BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001698
(1026 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3H1D|A Chain A, Structure Of The Huwe1 Hect Domain
Length = 405
Score = 191 bits (484), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 134/407 (32%), Positives = 203/407 (49%), Gaps = 22/407 (5%)
Query: 626 EILKQAPFLVPFTSRAKIFQSQLASVRQ--RHGSHGVFTRSRFRIRRDHILEDAYSQMST 683
E+L Q P + F + K F+ +L + + R V +RRDH+ ED+Y ++
Sbjct: 15 EVLFQGPHM-DFDVKRKYFRQELERLDEGLRKEDMAV------HVRRDHVFEDSYRELHR 67
Query: 684 MSEEDLRGAIRVTFVNELGVEEAGIDGGGIFKDFMENITRAAFDVQYGLFKET-SDHLLY 742
S E+++ + + F E G D GG+ +++ I+R F+ Y LF+ + D + Y
Sbjct: 68 KSPEEMKNRLYIVFEGE-----EGQDAGGLLREWYMIISREMFNPMYALFRTSPGDRVTY 122
Query: 743 PNPGSGMIHEQHLQFFHFLGILLAKAMFEGILVDIPFATFFLSKLKQKYNYLNDLPSLDP 802
S + HL +F F+G ++AKA+++ L++ F F + K D+ S D
Sbjct: 123 TINPSSHANPNHLSYFKFVGRIVAKAVYDNRLLECYFTRSFYKHILGKSVRYTDMESEDY 182
Query: 803 ELYRHLIFLKHYEADISEL--ELYFVILNNEYGEQTEEELLPGGKNIRVTNENVITFIHL 860
Y+ L++L E D+S L +L F E+G +L P G NI VT EN ++HL
Sbjct: 183 HFYQGLVYL--LENDVSTLGYDLTFSTEVQEFGVAEVRDLKPNGANILVTEENKKEYVHL 240
Query: 861 VSNHRLNFQIRQQSSHFLRGFQQLIQKDWIDMFNEHEXXXXXXXXXXXXXXXXXRQNTNY 920
V R+ IR+Q + FL GF ++I K I +F E E + NT Y
Sbjct: 241 VCQMRMTGAIRKQLAAFLEGFYEIIPKRLISIFTEQE-LELLISGLPTIDIDDLKSNTEY 299
Query: 921 VGGYHSEHYVIEMFWEVLKSFSLENQKKFLKFVTGCSRGPLLGFKYLEPLFCIQRAAGSA 980
Y S I+ FW L+SF ++ KFL+FVTG S+ PL GF LE + IQ+
Sbjct: 300 -HKYQSNSIQIQWFWRALRSFDQADRAKFLQFVTGTSKVPLQGFAALEGMNGIQKFQIHR 358
Query: 981 SEEALDRLPTSATCMNLLKLPPYRSKEQMSTKLLYAIN-AEAGFDLS 1026
+ + DRLP++ TC N L LP Y S E++ LL AI A GF L+
Sbjct: 359 DDRSTDRLPSAHTCFNQLDLPAYESFEKLRHMLLLAIQEASEGFGLA 405
>pdb|3G1N|A Chain A, Catalytic Domain Of The Human E3 Ubiquitin-Protein Ligase
Huwe1
pdb|3G1N|B Chain B, Catalytic Domain Of The Human E3 Ubiquitin-Protein Ligase
Huwe1
Length = 388
Score = 187 bits (474), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 123/363 (33%), Positives = 185/363 (50%), Gaps = 13/363 (3%)
Query: 668 IRRDHILEDAYSQMSTMSEEDLRGAIRVTFVNELGVEEAGIDGGGIFKDFMENITRAAFD 727
+RRDH+ ED+Y ++ S E+++ + + F E G D GG+ +++ I+R F+
Sbjct: 35 VRRDHVFEDSYRELHRKSPEEMKNRLYIVFEGE-----EGQDAGGLLREWYMIISREMFN 89
Query: 728 VQYGLFKET-SDHLLYPNPGSGMIHEQHLQFFHFLGILLAKAMFEGILVDIPFATFFLSK 786
Y LF+ + D + Y S + HL +F F+G ++AKA+++ L++ F F
Sbjct: 90 PMYALFRTSPGDRVTYTINPSSHCNPNHLSYFKFVGRIVAKAVYDNRLLECYFTRSFYKH 149
Query: 787 LKQKYNYLNDLPSLDPELYRHLIFLKHYEADISEL--ELYFVILNNEYGEQTEEELLPGG 844
+ K D+ S D Y+ L++L E D+S L +L F E+G +L P G
Sbjct: 150 ILGKSVRYTDMESEDYHFYQGLVYL--LENDVSTLGYDLTFSTEVQEFGVCEVRDLKPNG 207
Query: 845 KNIRVTNENVITFIHLVSNHRLNFQIRQQSSHFLRGFQQLIQKDWIDMFNEHEXXXXXXX 904
NI VT EN ++HLV R+ IR+Q + FL GF ++I K I +F E E
Sbjct: 208 ANILVTEENKKEYVHLVCQMRMTGAIRKQLAAFLEGFYEIIPKRLISIFTEQE-LELLIS 266
Query: 905 XXXXXXXXXXRQNTNYVGGYHSEHYVIEMFWEVLKSFSLENQKKFLKFVTGCSRGPLLGF 964
+ NT Y Y S I+ FW L+SF ++ KFL+FVTG S+ PL GF
Sbjct: 267 GLPTIDIDDLKSNTEY-HKYQSNSIQIQWFWRALRSFDQADRAKFLQFVTGTSKVPLQGF 325
Query: 965 KYLEPLFCIQRAAGSASEEALDRLPTSATCMNLLKLPPYRSKEQMSTKLLYAIN-AEAGF 1023
LE + IQ+ + + DRLP++ TC N L LP Y S E++ LL AI GF
Sbjct: 326 AALEGMNGIQKFQIHRDDRSTDRLPSAHTCFNQLDLPAYESFEKLRHMLLLAIQECSEGF 385
Query: 1024 DLS 1026
L+
Sbjct: 386 GLA 388
>pdb|2XBB|A Chain A, Nedd4 Hect:ub Complex
pdb|2XBB|B Chain B, Nedd4 Hect:ub Complex
pdb|2XBF|A Chain A, Nedd4 Hect Structure
Length = 386
Score = 179 bits (454), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 122/369 (33%), Positives = 192/369 (52%), Gaps = 28/369 (7%)
Query: 667 RIRRDHILEDAYSQMSTMSEED-LRGAIRVTFVNELGVEEAGIDGGGIFKDFMENITRAA 725
++RR +LED+Y ++ + D L+ + + F E G+D GG+ +++ I++
Sbjct: 32 KLRRATVLEDSYRRIMGVKRADFLKARLWIEFDGE-----KGLDYGGVAREWFFLISKEM 86
Query: 726 FDVQYGLFK--ETSDHLLYPNPGSGMIHEQHLQFFHFLGILLAKAMFEGILVDIPFATFF 783
F+ YGLF+ T ++ L NP SG+ +E HL +F F+G + A++ G L+D F F
Sbjct: 87 FNPYYGLFEYSATDNYTLQINPNSGLCNEDHLSYFKFIGRVAGMAVYHGKLLDGFFIRPF 146
Query: 784 LSKLKQKYNYLNDLPSLDPELYRHLIFLKHYEADISELELYFVILNNEYGEQTEEELLPG 843
+ K L+D+ S+D E Y L ++ E D +EL+L F+I +G+ + EL G
Sbjct: 147 YKMMLHKPITLHDMESVDSEYYNSLRWI--LENDPTELDLRFIIDEELFGQTHQHELKNG 204
Query: 844 GKNIRVTNENVITFIHLVSNHRLNFQIRQQSSHFLRGFQQLIQKDWIDMFNEHEXXXXXX 903
G I VTN+N +I+LV R +I++Q + F GF +LI +D I +F+E+E
Sbjct: 205 GSEIVVTNKNKKEYIYLVIQWRFVNRIQKQMAAFKEGFFELIPQDLIKIFDENE-LELLM 263
Query: 904 XXXXXXXXXXXRQNTNYVGGYHSEHYVIEMFWEVLKSFSLENQKKFLKFVTGCSRGPLLG 963
R++T Y GY + H VI+ FW+ + E + + L+FVTG SR P+ G
Sbjct: 264 CGLGDVDVNDWREHTKYKNGYSANHQVIQWFWKAVLMMDSEKRIRLLQFVTGTSRVPMNG 323
Query: 964 FKYLEPLFCIQRAAGSASEEAL--------DRLPTSATCMNLLKLPPYRSKEQMSTKLLY 1015
F L GS ++ ++LP + TC N L LPPY S E++ KL
Sbjct: 324 FAEL---------YGSNGPQSFTVEQWGTPEKLPRAHTCFNRLDLPPYESFEELWDKLQM 374
Query: 1016 AINAEAGFD 1024
AI GFD
Sbjct: 375 AIENTQGFD 383
>pdb|3JVZ|C Chain C, E2~ubiquitin-Hect
pdb|3JVZ|D Chain D, E2~ubiquitin-Hect
Length = 385
Score = 175 bits (444), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 119/371 (32%), Positives = 192/371 (51%), Gaps = 22/371 (5%)
Query: 662 TRSRFRIRRDHILEDAYSQMSTMSEED-LRGAIRVTFVNELGVEEAGIDGGGIFKDFMEN 720
R ++ R++I E++Y ++ ++ D L+ + + F +E G+D GG+ +++
Sbjct: 26 NRFEMKLHRNNIFEESYRRIMSVKRPDVLKARLWIEFESE-----KGLDYGGVAREWFFL 80
Query: 721 ITRAAFDVQYGLFK--ETSDHLLYPNPGSGMIHEQHLQFFHFLGILLAKAMFEGILVDIP 778
+++ F+ YGLF+ T ++ L NP SG+ +E HL +F F+G + A+F G L+D
Sbjct: 81 LSKEMFNPYYGLFEYSATDNYTLQINPNSGLCNEDHLSYFTFIGRVAGLAVFHGKLLDGF 140
Query: 779 FATFFLSKLKQKYNYLNDLPSLDPELYRHLIFLKHYEADISELELYFVILNNEYGEQTEE 838
F F + K LND+ S+D E Y L ++ E D +EL+L F I +G+ +
Sbjct: 141 FIRPFYKMMLGKQITLNDMESVDSEYYNSLKWI--LENDPTELDLMFCIDEENFGQTYQV 198
Query: 839 ELLPGGKNIRVTNENVITFIHLVSNHRLNFQIRQQSSHFLRGFQQLIQKDWIDMFNEHEX 898
+L P G I VTNEN +I LV R ++++Q + FL GF +L+ D I +F+E+E
Sbjct: 199 DLKPNGSEIMVTNENKREYIDLVIQWRFVNRVQKQMNAFLEGFTELLPIDLIKIFDENE- 257
Query: 899 XXXXXXXXXXXXXXXXRQNTNYVGGYHSEHYVIEMFWEVLKSFSLENQKKFLKFVTGCSR 958
RQ++ Y GY H VI+ FW+ + E + + L+FVTG SR
Sbjct: 258 LELLMCGLGDVDVNDWRQHSIYKNGYCPNHPVIQWFWKAVLLMDAEKRIRLLQFVTGTSR 317
Query: 959 GPLLGFKYL-----EPLFCIQRAAGSASEEALDRLPTSATCMNLLKLPPYRSKEQMSTKL 1013
P+ GF L LF I++ ++LP + T N L LPPY + E + KL
Sbjct: 318 VPMNGFAELYGSNGPQLFTIEQWGSP------EKLPRAHTAFNRLDLPPYETFEDLREKL 371
Query: 1014 LYAINAEAGFD 1024
L A+ GF+
Sbjct: 372 LMAVENAQGFE 382
>pdb|3JW0|C Chain C, E2~ubiquitin-Hect
pdb|3JW0|D Chain D, E2~ubiquitin-Hect
Length = 385
Score = 175 bits (444), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 119/371 (32%), Positives = 192/371 (51%), Gaps = 22/371 (5%)
Query: 662 TRSRFRIRRDHILEDAYSQMSTMSEED-LRGAIRVTFVNELGVEEAGIDGGGIFKDFMEN 720
R ++ R++I E++Y ++ ++ D L+ + + F +E G+D GG+ +++
Sbjct: 26 NRFEMKLHRNNIFEESYRRIMSVKRPDVLKARLWIEFESE-----KGLDYGGVAREWFFL 80
Query: 721 ITRAAFDVQYGLFK--ETSDHLLYPNPGSGMIHEQHLQFFHFLGILLAKAMFEGILVDIP 778
+++ F+ YGLF+ T ++ L NP SG+ +E HL +F F+G + A+F G L+D
Sbjct: 81 LSKEMFNPYYGLFEYSATDNYTLQINPNSGLCNEDHLSYFTFIGRVAGLAVFHGKLLDGF 140
Query: 779 FATFFLSKLKQKYNYLNDLPSLDPELYRHLIFLKHYEADISELELYFVILNNEYGEQTEE 838
F F + K LND+ S+D E Y L ++ E D +EL+L F I +G+ +
Sbjct: 141 FIRPFYKMMLGKQITLNDMESVDSEYYNSLKWI--LENDPTELDLMFCIDEENFGQTYQV 198
Query: 839 ELLPGGKNIRVTNENVITFIHLVSNHRLNFQIRQQSSHFLRGFQQLIQKDWIDMFNEHEX 898
+L P G I VTNEN +I LV R ++++Q + FL GF +L+ D I +F+E+E
Sbjct: 199 DLKPNGSEIMVTNENKREYIDLVIQWRFVNRVQKQMNAFLEGFTELLPIDLIKIFDENE- 257
Query: 899 XXXXXXXXXXXXXXXXRQNTNYVGGYHSEHYVIEMFWEVLKSFSLENQKKFLKFVTGCSR 958
RQ++ Y GY H VI+ FW+ + E + + L+FVTG SR
Sbjct: 258 LELLMCGLGDVDVNDWRQHSIYKNGYCPNHPVIQWFWKAVLLMDAEKRIRLLQFVTGTSR 317
Query: 959 GPLLGFKYL-----EPLFCIQRAAGSASEEALDRLPTSATCMNLLKLPPYRSKEQMSTKL 1013
P+ GF L LF I++ ++LP + T N L LPPY + E + KL
Sbjct: 318 VPMNGFAELYGSNGPQLFTIEQWGSP------EKLPRAHTSFNRLDLPPYETFEDLREKL 371
Query: 1014 LYAINAEAGFD 1024
L A+ GF+
Sbjct: 372 LMAVENAQGFE 382
>pdb|2ONI|A Chain A, Catalytic Domain Of The Human Nedd4-Like E3 Ligase
Length = 392
Score = 172 bits (437), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 119/364 (32%), Positives = 188/364 (51%), Gaps = 22/364 (6%)
Query: 662 TRSRFRIRRDHILEDAYSQMSTMSEED-LRGAIRVTFVNELGVEEAGIDGGGIFKDFMEN 720
R ++ R++I E++Y ++ ++ D L+ + + F +E G+D GG+ +++
Sbjct: 41 NRFEXKLHRNNIFEESYRRIXSVKRPDVLKARLWIEFESE-----KGLDYGGVAREWFFL 95
Query: 721 ITRAAFDVQYGLFK--ETSDHLLYPNPGSGMIHEQHLQFFHFLGILLAKAMFEGILVDIP 778
+++ F+ YGLF+ T ++ L NP SG+ +E HL +F F+G + A+F G L+D
Sbjct: 96 LSKEXFNPYYGLFEYSATDNYTLQINPNSGLCNEDHLSYFTFIGRVAGLAVFHGKLLDGF 155
Query: 779 FATFFLSKLKQKYNYLNDLPSLDPELYRHLIFLKHYEADISELELYFVILNNEYGEQTEE 838
F F K LND S+D E Y L ++ E D +EL+L F I +G+ +
Sbjct: 156 FIRPFYKXXLGKQITLNDXESVDSEYYNSLKWI--LENDPTELDLXFCIDEENFGQTYQV 213
Query: 839 ELLPGGKNIRVTNENVITFIHLVSNHRLNFQIRQQSSHFLRGFQQLIQKDWIDMFNEHEX 898
+L P G I VTNEN +I LV R ++++Q + FL GF +L+ D I +F+E+E
Sbjct: 214 DLKPNGSEIXVTNENKREYIDLVIQWRFVNRVQKQXNAFLEGFTELLPIDLIKIFDENE- 272
Query: 899 XXXXXXXXXXXXXXXXRQNTNYVGGYHSEHYVIEMFWEVLKSFSLENQKKFLKFVTGCSR 958
RQ++ Y GY H VI+ FW+ + E + + L+FVTG SR
Sbjct: 273 LELLXCGLGDVDVNDWRQHSIYKNGYCPNHPVIQWFWKAVLLXDAEKRIRLLQFVTGTSR 332
Query: 959 GPLLGFKYL-----EPLFCIQRAAGSASEEALDRLPTSATCMNLLKLPPYRSKEQMSTKL 1013
P GF L LF I++ ++LP + TC N L LPPY + E + KL
Sbjct: 333 VPXNGFAELYGSNGPQLFTIEQWGSP------EKLPRAHTCFNRLDLPPYETFEDLREKL 386
Query: 1014 LYAI 1017
L A+
Sbjct: 387 LXAV 390
>pdb|3TUG|A Chain A, Crystal Structure Of The Hect Domain Of Itch E3 Ubiquitin
Ligase
Length = 398
Score = 171 bits (433), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 113/363 (31%), Positives = 176/363 (48%), Gaps = 21/363 (5%)
Query: 668 IRRDHILEDAYSQMSTMSEEDLRGAIRVTFVNELGVEEAGIDGGGIFKDFMENITRAAFD 727
+ R + ED++ Q+ + S +DLR + V F E G+D GG+ +++ ++ +
Sbjct: 47 VTRKTLFEDSFQQIMSFSPQDLRRRLWVIFPGE-----EGLDYGGVAREWFFLLSHEVSN 101
Query: 728 VQYGLFKETS--DHLLYPNPGSGMIHEQHLQFFHFLGILLAKAMFEGILVDIPFATFFLS 785
Y LF+ ++ L NP S I+ HL++F F+G +A A+F G +D F+ F
Sbjct: 102 PMYCLFEYAGKDNYCLQINPAS-YINPDHLKYFRFIGRFIAMALFHGKFIDTGFSLPFYK 160
Query: 786 KLKQKYNYLNDLPSLDPELYRHLIFLKHYEADISELELYFVILNNEYGEQTEEELLPGGK 845
++ K L DL S+DPE Y LI++K + +LE+YF + GE +L P G
Sbjct: 161 RILNKPVGLKDLESIDPEFYNSLIWVKENNIEECDLEMYFSVDKEILGEIKSHDLKPNGG 220
Query: 846 NIRVTNENVITFIHLVSNHRLNFQIRQQSSHFLRGFQQLIQKDWIDMFNEHEXXXXXXXX 905
NI VT EN +I +V+ RL+ + +Q+ F GF +++ + ++ F+ E
Sbjct: 221 NILVTEENKEEYIRMVAEWRLSRGVEEQTQAFFEGFNEILPQQYLQYFDAKELEVLLCGM 280
Query: 906 XXXXXXXXXRQNTNYVGGYHSEHYVIEMFWEVLKSFSLENQKKFLKFVTGCSRGPLLGFK 965
R Y I FW+ +K E + + L+FVTG R P+ GF
Sbjct: 281 QEIDLNDWQRHAI--YRRYARTSKQIMWFWQFVKEIDNEKRMRLLQFVTGTCRLPVGGFA 338
Query: 966 YL-----EPLFCIQRAAGSASEEALDRLPTSATCMNLLKLPPYRSKEQMSTKLLYAINAE 1020
L FCI++ + LP S TC N L LPPY+S EQ+ KLL+AI
Sbjct: 339 DLMGSNGPQKFCIEKVGKE------NWLPRSHTCFNRLDLPPYKSYEQLKEKLLFAIEET 392
Query: 1021 AGF 1023
GF
Sbjct: 393 EGF 395
>pdb|1ND7|A Chain A, Conformational Flexibility Underlies Ubiquitin Ligation
Mediated By The Wwp1 Hect Domain E3 Ligase
Length = 374
Score = 168 bits (426), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 117/381 (30%), Positives = 186/381 (48%), Gaps = 21/381 (5%)
Query: 644 FQSQLASVRQRHGSHGVFTRSRFRIRRDHILEDAYSQMSTMSEEDLRGAIRVTFVNELGV 703
F+ +LA R S+ + + + + R + ED++ Q+ + DLR + V F E
Sbjct: 4 FRWKLAHFRYLCQSNALPSHVKINVSRQTLFEDSFQQIMALKPYDLRRRLYVIFRGE--- 60
Query: 704 EEAGIDGGGIFKDFMENITRAAFDVQYGLFKET--SDHLLYPNPGSGMIHEQHLQFFHFL 761
G+D GG+ +++ ++ + Y LF+ +++ L NP S I+ HL +F F+
Sbjct: 61 --EGLDYGGLAREWFFLLSHEVLNPMYCLFEYAGKNNYCLQINPAS-TINPDHLSYFCFI 117
Query: 762 GILLAKAMFEGILVDIPFATFFLSKLKQKYNYLNDLPSLDPELYRHLIFLKHYEADISEL 821
G +A A+F G +D F+ F ++ K + DL S+D E Y LI+++ + L
Sbjct: 118 GRFIAMALFHGKFIDTGFSLPFYKRMLSKKLTIKDLESIDTEFYNSLIWIRDNNIEECGL 177
Query: 822 ELYFVILNNEYGEQTEEELLPGGKNIRVTNENVITFIHLVSNHRLNFQIRQQSSHFLRGF 881
E+YF + G+ T +L GG NI VT EN +I L++ R + +++Q+ FL GF
Sbjct: 178 EMYFSVDMEILGKVTSHDLKLGGSNILVTEENKDEYIGLMTEWRFSRGVQEQTKAFLDGF 237
Query: 882 QQLIQKDWIDMFNEHEXXXXXXXXXXXXXXXXXRQNTNYVGGYHSEHYVIEMFWEVLKSF 941
+++ W+ F+E E R NT Y + +I FW+ +K
Sbjct: 238 NEVVPLQWLQYFDEKELEVMLCGMQEVDLADWQR-NTVYRHYTRNSKQII-WFWQFVKET 295
Query: 942 SLENQKKFLKFVTGCSRGPLLGFKYL-----EPLFCIQRAAGSASEEALDRLPTSATCMN 996
E + + L+FVTG R PL GF L FCI++ LP S TC N
Sbjct: 296 DNEVRMRLLQFVTGTCRLPLGGFAELMGSNGPQKFCIEKVGKDTW------LPRSHTCFN 349
Query: 997 LLKLPPYRSKEQMSTKLLYAI 1017
L LPPY+S EQ+ KLL+AI
Sbjct: 350 RLDLPPYKSYEQLKEKLLFAI 370
>pdb|1C4Z|A Chain A, Structure Of E6ap: Insights Into Ubiquitination Pathway
pdb|1C4Z|B Chain B, Structure Of E6ap: Insights Into Ubiquitination Pathway
pdb|1C4Z|C Chain C, Structure Of E6ap: Insights Into Ubiquitination Pathway
pdb|1D5F|A Chain A, Structure Of An E6ap-Ubch7 Complex: Insights Into The
Ubiquitination Pathway
pdb|1D5F|B Chain B, Structure Of An E6ap-Ubch7 Complex: Insights Into The
Ubiquitination Pathway
pdb|1D5F|C Chain C, Structure Of An E6ap-Ubch7 Complex: Insights Into The
Ubiquitination Pathway
Length = 358
Score = 162 bits (411), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 116/367 (31%), Positives = 177/367 (48%), Gaps = 22/367 (5%)
Query: 665 RFRIRRDHILEDAYSQMSTMSEE---DLRGAIRVTFVNELGVEEAGIDGGGIFKDFMENI 721
R ++RRDHI++DA ++ ++ E DL+ + V F E GV+E GG+ K+F + +
Sbjct: 7 RLKVRRDHIIDDALVRLEMIAMENPADLKKQLYVEFEGEQGVDE-----GGVSKEFFQLV 61
Query: 722 TRAAFDVQYGLFK-ETSDHLLYPNPGSGMIHEQHLQFFHFLGILLAKAMFEGILVDIPFA 780
F+ G+F + S L + NP S Q F +GI+L A++ ++D+ F
Sbjct: 62 VEEIFNPDIGMFTYDESTKLFWFNPSSFETEGQ----FTLIGIVLGLAIYNNCILDVHFP 117
Query: 781 TFFLSKLKQKYNYLNDLPSLDPELYRHLIFLKHYEADI-SELELYFVILNNE-YGEQTEE 838
KL K DL P LY+ L L YE ++ ++ + F I + +G
Sbjct: 118 MVVYRKLMGKKGTFRDLGDSHPVLYQSLKDLLEYEGNVEDDMMITFQISQTDLFGNPMMY 177
Query: 839 ELLPGGKNIRVTNENVITFIHLVSNHRLNFQIRQQSSHFLRGFQQLIQKDWIDMFNEHEX 898
+L G I +TNEN F++L S++ LN + +Q F RGF + + + E
Sbjct: 178 DLKENGDKIPITNENRKEFVNLYSDYILNKSVEKQFKAFRRGFHMVTNESPLKYLFRPEE 237
Query: 899 XXXXXXXXXXXXXXXXRQNTNYVGGYHSEHYVIEMFWEVLKSFSLENQKKFLKFVTGCSR 958
+ T Y GGY + +I FWE++ SF+ E ++ FL+F TG R
Sbjct: 238 IELLICGSRNLDFQALEETTEYDGGYTRDSVLIREFWEIVHSFTDEQKRLFLQFTTGTDR 297
Query: 959 GPLLGFKYLEPLFCIQRAAGSASEEALDRLPTSATCMNLLKLPPYRSKEQMSTKLLYAIN 1018
P+ G L L I G +E RLPTS TC N+L LP Y SKE++ +LL AI
Sbjct: 298 APVGG---LGKLKMIIAKNGPDTE----RLPTSHTCFNVLLLPEYSSKEKLKERLLKAIT 350
Query: 1019 AEAGFDL 1025
GF +
Sbjct: 351 YAKGFGM 357
>pdb|1ZVD|A Chain A, Regulation Of Smurf2 Ubiquitin Ligase Activity By Anchoring
The E2 To The Hect Domain
Length = 380
Score = 157 bits (397), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 115/395 (29%), Positives = 192/395 (48%), Gaps = 29/395 (7%)
Query: 637 FTSRAKIFQSQLASVRQRHGSHGVFTRSRFRIRRDHILEDAYSQMSTMSEEDLRGAIRVT 696
+ KI + +L+ + + G R + R+ I E++Y Q+ +DL + +
Sbjct: 4 LVQKLKILRQELSQQQPQAG------HCRIEVSREEIFEESYRQVXKXRPKDLWKRLXIK 57
Query: 697 FVNELGVEEAGIDGGGIFKDFMENITRAAFDVQYGLFKETSDHL--LYPNPGSGMIHEQH 754
F E G+D GG+ ++++ ++ + YGLF+ + D + L NP S ++ +H
Sbjct: 58 FRGE-----EGLDYGGVAREWLYLLSHEXLNPYYGLFQYSRDDIYTLQINPDSA-VNPEH 111
Query: 755 LQFFHFLGILLAKAMFEGILVDIPFATFFLSKLKQKYNYLNDLPSLDPELYRHLIFLKHY 814
L +FHF+G + A+F G +D F F +L K L+D +DP+L+ L+++
Sbjct: 112 LSYFHFVGRIXGXAVFHGHYIDGGFTLPFYKQLLGKSITLDDXELVDPDLHNSLVWI--L 169
Query: 815 EADISE-LELYFVILNNEYGEQTEEELLPGGKNIRVTNENVITFIHLVSNHRLNFQIRQQ 873
E DI+ L+ F + +N YGE + EL P GK+I V EN ++ L N R I Q
Sbjct: 170 ENDITGVLDHTFCVEHNAYGEIIQHELKPNGKSIPVNEENKKEYVRLYVNWRFLRGIEAQ 229
Query: 874 SSHFLRGFQQLIQKDWIDMFNEHEXXXXXXXXXXXXXXXXXRQNTNYVGGYHSEHYVIEM 933
+GF ++I + + F+E E + NT + + +++
Sbjct: 230 FLALQKGFNEVIPQHLLKTFDEKE-LELIICGLGKIDVNDWKVNTR-LKHCTPDSNIVKW 287
Query: 934 FWEVLKSFSLENQKKFLKFVTGCSRGPLLGFKYLEP-----LFCIQRAAGSASEEALDRL 988
FW+ ++ F E + + L+FVTG SR PL GFK L+ LF I + + + L
Sbjct: 288 FWKAVEFFDEERRARLLQFVTGSSRVPLQGFKALQGAAGPRLFTIHQI-----DACTNNL 342
Query: 989 PTSATCMNLLKLPPYRSKEQMSTKLLYAINAEAGF 1023
P + TC N + +PPY S E++ KLL AI GF
Sbjct: 343 PKAHTCFNRIDIPPYESYEKLYEKLLTAIEETCGF 377
>pdb|3OLM|A Chain A, Structure And Function Of A Ubiquitin Binding Site Within
The Catalytic Domain Of A Hect Ubiquitin Ligase
Length = 429
Score = 156 bits (394), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 105/364 (28%), Positives = 182/364 (50%), Gaps = 22/364 (6%)
Query: 667 RIRRDHILEDAYSQMSTMSEEDLRGAIRVTFVNELGVEEAGIDGGGIFKDFMENITRAAF 726
++RR +I EDAY ++ + EDL+ + + F E G+D GG+ ++F ++ F
Sbjct: 78 KVRRKNIFEDAYQEIMRQTPEDLKKRLMIKFDGE-----EGLDYGGVSREFFFLLSHEMF 132
Query: 727 DVQYGLFKETS--DHLLYPNPGSGMIHEQHLQFFHFLGILLAKAMFEGILVDIPFATFFL 784
+ Y LF+ ++ ++ + NP SG I+ +HL +F F+G ++ +F +D F
Sbjct: 133 NPFYCLFEYSAYDNYTIQINPNSG-INPEHLNYFKFIGRVVGLGVFHRRFLDAFFVGALY 191
Query: 785 SKLKQKYNYLNDLPSLDPELYRHLIFLKHYEADISELELYFVILNNEYGEQTEEELLPGG 844
+ +K L D+ +D E+Y L ++ D L+L F + +GE +L P G
Sbjct: 192 KMMLRKKVVLQDMEGVDAEVYNSLNWMLENSID-GVLDLTFSADDERFGEVVTVDLKPDG 250
Query: 845 KNIRVTNENVITFIHLVSNHRLNFQIRQQSSHFLRGFQQLIQKDWIDMFNEHEXXXXXXX 904
+NI VT+ N ++ L + R+ ++++Q F+ GF +LI +D + +F+E E
Sbjct: 251 RNIEVTDGNKKEYVELYTQWRIVDRVQEQFKAFMDGFNELIPEDLVTVFDERE-LELLIG 309
Query: 905 XXXXXXXXXXRQNTNYVGGYHSEHYVIEMFWEVLKSFSLENQKKFLKFVTGCSRGPLLGF 964
+++T+Y GY VI+ FW+ + + E + + L+F TG SR P+ GF
Sbjct: 310 GIAEIDIEDWKKHTDY-RGYQESDEVIQWFWKCVSEWDNEQRARLLQFTTGTSRIPVNGF 368
Query: 965 KYLEP-----LFCIQRAAGSASEEALDRLPTSATCMNLLKLPPYRSKEQMSTKLLYAINA 1019
K L+ F I++A + +LP S TC N + LP Y + M KL A+
Sbjct: 369 KDLQGSDGPRRFTIEKAG------EVQQLPKSHTCFNRVDLPQYVDYDSMKQKLTLAVEE 422
Query: 1020 EAGF 1023
GF
Sbjct: 423 TIGF 426
>pdb|3PT3|A Chain A, Crystal Structure Of The C-Terminal Lobe Of The Human Ubr5
Hect Domain
pdb|3PT3|B Chain B, Crystal Structure Of The C-Terminal Lobe Of The Human Ubr5
Hect Domain
Length = 118
Score = 33.9 bits (76), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 10/89 (11%)
Query: 934 FWEVLKSFSLENQKKFLKFVTGCSRGPLL--GFKYLEPLFCIQRAAGSASEEALDRLPTS 991
FW +++ S+ ++ + F T P GF+ + P I+ LPT+
Sbjct: 33 FWSIVEKMSMTERQDLVYFWTSSPSLPASEEGFQPM-PSITIRPPDD-------QHLPTA 84
Query: 992 ATCMNLLKLPPYRSKEQMSTKLLYAINAE 1020
TC++ L +P Y SK+ + KLL AI +
Sbjct: 85 NTCISRLYVPLYSSKQILKQKLLLAIKTK 113
>pdb|3AL3|A Chain A, Crystal Structure Of Topbp1 Brct78-Bach1 Peptide Complex
Length = 235
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 35/85 (41%), Gaps = 15/85 (17%)
Query: 84 VNRQCFGPQSAXXXXXXXXXNARNVSDISV--------LVETCRLMKHFVQE------SG 129
+ +QCF P N + ++ ++ +E CR HFVQE S
Sbjct: 37 IEKQCFDPTCTHIVVGHPLRNEKYLASVAAGKWVLHRSYLEACRTAGHFVQEEDYEWGSS 96
Query: 130 DVVGLFAGIDYSSKR-ALVDFRVKK 153
++ + GI+ +R AL R +K
Sbjct: 97 SILDVLTGINVQQRRLALAAMRWRK 121
>pdb|3AL2|A Chain A, Crystal Structure Of Topbp1 Brct78
Length = 235
Score = 31.6 bits (70), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 35/85 (41%), Gaps = 15/85 (17%)
Query: 84 VNRQCFGPQSAXXXXXXXXXNARNVSDISV--------LVETCRLMKHFVQE------SG 129
+ +QCF P N + ++ ++ +E CR HFVQE S
Sbjct: 37 IEKQCFDPTCTHIVVGHPLRNEKYLASVAAGKWVLHRSYLEACRTAGHFVQEEDYEWGSS 96
Query: 130 DVVGLFAGIDYSSKR-ALVDFRVKK 153
++ + GI+ +R AL R +K
Sbjct: 97 SILDVLTGINVQQRRLALAAXRWRK 121
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.138 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,408,280
Number of Sequences: 62578
Number of extensions: 1123406
Number of successful extensions: 2295
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 2237
Number of HSP's gapped (non-prelim): 18
length of query: 1026
length of database: 14,973,337
effective HSP length: 109
effective length of query: 917
effective length of database: 8,152,335
effective search space: 7475691195
effective search space used: 7475691195
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 56 (26.2 bits)