Query 001696
Match_columns 1026
No_of_seqs 452 out of 4325
Neff 8.8
Searched_HMMs 29240
Date Tue Mar 26 15:45:50 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001696.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_995-998//hhsearch_pdb/001696hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2r83_A Synaptotagmin-1; C2A-C2 1.0 1 1 267.1 30.1 247 271-558 6-274 (284)
2 1dqv_A Synaptotagmin III; beta 1.0 1 1 265.5 21.8 248 271-558 7-277 (296)
3 2r83_A Synaptotagmin-1; C2A-C2 1.0 1 1 262.0 30.9 244 400-728 4-272 (284)
4 1dqv_A Synaptotagmin III; beta 1.0 1 1 261.1 19.2 244 399-727 4-274 (296)
5 2ep6_A MCTP2 protein; beta san 1.0 1 1 156.3 13.0 124 608-748 9-132 (133)
6 2fk9_A Protein kinase C, ETA t 1.0 1 1 153.3 13.6 119 609-747 26-156 (157)
7 1wfj_A Putative elicitor-respo 1.0 1 1 152.4 13.4 123 609-749 7-131 (136)
8 3m7f_B E3 ubiquitin-protein li 1.0 1 1 151.5 16.3 123 611-748 7-141 (176)
9 2dmh_A Myoferlin; beta-sandwic 1.0 1 1 151.5 16.3 124 611-749 6-134 (140)
10 3b7y_A E3 ubiquitin-protein li 1.0 1 1 151.1 14.9 124 609-747 17-152 (153)
No 1
>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2
Probab=1.00 E-value=1 Score=267.13 Aligned_cols=247 Identities=25% Similarity=0.376 Sum_probs=192.9
Q ss_pred CC-EEEEEECCCCCEEEEEEEEEEEECCCCCCCCCCCCCEEEEEECC---EEEEEEEECCCCCCEEEEEEEEEECC--CC
Q ss_conf 45-05764245562129999999841699999999999699999999---55576522499998396899998057--89
Q 001696 271 GE-RFTSTYDLVEQMSYLYVRVVKAKDLPPSSITGSCDPYVEVKMGN---YKGRTKHFEKRMNPEWNQVFAFSKER--IQ 344 (1026)
Q Consensus 271 ~~-~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~---~~~kT~v~~~t~nP~wne~f~f~v~~--~~ 344 (1026)
|+ ++++.|+. ..+.|.|+|++|+||+.++..|.+||||++++++ ++++|+++++++||.|||+|.|.+.. ..
T Consensus 6 G~l~~~l~y~~--~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~wne~f~f~v~~~~~~ 83 (284)
T 2r83_A 6 GKLQYSLDYDF--QNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELA 83 (284)
T ss_dssp CEEEEEEEEET--TTTEEEEEEEEEECCCCCSSSSSCCEEEEEEEETCTTSCEECCCCCSCSSCEEEEEEEECCCGGGCT
T ss_pred EEEEEEEEEEC--CCCEEEEEEEEEECCCCCCCCCCCCEEEEEEEECCCCCEEECCCCCCCCCCEECCEEEEEECHHHHC
T ss_conf 48999999978--8999999999840999877899979679999981998547688515999982573699984668837
Q ss_pred CCEEEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCEEEEEECCCCC-CCCCCEEEEEEEECCCCCHHHHHCCC
Q ss_conf 87399999968989998544999998542589899999998989992128999-72134599999953567523331024
Q 001696 345 SSMLEVFLKDKEMVGRDDYLGRVAFDLNEVPTRVPPDSPLAPQWYRLEDRRGE-GKVRGQTMLAIWMGTQADEAFAEAWH 423 (1026)
Q Consensus 345 ~~~L~i~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~-~~~~G~i~l~~~~~~~~~~~~~~~~~ 423 (1026)
...|.|+|||++.+++|++||++.+++.++...... ..|++|....+. ....|+|.+.+.+.+.
T Consensus 84 ~~~l~~~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~-----~~w~~L~~~~~~~~~~~G~i~l~l~~~p~---------- 148 (284)
T 2r83_A 84 GKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVT-----EEWRDLQSAEKEEQEKLGDICFSLRYVPT---------- 148 (284)
T ss_dssp TCEEEEEEEECCSSSCCCEEEEEEEEGGGCCCSSCE-----EEEEECBCCSSCCCCCCCEEEEEEEEETT----------
T ss_pred CCEEEEEEEECCCCCCCCEEEEEEECCHHCCCCCCC-----EEEEEEECCCCCCCCCCCCEEEEEEECCC----------
T ss_conf 578999999889887774658999735013567763-----03898303355665666638999996076----------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEECCCCCCCCCCCCEEEEEEC---C--EEEEEEEECCCCCCCCCCC
Q ss_conf 5686655877311122222489317999999996846999999999729999999---9--5999320019999982163
Q 001696 424 SDASSVYGEGVFNIRSKVYVSPKLWYLRVNVIEAQDIVPNDRNRLPEGFVKVQVG---N--QVLKTKICPTPTTNPLWNE 498 (1026)
Q Consensus 424 ~~~~~~~~~~~~~~r~~~~~~~~~~~l~V~I~~a~~L~~~d~~~~~DpyV~v~lg---~--~~~kT~~~~~~t~nP~wne 498 (1026)
.+.|.|.|++|++|+.++.++.+||||+++++ . ..++|+++ ++++||.|||
T Consensus 149 -----------------------~~~l~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~v~-~~t~nP~wne 204 (284)
T 2r83_A 149 -----------------------AGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIK-KNTLNPYYNE 204 (284)
T ss_dssp -----------------------TTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCC-CSCSSCEEEE
T ss_pred -----------------------CCCEEEEEEEEECCCCCCCCCCCCEEEEEEEEECCCEEEEECCCEE-CCCCCCEECE
T ss_conf -----------------------7954999999678887678999684899999869937313315133-1899977740
Q ss_pred EEEEEEECC--CCCEEEEEEEECCCCCCCCEEEEEEEECCCCCCC--------CCCCCCCCEEEECCCCC
Q ss_conf 569975279--7673999999823899980559999807432232--------47887644459832278
Q 001696 499 DLVFVAAEP--FEEQLFLTVEDRVHASKDEVLGKISLPLHIFEKR--------LDHRPVHSRWFNLEKFG 558 (1026)
Q Consensus 499 ~f~f~v~~~--~~~~L~i~V~d~d~~~~d~~lG~~~i~l~~l~~~--------~~~~~~~~~w~~L~~~~ 558 (1026)
.|.|.+... ....|.|+|||++.+++|++||++.|++..+... ...+....+|++|....
T Consensus 205 ~f~f~v~~~~l~~~~l~i~V~d~d~~~~~~~iG~~~i~l~~~~~~~~~w~~~~~~~~~~~~~W~~L~~~~ 274 (284)
T 2r83_A 205 SFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQVEE 274 (284)
T ss_dssp EEEEECCTTTGGGEEEEEEEEECCSSSCCCEEEEEEEETTCCHHHHHHHHHHHHSTTSCEEEEEECBCHH
T ss_pred EEEEECCHHHHCCEEEEEEEEECCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHCCCCCHHEEEECCCCC
T ss_conf 3898489799085389999996898888857889998988887278899999878998142652268953
No 2
>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A
Probab=1.00 E-value=1 Score=265.51 Aligned_cols=248 Identities=27% Similarity=0.380 Sum_probs=195.6
Q ss_pred CC-EEEEEECCCCCEEEEEEEEEEEECCCCCCCCCCCCCEEEEEE---CCEEEEEEEECCCCCCEEEEEEEEEEC--CCC
Q ss_conf 45-057642455621299999998416999999999996999999---995557652249999839689999805--789
Q 001696 271 GE-RFTSTYDLVEQMSYLYVRVVKAKDLPPSSITGSCDPYVEVKM---GNYKGRTKHFEKRMNPEWNQVFAFSKE--RIQ 344 (1026)
Q Consensus 271 ~~-~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~---~~~~~kT~v~~~t~nP~wne~f~f~v~--~~~ 344 (1026)
|+ ++++.|+. ..+.|.|+|++|+||+.++..|.+||||++++ +.++++|+++++++||.|||+|.|.+. ++.
T Consensus 7 G~l~~~l~y~~--~~~~L~v~v~~a~~L~~~d~~g~~dPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~ 84 (296)
T 1dqv_A 7 GRISFALRYLY--GSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLAELA 84 (296)
T ss_dssp CEEEEEEECCS--SSCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCEECCCCCSCSSCEEEEEEEEECCGGGGS
T ss_pred EEEEEEEEEEC--CCCEEEEEEEEEECCCCCCCCCCCCEEEEEEEECCCCEEEECCCCCCCCCCCEEEEEEEEECHHHHC
T ss_conf 58999999928--8998999999957999867899808399999985897147687247999973820799993689926
Q ss_pred CCEEEEEEEECCCCCCCCEEEEEEEE-CCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCEEEEEEEECCCCCHHHHHCCC
Q ss_conf 87399999968989998544999998-54258989999999898999212899972134599999953567523331024
Q 001696 345 SSMLEVFLKDKEMVGRDDYLGRVAFD-LNEVPTRVPPDSPLAPQWYRLEDRRGEGKVRGQTMLAIWMGTQADEAFAEAWH 423 (1026)
Q Consensus 345 ~~~L~i~V~d~~~~~~d~~lG~~~i~-l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~~~~~~~~~~~~ 423 (1026)
...|.|+|||++.+++|++||++.++ +.++..... ....|+.|....+.....|+|.+.+.+.+.
T Consensus 85 ~~~L~~~V~d~d~~~~~~~iG~~~i~~l~~~~~~~~----~~~~w~~L~~~~~~~~~~G~i~vsl~y~~~---------- 150 (296)
T 1dqv_A 85 QRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPP----DRPLWRDILEGGSEKADLGELNFSLCYLPT---------- 150 (296)
T ss_dssp SCCCEEEEEECCSSSCCCEEEEEECCCTTGGGSSCS----SCCCCEECBCCSSCCSCCCEEEEEEEEETT----------
T ss_pred CCEEEEEEEECCCCCCCCEEEEEEECCCCCCCCCCC----CCEEEECCCCCCCCCCCCCEEEEEEEECCC----------
T ss_conf 788999999758988774679999253102133776----504662023455456624569999996566----------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEECCCCCCCCCCCCEEEEEEC--C---EEEEEEEECCCCCCCCCCC
Q ss_conf 5686655877311122222489317999999996846999999999729999999--9---5999320019999982163
Q 001696 424 SDASSVYGEGVFNIRSKVYVSPKLWYLRVNVIEAQDIVPNDRNRLPEGFVKVQVG--N---QVLKTKICPTPTTNPLWNE 498 (1026)
Q Consensus 424 ~~~~~~~~~~~~~~r~~~~~~~~~~~l~V~I~~a~~L~~~d~~~~~DpyV~v~lg--~---~~~kT~~~~~~t~nP~wne 498 (1026)
.+.|.|+|++|++|+.+|.+|.+||||+++++ + ++++|+++ +++.||.|||
T Consensus 151 -----------------------~~~l~v~v~~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~-~~t~nP~wne 206 (296)
T 1dqv_A 151 -----------------------AGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIK-KNTLNPTYNE 206 (296)
T ss_dssp -----------------------TTEEEEEEEEEESCCCCSSSSCCCEEEEECCCTTCCTTSCEECCCC-CSCSSCEEEE
T ss_pred -----------------------CCEEEEEEEEEECCCCCCCCCCCCCEEEEEEEECCCCCCCEECCEE-CCCCCCEECC
T ss_conf -----------------------6525799998524776677778884799999739927223225144-3899986775
Q ss_pred EEEEEEECCC--CCEEEEEEEECCCCCCCCEEEEEEEECCCCCCC----C-----CCCCCCCEEEECCCCC
Q ss_conf 5699752797--673999999823899980559999807432232----4-----7887644459832278
Q 001696 499 DLVFVAAEPF--EEQLFLTVEDRVHASKDEVLGKISLPLHIFEKR----L-----DHRPVHSRWFNLEKFG 558 (1026)
Q Consensus 499 ~f~f~v~~~~--~~~L~i~V~d~d~~~~d~~lG~~~i~l~~l~~~----~-----~~~~~~~~w~~L~~~~ 558 (1026)
.|.|.+.... ...|.|+|||++..++|++||++.|++..+... + ..+....+|++|....
T Consensus 207 ~f~f~v~~~~l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~~~~~~~~~W~~~~~~~~~~~~~w~~L~~~~ 277 (296)
T 1dqv_A 207 ALVFDVAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADPHGREHWAEMLANPRKPVEHWHQLVEEK 277 (296)
T ss_dssp CCCCCCCSGGGGSCCCCCEEEECCSSSCCEEEEECCCSSCTTCHHHHHHHHTSSSSSSSCSCSCCCCBBCC
T ss_pred EEEEECCHHHCCCCEEEEEEEECCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCC
T ss_conf 49997587880574799999958988887367899987733786067899999858998203751454823
No 3
>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2
Probab=1.00 E-value=1 Score=261.96 Aligned_cols=244 Identities=25% Similarity=0.329 Sum_probs=199.5
Q ss_pred CCCEEEEEEEECCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEECCCCCCCCCCCCEEEEEEC-
Q ss_conf 1345999999535675233310245686655877311122222489317999999996846999999999729999999-
Q 001696 400 VRGQTMLAIWMGTQADEAFAEAWHSDASSVYGEGVFNIRSKVYVSPKLWYLRVNVIEAQDIVPNDRNRLPEGFVKVQVG- 478 (1026)
Q Consensus 400 ~~G~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~l~V~I~~a~~L~~~d~~~~~DpyV~v~lg- 478 (1026)
..|+|.+++.|... .+.|+|+|++|++|+.+|.++.+||||+++++
T Consensus 4 ~~G~l~~~l~y~~~---------------------------------~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~ 50 (284)
T 2r83_A 4 KLGKLQYSLDYDFQ---------------------------------NNQLLVGIIQAAELPALDMGGTSDPYVKVFLLP 50 (284)
T ss_dssp CCCEEEEEEEEETT---------------------------------TTEEEEEEEEEECCCCCSSSSSCCEEEEEEEET
T ss_pred CEEEEEEEEEEECC---------------------------------CCEEEEEEEEEECCCCCCCCCCCCEEEEEEEEC
T ss_conf 24489999999788---------------------------------999999999840999877899979679999981
Q ss_pred --CEEEEEEEECCCCCCCCCCCEEEEEEECC--CCCEEEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCCCCEEEEC
Q ss_conf --95999320019999982163569975279--76739999998238999805599998074322324788764445983
Q 001696 479 --NQVLKTKICPTPTTNPLWNEDLVFVAAEP--FEEQLFLTVEDRVHASKDEVLGKISLPLHIFEKRLDHRPVHSRWFNL 554 (1026)
Q Consensus 479 --~~~~kT~~~~~~t~nP~wne~f~f~v~~~--~~~~L~i~V~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L 554 (1026)
++.++|+++ ++++||.|||.|.|.+... ....|.|+|||++..++|++||++.+++.++... .....|++|
T Consensus 51 ~~~~~~~T~~~-~~~~nP~wne~f~f~v~~~~~~~~~l~~~V~d~d~~~~~~~lG~~~i~l~~l~~~----~~~~~w~~L 125 (284)
T 2r83_A 51 DKKKKFETKVH-RKTLNPVFNEQFTFKVPYSELAGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFG----HVTEEWRDL 125 (284)
T ss_dssp CTTSCEECCCC-CSCSSCEEEEEEEECCCGGGCTTCEEEEEEEECCSSSCCCEEEEEEEEGGGCCCS----SCEEEEEEC
T ss_pred CCCCEEECCCC-CCCCCCEECCEEEEEECHHHHCCCEEEEEEEECCCCCCCCEEEEEEECCHHCCCC----CCCEEEEEE
T ss_conf 99854768851-5999982573699984668837578999999889887774658999735013567----763038983
Q ss_pred CCCCCCCHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCC
Q ss_conf 22788721221100243230399999832873345885344688522233357999608999999703897875589999
Q 001696 555 EKFGFGAIEADRRKELKFSSRVHLRVCLEGGYHVLDESTMYISDQRPTAKQLWKPPVGILEVGILGAQGLLPMKMKDGRG 634 (1026)
Q Consensus 555 ~~~~~~~~~~~~~~~~~~~g~v~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~g~l~v~v~~a~~L~~~~~~~~~g 634 (1026)
...... .....|.+++.+.+. +..+.|.|.|++|++|+.+ +..|
T Consensus 126 ~~~~~~--------~~~~~G~i~l~l~~~-------------------------p~~~~l~v~v~~a~~L~~~---d~~~ 169 (284)
T 2r83_A 126 QSAEKE--------EQEKLGDICFSLRYV-------------------------PTAGKLTVVILEAKNLKKM---DVGG 169 (284)
T ss_dssp BCCSSC--------CCCCCCEEEEEEEEE-------------------------TTTTEEEEEEEEEESCCCC---STTS
T ss_pred ECCCCC--------CCCCCCCEEEEEEEC-------------------------CCCCCEEEEEEEEECCCCC---CCCC
T ss_conf 033556--------656666389999960-------------------------7679549999996788876---7899
Q ss_pred CCCCEEEEEEC--C---EEEEEEEECCCCCCEEECEEEEEEECC---CCEEEEEEEECCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 76809999989--9---999832213889962300889995279---977999999599789997568999989970099
Q 001696 635 STDAYCIAKYG--Q---KWVRTRTILDTFNPKWNEQYTWEVYDP---CTVITLGVFDNCHLGGGEKQNGSSAVRDSRIGK 706 (1026)
Q Consensus 635 ~~dpyv~v~~g--~---~~~~T~~~~~t~~P~wne~~~~~v~~~---~~~l~i~v~d~~~~~~~~~~~~~~~~~d~~iG~ 706 (1026)
.+||||++.+. + ...+|+++++++||.|||.|.|.+..+ ...|.|+|||++.++ ++++||.
T Consensus 170 ~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~d~~~-----------~~~~iG~ 238 (284)
T 2r83_A 170 LSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIG-----------KNDAIGK 238 (284)
T ss_dssp CCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCTTTGGGEEEEEEEEECCSSS-----------CCCEEEE
T ss_pred CCCEEEEEEEEECCCEEEEECCCEECCCCCCEECEEEEEECCHHHHCCEEEEEEEEECCCCC-----------CCCEEEE
T ss_conf 96848999998699373133151331899977740389848979908538999999689888-----------8857889
Q ss_pred EEEECCCC------------CCCCEEEEEEEEEE
Q ss_conf 99976633------------58956865595355
Q 001696 707 VRIRLSTL------------EAHRIYTHSYPLLV 728 (1026)
Q Consensus 707 ~~i~L~~l------------~~~~~~~~~~~L~~ 728 (1026)
+.|+|+.+ ..+....+||+|..
T Consensus 239 ~~i~l~~~~~~~~~w~~~~~~~~~~~~~W~~L~~ 272 (284)
T 2r83_A 239 VFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQV 272 (284)
T ss_dssp EEEETTCCHHHHHHHHHHHHSTTSCEEEEEECBC
T ss_pred EEECCCCCCCHHHHHHHHHHCCCCCHHEEEECCC
T ss_conf 9989888872788999998789981426522689
No 4
>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A
Probab=1.00 E-value=1 Score=261.15 Aligned_cols=244 Identities=24% Similarity=0.348 Sum_probs=195.9
Q ss_pred CCCCEEEEEEEECCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEECCCCCCCCCCCCEEEEEE-
Q ss_conf 2134599999953567523331024568665587731112222248931799999999684699999999972999999-
Q 001696 399 KVRGQTMLAIWMGTQADEAFAEAWHSDASSVYGEGVFNIRSKVYVSPKLWYLRVNVIEAQDIVPNDRNRLPEGFVKVQV- 477 (1026)
Q Consensus 399 ~~~G~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~l~V~I~~a~~L~~~d~~~~~DpyV~v~l- 477 (1026)
+..|+|.+++.|.. ..+.|+|+|++|++|+.+|.++.+||||++++
T Consensus 4 ~~~G~l~~~l~y~~---------------------------------~~~~L~v~v~~a~~L~~~d~~g~~dPyv~v~l~ 50 (296)
T 1dqv_A 4 APCGRISFALRYLY---------------------------------GSDQLVVRILQALDLPAKDSNGFSDPYVKIYLL 50 (296)
T ss_dssp CSSCEEEEEEECCS---------------------------------SSCEEEEEEEEEECCCCCSTTSCCCEEEEEECT
T ss_pred CEEEEEEEEEEEEC---------------------------------CCCEEEEEEEEEECCCCCCCCCCCCEEEEEEEE
T ss_conf 70458999999928---------------------------------899899999995799986789980839999998
Q ss_pred --CCEEEEEEEECCCCCCCCCCCEEEEEEECC--CCCEEEEEEEECCCCCCCCEEEEEEEE-CCCCCCCCCCCCCCCEEE
Q ss_conf --995999320019999982163569975279--767399999982389998055999980-743223247887644459
Q 001696 478 --GNQVLKTKICPTPTTNPLWNEDLVFVAAEP--FEEQLFLTVEDRVHASKDEVLGKISLP-LHIFEKRLDHRPVHSRWF 552 (1026)
Q Consensus 478 --g~~~~kT~~~~~~t~nP~wne~f~f~v~~~--~~~~L~i~V~d~d~~~~d~~lG~~~i~-l~~l~~~~~~~~~~~~w~ 552 (1026)
+++.++|+++ ++++||.|||.|.|.+... ....|.|+|||+|.+++|++||++.++ +.++... ......|+
T Consensus 51 ~~~~~~~kT~v~-~~t~nP~wne~f~f~v~~~~l~~~~L~~~V~d~d~~~~~~~iG~~~i~~l~~~~~~---~~~~~~w~ 126 (296)
T 1dqv_A 51 PDRKKKFQTKVH-RKTLNPIFNETFQFSVPLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQ---PPDRPLWR 126 (296)
T ss_dssp TSTTSCEECCCC-CSCSSCEEEEEEEEECCGGGGSSCCCEEEEEECCSSSCCCEEEEEECCCTTGGGSS---CSSCCCCE
T ss_pred CCCCEEEECCCC-CCCCCCCEEEEEEEEECHHHHCCCEEEEEEEECCCCCCCCEEEEEEECCCCCCCCC---CCCCEEEE
T ss_conf 589714768724-79999738207999936899267889999997589887746799992531021337---76504662
Q ss_pred ECCCCCCCCHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCC
Q ss_conf 83227887212211002432303999998328733458853446885222333579996089999997038978755899
Q 001696 553 NLEKFGFGAIEADRRKELKFSSRVHLRVCLEGGYHVLDESTMYISDQRPTAKQLWKPPVGILEVGILGAQGLLPMKMKDG 632 (1026)
Q Consensus 553 ~L~~~~~~~~~~~~~~~~~~~g~v~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~g~l~v~v~~a~~L~~~~~~~~ 632 (1026)
.|..... .....|.+++.+.+.. ..|.|.|.|++|++|+++ +.
T Consensus 127 ~L~~~~~---------~~~~~G~i~vsl~y~~-------------------------~~~~l~v~v~~a~~L~~~---d~ 169 (296)
T 1dqv_A 127 DILEGGS---------EKADLGELNFSLCYLP-------------------------TAGLLTVTIIKASNLKAM---DL 169 (296)
T ss_dssp ECBCCSS---------CCSCCCEEEEEEEEET-------------------------TTTEEEEEEEEEESCCCC---SS
T ss_pred CCCCCCC---------CCCCCCEEEEEEEECC-------------------------CCCEEEEEEEEEECCCCC---CC
T ss_conf 0234554---------5662456999999656-------------------------665257999985247766---77
Q ss_pred CCCCCCEEEEEEC--C---EEEEEEEECCCCCCEEECEEEEEEECC---CCEEEEEEEECCCCCCCCCCCCCCCCCCCEE
Q ss_conf 9976809999989--9---999832213889962300889995279---9779999995997899975689999899700
Q 001696 633 RGSTDAYCIAKYG--Q---KWVRTRTILDTFNPKWNEQYTWEVYDP---CTVITLGVFDNCHLGGGEKQNGSSAVRDSRI 704 (1026)
Q Consensus 633 ~g~~dpyv~v~~g--~---~~~~T~~~~~t~~P~wne~~~~~v~~~---~~~l~i~v~d~~~~~~~~~~~~~~~~~d~~i 704 (1026)
.|.+||||++.++ + .+++|+++++++||.|||.|.|.+... ...|.|+|||++.++ ++++|
T Consensus 170 ~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~~~-----------~~~~i 238 (296)
T 1dqv_A 170 TGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAVVDYDCIG-----------HNEVI 238 (296)
T ss_dssp SSCCCEEEEECCCTTCCTTSCEECCCCCSCSSCEEEECCCCCCCSGGGGSCCCCCEEEECCSSS-----------CCEEE
T ss_pred CCCCCCEEEEEEEECCCCCCCEECCEECCCCCCEECCEEEEECCHHHCCCCEEEEEEEECCCCC-----------CCCEE
T ss_conf 7788847999997399272232251443899986775499975878805747999999589888-----------87367
Q ss_pred EEEEEECCCCCC-------------CCEEEEEEEEE
Q ss_conf 999997663358-------------95686559535
Q 001696 705 GKVRIRLSTLEA-------------HRIYTHSYPLL 727 (1026)
Q Consensus 705 G~~~i~L~~l~~-------------~~~~~~~~~L~ 727 (1026)
|.+.|++..+.. +....+|++|.
T Consensus 239 G~~~i~l~~~~~~~~~~W~~~~~~~~~~~~~w~~L~ 274 (296)
T 1dqv_A 239 GVCRVGPEAADPHGREHWAEMLANPRKPVEHWHQLV 274 (296)
T ss_dssp EECCCSSCTTCHHHHHHHHTSSSSSSSCSCSCCCCB
T ss_pred EEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEEECC
T ss_conf 899987733786067899999858998203751454
No 5
>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1
Probab=1.00 E-value=1 Score=156.32 Aligned_cols=124 Identities=28% Similarity=0.470 Sum_probs=102.7
Q ss_pred CCCCEEEEEEEEEECCCCCCCCCCCCCCCCCEEEEEECCEEEEEEEECCCCCCEEECEEEEEEECCCCEEEEEEEECCCC
Q ss_conf 99960899999970389787558999976809999989999983221388996230088999527997799999959978
Q 001696 608 KPPVGILEVGILGAQGLLPMKMKDGRGSTDAYCIAKYGQKWVRTRTILDTFNPKWNEQYTWEVYDPCTVITLGVFDNCHL 687 (1026)
Q Consensus 608 ~~~~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~g~~~~~T~~~~~t~~P~wne~~~~~v~~~~~~l~i~v~d~~~~ 687 (1026)
....|.|.|+|++|++|+++ +..|.+||||++.++++.++|+++++++||.|||.|.|.+.++...|.|+|||++.+
T Consensus 9 ~~~~~~L~v~v~~a~~L~~~---d~~g~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~i~V~d~d~~ 85 (133)
T 2ep6_A 9 VKDVGILQVKVLKAADLLAA---DFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDIHDVLEVTVFDEDGD 85 (133)
T ss_dssp CCCSEEEEEEEEEEESCCCS---SSSSCCCEEEEEEETTEEEECCCCSSCSSCCCCEEEEEEESCTTCEEEEEEEEEETT
T ss_pred CCCCEEEEEEEEEEECCCCC---CCCCCCCEEEEEEECCEEEEEEEECCCCCCCCCCEEEEEECCCCCEEEEEEEECCCC
T ss_conf 68741999999952789887---789893859999999998881413599998145689998459999999999989899
Q ss_pred CCCCCCCCCCCCCCCEEEEEEEECCCCCCCCEEEEEEEEEECCCCCCCCCCEEEEEEEEEE
Q ss_conf 9997568999989970099999766335895686559535508999754739999999966
Q 001696 688 GGGEKQNGSSAVRDSRIGKVRIRLSTLEAHRIYTHSYPLLVLHPHGVKKMGELQLAIRFTI 748 (1026)
Q Consensus 688 ~~~~~~~~~~~~~d~~iG~~~i~L~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~~ 748 (1026)
+ +|++||.+.|+|.++..+. .+||+|......+ +..|+|+|+++|.+
T Consensus 86 ~-----------~~~~lG~~~i~l~~l~~~~--~~w~~L~~~~~~~-~~~G~i~l~i~~~~ 132 (133)
T 2ep6_A 86 K-----------PPDFLGKVAIPLLSIRDGQ--PNCYVLKNKDLEQ-AFKGVIYLEMDLIY 132 (133)
T ss_dssp E-----------EEEECCBCEEEGGGCCSSC--CEECCCBCSCTTS-CCSSEEEEEEEEEE
T ss_pred C-----------CCCEEEEEEEEHHHCCCCC--CEEEEEECCCCCC-CCCEEEEEEEEEEE
T ss_conf 8-----------9973699999999956899--5699821688888-61569999999996
No 6
>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens}
Probab=1.00 E-value=1 Score=153.35 Aligned_cols=119 Identities=26% Similarity=0.303 Sum_probs=89.1
Q ss_pred CCCEEEEEEEEEECCCCCCCCCC-------CCCCCCCEEEEEECCEE-EEEEEECCCCCCEEECEEEEEEECCCCEEEEE
Q ss_conf 99608999999703897875589-------99976809999989999-98322138899623008899952799779999
Q 001696 609 PPVGILEVGILGAQGLLPMKMKD-------GRGSTDAYCIAKYGQKW-VRTRTILDTFNPKWNEQYTWEVYDPCTVITLG 680 (1026)
Q Consensus 609 ~~~g~l~v~v~~a~~L~~~~~~~-------~~g~~dpyv~v~~g~~~-~~T~~~~~t~~P~wne~~~~~v~~~~~~l~i~ 680 (1026)
...|.|+|+|++|++|++++... ..|.+||||++.++++. .+|+++++|+||+|||.|.|.+.+. ..|.|+
T Consensus 26 ~~~g~L~V~VieA~~L~~~D~~~~~~~f~~~~g~sDPYv~v~l~~~~~~kT~v~~ktlnP~WNE~F~f~v~~~-~~L~~~ 104 (157)
T 2fk9_A 26 KFNGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQVRVGQTSTKQKTNKPTYNEEFCANVTDG-GHLELA 104 (157)
T ss_dssp CEEEEEEEEEEEEECCCCCHHHHHTTTSSSSCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEEE-CEEEEE
T ss_pred CCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEECCEEEEEEEECCCCCCCCCCCEEEEECCCC-CEEEEE
T ss_conf 2760899999998899875555432202367888782999999999667865227999983375899991899-999999
Q ss_pred EEECCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCC----CEEEEEEEEEECCCCCCCCCCEEEEEEEEE
Q ss_conf 9959978999756899998997009999976633589----568655953550899975473999999996
Q 001696 681 VFDNCHLGGGEKQNGSSAVRDSRIGKVRIRLSTLEAH----RIYTHSYPLLVLHPHGVKKMGELQLAIRFT 747 (1026)
Q Consensus 681 v~d~~~~~~~~~~~~~~~~~d~~iG~~~i~L~~l~~~----~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~ 747 (1026)
|||++.++ +|++||++.|+|.++..+ .....||+|. ..|+|+|+++|.
T Consensus 105 V~D~d~~~-----------~dd~iG~~~i~l~~l~~~~~~~~~~~~W~~L~--------~~G~i~l~l~~~ 156 (157)
T 2fk9_A 105 VFHETPLG-----------YDHFVANCTLQFQELLRTTGASDTFEGWVDLE--------PEGKVFVVITLT 156 (157)
T ss_dssp EEECCSSS-----------SCEEEEEEEEEHHHHHHHHTTCSEEEEEEECB--------SSCEEEEEEEEC
T ss_pred EEECCCCC-----------CCCEEEEEEEEHHHHHCCCCCCCCCCEEEECC--------CCCEEEEEEEEE
T ss_conf 99899888-----------89899899999899322457787633799899--------993999999997
No 7
>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2
Probab=1.00 E-value=1 Score=152.41 Aligned_cols=123 Identities=24% Similarity=0.333 Sum_probs=103.0
Q ss_pred CCCEEEEEEEEEECCCCCCCCCCCCCCCCCEEEEEECCEEEEEEEEC-CCCCCEEECEEEEEEECCCCEEEEEEEECCCC
Q ss_conf 99608999999703897875589999768099999899999832213-88996230088999527997799999959978
Q 001696 609 PPVGILEVGILGAQGLLPMKMKDGRGSTDAYCIAKYGQKWVRTRTIL-DTFNPKWNEQYTWEVYDPCTVITLGVFDNCHL 687 (1026)
Q Consensus 609 ~~~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~g~~~~~T~~~~-~t~~P~wne~~~~~v~~~~~~l~i~v~d~~~~ 687 (1026)
.+.|.|.|+|++|++|+++ +..|.+||||++.++++.++|++++ +++||.|||.|.|.+.+....|.|+|||++.+
T Consensus 7 ~~~~~L~v~v~~a~~L~~~---d~~g~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~l~~~V~d~~~~ 83 (136)
T 1wfj_A 7 GPHGTLEVVLVSAKGLEDA---DFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEGTTELKAKIFDKDVG 83 (136)
T ss_dssp CCEEEEEEEEEEEEECSSC---CSSCSSCCCEEEESSSCEEECCCCTTCCSSCEEEEEEEEEEESSCCEEEEEECCSSSC
T ss_pred CCCEEEEEEEEECCCCCCC---CCCCCCCCEEEEEECCCCCEEEECCCCCCCCCCCCEEEEEECCCCCEEEEEEEECCCC
T ss_conf 9968999999963089875---6577868269999999612107224999899417679999779998899999978988
Q ss_pred CCCCCCCCCCCCCCCEEEEEEEECCCC-CCCCEEEEEEEEEECCCCCCCCCCEEEEEEEEEEC
Q ss_conf 999756899998997009999976633-58956865595355089997547399999999662
Q 001696 688 GGGEKQNGSSAVRDSRIGKVRIRLSTL-EAHRIYTHSYPLLVLHPHGVKKMGELQLAIRFTIF 749 (1026)
Q Consensus 688 ~~~~~~~~~~~~~d~~iG~~~i~L~~l-~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~~~ 749 (1026)
+ +|++||.+.|+|.++ ..+.....||+|. . +.+..|+|+|++.|.+.
T Consensus 84 ~-----------~d~~lG~~~i~l~~l~~~~~~~~~w~~L~-~---~~~~~G~i~l~l~~~p~ 131 (136)
T 1wfj_A 84 T-----------EDDAVGEATIPLEPVFVEGSIPPTAYNVV-K---DEEYKGEIWVALSFKPS 131 (136)
T ss_dssp T-----------TTCCSEEEEEESHHHHHHSEEEEEEEEEE-E---TTEEEEEEEEEEEEEEC
T ss_pred C-----------CCCEEEEEEEEHHHHCCCCCCCCEEEEEE-C---CCCCCEEEEEEEEEEEC
T ss_conf 8-----------99638999998798245788886789964-3---98558899999999868
No 8
>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus}
Probab=1.00 E-value=1 Score=151.52 Aligned_cols=123 Identities=27% Similarity=0.414 Sum_probs=59.4
Q ss_pred CEEEEEEEEEECCCCCCCCCCCCCCCCCEEEEEECC------EEEEEEEECCCCCCEEECEEEEEEECCCCEEEEEEEEC
Q ss_conf 608999999703897875589999768099999899------99983221388996230088999527997799999959
Q 001696 611 VGILEVGILGAQGLLPMKMKDGRGSTDAYCIAKYGQ------KWVRTRTILDTFNPKWNEQYTWEVYDPCTVITLGVFDN 684 (1026)
Q Consensus 611 ~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~g~------~~~~T~~~~~t~~P~wne~~~~~v~~~~~~l~i~v~d~ 684 (1026)
.|.|.|+|++|++|+.+ +..|.+||||++.+++ ..++|+++++++||.|||.|.|.+......|.|+|||+
T Consensus 7 ~g~L~V~v~~a~~L~~~---d~~g~~DPyv~v~l~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~L~~~V~d~ 83 (176)
T 3m7f_B 7 TRVVRVKVIAGIGLAKK---DILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFRVLPQRHRILFEVFDE 83 (176)
T ss_dssp CEEEEEEEEEEESCC------CCCCCCEEEEEEEEETTTEEEEEEECCCCSSCSSCEEEEEEEEEECTTTCEEEEEEEEC
T ss_pred CEEEEEEEEEEECCCCC---CCCCCCCCEEEEEEECCCCCCCCCEECCEECCCCCCCCCCEEEEEECCCCCEEEEEEEEC
T ss_conf 17999999973689876---789895818999998877886511657617799998646669999759999799999989
Q ss_pred CCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCEE-E-----EEEEEEECCCCCCCCCCEEEEEEEEEE
Q ss_conf 978999756899998997009999976633589568-6-----559535508999754739999999966
Q 001696 685 CHLGGGEKQNGSSAVRDSRIGKVRIRLSTLEAHRIY-T-----HSYPLLVLHPHGVKKMGELQLAIRFTI 748 (1026)
Q Consensus 685 ~~~~~~~~~~~~~~~~d~~iG~~~i~L~~l~~~~~~-~-----~~~~L~~~~~~g~~~~G~i~l~~~f~~ 748 (1026)
+.++ +|++||.+.|+|.++..+... . .||+|.....++ +..|+|+|+++|.+
T Consensus 84 d~~~-----------~d~~lG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~~~~-~~~G~l~l~l~~~p 141 (176)
T 3m7f_B 84 NRLT-----------RDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHPRSHKS-RVKGYLRLKMTYLP 141 (176)
T ss_dssp C---------------CEEEEEEEEESCSCCBC------CCCCEEEECBCSSTTC-CCCSEEEEEEEECC
T ss_pred CCCC-----------CCCEEEEEEEEHHHCCCCCCCCCCCCCCCEEECCCCCCCC-CCCEEEEEEEEEEE
T ss_conf 8877-----------8967799999989945567754544431178833567889-65779999999980
No 9
>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=151.51 Aligned_cols=124 Identities=20% Similarity=0.331 Sum_probs=99.1
Q ss_pred CEEEEEEEEEECCCCCCCCCCCCCCCCCEEEEEECCEEEEEEEECCCCCCEEECEEEEEEECC----CCEEEEEEEECCC
Q ss_conf 608999999703897875589999768099999899999832213889962300889995279----9779999995997
Q 001696 611 VGILEVGILGAQGLLPMKMKDGRGSTDAYCIAKYGQKWVRTRTILDTFNPKWNEQYTWEVYDP----CTVITLGVFDNCH 686 (1026)
Q Consensus 611 ~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~g~~~~~T~~~~~t~~P~wne~~~~~v~~~----~~~l~i~v~d~~~ 686 (1026)
.|.|.|+|++|++|+.+ +. |.+||||++.++++.++|+++++++||+|||.|.|.+..+ ...|.|+|||++.
T Consensus 6 ~g~L~v~v~~a~~L~~~---~~-g~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~~l~i~V~d~d~ 81 (140)
T 2dmh_A 6 SGMLRVIVESASNIPKT---KF-GKPDPIVSVIFKDEKKKTKKVDNELNPVWNEILEFDLRGIPLDFSSSLGIIVKDFET 81 (140)
T ss_dssp CCEEEEEEEEEESCCCC---SS-SCCCEEEEEECSSCEEECCCCCSCSSCEEEEEEEEECSSCCCCTTCEEEEEEEETTC
T ss_pred CCEEEEEEEEEECCCCC---CC-CCCCEEEEEEECCEEEEEEEECCCCCCCCCCEEEEEECCCCCCCCCEEEEEEEECCC
T ss_conf 84899999980589988---99-989949999999876783404699899617579998316565778889999997987
Q ss_pred CCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCEEEEEEEEEE-CCCCCCCCCCEEEEEEEEEEC
Q ss_conf 899975689999899700999997663358956865595355-089997547399999999662
Q 001696 687 LGGGEKQNGSSAVRDSRIGKVRIRLSTLEAHRIYTHSYPLLV-LHPHGVKKMGELQLAIRFTIF 749 (1026)
Q Consensus 687 ~~~~~~~~~~~~~~d~~iG~~~i~L~~l~~~~~~~~~~~L~~-~~~~g~~~~G~i~l~~~f~~~ 749 (1026)
++ +|++||.+.|+|.++..+.....||+|.. ....+....|+|+|+++|.+.
T Consensus 82 ~~-----------~~~~lG~~~i~l~~l~~~~~~~~w~~l~~l~~~~~~~~~G~l~l~~~~~p~ 134 (140)
T 2dmh_A 82 IG-----------QNKLIGTATVALKDLTGDQSRSLPYKLISLLNEKGQDTGATIDLVIGYDPP 134 (140)
T ss_dssp SS-----------SCCCCEEEEEEGGGTCSSSCEEEEEEEEEEECTTCCEEEEEEEEEEEECCC
T ss_pred CC-----------CCCEEEEEEEEHHHHCCCCCCEEEEEEEECCCCCCCCCCCEEEEEEEEECC
T ss_conf 77-----------995689999998994447983168851663378898878789999999789
No 10
>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A
Probab=1.00 E-value=1 Score=151.13 Aligned_cols=124 Identities=27% Similarity=0.398 Sum_probs=69.3
Q ss_pred CCCEEEEEEEEEECCCCCCCCCCCCCCCCCEEEEEECC------EEEEEEEECCCCCCEEECEEEEEEECCCCEEEEEEE
Q ss_conf 99608999999703897875589999768099999899------999832213889962300889995279977999999
Q 001696 609 PPVGILEVGILGAQGLLPMKMKDGRGSTDAYCIAKYGQ------KWVRTRTILDTFNPKWNEQYTWEVYDPCTVITLGVF 682 (1026)
Q Consensus 609 ~~~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~g~------~~~~T~~~~~t~~P~wne~~~~~v~~~~~~l~i~v~ 682 (1026)
+..+.|.|+|++|++|+.+ +..|.+||||++.+++ ..++|+++++++||.|||.|.|.+......|.|+||
T Consensus 17 ~~~~~L~V~v~~a~~L~~~---d~~g~~dpyv~v~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~l~~~V~ 93 (153)
T 3b7y_A 17 ENSRIVRVRVIAGIGLAKK---DILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFRVHPQQHRLLFEVF 93 (153)
T ss_dssp TTCEEEEEEEEEEESCC----------CCEEEEEEEEETTTEEEEEEECCCCSSCSSCCCCEEEEEEECTTTCEEEEEEE
T ss_pred CCCCEEEEEEEEEECCCCC---CCCCCCCCEEEEEEECCCCCCCEEEECCCCCCCCCCCCCCEEEEEECCCCCEEEEEEE
T ss_conf 8731899999985689888---8898978179999977888620004675065999989998899983398898999999
Q ss_pred ECCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCE------EEEEEEEEECCCCCCCCCCEEEEEEEEE
Q ss_conf 5997899975689999899700999997663358956------8655953550899975473999999996
Q 001696 683 DNCHLGGGEKQNGSSAVRDSRIGKVRIRLSTLEAHRI------YTHSYPLLVLHPHGVKKMGELQLAIRFT 747 (1026)
Q Consensus 683 d~~~~~~~~~~~~~~~~~d~~iG~~~i~L~~l~~~~~------~~~~~~L~~~~~~g~~~~G~i~l~~~f~ 747 (1026)
|++.++ +|++||.+.|+|.++..+.. ...||+|......+ +..|+|+|++.|.
T Consensus 94 d~d~~~-----------~d~~iG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~~~~-~~~G~i~l~l~~~ 152 (153)
T 3b7y_A 94 DENRLT-----------RDDFLGQVDVPLYPLPTENPRLERPYTFKDFVLHPRSHKS-RVKGYLRLKMTYL 152 (153)
T ss_dssp ECCSSS-----------CCEEEEEEEEECCSCCBCCTTSCCCCCCEEEECBCSSTTC-CCCSEEEEEEEEC
T ss_pred ECCCCC-----------CCCEEEEEEEEHHHCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCEEEEEEEEEE
T ss_conf 899996-----------8970599999989924479842002440103134455799-7435999999995
Done!