Query 001700
Match_columns 1025
No_of_seqs 583 out of 6680
Neff 9.0
Searched_HMMs 29240
Date Tue Mar 26 15:49:18 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001700.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_999-1003//hhsearch_pdb/001700hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 1.0 1 1 541.6 40.0 482 13-524 6-509 (768)
2 4ecn_A Leucine-rich repeat pro 1.0 1 1 449.8 35.4 465 17-524 267-846 (876)
3 4eco_A Uncharacterized protein 1.0 1 1 443.8 33.8 469 17-523 28-605 (636)
4 3rgz_A Protein brassinosteroid 1.0 1 1 435.3 31.6 442 65-528 100-561 (768)
5 3j0a_A TOLL-like receptor 5; m 1.0 1 1 409.7 32.0 469 51-539 10-559 (844)
6 3t6q_A CD180 antigen; protein- 1.0 1 1 400.2 35.2 458 51-525 6-543 (606)
7 4aoj_A High affinity nerve gro 1.0 1 1 397.3 21.7 256 737-1019 46-320 (329)
8 3vq2_A TLR4, TOLL-like recepto 1.0 1 1 395.9 36.1 442 58-518 14-534 (606)
9 4asz_A BDNF/NT-3 growth factor 1.0 1 1 395.3 17.4 256 737-1019 18-290 (299)
10 4gt4_A Tyrosine-protein kinase 1.0 1 1 392.0 20.4 254 737-1017 31-305 (308)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=541.57 Aligned_cols=482 Identities=27% Similarity=0.383 Sum_probs=283.5
Q ss_pred HHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCEEEEEECCCCCCCC---CCCCCCCCC
Q ss_conf 52189456999999986158899997346878889999999998522480799889999389996013---591000399
Q 001700 13 VNALGQSDFEALLQLKKGIAKDPSGQIIDSWDTKSLSSDGCPRNWFGITCTNGYVTSIMLNDMGLVGN---FSFPTIIGL 89 (1025)
Q Consensus 13 ~~~~~~~~~~~ll~~k~~~~~~~~~~~~~~w~~~~~~~d~C~~~w~gv~C~~~~v~~l~l~~~~l~g~---~~~~~~~~L 89 (1025)
+.++.++|++||++||+++ .||. .+ ++|+.+ .|||. |.||+|+.++|+.|+|.+.++.|. ++ +++.+|
T Consensus 6 ~~~~~~~~~~all~~k~~~-~~~~-~l-~~W~~~---~~~C~--w~gv~C~~~~v~~L~L~~~~l~g~~~~l~-~~l~~L 76 (768)
T 3rgz_A 6 PSQSLYREIHQLISFKDVL-PDKN-LL-PDWSSN---KNPCT--FDGVTCRDDKVTSIDLSSKPLNVGFSAVS-SSLLSL 76 (768)
T ss_dssp --CCHHHHHHHHHHHHTTC-SCTT-SS-TTCCTT---SCGGG--STTEEEETTEEEEEECTTSCCCEEHHHHH-HHTTTC
T ss_pred CCCCCHHHHHHHHHHHHHC-CCCC-CC-CCCCCC---CCCCC--CCCEEECCCCEEEEECCCCCCCCCCCCCC-HHHHCC
T ss_conf 5668789999999999667-8962-14-687899---98768--84138789927898778998677557669-657316
Q ss_pred CCCCEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCC--CCCCCCCCCEEECCCCCCCCCCCCCC-CCCCCCCEE
Q ss_conf 899988755885865788889999999996668848523820--13389999979734774556799643-344356476
Q 001700 90 KMLCNVSVSNNQLMGNITDIGSIQSLEFLDLSHNLFHGLIPS--GIVSLKNLMLLNISSNSFEGTFPSGF-GGLGKLKYL 166 (1025)
Q Consensus 90 ~~L~~L~l~~N~~~~~~~~~~~l~~L~~LdLs~N~i~~~~p~--~~~~l~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L 166 (1025)
++|+.++++.|.+...+..++.+++|++|||++|.+++.+|. .++++++|++|+|++|.+.+..|..+ ..+++|++|
T Consensus 77 ~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L 156 (768)
T 3rgz_A 77 TGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVL 156 (768)
T ss_dssp TTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEE
T ss_pred CCCCCCCCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCCEE
T ss_conf 80224678688867870332457889989898985787078967872788999898968826774797785638899989
Q ss_pred ECCCCCCCCCCHHH---HHHCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 44467889983267---642044767828447563224799988754555557865466665744789999889987888
Q 001700 167 DLRANRFGGDIMHL---LSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSIQYLNISENSLVGELFPHDGMPYFDNLEVF 243 (1025)
Q Consensus 167 ~Ls~N~l~~~~~~~---~~~l~~L~~L~Ls~N~l~~~~~~~l~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L 243 (1025)
+|++|++++..+.. +.++++|+.|++++|.+++..+. ..+++|++|++++|.+.+.++. +..+++|+.|
T Consensus 157 ~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-----~~l~~L~~L~Ls~n~l~~~~~~---l~~l~~L~~L 228 (768)
T 3rgz_A 157 DLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV-----SRCVNLEFLDVSSNNFSTGIPF---LGDCSALQHL 228 (768)
T ss_dssp ECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC-----TTCTTCCEEECCSSCCCSCCCB---CTTCCSCCEE
T ss_pred ECCCCCCCCCCCHHHHHHCCCCCCCEEECCCCCCCCCCCC-----CCCCCCCEEECCCCCCCCCCCC---CCCCCCCCEE
T ss_conf 8979835885871556643589889898978803465784-----5478689898928827887711---1269999989
Q ss_pred ECCCCCCCCCCC-CCCCCCCCCCEECCCCCCCCCCCHHHHHHCCCCCCEEECCCCCCCCCC--CCCC-CCCCCEEECCCC
Q ss_conf 655883556678-531113345121145215235894577314456586876566676854--6557-887458984598
Q 001700 244 DASNNHLVGAIP-SFNFVFSLRILRLGSNQLSGSLPVALLQESSMMLSELDLSLNQLEGPV--GSIT-SATLKKVNLSSN 319 (1025)
Q Consensus 244 ~Ls~N~l~~~~~-~~~~l~~L~~L~L~~N~l~g~~p~~~~~~~~~~L~~L~ls~N~l~~~~--~~~~-~~~L~~L~ls~N 319 (1025)
++++|.+++..| .+..+++|+.|++++|.+.+.+|.. ....|+.|++++|.+.+.. .... +++|+.|++++|
T Consensus 229 ~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~----~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n 304 (768)
T 3rgz_A 229 DISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL----PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGN 304 (768)
T ss_dssp ECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC----CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSS
T ss_pred ECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCC----CCCCCCEEECCCCCCCCCCCHHHHHHCCCCCEEECCCC
T ss_conf 79488587816577744888898989888665716724----36878989791785577258888844686889989689
Q ss_pred CCCCCCCCCC---CCCCEEECCCCCCCCCCC-CCCCCCCCCCEEEECCCCCCCCCCHHCCCCC-CCCEEEECCCCCCCCC
Q ss_conf 5569889988---776655123754778632-1245788646677137877898930003788-8899982486367885
Q 001700 320 KLSGSLPARV---GHCTIVDLSNNRLSGDLS-RMQNWGNYVEDIHLSSNFLTGMVPNQTSQFL-RLTSFKVSNNSLEGDL 394 (1025)
Q Consensus 320 ~l~~~~p~~l---~~l~~L~Ls~n~l~~~~~-~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~-~L~~L~Ls~N~l~g~~ 394 (1025)
.+.+.+|..+ .+|+.|++++|.+.+.++ ..+.....|+.|++++|.+++.+|..+..+. +|+.|++++|.+.+.+
T Consensus 305 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~ 384 (768)
T 3rgz_A 305 HFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPI 384 (768)
T ss_dssp EEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEEC
T ss_pred CCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHHHHCCCCEEECCCCCCCCCC
T ss_conf 67784236775587766778978852573797887248888788484784376230989863227719986278747876
Q ss_pred CCCCCC--CCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCC
Q ss_conf 601389--999987624797245558612228999878966799474668933324899855444456348985378485
Q 001700 395 PAVLGT--YPELKVIDLSLNHLNGFLLPSFFTSTKLTDLNLSGNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLAYNSLS 472 (1025)
Q Consensus 395 p~~l~~--l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~ 472 (1025)
|..+.. +++|+.|++++|++++..|..+..+++|+.|++++|++++.+|.. ..... +|+.|++++|.++
T Consensus 385 ~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-------l~~l~--~L~~L~L~~n~l~ 455 (768)
T 3rgz_A 385 LPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSS-------LGSLS--KLRDLKLWLNMLE 455 (768)
T ss_dssp CTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGG-------GGGCT--TCCEEECCSSCCC
T ss_pred CHHHHHCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHH-------HHCCC--CCCEEECCCCCCC
T ss_conf 76665332477618989778465424877756898798989588466854677-------74499--8898989788154
Q ss_pred CCCCHHHHCCCCCCEEECCCCCCCCCCCCCCC--CCCCEEECCCCCCCCCCCCC
Q ss_conf 56873221689999762857847222598857--99957978788264568988
Q 001700 473 GRLLPGISKFHNLVYLNLSNNKFEGSIPDGLP--NGLKEFNVSFNNLSGVVPEN 524 (1025)
Q Consensus 473 ~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~--~~L~~L~ls~N~l~g~~p~~ 524 (1025)
+.+|..+..+++|+.|+|++|++++.+|.++. ..|+.|++++|.+++.+|.+
T Consensus 456 ~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~ 509 (768)
T 3rgz_A 456 GEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKW 509 (768)
T ss_dssp SCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGG
T ss_pred CCCCHHHCCCCCCEEEEECCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHH
T ss_conf 718978828777329990199513758878816998998975399518968768
No 2
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=1.00 E-value=1 Score=449.78 Aligned_cols=465 Identities=20% Similarity=0.226 Sum_probs=335.5
Q ss_pred CHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC--CCCCCCCCCC------------CCEECC-CCCEEEEEECCCCCCCCC
Q ss_conf 9456999999986158899997346878889--9999999985------------224807-998899993899960135
Q 001700 17 GQSDFEALLQLKKGIAKDPSGQIIDSWDTKS--LSSDGCPRNW------------FGITCT-NGYVTSIMLNDMGLVGNF 81 (1025)
Q Consensus 17 ~~~~~~~ll~~k~~~~~~~~~~~~~~w~~~~--~~~d~C~~~w------------~gv~C~-~~~v~~l~l~~~~l~g~~ 81 (1025)
..+|+.||++||+++ .+| +|+.++ ...+||.|.| .||+|+ .++|+.|+|++.++.|.+
T Consensus 267 ~~~d~~ALl~~k~~l-~~~------~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~~~~V~~L~Ls~~~L~G~i 339 (876)
T 4ecn_A 267 YIKDYKALKAIWEAL-DGK------NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRV 339 (876)
T ss_dssp HHHHHHHHHHHHHHT-TGG------GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECTTSCEEEEECTTTCCEEEE
T ss_pred CHHHHHHHHHHHHHC-CCC------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCEEEEECCCCCCCCCC
T ss_conf 317899999999973-799------9886898653367764034666545335768428369997989987247899948
Q ss_pred CCCCCCCCCCCCEEEC-CCCCCCCCCC-C-------------------------------------------------C-
Q ss_conf 9100039989998875-5885865788-8-------------------------------------------------8-
Q 001700 82 SFPTIIGLKMLCNVSV-SNNQLMGNIT-D-------------------------------------------------I- 109 (1025)
Q Consensus 82 ~~~~~~~L~~L~~L~l-~~N~~~~~~~-~-------------------------------------------------~- 109 (1025)
+ +++.+|++|+.|+| ++|.+.|..+ . +
T Consensus 340 p-~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i~ 418 (876)
T 4ecn_A 340 P-DAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIK 418 (876)
T ss_dssp C-GGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCCCC
T ss_pred C-HHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCC
T ss_conf 5-577415556284301256335666422234454411567888777666654203751115678787765073324322
Q ss_pred -CCCCCCCEEECCC--CCCCCCCCCCCCCCCCCCEEECCCCCCCC-----------------CCCCCCC--CCCCCCEEE
Q ss_conf -9999999996668--84852382013389999979734774556-----------------7996433--443564764
Q 001700 110 -GSIQSLEFLDLSH--NLFHGLIPSGIVSLKNLMLLNISSNSFEG-----------------TFPSGFG--GLGKLKYLD 167 (1025)
Q Consensus 110 -~~l~~L~~LdLs~--N~i~~~~p~~~~~l~~L~~L~Ls~N~l~~-----------------~~p~~~~--~l~~L~~L~ 167 (1025)
.....++.+.+.. |.+++ +|..|+++++|+.|+|++|+|++ .+|..++ ++++|++|+
T Consensus 419 ~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~ 497 (876)
T 4ecn_A 419 KDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVE 497 (876)
T ss_dssp CCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEE
T ss_pred CCCCCCHHHCEECCCCCCCCC-HHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCEEE
T ss_conf 235442312040566676152-1188756999878979688678874653223322222244587444025599977898
Q ss_pred CCCCCCCCCCHHHHHHCCCCCEEECCCCC-CCC-CCCCCCCCC----CCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 44678899832676420447678284475-632-247999887----545555578654666657447899998899878
Q 001700 168 LRANRFGGDIMHLLSQLGSVVHVDLSNNQ-FSG-SLDLGLGDS----SFISSIQYLNISENSLVGELFPHDGMPYFDNLE 241 (1025)
Q Consensus 168 Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~-~~~~~l~~~----~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~ 241 (1025)
|++|.+.+.+|..|.++++|+.|+|++|+ +++ .+|..++.+ ..+++|+.|+|++|.+. .++....+..+++|+
T Consensus 498 Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~ 576 (876)
T 4ecn_A 498 LYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLG 576 (876)
T ss_dssp EESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCC
T ss_pred CCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCHHHHHHHHHCCCCCCCCCEEEEECCCCC-CCCCHHHHHCCCCCC
T ss_conf 7189887527387737999899989689876566461778752330155688319982289477-618723551589889
Q ss_pred EEECCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCHHHHHHCCCC-CCEEECCCCCCCCCCCC-CCC--CCCCEEECC
Q ss_conf 88655883556678531113345121145215235894577314456-58687656667685465-578--874589845
Q 001700 242 VFDASNNHLVGAIPSFNFVFSLRILRLGSNQLSGSLPVALLQESSMM-LSELDLSLNQLEGPVGS-ITS--ATLKKVNLS 317 (1025)
Q Consensus 242 ~L~Ls~N~l~~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~~~~~~-L~~L~ls~N~l~~~~~~-~~~--~~L~~L~ls 317 (1025)
.|++++|.+. .+|.+..+++|+.|+|++|++. .+|..+... .. |+.|++++|.+...+.. ... ..|+.|+++
T Consensus 577 ~L~Ls~N~l~-~lp~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l--~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls 652 (876)
T 4ecn_A 577 LLDCVHNKVR-HLEAFGTNVKLTDLKLDYNQIE-EIPEDFCAF--TDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFS 652 (876)
T ss_dssp EEECTTSCCC-BCCCCCTTSEESEEECCSSCCS-CCCTTSCEE--CTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECC
T ss_pred EEECCCCCCC-CCHHHCCCCCCEEEECCCCCCC-CCHHHHHHC--CCCCCEEECCCCCCCCCCHHHHCCCCCCCCEEECC
T ss_conf 8989799825-6212247985007987187125-035877525--11498999849978747644522556777889770
Q ss_pred CCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCHHCCCCCCCCEEEECCCCCCCCCCCC
Q ss_conf 98556988998877665512375477863212457886466771378778989300037888899982486367885601
Q 001700 318 SNKLSGSLPARVGHCTIVDLSNNRLSGDLSRMQNWGNYVEDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAV 397 (1025)
Q Consensus 318 ~N~l~~~~p~~l~~l~~L~Ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~ 397 (1025)
+|.+.+.+|.....+.. .....|+.|+|++|.++...+..+..+++|+.|++++|.++ .+|..
T Consensus 653 ~N~l~g~ip~l~~~l~~----------------~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~ 715 (876)
T 4ecn_A 653 YNKIGSEGRNISCSMDD----------------YKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPEN 715 (876)
T ss_dssp SSCTTTTSSSCSSCTTT----------------CCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTT
T ss_pred CCCCCCCCCCCHHHHCC----------------CCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCC-CCCHH
T ss_conf 88478864320000001----------------35797688983199688659788713898899989899688-54967
Q ss_pred CCCC--------CCCCEEECCCCCCCCCCCCCCC--CCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECC
Q ss_conf 3899--------9998762479724555861222--89998789667994746689333248998554444563489853
Q 001700 398 LGTY--------PELKVIDLSLNHLNGFLLPSFF--TSTKLTDLNLSGNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDLA 467 (1025)
Q Consensus 398 l~~l--------~~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~L~~L~Ls 467 (1025)
+... ++|+.|+|++|+++ .+|..+. .+++|+.|++++|++++ +|.. ...+. +|+.|+|+
T Consensus 716 ~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~-------l~~L~--~L~~L~Ls 784 (876)
T 4ecn_A 716 SLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQ-------PLNSS--QLKAFGIR 784 (876)
T ss_dssp SSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCG-------GGGCT--TCCEEECC
T ss_pred HHCCCCCCCCCCCCCCEEECCCCCCC-CCHHHHHHCCCCCCCEEEECCCCCCC-CCHH-------HHCCC--CCCEEECC
T ss_conf 84555334321487158988899786-65277624427986989908997876-1056-------61599--98899887
Q ss_pred C------CCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCC
Q ss_conf 7------84855687322168999976285784722259885799957978788264568988
Q 001700 468 Y------NSLSGRLLPGISKFHNLVYLNLSNNKFEGSIPDGLPNGLKEFNVSFNNLSGVVPEN 524 (1025)
Q Consensus 468 ~------N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~L~~L~ls~N~l~g~~p~~ 524 (1025)
+ |.+.+.+|..+..+++|+.|+|++|++ +.+|..+.+.|+.||+++|++....+..
T Consensus 785 ~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~~~L~~LdLs~N~l~~i~~~~ 846 (876)
T 4ecn_A 785 HQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLTPQLYILDIADNPNISIDVTS 846 (876)
T ss_dssp CCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCCSSSCEEECCSCTTCEEECGG
T ss_pred CCCCCCCCCCCCCCHHHHHCCCCCCEEECCCCCC-CCCCHHHCCCCCEEECCCCCCCCCCHHH
T ss_conf 9977665632444868883699878898879978-7408766287788999799888117677
No 3
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=1.00 E-value=1 Score=443.77 Aligned_cols=469 Identities=19% Similarity=0.219 Sum_probs=336.3
Q ss_pred CHHHHHHHHHHHHHCCCCCCCCC------CCCCCCCCCCCCCCCCCC---CCEECCC-CCEEEEEECCCCCCCCCCCCCC
Q ss_conf 94569999999861588999973------468788899999999985---2248079-9889999389996013591000
Q 001700 17 GQSDFEALLQLKKGIAKDPSGQI------IDSWDTKSLSSDGCPRNW---FGITCTN-GYVTSIMLNDMGLVGNFSFPTI 86 (1025)
Q Consensus 17 ~~~~~~~ll~~k~~~~~~~~~~~------~~~w~~~~~~~d~C~~~w---~gv~C~~-~~v~~l~l~~~~l~g~~~~~~~ 86 (1025)
..+|+.||.+|+.++..+..... ..+|+.+ .|||. | .||+|+. |+|+.|+|++.++.|.++ +++
T Consensus 28 ~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~---~~~c~--w~~~~GV~C~~~~~V~~L~L~~~~l~g~lp-~~l 101 (636)
T 4eco_A 28 YIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFN---KELDM--WGAQPGVSLNSNGRVTGLSLEGFGASGRVP-DAI 101 (636)
T ss_dssp HHHHHHHHHHHHHHTTGGGCCCCC------CCCCCS---SCGGG--TTCCTTEEECTTCCEEEEECTTSCCEEEEC-GGG
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC---CCCCC--CCCCCCEEECCCCCEEEEEECCCCCCCCCC-HHH
T ss_conf 778899999999975899745477677657887779---98000--147798487678978899842766577288-578
Q ss_pred CCCCCCCEEECCCCCCCCCCCCCC-----------------------------------------------------CCC
Q ss_conf 399899988755885865788889-----------------------------------------------------999
Q 001700 87 IGLKMLCNVSVSNNQLMGNITDIG-----------------------------------------------------SIQ 113 (1025)
Q Consensus 87 ~~L~~L~~L~l~~N~~~~~~~~~~-----------------------------------------------------~l~ 113 (1025)
.+|++|+.|+|++|.+.....-++ ...
T Consensus 102 ~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 181 (636)
T 4eco_A 102 GQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRI 181 (636)
T ss_dssp GGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCC
T ss_pred HCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 56845118987688512377433453235673388888887657775541170666778877776427554654101334
Q ss_pred CCCEEEC--CCCCCCCCCCCCCCCCCCCCEEECCCCCCCCC-----------------CCCCCC--CCCCCCEEECCCCC
Q ss_conf 9999966--68848523820133899999797347745567-----------------996433--44356476444678
Q 001700 114 SLEFLDL--SHNLFHGLIPSGIVSLKNLMLLNISSNSFEGT-----------------FPSGFG--GLGKLKYLDLRANR 172 (1025)
Q Consensus 114 ~L~~LdL--s~N~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~-----------------~p~~~~--~l~~L~~L~Ls~N~ 172 (1025)
.++.+.+ ..|.+++ +|..|+++++|++|+|++|+|++. +|..++ ++++|++|+|++|.
T Consensus 182 ~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~ 260 (636)
T 4eco_A 182 TLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCP 260 (636)
T ss_dssp CCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCT
T ss_pred CHHHHHHCCCCCCCCC-CCHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCHHCCCCCHHHHHCCCCCCCEEEECCCC
T ss_conf 4213001013677750-787772564787898868823664232212222210010248632200446878889804885
Q ss_pred CCCCCHHHHHHCCCCCEEECCCCC-CCC-CCCCCCCCC---CCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEECCC
Q ss_conf 899832676420447678284475-632-247999887---545555578654666657447899998899878886558
Q 001700 173 FGGDIMHLLSQLGSVVHVDLSNNQ-FSG-SLDLGLGDS---SFISSIQYLNISENSLVGELFPHDGMPYFDNLEVFDASN 247 (1025)
Q Consensus 173 l~~~~~~~~~~l~~L~~L~Ls~N~-l~~-~~~~~l~~~---~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~ 247 (1025)
+.+.+|..|.++++|+.|+|++|+ +++ .+|..++.+ ..+++|+.|++++|.++ .++....+..+++|+.|++++
T Consensus 261 l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~ 339 (636)
T 4eco_A 261 NLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLY 339 (636)
T ss_dssp TCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCS
T ss_pred CCCCCHHHHHCCCCCCEEECCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEECCCCCCC-CCCCHHHHCCCCCCCEEECCC
T ss_conf 7762838883499978897847988766533578875430465788888989799377-667655542578889896908
Q ss_pred CCCCCCCCCCCCCCCCCCEECCCCCCCCCCCHHHHHHCCCC-CCEEECCCCCCCCCCCC-CC--CCCCCEEECCCCCCCC
Q ss_conf 83556678531113345121145215235894577314456-58687656667685465-57--8874589845985569
Q 001700 248 NHLVGAIPSFNFVFSLRILRLGSNQLSGSLPVALLQESSMM-LSELDLSLNQLEGPVGS-IT--SATLKKVNLSSNKLSG 323 (1025)
Q Consensus 248 N~l~~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~~~~~~-L~~L~ls~N~l~~~~~~-~~--~~~L~~L~ls~N~l~~ 323 (1025)
|.+.+.+|.+..+++|+.|++++|++. .+|..+... .. |+.|++++|.+...+.. .. +.+|+.|++++|.+.+
T Consensus 340 N~l~g~ip~~~~l~~L~~L~L~~N~l~-~lp~~l~~l--~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~ 416 (636)
T 4eco_A 340 NQLEGKLPAFGSEIKLASLNLAYNQIT-EIPANFCGF--TEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGS 416 (636)
T ss_dssp CCCEEECCCCEEEEEESEEECCSSEEE-ECCTTSEEE--CTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTT
T ss_pred CCCCCCHHHHCCCCCCCEEECCCCCCC-CCCHHHHHH--CCCCCEEECCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCC
T ss_conf 807051666478898898989899403-033756510--23686898529827544665533345766889774885788
Q ss_pred CCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCHHCCCCCCCCEEEECCCCCCCCCCCCCC-CC-
Q ss_conf 8899887766551237547786321245788646677137877898930003788889998248636788560138-99-
Q 001700 324 SLPARVGHCTIVDLSNNRLSGDLSRMQNWGNYVEDIHLSSNFLTGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLG-TY- 401 (1025)
Q Consensus 324 ~~p~~l~~l~~L~Ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~l~-~l- 401 (1025)
.+|..+..+..- ......|+.|+|++|.++...+..+..+++|+.|++++|.++ .+|.... ..
T Consensus 417 ~~p~~l~~~~~~--------------~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~ 481 (636)
T 4eco_A 417 VDGKNFDPLDPT--------------PFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDEN 481 (636)
T ss_dssp TTTCSSCTTCSS--------------CCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETT
T ss_pred CCHHHHCCCCCC--------------CCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCC-CCCHHHHCCCC
T ss_conf 652442002201--------------125898888977279668678788715898898989799788-73978840440
Q ss_pred ------CCCCEEECCCCCCCCCCCCCCC--CCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEC------C
Q ss_conf ------9998762479724555861222--8999878966799474668933324899855444456348985------3
Q 001700 402 ------PELKVIDLSLNHLNGFLLPSFF--TSTKLTDLNLSGNNFSGPLPLQEIQNNPSTGSTQNLSLTSLDL------A 467 (1025)
Q Consensus 402 ------~~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~L~~L~L------s 467 (1025)
++|+.|++++|+++ .+|..+. .+++|+.|++++|++++ +|.. ...+. +|+.|+| +
T Consensus 482 ~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~-------~~~l~--~L~~L~Ls~N~~ls 550 (636)
T 4eco_A 482 ENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQ-------PLNSS--TLKGFGIRNQRDAQ 550 (636)
T ss_dssp EECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCG-------GGGCS--SCCEEECCSCBCTT
T ss_pred CCCCCCCCCCEEECCCCCCC-CCCHHHHHCCCCCCCEEECCCCCCCC-CCHH-------HHCCC--CCCEEECCCCCCCC
T ss_conf 01221477338989699388-16854534458876989898998877-6823-------53088--87878898886656
Q ss_pred CCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCC
Q ss_conf 78485568732216899997628578472225988579995797878826456898
Q 001700 468 YNSLSGRLLPGISKFHNLVYLNLSNNKFEGSIPDGLPNGLKEFNVSFNNLSGVVPE 523 (1025)
Q Consensus 468 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~L~~L~ls~N~l~g~~p~ 523 (1025)
+|.+.+.+|..+..+++|+.|+|++|++ +.+|..+...|+.|++++|++.+....
T Consensus 551 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~~~L~~L~Ls~N~l~~~~~~ 605 (636)
T 4eco_A 551 GNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKITPNISVLDIKDNPNISIDLS 605 (636)
T ss_dssp CCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCCTTCCEEECCSCTTCEEECT
T ss_pred CCCCCCCCHHHHHCCCCCCEEECCCCCC-CCCCHHHHCCCCEEECCCCCCCCCCHH
T ss_conf 6731212737785699878898989947-705976838678998769987633678
No 4
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=435.32 Aligned_cols=442 Identities=29% Similarity=0.402 Sum_probs=361.1
Q ss_pred CCEEEEEECCCCCCCCCCCC--CCCCCCCCCEEECCCCCCCCCCCC-C-CCCCCCCEEECCCCCCCCCCCCC---CCCCC
Q ss_conf 98899993899960135910--003998999887558858657888-8-99999999966688485238201---33899
Q 001700 65 GYVTSIMLNDMGLVGNFSFP--TIIGLKMLCNVSVSNNQLMGNITD-I-GSIQSLEFLDLSHNLFHGLIPSG---IVSLK 137 (1025)
Q Consensus 65 ~~v~~l~l~~~~l~g~~~~~--~~~~L~~L~~L~l~~N~~~~~~~~-~-~~l~~L~~LdLs~N~i~~~~p~~---~~~l~ 137 (1025)
.+++.|+|+...+.|.++ + .+.++++|+.|++++|.+.+.++. + ..+++|++|||++|.+++..|.. +.+++
T Consensus 100 ~~L~~L~Ls~n~l~~~~~-~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~ 178 (768)
T 3rgz_A 100 ASLTSLDLSRNSLSGPVT-TLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCG 178 (768)
T ss_dssp TTCCEEECCSSEEEEEGG-GGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCT
T ss_pred CCCCEEECCCCCCCCCCC-CHHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCHHHHHHCCCC
T ss_conf 889989898985787078-9678727889998989688267747977856388999898979835885871556643589
Q ss_pred CCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 99979734774556799643344356476444678899832676420447678284475632247999887545555578
Q 001700 138 NLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSVVHVDLSNNQFSGSLDLGLGDSSFISSIQYL 217 (1025)
Q Consensus 138 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~~~l~~L~~L 217 (1025)
+|++|++++|.+++..|. ..+++|++|+|++|++.+.++. +.++++|+.|+|++|.+++..|..++.+ ++|++|
T Consensus 179 ~L~~L~Ls~n~l~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l---~~L~~L 252 (768)
T 3rgz_A 179 ELKHLAISGNKISGDVDV--SRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTC---TELKLL 252 (768)
T ss_dssp TCCEEECCSSEEESCCBC--TTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTC---SSCCEE
T ss_pred CCCEEECCCCCCCCCCCC--CCCCCCCEEECCCCCCCCCCCC-CCCCCCCCEEECCCCCCCCCCCHHHHCC---CCCCEE
T ss_conf 889898978803465784--5478689898928827887711-1269999989794885878165777448---888989
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCC-CCC-CCCCCCEECCCCCCCCCCCHHHHHHCCCCCCEEECC
Q ss_conf 654666657447899998899878886558835566785-311-133451211452152358945773144565868765
Q 001700 218 NISENSLVGELFPHDGMPYFDNLEVFDASNNHLVGAIPS-FNF-VFSLRILRLGSNQLSGSLPVALLQESSMMLSELDLS 295 (1025)
Q Consensus 218 ~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~-l~~L~~L~L~~N~l~g~~p~~~~~~~~~~L~~L~ls 295 (1025)
++++|.+.+.++.. .+++|+.|++++|.+++.+|. +.. +++|+.|++++|.+.+.+|..+..... |+.|+++
T Consensus 253 ~Ls~n~l~~~~~~~----~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~--L~~L~L~ 326 (768)
T 3rgz_A 253 NISSNQFVGPIPPL----PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSL--LESLALS 326 (768)
T ss_dssp ECCSSCCEESCCCC----CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTT--CCEEECC
T ss_pred ECCCCCCCCCCCCC----CCCCCCEEECCCCCCCCCCCHHHHHHCCCCCEEECCCCCCCCCCCHHHHCCCC--CCEEECC
T ss_conf 89888665716724----36878989791785577258888844686889989689677842367755877--6677897
Q ss_pred CCCCCCCCC---CCCCCCCCEEECCCCCCCCCCCCCCC----CCCEEECCCCCCCCCCCCCCCC--CCCCCEEEECCCCC
Q ss_conf 666768546---55788745898459855698899887----7665512375477863212457--88646677137877
Q 001700 296 LNQLEGPVG---SITSATLKKVNLSSNKLSGSLPARVG----HCTIVDLSNNRLSGDLSRMQNW--GNYVEDIHLSSNFL 366 (1025)
Q Consensus 296 ~N~l~~~~~---~~~~~~L~~L~ls~N~l~~~~p~~l~----~l~~L~Ls~n~l~~~~~~~~~~--~~~L~~L~Ls~N~l 366 (1025)
+|.+.+..+ +..+++|+.|++++|.+.+.+|..+. +++.|++++|.+.+..+..... ...|+.|++++|.+
T Consensus 327 ~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l 406 (768)
T 3rgz_A 327 SNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGF 406 (768)
T ss_dssp SSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEE
T ss_pred CCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHHHHCCCCEEECCCCCCCCCCCHHHHHCCCCCCCEEECCCCCC
T ss_conf 88525737978872488887884847843762309898632277199862787478767666533247761898977846
Q ss_pred CCCCCHHCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCC
Q ss_conf 89893000378888999824863678856013899999876247972455586122289998789667994746689333
Q 001700 367 TGMVPNQTSQFLRLTSFKVSNNSLEGDLPAVLGTYPELKVIDLSLNHLNGFLLPSFFTSTKLTDLNLSGNNFSGPLPLQE 446 (1025)
Q Consensus 367 ~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 446 (1025)
++.+|..+..+++|+.|++++|.+++.+|..+..+++|+.|++++|++.+..|..+..+++|+.|++++|++.+.+|..
T Consensus 407 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~- 485 (768)
T 3rgz_A 407 TGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSG- 485 (768)
T ss_dssp EEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGG-
T ss_pred CCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHCCCCCCEEEEECCCCCCCCCCHH-
T ss_conf 5424877756898798989588466854677744998898989788154718978828777329990199513758878-
Q ss_pred CCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCCCCC--CCCEEECCCCCCCCCCCCC
Q ss_conf 24899855444456348985378485568732216899997628578472225988579--9957978788264568988
Q 001700 447 IQNNPSTGSTQNLSLTSLDLAYNSLSGRLLPGISKFHNLVYLNLSNNKFEGSIPDGLPN--GLKEFNVSFNNLSGVVPEN 524 (1025)
Q Consensus 447 ~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~--~L~~L~ls~N~l~g~~p~~ 524 (1025)
...+. +|+.|+|++|.+++.+|.+++.+++|+.|+|++|+++|.+|..+.. .|+.|++++|+++|.+|..
T Consensus 486 ------l~~l~--~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~ 557 (768)
T 3rgz_A 486 ------LSNCT--NLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAA 557 (768)
T ss_dssp ------GGGCT--TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGG
T ss_pred ------HHCCC--CCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCHH
T ss_conf ------81699--8998975399518968768856899998989789433748877708898998989888468827957
Q ss_pred CCCC
Q ss_conf 9799
Q 001700 525 LRNF 528 (1025)
Q Consensus 525 l~~~ 528 (1025)
+...
T Consensus 558 ~~~~ 561 (768)
T 3rgz_A 558 MFKQ 561 (768)
T ss_dssp GGTT
T ss_pred HHCC
T ss_conf 8604
No 5
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=409.69 Aligned_cols=469 Identities=19% Similarity=0.151 Sum_probs=295.1
Q ss_pred CCCCCCCCCEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCC-C-CCCCCCCCCEEECCCCCCCCC
Q ss_conf 99999852248079988999938999601359100039989998875588586578-8-889999999996668848523
Q 001700 51 DGCPRNWFGITCTNGYVTSIMLNDMGLVGNFSFPTIIGLKMLCNVSVSNNQLMGNI-T-DIGSIQSLEFLDLSHNLFHGL 128 (1025)
Q Consensus 51 d~C~~~w~gv~C~~~~v~~l~l~~~~l~g~~~~~~~~~L~~L~~L~l~~N~~~~~~-~-~~~~l~~L~~LdLs~N~i~~~ 128 (1025)
||..+.|..|-+-...++.|+|+...+.+..+ .++.++++|+.|++++|.+.+.+ + .|+++++|++|+|++|.|++.
T Consensus 10 dcs~~~L~~vP~lp~~l~~LdLs~N~i~~i~~-~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~ 88 (844)
T 3j0a_A 10 FYRFCNLTQVPQVLNTTERLLLSFNYIRTVTA-SSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFL 88 (844)
T ss_dssp EESCCCSSCCCSSCTTCCEEEEESCCCCEECS-SSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEE
T ss_pred ECCCCCCCCCCCCCCCCCEEECCCCCCCCCCH-HHCCCCCCCEEEECCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCC
T ss_conf 82379977789899986888887786783296-67766213708867899774441977853787788887989958531
Q ss_pred CCCCCCCCCCCCEEECCCCCCCCCCCCC--CCCCCCCCEEECCCCCCCCCCH-HHHHHCCCCCEEECCCCCCCCCCCCCC
Q ss_conf 8201338999997973477455679964--3344356476444678899832-676420447678284475632247999
Q 001700 129 IPSGIVSLKNLMLLNISSNSFEGTFPSG--FGGLGKLKYLDLRANRFGGDIM-HLLSQLGSVVHVDLSNNQFSGSLDLGL 205 (1025)
Q Consensus 129 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~--~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~l 205 (1025)
.|..|.++++|++|+|++|.+++..|.. |.++++|++|+|++|.+++..+ ..|.++++|+.|+|++|.+++..+..+
T Consensus 89 ~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l 168 (844)
T 3j0a_A 89 HPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHEL 168 (844)
T ss_dssp CTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGG
T ss_pred CHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHHHCCCCCEEECCCCCCCEECHHHC
T ss_conf 97671578665870176788973404676455667999888987864232566557638898989898984776678875
Q ss_pred CCCCCCCCCCEEECCCCCCCCCCCCCCCCCCC------------------------------------------------
Q ss_conf 88754555557865466665744789999889------------------------------------------------
Q 001700 206 GDSSFISSIQYLNISENSLVGELFPHDGMPYF------------------------------------------------ 237 (1025)
Q Consensus 206 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l------------------------------------------------ 237 (1025)
..+. .++|+.|+++.|.+.+..+.. +..+
T Consensus 169 ~~l~-~~~L~~L~L~~n~l~~~~~~~--~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~ 245 (844)
T 3j0a_A 169 EPLQ-GKTLSFFSLAANSLYSRVSVD--WGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGA 245 (844)
T ss_dssp HHHH-HCSSCCCEECCSBSCCCCCCC--CCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBC
T ss_pred CCCC-CCCCCEEECCCCCCCCCCCCC--HHHCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCCEECCCCCCCC
T ss_conf 3556-775035789788666554553--3223772235740079657886865677888764274410011212122346
Q ss_pred --------------------CCCCEEECCCCCCCCCCCC-CCCCCCCCCEECCCCCCCCCCCHHHHHHCCCCCCEEECCC
Q ss_conf --------------------9878886558835566785-3111334512114521523589457731445658687656
Q 001700 238 --------------------DNLEVFDASNNHLVGAIPS-FNFVFSLRILRLGSNQLSGSLPVALLQESSMMLSELDLSL 296 (1025)
Q Consensus 238 --------------------~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~L~~N~l~g~~p~~~~~~~~~~L~~L~ls~ 296 (1025)
.+|+.|++++|.+.+..+. +..+++|+.|+|++|++.+..|..+.... .|+.|++++
T Consensus 246 ~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~--~L~~L~Ls~ 323 (844)
T 3j0a_A 246 GFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLD--NLQVLNLSY 323 (844)
T ss_dssp SSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCS--SCCEEEEES
T ss_pred CCCCCCCCCCCHHHHHCCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCHHHHCCCC--CCCEEECCC
T ss_conf 644456688985565255547861898979945515863452589999998979818987968836888--999898989
Q ss_pred CCCCCC--CCCCCCCCCCEEECCCCCCCCCCCCC---CCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCC
Q ss_conf 667685--46557887458984598556988998---8776655123754778632124578864667713787789893
Q 001700 297 NQLEGP--VGSITSATLKKVNLSSNKLSGSLPAR---VGHCTIVDLSNNRLSGDLSRMQNWGNYVEDIHLSSNFLTGMVP 371 (1025)
Q Consensus 297 N~l~~~--~~~~~~~~L~~L~ls~N~l~~~~p~~---l~~l~~L~Ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p 371 (1025)
|.+.+. ..+..+++|+.|++++|.+.+..+.. +.+|+.|++++|.+.+... ...|+.|++++|.++. +|
T Consensus 324 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~-----~~~L~~L~l~~N~l~~-l~ 397 (844)
T 3j0a_A 324 NLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHF-----IPSIPDIFLSGNKLVT-LP 397 (844)
T ss_dssp CCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSS-----CCSCSEEEEESCCCCC-CC
T ss_pred CCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCC-----CCCCCHHCCCCCCCCC-CC
T ss_conf 97885187884689999989898998776286661378889998898997786168-----8982320058997231-45
Q ss_pred HHCCCCCCCCEEEECCCCCCCCC-CCCCCCCCCCCEEECCCCCCCCCCCC-CCCCCCCCCEEECCCCCCCCCCCCCCCCC
Q ss_conf 00037888899982486367885-60138999998762479724555861-22289998789667994746689333248
Q 001700 372 NQTSQFLRLTSFKVSNNSLEGDL-PAVLGTYPELKVIDLSLNHLNGFLLP-SFFTSTKLTDLNLSGNNFSGPLPLQEIQN 449 (1025)
Q Consensus 372 ~~~~~l~~L~~L~Ls~N~l~g~~-p~~l~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~ 449 (1025)
.. ...++.|++++|.+++.. +..+..+++|+.|++++|++++..+. .+..+++|+.|++++|.+++..+.... .
T Consensus 398 ~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~-~ 473 (844)
T 3j0a_A 398 KI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELC-W 473 (844)
T ss_dssp CC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCC-S
T ss_pred CC---CCCCCEEECCCCCCCCCCHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-H
T ss_conf 54---5543122145675345755666512776666667787125555433356687310024777736441013553-5
Q ss_pred CCCCCCCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCC
Q ss_conf 99855444456348985378485568732216899997628578472225988579995797878826456898897999
Q 001700 450 NPSTGSTQNLSLTSLDLAYNSLSGRLLPGISKFHNLVYLNLSNNKFEGSIPDGLPNGLKEFNVSFNNLSGVVPENLRNFP 529 (1025)
Q Consensus 450 ~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~L~~L~ls~N~l~g~~p~~l~~~~ 529 (1025)
...... .+|+.|+|++|.+++.++..+..+++|+.|+|++|+|++..|..+...|+.|++++|.+++.+|..+..+.
T Consensus 474 -~~~~~l--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~L~ 550 (844)
T 3j0a_A 474 -DVFEGL--SHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPANLEILDISRNQLLAPNPDVFVSLS 550 (844)
T ss_dssp -SCSSCB--CCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCCSCCCEEEEEEECCCCCCSCCCSSCC
T ss_pred -HHHCCC--CCCCEEECCCCCCCCCCHHHCCCHHHHHEEECCCCCCCCCCHHHHHCCCCEEECCCCCCCCCCHHHHCCCC
T ss_conf -554475--53657778898565539557045012215699999787457101100455888988847888966837768
Q ss_pred CCCCCCCCCC
Q ss_conf 9887789999
Q 001700 530 DSAFHPGNSL 539 (1025)
Q Consensus 530 ~~~~~~~n~~ 539 (1025)
...+. +|+.
T Consensus 551 ~l~l~-~Np~ 559 (844)
T 3j0a_A 551 VLDIT-HNKF 559 (844)
T ss_dssp EEEEE-EECC
T ss_pred EEEEC-CCCC
T ss_conf 89931-9970
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=1.00 E-value=1 Score=400.19 Aligned_cols=458 Identities=19% Similarity=0.163 Sum_probs=305.4
Q ss_pred CCCCC--CCCCEECCC-----------CCEEEEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCC-CCCCCCCC
Q ss_conf 99999--852248079-----------98899993899960135910003998999887558858657888-89999999
Q 001700 51 DGCPR--NWFGITCTN-----------GYVTSIMLNDMGLVGNFSFPTIIGLKMLCNVSVSNNQLMGNITD-IGSIQSLE 116 (1025)
Q Consensus 51 d~C~~--~w~gv~C~~-----------~~v~~l~l~~~~l~g~~~~~~~~~L~~L~~L~l~~N~~~~~~~~-~~~l~~L~ 116 (1025)
..|.| .+..|.|.. ..++.|++++..+.+..+ .++.++++|+.|++++|.+.+..+. |+.+++|+
T Consensus 6 ~~C~~~~~~~~~~c~~~~l~~iP~~l~~~l~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~ 84 (606)
T 3t6q_A 6 QKCIEKEVNKTYNCENLGLNEIPGTLPNSTECLEFSFNVLPTIQN-TTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLD 84 (606)
T ss_dssp CCCEEEETTTEEECTTSCCSSCCTTSCTTCCEEECTTCCCSEECT-TTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCC
T ss_pred CCEECCCCCCEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCH-HHHCCCCCCEEEECCCCCCCEECHHHCCCCCCCC
T ss_conf 860123687237777798062867789867589815873471796-6725676652897889835524851136843367
Q ss_pred EEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHHHCCCCCEEECCCCC
Q ss_conf 99666884852382013389999979734774556799643344356476444678899832676420447678284475
Q 001700 117 FLDLSHNLFHGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGGDIMHLLSQLGSVVHVDLSNNQ 196 (1025)
Q Consensus 117 ~LdLs~N~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 196 (1025)
+|+|++|.+++..|..|+.+++|++|+|++|+|++..+..|+++++|++|+|++|++.+.....+..+++|+.|++++|.
T Consensus 85 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 164 (606)
T 3t6q_A 85 TLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNA 164 (606)
T ss_dssp EEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSC
T ss_pred EEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCCHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCC
T ss_conf 64488985654586552344215376521267665781012237822389887983411476545687656877765684
Q ss_pred CCCCCCCCCCCCCCCCCCC--EEECCCCCCCCCCCCCCCCCC--------------------------------------
Q ss_conf 6322479998875455555--786546666574478999988--------------------------------------
Q 001700 197 FSGSLDLGLGDSSFISSIQ--YLNISENSLVGELFPHDGMPY-------------------------------------- 236 (1025)
Q Consensus 197 l~~~~~~~l~~~~~l~~L~--~L~L~~N~l~~~~~~~~~~~~-------------------------------------- 236 (1025)
+++..+..++.+ ++|+ .|++++|.+.+..+.. +..
T Consensus 165 l~~~~~~~~~~l---~~L~~l~L~l~~n~l~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~ 239 (606)
T 3t6q_A 165 IHYLSKEDMSSL---QQATNLSLNLNGNDIAGIEPGA--FDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMD 239 (606)
T ss_dssp CCEECHHHHHTT---TTCCSEEEECTTCCCCEECTTT--TTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSC
T ss_pred CCCCCHHHHHHH---CCCCEEEEECCCCCCCCCCHHH--HHHCCCCCCCCCCCHHHHHHHHHCCCCCHHHEECHHHCCCC
T ss_conf 455496563322---1564038966798147548667--30010013556772667777651335644220020110264
Q ss_pred -----------C--CCCCEEECCCCCCCCCCCC-CCCCCCCCCEECCCCCCCCCCCHHHHHHCCCCCCEEECCCCCCCCC
Q ss_conf -----------9--9878886558835566785-3111334512114521523589457731445658687656667685
Q 001700 237 -----------F--DNLEVFDASNNHLVGAIPS-FNFVFSLRILRLGSNQLSGSLPVALLQESSMMLSELDLSLNQLEGP 302 (1025)
Q Consensus 237 -----------l--~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~L~~N~l~g~~p~~~~~~~~~~L~~L~ls~N~l~~~ 302 (1025)
+ .+++.+++++|.+.+..+. +..+++|+.|++++|+++ .+|..+.... .|+.|++++|.+.+.
T Consensus 240 ~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~--~L~~L~l~~n~l~~~ 316 (606)
T 3t6q_A 240 DEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLS--TLKKLVLSANKFENL 316 (606)
T ss_dssp CCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCT--TCCEEECTTCCCSBG
T ss_pred CCCCCHHHHCHHHCCCEEEEEEECCCCCCCCHHHHCCCCCCCEEECCCCCCC-CCCHHHCCCC--CCCEEECCCCCCCCC
T ss_conf 1226866743032075059994457658557777445667888956288267-7782141654--688897716876867
Q ss_pred --CCCCCCCCCCEEECCCCCCCCCCCC----CCCCCCEEECCCCCCCCCC--CCCCCCCCCCCEEEECCCCCCCCCCHHC
Q ss_conf --4655788745898459855698899----8877665512375477863--2124578864667713787789893000
Q 001700 303 --VGSITSATLKKVNLSSNKLSGSLPA----RVGHCTIVDLSNNRLSGDL--SRMQNWGNYVEDIHLSSNFLTGMVPNQT 374 (1025)
Q Consensus 303 --~~~~~~~~L~~L~ls~N~l~~~~p~----~l~~l~~L~Ls~n~l~~~~--~~~~~~~~~L~~L~Ls~N~l~~~~p~~~ 374 (1025)
.....+++|+.|++++|.+.+.+|. .+.+++.|++++|.+.+.. +..+.....|+.|++++|.+.+..|..+
T Consensus 317 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 396 (606)
T 3t6q_A 317 CQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAF 396 (606)
T ss_dssp GGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTT
T ss_pred CHHHHHCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCHHCCCCCCCCEEECCCCCCCCCCHHHH
T ss_conf 60233015768988898997444346245506675898878899666456752210567888989898996775788873
Q ss_pred CCCCCCCEEEECCCCCCCCCCC-CCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCC-CCCCCCCCCCC
Q ss_conf 3788889998248636788560-138999998762479724555861222899987896679947466-89333248998
Q 001700 375 SQFLRLTSFKVSNNSLEGDLPA-VLGTYPELKVIDLSLNHLNGFLLPSFFTSTKLTDLNLSGNNFSGP-LPLQEIQNNPS 452 (1025)
Q Consensus 375 ~~l~~L~~L~Ls~N~l~g~~p~-~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~~~~~ 452 (1025)
..+++|+.|++++|.+.+..+. .+..+++|+.|++++|.+.+..+..+..+++|+.|++++|++.+. ++.. ..
T Consensus 397 ~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-----~~ 471 (606)
T 3t6q_A 397 KECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKT-----NS 471 (606)
T ss_dssp TTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSS-----CG
T ss_pred CCCCCCCEEECCCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCC-----HH
T ss_conf 4774577687888867775652124176558889898985577687787378878889898998885434543-----12
Q ss_pred CCCCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCCCCC--CCCEEECCCCCCCCCCCCCC
Q ss_conf 55444456348985378485568732216899997628578472225988579--99579787882645689889
Q 001700 453 TGSTQNLSLTSLDLAYNSLSGRLLPGISKFHNLVYLNLSNNKFEGSIPDGLPN--GLKEFNVSFNNLSGVVPENL 525 (1025)
Q Consensus 453 ~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~--~L~~L~ls~N~l~g~~p~~l 525 (1025)
.... .+|+.|++++|.+++..|..+..+++|+.|+|++|++++.+|..+.. .| .|++++|.+++.+|..+
T Consensus 472 ~~~l--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~ 543 (606)
T 3t6q_A 472 LQTL--GRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLL 543 (606)
T ss_dssp GGGC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGH
T ss_pred HCCC--CCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCC-EEECCCCCCCCCCHHHC
T ss_conf 4048--876688799996670686463265678889898980686896684756651-89876894142687662
No 7
>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}
Probab=1.00 E-value=1 Score=397.32 Aligned_cols=256 Identities=23% Similarity=0.372 Sum_probs=210.6
Q ss_pred CCEEEEECCEEEEEEEEC------CCCEEEEEECCCCCHHCHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCCEEEEEEE
Q ss_conf 763531033699999956------99899999925440111999999999995599986123246353578980499996
Q 001700 737 AEVIGRSCHGTLYKATLD------SGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISN 810 (1025)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~------~g~~vavK~~~~~~~~~~~~~~~E~~~l~~l~Hpniv~l~g~~~~~~~~~~~lv~e 810 (1025)
.+.||+|+||+||+|+++ ++..||||+++.......++|.+|++++++++|||||+++|+|. +....++|||
T Consensus 46 ~~~LG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~--~~~~~~lV~E 123 (329)
T 4aoj_A 46 KWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRFFGVCT--EGRPLLMVFE 123 (329)
T ss_dssp EEEEEECSSEEEEEEEESSSCC---CEEEEEEEESCCSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEC--SSSSEEEEEE
T ss_pred EEEECCCCCCEEEEEEECCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEE--ECCEEEEEEE
T ss_conf 77971477848998998786657789699999977579799999999999998589989996989999--8998999998
Q ss_pred CCCCCCHHHHHHHCCCC----------CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCEEEEC
Q ss_conf 14654299998212999----------99999999999999999999999863999712588999977606999789962
Q 001700 811 YINAQSLAVYLQETDPR----------KLPPLSIDERLRVAVDVARCLNYLHNERAIPHGNLKSTNILLEAPTMNAVLTD 880 (1025)
Q Consensus 811 ~~~~gsL~~~l~~~~~~----------~~~~l~~~~~~~i~~~ia~aL~~LH~~~~ivHrdlkp~NILl~~~~~~~kl~D 880 (1025)
|+++|+|.++++..... ...+++|.+++.|+.|||+||+|||+ .+|+||||||+|||++. ++.+||+|
T Consensus 124 y~~~G~L~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~-~~iiHRDLKp~NILl~~-~~~~Ki~D 201 (329)
T 4aoj_A 124 YMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLAG-LHFVHRDLATRNCLVGQ-GLVVKIGD 201 (329)
T ss_dssp CCTTCBHHHHHHTSSCC-----------CCSCCHHHHHHHHHHHHHHHHHHHH-TTCCCSCCCGGGEEEET-TTEEEECC
T ss_pred CCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHC-CCEECCCCCHHHEEECC-CCCEEECC
T ss_conf 27999399999860754100122112457889999999999999999999840-88422666676489889-99689766
Q ss_pred CCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHC-CCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 2352102568875-510357445447533346888999970158999999999991-99899843359997525799999
Q 001700 881 YSLHRILTSAGTA-DQVLNAGALGYRPPEFASTSKPCPSLKSDVYAFGIILLELLT-GKSSGEIVCVDPGVVDLTDWVRL 958 (1025)
Q Consensus 881 fgla~~~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~s~~~DV~SlGvil~ellt-G~~P~~~~~~~~~~~~l~~~~~~ 958 (1025)
||+++........ ......||+.|||||++.+.. ++.++|||||||++|||+| |+.||.... ..++.+.+
T Consensus 202 FGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~--~~~~sDvwS~Gvvl~Ellt~G~~Pf~~~~----~~~~~~~i-- 273 (329)
T 4aoj_A 202 FGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRK--FTTESDVWSFGVVLWEIFTYGKQPWYQLS----NTEAIDCI-- 273 (329)
T ss_dssp CC----------------CCCCGGGCCHHHHTTCC--CCHHHHHHHHHHHHHHHHTTSCCTTCSSC----HHHHHHHH--
T ss_pred CCCCEECCCCCCCEECCCCCCCCCCCCHHHHCCCC--CCCCCCCCCHHHHHHHHHCCCCCCCCCCC----HHHHHHHH--
T ss_conf 60333656787530047645565665826544799--99663001057899999828999999989----99999999--
Q ss_pred HHHHCCCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCC-CCCCCHHHHHHHHHHCCCC
Q ss_conf 975216663102342289999996589999999998813999-9999989999999630035
Q 001700 959 LALENRSGECFDRLIMDGHDMEQPPRILSDMLQVALRCILPA-SERPDMMSVFEELSTIVLE 1019 (1025)
Q Consensus 959 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~~-~~RPs~~ev~~~L~~i~~~ 1019 (1025)
..+.+++.+..++.++.+++.+||+.+ ++||||.||++.|+.+.+.
T Consensus 274 ---------------~~g~~~~~p~~~~~~~~~li~~cl~~dP~~RPs~~ei~~~L~~l~~~ 320 (329)
T 4aoj_A 274 ---------------TQGRELERPRACPPEVYAIMRGCWQREPQQRHSIKDVHARLQALAQA 320 (329)
T ss_dssp ---------------HHTCCCCCCTTCCHHHHHHHHHHCCSSTTTSCCHHHHHHHHHHHHHS
T ss_pred ---------------HCCCCCCCCCCCCHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHC
T ss_conf ---------------80898998644639999999997475965792999999999987458
No 8
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=1.00 E-value=1 Score=395.91 Aligned_cols=442 Identities=21% Similarity=0.154 Sum_probs=265.6
Q ss_pred CCEECCC-----------CCEEEEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCC-CCCCCCCCEEECCCCCC
Q ss_conf 2248079-----------98899993899960135910003998999887558858657888-89999999996668848
Q 001700 58 FGITCTN-----------GYVTSIMLNDMGLVGNFSFPTIIGLKMLCNVSVSNNQLMGNITD-IGSIQSLEFLDLSHNLF 125 (1025)
Q Consensus 58 ~gv~C~~-----------~~v~~l~l~~~~l~g~~~~~~~~~L~~L~~L~l~~N~~~~~~~~-~~~l~~L~~LdLs~N~i 125 (1025)
..|.|+. ..++.|++++..+.+..+ ..+.++++|+.|++++|.+.+..+. |+.+++|++|+|++|.+
T Consensus 14 ~~~~c~~~~l~~ip~~~~~~l~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l 92 (606)
T 3vq2_A 14 ITYQCMDQKLSKVPDDIPSSTKNIDLSFNPLKILKS-YSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPI 92 (606)
T ss_dssp TEEECTTSCCSSCCTTSCTTCCEEECTTSCCCEECT-TTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred CCEECCCCCCCCCCCCCCCCCCEEECCCCCCCEECH-HHCCCCCCCCEEECCCCCCCCCCHHHHHCHHHCCEEECCCCCC
T ss_conf 705746888451898888876788788897577375-4555776674886887736643977730601068867879856
Q ss_pred CCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCC-CCHHHHHHCCCCCEEECCCCCCCCCCCCC
Q ss_conf 52382013389999979734774556799643344356476444678899-83267642044767828447563224799
Q 001700 126 HGLIPSGIVSLKNLMLLNISSNSFEGTFPSGFGGLGKLKYLDLRANRFGG-DIMHLLSQLGSVVHVDLSNNQFSGSLDLG 204 (1025)
Q Consensus 126 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 204 (1025)
++..|..|+++++|++|+|++|++++..+..|+++++|++|+|++|.+.+ .+|..|.++++|+.|+|++|++++..+..
T Consensus 93 ~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~ 172 (606)
T 3vq2_A 93 QSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVND 172 (606)
T ss_dssp CCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTT
T ss_pred CCCCHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCEECHHHHHHCCCCCEEECCCCCCEECCHHH
T ss_conf 30485220786537888703775554451134898877989687885232530686732677778876688531057334
Q ss_pred CCCCCCCCC-CCEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCC-------------------------------
Q ss_conf 988754555-557865466665744789999889987888655883556-------------------------------
Q 001700 205 LGDSSFISS-IQYLNISENSLVGELFPHDGMPYFDNLEVFDASNNHLVG------------------------------- 252 (1025)
Q Consensus 205 l~~~~~l~~-L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~------------------------------- 252 (1025)
++.+..++. +..|++++|.+.+ .+...+... +|+.|++++|.+.+
T Consensus 173 ~~~l~~L~~~l~~L~l~~n~l~~--~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~ 249 (606)
T 3vq2_A 173 LQFLRENPQVNLSLDMSLNPIDF--IQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEI 249 (606)
T ss_dssp THHHHHCTTCCCEEECTTCCCCE--ECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSC
T ss_pred HHHHHCCCCCCCEEECCCCCCCE--ECCCCCCCC-EEEEEECCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 12120342002430046897532--571105676-043352467856166778886026656523141111036774102
Q ss_pred ---------------------------CCCCCCCCCCCCCEECCCCCCCCCCCHHHHHHCCCCCCEEECCCCCCCCCCCC
Q ss_conf ---------------------------67853111334512114521523589457731445658687656667685465
Q 001700 253 ---------------------------AIPSFNFVFSLRILRLGSNQLSGSLPVALLQESSMMLSELDLSLNQLEGPVGS 305 (1025)
Q Consensus 253 ---------------------------~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~~~~~~L~~L~ls~N~l~~~~~~ 305 (1025)
..+.+..+.+|+.|++++|.+. .+| .+... ..|+.|++++|.+...+..
T Consensus 250 ~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~l~-~l~~~--~~L~~L~l~~n~l~~lp~~ 325 (606)
T 3vq2_A 250 FEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIK-YLE-DVPKH--FKWQSLSIIRCQLKQFPTL 325 (606)
T ss_dssp CCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCC-CCC-CCCTT--CCCSEEEEESCCCSSCCCC
T ss_pred CCHHHHHHHHHCCHHHEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCH-HHH-HCCCC--CCCCEEECCCCCCCCCCCC
T ss_conf 6817766665434745012366555543222354887898771476604-435-43340--1177897646667654667
Q ss_pred CCCCCCCEEECCCCCCCCCCC-CCCCCCCEEECCCCCCCCCC--CCCCCCCCCCCEEEECCCCCCCCCCHHCCCCCCCCE
Q ss_conf 578874589845985569889-98877665512375477863--212457886466771378778989300037888899
Q 001700 306 ITSATLKKVNLSSNKLSGSLP-ARVGHCTIVDLSNNRLSGDL--SRMQNWGNYVEDIHLSSNFLTGMVPNQTSQFLRLTS 382 (1025)
Q Consensus 306 ~~~~~L~~L~ls~N~l~~~~p-~~l~~l~~L~Ls~n~l~~~~--~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 382 (1025)
.++.|+.|++++|...+.++ ..+.++++|++++|.+.+.. +..+.....|+.|++++|.+.+ +|..+..+++|+.
T Consensus 326 -~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~ 403 (606)
T 3vq2_A 326 -DLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQH 403 (606)
T ss_dssp -CCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCE
T ss_pred -CCCCCCEEECCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCC-CHHHCCCCCCCCE
T ss_conf -88755644544786853100024898887977587368775201221467755486788995300-0554068888896
Q ss_pred EEECCCCCCCCCC-CCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCC-CCCCCCCCCCCCCCCCCCC
Q ss_conf 9824863678856-0138999998762479724555861222899987896679947466-8933324899855444456
Q 001700 383 FKVSNNSLEGDLP-AVLGTYPELKVIDLSLNHLNGFLLPSFFTSTKLTDLNLSGNNFSGP-LPLQEIQNNPSTGSTQNLS 460 (1025)
Q Consensus 383 L~Ls~N~l~g~~p-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~~~~~~~~~~~~~ 460 (1025)
|++++|.+.+..| ..+..+++|+.|++++|++++..+..+..+++|+.|++++|++.+. +|.. ..... +
T Consensus 404 L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-------~~~l~--~ 474 (606)
T 3vq2_A 404 LDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNV-------FANTT--N 474 (606)
T ss_dssp EECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSC-------CTTCT--T
T ss_pred EECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHH-------HCCCC--C
T ss_conf 58988705875376456462137889896897874335553477878989898983798546776-------04578--8
Q ss_pred CCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCCCCC--CCCEEECCCCCCC
Q ss_conf 348985378485568732216899997628578472225988579--9957978788264
Q 001700 461 LTSLDLAYNSLSGRLLPGISKFHNLVYLNLSNNKFEGSIPDGLPN--GLKEFNVSFNNLS 518 (1025)
Q Consensus 461 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~--~L~~L~ls~N~l~ 518 (1025)
|+.|++++|.+++.+|..+..+++|+.|+|++|++++.+|..+.. .|+.|++++|+++
T Consensus 475 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 534 (606)
T 3vq2_A 475 LTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE 534 (606)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC
T ss_pred CCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHCCCCCCCCEEECCCCCCC
T ss_conf 998989888577648656154646898989899578748777068876898889898376
No 9
>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*
Probab=1.00 E-value=1 Score=395.27 Aligned_cols=256 Identities=20% Similarity=0.354 Sum_probs=209.7
Q ss_pred CCEEEEECCEEEEEEEEC------CCCEEEEEECCCCCHHCHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCCEEEEEEE
Q ss_conf 763531033699999956------99899999925440111999999999995599986123246353578980499996
Q 001700 737 AEVIGRSCHGTLYKATLD------SGSILAVKRLREGIAKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVISN 810 (1025)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~------~g~~vavK~~~~~~~~~~~~~~~E~~~l~~l~Hpniv~l~g~~~~~~~~~~~lv~e 810 (1025)
.+.||+|+||+||+|++. ++..||||+++.......++|.+|++++++++|||||+++|+|. +....++|||
T Consensus 18 ~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~--~~~~~~lV~E 95 (299)
T 4asz_A 18 KRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKFYGVCV--EGDPLIMVFE 95 (299)
T ss_dssp EEEEEC--CCCEEEEEECSCC----CEEEEEEEECSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEC--SSSSEEEEEE
T ss_pred EEEEEECCCCEEEEEEECCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEE--ECCEEEEEEE
T ss_conf 24982078829999998776667788799999967778589999999999998589988862879995--6998999998
Q ss_pred CCCCCCHHHHHHHCC--------CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCEEEECCC
Q ss_conf 146542999982129--------999999999999999999999999986399971258899997760699978996223
Q 001700 811 YINAQSLAVYLQETD--------PRKLPPLSIDERLRVAVDVARCLNYLHNERAIPHGNLKSTNILLEAPTMNAVLTDYS 882 (1025)
Q Consensus 811 ~~~~gsL~~~l~~~~--------~~~~~~l~~~~~~~i~~~ia~aL~~LH~~~~ivHrdlkp~NILl~~~~~~~kl~Dfg 882 (1025)
|+++|+|.++++... ......++|.+++.|+.|||+||+|||+ ++|+||||||+|||++. ++.+||+|||
T Consensus 96 y~~~G~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~-~~iiHRDlKp~NILl~~-~~~~Ki~DFG 173 (299)
T 4asz_A 96 YMKHGDLNKFLRAHGPDAVLMAEGNPPTELTQSQMLHIAQQIAAGMVYLAS-QHFVHRDLATRNCLVGE-NLLVKIGDFG 173 (299)
T ss_dssp CCTTCBHHHHHHHTSHHHHHC----CCCCCCHHHHHHHHHHHHHHHHHHHH-TTCCCSCCSGGGEEECG-GGCEEECCCS
T ss_pred CCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH-CCCCCCCCCHHHEEECC-CCCEEECCCC
T ss_conf 589996899998608642111235777889999999999999999999975-99046765776389879-9868988730
Q ss_pred CCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHC-CCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 521025688755-10357445447533346888999970158999999999991-9989984335999752579999997
Q 001700 883 LHRILTSAGTAD-QVLNAGALGYRPPEFASTSKPCPSLKSDVYAFGIILLELLT-GKSSGEIVCVDPGVVDLTDWVRLLA 960 (1025)
Q Consensus 883 la~~~~~~~~~~-~~~~~gt~~y~aPE~~~~~~~~~s~~~DV~SlGvil~ellt-G~~P~~~~~~~~~~~~l~~~~~~~~ 960 (1025)
+|+......... .....||+.|||||++.+.. ++.++|||||||++|||+| |+.||.... ..++... .
T Consensus 174 la~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~--~~~k~DVwS~Gvvl~Ellt~G~~Pf~~~~----~~~~~~~---i- 243 (299)
T 4asz_A 174 MSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRK--FTTESDVWSLGVVLWEIFTYGKQPWYQLS----NNEVIEC---I- 243 (299)
T ss_dssp CHHHHTGGGCEEETTTEEECGGGCCHHHHHHCC--CCHHHHHHHHHHHHHHHHTTTCCTTTTSC----HHHHHHH---H-
T ss_pred CCEECCCCCCEEECCCEECCHHHCCHHHHCCCC--CCCHHHHHHHHHHHHHHHCCCCCCCCCCC----HHHHHHH---H-
T ss_conf 010067887416647513470103889870799--97036677889999999808999999989----9999999---9-
Q ss_pred HHCCCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCC-CCCCCHHHHHHHHHHCCCC
Q ss_conf 5216663102342289999996589999999998813999-9999989999999630035
Q 001700 961 LENRSGECFDRLIMDGHDMEQPPRILSDMLQVALRCILPA-SERPDMMSVFEELSTIVLE 1019 (1025)
Q Consensus 961 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~~-~~RPs~~ev~~~L~~i~~~ 1019 (1025)
..+..++.+..++.++.+++.+||+.+ ++||||+||++.|+++.+.
T Consensus 244 -------------~~~~~~~~p~~~~~~~~~li~~cl~~dP~~RPs~~~i~~~L~~~~~~ 290 (299)
T 4asz_A 244 -------------TQGRVLQRPRTCPQEVYELMLGCWQREPHMRKNIKGIHTLLQNLAKA 290 (299)
T ss_dssp -------------HHTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred -------------HCCCCCCCCCCCHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHC
T ss_conf -------------80898899741439999999997687966892999999999877763
No 10
>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A
Probab=1.00 E-value=1 Score=392.02 Aligned_cols=254 Identities=22% Similarity=0.323 Sum_probs=207.1
Q ss_pred CCEEEEECCEEEEEEEEC------CCCEEEEEECCCCC-HHCHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCCEEEEEE
Q ss_conf 763531033699999956------99899999925440-11199999999999559998612324635357898049999
Q 001700 737 AEVIGRSCHGTLYKATLD------SGSILAVKRLREGI-AKGKKEFAREVKKLGNIKHPNLVSLQGYYWGPKEHEKLVIS 809 (1025)
Q Consensus 737 ~~~iG~G~~g~Vy~~~~~------~g~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~Hpniv~l~g~~~~~~~~~~~lv~ 809 (1025)
.+.||+|+||+||+|++. +++.||||+++... ....++|.+|+.++++++|||||+++|+|. .....++||
T Consensus 31 ~~~lG~G~fG~Vykg~~~~~~~~~~~~~VAvK~l~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~--~~~~~~lV~ 108 (308)
T 4gt4_A 31 MEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRARLQHPNVVCLLGVVT--KDQPLSMIF 108 (308)
T ss_dssp EEEEEECSSCEEEEEEEC-------CEEEEEEECCC-CCC-CHHHHHHHHHHHHHCCCTTBCCEEEEEC--SSSSCEEEE
T ss_pred EEEECCCCCCEEEEEEECCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEE--ECCEEEEEE
T ss_conf 669135888489999985776588886999999880149689999999999998589989877364998--899889999
Q ss_pred ECCCCCCHHHHHHHCCCC-----------CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCEEE
Q ss_conf 614654299998212999-----------999999999999999999999998639997125889999776069997899
Q 001700 810 NYINAQSLAVYLQETDPR-----------KLPPLSIDERLRVAVDVARCLNYLHNERAIPHGNLKSTNILLEAPTMNAVL 878 (1025)
Q Consensus 810 e~~~~gsL~~~l~~~~~~-----------~~~~l~~~~~~~i~~~ia~aL~~LH~~~~ivHrdlkp~NILl~~~~~~~kl 878 (1025)
||+++|+|.+++...... ....++|.+++.|+.|||+||+|||+ .+|+||||||+|||++. ++.+||
T Consensus 109 Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~-~~iiHRDLK~~NILl~~-~~~~Ki 186 (308)
T 4gt4_A 109 SYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDFVHLVAQIAAGMEYLSS-HHVVHKDLATRNVLVYD-KLNVKI 186 (308)
T ss_dssp ECCSSCBHHHHHHTTCSSCCCC-----CCEECCCCHHHHHHHHHHHHHHHHHHHH-TTCCCSCCSGGGEEECG-GGCEEE
T ss_pred ECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH-CCCCCCCCCCCCEEECC-CCCEEE
T ss_conf 8189994999998627654333322111124689999999999999999999986-89977873623068879-997898
Q ss_pred ECCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHC-CCCCCCCCCCCCCCCCHHHHH
Q ss_conf 622352102568875-510357445447533346888999970158999999999991-998998433599975257999
Q 001700 879 TDYSLHRILTSAGTA-DQVLNAGALGYRPPEFASTSKPCPSLKSDVYAFGIILLELLT-GKSSGEIVCVDPGVVDLTDWV 956 (1025)
Q Consensus 879 ~Dfgla~~~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~s~~~DV~SlGvil~ellt-G~~P~~~~~~~~~~~~l~~~~ 956 (1025)
+|||+++........ ......||+.|+|||++.+.. ++.++|||||||++|||+| |+.||.... ..++.+.
T Consensus 187 ~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~--~s~ksDVwSfGvvl~El~t~g~~Pf~~~~----~~~~~~~- 259 (308)
T 4gt4_A 187 SDLGLFREVYAADYYKLLGNSLLPIRWMAPEAIMYGK--FSIDSDIWSYGVVLWEVFSYGLQPYCGYS----NQDVVEM- 259 (308)
T ss_dssp CCSCCBCGGGGGGCBCSSSSSCBCGGGCCHHHHHHCC--CCHHHHHHHHHHHHHHHHTTTCCTTTTCC----HHHHHHH-
T ss_pred CCCCCCEECCCCCCEEEECCCCCCCCCCCHHHHHCCC--CCCCCHHHHHHHHHHHHHHCCCCCCCCCC----HHHHHHH-
T ss_conf 8760202336777404734512577656989982799--99630001579999999968999999989----9999999-
Q ss_pred HHHHHHCCCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCC-CCCCCHHHHHHHHHHCC
Q ss_conf 99975216663102342289999996589999999998813999-99999899999996300
Q 001700 957 RLLALENRSGECFDRLIMDGHDMEQPPRILSDMLQVALRCILPA-SERPDMMSVFEELSTIV 1017 (1025)
Q Consensus 957 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~l~~~Cl~~~-~~RPs~~ev~~~L~~i~ 1017 (1025)
+..+...+.+..++.++.+++.+||+.+ ++||||.||++.|+++.
T Consensus 260 ----------------i~~~~~~~~p~~~~~~~~~li~~C~~~dP~~RPs~~ei~~~L~a~~ 305 (308)
T 4gt4_A 260 ----------------IRNRQVLPCPDDCPAWVYALMIECWNEFPSRRPRFKDIHSRLRAWG 305 (308)
T ss_dssp ----------------HHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTSC
T ss_pred ----------------HHCCCCCCCCCCCHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHCC
T ss_conf ----------------9819989996203699999999975879657929999999998531
Done!