BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001703
(1024 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3KWT|A Chain A, Munc13-1 C2b-Domain, Calcium-Free
pdb|3KWU|A Chain A, Munc13-1 C2b-Domain, Calcium Bound
Length = 148
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 67/144 (46%), Gaps = 25/144 (17%)
Query: 3 STRLYVYVLQGQDLLAKDS------YVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHNI 56
S ++ + V+ Q L AKD YV VQ+GK K +++ + N NPVW E F F HN
Sbjct: 16 SAKISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGNLNPVWEENFHFECHNS 75
Query: 57 DDEELVVSVFQHNDD------SGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETP 110
D + V V +DD S + +G+ + V +++ E W++L+
Sbjct: 76 SD-RIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTLSGE-----MDVWYNLD-- 127
Query: 111 KTRKFTNKDC--GKILLTISLNGK 132
K T+K G I L IS+ K
Sbjct: 128 ---KRTDKSAVSGAIRLHISVEIK 148
Score = 33.1 bits (74), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 29/129 (22%), Positives = 50/129 (38%), Gaps = 10/129 (7%)
Query: 538 LTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAMEEPPS 597
+++ +V L + + TG SDPYV + + +P W + F+
Sbjct: 19 ISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGNLNPVWEENFHFECHNSSDR 78
Query: 598 VLDVEVFDFDGPFDQATS--LGHAEINFLKHTSTELA------DMWVSLEGKLAQSAQS- 648
+ V V D D +FL T E+ D+W +L+ + +SA S
Sbjct: 79 I-KVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTLSGEMDVWYNLDKRTDKSAVSG 137
Query: 649 KVHLRIFLE 657
+ L I +E
Sbjct: 138 AIRLHISVE 146
>pdb|2NSQ|A Chain A, Crystal Structure Of The C2 Domain Of The Human E3
Ubiquitin-Protein Ligase Nedd4-Like Protein
Length = 155
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 57/124 (45%), Gaps = 21/124 (16%)
Query: 6 LYVYVLQGQDLLAKD------SYVKVQIGKHKS-------KSRILKNNSNPVWNEEFVFR 52
L V V+ G DL KD YVK+ + +++ +K NP WNEEF FR
Sbjct: 23 LRVKVVSGIDLAKKDIFGASDPYVKLSLYVADENRELALVQTKTIKKTLNPKWNEEFYFR 82
Query: 53 VHNIDDEELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFS--LETP 110
V N + L+ VF N + + +G+V VP+S + ED M P F L P
Sbjct: 83 V-NPSNHRLLFEVFDENR-----LTRDDFLGQVDVPLSHLPTEDPTMERPYTFKDFLLRP 136
Query: 111 KTRK 114
++ K
Sbjct: 137 RSHK 140
>pdb|1DQV|A Chain A, Crystal Structure Of Synaptotagmin Iii C2aC2B
Length = 296
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 53/106 (50%), Gaps = 18/106 (16%)
Query: 537 VLTVALVEGVNLASSEMTGLSDPYVVFTCNG-----KTRTSSVQLQTCDPQWHDILEFDA 591
+LTV +++ NL + ++TG SDPYV + K R +S++ T +P +++ L FD
Sbjct: 153 LLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDV 212
Query: 592 MEEPPSV----LDVEVFDFDGPFDQATSLGHAEINFLKHTSTELAD 633
P SV L + V D+D +GH E+ + E AD
Sbjct: 213 A--PESVENVGLSIAVVDYD-------CIGHNEVIGVCRVGPEAAD 249
Score = 36.6 bits (83), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 34/60 (56%), Gaps = 9/60 (15%)
Query: 3 STRLYVYVLQGQDLLAKDS------YVKVQI---GKHKSKSRILKNNSNPVWNEEFVFRV 53
S +L V +LQ DL AKDS YVK+ + K K ++++ + NP++NE F F V
Sbjct: 19 SDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSV 78
Score = 30.0 bits (66), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 8/67 (11%)
Query: 11 LQGQDLLA-KDSYVKVQI---GKH--KSKSRILKNNSNPVWNEEFVFRV--HNIDDEELV 62
L+ DL D YVK + G+ K K+ I KN NP +NE VF V ++++ L
Sbjct: 164 LKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLS 223
Query: 63 VSVFQHN 69
++V ++
Sbjct: 224 IAVVDYD 230
>pdb|3HN8|A Chain A, Crystal Structure Of Synaptotagmin
pdb|3HN8|B Chain B, Crystal Structure Of Synaptotagmin
pdb|3HN8|C Chain C, Crystal Structure Of Synaptotagmin
Length = 296
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 53/106 (50%), Gaps = 18/106 (16%)
Query: 537 VLTVALVEGVNLASSEMTGLSDPYVVFTCNG-----KTRTSSVQLQTCDPQWHDILEFDA 591
+LTV +++ NL + ++TG SDPYV + K R +S++ T +P +++ L FD
Sbjct: 154 LLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDV 213
Query: 592 MEEPPSV----LDVEVFDFDGPFDQATSLGHAEINFLKHTSTELAD 633
P SV L + V D+D +GH E+ + E AD
Sbjct: 214 A--PESVENVGLSIAVVDYD-------CIGHNEVIGVCRVGPEAAD 250
Score = 36.6 bits (83), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 34/60 (56%), Gaps = 9/60 (15%)
Query: 3 STRLYVYVLQGQDLLAKDS------YVKVQI---GKHKSKSRILKNNSNPVWNEEFVFRV 53
S +L V +LQ DL AKDS YVK+ + K K ++++ + NP++NE F F V
Sbjct: 20 SDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSV 79
Score = 30.0 bits (66), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 8/67 (11%)
Query: 11 LQGQDLLA-KDSYVKVQI---GKH--KSKSRILKNNSNPVWNEEFVFRV--HNIDDEELV 62
L+ DL D YVK + G+ K K+ I KN NP +NE VF V ++++ L
Sbjct: 165 LKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLS 224
Query: 63 VSVFQHN 69
++V ++
Sbjct: 225 IAVVDYD 231
>pdb|2EP6|A Chain A, Solution Structure Of The Second C2 Domain From Human
Mctp2 Protein
Length = 133
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 48/93 (51%), Gaps = 12/93 (12%)
Query: 6 LYVYVLQGQDLLA------KDSYVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHNIDDE 59
L V VL+ DLLA D + +++G + ++ + N NP WN+ F F + +I D
Sbjct: 15 LQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDIHD- 73
Query: 60 ELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSI 92
L V+VF + D + +G+V +P+ SI
Sbjct: 74 VLEVTVFDEDGD-----KPPDFLGKVAIPLLSI 101
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Query: 524 GSDHGVKAQGDGWVLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQW 583
GS VK G +L V +++ +L +++ +G SDP+ + + + +P+W
Sbjct: 4 GSSGDVKDVG---ILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEW 60
Query: 584 HDILEFDAMEEPPSVLDVEVFDFDG 608
+ + F +++ VL+V VFD DG
Sbjct: 61 NKVFTF-PIKDIHDVLEVTVFDEDG 84
>pdb|3JZY|A Chain A, Crystal Structure Of Human Intersectin 2 C2 Domain
Length = 510
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 50/105 (47%), Gaps = 11/105 (10%)
Query: 5 RLYVYVLQGQDLLA------KDSYVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHNIDD 58
RL V+V++ +L A + Y ++ +G +R +++ NP WN F + ++
Sbjct: 388 RLMVHVIEATELKACKPNGKSNPYCEISMGSQSYTTRTIQDTLNPKWNFNCQFFIKDLYQ 447
Query: 59 EELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPT 103
+ L +++F D F S + +GR +PV+ I E P T
Sbjct: 448 DVLCLTLF----DRDQF-SPDDFLGRTEIPVAKIRTEQESKGPMT 487
Score = 34.7 bits (78), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 43/96 (44%), Gaps = 2/96 (2%)
Query: 530 KAQGDGWVLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEF 589
K G G L V ++E L + + G S+PY + ++ T+ T +P+W+ +F
Sbjct: 382 KTSGIGR-LMVHVIEATELKACKPNGKSNPYCEISMGSQSYTTRTIQDTLNPKWNFNCQF 440
Query: 590 DAMEEPPSVLDVEVFDFDGPFDQATSLGHAEINFLK 625
+ VL + +FD D F LG EI K
Sbjct: 441 FIKDLYQDVLCLTLFDRDQ-FSPDDFLGRTEIPVAK 475
>pdb|3B7Y|A Chain A, Crystal Structure Of The C2 Domain Of The E3 Ubiquitin-
Protein Ligase Nedd4
pdb|3B7Y|B Chain B, Crystal Structure Of The C2 Domain Of The E3 Ubiquitin-
Protein Ligase Nedd4
Length = 153
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 50/103 (48%), Gaps = 13/103 (12%)
Query: 11 LQGQDLL-AKDSYVKVQIGKHKS------KSRILKNNSNPVWNEEFVFRVHNIDDEELVV 63
L +D+L A D YV+V + + +++ +K + NP WNEE +FRVH L+
Sbjct: 32 LAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFRVHP-QQHRLLF 90
Query: 64 SVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFS 106
VF N + + +G+V VP+ + E+ + P F
Sbjct: 91 EVFDENR-----LTRDDFLGQVDVPLYPLPTENPRLERPYTFK 128
Score = 34.7 bits (78), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 11/77 (14%)
Query: 537 VLTVALVEGVNLASSEMTGLSDPYVVFTC----NGKTRTSSVQLQTC----DPQWHDILE 588
++ V ++ G+ LA ++ G SDPYV T NG +SVQ +T +P+W++ +
Sbjct: 21 IVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGV--LTSVQTKTIKKSLNPKWNEEIL 78
Query: 589 FDAMEEPPSVLDVEVFD 605
F + +L EVFD
Sbjct: 79 FRVHPQQHRLL-FEVFD 94
>pdb|3M7F|B Chain B, Crystal Structure Of The Nedd4 C2GRB10 SH2 COMPLEX
Length = 176
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 53/106 (50%), Gaps = 21/106 (19%)
Query: 11 LQGQDLL-AKDSYVKVQIGKHKS------KSRILKNNSNPVWNEEFVFRV----HNIDDE 59
L +D+L A D YV+V + S +++ +K + NP WNEE +FRV H I
Sbjct: 20 LAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFRVLPQRHRI--- 76
Query: 60 ELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWF 105
+F+ D++ L + + +G+V VP+ + E+ M P F
Sbjct: 77 -----LFEVFDENRL--TRDDFLGQVDVPLYPLPTENPRMERPYTF 115
Score = 37.7 bits (86), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 7/78 (8%)
Query: 534 DGWVLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTR--TSSVQLQTC----DPQWHDIL 587
D V+ V ++ G+ LA ++ G SDPYV T +SVQ +T +P+W++ +
Sbjct: 6 DTRVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEI 65
Query: 588 EFDAMEEPPSVLDVEVFD 605
F + + +L EVFD
Sbjct: 66 LFRVLPQRHRIL-FEVFD 82
>pdb|3PFQ|A Chain A, Crystal Structure And Allosteric Activation Of Protein
Kinase C Beta Ii
Length = 674
Score = 39.7 bits (91), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 74/174 (42%), Gaps = 28/174 (16%)
Query: 524 GSDHG-------VKAQGDGWVLTVALVEGVNLASSEMTGLSDPYVVF------TCNGKTR 570
G+DH ++A D VL V + + NL + GLSDPYV K +
Sbjct: 153 GTDHTERRGRIYIQAHIDREVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQK 212
Query: 571 TSSVQLQTCDPQWHDILEFDAME-EPPSVLDVEVFDFD----GPFDQATSLGHAEINFLK 625
T +++ + +P+W++ F E + L VE++D+D F + S G +E+
Sbjct: 213 TKTIK-SSLNPEWNETFRFQLKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQ--- 268
Query: 626 HTSTELADMWVSLEGKLAQSAQSKVHLRIFLENNNGVETIKEYLTKMEKEVGKK 679
D W L L+Q ++ + E + G E +++ + + G K
Sbjct: 269 ---KAGVDGWFKL---LSQEEGEYFNVPVPPEGSEGNEELRQKFERAKIGQGTK 316
Score = 33.5 bits (75), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 11/79 (13%)
Query: 20 DSYVKVQI-----GKHKSKSRILKNNSNPVWNEEFVFRVHNID-DEELVVSVFQHNDDSG 73
D YVK+++ + K K++ +K++ NP WNE F F++ D D L V ++ +
Sbjct: 194 DPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQLKESDKDRRLSVEIWDWD---- 249
Query: 74 LFGSSGELMGRVRVPVSSI 92
S + MG + +S +
Sbjct: 250 -LTSRNDFMGSLSFGISEL 267
>pdb|1A25|A Chain A, C2 Domain From Protein Kinase C (Beta)
pdb|1A25|B Chain B, C2 Domain From Protein Kinase C (Beta)
Length = 149
Score = 39.3 bits (90), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 47/93 (50%), Gaps = 9/93 (9%)
Query: 522 RKGSDHGVKAQGDGWVLTVALVEGVNLASSEMTGLSDPYVVF------TCNGKTRTSSVQ 575
R+G + ++A D VL V + + NL + GLSDPYV K +T +++
Sbjct: 18 RRGRIY-IQAHIDREVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIK 76
Query: 576 LQTCDPQWHDILEFDAME-EPPSVLDVEVFDFD 607
+ +P+W++ F E + L VE++D+D
Sbjct: 77 C-SLNPEWNETFRFQLKESDKDRRLSVEIWDWD 108
Score = 32.7 bits (73), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 11/79 (13%)
Query: 20 DSYVKVQI-----GKHKSKSRILKNNSNPVWNEEFVFRVHNID-DEELVVSVFQHNDDSG 73
D YVK+++ + K K++ +K + NP WNE F F++ D D L V ++ +
Sbjct: 53 DPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWD---- 108
Query: 74 LFGSSGELMGRVRVPVSSI 92
S + MG + +S +
Sbjct: 109 -LTSRNDFMGSLSFGISEL 126
>pdb|1BYN|A Chain A, Solution Structure Of The Calcium-Bound First C2-Domain Of
Synaptotagmin I
pdb|2K8M|A Chain A, S100a13-C2a Binary Complex Structure
pdb|2K8M|D Chain D, S100a13-C2a Binary Complex Structure
pdb|2K45|A Chain A, C2a Domain Of Synaptototagmin I Solution Structure In The
Fgf-1-C2a Binary Complex: Key Component In The
Fibroblast Growthfactor Non-Classical Pathway
pdb|2K4A|A Chain A, Fgf-1-C2a Binary Complex Structure: A Key Component In The
Fibroblast Growthfactor Non-Classical Pathway
pdb|2KI6|A Chain A, The Fgf1-S100a13-C2a Hetero-Hexameric Complex Structure: A
C In The Non-Classical Pathway For Fgf1 Secretion
pdb|2KI6|F Chain F, The Fgf1-S100a13-C2a Hetero-Hexameric Complex Structure: A
C In The Non-Classical Pathway For Fgf1 Secretion
Length = 128
Score = 37.7 bits (86), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 56/101 (55%), Gaps = 16/101 (15%)
Query: 3 STRLYVYVLQGQDLLA------KDSYVKVQI---GKHKSKSRILKNNSNPVWNEEFVFRV 53
+ +L V ++Q +L A D YVKV + K K ++++ + NPV+NE+F F+V
Sbjct: 16 NNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKV 75
Query: 54 --HNIDDEELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSI 92
+ + LV++V+ D F S +++G +VP++++
Sbjct: 76 PYSELGGKTLVMAVY----DFDRF-SKHDIIGEFKVPMNTV 111
>pdb|3F04|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain
pdb|3F01|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With
Cu(Ii)
pdb|3F05|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With
Mn(Ii)
Length = 143
Score = 37.7 bits (86), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 56/101 (55%), Gaps = 16/101 (15%)
Query: 3 STRLYVYVLQGQDLLA------KDSYVKVQI---GKHKSKSRILKNNSNPVWNEEFVFRV 53
+ +L V ++Q +L A D YVKV + K K ++++ + NPV+NE+F F+V
Sbjct: 33 NNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKV 92
Query: 54 --HNIDDEELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSI 92
+ + LV++V+ D F S +++G +VP++++
Sbjct: 93 PYSELGGKTLVMAVY----DFDRF-SKHDIIGEFKVPMNTV 128
>pdb|2D8K|A Chain A, Solution Structure Of The First C2 Domain Of Synaptotagmin
Vii
Length = 141
Score = 37.7 bits (86), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 50/109 (45%), Gaps = 7/109 (6%)
Query: 537 VLTVALVEGVNLASSEMTGLSDPYV-VFTCNGKTRT--SSVQLQTCDPQWHDILEFDAME 593
LTV +++ L + + +G SDP+V ++ K + V+ + +P W++ F+
Sbjct: 27 TLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFP 86
Query: 594 EPPSV---LDVEVFDFDGPFDQATSLGHAEINFLKHTSTELADMWVSLE 639
V L ++V D+D F + +G I K T++ W L+
Sbjct: 87 YEKVVQRILYLQVLDYDR-FSRNDPIGEVSIPLNKVDLTQMQTFWKDLK 134
Score = 37.0 bits (84), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 33/55 (60%), Gaps = 9/55 (16%)
Query: 6 LYVYVLQGQDLLAKD------SYVKVQI---GKHKSKSRILKNNSNPVWNEEFVF 51
L V +++ Q+L AKD +VK+ + KHK ++++ + N NP WNE F+F
Sbjct: 28 LTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLF 82
>pdb|1RSY|A Chain A, Structure Of The First C2-domain Of Synaptotagmin I: A
Novel Ca2+(slash)phospholipid Binding Fold
Length = 152
Score = 37.7 bits (86), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 56/101 (55%), Gaps = 16/101 (15%)
Query: 3 STRLYVYVLQGQDLLA------KDSYVKVQI---GKHKSKSRILKNNSNPVWNEEFVFRV 53
+ +L V ++Q +L A D YVKV + K K ++++ + NPV+NE+F F+V
Sbjct: 41 NNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKV 100
Query: 54 --HNIDDEELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSI 92
+ + LV++V+ D F S +++G +VP++++
Sbjct: 101 PYSELGGKTLVMAVY----DFDRF-SKHDIIGEFKVPMNTV 136
>pdb|3F00|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With
Cu(Ii)
Length = 143
Score = 37.7 bits (86), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 56/101 (55%), Gaps = 16/101 (15%)
Query: 3 STRLYVYVLQGQDLLA------KDSYVKVQI---GKHKSKSRILKNNSNPVWNEEFVFRV 53
+ +L V ++Q +L A D YVKV + K K ++++ + NPV+NE+F F+V
Sbjct: 33 NNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKV 92
Query: 54 --HNIDDEELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSI 92
+ + LV++V+ D F S +++G +VP++++
Sbjct: 93 PYSELGGKTLVMAVY----DFDRF-SKHDIIGEFKVPMNTV 128
>pdb|2R83|A Chain A, Crystal Structure Analysis Of Human Synaptotagmin 1
C2a-c2b
pdb|2R83|B Chain B, Crystal Structure Analysis Of Human Synaptotagmin 1
C2a-c2b
Length = 284
Score = 37.0 bits (84), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 56/101 (55%), Gaps = 16/101 (15%)
Query: 3 STRLYVYVLQGQDLLA------KDSYVKVQI---GKHKSKSRILKNNSNPVWNEEFVFRV 53
+ +L V ++Q +L A D YVKV + K K ++++ + NPV+NE+F F+V
Sbjct: 18 NNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKV 77
Query: 54 --HNIDDEELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSI 92
+ + LV++V+ D F S +++G +VP++++
Sbjct: 78 PYSELAGKTLVMAVY----DFDRF-SKHDIIGEFKVPMNTV 113
Score = 30.4 bits (67), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 17/24 (70%)
Query: 538 LTVALVEGVNLASSEMTGLSDPYV 561
LTV ++E NL ++ GLSDPYV
Sbjct: 152 LTVVILEAKNLKKMDVGGLSDPYV 175
>pdb|4DNL|A Chain A, Crystal Structure Of A C2 Domain Of A Protein Kinase C
Alpha (Prkca) From Homo Sapiens At 1.90 A Resolution
Length = 140
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 44/95 (46%), Gaps = 12/95 (12%)
Query: 538 LTVALVEGVNLASSEMTGLSDPYVVFTC------NGKTRTSSVQLQTCDPQWHDILEFD- 590
L V + + NL + GLSDPYV K +T +++ T +PQW++ F
Sbjct: 20 LHVTVRDAKNLIPXDPNGLSDPYVKLKLIPDPKNESKQKTKTIR-STLNPQWNESFTFKL 78
Query: 591 AMEEPPSVLDVEVFDFD----GPFDQATSLGHAEI 621
+ L VE++D+D F + S G +E+
Sbjct: 79 KPSDKDRRLSVEIWDWDRTTRNDFXGSLSFGVSEL 113
Score = 35.4 bits (80), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 40/78 (51%), Gaps = 12/78 (15%)
Query: 1 MVSTRLYVYVLQGQDLLAKDS------YVKVQI-----GKHKSKSRILKNNSNPVWNEEF 49
+ +L+V V ++L+ D YVK+++ + K K++ +++ NP WNE F
Sbjct: 15 VADEKLHVTVRDAKNLIPXDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESF 74
Query: 50 VFRVHNID-DEELVVSVF 66
F++ D D L V ++
Sbjct: 75 TFKLKPSDKDRRLSVEIW 92
>pdb|1UGK|A Chain A, Solution Structure Of The First C2 Domain Of Synaptotagmin
Iv From Human Fetal Brain (Kiaa1342)
Length = 138
Score = 35.8 bits (81), Expect = 0.13, Method: Composition-based stats.
Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 7/88 (7%)
Query: 17 LAKDSYVKVQI---GKHKSKSRILKNNSNPVWNEEFVFR-VHNIDDEELVVSVFQHNDDS 72
+ D Y+K+ I KHK K+R+L+ +P ++E F F + +EL + + D
Sbjct: 42 MTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTILSFDR 101
Query: 73 GLFGSSGELMGRVRVPVSSIAAEDNHML 100
S +++G V +P+S I + ML
Sbjct: 102 ---FSRDDIIGEVLIPLSGIELSEGKML 126
>pdb|1V27|A Chain A, Solution Structure Of The First C2 Domain Of Rim2
Length = 141
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 27/120 (22%), Positives = 57/120 (47%), Gaps = 17/120 (14%)
Query: 2 VSTRLYVYVLQGQDLLAKDS------YVKV-----QIGKHKSKSRILKNNSNPVWNEEFV 50
V +L V +L +DL +++ YVK+ + K+K +++ +K P WN+ F+
Sbjct: 19 VGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFI 78
Query: 51 FR-VHNIDDEELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLET 109
+ VH + E ++ + D + + E +G + + + + +D P W+ L+T
Sbjct: 79 YSPVHRREFRERMLEITLW-DQARVREEESEFLGEILIELETALLDDE----PHWYKLQT 133
>pdb|2UZP|A Chain A, Crystal Structure Of The C2 Domain Of Human Protein Kinase
C Gamma.
pdb|2UZP|B Chain B, Crystal Structure Of The C2 Domain Of Human Protein Kinase
C Gamma.
pdb|2UZP|C Chain C, Crystal Structure Of The C2 Domain Of Human Protein Kinase
C Gamma
Length = 144
Score = 35.4 bits (80), Expect = 0.16, Method: Composition-based stats.
Identities = 27/79 (34%), Positives = 38/79 (48%), Gaps = 11/79 (13%)
Query: 20 DSYVKVQI-----GKHKSKSRILKNNSNPVWNEEFVFRVHNIDDE-ELVVSVFQHNDDSG 73
D YVK+++ K K+R +K NPVWNE FVF + D E L V V+ +
Sbjct: 42 DPYVKLKLIPDPRNLTKQKTRTVKATLNPVWNETFVFNLKPGDVERRLSVEVWDWDRT-- 99
Query: 74 LFGSSGELMGRVRVPVSSI 92
S + MG + VS +
Sbjct: 100 ---SRNDFMGAMSFGVSEL 115
Score = 32.7 bits (73), Expect = 1.1, Method: Composition-based stats.
Identities = 32/97 (32%), Positives = 43/97 (44%), Gaps = 20/97 (20%)
Query: 540 VALVEGVNLASSEMTGLSDPYVVFT--------CNGKTRTSSVQLQTCDPQWHDILEFDA 591
V + E NL + GLSDPYV KTRT T +P W++ F+
Sbjct: 24 VTVGEARNLIPMDPNGLSDPYVKLKLIPDPRNLTKQKTRTVKA---TLNPVWNETFVFNL 80
Query: 592 MEEPPSV---LDVEVFDFD----GPFDQATSLGHAEI 621
+P V L VEV+D+D F A S G +E+
Sbjct: 81 --KPGDVERRLSVEVWDWDRTSRNDFMGAMSFGVSEL 115
>pdb|3GPE|A Chain A, Crystal Structure Analysis Of Pkc (Alpha)-C2 Domain
Complexed With Ca2+ And Ptdins(4,5)p2
pdb|3RDJ|A Chain A, Rat Pkc C2 Domain Apo
pdb|3TWY|A Chain A, Rat Pkc C2 Domain Bound To Pb
Length = 137
Score = 35.4 bits (80), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 12/74 (16%)
Query: 5 RLYVYVLQGQDLLA------KDSYVKVQI-----GKHKSKSRILKNNSNPVWNEEFVFRV 53
+L+V V ++L+ D YVK+++ + K K++ +++ NP WNE F F++
Sbjct: 17 KLHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKL 76
Query: 54 HNID-DEELVVSVF 66
D D L V ++
Sbjct: 77 KPSDKDRRLSVEIW 90
Score = 34.7 bits (78), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 8/86 (9%)
Query: 529 VKAQGDGWVLTVALVEGVNLASSEMTGLSDPYVVFTC------NGKTRTSSVQLQTCDPQ 582
+KA+ L V + + NL + GLSDPYV K +T +++ T +PQ
Sbjct: 9 LKAEVTDEKLHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIR-STLNPQ 67
Query: 583 WHDILEFD-AMEEPPSVLDVEVFDFD 607
W++ F + L VE++D+D
Sbjct: 68 WNESFTFKLKPSDKDRRLSVEIWDWD 93
>pdb|1WFJ|A Chain A, C2 Domain-Containing Protein From Putative Elicitor-
Responsive Gene
Length = 136
Score = 35.4 bits (80), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 45/99 (45%), Gaps = 10/99 (10%)
Query: 11 LQGQDLLAK-DSYVKVQIGKHKSKSRILKN-NSNPVWNEEFVFRVHNIDDEELVVSVFQH 68
L+ D L D YV++ KS + + + P WNE F+F V EL +F
Sbjct: 22 LEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSE-GTTELKAKIFDK 80
Query: 69 NDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSL 107
+ G+ + +G +P+ + E + +PPT +++
Sbjct: 81 D-----VGTEDDAVGEATIPLEPVFVEGS--IPPTAYNV 112
Score = 31.2 bits (69), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 5/86 (5%)
Query: 538 LTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSV-QLQTCDPQWHDILEFDAMEEPP 596
L V LV L ++ DPYV TC + + S+V + P+W++ F + E
Sbjct: 12 LEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIF-TVSEGT 70
Query: 597 SVLDVEVFDFD-GPFDQATSLGHAEI 621
+ L ++FD D G D A +G A I
Sbjct: 71 TELKAKIFDKDVGTEDDA--VGEATI 94
>pdb|1RH8|A Chain A, Three-Dimensional Structure Of The Calcium-Free Piccolo
C2a- Domain
Length = 142
Score = 35.4 bits (80), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 27/126 (21%), Positives = 63/126 (50%), Gaps = 31/126 (24%)
Query: 6 LYVYVLQGQDLLAKDS------YVKVQI--------------GKHKSKSRILKNNSNPVW 45
L +++LQ ++L+ +D+ +VKV + ++K +++ ++ + NP W
Sbjct: 20 LIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEW 79
Query: 46 NEEFVFR---VHNIDDEELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPP 102
N+ +++ + + + L V+V+ ++ SS + +G V + +SS + DN P
Sbjct: 80 NQTVIYKSISMEQLMKKTLEVTVWDYDR-----FSSNDFLGEVLIDLSSTSHLDN---TP 131
Query: 103 TWFSLE 108
W+ L+
Sbjct: 132 RWYPLK 137
>pdb|1DSY|A Chain A, C2 Domain From Protein Kinase C (Alpha) Complexed With
Ca2+ And Phosphatidylserine
Length = 139
Score = 35.4 bits (80), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 12/74 (16%)
Query: 5 RLYVYVLQGQDLLA------KDSYVKVQI-----GKHKSKSRILKNNSNPVWNEEFVFRV 53
+L+V V ++L+ D YVK+++ + K K++ +++ NP WNE F F++
Sbjct: 18 KLHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKL 77
Query: 54 HNID-DEELVVSVF 66
D D L V ++
Sbjct: 78 KPSDKDRRLSVEIW 91
Score = 35.0 bits (79), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 8/77 (10%)
Query: 538 LTVALVEGVNLASSEMTGLSDPYVVFTC------NGKTRTSSVQLQTCDPQWHDILEFD- 590
L V + + NL + GLSDPYV K +T +++ T +PQW++ F
Sbjct: 19 LHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIR-STLNPQWNESFTFKL 77
Query: 591 AMEEPPSVLDVEVFDFD 607
+ L VE++D+D
Sbjct: 78 KPSDKDRRLSVEIWDWD 94
>pdb|2K3H|A Chain A, Structural Determinants For Ca2+ And Pip2 Binding By The
C2a Domain Of Rabphilin-3a
Length = 140
Score = 35.0 bits (79), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 17/85 (20%)
Query: 20 DSYVKVQI--GKHKS---KSRILKNNSNPVWNEEFVFRVHNIDDEE-----LVVSVFQHN 69
D YVK+ + G KS +++ L+N NPVWNE + H I +E+ L +SV
Sbjct: 49 DPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQY--HGITEEDMQRKTLRISVC--- 103
Query: 70 DDSGLFGSSGELMGRVRVPVSSIAA 94
D FG + E +G R + + A
Sbjct: 104 -DEDKFGHN-EFIGETRFSLKKLKA 126
>pdb|2CHD|A Chain A, Crystal Structure Of The C2a Domain Of Rabphilin-3a
Length = 142
Score = 35.0 bits (79), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 17/85 (20%)
Query: 20 DSYVKVQI--GKHKS---KSRILKNNSNPVWNEEFVFRVHNIDDEE-----LVVSVFQHN 69
D YVK+ + G KS +++ L+N NPVWNE + H I +E+ L +SV
Sbjct: 51 DPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQY--HGITEEDMQRKTLRISVC--- 105
Query: 70 DDSGLFGSSGELMGRVRVPVSSIAA 94
D FG + E +G R + + A
Sbjct: 106 -DEDKFGHN-EFIGETRFSLKKLKA 128
>pdb|3FBK|A Chain A, Crystal Structure Of The C2 Domain Of The Human Regulator
Of G-Protein Signaling 3 Isoform 6 (Rgp3), Northeast
Structural Genomics Consortium Target Hr5550a
pdb|3FBK|B Chain B, Crystal Structure Of The C2 Domain Of The Human Regulator
Of G-Protein Signaling 3 Isoform 6 (Rgp3), Northeast
Structural Genomics Consortium Target Hr5550a
Length = 153
Score = 34.7 bits (78), Expect = 0.27, Method: Composition-based stats.
Identities = 25/85 (29%), Positives = 46/85 (54%), Gaps = 14/85 (16%)
Query: 6 LYVYVLQGQDLLAK-----DSYVKVQIGKHKSKSRILKNNS-----NPVWNEEFVFRVHN 55
L +++++G+ L++K D YVK+ + S+ R K + +P ++E F F V
Sbjct: 29 LLLHIIEGKGLISKQPGTCDPYVKISLIPEDSRLRHQKTQTVPDCRDPAFHEHFFFPVQE 88
Query: 56 IDDEE-LVVSVFQ---HNDDSGLFG 76
DD++ L+V+V+ + SGL G
Sbjct: 89 EDDQKRLLVTVWNRASQSRQSGLIG 113
>pdb|2BWQ|A Chain A, Crystal Structure Of The Rim2 C2a-Domain At 1.4 Angstrom
Resolution
Length = 129
Score = 33.9 bits (76), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 26/119 (21%), Positives = 56/119 (47%), Gaps = 17/119 (14%)
Query: 2 VSTRLYVYVLQGQDLLAKDS------YVKV-----QIGKHKSKSRILKNNSNPVWNEEFV 50
V +L V +L +DL +++ YVK+ + K+K +++ +K P WN+ F+
Sbjct: 16 VGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFI 75
Query: 51 FR-VHNIDDEELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLE 108
+ VH + E ++ + D + + E +G + + + + +D P W+ L+
Sbjct: 76 YSPVHRREFRERMLEITLW-DQARVREEESEFLGEILIELETALLDDE----PHWYKLQ 129
>pdb|2CJT|A Chain A, Structural Basis For A Munc13-1 Dimeric - Munc13-1 - Rim
Heterodimer Switch: C2-Domains As Versatile Protein-
Protein Interaction Modules
pdb|2CJT|B Chain B, Structural Basis For A Munc13-1 Dimeric - Munc13-1 - Rim
Heterodimer Switch: C2-Domains As Versatile Protein-
Protein Interaction Modules
pdb|2CJT|C Chain C, Structural Basis For A Munc13-1 Dimeric - Munc13-1 - Rim
Heterodimer Switch: C2-Domains As Versatile Protein-
Protein Interaction Modules
pdb|2CJT|D Chain D, Structural Basis For A Munc13-1 Dimeric - Munc13-1 - Rim
Heterodimer Switch: C2-Domains As Versatile Protein-
Protein Interaction Modules
Length = 131
Score = 33.9 bits (76), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 48/90 (53%), Gaps = 9/90 (10%)
Query: 20 DSYVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLFGSSG 79
++YV +++ KS + I S P W ++F+F ++ + D L V V+ + GL +
Sbjct: 24 NTYVTLKVQNVKSTT-IAVRGSQPSWEQDFMFEINRL-DLGLTVEVW----NKGLIWDT- 76
Query: 80 ELMGRVRVPVSSIAAEDNHMLPPTWFSLET 109
++G V +P+ +I + N P W +L++
Sbjct: 77 -MVGTVWIPLRTI-RQSNEEGPGEWLTLDS 104
>pdb|1W15|A Chain A, Rat Synaptotagmin 4 C2b Domain In The Presence Of Calcium
pdb|1W16|A Chain A, Rat Synaptotagmin 4 C2b Domain In The Absence Of Calcium
Length = 153
Score = 33.5 bits (75), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 5/75 (6%)
Query: 538 LTVALVEGVNLASSEMTGLSDPYV-VFTCNGKTRTS--SVQLQTCDPQ--WHDILEFDAM 592
LTV +++ +L S+++GLSDPYV V + K R S ++ C P ++++ FD
Sbjct: 32 LTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIP 91
Query: 593 EEPPSVLDVEVFDFD 607
E + VE D
Sbjct: 92 CESLEEISVEFLVLD 106
Score = 30.4 bits (67), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 8/84 (9%)
Query: 20 DSYVKVQIGK-----HKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGL 74
D YVKV + K K+ + K N V+NE FVF + EE+ V + +
Sbjct: 52 DPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCESLEEISVEFLVLDSER-- 109
Query: 75 FGSSGELMGRVRVPVSSIAAEDNH 98
GS E++GR+ + ++ + H
Sbjct: 110 -GSRNEVIGRLVLGATAEGSGGGH 132
>pdb|1VT4|I Chain I, Structure Of The Drosophila Apoptosome
pdb|1VT4|J Chain J, Structure Of The Drosophila Apoptosome
pdb|1VT4|K Chain K, Structure Of The Drosophila Apoptosome
pdb|1VT4|L Chain L, Structure Of The Drosophila Apoptosome
pdb|1VT4|M Chain M, Structure Of The Drosophila Apoptosome
pdb|1VT4|N Chain N, Structure Of The Drosophila Apoptosome
pdb|1VT4|O Chain O, Structure Of The Drosophila Apoptosome
pdb|1VT4|P Chain P, Structure Of The Drosophila Apoptosome
pdb|3IZ8|A Chain A, Structure Of The Drosophila Apoptosome
pdb|3IZ8|B Chain B, Structure Of The Drosophila Apoptosome
pdb|3IZ8|C Chain C, Structure Of The Drosophila Apoptosome
pdb|3IZ8|D Chain D, Structure Of The Drosophila Apoptosome
pdb|3IZ8|E Chain E, Structure Of The Drosophila Apoptosome
pdb|3IZ8|F Chain F, Structure Of The Drosophila Apoptosome
pdb|3IZ8|G Chain G, Structure Of The Drosophila Apoptosome
pdb|3IZ8|H Chain H, Structure Of The Drosophila Apoptosome
Length = 1221
Score = 33.1 bits (74), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
Query: 635 WVSLEGKLAQSAQSKVHLRIF---LENNNGVETIKEYLTKMEKEVGKKLNLRSPHRNSTF 691
WV+L+ L+ Q K+ +IF L+N N ET+ E L K+ ++ RS H ++
Sbjct: 165 WVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIK 224
Query: 692 QKLFALPPE 700
++ ++ E
Sbjct: 225 LRIHSIQAE 233
>pdb|3NSJ|A Chain A, The X-Ray Crystal Structure Of Lymphocyte Perforin
Length = 540
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 24/41 (58%)
Query: 11 LQGQDLLAKDSYVKVQIGKHKSKSRILKNNSNPVWNEEFVF 51
L G A D+Y+KV G + ++ ++ NN+NP W ++ F
Sbjct: 406 LWGDYTTATDAYLKVFFGGQEFRTGVVWNNNNPRWTDKMDF 446
>pdb|2CJS|A Chain A, Structural Basis For A Munc13-1 Dimeric - Munc13-1 - Rim
Heterodimer Switch: C2-domains As Versatile Protein-
Protein Interaction Modules
pdb|2CJS|B Chain B, Structural Basis For A Munc13-1 Dimeric - Munc13-1 - Rim
Heterodimer Switch: C2-domains As Versatile Protein-
Protein Interaction Modules
Length = 167
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 48/90 (53%), Gaps = 9/90 (10%)
Query: 20 DSYVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLFGSSG 79
++YV +++ +S + I S P W ++F+F ++ + D L V V+ + GL +
Sbjct: 33 NTYVTLKVQNVESTT-IAVRGSQPSWEQDFMFEINRL-DLGLTVEVW----NKGLIWDT- 85
Query: 80 ELMGRVRVPVSSIAAEDNHMLPPTWFSLET 109
++G V +P+ +I + N P W +L++
Sbjct: 86 -MVGTVWIPLRTI-RQSNEEGPGEWLTLDS 113
>pdb|2CM6|A Chain A, Crystal Structure Of The C2b Domain Of Rabphilin3a
pdb|2CM6|B Chain B, Crystal Structure Of The C2b Domain Of Rabphilin3a
Length = 166
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 47/97 (48%), Gaps = 13/97 (13%)
Query: 22 YVKVQIGKH-KSKSRILKNNSNPVWNEEFVFRVHNID--DEELVVSVFQHNDDSGLFGSS 78
++K +GK K K++I K NP +NEEF + + + D + L +SV+ ++ G S
Sbjct: 65 WLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISVWDYD-----IGKS 119
Query: 79 GELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKF 115
+ +G ++ +S+ H W+ K +K
Sbjct: 120 NDYIGGCQLGISAKGERLKH-----WYECLKNKDKKI 151
>pdb|3RPB|A Chain A, The C2b-Domain Of Rabphilin: Structural Variations In A
Janus-Faced Domain
Length = 140
Score = 32.0 bits (71), Expect = 1.9, Method: Composition-based stats.
Identities = 25/96 (26%), Positives = 47/96 (48%), Gaps = 13/96 (13%)
Query: 22 YVKVQIGKH-KSKSRILKNNSNPVWNEEFVFRVHNID--DEELVVSVFQHNDDSGLFGSS 78
++K +GK K K++I K NP +NEEF + + + D + L +SV+ ++ G S
Sbjct: 43 WLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISVWDYD-----IGKS 97
Query: 79 GELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRK 114
+ +G ++ +S+ H W+ K +K
Sbjct: 98 NDYIGGCQLGISAKGERLKH-----WYECLKNKDKK 128
>pdb|3FDW|A Chain A, Crystal Structure Of A C2 Domain From Human Synaptotagmin-
Like Protein 4
pdb|3FDW|B Chain B, Crystal Structure Of A C2 Domain From Human Synaptotagmin-
Like Protein 4
Length = 148
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 53/120 (44%), Gaps = 13/120 (10%)
Query: 538 LTVALVEGVNLA-SSEMTGLSDPYV-VFTCNGKTR----TSSVQLQTCDPQWHDILEFDA 591
L V + E LA + E S+PYV + K+R +S++ T +P + + L +
Sbjct: 25 LVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKRDTVNPLYDETLRY-- 82
Query: 592 MEEPPSVLDVEVFDFD----GPFDQATSLGHAEINFLKHTSTELADMWVSLEGKLAQSAQ 647
E P S+L F G F + T LG AEI + D + L GK++ ++
Sbjct: 83 -EIPESLLAQRTLQFSVWHHGRFGRNTFLGEAEIQMDSWKLDKKLDHCLPLHGKISAESE 141
>pdb|2CM5|A Chain A, Crystal Structure Of The C2b Domain Of Rabphilin
Length = 166
Score = 31.2 bits (69), Expect = 3.1, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 42/88 (47%), Gaps = 12/88 (13%)
Query: 29 KHKSKSRILKNNSNPVWNEEFVFRVHNID--DEELVVSVFQHNDDSGLFGSSGELMGRVR 86
K K K++I K NP +NEEF + + + D + L +SV+ ++ G S + +G +
Sbjct: 73 KAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISVWDYD-----IGKSNDYIGGCQ 127
Query: 87 VPVSSIAAEDNHMLPPTWFSLETPKTRK 114
+ +S+ H W+ K +K
Sbjct: 128 LGISAKGERLKH-----WYECLKNKDKK 150
>pdb|2FJU|B Chain B, Activated Rac1 Bound To Its Effector Phospholipase C Beta
2
pdb|2ZKM|X Chain X, Crystal Structure Of Phospholipase C Beta 2
Length = 799
Score = 31.2 bits (69), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 57/111 (51%), Gaps = 21/111 (18%)
Query: 1 MVSTRLYVYVLQGQDLLAKD--SYVKVQI--------GKHKSKSRILKNNSNPVWNEE-F 49
+V+T L + V+ GQ L + +YV+V++ ++++K N+ NPVW EE F
Sbjct: 675 VVATTLSITVISGQFLSERSVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPF 734
Query: 50 VF-RVHNIDDEELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHM 99
VF ++ + L V+V + + + +G +P++++ + +H+
Sbjct: 735 VFEKILMPELASLRVAVMEEGN---------KFLGHRIIPINALNSGYHHL 776
>pdb|1BCI|A Chain A, C2 Domain Of Cytosolic Phospholipase A2, Nmr, Minimized
Average Structure
Length = 138
Score = 30.8 bits (68), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Query: 13 GQDLLAKDSYVKVQIGK---HKSKSRILKNNSNPVWNEEFVF 51
G L D YV++ I + ++R N+ NPVWNE F F
Sbjct: 36 GDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEF 77
>pdb|1RLW|A Chain A, Calcium-Phospholipid Binding Domain From Cytosolic
Phospholipase A2
Length = 126
Score = 30.8 bits (68), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Query: 13 GQDLLAKDSYVKVQIGK---HKSKSRILKNNSNPVWNEEFVF 51
G L D YV++ I + ++R N+ NPVWNE F F
Sbjct: 21 GDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEF 62
>pdb|1CJY|A Chain A, Human Cytosolic Phospholipase A2
pdb|1CJY|B Chain B, Human Cytosolic Phospholipase A2
Length = 749
Score = 30.4 bits (67), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Query: 13 GQDLLAKDSYVKVQIGK---HKSKSRILKNNSNPVWNEEFVF 51
G L D YV++ I + ++R N+ NPVWNE F F
Sbjct: 36 GDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEF 77
>pdb|1K5W|A Chain A, Three-Dimensional Structure Of The Synaptotagmin 1 C2b-
Domain: Synaptotagmin 1 As A Phospholipid Binding
Machine
Length = 152
Score = 30.4 bits (67), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 17/24 (70%)
Query: 538 LTVALVEGVNLASSEMTGLSDPYV 561
LTV ++E NL ++ GLSDPYV
Sbjct: 20 LTVVILEAKNLKKMDVGGLSDPYV 43
>pdb|2LHA|A Chain A, Solution Structure Of C2b With Ip6
Length = 151
Score = 30.0 bits (66), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 17/24 (70%)
Query: 538 LTVALVEGVNLASSEMTGLSDPYV 561
LTV ++E NL ++ GLSDPYV
Sbjct: 19 LTVVILEAKNLKKMDVGGLSDPYV 42
>pdb|1TJM|A Chain A, Crystallographic Identification Of Sr2+ Coordination Site
In Synaptotagmin I C2b Domain
pdb|1UOV|A Chain A, Calcium Binding Domain C2b
pdb|1UOW|A Chain A, Calcium Binding Domain C2b
pdb|1TJX|A Chain A, Crystallographic Identification Of Ca2+ Coordination Sites
In Synaptotagmin I C2b Domain
Length = 159
Score = 30.0 bits (66), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 17/24 (70%)
Query: 538 LTVALVEGVNLASSEMTGLSDPYV 561
LTV ++E NL ++ GLSDPYV
Sbjct: 27 LTVVILEAKNLKKMDVGGLSDPYV 50
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,886,453
Number of Sequences: 62578
Number of extensions: 1248675
Number of successful extensions: 2927
Number of sequences better than 100.0: 45
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 2874
Number of HSP's gapped (non-prelim): 75
length of query: 1024
length of database: 14,973,337
effective HSP length: 109
effective length of query: 915
effective length of database: 8,152,335
effective search space: 7459386525
effective search space used: 7459386525
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)