Query 001698
Match_columns 1026
No_of_seqs 402 out of 1535
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 07:11:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001698.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001698hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4427 E3 ubiquitin protein l 100.0 3E-175 6E-180 1471.2 59.7 957 18-1026 2-1096(1096)
2 KOG0942 E3 ubiquitin protein l 100.0 6E-157 1E-161 1359.0 67.4 941 17-1026 1-1001(1001)
3 KOG0941 E3 ubiquitin protein l 100.0 6.5E-90 1.4E-94 799.9 31.1 431 578-1025 400-849 (850)
4 COG5021 HUL4 Ubiquitin-protein 100.0 2.8E-87 6.1E-92 809.6 34.1 352 663-1026 514-872 (872)
5 cd00078 HECTc HECT domain; C-t 100.0 7.5E-82 1.6E-86 720.2 32.4 348 665-1024 2-352 (352)
6 smart00119 HECTc Domain Homolo 100.0 1E-78 2.2E-83 687.3 30.9 331 685-1026 3-336 (336)
7 KOG0939 E3 ubiquitin-protein l 100.0 3.3E-78 7.1E-83 689.1 29.2 381 625-1026 331-720 (720)
8 KOG0170 E3 ubiquitin protein l 100.0 1.3E-73 2.8E-78 628.1 25.3 392 622-1026 165-621 (621)
9 PF00632 HECT: HECT-domain (ub 100.0 1.1E-64 2.5E-69 572.2 20.5 304 719-1026 1-317 (317)
10 KOG0940 Ubiquitin protein liga 100.0 2.2E-50 4.8E-55 450.0 12.1 338 662-1018 15-358 (358)
11 KOG0943 Predicted ubiquitin-pr 100.0 3.1E-37 6.7E-42 358.1 23.1 263 752-1023 2739-3014(3015)
12 PF00612 IQ: IQ calmodulin-bin 97.6 6.3E-05 1.4E-09 49.7 3.2 21 46-66 1-21 (21)
13 smart00015 IQ Short calmodulin 97.0 0.0005 1.1E-08 47.9 2.5 22 45-66 2-23 (26)
14 KOG0377 Protein serine/threoni 76.3 2.8 6.1E-05 48.2 4.1 23 46-68 17-39 (631)
15 PTZ00014 myosin-A; Provisional 72.1 6.3 0.00014 50.5 6.3 35 35-69 766-800 (821)
16 KOG1419 Voltage-gated K+ chann 64.0 6 0.00013 47.1 3.4 34 28-61 322-355 (654)
17 PTZ00014 myosin-A; Provisional 62.5 11 0.00024 48.3 5.7 27 39-65 793-819 (821)
18 KOG0164 Myosin class I heavy c 51.7 24 0.00052 43.4 5.6 27 44-70 694-720 (1001)
19 PF08763 Ca_chan_IQ: Voltage g 50.3 16 0.00035 27.4 2.5 22 47-68 10-31 (35)
20 KOG0163 Myosin class VI heavy 44.7 17 0.00037 44.7 3.0 28 43-70 810-837 (1259)
21 KOG0160 Myosin class V heavy c 39.6 46 0.001 42.6 5.8 36 28-63 678-713 (862)
22 KOG0160 Myosin class V heavy c 33.4 58 0.0013 41.8 5.3 30 45-74 717-746 (862)
23 PF03378 CAS_CSE1: CAS/CSE pro 23.4 1.3E+03 0.029 27.6 15.9 173 151-362 24-213 (435)
24 PF08513 LisH: LisH; InterPro 22.4 1E+02 0.0022 21.7 2.8 21 203-223 5-25 (27)
25 KOG0162 Myosin class I heavy c 20.9 1.2E+02 0.0026 37.8 4.6 30 43-73 693-722 (1106)
No 1
>KOG4427 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.6e-175 Score=1471.18 Aligned_cols=957 Identities=31% Similarity=0.508 Sum_probs=802.8
Q ss_pred CCCCcccHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccc---cCCchhh
Q 001698 18 RSSKERDRQKLLEQTRLERNRRLYLRRQNHAAIKIQKCFRGKKAMEIEHSKVREQFFATYGRHIQNVNRQ---CFGPQSA 94 (1026)
Q Consensus 18 ~s~~e~~r~~lL~qar~eRe~R~~~Rrr~~aAi~IQ~~~Rg~~~r~~~~~~~R~efd~~~~~~~~~~~~~---~~~~~~~ 94 (1026)
.+..+++|++||+|+++|||+|+.+|||++||++||++||||++||+++.+++++||.++..+....++. ...|.-+
T Consensus 2 ~~~~q~sra~fl~k~~qeREer~~qrrr~~aa~~iq~~lrsyl~Rkk~~~~I~~e~d~~f~~d~~d~~~~~erv~~~~l~ 81 (1096)
T KOG4427|consen 2 FSSGQISRAAFLAKVSQEREERSYQRRREAAALFIQRVLRSYLVRKKAQIEIQEEFDNLFSCDSVDLTKVLERVARPFLP 81 (1096)
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHhhhHHH
Confidence 3444578999999999999999999999999999999999999999999999999999998876432221 1222335
Q ss_pred hhhhheEEEeccccccHHHHHHHHHHHHHHhhhcCCccccccccccccchhh-HHHHHHHHHHHHHHHHHhhhhhhcccc
Q 001698 95 FFRQLFFFFNARNVSDISVLVETCRLMKHFVQESGDVVGLFAGIDYSSKRAL-VDFRVKKFAFACIQAVHQNRKELKDQL 173 (1026)
Q Consensus 95 ~lR~llFf~~~~~~~D~~rL~~lc~~ll~s~~~~~~~~~~~~~~~~~~~~~~-~~~qiKkll~lC~~~L~~~~~~~~~~~ 173 (1026)
++|.+++.++.++ .|.+||+++||+|+.+|+++++.+.+||++++++|+.. |+.|||+++++|++.|.+++++...+.
T Consensus 82 var~ll~q~r~ie-~~~e~~~~iCr~il~smds~n~~~~sfvsl~l~ke~sk~w~~qik~ils~c~~lL~eln~Er~ad~ 160 (1096)
T KOG4427|consen 82 VARSLLVQHRKIE-AREERLEQICRKILLSMDSENDQKYSFVSLALGKEDSKTWICQIKRILSLCSFLLTELNPERIADS 160 (1096)
T ss_pred HHHHHHHHHHHHH-hHHHHHHHHHHHHHHhhcCCCCcceeeeeehhcccchHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 7899999888775 44899999999999999999999999999999999765 599999999999999998666433322
Q ss_pred cCCCCCCCCchHHHHHHHHHhhcCCchh------------------hHHHHHHHHhcchHHHHHHHHHhcCCCccccccc
Q 001698 174 FVTPEESNTPPTLLLEAVVFLIDSRLPW------------------TCKVVSYLLERNVFTLLRELIVTGKESMEIHSSY 235 (1026)
Q Consensus 174 ~~~~~~~~~~~~~~l~~lv~l~~~~~~w------------------~~~i~~yL~q~g~y~~Lr~ll~~~~~~~~~~~~~ 235 (1026)
. ...++|+++++|||+++ | |++||||++|+|||+.+|.+|.++..+.++....
T Consensus 161 ~--------~~alll~~livfTdpks-Wkilrn~n~e~lqtamn~ic~~i~gh~~q~~~Ys~mr~~l~~~t~~~~~~l~~ 231 (1096)
T KOG4427|consen 161 I--------VNALLLHILIVFTDPKS-WKILRNENFEDLQTAMNIICQNIMGHLCQHGFYSAMRRYLKRGTKRTDPRLVI 231 (1096)
T ss_pred H--------HHHHHHHeeeEEeCCcc-eeehhccchhhhHHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCCCcceee
Confidence 2 46799999999999999 9 4889999999999999999999999877763333
Q ss_pred CCcchHHHHHHhhhccccCCCcccCCCCCcc------chhhhhcccchhhhhhhh----HHHHHhhcCCchhhHHHHHHH
Q 001698 236 GRISSLERVLTLIIPHIGQKPCICPNIDPRW------SFFSQILTIPFLWHLFPY----IKEVFATGRTSQHYIHQMALC 305 (1026)
Q Consensus 236 ~~~~~l~~ll~l~~~~~~~~~~~~~~~~~~~------~f~~~IlsiP~l~~~~p~----~~~~~~~~~l~~~~~~~~~~~ 305 (1026)
. ++.+ +|+. +..|..++++ .|.++|||||+|..|+|. ....+.++.+..+.++ +
T Consensus 232 ~---Tl~a-------~~sl--~~rpvk~~nfsd~l~~~fv~~IltvPaLv~hL~~~~~q~le~~ss~~l~~K~l~----~ 295 (1096)
T KOG4427|consen 232 T---TLAA-------TFSL--RLRPVKQPNFSDNLVEEFVSLILTVPALVCHLPSALPQALEHLSSLMLLDKILN----I 295 (1096)
T ss_pred e---ehhh-------hhhh--ccccccCCchHHHHHHHHHHHHhchhHHHHhcchhhHHHHHHHHHHHHHHHHHH----H
Confidence 2 2222 2222 2345555554 599999999999888774 4777777888888876 4
Q ss_pred HhhhcccCCccccCCcchHHHHHHHHHHhhhhhcCCCCCcccchhhHHHHHHHHHhhCCCcccC--Cccc---------C
Q 001698 306 VQNHANVLPHEVSMELPGYACLLGNILETAGVALSQPDCSFEMGVDLAAITTFLLKALPPIKSS--RESS---------M 374 (1026)
Q Consensus 306 l~~~~~~~~~~~s~~~p~~~~lL~Nl~~l~~~~l~~~~~~~~~~~~~v~v~~~lL~~l~~~~~~--~~s~---------~ 374 (1026)
+.+......-+.+.++|+.+|+|||++++++. ++.+...+..-+++..++..|.+|-.++.+ ++++ -
T Consensus 296 l~d~~~~ee~~tsme~~~~l~llgNiv~la~i--s~~~~e~~~~~~f~~~~~~sl~~~~e~tv~~~tk~~l~~wH~vlg~ 373 (1096)
T KOG4427|consen 296 LRDMENSEEQSTSMEGPSVLWLLGNIVHLATI--SETDLEDELESNFYVLYTHSLVTLAENTVSQVTKVGLTDWHPVLGW 373 (1096)
T ss_pred HHhhHhHHHhhcCCcccHhHHHHhhhheeeec--CcccccccccccchhhhHHHHHHHHHHHhhcccccceeeeehhhcc
Confidence 44443333235578889999999999999982 433333333335777888888888555433 2222 1
Q ss_pred CCCCCcccCCCCccchhhHhHHHHHHHHhhHHHHHHHHHHHhhhh----------------------------cccCCC-
Q 001698 375 VSDDDMTAGDEVMEPVINRDLEKQITSAIDSRFLLQLTNVLFSGF----------------------------HLLRGP- 425 (1026)
Q Consensus 375 ~~~ddd~~~~~~~~~~~~~~l~~ql~~~~~~~~l~~l~~~l~~~v----------------------------~~~~~~- 425 (1026)
.+...|.+.++.|. .+++|+.-+|+.+..+-+...+.... ++....
T Consensus 374 ~s~~~ek~~n~~i~-----~v~~q~~mlw~~~likll~~dile~~~las~~~~~~sk~s~~~~l~Is~l~sr~lrk~~~~ 448 (1096)
T KOG4427|consen 374 TSNETEKGNNVKIS-----LVEKQLPMLWQWRLIKLLFGDILEIRVLASKDASTSSKKSPETLLDISRLLSRALRKSCVM 448 (1096)
T ss_pred ccCCCCCccchhHH-----HHHHHHHHHhhhhHHHHHhhhHHHhhhhccccccccCCCCCcchhHHHHHHHHHHHHhccc
Confidence 45666666666665 89999999999744444433322211 110000
Q ss_pred ---------------CCCCCCchhhhHHHHHHHHHHHhhhhhhh--HHHHHHhhhhhhHHHHHHHHHHHhhccccCCC--
Q 001698 426 ---------------HDEGPGDKEVAAVGAACAFLHVAFNTLPL--ECIMTVLAYRTELVQLLWHYMKRCHEIRKWPF-- 486 (1026)
Q Consensus 426 ---------------~~~~~~~~~~~~v~~~c~~~~~~~~~~~~--~~il~~Laf~~~ll~~lW~~i~~~~~~~~~~~-- 486 (1026)
++--.+++++..++.+|.+|+++++|+.+ ..++++|+|.+.+++++|.+|+..+++.+-.+
T Consensus 449 ~~~l~~v~ss~~~~~~~k~~s~~~v~lv~~iC~~y~aslnTl~~mr~~iltgl~~~dnll~~lW~~i~e~G~~~G~~~gs 528 (1096)
T KOG4427|consen 449 GPVLGPVPSSNMLSFCPKWNSSAEVLLVENICTAYDASLNTLWQMRLPILTGLCYLDNLLVNLWVNILELGPSPGPQPGS 528 (1096)
T ss_pred CCccCCCccchhhhccccccCcccceehhhhhhHHHhhhhhHHHhhhHHhhcchhhhhhHHHHHHHHHHhCCCCCCCCCc
Confidence 01113678899999999999999999875 57999999999999999999999998877221
Q ss_pred ----------CCC---CCCC---CCccchhhhhhhhh--hhhcccchhhhhccCCCCCHHHHHHHHHHHHHHHHHHhhcC
Q 001698 487 ----------LPY---LSGD---APGWLLPLAVFCPV--HMLTIVDNEEFYEQEKPLSLKDIRHLIVILREALWHLLWLN 548 (1026)
Q Consensus 487 ----------l~~---~~~d---~~~~llpl~lfc~l--h~l~ilddeef~~~~~p~~l~el~~l~~~Lk~~~~~~l~~~ 548 (1026)
++. +.++ +....++|.|||++ |+++|+||+|||+.|.||+++++..|+.|||+++|+++|..
T Consensus 529 ~~~~~~~k~~~ev~~~l~s~~~~sk~~tamL~LFcdc~ahlitILDd~e~yekq~pF~lee~~~i~s~lN~~vyk~i~~g 608 (1096)
T KOG4427|consen 529 GQVNESTKDVLEVETLLGSPTGISKPVTAMLMLFCDCYAHLITILDDIEFYEKQVPFKLEELVRIASFLNTFVYKGIWDG 608 (1096)
T ss_pred cccchhHHHHHhHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHcc
Confidence 111 1111 22367789999999 99999999999999999999999999999999999999974
Q ss_pred CCCCCCCCCccCCCCCCCCCCchHHHHhhhHHHHHHHHHHHhHhhccCcCCCCCCCCCCCcch-hhhhhhhccccchhHh
Q 001698 549 PTSHPNVGKSVSSPPPANKMLPAEAIQHRVSTVASEVLSQLQDWNNRREFVPPSDFHADGVND-FFISQATIDGTRANEI 627 (1026)
Q Consensus 549 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~r~~f~p~~~f~~~~~~~-~~~~~~~~~~~~~~~i 627 (1026)
....+ + + ....++.+++++|..||+|||||+|+|+++|+++++.. .|....+....++..+
T Consensus 609 ~v~ea-------------k----~-~t~~lF~S~h~~l~vLYeRDcRr~Fta~d~WL~pevkPs~f~~e~ek~~~~a~ll 670 (1096)
T KOG4427|consen 609 TVPEA-------------K----Q-LTTGLFDSAHRLLHVLYERDCRRPFTASDHWLIPEVKPSAFAAELEKVLPTADLL 670 (1096)
T ss_pred cchhh-------------h----h-HHHHHHHHHHHHHHHHHHhccCCCCCcchhhcCCCCChhHHHHHHHhhcccceeE
Confidence 33211 1 1 11228899999999999999999999999999988754 3444444455667788
Q ss_pred hhcCCcccchhchHHHHHHHHHHHHhhcCCC----CCccc-eeEEEcCCchHHHHHHHHhcCCccccCCcEEEEEEeccC
Q 001698 628 LKQAPFLVPFTSRAKIFQSQLASVRQRHGSH----GVFTR-SRFRIRRDHILEDAYSQMSTMSEEDLRGAIRVTFVNELG 702 (1026)
Q Consensus 628 l~~~Pf~~pf~~rv~~f~~~~~~~~~~~~~~----~~~~~-~~i~VrR~~ileda~~~l~~~~~~~lk~~l~V~F~~e~G 702 (1026)
+..+|+++|+++||.+||.++.+++...+.. ....+ ..|+|||++|+||+|+||++.+...+|+.|+|+|+||+|
T Consensus 671 l~~mpHviP~edRv~lFR~fVqkdKa~~~lv~ts~a~p~~~t~IvvrR~rivEDGf~qL~~l~~~alKs~IrVkFVNeqG 750 (1096)
T KOG4427|consen 671 LTKMPHVIPHEDRVLLFREFVQKDKASRGLVETSDASPARSTEIVVRRGRIVEDGFQQLNSLGSPALKSVIRVKFVNEQG 750 (1096)
T ss_pred eccCCcccChHHHHHHHHHHHhhhHHhhcccccccCCccceeEEEEEcccchhhHHHHHHhccchhhhceEEEEEecccC
Confidence 9999999999999999999998887654421 12222 589999999999999999999988999999999999999
Q ss_pred cccccccCCCccHHHHHHHHHHhhcccCCCceecC-CCceeeCCCCCcchhhHHHHHHHHHHHHHHHHHcCCcccccCcH
Q 001698 703 VEEAGIDGGGIFKDFMENITRAAFDVQYGLFKETS-DHLLYPNPGSGMIHEQHLQFFHFLGILLAKAMFEGILVDIPFAT 781 (1026)
Q Consensus 703 ~~E~giD~GG~~rEff~~l~~e~~~p~~glF~~~~-~~~l~pnp~s~~~~~~~l~~f~flG~llg~Al~~~~~l~l~f~~ 781 (1026)
++|||||.|||+|||++++.+.+|||+++||..|+ |+.+||+|.|+ .+++|+++|+|+||++|||+|+|+++|+||++
T Consensus 751 l~EAGiDqdGvfKEFLeeiiKkvFdp~lnLFstTs~d~~LyPSPts~-~~en~lqlfeFvGrmlGKAvYEGIvvDv~fa~ 829 (1096)
T KOG4427|consen 751 LDEAGIDQDGVFKEFLEEIIKKVFDPELNLFSTTSTDRRLYPSPTSY-HHENHLQLFEFVGRMLGKAVYEGIVVDVPFAS 829 (1096)
T ss_pred CcccccCccchHHHHHHHHHHHHhcccccccccCCCCceecCCchhh-hhhchhHHHHHHHHHHHHHHhcceEEecccHH
Confidence 99999999999999999999999999999999998 99999999996 68999999999999999999999999999999
Q ss_pred HHHHhhhccCC--CCCCCCCCCHHhhhhhHHhhcccccccccceeEEEEeccCCcceeeeccCCCcccccChhhHHHHHH
Q 001698 782 FFLSKLKQKYN--YLNDLPSLDPELYRHLIFLKHYEADISELELYFVILNNEYGEQTEEELLPGGKNIRVTNENVITFIH 859 (1026)
Q Consensus 782 ~f~k~Ll~~~~--~l~DL~~~Dp~l~~sL~~l~~~~~dv~~l~L~F~~~~~~~g~~~~~eL~p~G~~i~VT~~Nk~eYV~ 859 (1026)
+|+.+|+|... .+|+|.++|||+||||.++|+|+||+.||+|+|+++++..|+..++||+|||+.|+||++||.+|||
T Consensus 830 vflsqlLG~~~~s~~DELs~LDpElYrnLtfvKhYdgd~~dL~LtfSvdedfmGkis~~eL~PgGkt~sVtneNKi~YIH 909 (1096)
T KOG4427|consen 830 VFLSQLLGRHSLSFIDELSSLDPELYRNLTFVKHYDGDLKDLCLTFSVDEDFMGKISTIELKPGGKTISVTNENKIQYIH 909 (1096)
T ss_pred HHHHHHhcccchhhhhhccccCHHHHhhhhHHHhhcccHhhheeeeEechhhccceeEEEeccCCcceeccccchHHHHH
Confidence 99999999876 7999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhHhchhHHHHHHHHHHhhccccchhHHhhccHHHHHHhHcCCCCCCCHHHHhhcccccCccCCCchHHHHHHHHHh
Q 001698 860 LVSNHRLNFQIRQQSSHFLRGFQQLIQKDWIDMFNEHELQLLISGSLDSLDFDDLRQNTNYVGGYHSEHYVIEMFWEVLK 939 (1026)
Q Consensus 860 ~~~~~~l~~~i~~q~~af~~Gf~~vi~~~~l~~F~~~EL~~li~G~~~~id~~dl~~~t~y~~gy~~~~~~I~~FW~vl~ 939 (1026)
.||+|++|++|++|+.||.+||+++|.++||++|+|.|||.||+|...+||++||++||+|.|||+.+|++|+|||+++.
T Consensus 910 ~MA~~rmnrqi~eqt~Af~rG~rsii~P~WlslFs~~elq~LiSG~nsdiDl~DLkrnt~Y~GGfh~shrvIkwlWdIl~ 989 (1096)
T KOG4427|consen 910 AMAHFRMNRQIVEQTNAFYRGFRSIISPEWLSLFSPPELQRLISGDNSDIDLDDLKRNTKYYGGFHDSHRVIKWLWDILA 989 (1096)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHccCcHHHHHHhcCCCCCCCHHHHHhcCEeecccCCcchhHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred c-CCHHHHhhcceeecCCCCCCCCCcccCCCceeEeecCCCCC-------------------CcCCCCCceeccccCeec
Q 001698 940 S-FSLENQKKFLKFVTGCSRGPLLGFKYLEPLFCIQRAAGSAS-------------------EEALDRLPTSATCMNLLK 999 (1026)
Q Consensus 940 ~-~s~eer~~fL~FvTG~~r~P~~Gf~~L~p~f~i~~~~~~~~-------------------~~~~~~LP~A~TCfn~L~ 999 (1026)
. |++|||+.||||||+|||+|+.||++|+|||.|+++..+++ +++.+|||||+||||+||
T Consensus 990 ~dFt~eERklfLKFVTSCSrpPlLGFayLePpFsIrCVeVSdDqd~gdtiGSVvRGFfaiRKg~~~~RLPTaSTCfNlLK 1069 (1096)
T KOG4427|consen 990 GDFTPEERKLFLKFVTSCSRPPLLGFAYLEPPFSIRCVEVSDDQDTGDTIGSVVRGFFAIRKGQPVERLPTASTCFNLLK 1069 (1096)
T ss_pred ccCChHHHHHHHHHHhhcCCCccccccccCCCceEEEEEecCcccchhhHhHHHHhhhhhhcCCccccCCchhhHHHhhh
Confidence 5 99999999999999999999999999999999997653322 367899999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCCccCC
Q 001698 1000 LPPYRSKEQMSTKLLYAINAEAGFDLS 1026 (1026)
Q Consensus 1000 LP~Yss~e~l~ekL~~AI~~~~GF~Ls 1026 (1026)
||.|+.+.+|||||+|||++++||+||
T Consensus 1070 LPnY~kkStlreKLrYAIssntGFELS 1096 (1096)
T KOG4427|consen 1070 LPNYKKKSTLREKLRYAISSNTGFELS 1096 (1096)
T ss_pred CCCcchhHHHHHHHHHHhhcCCCcccC
Confidence 999999999999999999999999998
No 2
>KOG0942 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.6e-157 Score=1359.04 Aligned_cols=941 Identities=40% Similarity=0.604 Sum_probs=754.6
Q ss_pred CCCCCcccHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCchhhhh
Q 001698 17 GRSSKERDRQKLLEQTRLERNRRLYLRRQNHAAIKIQKCFRGKKAMEIEHSKVREQFFATYGRHIQNVNRQCFGPQSAFF 96 (1026)
Q Consensus 17 g~s~~e~~r~~lL~qar~eRe~R~~~Rrr~~aAi~IQ~~~Rg~~~r~~~~~~~R~efd~~~~~~~~~~~~~~~~~~~~~l 96 (1026)
|+|+++ +|+++|.+|++||.+||++|||+++|+++|++||||++|++++...|++||.....+.++ .....++
T Consensus 1 g~~~~~-er~~~l~r~~~er~kRee~rk~e~~av~vQs~~Rg~~~r~~~~~~~R~~fd~~~~~~~~~------e~~~~~~ 73 (1001)
T KOG0942|consen 1 GASSLN-ERDNLLRRAAEERHKREEERKQEKNAVKVQSFWRGFRVRHNQKLLFREEFDAVSTRSRGG------EELTKLA 73 (1001)
T ss_pred CCcchh-hHHHHHHHHHHHHHhhHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCc------hhHHHHH
Confidence 788885 899999999999999999999999999999999999999999999999999988766432 2245689
Q ss_pred hhheEEEeccccccHHHHHHHHHHHHHHhhhcCCccccccccccccchhhHHHHHHHHHHHHHHHHHhhhhhhcc-cccC
Q 001698 97 RQLFFFFNARNVSDISVLVETCRLMKHFVQESGDVVGLFAGIDYSSKRALVDFRVKKFAFACIQAVHQNRKELKD-QLFV 175 (1026)
Q Consensus 97 R~llFf~~~~~~~D~~rL~~lc~~ll~s~~~~~~~~~~~~~~~~~~~~~~~~~qiKkll~lC~~~L~~~~~~~~~-~~~~ 175 (1026)
|+|+|||... +|.+||+|+|+.|++-.. ..+.. + ..+|..|.|+++..|++ +.||+.+.+. +..
T Consensus 74 ~~L~~Fy~~~--~D~~rli~~~~nl~~~~~---~~i~~------s--~~~~~~~~k~l~~~c~~-~l~n~~~d~l~~~~- 138 (1001)
T KOG0942|consen 74 RLLVFFYETN--KDSERLIMVLQNLLKQKT---RLIEF------S--KRTRLTQLKLLLRKCQR-LLQNRNDDTLFQAI- 138 (1001)
T ss_pred HHHHHHhhcc--cccHHHHHHHHHHHHHHH---Hhhhh------h--ccchHHHHHHHHHHHHH-HHHhhhhhhHHHHH-
Confidence 9999999766 788999999998887222 22222 1 26788999999999998 6777765544 222
Q ss_pred CCCCCCCchHHHHHHHHHhh-------cC--CchhhHHHHHHHHhcchHHHHHHHHHhcCCCcccccccCCcchHHHHHH
Q 001698 176 TPEESNTPPTLLLEAVVFLI-------DS--RLPWTCKVVSYLLERNVFTLLRELIVTGKESMEIHSSYGRISSLERVLT 246 (1026)
Q Consensus 176 ~~~~~~~~~~~~l~~lv~l~-------~~--~~~w~~~i~~yL~q~g~y~~Lr~ll~~~~~~~~~~~~~~~~~~l~~ll~ 246 (1026)
| .++++.+++.. |+ ..+|.+.|++|+..++||.++|.+++...++....+..+..+.++.++.
T Consensus 139 -------p-~~ll~~~~~~~~~~~~~~d~~~~~~~v~~i~ay~~k~~y~~~lr~l~~~~~~s~~~~s~~~n~~~~e~ll~ 210 (1001)
T KOG0942|consen 139 -------P-RRLLESFTSHSSLVRLLKDLGLFNQEVHLILAYLGKRTYYTSLRALLNSKKLSLLGRSFETNVLPLESLLS 210 (1001)
T ss_pred -------H-HHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhccccchhhHHHHhhhccccccccccCCCCChHHHHHH
Confidence 3 56666666533 33 6678999999999999999999999998887777788888899999999
Q ss_pred hhhccccCCCcccCCCCCccchhhhhcccchhhhhhhhHHHHHhhcCCchhhHHHHHHHHhhhcccCCccccCCcchHHH
Q 001698 247 LIIPHIGQKPCICPNIDPRWSFFSQILTIPFLWHLFPYIKEVFATGRTSQHYIHQMALCVQNHANVLPHEVSMELPGYAC 326 (1026)
Q Consensus 247 l~~~~~~~~~~~~~~~~~~~~f~~~IlsiP~l~~~~p~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~s~~~p~~~~ 326 (1026)
++..+....++.|+.++..++|..+|++.|.++..++.. ..+.+ +.. .++..++.+.+
T Consensus 211 lvl~~~~~~k~~c~~~d~~~sf~~~~la~d~~~~~~~~~--------~~~~~-----------~~~---~~~~~~~~~~~ 268 (1001)
T KOG0942|consen 211 LVLLPLRLAKTACTNGDLNFSFTILILAKDHISPIFCPF--------FLPLF-----------AAM---KTSDPLELWEV 268 (1001)
T ss_pred HhccccchhccccccccccccchHHHHhcccchhhcccc--------chhHH-----------hhh---hccccchHHHH
Confidence 999988888889999999999999999999998887521 11111 111 33456667778
Q ss_pred HHHHHHHhhhhh---cCCCCCcccchhhH-HHHHHHHHhhCCCcccCC-----cccCCCCCCcccCCCCccchhhHhHHH
Q 001698 327 LLGNILETAGVA---LSQPDCSFEMGVDL-AAITTFLLKALPPIKSSR-----ESSMVSDDDMTAGDEVMEPVINRDLEK 397 (1026)
Q Consensus 327 lL~Nl~~l~~~~---l~~~~~~~~~~~~~-v~v~~~lL~~l~~~~~~~-----~s~~~~~ddd~~~~~~~~~~~~~~l~~ 397 (1026)
++++.++.+... ++++.+.....-.. +...+.+.+-||+..... .+..+++++..+.+..++ ...+.-..
T Consensus 269 ~~~~al~s~~~i~s~~~~~~l~~l~q~~~~~~y~~~l~~~L~pv~~~s~~~r~~~~~dd~~es~d~~~~v~-n~l~~~~~ 347 (1001)
T KOG0942|consen 269 ALESALESAGSIKSGVSQNVLVLLHQSYLLLQYFNFLAEFLPPVSHESAIMRHLSVKDDDEESDDEDKSVP-NHLKPYCE 347 (1001)
T ss_pred HHHHHHhhhcchhhcccchhhhhhhhhhHHHHHHHHHHHHcCCcCCCCcchhhccccchhhhccccchhhh-hhchHHHH
Confidence 887777554421 12322222221122 223444444445221111 111111111111122111 11112333
Q ss_pred HHHHHhhHHHH--------HHHHHHHhhhhcccCCCCCCCCCchhhhHHHHHHHHHHHh----hhhhhhHHHHHHhhhhh
Q 001698 398 QITSAIDSRFL--------LQLTNVLFSGFHLLRGPHDEGPGDKEVAAVGAACAFLHVA----FNTLPLECIMTVLAYRT 465 (1026)
Q Consensus 398 ql~~~~~~~~l--------~~l~~~l~~~v~~~~~~~~~~~~~~~~~~v~~~c~~~~~~----~~~~~~~~il~~Laf~~ 465 (1026)
|.......+.. ++.|+.+++..+. +.+...+++++|.+||++ .+.+|..++++.+||.+
T Consensus 348 ~~~~~~~~r~~~cl~~~~~~~qv~~iis~~~~---------~~~~~~~i~~~~~~~~sl~~~~~~~~p~~rll~~laf~~ 418 (1001)
T KOG0942|consen 348 QMSASNSSRRAACLYANLEKRQVDEIISSTDY---------DKAFEDLIANLNTFCHSLYAQIAKLVPLGRLLYILAFSP 418 (1001)
T ss_pred hhhhhHHHHHHHHHHhhhhHHHHHHHHHHhcc---------hhhHHHHHHHHHHHHHHHHHHHHHhCchhhhhHHHhhhH
Confidence 33322333222 3344444443332 333344566666444444 56788999999999999
Q ss_pred hHHHHHHHH--HHHhhcccc-CCCCC----CCCCCCC------ccchhhhhhhhh--hhhcccchhhhhccCCCCCHHHH
Q 001698 466 ELVQLLWHY--MKRCHEIRK-WPFLP----YLSGDAP------GWLLPLAVFCPV--HMLTIVDNEEFYEQEKPLSLKDI 530 (1026)
Q Consensus 466 ~ll~~lW~~--i~~~~~~~~-~~~l~----~~~~d~~------~~llpl~lfc~l--h~l~ilddeef~~~~~p~~l~el 530 (1026)
+++..+|.. +.++..... +.++| .+..+++ +.++.+.+||.+ |+|.++||.|||+..++.....+
T Consensus 419 ~~~~~~~f~~~~~~~s~~~~~~s~vp~L~~~~~~~~~~~~~~~~~~~l~~~f~~~f~~~L~s~~d~Ef~e~~~~~~~~~~ 498 (1001)
T KOG0942|consen 419 KLNAELWFTNCLARRSESMADGSSVPQLIFISFGVTPEFLLDDRIIPLLLLFSTMFRRMLYSGHDKEFMEDPKTLWKPVM 498 (1001)
T ss_pred HHHHHHHHHHHHHHHHhhccccccchhHHhhccCCchhhccccchhhHHHHHHHHHHhhhhcccHHHHhcCccccchhhH
Confidence 999999954 888877765 33444 2223322 233345678998 99999999999998777766533
Q ss_pred H-HHHHHHHHHHHHHhhcCCCCCCCC-CCccCCCCCCCCCCc--hHHHHhhhHHHHHHHHHHHhHhhccCcCCCC---CC
Q 001698 531 R-HLIVILREALWHLLWLNPTSHPNV-GKSVSSPPPANKMLP--AEAIQHRVSTVASEVLSQLQDWNNRREFVPP---SD 603 (1026)
Q Consensus 531 ~-~l~~~Lk~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ll~~l~~~~~r~~f~p~---~~ 603 (1026)
. .++.++|.+.+..+|..+...++. .+.++.++ .+.++ .+.+.+....+..+++.++++||+|..|+|+ ..
T Consensus 499 m~e~i~~lk~l~d~~l~~~~la~~~t~~~~~g~~~--~r~~~~~~~~~~n~~~~v~~e~l~~~~~rd~r~~f~~~~e~~d 576 (1001)
T KOG0942|consen 499 MPELILLLKYLKDILLWLVPLAFPNTREKVVGITE--SRRMPLRQRRRWNGRLQVVRELLTELSERDNRKEFCPSKERPD 576 (1001)
T ss_pred HHHHHHHHHHHHHHHhcccccccccccccccCcch--hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccccc
Confidence 3 677788888888899877666555 33344332 23444 3333455778999999999999999999987 13
Q ss_pred CCCCCcchhhhhhhhccccchhHhhhcCCcccchhchHHHHHHHHHHHHhhcCCCCCccce---eEEEcCCchHHHHHHH
Q 001698 604 FHADGVNDFFISQATIDGTRANEILKQAPFLVPFTSRAKIFQSQLASVRQRHGSHGVFTRS---RFRIRRDHILEDAYSQ 680 (1026)
Q Consensus 604 f~~~~~~~~~~~~~~~~~~~~~~il~~~Pf~~pf~~rv~~f~~~~~~~~~~~~~~~~~~~~---~i~VrR~~ileda~~~ 680 (1026)
.-++..++.+.........|+..||.++||++||+.||++|+++++.+|++.+..++|.+. .++|||++|+||||++
T Consensus 577 l~sd~~~e~~~~l~~~lr~R~l~IL~e~PF~vPF~~RVklfq~lla~dKq~~~~~~~F~~g~s~~~tIRRd~iyeDAfd~ 656 (1001)
T KOG0942|consen 577 LKSDDENELFNPLPSFLRFRALCILKEIPFFVPFEERVKLFQRLLALDKQRHGGDGPFGMGFSPSATIRRDHIYEDAFDA 656 (1001)
T ss_pred ccccchHHhhcchHhhhhhHHHHHHHcCCeeechHHHHHHHHHHHHHHHHhhcCCCCccCCCCccEEEehhhhHHHHHHh
Confidence 4444555555555555567899999999999999999999999999999999888788766 8999999999999999
Q ss_pred HhcCCccccCCcEEEEEEeccCcccccccCCCccHHHHHHHHHHhhcccCCCceecCCCceeeCCCCCcchhh-HHHHHH
Q 001698 681 MSTMSEEDLRGAIRVTFVNELGVEEAGIDGGGIFKDFMENITRAAFDVQYGLFKETSDHLLYPNPGSGMIHEQ-HLQFFH 759 (1026)
Q Consensus 681 l~~~~~~~lk~~l~V~F~~e~G~~E~giD~GG~~rEff~~l~~e~~~p~~glF~~~~~~~l~pnp~s~~~~~~-~l~~f~ 759 (1026)
++..+..++|..+||+|+||+|++|+||||||++|||++.+++++|||++|+|++|.++.+||||++.+..+. ++++|+
T Consensus 657 f~p~~e~dlk~~iRVtfVne~G~~EaGIDGGGIfkEFLtel~ktaFdpn~GlF~~T~~~lLYPNp~~~~l~~~~~lkhy~ 736 (1001)
T KOG0942|consen 657 FSPKGEPDLKSSIRVTFVNEHGVDEAGIDGGGIFKEFLTELLKTAFDPNYGLFKETEDHLLYPNPTAAMLLDVDCLKHYY 736 (1001)
T ss_pred cCccCCcccccceEEEEecccCccccCccCcccHHHHHHHHHHhhcCccccceeecccceecCCCCchhhhhhHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999887765 999999
Q ss_pred HHHHHHHHHHHcCCcccccCcHHHHHhhhccCC--CCCCCCCCCHHhhhhhHHhhcccc-cccccceeEEEEeccCCcce
Q 001698 760 FLGILLAKAMFEGILVDIPFATFFLSKLKQKYN--YLNDLPSLDPELYRHLIFLKHYEA-DISELELYFVILNNEYGEQT 836 (1026)
Q Consensus 760 flG~llg~Al~~~~~l~l~f~~~f~k~Ll~~~~--~l~DL~~~Dp~l~~sL~~l~~~~~-dv~~l~L~F~~~~~~~g~~~ 836 (1026)
|+|+++|||||+|+++|+|||.||++||+|.+. +++||.++||++|++|.+||+|+| |+++|+|+|+|.++++|..+
T Consensus 737 FLGrllGK~iYE~iLvdvpFA~FFlaKllg~~~~vd~~dL~SlDPeLY~nLifLk~y~gddi~eL~L~FtVv~~e~G~~~ 816 (1001)
T KOG0942|consen 737 FLGRLLGKCIYEGILVDVPFAEFFLAKLLGTSNDVDLHDLASLDPELYKNLIFLKNYNGDDISELQLDFTVVNSELGERQ 816 (1001)
T ss_pred HHHHHHHHHHHhcceecccHHHHHHHHHhCCCCCCChhhhcccCHHHHHHHHHHHhcCCCchhhccceEEEeccccccce
Confidence 999999999999999999999999999999988 899999999999999999999998 88999999999999999999
Q ss_pred eeeccCCCcccccChhhHHHHHHHHhhhHhchhHHHHHHHHHHhhccccchhHHhhccHHHHHHhHcCCCCCCCHHHHhh
Q 001698 837 EEELLPGGKNIRVTNENVITFIHLVSNHRLNFQIRQQSSHFLRGFQQLIQKDWIDMFNEHELQLLISGSLDSLDFDDLRQ 916 (1026)
Q Consensus 837 ~~eL~p~G~~i~VT~~Nk~eYV~~~~~~~l~~~i~~q~~af~~Gf~~vi~~~~l~~F~~~EL~~li~G~~~~id~~dl~~ 916 (1026)
.+||+|||++|+||++|+.+|||+|++|+||.+|+.|+.||++||..|||++|++||++.|||.||+|.+++||+||||+
T Consensus 817 vVeLkPnGs~i~VTneNvi~YihLVsnY~LN~rir~~c~AFr~Gls~II~~eWl~MF~~~ELQiLIsG~~~pidldDLr~ 896 (1001)
T KOG0942|consen 817 VVELKPNGSKIRVTNENVIEYIHLVSNYKLNQRIRRQCSAFRKGLSQIISPEWLRMFNEHELQILISGAEDPIDLDDLRK 896 (1001)
T ss_pred eEEeccCCccceeechhhhhhhHHhhhhHHHHHHHHHHHHHhcchhhcCCHHHHHhhChhheeeeecCCcCcccHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCccCCCchHHHHHHHHHhcCCHHHHhhcceeecCCCCCCCCCcccCCCceeEeecCCCCCCcCCCCCceeccccC
Q 001698 917 NTNYVGGYHSEHYVIEMFWEVLKSFSLENQKKFLKFVTGCSRGPLLGFKYLEPLFCIQRAAGSASEEALDRLPTSATCMN 996 (1026)
Q Consensus 917 ~t~y~~gy~~~~~~I~~FW~vl~~~s~eer~~fL~FvTG~~r~P~~Gf~~L~p~f~i~~~~~~~~~~~~~~LP~A~TCfn 996 (1026)
||+|.|||+++||+|.+||||+++|+.|+|++||||||||+|+|+.|||.|.|+|||+..|.+ ++|||||+||+|
T Consensus 897 ~teY~Ggy~~~hp~Iv~FWeVl~~F~~edKr~fLKFVTscsRpPllGFK~L~P~FcI~n~gsd-----~~RLPTASTCmN 971 (1001)
T KOG0942|consen 897 NTEYAGGYSPDHPTIVMFWEVLEEFSDEDKRKFLKFVTSCSRPPLLGFKALDPAFCIRNAGSD-----DDRLPTASTCMN 971 (1001)
T ss_pred hccccCCCCCCCCchhHHHHHHHhcchHHHHHHHHHHhcCCCcccccchhcCccceeeeCCCc-----cccCCcHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999998864 689999999999
Q ss_pred eeccCCCCCHHHHHHHHHHHHHcCCCccCC
Q 001698 997 LLKLPPYRSKEQMSTKLLYAINAEAGFDLS 1026 (1026)
Q Consensus 997 ~L~LP~Yss~e~l~ekL~~AI~~~~GF~Ls 1026 (1026)
+||||+|++++.|||||+|||++|+|||||
T Consensus 972 LLKLP~y~~kt~LreKLlYAI~sgAGFeLS 1001 (1001)
T KOG0942|consen 972 LLKLPPYSNKTLLREKLLYAINSGAGFELS 1001 (1001)
T ss_pred HhcCCCcccHHHHHHHHHHHHhcccCCCCC
Confidence 999999999999999999999999999998
No 3
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.5e-90 Score=799.87 Aligned_cols=431 Identities=35% Similarity=0.588 Sum_probs=384.8
Q ss_pred hHHHHHHHHHHHhHhhccCcCCCCCCCCCCCcchhhhhhhhccc--cc--hhHhhhcCCcccchhchHHHHHHHHH----
Q 001698 578 VSTVASEVLSQLQDWNNRREFVPPSDFHADGVNDFFISQATIDG--TR--ANEILKQAPFLVPFTSRAKIFQSQLA---- 649 (1026)
Q Consensus 578 ~~~~~~~ll~~l~~~~~r~~f~p~~~f~~~~~~~~~~~~~~~~~--~~--~~~il~~~Pf~~pf~~rv~~f~~~~~---- 649 (1026)
.++++..++..||..|+|++.+|...||++++++...-+.+... .+ .-..+++|||+++-.+|+.+++-..+
T Consensus 400 ~i~~~l~~~~lly~vN~~~~lip~e~FY~~~l~~~id~~~dy~~w~~~~~~~fsfc~ypFIL~~~aK~~lL~yD~rlrM~ 479 (850)
T KOG0941|consen 400 GIRSALKLLELLYKVNCRKGLIPYEEFYNEELNDRIDMKEDYVHWRTKQMNCFSFCNYPFILNAVAKIELLQYDARLRME 479 (850)
T ss_pred chhhHHHHHHHHHHHhccCCCCCHHHhhhHHHHhHHHHHHHHHHHHHHhcccceeecCCeecccHHHHHHHHHHHHHHHH
Confidence 55688889999999999999999999999888765543333211 11 14578999999999999999864321
Q ss_pred HHHhhc------CCCC--CccceeEEEcCCchHHHHHHHHhcCCccccCCcEEEEEEeccCcccccccCCCccHHHHHHH
Q 001698 650 SVRQRH------GSHG--VFTRSRFRIRRDHILEDAYSQMSTMSEEDLRGAIRVTFVNELGVEEAGIDGGGIFKDFMENI 721 (1026)
Q Consensus 650 ~~~~~~------~~~~--~~~~~~i~VrR~~ileda~~~l~~~~~~~lk~~l~V~F~~e~G~~E~giD~GG~~rEff~~l 721 (1026)
..++.. .... +-+...++|||++|++||+++|+..+..|+||+|+|+|+| |+|+|+|||+||||.++
T Consensus 480 ~~~~~a~~~s~~~~~~~~~~p~l~l~VrR~~lv~Dsl~~l~~~~~~Dl~K~L~V~F~g-----E~g~DaGGv~kEfF~ll 554 (850)
T KOG0941|consen 480 SERRKAFLSSLFQGLQLLVSPYLKLTVRRDHLVEDALRQLSMISMSDLKKQLKVEFVG-----EEGVDAGGVRKEFFQLL 554 (850)
T ss_pred HHHHHHHHHHHHhhccCCCCCcEEEEEehhhhHHHHHHHHHhhhhhhhhcceEEEECC-----CcccccCchHHHHHHHH
Confidence 111110 1111 2244589999999999999999999999999999999999 78999999999999999
Q ss_pred HHHhhcccCCCceecCC-CceeeCCCCCcchhhHHHHHHHHHHHHHHHHHcCCcccccCcHHHHHhhhccCCCCCCCCCC
Q 001698 722 TRAAFDVQYGLFKETSD-HLLYPNPGSGMIHEQHLQFFHFLGILLAKAMFEGILVDIPFATFFLSKLKQKYNYLNDLPSL 800 (1026)
Q Consensus 722 ~~e~~~p~~glF~~~~~-~~l~pnp~s~~~~~~~l~~f~flG~llg~Al~~~~~l~l~f~~~f~k~Ll~~~~~l~DL~~~ 800 (1026)
++++++|+||||....+ +.+|.+|... +. ..+|+++|++||+||||..++|+|||.++||||++++++++||.++
T Consensus 555 ~~ei~~p~~GmF~~~e~s~~~WF~~~~~---~~-~~~y~liGil~GLAIyN~~ildlpFPlAlykkLl~~~~sl~DL~el 630 (850)
T KOG0941|consen 555 VEEIFNPEYGMFTYDEESSLLWFNPSPF---EE-EKQYHLIGILCGLAIYNNTILDLPFPLALYKKLLDKPPSLEDLKEL 630 (850)
T ss_pred HHHHcCccccCeecccccceeeecCCCC---Cc-cceeeehhHHHHHHHhccceecCCCcHHHHHHHhcCCCCHHHHHhh
Confidence 99999999999998764 4677777643 22 2479999999999999999999999999999999999999999999
Q ss_pred CHHhhhhhHHhhcccc-ccc-ccceeEEEEeccCCcceeeeccCCCcccccChhhHHHHHHHHhhhHhchhHHHHHHHHH
Q 001698 801 DPELYRHLIFLKHYEA-DIS-ELELYFVILNNEYGEQTEEELLPGGKNIRVTNENVITFIHLVSNHRLNFQIRQQSSHFL 878 (1026)
Q Consensus 801 Dp~l~~sL~~l~~~~~-dv~-~l~L~F~~~~~~~g~~~~~eL~p~G~~i~VT~~Nk~eYV~~~~~~~l~~~i~~q~~af~ 878 (1026)
.|.+|++|+.|++|+| |++ .++++|+|..+.+|...++||+|||.+|+||++||++||.+|++|.+|++|++|++||+
T Consensus 631 sP~~~~sL~~lL~y~gdd~ed~f~l~F~i~~~~~g~~~~~~L~~nG~~i~vt~~Nr~efV~~Yvd~~~n~sv~~q~~aF~ 710 (850)
T KOG0941|consen 631 SPSLGKSLKELLDYEGDDVEDVFDLTFQISQDDNGIPRTYELKPNGDEIPVTNENRREFVNLYVDYILNKSVKKQFEAFR 710 (850)
T ss_pred ChHhhhhHHHHHhccccchhhheeeEEEEEehhcCccceeeccCCCcccccccccHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 9999999999999998 775 58999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhccccchhHHhhccHHHHHHhHcCCCCCCCHHHHhhcccccCccCCCchHHHHHHHHHhcCCHHHHhhcceeecCCCC
Q 001698 879 RGFQQLIQKDWIDMFNEHELQLLISGSLDSLDFDDLRQNTNYVGGYHSEHYVIEMFWEVLKSFSLENQKKFLKFVTGCSR 958 (1026)
Q Consensus 879 ~Gf~~vi~~~~l~~F~~~EL~~li~G~~~~id~~dl~~~t~y~~gy~~~~~~I~~FW~vl~~~s~eer~~fL~FvTG~~r 958 (1026)
+||++|++.+.+++|.|+||+.+|||+++ +||+.|+++|+|+|||+++||+|+|||++++.|+.++|+|||+|+||++|
T Consensus 711 ~GF~~v~~~~~l~lf~peEl~~li~G~~~-~Dw~~l~~~~~Y~ggy~~~~~~I~~FWe~~~~~~~~~kkkfL~F~TGsdR 789 (850)
T KOG0941|consen 711 RGFYKVCDENLLRLFQPEELEKLICGSED-YDWKALEETTEYDGGYTSDSPTIQWFWEIFHAFTLEEKKKFLQFLTGSDR 789 (850)
T ss_pred HHHHHHhchhhhhhcCHHHHHHHHhCCCc-cCHHHHhhhceecCcccCCChHHHHHHHHHHhCCHHHhhhheEeecCCCc
Confidence 99999999999999999999999999976 99999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcccCCCceeEeecCCCCCCcCCCCCceeccccCeeccCCCCCHHHHHHHHHHHHHcCCCccC
Q 001698 959 GPLLGFKYLEPLFCIQRAAGSASEEALDRLPTSATCMNLLKLPPYRSKEQMSTKLLYAINAEAGFDL 1025 (1026)
Q Consensus 959 ~P~~Gf~~L~p~f~i~~~~~~~~~~~~~~LP~A~TCfn~L~LP~Yss~e~l~ekL~~AI~~~~GF~L 1025 (1026)
+|++|.+.| ++.|++.+++ .++||+||||||.|.||+|+|+|.|++||+.||++++||+|
T Consensus 790 ipv~G~~~l--~~~i~~~~~~-----~~~lP~shTCfN~L~Lp~YsskekL~~kL~~Ai~~~~GF~l 849 (850)
T KOG0941|consen 790 IPVGGLAKL--KLVIQKNGPD-----EDRLPVSHTCFNVLLLPEYSSKEKLEEKLLTAINNTEGFGL 849 (850)
T ss_pred cccCChhhc--eEEEecCCCC-----cccCcchhhhhhhhhccccCcHHHHHHHHHHHHHhccCcCC
Confidence 999999998 5888887754 47999999999999999999999999999999999999997
No 4
>COG5021 HUL4 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.8e-87 Score=809.63 Aligned_cols=352 Identities=41% Similarity=0.726 Sum_probs=338.0
Q ss_pred ceeEEEcCCchHHHHHHHHhcCCccccCCcEEEEEEeccCcccccccCCCccHHHHHHHHHHhhcccCCCceecC--CCc
Q 001698 663 RSRFRIRRDHILEDAYSQMSTMSEEDLRGAIRVTFVNELGVEEAGIDGGGIFKDFMENITRAAFDVQYGLFKETS--DHL 740 (1026)
Q Consensus 663 ~~~i~VrR~~ileda~~~l~~~~~~~lk~~l~V~F~~e~G~~E~giD~GG~~rEff~~l~~e~~~p~~glF~~~~--~~~ 740 (1026)
..+|+|||+++++|+++++...++.++|+.|+|+|+| |+|||+||++||||..+++++|+|+|+||..+. ...
T Consensus 514 ~l~I~VrRd~vf~Dsy~~i~~~~~~~~k~~L~i~F~~-----EeGiD~GGltrE~~~lLs~~~Fnp~y~LF~y~t~d~~~ 588 (872)
T COG5021 514 YLHIKVRRDRVFEDSYREIMDESGDDLKKTLEIEFVG-----EEGIDAGGLTREWLFLLSKEMFNPDYGLFEYITEDLYT 588 (872)
T ss_pred ceEEEEecccchHHHHHHHHHhchhhhcceEEEEecC-----cccccCCccchHHHHHHhHHhcCCcccceeeecccccc
Confidence 4589999999999999999999999999999999999 789999999999999999999999999998765 346
Q ss_pred eeeCCCCCcchhhHHHHHHHHHHHHHHHHHcCCcccccCcHHHHHhhhccCCCCCCCCCCCHHhhhhhHHhhcccccccc
Q 001698 741 LYPNPGSGMIHEQHLQFFHFLGILLAKAMFEGILVDIPFATFFLSKLKQKYNYLNDLPSLDPELYRHLIFLKHYEADISE 820 (1026)
Q Consensus 741 l~pnp~s~~~~~~~l~~f~flG~llg~Al~~~~~l~l~f~~~f~k~Ll~~~~~l~DL~~~Dp~l~~sL~~l~~~~~dv~~ 820 (1026)
++|||.+. ++++|+++|+|+|++||+||||++.+|++||.+|||+|++++++++|+.++||++|++|.+|++++.|...
T Consensus 589 ~~~n~~s~-~npe~L~yf~fiGrvIGkaIyd~~~LD~~F~~~fyKklL~~~~sl~Dl~s~Dpe~y~sLv~ll~~~~d~~~ 667 (872)
T COG5021 589 LPINPLSS-INPEHLSYFKFLGRVIGKAIYDSRILDVQFSKAFYKKLLGKPVSLVDLESLDPELYRSLVWLLNNDIDETI 667 (872)
T ss_pred cCcCcccc-CCHHHHHHHHHHHHHHHHHHHhcceeeecchHHHHHHHhCCCCchhhhhhcCHHHHHHHHHHHcCCCCcce
Confidence 78898886 68999999999999999999999999999999999999999999999999999999999999999988778
Q ss_pred cceeEEEEeccCCcceeeeccCCCcccccChhhHHHHHHHHhhhHhchhHHHHHHHHHHhhccccchhHHhhccHHHHHH
Q 001698 821 LELYFVILNNEYGEQTEEELLPGGKNIRVTNENVITFIHLVSNHRLNFQIRQQSSHFLRGFQQLIQKDWIDMFNEHELQL 900 (1026)
Q Consensus 821 l~L~F~~~~~~~g~~~~~eL~p~G~~i~VT~~Nk~eYV~~~~~~~l~~~i~~q~~af~~Gf~~vi~~~~l~~F~~~EL~~ 900 (1026)
++++|++.++.+|...+|||||||++|+||++||++||++|++|+++++|++|++||..||.+|||++|+.+|+++||+.
T Consensus 668 l~l~Fsve~~~fg~~~tVeLipnG~ni~VT~~Nk~eYV~~vvdy~L~k~ie~Q~~AF~~GF~~ii~~~~i~iF~e~ELe~ 747 (872)
T COG5021 668 LDLTFTVEDDSFGESRTVELIPNGRNISVTNENKKEYVKKVVDYKLNKRVEKQFSAFKSGFSEIIPPDLLQIFDESELEL 747 (872)
T ss_pred eeeeEEEeecccCceeEEEeccCCccccccchHHHHHHHHHHHHHhhhhHHHHHHHHHhhHHHhcCHHHHhhcCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHcCCCCCCCHHHHhhcccccCccCCCchHHHHHHHHHhcCCHHHHhhcceeecCCCCCCCCCcccCCC-----ceeEee
Q 001698 901 LISGSLDSLDFDDLRQNTNYVGGYHSEHYVIEMFWEVLKSFSLENQKKFLKFVTGCSRGPLLGFKYLEP-----LFCIQR 975 (1026)
Q Consensus 901 li~G~~~~id~~dl~~~t~y~~gy~~~~~~I~~FW~vl~~~s~eer~~fL~FvTG~~r~P~~Gf~~L~p-----~f~i~~ 975 (1026)
||||.+++||++|||+||.|. ||++++|+|.|||+++++|+.|+|++|||||||++|+|++||+.|+| +|+|++
T Consensus 748 LI~G~~e~iDidd~K~~T~Y~-GY~~~s~~I~wFWeii~~f~~eer~klLQFvTGtsriPi~GFk~L~~~~~~~kf~I~~ 826 (872)
T COG5021 748 LIGGIPEDIDIDDWKSNTAYH-GYTEDSPIIVWFWEIISEFDFEERAKLLQFVTGTSRIPINGFKDLQGSDGVRKFTIEK 826 (872)
T ss_pred HHCCCCccccHHHHhhccccc-ccccCCcHHHHHHHHHHHhCHHHHhhhheeccCCCCCCCCChhhcCCCcccceeeeec
Confidence 999998779999999999996 79999999999999999999999999999999999999999999999 788988
Q ss_pred cCCCCCCcCCCCCceeccccCeeccCCCCCHHHHHHHHHHHHHcCCCccCC
Q 001698 976 AAGSASEEALDRLPTSATCMNLLKLPPYRSKEQMSTKLLYAINAEAGFDLS 1026 (1026)
Q Consensus 976 ~~~~~~~~~~~~LP~A~TCfn~L~LP~Yss~e~l~ekL~~AI~~~~GF~Ls 1026 (1026)
.+.+ ++|||+||||||+|+||+|+|||+||+||.+||++|+||+++
T Consensus 827 ~g~~-----~~rLP~ahTCFN~L~LP~YsSke~Lr~kL~~AI~Eg~GFg~~ 872 (872)
T COG5021 827 GGTD-----DDRLPSAHTCFNRLKLPEYSSKEKLRSKLLTAINEGAGFGLL 872 (872)
T ss_pred CCCc-----cccCCchhhhhhhccCCCCCCHHHHHHHHHHHHHhccCcCcC
Confidence 7753 679999999999999999999999999999999999999985
No 5
>cd00078 HECTc HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ubiquitin molecules to the end of growing ubiquitin chains.
Probab=100.00 E-value=7.5e-82 Score=720.19 Aligned_cols=348 Identities=49% Similarity=0.821 Sum_probs=333.1
Q ss_pred eEEEcCCchHHHHHHHHhcCCccccCCcEEEEEEeccCcccccccCCCccHHHHHHHHHHhhcccCCCceecCC--Ccee
Q 001698 665 RFRIRRDHILEDAYSQMSTMSEEDLRGAIRVTFVNELGVEEAGIDGGGIFKDFMENITRAAFDVQYGLFKETSD--HLLY 742 (1026)
Q Consensus 665 ~i~VrR~~ileda~~~l~~~~~~~lk~~l~V~F~~e~G~~E~giD~GG~~rEff~~l~~e~~~p~~glF~~~~~--~~l~ 742 (1026)
+++|||++|++|+++++...++.+++++++|+|+| |.|+|+|||+||||+++++++++|++|||..+++ +.+|
T Consensus 2 ~i~v~R~~i~~~~~~~l~~~~~~~l~~~l~V~F~g-----E~g~D~GG~~rE~~~~l~~el~~~~~~lF~~~~~~~~~~~ 76 (352)
T cd00078 2 KITVRRDRILEDALRQLSKVSSSDLKKVLEVEFVG-----EEGIDAGGVTREFFTLVSKELFNPSYGLFRYTPDDSGLLY 76 (352)
T ss_pred eEEEECCcHHHHHHHHHHhcCHHHhcCceEEEECC-----CCccCCCcchHHHHHHHHHHHcCCCCCCeeecCCCCceEE
Confidence 68999999999999999999888999999999998 7899999999999999999999999999999887 8899
Q ss_pred eCCCCCcchhhHHHHHHHHHHHHHHHHHcCCcccccCcHHHHHhhhccCCCCCCCCCCCHHhhhhhHHhhcccccccccc
Q 001698 743 PNPGSGMIHEQHLQFFHFLGILLAKAMFEGILVDIPFATFFLSKLKQKYNYLNDLPSLDPELYRHLIFLKHYEADISELE 822 (1026)
Q Consensus 743 pnp~s~~~~~~~l~~f~flG~llg~Al~~~~~l~l~f~~~f~k~Ll~~~~~l~DL~~~Dp~l~~sL~~l~~~~~dv~~l~ 822 (1026)
|||.+. ..++++++|+++|+++|+||++|.+++++||++|||+|+|.+++++||+++||++|++|++|+++++++++++
T Consensus 77 ~~p~~~-~~~~~~~~f~~~G~lig~al~~~~~l~l~f~~~f~k~L~g~~~t~~Dl~~iD~~~~~sl~~l~~~~~~~~~l~ 155 (352)
T cd00078 77 PNPSSF-ADEDHLKLFRFLGRLLGKALYEGRLLDLPFSRAFYKKLLGKPLSLEDLEELDPELYKSLKELLDNDGDEDDLE 155 (352)
T ss_pred eCCCcc-cchhHHHHHHHHHHHHHHHHHcCceeCCCCCHHHHHHHhCCCCCHHHHHHhCHHHHHHHHHHHhcCCchhhhc
Confidence 999875 3356889999999999999999999999999999999999999999999999999999999999887788999
Q ss_pred eeEEEEecc-CCcceeeeccCCCcccccChhhHHHHHHHHhhhHhchhHHHHHHHHHHhhccccchhHHhhccHHHHHHh
Q 001698 823 LYFVILNNE-YGEQTEEELLPGGKNIRVTNENVITFIHLVSNHRLNFQIRQQSSHFLRGFQQLIQKDWIDMFNEHELQLL 901 (1026)
Q Consensus 823 L~F~~~~~~-~g~~~~~eL~p~G~~i~VT~~Nk~eYV~~~~~~~l~~~i~~q~~af~~Gf~~vi~~~~l~~F~~~EL~~l 901 (1026)
|+|++..+. .|+..++||+|||++++||.+||++||+++++|+++++++.|++||++||++|+|.+++++|+|+||+.+
T Consensus 156 l~F~~~~~~~~~~~~~veL~~~G~~~~VT~~N~~eYv~~~~~~~l~~~~~~~~~afr~Gf~~vip~~~l~~f~~~eL~~l 235 (352)
T cd00078 156 LTFTIELDSSFGGAVTVELKPGGRDIPVTNENKEEYVDLYVDYRLNKGIEEQVEAFRDGFSEVIPEELLSLFTPEELELL 235 (352)
T ss_pred ceeEEEEeecCCCcceEecCCCCCCCcCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHcCHHhhhCCCHHHHHHH
Confidence 999998776 8888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCCCCCHHHHhhcccccCccCCCchHHHHHHHHHhcCCHHHHhhcceeecCCCCCCCCCcccCCCceeEeecCCCCC
Q 001698 902 ISGSLDSLDFDDLRQNTNYVGGYHSEHYVIEMFWEVLKSFSLENQKKFLKFVTGCSRGPLLGFKYLEPLFCIQRAAGSAS 981 (1026)
Q Consensus 902 i~G~~~~id~~dl~~~t~y~~gy~~~~~~I~~FW~vl~~~s~eer~~fL~FvTG~~r~P~~Gf~~L~p~f~i~~~~~~~~ 981 (1026)
+||.+ +||+++|++|++|.|||+.++++|+|||+++++||+|||++||+|+|||+|+|++||+.++|+|+|.+.+.
T Consensus 236 vcG~~-~id~~~l~~~~~y~~~~~~~~~~i~~Fw~vl~~~s~eer~~fL~F~TG~~rlP~~G~~~l~~~i~i~~~~~--- 311 (352)
T cd00078 236 ICGSE-DIDLEDLKKNTEYKGGYSSDSPTIQWFWEVLESFTNEERKKFLQFVTGSSRLPVGGFADLNPKFTIRRVGS--- 311 (352)
T ss_pred hCCCC-CCCHHHHHhceEecCCCCCCCHHHHHHHHHHHhCCHHHHHHhheeecCCCCCCCcchhhcCCCeEEEECCC---
Confidence 99985 59999999999999999999999999999999999999999999999999999999999999999998764
Q ss_pred CcCCCCCceeccccCeeccCCCCCHHHHHHHHHHHHHcCCCcc
Q 001698 982 EEALDRLPTSATCMNLLKLPPYRSKEQMSTKLLYAINAEAGFD 1024 (1026)
Q Consensus 982 ~~~~~~LP~A~TCfn~L~LP~Yss~e~l~ekL~~AI~~~~GF~ 1024 (1026)
++++||+||||||+|+||.|+|+|+|++||++||++++|||
T Consensus 312 --~~~~LP~a~TCf~~L~LP~Yss~e~l~~kL~~AI~~~~gF~ 352 (352)
T cd00078 312 --PDDRLPTAHTCFNLLKLPPYSSKEILREKLLYAINEGAGFG 352 (352)
T ss_pred --CCCCCCcchhhhccccCCCCCCHHHHHHHHHHHHHcCCCCC
Confidence 36899999999999999999999999999999999999997
No 6
>smart00119 HECTc Domain Homologous to E6-AP Carboxyl Terminus with. E3 ubiquitin-protein ligases. Can bind to E2 enzymes.
Probab=100.00 E-value=1e-78 Score=687.27 Aligned_cols=331 Identities=45% Similarity=0.780 Sum_probs=309.0
Q ss_pred CccccCCc-EEEEEEeccCcccccccCCCccHHHHHHHHHHhhcccCCCceecCC-CceeeCCCCCcchhhHHHHHHHHH
Q 001698 685 SEEDLRGA-IRVTFVNELGVEEAGIDGGGIFKDFMENITRAAFDVQYGLFKETSD-HLLYPNPGSGMIHEQHLQFFHFLG 762 (1026)
Q Consensus 685 ~~~~lk~~-l~V~F~~e~G~~E~giD~GG~~rEff~~l~~e~~~p~~glF~~~~~-~~l~pnp~s~~~~~~~l~~f~flG 762 (1026)
+..++|++ ++|+|+| |+|+|+|||+||||+++++++++|++|||..+++ ..+||||.+....++++++|+++|
T Consensus 3 ~~~~~~~~~l~V~F~g-----E~g~d~gG~~rEf~~~l~~el~~~~~~lf~~~~~~~~~~~~p~~~~~~~~~l~~f~~~G 77 (336)
T smart00119 3 SDEDLKKSVLEIEFEG-----EEGLDGGGVTREFFFLLSKELFNPDYGLFRYSPNDYLLYPNPRAFFANPEHLAYFRFIG 77 (336)
T ss_pred ChHHhCCCeEEEEECC-----CCCccCCchHHHHHHHHHHHHhCcccCCceEcCCCCeEEeCCCccccchHHHHHHHHHH
Confidence 34678899 9999998 7899999999999999999999999999998875 489999987655578899999999
Q ss_pred HHHHHHHHcCCcccccCcHHHHHhhhccCCCCCCCCCCCHHhhhhhHHhhcccccccccceeEEEE-eccCCcceeeecc
Q 001698 763 ILLAKAMFEGILVDIPFATFFLSKLKQKYNYLNDLPSLDPELYRHLIFLKHYEADISELELYFVIL-NNEYGEQTEEELL 841 (1026)
Q Consensus 763 ~llg~Al~~~~~l~l~f~~~f~k~Ll~~~~~l~DL~~~Dp~l~~sL~~l~~~~~dv~~l~L~F~~~-~~~~g~~~~~eL~ 841 (1026)
+++|+||++|.+++++||++|||+|+|.+++++||+++||++|++|++|+...+..++++++|++. ...+|+..++||+
T Consensus 78 ~lig~al~~~~~~~l~f~~~f~k~L~~~~~tl~Dl~~~D~~~~~sl~~l~~~~~~~~~~~l~F~~~~~~~~g~~~~~eL~ 157 (336)
T smart00119 78 RVLGKALYDNRLLDLFFARPFYKKLLGKPVTLHDLESLDPELYKSLKWLLLNNDTSEELDLTFSIVLTSEFGQVKVVELK 157 (336)
T ss_pred HHHHHHHHcCCeeCCCCCHHHHHHHhCCCCCHHHHHHhCHHHHHHHHHHHHhCCCcccccceEEEEeeecCCCcceEecC
Confidence 999999999999999999999999999999999999999999999999942222335689999854 4457888999999
Q ss_pred CCCcccccChhhHHHHHHHHhhhHhchhHHHHHHHHHHhhccccchhHHhhccHHHHHHhHcCCCCCCCHHHHhhccccc
Q 001698 842 PGGKNIRVTNENVITFIHLVSNHRLNFQIRQQSSHFLRGFQQLIQKDWIDMFNEHELQLLISGSLDSLDFDDLRQNTNYV 921 (1026)
Q Consensus 842 p~G~~i~VT~~Nk~eYV~~~~~~~l~~~i~~q~~af~~Gf~~vi~~~~l~~F~~~EL~~li~G~~~~id~~dl~~~t~y~ 921 (1026)
|||++++||.+||++||+++++|+++.+++.|++||++||++|+|.+++++|+|+||+.++||.++ ||+++|++||+|.
T Consensus 158 ~~G~~~~Vt~~N~~eYv~~~~~~~l~~~~~~~~~afr~Gf~~vip~~~l~~f~~~eL~~licG~~~-i~~~~l~~~~~~~ 236 (336)
T smart00119 158 PGGSNIPVTEENKKEYVHLVIEYRLNKGIEKQLEAFREGFSEVIPENLLRLFTPEELELLICGSPE-IDVDDLKSNTEYK 236 (336)
T ss_pred CCCCCCcCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHcCHHHhhCCCHHHHHHHhCCCCC-CCHHHHhhheEEc
Confidence 999999999999999999999999999999999999999999999999999999999999999875 9999999999999
Q ss_pred CccCCCchHHHHHHHHHhcCCHHHHhhcceeecCCCCCCCCCcccCCCceeEeecCCCCCCcCCCCCceeccccCeeccC
Q 001698 922 GGYHSEHYVIEMFWEVLKSFSLENQKKFLKFVTGCSRGPLLGFKYLEPLFCIQRAAGSASEEALDRLPTSATCMNLLKLP 1001 (1026)
Q Consensus 922 ~gy~~~~~~I~~FW~vl~~~s~eer~~fL~FvTG~~r~P~~Gf~~L~p~f~i~~~~~~~~~~~~~~LP~A~TCfn~L~LP 1001 (1026)
+||++++++|+|||+++++||+|||++||+|+||++|+|++||+.++|+|+|++.+. ++++||+||||||+|+||
T Consensus 237 ~g~~~~~~~i~~Fw~vl~~~s~ee~~~fL~F~TG~~rlP~~G~~~l~~~~~i~~~~~-----~~~~LP~a~TCfn~L~LP 311 (336)
T smart00119 237 GGYSENSQTIKWFWEVVESFTNEERRKLLQFVTGSSRLPVGGFAALSPKFTIRKAGS-----DDDRLPTAHTCFNRLKLP 311 (336)
T ss_pred CCCCCCCHHHHHHHHHHHHCCHHHHHHhheeccCCCCCCCCchhhcCCceEEEECCC-----CCCCCCccccccCcCcCC
Confidence 999999999999999999999999999999999999999999999999999998753 257999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCCccCC
Q 001698 1002 PYRSKEQMSTKLLYAINAEAGFDLS 1026 (1026)
Q Consensus 1002 ~Yss~e~l~ekL~~AI~~~~GF~Ls 1026 (1026)
.|+|+|+|++||++||++++||+||
T Consensus 312 ~Yss~e~l~~kL~~AI~~~~gF~l~ 336 (336)
T smart00119 312 PYSSKEILREKLLLAINEGKGFGLS 336 (336)
T ss_pred CCCCHHHHHHHHHHHHHcCCCCCCC
Confidence 9999999999999999999999997
No 7
>KOG0939 consensus E3 ubiquitin-protein ligase/Putative upstream regulatory element binding protein [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=100.00 E-value=3.3e-78 Score=689.07 Aligned_cols=381 Identities=38% Similarity=0.676 Sum_probs=356.3
Q ss_pred hHhhhcCCcccchhchHHHHHHHHHHHHhhcCCCCCccceeEEEcCCchHHHHHHHHhcCCccccCCcEEEEEEeccCcc
Q 001698 625 NEILKQAPFLVPFTSRAKIFQSQLASVRQRHGSHGVFTRSRFRIRRDHILEDAYSQMSTMSEEDLRGAIRVTFVNELGVE 704 (1026)
Q Consensus 625 ~~il~~~Pf~~pf~~rv~~f~~~~~~~~~~~~~~~~~~~~~i~VrR~~ileda~~~l~~~~~~~lk~~l~V~F~~e~G~~ 704 (1026)
..++..+|.++.|+.|.++|++.++...... ....+.|+|+.+++|+++++...+++++|.++.|+|.|
T Consensus 331 f~ll~~~~~ll~F~~Kr~yf~r~L~~~~~~~------~~~~v~v~R~~v~~~S~~~~~~~s~~e~~~rl~I~f~g----- 399 (720)
T KOG0939|consen 331 FSLLLKNPMLLDFDNKRKYFKRELRKEHASS------EKLAVLVRRALVLEDSFRALLYKSPEELKTRLEVTFQG----- 399 (720)
T ss_pred hhhheecCcceecccHHHHHHHHHHHhhccC------CcceEEEeHHHHHHHHHHHHHhCCHHHHhcceEEEEec-----
Confidence 5678899999999999999999886554431 12378999999999999999999999999999999999
Q ss_pred cccccCCCccHHHHHHHHHHhhcccCCCceecCCC--ceeeCCCCCcchhhHHHHHHHHHHHHHHHHHcCCcccccCcHH
Q 001698 705 EAGIDGGGIFKDFMENITRAAFDVQYGLFKETSDH--LLYPNPGSGMIHEQHLQFFHFLGILLAKAMFEGILVDIPFATF 782 (1026)
Q Consensus 705 E~giD~GG~~rEff~~l~~e~~~p~~glF~~~~~~--~l~pnp~s~~~~~~~l~~f~flG~llg~Al~~~~~l~l~f~~~ 782 (1026)
|+|+|+|||+||||..+++++|||.|+||...++. .+.|||+|+ .+++||.+|+|+||++|||+|+|.++++.|...
T Consensus 400 EEg~D~gG~~rEw~~ll~r~ifnp~~alf~~~~~d~tt~~pn~~s~-~np~hLs~fkf~GriigKal~d~ql~~c~ftrs 478 (720)
T KOG0939|consen 400 EEGSDAGGVTREWLQLLSREIFNPRYALFTTVGSDQTTFHPNPNSY-VNPEHLSYFKFVGRIIGKALFDGQLLECYFTRS 478 (720)
T ss_pred ccccccchHHHHHHHHHHHHHcCCCcceEEEcCCCceEEeeCCccc-CChhhhhHHHhhHHHHHHHHhcchhhhheeeHH
Confidence 78999999999999999999999999999987655 788999986 689999999999999999999999999999999
Q ss_pred HHHhhhccCCCCCCCCCCCHHhhhhhHHhhcccccccc-cceeEEEEeccCCcceeeeccCCCcccccChhhHHHHHHHH
Q 001698 783 FLSKLKQKYNYLNDLPSLDPELYRHLIFLKHYEADISE-LELYFVILNNEYGEQTEEELLPGGKNIRVTNENVITFIHLV 861 (1026)
Q Consensus 783 f~k~Ll~~~~~l~DL~~~Dp~l~~sL~~l~~~~~dv~~-l~L~F~~~~~~~g~~~~~eL~p~G~~i~VT~~Nk~eYV~~~ 861 (1026)
|||+++|.+++..|+++.||+.|+++.+++++ |+++ ++++|+...+++|...++||+|||++|.||++||.+||+++
T Consensus 479 fyk~ilG~~v~~~d~es~DP~y~k~l~~il~n--dis~~l~ltfs~e~~~~g~~~~~eL~p~G~~i~Vt~~nK~~yv~lv 556 (720)
T KOG0939|consen 479 FYKHILGLPVTYHDMESADPEYYKSLVWILKN--DISDTLELTFSEEDDEFGVESVVELKPGGAKIYVTEANKQEYVQLV 556 (720)
T ss_pred HHhhccCCceeeeehhhcChHHhhceeehhcC--CcccceeEEEEEeeccccccceeecccCCCceeeccccHHHHHHHH
Confidence 99999999999999999999999999999874 4543 89999999999999999999999999999999999999999
Q ss_pred hhhHhchhHHHHHHHHHHhhccccchhHHhhccHHHHHHhHcCCCCCCCHHHHhhcccccCccCCCchHHHHHHHHHhcC
Q 001698 862 SNHRLNFQIRQQSSHFLRGFQQLIQKDWIDMFNEHELQLLISGSLDSLDFDDLRQNTNYVGGYHSEHYVIEMFWEVLKSF 941 (1026)
Q Consensus 862 ~~~~l~~~i~~q~~af~~Gf~~vi~~~~l~~F~~~EL~~li~G~~~~id~~dl~~~t~y~~gy~~~~~~I~~FW~vl~~~ 941 (1026)
++|||..+|++|++||.+||+.+||...+++|++.||+.||||.++ ||++||++||.|. ||+..+++|+|||++|++|
T Consensus 557 ~q~rL~~~ir~ql~afl~Gl~~iip~~li~if~E~ELELLisGlpe-idvdd~k~nt~y~-~~~~~~~~i~wFWrav~sf 634 (720)
T KOG0939|consen 557 TQYRLTNSIRKQLDAFLAGLHEIIPKVLLSIFDEQELELLISGLPE-IDVDDLKANTEYL-GYTKASSVIQWFWRAVRSF 634 (720)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHhhHHHHHHHhhhHHHHHHHcCCCc-ccHHHHHhhhhhh-cccccchHHHHHHHHHhhh
Confidence 9999999999999999999999999999999999999999999986 9999999999997 7888899999999999999
Q ss_pred CHHHHhhcceeecCCCCCCCCCcccCCC-----ceeEeecCCCCCCcCCCCCceeccccCeeccCCCCCHHHHHHHHHHH
Q 001698 942 SLENQKKFLKFVTGCSRGPLLGFKYLEP-----LFCIQRAAGSASEEALDRLPTSATCMNLLKLPPYRSKEQMSTKLLYA 1016 (1026)
Q Consensus 942 s~eer~~fL~FvTG~~r~P~~Gf~~L~p-----~f~i~~~~~~~~~~~~~~LP~A~TCfn~L~LP~Yss~e~l~ekL~~A 1016 (1026)
+.|||.|||+||||++++|++||++|.+ +|.|++.... .++||+||||||.|+||.|.|||.++++|+.|
T Consensus 635 ~~eeraklLqFvTGtSkvP~~GF~~l~g~ng~q~fqi~~~~~s-----~d~LP~ahTCfnqL~LP~Y~Sye~l~~~LllA 709 (720)
T KOG0939|consen 635 DQEERAKLLQFVTGTSKVPLGGFAALEGMNGVQKFQIHADPGS-----TDRLPTAHTCFNQLFLPHYASYEQLRESLLLA 709 (720)
T ss_pred cHHHHHhhHeeecccccCCcccccccccCCcceeEEEEeCCCC-----CCCCcchhhhhhhhcCcchhhHHHHHHHHHHH
Confidence 9999999999999999999999999998 8999986643 57999999999999999999999999999999
Q ss_pred HHcC-CCccCC
Q 001698 1017 INAE-AGFDLS 1026 (1026)
Q Consensus 1017 I~~~-~GF~Ls 1026 (1026)
|++| +|||+.
T Consensus 710 i~E~segfg~a 720 (720)
T KOG0939|consen 710 INEGSEGFGMA 720 (720)
T ss_pred HHhhhhccCcC
Confidence 9999 499873
No 8
>KOG0170 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-73 Score=628.11 Aligned_cols=392 Identities=31% Similarity=0.528 Sum_probs=348.9
Q ss_pred cchhHhhhcCCcccchhchHHHHHHHH-------HHHHhhcCC------------CCCccceeEEEcCCchHHHHHHHHh
Q 001698 622 TRANEILKQAPFLVPFTSRAKIFQSQL-------ASVRQRHGS------------HGVFTRSRFRIRRDHILEDAYSQMS 682 (1026)
Q Consensus 622 ~~~~~il~~~Pf~~pf~~rv~~f~~~~-------~~~~~~~~~------------~~~~~~~~i~VrR~~ileda~~~l~ 682 (1026)
.+...+...+||+|||++|..+|+.-. ...++..++ -+...|.+++|.|++|++.|.+.|.
T Consensus 165 ~w~~~L~~~cpfLfpf~Tr~~~f~~taFg~~R~~~~~k~~s~~~~~~s~~e~~~~~grL~RkK~risR~~Il~sa~kvm~ 244 (621)
T KOG0170|consen 165 DWSLFLTRRCPFLFPFDTRMLYFYSTAFGLSRAIQLLKNKSKGSKDGSNDEALQQLGRLTRKKLRISRKTILASALKVME 244 (621)
T ss_pred hhhhhhhhcCCeeccHHHHHHHHHHHHhhhhhHHHHHhhcccCCCCCCchHHhHhhcccchhhhhhhHHHHHHHHHHHHH
Confidence 456778889999999999999998521 111111100 1235677999999999999999999
Q ss_pred cCCccccCCcEEEEEEeccCcccccccCCCccHHHHHHHHHHhhcccCCCceec----------CC-------CceeeCC
Q 001698 683 TMSEEDLRGAIRVTFVNELGVEEAGIDGGGIFKDFMENITRAAFDVQYGLFKET----------SD-------HLLYPNP 745 (1026)
Q Consensus 683 ~~~~~~lk~~l~V~F~~e~G~~E~giD~GG~~rEff~~l~~e~~~p~~glF~~~----------~~-------~~l~pnp 745 (1026)
..+. -+..|+|+|.+|+|+ |-||+-||++.+++++..+..|||+.. .+ .++||.|
T Consensus 245 ~ygs--s~~vLEIEY~~EvGT------GLGPTLEFYtlVSk~fq~~sLgmWR~~s~s~~~~k~~~~t~~v~~~sgLFp~P 316 (621)
T KOG0170|consen 245 KYGS--SKAVLEIEYEEEVGT------GLGPTLEFYTLVSKEFQRASLGMWRCNSVSYRSGKPQENTKDVYITSGLFPRP 316 (621)
T ss_pred HhcC--CcceEEEEecccccc------CCCcceeeHHHHHHHHhhccccccccCceeeccCCCCCCcchhhhccccCCCC
Confidence 8753 478999999998775 669999999999999999999999963 11 3689988
Q ss_pred CCCcc----hhhHHHHHHHHHHHHHHHHHcCCcccccCcHHHHHhhhccCCCCCCCCCCCHHhhhhhHHhhc--------
Q 001698 746 GSGMI----HEQHLQFFHFLGILLAKAMFEGILVDIPFATFFLSKLKQKYNYLNDLPSLDPELYRHLIFLKH-------- 813 (1026)
Q Consensus 746 ~s~~~----~~~~l~~f~flG~llg~Al~~~~~l~l~f~~~f~k~Ll~~~~~l~DL~~~Dp~l~~sL~~l~~-------- 813 (1026)
..... ++..+++|+++|+++||||++|+++|+||+++|||.++|++.+..|+..+||++.++|..|..
T Consensus 317 ~~~ts~~se~~kvi~~F~~LG~~vAkal~D~Rildlpls~~Fykl~l~q~Lt~~dv~~vd~~l~~sL~~Le~vv~~k~~~ 396 (621)
T KOG0170|consen 317 WPPTSNSSENEKVIELFRLLGTFVAKALQDGRILDLPLSKAFYKLILGQELTSHDVTTVDPELAKSLLELELVVPRKKKL 396 (621)
T ss_pred CCCCCCchhHHHHHHHHHHHHHHHHHHHhcCceEeeeccHHHHHHHhcCCcccccceecCHHHHHHHHHHHHHhhhhhhh
Confidence 65432 234578899999999999999999999999999999999999999999999999999987742
Q ss_pred --ccc--------------cccccceeEEEEeccCCcceeeeccCCCcccccChhhHHHHHHHHhhhHhchhHHHHHHHH
Q 001698 814 --YEA--------------DISELELYFVILNNEYGEQTEEELLPGGKNIRVTNENVITFIHLVSNHRLNFQIRQQSSHF 877 (1026)
Q Consensus 814 --~~~--------------dv~~l~L~F~~~~~~~g~~~~~eL~p~G~~i~VT~~Nk~eYV~~~~~~~l~~~i~~q~~af 877 (1026)
+-| .||||+|+|+++. -..+||+|||.+++||..|.+|||+.|+++.++++|.+|++||
T Consensus 397 ~~~~~d~~~a~~dltl~g~~iEdL~LdFTLPG-----~p~ieL~p~g~~~~V~~~NleEYi~~VId~tv~kGVqkQleAF 471 (621)
T KOG0170|consen 397 EKYIGDVANADDDLTLNGCSIEDLSLDFTLPG-----FPDIELIPGGANKPVTISNLEEYIHGVIDATVGKGVQKQLEAF 471 (621)
T ss_pred hhhcccccccccceeecCcchhhceeeEecCC-----CCCeeeccCCCCCccccccHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 111 2589999999873 3568999999999999999999999999999999999999999
Q ss_pred HHhhccccchhHHhhccHHHHHHhHcCCCCCCCHHHHhhcccccCccCCCchHHHHHHHHHhcCCHHHHhhcceeecCCC
Q 001698 878 LRGFQQLIQKDWIDMFNEHELQLLISGSLDSLDFDDLRQNTNYVGGYHSEHYVIEMFWEVLKSFSLENQKKFLKFVTGCS 957 (1026)
Q Consensus 878 ~~Gf~~vi~~~~l~~F~~~EL~~li~G~~~~id~~dl~~~t~y~~gy~~~~~~I~~FW~vl~~~s~eer~~fL~FvTG~~ 957 (1026)
+.||.+|+|-+.|++|+|+||..++||..+.|+.+.|.+|.+.+|||+.++|+|+.+.++++.|+.||||.||||||||+
T Consensus 472 r~GF~~VF~~~~Lqif~p~EL~~llcg~~e~ws~~TL~~~i~~DHGYT~~Sp~i~~li~ils~f~~~qQR~FLQFvTGSp 551 (621)
T KOG0170|consen 472 RSGFSSVFPYEHLQIFTPEELVTLLCGVEEDWSMATLMEHIKADHGYTMDSPIIHDLISILSAFDKEQQRLFLQFVTGSP 551 (621)
T ss_pred HhhhhhccchhheeecCHHHHHHHhccchhhccHHHHHHhcccccCccCCCcHHHHHHHHhhhhchHHHHHHHHHhcCCC
Confidence 99999999999999999999999999998899999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcccCCCceeEeecCCCCCCcCCCCCceeccccCeeccCCCCCHHHHHHHHHHHHHcCCC-ccCC
Q 001698 958 RGPLLGFKYLEPLFCIQRAAGSASEEALDRLPTSATCMNLLKLPPYRSKEQMSTKLLYAINAEAG-FDLS 1026 (1026)
Q Consensus 958 r~P~~Gf~~L~p~f~i~~~~~~~~~~~~~~LP~A~TCfn~L~LP~Yss~e~l~ekL~~AI~~~~G-F~Ls 1026 (1026)
|+|+|||+.|+|+++|.+...+.++.+++.||+++||.|+||||+|+|+|+|++||.|||++|+| |+||
T Consensus 552 rLPiGGfasLNPklTIVrKh~e~~~t~Dd~LPSVMTCaNYLKLP~YSSkEiM~~kL~~Ai~EGqgSFhLS 621 (621)
T KOG0170|consen 552 RLPIGGFASLNPKLTIVRKHAEDSETPDDYLPSVMTCANYLKLPPYSSKEIMRSKLLYAIEEGQGSFHLS 621 (621)
T ss_pred CCCCCcccccCCCeEEEeccCCCCCCcccccchHHHHHhhhcCCCCchHHHHHHHHHHHHHccccccccC
Confidence 99999999999999999998777778899999999999999999999999999999999999998 9998
No 9
>PF00632 HECT: HECT-domain (ubiquitin-transferase); InterPro: IPR000569 The name HECT comes from 'Homologous to the E6-AP Carboxyl Terminus' []. Proteins containing this domain at the C terminus include ubiquitin-protein ligase, which regulates ubiquitination of CDC25. Ubiquitin-protein ligase accepts ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester, and then directly transfers the ubiquitin to targeted substrates. A cysteine residue is required for ubiquitin-thiolester formation. Human thyroid receptor interacting protein 12, which also contains this domain, is a component of an ATP-dependent multisubunit protein that interacts with the ligand binding domain of the thyroid hormone receptor. It could be an E3 ubiquitin-protein ligase. Human ubiquitin-protein ligase E3A interacts with the E6 protein of the cancer-associated Human papillomavirus type 16 and Human papillomavirus type 18. The E6/E6-AP complex binds to and targets the P53 tumour-suppressor protein for ubiquitin-mediated proteolysis.; GO: 0016881 acid-amino acid ligase activity, 0006464 protein modification process, 0005622 intracellular; PDB: 3TUG_A 1ZVD_A 1C4Z_C 1D5F_B 1ND7_A 2XBB_A 2XBF_A 3PT3_A 3G1N_B 3H1D_A ....
Probab=100.00 E-value=1.1e-64 Score=572.20 Aligned_cols=304 Identities=44% Similarity=0.729 Sum_probs=256.9
Q ss_pred HHHHHHhhcccCCCceecC-CCceeeCCCCC------cchhhHHHHHHHHHHHHHHHHHcCCcccccCcHHHHHhhh-cc
Q 001698 719 ENITRAAFDVQYGLFKETS-DHLLYPNPGSG------MIHEQHLQFFHFLGILLAKAMFEGILVDIPFATFFLSKLK-QK 790 (1026)
Q Consensus 719 ~~l~~e~~~p~~glF~~~~-~~~l~pnp~s~------~~~~~~l~~f~flG~llg~Al~~~~~l~l~f~~~f~k~Ll-~~ 790 (1026)
++|++|+|+|++|||..++ ++.++|||... ...+.++++|+++|+++|+||++|.+++++||++|||+|+ |.
T Consensus 1 ~l~~~el~~~~~~lF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~lig~ai~~~~~l~~~f~~~~~k~l~~g~ 80 (317)
T PF00632_consen 1 TLLCKELFDPNLGLFYQTSNNGLFWPNPNSNRDSPSPASSEEHLKMFRFLGRLIGKAIRNGIPLPLPFSPAFWKYLLSGE 80 (317)
T ss_dssp HHHHHHHTSGGGSSEESSTTTCEEEEECCH----TTGGGSTTHHHHHHHHHHHHHHHHHTTS-ESSEB-HHHHHHHT-T-
T ss_pred CHHHHHhcCccCCCceEcCCCCEEeCCCcccccccccccCHHHHHHHHHHHHHHHHHHHcCCccccCcCHHHHHHHhcCC
Confidence 5799999999999997665 55677887521 1234678899999999999999999999999999999999 99
Q ss_pred CCCCCCCCCCCHHhhhhhHHhhcccc---cccccceeEEEEec-cCCcceeeeccCCCcccccChhhHHHHHHHHhhhHh
Q 001698 791 YNYLNDLPSLDPELYRHLIFLKHYEA---DISELELYFVILNN-EYGEQTEEELLPGGKNIRVTNENVITFIHLVSNHRL 866 (1026)
Q Consensus 791 ~~~l~DL~~~Dp~l~~sL~~l~~~~~---dv~~l~L~F~~~~~-~~g~~~~~eL~p~G~~i~VT~~Nk~eYV~~~~~~~l 866 (1026)
+++++|++++||+++++|+++++++. ++++++++|++... ..|...++||+|||++++||.+||.+||+++++|++
T Consensus 81 ~~t~~Dl~~iD~~~~~sl~~l~~~~~~~~~~~~l~l~F~~~~~~~~~~~~~~eL~~~G~~~~Vt~~N~~eyv~~~~~~~l 160 (317)
T PF00632_consen 81 PLTLEDLEEIDPELYKSLKKLLDMDNDEEDVEDLDLTFSVPSSSGGGQVEEVELIPGGSNIPVTNENKEEYVRLLAQYRL 160 (317)
T ss_dssp ---HHHHHCCSHHHHHHHHHHHHSHSGSCTTSGCTEBSEEEEEECTTEEEEEESSTTGGGSB-TTTTHHHHHHHHHHHHH
T ss_pred CCccccchhcCchhhcchhhheeccccccceeecceEEEEecccccCceeEeeecCCCcccccchhhhhHHHHhhhhhhc
Confidence 99999999999999999999997653 36789999998643 355667899999999999999999999999999999
Q ss_pred chhHHHHHHHHHHhhccccchhHHhhccHHHHHHhHcCCCCCCCHHHHhhcccccCccCCCchHHHHHHHHHhcCCHHHH
Q 001698 867 NFQIRQQSSHFLRGFQQLIQKDWIDMFNEHELQLLISGSLDSLDFDDLRQNTNYVGGYHSEHYVIEMFWEVLKSFSLENQ 946 (1026)
Q Consensus 867 ~~~i~~q~~af~~Gf~~vi~~~~l~~F~~~EL~~li~G~~~~id~~dl~~~t~y~~gy~~~~~~I~~FW~vl~~~s~eer 946 (1026)
+++++.|++||++||.+|+|..++++|+|+||+.++||.++.||+++|+++++|++||++++++|+|||+++++||+++|
T Consensus 161 ~~~~~~~~~~~r~Gf~~vi~~~~l~~f~~~eL~~l~~G~~~~i~~~~l~~~~~~~~g~~~~~~~i~~fw~vl~~~s~~~~ 240 (317)
T PF00632_consen 161 NESVKKQLEAFRKGFYSVIPLELLSLFSPEELERLLCGSPEPIDVEDLKSNTRYEGGYTESSPVIQWFWEVLEEFSQEER 240 (317)
T ss_dssp TTTTHHHHHHHHHHHHHHSSHHHHTTSSHHHHHHHHHCBSS---HHHHHHTEEEESSS-TTSHHHHHHHHHHHHS-HHHH
T ss_pred ccccchhHHHHhcchhhcchhHHHHcCCHHHHHHHhcCccccCCHHHHHhcccchhccccccceeeEEeeeeccCCHHHh
Confidence 99999999999999999999999999999999999999864599999999999999999999999999999999999999
Q ss_pred hhcceeecCCCCCCCCCcccCCCceeEeecCCCCCCcCCCCCceeccccCeeccCCCCCHHHHHHHHHHHHHcC-CCccC
Q 001698 947 KKFLKFVTGCSRGPLLGFKYLEPLFCIQRAAGSASEEALDRLPTSATCMNLLKLPPYRSKEQMSTKLLYAINAE-AGFDL 1025 (1026)
Q Consensus 947 ~~fL~FvTG~~r~P~~Gf~~L~p~f~i~~~~~~~~~~~~~~LP~A~TCfn~L~LP~Yss~e~l~ekL~~AI~~~-~GF~L 1025 (1026)
++||+|+||++|+|++||+.++|+|+|+..+.. ++++||+||||||.|+||.|+|+|+||+||++||+++ +||+|
T Consensus 241 ~~fL~F~TG~~~lP~~G~~~l~~~i~i~~~~~~----~~~~LP~a~TCf~~L~LP~Yss~e~l~~kL~~Ai~~~~~gF~~ 316 (317)
T PF00632_consen 241 RKFLRFVTGSSRLPPGGFSNLNPKITIQFSDDS----PDDRLPTAHTCFNTLKLPRYSSKEILREKLLYAIENGQEGFGL 316 (317)
T ss_dssp HHHHHHHHSSSSB-TTGGGGGE-EEEEEEESC-----STTS--EEEGGGTEEEEEE-SSHHHHHHHHHHHHHHT------
T ss_pred heeEEEecCCCCCCccccccccceeEEeecCCC----ccccCceecCcCCEEECCCCCCHHHHHHHHHHHHHcCCCCcCc
Confidence 999999999999999999999999999987642 2579999999999999999999999999999999999 89999
Q ss_pred C
Q 001698 1026 S 1026 (1026)
Q Consensus 1026 s 1026 (1026)
|
T Consensus 317 s 317 (317)
T PF00632_consen 317 S 317 (317)
T ss_dssp -
T ss_pred C
Confidence 8
No 10
>KOG0940 consensus Ubiquitin protein ligase RSP5/NEDD4 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.2e-50 Score=449.96 Aligned_cols=338 Identities=35% Similarity=0.642 Sum_probs=318.7
Q ss_pred cceeEEEcCCchHHHHHHHHhcCCccccCCcEEEEEEeccCcccccccCCCccHHHHHHHHHHhhcccCCCceecCC-Cc
Q 001698 662 TRSRFRIRRDHILEDAYSQMSTMSEEDLRGAIRVTFVNELGVEEAGIDGGGIFKDFMENITRAAFDVQYGLFKETSD-HL 740 (1026)
Q Consensus 662 ~~~~i~VrR~~ileda~~~l~~~~~~~lk~~l~V~F~~e~G~~E~giD~GG~~rEff~~l~~e~~~p~~glF~~~~~-~~ 740 (1026)
...+++|+|++++||+|+++...++.++|+.+.+.|.+ |+|.|.||+.||||..+++++|+|.+++|..+.+ ..
T Consensus 15 ~~~~~~~~~~~~~e~~f~~iM~~~~~~~~~~l~~~~~~-----ee~ldy~glprewf~~lS~e~~~p~~~~~~~~~~~~t 89 (358)
T KOG0940|consen 15 QQSHHKVDRDHLLEDSFNQIMNPKPSDLQKRLMREFKG-----EEGLDYGGLPREWFFLLSHEGFNPWYGLFQHSRKDYT 89 (358)
T ss_pred ceeEEEechhhhHHHHHHHHhCCCchhhhhcceeeccc-----ccccccCCCCcceeeeeccccCCcceeeeeecccccc
Confidence 34589999999999999999999999999999999999 7899999999999999999999999999999887 49
Q ss_pred eeeCCCCCcchhhHHHHHHHHHHHHHHHHHcCCcccccCcHHHHHhhhccCCCCCCCCCCCHHhhhhhHHhhcccccccc
Q 001698 741 LYPNPGSGMIHEQHLQFFHFLGILLAKAMFEGILVDIPFATFFLSKLKQKYNYLNDLPSLDPELYRHLIFLKHYEADISE 820 (1026)
Q Consensus 741 l~pnp~s~~~~~~~l~~f~flG~llg~Al~~~~~l~l~f~~~f~k~Ll~~~~~l~DL~~~Dp~l~~sL~~l~~~~~dv~~ 820 (1026)
++.+|.++ .+++|+.+|.|+|+.+|+|++++..++-- -.+|||.+++++.+++|.+.+|++.|+++.++++++ +..
T Consensus 90 lq~~P~sg-~~p~~l~~~~~vg~~~~l~~~h~~~~~~g-~r~F~~~i~~ktt~ldd~e~~d~e~~~s~~~~~en~--~~~ 165 (358)
T KOG0940|consen 90 LWLNPRSG-VNPGHLTYFRFVGGVLALAGWHMRFTDTG-QRPFYKHILKKTTTLDDREAVDPEFYNSLTWIREND--PTN 165 (358)
T ss_pred cccCCccC-CCCCcccccccccccccccceeeEecCCC-ceehhhhhhcCccccCchhhcCccccccccccccCC--ccc
Confidence 99999998 78999999999999999999999998886 889999999999999999999999999999998743 333
Q ss_pred cceeEEEEeccCCcceeeeccCCCcccccChhhHHHHHHHHhhhHhchhHHHHHHHHHHhhccccchhHHhhccHHHHHH
Q 001698 821 LELYFVILNNEYGEQTEEELLPGGKNIRVTNENVITFIHLVSNHRLNFQIRQQSSHFLRGFQQLIQKDWIDMFNEHELQL 900 (1026)
Q Consensus 821 l~L~F~~~~~~~g~~~~~eL~p~G~~i~VT~~Nk~eYV~~~~~~~l~~~i~~q~~af~~Gf~~vi~~~~l~~F~~~EL~~ 900 (1026)
+++|.++...+|+....+|+|||.++.||.+|+++||.++.+ ++...+.+|.++|.+||..++|..++++|.+.|++.
T Consensus 166 -~~~f~~~~~~~g~~~~~~l~p~g~~~~v~~~n~~~yi~~l~~-r~~~~~~~q~~~l~~~~~~~~p~~~~~~~~e~~~e~ 243 (358)
T KOG0940|consen 166 -DLTFSVESEVLGQITTQELKPNGANIQVTEENKKEYIMLLQN-RFERGIQEQLKALLQGFNELLPQSLLRIFDEMELEL 243 (358)
T ss_pred -chhhhcchhhcCCccceeecCCCcccccccccHHHHHHHHHH-HHHHHHHHHHHHHhccccccCCcccccccchhhHHH
Confidence 999999999999999999999999999999999999999999 889999999999999999999999999999999999
Q ss_pred hHcCCCCCCCHHHHhhcccccCccCCCchHHHHHHHHHhcCCHHHHhhcceeecCCCCCCCCCcccCCC-----ceeEee
Q 001698 901 LISGSLDSLDFDDLRQNTNYVGGYHSEHYVIEMFWEVLKSFSLENQKKFLKFVTGCSRGPLLGFKYLEP-----LFCIQR 975 (1026)
Q Consensus 901 li~G~~~~id~~dl~~~t~y~~gy~~~~~~I~~FW~vl~~~s~eer~~fL~FvTG~~r~P~~Gf~~L~p-----~f~i~~ 975 (1026)
++||..+ +|+++|++++.|. +|+.+|++|.|||+.+.++++++|.+.++|+||++++|..||+.+.. .|+|.+
T Consensus 244 ~~~~~~~-~~~~d~~~~t~~~-~~~~~~~~i~wf~~~v~~~~~~~r~r~l~~~tg~~~vp~~~~~~l~~s~~~~~~~ie~ 321 (358)
T KOG0940|consen 244 ALSGDPE-IDVNDWKQNTEYR-GYSETDRQIDWFWNNVDEMDNEERIRLLQFVTGTSRVPVEGFAILSGSNGPRKFCIEK 321 (358)
T ss_pred HhcCCcc-cchhHHhhhcccc-cccCCccccHHHHHhhhhcChHHHHhhhhccCCCccccccchhhccCCCccCceeecC
Confidence 9999875 9999999999998 89999999999999999999999999999999999999999999875 688887
Q ss_pred cCCCCCCcCCCCCceeccccCeeccCCCCCHHHHHHHHHHHHH
Q 001698 976 AAGSASEEALDRLPTSATCMNLLKLPPYRSKEQMSTKLLYAIN 1018 (1026)
Q Consensus 976 ~~~~~~~~~~~~LP~A~TCfn~L~LP~Yss~e~l~ekL~~AI~ 1018 (1026)
.+ +.+++|.+|||||.|.+|.|.+++.|++|+..||+
T Consensus 322 ~~------~~~~~p~~htcfnrld~~~~~s~~~L~~kl~~ai~ 358 (358)
T KOG0940|consen 322 WG------KSTQLPRSHTCFNRLDLPPYESYEPLREKLLLAIE 358 (358)
T ss_pred cc------cccccchhcccccccccccccchhHHHHHHHHhcC
Confidence 33 35799999999999999999999999999999984
No 11
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.1e-37 Score=358.06 Aligned_cols=263 Identities=25% Similarity=0.412 Sum_probs=220.0
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCcccccCcHHHHHhhhccCCCCCCCCCCCHHhhhhhHHhhcc------cccccccceeE
Q 001698 752 EQHLQFFHFLGILLAKAMFEGILVDIPFATFFLSKLKQKYNYLNDLPSLDPELYRHLIFLKHY------EADISELELYF 825 (1026)
Q Consensus 752 ~~~l~~f~flG~llg~Al~~~~~l~l~f~~~f~k~Ll~~~~~l~DL~~~Dp~l~~sL~~l~~~------~~dv~~l~L~F 825 (1026)
+-.+..|+-+|||+|.|+..|-+.++.|+..+||.++|.++.+.|+..+||.+|++|..|-.. +.|+..+++.|
T Consensus 2739 ~~RLaafRniGRIlGiCL~Qgdi~PirfnRHifk~iL~l~icW~Df~FfDPVlfenLRaLfkAhpsSd~DadFS~md~aa 2818 (3015)
T KOG0943|consen 2739 EARLAAFRNIGRILGICLLQGDICPIRFNRHIFKVILGLKICWHDFAFFDPVLFENLRALFKAHPSSDADADFSAMDLAA 2818 (3015)
T ss_pred HHHHHHHHhhhhHhhhhhhcCcccceeehhHHHHHHhcCceehhhhccccHHHHHHHHHHHhcCCcccccchhhHHHHhh
Confidence 456788999999999999999999999999999999999999999999999999999987432 12334445555
Q ss_pred EEEeccCCcceeeeccCCCcccccChhhHHHHHHHHhhhHhchhHHHHHHHHHHhhccccchhHHhhccHHHHHHhHcCC
Q 001698 826 VILNNEYGEQTEEELLPGGKNIRVTNENVITFIHLVSNHRLNFQIRQQSSHFLRGFQQLIQKDWIDMFNEHELQLLISGS 905 (1026)
Q Consensus 826 ~~~~~~~g~~~~~eL~p~G~~i~VT~~Nk~eYV~~~~~~~l~~~i~~q~~af~~Gf~~vi~~~~l~~F~~~EL~~li~G~ 905 (1026)
..+--.-.+..+|+|||||.+|+||.+|+.|||.+|++++|...-...++|+|+|+..|||.+.|.-.+++++.++|||.
T Consensus 2819 ~gdlckee~a~qVeL~PNGdeilVnkdNViEYV~KYAE~~llgk~~i~feAiReGiLDViPenmL~~LT~EDfRLiicG~ 2898 (3015)
T KOG0943|consen 2819 AGDLCKEEGAGQVELIPNGDEILVNKDNVIEYVRKYAEHRLLGKAEIPFEAIREGILDVIPENMLEDLTAEDFRLIICGC 2898 (3015)
T ss_pred ccchhhhcCceeEEEecCCceeeecchhHHHHHHHHHHhhhheeeeccHHHHHHhHHhhcchhhhcccCHhHheeeeecc
Confidence 43210111345799999999999999999999999999999976677899999999999999999999999999999998
Q ss_pred CCCCCHHHHhhcccccCccCCCc----hHHHHHHHHHhcCCHHHHhhcceeecCCCCCCCCC--cccCCCceeEeecCCC
Q 001698 906 LDSLDFDDLRQNTNYVGGYHSEH----YVIEMFWEVLKSFSLENQKKFLKFVTGCSRGPLLG--FKYLEPLFCIQRAAGS 979 (1026)
Q Consensus 906 ~~~id~~dl~~~t~y~~gy~~~~----~~I~~FW~vl~~~s~eer~~fL~FvTG~~r~P~~G--f~~L~p~f~i~~~~~~ 979 (1026)
.+ +++.-|..+|-|-..-.++. +.-+|||+|+++|+..||..+..|+|||+.+|..| |... +.+.|+ +.
T Consensus 2899 ee-VniqmL~e~TgFlDES~anaEkL~qFKqWFWqiiEkfs~qEkQdLVfFWTgSPaLPAa~e~~p~~-aSimiR--P~- 2973 (3015)
T KOG0943|consen 2899 EE-VNIQMLIEFTGFLDESGANAEKLLQFKQWFWQIIEKFSMQEKQDLVFFWTGSPALPAAEEGFPPM-ASIMIR--PP- 2973 (3015)
T ss_pred cc-eehhHhhhhccccccccccHHHHHHHHHHHHHHHHHHhhhhhccEEEEecCCCCCCccccCCCCC-Cceeec--Cc-
Confidence 65 99999999997653222222 35679999999999999999999999999999975 5432 344444 22
Q ss_pred CCCcCCCCCceeccccCeeccCCCCCHHHHHHHHHHHHHcCC-Cc
Q 001698 980 ASEEALDRLPTSATCMNLLKLPPYRSKEQMSTKLLYAINAEA-GF 1023 (1026)
Q Consensus 980 ~~~~~~~~LP~A~TCfn~L~LP~Yss~e~l~ekL~~AI~~~~-GF 1023 (1026)
++..||||+||...|..|.|+||.+||.||+.||.... ||
T Consensus 2974 ----dD~fLPTANTCISRLYVPlYSSKqiLkqKLLLAIKaKNFGF 3014 (3015)
T KOG0943|consen 2974 ----DDQFLPTANTCISRLYVPLYSSKQILKQKLLLAIKAKNFGF 3014 (3015)
T ss_pred ----ccccCCcccchhhheeeechhhHHHHHHHHHHhhhcccccc
Confidence 25799999999999999999999999999999998753 55
No 12
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K. The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....
Probab=97.61 E-value=6.3e-05 Score=49.67 Aligned_cols=21 Identities=38% Similarity=0.351 Sum_probs=18.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHH
Q 001698 46 NHAAIKIQKCFRGKKAMEIEH 66 (1026)
Q Consensus 46 ~~aAi~IQ~~~Rg~~~r~~~~ 66 (1026)
.+||++||++||||++|++.+
T Consensus 1 ~~aai~iQ~~~R~~~~Rk~~k 21 (21)
T PF00612_consen 1 RKAAIIIQSYWRGYLARKRYK 21 (21)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhcC
Confidence 369999999999999999864
No 13
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues. Calmodulin-binding motif.
Probab=97.02 E-value=0.0005 Score=47.93 Aligned_cols=22 Identities=36% Similarity=0.321 Sum_probs=19.7
Q ss_pred HhhhHHHHHHHHHHHHHHHHHH
Q 001698 45 QNHAAIKIQKCFRGKKAMEIEH 66 (1026)
Q Consensus 45 r~~aAi~IQ~~~Rg~~~r~~~~ 66 (1026)
.+++|++||++||||++|++.+
T Consensus 2 ~~~aa~~IQa~~Rg~~~r~~y~ 23 (26)
T smart00015 2 LTRAAIIIQAAWRGYLARKRYK 23 (26)
T ss_pred HHHHHHHHHHHHHHHHHHHhhh
Confidence 5689999999999999999874
No 14
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=76.25 E-value=2.8 Score=48.24 Aligned_cols=23 Identities=35% Similarity=0.286 Sum_probs=20.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHH
Q 001698 46 NHAAIKIQKCFRGKKAMEIEHSK 68 (1026)
Q Consensus 46 ~~aAi~IQ~~~Rg~~~r~~~~~~ 68 (1026)
-+||+.||+|.|||.||..+|+.
T Consensus 17 ikaAilIQkWYRr~~ARle~rrr 39 (631)
T KOG0377|consen 17 IKAAILIQKWYRRYEARLEARRR 39 (631)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 78999999999999999887764
No 15
>PTZ00014 myosin-A; Provisional
Probab=72.06 E-value=6.3 Score=50.53 Aligned_cols=35 Identities=9% Similarity=-0.037 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 001698 35 ERNRRLYLRRQNHAAIKIQKCFRGKKAMEIEHSKV 69 (1026)
Q Consensus 35 eRe~R~~~Rrr~~aAi~IQ~~~Rg~~~r~~~~~~~ 69 (1026)
|..+|+...+-...|..|||+||||++|++.++..
T Consensus 766 e~~~~~~~~~~~~~~~~iq~~~r~~~~r~~~~~~~ 800 (821)
T PTZ00014 766 TQIQREKLAAWEPLVSVLEALILKIKKKRKVRKNI 800 (821)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444567899999999999999877763
No 16
>KOG1419 consensus Voltage-gated K+ channel KCNQ [Inorganic ion transport and metabolism]
Probab=64.03 E-value=6 Score=47.13 Aligned_cols=34 Identities=26% Similarity=0.279 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 001698 28 LLEQTRLERNRRLYLRRQNHAAIKIQKCFRGKKA 61 (1026)
Q Consensus 28 lL~qar~eRe~R~~~Rrr~~aAi~IQ~~~Rg~~~ 61 (1026)
|=-++||+-++.+-.|||+.||-.||++||-|.+
T Consensus 322 fALKVQeq~RQKHf~rrr~pAA~LIQc~WR~yaa 355 (654)
T KOG1419|consen 322 FALKVQEQHRQKHFNRRRNPAASLIQCAWRYYAA 355 (654)
T ss_pred hhhhhHHHHHHHHHHhhcchHHHHHHHHHHHHhc
Confidence 4457888888889999999999999999998875
No 17
>PTZ00014 myosin-A; Provisional
Probab=62.46 E-value=11 Score=48.34 Aligned_cols=27 Identities=15% Similarity=0.226 Sum_probs=21.4
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 001698 39 RLYLRRQNHAAIKIQKCFRGKKAMEIE 65 (1026)
Q Consensus 39 R~~~Rrr~~aAi~IQ~~~Rg~~~r~~~ 65 (1026)
|..-+++..|++.||++||||+++++.
T Consensus 793 r~~~~~~~~~~~~iQ~~~R~~l~~~~~ 819 (821)
T PTZ00014 793 KRKVRKNIKSLVRIQAHLRRHLVIAEI 819 (821)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 444455577999999999999999764
No 18
>KOG0164 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=51.68 E-value=24 Score=43.40 Aligned_cols=27 Identities=22% Similarity=0.134 Sum_probs=21.6
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 001698 44 RQNHAAIKIQKCFRGKKAMEIEHSKVR 70 (1026)
Q Consensus 44 rr~~aAi~IQ~~~Rg~~~r~~~~~~~R 70 (1026)
+...-|..||+.||||++|.+.++-.+
T Consensus 694 ~l~~lvtllQK~~RG~~~R~ry~rmka 720 (1001)
T KOG0164|consen 694 RLPSLVTLLQKAWRGWLARQRYRRMKA 720 (1001)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445678999999999999988876543
No 19
>PF08763 Ca_chan_IQ: Voltage gated calcium channel IQ domain; InterPro: IPR014873 Ca2+ ions are unique in that they not only carry charge but they are also the most widely used of diffusible second messengers. Voltage-dependent Ca2+ channels (VDCC) are a family of molecules that allow cells to couple electrical activity to intracellular Ca2+ signalling. The opening and closing of these channels by depolarizing stimuli, such as action potentials, allows Ca2+ ions to enter neurons down a steep electrochemical gradient, producing transient intracellular Ca2+ signals. Many of the processes that occur in neurons, including transmitter release, gene transcription and metabolism are controlled by Ca2+ influx occurring simultaneously at different cellular locales. The pore is formed by the alpha-1 subunit which incorporates the conduction pore, the voltage sensor and gating apparatus, and the known sites of channel regulation by second messengers, drugs, and toxins []. The activity of this pore is modulated by 4 tightly-coupled subunits: an intracellular beta subunit; a transmembrane gamma subunit; and a disulphide-linked complex of alpha-2 and delta subunits, which are proteolytically cleaved from the same gene product. Properties of the protein including gating voltage-dependence, G protein modulation and kinase susceptibility can be influenced by these subunits. Voltage-gated calcium channels are classified as T, L, N, P, Q and R, and are distinguished by their sensitivity to pharmacological blocks, single-channel conductance kinetics, and voltage-dependence. On the basis of their voltage activation properties, the voltage-gated calcium classes can be further divided into two broad groups: the low (T-type) and high (L, N, P, Q and R-type) threshold-activated channels. The voltage-gated calcium channel alpha 1 subunit contains an IQ domain, named for its isoleucine-glutamine (IQ) motif, which interacts with hydrophobic pockets of Ca2+/calmodulin []. The interaction regulates two self-regulatory calcium dependent feedback mechanisms, calcium dependent inactivation (CDI), and calcium-dependent facilitation (CDF). ; PDB: 3OXQ_F 2F3Z_B 3G43_E 2F3Y_B 2BE6_D 3DVM_B 3BXK_D 2VAY_B 3DVK_B 3BXL_B ....
Probab=50.27 E-value=16 Score=27.41 Aligned_cols=22 Identities=27% Similarity=0.289 Sum_probs=17.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH
Q 001698 47 HAAIKIQKCFRGKKAMEIEHSK 68 (1026)
Q Consensus 47 ~aAi~IQ~~~Rg~~~r~~~~~~ 68 (1026)
-||..||-+||.|..|+.....
T Consensus 10 YAt~lI~dyfr~~K~rk~~~~~ 31 (35)
T PF08763_consen 10 YATLLIQDYFRQFKKRKEQEQQ 31 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4899999999999999875443
No 20
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=44.71 E-value=17 Score=44.68 Aligned_cols=28 Identities=18% Similarity=0.221 Sum_probs=23.6
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 001698 43 RRQNHAAIKIQKCFRGKKAMEIEHSKVR 70 (1026)
Q Consensus 43 Rrr~~aAi~IQ~~~Rg~~~r~~~~~~~R 70 (1026)
.=|.++.+++|++.|||++|++.+..+-
T Consensus 810 ~yRae~v~k~Q~~~Rg~L~rkr~~~ri~ 837 (1259)
T KOG0163|consen 810 IYRAECVLKAQRIARGYLARKRHRPRIA 837 (1259)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhchHHH
Confidence 3466789999999999999999887663
No 21
>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton]
Probab=39.62 E-value=46 Score=42.65 Aligned_cols=36 Identities=25% Similarity=0.146 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 001698 28 LLEQTRLERNRRLYLRRQNHAAIKIQKCFRGKKAME 63 (1026)
Q Consensus 28 lL~qar~eRe~R~~~Rrr~~aAi~IQ~~~Rg~~~r~ 63 (1026)
++++.=.-+.-|..--+..++++.||+++||+++|+
T Consensus 678 ~iq~~~r~~~~r~~f~~~r~~~~~~Q~~~rG~~~r~ 713 (862)
T KOG0160|consen 678 LIQRQIRGYLARKKFLQLRSAVIIIQAYSRGVLARR 713 (862)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 344444444444444444455555555555555555
No 22
>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton]
Probab=33.42 E-value=58 Score=41.79 Aligned_cols=30 Identities=23% Similarity=0.118 Sum_probs=23.7
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001698 45 QNHAAIKIQKCFRGKKAMEIEHSKVREQFF 74 (1026)
Q Consensus 45 r~~aAi~IQ~~~Rg~~~r~~~~~~~R~efd 74 (1026)
+..|||.||+.||+|..|++.+..+...+-
T Consensus 717 ~~~aai~~q~~~r~~~~r~~y~~~~~~~~~ 746 (862)
T KOG0160|consen 717 REAAAIGIQKECRSYLNRRRYRALIPASIT 746 (862)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 778888888888888888887777776665
No 23
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=23.38 E-value=1.3e+03 Score=27.56 Aligned_cols=173 Identities=13% Similarity=0.177 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHHHhhhhhhcccccCCCCCCCCchHHHHHHHHHhhcCCchhhHHHHHHHHh---------------cchH
Q 001698 151 VKKFAFACIQAVHQNRKELKDQLFVTPEESNTPPTLLLEAVVFLIDSRLPWTCKVVSYLLE---------------RNVF 215 (1026)
Q Consensus 151 iKkll~lC~~~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~lv~l~~~~~~w~~~i~~yL~q---------------~g~y 215 (1026)
++.++.-.+..+.... +.++.+ ..--.|+++.+..+...|....++.+|++ |..|
T Consensus 24 ~~~ll~~Lf~~i~~~~---------s~ENey-lMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kNPsnP~FnHylF 93 (435)
T PF03378_consen 24 AQQLLQNLFALIEKPG---------SAENEY-LMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSKNPSNPRFNHYLF 93 (435)
T ss_dssp HHHHHHHHHHHHHTT----------STC-HH-HHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS---HHHHHHHH
T ss_pred HHHHHHHHHHHHhcCC---------CccchH-HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhHH
Confidence 4677777777665411 123333 22467788888877778888787777776 7889
Q ss_pred HHHHHHHHhcCCCcccccccCCcchHHH-HHHhhhccccCCCcccCCCCCcc-chhhhhcccchhhhhhhhHHHHHhhcC
Q 001698 216 TLLRELIVTGKESMEIHSSYGRISSLER-VLTLIIPHIGQKPCICPNIDPRW-SFFSQILTIPFLWHLFPYIKEVFATGR 293 (1026)
Q Consensus 216 ~~Lr~ll~~~~~~~~~~~~~~~~~~l~~-ll~l~~~~~~~~~~~~~~~~~~~-~f~~~IlsiP~l~~~~p~~~~~~~~~~ 293 (1026)
.++..+|......... ..+.++. +++....-+... +. ++ .|.-|||+ .+.+.-.+..
T Consensus 94 Esi~~lir~~~~~~~~-----~v~~~E~~L~P~f~~ILq~d------V~-EF~PYvfQIla---------~Lle~~~~~~ 152 (435)
T PF03378_consen 94 ESIGALIRFVCEADPE-----AVSQFEEALFPPFQEILQQD------VQ-EFIPYVFQILA---------QLLELRPSSP 152 (435)
T ss_dssp HHHHHHHHHS-GGGHH--------HHHHHHHHHHHHHHHTT-------T-TTHHHHHHHHH---------HHHHHSS--S
T ss_pred HHHHHHHHhccCCChh-----HHHHHHHHHHHHHHHHHHHH------HH-HHHHHHHHHHH---------HHHHcCCCCC
Confidence 9999998864431111 1234444 333322111110 00 11 34445554 3322222334
Q ss_pred CchhhHHHHHHHHhhhcccCCccccCCcchHHHHHHHHHHhhhhhcCCCCCcccchhhHHHHHHHHHhh
Q 001698 294 TSQHYIHQMALCVQNHANVLPHEVSMELPGYACLLGNILETAGVALSQPDCSFEMGVDLAAITTFLLKA 362 (1026)
Q Consensus 294 l~~~~~~~~~~~l~~~~~~~~~~~s~~~p~~~~lL~Nl~~l~~~~l~~~~~~~~~~~~~v~v~~~lL~~ 362 (1026)
+++.|.+-...++. ..+ =+....+|....||.+.+.-....+... ..+..++.|..+|+++
T Consensus 153 ~p~~y~~L~~~Ll~---p~l-We~~gniPalvrLL~a~i~k~~~~i~~~----~~l~~iLgvFQkLi~s 213 (435)
T PF03378_consen 153 LPDAYKQLFPPLLS---PAL-WERRGNIPALVRLLQAYIKKDPSFIVAN----NQLEPILGVFQKLIAS 213 (435)
T ss_dssp --TTTGGGHHHHTS---GGG-GGSTTTHHHHHHHHHHHHHHHGGG--------S-CHHHHHHHHHHHT-
T ss_pred CcHHHHHHHHHHcC---cch-hccCCCcCcHHHHHHHHHHhCchhhcch----hhHHHHHHHHHHHHCC
Confidence 66666442222211 111 0223445666677777775544322211 2223567788888877
No 24
>PF08513 LisH: LisH; InterPro: IPR013720 The LisH motif is found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions. The recently solved structure of the LisH domain in the N-terminal region of LIS1 depicted it as a novel dimerization motif, and that other structural elements are likely to play an important role in dimerisation [, , ]. The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex []. ; PDB: 2XTE_L 2XTC_B 2XTD_A 1UUJ_B.
Probab=22.39 E-value=1e+02 Score=21.66 Aligned_cols=21 Identities=14% Similarity=0.178 Sum_probs=16.0
Q ss_pred HHHHHHHHhcchHHHHHHHHH
Q 001698 203 CKVVSYLLERNVFTLLRELIV 223 (1026)
Q Consensus 203 ~~i~~yL~q~g~y~~Lr~ll~ 223 (1026)
.-|+.||+++||..+-..+..
T Consensus 5 ~lI~~YL~~~Gy~~tA~~f~~ 25 (27)
T PF08513_consen 5 QLIYDYLVENGYKETAKAFAK 25 (27)
T ss_dssp HHHHHHHHHCT-HHHHHHHHH
T ss_pred HHHHHHHHHCCcHHHHHHHHh
Confidence 348999999999988776654
No 25
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=20.86 E-value=1.2e+02 Score=37.75 Aligned_cols=30 Identities=33% Similarity=0.331 Sum_probs=21.9
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001698 43 RRQNHAAIKIQKCFRGKKAMEIEHSKVREQF 73 (1026)
Q Consensus 43 Rrr~~aAi~IQ~~~Rg~~~r~~~~~~~R~ef 73 (1026)
|+=..=|..||+-||+|++||+ ..++|++=
T Consensus 693 r~~d~~A~~IQkAWRrfv~rrk-y~k~ree~ 722 (1106)
T KOG0162|consen 693 RKWDGMARRIQKAWRRFVARRK-YEKMREEA 722 (1106)
T ss_pred HHhhHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 3445678899999999999984 34455543
Done!