Query 001702
Match_columns 1024
No_of_seqs 148 out of 275
Neff 3.5
Searched_HMMs 46136
Date Fri Mar 29 07:16:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001702.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001702hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2955 Uncharacterized conser 100.0 4E-186 9E-191 1559.8 36.6 852 1-1003 1-865 (1069)
2 COG5043 MRS6 Vacuolar protein 100.0 7.8E-40 1.7E-44 393.0 18.5 275 1-301 2-307 (2552)
3 KOG1809 Vacuolar protein sorti 100.0 8.1E-33 1.8E-37 349.3 19.1 272 1-301 2-302 (1827)
4 PF12624 Chorein_N: N-terminal 99.8 1E-19 2.2E-24 171.8 9.2 92 1-97 1-94 (118)
5 PF10351 Apt1: Golgi-body loca 33.0 1.6E+02 0.0035 34.7 8.4 127 318-473 168-296 (457)
6 PF05236 TAF4: Transcription i 27.4 20 0.00044 39.2 0.0 17 922-938 239-255 (264)
7 KOG4019 Calcineurin-mediated s 14.8 89 0.0019 33.8 1.5 68 334-407 41-109 (193)
8 PF08248 Tryp_FSAP: Tryptophyl 14.4 72 0.0016 20.7 0.4 8 406-413 4-12 (12)
9 PF12791 RsgI_N: Anti-sigma fa 12.3 1.3E+02 0.0029 25.5 1.6 25 609-635 7-31 (56)
10 COG0157 NadC Nicotinate-nucleo 11.7 60 0.0013 36.9 -0.9 13 841-859 145-157 (280)
No 1
>KOG2955 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=4.2e-186 Score=1559.81 Aligned_cols=852 Identities=52% Similarity=0.810 Sum_probs=800.8
Q ss_pred ChhHHHHHHHHHHHHHhcCCCccCcce---ecCeEEeeccccchhhhhhhcCCCCeeEEeEEEeeeEEEEcCcccccccc
Q 001702 1 MESIIARALEYTFKYWLKSFSRDQFKL---QGRTAQLSNLDINGDALHASMGLPPALHVTTAKLGKLEIILPSSVSNVQI 77 (1024)
Q Consensus 1 MESLVa~lLnryLgkYVKNLdpDQLnL---sGGdVeL~NLeLKedALde~L~LP~~L~V~~G~~GkLtLkIP~SWTNLKs 77 (1024)
|||||+++|.++|++|+|||+||||+| +| +++|+|||||+|||++.|+||+||.|++++||++.|.|| |||||+
T Consensus 1 M~sIIk~ql~khLs~ftKnltpdqi~L~~lKG-~~qL~nleineevL~~~L~LP~wL~I~~afc~k~~I~lP--wtklkT 77 (1069)
T KOG2955|consen 1 MESIIKRQLEKHLSYFTKNLTPDQIKLQGLKG-TAQLSNLEINEEVLHASLGLPPWLSITTAFCGKLEIMLP--WTKLKT 77 (1069)
T ss_pred CchHHHHHHHHHHHHHHhcCChhhEeeeeccc-cceecceecCHHHHHHhhcCCchheeeeeeecceEEecc--chhccc
Confidence 999999999999999999999999999 45 999999999999999999999999999999999999999 999999
Q ss_pred ccEEEEeccEEEEeecCCCccccccCCCCCCCCCCCCCCCCchHHHhhcCeEEEEEEEEEEEEeCCCCccCCCCCCCCcE
Q 001702 78 EPIVLQVDRLDLVLEENPDKDACNYASSTPTPTGSSKGSGYGFADKIADGMTLQVNTVNLLLVTRGGAQRDGGASWTPPM 157 (1024)
Q Consensus 78 ePV~I~ID~IyLvlep~~~~e~~r~~~~ss~~~ss~~~~~YGFitKIIDNLQV~InnIHIRYED~~~~~t~g~~~~~PFs 157 (1024)
+||+|.||+|.++++++.+.+. +++.+++.....+++|||++||++||.++|+.|.|+++..+ |+
T Consensus 78 ~PI~v~iDkl~l~le~~~e~~~---~~gpsp~~tas~~S~YGFa~KI~egmSl~V~sV~I~~~t~~------------f~ 142 (1069)
T KOG2955|consen 78 EPIVVQIDKLDLVLEENPEADV---TKGPSPSPTASAKSNYGFADKIAEGMSLQVKSVNILLETGG------------FA 142 (1069)
T ss_pred cceEEEeeeeeEEeecCccccC---CCCCCCCCCcccccccchHHHHhcCceEEEEEEEEEeecCc------------cc
Confidence 9999999999998887766544 33344443333556799999999999999999999999875 67
Q ss_pred EEEEEeeeEEEecCCCceeeccccccccccCCceEEEEEEEEecceeeEecCCCcccccccccccccCCCCCCCCCCcee
Q 001702 158 ASITIRNLVLCTTNENWQVVNLKEARDFSLNKKFIYVFKKLEWETLSVDLLPHPDMFADGSIARSNEGASHRDEDGAKRA 237 (1024)
Q Consensus 158 aGITLseLSaqSTDenWqpsdL~~tR~~s~~k~~ilIFKlL~wqsLSIYl~p~~dmf~d~~~~~sq~~iss~de~~P~Ry 237 (1024)
++++|++|+++|||+.|+.+||++||+++++++.+++||+++|+.|+|++++++.| ...... ..+|.|+
T Consensus 143 aSf~L~~L~lyS~n~~W~~vdLR~tRi~~t~tg~il~FK~l~W~~lrIea~a~~s~-~e~~~~----------~~ap~rL 211 (1069)
T KOG2955|consen 143 ASFTLRNLVLYSTNESWKVVDLRETRIFSTNTGFILLFKKLEWEALRIEALAHPSM-TEANLA----------RSAPARL 211 (1069)
T ss_pred eeEEEeeeEEEecCCCceeeeeeeeeeccCCCceEEEeeccceeeeeeeccCCCch-hhHHHh----------hcCceee
Confidence 89999999999999999999999999999999999999999999999999888876 222211 1378899
Q ss_pred ecCcceeeeeeeeEEEEEEcccCCCCCccceeeeeeccccccccCHHHHHHHHHHHHHHHHHhccCCCCccccccchhhc
Q 001702 238 FFGGERFIEGISAQAYITVQRTELNSPLGLEVQLHVTEAVCPALSEPGLRALLRFLSGLYVCLNRDDVDLTTQQLSTEAA 317 (1024)
Q Consensus 238 If~~qyILkPISG~ARLtlNR~e~Dsp~~~kVqLlI~DEI~~~LSd~QYrdlL~fl~SL~r~~~R~~~~~~~qq~~~~a~ 317 (1024)
|++. |.+|||++|+..|+++...++++|+|+++|+||++|+|++++|+++++.|++|+++++|+||
T Consensus 212 it~~--------gkiRItlkr~~~d~~vi~~~~~~IlddvlwvlT~pqLra~l~fat~m~~~l~~s~~~~ks~~------ 277 (1069)
T KOG2955|consen 212 ITED--------GKIRITLKRTALDSPVILEVQLHILDDVLWVLTEPQLRALLRFATGMYLCLNRSDVDPKSQQ------ 277 (1069)
T ss_pred eccC--------CeEEEEEeeeccCCchhhHhHHhhhHhHHHhcccHHHHHHHHHHHHHHHHHhhhccCccCcC------
Confidence 8885 99999999999999987778888999999999999999999999999999999999999999
Q ss_pred cCceeEEEeeeEEEeeechhHHHHHHhhhcccceeeeccccccccccceeeeeeeeeccCCCCCceeeccccccccccCC
Q 001702 318 GRSLVSIVVDHIFLCIKDAEFQLELLMQSLFFSRATVSDGETASNLTKITVAGLFLRDTFSRPPSTLVQPSMQAVSEDLV 397 (1024)
Q Consensus 318 g~~~v~~~vdhifl~ikd~~f~~ell~~~~~~~ra~~~~~~~~~~l~~i~igglflrd~f~~ppc~lvqpsm~~~~~~~~ 397 (1024)
|+|+++++.+.++.|++||+|+||.||+-||.+.||+|.+.... +
T Consensus 278 ----------------------------------~~vs~t~san~~~~~~~~g~~a~d~~s~i~~a~n~f~~k~tS~h-L 322 (1069)
T KOG2955|consen 278 ----------------------------------ACVSDTESANYLTKILIGGLFARDAFSRIPCALNQFSMKATSEH-L 322 (1069)
T ss_pred ----------------------------------ceeeccccccccceeeecccccchhhhhchhhhcccchhhhhhc-c
Confidence 99999999999999999999999999999999999999976555 9
Q ss_pred CcchhhhccCCccccCCcccceeecCcceEEEeecccccCCCCCCccccceeeccceEEEecccchhhhhhhccCceeec
Q 001702 398 LIPDFAKDFCPVICPLGDQQWQINKGVPLICLHTLQVKPSPAPPSFASRTVISCQPLMIHLQEESCLRISSFLADGILVN 477 (1024)
Q Consensus 398 ~vp~fa~~~~p~i~p~~~~~~~~~~~~pl~cl~~~q~~psp~pp~~as~tvi~cqpl~i~lqe~sclrissfladgiv~~ 477 (1024)
+||+|+.+|||-|||+++..|+..-+.|.+-||++||+|+|-||+||+.||++|+|+|.|+|||.|+|+++|+|+|||||
T Consensus 323 ~I~~~dlh~Cddih~~~~~p~~~~i~~gamql~~~Qv~id~yP~h~a~~t~~~wm~~s~~~~~~a~~rn~l~~~f~~~v~ 402 (1069)
T KOG2955|consen 323 AIPDFDLHFCDDIHPLDSGPWQIVIDVGAMQLHSLQVKIDPYPPHFASKTVIQWMPLSVHLQEEACLRNSLFLAFGIVVN 402 (1069)
T ss_pred ccccchhhccccccccccCCCceEeccceeEEEEEEeecCcCChhhcccchhheeehhhcchHHHHHHHHHHHhhccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccCCCccceEEEEeeceeeeeecCccccchhhhccCccccCcccceeEEeeceeeccCccccceecccCCCCceeec
Q 001702 478 HGAVLPDSSVNSLAFYLEDLDITVPLDMNKLDNHARQRNLTAHSSFAGARLHIKKLFFSESPSLKLRLLHLEKDPACFCL 557 (1024)
Q Consensus 478 ~~~~lpd~s~~s~~f~lk~~d~tvp~d~~~~~~~~~~~~~~~~~~f~garlhie~l~~~~sp~l~~rll~l~~dpacf~~ 557 (1024)
||+++||-++||+.|++|++||.+|+++..+...+...+.+.+.+|.|||+||||+.|++||.++.|++|+|+|||||++
T Consensus 403 p~~~~~~~~t~s~l~~~~~~~l~~~~vv~rl~D~~I~~vss~~~~~~~~~~~ie~~~~~~slp~~~~~v~lEf~~~y~p~ 482 (1069)
T KOG2955|consen 403 PGDVLPDNSTNSLLFTLKELDLSVPLVVSRLQDSAIEEVSSVKKSFVGARLHIENLSFAESLPLKVRLVNLEFDPAYFPL 482 (1069)
T ss_pred CccccCCCccchhHhhhhhhhhcchhhhhhhhhhhhhhhhhhhhhhhhHHHHhhhhhhhccCcccceEEEEecccccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCccccccccccccceEEEEEeecCCCCcccC---CCCceeEeecccceEEEEEEecCCCcceecCCCCcEEEEee
Q 001702 558 WEDQPIDASQRKWTAGASHLSLSLETCTSITGSQNS---NSGLWKCVELKDACIEVAMVSADGKPLTVVPPPGGVVRIGV 634 (1024)
Q Consensus 558 w~~qpvdasq~kw~~~as~~~lslet~~~~~~~~~~---~~~lw~cvel~d~~~e~am~t~dg~pl~~vpppggivr~gv 634 (1024)
|+||||++||++|+++|+|+|+..+|..-.+..|.+ +.|+|.|+|-+|..+|+|||.|||.||..||||||+||+|+
T Consensus 483 ~~~~PIp~s~~y~qlga~~fS~derT~~w~~q~~~~l~~~m~~~~~~~gn~vs~e~~dV~~dg~~l~~V~P~~v~~~~~~ 562 (1069)
T KOG2955|consen 483 WPGQPIPASQKYWQLGASHFSLDERTSPWSTQLQSPLGPEMGLWNCVEGNDVSIEVADVSADGKPLITVPPPGVIVRIGV 562 (1069)
T ss_pred CCCCcCCchhhheecCceEEEeecccchhhhhhhcccchhhchheeccCCccchheeeecCCCeeEEEecCccceeeccc
Confidence 999999999999999999999999999999999877 99999999999999999999999999999999999999999
Q ss_pred eeeccccccceeehhhHHHHhhhhchhhhhhhhhcCcccccccCCccccccccccCCCcceEEEeeccceeeeeccccCC
Q 001702 635 ACQQYLSNTSVEQLFFVLDIYTYFGRVSEKIVRVGKNKSAMKSGNESLGVKLMENAPNDTAVSLAVKDLQLRFLEPSSMN 714 (1024)
Q Consensus 635 ~~~q~~sntsveql~fvl~ly~y~g~v~e~i~~~~~~~~~~~~~~~s~~~~l~~~~p~dtav~l~~~~l~~~fles~~~~ 714 (1024)
+|++|.+-+++||+|||+|+|+|||+++|+|+.+++.+|. +.-+.++++.++||+||||.|..|+||.+||+++-+.
T Consensus 563 ~c~l~~~f~df~~~~f~~~~yS~f~kss~~i~~~~~~~r~---~~~s~tt~~he~vk~~~~~~Lnk~~l~t~~~s~~wi~ 639 (1069)
T KOG2955|consen 563 ACELYISFADFEQLFFVLDLYSYFGKSSEKISIVKESKRQ---NTVSLTTGLHEKVKSDTAVKLNKKDLQTKFLSSSWIS 639 (1069)
T ss_pred ccccccchhhhhHHHHHHHHHhhccccccceeeechhhhh---hhhhcccchhhhccccchhhhhhhhhhhhhcccceee
Confidence 9999999999999999999999999999999999999999 8889999999999999999999999999999999999
Q ss_pred cCCCceeEEecCceeEEEeccccceeEEEeeeeeeeEEEEeeeeCCCCccccCCCcCCCCCCC-CccCCCCCCcceEEEE
Q 001702 715 IEGMPLVQFVGEDMFIKVTHRTLGGAVAVSSTILWESVEVDCVDTEENLPHENGILLPPSESC-PQDIGNGYPQLRAVFW 793 (1024)
Q Consensus 715 ~eg~plvqf~g~d~~~~~thrtlgga~~vss~l~w~~v~v~cv~~e~~~~~e~~~~~~~~~~~-~~~~~~g~p~lr~vfw 793 (1024)
++|||++|+.+.++..++||||++||++||++++||.++++||++..++.|||.+ ++ ..+..+|.-.+|.+||
T Consensus 640 ~~~mp~~kg~p~~~~vsf~~~~~i~~~~~~~ni~~Ep~e~~~V~~d~~q~~~~s~------~Gdk~~k~l~~~~l~~~~~ 713 (1069)
T KOG2955|consen 640 TQDMPLVKGLPKDLSVSFTHRTLIGAIAVSSNIYWEPIEVDCVDTDVEQEHENSW------NGDKLVKCLGSTPLRRVFW 713 (1069)
T ss_pred ccCCccccCcccceeeeecceEEeccccchhheeecccccceEecchhhhhhccc------cchhHHhhcccCccceeee
Confidence 9999999999999999999999999999999999999999999999999999988 34 5677789999999999
Q ss_pred EecCCcccccCCcCCCCeeeeeeeEEeeCcCCCccccceeeEEEEeeEEecCchhhHHHHHhHhcccCCCCCCCcchhhh
Q 001702 794 VHKKGKHRLNDSAYAMPFLDMSMVHVIPLSEGDRECHSLSLSACISGVRLGGGMNYAEALLHRFGILGPDGGPGEGLSKG 873 (1024)
Q Consensus 794 v~~~~~~~~~~~~~~~pfldi~~~~vip~~~~d~e~hsl~v~a~vsgvrlgggm~y~e~llhrfgi~gpdggpg~gl~k~ 873 (1024)
+.|+++....+...+ ||+||+++||||+.|.|+||||.+++|---
T Consensus 714 ~tNg~~~~~S~dtl~-~f~~is~~~vi~l~e~~~~~~S~~i~~y~~---------------------------------- 758 (1069)
T KOG2955|consen 714 VTNGRHDEHSGDTLT-PFLDISITHVIPLSEKDMECHSVSIVAYGT---------------------------------- 758 (1069)
T ss_pred ecCCCCCCcccccee-ecccceeEEEeehhhcccccceeeehhcCC----------------------------------
Confidence 999988887777654 999999999999999999999999876311
Q ss_pred hcccCCCccccccccCCCcccccCCCCcccCCCCCcccCCCCCceeeEEEeechhhhccChhhhhcccccCCccccccce
Q 001702 874 IEHLSEGPLSKLFKASPLSVEDVGEGRNSLDGKDGLVHLGLPDDVDICVELKDWLFALEGAQEMEERCCLSSQEVGREER 953 (1024)
Q Consensus 874 l~~ls~gpl~~lfk~s~~~~~d~~~~~~~~~~~~~~~~l~~pd~~dv~i~l~dwlfaleg~~~~~~~~~~~~~~~~re~~ 953 (1024)
....+-+|++||+.|||+||.|+||||+|||||.+.++.| -.++|++|||+|
T Consensus 759 ---------------------------~~~~~l~g~l~l~~~~~i~v~v~lr~~~~al~~~~~~~~~-~l~~e~i~~~~~ 810 (1069)
T KOG2955|consen 759 ---------------------------PGNWNLDGFLHLGRPDDIDVSVELRDWLFALEGREGVGTR-ILNNEDIGREER 810 (1069)
T ss_pred ---------------------------cchhccccceeecCCcceeeeEeehhhHHHhhcCcccccc-cccccccCcccc
Confidence 0123335899999999999999999999999999999988 228899999999
Q ss_pred eeeeeeceEEEeeccCCCC------CCCCCcccCCceeEEeeccccccccCCCcce
Q 001702 954 SWHTTFQSVRAKAKSIPRQ------GKPYGTQRHPVELVTCGWPADLEASGPKGFT 1003 (1024)
Q Consensus 954 ~wh~tf~~l~~~~~~~~~~------~~~~~~~~~p~~~~t~~~~eglq~~kp~~~~ 1003 (1024)
|||+||+..+|.||++|+. ++++..|+||++.+.|.+ ||||..||.-|-
T Consensus 811 ~~~~~~~~~~~~ak~~~~~~d~n~~~~~~~~h~~~~~s~~v~~-~~l~~~~p~~~k 865 (1069)
T KOG2955|consen 811 CWHTNFRTFRVIAKSTPKNVDSNGTENQCDAHKYPVDSIIVSV-EGLQTVKPQMQK 865 (1069)
T ss_pred ccccccccceEeecccccccccccchhhhhcccCCCceeEEEc-ccCcccChHhhc
Confidence 9999999999999999995 788889999999999999 999999998764
No 2
>COG5043 MRS6 Vacuolar protein sorting-associated protein [Intracellular trafficking and secretion]
Probab=100.00 E-value=7.8e-40 Score=393.04 Aligned_cols=275 Identities=18% Similarity=0.274 Sum_probs=217.8
Q ss_pred ChhHHHHHHHHHHHHHhcCCCccCcce--ecCeEEeeccccchhhhhhhcCCCCeeEEeEEEeeeEEEEcCccccccccc
Q 001702 1 MESIIARALEYTFKYWLKSFSRDQFKL--QGRTAQLSNLDINGDALHASMGLPPALHVTTAKLGKLEIILPSSVSNVQIE 78 (1024)
Q Consensus 1 MESLVa~lLnryLgkYVKNLdpDQLnL--sGGdVeL~NLeLKedALde~L~LP~~L~V~~G~~GkLtLkIP~SWTNLKse 78 (1024)
+|+|+|++|||+||.||||||+.||++ |||+|.|+||+||++||+ .|+|| ++|++|.||.|+|+|| |++||++
T Consensus 2 LegLlanlLNRlLGsYVENfD~~QLnvgvw~GdVsl~NLriK~sald-kL~lp--i~V~sgligtLtl~iP--WsSLknK 76 (2552)
T COG5043 2 LEGLLANLLNRLLGSYVENFDTKQLNVGVWGGDVSLHNLRIKPSALD-KLGLP--IEVTSGLIGTLTLEIP--WSSLKNK 76 (2552)
T ss_pred hhHHHHHHHHHHHHHHHhhcCccceeEEEecceeEEEeeeecHHHHh-hcCCC--eEEeecceeeEEEEee--hHHhcCC
Confidence 699999999999999999999999998 999999999999999999 59999 9999999999999999 9999999
Q ss_pred cEEEEeccEEEEeecCCCcccc-----cc---------------CC-CCCCCCCCCCCCCCch----HHHhhcCeEEEEE
Q 001702 79 PIVLQVDRLDLVLEENPDKDAC-----NY---------------AS-STPTPTGSSKGSGYGF----ADKIADGMTLQVN 133 (1024)
Q Consensus 79 PV~I~ID~IyLvlep~~~~e~~-----r~---------------~~-~ss~~~ss~~~~~YGF----itKIIDNLQV~In 133 (1024)
||+|.|++||+.+.+....... ++ .+ ...+..++...++.+| ++|++||+||.|+
T Consensus 77 PVeIyIedi~llis~~~~~~~~~ee~p~~~~~lk~rq~~~wE~~~~~~~~ssss~~~~~~q~F~EsLitk~iDniqi~Ie 156 (2552)
T COG5043 77 PVEIYIEDIYLLISPQAKNSLTREELPQSQQALKQRQLDSWEILRETLEESSSSPNISRKQSFIESLITKLIDNIQIYIE 156 (2552)
T ss_pred CeEEEEEeeEEEechhhccccccccChHHHHHHHHHHHHHHHHhHHhhhhcccCccccccchHHHHHHHhcccceEEEEE
Confidence 9999999999987665432111 00 00 0011112223345555 7999999999999
Q ss_pred EEEEEEEeCCCCccCCCCCCCCcEEEEEEeeeEEEecCCCceeeccccccccccCCceEEEEEEEEecceeeEecCCCcc
Q 001702 134 TVNLLLVTRGGAQRDGGASWTPPMASITIRNLVLCTTNENWQVVNLKEARDFSLNKKFIYVFKKLEWETLSVDLLPHPDM 213 (1024)
Q Consensus 134 nIHIRYED~~~~~t~g~~~~~PFsaGITLseLSaqSTDenWqpsdL~~tR~~s~~k~~ilIFKlL~wqsLSIYl~p~~dm 213 (1024)
+|||||||..++ ....|+++|+|+.+|++.|||++|.+.++... +..+||+++++.++|||.+.+..
T Consensus 157 dIhlrfed~~s~-----~~~g~ysfgltl~slra~std~~wte~fv~t~--------s~~i~kL~tl~~f~iy~~e~~pc 223 (2552)
T COG5043 157 DIHLRFEDNLSA-----DLEGPYSFGLTLYSLRATSTDASWTEYFVSTD--------SSCIHKLITLDYFSIYWCEISPC 223 (2552)
T ss_pred eeEEEEecCccc-----ccccceeeccEeeeEEEEecCccchhhhhhcc--------hhhhhheeeeeeeEEeeccCccc
Confidence 999999997642 23348999999999999999999999988754 57999999999999999655444
Q ss_pred cccccccc----cccCCCCCCCCCCceeecCcceeeeeeeeEEEEEEcccCCCCCccceeeeeeccccccccCHHHHHHH
Q 001702 214 FADGSIAR----SNEGASHRDEDGAKRAFFGGERFIEGISAQAYITVQRTELNSPLGLEVQLHVTEAVCPALSEPGLRAL 289 (1024)
Q Consensus 214 f~d~~~~~----sq~~iss~de~~P~RyIf~~qyILkPISG~ARLtlNR~e~Dsp~~~kVqLlI~DEI~~~LSd~QYrdl 289 (1024)
..+-.... .+..+. +.... -.||||+|++|.|++++||-.++.-++..-| +.++++.+.|+|.||.++
T Consensus 224 I~~~did~~Lenfq~~i~--e~~~~-----~neYilkpVrgtakvsinklpt~Eipr~~~q-~s~~ef~~sl~d~~~~~~ 295 (2552)
T COG5043 224 ITTEDIDSYLENFQPMIA--EKSPA-----YNEYILKPVRGTAKVSINKLPTDEIPRLRGQ-LSVEEFSISLSDHMYYSL 295 (2552)
T ss_pred cchhhHHHHHHHHHHHHH--Hhhhh-----hhheeecccceeeEeeeccCCchHHhhHhhc-cccccCCceecHHHHHHH
Confidence 43221110 011111 11112 1279999999999999999887765566554 368999999999999999
Q ss_pred HHHHHHHHHHhc
Q 001702 290 LRFLSGLYVCLN 301 (1024)
Q Consensus 290 L~fl~SL~r~~~ 301 (1024)
|..+..++..|.
T Consensus 296 l~vl~~lQ~vm~ 307 (2552)
T COG5043 296 LGVLDYLQVVMK 307 (2552)
T ss_pred HHHHHHHHHHHH
Confidence 999999998876
No 3
>KOG1809 consensus Vacuolar protein sorting-associated protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8.1e-33 Score=349.28 Aligned_cols=272 Identities=16% Similarity=0.215 Sum_probs=215.3
Q ss_pred ChhHHHHHHHHHHHHHhcCCCccCcce--ecCeEEeeccccchhhhhhhcCCCCeeEEeEEEeeeEEEEcCccccccccc
Q 001702 1 MESIIARALEYTFKYWLKSFSRDQFKL--QGRTAQLSNLDINGDALHASMGLPPALHVTTAKLGKLEIILPSSVSNVQIE 78 (1024)
Q Consensus 1 MESLVa~lLnryLgkYVKNLdpDQLnL--sGGdVeL~NLeLKedALde~L~LP~~L~V~~G~~GkLtLkIP~SWTNLKse 78 (1024)
+|++++++|||+||.||+||+++|++| |||+|+|+||++|++||++ |++| ++|+.|++|+++|+|| |+||+++
T Consensus 2 le~~v~~lLnr~LG~yv~nld~~QL~lgIw~GdV~l~nL~ik~~aL~~-L~~P--~~v~~g~ig~l~L~IP--w~sL~~~ 76 (1827)
T KOG1809|consen 2 LESLVADLLNRFLGDYVENLDRSQLNLGIWGGDVVLSNLQIKESALSK-LDLP--FEVKSGLIGTLTLKIP--WKSLYNK 76 (1827)
T ss_pred cHHHHHHHHHHHhhhcccCCCCCcceEEEecceeEeechhhCHHHHhc-cCCC--eEEeeeeeeeEEEecc--chhcccC
Confidence 589999999999999999999999998 8889999999999999996 9999 8999999999999999 9999999
Q ss_pred cEEEEeccEEEEeecCCCcccccc----------CC-------CC-CCCCCCCCCCCC----chHHHhhcCeEEEEEEEE
Q 001702 79 PIVLQVDRLDLVLEENPDKDACNY----------AS-------ST-PTPTGSSKGSGY----GFADKIADGMTLQVNTVN 136 (1024)
Q Consensus 79 PV~I~ID~IyLvlep~~~~e~~r~----------~~-------~s-s~~~ss~~~~~Y----GFitKIIDNLQV~InnIH 136 (1024)
||++.||+||+++.|.+...+... +. +. ......+ .... +++++|++|+|+.|.|||
T Consensus 77 pv~~~i~~i~~l~~p~s~~~~~~~~~~~~~~~~k~~~~~~~e~~~~~~~~~~~-~~~~~F~e~lit~ii~nlqv~isniH 155 (1827)
T KOG1809|consen 77 PVEINIEDIYLLVVPLSNVKYDPESEAKLSFELKTEYLERIEEAKKKRTEPDQ-EKTDTFGESLITQIIFNLQVSISNIH 155 (1827)
T ss_pred ceEEEEeeeeeEeecccccccCchhhhhHHHHHHHhhhhhHHHHhhhcccccc-cccchHHHHHHHHHHhhccceeEEEE
Confidence 999999999999988875432210 00 00 0000011 1122 358899999999999999
Q ss_pred EEEEeCCCCccCCCCCCCCcEEEEEEeeeEEEecCCCceeeccccccccccCCceEEEEEEEEecceeeEecCCCccccc
Q 001702 137 LLLVTRGGAQRDGGASWTPPMASITIRNLVLCTTNENWQVVNLKEARDFSLNKKFIYVFKKLEWETLSVDLLPHPDMFAD 216 (1024)
Q Consensus 137 IRYED~~~~~t~g~~~~~PFsaGITLseLSaqSTDenWqpsdL~~tR~~s~~k~~ilIFKlL~wqsLSIYl~p~~dmf~d 216 (1024)
|||||... ++|++|+++.+++++|||++|.|+...++ ...+||+++++.+++||+...+|...
T Consensus 156 lr~ed~~~---------~~fs~g~~l~~l~~~t~d~~w~~~~~~~~--------~~~~~kl~~l~~~~~y~n~~~~~~~~ 218 (1827)
T KOG1809|consen 156 LRYEDEIT---------DGFSFGITLPELSAVTTDEEWTPCLSDQT--------GKIIYKLVTLSGLAIYWNSCSEMSSQ 218 (1827)
T ss_pred Eecccccc---------cceeeeeeehhhhhhhccccccccccccc--------cceEEEEEEeccccccccccchhhcC
Confidence 99999752 24999999999999999999999976632 57899999999999999977777655
Q ss_pred ccccccc---cCCCCCCCCCCceeecCcceeeeeeeeEEEEEEcccCCCC--CccceeeeeeccccccccCHHHHHHHHH
Q 001702 217 GSIARSN---EGASHRDEDGAKRAFFGGERFIEGISAQAYITVQRTELNS--PLGLEVQLHVTEAVCPALSEPGLRALLR 291 (1024)
Q Consensus 217 ~~~~~sq---~~iss~de~~P~RyIf~~qyILkPISG~ARLtlNR~e~Ds--p~~~kVqLlI~DEI~~~LSd~QYrdlL~ 291 (1024)
....... ..+.......+ +.+||++||++.|++++||..... -+..+.+ +.++++.+++++.||.+++.
T Consensus 219 ~~~~~~~~~~~~i~~~~~~~~-----gy~~i~~pi~~~a~l~~~~~~~~~~~iP~~~~~-~~~~~~~~~~~~~qy~~~~~ 292 (1827)
T KOG1809|consen 219 SDPDESLDFKQRIVNFRVVPP-----GYNYILKPISGNAKLKQNRVPTLEFSIPKIDLN-VEMHAEALTFSDAQYDDIME 292 (1827)
T ss_pred CCHHHHhhHhhhhcccccCcc-----ccceEEEEecccccccccccccccccCCccccc-cchhhhheeechhhhhhHHH
Confidence 4433211 11111111122 457899999999999999776544 2344333 36899999999999999999
Q ss_pred HHHHHHHHhc
Q 001702 292 FLSGLYVCLN 301 (1024)
Q Consensus 292 fl~SL~r~~~ 301 (1024)
++.++++.+.
T Consensus 293 l~~~v~~~~~ 302 (1827)
T KOG1809|consen 293 LLESVERVKT 302 (1827)
T ss_pred HHHHHHHHHh
Confidence 9999987754
No 4
>PF12624 Chorein_N: N-terminal region of Chorein, a TM vesicle-mediated sorter
Probab=99.80 E-value=1e-19 Score=171.77 Aligned_cols=92 Identities=27% Similarity=0.573 Sum_probs=86.7
Q ss_pred ChhHHHHHHHHHHHHHhcCCCccCcce--ecCeEEeeccccchhhhhhhcCCCCeeEEeEEEeeeEEEEcCccccccccc
Q 001702 1 MESIIARALEYTFKYWLKSFSRDQFKL--QGRTAQLSNLDINGDALHASMGLPPALHVTTAKLGKLEIILPSSVSNVQIE 78 (1024)
Q Consensus 1 MESLVa~lLnryLgkYVKNLdpDQLnL--sGGdVeL~NLeLKedALde~L~LP~~L~V~~G~~GkLtLkIP~SWTNLKse 78 (1024)
+|++++.+|++|||+|++|++++|+++ ++|+++|+||+||+++|+. ++|| +.|++|+||+++++|| |++|+++
T Consensus 1 fe~~v~~~L~~~Lg~yi~~l~~~ql~vsl~~G~v~L~nl~l~~~~l~~-~~lP--~~v~~g~i~~l~i~IP--w~~l~~~ 75 (118)
T PF12624_consen 1 FESLVSSLLNKYLGRYIENLDKDQLSVSLWNGEVELRNLELKKDALNN-LGLP--IEVKSGSIGKLRIKIP--WTSLWSK 75 (118)
T ss_pred CHHHHHHHHHHHHHHHHhcCCHHHeeeeeccCceEEEccEeeHHHhcC-cCCC--eEEeEEEeeeEEEEEE--hHHhCCC
Confidence 589999999999999999999999987 6669999999999999995 8999 9999999999999999 9999999
Q ss_pred cEEEEeccEEEEeecCCCc
Q 001702 79 PIVLQVDRLDLVLEENPDK 97 (1024)
Q Consensus 79 PV~I~ID~IyLvlep~~~~ 97 (1024)
|++|.|++|++++.+....
T Consensus 76 pv~i~I~~v~l~~~~~~~~ 94 (118)
T PF12624_consen 76 PVVIEIEDVFLVLKPKDQD 94 (118)
T ss_pred CEEEEEeeEEEEEEECCcc
Confidence 9999999999999887643
No 5
>PF10351 Apt1: Golgi-body localisation protein domain; InterPro: IPR019443 The function of the FMP27 protein is not known. FMP27 is the product of a nuclear encoded gene but it is detected in highly purified mitochondria in high-throughput studies []. This domain is found in fungi, metazoans and plants. These include FMP27 and "maize" protein APT1 and Arabidopsis homologues SABRE and KIP. APT1 is required for pollen tube growth. It is a Golgi-localised protein and appears to regulate vesicular trafficking []. SABRE and KIP are APT1 homologues and they are involved in the elongation of root cortex cells and pollen tubes respectively.
Probab=32.99 E-value=1.6e+02 Score=34.69 Aligned_cols=127 Identities=20% Similarity=0.311 Sum_probs=91.7
Q ss_pred cCceeEEEeeeEEEeeechhHH--HHHHhhhcccceeeeccccccccccceeeeeeeeeccCCCCCceeecccccccccc
Q 001702 318 GRSLVSIVVDHIFLCIKDAEFQ--LELLMQSLFFSRATVSDGETASNLTKITVAGLFLRDTFSRPPSTLVQPSMQAVSED 395 (1024)
Q Consensus 318 g~~~v~~~vdhifl~ikd~~f~--~ell~~~~~~~ra~~~~~~~~~~l~~i~igglflrd~f~~ppc~lvqpsm~~~~~~ 395 (1024)
......|.+|+|.+-.-|.+=+ +++-++++.|.|-.-+||-+. .++.||.+-..+.- | .
T Consensus 168 ~~~~~~i~~~eiiw~ll~~d~~pfi~~~L~~~~f~r~~~~dgs~~---n~l~I~~l~~~Nl~---------~------~- 228 (457)
T PF10351_consen 168 SALRWEISADEIIWHLLDDDGQPFIDLALANISFSRVQNSDGSNS---NRLEIGMLQVFNLL---------P------N- 228 (457)
T ss_pred ceEEEEEEcceEEEEeecCCCCccEEEEecCcEEEEEEcCCCCce---EEEEEEEEEEEcCC---------C------C-
Confidence 3566788999999988776322 477889999999999988654 47889988877752 1 1
Q ss_pred CCCcchhhhccCCccccCCcccceeecCcceEEEeecccccCCCCCCccccceeeccceEEEecccchhhhhhhccCc
Q 001702 396 LVLIPDFAKDFCPVICPLGDQQWQINKGVPLICLHTLQVKPSPAPPSFASRTVISCQPLMIHLQEESCLRISSFLADG 473 (1024)
Q Consensus 396 ~~~vp~fa~~~~p~i~p~~~~~~~~~~~~pl~cl~~~q~~psp~pp~~as~tvi~cqpl~i~lqe~sclrissfladg 473 (1024)
+.|..-++|-.= +. ......|||-+|.-+..|-.-=|-+- ..-|.+|||.|+|=|+.=-+|-.|+-=+
T Consensus 229 ----a~y~~iL~p~~~--~~---~~~~~~~~l~v~w~~~~pVGGI~V~e-~~ev~l~PL~iqld~~~~~kl~~y~FP~ 296 (457)
T PF10351_consen 229 ----AVYPEILSPYES--NP---PDSDRKPMLRVFWRMLPPVGGIPVIE-HFEVNLQPLKIQLDEETGKKLMEYFFPK 296 (457)
T ss_pred ----CCchhheecccc--cC---CCcCCCceEEEEEeecCCcCCcceEe-eEEEEEeceEEEEhHHHHHHHHHHhCCC
Confidence 112222333221 11 23567899999999998877666444 4678999999999999999999998533
No 6
>PF05236 TAF4: Transcription initiation factor TFIID component TAF4 family; InterPro: IPR007900 Accurate transcription initiation at protein-coding genes by RNA polymerase II requires the assembly of a multiprotein complex around the mRNA start site. Transcription factor TFIID is one of the general factors involved in this process. Yeast TFIID comprises the TATA binding protein and 14 TBP-associated factors (TAFIIs), nine of which contain histone-fold domains (IPR007124 from INTERPRO). The C-terminal region of the TFIID-specific yeast TAF4 (yTAF4) containing the HFD shares strong sequence similarity with Drosophila (d)TAF4 and human TAF4. A structure/function analysis of yTAF4 demonstrates that the HFD, a short conserved C-terminal domain (CCTD), and the region separating them are all required for yTAF4 function. This region of similarity is found in Transcription initiation factor TFIID component TAF4 []. ; GO: 0006352 transcription initiation, DNA-dependent, 0005669 transcription factor TFIID complex; PDB: 1H3O_C.
Probab=27.41 E-value=20 Score=39.20 Aligned_cols=17 Identities=35% Similarity=0.589 Sum_probs=0.0
Q ss_pred EEeechhhhccChhhhh
Q 001702 922 VELKDWLFALEGAQEME 938 (1024)
Q Consensus 922 i~l~dwlfaleg~~~~~ 938 (1024)
|+||||||+||.--.+.
T Consensus 239 I~lrD~l~~LE~e~~~~ 255 (264)
T PF05236_consen 239 ITLRDLLFVLERERRGS 255 (264)
T ss_dssp -----------------
T ss_pred eehhhhHHHHhhCCcch
Confidence 99999999999755443
No 7
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=14.77 E-value=89 Score=33.83 Aligned_cols=68 Identities=25% Similarity=0.320 Sum_probs=46.9
Q ss_pred echhHHHHHHhhhcccceeeeccccccccccceee-eeeeeeccCCCCCceeeccccccccccCCCcchhhhccC
Q 001702 334 KDAEFQLELLMQSLFFSRATVSDGETASNLTKITV-AGLFLRDTFSRPPSTLVQPSMQAVSEDLVLIPDFAKDFC 407 (1024)
Q Consensus 334 kd~~f~~ell~~~~~~~ra~~~~~~~~~~l~~i~i-gglflrd~f~~ppc~lvqpsm~~~~~~~~~vp~fa~~~~ 407 (1024)
+|+-|| |+.|+.++|++.++-+.+-+- ||+. ++=|.--++. =|.+-||-+......-+.+|.+.+.|-
T Consensus 41 ~~~~fq---~lrsfrrvRi~f~~p~~a~~a-~i~~~~~~f~~~~~~--k~yfaQ~~~~~~~~q~L~pP~~eKqFL 109 (193)
T KOG4019|consen 41 EDATFQ---LLRSFRRVRINFSNPEAAADA-RIKLHSTSFNGKNEL--KLYFAQPGHPESNSQYLQPPEPEKQFL 109 (193)
T ss_pred cchHHH---HHHhhceeEEeccChhHHHHH-HHHhhhcccCCCceE--EEEEccCCCccccccccCCCChhhcee
Confidence 355666 588999999999998876653 4443 3333333332 256678887777667799999999773
No 8
>PF08248 Tryp_FSAP: Tryptophyllin-3 skin active peptide; InterPro: IPR013266 PdT-3 or Tryptophyllin-3 peptide is a subfamily of the family Tryptophyllin and of the superfamily FSAP (Frog Skin Active Peptide). Originally identified in skin extracts of Neotropical leaf frogs, Phyllomedusa sp. This subfamily has an average length of 13 amino acids. The pharmacological activity of the tryptophyllins remains to be established [] but it seems that these peptides possess an action on liver protein synthesis and body weight []. It is thought to possesses insulin-releasing activity [].
Probab=14.38 E-value=72 Score=20.75 Aligned_cols=8 Identities=50% Similarity=1.028 Sum_probs=5.6
Q ss_pred cC-CccccC
Q 001702 406 FC-PVICPL 413 (1024)
Q Consensus 406 ~~-p~i~p~ 413 (1024)
|| |||||.
T Consensus 4 fw~ppiyp~ 12 (12)
T PF08248_consen 4 FWPPPIYPV 12 (12)
T ss_pred cCCCCcccC
Confidence 55 579984
No 9
>PF12791 RsgI_N: Anti-sigma factor N-terminus; InterPro: IPR024449 The heat shock genes in Bacillus subtilis can be classified into several groups according to their regulation [], and the sigma gene, sigI, of Bacillus subtilis belongs to the group IV heat-shock response genes and has many orthologues in the bacterial phylum Firmicutes []. Regulation of sigma factor I is carried out by RsgI from the same operon. This entry represents the N-terminal cytoplasmic portion of RsgI ('upstream' of the single transmembrane helix) which has been shown to interact directly with Sigma-I [].
Probab=12.31 E-value=1.3e+02 Score=25.51 Aligned_cols=25 Identities=16% Similarity=0.404 Sum_probs=20.0
Q ss_pred EEEEEecCCCcceecCCCCcEEEEeee
Q 001702 609 EVAMVSADGKPLTVVPPPGGVVRIGVA 635 (1024)
Q Consensus 609 e~am~t~dg~pl~~vpppggivr~gv~ 635 (1024)
.+.++|.||+ .+.|+.++| +.||=-
T Consensus 7 ~aiVlT~dGe-F~~ik~~~~-~~vG~e 31 (56)
T PF12791_consen 7 YAIVLTPDGE-FIKIKRKPG-MEVGQE 31 (56)
T ss_pred EEEEEcCCCc-EEEEeCCCC-CcccCE
Confidence 3678899998 567888888 999943
No 10
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=11.67 E-value=60 Score=36.89 Aligned_cols=13 Identities=77% Similarity=1.398 Sum_probs=10.9
Q ss_pred EEecCchhhHHHHHhHhcc
Q 001702 841 VRLGGGMNYAEALLHRFGI 859 (1024)
Q Consensus 841 vrlgggm~y~e~llhrfgi 859 (1024)
||.|||+| ||||+
T Consensus 145 V~~GGG~n------HR~gL 157 (280)
T COG0157 145 VRAGGGDN------HRFGL 157 (280)
T ss_pred HHhcCCcc------ccCCC
Confidence 77899987 89985
Done!