Query 001701
Match_columns 1024
No_of_seqs 196 out of 211
Neff 5.5
Searched_HMMs 29240
Date Tue Mar 26 16:12:23 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001701.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_999-1003//hhsearch_pdb/001701hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4elj_A Retinoblastoma-associat 1.0 1 1 1484.1 55.0 642 23-912 3-655 (656)
2 4ell_A Retinoblastoma-associat 1.0 1 1 942.1 29.3 398 422-912 1-410 (411)
3 2r7g_A PP110, retinoblastoma-a 1.0 1 1 849.7 30.7 336 425-912 1-346 (347)
4 2qdj_A Retinoblastoma-associat 1.0 1 1 544.0 21.2 275 25-364 3-296 (304)
5 4bbr_M Transcription initiatio 1.0 1 1 50.5 8.9 72 751-824 126-197 (345)
6 3k7a_M Transcription initiatio 1.0 1 1 48.1 4.9 73 750-824 125-197 (345)
7 1c9b_A General transcription f 1.0 1 1 45.7 8.7 53 25-87 9-61 (207)
8 1ais_B TFB TFIIB, protein (tra 1.0 1 1 45.0 8.8 61 760-822 114-174 (200)
9 2aze_C Retinoblastoma-associat 1.0 1 1 41.5 2.4 37 943-984 1-38 (46)
10 2qdj_A Retinoblastoma-associat 1.0 1 1 33.7 6.8 45 557-606 63-107 (304)
No 1
>4elj_A Retinoblastoma-associated protein; cyclin fold, tumor suppressor protein, phosphorylation, cell; HET: TPO; 2.70A {Homo sapiens}
Probab=1.00 E-value=1 Score=1484.14 Aligned_cols=642 Identities=24% Similarity=0.446 Sum_probs=561.2
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 69999999974005999789999999999999987410135799991678999999999997721354578887776887
Q 001701 23 ATEARLTDLCKNGLSVDENTYKEIIKLFRETKHLLLANISAIGNGMPEEAERFWFAFVLYLVRRLSEKNGENLQQGSNDN 102 (1024)
Q Consensus 23 ~~~~rf~~lC~~~LnlD~~t~~~A~~~f~~~~~~~~~~~~~~~~~t~Eg~~~~W~ac~LY~a~r~~~~tv~~~~~~~~gn 102 (1024)
--+++|++||++ ||||++++++||++|++++ ++.+.+| ||+||+++||+||++|+||+ ++||
T Consensus 3 ~~~~~f~~lC~~-Ln~d~~~~~~Aw~~~~~~~----~~~~~l~-~tleg~~~~W~aC~ly~~~~------------~~gn 64 (656)
T 4elj_A 3 FEEPDFTALCQK-LKIPDHVRERAWLTWEKVS----SVDGVLG-GYIQKKKELWGICIFIAAVD------------LDEM 64 (656)
T ss_dssp CCCHHHHHHHHH-TTCCHHHHHHHHHHHHHHH----HHCSCC------CCHHHHHHHHHHHHHH------------TTCC
T ss_pred CCHHHHHHHHHH-HCCCHHHHHHHHHHHHHHH----HCCCCCC-CCCCCCHHHHHHHHHEEEEE------------CCCC
T ss_conf 407789999998-1999789999999999987----0045545-77542157854404224662------------4688
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 41288999740878889877667999862481114577118869999967421335788999999987401468888866
Q 001701 103 EFNLCHILRVMKLNIVDFFKELPQFLVKSGPILSNIYGADWENRLEAKELQANFVHLSILSKSYKRIYREFFLPSDANGD 182 (1024)
Q Consensus 103 ~vsLT~iLr~~~lsl~~Ff~km~~w~~~~~~~l~~l~~~~~~~rl~~keLe~nf~v~~vL~kky~~iF~~iF~~p~~~~~ 182 (1024)
|||||||||+|+||++|||+||+|| +| +++|+.+ +++||+||+|+++|||||+++|++||..|+++++
T Consensus 65 ~vsLt~lLr~~~lsl~~FF~kikk~-dm---------~~~~~~~--i~rLE~kF~v~~vlfkky~~if~~iF~~p~~~~~ 132 (656)
T 4elj_A 65 SFTFTELQKNIEISVHKFFNLLKEI-DT---------STKVDNA--MSRLLKKYDVLFALFSKLERTCELIYLTQPSSSI 132 (656)
T ss_dssp CSCHHHHHHHHTCCHHHHHHHHHHS-CC---------CHHHHHH--HHHHHHHHHHHHHHHHHHHHHHTTTBCCC-----
T ss_pred EEEHHHHHHHHCCCHHHHHHHHHHC-CC---------CHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 5449999988367799999885863-37---------0889999--9999876766789999899999998529986667
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 56644468988033787889999999964215674179986679999999985078532256667885221236875116
Q 001701 183 KQSAAASTSGYISDYHRFGWLLFLALRIHAFSRFKDLVTCTNGLVSILAILIIHVPVRFRNFNIHDSSRFVKKSNKGVDL 262 (1024)
Q Consensus 183 ~~~~~~~~~~~~~d~~~f~W~LFl~~K~~~~~~f~DLV~s~~LLlc~ldll~~n~p~~~~~~~~~~~~~~~k~~~~~~~i 262 (1024)
+ .+|+++++|+|||+|||++|++++++++|||+||||||||||++|+|||.+++|++++|.+ +++++|+
T Consensus 133 ---~---~~~~~~~~~~f~W~LFl~~K~~~~~~~~DLV~s~hLLlc~ldl~~~~~p~dlln~~~~~~~-----~~~~~~i 201 (656)
T 4elj_A 133 ---S---TEINSALVLKVSWITFLLAKGEVLQMEDDLVISFQLMLCVLDYFIKLSPPMLLKEPYKTAV-----IENDTRI 201 (656)
T ss_dssp ---------CCHHHHHHHHHHHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHHHSCGGGBCHHHHTTC-----C--CTHH
T ss_pred ---C---CCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCC-----CCCCCCH
T ss_conf ---7---8887999998899999998602443212799999999999999998598988088767799-----9887568
Q ss_pred HHHHHHHCCCCHHHHHHHHHH-HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 997542049999999999999-8999999740187666643344677878885100136899760567899999999997
Q 001701 263 IASLCSIYDTSEDDLRKIMEK-TNTLIADILKKKPCEASECKSENLENIDTDGLIYFENLMDDSSLSSSLNILEKDYDNA 341 (1024)
Q Consensus 263 l~~LC~~~~~~~~e~k~~~~~-~~~~I~~lf~k~~l~~~~~~~~~l~~~~~~~~~~f~gLl~~~~f~~nl~~Lnk~YE~~ 341 (1024)
+++||+.|+|+++|+|++++| |+++|.++ |+++|.|++ |.++|||+||+|
T Consensus 202 l~~LC~~~~~~~~E~k~i~~~~f~~~i~~l----------------------~l~~~~~~~-------n~k~Lnk~YEe~ 252 (656)
T 4elj_A 202 IEVLCKEHECNIDEVANVAFKNFIPFMNSL----------------------GLVTSNGLP-------EVENLSKRYEEI 252 (656)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHTHHHHHHTT----------------------GGGEETTEE-------CHHHHHHHHHHH
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHCCH----------------------HHHHCCCCC-------CHHHHHHHHHHH
T ss_conf 999865358869999999987406331501----------------------124208852-------178999999999
Q ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 50269986311235788644688878886433464321254589866678999999999999998888887666676046
Q 001701 342 TRNKGELDERVFINEDDSLLGSGSLSGGAVNITGAKRKFDSLASPVKTITSPLSPHRSSASHPNGIAGGATSKMVVTPVS 421 (1024)
Q Consensus 342 vl~~GdlDERiFL~~d~~~ig~~~~s~~~~~~~~~~~k~~~~~sp~k~~~~plt~~~sp~s~~~g~~~~~~~~~~~TPVS 421 (1024)
|+++|||||||||++|+++.+ +. .+..+ ...+|++. .| ..+.+..+|+||||
T Consensus 253 vl~~Gd~DERiFl~~d~~i~~-~~-----~~~~~------~~~tP~k~---------~~-------~~~~~~~p~~TPVs 304 (656)
T 4elj_A 253 YLKNKDLDARLFLDHDKTLQT-DS-----IDSFE------TQRTPRKS---------NL-------DEEVNVIPPHTPVR 304 (656)
T ss_dssp HHHHTCCCGGGGGGTCGGGCC-----------------------------------------------------CCCHHH
T ss_pred HCCCCCCCHHHHCCCCCCCCC-CH-----HHHHC------CCCCCCCC---------CC-------CCCCCCCCCCCCHH
T ss_conf 652677535564377532366-42-----33203------67898766---------87-------65566789998548
Q ss_pred HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 57869999999918999999189999985359892888999999999856467888964333677787743359999999
Q 001701 422 TAMTTAKWLRTVICPLPSKPSAELERFLKSCDKDVTTDVMRRAHIILEAIFPSSGLGERCVTGSLQGANLMDNIWAEQRR 501 (1024)
Q Consensus 422 ~Am~s~~wL~~~ls~l~~~PS~~L~~~~~sC~~d~~~~i~~Rv~~i~e~~f~~~~~~~~~~~~~~~~~~~~d~~~a~qR~ 501 (1024)
+||++++||+++++|++++||++|.+||++|++||+++|++||++|++.|..++.. . .|. ...| +|+||+
T Consensus 305 ~A~~si~~L~~~l~~~~~~PS~~L~~~f~~C~~dp~~~I~~rv~~l~~~F~~~~~~--~--~g~----~~~~--~a~~R~ 374 (656)
T 4elj_A 305 TVMNTIQQLMMILNSASDQPSENLISYFNNCTVNPKESILKRVKDIGYIFKEKFAK--A--VGQ----GCVE--IGSQRY 374 (656)
T ss_dssp HHHHHHHHHHHHTTTCCSSCCHHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHHHH--H--HCG----GGHH--HHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCC--C--CCC----CCCH--HHHHHH
T ss_conf 99989999999853788899989999999748886999999999999999987213--4--687----6406--999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCHHHHHHHHHHHHHHHHHHHCCCC---------CCCHHHHHHHCCCCCC
Q ss_conf 9999999999999999999630533258741004678999999899999540677---------6442478641189851
Q 001701 502 LEALKLYYRVLEAMCTAEAQVLHAKNLTSLLTNERFHRCMLACSAELVLATHKTV---------TMLFPAVLERTGITAF 572 (1024)
Q Consensus 502 ~~a~~LYYrvLE~Il~~E~~rl~~~~ls~LL~~e~FhrsLlACclEiVl~sy~~~---------~~~FPwILe~~~i~aF 572 (1024)
.+|++|||||||+||.+|++|++..|+|.||+|++||+||+|||+|||+|+|+.+ ++.|||||++|+|+||
T Consensus 375 ~la~~LYYkvLE~Il~~E~~rl~~~~ls~LL~~~~Fh~sLlACclEvVl~~y~~~~~~~~~~~~~~~FPwiL~~~~i~af 454 (656)
T 4elj_A 375 KLGVRLYYRVMESMLKSEEERLSIQNFSKLLNDNIFHMSLLACALEVVMATYSRSTSQNLDSGTDLSFPWILNVLNLKAF 454 (656)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCSCCHHHHHCHHHHHHHHHHHHHHHHHHHSCCCC----CCCSSSTTHHHHHTTCCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHCCCCHH
T ss_conf 99999999999999999987436115888850449999999999999999935542234565556677199886188677
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCCCCCCCCHHHHHHCCCC
Q ss_conf 57879899995118999989999999999998563216799105766620562246652026678999852354210346
Q 001701 573 DLSKVIESFIRHEESLPRELRRHLNSLEERLLESMVWEKGSSMYNSLTVARPVLSAEINRLGLLADPMPSLDAIATHINF 652 (1024)
Q Consensus 573 df~KVIE~fVR~e~~LpRelvkHLn~IEEqILEslAW~~~S~Lw~~L~~a~~~~~~ei~~~~~~~e~~p~~~~i~~~~~~ 652 (1024)
|||||||+|||||++|||+|+||||+|||||||||||++|||||+.|+.++++
T Consensus 455 df~KVIE~fvr~e~~L~r~lvkHL~~iEe~iLEslaW~~~S~L~~~l~~~~~~--------------------------- 507 (656)
T 4elj_A 455 DFYKVIESFIKAEGNLTREMIKHLERCEHRIMESLAWLSDSPLFDLIKQSKDR--------------------------- 507 (656)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTGGGSSSCTHHHHHHTTSCC---------------------------
T ss_pred HHHHHHHHHEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCC---------------------------
T ss_conf 78766655200367799999999999999999998704688689998833655---------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 78999976567766689999899899998766654100013555675200012567888999999766555799989999
Q 001701 653 SSGGLSPVHSLHKHETSPGQNGDIRSPKRPCTDYRSVLVERNNFTSPVKDRLLGLNNLKSKPLPPPLQSAFASPTRPNPG 732 (1024)
Q Consensus 653 ~~~~~pp~p~~~~~~~~~~~~~~~~sp~~~~~~~~s~~~~~~~~~sP~k~~l~~~~~~~~k~~p~~~~s~~~sp~~~~~~ 732 (1024)
.| +
T Consensus 508 -----------------~g--------------------------------------------~---------------- 510 (656)
T 4elj_A 508 -----------------EG--------------------------------------------P---------------- 510 (656)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -----------------CC--------------------------------------------C----------------
T ss_conf -----------------56--------------------------------------------7----------------
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCC
Q ss_conf 999864203599999999999999999999991999-5889999999999983101223466146998978887666256
Q 001701 733 GGGETCAETGINIFFCKINKLAAVRINAMVERLQLS-QQIRESVYCLFQQILNQRTSLFFNRHIDQIILCCFYGVAKISQ 811 (1024)
Q Consensus 733 ~g~~~~~~t~l~lFfrKvy~LAa~RL~~LC~rL~l~-~~l~~kIWt~fe~~L~~~t~Lm~dRHLDQiiLCaiY~i~Kv~k 811 (1024)
.+++++++||||||+||++||++||++|.++ ++++++|||+|||+|.|+|+||+|||||||||||||++|||++
T Consensus 511 -----~~s~sl~iffrKvy~LAa~Rl~~LC~~L~~~~~~i~~~IWt~fe~~l~~~t~L~~dRHLDQiilCsiY~icKv~~ 585 (656)
T 4elj_A 511 -----LKSTSLSLFYKKVYRLAYLRLNTLCERLLSEHPELEHIIWTLFQHTLQNEYELMRDRHLDQIMMCSMYGICKVKN 585 (656)
T ss_dssp ------CCSHHHHHHHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHCGGGSTTSCHHHHHHHHHHHHHHHTT
T ss_pred -----CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCC
T ss_conf -----666489999999999999999999998666735789999999999998628987443078999999999998415
Q ss_pred CCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 86279999998630889876201688853433335898643212310011130087457999984579876666654446
Q 001701 812 LNLTFREIIYNYRKQPQCKPQVFRSVFVDWASARQSGRSEQDHVDIITFYNKIFVPAVKPLLVELGPAGTAMKTNRVSEV 891 (1024)
Q Consensus 812 ~~~tFk~Ii~~Yr~QPqa~~~VyRsVli~~~~~~~~g~~~~e~gDII~FYN~VFvp~mK~f~l~~~~~~~~~~~~~~~~~ 891 (1024)
.+++|++||++||+||||+++|||+|+|+. +++||||+|||+||||+||+|+++++++
T Consensus 586 ~~ltFk~Ii~~Yr~qpq~~~~vyr~V~i~~----------g~~~DII~FYN~Vfvp~~K~f~l~~~~~------------ 643 (656)
T 4elj_A 586 IDLKFKIIVTAYKDLPHAVQETFKRVLIKE----------EEYDSIIVFYNSVFMQRLKTNILQYAST------------ 643 (656)
T ss_dssp CCCCHHHHHHHHHTSTTCCTHHHHSEEEET----------TEEECHHHHHHHTHHHHHTTTGGGC---------------
T ss_pred CCCCHHHHHHHHHHCCCCCCCEEEEEEECC----------CCCCCHHHHHHHHHHHHHHHHHHHHCCC------------
T ss_conf 776899999999847788876567888269----------9876089998887899899999984689------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCC
Q ss_conf 889999999999887799899
Q 001701 892 NHNNDGPCPGSPKVSVFPALP 912 (1024)
Q Consensus 892 ~~~~d~~~~~sP~lSp~P~~~ 912 (1024)
+.|+|||||.+|
T Consensus 644 ---------~~~~lsp~p~~~ 655 (656)
T 4elj_A 644 ---------RPPTLAPIPHIP 655 (656)
T ss_dssp ---------------------
T ss_pred ---------CCCCCCCCCCCC
T ss_conf ---------999899999999
No 2
>4ell_A Retinoblastoma-associated protein; cyclin fold, tumor suppressor, cell cycle; 1.98A {Homo sapiens}
Probab=1.00 E-value=1 Score=942.07 Aligned_cols=398 Identities=26% Similarity=0.507 Sum_probs=334.6
Q ss_pred HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 57869999999918999999189999985359892888999999999856467888964333677787743359999999
Q 001701 422 TAMTTAKWLRTVICPLPSKPSAELERFLKSCDKDVTTDVMRRAHIILEAIFPSSGLGERCVTGSLQGANLMDNIWAEQRR 501 (1024)
Q Consensus 422 ~Am~s~~wL~~~ls~l~~~PS~~L~~~~~sC~~d~~~~i~~Rv~~i~e~~f~~~~~~~~~~~~~~~~~~~~d~~~a~qR~ 501 (1024)
.||+|++|||++|+|++++||++|.+||++|++||+++|++||++|++.|...+.. . .+. ...| +++||+
T Consensus 1 ~~~~s~~~L~~~l~~~~~~PS~~L~~~f~sC~~dp~~~I~~rv~~l~~~F~~~~~~-~----~~~---~~~~--~a~~R~ 70 (411)
T 4ell_A 1 GEFNTIQQLMMILNSASDQPSENLISYFNNCTVNPKESILKRVKDIGYIFKEKFAK-A----VGQ---GCVE--IGSQRY 70 (411)
T ss_dssp ------CHHHHHHHHSCSSCCHHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHHHH-H----HCC---C--C--HHHHHH
T ss_pred CCCHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHC-C----CCC---CCHH--HHHHHH
T ss_conf 90248999999864899999899999998669986999999999999999987401-2----476---3306--999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCHHHHHHHHHHHHHHHHHHHCCC---------CCCCHHHHHHHCCCCCC
Q ss_conf 999999999999999999963053325874100467899999989999954067---------76442478641189851
Q 001701 502 LEALKLYYRVLEAMCTAEAQVLHAKNLTSLLTNERFHRCMLACSAELVLATHKT---------VTMLFPAVLERTGITAF 572 (1024)
Q Consensus 502 ~~a~~LYYrvLE~Il~~E~~rl~~~~ls~LL~~e~FhrsLlACclEiVl~sy~~---------~~~~FPwILe~~~i~aF 572 (1024)
.+|++|||++||+||.+|++|++..|++.||+||+||+||+|||+|||+|+|++ .++.|||||++|+|+||
T Consensus 71 ~la~~LYY~~LE~Il~~E~~rl~~~~~s~LL~~~~Fh~sLlACclEvVl~~y~~~~~~~~~~~~~~~FPwiL~~~~i~af 150 (411)
T 4ell_A 71 KLGVRLYYRVMESMLKSEEERLSIQNFSKLLNDNIFHMSLLACALEVVMATYSRSTSQNLDSGTDLSFPWILNVLNLKAF 150 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC------------CCTTHHHHHTTCCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHCCCCHH
T ss_conf 99999999999999999998525004888860689999999999999999944432234566667677299986499765
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCCCCCCCCHHHHHHCCCC
Q ss_conf 57879899995118999989999999999998563216799105766620562246652026678999852354210346
Q 001701 573 DLSKVIESFIRHEESLPRELRRHLNSLEERLLESMVWEKGSSMYNSLTVARPVLSAEINRLGLLADPMPSLDAIATHINF 652 (1024)
Q Consensus 573 df~KVIE~fVR~e~~LpRelvkHLn~IEEqILEslAW~~~S~Lw~~L~~a~~~~~~ei~~~~~~~e~~p~~~~i~~~~~~ 652 (1024)
|||||||+|||||++||||||||||+|||||||||||++|||||++|+.++ ++.|.+++++|+.. ..
T Consensus 151 df~KVIE~fvr~e~~L~r~lvkHL~~iEe~iLEslaW~~~S~Lw~~l~~~~-------~~~~~~~~~~~~~~-~~----- 217 (411)
T 4ell_A 151 DFYKVIESFIKAEGNLTREMIKHLERCEHRIMESFAWLSDSPLFDLIKQSK-------DREGPTDHLESACP-LN----- 217 (411)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTGGGSTTCHHHHHHHHC------------------------------
T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCC-------CCCCCCCCCCCCCC-CC-----
T ss_conf 665565775323677999999999999999988887167986899998503-------46786334688533-34-----
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCC
Q ss_conf 78999976567766689999899899998766654100013555675200012567888999999766555799--9899
Q 001701 653 SSGGLSPVHSLHKHETSPGQNGDIRSPKRPCTDYRSVLVERNNFTSPVKDRLLGLNNLKSKPLPPPLQSAFASP--TRPN 730 (1024)
Q Consensus 653 ~~~~~pp~p~~~~~~~~~~~~~~~~sp~~~~~~~~s~~~~~~~~~sP~k~~l~~~~~~~~k~~p~~~~s~~~sp--~~~~ 730 (1024)
.| .++. ..+ .+.|.||+|+. +++...++ ++++++| +.+.
T Consensus 218 -------~p-~~~~-------------~t~----------~~~~~SP~~~~-------~~~~~~~~-~~~~~~~~~~~~~ 258 (411)
T 4ell_A 218 -------LP-LQNN-------------HTA----------ADMYLEPVRAP-------KKKGSTTR-VNSTANAETQATS 258 (411)
T ss_dssp ---------------------------CCH----------HHHHHCCC--------------------------------
T ss_pred -------CC-CCCC-------------CCC----------HHCCCCCCCCC-------CCCCCCCC-CCCCCCCCCCCCC
T ss_conf -------56-6677-------------650----------11036887741-------00156786-5444676656788
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 999998642035999999999999999999999919995-8899999999999831012234661469989788876662
Q 001701 731 PGGGGETCAETGINIFFCKINKLAAVRINAMVERLQLSQ-QIRESVYCLFQQILNQRTSLFFNRHIDQIILCCFYGVAKI 809 (1024)
Q Consensus 731 ~~~g~~~~~~t~l~lFfrKvy~LAa~RL~~LC~rL~l~~-~l~~kIWt~fe~~L~~~t~Lm~dRHLDQiiLCaiY~i~Kv 809 (1024)
+..++++++++++++||||||+||++||++||++|++++ +++++|||||||+|+|+|+||+||||||||||||||||||
T Consensus 259 ~~~~~~~~~~~sl~lFfrKvy~LAa~Rl~~LC~~L~~~~~~l~~~IWt~fe~~l~~~teLm~dRHLDQiiLCsiY~i~Kv 338 (411)
T 4ell_A 259 AFQTQKPLKSTSLSLFYKKVYRLAYLRLNTLCERLLSEHPELEHIIWTLFQHTLQNEYELMRDRHLDQIMMCSMYGICKV 338 (411)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 87777776543799999999999999999999986788378899999999999985357650562999999999999861
Q ss_pred CCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 56862799999986308898762016888534333358986432123100111300874579999845798766666544
Q 001701 810 SQLNLTFREIIYNYRKQPQCKPQVFRSVFVDWASARQSGRSEQDHVDIITFYNKIFVPAVKPLLVELGPAGTAMKTNRVS 889 (1024)
Q Consensus 810 ~k~~~tFk~Ii~~Yr~QPqa~~~VyRsVli~~~~~~~~g~~~~e~gDII~FYN~VFvp~mK~f~l~~~~~~~~~~~~~~~ 889 (1024)
++++++|++||++||+||||+++|||+|+|+. +++||||+|||+||||+||+|+++|+++
T Consensus 339 ~~~~~tFk~Ii~~Yr~qPqa~~~vyr~Vli~~----------g~~gDII~FYN~Vfv~~mK~f~l~~~~~---------- 398 (411)
T 4ell_A 339 KNIDLKFKIIVTAYKDLPHAVQETFKRVLIKE----------EEYDSIIVFYNSVFMQRLKTNILQYAST---------- 398 (411)
T ss_dssp TTCCCCHHHHHHHHTTSTTCCTHHHHSEECSS----------SCEECHHHHHHHTHHHHHHHHHHGGGSS----------
T ss_pred CCCCCCHHHHHHHHHHCCCCCCCEEEEEEECC----------CCCCCHHHHHHHHHHHHHHHHHHHHCCC----------
T ss_conf 46777899999999857687775468888579----------9756099999999999999999985579----------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 46889999999999887799899
Q 001701 890 EVNHNNDGPCPGSPKVSVFPALP 912 (1024)
Q Consensus 890 ~~~~~~d~~~~~sP~lSp~P~~~ 912 (1024)
++|+|||+|.+|
T Consensus 399 -----------~~~~lsp~p~~~ 410 (411)
T 4ell_A 399 -----------RPPTLAPIPHIP 410 (411)
T ss_dssp -----------SCCCCCCCC---
T ss_pred -----------CCCCCCCCCCCC
T ss_conf -----------999999999999
No 3
>2r7g_A PP110, retinoblastoma-associated protein, P105-RB, RB; retinoblastoma protein, E2F displacement, transcription repressor; 1.67A {Homo sapiens} SCOP: a.74.1.3 a.74.1.3 PDB: 1n4m_A 3pom_A 1gh6_B 1gux_A 1o9k_A 1ad6_A 1gux_B 1o9k_B
Probab=1.00 E-value=1 Score=849.74 Aligned_cols=336 Identities=30% Similarity=0.595 Sum_probs=302.9
Q ss_pred HHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 69999999918999999189999985359892888999999999856467888964333677787743359999999999
Q 001701 425 TTAKWLRTVICPLPSKPSAELERFLKSCDKDVTTDVMRRAHIILEAIFPSSGLGERCVTGSLQGANLMDNIWAEQRRLEA 504 (1024)
Q Consensus 425 ~s~~wL~~~ls~l~~~PS~~L~~~~~sC~~d~~~~i~~Rv~~i~e~~f~~~~~~~~~~~~~~~~~~~~d~~~a~qR~~~a 504 (1024)
+|++|||++++|++++||++|.+||++|++||+++|++|+++|++.|...+. .. .|. . ..| ++++|+.+|
T Consensus 1 ~~~~~L~~~~~~~~~~Ps~~L~~~~~~C~~~p~~~i~~rv~~l~~~f~~~~~--~~--~~~-~---~~~--~~~~R~~~a 70 (347)
T 2r7g_A 1 NTIQQLMMILNSASDQPSENLISYFNNCTVNPKESILKRVKDIGYIFKEKFA--KA--VGQ-G---CVE--IGSQRYKLG 70 (347)
T ss_dssp CCHHHHHHHHHHSCSSCCHHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHHH--HH--HCG-G---GHH--HHHHHHHHH
T ss_pred CHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH--HC--CCC-C---CCH--HHHHHHHHH
T ss_conf 9689999986489999998999999976998699999999999999999876--31--376-5---425--999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHHHHCHHHHHHHHHHHHHHHHHHHCCC---------CCCCHHHHHHHCCCCCCHHH
Q ss_conf 999999999999999963053325874100467899999989999954067---------76442478641189851578
Q 001701 505 LKLYYRVLEAMCTAEAQVLHAKNLTSLLTNERFHRCMLACSAELVLATHKT---------VTMLFPAVLERTGITAFDLS 575 (1024)
Q Consensus 505 ~~LYYrvLE~Il~~E~~rl~~~~ls~LL~~e~FhrsLlACclEiVl~sy~~---------~~~~FPwILe~~~i~aFdf~ 575 (1024)
++|||++||+||.+|.+|++..|+++||++|+||+||+|||+|+|++||++ .++.|||||++|+|+|||||
T Consensus 71 ~~LYY~vLe~Il~~E~~r~~~~~~s~LL~~~~Fh~sLlACc~EiVl~ay~~~~~~~~~~~~~~~FP~il~~~~i~afdf~ 150 (347)
T 2r7g_A 71 VRLYYRVMESMLKSEEERLSIQNFSKLLNDNIFHMSLLACALEVVMATYSRSTSQNLDSGTDLSFPWILNVLNLKAFDFY 150 (347)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSCCCHHHHTCHHHHHHHHHHHHHHHHHHHHHHC------CCCCCTTHHHHHHTCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHH
T ss_conf 99999999999999998547331888842078999999999999999962421245665445777399986399767899
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCCCCCCCCHHHHHHCCCCCCC
Q ss_conf 79899995118999989999999999998563216799105766620562246652026678999852354210346789
Q 001701 576 KVIESFIRHEESLPRELRRHLNSLEERLLESMVWEKGSSMYNSLTVARPVLSAEINRLGLLADPMPSLDAIATHINFSSG 655 (1024)
Q Consensus 576 KVIE~fVR~e~~LpRelvkHLn~IEEqILEslAW~~~S~Lw~~L~~a~~~~~~ei~~~~~~~e~~p~~~~i~~~~~~~~~ 655 (1024)
||||+|||||++|||+|+||||+|||+|||+|||++|||||+.|..+++
T Consensus 151 KVIE~fVr~e~~LprelvkHL~~iEe~iLeslaW~~~S~L~~~l~~~~~------------------------------- 199 (347)
T 2r7g_A 151 KVIESFIKAEGNLTREMIKHLERCEHRIMESLAWLSDSPLFDLIKQSKD------------------------------- 199 (347)
T ss_dssp HHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTGGGSTTCTHHHHHHHHHC-------------------------------
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCC-------------------------------
T ss_conf 9989998656669899999999999999999973358779999986335-------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99976567766689999899899998766654100013555675200012567888999999766555799989999999
Q 001701 656 GLSPVHSLHKHETSPGQNGDIRSPKRPCTDYRSVLVERNNFTSPVKDRLLGLNNLKSKPLPPPLQSAFASPTRPNPGGGG 735 (1024)
Q Consensus 656 ~~pp~p~~~~~~~~~~~~~~~~sp~~~~~~~~s~~~~~~~~~sP~k~~l~~~~~~~~k~~p~~~~s~~~sp~~~~~~~g~ 735 (1024)
+ + |
T Consensus 200 ----------~---~---------------------------------------------------------------g- 202 (347)
T 2r7g_A 200 ----------R---E---------------------------------------------------------------G- 202 (347)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ----------C---C---------------------------------------------------------------C-
T ss_conf ----------6---7---------------------------------------------------------------8-
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCC
Q ss_conf 8642035999999999999999999999919995-889999999999983101223466146998978887666256862
Q 001701 736 ETCAETGINIFFCKINKLAAVRINAMVERLQLSQ-QIRESVYCLFQQILNQRTSLFFNRHIDQIILCCFYGVAKISQLNL 814 (1024)
Q Consensus 736 ~~~~~t~l~lFfrKvy~LAa~RL~~LC~rL~l~~-~l~~kIWt~fe~~L~~~t~Lm~dRHLDQiiLCaiY~i~Kv~k~~~ 814 (1024)
+++++++||||||+||++||++||++|++++ +++++|||+|||+|.|+|+||+|||||||||||||++|||++.++
T Consensus 203 ---~~~sl~~f~rKvy~La~~Rl~~LC~~L~~~~~~~~~~iWt~fe~~l~~~t~L~~dRHLDQiilCaiY~i~Kv~~~~~ 279 (347)
T 2r7g_A 203 ---KSTSLSLFYKKVYRLAYLRLNTLCERLLSEHPELEHIIWTLFQHTLQNEYELMRDRHLDQIMMCSMYGICKVKNIDL 279 (347)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHHTTCCC
T ss_pred ---CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCHHHHCCCCHHHHHHHHHHHHHHHCCCCC
T ss_conf ---65379999999999999999999998678755889999999999998575864587098999999999999627888
Q ss_pred CHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 79999998630889876201688853433335898643212310011130087457999984579876666654446889
Q 001701 815 TFREIIYNYRKQPQCKPQVFRSVFVDWASARQSGRSEQDHVDIITFYNKIFVPAVKPLLVELGPAGTAMKTNRVSEVNHN 894 (1024)
Q Consensus 815 tFk~Ii~~Yr~QPqa~~~VyRsVli~~~~~~~~g~~~~e~gDII~FYN~VFvp~mK~f~l~~~~~~~~~~~~~~~~~~~~ 894 (1024)
+|++||++||+||||+++|||+|+|+. +++||||+|||+||||+||+|++++.+.
T Consensus 280 tF~~Ii~~Yr~qpq~~~~vyr~V~i~~----------~~~gDII~FYN~vfvp~mK~f~~~~~~~--------------- 334 (347)
T 2r7g_A 280 KFKIIVTAYKDLPHAVQETFKRVLIKE----------EEYDSIIVFYNSVFMQRLKTNILQYAST--------------- 334 (347)
T ss_dssp CHHHHHHHHTTSTTCCTHHHHSEECSS----------SCEECHHHHHHHTHHHHHHHHHHHTTSS---------------
T ss_pred CHHHHHHHHHHCCCCCCHHEEEEECCC----------CCCCCHHHHHHHHHHHHHHHHHHHHCCC---------------
T ss_conf 999999999866465614214443168----------8858627862198899899999984789---------------
Q ss_pred CCCCCCCCCCCCCCCCCC
Q ss_conf 999999999887799899
Q 001701 895 NDGPCPGSPKVSVFPALP 912 (1024)
Q Consensus 895 ~d~~~~~sP~lSp~P~~~ 912 (1024)
++|+|||||++|
T Consensus 335 ------~~~~lSp~P~~p 346 (347)
T 2r7g_A 335 ------RPPTLSPIPHIP 346 (347)
T ss_dssp ------SCCCCCCCCCC-
T ss_pred ------CCCCCCCCCCCC
T ss_conf ------999999999999
No 4
>2qdj_A Retinoblastoma-associated protein; cyclin fold, cyclin wedge, antitumor protein; 2.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=543.98 Aligned_cols=275 Identities=17% Similarity=0.311 Sum_probs=240.6
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 99999997400599978999999999999998741013579999167899999999999772135457888777688741
Q 001701 25 EARLTDLCKNGLSVDENTYKEIIKLFRETKHLLLANISAIGNGMPEEAERFWFAFVLYLVRRLSEKNGENLQQGSNDNEF 104 (1024)
Q Consensus 25 ~~rf~~lC~~~LnlD~~t~~~A~~~f~~~~~~~~~~~~~~~~~t~Eg~~~~W~ac~LY~a~r~~~~tv~~~~~~~~gn~v 104 (1024)
++||+++|++ ||||+.++++||++|++++++ +.+|+++.||+++||+|| ||+||. .++||||
T Consensus 3 ~~rF~~lC~~-Lnld~~~~~~Aw~~~~~~~~~-----~~~~~~~~~~~~~~w~ac-LY~a~~-----------~~~~n~v 64 (304)
T 2qdj_A 3 EPDFTALCQK-LKIPDHVRERAWLTWEKVSSV-----DGVLGGYIQKKKELWGIC-IFIAAV-----------DLDEMSF 64 (304)
T ss_dssp CHHHHHHHHH-TTCCHHHHHHHHHHHHHHHC---------------CHHHHHHHH-HHHHHH-----------HHTCCCS
T ss_pred HHHHHHHHHH-CCCCHHHHHHHHHHHHHHHCC-----CCCCCCCCCCHHHHHHHH-HHHHHH-----------CCCCCCC
T ss_conf 6689999997-399989999999999998611-----455578853147998985-988763-----------0478837
Q ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 28899974087888987766799986248111457711886999996742133578899999998740146888886656
Q 001701 105 NLCHILRVMKLNIVDFFKELPQFLVKSGPILSNIYGADWENRLEAKELQANFVHLSILSKSYKRIYREFFLPSDANGDKQ 184 (1024)
Q Consensus 105 sLT~iLr~~~lsl~~Ff~km~~w~~~~~~~l~~l~~~~~~~rl~~keLe~nf~v~~vL~kky~~iF~~iF~~p~~~~~~~ 184 (1024)
|||||||+|+|||+|||+||+|| + +|++|+.+ +++||++|+|+++|||||+++|.+||+.|++++.
T Consensus 65 sLt~LLr~~~lsi~~Ff~k~~~~-d---------~~~~~~~~--i~~Le~~f~v~~~l~kky~~if~~iF~~~~~~~~-- 130 (304)
T 2qdj_A 65 TFTELQKNIEISVHKFFNLLKEI-D---------TSTKVDNA--MSRLLKKYDVLFALFSKLERTCELIYLTQPSSSI-- 130 (304)
T ss_dssp CHHHHHHHHTCCHHHHHHHHTTS-C---------CCHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHBCCBCCCSS--
T ss_pred CHHHHHHHCCCCHHHHHHHHHHC-C---------CCHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC--
T ss_conf 39999988697899999987874-7---------97999999--9999999999999999999999998069985557--
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCC-------CCCCC------
Q ss_conf 64446898803378788999999996421567417998667999999998507853225666-------78852------
Q 001701 185 SAAASTSGYISDYHRFGWLLFLALRIHAFSRFKDLVTCTNGLVSILAILIIHVPVRFRNFNI-------HDSSR------ 251 (1024)
Q Consensus 185 ~~~~~~~~~~~d~~~f~W~LFl~~K~~~~~~f~DLV~s~~LLlc~ldll~~n~p~~~~~~~~-------~~~~~------ 251 (1024)
+++|+++++|+|||+|||++|++++++++|||+||||||||||++|+|+|++++++.+ +|+++
T Consensus 131 ----~~~~~~~~l~~f~W~LFL~~K~~~~~~~~DLV~s~~LLlc~Ldliy~~~p~~ll~~~~~~~~~~~~g~~~~~~~~q 206 (304)
T 2qdj_A 131 ----STEINSALVLKVSWITFLLAKGEVLQMEDDLVISFQLMLCVLDYFIKLSPPMLLKEPYKTAVIPINGSPRTPRRGQ 206 (304)
T ss_dssp ----SCCBCSHHHHHHHHHHHHHHHHHCC---CCHHHHHHHHHHHHHHHHHTSCGGGBCTTTTGGGC-------------
T ss_pred ----CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCCCCCCCCCCC
T ss_conf ----8998799999999999999963077756629999899999999999968998847541013554568864322223
Q ss_pred -CCC----CCCCCCHHHHHHHHHCCCCHHHHHHHHHH-HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf -212----36875116997542049999999999999-899999974018766664334467787888510013689976
Q 001701 252 -FVK----KSNKGVDLIASLCSIYDTSEDDLRKIMEK-TNTLIADILKKKPCEASECKSENLENIDTDGLIYFENLMDDS 325 (1024)
Q Consensus 252 -~~k----~~~~~~~il~~LC~~~~~~~~e~k~~~~~-~~~~I~~lf~k~~l~~~~~~~~~l~~~~~~~~~~f~gLl~~~ 325 (1024)
|.+ .+++++|||++||+.|+++++|||+|++| |+++|..+ |+.+| +
T Consensus 207 ~~~~~~~~~~~~~~~il~~LC~~~~~~~~evk~~~~~~f~~~l~~l----------------------gL~~~------~ 258 (304)
T 2qdj_A 207 NRSARIAKQLENDTRIIEVLCKEHECNIDEVKNVYFKNFIPFMNSL----------------------GLVTS------N 258 (304)
T ss_dssp ------------CTHHHHHHHHHHTCCHHHHHHHHHHTHHHHTTCC----------------------------------
T ss_pred CCCCCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH----------------------CCCCC------C
T ss_conf 4344455567776449999861479989999999999889999881----------------------78533------8
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 056789999999999750269986311235788644688
Q 001701 326 SLSSSLNILEKDYDNATRNKGELDERVFINEDDSLLGSG 364 (1024)
Q Consensus 326 ~f~~nl~~Lnk~YE~~vl~~GdlDERiFL~~d~~~ig~~ 364 (1024)
+|+ |+++|||.||+||+++|||||||||++|++++|+.
T Consensus 259 ~l~-n~~~Lnk~Ye~~vl~~GdlDERiFl~~d~~l~~~~ 296 (304)
T 2qdj_A 259 GLP-EVENLSKRYEEIYLKNKDLDARLFLDHDKTLQTDS 296 (304)
T ss_dssp -CC-CHHHHHHHHHHHHHHHTSCCGGGGGGTCGGGCCCH
T ss_pred CCH-HHHHHHHHHHHHHCCCCCCCCCEECCCCCCCCCCC
T ss_conf 735-48999999999946257887301058864337886
No 5
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=1.00 E-value=1 Score=50.51 Aligned_cols=72 Identities=11% Similarity=0.193 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf 99999999999999199958899999999999831012234661469989788876662568627999999863
Q 001701 751 NKLAAVRINAMVERLQLSQQIRESVYCLFQQILNQRTSLFFNRHIDQIILCCFYGVAKISQLNLTFREIIYNYR 824 (1024)
Q Consensus 751 y~LAa~RL~~LC~rL~l~~~l~~kIWt~fe~~L~~~t~Lm~dRHLDQiiLCaiY~i~Kv~k~~~tFk~Ii~~Yr 824 (1024)
+.-|...|+.+|.+|+|+..+.+....+|..... -.++++|..+.++.+|+|+.||..+..++|+||....+
T Consensus 126 L~~a~~~I~~~~~~L~Lp~~v~d~A~~lyk~a~~--~~~~rGrs~e~vaAAclYiACR~~~~prtl~eI~~~~~ 197 (345)
T 4bbr_M 126 VQAAFAKITMLCDAAELPKIVKDCAKEAYKLCHD--EKTLKGKSMESIMAASILIGCRRAEVARTFKEIQSLIH 197 (345)
T ss_dssp TTHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTT--CTTTTTCCHHHHHHHHHHHHHHHTCCBCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH--CCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHC
T ss_conf 9999999999999849987899999999999986--68756887999999999999984389863999998819
No 6
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=48.10 Aligned_cols=73 Identities=11% Similarity=0.187 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf 999999999999999199958899999999999831012234661469989788876662568627999999863
Q 001701 750 INKLAAVRINAMVERLQLSQQIRESVYCLFQQILNQRTSLFFNRHIDQIILCCFYGVAKISQLNLTFREIIYNYR 824 (1024)
Q Consensus 750 vy~LAa~RL~~LC~rL~l~~~l~~kIWt~fe~~L~~~t~Lm~dRHLDQiiLCaiY~i~Kv~k~~~tFk~Ii~~Yr 824 (1024)
.+.-|...|+.+|.+|+|+..+.+....+|...+.+ .++++|-++.++.+|+|+.||..+...+|+||....+
T Consensus 125 ~l~~a~~~I~~~~~~L~Lp~~v~d~A~~lyk~~~~~--~~~kgr~~~~vaaAclyiAcR~e~~prtl~ei~~~~~ 197 (345)
T 3k7a_M 125 EVQAAFAKITMLCDAAELPKIVKDCAKEAYKLCHDE--KTLKGKSMESIMAASILIGCRRAEVARTFKEIQSLIH 197 (345)
T ss_dssp THHHHHHHHHHHHHHTTCCHHHHTHHHHHHHHHSSS--CSSCCCCSHHHHTTTTTTTSBTTBSSCCHHHHHHSSS
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHC--CCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHC
T ss_conf 999999999999998199899999999999999855--7656886889999999999997479855999999978
No 7
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=1.00 E-value=1 Score=45.67 Aligned_cols=53 Identities=15% Similarity=0.222 Sum_probs=23.9
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHC
Q ss_conf 999999974005999789999999999999987410135799991678999999999997721
Q 001701 25 EARLTDLCKNGLSVDENTYKEIIKLFRETKHLLLANISAIGNGMPEEAERFWFAFVLYLVRRL 87 (1024)
Q Consensus 25 ~~rf~~lC~~~LnlD~~t~~~A~~~f~~~~~~~~~~~~~~~~~t~Eg~~~~W~ac~LY~a~r~ 87 (1024)
.....++|.. |+|-+.+.+.|...|+..... +. + .......-.|.+||.|||.
T Consensus 9 ~~~I~~~~~~-L~L~~~v~~~A~~~~~r~~~~---~~--~----~~~~~~~v~aaclylAcK~ 61 (207)
T 1c9b_A 9 FKEITTMADR-INLPRNIVDRTNNLFKQVYEQ---KS--L----KGRANDAIASACLYIACRQ 61 (207)
T ss_dssp HHHHHHHHHH-TTCCHHHHHHHHHHHHHHHHH---TC--S----TTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHC---CC--C----CCCCHHHHHHHHHHHHHHH
T ss_conf 9999999987-699879999999999999856---87--5----7888999999999999993
No 8
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=1.00 E-value=1 Score=45.03 Aligned_cols=61 Identities=15% Similarity=0.222 Sum_probs=36.6
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 999991999588999999999998310122346614699897888766625686279999998
Q 001701 760 AMVERLQLSQQIRESVYCLFQQILNQRTSLFFNRHIDQIILCCFYGVAKISQLNLTFREIIYN 822 (1024)
Q Consensus 760 ~LC~rL~l~~~l~~kIWt~fe~~L~~~t~Lm~dRHLDQiiLCaiY~i~Kv~k~~~tFk~Ii~~ 822 (1024)
.+|.+|+++.++.+..|.+++.+.. ++++.+|.-..|.-.|||..|+..+...+.++|-..
T Consensus 114 r~~~~L~l~~~v~~~A~~i~~~~~~--~~~~~gr~P~~iAaAaly~A~~~~~~~~t~~ei~~~ 174 (200)
T 1ais_B 114 KFADELGLSEKVRRRAIEILDEAYK--RGLTSGKSPAGLVAAALYIASLLEGEKRTQREVAEV 174 (200)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHHH--TTCCTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHHH--CCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf 9999869988999999999999887--586469989999999999999996899799999989
No 9
>2aze_C Retinoblastoma-associated protein; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: j.119.1.1
Probab=1.00 E-value=1 Score=41.48 Aligned_cols=37 Identities=22% Similarity=0.315 Sum_probs=29.1
Q ss_pred CCEEEEEECCCCCCCCCCCCCHHHHHHHHHC-CCCCCCCEECC
Q ss_conf 8558999555446679987037999998603-98754310037
Q 001701 943 SKSYYACVGESTHAYQSPSKDLTDINHRLNS-NRRVRGTLNFD 984 (1024)
Q Consensus 943 s~~~y~~~Ges~~~~~SPskdL~~IN~~i~~-~~~~~~~l~~~ 984 (1024)
+++| ..||||++ -+.++|.||+|+|+ .+..||.+.-.
T Consensus 1 sr~L-vSiGEsFg----~~~rFQKINqMvnss~r~~KR~~d~~ 38 (46)
T 2aze_C 1 SRIL-VSIGESFG----TSEKFQKINQMVCNSDRVLKRSAEGS 38 (46)
T ss_dssp CEEE-EESSCTTT----HHHHHHHHHHHHHCCTTCCCCCSTTC
T ss_pred CCEE-EEHHHHHC----CHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 9477-64333307----55889999999841047666412578
No 10
>2qdj_A Retinoblastoma-associated protein; cyclin fold, cyclin wedge, antitumor protein; 2.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=33.73 Aligned_cols=45 Identities=7% Similarity=0.175 Sum_probs=37.8
Q ss_pred CCCHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 64424786411898515787989999511899998999999999999856
Q 001701 557 TMLFPAVLERTGITAFDLSKVIESFIRHEESLPRELRRHLNSLEERLLES 606 (1024)
Q Consensus 557 ~~~FPwILe~~~i~aFdf~KVIE~fVR~e~~LpRelvkHLn~IEEqILEs 606 (1024)
..++--+|..++|.-.+|++-|.- .+ +|.++.+++..+|...-=+
T Consensus 63 ~vsLt~LLr~~~lsi~~Ff~k~~~---~d--~~~~~~~~i~~Le~~f~v~ 107 (304)
T 2qdj_A 63 SFTFTELQKNIEISVHKFFNLLKE---ID--TSTKVDNAMSRLLKKYDVL 107 (304)
T ss_dssp CSCHHHHHHHHTCCHHHHHHHHTT---SC--CCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHCCCCHHHHHHHHHH---CC--CCHHHHHHHHHHHHHHHHH
T ss_conf 373999998869789999998787---47--9799999999999999999
Done!