Query 001702
Match_columns 1024
No_of_seqs 150 out of 275
Neff 3.5
Searched_HMMs 29240
Date Tue Mar 26 16:34:25 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001702.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_999-1003//hhsearch_pdb/001702hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1m5s_A Formylmethanofuran--tet 1.0 1 1 15.7 -4.7 12 434-445 232-243 (297)
2 1m5h_A Formylmethanofuran--tet 1.0 1 1 15.6 -5.4 12 434-445 232-243 (297)
3 1ftr_A FTR, formylmethanofuran 1.0 1 1 15.5 -4.7 10 436-445 233-242 (296)
4 1kn7_A RCK4, voltage-gated pot 1.0 1 1 15.0 -0.3 14 608-621 4-17 (78)
5 3rfy_A Peptidyl-prolyl CIS-tra 1.0 1 1 14.0 -2.1 33 642-674 299-345 (369)
6 3s6m_A Peptidyl-prolyl CIS-tra 1.0 1 1 14.0 -2.1 19 655-673 124-142 (167)
7 2ipq_X Hypothetical protein ST 1.0 1 1 13.4 -0.7 28 524-551 29-57 (135)
8 3o0i_A HSP90AA1 protein; HSP90 1.0 1 1 13.4 0.5 60 649-709 153-219 (256)
9 3paj_A Nicotinate-nucleotide p 1.0 1 1 12.9 -1.5 13 841-859 189-201 (320)
10 2ose_A Probable peptidyl-proly 1.0 1 1 12.7 -3.4 29 642-670 141-182 (234)
No 1
>1m5s_A Formylmethanofuran--tetrahydromethanopterin formyltransferase; alpha/beta sandwich; 1.85A {Methanosarcina barkeri} SCOP: d.58.33.1 d.58.33.1
Probab=1.00 E-value=1 Score=15.68 Aligned_cols=12 Identities=8% Similarity=0.360 Sum_probs=5.7
Q ss_pred CCCCCCCCCCCC
Q ss_conf 126999998542
Q 001702 434 VKPSPAPPSFAS 445 (1024)
Q Consensus 434 ~~psp~pp~~as 445 (1024)
+..|-+||---+
T Consensus 232 ~~~S~lp~~v~~ 243 (297)
T 1m5s_A 232 IENTEIPADVNA 243 (297)
T ss_dssp CTTCCCCTTCCE
T ss_pred CCCCCCCCCCCE
T ss_conf 655658866775
No 2
>1m5h_A Formylmethanofuran--tetrahydromethanopterin formyltransferase; alpha/beta sandwich; 2.00A {Archaeoglobus fulgidus} SCOP: d.58.33.1 d.58.33.1
Probab=1.00 E-value=1 Score=15.61 Aligned_cols=12 Identities=17% Similarity=0.351 Sum_probs=5.4
Q ss_pred CCCCCCCCCCCC
Q ss_conf 126999998542
Q 001702 434 VKPSPAPPSFAS 445 (1024)
Q Consensus 434 ~~psp~pp~~as 445 (1024)
+..|-+||---+
T Consensus 232 ~~~S~lp~~v~~ 243 (297)
T 1m5h_A 232 VEGTQIPAGVKA 243 (297)
T ss_dssp HSSCCCCTTCCE
T ss_pred CCCCCCCCCCCE
T ss_conf 655658866775
No 3
>1ftr_A FTR, formylmethanofuran\:tetrahydromethanopterin formyltransferase; methanogenesis, archae, acyltransferase, hyperthermophilic, halophilic; 1.70A {Methanopyrus kandleri} SCOP: d.58.33.1 d.58.33.1 PDB: 2fhj_A* 2fhk_A*
Probab=1.00 E-value=1 Score=15.51 Aligned_cols=10 Identities=10% Similarity=0.195 Sum_probs=5.2
Q ss_pred CCCCCCCCCC
Q ss_conf 6999998542
Q 001702 436 PSPAPPSFAS 445 (1024)
Q Consensus 436 psp~pp~~as 445 (1024)
.|-+||---+
T Consensus 233 ~S~lp~~v~~ 242 (296)
T 1ftr_A 233 DNELPEGVKC 242 (296)
T ss_dssp TCCCCTTCCE
T ss_pred CCCCCCCCCE
T ss_conf 2458766775
No 4
>1kn7_A RCK4, voltage-gated potassium channel protein KV1.4; inactivation domain, membrane protein; NMR {Rattus norvegicus} SCOP: j.12.1.1 PDB: 1zto_A*
Probab=1.00 E-value=1 Score=15.00 Aligned_cols=14 Identities=50% Similarity=0.591 Sum_probs=8.1
Q ss_pred EEEEEEECCCCCCE
Q ss_conf 89999732998420
Q 001702 608 IEVAMVSADGKPLT 621 (1024)
Q Consensus 608 ~e~am~tadg~pl~ 621 (1024)
.|||||+||-+---
T Consensus 4 mevamvsadssgcn 17 (78)
T 1kn7_A 4 MEVAMVSAESSGCN 17 (78)
T ss_dssp CCCCCCCCCCTTTS
T ss_pred EEEEEEECCCCCCC
T ss_conf 37887522566653
No 5
>3rfy_A Peptidyl-prolyl CIS-trans isomerase CYP38, chloro; cyclophilin, peptidyl prolyl isomerase, ppiase, TLP,; 2.39A {Arabidopsis thaliana}
Probab=1.00 E-value=1 Score=13.98 Aligned_cols=33 Identities=24% Similarity=0.440 Sum_probs=22.2
Q ss_pred CCCEEEHHHHHH--------------HHHHHCHHHHHHHHHCCCCCC
Q ss_conf 456000336777--------------764100135565451576444
Q 001702 642 NTSVEQLFFVLD--------------IYTYFGRVSEKIVRVGKNKSA 674 (1024)
Q Consensus 642 ntsveql~fvl~--------------ly~y~g~v~e~i~~~~~~~~~ 674 (1024)
||.--|+|++++ -|+-||+|.|-+..+.+-.+-
T Consensus 299 nSngSQFFItl~d~~L~~~~~~~LDgkytVFG~VveGmdVVdkI~~G 345 (369)
T 3rfy_A 299 DSGSSQVFWLLKESELTPSNSNILDGRYAVFGYVTDNEDFLADLKVG 345 (369)
T ss_dssp CCSSCCCCCCCEEEEECSCCCSSSCSCEEEEEEEEESTTGGGGCCTT
T ss_pred CCCCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEECCHHHHHHHHCC
T ss_conf 98652699996265567888854479801899994189999998679
No 6
>3s6m_A Peptidyl-prolyl CIS-trans isomerase; seattle structural genomics center for infectious disease; 1.65A {Burkholderia pseudomallei} SCOP: b.62.1.1 PDB: 3t1u_A*
Probab=1.00 E-value=1 Score=13.96 Aligned_cols=19 Identities=42% Similarity=0.518 Sum_probs=12.0
Q ss_pred HHHHCHHHHHHHHHCCCCC
Q ss_conf 6410013556545157644
Q 001702 655 YTYFGRVSEKIVRVGKNKS 673 (1024)
Q Consensus 655 y~y~g~v~e~i~~~~~~~~ 673 (1024)
|+-||+|.|-+..+.+-..
T Consensus 124 ~~VFG~Vv~G~dvv~~I~~ 142 (167)
T 3s6m_A 124 YAVFGKVVEGQDIVDKIKA 142 (167)
T ss_dssp CCEEEEEEECHHHHHHHTT
T ss_pred CEEEEEEECCHHHHHHHHC
T ss_conf 1199999769999999971
No 7
>2ipq_X Hypothetical protein STY4665; structural genomics, unknown function, PSI, protein structur initiative; 2.20A {Salmonella typhi} SCOP: a.4.5.74
Probab=1.00 E-value=1 Score=13.43 Aligned_cols=28 Identities=21% Similarity=0.322 Sum_probs=15.1
Q ss_pred CCEEEEE-ECEEECCCCCCCCEECCCCCC
Q ss_conf 2005886-011100386553020245789
Q 001702 524 AGARLHI-KKLFFSESPSLKLRLLHLEKD 551 (1024)
Q Consensus 524 ~garlhi-e~l~f~~sp~l~~~ll~l~~d 551 (1024)
++|++|+ ++.+|.-||-.=.|-+.--.+
T Consensus 29 ~~A~VH~V~g~vfLvsP~IF~~Y~~e~~~ 57 (135)
T 2ipq_X 29 ADACVHLTCGFVFISVPGVFFLFLKSHSR 57 (135)
T ss_dssp TTCSEEEETTEEEEETTHHHHHHHHHC--
T ss_pred CCCEEEEECCEEEEECHHHHHHHHHHCCC
T ss_conf 99737998897799774999999997576
No 8
>3o0i_A HSP90AA1 protein; HSP90 heat-shock proteins, chaperone-inhibitor complex; HET: P54; 1.47A {Homo sapiens} PDB: 2fwz_A* 2fwy_A* 2h55_A*
Probab=1.00 E-value=1 Score=13.41 Aligned_cols=60 Identities=25% Similarity=0.266 Sum_probs=0.0
Q ss_pred HHHHHHHHHHCHHHHHHHHHCCCCCCCCCCCCCCCCCCCC-------CCCCCCEEEEEECCCEEEEEC
Q ss_conf 3677776410013556545157644444577641122221-------278861589861341112203
Q 001702 649 FFVLDIYTYFGRVSEKIVRVGKNKSAMKSGNESLGVKLME-------NAPNDTAVSLAVKDLQLRFLE 709 (1024)
Q Consensus 649 ~fvl~ly~y~g~v~e~i~~~~~~~~~~~~~~~s~~~~l~~-------~~p~dtav~l~~~~l~~~fle 709 (1024)
||=.++|+.|- |++++...++.+...-..=++.+++-.. ..|.-|.|.|.+|..+-.|+|
T Consensus 153 ~fG~Gf~S~f~-Vadkv~V~Sr~~~~~g~~w~s~gg~~~~v~~~~~~~~~~GT~I~l~LK~~~~e~~e 219 (256)
T 3o0i_A 153 QFGVGFYSAYL-VAEKVTVITKHNDDEQYAWESSAGGSFTVRTDTGEPMGRGTKVILHLKEDQTEYLE 219 (256)
T ss_dssp GGTCGGGGGGG-TEEEEEEEEECTTSCEEEEEECSTTEEEEEECCSSCCSSEEEEEEEECGGGGGGGC
T ss_pred CCCCHHHHHHC-CCCEEEEEECCCCCCEEEEEEECCCEEEEEECCCCCCCCCCEEEEEECCCCHHHCC
T ss_conf 77616788646-58869999757998669999944613788667878789990899997676222146
No 9
>3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel, pyridin dicarboxylate, 5-phospho-alpha-D-ribose 1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor}
Probab=1.00 E-value=1 Score=12.90 Aligned_cols=13 Identities=62% Similarity=1.181 Sum_probs=0.0
Q ss_pred EEECCCHHHHHHHHHHHCC
Q ss_conf 7745852467888867142
Q 001702 841 VRLGGGMNYAEALLHRFGI 859 (1024)
Q Consensus 841 vrlgggm~y~e~llhrfgi 859 (1024)
||.|||.| ||||+
T Consensus 189 V~~GGg~n------HR~gL 201 (320)
T 3paj_A 189 VACGGGYN------HRIGV 201 (320)
T ss_dssp HHHTTCBC------CCSSS
T ss_pred HHHCCCCC------EECCC
T ss_conf 88648435------42366
No 10
>2ose_A Probable peptidyl-prolyl CIS-trans isomerase; cyclophilin; 2.04A {Mimivirus}
Probab=1.00 E-value=1 Score=12.68 Aligned_cols=29 Identities=17% Similarity=0.142 Sum_probs=0.0
Q ss_pred CCCEEEHHHHHHH-------------HHHHCHHHHHHHHHCC
Q ss_conf 4560003367777-------------6410013556545157
Q 001702 642 NTSVEQLFFVLDI-------------YTYFGRVSEKIVRVGK 670 (1024)
Q Consensus 642 ntsveql~fvl~l-------------y~y~g~v~e~i~~~~~ 670 (1024)
||.--|+|+++.- |+-||+|.|-+..+.+
T Consensus 141 ntngSQFFIt~~~~~~~~g~p~LDg~~tVFG~Vv~GmdVv~~ 182 (234)
T 2ose_A 141 RYYDSTFMITLDDIRPSNVLDELDRDQVVIGQVYGGLDVLDK 182 (234)
T ss_dssp EEBCSCEEEESSCCCTTSSGGGSCTTSEEEEEEEECHHHHHH
T ss_pred CCCCCEEEEEECCCCCCCCCCCCCCCEEEEEEEECCHHHHHH
T ss_conf 985425999941765668886558981499998688999999
Done!