Query 001698
Match_columns 1026
No_of_seqs 346 out of 1535
Neff 7.2
Searched_HMMs 29240
Date Tue Mar 26 16:24:32 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001698.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_995-998//hhsearch_pdb/001698hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3h1d_A E3 ubiquitin-protein li 1.0 1 1 754.5 29.0 384 625-1026 14-405 (405)
2 1zvd_A SMAD ubiquitination reg 1.0 1 1 747.0 28.3 371 635-1026 2-380 (380)
3 2oni_A E3 ubiquitin-protein li 1.0 1 1 740.4 27.0 374 626-1019 11-392 (392)
4 3olm_A E3 ubiquitin-protein li 1.0 1 1 734.6 28.3 370 633-1025 51-428 (429)
5 1nd7_A WW domain-containing pr 1.0 1 1 728.9 30.7 365 636-1021 3-374 (374)
6 1c4z_A E6AP, ubiquitin-protein 1.0 1 1 725.4 21.5 347 663-1026 5-358 (358)
7 3pt3_A E3 ubiquitin-protein li 1.0 1 1 263.1 6.7 109 908-1025 3-117 (118)
8 1n2d_C IQ2 and IQ3 motifs from 1.0 1 1 38.1 4.6 23 43-65 25-47 (48)
9 2dfs_A Myosin-5A; myosin-V, in 1.0 1 1 35.9 6.5 72 710-786 636-711 (1080)
10 3gn4_A Myosin-VI; unconvention 1.0 1 1 35.3 4.2 34 41-74 40-73 (148)
No 1
>3h1d_A E3 ubiquitin-protein ligase HUWE1; E3ligase, HECT, LOBE, alternative splicing, chromosomal rearrangement, cytoplasm, differentiation; 1.89A {Homo sapiens} PDB: 3g1n_A
Probab=1.00 E-value=1 Score=754.51 Aligned_cols=384 Identities=36% Similarity=0.634 Sum_probs=349.9
Q ss_pred HHHHHCCCCCCCHHCHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCC
Q ss_conf 57632198102401049999999999986029998752102897198559999999924991013773799998336752
Q 001698 625 NEILKQAPFLVPFTSRAKIFQSQLASVRQRHGSHGVFTRSRFRIRRDHILEDAYSQMSTMSEEDLRGAIRVTFVNELGVE 704 (1026)
Q Consensus 625 ~~il~~~Pf~~pf~~rv~~f~~~~~~~r~~~~~~~~~~~~~i~VrR~~iled~~~~l~~~~~~~lk~~l~V~F~~e~G~~ 704 (1026)
.+.+..-|+ ++|+.|+++|+.++.+.+..... ...+++|||++|++|+++++...++.++|++++|+|+|
T Consensus 14 ~~~~~~~~~-~~f~~k~~~F~~~l~~~~~~~~~----~~~~l~VrR~~i~eds~~~l~~~~~~~lk~~l~V~F~g----- 83 (405)
T 3h1d_A 14 LEVLFQGPH-MDFDVKRKYFRQELERLDEGLRK----EDMAVHVRRDHVFEDSYRELHRKSPEEMKNRLYIVFEG----- 83 (405)
T ss_dssp CGGGGCSTT-SCHHHHHHHHHHHHHHHTTTCCC----CEEEEEECGGGHHHHHHHHHTTSCTTGGGSEEEEEETT-----
T ss_pred HHHHHCCCC-CCHHHHHHHHHHHHHHHHCCCCC----CCEEEEEECCHHHHHHHHHHHCCCHHHHHCCEEEEECC-----
T ss_conf 678614987-68899999999999862247889----86699994860799999999715988761666999789-----
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHCCCCCCCEECCC-C-CEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHH
Q ss_conf 1244688760999999999840344798122489-7-3010999986145677799999899999988298025667298
Q 001698 705 EAGIDGGGIFKDFMENITRAAFDVQYGLFKETSD-H-LLYPNPGSGMIHEQHLQFFHFLGILLAKAMFEGILVDIPFATF 782 (1026)
Q Consensus 705 E~GiD~GG~~rEff~~i~~e~~~p~~glF~~~~~-~-~l~pnp~s~~~~~~~l~~f~fiG~llg~ai~~~~~l~l~f~~~ 782 (1026)
|+|+|+||++||||+++++|+|+|++|||..+++ + .++|||.+. ..++++++|+|+|+++|+|||++.++|++||++
T Consensus 84 E~G~D~GG~~rEff~ll~~elf~p~~gLF~~~~~~~~~~~~np~s~-~~~~~l~~f~flGrliG~Al~~~~~ld~~F~~~ 162 (405)
T 3h1d_A 84 EEGQDAGGLLREWYMIISREMFNPMYALFRTSPGDRVTYTINPSSH-ANPNHLSYFKFVGRIVAKAVYDNRLLECYFTRS 162 (405)
T ss_dssp CCSCCCTTHHHHHHHHHHHHTTCGGGTSEEECSSCSSEEEECCC------CHHHHHHHHHHHHHHHHHHTCCCCCEECHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHCCCCCCEEECCCCCEEEEECCCCC-CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHH
T ss_conf 8774787369999999999983986444022268832673077322-575577899988699999993898258776299
Q ss_pred HHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 99852125888898889997754446775201465331100389981667861024314999643137345999999976
Q 001698 783 FLSKLKQKYNYLNDLPSLDPELYRHLIFLKHYEADISELELYFVILNNEYGEQTEEELLPGGKNIRVTNENVITFIHLVS 862 (1026)
Q Consensus 783 f~k~Ll~~~~~l~DL~~lDp~l~~sL~~l~~~~~dve~l~L~F~~~~~~~g~~~~~eL~p~G~~i~VT~~N~~eYI~~~~ 862 (1026)
|||+|+|.+++++||+++||++|++|+++++++.+-.+++++|++..+.+|...++||+|||++|+||++||.+||++++
T Consensus 163 f~K~Llg~~~~l~DL~~~Dp~l~~sL~~ll~~~~~~l~l~ltF~~~~~~~G~~~~veL~p~G~~i~VT~~Nk~eYV~l~~ 242 (405)
T 3h1d_A 163 FYKHILGKSVRYTDMESEDYHFYQGLVYLLENDVSTLGYDLTFSTEVQEFGVAEVRDLKPNGANILVTEENKKEYVHLVC 242 (405)
T ss_dssp HHHHHHTCCCCGGGHHHHCHHHHHHHHHHHHSCGGGSSSCEEEETTTCCEEECCGGGGSSCSSEEECCTTTHHHHHHHHH
T ss_pred HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHCCEEEEEEEEECCCCEEEEEECCCCCCCCCCHHHHHHHHHHHH
T ss_conf 99982699897898987549999998666509855643414899985237862368605789777426676899999999
Q ss_pred HHHHCHHHHHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHCCCCCCCCHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 66860559999999997400035325872036999999671899988978874413236766898369999999992099
Q 001698 863 NHRLNFQIRQQSSHFLRGFQQLIQKDWIDMFNEHELQLLISGSLDSLDFDDLRQNTNYVGGYHSEHYVIEMFWEVLKSFS 942 (1026)
Q Consensus 863 ~~~l~~~i~~q~~af~~Gf~~vip~~~l~~F~~~EL~~li~G~~~~id~~~l~~~t~y~ggy~~~~~~i~~FW~vl~~~s 942 (1026)
+|+++++|+.|++||++||++|||.++|++|+|+||+.++||.++ ||+++|++||.|. ||+++|++|+|||+|+++|+
T Consensus 243 ~~~l~~~v~~q~~aF~~Gf~~Vip~~~L~lF~~~ELe~Li~G~~~-id~~dl~~~t~y~-gy~~~~~~i~~FW~v~~~~s 320 (405)
T 3h1d_A 243 QMRMTGAIRKQLAAFLEGFYEIIPKRLISIFTEQELELLISGLPT-IDIDDLKSNTEYH-KYQSNSIQIQWFWRALRSFD 320 (405)
T ss_dssp HHHHTGGGHHHHHHHHHHHHHHSCHHHHTTSCHHHHHHHHHCCCC-CCHHHHHHTEEEE-SSCTTCHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCC-CCHHHHHHHCCCC-CCCCCCCHHHHHHHHHHHCC
T ss_conf 999987799999999999998702888757999999998488777-9999998308034-88988704744998997499
Q ss_pred HHHHHHCCEEECCCCCCCCCCCCCCCC-----CEEEEECCCCCCCCCCCCCCEECCCCCEECCCCCCCHHHHHHHHHHHH
Q ss_conf 988864143235777778898456797-----235850589989857999950015658130489999999999999999
Q 001698 943 LENQKKFLKFVTGCSRGPLLGFKYLEP-----LFCIQRAAGSASEEALDRLPTSATCMNLLKLPPYRSKEQMSTKLLYAI 1017 (1026)
Q Consensus 943 ~eer~~fL~FvTG~sr~P~~Gf~~l~p-----~f~i~~~~~~~~~~~~~~LPtA~TCfn~L~LP~Y~s~e~l~eKL~~AI 1017 (1026)
+|||++||+|||||+|+|++||+.|+| +|+|++.+.+ +++||+||||||+|+||+|+|+|+|++||++||
T Consensus 321 ~eer~~fL~FvTGs~rlP~~Gf~~L~~~~~~~~f~i~~~~~~-----~~~LP~a~TCfn~L~LP~Yss~e~l~ekL~~AI 395 (405)
T 3h1d_A 321 QADRAKFLQFVTGTSKVPLQGFAALEGMNGIQKFQIHRDDRS-----TDRLPSAHTCFNQLDLPAYESFEKLRHMLLLAI 395 (405)
T ss_dssp HHHHHHHHHHHHSSSCCCTTCGGGCBCSSSBCCEEEEEECSC-----TTSCCEEEGGGTEEEEECCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEECCCC-----CCCCCCCEECCCEEECCCCCCHHHHHHHHHHHH
T ss_conf 999999999972999889875100366678730799517998-----877944000218757989999999999999999
Q ss_pred HCC-CCCCCC
Q ss_conf 718-986689
Q 001698 1018 NAE-AGFDLS 1026 (1026)
Q Consensus 1018 ~~~-~GF~ls 1026 (1026)
++| +||||.
T Consensus 396 ~e~~~GFgla 405 (405)
T 3h1d_A 396 QEASEGFGLA 405 (405)
T ss_dssp HC--------
T ss_pred HHCCCCCCCC
T ss_conf 8077786879
No 2
>1zvd_A SMAD ubiquitination regulatory factor 2; ubiquitin ligasecatalytic mechanism,X-RAY ligase; 2.10A {Homo sapiens}
Probab=1.00 E-value=1 Score=746.98 Aligned_cols=371 Identities=32% Similarity=0.602 Sum_probs=344.9
Q ss_pred CCHHCHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCC
Q ss_conf 24010499999999999860299987521028971985599999999249910137737999983367521244688760
Q 001698 635 VPFTSRAKIFQSQLASVRQRHGSHGVFTRSRFRIRRDHILEDAYSQMSTMSEEDLRGAIRVTFVNELGVEEAGIDGGGIF 714 (1026)
Q Consensus 635 ~pf~~rv~~f~~~~~~~r~~~~~~~~~~~~~i~VrR~~iled~~~~l~~~~~~~lk~~l~V~F~~e~G~~E~GiD~GG~~ 714 (1026)
-+|+.|+++|+.++.+.+.. ....+++|||++|++|+++++...++.++|++++|+|.| |+|+|+|||+
T Consensus 2 r~f~~k~~~f~~~l~~~~~~------~~~~~l~V~R~~i~~ds~~~l~~~~~~~lk~~l~V~F~g-----E~G~D~GG~~ 70 (380)
T 1zvd_A 2 RDLVQKLKILRQELSQQQPQ------AGHCRIEVSREEIFEESYRQVMKMRPKDLWKRLMIKFRG-----EEGLDYGGVA 70 (380)
T ss_dssp CSHHHHHHHHHHHHHHHSCS------SCEEEEEECSTTHHHHHHHHHHTSCGGGGGSEEEEEETT-----CCCSCHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCC------CCCEEEEECCCCHHHHHHHHHHCCCHHHHCCCEEEEECC-----CCCCCCCCCH
T ss_conf 97599999999998742788------986699976677999999999745979846745999778-----7675888518
Q ss_pred HHHHHHHHHHHHCCCCCCCEECCCC--CEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCC
Q ss_conf 9999999998403447981224897--30109999861456777999998999999882980256672989985212588
Q 001698 715 KDFMENITRAAFDVQYGLFKETSDH--LLYPNPGSGMIHEQHLQFFHFLGILLAKAMFEGILVDIPFATFFLSKLKQKYN 792 (1026)
Q Consensus 715 rEff~~i~~e~~~p~~glF~~~~~~--~l~pnp~s~~~~~~~l~~f~fiG~llg~ai~~~~~l~l~f~~~f~k~Ll~~~~ 792 (1026)
||||+++++|+|+|++|||..+.+. .++|||.+. ..++++++|+|+|+++|+|||++.++|++|+++|||+|+|.++
T Consensus 71 rEff~ll~~el~~p~~gLF~~~~~~~~~~~~np~s~-~~~~~l~~f~flG~l~g~al~~~~~ld~~f~~~f~k~llg~~~ 149 (380)
T 1zvd_A 71 REWLYLLSHEMLNPYYGLFQYSRDDIYTLQINPDSA-VNPEHLSYFHFVGRIMGMAVFHGHYIDGGFTLPFYKQLLGKSI 149 (380)
T ss_dssp HHHHHHHHHHHTSGGGSSEEEETTEEEEEEECTTGG-GSTTHHHHHHHHHHHHHHHHHTTCCCCCCCCHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHCCCCCCCEECCCCCCEEECCCCHHH-CCHHHHHHHHHHHHHHHHHHHCCCEECCCCCHHHHHHHHCCCC
T ss_conf 999999999980876787003688871343583221-5867899999858888799817952477587999999957988
Q ss_pred CCCCCCCCCHHHHHHHHHHHCCCCCCCC-CCEEEEEEECCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCHHHH
Q ss_conf 8898889997754446775201465331-100389981667861024314999643137345999999976668605599
Q 001698 793 YLNDLPSLDPELYRHLIFLKHYEADISE-LELYFVILNNEYGEQTEEELLPGGKNIRVTNENVITFIHLVSNHRLNFQIR 871 (1026)
Q Consensus 793 ~l~DL~~lDp~l~~sL~~l~~~~~dve~-l~L~F~~~~~~~g~~~~~eL~p~G~~i~VT~~N~~eYI~~~~~~~l~~~i~ 871 (1026)
+++||+++||++|++|+++++ +|+++ ++++|++..+.+|...++||+|||++|+||.+||.+||+++++|+++++++
T Consensus 150 ~l~Dl~~~Dp~l~~sL~~ll~--~d~~~~l~ltF~~~~~~~g~~~~veL~p~G~~i~VT~~N~~eYv~l~~~~~l~~~i~ 227 (380)
T 1zvd_A 150 TLDDMELVDPDLHNSLVWILE--NDITGVLDHTFCVEHNAYGEIIQHELKPNGKSIPVNEENKKEYVRLYVNWRFLRGIE 227 (380)
T ss_dssp CSTTHHHHCHHHHHHHHHHHH--SCCTTTSCCCSEEEEEETTEEEEEESSTTCCCCCCTTTTHHHHHHHHHHHHHTTTTH
T ss_pred CHHHHHHHCHHHHHHHHHHHH--CCCCCCCCCEEEEEEECCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 778877768999999999870--881000234168863037957678527999777144023999999999999987699
Q ss_pred HHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHCCCCCCCCHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHCCE
Q ss_conf 99999997400035325872036999999671899988978874413236766898369999999992099988864143
Q 001698 872 QQSSHFLRGFQQLIQKDWIDMFNEHELQLLISGSLDSLDFDDLRQNTNYVGGYHSEHYVIEMFWEVLKSFSLENQKKFLK 951 (1026)
Q Consensus 872 ~q~~af~~Gf~~vip~~~l~~F~~~EL~~li~G~~~~id~~~l~~~t~y~ggy~~~~~~i~~FW~vl~~~s~eer~~fL~ 951 (1026)
.|++||++||++|+|.++|++|+|+||+.++||.++ ||+++|++||.|. ||+++|++|+|||+|+++||+|||++||+
T Consensus 228 ~q~~af~~Gf~~vip~~~L~~F~~~ELe~li~G~~~-id~~dl~~~t~y~-gy~~~~~~i~~FW~vv~~~s~eer~~fL~ 305 (380)
T 1zvd_A 228 AQFLALQKGFNEVIPQHLLKTFDEKELELIICGLGK-IDVNDWKVNTRLK-HCTPDSNIVKWFWKAVEFFDEERRARLLQ 305 (380)
T ss_dssp HHHHHHHHHHHHHSCGGGGTTCCHHHHHHHHHCBSS-CCHHHHHHTEEEE-SSCTTSHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCC-CCHHHHHHCCEEC-CCCCCCCHHHHHHHHHHHCCHHHHHHHHH
T ss_conf 999999975988758999857999999986489987-7743565331753-88987613626999997289999999999
Q ss_pred EECCCCCCCCCCCCCCCC-----CEEEEECCCCCCCCCCCCCCEECCCCCEECCCCCCCHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 235777778898456797-----235850589989857999950015658130489999999999999999718986689
Q 001698 952 FVTGCSRGPLLGFKYLEP-----LFCIQRAAGSASEEALDRLPTSATCMNLLKLPPYRSKEQMSTKLLYAINAEAGFDLS 1026 (1026)
Q Consensus 952 FvTG~sr~P~~Gf~~l~p-----~f~i~~~~~~~~~~~~~~LPtA~TCfn~L~LP~Y~s~e~l~eKL~~AI~~~~GF~ls 1026 (1026)
|||||+|+|++||+.|+| +|+|++.+. ++++||+||||||+|+||+|+|+|+|++||++||++++|||+.
T Consensus 306 FvTGs~rlP~~Gf~~L~~~~gp~~f~I~~~~~-----~~~~LP~a~TCfn~L~LP~Y~s~e~l~~kL~~AI~~~~GF~l~ 380 (380)
T 1zvd_A 306 FVTGSSRVPLQGFKALQGAAGPRLFTIHQIDA-----CTNNLPKAHTCFNRIDIPPYESYEKLYEKLLTAIEETCGFAVE 380 (380)
T ss_dssp HHHSCSSBCTTCGGGCEETTEECCEEEEECCC-----CTTSCCEEEGGGTEEEECCCSSHHHHHHHHHHHHCC-------
T ss_pred HHHCCCCCCCCCHHHCCCCCCCCCEEEEECCC-----CCCCCCEEECCCCEEECCCCCCHHHHHHHHHHHHHHCCCCCCC
T ss_conf 98389988986410025667887659995589-----9998977862758878989899999999999999807886869
No 3
>2oni_A E3 ubiquitin-protein ligase NEDD4-like protein; alpha and beta protein (A + B), E3 ligase, HECT domain, UBL- conjugation pathway; HET: MSE; 2.20A {Homo sapiens} PDB: 3jvz_C 3jw0_C 2xbf_A 2xbb_A
Probab=1.00 E-value=1 Score=740.40 Aligned_cols=374 Identities=33% Similarity=0.591 Sum_probs=345.3
Q ss_pred HHHHCCCCCCCHHCHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHCCC-CCCCCCCEEEEEEECCCCC
Q ss_conf 763219810240104999999999998602999875210289719855999999992499-1013773799998336752
Q 001698 626 EILKQAPFLVPFTSRAKIFQSQLASVRQRHGSHGVFTRSRFRIRRDHILEDAYSQMSTMS-EEDLRGAIRVTFVNELGVE 704 (1026)
Q Consensus 626 ~il~~~Pf~~pf~~rv~~f~~~~~~~r~~~~~~~~~~~~~i~VrR~~iled~~~~l~~~~-~~~lk~~l~V~F~~e~G~~ 704 (1026)
..+...||.++|+.|+.+|+..+.+. .....+.+++|||++|++|+++++...+ ++.+|++++|+|+|
T Consensus 11 ~~~~~~p~~~~f~~k~~~f~~~l~~~------~~~~~~~~l~V~R~~i~eds~~~l~~~~~~~~lk~~l~V~F~g----- 79 (392)
T 2oni_A 11 RENLYFQGSREFKQKYDYFRKKLKKP------ADIPNRFEMKLHRNNIFEESYRRIMSVKRPDVLKARLWIEFES----- 79 (392)
T ss_dssp ---CCSTTHHHHHHHHHHHHHHCCCC------SSSCSEEEEEECGGGHHHHHHHHHHHCSCGGGGGSEEEEEEC------
T ss_pred HCCCCCCCCCCHHHHHHHHHHHHHCC------CCCCCCEEEEECCCCHHHHHHHHHHCCCCHHHHCCCEEEEECC-----
T ss_conf 10357986211899999999997125------4789977999817866999999997659277627417999878-----
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHCCCCCCCEECC--CCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHH
Q ss_conf 124468876099999999984034479812248--973010999986145677799999899999988298025667298
Q 001698 705 EAGIDGGGIFKDFMENITRAAFDVQYGLFKETS--DHLLYPNPGSGMIHEQHLQFFHFLGILLAKAMFEGILVDIPFATF 782 (1026)
Q Consensus 705 E~GiD~GG~~rEff~~i~~e~~~p~~glF~~~~--~~~l~pnp~s~~~~~~~l~~f~fiG~llg~ai~~~~~l~l~f~~~ 782 (1026)
|+|+|+|||+||||+++++|+|+|++|||..+. +..++|||.+....++++++|+|+|+++|+|||+|.++|++|+++
T Consensus 80 E~G~D~GG~~rEff~ll~~el~~p~~gLF~~~~~~~~~~~~np~s~~~~~~~l~~f~flG~lig~Al~~~~~ld~~f~~~ 159 (392)
T 2oni_A 80 EKGLDYGGVAREWFFLLSKEMFNPYYGLFEYSATDNYTLQINPNSGLCNEDHLSYFTFIGRVAGLAVFHGKLLDGFFIRP 159 (392)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHTCGGGSSEEESSTTCCCEEECTTHHHHCTTHHHHHHHHHHHHHHHHHHTCCCSSCBCHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHCCCCCCCCEECCCCCCEECCCCCCCCCCHHHHHHHHHCCHHHHHHHCCCCCCCCCCHHH
T ss_conf 76626884389999999999739666874003898822302886354667788888733554304423795037642599
Q ss_pred HHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 99852125888898889997754446775201465331100389981667861024314999643137345999999976
Q 001698 783 FLSKLKQKYNYLNDLPSLDPELYRHLIFLKHYEADISELELYFVILNNEYGEQTEEELLPGGKNIRVTNENVITFIHLVS 862 (1026)
Q Consensus 783 f~k~Ll~~~~~l~DL~~lDp~l~~sL~~l~~~~~dve~l~L~F~~~~~~~g~~~~~eL~p~G~~i~VT~~N~~eYI~~~~ 862 (1026)
|||+|+|.+++++||+++||++|++|++++++ |+++++|+|+++.+.+|...++||+|||++|+||++||.+||++++
T Consensus 160 f~K~llg~~~~l~Dl~~~Dp~l~~sL~~l~~~--d~~~l~L~F~v~~~~~G~~~~veL~p~G~~i~VT~~N~~eYv~l~~ 237 (392)
T 2oni_A 160 FYKMMLGKQITLNDMESVDSEYYNSLKWILEN--DPTELDLMFCIDEENFGQTYQVDLKPNGSEIMVTNENKREYIDLVI 237 (392)
T ss_dssp HHHHHTTCCCCTHHHHTTCHHHHHHHHHHHHS--CCGGGCCBSEEEEEETTEEEEEESSTTGGGCBCCTTTHHHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHCHHHHHHHHHHHCC--CHHHCEEEEEEEEECCCCEEEEECCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 99999679887889877489999998888649--9657304689941038944689637998567344442999999999
Q ss_pred HHHHCHHHHHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHCCCCCCCCHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 66860559999999997400035325872036999999671899988978874413236766898369999999992099
Q 001698 863 NHRLNFQIRQQSSHFLRGFQQLIQKDWIDMFNEHELQLLISGSLDSLDFDDLRQNTNYVGGYHSEHYVIEMFWEVLKSFS 942 (1026)
Q Consensus 863 ~~~l~~~i~~q~~af~~Gf~~vip~~~l~~F~~~EL~~li~G~~~~id~~~l~~~t~y~ggy~~~~~~i~~FW~vl~~~s 942 (1026)
+|+++++++.|++||++||++|+|.+++++|+|+||+.++||.++ ||+++|++||.|.|||+++|++|+|||+|+++|+
T Consensus 238 ~~~l~~~i~~q~~af~~Gf~~vip~~~L~~F~~~ELe~licG~~~-id~~dl~~~t~y~~gy~~~~~~i~~FW~vv~~~s 316 (392)
T 2oni_A 238 QWRFVNRVQKQMNAFLEGFTELLPIDLIKIFDENELELLMCGLGD-VDVNDWRQHSIYKNGYCPNHPVIQWFWKAVLLMD 316 (392)
T ss_dssp HHHHTTTSHHHHHHHHHHHHHHSCHHHHTTSCHHHHHHHHHCCCC-CCHHHHHHTCEEETTCCTTCHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCHHHHHHHHCCCCC-CCHHHHHCCEEECCCCCCCCCHHEEHHHHHHHCC
T ss_conf 998866677999999999998566876516999999886068988-7899984015877887998732200999998499
Q ss_pred HHHHHHCCEEECCCCCCCCCCCCCCC-----CCEEEEECCCCCCCCCCCCCCEECCCCCEECCCCCCCHHHHHHHHHHHH
Q ss_conf 98886414323577777889845679-----7235850589989857999950015658130489999999999999999
Q 001698 943 LENQKKFLKFVTGCSRGPLLGFKYLE-----PLFCIQRAAGSASEEALDRLPTSATCMNLLKLPPYRSKEQMSTKLLYAI 1017 (1026)
Q Consensus 943 ~eer~~fL~FvTG~sr~P~~Gf~~l~-----p~f~i~~~~~~~~~~~~~~LPtA~TCfn~L~LP~Y~s~e~l~eKL~~AI 1017 (1026)
+|||++||+|||||+|+|++||+.|. ++|+|++.+. +++||+||||||+|+||+|+|+|+|++||++||
T Consensus 317 ~eer~~fL~FvTGs~rlP~~Gf~~L~~~~gp~~f~I~~~~~------~~~LP~a~TCfn~L~LP~Yss~e~L~~kL~~AI 390 (392)
T 2oni_A 317 AEKRIRLLQFVTGTSRVPMNGFAELYGSNGPQLFTIEQWGS------PEKLPRAHTCFNRLDLPPYETFEDLREKLLMAV 390 (392)
T ss_dssp HHHHHHHHHHHHSCSCCCTTCGGGCEETTEECCCEEEECSC------TTSCCEEEGGGTEEEECCCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCCEEEEECCC------CCCCCEEECCCCEEECCCCCCHHHHHHHHHHHH
T ss_conf 99999999987189988985554404567887559975898------886968872567868989899999999999997
Q ss_pred HC
Q ss_conf 71
Q 001698 1018 NA 1019 (1026)
Q Consensus 1018 ~~ 1019 (1026)
++
T Consensus 391 ~n 392 (392)
T 2oni_A 391 EN 392 (392)
T ss_dssp C-
T ss_pred HC
T ss_conf 39
No 4
>3olm_A E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=734.65 Aligned_cols=370 Identities=32% Similarity=0.595 Sum_probs=342.6
Q ss_pred CCCCHHCHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCCCCC
Q ss_conf 10240104999999999998602999875210289719855999999992499101377379999833675212446887
Q 001698 633 FLVPFTSRAKIFQSQLASVRQRHGSHGVFTRSRFRIRRDHILEDAYSQMSTMSEEDLRGAIRVTFVNELGVEEAGIDGGG 712 (1026)
Q Consensus 633 f~~pf~~rv~~f~~~~~~~r~~~~~~~~~~~~~i~VrR~~iled~~~~l~~~~~~~lk~~l~V~F~~e~G~~E~GiD~GG 712 (1026)
+.-+|..|..+|+.+.. . .....+.+++|||++|++|+++++...++.++|++|+|+|+| |+|+|+||
T Consensus 51 y~~~~~~k~~~f~~~~~---~----~~~~~~~~l~VrR~~i~eds~~~l~~~~~~~lk~~l~V~F~g-----E~G~D~GG 118 (429)
T 3olm_A 51 YKRDFRRKVIYFRSQPA---L----RILPGQCHIKVRRKNIFEDAYQEIMRQTPEDLKKRLMIKFDG-----EEGLDYGG 118 (429)
T ss_dssp HHHHHHHHHHHHHSSGG---G----SCCSSCEEEEEETTSHHHHHHHHHHHSCHHHHTSCEEEEEET-----TC------
T ss_pred CCCCCHHHHHHHHHHHH---H----CCCCCCEEEEEECCHHHHHHHHHHHHCCHHHCCCCEEEEECC-----CCCCCCCH
T ss_conf 04441477999998775---1----679985589995421189999999846857518636999799-----87437874
Q ss_pred CCHHHHHHHHHHHHCCCCCCCEECCC--CCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCC
Q ss_conf 60999999999840344798122489--7301099998614567779999989999998829802566729899852125
Q 001698 713 IFKDFMENITRAAFDVQYGLFKETSD--HLLYPNPGSGMIHEQHLQFFHFLGILLAKAMFEGILVDIPFATFFLSKLKQK 790 (1026)
Q Consensus 713 ~~rEff~~i~~e~~~p~~glF~~~~~--~~l~pnp~s~~~~~~~l~~f~fiG~llg~ai~~~~~l~l~f~~~f~k~Ll~~ 790 (1026)
|+||||+++++++|+|++|||..+.+ ..++|||.+. ..++++++|+|+|+++|+|||++.++|++|+++|||+|+|.
T Consensus 119 ~~rEff~ll~~elf~p~~gLF~~~~~~~~~~~~np~s~-~~~~~l~~f~flG~lig~Al~~~~~ld~~f~~~f~k~Llg~ 197 (429)
T 3olm_A 119 VSREFFFLLSHEMFNPFYCLFEYSAYDNYTIQINPNSG-INPEHLNYFKFIGRVVGLGVFHRRFLDAFFVGALYKMMLRK 197 (429)
T ss_dssp --CHHHHHHHHHHTCGGGSSEEESSSSSCCEEECGGGG-GSTTHHHHHHHHHHHHHHHHHTTCCCCCCBCHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHCCCCCCCCEEECCCCEEEEECCCCC-CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCC
T ss_conf 49999999999974966799435079981575688655-88778999999999999999669866877689999761399
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHCCCCCCCC-CCEEEEEEECCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCHH
Q ss_conf 888898889997754446775201465331-1003899816678610243149996431373459999999766686055
Q 001698 791 YNYLNDLPSLDPELYRHLIFLKHYEADISE-LELYFVILNNEYGEQTEEELLPGGKNIRVTNENVITFIHLVSNHRLNFQ 869 (1026)
Q Consensus 791 ~~~l~DL~~lDp~l~~sL~~l~~~~~dve~-l~L~F~~~~~~~g~~~~~eL~p~G~~i~VT~~N~~eYI~~~~~~~l~~~ 869 (1026)
+++++||+++||++|++|+++++ +|+++ ++++|++..+.+|...++||+|||++|+||.+||.+||+++++|+++++
T Consensus 198 ~~~l~Dl~~~Dp~l~~sL~~ll~--~d~~~~l~l~F~~~~~~~g~~~~veL~p~G~~i~VT~~Nk~eYV~l~~~~~l~~~ 275 (429)
T 3olm_A 198 KVVLQDMEGVDAEVYNSLNWMLE--NSIDGVLDLTFSADDERFGEVVTVDLKPDGRNIEVTDGNKKEYVELYTQWRIVDR 275 (429)
T ss_dssp CCCHHHHHHHCHHHHHHHHHHTT--SCCTTTCCCBSEEEEEETTEEEEEESSTTGGGSBCCTTTHHHHHHHHHHHHHTTT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHH--CCHHHHHCCCEEEEECCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 99799999876999999999984--8987762374388740479634685467876666570468999999999999876
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHCCCCCCCCHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHC
Q ss_conf 99999999974000353258720369999996718999889788744132367668983699999999920999888641
Q 001698 870 IRQQSSHFLRGFQQLIQKDWIDMFNEHELQLLISGSLDSLDFDDLRQNTNYVGGYHSEHYVIEMFWEVLKSFSLENQKKF 949 (1026)
Q Consensus 870 i~~q~~af~~Gf~~vip~~~l~~F~~~EL~~li~G~~~~id~~~l~~~t~y~ggy~~~~~~i~~FW~vl~~~s~eer~~f 949 (1026)
++.|++||++||++|||.+++++|+|+||+.++||.++ ||+++|++||.|. ||+++|++|+|||+|+++|++|||++|
T Consensus 276 v~~q~~aF~~Gf~~vip~~~L~~F~~~ELe~Li~G~~~-id~~dl~~~t~y~-Gy~~~~~~I~~FW~vv~~~s~eer~~f 353 (429)
T 3olm_A 276 VQEQFKAFMDGFNELIPEDLVTVFDERELELLIGGIAE-IDIEDWKKHTDYR-GYQESDEVIQWFWKCVSEWDNEQRARL 353 (429)
T ss_dssp THHHHHHHHHHHHTTSCHHHHTTSCHHHHHHHHTCBCC-CCHHHHHHTEEEE-SCCTTSHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHCCCCC-CCHHHHHHHCCCC-CCCCCCHHHHHHHHHHHHCCHHHHHHH
T ss_conf 99999999997563279999845999999999569988-8999999746236-999886299999999986899999999
Q ss_pred CEEECCCCCCCCCCCCCCCC-----CEEEEECCCCCCCCCCCCCCEECCCCCEECCCCCCCHHHHHHHHHHHHHCCCCCC
Q ss_conf 43235777778898456797-----2358505899898579999500156581304899999999999999997189866
Q 001698 950 LKFVTGCSRGPLLGFKYLEP-----LFCIQRAAGSASEEALDRLPTSATCMNLLKLPPYRSKEQMSTKLLYAINAEAGFD 1024 (1026)
Q Consensus 950 L~FvTG~sr~P~~Gf~~l~p-----~f~i~~~~~~~~~~~~~~LPtA~TCfn~L~LP~Y~s~e~l~eKL~~AI~~~~GF~ 1024 (1026)
|+|||||+|+|++||+.|+| +|+|++.+. .++||+||||||+|+||.|+|+|+|++||++||++++|||
T Consensus 354 L~FvTGs~rlP~~Gf~~L~~~~g~~~f~I~~~~~------~~~LP~A~TCfN~L~LP~Yss~e~L~ekL~~AI~~~~GFg 427 (429)
T 3olm_A 354 LQFTTGTSRIPVNGFKDLQGSDGPRRFTIEKAGE------VQQLPKSHTCFNRVDLPQYVDYDSMKQKLTLAVEETIGFG 427 (429)
T ss_dssp HHHHHSCSCBCTTCGGGCEETTEECCEEEECCSC------TTSCCEEEGGGTEEECCCCSSHHHHHHHHHHHHHHTC---
T ss_pred HHHHCCCCCCCCCCCCCCCCCCCCCEEEEEECCC------CCCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHCCCCCC
T ss_conf 9585189988975300046767772189962898------7789722014377689798999999999999997279878
Q ss_pred C
Q ss_conf 8
Q 001698 1025 L 1025 (1026)
Q Consensus 1025 l 1025 (1026)
+
T Consensus 428 ~ 428 (429)
T 3olm_A 428 Q 428 (429)
T ss_dssp -
T ss_pred C
T ss_conf 7
No 5
>1nd7_A WW domain-containing protein 1; HECT, ubiquitin, ligase, WWP1; 2.10A {Homo sapiens} SCOP: d.148.1.1 PDB: 3tug_A
Probab=1.00 E-value=1 Score=728.92 Aligned_cols=365 Identities=33% Similarity=0.588 Sum_probs=338.7
Q ss_pred CHHCHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCH
Q ss_conf 40104999999999998602999875210289719855999999992499101377379999833675212446887609
Q 001698 636 PFTSRAKIFQSQLASVRQRHGSHGVFTRSRFRIRRDHILEDAYSQMSTMSEEDLRGAIRVTFVNELGVEEAGIDGGGIFK 715 (1026)
Q Consensus 636 pf~~rv~~f~~~~~~~r~~~~~~~~~~~~~i~VrR~~iled~~~~l~~~~~~~lk~~l~V~F~~e~G~~E~GiD~GG~~r 715 (1026)
+|+.|+.+|+.++.... ...+.+++|||++|++|+++++...++.++|++++|+|+| |+|+|+|||+|
T Consensus 3 ~f~~k~~~f~~~~~~~~-------~~~~~~l~V~R~~i~~ds~~~l~~~~~~~l~~~l~V~F~g-----E~G~D~GG~~r 70 (374)
T 1nd7_A 3 GFRWKLAHFRYLCQSNA-------LPSHVKINVSRQTLFEDSFQQIMALKPYDLRRRLYVIFRG-----EEGLDYGGLAR 70 (374)
T ss_dssp THHHHHHHHHHHHHHTC-------CSSEEEEEECTTTHHHHHHHHHHTSCGGGGGSEEEEEETT-----TCCCCCTHHHH
T ss_pred CHHHHHHHHHHHHHHCC-------CCCCEEEEECCCCHHHHHHHHHHHCCHHHCCCEEEEEECC-----CCCCCCCCCHH
T ss_conf 75899999999986247-------9997699987887799999999836987615548999888-----77757884289
Q ss_pred HHHHHHHHHHHCCCCCCCEECCC--CCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCC
Q ss_conf 99999999840344798122489--7301099998614567779999989999998829802566729899852125888
Q 001698 716 DFMENITRAAFDVQYGLFKETSD--HLLYPNPGSGMIHEQHLQFFHFLGILLAKAMFEGILVDIPFATFFLSKLKQKYNY 793 (1026)
Q Consensus 716 Eff~~i~~e~~~p~~glF~~~~~--~~l~pnp~s~~~~~~~l~~f~fiG~llg~ai~~~~~l~l~f~~~f~k~Ll~~~~~ 793 (1026)
|||+++++|+|+|++|||..+++ ..++|||.+. ..++++++|+|+|+++|+|||+|.++|++|+++|||+|+|.+++
T Consensus 71 Eff~ll~~el~~p~~~lF~~~~~~~~~~~~~p~s~-~~~~~l~~f~flG~lig~al~~~~~ld~~f~~~f~k~llg~~~~ 149 (374)
T 1nd7_A 71 EWFFLLSHEVLNPMYCLFEYAGKNNYCLQINPAST-INPDHLSYFCFIGRFIAMALFHGKFIDTGFSLPFYKRMLSKKLT 149 (374)
T ss_dssp HHHHHHHHHHTCGGGSSEEESSSSSCCEEECGGGG-GSTTHHHHHHHHHHHHHHHHHTTCCCCCCCCHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCEECCCCCCC-CCHHHHHHHHHHHHHHHHHHHCCCEECCCCCHHHHHHHHCCCCC
T ss_conf 99999999973976465431588883220487445-78779999999899987998659743785879999999389887
Q ss_pred CCCCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCHHHHHH
Q ss_conf 89888999775444677520146533110038998166786102431499964313734599999997666860559999
Q 001698 794 LNDLPSLDPELYRHLIFLKHYEADISELELYFVILNNEYGEQTEEELLPGGKNIRVTNENVITFIHLVSNHRLNFQIRQQ 873 (1026)
Q Consensus 794 l~DL~~lDp~l~~sL~~l~~~~~dve~l~L~F~~~~~~~g~~~~~eL~p~G~~i~VT~~N~~eYI~~~~~~~l~~~i~~q 873 (1026)
++||+++||++|++|+++++++.+..+++++|+++.+.+|...++||+|||++|+||.+||.+||+++++|+++++++.|
T Consensus 150 l~Dl~~~Dp~l~~sL~~l~~~~~~~~~l~l~F~~~~~~~G~~~~veL~p~G~~i~VT~~N~~eYv~l~~~~~l~~~i~~q 229 (374)
T 1nd7_A 150 IKDLESIDTEFYNSLIWIRDNNIEECGLEMYFSVDMEILGKVTSHDLKLGGSNILVTEENKDEYIGLMTEWRFSRGVQEQ 229 (374)
T ss_dssp HHHHHTTCHHHHHHHHHHHSSCSCSSCCCCBSEECCCSSTTCCCEESSTTGGGCBCCTTTHHHHHHHHHHHHHHTTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHCCEEEEEEECCCCCEEEEECCCCCCCCEECCCCHHHHHHHHHHHHHHCCHHHH
T ss_conf 88999961999986542135985253110158875114785004744789967452311099999999999970209999
Q ss_pred HHHHHHHHCCCCCHHHHHHCCHHHHHHHHCCCCCCCCHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHCCEEE
Q ss_conf 99999740003532587203699999967189998897887441323676689836999999999209998886414323
Q 001698 874 SSHFLRGFQQLIQKDWIDMFNEHELQLLISGSLDSLDFDDLRQNTNYVGGYHSEHYVIEMFWEVLKSFSLENQKKFLKFV 953 (1026)
Q Consensus 874 ~~af~~Gf~~vip~~~l~~F~~~EL~~li~G~~~~id~~~l~~~t~y~ggy~~~~~~i~~FW~vl~~~s~eer~~fL~Fv 953 (1026)
++||++||++|+|.++|++|+|+||+.++||.++ ||+++|++||.|.| |+++|++|+|||+|+++||+|||++||+||
T Consensus 230 ~~af~~Gf~~vip~~~L~~F~~~ELe~li~G~~~-id~~dl~~~t~y~g-y~~~~~~i~~FW~vv~~~~~eer~~fL~Fv 307 (374)
T 1nd7_A 230 TKAFLDGFNEVVPLQWLQYFDEKELEVMLCGMQE-VDLADWQRNTVYRH-YTRNSKQIIWFWQFVKETDNEVRMRLLQFV 307 (374)
T ss_dssp HHHHHHHHHHHSCGGGGTTCCHHHHHHHHHCCCC-CCHHHHHHTEEEES-CCTTSHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCHHHHHCCCHHHHHHHHCCCCC-CCHHHHHHHEEECC-CCCCCCCEEEHHHHHHHCCHHHHHHHHHHH
T ss_conf 9999986465089899846999999998569987-88898751069748-998984025499999865999999999998
Q ss_pred CCCCCCCCCCCCCCC-----CCEEEEECCCCCCCCCCCCCCEECCCCCEECCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 577777889845679-----72358505899898579999500156581304899999999999999997189
Q 001698 954 TGCSRGPLLGFKYLE-----PLFCIQRAAGSASEEALDRLPTSATCMNLLKLPPYRSKEQMSTKLLYAINAEA 1021 (1026)
Q Consensus 954 TG~sr~P~~Gf~~l~-----p~f~i~~~~~~~~~~~~~~LPtA~TCfn~L~LP~Y~s~e~l~eKL~~AI~~~~ 1021 (1026)
|||+|+|++||+.|. ++|+|++.+. +++||+||||||+|+||+|+|+|+|++||++||++++
T Consensus 308 TGs~rlP~~Gf~~L~~~~gp~~f~I~~~~~------~~~LP~a~TCfn~L~LP~Y~s~e~l~~kL~~AI~~~e 374 (374)
T 1nd7_A 308 TGTCRLPLGGFAELMGSNGPQKFCIEKVGK------DTWLPRSHTCFNRLDLPPYKSYEQLKEKLLFAIEETE 374 (374)
T ss_dssp HSCSCCCTTCGGGCEETTEECCEEEECCSC------TTSCCEEEGGGTEEECCCCSSHHHHHHHHHHHHHSCC
T ss_pred HCCCCCCCCCHHHCCCCCCCCCEEEEECCC------CCCCCEEECCCCEEECCCCCCHHHHHHHHHHHHHHCC
T ss_conf 489988984332215667887659975898------9869778716598779898999999999999997149
No 6
>1c4z_A E6AP, ubiquitin-protein ligase E3A; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.148.1.1 PDB: 1d5f_A
Probab=1.00 E-value=1 Score=725.36 Aligned_cols=347 Identities=34% Similarity=0.611 Sum_probs=324.9
Q ss_pred CEEEEECCCCHHHHHHHHHH---CCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEECC-C
Q ss_conf 10289719855999999992---4991013773799998336752124468876099999999984034479812248-9
Q 001698 663 RSRFRIRRDHILEDAYSQMS---TMSEEDLRGAIRVTFVNELGVEEAGIDGGGIFKDFMENITRAAFDVQYGLFKETS-D 738 (1026)
Q Consensus 663 ~~~i~VrR~~iled~~~~l~---~~~~~~lk~~l~V~F~~e~G~~E~GiD~GG~~rEff~~i~~e~~~p~~glF~~~~-~ 738 (1026)
..+++|||++|++|+++++. ..++.++|++++|+|+| |+|+|+|||+||||+++++++|+|++|||..++ +
T Consensus 5 ~~~l~V~R~~i~eds~~~l~~~~~~~~~~lk~~l~V~F~g-----E~G~D~GG~~rEff~ll~~el~~p~~glF~~~~~~ 79 (358)
T 1c4z_A 5 YLRLKVRRDHIIDDALVRLEMIAMENPADLKKQLYVEFEG-----EQGVDEGGVSKEFFQLVVEEIFNPDIGMFTYDEST 79 (358)
T ss_dssp SCCEEECSSSHHHHHHHHHHHHHHSCGGGGGSCCCEEETT-----CCCCCSSHHHHHHHHHHHHHHTSGGGCSEEEETTT
T ss_pred EEEEEECCCCHHHHHHHHHHHHHCCCHHHHCCCEEEEECC-----CCCCCCCCCHHHHHHHHHHHHCCCCCCCEEECCCC
T ss_conf 3899976875799999999987326979865746999778-----76748886399999999999718767955652899
Q ss_pred CCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf 73010999986145677799999899999988298025667298998521258888988899977544467752014653
Q 001698 739 HLLYPNPGSGMIHEQHLQFFHFLGILLAKAMFEGILVDIPFATFFLSKLKQKYNYLNDLPSLDPELYRHLIFLKHYEADI 818 (1026)
Q Consensus 739 ~~l~pnp~s~~~~~~~l~~f~fiG~llg~ai~~~~~l~l~f~~~f~k~Ll~~~~~l~DL~~lDp~l~~sL~~l~~~~~dv 818 (1026)
+.+||||.+.. ..++|+|+|+++|+|||++.+++++||++|||+|+|.+++++||+++||++|++|++++++++|+
T Consensus 80 ~~~~~np~s~~----~~~~f~flG~lig~Al~~~~~ld~~f~~~f~k~llg~~~~l~Dl~~~Dp~l~~sL~~l~~~~~d~ 155 (358)
T 1c4z_A 80 KLFWFNPSSFE----TEGQFTLIGIVLGLAIYNNCILDVHFPMVVYRKLMGKKGTFRDLGDSHPVLYQSLKDLLEYEGNV 155 (358)
T ss_dssp TEEEECTTCCS----CHHHHHHHHHHHHHHHHTTCCCCCCCCHHHHHHHTTCCCCHHHHHHHSHHHHHHHHHHHHCCSCH
T ss_pred CEEEECCCCCC----CHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHCHHHHHHHHHHHHCCCCH
T ss_conf 84742773223----35778869999999997799768768899999995899988999986999999999998557766
Q ss_pred C-CCCEEEEEEE-CCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCHHHHH-HCCH
Q ss_conf 3-1100389981-66786102431499964313734599999997666860559999999997400035325872-0369
Q 001698 819 S-ELELYFVILN-NEYGEQTEEELLPGGKNIRVTNENVITFIHLVSNHRLNFQIRQQSSHFLRGFQQLIQKDWID-MFNE 895 (1026)
Q Consensus 819 e-~l~L~F~~~~-~~~g~~~~~eL~p~G~~i~VT~~N~~eYI~~~~~~~l~~~i~~q~~af~~Gf~~vip~~~l~-~F~~ 895 (1026)
+ +++++|++.. +.+|...++||+|||++|+||.+||.+||+++++|+++++++.|++||++||++|+|..+|. +|+|
T Consensus 156 ~~~l~ltF~~~~~~~~G~~~~~eL~p~G~~i~VT~~N~~eYv~l~~~~~l~~~i~~q~~af~~Gf~~vip~~~L~~lF~~ 235 (358)
T 1c4z_A 156 EDDMMITFQISQTDLFGNPMMYDLKENGDKIPITNENRKEFVNLYSDYILNKSVEKQFKAFRRGFHMVTNESPLKYLFRP 235 (358)
T ss_dssp HHHTCCBSEEEECCTTTCCEEEESSTTTTTSBCCTTTHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHHSSSCSCSCSST
T ss_pred HHHCCCEEEEECCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHCCCCH
T ss_conf 66503507874145689753464477986665442129999999999986210999999999888873695253348999
Q ss_pred HHHHHHHCCCCCCCCHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHCCEEECCCCCCCCCCCCCCCCCEEEEE
Q ss_conf 99999671899988978874413236766898369999999992099988864143235777778898456797235850
Q 001698 896 HELQLLISGSLDSLDFDDLRQNTNYVGGYHSEHYVIEMFWEVLKSFSLENQKKFLKFVTGCSRGPLLGFKYLEPLFCIQR 975 (1026)
Q Consensus 896 ~EL~~li~G~~~~id~~~l~~~t~y~ggy~~~~~~i~~FW~vl~~~s~eer~~fL~FvTG~sr~P~~Gf~~l~p~f~i~~ 975 (1026)
+||+.++||.++ ||+++|++||+|.|||+++|++|+|||+|+++|++|||++||+|||||+|+|++||+.+ +|+|++
T Consensus 236 ~ELe~li~G~~~-id~~~l~~~t~y~~gy~~~~~~i~~FW~vv~~~~~eer~~fL~FvTGs~rlP~~Gf~~l--~~~I~~ 312 (358)
T 1c4z_A 236 EEIELLICGSRN-LDFQALEETTEYDGGYTRDSVLIREFWEIVHSFTDEQKRLFLQFTTGTDRAPVGGLGKL--KMIIAK 312 (358)
T ss_dssp HHHHHHHHCBCC-CCCTTTSTTCEEESSCCSSCHHHHHHHHHHHTSCHHHHHHHHHHHSSSSSBCTTCGGGG--CCEEEE
T ss_pred HHHHHHHHCCCC-CCHHHHHHHCEECCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCC--EEEEEC
T ss_conf 999998613567-88999998713178989776045369999973999999999989708997899885545--246204
Q ss_pred CCCCCCCCCCCCCCEECCCCCEECCCCCCCHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 589989857999950015658130489999999999999999718986689
Q 001698 976 AAGSASEEALDRLPTSATCMNLLKLPPYRSKEQMSTKLLYAINAEAGFDLS 1026 (1026)
Q Consensus 976 ~~~~~~~~~~~~LPtA~TCfn~L~LP~Y~s~e~l~eKL~~AI~~~~GF~ls 1026 (1026)
.+.+ .++||+||||||+|+||+|+|+|+|++||++||++++||||.
T Consensus 313 ~~~~-----~~~LP~a~TCfn~L~LP~Y~s~e~l~~kL~~AI~~~~GFgl~ 358 (358)
T 1c4z_A 313 NGPD-----TERLPTSHTCFNVLLLPEYSSKEKLKERLLKAITYAKGFGML 358 (358)
T ss_dssp EEES-----CSCCCEEEGGGTEEEEEECSCHHHHHHHHHHHHHHC------
T ss_pred CCCC-----CCCCEEEECCCCEEECCCCCCHHHHHHHHHHHHHHCCCCCCC
T ss_conf 7898-----888807873578868989899999999999999818997849
No 7
>3pt3_A E3 ubiquitin-protein ligase UBR5; EDD, HHYD, mixed alpha-beta fold, ubiquitin ligase; 1.97A {Homo sapiens}
Probab=1.00 E-value=1 Score=263.09 Aligned_cols=109 Identities=26% Similarity=0.429 Sum_probs=102.0
Q ss_pred CCCHHHHHHCCCCCCCCCCCC----HHHHHHHHHHHCCCHHHHHHCCEEECCCCCCCC--CCCCCCCCCEEEEECCCCCC
Q ss_conf 889788744132367668983----699999999920999888641432357777788--98456797235850589989
Q 001698 908 SLDFDDLRQNTNYVGGYHSEH----YVIEMFWEVLKSFSLENQKKFLKFVTGCSRGPL--LGFKYLEPLFCIQRAAGSAS 981 (1026)
Q Consensus 908 ~id~~~l~~~t~y~ggy~~~~----~~i~~FW~vl~~~s~eer~~fL~FvTG~sr~P~--~Gf~~l~p~f~i~~~~~~~~ 981 (1026)
-||+++|++||+|.|+|++++ ++|+|||+|+++|++|||++||+|||||+|+|+ +||+.+ |+|+|+. .
T Consensus 3 ~~Dv~dLr~~T~Y~~~~~~~~~~~~~~i~wFW~vv~~~~~eer~~fL~FvTGs~rlP~~~~Gf~~l-~~~~i~~--~--- 76 (118)
T 3pt3_A 3 LGSVQMLISFTSFNDESGENAEKLLQFKRWFWSIVEKMSMTERQDLVYFWTSSPSLPASEEGFQPM-PSITIRP--P--- 76 (118)
T ss_dssp ---------CCEEEECSCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHSCC-------------CEEEEES--C---
T ss_pred CCCHHHHHHHCEECCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCC-CCEEEEC--C---
T ss_conf 038999983327718867775320569999999999799999999882743899888765675569-8479978--9---
Q ss_pred CCCCCCCCEECCCCCEECCCCCCCHHHHHHHHHHHHHCCCCCCC
Q ss_conf 85799995001565813048999999999999999971898668
Q 001698 982 EEALDRLPTSATCMNLLKLPPYRSKEQMSTKLLYAINAEAGFDL 1025 (1026)
Q Consensus 982 ~~~~~~LPtA~TCfn~L~LP~Y~s~e~l~eKL~~AI~~~~GF~l 1025 (1026)
++++||+||||||+|+||.|+|+|+|++||++||++ +|||+
T Consensus 77 --~~~~LP~A~TCfn~L~LP~Y~s~e~L~~kL~~AI~~-~gfGf 117 (118)
T 3pt3_A 77 --DDQHLPTANTCISRLYVPLYSSKQILKQKLLLAIKT-KNFGF 117 (118)
T ss_dssp --CTTSCCEEETTTTEEEEECCSSHHHHHHHHHHHHC-------
T ss_pred --CCCCCCCCEEHHCEEECCCCCCHHHHHHHHHHHHHH-CCCCC
T ss_conf --988793200021263797989999999999999984-79478
No 8
>1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=38.11 Aligned_cols=23 Identities=17% Similarity=0.218 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99745579899777889999999
Q 001698 43 RRQNHAAIKIQKCFRGKKAMEIE 65 (1026)
Q Consensus 43 Rrr~~aAi~IQ~~~Rg~~~r~~~ 65 (1026)
.+++.||++||++||||++|+..
T Consensus 25 ~~~~~aai~IQ~~~Rg~~~Rk~y 47 (48)
T 1n2d_C 25 EMKVNCATLLQAAYRGHSIRANV 47 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 98888899999999869999866
No 9
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=1.00 E-value=1 Score=35.88 Aligned_cols=72 Identities=14% Similarity=0.162 Sum_probs=42.5
Q ss_pred CCCCCHHHHHHHHHHHHCCCCCCCEECCCCCEEECCCCC--CC-HHHHHHHHHHHHHHHHHHHH-CCCCCCCCCCHHHHH
Q ss_conf 887609999999998403447981224897301099998--61-45677799999899999988-298025667298998
Q 001698 710 GGGIFKDFMENITRAAFDVQYGLFKETSDHLLYPNPGSG--MI-HEQHLQFFHFLGILLAKAMF-EGILVDIPFATFFLS 785 (1026)
Q Consensus 710 ~GG~~rEff~~i~~e~~~p~~glF~~~~~~~l~pnp~s~--~~-~~~~l~~f~fiG~llg~ai~-~~~~l~l~f~~~f~k 785 (1026)
.|+-+|+-+..+...+-.. ..-|.. ++-||.... .. ...-+.-.+..|.+=+.-|. .|.+.-.+|..|+-+
T Consensus 636 v~~~fk~sL~~Lm~~L~~t-~phfVR----CIkPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~R~~~~eF~~R 710 (1080)
T 2dfs_A 636 VGHQFRNSLHLLMETLNAT-TPHYVR----CIKPNDFKFPFTFDEKRAVQQLRACGVLETIRISAAGFPSRWTYQEFFSR 710 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHSS-EEEEEE----EECCCSSCCTTCCCHHHHHHHHHTTTHHHHHHHHTTSCCEEEEHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHC-CCEEEE----EECCCCCCCCHHCCHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf 8999999999999999706-986688----75688878810067786287985266177775875387851148899999
Q ss_pred H
Q ss_conf 5
Q 001698 786 K 786 (1026)
Q Consensus 786 ~ 786 (1026)
+
T Consensus 711 Y 711 (1080)
T 2dfs_A 711 Y 711 (1080)
T ss_dssp H
T ss_pred H
T ss_conf 9
No 10
>3gn4_A Myosin-VI; unconventional myosin, motility, lever ARM, 3-helix bundle, actin-binding, ATP-binding, calmodulin-binding, coiled coil; 2.70A {Sus scrofa}
Probab=1.00 E-value=1 Score=35.26 Aligned_cols=34 Identities=18% Similarity=0.161 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999745579899777889999999999999999
Q 001698 41 YLRRQNHAAIKIQKCFRGKKAMEIEHSKVREQFF 74 (1026)
Q Consensus 41 ~~Rrr~~aAi~IQ~~~Rg~~~r~~~~~~~r~efd 74 (1026)
--.=|..++|+||+.+|||++|++.+..++.--.
T Consensus 40 KI~yR~~~~i~iQktvR~~L~rkkhkPRi~g~~k 73 (148)
T 3gn4_A 40 KIKYRAEACIKMQKTIRMWLCKRRHKPRIDGLVK 73 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999899999999999999865349999999
Done!