEIFNVQITR-WPESIKLEIYEKSG-LSDRLLAEVFVPVPGSTVHTSTDN 114 (168)
T ss_pred eeEEEEEEECCEEEEeeeeEecCCCeEEeccCEEEEEEec-CCCEEEEEEEEccC-ccceEEEEEEeeCCCCcccccccC
Confidence 356899999764 56666653 133345679999999877 56799999999866 789999999999876543211111
Q ss_pred ccceeEEcccCC
Q 001696 547 VHSRWFNLEKFG 558 (1026)
Q Consensus 547 ~~~~w~~L~~~~ 558 (1026)
....|+.+....
T Consensus 115 ~~~~~~eFsS~~ 126 (168)
T PF15625_consen 115 VPLEEYEFSSDQ 126 (168)
T ss_pred CceEeEEEcCCc
Confidence 145666665543
No 287
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=80.87 E-value=16 Score=36.94 Aligned_cols=39 Identities=13% Similarity=0.187 Sum_probs=31.3
Q ss_pred EEEeeeecCCCCCCcccceeEEEeeCC--CcCeEEEEEEEcc
Q 001696 481 VLKTKICPTPTTNPLWNEDLVFVAAEP--FEEQLFLTVEDRV 520 (1026)
Q Consensus 481 ~~kT~~~~~~t~nP~wne~f~f~v~~~--~~~~L~i~V~d~d 520 (1026)
.++|.+. ..+.+|.|+|++.+.+... ....|.|++++..
T Consensus 54 e~~S~V~-yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S 94 (189)
T cd08695 54 EYRSFVL-YHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCS 94 (189)
T ss_pred eEEEEEE-EcCCCCCCceeEEEecChhhCCCeeEEEEEEEee
Confidence 5788888 5899999999999987544 5568999888763
No 288
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]
Probab=80.82 E-value=1.9 Score=52.57 Aligned_cols=106 Identities=17% Similarity=0.218 Sum_probs=82.8
Q ss_pred CCcCcEEEEEECCE-EEEeeeecCC-CCceeecEEEEEeeCCCCEEEEEEEeCCCCCCCCccCCCCCCCCCeeEEEEEEc
Q 001696 634 GSTDAYCIAKYGQK-WVRTRTILDT-FNPKWNEQYTWEVYDPCTVITLGVFDNCHLGGGEKQNGSSAVRDSRIGKVRIRL 711 (1026)
Q Consensus 634 ~~~dpyv~v~~g~~-~~~T~~~~~t-~~P~wne~~~~~v~~~~~~l~i~v~d~~~~~~~~~~~~~~~~~~~~lG~~~i~l 711 (1026)
...++|+.+.+... ..+|..+.+. .+|.|.+.|..........+++.|-+.+..| -...+|.+.++.
T Consensus 136 ~~~e~Ylt~~l~~~~~~~t~~~~~f~e~s~~~f~~~~~~~h~~g~v~~~~~~~~~~G-----------~s~~w~~v~~s~ 204 (887)
T KOG1329|consen 136 KTLENYLTVVLHKARYRRTHVIYEFLENSRWSFSFDIGFAHKAGYVIFRVKGARVPG-----------WSKRWGRVKISF 204 (887)
T ss_pred hhccchheeeechhhhhchhhhhcccccchhhhhccccccccccEEEEeecCCcccc-----------ceeEEEEeccch
Confidence 34789999999755 4788888877 7999999998888888888999998877643 478999999999
Q ss_pred ccccCCceEeeeEeeeecCCCCCccCcEEEEEEEEeecc
Q 001696 712 STLEAHRIYTHSYPLLVLHPHGVKKMGELQLAIRFTIFS 750 (1026)
Q Consensus 712 ~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~~~~ 750 (1026)
..+..+.....|+++...+..-..+.-.+.+.+.|.+..
T Consensus 205 ~~~~~~~~~~~~~~Il~~d~~~~~~~~~~~~~~~~~~~~ 243 (887)
T KOG1329|consen 205 LQYCSGHRIGGWFPILDNDGKPHQKGSNESLRLGFTPME 243 (887)
T ss_pred hhhhccccccceeeeeccCCccccCCcccceEEeeEeec
Confidence 999998888999999865543333333466667776543
No 289
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=78.50 E-value=7.8 Score=39.38 Aligned_cols=61 Identities=8% Similarity=0.086 Sum_probs=35.8
Q ss_pred EEEeeeecCCCCceeecEEEEEeeCC---CCEEEEEEEeCCCCCCCCccCCCCCCCCCeeEEEEEEcccccCCc
Q 001696 648 WVRTRTILDTFNPKWNEQYTWEVYDP---CTVITLGVFDNCHLGGGEKQNGSSAVRDSRIGKVRIRLSTLEAHR 718 (1026)
Q Consensus 648 ~~~T~~~~~t~~P~wne~~~~~v~~~---~~~l~i~v~d~~~~~~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~ 718 (1026)
.+.|.+..++.+|.|+|+|.+.+... ..-|.+++++...-.. ..++..+|.+.++|-+ .|.
T Consensus 60 ~~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~--------~~~~~~~g~a~lpL~~--~g~ 123 (184)
T PF14429_consen 60 SYYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKES--------KEKSKPFGYAFLPLMD--NGT 123 (184)
T ss_dssp -EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSS--------S-SS-EEEEEEEESB---TS-
T ss_pred EEEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccc--------cCccceeEEEEEEeee--CCe
Confidence 47888889999999999999999753 4569999999765220 0112799999999988 444
No 290
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=78.09 E-value=21 Score=36.25 Aligned_cols=39 Identities=18% Similarity=0.344 Sum_probs=32.2
Q ss_pred eeEeeeecCCCCCeEeEEEEEEec--CCCCCeEEEEEEeCC
Q 001696 318 KGRTKHFEKRMNPEWNQVFAFSKE--RIQSSMLEVFLKDKE 356 (1026)
Q Consensus 318 ~~kT~~~~~t~nP~wne~f~f~v~--~~~~~~L~v~V~d~~ 356 (1026)
..+|-+...+.+|.|+|++.+.+. ......|.|++++..
T Consensus 54 e~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S 94 (196)
T cd08694 54 EYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRS 94 (196)
T ss_pred eEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeec
Confidence 578889899999999999988863 345789999998754
No 291
>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function. It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.
Probab=77.87 E-value=17 Score=33.22 Aligned_cols=93 Identities=17% Similarity=0.175 Sum_probs=49.8
Q ss_pred EEEEEECCE-EEEeeeecCCCCceeecEEEEEeeCC--------CCEEEEEEEeCCCCCCCCccCCCCCCCCCeeEEEEE
Q 001696 639 YCIAKYGQK-WVRTRTILDTFNPKWNEQYTWEVYDP--------CTVITLGVFDNCHLGGGEKQNGSSAVRDSRIGKVRI 709 (1026)
Q Consensus 639 yv~v~~g~~-~~~T~~~~~t~~P~wne~~~~~v~~~--------~~~l~i~v~d~~~~~~~~~~~~~~~~~~~~lG~~~i 709 (1026)
||.+.+-.. ...|.++. ..+|.+|-+..|.|.-. ...+.|+++..-. ...+.||.++|
T Consensus 2 Fct~dFydfEtq~Tpvv~-G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~g------------~d~~tla~~~i 68 (107)
T PF11618_consen 2 FCTYDFYDFETQTTPVVR-GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQALG------------SDFETLAAGQI 68 (107)
T ss_dssp EEEE-STT---EE---EE-SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE-S------------S-EEEEEEEEE
T ss_pred EEEEEeeceeeeccccee-CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeecc------------CCeEEEEEEEe
Confidence 677766444 45555554 89999998888888632 4469999988542 25789999999
Q ss_pred Eccccc--CCceEeeeEeeeecCCCCCccCcEEEEEEEEe
Q 001696 710 RLSTLE--AHRIYTHSYPLLVLHPHGVKKMGELQLAIRFT 747 (1026)
Q Consensus 710 ~l~~l~--~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~ 747 (1026)
++.++- .+..+.....|.+... . .-|.|+..++..
T Consensus 69 ~l~~ll~~~~~~i~~~~~l~g~~~--~-~~g~l~y~~rl~ 105 (107)
T PF11618_consen 69 SLRPLLESNGERIHGSATLVGVSG--E-DFGTLEYWIRLR 105 (107)
T ss_dssp --SHHHH--S--EEEEEEE-BSSS----TSEEEEEEEEEE
T ss_pred echhhhcCCCceEEEEEEEeccCC--C-eEEEEEEEEEec
Confidence 999984 2334556666653332 2 469888887753
No 292
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=77.66 E-value=25 Score=35.77 Aligned_cols=56 Identities=20% Similarity=0.227 Sum_probs=38.4
Q ss_pred eEEEeeeecCCCCCCcccceeEEEeeCC--CcCeEEEEEEEccCC-CCC---ceeEEEEEeCc
Q 001696 480 QVLKTKICPTPTTNPLWNEDLVFVAAEP--FEEQLFLTVEDRVHA-SKD---EVLGKISLPLH 536 (1026)
Q Consensus 480 ~~~kT~~~~~~t~nP~wne~f~f~v~~~--~~~~L~i~V~d~d~~-~~d---~~lG~~~i~l~ 536 (1026)
..++|-+. ....+|.|+|++.+.+... ....|.|++++.... .+| ..+|-..++|-
T Consensus 53 se~~S~V~-Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~ 114 (196)
T cd08694 53 DEYKSVIY-YQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLM 114 (196)
T ss_pred eeEEEEEE-eecCCCCCceeEEEecChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEeee
Confidence 46788887 5899999999999887543 566899999876321 112 34555555543
No 293
>KOG3543 consensus Ca2+-dependent activator protein [Signal transduction mechanisms]
Probab=72.25 E-value=17 Score=42.24 Aligned_cols=100 Identities=21% Similarity=0.337 Sum_probs=73.9
Q ss_pred EEEEEEEEecCCCCCccCCCCCCcCcEEEEEECCEEEEeeeecCCCCceeecEEEEEeeCCCCEEEEEEEeCCCCCCCCc
Q 001696 613 ILEVGILGAQGLLPMKMKDGRGSTDAYCIAKYGQKWVRTRTILDTFNPKWNEQYTWEVYDPCTVITLGVFDNCHLGGGEK 692 (1026)
Q Consensus 613 ~L~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~g~~~~~T~~~~~t~~P~wne~~~~~v~~~~~~l~i~v~d~~~~~~~~~ 692 (1026)
.++|.|.+.+||... ....=.||..++.+.+.+|.... ...|.|..+=.|.-..|..++.+.+|.+..-
T Consensus 342 smevvvmevqglksv-----apnrivyctmevegeklqtdqae-askp~wgtqgdfstthplpvvkvklftestg----- 410 (1218)
T KOG3543|consen 342 SMEVVVMEVQGLKSV-----APNRIVYCTMEVEGEKLQTDQAE-ASKPKWGTQGDFSTTHPLPVVKVKLFTESTG----- 410 (1218)
T ss_pred eeeEEEeeecccccc-----CCCeeEEEEEEecccccccchhh-hcCCCCCcCCCcccCCCCceeEEEEEeecce-----
Confidence 477889999999864 22345799999999999998764 4479999999999999999999999986531
Q ss_pred cCCCCCCCCCeeEEEEEEcccccCCceEeeeEeeee
Q 001696 693 QNGSSAVRDSRIGKVRIRLSTLEAHRIYTHSYPLLV 728 (1026)
Q Consensus 693 ~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~ 728 (1026)
-..-.|..||++.|.-..=.... ..|+.+..
T Consensus 411 ---vlaledkelgrvil~ptpns~ks--~ewh~mtv 441 (1218)
T KOG3543|consen 411 ---VLALEDKELGRVILQPTPNSAKS--PEWHTMTV 441 (1218)
T ss_pred ---eEEeechhhCeEEEecCCCCcCC--ccceeeec
Confidence 11236888999987654432222 56777664
No 294
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=72.01 E-value=14 Score=37.63 Aligned_cols=56 Identities=11% Similarity=0.104 Sum_probs=32.8
Q ss_pred eeEeeeecCCCCCeEeEEEEEEec--CCCCCeEEEEEEeCCCCC-C--CceeEEEEEEccc
Q 001696 318 KGRTKHFEKRMNPEWNQVFAFSKE--RIQSSMLEVFLKDKEMVG-R--DDYLGRVAFDLNE 373 (1026)
Q Consensus 318 ~~kT~~~~~t~nP~wne~f~f~v~--~~~~~~L~v~V~d~~~~~-~--d~~lG~~~i~l~~ 373 (1026)
...|.+..++.+|.|+|+|.+.+. ...+..|.|++++...-. + +..+|.+.++|.+
T Consensus 60 ~~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 60 SYYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD 120 (184)
T ss_dssp -EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred EEEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence 467888888999999999998873 234678999999865432 1 1578887777765
No 295
>PTZ00447 apical membrane antigen 1-like protein; Provisional
Probab=71.65 E-value=40 Score=36.64 Aligned_cols=116 Identities=16% Similarity=0.215 Sum_probs=79.3
Q ss_pred CCceEEEEEEEEEeEecCCCCCCCCCCcEEEEEECCeEEEeeeecCCCCC-CcccceeEEEeeCCCcCeEEEEEEEccCC
Q 001696 444 SPKLWYLRVNVIEAQDIVPNDRNRLPEGFVKVQVGNQVLKTKICPTPTTN-PLWNEDLVFVAAEPFEEQLFLTVEDRVHA 522 (1026)
Q Consensus 444 ~p~~~~l~V~I~~a~~L~~~d~~~~~dpyV~v~lg~~~~kT~~~~~~t~n-P~wne~f~f~v~~~~~~~L~i~V~d~d~~ 522 (1026)
..+...|-|.|.+..++.. ....|+.+..|+....|..+.-+..+ -.-.+.....+.. .+..|++.|+-. ++
T Consensus 54 nHRkF~LLVeI~EI~~i~k-----~khiyIef~~Gr~d~TT~~IpTsKK~RI~IqqRV~IkIRQ-cDnTLkI~lfKK-kL 126 (508)
T PTZ00447 54 NYRTFYLLVKINEIFNINK-----YKHIYIIFSTDKYDFTTDEIPTNKKNRIHIDQRVDIKIRQ-CDETLRVDLFTT-KL 126 (508)
T ss_pred ccceeeEEEEehhhhcccc-----ceeEEEEEEcCceEEEccccccCcCceEEEeeeeeeeeee-cCceEEEEEEec-cc
Confidence 3456679999988877654 34789999999999998766311111 1334444444433 567899999976 46
Q ss_pred CCCceeEEEEEeCcc-cccccCCCCccceeEEcccCCCCchhhhhhccccccceEEEEEE
Q 001696 523 SKDEVLGKISLPLHI-FEKRLDHRPVHSRWFNLEKFGFGAIEADRRKELKFSSRVHLRVC 581 (1026)
Q Consensus 523 ~~d~~lG~~~i~l~~-l~~~~~~~~~~~~w~~L~~~~~~~~~~~~~~~~~~~g~l~l~~~ 581 (1026)
.+..-||.+.+++.. +.. .....++||.+...+ ...++|.++++
T Consensus 127 vkk~hIgdI~InIn~dIId---k~FPKnkWy~c~kDG------------q~~cRIqLSFh 171 (508)
T PTZ00447 127 TKKVHIGQIKIDINASVIS---KSFPKNEWFVCFKDG------------QEICKVQMSFY 171 (508)
T ss_pred cceeEEEEEEecccHHHHh---ccCCccceEEEecCC------------ceeeeEEEEeh
Confidence 778899999999886 332 234578999996553 34678887775
No 296
>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function. It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.
Probab=70.93 E-value=14 Score=33.74 Aligned_cols=95 Identities=14% Similarity=0.052 Sum_probs=49.5
Q ss_pred EEEEEECCe-eeEeeeecCCCCCeEeEEEEEEecCC-------CCCeEEEEEEeCCCCCCCceeEEEEEEccccCCCCCC
Q 001696 309 YVEVKMGNY-KGRTKHFEKRMNPEWNQVFAFSKERI-------QSSMLEVFLKDKEMVGRDDYLGRVAFDLNEVPTRVPP 380 (1026)
Q Consensus 309 yv~v~~~~~-~~kT~~~~~t~nP~wne~f~f~v~~~-------~~~~L~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~ 380 (1026)
||.+.+-.. ...|.++. +.+|.+|-+-.|.+... ++..+.|+++..-.. .-..+|.+.+++..+......
T Consensus 2 Fct~dFydfEtq~Tpvv~-G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~g~-d~~tla~~~i~l~~ll~~~~~ 79 (107)
T PF11618_consen 2 FCTYDFYDFETQTTPVVR-GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQALGS-DFETLAAGQISLRPLLESNGE 79 (107)
T ss_dssp EEEE-STT---EE---EE-SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE-SS--EEEEEEEEE--SHHHH--S-
T ss_pred EEEEEeeceeeeccccee-CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeeccC-CeEEEEEEEeechhhhcCCCc
Confidence 555655554 45566655 78999999988887432 367899999987633 568999999999999854321
Q ss_pred CCCCCCEEEEeecCCCCCcccceEEEEEEe
Q 001696 381 DSPLAPQWYRLEDRRGEGKVRGQTMLAIWM 410 (1026)
Q Consensus 381 ~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~ 410 (1026)
.......|.+.+++ .-|.|.+.+..
T Consensus 80 ---~i~~~~~l~g~~~~--~~g~l~y~~rl 104 (107)
T PF11618_consen 80 ---RIHGSATLVGVSGE--DFGTLEYWIRL 104 (107)
T ss_dssp ----EEEEEEE-BSSS---TSEEEEEEEEE
T ss_pred ---eEEEEEEEeccCCC--eEEEEEEEEEe
Confidence 11244556555543 67888776644
No 297
>cd05137 RasGAP_CLA2_BUD2 CLA2/BUD2 functions as a GTPase-activating protein (GAP) for BUD1/RSR1 and is necessary for proper bud-site selection in yeast. BUD2 has sequence similarity to the catalytic domain of RasGAPs, and stimulates the hydrolysis of BUD1-GTP to BUD1-GDP. Elimination of Bud2p activity by mutation causes a random budding pattern with no growth defect. Overproduction of Bud2p also alters the budding pattern.
Probab=68.66 E-value=11 Score=42.94 Aligned_cols=45 Identities=16% Similarity=0.214 Sum_probs=35.0
Q ss_pred eeEEEEEEccc-ccCCceEeeeEeeeecCCCCCccCcEEEEEEEEeec
Q 001696 703 RIGKVRIRLST-LEAHRIYTHSYPLLVLHPHGVKKMGELQLAIRFTIF 749 (1026)
Q Consensus 703 ~lG~~~i~l~~-l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~~~ 749 (1026)
.+|.+.|++.. +.++...+.|||+......+.. .|.+ |.++|+-.
T Consensus 1 ~~G~v~i~~~~~~~~~~~~e~w~~i~~~~~~~~~-~~~l-lk~~~~~~ 46 (395)
T cd05137 1 LVGRIDITLEMILDRGLDKETWLPIFDVDNKSVG-EGLI-IKVSSEEN 46 (395)
T ss_pred CeeEEEeehhhhccCCCCceeeeccccCCCCCcC-cceE-EEEEeeec
Confidence 48999999999 7887888999999976554433 4777 78887643
No 298
>PF06219 DUF1005: Protein of unknown function (DUF1005); InterPro: IPR010410 This is a family of plant proteins with undetermined function.
Probab=68.13 E-value=52 Score=37.02 Aligned_cols=110 Identities=14% Similarity=0.105 Sum_probs=64.3
Q ss_pred CcCcEEEEEECCEEEEeeeec----CCCCc-eee-c--EEEEEee------CC------CCEEEEEEEeCCCCCCCCccC
Q 001696 635 STDAYCIAKYGQKWVRTRTIL----DTFNP-KWN-E--QYTWEVY------DP------CTVITLGVFDNCHLGGGEKQN 694 (1026)
Q Consensus 635 ~~dpyv~v~~g~~~~~T~~~~----~t~~P-~wn-e--~~~~~v~------~~------~~~l~i~v~d~~~~~~~~~~~ 694 (1026)
.+..||+|++.+--.+|..+. .+.+| .=+ - .|+++-. .+ ...|+|.||.-..-. .
T Consensus 35 sspCfC~IrL~~fP~Qta~vPLi~~~~~~~p~~~~~Aa~F~Ld~s~l~~l~~~~~f~~~~~~L~i~VY~Gr~G~-----t 109 (460)
T PF06219_consen 35 SSPCFCEIRLKGFPSQTAPVPLISSSEPEPPDSHSLAASFHLDKSDLRRLLAKPCFYSPRPCLEISVYTGRRGS-----T 109 (460)
T ss_pred CCCeEEEEecCCCCccceeeeeccCCCCCCCCcCCcceEEecCHHHHHHHhCCCccccCCceEEEEEEECCCCC-----c
Confidence 467899999998888888773 12221 111 2 3444221 11 256999999844311 1
Q ss_pred CCCCCCCCeeEEEEEEcccc-cCC---ceEeeeEeeeecCCCCCc-cCcEEEEEEEEeec
Q 001696 695 GSSAVRDSRIGKVRIRLSTL-EAH---RIYTHSYPLLVLHPHGVK-KMGELQLAIRFTIF 749 (1026)
Q Consensus 695 ~~~~~~~~~lG~~~i~l~~l-~~~---~~~~~~~~L~~~~~~g~~-~~G~i~l~~~f~~~ 749 (1026)
-|......+||++.|+|.-= ..+ ..+..|..+-....++.+ ...++||.++-.|+
T Consensus 110 CGv~~~~klLG~v~vpldl~~ae~kp~v~hnGWi~iGk~~~~~~~~~~aeLHl~Vr~EpD 169 (460)
T PF06219_consen 110 CGVGNSGKLLGKVRVPLDLKWAEGKPVVFHNGWISIGKNKQGSGKSPSAELHLVVRAEPD 169 (460)
T ss_pred ccccccceEEEEEEEEeccccccCCeeEEEccceecCCCCCCCCCCCcceEEEEEeccCC
Confidence 12234678999999998732 111 245778888643322222 24689988886543
No 299
>PTZ00447 apical membrane antigen 1-like protein; Provisional
Probab=63.07 E-value=79 Score=34.46 Aligned_cols=108 Identities=12% Similarity=0.155 Sum_probs=74.7
Q ss_pred EEEEEEEEecCCCCCccCCCCCCcCcEEEEEECCEEEEeeeecCCCCc--eeecEEEEEeeCCCCEEEEEEEeCCCCCCC
Q 001696 613 ILEVGILGAQGLLPMKMKDGRGSTDAYCIAKYGQKWVRTRTILDTFNP--KWNEQYTWEVYDPCTVITLGVFDNCHLGGG 690 (1026)
Q Consensus 613 ~L~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~g~~~~~T~~~~~t~~P--~wne~~~~~v~~~~~~l~i~v~d~~~~~~~ 690 (1026)
.|-|.|.+..++.. ....|+.+..|...++|..+.-+..= .-.+.....+..-...|.|.||-..-.
T Consensus 59 ~LLVeI~EI~~i~k--------~khiyIef~~Gr~d~TT~~IpTsKK~RI~IqqRV~IkIRQcDnTLkI~lfKKkLv--- 127 (508)
T PTZ00447 59 YLLVKINEIFNINK--------YKHIYIIFSTDKYDFTTDEIPTNKKNRIHIDQRVDIKIRQCDETLRVDLFTTKLT--- 127 (508)
T ss_pred eEEEEehhhhcccc--------ceeEEEEEEcCceEEEccccccCcCceEEEeeeeeeeeeecCceEEEEEEecccc---
Confidence 35677776665543 45689999999999999777544333 334556666667677899999986543
Q ss_pred CccCCCCCCCCCeeEEEEEEccc--ccCCceEeeeEeeeecCCCCCccCcEEEEEE
Q 001696 691 EKQNGSSAVRDSRIGKVRIRLST--LEAHRIYTHSYPLLVLHPHGVKKMGELQLAI 744 (1026)
Q Consensus 691 ~~~~~~~~~~~~~lG~~~i~l~~--l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~ 744 (1026)
+...||.+.|++.. +...-+-..||-+. ..| ...+.|.|++
T Consensus 128 ---------kk~hIgdI~InIn~dIIdk~FPKnkWy~c~---kDG-q~~cRIqLSF 170 (508)
T PTZ00447 128 ---------KKVHIGQIKIDINASVISKSFPKNEWFVCF---KDG-QEICKVQMSF 170 (508)
T ss_pred ---------ceeEEEEEEecccHHHHhccCCccceEEEe---cCC-ceeeeEEEEe
Confidence 57889999999987 34444558899995 123 3347787765
No 300
>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=61.59 E-value=3.1 Score=49.43 Aligned_cols=95 Identities=11% Similarity=0.033 Sum_probs=62.2
Q ss_pred CCCCCEEEEEeCC-ceeeeccCCCCCCcccceeEEEeccCCCCCccceEEEEEeeCCCCCCCCCccceeEEecCcccccc
Q 001696 20 GSASPFAEVDFLN-QLSKTKTIPKNLNPVWNQKLLFDFDQTKSHNHLRIEVSIYHHERRPIPGRHFLGRVRIPCSNLVRK 98 (1026)
Q Consensus 20 g~~dpyv~v~~~~-~~~~T~~~~~t~nP~Wne~f~f~~~~~~~~~~~~L~~~V~d~d~~~~~~d~~lG~~~i~l~~l~~~ 98 (1026)
...+||+.|.+.- +...+.+.+.+..|.|+++|...+... ..+.|.|++ +. ....+.+.-.+.+..+++...
T Consensus 26 ~al~~y~~v~vk~~~~~~~~~~~~~~~~~~~~~F~~~v~~~-----~~~~i~v~~-~~-~~~~~~~~a~~~~~~e~~k~~ 98 (694)
T KOG0694|consen 26 QALQPYLAVELKVKQGAENMTKVELRIPELRETFHVEVVAG-----GAKNIIVLL-KS-PDPKALSEAQLSLQEESQKLL 98 (694)
T ss_pred hhhhhhheeccceeecccccCCCCCCCchhhhheeeeeecC-----CceEEEEEe-cC-CcchhhHHHhHHHHHHHHHHH
Confidence 4578999999854 444666788999999999999996654 489999999 22 223444455555555554433
Q ss_pred CCceeEEeeccccccccccccccceeEEec
Q 001696 99 GEEVYQRFPLEKKWFLSSVKGEVGLKIYIS 128 (1026)
Q Consensus 99 ~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~ 128 (1026)
......|..+++. |.+...+.+.
T Consensus 99 ~~~~~~w~~~~~~-------g~~~~~~~~~ 121 (694)
T KOG0694|consen 99 ALEQRLWVLIEEL-------GTLLKPAALT 121 (694)
T ss_pred hhhhhhccccccc-------cceeeeeccc
Confidence 3335667776653 5666555443
No 301
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=61.49 E-value=40 Score=33.92 Aligned_cols=62 Identities=8% Similarity=0.067 Sum_probs=43.8
Q ss_pred EEEEeeeecCCCCceeecEEEEEeeCC---CCEEEEEEEeCCCCCCCCccCCCCCCCCCeeEEEEEEccc
Q 001696 647 KWVRTRTILDTFNPKWNEQYTWEVYDP---CTVITLGVFDNCHLGGGEKQNGSSAVRDSRIGKVRIRLST 713 (1026)
Q Consensus 647 ~~~~T~~~~~t~~P~wne~~~~~v~~~---~~~l~i~v~d~~~~~~~~~~~~~~~~~~~~lG~~~i~l~~ 713 (1026)
..+.|.+..++.+|.|+|++.+.+... ..-|.++.++.+.-... ........+|..-+||-+
T Consensus 54 ~~~~S~V~yHnk~P~f~DEiKi~LP~~l~~~hHLlFtF~Hvs~~~k~-----~~~~~e~~~Gys~lPL~~ 118 (179)
T cd08696 54 TEAYTAVTYHNKSPDFYDEIKIKLPADLTDNHHLLFTFYHISCQKKQ-----EGGSVETPIGYTWLPLLR 118 (179)
T ss_pred eeEEEEEEEeCCCCcccceEEEEcCCCCCCCeEEEEEEEEeeccccc-----cCCCccceEEEEEEeeec
Confidence 458899999999999999999988743 44699999986542100 001134668888888765
No 302
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=60.42 E-value=20 Score=44.25 Aligned_cols=18 Identities=22% Similarity=0.447 Sum_probs=12.9
Q ss_pred HHHhhhhhHHHHHHHhhh
Q 001696 979 MVLYTTPFKVVALLAGLY 996 (1026)
Q Consensus 979 i~l~~iP~r~i~l~~g~~ 996 (1026)
|-++|||.+||+|++-.|
T Consensus 89 ~~~~~~p~~~~~~~~~~~ 106 (697)
T PF09726_consen 89 ICLFFIPVHWLFFAASTY 106 (697)
T ss_pred HHHHHHHHHHHHHHHhHH
Confidence 336669999998886544
No 303
>KOG2419 consensus Phosphatidylserine decarboxylase [Lipid transport and metabolism]
Probab=55.91 E-value=2.6 Score=48.89 Aligned_cols=174 Identities=13% Similarity=0.088 Sum_probs=96.8
Q ss_pred EEEEEEEEeEecCCCC----CCCCCCcEEEEEECCeEEEeeeecCCCCCCcccceeEEEeeCCCcCeEEEEEEEccCCCC
Q 001696 449 YLRVNVIEAQDIVPND----RNRLPEGFVKVQVGNQVLKTKICPTPTTNPLWNEDLVFVAAEPFEEQLFLTVEDRVHASK 524 (1026)
Q Consensus 449 ~l~V~I~~a~~L~~~d----~~~~~dpyV~v~lg~~~~kT~~~~~~t~nP~wne~f~f~v~~~~~~~L~i~V~d~d~~~~ 524 (1026)
...++++.|.+++... ..-..++++...++.+.++|+.. ..+.+|+|||. .+.+.+.+. +..-.
T Consensus 281 i~ll~lI~a~~~~~i~~~~~~~f~~~~~~itsf~~~~frt~~~-~~~e~piyNe~-~~E~~~Fqs----------n~~l~ 348 (975)
T KOG2419|consen 281 IALLTLIGAEMKYDIVEDVAKLFKDKWLAITSFGEQTFRTEIS-DDTEKPIYNED-EREDSDFQS----------NRYLG 348 (975)
T ss_pred hHHHHHhhhhcccchhhhhhhccCCCchheeecchhhhhhhhh-ccccccccccc-ccccccchh----------hHHHh
Confidence 3444555666553221 11235799999999999999999 79999999997 555444322 11224
Q ss_pred CceeEEEEEeCcccccccCCCCccceeEEcccCCCCchhhhhhccccccceEEEEEEecCCccccCCcccccCCcccccc
Q 001696 525 DEVLGKISLPLHIFEKRLDHRPVHSRWFNLEKFGFGAIEADRRKELKFSSRVHLRVCLEGGYHVLDESTMYISDQRPTAK 604 (1026)
Q Consensus 525 d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~~~~~~~~~~~~~~~~~~~g~l~l~~~~~~~~~~~~~~~~~~~d~~~~~~ 604 (1026)
..++|.|..++.+-+.. |..+...... .+ +..|.
T Consensus 349 ~kiv~~~~~~lndS~A~----------f~vq~~~sn~-------------------~~-----~~pE~------------ 382 (975)
T KOG2419|consen 349 NKIVGYCELDLNDSYAN----------FVVQRAKSNF-------------------FI-----SEPES------------ 382 (975)
T ss_pred hhccccccccccchhhh----------hhhhhhhccc-------------------cc-----cCccc------------
Confidence 55677777777763221 1111111000 00 00000
Q ss_pred ccCCCCceEEEEEEEEecCCCCCccCC--CCCCcCcEEEEEECCEEEEeeeecCCCCceeecEEEEEeeCCC--CEEEEE
Q 001696 605 QLWKPPVGILEVGILGAQGLLPMKMKD--GRGSTDAYCIAKYGQKWVRTRTILDTFNPKWNEQYTWEVYDPC--TVITLG 680 (1026)
Q Consensus 605 ~~~~~~~g~L~v~v~~a~~L~~~~~~~--~~~~~dpyv~v~~g~~~~~T~~~~~t~~P~wne~~~~~v~~~~--~~l~i~ 680 (1026)
.++.+.+..-...+|++.+..+ ..-..||+.++.+|...+.+..-....+|.+++.-.+.+.+-. -.+.+.
T Consensus 383 -----~~~sfnl~~~a~sn~~a~r~~~S~T~~em~~~~~~~vG~~~~s~sie~~v~~~~c~~~~~~s~~d~~~~fk~sf~ 457 (975)
T KOG2419|consen 383 -----TCKSFNLLDPASSNLPALRNRLSKTNYEMDPFIVIVVGSRFFSCSIEDPVETEECFAKRILSIVDYEEDFKLSFS 457 (975)
T ss_pred -----cceEEEeecCCcccchhhhhccCccccccCchhHhhhhhHHhhhhhhccccchhhhhhhcccccccccCceEeee
Confidence 0011111111122333322211 1347899999999988888888888888888876666666543 345555
Q ss_pred EEeCC
Q 001696 681 VFDNC 685 (1026)
Q Consensus 681 v~d~~ 685 (1026)
+++..
T Consensus 458 ~~~~l 462 (975)
T KOG2419|consen 458 EFSDL 462 (975)
T ss_pred hHHHH
Confidence 55544
No 304
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=55.70 E-value=64 Score=32.67 Aligned_cols=65 Identities=9% Similarity=0.072 Sum_probs=44.5
Q ss_pred EEEEeeeecCCCCceeecEEEEEeeC---CCCEEEEEEEeCCCCCCCCccCCCCCCCCCeeEEEEEEccc
Q 001696 647 KWVRTRTILDTFNPKWNEQYTWEVYD---PCTVITLGVFDNCHLGGGEKQNGSSAVRDSRIGKVRIRLST 713 (1026)
Q Consensus 647 ~~~~T~~~~~t~~P~wne~~~~~v~~---~~~~l~i~v~d~~~~~~~~~~~~~~~~~~~~lG~~~i~l~~ 713 (1026)
..+.|.+..++.+|.|+|++.+.+.- +..-|.++.++.+.-... + ..........+|.+-+||-+
T Consensus 56 ~~~~s~V~yh~k~P~f~dEiKI~LP~~l~~~hHLlFtFyHvsc~~~~-k-~~~~~~~e~~~Gys~lPLl~ 123 (185)
T cd08697 56 TSAYAAVLHHNQNPEFYDEIKIELPTQLHEKHHLLFTFYHVSCDINK-K-GKKKDGVETPVGYAWLPLLK 123 (185)
T ss_pred eEEEEEEEEcCCCCccceeEEEecCCcCCCCeeEEEEEEeecccccc-c-cccCCCccceEEEEEEeeec
Confidence 46889999999999999999988874 345699999987632100 0 00001234678888888876
No 305
>KOG1792 consensus Reticulon [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.70 E-value=75 Score=33.39 Aligned_cols=59 Identities=10% Similarity=0.015 Sum_probs=35.1
Q ss_pred HHHhhhHhHhhhccccCchhHHHHHHHHHHHHHHHhhhhhHHHHHHHhhhhhcCCCCCC
Q 001696 947 DIATQGERFQSLLSWRDPRATALFILFSLCAAMVLYTTPFKVVALLAGLYYLRHPRFRS 1005 (1026)
Q Consensus 947 ~~a~~le~~~~l~~w~~p~~t~~~~~~l~~~~i~l~~iP~r~i~l~~g~~~~r~P~~~~ 1005 (1026)
.++..+-.++.++.=+|+..+..+.+.+++++.+--+.-+-.++.++-+..+.=|.+..
T Consensus 132 ~in~~l~~l~~ia~~~d~~~~lk~~v~lw~lS~vGs~fn~lTll~ig~v~~~TvP~~YE 190 (230)
T KOG1792|consen 132 EINQALSELRDIALGRDLKDFLKVAVGLWILSYVGSLFNFLTLLYIGLVLLFTVPVLYE 190 (230)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccchhH
Confidence 45556666677777788888888888888777765443333333333333334454443
No 306
>PF04842 DUF639: Plant protein of unknown function (DUF639); InterPro: IPR006927 The sequences in this family are plant proteins of unknown function.
Probab=53.09 E-value=20 Score=43.04 Aligned_cols=62 Identities=19% Similarity=0.303 Sum_probs=46.1
Q ss_pred hhHHHHHHHHHhhhHhHhhhccccCchhHHHHHHHHHHH---HHHHhhhhhHHHHHHHhhhhhcC
Q 001696 939 GRIQTVVGDIATQGERFQSLLSWRDPRATALFILFSLCA---AMVLYTTPFKVVALLAGLYYLRH 1000 (1026)
Q Consensus 939 ~~vQ~~l~~~a~~le~~~~l~~w~~p~~t~~~~~~l~~~---~i~l~~iP~r~i~l~~g~~~~r~ 1000 (1026)
.=++..|--+..+..+++.+..|.+|..|..|+++.+.+ ..+-|++|.-+++++.+....||
T Consensus 490 av~kELL~Pl~~i~~~~~~l~~We~P~kt~~Fl~~~~~iI~r~wl~Y~~p~~Ll~~a~~Ml~~r~ 554 (683)
T PF04842_consen 490 AVMKELLFPLIEIAKWLQKLASWEEPLKTLVFLALFLYIIYRGWLGYIFPAFLLFSAVFMLWLRY 554 (683)
T ss_pred HHHHhccccHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445556677788899999999999999998776644433 44678889887777766665554
No 307
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=52.31 E-value=30 Score=34.93 Aligned_cols=56 Identities=16% Similarity=0.261 Sum_probs=35.7
Q ss_pred eccCCCCCCcccceeEEEeccCCCCCccceEEEEEeeCCCCC---CCCCccceeEEecCc
Q 001696 37 TKTIPKNLNPVWNQKLLFDFDQTKSHNHLRIEVSIYHHERRP---IPGRHFLGRVRIPCS 93 (1026)
Q Consensus 37 T~~~~~t~nP~Wne~f~f~~~~~~~~~~~~L~~~V~d~d~~~---~~~d~~lG~~~i~l~ 93 (1026)
|.++....+|.|+|+|...+.. +...+..|.|+++|.+-.. ......+|.+.+||-
T Consensus 56 ~sv~~~~k~p~f~deiKi~LP~-~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~ 114 (178)
T cd08679 56 TSVVYYHKNPVFNDEIKIQLPA-DLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLM 114 (178)
T ss_pred EEEEEcCCCCCCceeEEEecCC-ccCCCeEEEEEEEccccccccCCCccceEEEEEEecc
Confidence 4444444899999999999843 2224578999999943221 122446676666644
No 308
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]
Probab=51.41 E-value=30 Score=42.75 Aligned_cols=86 Identities=17% Similarity=0.271 Sum_probs=68.6
Q ss_pred CCcEEEEEECCe-eeEeeeecCC-CCCeEeEEEEEEecCCCCCeEEEEEEeCCCCCCCceeEEEEEEccccCCCCCCCCC
Q 001696 306 CDPYVEVKMGNY-KGRTKHFEKR-MNPEWNQVFAFSKERIQSSMLEVFLKDKEMVGRDDYLGRVAFDLNEVPTRVPPDSP 383 (1026)
Q Consensus 306 ~dpyv~v~~~~~-~~kT~~~~~t-~nP~wne~f~f~v~~~~~~~L~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~ 383 (1026)
.++|+.+.+... ..+|....+. .+|.|.+.|...+.... ..+.+.+.+.+..|...++|.+.++...+..+...+
T Consensus 138 ~e~Ylt~~l~~~~~~~t~~~~~f~e~s~~~f~~~~~~~h~~-g~v~~~~~~~~~~G~s~~w~~v~~s~~~~~~~~~~~-- 214 (887)
T KOG1329|consen 138 LENYLTVVLHKARYRRTHVIYEFLENSRWSFSFDIGFAHKA-GYVIFRVKGARVPGWSKRWGRVKISFLQYCSGHRIG-- 214 (887)
T ss_pred ccchheeeechhhhhchhhhhcccccchhhhhccccccccc-cEEEEeecCCccccceeEEEEeccchhhhhcccccc--
Confidence 488999988775 4567766666 78999999988877663 689999999998877899999999999998764444
Q ss_pred CCCEEEEeecCCCC
Q 001696 384 LAPQWYRLEDRRGE 397 (1026)
Q Consensus 384 ~~~~w~~L~~~~~~ 397 (1026)
.|+++...++.
T Consensus 215 ---~~~~Il~~d~~ 225 (887)
T KOG1329|consen 215 ---GWFPILDNDGK 225 (887)
T ss_pred ---ceeeeeccCCc
Confidence 89998876553
No 309
>TIGR02302 aProt_lowcomp conserved hypothetical protein TIGR02302. Members of this family are long (~850 residue) bacterial proteins from the alpha Proteobacteria. Each has 2-3 predicted transmembrane helices near the N-terminus and a long C-terminal region that includes stretches of Gln/Gly-rich low complexity sequence, predicted by TMHMM to be outside the membrane. In Bradyrhizobium japonicum, two tandem reading frames are together homologous the single members found in other species; the cutoffs scores are set low enough that the longer scores above the trusted cutoff and the shorter above the noise cutoff for this model.
Probab=51.27 E-value=1.3e+02 Score=38.14 Aligned_cols=51 Identities=14% Similarity=0.272 Sum_probs=31.1
Q ss_pred ccccCchhHHHHHHHHHHHHHHHhhhhhHH---HHHH--------Hhh-h--hhcCCCCCCCCCCch
Q 001696 959 LSWRDPRATALFILFSLCAAMVLYTTPFKV---VALL--------AGL-Y--YLRHPRFRSKLPSVP 1011 (1026)
Q Consensus 959 ~~w~~p~~t~~~~~~l~~~~i~l~~iP~r~---i~l~--------~g~-~--~~r~P~~~~~~p~~~ 1011 (1026)
+..+||++-..++++++++++++.. +++. --.+ .+. + ++.+|.|+.+ |+..
T Consensus 133 ~a~~DP~aLR~~~~l~lv~a~~~a~-~~~~grla~Af~~~~~~~~~~~r~daWVtPPaYTGk-PPi~ 197 (851)
T TIGR02302 133 LPIHDPWGLRALVVLLLVAAFAYSG-EERSGRIMDAFDWKPAMSPSTARIDAWVTPPVYTGR-APIF 197 (851)
T ss_pred ccccCcHHHHHHHHHHHHHHHHHhC-ccccchHHHHhcCCCccCCCCCeeEEEeCCCCcCCC-CCEe
Confidence 4669999999877777777775444 3322 1111 111 0 4679999976 5553
No 310
>PF04281 Tom22: Mitochondrial import receptor subunit Tom22 ; InterPro: IPR005683 The mitochondrial protein translocase family, which is responsible for movement of nuclear encoded pre-proteins into mitochondria, is very complex with at least 19 components. These proteins include several chaperone proteins, four proteins of the outer membrane translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family represents the Tom22 proteins []. The N-terminal region of Tom22 has been shown to have chaperone-like activity, and the C-terminal region faces the intermembrane face []. ; GO: 0006886 intracellular protein transport, 0005741 mitochondrial outer membrane
Probab=49.90 E-value=69 Score=30.60 Aligned_cols=39 Identities=13% Similarity=0.237 Sum_probs=25.4
Q ss_pred ChhHHHHHHHHHHHHH-hhHHHHHHHHHh-hhHhHhhhccc
Q 001696 923 THDIVRIRYDRLRSVA-GRIQTVVGDIAT-QGERFQSLLSW 961 (1026)
Q Consensus 923 ~~~~~~~r~~~l~~~~-~~vQ~~l~~~a~-~le~~~~l~~w 961 (1026)
..+++.+|+-+|+++. ..+.+.+..+++ ....+++++++
T Consensus 49 ~dETl~ERl~aLkdi~P~~~R~~i~~~~~~~~~~~k~~~~~ 89 (137)
T PF04281_consen 49 EDETLLERLWALKDIFPPSVRNWISSTVSTTSSAVKSLFSF 89 (137)
T ss_pred ccccHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4688999999999998 445555544443 34444555554
No 311
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=49.57 E-value=52 Score=33.13 Aligned_cols=40 Identities=10% Similarity=0.093 Sum_probs=31.8
Q ss_pred eEEEeeeecCCCCCCcccceeEEEeeCC--CcCeEEEEEEEcc
Q 001696 480 QVLKTKICPTPTTNPLWNEDLVFVAAEP--FEEQLFLTVEDRV 520 (1026)
Q Consensus 480 ~~~kT~~~~~~t~nP~wne~f~f~v~~~--~~~~L~i~V~d~d 520 (1026)
..+.|.+. .++.+|.|+|++.+.+... ....|.|+.++..
T Consensus 54 ~~~~S~V~-yHnk~P~f~DEiKi~LP~~l~~~hHLlFtF~Hvs 95 (179)
T cd08696 54 TEAYTAVT-YHNKSPDFYDEIKIKLPADLTDNHHLLFTFYHIS 95 (179)
T ss_pred eeEEEEEE-EeCCCCcccceEEEEcCCCCCCCeEEEEEEEEee
Confidence 45678888 5899999999999887554 4558999999864
No 312
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=49.02 E-value=52 Score=33.14 Aligned_cols=54 Identities=17% Similarity=0.287 Sum_probs=36.2
Q ss_pred EEEeeeecCCCCCCcccceeEEEeeCC--CcCeEEEEEEEccCC-----CCCceeEEEEEeCc
Q 001696 481 VLKTKICPTPTTNPLWNEDLVFVAAEP--FEEQLFLTVEDRVHA-----SKDEVLGKISLPLH 536 (1026)
Q Consensus 481 ~~kT~~~~~~t~nP~wne~f~f~v~~~--~~~~L~i~V~d~d~~-----~~d~~lG~~~i~l~ 536 (1026)
.+.|-+. .+ .+|.|+|+|.+.+... ....|.|++++.... .....+|.+.++|-
T Consensus 54 ~~~sv~~-~~-k~p~f~deiKi~LP~~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~ 114 (178)
T cd08679 54 EYTSVVY-YH-KNPVFNDEIKIQLPADLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLM 114 (178)
T ss_pred eEEEEEE-cC-CCCCCceeEEEecCCccCCCeEEEEEEEccccccccCCCccceEEEEEEecc
Confidence 3444444 34 8999999999988544 356899999997532 22455666666654
No 313
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=46.72 E-value=75 Score=32.16 Aligned_cols=39 Identities=10% Similarity=0.094 Sum_probs=31.6
Q ss_pred eeEeeeecCCCCCeEeEEEEEEe--cCCCCCeEEEEEEeCC
Q 001696 318 KGRTKHFEKRMNPEWNQVFAFSK--ERIQSSMLEVFLKDKE 356 (1026)
Q Consensus 318 ~~kT~~~~~t~nP~wne~f~f~v--~~~~~~~L~v~V~d~~ 356 (1026)
...|.+..++.+|.|+|++.+.+ .......|.|+.++..
T Consensus 57 ~~~s~V~yh~k~P~f~dEiKI~LP~~l~~~hHLlFtFyHvs 97 (185)
T cd08697 57 SAYAAVLHHNQNPEFYDEIKIELPTQLHEKHHLLFTFYHVS 97 (185)
T ss_pred EEEEEEEEcCCCCccceeEEEecCCcCCCCeeEEEEEEeec
Confidence 57888999999999999998876 3334678999999864
No 314
>PF07162 B9-C2: Ciliary basal body-associated, B9 protein; InterPro: IPR010796 Proteins in this entry include the MSK1 protein (Q9NXB0 from SWISSPROT) and other known or predicted flagellar basal body proteome components [] or cilia-containing species. Although the function is unknown, a cilia-specific role has been suggested for the poorly characterised B9 domain [, , ]. Mutations in MSK1 have been shown to cause Meckel syndrome type 1, a severe foetal development disorder that has been reported in most populations.
Probab=44.96 E-value=2.5e+02 Score=27.97 Aligned_cols=81 Identities=17% Similarity=0.085 Sum_probs=55.7
Q ss_pred EEEEEEEeEecCCCCCCCCCCcEEEEEE----------CCe-EEEeeeecC----CCCCCcccceeEEEeeCC--C-cCe
Q 001696 450 LRVNVIEAQDIVPNDRNRLPEGFVKVQV----------GNQ-VLKTKICPT----PTTNPLWNEDLVFVAAEP--F-EEQ 511 (1026)
Q Consensus 450 l~V~I~~a~~L~~~d~~~~~dpyV~v~l----------g~~-~~kT~~~~~----~t~nP~wne~f~f~v~~~--~-~~~ 511 (1026)
+.-.|..|.+... .+-||+-.+ |.. ...|.+... +...-.||.-|++.+... . -..
T Consensus 4 v~G~I~~a~~f~~------~~l~~~y~~~~g~~W~~~~g~~~~G~Tq~~~~~~~~~~~~~~f~~P~d~~~~~~~~~gwP~ 77 (168)
T PF07162_consen 4 VIGEIESAEGFEE------DNLYCRYQLVHGPDWKLISGLSLEGQTQISKSSSYGNDDVAVFNHPFDLHFKSTNPQGWPQ 77 (168)
T ss_pred EEEEEEEEECCCC------CCEEEEEEEEeCCCeEECCCCcceEEcceeecCcccCCCceEEeccEEEEEEeCCCCCCce
Confidence 5556888887643 357888777 233 456665521 234578998888876443 2 258
Q ss_pred EEEEEEEccCCCCCceeEEEEEeCc
Q 001696 512 LFLTVEDRVHASKDEVLGKISLPLH 536 (1026)
Q Consensus 512 L~i~V~d~d~~~~d~~lG~~~i~l~ 536 (1026)
|.|+||..|.++++.+.|...+.|-
T Consensus 78 L~l~V~~~D~~gr~~~~GYG~~~lP 102 (168)
T PF07162_consen 78 LVLQVYSLDSWGRDRVEGYGFCHLP 102 (168)
T ss_pred EEEEEEEEcccCCeEEeEEeEEEeC
Confidence 9999999999999999987666553
No 315
>KOG0904 consensus Phosphatidylinositol 3-kinase catalytic subunit (p110) [Signal transduction mechanisms]
Probab=43.64 E-value=97 Score=38.33 Aligned_cols=110 Identities=17% Similarity=0.283 Sum_probs=70.4
Q ss_pred eEEEEEEEEecCCCCCccCCCCCCcCcEEEEEE----CCEE----EEeeeecCCCCceeecEEEEEee--C-C-CCEEEE
Q 001696 612 GILEVGILGAQGLLPMKMKDGRGSTDAYCIAKY----GQKW----VRTRTILDTFNPKWNEQYTWEVY--D-P-CTVITL 679 (1026)
Q Consensus 612 g~L~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~----g~~~----~~T~~~~~t~~P~wne~~~~~v~--~-~-~~~l~i 679 (1026)
..++|.++++.++-. ....|-+|.|.. |.+. ..|..+....+|.||+.++|++. | | ...|.|
T Consensus 343 ~~frI~l~~is~~n~------~~t~~~kV~V~~~lyhG~e~Lc~~~sTs~v~~~~~~~Wn~~leFDI~i~DLPr~ArLc~ 416 (1076)
T KOG0904|consen 343 RPFRIKLVGISKVNL------PETVDLKVFVEAGLYHGTEVLCKTRSTSEVPGCSFPLWNEWLEFDIYIKDLPRMARLCL 416 (1076)
T ss_pred CceEEEEeeccccCC------CcccceEEEEEEEEEECCeehhcccccCCCCCccchhccceeEeeeecCCCChhhhhee
Confidence 458899988876633 234566777654 5554 45666667889999999888886 3 3 456888
Q ss_pred EEEeCCCCCCCCc-----cCCCCCCCCCeeEEEEEEccc----ccCCceEeeeEeee
Q 001696 680 GVFDNCHLGGGEK-----QNGSSAVRDSRIGKVRIRLST----LEAHRIYTHSYPLL 727 (1026)
Q Consensus 680 ~v~d~~~~~~~~~-----~~~~~~~~~~~lG~~~i~l~~----l~~~~~~~~~~~L~ 727 (1026)
.|+---......+ ...+....+-.||.+.+.|-+ |+.|+..-+-|+..
T Consensus 417 ~i~~v~~~~~s~~~s~~~~~kk~k~~~~plaWvN~~lfD~kd~LrtG~~~Lh~W~~~ 473 (1076)
T KOG0904|consen 417 AIYAVKAKAKSKKNSAESTKKKSKKEHCPLAWVNLMLFDHKDQLRTGEYVLHMWPSV 473 (1076)
T ss_pred eeeEeechhccccccchhhhhccccccCceEEEeeeeeechhhhhcCceEEEecCCC
Confidence 8876421110000 011223457789999999877 57787666666653
No 316
>PF10409 PTEN_C2: C2 domain of PTEN tumour-suppressor protein; InterPro: IPR014020 Tensins constitute an eukaryotic family of lipid phosphatases that are defined by the presence of two adjacent domains: a lipid phosphatase domain and a C2-like domain. The tensin-type C2 domain has a structure similar to the classical C2 domain (see IPR000008 from INTERPRO) that mediates the Ca2+-dependent membrane recruitment of several signalling proteins. However the tensin-type C2 domain lacks two of the three conserved loops that bind Ca2+, and in this respect it is similar to the C2 domains of PKC-type [, ]. The tensin-type C2 domain can bind phopholipid membranes in a Ca2+ independent manner []. In the tumour suppressor protein PTEN, the best characterised member of the family, the lipid phosphatase domain was shown to specifically dephosphorylate the D3 position of the inositol ring of the lipid second messenger, phosphatydilinositol-3-4-5-triphosphate (PIP3). The lipid phosphatase domain contains the signature motif HCXXGXXR present in the active sites of protein tyrosine phosphatases (PTPs) and dual specificity phosphatases (DSPs). Furthermore, two invariant lysines are found only in the tensin-type phosphatase motif (HCKXGKXR) and are suspected to interact with the phosphate group at position D1 and D5 of the inositol ring [, ]. The C2 domain is found at the C terminus of the tumour suppressor protein PTEN (phosphatidyl-inositol triphosphate phosphatase). This domain may include a CBR3 loop, indicating a central role in membrane binding. This domain associates across an extensive interface with the N-terminal phosphatase domain DSPc suggesting that the C2 domain productively positions the catalytic part of the protein on the membrane. The crystal structure of the PTEN tumour suppressor has been solved []. The lipid phosphatase domain has a structure similar to the dual specificity phosphatase (see IPR000387 from INTERPRO). However, PTEN has a larger active site pocket that could be important to accommodate PI(3,4,5)P3. Proteins known to contain a phosphatase and a C2 tensin-type domain are listed below: Tensin, a focal-adhesion molecule that binds to actin filaments. It may be involved in cell migration, cartilage development and in linking signal transduction pathways to the cytoskeleton. Phosphatase and tensin homologue deleted on chromosome 10 protein (PTEN). It antagonizes PI 3-kinase signalling by dephosphorylating the 3-position of the inositol ring of PI(3,4,5)P3 and thus inactivates downstream signalling. It plays major roles both during development and in the adult to control cell size, growth, and survival. Auxilin. It binds clathrin heavy chain and promotes its assembly into regular cages. Cyclin G-associated kinase or auxilin-2. It is a potential regulator of clathrin-mediated membrane trafficking. ; GO: 0005515 protein binding; PDB: 3N0A_A 1D5R_A 3V0D_B 3V0H_B 3V0G_A 3V0F_B 3V0J_A 3V0I_A 3AWE_B 3AWG_C ....
Probab=43.31 E-value=2.8e+02 Score=26.20 Aligned_cols=88 Identities=9% Similarity=0.125 Sum_probs=54.6
Q ss_pred EEEEEEEeEecCCCCCCCCCCcEEEEEECCeEE-EeeeecCCCCCCcc-cceeEEEe--eCCCcCeEEEEEEEccC-CCC
Q 001696 450 LRVNVIEAQDIVPNDRNRLPEGFVKVQVGNQVL-KTKICPTPTTNPLW-NEDLVFVA--AEPFEEQLFLTVEDRVH-ASK 524 (1026)
Q Consensus 450 l~V~I~~a~~L~~~d~~~~~dpyV~v~lg~~~~-kT~~~~~~t~nP~w-ne~f~f~v--~~~~~~~L~i~V~d~d~-~~~ 524 (1026)
|.++=+.-.++|..+.++.+.||++|+-+++.. .|.... .. .... ...+.+.+ .-+....+.|.+++... ...
T Consensus 6 l~L~~I~l~~iP~f~~~~gc~p~i~I~~~~~~v~~~~~~~-~~-~~~~~~~~~~~~~~~~~~l~GDV~i~~~~~~~~~~~ 83 (134)
T PF10409_consen 6 LFLKSIILHGIPNFNSGGGCRPYIEIYNGGKKVFSTSKSY-ED-PKSYEQDSVIIELPKNLPLRGDVLIKFYHKRSSSMS 83 (134)
T ss_dssp EEEEEEEEES-TTSTTSSCCTEEEEEEETTEEEEETCCTC-CC-CCEEETTCEEEEEEEEEEEESEEEEEEEECETTECC
T ss_pred EEEEEEEEECCCccCCCCCEEEEEEEECCCccEEEeccce-ec-cccccceeEEEEeCCCCeEeCCEEEEEEeCCCcccc
Confidence 444444456777766677889999999988766 344331 11 1121 22233333 23346789999999863 456
Q ss_pred CceeEEEEEeCcccc
Q 001696 525 DEVLGKISLPLHIFE 539 (1026)
Q Consensus 525 d~~lG~~~i~l~~l~ 539 (1026)
+..+.++.+.-.-+.
T Consensus 84 ~~~~f~~~FnT~Fi~ 98 (134)
T PF10409_consen 84 KEKMFRFWFNTGFIE 98 (134)
T ss_dssp CEEEEEEEEEGGGSB
T ss_pred cCeEEEEEEeeeeee
Confidence 777888888877665
No 317
>KOG4111 consensus Translocase of outer mitochondrial membrane complex, subunit TOM22 [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.54 E-value=67 Score=30.10 Aligned_cols=54 Identities=15% Similarity=0.130 Sum_probs=32.4
Q ss_pred ChhHHHHHHHHHHHHH-hhHHHHHHHHHhhhHh-HhhhccccCchhHHHHHHHHHHH
Q 001696 923 THDIVRIRYDRLRSVA-GRIQTVVGDIATQGER-FQSLLSWRDPRATALFILFSLCA 977 (1026)
Q Consensus 923 ~~~~~~~r~~~l~~~~-~~vQ~~l~~~a~~le~-~~~l~~w~~p~~t~~~~~~l~~~ 977 (1026)
..+++.+|+..|+++. ..+.+.++..+..--+ ++++|.++ -.+.+++....+++
T Consensus 40 ~dETi~eRi~gLkEivp~g~R~~i~~~~~~av~~~kk~~~fs-g~a~Wi~tTt~lIL 95 (136)
T KOG4111|consen 40 EDETILERIWGLKEIVPQGRRSAIGATAGDAVFVVKKLYSFS-GKAAWIATTTFLIL 95 (136)
T ss_pred cchhHHHHHHhhHhhcchhhhhhhhhcchhHHHHHHHHHHhc-cchhHHHHHHHHHH
Confidence 4689999999999998 4466666666554443 34455443 34444444433333
No 318
>KOG4027 consensus Uncharacterized conserved protein [Function unknown]
Probab=41.09 E-value=1.3e+02 Score=29.17 Aligned_cols=69 Identities=22% Similarity=0.244 Sum_probs=43.8
Q ss_pred CcCcEEEEEE--CCEEEEeee-----------ecCCCCc-eeecEEEEEeeC--C--CCEEEEEEEeCCCCCCCCccCCC
Q 001696 635 STDAYCIAKY--GQKWVRTRT-----------ILDTFNP-KWNEQYTWEVYD--P--CTVITLGVFDNCHLGGGEKQNGS 696 (1026)
Q Consensus 635 ~~dpyv~v~~--g~~~~~T~~-----------~~~t~~P-~wne~~~~~v~~--~--~~~l~i~v~d~~~~~~~~~~~~~ 696 (1026)
.+|.||+... |+.|.-+.- .++-.|| +||-.|+..... | -..|.+.||-.|.+|
T Consensus 25 ~~dv~~ky~~Vag~DW~~~~Gpqegvsq~s~~~r~~~~~iv~n~Pievt~KstsPygWPqivl~vfg~d~~G-------- 96 (187)
T KOG4027|consen 25 ESDVCVKYSTVAGGDWKIINGPQEGVSQSSFSFRGADNQIVINLPIEVTLKSTSPYGWPQIVLNVFGKDHSG-------- 96 (187)
T ss_pred CCceEEEEEEEecCCceeccCcccchhhheeccccCCCceEEecceEEEeccCCCCCCceEEEEEecCCcCC--------
Confidence 5688888865 666633322 1223344 455444444442 3 236999999999875
Q ss_pred CCCCCCeeEEEEEEcccc
Q 001696 697 SAVRDSRIGKVRIRLSTL 714 (1026)
Q Consensus 697 ~~~~~~~lG~~~i~l~~l 714 (1026)
+|.+.|...|.+.--
T Consensus 97 ---~d~v~GYg~~hiP~~ 111 (187)
T KOG4027|consen 97 ---KDCVTGYGMLHIPTE 111 (187)
T ss_pred ---cceeeeeeeEecCcC
Confidence 899999988887653
No 319
>PF07162 B9-C2: Ciliary basal body-associated, B9 protein; InterPro: IPR010796 Proteins in this entry include the MSK1 protein (Q9NXB0 from SWISSPROT) and other known or predicted flagellar basal body proteome components [] or cilia-containing species. Although the function is unknown, a cilia-specific role has been suggested for the poorly characterised B9 domain [, , ]. Mutations in MSK1 have been shown to cause Meckel syndrome type 1, a severe foetal development disorder that has been reported in most populations.
Probab=40.43 E-value=2.8e+02 Score=27.56 Aligned_cols=81 Identities=21% Similarity=0.222 Sum_probs=55.0
Q ss_pred EEEEEEEecCCCCCccCCCCCCcCcEEEEEE--CCE---------EEEeeeecC-----CCCceeecEEEEEeeC--C--
Q 001696 614 LEVGILGAQGLLPMKMKDGRGSTDAYCIAKY--GQK---------WVRTRTILD-----TFNPKWNEQYTWEVYD--P-- 673 (1026)
Q Consensus 614 L~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~--g~~---------~~~T~~~~~-----t~~P~wne~~~~~v~~--~-- 673 (1026)
+.-.|.+|++... .+-||+-.+ |.. ...|.+.+. ...-.||--|++.... +
T Consensus 4 v~G~I~~a~~f~~---------~~l~~~y~~~~g~~W~~~~g~~~~G~Tq~~~~~~~~~~~~~~f~~P~d~~~~~~~~~g 74 (168)
T PF07162_consen 4 VIGEIESAEGFEE---------DNLYCRYQLVHGPDWKLISGLSLEGQTQISKSSSYGNDDVAVFNHPFDLHFKSTNPQG 74 (168)
T ss_pred EEEEEEEEECCCC---------CCEEEEEEEEeCCCeEECCCCcceEEcceeecCcccCCCceEEeccEEEEEEeCCCCC
Confidence 4456778887653 367998865 333 355555532 3345899887776653 3
Q ss_pred CCEEEEEEEeCCCCCCCCccCCCCCCCCCeeEEEEEEcccc
Q 001696 674 CTVITLGVFDNCHLGGGEKQNGSSAVRDSRIGKVRIRLSTL 714 (1026)
Q Consensus 674 ~~~l~i~v~d~~~~~~~~~~~~~~~~~~~~lG~~~i~l~~l 714 (1026)
-..|.|+||..|..+ ++.+.|...+.|..-
T Consensus 75 wP~L~l~V~~~D~~g-----------r~~~~GYG~~~lP~~ 104 (168)
T PF07162_consen 75 WPQLVLQVYSLDSWG-----------RDRVEGYGFCHLPTQ 104 (168)
T ss_pred CceEEEEEEEEcccC-----------CeEEeEEeEEEeCCC
Confidence 457999999999876 788998877777443
No 320
>COG4920 Predicted membrane protein [Function unknown]
Probab=38.96 E-value=2.5e+02 Score=28.47 Aligned_cols=13 Identities=15% Similarity=0.634 Sum_probs=6.9
Q ss_pred hhcCCCCCCCCCC
Q 001696 997 YLRHPRFRSKLPS 1009 (1026)
Q Consensus 997 ~~r~P~~~~~~p~ 1009 (1026)
.++.|.-..++|.
T Consensus 158 v~kfp~~~p~~pt 170 (249)
T COG4920 158 VFKFPPVAPRIPT 170 (249)
T ss_pred HhcCCCCcccCcc
Confidence 3455655555553
No 321
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=37.33 E-value=1.1e+02 Score=33.85 Aligned_cols=28 Identities=11% Similarity=0.203 Sum_probs=19.6
Q ss_pred hccccCchhHHHHHHHHHHHHHHHhhhh
Q 001696 958 LLSWRDPRATALFILFSLCAAMVLYTTP 985 (1026)
Q Consensus 958 l~~w~~p~~t~~~~~~l~~~~i~l~~iP 985 (1026)
++.+-++.+..+.+++.++.+|.-++.|
T Consensus 389 lgk~iNiiLalm~VlLvfVSTIa~~v~P 416 (455)
T KOG3850|consen 389 LGKFINIILALMTVLLVFVSTIANCVSP 416 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccH
Confidence 3466677777777777777777777766
No 322
>PF06219 DUF1005: Protein of unknown function (DUF1005); InterPro: IPR010410 This is a family of plant proteins with undetermined function.
Probab=36.58 E-value=1.8e+02 Score=33.07 Aligned_cols=109 Identities=19% Similarity=0.252 Sum_probs=64.9
Q ss_pred CCcEEEEEECCeEEEeeeec---CCCCC-Ccc---cceeEEEeeC-------C----CcCeEEEEEEEccC-----C-CC
Q 001696 469 PEGFVKVQVGNQVLKTKICP---TPTTN-PLW---NEDLVFVAAE-------P----FEEQLFLTVEDRVH-----A-SK 524 (1026)
Q Consensus 469 ~dpyV~v~lg~~~~kT~~~~---~~t~n-P~w---ne~f~f~v~~-------~----~~~~L~i~V~d~d~-----~-~~ 524 (1026)
+-+||+|++.+--.+|..+. ....+ |.- -..|+++-.+ + ....|+|.||.... . .+
T Consensus 36 spCfC~IrL~~fP~Qta~vPLi~~~~~~~p~~~~~Aa~F~Ld~s~l~~l~~~~~f~~~~~~L~i~VY~Gr~G~tCGv~~~ 115 (460)
T PF06219_consen 36 SPCFCEIRLKGFPSQTAPVPLISSSEPEPPDSHSLAASFHLDKSDLRRLLAKPCFYSPRPCLEISVYTGRRGSTCGVGNS 115 (460)
T ss_pred CCeEEEEecCCCCccceeeeeccCCCCCCCCcCCcceEEecCHHHHHHHhCCCccccCCceEEEEEEECCCCCccccccc
Confidence 46799999988777777664 11112 111 1235553211 1 12479999999653 2 46
Q ss_pred CceeEEEEEeCcccccccCCCCccceeEEcccCCCCchhhhhhccccccceEEEEEEecC
Q 001696 525 DEVLGKISLPLHIFEKRLDHRPVHSRWFNLEKFGFGAIEADRRKELKFSSRVHLRVCLEG 584 (1026)
Q Consensus 525 d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~~~~~~~~~~~~~~~~~~~g~l~l~~~~~~ 584 (1026)
..+||.+.++|.--......-..++.|+.+-....+. ......++|+.+..+.
T Consensus 116 ~klLG~v~vpldl~~ae~kp~v~hnGWi~iGk~~~~~-------~~~~~aeLHl~Vr~Ep 168 (460)
T PF06219_consen 116 GKLLGKVRVPLDLKWAEGKPVVFHNGWISIGKNKQGS-------GKSPSAELHLVVRAEP 168 (460)
T ss_pred ceEEEEEEEEeccccccCCeeEEEccceecCCCCCCC-------CCCCcceEEEEEeccC
Confidence 7899999999873222222335678999997764211 1123567888776543
No 323
>PF02453 Reticulon: Reticulon; InterPro: IPR003388 Eukaryotic proteins of the reticulon (RTN) family all share an association with the endoplasmic reticulum (ER). Whereas amino-terminal regions are not related to one another, all reticulon proteins share a 200 amino acid residue region of sequence similarity at the C-terminal. This region contains two large hydrophobic regions separated by a 66 residue hydrophilic segment. The conserved hydrophobic C-terminal portion has been shown to play an essential role in the association of reticulons with the ER membrane. The hydrophobic portions are supposed to be membrane-embedded and the hydrophilic 66 residue localized to the lumenal/extracellular face of the membrane. Most reticulons have a di-lysine ER retention motif at the C-terminal. Because of their likely association with the rough as well as the smooth ER, the reticulons might play some role in transport processes or in regulation of intracellular calcium levels. It has been suggested that the reticulons may be serving as ER-associated channel-like complexes [, , , ].; GO: 0005783 endoplasmic reticulum; PDB: 2KO2_A 2JV5_A 2G31_A.
Probab=35.34 E-value=12 Score=37.12 Aligned_cols=28 Identities=25% Similarity=0.530 Sum_probs=0.0
Q ss_pred HhhhccccCchhHHHHHHHHHHHHHHHh
Q 001696 955 FQSLLSWRDPRATALFILFSLCAAMVLY 982 (1026)
Q Consensus 955 ~~~l~~w~~p~~t~~~~~~l~~~~i~l~ 982 (1026)
+++++.|+||..|..++.++.++.+++.
T Consensus 1 V~dll~W~~~~~S~~v~~~~~~~~~l~~ 28 (169)
T PF02453_consen 1 VADLLLWRDPKKSGIVFGAILLFWLLFW 28 (169)
T ss_dssp ----------------------------
T ss_pred CceeeEecCCCchHHHHHHHHHHHHHHH
Confidence 4688999999999987776665433333
No 324
>KOG3543 consensus Ca2+-dependent activator protein [Signal transduction mechanisms]
Probab=33.75 E-value=2.8e+02 Score=32.78 Aligned_cols=102 Identities=22% Similarity=0.293 Sum_probs=69.7
Q ss_pred eeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeEeeeecCCCCCeEeEEEEEEecCCCCCeEEEEEEeCCCC---CC
Q 001696 284 MSYLYVRVVKAKDLPPSSITGSCDPYVEVKMGNYKGRTKHFEKRMNPEWNQVFAFSKERIQSSMLEVFLKDKEMV---GR 360 (1026)
Q Consensus 284 ~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~v~V~d~~~~---~~ 360 (1026)
.-.+.|.|.+..+|+....+ .=.||...+.+.+.+|.... ...|.|+..=.|....+ -+.+.+.+|..... -.
T Consensus 340 a~smevvvmevqglksvapn--rivyctmevegeklqtdqae-askp~wgtqgdfstthp-lpvvkvklftestgvlale 415 (1218)
T KOG3543|consen 340 ALSMEVVVMEVQGLKSVAPN--RIVYCTMEVEGEKLQTDQAE-ASKPKWGTQGDFSTTHP-LPVVKVKLFTESTGVLALE 415 (1218)
T ss_pred EeeeeEEEeeeccccccCCC--eeEEEEEEecccccccchhh-hcCCCCCcCCCcccCCC-CceeEEEEEeecceeEEee
Confidence 34578889999999765432 24699999999888887654 45799998777776655 35778888875431 15
Q ss_pred CceeEEEEEEccccCCCCCCCCCCCCEEEEeecCCC
Q 001696 361 DDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLEDRRG 396 (1026)
Q Consensus 361 d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~ 396 (1026)
|.-+|.+.+. +.++++..+.|+.+.-++.
T Consensus 416 dkelgrvil~-------ptpns~ks~ewh~mtvpkn 444 (1218)
T KOG3543|consen 416 DKELGRVILQ-------PTPNSAKSPEWHTMTVPKN 444 (1218)
T ss_pred chhhCeEEEe-------cCCCCcCCccceeeecCCC
Confidence 5667776653 2233445568998877654
No 325
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.56 E-value=1.2e+02 Score=27.90 Aligned_cols=33 Identities=6% Similarity=0.266 Sum_probs=17.6
Q ss_pred hhHHHHHHHHHhhhHhHhhhccccCchhHHHHH
Q 001696 939 GRIQTVVGDIATQGERFQSLLSWRDPRATALFI 971 (1026)
Q Consensus 939 ~~vQ~~l~~~a~~le~~~~l~~w~~p~~t~~~~ 971 (1026)
..+|..-..+-..--+++--+-|++-+...++.
T Consensus 67 d~L~~~as~F~~~A~klkrk~wWkn~Km~~il~ 99 (116)
T KOG0860|consen 67 DQLQAGASQFEKTAVKLKRKMWWKNCKMRIILG 99 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444555667888866655433
No 326
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=32.33 E-value=1.4e+02 Score=26.12 Aligned_cols=31 Identities=6% Similarity=0.285 Sum_probs=15.9
Q ss_pred hhHHHHHHHHHhhhHhHhhhccccCchhHHH
Q 001696 939 GRIQTVVGDIATQGERFQSLLSWRDPRATAL 969 (1026)
Q Consensus 939 ~~vQ~~l~~~a~~le~~~~l~~w~~p~~t~~ 969 (1026)
..++..-..+...-.+++.-.-|+.-+...+
T Consensus 41 ~~L~~~a~~F~k~a~~l~r~~~~~~~k~~~i 71 (89)
T PF00957_consen 41 EELSDNAKQFKKNAKKLKRKMWWRNYKLYII 71 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444444444555556667766544443
No 327
>PF14909 SPATA6: Spermatogenesis-assoc protein 6
Probab=31.93 E-value=3e+02 Score=26.39 Aligned_cols=86 Identities=19% Similarity=0.297 Sum_probs=0.0
Q ss_pred EEEEEEEEeEecCCCCCCCCCCcEEEEEECCeEEEeeeecCCCCCCcccceeEEE-----eeCC-------CcCeEEEEE
Q 001696 449 YLRVNVIEAQDIVPNDRNRLPEGFVKVQVGNQVLKTKICPTPTTNPLWNEDLVFV-----AAEP-------FEEQLFLTV 516 (1026)
Q Consensus 449 ~l~V~I~~a~~L~~~d~~~~~dpyV~v~lg~~~~kT~~~~~~t~nP~wne~f~f~-----v~~~-------~~~~L~i~V 516 (1026)
.|.|+-+.|-|.--.+.+ |.|..|++-|+.++|+.. ...-=-.++|.|.|. +.++ ..+.+.|++
T Consensus 3 eL~i~aVTCPGv~L~~~~---~vyL~v~~lg~~~~T~~~-ppvFPllfhek~~FeK~F~~~~dp~~l~~~Le~e~~~iEL 78 (140)
T PF14909_consen 3 ELEIHAVTCPGVWLCDKG---DVYLSVCILGQYKRTRCL-PPVFPLLFHEKFRFEKVFPNAVDPAQLADLLEDETVYIEL 78 (140)
T ss_pred EEEEEEEecCCeEeCCCC---CEEEEEEEcccEeecccC-CCcCCeeEeeEEEeEEEecCCCCHHHHHHHhhcCcEEEEE
Q ss_pred EEccCCCCCceeEEEEEeCcccc
Q 001696 517 EDRVHASKDEVLGKISLPLHIFE 539 (1026)
Q Consensus 517 ~d~d~~~~d~~lG~~~i~l~~l~ 539 (1026)
+...... +..|+..+-++.++.
T Consensus 79 iQl~~~~-g~iLA~ye~n~rDfL 100 (140)
T PF14909_consen 79 IQLVPPA-GEILAYYEENTRDFL 100 (140)
T ss_pred EEEeCCC-CcEEEEEeccccceE
No 328
>PF08151 FerI: FerI (NUC094) domain; InterPro: IPR012968 The ferlin gene family are characterised by multiple tandem C2 domains and a C-terminal transmembrane domain. They are found in a wide range of species and their function remains unknown, however, mutations in its two most well-characterised members, dysferlin and otoferlin, have been implicated in human disease []. This domain is present in proteins of the Ferlin family, which includes Otoferlin, Myoferlin and Dysferlin. It is often located between two C2 domains [].
Probab=30.84 E-value=66 Score=26.99 Aligned_cols=42 Identities=24% Similarity=0.261 Sum_probs=31.7
Q ss_pred CCCCCCEEEEeecCCCCC-cccceEEEEEEecccCchhhhhcc
Q 001696 381 DSPLAPQWYRLEDRRGEG-KVRGQTMLAIWMGTQADEAFAEAW 422 (1026)
Q Consensus 381 ~~~~~~~w~~L~~~~~~~-~~~G~i~l~~~~~~~~d~~~~~~~ 422 (1026)
++....+|..|.++.... ..+|.|.+++.....+|+.....+
T Consensus 11 ~H~~~~KW~~L~dP~D~~~G~kGYlKv~i~Vlg~GD~~~~~~~ 53 (72)
T PF08151_consen 11 DHQFYRKWALLTDPDDTSAGVKGYLKVDISVLGPGDEPPVEKK 53 (72)
T ss_pred CCeeEeceEEecCCCCCccCCceEEEEEEEEEcCCCcCCCCCC
Confidence 345667999999986542 478999999999888887655443
No 329
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=30.56 E-value=2.5e+02 Score=23.39 Aligned_cols=35 Identities=20% Similarity=0.301 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHhhhHhHhhhccc
Q 001696 927 VRIRYDRLRSVAGRIQTVVGDIATQGERFQSLLSW 961 (1026)
Q Consensus 927 ~~~r~~~l~~~~~~vQ~~l~~~a~~le~~~~l~~w 961 (1026)
...|.+.+.......+..+..++.-++++.+...|
T Consensus 18 ~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n~kW 52 (71)
T PF10779_consen 18 HEERIDKLEKRDAANEKDIKNLNKQLEKIKSNTKW 52 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666777788899999999999998
No 330
>PRK09459 pspG phage shock protein G; Reviewed
Probab=26.81 E-value=1.3e+02 Score=25.25 Aligned_cols=23 Identities=17% Similarity=0.402 Sum_probs=13.2
Q ss_pred HHHHHHhhhhhHHHHHHHhhhhhc
Q 001696 976 CAAMVLYTTPFKVVALLAGLYYLR 999 (1026)
Q Consensus 976 ~~~i~l~~iP~r~i~l~~g~~~~r 999 (1026)
..++++-++||=.++ +.++|.+|
T Consensus 40 m~~lviKLLPWLil~-~v~vW~~r 62 (76)
T PRK09459 40 MFALMIKLLPWLLLA-VVVVWVIR 62 (76)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHH
Confidence 334455568885444 45666555
No 331
>PHA01159 hypothetical protein
Probab=26.69 E-value=2e+02 Score=26.38 Aligned_cols=33 Identities=15% Similarity=0.144 Sum_probs=25.4
Q ss_pred HHHHHHHHhhHHHHHHHHHhhhHhHhhhccccC
Q 001696 931 YDRLRSVAGRIQTVVGDIATQGERFQSLLSWRD 963 (1026)
Q Consensus 931 ~~~l~~~~~~vQ~~l~~~a~~le~~~~l~~w~~ 963 (1026)
|..|+.++.--|..++.+++..+.+++.|-|-.
T Consensus 5 ~~~L~~I~~~~qt~~dFf~~~~d~i~~~fv~~~ 37 (114)
T PHA01159 5 YSALEFIANIGQTFLDFFDVAIDWIKNAFVYGA 37 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 456777777788888888888888888876633
No 332
>KOG0904 consensus Phosphatidylinositol 3-kinase catalytic subunit (p110) [Signal transduction mechanisms]
Probab=26.23 E-value=1.3e+02 Score=37.26 Aligned_cols=69 Identities=19% Similarity=0.229 Sum_probs=46.6
Q ss_pred ceEEEEeecCCCccCCCCCCCCCEEEEEe----CCc----eeeeccCCCCCCcccceeEEEeccCCCCCccceEEEEEee
Q 001696 2 KLVVEVVDAYDLMPKDGEGSASPFAEVDF----LNQ----LSKTKTIPKNLNPVWNQKLLFDFDQTKSHNHLRIEVSIYH 73 (1026)
Q Consensus 2 ~L~V~v~~a~~L~~~~~~g~~dpyv~v~~----~~~----~~~T~~~~~t~nP~Wne~f~f~~~~~~~~~~~~L~~~V~d 73 (1026)
.++|+++++.++. ...+.|-+|.|.. |++ ...|.-+..+.+|.||+..+|++.=.+--....|.|.||.
T Consensus 344 ~frI~l~~is~~n---~~~t~~~kV~V~~~lyhG~e~Lc~~~sTs~v~~~~~~~Wn~~leFDI~i~DLPr~ArLc~~i~~ 420 (1076)
T KOG0904|consen 344 PFRIKLVGISKVN---LPETVDLKVFVEAGLYHGTEVLCKTRSTSEVPGCSFPLWNEWLEFDIYIKDLPRMARLCLAIYA 420 (1076)
T ss_pred ceEEEEeeccccC---CCcccceEEEEEEEEEECCeehhcccccCCCCCccchhccceeEeeeecCCCChhhhheeeeeE
Confidence 4678888887762 2345566776665 332 3455556668899999999998765443344568888887
No 333
>TIGR00986 3a0801s05tom22 mitochondrial import receptor subunit Tom22. translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family is specific for the Tom22 proteins.
Probab=24.67 E-value=3e+02 Score=26.50 Aligned_cols=39 Identities=13% Similarity=0.088 Sum_probs=25.8
Q ss_pred hhHHHHHHHHHHHHH-hhHHHHHHHHHhh-hHhHhhhcccc
Q 001696 924 HDIVRIRYDRLRSVA-GRIQTVVGDIATQ-GERFQSLLSWR 962 (1026)
Q Consensus 924 ~~~~~~r~~~l~~~~-~~vQ~~l~~~a~~-le~~~~l~~w~ 962 (1026)
.+++.+|+-+|+++. -.+.+.+...++. ...+++++++.
T Consensus 48 ~ETl~ERi~ALkDm~Pp~~R~~i~~~~s~t~s~~ks~~sfs 88 (145)
T TIGR00986 48 EETFTDRIYALKDIVPPTTRGWIYHKYSTTTNFVKSTLSFA 88 (145)
T ss_pred cCcHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 588999999999998 4455555554443 34445555543
No 334
>KOG4269 consensus Rac GTPase-activating protein BCR/ABR [Signal transduction mechanisms]
Probab=24.63 E-value=40 Score=41.43 Aligned_cols=103 Identities=27% Similarity=0.353 Sum_probs=64.9
Q ss_pred CceEEEEEEEEecCCCCCccCCCCCCcCcEEEEEE---C--CEEEEeeeecCCCCceeecEEEEEeeCCCCEEEEEEEeC
Q 001696 610 PVGILEVGILGAQGLLPMKMKDGRGSTDAYCIAKY---G--QKWVRTRTILDTFNPKWNEQYTWEVYDPCTVITLGVFDN 684 (1026)
Q Consensus 610 ~~g~L~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~---g--~~~~~T~~~~~t~~P~wne~~~~~v~~~~~~l~i~v~d~ 684 (1026)
..|.+.+.+++|.+|.. ...-||.... | ..+.+|+++.+|..|.||+.++.++..... ..|..++.
T Consensus 757 ~ygflh~~vhsat~lkq--------s~~lY~Td~v~e~~~~~s~~st~~iadT~~~~~npe~hv~~~~sqS-~r~~~~ek 827 (1112)
T KOG4269|consen 757 LYGFLHVIVHSATGLKQ--------SRNLYCTDEVDEFGYFVSKASTRVIADTAEPQWNPEKHVPVIESQS-SRLEKTEK 827 (1112)
T ss_pred cccceeeeecccccccc--------ccceeeehhhhhhccccccccceeeecccCCCCChhcccchhhccc-cchhhhcc
Confidence 34889999999999875 4567888754 3 556999999999999999999988865322 33555554
Q ss_pred CCCCCCCccCCC-CCCCCCeeEEEEEEcccccCCceEeeeEe
Q 001696 685 CHLGGGEKQNGS-SAVRDSRIGKVRIRLSTLEAHRIYTHSYP 725 (1026)
Q Consensus 685 ~~~~~~~~~~~~-~~~~~~~lG~~~i~l~~l~~~~~~~~~~~ 725 (1026)
+.-- .|-... ....+...|+.++.+.--.... ..||.
T Consensus 828 ~~~~--~k~~~~~~~~~~~~~~~~~~~l~~~~~~d--~d~~t 865 (1112)
T KOG4269|consen 828 STPV--EKLIDSHSQNSQNEEKRSRMKLDPQPHHD--ADWYT 865 (1112)
T ss_pred cchH--HHhhhccchhhcccccccccccCcccccc--ccCcc
Confidence 4210 000000 0124556677666665543332 34544
No 335
>PF14186 Aida_C2: Cytoskeletal adhesion; PDB: 2QZQ_A 2QZ5_A.
Probab=23.67 E-value=3.8e+02 Score=26.02 Aligned_cols=91 Identities=14% Similarity=-0.024 Sum_probs=48.0
Q ss_pred eEEEEEEEEecCCCCCccCCCCCCcCcEEEEEE---CC----EEEEeeeecCC-CCc-eeecEEEEEee--C--CCCEEE
Q 001696 612 GILEVGILGAQGLLPMKMKDGRGSTDAYCIAKY---GQ----KWVRTRTILDT-FNP-KWNEQYTWEVY--D--PCTVIT 678 (1026)
Q Consensus 612 g~L~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~---g~----~~~~T~~~~~t-~~P-~wne~~~~~v~--~--~~~~l~ 678 (1026)
-.|.|.|-+.. |. |...-.|||+.|.+ .| ..+.|.+.... .|- .||...++... . +...|.
T Consensus 13 t~l~v~Iekig-lk-----da~~~~~P~~tVSV~D~~G~~ve~~QdTpv~~~~~~~yv~f~~~v~lqtple~lp~Gaai~ 86 (147)
T PF14186_consen 13 TYLSVFIEKIG-LK-----DASQYIDPYFTVSVKDGNGKDVEPPQDTPVGSRREDNYVHFNNTVHLQTPLEKLPKGAAIF 86 (147)
T ss_dssp -EEEEEEEEEE--T-----TGGG-EEEEEEEEEE-TTS-BSS--EE--S-SEEETTEEEEEEEEE-SS-GGGS-TT-EEE
T ss_pred ceEEEEEEEEE-EC-----ChHHccCCeEEEEEECCCCCCccccccCCCcccccCCEEEEcccEEEcCCHHHCCCceEEE
Confidence 35777775553 65 44456899999988 12 23667776332 232 34433333221 1 245699
Q ss_pred EEEEeCCCCCCCCccCCCCCCCCCeeEEEEEEcccccCCc
Q 001696 679 LGVFDNCHLGGGEKQNGSSAVRDSRIGKVRIRLSTLEAHR 718 (1026)
Q Consensus 679 i~v~d~~~~~~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~ 718 (1026)
+++.++.... .+-...+.+.+.+.+|..|.
T Consensus 87 fE~kH~K~kk----------~k~S~kcw~fme~dei~~g~ 116 (147)
T PF14186_consen 87 FEFKHYKPKK----------KKTSTKCWAFMELDEIKPGP 116 (147)
T ss_dssp EEEEEEETTT----------TCEEEEEEEEEEGGG--SEE
T ss_pred EEEEeeeccc----------eeeeeeEEEEEEhhhccCCc
Confidence 9999976421 23445789999999998873
No 336
>PF14924 DUF4497: Protein of unknown function (DUF4497)
Probab=23.59 E-value=1.9e+02 Score=26.57 Aligned_cols=64 Identities=20% Similarity=0.200 Sum_probs=41.8
Q ss_pred CCEEEEEEEeCCCCCCCCccCCCCCCCCCeeEEEEEEccccc--------------CCceEeeeEeeeecCCCCCccCcE
Q 001696 674 CTVITLGVFDNCHLGGGEKQNGSSAVRDSRIGKVRIRLSTLE--------------AHRIYTHSYPLLVLHPHGVKKMGE 739 (1026)
Q Consensus 674 ~~~l~i~v~d~~~~~~~~~~~~~~~~~~~~lG~~~i~l~~l~--------------~~~~~~~~~~L~~~~~~g~~~~G~ 739 (1026)
...|.+.+++...- . .......||.+.|++.+.. ........|+|.+.. |. ..|+
T Consensus 28 ~~pl~i~~~~~~~~---~-----~~~~~~liG~~~i~l~~~~~~i~~~~~~~~~~p~s~~~k~~f~L~~~~--~~-~~G~ 96 (112)
T PF14924_consen 28 SFPLYIVVKKVPPG---F-----PTPPPMLIGSCPISLAEAFNRILKDSAECNGQPSSKTIKGTFPLFDEN--GN-PVGE 96 (112)
T ss_pred CCceEEEEEecCCC---C-----CCCccceeeEEEecHHHHHHHHHHHHHhhccCCCchhhcceeEeecCC--Cc-eeee
Confidence 34678877764320 0 0125678999999999863 112457789998533 33 4699
Q ss_pred EEEEEEEee
Q 001696 740 LQLAIRFTI 748 (1026)
Q Consensus 740 i~l~~~f~~ 748 (1026)
|.+.+|.++
T Consensus 97 I~l~iRLsc 105 (112)
T PF14924_consen 97 ISLYIRLSC 105 (112)
T ss_pred EEEEEEEec
Confidence 999988764
No 337
>PF08174 Anillin: Cell division protein anillin; InterPro: IPR012966 This is a conserved domain in the anillin family of proteins, which are involved in cell division []. In Schizosaccharomyces pombe (Fission yeast, anillin (Mid2) is involved in septin ring organisation and cell separation [, ]. The domain is found adjacent to a 'pleckstrin homology' (PH) domain. The PH domain occurs in a wide range of proteins involved in intracellular signalling or as constituents of the cytoskeleton (IPR001849 from INTERPRO).
Probab=23.20 E-value=3.7e+02 Score=25.62 Aligned_cols=48 Identities=21% Similarity=0.544 Sum_probs=35.4
Q ss_pred CcEEEEEEC-CEEEEeeeec--C----CCCceeecEEEEEeeCCCCEEEEEEEeC
Q 001696 637 DAYCIAKYG-QKWVRTRTIL--D----TFNPKWNEQYTWEVYDPCTVITLGVFDN 684 (1026)
Q Consensus 637 dpyv~v~~g-~~~~~T~~~~--~----t~~P~wne~~~~~v~~~~~~l~i~v~d~ 684 (1026)
--||.++++ ..|..|.++. + ...-.|++.|.|....+.-.|+|+||+.
T Consensus 35 ~~~~l~k~~~~~~~~t~~~~~~dgs~~~~~i~f~~~~~~~~~~~dF~v~vevy~~ 89 (140)
T PF08174_consen 35 AFFCLLKYGPEEWDATFLVVARDGSFARTDICFPDTFEFSNVGPDFEVTVEVYNE 89 (140)
T ss_pred EEEEEEecCCceEEEEeeEEccCcccccceEecCceeeecccCCCcEEEEEEEEE
Confidence 345666778 7787777442 2 2346788889998888888899999997
No 338
>cd05137 RasGAP_CLA2_BUD2 CLA2/BUD2 functions as a GTPase-activating protein (GAP) for BUD1/RSR1 and is necessary for proper bud-site selection in yeast. BUD2 has sequence similarity to the catalytic domain of RasGAPs, and stimulates the hydrolysis of BUD1-GTP to BUD1-GDP. Elimination of Bud2p activity by mutation causes a random budding pattern with no growth defect. Overproduction of Bud2p also alters the budding pattern.
Probab=22.41 E-value=76 Score=36.40 Aligned_cols=16 Identities=25% Similarity=0.324 Sum_probs=9.4
Q ss_pred hhHHHHHHHHHHHHhH
Q 001696 819 RSKANFFRVMSLLSGM 834 (1026)
Q Consensus 819 ~~~~n~~Rl~~~~~~~ 834 (1026)
.+..|+..|.....-+
T Consensus 193 ~l~~n~~~L~~~~~~~ 208 (395)
T cd05137 193 IIEHNWERLISLTEEI 208 (395)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4556777666665433
No 339
>KOG4027 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.33 E-value=3.2e+02 Score=26.61 Aligned_cols=73 Identities=10% Similarity=0.029 Sum_probs=46.2
Q ss_pred CCCCCCEEEEEe--C-------C-c---eeeeccCCCCCCc-ccceeEEEeccCCCCCccceEEEEEeeCCCCCCCCCcc
Q 001696 19 EGSASPFAEVDF--L-------N-Q---LSKTKTIPKNLNP-VWNQKLLFDFDQTKSHNHLRIEVSIYHHERRPIPGRHF 84 (1026)
Q Consensus 19 ~g~~dpyv~v~~--~-------~-~---~~~T~~~~~t~nP-~Wne~f~f~~~~~~~~~~~~L~~~V~d~d~~~~~~d~~ 84 (1026)
.-.+|-||+.+. + + + .+.|.-.+.-.|| +||--++..++......=..|.+.||..|. .++|..
T Consensus 23 Pe~~dv~~ky~~Vag~DW~~~~Gpqegvsq~s~~~r~~~~~iv~n~Pievt~KstsPygWPqivl~vfg~d~--~G~d~v 100 (187)
T KOG4027|consen 23 PEESDVCVKYSTVAGGDWKIINGPQEGVSQSSFSFRGADNQIVINLPIEVTLKSTSPYGWPQIVLNVFGKDH--SGKDCV 100 (187)
T ss_pred CCCCceEEEEEEEecCCceeccCcccchhhheeccccCCCceEEecceEEEeccCCCCCCceEEEEEecCCc--CCccee
Confidence 346788998877 1 1 1 2222222333444 678777766666655555689999999443 468889
Q ss_pred ceeEEecCc
Q 001696 85 LGRVRIPCS 93 (1026)
Q Consensus 85 lG~~~i~l~ 93 (1026)
.|...+++-
T Consensus 101 ~GYg~~hiP 109 (187)
T KOG4027|consen 101 TGYGMLHIP 109 (187)
T ss_pred eeeeeEecC
Confidence 998888743
No 340
>PF13779 DUF4175: Domain of unknown function (DUF4175)
Probab=20.06 E-value=3.7e+02 Score=34.11 Aligned_cols=50 Identities=24% Similarity=0.324 Sum_probs=30.8
Q ss_pred ccccCchhHHHHHHHHHHHHHHHhhhhhHHHHHHH-hhh------------hhcCCCCCCCCCCc
Q 001696 959 LSWRDPRATALFILFSLCAAMVLYTTPFKVVALLA-GLY------------YLRHPRFRSKLPSV 1010 (1026)
Q Consensus 959 ~~w~~p~~t~~~~~~l~~~~i~l~~iP~r~i~l~~-g~~------------~~r~P~~~~~~p~~ 1010 (1026)
+.-+||++-..++++++++++++- -.+|+--.+. +.. ++.+|.|+.. |+.
T Consensus 122 ~a~~Dp~ALR~~a~l~lv~a~~~~-~~~R~~~~~~~~~~~~~~~~~~~idaWItPPaYTG~-pPi 184 (820)
T PF13779_consen 122 LARRDPFALRALALLLLVAALAFG-GSGRVGRAFDPFPGGAAAAPGPRIDAWITPPAYTGR-PPI 184 (820)
T ss_pred ccccccHHHHHHHHHHHHHHHHhc-ccchhhhhhhccCCCccCCCCCeEEEEecCCCcCCC-CCE
Confidence 345899999887777777765544 3466532221 111 4678999875 443
Done!