Query 001703
Match_columns 1024
No_of_seqs 740 out of 3943
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 07:18:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001703.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001703hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1032 Uncharacterized conser 100.0 1.4E-31 3E-36 313.8 14.7 290 697-1008 117-436 (590)
2 KOG1032 Uncharacterized conser 99.9 6.8E-26 1.5E-30 266.0 6.6 579 443-1022 4-589 (590)
3 cd04016 C2_Tollip C2 domain pr 99.9 8.1E-22 1.8E-26 187.0 15.3 118 536-656 2-121 (121)
4 KOG1028 Ca2+-dependent phospho 99.9 2.1E-21 4.5E-26 222.8 17.3 167 3-181 166-343 (421)
5 COG5038 Ca2+-dependent lipid-b 99.9 2E-19 4.2E-24 214.7 30.1 122 534-656 1038-1160(1227)
6 cd08682 C2_Rab11-FIP_classI C2 99.8 2.3E-20 5E-25 180.4 14.2 116 538-654 1-125 (126)
7 cd04042 C2A_MCTP_PRT C2 domain 99.8 1.3E-19 2.9E-24 173.8 15.8 119 537-657 1-120 (121)
8 cd08376 C2B_MCTP_PRT C2 domain 99.8 1.5E-19 3.2E-24 172.3 15.7 115 537-657 1-115 (116)
9 cd08379 C2D_MCTP_PRT_plant C2 99.8 1E-19 2.2E-24 173.8 14.2 114 537-652 1-125 (126)
10 cd04019 C2C_MCTP_PRT_plant C2 99.8 1.2E-19 2.6E-24 179.7 15.1 125 537-662 1-137 (150)
11 KOG1326 Membrane-associated pr 99.8 6.4E-22 1.4E-26 231.0 -2.3 465 4-625 206-703 (1105)
12 cd04022 C2A_MCTP_PRT_plant C2 99.8 2.1E-19 4.6E-24 174.0 13.5 120 537-657 1-126 (127)
13 cd08681 C2_fungal_Inn1p-like C 99.8 2.5E-19 5.5E-24 171.2 12.6 117 536-656 1-118 (118)
14 cd04036 C2_cPLA2 C2 domain pre 99.8 4.6E-19 9.9E-24 169.6 13.8 115 537-657 1-118 (119)
15 cd08401 C2A_RasA2_RasA3 C2 dom 99.8 7.6E-19 1.7E-23 168.0 14.3 116 538-655 2-120 (121)
16 cd04016 C2_Tollip C2 domain pr 99.8 9.7E-19 2.1E-23 166.0 14.8 113 4-129 2-121 (121)
17 KOG1030 Predicted Ca2+-depende 99.8 2.8E-19 6.1E-24 172.3 11.1 98 534-633 4-101 (168)
18 cd08395 C2C_Munc13 C2 domain t 99.8 5.2E-19 1.1E-23 167.4 12.6 104 537-642 1-114 (120)
19 cd04024 C2A_Synaptotagmin-like 99.8 1.1E-18 2.4E-23 169.3 14.7 119 536-655 1-127 (128)
20 cd08375 C2_Intersectin C2 doma 99.8 1.4E-18 3.1E-23 169.4 14.9 118 534-656 13-135 (136)
21 cd08391 C2A_C2C_Synaptotagmin_ 99.8 1.6E-18 3.6E-23 166.4 14.3 114 536-655 1-120 (121)
22 cd08378 C2B_MCTP_PRT_plant C2 99.8 1.9E-18 4.2E-23 165.3 13.4 113 538-656 2-119 (121)
23 cd04025 C2B_RasA1_RasA4 C2 dom 99.8 3.5E-18 7.7E-23 164.5 14.3 117 537-654 1-122 (123)
24 cd04054 C2A_Rasal1_RasA4 C2 do 99.8 6.8E-18 1.5E-22 161.8 14.5 116 538-655 2-120 (121)
25 cd08678 C2_C21orf25-like C2 do 99.8 6.5E-18 1.4E-22 163.3 14.5 117 538-658 1-121 (126)
26 cd08381 C2B_PI3K_class_II C2 d 99.8 3.6E-18 7.9E-23 163.6 11.8 102 535-638 12-121 (122)
27 cd08400 C2_Ras_p21A1 C2 domain 99.8 1.3E-17 2.9E-22 160.8 15.6 117 536-657 4-123 (126)
28 cd04043 C2_Munc13_fungal C2 do 99.8 1.2E-17 2.5E-22 161.7 14.7 119 536-661 1-125 (126)
29 cd04010 C2B_RasA3 C2 domain se 99.8 5.6E-18 1.2E-22 166.8 12.0 102 537-641 1-123 (148)
30 cd08682 C2_Rab11-FIP_classI C2 99.8 8.8E-18 1.9E-22 162.4 13.2 115 6-128 1-126 (126)
31 cd08377 C2C_MCTP_PRT C2 domain 99.7 2E-17 4.4E-22 158.3 15.4 117 536-656 1-118 (119)
32 cd04015 C2_plant_PLD C2 domain 99.7 2.1E-17 4.6E-22 165.5 16.0 119 535-656 6-157 (158)
33 cd04014 C2_PKC_epsilon C2 doma 99.7 2.3E-17 4.9E-22 160.9 15.5 115 535-658 3-130 (132)
34 cd04033 C2_NEDD4_NEDD4L C2 dom 99.7 1.4E-17 3.1E-22 162.7 14.0 118 537-656 1-132 (133)
35 cd04019 C2C_MCTP_PRT_plant C2 99.7 2.3E-17 5E-22 163.4 15.2 127 5-136 1-138 (150)
36 cd04028 C2B_RIM1alpha C2 domai 99.7 1.5E-17 3.2E-22 162.7 13.2 106 535-642 28-140 (146)
37 cd04050 C2B_Synaptotagmin-like 99.7 1.4E-17 3.1E-22 155.4 12.0 101 537-641 1-103 (105)
38 cd08378 C2B_MCTP_PRT_plant C2 99.7 2.4E-17 5.1E-22 157.8 13.7 114 6-129 2-119 (121)
39 cd08677 C2A_Synaptotagmin-13 C 99.7 1E-17 2.2E-22 156.3 10.7 101 534-638 12-118 (118)
40 cd04027 C2B_Munc13 C2 domain s 99.7 4.1E-17 8.9E-22 157.8 14.3 115 537-654 2-127 (127)
41 cd04022 C2A_MCTP_PRT_plant C2 99.7 4.9E-17 1.1E-21 157.4 14.1 116 5-130 1-126 (127)
42 cd04017 C2D_Ferlin C2 domain f 99.7 6.2E-17 1.3E-21 158.3 14.9 119 536-657 1-132 (135)
43 cd04029 C2A_SLP-4_5 C2 domain 99.7 2.8E-17 6E-22 158.2 11.6 105 534-639 13-125 (125)
44 cd04046 C2_Calpain C2 domain p 99.7 1.3E-16 2.7E-21 154.2 16.0 118 535-657 2-122 (126)
45 cd08688 C2_KIAA0528-like C2 do 99.7 3.3E-17 7.2E-22 154.3 11.5 102 538-640 1-109 (110)
46 cd08393 C2A_SLP-1_2 C2 domain 99.7 2.8E-17 6.1E-22 158.4 11.3 104 535-639 14-125 (125)
47 cd08394 C2A_Munc13 C2 domain f 99.7 6.4E-17 1.4E-21 152.3 13.2 98 536-640 2-101 (127)
48 cd08373 C2A_Ferlin C2 domain f 99.7 8.6E-17 1.9E-21 155.8 14.7 117 542-661 2-120 (127)
49 cd08387 C2A_Synaptotagmin-8 C2 99.7 4.7E-17 1E-21 157.0 11.8 105 534-639 14-123 (124)
50 cd04041 C2A_fungal C2 domain f 99.7 3.5E-17 7.5E-22 154.4 10.6 101 536-640 1-108 (111)
51 cd08400 C2_Ras_p21A1 C2 domain 99.7 1.8E-16 3.8E-21 153.1 15.6 117 4-131 4-124 (126)
52 cd08677 C2A_Synaptotagmin-13 C 99.7 4E-17 8.6E-22 152.3 10.6 98 2-107 12-118 (118)
53 cd04039 C2_PSD C2 domain prese 99.7 6.8E-17 1.5E-21 151.0 12.0 94 536-630 1-99 (108)
54 cd08379 C2D_MCTP_PRT_plant C2 99.7 1.3E-16 2.8E-21 152.5 13.7 112 5-125 1-125 (126)
55 cd08385 C2A_Synaptotagmin-1-5- 99.7 9E-17 2E-21 155.0 12.8 105 534-639 14-123 (124)
56 cd08681 C2_fungal_Inn1p-like C 99.7 9.4E-17 2E-21 153.4 12.5 111 4-129 1-118 (118)
57 cd04042 C2A_MCTP_PRT C2 domain 99.7 1.7E-16 3.8E-21 152.2 14.2 114 5-131 1-121 (121)
58 cd08392 C2A_SLP-3 C2 domain fi 99.7 8.9E-17 1.9E-21 155.0 11.8 105 534-639 13-128 (128)
59 cd08382 C2_Smurf-like C2 domai 99.7 1.3E-16 2.8E-21 153.4 12.8 114 538-654 2-122 (123)
60 cd04024 C2A_Synaptotagmin-like 99.7 2.1E-16 4.5E-21 153.4 14.1 120 4-129 1-128 (128)
61 cd08375 C2_Intersectin C2 doma 99.7 2.1E-16 4.5E-21 154.3 13.9 114 3-129 14-135 (136)
62 cd08401 C2A_RasA2_RasA3 C2 dom 99.7 2.5E-16 5.5E-21 150.6 13.8 112 6-129 2-121 (121)
63 cd04031 C2A_RIM1alpha C2 domai 99.7 1.4E-16 3E-21 153.9 12.1 104 534-639 14-125 (125)
64 cd08685 C2_RGS-like C2 domain 99.7 1.1E-16 2.4E-21 152.5 10.8 102 535-638 11-119 (119)
65 cd08388 C2A_Synaptotagmin-4-11 99.7 1.9E-16 4.1E-21 153.1 12.4 106 534-640 14-128 (128)
66 cd08386 C2A_Synaptotagmin-7 C2 99.7 2.4E-16 5.1E-21 152.3 12.7 106 534-640 14-125 (125)
67 cd08376 C2B_MCTP_PRT C2 domain 99.7 4.9E-16 1.1E-20 148.0 14.6 109 5-130 1-115 (116)
68 cd04018 C2C_Ferlin C2 domain t 99.7 2.6E-16 5.6E-21 155.2 12.3 102 538-640 2-125 (151)
69 cd04017 C2D_Ferlin C2 domain f 99.7 7.9E-16 1.7E-20 150.5 15.3 117 5-132 2-134 (135)
70 cd08395 C2C_Munc13 C2 domain t 99.7 2.9E-16 6.2E-21 148.8 11.7 99 5-111 1-114 (120)
71 cd04044 C2A_Tricalbin-like C2 99.7 5.1E-16 1.1E-20 149.8 13.7 118 536-657 2-123 (124)
72 cd04030 C2C_KIAA1228 C2 domain 99.7 3.6E-16 7.8E-21 151.5 12.6 105 534-639 14-127 (127)
73 KOG0696 Serine/threonine prote 99.7 6.8E-17 1.5E-21 173.4 7.3 123 516-640 153-288 (683)
74 cd04040 C2D_Tricalbin-like C2 99.7 5.6E-16 1.2E-20 147.4 12.9 113 538-652 1-114 (115)
75 cd04033 C2_NEDD4_NEDD4L C2 dom 99.7 7.5E-16 1.6E-20 150.5 14.1 116 5-129 1-132 (133)
76 cd04011 C2B_Ferlin C2 domain s 99.7 3.7E-16 8E-21 147.5 11.5 101 535-640 3-110 (111)
77 cd08680 C2_Kibra C2 domain fou 99.7 3.6E-16 7.7E-21 149.5 11.1 104 534-638 12-124 (124)
78 cd04025 C2B_RasA1_RasA4 C2 dom 99.7 9E-16 2E-20 147.8 13.8 115 5-127 1-122 (123)
79 cd08389 C2A_Synaptotagmin-14_1 99.7 5.3E-16 1.1E-20 149.2 12.1 105 534-640 14-124 (124)
80 cd08678 C2_C21orf25-like C2 do 99.7 1.1E-15 2.3E-20 147.8 14.3 117 6-133 1-123 (126)
81 cd04051 C2_SRC2_like C2 domain 99.7 3.3E-16 7.1E-21 151.3 10.6 114 537-652 1-125 (125)
82 cd04049 C2_putative_Elicitor-r 99.7 5.8E-16 1.2E-20 149.3 12.3 105 536-641 1-109 (124)
83 cd08394 C2A_Munc13 C2 domain f 99.7 1E-15 2.2E-20 144.2 13.2 96 4-108 2-100 (127)
84 cd08690 C2_Freud-1 C2 domain f 99.7 1.7E-15 3.6E-20 149.3 15.1 120 537-658 5-138 (155)
85 cd08390 C2A_Synaptotagmin-15-1 99.7 7.5E-16 1.6E-20 148.4 12.5 106 534-640 12-123 (123)
86 cd08521 C2A_SLP C2 domain firs 99.7 5E-16 1.1E-20 149.6 11.2 104 534-638 12-123 (123)
87 cd08377 C2C_MCTP_PRT C2 domain 99.7 1.7E-15 3.8E-20 144.9 14.8 112 4-129 1-118 (119)
88 cd04036 C2_cPLA2 C2 domain pre 99.7 9E-16 2E-20 146.8 12.7 108 6-130 2-118 (119)
89 cd04010 C2B_RasA3 C2 domain se 99.7 7.8E-16 1.7E-20 151.6 12.4 98 5-109 1-122 (148)
90 cd04020 C2B_SLP_1-2-3-4 C2 dom 99.6 6.9E-16 1.5E-20 155.1 11.9 106 534-640 25-138 (162)
91 cd08381 C2B_PI3K_class_II C2 d 99.6 8.6E-16 1.9E-20 147.2 11.8 97 3-107 12-121 (122)
92 cd04045 C2C_Tricalbin-like C2 99.6 1.2E-15 2.5E-20 145.8 12.7 102 536-640 1-103 (120)
93 cd08392 C2A_SLP-3 C2 domain fi 99.6 9.2E-16 2E-20 147.9 12.1 101 3-108 14-128 (128)
94 cd04038 C2_ArfGAP C2 domain pr 99.6 9.2E-16 2E-20 150.7 12.1 93 536-631 2-94 (145)
95 cd08391 C2A_C2C_Synaptotagmin_ 99.6 1.7E-15 3.7E-20 145.4 13.7 109 4-129 1-121 (121)
96 cd08675 C2B_RasGAP C2 domain s 99.6 9E-16 1.9E-20 150.1 11.6 103 538-642 1-122 (137)
97 KOG1030 Predicted Ca2+-depende 99.6 7.8E-16 1.7E-20 148.6 10.5 89 1-95 3-97 (168)
98 cd04028 C2B_RIM1alpha C2 domai 99.6 1.6E-15 3.5E-20 148.4 12.4 98 3-109 28-138 (146)
99 cd08676 C2A_Munc13-like C2 dom 99.6 1.2E-15 2.6E-20 150.7 11.5 99 534-638 26-153 (153)
100 cd04032 C2_Perforin C2 domain 99.6 1.4E-15 3E-20 145.7 11.1 93 533-627 25-118 (127)
101 cd04046 C2_Calpain C2 domain p 99.6 7.3E-15 1.6E-19 141.9 15.9 116 3-131 2-123 (126)
102 cd04029 C2A_SLP-4_5 C2 domain 99.6 2.3E-15 5.1E-20 144.9 11.9 99 2-108 13-125 (125)
103 cd04027 C2B_Munc13 C2 domain s 99.6 4.2E-15 9.1E-20 143.8 13.6 115 4-127 1-127 (127)
104 cd08393 C2A_SLP-1_2 C2 domain 99.6 2E-15 4.3E-20 145.5 11.0 98 3-108 14-125 (125)
105 cd04013 C2_SynGAP_like C2 doma 99.6 6.7E-15 1.5E-19 143.5 14.6 116 537-658 12-140 (146)
106 cd04054 C2A_Rasal1_RasA4 C2 do 99.6 7.8E-15 1.7E-19 140.6 14.3 112 6-128 2-120 (121)
107 cd04014 C2_PKC_epsilon C2 doma 99.6 1.1E-14 2.4E-19 142.0 15.5 113 1-131 1-130 (132)
108 cd08691 C2_NEDL1-like C2 domai 99.6 9.5E-15 2E-19 142.0 14.5 114 537-654 2-136 (137)
109 cd04015 C2_plant_PLD C2 domain 99.6 1.1E-14 2.3E-19 146.0 15.2 116 3-130 6-158 (158)
110 cd04050 C2B_Synaptotagmin-like 99.6 4E-15 8.7E-20 138.9 11.2 95 5-108 1-101 (105)
111 cd04037 C2E_Ferlin C2 domain f 99.6 3.2E-15 7E-20 143.8 10.9 91 537-628 1-93 (124)
112 cd08688 C2_KIAA0528-like C2 do 99.6 3.8E-15 8.3E-20 140.2 11.1 98 6-108 1-108 (110)
113 cd08680 C2_Kibra C2 domain fou 99.6 3.3E-15 7.2E-20 142.8 10.7 98 3-107 13-124 (124)
114 cd04021 C2_E3_ubiquitin_ligase 99.6 8.1E-15 1.7E-19 141.3 13.5 114 537-654 3-124 (125)
115 cd04011 C2B_Ferlin C2 domain s 99.6 5.1E-15 1.1E-19 139.7 11.7 100 5-109 5-110 (111)
116 cd08382 C2_Smurf-like C2 domai 99.6 8.7E-15 1.9E-19 140.7 13.1 113 5-127 1-122 (123)
117 cd08373 C2A_Ferlin C2 domain f 99.6 1.2E-14 2.7E-19 140.6 14.1 113 10-134 2-120 (127)
118 cd08383 C2A_RasGAP C2 domain ( 99.6 9.9E-15 2.2E-19 139.2 13.1 112 538-656 2-117 (117)
119 cd08384 C2B_Rabphilin_Doc2 C2 99.6 1.8E-15 3.8E-20 147.9 8.0 104 534-640 11-121 (133)
120 cd04043 C2_Munc13_fungal C2 do 99.6 1.6E-14 3.5E-19 139.7 14.5 112 5-131 2-122 (126)
121 cd04052 C2B_Tricalbin-like C2 99.6 7.6E-15 1.7E-19 138.4 11.8 100 553-658 9-110 (111)
122 cd04044 C2A_Tricalbin-like C2 99.6 1.3E-14 2.8E-19 139.9 12.7 114 4-131 2-124 (124)
123 cd08404 C2B_Synaptotagmin-4 C2 99.6 3.1E-15 6.7E-20 146.6 8.2 105 534-641 13-124 (136)
124 cd04026 C2_PKC_alpha_gamma C2 99.6 1.1E-14 2.3E-19 141.9 11.8 104 535-640 12-121 (131)
125 cd08685 C2_RGS-like C2 domain 99.6 8.1E-15 1.7E-19 139.7 10.5 99 2-107 10-119 (119)
126 cd04013 C2_SynGAP_like C2 doma 99.6 4.1E-14 8.9E-19 138.0 15.5 125 3-132 10-141 (146)
127 cd08406 C2B_Synaptotagmin-12 C 99.6 5.3E-15 1.2E-19 143.9 9.0 103 535-640 14-123 (136)
128 cd04039 C2_PSD C2 domain prese 99.6 1.7E-14 3.8E-19 134.8 11.8 87 4-95 1-98 (108)
129 cd08407 C2B_Synaptotagmin-13 C 99.6 1.2E-14 2.7E-19 141.2 10.9 103 534-639 13-124 (138)
130 cd04009 C2B_Munc13-like C2 dom 99.6 1.4E-14 3E-19 141.4 11.2 93 535-628 15-118 (133)
131 cd00275 C2_PLC_like C2 domain 99.6 3.6E-14 7.9E-19 137.6 14.0 115 537-656 3-127 (128)
132 cd04018 C2C_Ferlin C2 domain t 99.6 2E-14 4.4E-19 141.8 12.2 99 5-108 1-124 (151)
133 cd04048 C2A_Copine C2 domain f 99.6 1.2E-14 2.7E-19 139.1 10.1 99 541-639 5-113 (120)
134 cd08388 C2A_Synaptotagmin-4-11 99.6 2.7E-14 5.8E-19 138.1 12.1 100 3-108 15-127 (128)
135 cd08387 C2A_Synaptotagmin-8 C2 99.6 2.5E-14 5.5E-19 137.9 11.8 98 3-108 15-123 (124)
136 cd08385 C2A_Synaptotagmin-1-5- 99.5 3.4E-14 7.5E-19 137.0 12.5 99 2-108 14-123 (124)
137 cd08405 C2B_Synaptotagmin-7 C2 99.5 8.8E-15 1.9E-19 143.5 7.9 105 534-641 13-124 (136)
138 cd04031 C2A_RIM1alpha C2 domai 99.5 3.4E-14 7.4E-19 137.2 11.6 98 2-108 14-125 (125)
139 cd04030 C2C_KIAA1228 C2 domain 99.5 4.7E-14 1E-18 136.6 12.6 100 3-108 15-127 (127)
140 cd08402 C2B_Synaptotagmin-1 C2 99.5 8.1E-15 1.8E-19 143.7 7.3 104 534-640 13-123 (136)
141 cd08389 C2A_Synaptotagmin-14_1 99.5 3.7E-14 8E-19 136.4 11.6 97 3-108 15-123 (124)
142 cd08686 C2_ABR C2 domain in th 99.5 1.1E-13 2.3E-18 128.9 13.2 94 538-639 1-108 (118)
143 cd04041 C2A_fungal C2 domain f 99.5 3.1E-14 6.7E-19 134.3 9.9 94 4-108 1-107 (111)
144 cd08410 C2B_Synaptotagmin-17 C 99.5 1.2E-14 2.6E-19 142.1 7.3 106 534-641 12-124 (135)
145 cd04051 C2_SRC2_like C2 domain 99.5 3.8E-14 8.3E-19 136.8 10.5 111 5-125 1-125 (125)
146 PLN03008 Phospholipase D delta 99.5 5.7E-14 1.2E-18 166.7 13.9 103 555-660 75-180 (868)
147 cd08403 C2B_Synaptotagmin-3-5- 99.5 1.7E-14 3.7E-19 141.0 7.1 104 534-640 12-122 (134)
148 cd08406 C2B_Synaptotagmin-12 C 99.5 7.3E-14 1.6E-18 135.9 11.3 84 3-91 14-110 (136)
149 cd08692 C2B_Tac2-N C2 domain s 99.5 5.6E-14 1.2E-18 134.5 10.0 104 533-638 11-121 (135)
150 cd00276 C2B_Synaptotagmin C2 d 99.5 2.6E-14 5.7E-19 139.8 7.9 105 534-641 12-123 (134)
151 cd08521 C2A_SLP C2 domain firs 99.5 9.7E-14 2.1E-18 133.6 11.7 98 2-107 12-123 (123)
152 cd04035 C2A_Rabphilin_Doc2 C2 99.5 8.1E-14 1.8E-18 134.1 11.2 103 534-638 13-123 (123)
153 cd08691 C2_NEDL1-like C2 domai 99.5 2.1E-13 4.7E-18 132.5 14.0 115 6-127 3-136 (137)
154 cd08675 C2B_RasGAP C2 domain s 99.5 8.8E-14 1.9E-18 136.0 11.3 97 6-110 1-121 (137)
155 cd08407 C2B_Synaptotagmin-13 C 99.5 8.9E-14 1.9E-18 135.2 11.1 85 2-91 13-112 (138)
156 cd08386 C2A_Synaptotagmin-7 C2 99.5 1.4E-13 3.1E-18 132.9 12.1 98 3-108 15-124 (125)
157 PLN03200 cellulose synthase-in 99.5 6.3E-14 1.4E-18 181.3 12.0 121 533-657 1977-2100(2102)
158 cd08383 C2A_RasGAP C2 domain ( 99.5 2.3E-13 4.9E-18 129.8 13.0 110 6-129 2-117 (117)
159 cd08408 C2B_Synaptotagmin-14_1 99.5 3.2E-14 6.9E-19 139.2 7.0 105 534-640 13-125 (138)
160 cd04021 C2_E3_ubiquitin_ligase 99.5 4.8E-13 1E-17 128.9 14.2 115 4-127 2-124 (125)
161 cd04052 C2B_Tricalbin-like C2 99.5 2E-13 4.3E-18 128.8 11.2 98 18-131 12-110 (111)
162 cd04032 C2_Perforin C2 domain 99.5 1.4E-13 3.1E-18 131.8 10.3 86 4-94 28-119 (127)
163 cd08409 C2B_Synaptotagmin-15 C 99.5 5.6E-14 1.2E-18 137.6 7.5 104 535-640 14-124 (137)
164 cd08690 C2_Freud-1 C2 domain f 99.5 5.9E-13 1.3E-17 131.3 14.7 115 6-132 4-139 (155)
165 KOG1011 Neurotransmitter relea 99.5 5.8E-14 1.3E-18 156.5 8.2 123 534-659 293-428 (1283)
166 cd08692 C2B_Tac2-N C2 domain s 99.5 2.5E-13 5.4E-18 130.0 11.2 86 2-92 12-110 (135)
167 cd04020 C2B_SLP_1-2-3-4 C2 dom 99.5 2.5E-13 5.4E-18 136.6 11.5 99 2-108 25-137 (162)
168 cd08390 C2A_Synaptotagmin-15-1 99.5 3.8E-13 8.2E-18 129.5 12.2 98 3-108 13-122 (123)
169 cd04049 C2_putative_Elicitor-r 99.5 3.7E-13 8E-18 129.8 12.1 97 4-108 1-107 (124)
170 cd04038 C2_ArfGAP C2 domain pr 99.5 3.4E-13 7.4E-18 132.6 11.5 86 4-95 2-92 (145)
171 cd04040 C2D_Tricalbin-like C2 99.5 4.2E-13 9.1E-18 127.5 11.6 107 6-125 1-114 (115)
172 cd08408 C2B_Synaptotagmin-14_1 99.5 3.7E-13 7.9E-18 131.7 11.3 97 3-108 14-124 (138)
173 KOG1028 Ca2+-dependent phospho 99.4 4.2E-13 9.2E-18 154.5 13.2 125 536-661 167-298 (421)
174 PF02893 GRAM: GRAM domain; I 99.4 7.2E-14 1.6E-18 119.5 5.1 67 689-755 1-69 (69)
175 cd04047 C2B_Copine C2 domain s 99.4 6.4E-13 1.4E-17 125.2 10.5 88 540-629 4-101 (110)
176 cd08384 C2B_Rabphilin_Doc2 C2 99.4 6.7E-13 1.5E-17 129.6 11.0 96 3-108 12-120 (133)
177 cd08402 C2B_Synaptotagmin-1 C2 99.4 7.7E-13 1.7E-17 129.7 11.4 97 2-108 13-122 (136)
178 cd04045 C2C_Tricalbin-like C2 99.4 1.6E-12 3.5E-17 124.2 13.2 96 4-109 1-103 (120)
179 cd04009 C2B_Munc13-like C2 dom 99.4 7.3E-13 1.6E-17 129.2 10.6 90 3-97 15-121 (133)
180 cd08686 C2_ABR C2 domain in th 99.4 1.8E-12 3.8E-17 120.7 12.4 83 6-91 1-92 (118)
181 cd04037 C2E_Ferlin C2 domain f 99.4 7.2E-13 1.6E-17 127.5 10.1 84 6-94 2-93 (124)
182 cd08404 C2B_Synaptotagmin-4 C2 99.4 1.3E-12 2.8E-17 128.1 11.5 96 3-108 14-122 (136)
183 cd08410 C2B_Synaptotagmin-17 C 99.4 1.2E-12 2.7E-17 127.9 11.3 98 2-108 12-122 (135)
184 cd08405 C2B_Synaptotagmin-7 C2 99.4 1.4E-12 3.1E-17 127.8 11.7 86 2-92 13-111 (136)
185 cd04026 C2_PKC_alpha_gamma C2 99.4 1.1E-12 2.4E-17 127.8 10.7 100 3-111 12-123 (131)
186 cd08676 C2A_Munc13-like C2 dom 99.4 1.1E-12 2.4E-17 129.7 10.7 93 2-107 26-153 (153)
187 cd08409 C2B_Synaptotagmin-15 C 99.4 1.9E-12 4E-17 126.9 11.4 86 3-93 14-111 (137)
188 PLN03008 Phospholipase D delta 99.4 2.1E-12 4.6E-17 153.6 13.9 103 19-133 77-180 (868)
189 cd00275 C2_PLC_like C2 domain 99.4 5.4E-12 1.2E-16 122.3 13.9 111 4-129 2-127 (128)
190 cd08403 C2B_Synaptotagmin-3-5- 99.4 2.6E-12 5.6E-17 125.6 11.5 97 2-108 12-121 (134)
191 PF00168 C2: C2 domain; Inter 99.4 2.4E-12 5.2E-17 114.7 9.9 82 538-620 1-85 (85)
192 KOG2059 Ras GTPase-activating 99.4 1.6E-12 3.4E-17 148.4 10.7 162 3-181 4-174 (800)
193 KOG0696 Serine/threonine prote 99.4 2.4E-13 5.1E-18 146.5 3.1 97 3-108 179-287 (683)
194 cd04048 C2A_Copine C2 domain f 99.3 3E-12 6.4E-17 122.7 9.2 95 10-108 6-113 (120)
195 cd00276 C2B_Synaptotagmin C2 d 99.3 9.8E-12 2.1E-16 121.6 11.4 97 2-108 12-121 (134)
196 smart00568 GRAM domain in gluc 99.3 3.6E-12 7.7E-17 106.1 6.0 58 697-754 2-60 (61)
197 KOG1011 Neurotransmitter relea 99.3 5.2E-12 1.1E-16 141.1 7.2 121 3-132 294-426 (1283)
198 cd04035 C2A_Rabphilin_Doc2 C2 99.3 3E-11 6.6E-16 116.2 11.2 88 2-95 13-114 (123)
199 KOG2059 Ras GTPase-activating 99.2 1.6E-11 3.4E-16 140.4 9.3 119 537-658 6-126 (800)
200 cd00030 C2 C2 domain. The C2 d 99.2 5E-11 1.1E-15 109.0 11.0 100 538-638 1-102 (102)
201 PLN03200 cellulose synthase-in 99.2 2.5E-11 5.4E-16 157.7 10.7 114 3-131 1979-2101(2102)
202 PLN02223 phosphoinositide phos 99.2 1.9E-10 4.1E-15 132.3 14.0 117 536-656 409-536 (537)
203 cd04047 C2B_Copine C2 domain s 99.2 1.1E-10 2.4E-15 109.9 9.6 82 8-95 4-101 (110)
204 PF00168 C2: C2 domain; Inter 99.1 1.7E-10 3.6E-15 102.7 9.3 76 6-86 1-85 (85)
205 smart00239 C2 Protein kinase C 99.1 2.4E-10 5.2E-15 104.8 10.7 94 538-632 2-98 (101)
206 cd08374 C2F_Ferlin C2 domain s 99.1 2.4E-10 5.2E-15 109.6 10.9 93 538-631 2-126 (133)
207 PLN02952 phosphoinositide phos 99.1 7.2E-10 1.6E-14 130.4 14.0 117 536-656 470-598 (599)
208 KOG1013 Synaptic vesicle prote 99.1 4.9E-11 1.1E-15 125.8 3.5 171 3-181 92-278 (362)
209 PLN02270 phospholipase D alpha 99.0 1.8E-09 3.8E-14 129.2 13.7 122 535-659 7-150 (808)
210 KOG1328 Synaptic vesicle prote 99.0 5.3E-11 1.2E-15 135.3 0.8 129 532-661 110-305 (1103)
211 PLN02230 phosphoinositide phos 99.0 1.7E-09 3.7E-14 127.1 12.6 117 536-656 469-597 (598)
212 PLN02223 phosphoinositide phos 99.0 6.3E-09 1.4E-13 119.9 14.3 112 4-129 409-536 (537)
213 KOG0169 Phosphoinositide-speci 98.9 2.7E-09 5.8E-14 124.8 11.0 117 537-657 617-744 (746)
214 cd08374 C2F_Ferlin C2 domain s 98.9 4.2E-09 9E-14 101.1 10.3 86 5-95 1-124 (133)
215 cd00030 C2 C2 domain. The C2 d 98.9 4.5E-09 9.7E-14 95.9 10.1 94 6-107 1-102 (102)
216 PLN02222 phosphoinositide phos 98.9 8.6E-09 1.9E-13 121.1 13.4 117 536-656 452-580 (581)
217 PLN02228 Phosphoinositide phos 98.9 1E-08 2.2E-13 120.1 13.4 120 536-659 431-563 (567)
218 PLN02952 phosphoinositide phos 98.9 1.8E-08 3.9E-13 118.8 14.3 96 3-109 469-581 (599)
219 KOG1031 Predicted Ca2+-depende 98.9 4.1E-09 9E-14 117.1 8.4 131 536-668 3-147 (1169)
220 smart00239 C2 Protein kinase C 98.9 1.3E-08 2.9E-13 93.1 10.0 86 5-95 1-95 (101)
221 cd08689 C2_fungal_Pkc1p C2 dom 98.8 1.1E-08 2.4E-13 91.8 8.4 84 538-628 1-88 (109)
222 PLN02270 phospholipase D alpha 98.8 2.5E-08 5.3E-13 119.6 13.4 119 3-133 7-151 (808)
223 PLN02230 phosphoinositide phos 98.8 4.8E-08 1.1E-12 115.0 13.2 113 3-129 468-597 (598)
224 KOG1328 Synaptic vesicle prote 98.8 2.7E-09 5.8E-14 121.8 2.4 94 534-628 945-1049(1103)
225 PLN02222 phosphoinositide phos 98.7 9.5E-08 2.1E-12 112.4 13.9 113 3-129 451-580 (581)
226 KOG1264 Phospholipase C [Lipid 98.7 4.8E-08 1E-12 113.0 10.7 101 535-640 1064-1171(1267)
227 COG5038 Ca2+-dependent lipid-b 98.7 5.4E-08 1.2E-12 118.2 10.8 94 534-629 434-530 (1227)
228 PLN02228 Phosphoinositide phos 98.7 2E-07 4.3E-12 109.5 14.0 115 4-132 431-563 (567)
229 KOG0169 Phosphoinositide-speci 98.7 9.4E-08 2E-12 112.2 10.9 112 5-130 617-744 (746)
230 cd08689 C2_fungal_Pkc1p C2 dom 98.6 1.6E-07 3.5E-12 84.5 7.9 79 6-95 1-89 (109)
231 KOG1031 Predicted Ca2+-depende 98.6 1.6E-07 3.5E-12 104.7 8.6 118 3-130 2-136 (1169)
232 PLN02352 phospholipase D epsil 98.4 2.2E-06 4.8E-11 103.0 12.6 116 534-659 8-132 (758)
233 KOG1264 Phospholipase C [Lipid 98.4 9.1E-07 2E-11 102.7 8.6 88 3-95 1064-1163(1267)
234 PLN02352 phospholipase D epsil 98.2 1.1E-05 2.4E-10 97.1 12.8 114 2-133 8-133 (758)
235 PLN02964 phosphatidylserine de 98.1 6.2E-06 1.3E-10 98.7 7.4 91 534-632 52-143 (644)
236 KOG0905 Phosphoinositide 3-kin 98.0 3.1E-06 6.7E-11 102.2 4.2 105 535-640 1523-1635(1639)
237 KOG0905 Phosphoinositide 3-kin 98.0 3.1E-06 6.8E-11 102.1 4.1 99 2-108 1522-1634(1639)
238 cd08683 C2_C2cd3 C2 domain fou 97.8 4.3E-05 9.3E-10 71.0 6.2 100 6-107 1-143 (143)
239 KOG1013 Synaptic vesicle prote 97.7 3.6E-05 7.8E-10 82.2 4.9 87 537-624 234-327 (362)
240 KOG4347 GTPase-activating prot 97.5 6.8E-05 1.5E-09 86.9 4.6 105 683-810 5-112 (671)
241 KOG1326 Membrane-associated pr 97.3 9.6E-05 2.1E-09 89.0 2.3 81 5-90 614-702 (1105)
242 cd08683 C2_C2cd3 C2 domain fou 97.2 0.00039 8.6E-09 64.8 4.4 82 557-638 33-143 (143)
243 KOG2060 Rab3 effector RIM1 and 97.2 0.00031 6.7E-09 76.6 3.8 106 535-642 268-381 (405)
244 cd08684 C2A_Tac2-N C2 domain f 97.1 0.00036 7.7E-09 60.3 2.8 82 7-95 2-95 (103)
245 KOG2060 Rab3 effector RIM1 and 97.0 0.0004 8.6E-09 75.7 2.4 101 3-111 268-381 (405)
246 PLN02964 phosphatidylserine de 97.0 0.0012 2.7E-08 79.4 6.8 87 3-95 53-140 (644)
247 KOG3837 Uncharacterized conser 96.8 0.0015 3.3E-08 71.7 5.2 126 537-663 368-509 (523)
248 KOG1327 Copine [Signal transdu 96.7 0.0057 1.2E-07 70.9 9.1 126 31-167 42-167 (529)
249 KOG1327 Copine [Signal transdu 96.6 0.0038 8.1E-08 72.3 6.6 86 541-628 141-236 (529)
250 cd08398 C2_PI3K_class_I_alpha 96.3 0.047 1E-06 54.5 11.6 89 3-93 7-107 (158)
251 PF12416 DUF3668: Cep120 prote 96.1 0.064 1.4E-06 60.1 13.0 121 538-661 2-136 (340)
252 KOG3837 Uncharacterized conser 95.9 0.0063 1.4E-07 67.1 3.9 115 5-131 368-504 (523)
253 PF15627 CEP76-C2: CEP76 C2 do 95.9 0.051 1.1E-06 53.5 9.8 123 536-659 9-152 (156)
254 PF10698 DUF2505: Protein of u 95.9 0.38 8.2E-06 48.4 16.5 147 857-1013 4-158 (159)
255 PF12416 DUF3668: Cep120 prote 95.9 0.11 2.3E-06 58.4 13.4 120 6-132 2-134 (340)
256 KOG1265 Phospholipase C [Lipid 95.3 0.066 1.4E-06 64.5 9.3 83 4-95 703-797 (1189)
257 cd08684 C2A_Tac2-N C2 domain f 95.2 0.019 4.1E-07 50.0 3.4 95 539-637 2-102 (103)
258 KOG1265 Phospholipase C [Lipid 95.1 0.035 7.5E-07 66.7 6.4 112 535-658 702-824 (1189)
259 cd08398 C2_PI3K_class_I_alpha 95.0 0.15 3.2E-06 51.0 9.5 101 537-656 9-121 (158)
260 cd08693 C2_PI3K_class_I_beta_d 94.9 0.14 2.9E-06 52.2 9.4 91 3-93 7-121 (173)
261 PF14470 bPH_3: Bacterial PH d 94.8 0.19 4.1E-06 45.6 9.1 90 697-809 1-92 (96)
262 PF15627 CEP76-C2: CEP76 C2 do 94.6 0.29 6.3E-06 48.3 10.3 121 4-132 9-152 (156)
263 cd08693 C2_PI3K_class_I_beta_d 94.1 0.31 6.8E-06 49.6 9.7 102 537-656 9-135 (173)
264 PF10358 NT-C2: N-terminal C2 94.0 1.3 2.7E-05 43.5 13.7 119 536-661 7-139 (143)
265 cd08380 C2_PI3K_like C2 domain 93.9 0.45 9.7E-06 47.6 10.4 106 537-659 9-125 (156)
266 cd08687 C2_PKN-like C2 domain 93.5 0.71 1.5E-05 40.8 9.2 84 556-656 8-92 (98)
267 cd08397 C2_PI3K_class_III C2 d 93.4 0.53 1.2E-05 47.2 9.8 91 555-661 28-127 (159)
268 cd08380 C2_PI3K_like C2 domain 93.3 0.4 8.6E-06 48.0 8.9 88 3-93 7-108 (156)
269 cd08687 C2_PKN-like C2 domain 92.8 1.1 2.4E-05 39.7 9.4 83 19-129 9-92 (98)
270 cd08397 C2_PI3K_class_III C2 d 92.4 0.47 1E-05 47.5 7.8 70 18-92 29-107 (159)
271 cd04012 C2A_PI3K_class_II C2 d 92.1 0.74 1.6E-05 46.8 9.0 89 536-625 8-118 (171)
272 cd04012 C2A_PI3K_class_II C2 d 91.8 0.85 1.9E-05 46.4 9.1 92 2-93 6-120 (171)
273 PF14844 PH_BEACH: PH domain a 91.7 0.11 2.5E-06 48.2 2.3 66 703-771 2-83 (106)
274 KOG1452 Predicted Rho GTPase-a 89.1 0.84 1.8E-05 49.0 6.3 115 533-656 48-166 (442)
275 PF00792 PI3K_C2: Phosphoinosi 88.8 3.5 7.7E-05 40.5 10.3 75 571-661 23-105 (142)
276 cd08399 C2_PI3K_class_I_gamma 88.4 3.6 7.9E-05 41.9 10.2 70 537-607 11-88 (178)
277 KOG1452 Predicted Rho GTPase-a 88.2 0.87 1.9E-05 48.9 5.7 109 2-131 49-168 (442)
278 cd08399 C2_PI3K_class_I_gamma 88.1 2.7 5.9E-05 42.8 9.0 67 3-69 9-88 (178)
279 cd05018 CoxG Carbon monoxide d 87.8 27 0.00058 33.6 16.0 137 858-1014 7-143 (144)
280 PF00792 PI3K_C2: Phosphoinosi 87.2 3 6.5E-05 41.0 8.6 56 33-93 23-86 (142)
281 PF10358 NT-C2: N-terminal C2 86.5 15 0.00033 35.8 13.3 116 5-132 8-137 (143)
282 PF10698 DUF2505: Protein of u 84.3 47 0.001 33.2 16.1 148 256-419 4-159 (159)
283 smart00142 PI3K_C2 Phosphoinos 83.4 5 0.00011 36.8 7.6 65 5-69 12-91 (100)
284 smart00142 PI3K_C2 Phosphoinos 82.7 6.5 0.00014 36.1 8.0 71 538-608 13-92 (100)
285 PF14429 DOCK-C2: C2 domain in 82.2 6.2 0.00013 40.6 8.7 58 568-625 59-120 (184)
286 cd08876 START_1 Uncharacterize 82.0 42 0.00092 34.6 15.0 142 857-1013 46-193 (195)
287 PF14429 DOCK-C2: C2 domain in 80.7 5.1 0.00011 41.3 7.4 58 32-91 61-120 (184)
288 cd08694 C2_Dock-A C2 domains f 76.4 16 0.00035 37.7 9.2 57 568-624 53-114 (196)
289 PF11605 Vps36_ESCRT-II: Vacuo 75.9 5.1 0.00011 35.9 4.9 51 718-770 37-87 (89)
290 cd08695 C2_Dock-B C2 domains f 75.6 10 0.00022 39.0 7.6 39 31-69 54-94 (189)
291 cd08694 C2_Dock-A C2 domains f 75.4 11 0.00023 38.9 7.7 39 31-69 54-94 (196)
292 PTZ00447 apical membrane antig 73.9 37 0.00081 37.4 11.5 111 6-131 60-174 (508)
293 KOG1329 Phospholipase D1 [Lipi 73.1 5.2 0.00011 49.6 5.6 99 557-657 138-240 (887)
294 PF15625 CC2D2AN-C2: CC2D2A N- 72.1 64 0.0014 32.7 12.4 84 18-108 36-123 (168)
295 KOG0694 Serine/threonine prote 69.8 1.6 3.4E-05 52.5 0.2 97 556-661 27-125 (694)
296 cd07821 PYR_PYL_RCAR_like Pyra 69.0 1E+02 0.0023 29.0 13.6 104 857-981 6-111 (140)
297 cd07823 SRPBCC_5 Ligand-bindin 67.9 1.2E+02 0.0027 29.4 14.8 137 858-1014 5-144 (146)
298 PF00407 Bet_v_1: Pathogenesis 66.7 1.2E+02 0.0027 30.0 13.0 139 857-1017 9-151 (151)
299 cd08868 START_STARD1_3_like Ch 65.6 86 0.0019 32.8 12.4 144 857-1010 53-205 (208)
300 cd08695 C2_Dock-B C2 domains f 65.6 14 0.00029 38.1 5.9 55 569-624 54-112 (189)
301 cd08904 START_STARD6-like Lipi 65.5 1.7E+02 0.0038 30.6 14.3 78 931-1009 120-202 (204)
302 cd08679 C2_DOCK180_related C2 62.3 14 0.00031 37.7 5.6 58 34-91 56-115 (178)
303 cd08871 START_STARD10-like Lip 60.1 2.3E+02 0.005 29.9 15.1 148 859-1017 54-207 (222)
304 PF08567 TFIIH_BTF_p62_N: TFII 57.2 30 0.00064 30.3 5.8 39 718-756 13-53 (79)
305 cd08679 C2_DOCK180_related C2 56.8 28 0.0006 35.6 6.5 56 569-625 54-115 (178)
306 cd08696 C2_Dock-C C2 domains f 56.3 27 0.00058 35.7 6.2 39 31-69 55-95 (179)
307 PRK10724 hypothetical protein; 55.7 1.5E+02 0.0032 29.7 11.3 131 857-1014 20-151 (158)
308 cd01201 Neurobeachin Neurobeac 55.1 23 0.0005 32.8 4.9 89 702-811 2-105 (108)
309 cd08696 C2_Dock-C C2 domains f 55.0 31 0.00067 35.3 6.4 57 568-625 54-118 (179)
310 PF15625 CC2D2AN-C2: CC2D2A N- 54.7 47 0.001 33.6 7.7 67 558-627 38-107 (168)
311 cd08905 START_STARD1-like Chol 54.5 2.3E+02 0.005 29.7 13.2 78 932-1010 125-206 (209)
312 PF06115 DUF956: Domain of unk 50.9 23 0.0005 33.1 4.2 39 714-753 20-58 (118)
313 PTZ00447 apical membrane antig 50.8 1.3E+02 0.0029 33.3 10.5 109 537-655 59-171 (508)
314 cd08870 START_STARD2_7-like Li 48.4 3.4E+02 0.0074 28.3 15.0 148 858-1012 56-208 (209)
315 cd08861 OtcD1_ARO-CYC_like N-t 48.1 2.3E+02 0.005 27.0 11.4 34 951-986 82-115 (142)
316 smart00683 DM16 Repeats in sea 48.0 37 0.0008 27.4 4.4 34 718-752 20-53 (55)
317 cd08697 C2_Dock-D C2 domains f 47.7 48 0.001 34.1 6.4 39 31-69 57-97 (185)
318 cd08697 C2_Dock-D C2 domains f 46.9 67 0.0014 33.1 7.3 40 568-607 56-97 (185)
319 PF11696 DUF3292: Protein of u 45.7 63 0.0014 39.3 7.8 98 706-811 520-634 (642)
320 PF04707 PRELI: PRELI-like fam 45.1 1.7E+02 0.0038 29.1 10.0 71 945-1015 81-152 (157)
321 KOG0694 Serine/threonine prote 43.6 7.2 0.00016 47.1 -0.2 96 18-132 27-123 (694)
322 PF11618 DUF3250: Protein of u 42.4 76 0.0017 29.5 6.3 93 560-656 2-104 (107)
323 KOG2419 Phosphatidylserine dec 40.0 6.9 0.00015 46.2 -1.1 57 556-614 304-361 (975)
324 cd00177 START Lipid-binding ST 39.4 4.1E+02 0.0088 26.6 13.6 51 932-984 113-167 (193)
325 cd07826 SRPBCC_CalC_Aha1-like_ 37.0 3.9E+02 0.0085 25.7 12.6 137 856-1015 4-141 (142)
326 cd08910 START_STARD2-like Lipi 36.9 5.1E+02 0.011 27.1 13.8 142 857-1012 54-206 (207)
327 PF10604 Polyketide_cyc2: Poly 36.3 3.6E+02 0.0079 25.1 12.9 101 857-981 7-108 (139)
328 PF07162 B9-C2: Ciliary basal 33.5 4.5E+02 0.0099 26.4 11.0 79 6-89 4-101 (168)
329 PF06219 DUF1005: Protein of u 33.0 1.4E+02 0.0031 34.2 7.6 113 18-132 35-169 (460)
330 KOG0904 Phosphatidylinositol 3 32.8 76 0.0016 39.7 5.8 67 3-69 342-422 (1076)
331 PF01060 DUF290: Transthyretin 32.2 1.6E+02 0.0035 25.6 6.5 40 593-642 8-47 (80)
332 cd08869 START_RhoGAP C-termina 30.4 6.3E+02 0.014 26.1 12.3 50 934-986 118-174 (197)
333 COG4687 Uncharacterized protei 30.2 55 0.0012 30.2 3.1 36 717-753 23-58 (122)
334 PF12068 DUF3548: Domain of un 29.7 57 0.0012 34.4 3.7 35 739-776 112-146 (213)
335 KOG4471 Phosphatidylinositol 3 29.0 1.7E+02 0.0037 35.2 7.6 67 691-759 30-97 (717)
336 KOG1329 Phospholipase D1 [Lipi 26.9 87 0.0019 39.4 5.1 103 19-132 138-242 (887)
337 PF10409 PTEN_C2: C2 domain of 26.8 5.6E+02 0.012 24.4 11.0 91 537-627 5-98 (134)
338 smart00234 START in StAR and p 26.7 7E+02 0.015 25.5 14.0 77 933-1012 121-202 (206)
339 PF11618 DUF3250: Protein of u 26.5 2E+02 0.0044 26.7 6.4 95 22-129 2-104 (107)
340 cd08894 SRPBCC_CalC_Aha1-like_ 26.4 5.7E+02 0.012 24.4 11.9 134 856-1014 4-137 (139)
341 KOG0904 Phosphatidylinositol 3 26.1 1.1E+02 0.0024 38.4 5.6 67 537-606 344-421 (1076)
342 PF14909 SPATA6: Spermatogenes 25.4 6.4E+02 0.014 24.7 9.6 84 5-94 3-101 (140)
343 PF07289 DUF1448: Protein of u 25.3 4.5E+02 0.0097 29.7 9.8 103 697-814 19-127 (339)
344 PF01852 START: START domain; 24.8 7.6E+02 0.016 25.2 14.2 80 931-1013 119-203 (206)
345 cd07824 SRPBCC_6 Ligand-bindin 23.3 6.7E+02 0.015 24.1 14.6 127 857-1002 6-138 (146)
346 KOG2761 START domain-containin 23.1 9.1E+02 0.02 25.5 11.8 81 934-1015 131-217 (219)
347 cd08907 START_STARD8-like C-te 22.8 5E+02 0.011 27.2 9.0 54 930-985 123-179 (205)
348 cd08906 START_STARD3-like Chol 22.8 8.9E+02 0.019 25.3 14.5 141 857-1010 54-206 (209)
349 cd05137 RasGAP_CLA2_BUD2 CLA2/ 21.5 1.1E+02 0.0024 35.5 4.5 40 615-655 1-42 (395)
350 KOG4269 Rac GTPase-activating 21.1 38 0.00083 42.1 0.6 65 3-69 758-828 (1112)
351 cd08911 START_STARD7-like Lipi 21.0 9.5E+02 0.021 25.0 15.2 147 858-1012 51-206 (207)
352 cd07818 SRPBCC_1 Ligand-bindin 20.2 7.6E+02 0.017 23.5 13.0 57 953-1013 91-147 (150)
No 1
>KOG1032 consensus Uncharacterized conserved protein, contains GRAM domain [Function unknown]
Probab=99.97 E-value=1.4e-31 Score=313.77 Aligned_cols=290 Identities=20% Similarity=0.298 Sum_probs=214.2
Q ss_pred CCCccccccceeeeeecccccccceeeeecEEEEEeccCCCeEEEEEecccceeeEeccccccccCCCcEEEEEeccCCc
Q 001703 697 LPPEEFLIKDFTCYLKRKMPLQGRLFLSARIVGFYANLFGNKTKFFFLWEDIEDIQILSPSLATVGSPSLVIILWKGRGL 776 (1024)
Q Consensus 697 l~~~e~l~~~~~c~~~~~~~~~G~lyis~~~~cF~s~~~g~~~~~~i~~~di~~i~k~~~~~~~~~~~~i~i~~~~~~~~ 776 (1024)
+|+++.|+.+|+|+++|.+++|||||++..||||||++|||.++.+|||.+|.-|+|+.+ +|+
T Consensus 117 ~~~~~~l~~~~~cal~reillQGrmyis~~~icF~s~i~gw~~~~vIpf~eI~~ikk~~t-----------------ag~ 179 (590)
T KOG1032|consen 117 VPDPEILLTDYSCALQREILLQGRMYISEEHICFNSNIFGWETKVVIPFDEITLIKKTKT-----------------AGI 179 (590)
T ss_pred CCCcceeeeecchhhccccccccccccccceeeecccccCccceeEEeeeeeeeeehhhh-----------------ccC
Confidence 889999999999999999999999999999999999999999999999999999999883 467
Q ss_pred ccCCCccccCCCCceEEEEEeecChhHHHHHHHHHHHh---cCCChhhhhhhhcc-cccc--c----cccCccCC---CC
Q 001703 777 DARHGAKSQDEEGRLRFYFQSFVSFNDASRTIMALWRS---RTLTAYQKEQIAEE-QQVQ--E----EMSTAADR---GS 843 (1024)
Q Consensus 777 ~~~~~~~~~~~~~~~~~~f~sf~~rd~~~~~l~~~~~~---~~~~~~~~~~~~~~-~s~~--~----~~~~~~~~---~~ 843 (1024)
+||++.|++. ..+|+|+||++||.+|.+|..+-+. ...++......... +.+. + .....+.+ .+
T Consensus 180 fpn~i~i~t~---~~ky~f~s~~Srda~~~~~~~~~~~~~~~s~s~~~~~~~l~~~~~~~~~~~~~~~~~~~~~s~~~~s 256 (590)
T KOG1032|consen 180 FPNAIEITTG---TTKYIFVSLLSRDATYKLIKLLLHKFLDSSGSPRADSDYLSSVEPEVNDDQQGNVDNSQSPSALQNS 256 (590)
T ss_pred CCcceEEecC---CCcceeeecccCccHHHHHHHhhhhcccccCCccccchhcccCCCCcCcccccccccCCCccccccc
Confidence 8888888853 3599999999999999977554332 11111111000000 0000 0 00000000 11
Q ss_pred CCCCCC------------ccccccccccccCCHHhHhh-hccCChhHHHHHHHhCCcceeecccccCCCCceEEEEEEEE
Q 001703 844 VPNFED------------AKMSKVYNAELPISVKALME-MFDGGKLEHQVMEKSGCHNYVTTPWDLVKPGVCERHLSYRF 910 (1024)
Q Consensus 844 ~~~~~~------------~~~~~~~~~~~~~~~~~~f~-lf~~~~~~~~~~~~~~~~~i~~~~W~~~~~~~~~R~~sy~~ 910 (1024)
+..+.+ ..+.-+.+..+.+++..+|+ +|++..|...+.+.++..+++..+|.....+...|+++|+.
T Consensus 257 ~~~~~~e~~~~~~~~~~~~~~~v~~~~~~s~~~~~~~~~lf~d~~~~~~~l~~~~~~~vs~~~~~~~~~~~~~r~~~y~~ 336 (590)
T KOG1032|consen 257 FDSPKEEELEHDFSCSLSRLFGVLGRLPFSAPIGAFFSLLFGDNTFFFFFLEDQDEIQVSPIPWKGPRSGILLRTLSYTK 336 (590)
T ss_pred cCCCccccccccccccccccccccccccccccccccceeeccCcceeeeccccccccccccccccCCCccceeEeccCCc
Confidence 111111 01122335678899999999 89999999999999999999999999877789999999995
Q ss_pred --cccccCCCceecEEEEEeecCCCCcEEEEEEEecCCCCCCCceEEEEEEEEEecCCCCCccEEEEEEEEEEecccchh
Q 001703 911 --NRHVSIFGGEVTCTQQKSPLASGEGWIVNEVMSLHDVPFDDHFRVHFRYEIEKSPLAHNACKCAIYIGISWLKSTKFQ 988 (1024)
Q Consensus 911 --n~~~~~~~~~~~~~Q~~~~~~~~~~~vv~~~~~~~dVPygd~F~v~~r~~i~~~~~~~~~c~l~v~~~V~f~Kst~~K 988 (1024)
..++||+.+.+..+|.........++.|...+.+++||||++|.|++||+|+|.. .+.|+++++++|.|.|++|.+
T Consensus 337 ~l~~~~gPk~t~~~~~~~l~~~~~~~~~~vls~t~~~~vps~~~f~v~~~y~i~~~~--~~~~~l~v~~~V~~~~~sw~~ 414 (590)
T KOG1032|consen 337 GLPAKSGPKSTDCEGTQTLHHQDLEKYFRVLSETLTPDVPSGDSFYVKTRYLISRAG--SNSCKLKVSTSVEWTKSSWDV 414 (590)
T ss_pred cCCCcCCCccccccceeeEEeccchhhhhhhheeccCCccccceeeeeEEEEEEecC--CcceeecceeEEEeccCchhh
Confidence 6677777667777775333233333555544444999999999999999999998 599999999999999999998
Q ss_pred hhhhhhhH--HhHHHHHHHHHH
Q 001703 989 QRITQNIT--EKFTHRLKEMIE 1008 (1024)
Q Consensus 989 ~~Ie~~~~--~g~~~~~~~~~~ 1008 (1024)
.+++.++. +.+-+.++.+++
T Consensus 415 ~~~~~~~~~~k~lv~~~~~~~~ 436 (590)
T KOG1032|consen 415 PVSEIGSNTLKDLVEILEKLLE 436 (590)
T ss_pred ccccccccchhhHHHHHHHHHh
Confidence 88888875 333334444443
No 2
>KOG1032 consensus Uncharacterized conserved protein, contains GRAM domain [Function unknown]
Probab=99.92 E-value=6.8e-26 Score=266.00 Aligned_cols=579 Identities=27% Similarity=0.325 Sum_probs=444.3
Q ss_pred cchhhhhcccceeeeeehhhHHHHheeeeeeeCCCccCCccccCCCCCCcceeEEeeeeEEeechhHHHHHHHHHhhccc
Q 001703 443 SDWELASEYFWNFTVVSAGFMILYVVVHILLCEPSKRQGLEFYGLDLPDSFGELISCGILVIQLEQVFNMVGHFVRARLR 522 (1024)
Q Consensus 443 ~~~~~~~~~f~~~~~~~~~~~~l~~~~~i~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 (1024)
+.++...++|.++.++......+++-++.-++.+...++..+.++++|+..+.+.....++....+......++.++...
T Consensus 4 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~q~~~~~~~n~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~k~~ 83 (590)
T KOG1032|consen 4 MQQKSESPKFAKVSVLLSSPLGISVDVAMNVEESAKIQGFPFLGLNLPDVSGSLFSSKVISSDLERSSDRVDSFASAKLH 83 (590)
T ss_pred ccccccccchhhhhcccccccccccceeccccccccccCcccccCCchhhcccccCCccccccccccccccccccccccC
Confidence 34555666777777777666667888888888888889999999999998888877766666655555555556666655
Q ss_pred cCCCCCccccCCCeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCEEEeeecccCCCCCeEeEEEEEEeecCCCCeEEEE
Q 001703 523 KGSDHGVKAQGDGWVLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVE 602 (1024)
Q Consensus 523 ~~~d~~~~~~~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~~~~t~nP~WnE~f~f~~~~~~~~~L~v~ 602 (1024)
++.+.+.+....++...+..+.+.++.....++.++||..+.+.+..+...+...+.+|.|++.++|+-...+-....|.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~n~~~~~~~l~~~~~cal~reillQGrmyis~~~icF~s~i~gw~~~~vI 163 (590)
T KOG1032|consen 84 KGGLKGSPKTEKGYIGSSALLAGVNLASEFLNGVPDPEILLTDYSCALQREILLQGRMYISEEHICFNSNIFGWETKVVI 163 (590)
T ss_pred CCCCCcccccCccccchhhhhcchhhhhhhhhcCCCcceeeeecchhhccccccccccccccceeeecccccCccceeEE
Confidence 66667777778888889999999999988888899999999999999999999999999999999999555555677788
Q ss_pred EEecCCCCCCCccceEEEEEcccccCCCccceEEEccccccccccceeEEEEEEeccCCchhhhhhhhhhhhcccee--e
Q 001703 603 VFDFDGPFDQATSLGHAEINFLKHTSTELADMWVSLEGKLAQSAQSKVHLRIFLENNNGVETIKEYLTKMEKEVGKK--L 680 (1024)
Q Consensus 603 V~D~d~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~g~l~l~~~~~~~~~~~~~~~~l~~~eke~~~k--~ 680 (1024)
+++++..+.+-.-.|.+...+.-- .......|.+|.++.+..+.-+++++..+.....+.....++...+.+...+ -
T Consensus 164 pf~eI~~ikk~~tag~fpn~i~i~-t~~~ky~f~s~~Srda~~~~~~~~~~~~~~~s~s~~~~~~~l~~~~~~~~~~~~~ 242 (590)
T KOG1032|consen 164 PFDEITLIKKTKTAGIFPNAIEIT-TGTTKYIFVSLLSRDATYKLIKLLLHKFLDSSGSPRADSDYLSSVEPEVNDDQQG 242 (590)
T ss_pred eeeeeeeeehhhhccCCCcceEEe-cCCCcceeeecccCccHHHHHHHhhhhcccccCCccccchhcccCCCCcCccccc
Confidence 888887556666677666665544 5566788999998877776667888888888888888888888888877766 3
Q ss_pred cccCCCCcccccccccCCCccccccceeeeeecccccccceeeeecEEEEEeccCCCeEEEEEecccceeeEeccccccc
Q 001703 681 NLRSPHRNSTFQKLFALPPEEFLIKDFTCYLKRKMPLQGRLFLSARIVGFYANLFGNKTKFFFLWEDIEDIQILSPSLAT 760 (1024)
Q Consensus 681 ~~~s~~k~~~f~~~f~l~~~e~l~~~~~c~~~~~~~~~G~lyis~~~~cF~s~~~g~~~~~~i~~~di~~i~k~~~~~~~ 760 (1024)
....+.....+...|++|.+|.+..+++|.+.+..+++|+++++....||++.+||..+++...|+|+..++........
T Consensus 243 ~~~~~~~~s~~~~s~~~~~~e~~~~~~~~~~~~~~~v~~~~~~s~~~~~~~~~lf~d~~~~~~~l~~~~~~~vs~~~~~~ 322 (590)
T KOG1032|consen 243 NVDNSQSPSALQNSFDSPKEEELEHDFSCSLSRLFGVLGRLPFSAPIGAFFSLLFGDNTFFFFFLEDQDEIQVSPIPWKG 322 (590)
T ss_pred ccccCCCccccccccCCCccccccccccccccccccccccccccccccccceeeccCcceeeeccccccccccccccccC
Confidence 55677888999999999999999999999999999999999999999999999999999999999999999988765533
Q ss_pred cCCCcEEEEEeccCCcccCCCccccCCCCceEEEEEeecC-hhHHHHHHHHHHHhcCCChhhhhhhhcccccccccc-Cc
Q 001703 761 VGSPSLVIILWKGRGLDARHGAKSQDEEGRLRFYFQSFVS-FNDASRTIMALWRSRTLTAYQKEQIAEEQQVQEEMS-TA 838 (1024)
Q Consensus 761 ~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~f~sf~~-rd~~~~~l~~~~~~~~~~~~~~~~~~~~~s~~~~~~-~~ 838 (1024)
...+-.......+.++.+.++.++++..+...++|..+.. ..-...+++..|............+..........+ ..
T Consensus 323 ~~~~~~~r~~~y~~~l~~~~gPk~t~~~~~~~l~~~~~~~~~~vls~t~~~~vps~~~f~v~~~y~i~~~~~~~~~l~v~ 402 (590)
T KOG1032|consen 323 PRSGILLRTLSYTKGLPAKSGPKSTDCEGTQTLHHQDLEKYFRVLSETLTPDVPSGDSFYVKTRYLISRAGSNSCKLKVS 402 (590)
T ss_pred CCccceeEeccCCccCCCcCCCccccccceeeEEeccchhhhhhhheeccCCccccceeeeeEEEEEEecCCcceeecce
Confidence 3323355566778899999999999999988888887766 333333333333332211111111111110000000 00
Q ss_pred cCCCCCCCCCCccccccccccccCCHHhHhhhccCChhHHHHHHHhCCcceeecccccCCCCceEEEEEEEE--cccccC
Q 001703 839 ADRGSVPNFEDAKMSKVYNAELPISVKALMEMFDGGKLEHQVMEKSGCHNYVTTPWDLVKPGVCERHLSYRF--NRHVSI 916 (1024)
Q Consensus 839 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~lf~~~~~~~~~~~~~~~~~i~~~~W~~~~~~~~~R~~sy~~--n~~~~~ 916 (1024)
....-.....+..+.++.....++.++.+.++|.+.+-...-+++.++..+.-++|+...++..+|..+|+- ++++++
T Consensus 403 ~~V~~~~~sw~~~~~~~~~~~~k~lv~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~v~~~~~~v~~~~~~~~~~~~i~~ 482 (590)
T KOG1032|consen 403 TSVEWTKSSWDVPVSEIGSNTLKDLVEILEKLLENGEELAKNQEKEDELTYEGSPWEVEKPGGTVRQLSYKEVWNKPISP 482 (590)
T ss_pred eEEEeccCchhhccccccccchhhHHHHHHHHHhccHHHHHhhcccccccccCCCccccCCCceeeeecccccccccccc
Confidence 000000112234455555545566677777788888877888888888888888999777899999999997 889999
Q ss_pred CCceecEEEEEeecCCCCcEEEEEEEecCCCCCCCceEEEEEEE-EEecCCCCCccEEEEEEEEEEecccchhhhhhhhh
Q 001703 917 FGGEVTCTQQKSPLASGEGWIVNEVMSLHDVPFDDHFRVHFRYE-IEKSPLAHNACKCAIYIGISWLKSTKFQQRITQNI 995 (1024)
Q Consensus 917 ~~~~~~~~Q~~~~~~~~~~~vv~~~~~~~dVPygd~F~v~~r~~-i~~~~~~~~~c~l~v~~~V~f~Kst~~K~~Ie~~~ 995 (1024)
....++..|+.........|+++++..+++||||++|.|+.||. +.........+.+.++..|.|+|...++-..-+..
T Consensus 483 ~~~~~~~~~i~~l~~~~~~~l~~~i~~l~~~~~g~~~~~h~r~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~~~~k~~ 562 (590)
T KOG1032|consen 483 DKREVTLLQVVVLVPLKILWLLNTILFLHDVPFGSYFEVHERYREALDETSKVKTTLVWVSFRIEWLKDIKMEARKIKQI 562 (590)
T ss_pred ccccceeEEEEEEehhhhhHHHHHHhhccCCCCccceeeehhhhhhhcccchhhhhhHHHHHHHHHHHHHHHHHhhhHHH
Confidence 98999999998887777888999999999999999999999994 32223334677888888999999999999999999
Q ss_pred HHhHHHHHHHHHHHHHHHHhhcccCCC
Q 001703 996 TEKFTHRLKEMIELVEREILFATQQDA 1022 (1024)
Q Consensus 996 ~~g~~~~~~~~~~~~~~~i~~~~~~~~ 1022 (1024)
+...++..+.++.++++.-..+++.++
T Consensus 563 ~r~~~~~l~~~~~~l~~~~~~~~~~d~ 589 (590)
T KOG1032|consen 563 LRNDQDLLEVLFSLLEKLSQSNSQLDQ 589 (590)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhccC
Confidence 999999999999999999888877654
No 3
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=99.88 E-value=8.1e-22 Score=187.03 Aligned_cols=118 Identities=18% Similarity=0.299 Sum_probs=105.8
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCEEEeeecccC-CCCCeEeEEEEEEeecCCCCeEEEEEEecCCCCCCCc
Q 001703 536 WVLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQ-TCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQAT 614 (1024)
Q Consensus 536 ~~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~~~~-t~nP~WnE~f~f~~~~~~~~~L~v~V~D~d~~~~~dd 614 (1024)
|+|.|+|++|++++..+ .|++||||+|++++++++|+++.+ ++||+|||+|.|.+. +....|.|+|||+|. +++|+
T Consensus 2 g~L~v~v~~Ak~l~~~~-~g~sDPYv~i~lg~~~~kT~v~~~~~~nP~WNe~F~f~v~-~~~~~l~~~V~d~d~-~~~dd 78 (121)
T cd04016 2 GRLSITVVQAKLVKNYG-LTRMDPYCRIRVGHAVYETPTAYNGAKNPRWNKTIQCTLP-EGVDSIYIEIFDERA-FTMDE 78 (121)
T ss_pred cEEEEEEEEccCCCcCC-CCCCCceEEEEECCEEEEeEEccCCCCCCccCeEEEEEec-CCCcEEEEEEEeCCC-CcCCc
Confidence 69999999999998877 899999999999999999999865 899999999999964 345689999999999 89999
Q ss_pred cceEEEEEcc-cccCCCccceEEEccccccccccceeEEEEEE
Q 001703 615 SLGHAEINFL-KHTSTELADMWVSLEGKLAQSAQSKVHLRIFL 656 (1024)
Q Consensus 615 ~lG~~~i~l~-~l~~~~~~~~w~~L~~~~~~~~~g~l~l~~~~ 656 (1024)
+||++.|+|. .+..++..+.|++|.++.+....|+|||.+.+
T Consensus 79 ~iG~~~i~l~~~~~~g~~~~~W~~L~~~~~~~~~g~i~l~l~y 121 (121)
T cd04016 79 RIAWTHITIPESVFNGETLDDWYSLSGKQGEDKEGMINLVFSY 121 (121)
T ss_pred eEEEEEEECchhccCCCCccccEeCcCccCCCCceEEEEEEeC
Confidence 9999999996 57777778999999987777788999999863
No 4
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=2.1e-21 Score=222.83 Aligned_cols=167 Identities=26% Similarity=0.369 Sum_probs=146.2
Q ss_pred CcEEEEEEEEeecCC------CCCcEEEEEECC---eEEeeecccCCCCCeEeeEEEEEEe--cCCCCeEEEEEEecCCC
Q 001703 3 STRLYVYVLQGQDLL------AKDSYVKVQIGK---HKSKSRILKNNSNPVWNEEFVFRVH--NIDDEELVVSVFQHNDD 71 (1024)
Q Consensus 3 ~~~L~V~V~~Ar~L~------~~DPyv~v~l~~---~~~rT~v~~~t~nP~WnE~f~f~v~--~~~~~~L~v~V~d~d~~ 71 (1024)
...|.|+|++|++|+ .+||||++++.. .+.+|++.++++||+|||+|.|.|+ +.....|.+.|||.|
T Consensus 166 ~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~tlnP~fnEtf~f~v~~~~l~~~~L~l~V~~~d-- 243 (421)
T KOG1028|consen 166 LNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRKTLNPVFNETFRFEVPYEELSNRVLHLSVYDFD-- 243 (421)
T ss_pred CCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeecCcCCccccceEeecCHHHhccCEEEEEEEecC--
Confidence 467999999999999 589999999964 5699999999999999999999977 578899999999999
Q ss_pred CCCCCCCCCeeEEEEEeCccccccCCCCCCCEEEEeecCCCCCCCCccccEEEEEEEEEecCCeeeEEEEEeeccCCCCC
Q 001703 72 SGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTISLNGKGHNLSSNRLLYLHSNVSSN 151 (1024)
Q Consensus 72 ~~f~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~~~~~~~l~v~v~~~~~~~L~~~ 151 (1024)
+| +++++||++.++|..+.... ....|++|....... ....|+|+++++|.+.+++|+|.|++| +||+.+
T Consensus 244 -rf--sr~~~iGev~~~l~~~~~~~---~~~~w~~l~~~~~~~--~~~~gel~~sL~Y~p~~g~ltv~v~ka--r~L~~~ 313 (421)
T KOG1028|consen 244 -RF--SRHDFIGEVILPLGEVDLLS---TTLFWKDLQPSSTDS--EELAGELLLSLCYLPTAGRLTVVVIKA--RNLKSM 313 (421)
T ss_pred -Cc--ccccEEEEEEecCccccccc---cceeeeccccccCCc--ccccceEEEEEEeecCCCeEEEEEEEe--cCCCcc
Confidence 74 79999999999999988753 267799998433322 223389999999999999999999998 999999
Q ss_pred CCCCCCCCeEEEEecCCCCCCccccccccc
Q 001703 152 ESKELEDPCVLSHDVSCSKAPCLDVTEGNH 181 (1024)
Q Consensus 152 ~~~g~sdp~vkv~l~~~~~~~~~~~~~~~~ 181 (1024)
+..+.+|||||++++.+.++..+++|..++
T Consensus 314 ~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~ 343 (421)
T KOG1028|consen 314 DVGGLSDPYVKVTLLDGDKRLSKKKTSVKK 343 (421)
T ss_pred cCCCCCCccEEEEEecCCceeeeeeeeccc
Confidence 999999999999999999888888877665
No 5
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=99.85 E-value=2e-19 Score=214.70 Aligned_cols=122 Identities=28% Similarity=0.415 Sum_probs=108.7
Q ss_pred CCeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCE-EEeeecccCCCCCeEeEEEEEEeecCCCCeEEEEEEecCCCCCC
Q 001703 534 DGWVLTVALVEGVNLASSEMTGLSDPYVVFTCNGK-TRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQ 612 (1024)
Q Consensus 534 ~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~-~~kT~~~~~t~nP~WnE~f~f~~~~~~~~~L~v~V~D~d~~~~~ 612 (1024)
+.|-|+|.+..|.||+..|.+|.+||||++.++++ .++|+++++|+||+|||+|..++.......+.+.|+|||. -.+
T Consensus 1038 nsG~l~I~~~~~~nl~~~d~ng~sDpfv~~~ln~k~vyktkv~KktlNPvwNEe~~i~v~~r~~D~~~i~v~Dwd~-~~k 1116 (1227)
T COG5038 1038 NSGYLTIMLRSGENLPSSDENGYSDPFVKLFLNEKSVYKTKVVKKTLNPVWNEEFTIEVLNRVKDVLTINVNDWDS-GEK 1116 (1227)
T ss_pred ccCcEEEEEeccCCCcccccCCCCCceEEEEecceecccccchhccCCCCccccceEeeeccccceEEEEEeeccc-CCC
Confidence 46899999999999999999999999999999876 7899999999999999999999887888899999999998 589
Q ss_pred CccceEEEEEcccccCCCccceEEEccccccccccceeEEEEEE
Q 001703 613 ATSLGHAEINFLKHTSTELADMWVSLEGKLAQSAQSKVHLRIFL 656 (1024)
Q Consensus 613 dd~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~g~l~l~~~~ 656 (1024)
+|.||.+.++|..+..+.....-++|+++......|.++....+
T Consensus 1117 nd~lg~~~idL~~l~~~~~~n~~i~ldgk~~~~~~g~~~~~~~~ 1160 (1227)
T COG5038 1117 NDLLGTAEIDLSKLEPGGTTNSNIPLDGKTFIVLDGTLHPGFNF 1160 (1227)
T ss_pred ccccccccccHhhcCcCCccceeeeccCcceEecccEeecceec
Confidence 99999999999999999888888999986533445666666554
No 6
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=99.84 E-value=2.3e-20 Score=180.44 Aligned_cols=116 Identities=19% Similarity=0.346 Sum_probs=102.6
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEECCEEEeeecccCCCCCeEeEEEEEEeec-----CCCCeEEEEEEecCCCCCC
Q 001703 538 LTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAME-----EPPSVLDVEVFDFDGPFDQ 612 (1024)
Q Consensus 538 L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~~~~t~nP~WnE~f~f~~~~-----~~~~~L~v~V~D~d~~~~~ 612 (1024)
++|+|++|+||+.++..|.+||||+|.+++++++|+++++++||+|||+|.|.+.. .....|.|+|||+|. +++
T Consensus 1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~~~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~-~~~ 79 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNL-LGL 79 (126)
T ss_pred CEEEEEECcCCcCCCCCcCCCceEEEEECCeeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccc-cCC
Confidence 47999999999999999999999999999999999999999999999999999754 246789999999998 899
Q ss_pred CccceEEEEEccccc--CCCccceEEEccccccc--cccceeEEEE
Q 001703 613 ATSLGHAEINFLKHT--STELADMWVSLEGKLAQ--SAQSKVHLRI 654 (1024)
Q Consensus 613 dd~lG~~~i~l~~l~--~~~~~~~w~~L~~~~~~--~~~g~l~l~~ 654 (1024)
|++||++.|+|.++. .+...+.||+|.++.+. ...|+|+|++
T Consensus 80 d~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~~~~~~~~~Gei~l~~ 125 (126)
T cd08682 80 DKFLGQVSIPLNDLDEDKGRRRTRWFKLESKPGKDDKERGEIEVDI 125 (126)
T ss_pred CceeEEEEEEHHHhhccCCCcccEEEECcCCCCCCccccceEEEEe
Confidence 999999999999987 56677899999874332 3479999886
No 7
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=99.82 E-value=1.3e-19 Score=173.84 Aligned_cols=119 Identities=25% Similarity=0.389 Sum_probs=107.8
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-EEEeeecccCCCCCeEeEEEEEEeecCCCCeEEEEEEecCCCCCCCcc
Q 001703 537 VLTVALVEGVNLASSEMTGLSDPYVVFTCNG-KTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQATS 615 (1024)
Q Consensus 537 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~-~~~kT~~~~~t~nP~WnE~f~f~~~~~~~~~L~v~V~D~d~~~~~dd~ 615 (1024)
.|+|+|++|+||+..|..|.+||||++.+++ ..++|+++.+++||+|||.|.|.+ ......|.|+|||+|. +++|++
T Consensus 1 ~L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~f~v-~~~~~~l~~~v~D~d~-~~~~~~ 78 (121)
T cd04042 1 QLDIHLKEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPI-EDVTQPLYIKVFDYDR-GLTDDF 78 (121)
T ss_pred CeEEEEEEeeCCCCcCCCCCCCCeEEEEECCEEEEEeeeccCCCCCccceeEEEEe-cCCCCeEEEEEEeCCC-CCCCcc
Confidence 3799999999999999999999999999987 678999999999999999999995 4456799999999999 789999
Q ss_pred ceEEEEEcccccCCCccceEEEccccccccccceeEEEEEEe
Q 001703 616 LGHAEINFLKHTSTELADMWVSLEGKLAQSAQSKVHLRIFLE 657 (1024)
Q Consensus 616 lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~g~l~l~~~~~ 657 (1024)
||++.++|.++..+...+.|++|.++.+....|+|+|.+.+.
T Consensus 79 iG~~~~~l~~l~~~~~~~~~~~L~~~~~~~~~G~l~l~~~~~ 120 (121)
T cd04042 79 MGSAFVDLSTLELNKPTEVKLKLEDPNSDEDLGYISLVVTLT 120 (121)
T ss_pred eEEEEEEHHHcCCCCCeEEEEECCCCCCccCceEEEEEEEEC
Confidence 999999999999888899999998765555689999999875
No 8
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=99.82 E-value=1.5e-19 Score=172.31 Aligned_cols=115 Identities=30% Similarity=0.501 Sum_probs=105.7
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECCEEEeeecccCCCCCeEeEEEEEEeecCCCCeEEEEEEecCCCCCCCccc
Q 001703 537 VLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQATSL 616 (1024)
Q Consensus 537 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~~~~t~nP~WnE~f~f~~~~~~~~~L~v~V~D~d~~~~~dd~l 616 (1024)
+|+|+|++|+||+..+..|.+||||++++++++.+|+++++|+||.|||+|.|.+.......|.|+|||+|. +++|++|
T Consensus 1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~-~~~~~~i 79 (116)
T cd08376 1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKDT-GKKDEFI 79 (116)
T ss_pred CEEEEEEEEECCCCCCCCCCCCcEEEEEECCEeEecccccCCCCCceeEEEEEEecCCCCCEEEEEEEECCC-CCCCCeE
Confidence 479999999999999999999999999999999999999999999999999999765557899999999998 7899999
Q ss_pred eEEEEEcccccCCCccceEEEccccccccccceeEEEEEEe
Q 001703 617 GHAEINFLKHTSTELADMWVSLEGKLAQSAQSKVHLRIFLE 657 (1024)
Q Consensus 617 G~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~g~l~l~~~~~ 657 (1024)
|++.++|.++..+...+.|++|++. .|+|++.+++.
T Consensus 80 G~~~~~l~~l~~~~~~~~w~~L~~~-----~G~~~~~~~~~ 115 (116)
T cd08376 80 GRCEIDLSALPREQTHSLELELEDG-----EGSLLLLLTLT 115 (116)
T ss_pred EEEEEeHHHCCCCCceEEEEEccCC-----CcEEEEEEEec
Confidence 9999999999998899999999862 59999998764
No 9
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.82 E-value=1e-19 Score=173.82 Aligned_cols=114 Identities=18% Similarity=0.272 Sum_probs=100.2
Q ss_pred EEEEEEEEeeC---CCCCCCCCCCCcEEEEEECCEEEeeecccCCCCCeEeEEEEEEeecCCCCeEEEEEEecCCCCC--
Q 001703 537 VLTVALVEGVN---LASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFD-- 611 (1024)
Q Consensus 537 ~L~V~vi~a~~---L~~~d~~g~~DPyv~v~~~~~~~kT~~~~~t~nP~WnE~f~f~~~~~~~~~L~v~V~D~d~~~~-- 611 (1024)
.|.|+|++|+| |+.+|..|++||||+|++++++.+|+++++++||+|||+|.|.+. .+...|.|+|||+|. ++
T Consensus 1 ~L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~~~~rTk~~~~~~nP~WnE~f~f~v~-~~~~~l~v~V~d~d~-~~~~ 78 (126)
T cd08379 1 ILEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPVY-DPCTVLTVGVFDNSQ-SHWK 78 (126)
T ss_pred CeEEEEEEeECCccccccccCCCCCeeEEEEECCEEeEcCcccCCCCCcceeEEEEEec-CCCCEEEEEEEECCC-cccc
Confidence 37999999999 899999999999999999999999999999999999999999954 455699999999997 63
Q ss_pred ----CCccceEEEEEcccccCCCccceEEEccccc--cccccceeEE
Q 001703 612 ----QATSLGHAEINFLKHTSTELADMWVSLEGKL--AQSAQSKVHL 652 (1024)
Q Consensus 612 ----~dd~lG~~~i~l~~l~~~~~~~~w~~L~~~~--~~~~~g~l~l 652 (1024)
+|++||++.++|..+..+...+.||+|.... +....|+|++
T Consensus 79 ~~~~~dd~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~g~l~~ 125 (126)
T cd08379 79 EAVQPDVLIGKVRIRLSTLEDDRVYAHSYPLLSLNPSGVKKMGELEC 125 (126)
T ss_pred ccCCCCceEEEEEEEHHHccCCCEEeeEEEeEeCCCCCccCCcEEEe
Confidence 8999999999999999998889999998632 2335677764
No 10
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.82 E-value=1.2e-19 Score=179.69 Aligned_cols=125 Identities=24% Similarity=0.338 Sum_probs=108.2
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECCEEEeeecccC-CCCCeEeEEEEEEeecCCCCeEEEEEEecCCCCCCCcc
Q 001703 537 VLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQ-TCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQATS 615 (1024)
Q Consensus 537 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~~~~-t~nP~WnE~f~f~~~~~~~~~L~v~V~D~d~~~~~dd~ 615 (1024)
.|+|+|++|+||+++|.+|.+||||++.++++..+|+++.+ ++||+|||.|+|.+.......|.|+|||++. +++|++
T Consensus 1 ~L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~~~~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~-~~~dd~ 79 (150)
T cd04019 1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVG-PNKDEP 79 (150)
T ss_pred CEEEEEEEeECCCCCCCCCCCCeEEEEEECCEEeeeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEecC-CCCCCe
Confidence 37999999999999999999999999999999999999876 6999999999999755445799999999998 789999
Q ss_pred ceEEEEEcccccCC----CccceEEEcccccc-------ccccceeEEEEEEeccCCc
Q 001703 616 LGHAEINFLKHTST----ELADMWVSLEGKLA-------QSAQSKVHLRIFLENNNGV 662 (1024)
Q Consensus 616 lG~~~i~l~~l~~~----~~~~~w~~L~~~~~-------~~~~g~l~l~~~~~~~~~~ 662 (1024)
||++.|+|.++..+ ...+.||+|.+..+ ...+|+|+|++.+..+...
T Consensus 80 lG~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~~~~~~ 137 (150)
T cd04019 80 LGRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLDGGYHV 137 (150)
T ss_pred EEEEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcccccEEEEEEecCcceE
Confidence 99999999998643 45689999987543 3457999999999866543
No 11
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=99.82 E-value=6.4e-22 Score=230.96 Aligned_cols=465 Identities=18% Similarity=0.198 Sum_probs=286.9
Q ss_pred cEEEEEEEEeecCC------CCCcEEEEEECCeEEeeecccCCCCCeEeeEEEEE-Ee--------cCCCCeEEEEEEec
Q 001703 4 TRLYVYVLQGQDLL------AKDSYVKVQIGKHKSKSRILKNNSNPVWNEEFVFR-VH--------NIDDEELVVSVFQH 68 (1024)
Q Consensus 4 ~~L~V~V~~Ar~L~------~~DPyv~v~l~~~~~rT~v~~~t~nP~WnE~f~f~-v~--------~~~~~~L~v~V~d~ 68 (1024)
-.|+++|++||.|. .+|||+.+.+.++.+.|.++.+|+||.|+++..|. +. ......+.++|||.
T Consensus 206 ~~lR~yiyQar~L~a~dk~~~sdp~a~v~f~~qs~~T~~v~~tl~ptwdq~~~f~~~ei~ge~~~~~~~ppi~v~e~yd~ 285 (1105)
T KOG1326|consen 206 SPLRSYIYQARALGAPDKDDESDPDAAVEFCGQSKETEVVPGTLNPTWDQTIIFDEVEIYGEAHLVLKNPPIRVFEVYDL 285 (1105)
T ss_pred hhhHHHHHHHHhhcCCCcccCCCchhhhhcccccceeEeecCcCCCCccceeeccceeecCccchhhcCCCeEEEEeehh
Confidence 35788999999998 79999999999999999999999999999999998 43 12236789999999
Q ss_pred CCCCCCCCCCCCeeEEEEE-eCccccccCCCCCCCEEEEeecCCCCCCCCccccEEEEEEEEEecCCeeeEEEEEeeccC
Q 001703 69 NDDSGLFGSSGELMGRVRV-PVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTISLNGKGHNLSSNRLLYLHSN 147 (1024)
Q Consensus 69 d~~~~f~~~~d~~lG~~~i-~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~~~~~~~l~v~v~~~~~~~ 147 (1024)
| + .+.++|+|+... |...+. .+...|+++.+. +...|+++++........
T Consensus 286 d---r--~g~~ef~gr~~~~p~V~~~-----~p~lkw~p~~rg------~~l~gd~l~a~eliq~~~------------- 336 (1105)
T KOG1326|consen 286 D---R--SGINEFKGRKKQRPYVMVQ-----CPALKWVPTMRG------AFLDGDVLIAAELIQIGK------------- 336 (1105)
T ss_pred h---h--hchHHhhcccccceEEEec-----CCccceEEeecc------cccccchhHHHHHHhhcC-------------
Confidence 9 4 689999999877 333333 346789999833 356788888766544321
Q ss_pred CCCCCCCCCCCCe--EEEEecCCCCCCccccccccchhhhHHHHHHHhhccCCCCCCC-CCCCCCCCCCCCCCCC-CCCC
Q 001703 148 VSSNESKELEDPC--VLSHDVSCSKAPCLDVTEGNHLMKAMVSHLEKIFNKNDQGLKT-EDSSELSSTPSDYEDC-VEEH 223 (1024)
Q Consensus 148 L~~~~~~g~sdp~--vkv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~-~~s~~~~~~~~~~e~~-~~~~ 223 (1024)
..+..+|- .-+++.+.+.+++.++++.+.++.-+-+.- +...++. ..+....++.+..... ..+-
T Consensus 337 -----~i~~p~~~~~~~~~~vp~~iRp~~q~~~~evl~wgLrn~k------~~~m~~~~~P~~~~e~g~e~v~s~~I~~~ 405 (1105)
T KOG1326|consen 337 -----PIPQPPPQREIIFSLVPKKIRPKTQIGKAELLMWGLRNPK------KSGMASTFSPALLVEFGGERVSSFSIFNR 405 (1105)
T ss_pred -----CCCCCCcccccceeccccCCCcceeeeeeehhhhhhcccc------cccccccCCcceeEeeCCceEeeeeehhh
Confidence 01122221 137889999999999999888765542211 1111111 1234445555555543 3566
Q ss_pred CCCCcHHHHHHhhccCCCCCCC---CCCCCCcceeeeEEecChhhhcccccCCCchhHHH----HHHHhCccceeeCCCc
Q 001703 224 PPSHNFEEAIKMMQSRENEGDM---PENLQGGILLDQLYQVSPCDLNTFLFAPDSQFRKD----LAELQGTKDVQEGPWE 296 (1024)
Q Consensus 224 ~~~~~~~e~~~~~~~~~~~~e~---p~~~~~~~~~d~~~~~~~~~l~~llf~~~s~f~~~----~~~~~~~~~~~~~pw~ 296 (1024)
..+++|..++..+.+..+.++. |.+. .++|. ++|.+. .+.+..+..+.|.||.
T Consensus 406 k~npnf~s~~~~~~v~lpd~e~Y~ppl~a---kvvd~-----------------~~fg~~~v~g~c~i~~l~nf~c~p~~ 465 (1105)
T KOG1326|consen 406 KKNPNFPSRVLGRLVILPDEELYMPPLNA---KVVDL-----------------RQFGRMEVVGQCKILSLYNFFCDPSA 465 (1105)
T ss_pred hhCCCCceeEEEEEEeccchHhhCcccee---EEEec-----------------ccccceeehhhhcchhhhhhccCchh
Confidence 7778888788888887776664 2222 23322 223322 4556666777788885
Q ss_pred cCCCCCCeeEEEEEEEeccCccceeeEEEEEEEEEeeCCCeEEEEEeeeCCCCCCCCeEEEEEEEEeecCCCCCCCCCce
Q 001703 297 WKSGEMTCLTRAVSYMKAATKLVKAVKATEQQTYLKANGQEFAILVTVSTPDVPYGNTFNVQLLYKIIPGPELSSGEDSS 376 (1024)
Q Consensus 297 ~~~~~~~~~~R~~~y~~~~~~~~k~~~~~e~~~~~~~~~~~~~v~~~~~tpdvp~g~~F~v~~~y~i~~~p~~~~~~~~~ 376 (1024)
...-. |-...- ...+.. ++.+ +-++..... +-|..+ ..+.+
T Consensus 466 ~~~~~------------Pq~~~d-----------------~~~~~~----~~~~--~~~~~~~~~---~l~~~~-~~~~~ 506 (1105)
T KOG1326|consen 466 VNSIT------------PQFASD-----------------PVSIMM----GSTD--NEIRHCNSS---TLPASP-HEDEE 506 (1105)
T ss_pred hcccC------------cCCCCC-----------------chhhhc----CCch--hhhhhcccc---CCCCCc-ccccc
Confidence 33222 211100 000000 0000 011111111 111111 12334
Q ss_pred eEEEEEEEEEeeeeceecccccchHhhHHHHHHHHHHHHHhhccccccCCcCchhhhccccccccccchhhhhcccceee
Q 001703 377 HLIISWGIDFHQSTMMRGMIEGGARQGLKESFEQFANLLAQNLKILDSKDASDKDHMLATLQTEQQSDWELASEYFWNFT 456 (1024)
Q Consensus 377 ~l~i~~~i~~~~s~~~k~~iek~~~~g~~~~~~~~~~~l~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~ 456 (1024)
...++||-+|+.++-.. ++-+.-+. -..-.+|.++.+ ++ .+..|.++.
T Consensus 507 e~~~~~w~k~~~~~~~~------~k~~~~~~------K~~~~LKiyn~e-----------le---------~v~ef~~l~ 554 (1105)
T KOG1326|consen 507 EREVDWWGKFYPSAEEN------AKWEVYEH------KINVTLKIYNME-----------LE---------MVAEFRGLQ 554 (1105)
T ss_pred ceehhhhhhcccccccc------cccccccc------ccceEEEEehhh-----------hh---------hHHHHhhhh
Confidence 45678888888876111 11111000 001144455443 22 345577777
Q ss_pred eeehhhHHHHheeeeeeeCCCccCCccccCC----CCCCcceeEEeeeeEEeechhHHHHHHHHHhhccccCCCCCcccc
Q 001703 457 VVSAGFMILYVVVHILLCEPSKRQGLEFYGL----DLPDSFGELISCGILVIQLEQVFNMVGHFVRARLRKGSDHGVKAQ 532 (1024)
Q Consensus 457 ~~~~~~~~l~~~~~i~~~~p~~~~~~~~~~~----~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 532 (1024)
+.+.+|. +|++..- ...+....-.+|+|+ ++|++.+... ..++|. .++.. .
T Consensus 555 D~~~~f~-l~rG~~~-~e~~e~~Ivg~fKgl~rIyp~~~~~~~p~--------------~pr~~~---~~~~~------~ 609 (1105)
T KOG1326|consen 555 DWAVTFK-LYRGKEG-LECLEQQIVGEFKGLFRIYPVPRNPSSPA--------------PPRHFL---DLPKE------E 609 (1105)
T ss_pred hccceeE-eeecccc-CCCcccchhhhhhcceeeecCCCccCCCC--------------Chhhhh---ccccc------C
Confidence 7777776 5665532 111111111256662 5554433332 222221 11110 1
Q ss_pred CCCeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCEEE--eeecccCCCCCeEeEEEEEEeecCCCCeEEEEEEecCCCC
Q 001703 533 GDGWVLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTR--TSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPF 610 (1024)
Q Consensus 533 ~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~~--kT~~~~~t~nP~WnE~f~f~~~~~~~~~L~v~V~D~d~~~ 610 (1024)
....+++|.|++|.+|.+.|.+|.+|||+.|.+|++.. ++..+.+|+||++++.|++...-+....|.++|||+|. +
T Consensus 610 pi~~LvrVyvv~A~~L~p~D~ng~adpYv~l~lGk~~~~d~~~yip~tlnPVfgkmfel~~~lp~ek~l~v~vyd~D~-~ 688 (1105)
T KOG1326|consen 610 PIKCLVRVYVVEAFSLQPSDGNGDADPYVKLLLGKKRTLDRAHYIPNTLNPVFGKMFELECLLPFEKDLIVEVYDHDL-E 688 (1105)
T ss_pred cceeeEEEEEEEeeeccccCCCCCcCceeeeeeccchhhhhhhcCcCCCCcHHHHHHHhhcccchhhcceeEEEEeec-c
Confidence 23458899999999999999999999999999998874 66679999999999999999777778899999999999 8
Q ss_pred CCCccceEEEEEccc
Q 001703 611 DQATSLGHAEINFLK 625 (1024)
Q Consensus 611 ~~dd~lG~~~i~l~~ 625 (1024)
+.|+.+|+.+++|..
T Consensus 689 ~~d~~iget~iDLEn 703 (1105)
T KOG1326|consen 689 AQDEKIGETTIDLEN 703 (1105)
T ss_pred cccchhhceehhhhh
Confidence 999999999999985
No 12
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.81 E-value=2.1e-19 Score=174.00 Aligned_cols=120 Identities=20% Similarity=0.360 Sum_probs=104.8
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECCEEEeeecccCCCCCeEeEEEEEEeecCC---CCeEEEEEEecCCCCC-C
Q 001703 537 VLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAMEEP---PSVLDVEVFDFDGPFD-Q 612 (1024)
Q Consensus 537 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~~~~t~nP~WnE~f~f~~~~~~---~~~L~v~V~D~d~~~~-~ 612 (1024)
.|+|+|++|+||++.+..|.+||||++.+++++++|+++++++||+|||.|.|.+.... ...|.|+|||++. ++ +
T Consensus 1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~-~~~~ 79 (127)
T cd04022 1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRR-SGRR 79 (127)
T ss_pred CeEEEEEEeeCCCCCCCCCCcCcEEEEEECCEEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCC-CcCC
Confidence 37999999999999998999999999999999999999999999999999999964332 3589999999998 66 8
Q ss_pred CccceEEEEEccccc-CCCccceEEEccccc-cccccceeEEEEEEe
Q 001703 613 ATSLGHAEINFLKHT-STELADMWVSLEGKL-AQSAQSKVHLRIFLE 657 (1024)
Q Consensus 613 dd~lG~~~i~l~~l~-~~~~~~~w~~L~~~~-~~~~~g~l~l~~~~~ 657 (1024)
|++||++.+++..+. .+.....||+|+.++ ....+|+|+|+++++
T Consensus 80 d~~lG~v~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~ 126 (127)
T cd04022 80 RSFLGRVRISGTSFVPPSEAVVQRYPLEKRGLFSRVRGEIGLKVYIT 126 (127)
T ss_pred CCeeeEEEEcHHHcCCCCCccceEeEeeeCCCCCCccEEEEEEEEEc
Confidence 999999999999987 567788999998753 223589999999875
No 13
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=99.80 E-value=2.5e-19 Score=171.18 Aligned_cols=117 Identities=25% Similarity=0.403 Sum_probs=103.4
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCEEEeeeccc-CCCCCeEeEEEEEEeecCCCCeEEEEEEecCCCCCCCc
Q 001703 536 WVLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQL-QTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQAT 614 (1024)
Q Consensus 536 ~~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~~~-~t~nP~WnE~f~f~~~~~~~~~L~v~V~D~d~~~~~dd 614 (1024)
|.|+|+|++|+||+..+..|.+||||++.+++++.+|+++. +++||+|||.|.|.+..+....|.|+|||++. .+ |+
T Consensus 1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~-~~-~~ 78 (118)
T cd08681 1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDK-RK-PD 78 (118)
T ss_pred CEEEEEEEEccCCCCCCcCCCCCceEEEEECCCccccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCC-CC-Cc
Confidence 58999999999999999999999999999999999999875 58999999999999766566799999999998 55 99
Q ss_pred cceEEEEEcccccCCCccceEEEccccccccccceeEEEEEE
Q 001703 615 SLGHAEINFLKHTSTELADMWVSLEGKLAQSAQSKVHLRIFL 656 (1024)
Q Consensus 615 ~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~g~l~l~~~~ 656 (1024)
+||++.+++.++..+...+.|++|..+. ...|+|+|++++
T Consensus 79 ~iG~~~~~l~~~~~~~~~~~w~~L~~~~--~~~G~i~l~l~f 118 (118)
T cd08681 79 LIGDTEVDLSPALKEGEFDDWYELTLKG--RYAGEVYLELTF 118 (118)
T ss_pred ceEEEEEecHHHhhcCCCCCcEEeccCC--cEeeEEEEEEEC
Confidence 9999999999987777789999998643 357899998864
No 14
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=99.80 E-value=4.6e-19 Score=169.62 Aligned_cols=115 Identities=21% Similarity=0.355 Sum_probs=103.1
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEEC---CEEEeeecccCCCCCeEeEEEEEEeecCCCCeEEEEEEecCCCCCCC
Q 001703 537 VLTVALVEGVNLASSEMTGLSDPYVVFTCN---GKTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQA 613 (1024)
Q Consensus 537 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~---~~~~kT~~~~~t~nP~WnE~f~f~~~~~~~~~L~v~V~D~d~~~~~d 613 (1024)
.|+|+|++|+||+..+..|.+||||++.++ +.+++|+++++++||+|||+|.|.+.......|.|+|||+|. + +|
T Consensus 1 ~L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~-~-~~ 78 (119)
T cd04036 1 LLTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQVKNVLELTVMDEDY-V-MD 78 (119)
T ss_pred CeEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcccCCEEEEEEEECCC-C-CC
Confidence 378999999999999988999999999996 467899999999999999999999755555689999999998 7 89
Q ss_pred ccceEEEEEcccccCCCccceEEEccccccccccceeEEEEEEe
Q 001703 614 TSLGHAEINFLKHTSTELADMWVSLEGKLAQSAQSKVHLRIFLE 657 (1024)
Q Consensus 614 d~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~g~l~l~~~~~ 657 (1024)
++||++.+++.++..+...+.|++|.++ +.|+|++++.++
T Consensus 79 ~~iG~~~~~l~~l~~g~~~~~~~~L~~~----~~g~l~~~~~~~ 118 (119)
T cd04036 79 DHLGTVLFDVSKLKLGEKVRVTFSLNPQ----GKEELEVEFLLE 118 (119)
T ss_pred cccEEEEEEHHHCCCCCcEEEEEECCCC----CCceEEEEEEee
Confidence 9999999999999999999999999863 478999998875
No 15
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=99.79 E-value=7.6e-19 Score=168.05 Aligned_cols=116 Identities=18% Similarity=0.233 Sum_probs=100.9
Q ss_pred EEEEEEEeeCCCCCC-CCCCCCcEEEEEECCE-EEeeecccCCCCCeEeEEEEEEeecCCCCeEEEEEEecCCCCCCCcc
Q 001703 538 LTVALVEGVNLASSE-MTGLSDPYVVFTCNGK-TRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQATS 615 (1024)
Q Consensus 538 L~V~vi~a~~L~~~d-~~g~~DPyv~v~~~~~-~~kT~~~~~t~nP~WnE~f~f~~~~~~~~~L~v~V~D~d~~~~~dd~ 615 (1024)
|.|+|++|+||++++ ..|.+||||.|.++++ ..+|+++++|+||+|||+|.|++. +....|.|.|||+|. +++|++
T Consensus 2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~~~~~kT~v~~kt~~P~WnE~F~f~v~-~~~~~l~~~v~d~~~-~~~~~~ 79 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIP-RTFRHLSFYIYDRDV-LRRDSV 79 (121)
T ss_pred eEEEEEEccCCCCCCCCCCCcCcEEEEEECCccEEEeeEEECCCCCccCCeEEEEcC-CCCCEEEEEEEECCC-CCCCce
Confidence 689999999999974 4689999999999865 579999999999999999999954 445799999999998 899999
Q ss_pred ceEEEEEcccccCCCccceEEEcccc-ccccccceeEEEEE
Q 001703 616 LGHAEINFLKHTSTELADMWVSLEGK-LAQSAQSKVHLRIF 655 (1024)
Q Consensus 616 lG~~~i~l~~l~~~~~~~~w~~L~~~-~~~~~~g~l~l~~~ 655 (1024)
||++.++|+++..++..+.||+|++. .....+|+|||.+.
T Consensus 80 iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~ 120 (121)
T cd08401 80 IGKVAIKKEDLHKYYGKDTWFPLQPVDADSEVQGKVHLELR 120 (121)
T ss_pred EEEEEEEHHHccCCCCcEeeEEEEccCCCCcccEEEEEEEE
Confidence 99999999999888888999999873 22235899999874
No 16
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=99.79 E-value=9.7e-19 Score=166.02 Aligned_cols=113 Identities=19% Similarity=0.350 Sum_probs=96.3
Q ss_pred cEEEEEEEEeecCC-----CCCcEEEEEECCeEEeeecccC-CCCCeEeeEEEEEEecCCCCeEEEEEEecCCCCCCCCC
Q 001703 4 TRLYVYVLQGQDLL-----AKDSYVKVQIGKHKSKSRILKN-NSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLFGS 77 (1024)
Q Consensus 4 ~~L~V~V~~Ar~L~-----~~DPyv~v~l~~~~~rT~v~~~-t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~~~f~~~ 77 (1024)
+.|+|+|++|++|+ .+||||+|.++++++||+++.+ +.||+|||+|.|.+. .....|.|+|||+| . .+
T Consensus 2 g~L~v~v~~Ak~l~~~~~g~sDPYv~i~lg~~~~kT~v~~~~~~nP~WNe~F~f~v~-~~~~~l~~~V~d~d---~--~~ 75 (121)
T cd04016 2 GRLSITVVQAKLVKNYGLTRMDPYCRIRVGHAVYETPTAYNGAKNPRWNKTIQCTLP-EGVDSIYIEIFDER---A--FT 75 (121)
T ss_pred cEEEEEEEEccCCCcCCCCCCCceEEEEECCEEEEeEEccCCCCCCccCeEEEEEec-CCCcEEEEEEEeCC---C--Cc
Confidence 78999999999987 7999999999999999999876 899999999999995 44578999999999 4 57
Q ss_pred CCCeeEEEEEeCcc-ccccCCCCCCCEEEEeecCCCCCCCCccccEEEEEEEE
Q 001703 78 SGELMGRVRVPVSS-IAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTISL 129 (1024)
Q Consensus 78 ~d~~lG~~~i~L~~-l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~ 129 (1024)
+|++||++.++|.. +..+ ...+.|++|.+ ..+ ....|+|+|+++|
T Consensus 76 ~dd~iG~~~i~l~~~~~~g---~~~~~W~~L~~-~~~---~~~~g~i~l~l~y 121 (121)
T cd04016 76 MDERIAWTHITIPESVFNG---ETLDDWYSLSG-KQG---EDKEGMINLVFSY 121 (121)
T ss_pred CCceEEEEEEECchhccCC---CCccccEeCcC-ccC---CCCceEEEEEEeC
Confidence 89999999999964 5543 34789999983 332 3467999999987
No 17
>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=99.79 E-value=2.8e-19 Score=172.27 Aligned_cols=98 Identities=30% Similarity=0.487 Sum_probs=91.1
Q ss_pred CCeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCEEEeeecccCCCCCeEeEEEEEEeecCCCCeEEEEEEecCCCCCCC
Q 001703 534 DGWVLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQA 613 (1024)
Q Consensus 534 ~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~~~~t~nP~WnE~f~f~~~~~~~~~L~v~V~D~d~~~~~d 613 (1024)
..|.|+|+|++|.||..+|..++|||||++.+|+++.+|+++++++||+|||+|+|. ..++...|+++|||+|. |++|
T Consensus 4 ~vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg~q~lkT~~v~~n~NPeWNe~ltf~-v~d~~~~lkv~VyD~D~-fs~d 81 (168)
T KOG1030|consen 4 LVGLLRVRVKRGKNLAIRDFLGSSDPYVVLELGNQKLKTRVVYKNLNPEWNEELTFT-VKDPNTPLKVTVYDKDT-FSSD 81 (168)
T ss_pred cceEEEEEEEeecCeeeeccccCCCCeEEEEECCeeeeeeeecCCCCCcccceEEEE-ecCCCceEEEEEEeCCC-CCcc
Confidence 458999999999999999988999999999999999999999999999999999999 67788999999999999 9999
Q ss_pred ccceEEEEEcccccCCCccc
Q 001703 614 TSLGHAEINFLKHTSTELAD 633 (1024)
Q Consensus 614 d~lG~~~i~l~~l~~~~~~~ 633 (1024)
||||.|+|+|..+.......
T Consensus 82 D~mG~A~I~l~p~~~~~~~~ 101 (168)
T KOG1030|consen 82 DFMGEATIPLKPLLEAQKMD 101 (168)
T ss_pred cccceeeeccHHHHHHhhhh
Confidence 99999999999987665443
No 18
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.79 E-value=5.2e-19 Score=167.42 Aligned_cols=104 Identities=16% Similarity=0.260 Sum_probs=91.1
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEEC-----C--EEEeeecccCCCCCeEeEEEEEEeecC---CCCeEEEEEEec
Q 001703 537 VLTVALVEGVNLASSEMTGLSDPYVVFTCN-----G--KTRTSSVQLQTCDPQWHDILEFDAMEE---PPSVLDVEVFDF 606 (1024)
Q Consensus 537 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~-----~--~~~kT~~~~~t~nP~WnE~f~f~~~~~---~~~~L~v~V~D~ 606 (1024)
.|+|+|++|+||+..+ .|.+||||+|.+. . ++++|+++.+|+||+|||+|+|.+... ....|.|.|||+
T Consensus 1 kL~V~Vi~A~~L~~~d-~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~ 79 (120)
T cd08395 1 KVTVKVVAANDLKWQT-TGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDY 79 (120)
T ss_pred CEEEEEEECcCCCccc-CCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEe
Confidence 3899999999999988 5999999999983 1 357899999999999999999997543 234799999999
Q ss_pred CCCCCCCccceEEEEEcccccCCCccceEEEccccc
Q 001703 607 DGPFDQATSLGHAEINFLKHTSTELADMWVSLEGKL 642 (1024)
Q Consensus 607 d~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~~~ 642 (1024)
|. +++|++||++.++|.++..++..+.|++|+...
T Consensus 80 d~-~~~dd~IG~~~l~l~~~~~~~~~~~w~~L~~~~ 114 (120)
T cd08395 80 CF-ARDDRLVGVTVLQLRDIAQAGSCACWLPLGRRI 114 (120)
T ss_pred cc-cCCCCEEEEEEEEHHHCcCCCcEEEEEECcCcc
Confidence 98 788999999999999999999999999998643
No 19
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=99.79 E-value=1.1e-18 Score=169.34 Aligned_cols=119 Identities=25% Similarity=0.445 Sum_probs=105.3
Q ss_pred eEEEEEEEEeeCCCCCCC--CCCCCcEEEEEECCEEEeeecccCCCCCeEeEEEEEEeecCCCCeEEEEEEecCCCCCCC
Q 001703 536 WVLTVALVEGVNLASSEM--TGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQA 613 (1024)
Q Consensus 536 ~~L~V~vi~a~~L~~~d~--~g~~DPyv~v~~~~~~~kT~~~~~t~nP~WnE~f~f~~~~~~~~~L~v~V~D~d~~~~~d 613 (1024)
|+|+|+|++|+||+..+. .|.+||||++.+++++++|+++++++||.|||.|.|.+.......|.|+|||+|. ++++
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~~~~kT~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~-~~~~ 79 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKDR-FAGK 79 (128)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEECCEEEecceecCCcCCccCCcEEEEecCCCCCEEEEEEEECCC-CCCC
Confidence 689999999999999998 8999999999999999999999999999999999999765567899999999998 7899
Q ss_pred ccceEEEEEccccc---CCCccceEEEcccccc---ccccceeEEEEE
Q 001703 614 TSLGHAEINFLKHT---STELADMWVSLEGKLA---QSAQSKVHLRIF 655 (1024)
Q Consensus 614 d~lG~~~i~l~~l~---~~~~~~~w~~L~~~~~---~~~~g~l~l~~~ 655 (1024)
++||++.++|.++. .......||+|+++.. ...+|+|+|++.
T Consensus 80 ~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~~~G~i~l~~~ 127 (128)
T cd04024 80 DYLGEFDIALEEVFADGKTGQSDKWITLKSTRPGKTSVVSGEIHLQFS 127 (128)
T ss_pred CcceEEEEEHHHhhcccccCccceeEEccCcccCccccccceEEEEEE
Confidence 99999999999986 3345689999987522 235899999885
No 20
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=99.79 E-value=1.4e-18 Score=169.42 Aligned_cols=118 Identities=25% Similarity=0.351 Sum_probs=103.1
Q ss_pred CCeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCEEEeeecccCCCCCeEeEEEEEEeecCCCCeEEEEEEecCCCCCCC
Q 001703 534 DGWVLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQA 613 (1024)
Q Consensus 534 ~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~~~~t~nP~WnE~f~f~~~~~~~~~L~v~V~D~d~~~~~d 613 (1024)
..|.|+|+|++|+||++.|..|.+||||++.++++.++|+++++++||.|||+|.|.+.......|.|+|||+|. +++|
T Consensus 13 ~~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~~~~kT~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d~-~~~d 91 (136)
T cd08375 13 GIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDRDF-FSPD 91 (136)
T ss_pred CcEEEEEEEEEeeCCCCCCCCCCcCcEEEEEECCEeeeccccCCCCCCccCceEEEEecCccCCEEEEEEEECCC-CCCC
Confidence 457999999999999999999999999999999999999999999999999999999765556789999999998 8999
Q ss_pred ccceEEEEEcccccC-----CCccceEEEccccccccccceeEEEEEE
Q 001703 614 TSLGHAEINFLKHTS-----TELADMWVSLEGKLAQSAQSKVHLRIFL 656 (1024)
Q Consensus 614 d~lG~~~i~l~~l~~-----~~~~~~w~~L~~~~~~~~~g~l~l~~~~ 656 (1024)
++||++.++|.++.. ......|.+|.+ ...|+|+|++.+
T Consensus 92 ~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~----~~~g~i~l~~~~ 135 (136)
T cd08375 92 DFLGRTEIRVADILKETKESKGPITKRLLLHE----VPTGEVVVKLDL 135 (136)
T ss_pred CeeEEEEEEHHHhccccccCCCcEEEEecccc----ccceeEEEEEEe
Confidence 999999999999875 233345677653 457899999876
No 21
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=99.78 E-value=1.6e-18 Score=166.39 Aligned_cols=114 Identities=28% Similarity=0.490 Sum_probs=103.1
Q ss_pred eEEEEEEEEeeCCCCCCC------CCCCCcEEEEEECCEEEeeecccCCCCCeEeEEEEEEeecCCCCeEEEEEEecCCC
Q 001703 536 WVLTVALVEGVNLASSEM------TGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGP 609 (1024)
Q Consensus 536 ~~L~V~vi~a~~L~~~d~------~g~~DPyv~v~~~~~~~kT~~~~~t~nP~WnE~f~f~~~~~~~~~L~v~V~D~d~~ 609 (1024)
|+|+|+|++|+||+..|. .|.+||||++.++++.++|+++++++||+|||.|.|.+.......|.|+|||+|.
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v~d~~~- 79 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEAVVDEVPGQELEIELFDEDP- 79 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECCEeEEccccCCCCCCcccceEEEEeCCCCCCEEEEEEEecCC-
Confidence 579999999999999875 3789999999999999999999999999999999999766667899999999998
Q ss_pred CCCCccceEEEEEcccccCCCccceEEEccccccccccceeEEEEE
Q 001703 610 FDQATSLGHAEINFLKHTSTELADMWVSLEGKLAQSAQSKVHLRIF 655 (1024)
Q Consensus 610 ~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~g~l~l~~~ 655 (1024)
+ +|++||++.++|.++..+...+.||+|++. .+|+|+|++.
T Consensus 80 ~-~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~----~~G~~~~~~~ 120 (121)
T cd08391 80 D-KDDFLGRLSIDLGSVEKKGFIDEWLPLEDV----KSGRLHLKLE 120 (121)
T ss_pred C-CCCcEEEEEEEHHHhcccCccceEEECcCC----CCceEEEEEe
Confidence 6 899999999999999888888999999862 5799999875
No 22
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.78 E-value=1.9e-18 Score=165.29 Aligned_cols=113 Identities=23% Similarity=0.378 Sum_probs=99.6
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEECCEEEeeecccCCCCCeEeEEEEEEeecCCCCeEEEEEEecCCCCCCCccce
Q 001703 538 LTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQATSLG 617 (1024)
Q Consensus 538 L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~~~~t~nP~WnE~f~f~~~~~~~~~L~v~V~D~d~~~~~dd~lG 617 (1024)
|.|+|++|+||+.+ .+||||++.+++++.+|+++++++||+|||+|.|.+.......|.|+|||+|. + ++++||
T Consensus 2 L~V~Vi~a~~L~~~----~~Dpyv~v~l~~~~~kT~v~~~t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~-~-~~~~lG 75 (121)
T cd08378 2 LYVRVVKARGLPAN----SNDPVVEVKLGNYKGSTKAIERTSNPEWNQVFAFSKDRLQGSTLEVSVWDKDK-A-KDDFLG 75 (121)
T ss_pred EEEEEEEecCCCcc----cCCCEEEEEECCccccccccCCCCCCccceEEEEEcCCCcCCEEEEEEEeCCC-C-cCceee
Confidence 78999999999987 79999999999999999999999999999999999544456799999999998 5 889999
Q ss_pred EEEEEcccccCCC-----ccceEEEccccccccccceeEEEEEE
Q 001703 618 HAEINFLKHTSTE-----LADMWVSLEGKLAQSAQSKVHLRIFL 656 (1024)
Q Consensus 618 ~~~i~l~~l~~~~-----~~~~w~~L~~~~~~~~~g~l~l~~~~ 656 (1024)
++.++|.++.... ..+.||+|.+..+....|+|+|.+++
T Consensus 76 ~~~i~l~~l~~~~~~~~~~~~~W~~L~~~~~~~~~G~i~l~~~~ 119 (121)
T cd08378 76 GVCFDLSEVPTRVPPDSPLAPQWYRLEDKKGGRVGGELMLAVWF 119 (121)
T ss_pred eEEEEhHhCcCCCCCCCCCCcceEEccCCCCCccceEEEEEEEe
Confidence 9999999986532 35689999986655668999999986
No 23
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=99.77 E-value=3.5e-18 Score=164.52 Aligned_cols=117 Identities=28% Similarity=0.502 Sum_probs=102.5
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECCEEEeeecccCCCCCeEeEEEEEEeecCCCCeEEEEEEecCCCCCCCccc
Q 001703 537 VLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQATSL 616 (1024)
Q Consensus 537 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~~~~t~nP~WnE~f~f~~~~~~~~~L~v~V~D~d~~~~~dd~l 616 (1024)
.|+|+|++|++|+.++..|.+||||+|++++..++|+++++++||+|||+|.|.+.......|.|+|||+|. ++++++|
T Consensus 1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~-~~~~~~i 79 (123)
T cd04025 1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEGADSPLSVEVWDWDL-VSKNDFL 79 (123)
T ss_pred CEEEEEEEeeCCCCCCCCCCcCceEEEEECCEEEeceeecCCCCCccCcEEEEEcCCCCCCEEEEEEEECCC-CCCCcEe
Confidence 389999999999999988999999999999999999999999999999999999755556789999999998 7999999
Q ss_pred eEEEEEcccccCCCccceEEEcccccc-----ccccceeEEEE
Q 001703 617 GHAEINFLKHTSTELADMWVSLEGKLA-----QSAQSKVHLRI 654 (1024)
Q Consensus 617 G~~~i~l~~l~~~~~~~~w~~L~~~~~-----~~~~g~l~l~~ 654 (1024)
|++.++|.++..+...+.||.|.+... ....|.|++.|
T Consensus 80 G~~~~~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~~G~l~~~~ 122 (123)
T cd04025 80 GKVVFSIQTLQQAKQEEGWFRLLPDPRAEEESGGNLGSLRLKV 122 (123)
T ss_pred EEEEEEHHHcccCCCCCCEEECCCCCCCCccccCceEEEEEEe
Confidence 999999999987777899999987322 23467777765
No 24
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=99.76 E-value=6.8e-18 Score=161.83 Aligned_cols=116 Identities=22% Similarity=0.383 Sum_probs=100.5
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEECCEE-EeeecccCCCCCeEeEEEEEEeecCCCCeEEEEEEecCCCCCCCccc
Q 001703 538 LTVALVEGVNLASSEMTGLSDPYVVFTCNGKT-RTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQATSL 616 (1024)
Q Consensus 538 L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~-~kT~~~~~t~nP~WnE~f~f~~~~~~~~~L~v~V~D~d~~~~~dd~l 616 (1024)
|.|+|++|+||+++|..|.+||||++.+++.. .+|+++.+++||+|||.|.|.+ ......|.|+|||+|. +++|++|
T Consensus 2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~-~~~~~~l~v~v~d~~~-~~~d~~i 79 (121)
T cd04054 2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHL-PPGFHTVSFYVLDEDT-LSRDDVI 79 (121)
T ss_pred EEEEEEEeeCCcCCCCCCCCCceEEEEECCEeeeeeeeEcCCCCCcccceEEEee-CCCCCEEEEEEEECCC-CCCCCEE
Confidence 78999999999999999999999999998764 6999999999999999999995 4445799999999998 8999999
Q ss_pred eEEEEEcccccCC-CccceEEEcccc-ccccccceeEEEEE
Q 001703 617 GHAEINFLKHTST-ELADMWVSLEGK-LAQSAQSKVHLRIF 655 (1024)
Q Consensus 617 G~~~i~l~~l~~~-~~~~~w~~L~~~-~~~~~~g~l~l~~~ 655 (1024)
|++.+++..+..+ ...+.|++|++. .+....|+|+|.+.
T Consensus 80 G~~~~~~~~~~~~~~~~~~W~~L~~~~~~~~~~G~i~l~~~ 120 (121)
T cd04054 80 GKVSLTREVISAHPRGIDGWMNLTEVDPDEEVQGEIHLELS 120 (121)
T ss_pred EEEEEcHHHhccCCCCCCcEEECeeeCCCCccccEEEEEEE
Confidence 9999999887654 347899999863 33345799998875
No 25
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=99.76 E-value=6.5e-18 Score=163.28 Aligned_cols=117 Identities=22% Similarity=0.342 Sum_probs=102.5
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEEC--CEEEeeecccCCCCCeEeEEEEEEeecCCCCeEEEEEEecCCCCCCCcc
Q 001703 538 LTVALVEGVNLASSEMTGLSDPYVVFTCN--GKTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQATS 615 (1024)
Q Consensus 538 L~V~vi~a~~L~~~d~~g~~DPyv~v~~~--~~~~kT~~~~~t~nP~WnE~f~f~~~~~~~~~L~v~V~D~d~~~~~dd~ 615 (1024)
|.|+|++|+||+. ..|.+||||++.++ .++++|+++.+++||+|||.|.|.+ ......|.|+|||+|. +++|++
T Consensus 1 l~v~v~~A~~L~~--~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~-~~~~~~l~~~v~d~~~-~~~~~~ 76 (126)
T cd08678 1 LLVKNIKANGLSE--AAGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFEL-SPNSKELLFEVYDNGK-KSDSKF 76 (126)
T ss_pred CEEEEEEecCCCC--CCCCcCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEe-CCCCCEEEEEEEECCC-CCCCce
Confidence 5799999999998 68999999999997 4678999999999999999999995 4446789999999998 789999
Q ss_pred ceEEEEEcccccCCCccceEEEccccc--cccccceeEEEEEEec
Q 001703 616 LGHAEINFLKHTSTELADMWVSLEGKL--AQSAQSKVHLRIFLEN 658 (1024)
Q Consensus 616 lG~~~i~l~~l~~~~~~~~w~~L~~~~--~~~~~g~l~l~~~~~~ 658 (1024)
||++.+++..+..+.....|++|.++. +....|+|+|.+.+..
T Consensus 77 lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~l~l~~~~~~ 121 (126)
T cd08678 77 LGLAIVPFDELRKNPSGRQIFPLQGRPYEGDSVSGSITVEFLFME 121 (126)
T ss_pred EEEEEEeHHHhccCCceeEEEEecCCCCCCCCcceEEEEEEEEec
Confidence 999999999998888888999998753 2446899999997643
No 26
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=99.76 E-value=3.6e-18 Score=163.63 Aligned_cols=102 Identities=25% Similarity=0.352 Sum_probs=91.9
Q ss_pred CeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEC-----CEEEeeecccCCCCCeEeEEEEEEeec---CCCCeEEEEEEec
Q 001703 535 GWVLTVALVEGVNLASSEMTGLSDPYVVFTCN-----GKTRTSSVQLQTCDPQWHDILEFDAME---EPPSVLDVEVFDF 606 (1024)
Q Consensus 535 ~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~-----~~~~kT~~~~~t~nP~WnE~f~f~~~~---~~~~~L~v~V~D~ 606 (1024)
.+.|.|+|++|+||++++ .|.+||||++++. ..+++|+++++++||+|||+|.|++.+ .....|.|+|||+
T Consensus 12 ~~~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d~ 90 (122)
T cd08381 12 NGTLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSH 90 (122)
T ss_pred CCEEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEEEeC
Confidence 468999999999999999 9999999999996 347899999999999999999998622 2356899999999
Q ss_pred CCCCCCCccceEEEEEcccccCCCccceEEEc
Q 001703 607 DGPFDQATSLGHAEINFLKHTSTELADMWVSL 638 (1024)
Q Consensus 607 d~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L 638 (1024)
|. ++++++||++.|+|.++..++..+.||+|
T Consensus 91 d~-~~~~~~lG~~~i~l~~l~~~~~~~~W~~L 121 (122)
T cd08381 91 DS-LVENEFLGGVCIPLKKLDLSQETEKWYPL 121 (122)
T ss_pred CC-CcCCcEEEEEEEeccccccCCCccceEEC
Confidence 98 89999999999999999988888999998
No 27
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=99.76 E-value=1.3e-17 Score=160.82 Aligned_cols=117 Identities=15% Similarity=0.294 Sum_probs=99.7
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCEE-EeeecccCCCCCeEeEEEEEEeecCCCCeEEEEEEecCCCCCCCc
Q 001703 536 WVLTVALVEGVNLASSEMTGLSDPYVVFTCNGKT-RTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQAT 614 (1024)
Q Consensus 536 ~~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~-~kT~~~~~t~nP~WnE~f~f~~~~~~~~~L~v~V~D~d~~~~~dd 614 (1024)
..|+|+|++|+||++. +.+||||+|.+++.+ .+|++. +++||.|||.|.|.+.......|.|.|||+|. +++|+
T Consensus 4 ~~L~V~Vi~A~~L~~~---~~~DPYv~v~l~~~~~~kT~v~-~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~-~~~d~ 78 (126)
T cd08400 4 RSLQLNVLEAHKLPVK---HVPHPYCVISLNEVKVARTKVR-EGPNPVWSEEFVFDDLPPDVNSFTISLSNKAK-RSKDS 78 (126)
T ss_pred eEEEEEEEEeeCCCCC---CCCCeeEEEEECCEeEEEeecC-CCCCCccCCEEEEecCCCCcCEEEEEEEECCC-CCCCC
Confidence 3699999999999975 479999999998744 688874 68999999999998544433589999999998 79999
Q ss_pred cceEEEEEcccccCCCccceEEEccccc--cccccceeEEEEEEe
Q 001703 615 SLGHAEINFLKHTSTELADMWVSLEGKL--AQSAQSKVHLRIFLE 657 (1024)
Q Consensus 615 ~lG~~~i~l~~l~~~~~~~~w~~L~~~~--~~~~~g~l~l~~~~~ 657 (1024)
+||++.|+|..+..+...+.||+|.+.. +....|+|+|++.+.
T Consensus 79 ~iG~v~i~l~~l~~~~~~~~W~~L~~~~~~~~~~~G~i~l~l~~~ 123 (126)
T cd08400 79 EIAEVTVQLSKLQNGQETDEWYPLSSASPLKGGEWGSLRIRARYS 123 (126)
T ss_pred eEEEEEEEHhHccCCCcccEeEEcccCCCCCCCcCcEEEEEEEEE
Confidence 9999999999999888889999998854 344579999999875
No 28
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=99.75 E-value=1.2e-17 Score=161.69 Aligned_cols=119 Identities=22% Similarity=0.427 Sum_probs=103.6
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC---EEEeeecccCCCCCeEeEEEEEEeecCCCCeEEEEEEecCCCCCC
Q 001703 536 WVLTVALVEGVNLASSEMTGLSDPYVVFTCNG---KTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQ 612 (1024)
Q Consensus 536 ~~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~---~~~kT~~~~~t~nP~WnE~f~f~~~~~~~~~L~v~V~D~d~~~~~ 612 (1024)
+.|+|+|++|+||+..+..|.+||||++.+++ +..+|+++.+++||.|||+|.|.+.......|.|+|||+|. +++
T Consensus 1 ~~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~-~~~ 79 (126)
T cd04043 1 HLFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEPLWISATVWDRSF-VGK 79 (126)
T ss_pred CEEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCCCCCEEEEEEEECCC-CCC
Confidence 36899999999999999999999999999863 46799999999999999999999755556799999999998 789
Q ss_pred CccceEEEEEcccccC---CCccceEEEccccccccccceeEEEEEEeccCC
Q 001703 613 ATSLGHAEINFLKHTS---TELADMWVSLEGKLAQSAQSKVHLRIFLENNNG 661 (1024)
Q Consensus 613 dd~lG~~~i~l~~l~~---~~~~~~w~~L~~~~~~~~~g~l~l~~~~~~~~~ 661 (1024)
+++||++.++|..+.. +...+.|++|.+ +|+++|++.+...++
T Consensus 80 ~~~iG~~~i~l~~~~~~~~~~~~~~w~~l~~------~g~i~l~~~~~~~~~ 125 (126)
T cd04043 80 HDLCGRASLKLDPKRFGDDGLPREIWLDLDT------QGRLLLRVSMEGERD 125 (126)
T ss_pred CceEEEEEEecCHHHcCCCCCCceEEEEcCC------CCeEEEEEEEeeecc
Confidence 9999999999987543 446789999985 789999999987654
No 29
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.75 E-value=5.6e-18 Score=166.78 Aligned_cols=102 Identities=24% Similarity=0.317 Sum_probs=89.3
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----EEEeeecccCCCCCeEeEEEEEEeec--------------C-CC
Q 001703 537 VLTVALVEGVNLASSEMTGLSDPYVVFTCNG-----KTRTSSVQLQTCDPQWHDILEFDAME--------------E-PP 596 (1024)
Q Consensus 537 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~-----~~~kT~~~~~t~nP~WnE~f~f~~~~--------------~-~~ 596 (1024)
.|.|+|++|+||+. .+|.+||||+|++.+ .+++|+++++|+||+|||+|.|++.. . ..
T Consensus 1 kL~V~Vi~ArnL~~--~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~ 78 (148)
T cd04010 1 KLSVRVIECSDLAL--KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEK 78 (148)
T ss_pred CEEEEEEeCcCCCC--CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccE
Confidence 37999999999998 579999999999975 67899999999999999999999741 1 12
Q ss_pred CeEEEEEEecCCCCCCCccceEEEEEcccccCC-CccceEEEcccc
Q 001703 597 SVLDVEVFDFDGPFDQATSLGHAEINFLKHTST-ELADMWVSLEGK 641 (1024)
Q Consensus 597 ~~L~v~V~D~d~~~~~dd~lG~~~i~l~~l~~~-~~~~~w~~L~~~ 641 (1024)
..|.|+|||++. +++|+|||++.|+|..+..+ ...+.||+|+++
T Consensus 79 ~~L~i~V~d~~~-~~~ddfLG~v~i~l~~l~~~~~~~~~W~~L~~~ 123 (148)
T cd04010 79 LELRVDLWHASM-GGGDVFLGEVRIPLRGLDLQAGSHQAWYFLQPR 123 (148)
T ss_pred EEEEEEEEcCCC-CCCCceeEEEEEecccccccCCcCcceeecCCc
Confidence 479999999998 78999999999999999877 677899999874
No 30
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=99.75 E-value=8.8e-18 Score=162.40 Aligned_cols=115 Identities=30% Similarity=0.556 Sum_probs=96.4
Q ss_pred EEEEEEEeecCC------CCCcEEEEEECCeEEeeecccCCCCCeEeeEEEEEEec-----CCCCeEEEEEEecCCCCCC
Q 001703 6 LYVYVLQGQDLL------AKDSYVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHN-----IDDEELVVSVFQHNDDSGL 74 (1024)
Q Consensus 6 L~V~V~~Ar~L~------~~DPyv~v~l~~~~~rT~v~~~t~nP~WnE~f~f~v~~-----~~~~~L~v~V~d~d~~~~f 74 (1024)
++|+|++|+||+ .+||||+|++++.+.+|+++++++||+|||+|.|.++. +....|.|.|||++ .
T Consensus 1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~~~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~---~- 76 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRN---L- 76 (126)
T ss_pred CEEEEEECcCCcCCCCCcCCCceEEEEECCeeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEcc---c-
Confidence 589999999998 68999999999999999999999999999999999864 36789999999999 4
Q ss_pred CCCCCCeeEEEEEeCccccccCCCCCCCEEEEeecCCCCCCCCccccEEEEEEE
Q 001703 75 FGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTIS 128 (1024)
Q Consensus 75 ~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~ 128 (1024)
.++|++||++.++|.++.... ......||+|..... + ..+.+|+|+|+++
T Consensus 77 -~~~d~~iG~~~i~l~~l~~~~-~~~~~~W~~L~~~~~-~-~~~~~Gei~l~~~ 126 (126)
T cd08682 77 -LGLDKFLGQVSIPLNDLDEDK-GRRRTRWFKLESKPG-K-DDKERGEIEVDIQ 126 (126)
T ss_pred -cCCCceeEEEEEEHHHhhccC-CCcccEEEECcCCCC-C-CccccceEEEEeC
Confidence 578999999999999987422 234678999983322 1 2457899999874
No 31
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=99.75 E-value=2e-17 Score=158.29 Aligned_cols=117 Identities=26% Similarity=0.445 Sum_probs=103.2
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCEEEeeecccCCCCCeEeEEEEEEeecCCCCeEEEEEEecCCCCCCCcc
Q 001703 536 WVLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQATS 615 (1024)
Q Consensus 536 ~~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~~~~t~nP~WnE~f~f~~~~~~~~~L~v~V~D~d~~~~~dd~ 615 (1024)
|.|.|+|++|+||+..+..|.+||||++++++...+|+++++++||.|||+|.|.+ ......|.|+|||++. ++++++
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~~~~-~~~~~~l~~~v~d~~~-~~~~~~ 78 (119)
T cd08377 1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPI-KDIHDVLEVTVYDEDK-DKKPEF 78 (119)
T ss_pred CEEEEEEEeeeCCCCCCCCCCCCcEEEEEECCEeeecceecCCcCCccCcEEEEEe-cCcCCEEEEEEEECCC-CCCCce
Confidence 57999999999999999999999999999999999999999999999999999995 4456799999999998 789999
Q ss_pred ceEEEEEcccccCCCccceEEEcccccc-ccccceeEEEEEE
Q 001703 616 LGHAEINFLKHTSTELADMWVSLEGKLA-QSAQSKVHLRIFL 656 (1024)
Q Consensus 616 lG~~~i~l~~l~~~~~~~~w~~L~~~~~-~~~~g~l~l~~~~ 656 (1024)
||++.+++.++..+. ..|++|..... ...+|+|+|.+.+
T Consensus 79 iG~~~~~l~~~~~~~--~~~~~l~~~~~~~~~~G~i~l~~~~ 118 (119)
T cd08377 79 LGKVAIPLLSIKNGE--RKWYALKDKKLRTRAKGSILLEMDV 118 (119)
T ss_pred eeEEEEEHHHCCCCC--ceEEECcccCCCCceeeEEEEEEEe
Confidence 999999999987554 57999987532 3458999998865
No 32
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=99.75 E-value=2.1e-17 Score=165.47 Aligned_cols=119 Identities=21% Similarity=0.279 Sum_probs=102.2
Q ss_pred CeEEEEEEEEeeCCCCCC------------------------------CCCCCCcEEEEEECCEE-EeeecccCCCCCeE
Q 001703 535 GWVLTVALVEGVNLASSE------------------------------MTGLSDPYVVFTCNGKT-RTSSVQLQTCDPQW 583 (1024)
Q Consensus 535 ~~~L~V~vi~a~~L~~~d------------------------------~~g~~DPyv~v~~~~~~-~kT~~~~~t~nP~W 583 (1024)
.|.|.|+|++|++|+.+| ..|++||||+|.+++.+ .+|+++++++||+|
T Consensus 6 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v~~~~~nP~W 85 (158)
T cd04015 6 HGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVIENSENPVW 85 (158)
T ss_pred eeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEEeCCCCCCcc
Confidence 379999999999999988 35779999999999755 59999999999999
Q ss_pred eEEEEEEeecCCCCeEEEEEEecCCCCCCCccceEEEEEcccccCCCccceEEEccccccc--cccceeEEEEEE
Q 001703 584 HDILEFDAMEEPPSVLDVEVFDFDGPFDQATSLGHAEINFLKHTSTELADMWVSLEGKLAQ--SAQSKVHLRIFL 656 (1024)
Q Consensus 584 nE~f~f~~~~~~~~~L~v~V~D~d~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~--~~~g~l~l~~~~ 656 (1024)
||+|.|.+ ..+...|.|+|||+|. ++ +++||++.+++.++..+...+.|++|.+..++ ...|+|+|++.+
T Consensus 86 nE~F~~~~-~~~~~~l~~~V~d~d~-~~-~~~IG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~~~~~~l~v~~~f 157 (158)
T cd04015 86 NESFHIYC-AHYASHVEFTVKDNDV-VG-AQLIGRAYIPVEDLLSGEPVEGWLPILDSNGKPPKPGAKIRVSLQF 157 (158)
T ss_pred ceEEEEEc-cCCCCEEEEEEEeCCC-cC-CcEEEEEEEEhHHccCCCCcceEEECcCCCCCCCCCCCEEEEEEEE
Confidence 99999985 4556789999999998 54 68999999999999988889999999875333 346789988865
No 33
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.75 E-value=2.3e-17 Score=160.94 Aligned_cols=115 Identities=24% Similarity=0.430 Sum_probs=101.9
Q ss_pred CeEEEEEEEEeeCCCCCCCC----------CCCCcEEEEEECCEE-EeeecccCCCCCeEeEEEEEEeecCCCCeEEEEE
Q 001703 535 GWVLTVALVEGVNLASSEMT----------GLSDPYVVFTCNGKT-RTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEV 603 (1024)
Q Consensus 535 ~~~L~V~vi~a~~L~~~d~~----------g~~DPyv~v~~~~~~-~kT~~~~~t~nP~WnE~f~f~~~~~~~~~L~v~V 603 (1024)
.|.|+|+|++|+||++.|.. |.+||||++.++++. .+|+++.+++||.|||+|+|.+. ....|.|.|
T Consensus 3 ~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~--~~~~l~~~v 80 (132)
T cd04014 3 TGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPKTNSPVWNEEFTTEVH--NGRNLELTV 80 (132)
T ss_pred ceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEEeEEeEcCCCCCCCcceeEEEEcC--CCCEEEEEE
Confidence 36899999999999998863 689999999999865 59999999999999999999964 457999999
Q ss_pred EecCCCCCCCccceEEEEEcccccC--CCccceEEEccccccccccceeEEEEEEec
Q 001703 604 FDFDGPFDQATSLGHAEINFLKHTS--TELADMWVSLEGKLAQSAQSKVHLRIFLEN 658 (1024)
Q Consensus 604 ~D~d~~~~~dd~lG~~~i~l~~l~~--~~~~~~w~~L~~~~~~~~~g~l~l~~~~~~ 658 (1024)
||++. ++++++||++.++|.++.. +...+.|++|++ +|+|+|++.+..
T Consensus 81 ~d~~~-~~~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~~------~G~l~l~~~~~~ 130 (132)
T cd04014 81 FHDAA-IGPDDFVANCTISFEDLIQRGSGSFDLWVDLEP------QGKLHVKIELKG 130 (132)
T ss_pred EeCCC-CCCCceEEEEEEEhHHhcccCCCcccEEEEccC------CcEEEEEEEEec
Confidence 99998 7899999999999999887 567899999984 799999998865
No 34
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.75 E-value=1.4e-17 Score=162.71 Aligned_cols=118 Identities=21% Similarity=0.330 Sum_probs=101.0
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECCE-------EEeeecccCCCCCeEeEEEEEEeecCCCCeEEEEEEecCCC
Q 001703 537 VLTVALVEGVNLASSEMTGLSDPYVVFTCNGK-------TRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGP 609 (1024)
Q Consensus 537 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~-------~~kT~~~~~t~nP~WnE~f~f~~~~~~~~~L~v~V~D~d~~ 609 (1024)
+|+|+|++|+||+..|..|.+||||++.+++. +.+|+++++++||+|||+|.|.+. .....|.|+|||+|.
T Consensus 1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~-~~~~~l~~~v~d~~~- 78 (133)
T cd04033 1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVN-PREHRLLFEVFDENR- 78 (133)
T ss_pred CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEc-CCCCEEEEEEEECCC-
Confidence 48999999999999999999999999999754 579999999999999999999953 445689999999998
Q ss_pred CCCCccceEEEEEcccccCCCc------cceEEEccccc-cccccceeEEEEEE
Q 001703 610 FDQATSLGHAEINFLKHTSTEL------ADMWVSLEGKL-AQSAQSKVHLRIFL 656 (1024)
Q Consensus 610 ~~~dd~lG~~~i~l~~l~~~~~------~~~w~~L~~~~-~~~~~g~l~l~~~~ 656 (1024)
+++|++||++.+++.++..+.. ...||+|++.. .....|+|+|.+.+
T Consensus 79 ~~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~G~l~~~~~~ 132 (133)
T cd04033 79 LTRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSSKSRVKGHLRLYMAY 132 (133)
T ss_pred CCCCCeeEEEEEEHHHCCCcCccccccccchheeeeecCCCCcceeEEEEEEee
Confidence 8999999999999999876543 46899999743 22458999999865
No 35
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.74 E-value=2.3e-17 Score=163.44 Aligned_cols=127 Identities=34% Similarity=0.576 Sum_probs=104.7
Q ss_pred EEEEEEEEeecCC------CCCcEEEEEECCeEEeeecccC-CCCCeEeeEEEEEEecCCCCeEEEEEEecCCCCCCCCC
Q 001703 5 RLYVYVLQGQDLL------AKDSYVKVQIGKHKSKSRILKN-NSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLFGS 77 (1024)
Q Consensus 5 ~L~V~V~~Ar~L~------~~DPyv~v~l~~~~~rT~v~~~-t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~~~f~~~ 77 (1024)
.|+|+|++|++|+ .+||||++++++++.+|+++.+ ++||+|||+|.|.+.++....|.|.|||++ . .+
T Consensus 1 ~L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~~~~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~---~--~~ 75 (150)
T cd04019 1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRV---G--PN 75 (150)
T ss_pred CEEEEEEEeECCCCCCCCCCCCeEEEEEECCEEeeeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEec---C--CC
Confidence 4899999999997 6899999999999999999977 699999999999997666689999999999 3 56
Q ss_pred CCCeeEEEEEeCccccccC-CCCCCCEEEEeecCCC---CCCCCccccEEEEEEEEEecCCee
Q 001703 78 SGELMGRVRVPVSSIAAED-NHMLPPTWFSLETPKT---RKFTNKDCGKILLTISLNGKGHNL 136 (1024)
Q Consensus 78 ~d~~lG~~~i~L~~l~~~~-~~~~~~~W~~L~~~~~---~~~~~~~~G~I~lsl~~~~~~~~l 136 (1024)
++++||++.+||.++..+. .......||+|.+... ++...+.+|+|+|.++|.+..+.+
T Consensus 76 ~dd~lG~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~~~~~~~ 138 (150)
T cd04019 76 KDEPLGRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLDGGYHVL 138 (150)
T ss_pred CCCeEEEEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcccccEEEEEEecCcceEe
Confidence 8999999999999987542 2345789999995532 112246789999999998765443
No 36
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.74 E-value=1.5e-17 Score=162.71 Aligned_cols=106 Identities=23% Similarity=0.294 Sum_probs=93.7
Q ss_pred CeEEEEEEEEeeCCCCCC-CCCCCCcEEEEEEC--C---EEEeeecccCCCCCeEeEEEEEEeecCCCCeEEEEEE-ecC
Q 001703 535 GWVLTVALVEGVNLASSE-MTGLSDPYVVFTCN--G---KTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVF-DFD 607 (1024)
Q Consensus 535 ~~~L~V~vi~a~~L~~~d-~~g~~DPyv~v~~~--~---~~~kT~~~~~t~nP~WnE~f~f~~~~~~~~~L~v~V~-D~d 607 (1024)
.+.|.|+|++|+||++.+ ..|.+||||++++. + .++||+++++|+||+|||+|.|.+. .....|.|+|| |+|
T Consensus 28 ~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~-l~~~~L~v~V~~d~~ 106 (146)
T cd04028 28 KGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVS-PTGKTLQVIVWGDYG 106 (146)
T ss_pred CCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEc-CCCCEEEEEEEeCCC
Confidence 358999999999999874 67899999999994 2 3789999999999999999999965 56779999999 688
Q ss_pred CCCCCCccceEEEEEcccccCCCccceEEEccccc
Q 001703 608 GPFDQATSLGHAEINFLKHTSTELADMWVSLEGKL 642 (1024)
Q Consensus 608 ~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~~~ 642 (1024)
. ++++++||++.|+|+.+..+.....||+|.++.
T Consensus 107 ~-~~~~~~iG~~~i~L~~l~~~~~~~~Wy~L~~~~ 140 (146)
T cd04028 107 R-MDKKVFMGVAQILLDDLDLSNLVIGWYKLFPTS 140 (146)
T ss_pred C-CCCCceEEEEEEEcccccCCCCceeEEecCCcc
Confidence 7 789999999999999998887888999998754
No 37
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.74 E-value=1.4e-17 Score=155.45 Aligned_cols=101 Identities=26% Similarity=0.307 Sum_probs=90.8
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECCEEEeeecccCCCCCeEeEEEEEEeecCCCCeEEEEEEecCCCCCCCccc
Q 001703 537 VLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQATSL 616 (1024)
Q Consensus 537 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~~~~t~nP~WnE~f~f~~~~~~~~~L~v~V~D~d~~~~~dd~l 616 (1024)
.|.|+|++|+||+..+..|.+||||+++++++.++|+++.++.||+|||.|.|.+..+....|.|+|||++. +++|
T Consensus 1 ~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~----~~~i 76 (105)
T cd04050 1 LLFVYLDSAKNLPLAKSTKEPSPYVELTVGKTTQKSKVKERTNNPVWEEGFTFLVRNPENQELEIEVKDDKT----GKSL 76 (105)
T ss_pred CEEEEEeeecCCCCcccCCCCCcEEEEEECCEEEeCccccCCCCCcccceEEEEeCCCCCCEEEEEEEECCC----CCcc
Confidence 379999999999999989999999999999999999999999999999999999766556799999999874 7899
Q ss_pred eEEEEEcccccCCC--ccceEEEcccc
Q 001703 617 GHAEINFLKHTSTE--LADMWVSLEGK 641 (1024)
Q Consensus 617 G~~~i~l~~l~~~~--~~~~w~~L~~~ 641 (1024)
|++.++|.++.... ..+.||+|+++
T Consensus 77 G~~~i~l~~l~~~~~~~~~~w~~L~~~ 103 (105)
T cd04050 77 GSLTLPLSELLKEPDLTLDQPFPLDNS 103 (105)
T ss_pred EEEEEEHHHhhccccceeeeeEecCCC
Confidence 99999999986543 57899999863
No 38
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.74 E-value=2.4e-17 Score=157.76 Aligned_cols=114 Identities=28% Similarity=0.587 Sum_probs=98.8
Q ss_pred EEEEEEEeecCC--CCCcEEEEEECCeEEeeecccCCCCCeEeeEEEEEEecCCCCeEEEEEEecCCCCCCCCCCCCeeE
Q 001703 6 LYVYVLQGQDLL--AKDSYVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLFGSSGELMG 83 (1024)
Q Consensus 6 L~V~V~~Ar~L~--~~DPyv~v~l~~~~~rT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~~~f~~~~d~~lG 83 (1024)
|.|+|++|+||+ .+||||++++++.+.+|++++++.||+|||+|.|.+.......|.++|||++ . . ++++||
T Consensus 2 L~V~Vi~a~~L~~~~~Dpyv~v~l~~~~~kT~v~~~t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d---~--~-~~~~lG 75 (121)
T cd08378 2 LYVRVVKARGLPANSNDPVVEVKLGNYKGSTKAIERTSNPEWNQVFAFSKDRLQGSTLEVSVWDKD---K--A-KDDFLG 75 (121)
T ss_pred EEEEEEEecCCCcccCCCEEEEEECCccccccccCCCCCCccceEEEEEcCCCcCCEEEEEEEeCC---C--C-cCceee
Confidence 899999999999 8999999999999999999999999999999999986567889999999999 3 2 789999
Q ss_pred EEEEeCccccccC--CCCCCCEEEEeecCCCCCCCCccccEEEEEEEE
Q 001703 84 RVRVPVSSIAAED--NHMLPPTWFSLETPKTRKFTNKDCGKILLTISL 129 (1024)
Q Consensus 84 ~~~i~L~~l~~~~--~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~ 129 (1024)
++.++|.++.... .+.....||+|.+... .+.+|+|+|++.|
T Consensus 76 ~~~i~l~~l~~~~~~~~~~~~~W~~L~~~~~----~~~~G~i~l~~~~ 119 (121)
T cd08378 76 GVCFDLSEVPTRVPPDSPLAPQWYRLEDKKG----GRVGGELMLAVWF 119 (121)
T ss_pred eEEEEhHhCcCCCCCCCCCCcceEEccCCCC----CccceEEEEEEEe
Confidence 9999999987642 2334678999984322 4678999999987
No 39
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.74 E-value=1e-17 Score=156.28 Aligned_cols=101 Identities=21% Similarity=0.289 Sum_probs=86.8
Q ss_pred CCeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC----EEEeeecccCCCCCeEeEEEEEEeecC--CCCeEEEEEEecC
Q 001703 534 DGWVLTVALVEGVNLASSEMTGLSDPYVVFTCNG----KTRTSSVQLQTCDPQWHDILEFDAMEE--PPSVLDVEVFDFD 607 (1024)
Q Consensus 534 ~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~----~~~kT~~~~~t~nP~WnE~f~f~~~~~--~~~~L~v~V~D~d 607 (1024)
..+.|+|+|++|+||+ . .|.+||||++.+.. .+++|+++++|+||+|||+|.|.+..+ +...|.|+|||+|
T Consensus 12 ~~~~L~V~vikA~~L~-~--~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~tL~~~V~d~D 88 (118)
T cd08677 12 QKAELHVNILEAENIS-V--DAGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEESLDGTLTLTLRCCD 88 (118)
T ss_pred cCCEEEEEEEEecCCC-C--CCCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHHhCCcEEEEEEEeCC
Confidence 4579999999999999 2 46799999999952 577999999999999999999996432 3458999999999
Q ss_pred CCCCCCccceEEEEEcccccCCCccceEEEc
Q 001703 608 GPFDQATSLGHAEINFLKHTSTELADMWVSL 638 (1024)
Q Consensus 608 ~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L 638 (1024)
+ ++++++||++.+++.++..+.....|..|
T Consensus 89 r-fs~~d~IG~v~l~l~~~~~~~~~~~W~~~ 118 (118)
T cd08677 89 R-FSRHSTLGELRLKLADVSMMLGAAQWVDL 118 (118)
T ss_pred C-CCCCceEEEEEEccccccCCccccchhcC
Confidence 9 99999999999999998666667788765
No 40
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=99.73 E-value=4.1e-17 Score=157.82 Aligned_cols=115 Identities=23% Similarity=0.443 Sum_probs=99.0
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECCEEEeeecccCCCCCeEeEEEEEEeecCCCCeEEEEEEecCCC-------
Q 001703 537 VLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGP------- 609 (1024)
Q Consensus 537 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~~~~t~nP~WnE~f~f~~~~~~~~~L~v~V~D~d~~------- 609 (1024)
.|+|+|++|++|+..|..|.+||||+|++++...+|+++.+++||+|||+|.|.+ ..+...|.|+|||+|..
T Consensus 2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~v~~t~~P~Wne~f~f~~-~~~~~~l~i~v~d~d~~~~~~~~~ 80 (127)
T cd04027 2 KISITVVCAQGLIAKDKTGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFEC-HNSSDRIKVRVWDEDDDIKSRLKQ 80 (127)
T ss_pred eEEEEEEECcCCcCCCCCCCcCcEEEEEECCEeeecceecCCCCCccceEEEEEe-cCCCCEEEEEEEECCCCcccccce
Confidence 5899999999999999999999999999999999999999999999999999985 34467899999999851
Q ss_pred ---CCCCccceEEEEEcccccCCCccceEEEccccccc-cccceeEEEE
Q 001703 610 ---FDQATSLGHAEINFLKHTSTELADMWVSLEGKLAQ-SAQSKVHLRI 654 (1024)
Q Consensus 610 ---~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~-~~~g~l~l~~ 654 (1024)
.+.+++||++.+++.++. +..++||+|+++++. ..+|+|.|++
T Consensus 81 ~~~~~~~~~iG~~~i~l~~~~--~~~~~w~~L~~~~~~~~~~G~i~~~~ 127 (127)
T cd04027 81 KFTRESDDFLGQTIIEVRTLS--GEMDVWYNLEKRTDKSAVSGAIRLHI 127 (127)
T ss_pred eccccCCCcceEEEEEhHHcc--CCCCeEEECccCCCCCcEeEEEEEEC
Confidence 146899999999999875 446799999986543 4588888864
No 41
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.72 E-value=4.9e-17 Score=157.45 Aligned_cols=116 Identities=28% Similarity=0.461 Sum_probs=97.5
Q ss_pred EEEEEEEEeecCC------CCCcEEEEEECCeEEeeecccCCCCCeEeeEEEEEEecC---CCCeEEEEEEecCCCCCCC
Q 001703 5 RLYVYVLQGQDLL------AKDSYVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHNI---DDEELVVSVFQHNDDSGLF 75 (1024)
Q Consensus 5 ~L~V~V~~Ar~L~------~~DPyv~v~l~~~~~rT~v~~~t~nP~WnE~f~f~v~~~---~~~~L~v~V~d~d~~~~f~ 75 (1024)
+|.|+|++|++|+ .+||||+++++++++||++++++.||+|||+|.|.+... ....|.|+|||.+ +
T Consensus 1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~---~-- 75 (127)
T cd04022 1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDR---R-- 75 (127)
T ss_pred CeEEEEEEeeCCCCCCCCCCcCcEEEEEECCEEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCC---C--
Confidence 5899999999998 689999999999999999999999999999999998532 3478999999998 4
Q ss_pred CC-CCCeeEEEEEeCccccccCCCCCCCEEEEeecCCCCCCCCccccEEEEEEEEE
Q 001703 76 GS-SGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTISLN 130 (1024)
Q Consensus 76 ~~-~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~~ 130 (1024)
.+ ++++||++.+++.++... ......||+|++. +.. ...+|+|+|++.+.
T Consensus 76 ~~~~d~~lG~v~i~l~~l~~~--~~~~~~w~~L~~~-~~~--~~~~G~l~l~~~~~ 126 (127)
T cd04022 76 SGRRRSFLGRVRISGTSFVPP--SEAVVQRYPLEKR-GLF--SRVRGEIGLKVYIT 126 (127)
T ss_pred CcCCCCeeeEEEEcHHHcCCC--CCccceEeEeeeC-CCC--CCccEEEEEEEEEc
Confidence 44 789999999999998842 2346899999943 221 45789999999874
No 42
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.72 E-value=6.2e-17 Score=158.34 Aligned_cols=119 Identities=22% Similarity=0.357 Sum_probs=100.2
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCEEEeeecccCCCCCeEeEEEEEEeecC---------CCCeEEEEEEec
Q 001703 536 WVLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAMEE---------PPSVLDVEVFDF 606 (1024)
Q Consensus 536 ~~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~~~~t~nP~WnE~f~f~~~~~---------~~~~L~v~V~D~ 606 (1024)
+.|+|+|++|++|+++|..|.+||||+|.+++++++|+++++|+||.|||.|.|.+... ....|.|+|||+
T Consensus 1 ~~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~ 80 (135)
T cd04017 1 FQLRAYIYQARDLLAADKSGLSDPFARVSFLNQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQ 80 (135)
T ss_pred CEEEEEEEEeecCcCCCCCCCCCCEEEEEECCeeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeC
Confidence 36899999999999999999999999999999999999999999999999999985321 125799999999
Q ss_pred CCCCCCCccceEEEE-EcccccC---CCccceEEEccccccccccceeEEEEEEe
Q 001703 607 DGPFDQATSLGHAEI-NFLKHTS---TELADMWVSLEGKLAQSAQSKVHLRIFLE 657 (1024)
Q Consensus 607 d~~~~~dd~lG~~~i-~l~~l~~---~~~~~~w~~L~~~~~~~~~g~l~l~~~~~ 657 (1024)
|. +++|++||++.+ ++..+.. ......|++|..+. ...|+|.|.+++-
T Consensus 81 d~-~~~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~~~~--~~~Geil~~~~~~ 132 (135)
T cd04017 81 DS-VGKDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIYKGG--QSAGELLAAFELI 132 (135)
T ss_pred cC-CCCCccceEEEeeeeeecccCCCCCCCceEEEeecCC--CchhheeEEeEEE
Confidence 98 799999999997 4444432 46778999998543 3589999999864
No 43
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=99.72 E-value=2.8e-17 Score=158.23 Aligned_cols=105 Identities=24% Similarity=0.340 Sum_probs=92.5
Q ss_pred CCeEEEEEEEEeeCCCCCCC-CCCCCcEEEEEEC-----CEEEeeecccCCCCCeEeEEEEEEeecC--CCCeEEEEEEe
Q 001703 534 DGWVLTVALVEGVNLASSEM-TGLSDPYVVFTCN-----GKTRTSSVQLQTCDPQWHDILEFDAMEE--PPSVLDVEVFD 605 (1024)
Q Consensus 534 ~~~~L~V~vi~a~~L~~~d~-~g~~DPyv~v~~~-----~~~~kT~~~~~t~nP~WnE~f~f~~~~~--~~~~L~v~V~D 605 (1024)
..+.|.|+|++|+||++.+. .|.+||||++++. ..++||+++++++||+|||+|.|.+... ....|.|+|||
T Consensus 13 ~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~l~~~~L~~~V~d 92 (125)
T cd04029 13 KTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQLETRTLQLSVWH 92 (125)
T ss_pred CCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHHHhCCCEEEEEEEE
Confidence 45689999999999999875 5899999999994 2467999999999999999999996432 34589999999
Q ss_pred cCCCCCCCccceEEEEEcccccCCCccceEEEcc
Q 001703 606 FDGPFDQATSLGHAEINFLKHTSTELADMWVSLE 639 (1024)
Q Consensus 606 ~d~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~ 639 (1024)
+|. ++++++||++.|+|..+...+..+.|+||.
T Consensus 93 ~~~-~~~~~~lG~~~i~l~~~~~~~~~~~w~~l~ 125 (125)
T cd04029 93 YDR-FGRNTFLGEVEIPLDSWNFDSQHEECLPLH 125 (125)
T ss_pred CCC-CCCCcEEEEEEEeCCcccccCCcccEEECc
Confidence 998 899999999999999999888899999984
No 44
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=99.72 E-value=1.3e-16 Score=154.21 Aligned_cols=118 Identities=20% Similarity=0.318 Sum_probs=100.7
Q ss_pred CeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCEEEeeecccCCCCCeEeEEEEEEeecCCCCeEEEEEEecCCCCCCCc
Q 001703 535 GWVLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQAT 614 (1024)
Q Consensus 535 ~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~~~~t~nP~WnE~f~f~~~~~~~~~L~v~V~D~d~~~~~dd 614 (1024)
.++|+|+|++|++|+..|..|.+||||++.++++.++|+++++++||+|||.|.|.+ ..+...|.|+|||++. + +|+
T Consensus 2 ~~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~-~~~~~~l~i~V~d~~~-~-~d~ 78 (126)
T cd04046 2 QVVTQVHVHSAEGLSKQDSGGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYR-KKPRSPIKIQVWNSNL-L-CDE 78 (126)
T ss_pred cEEEEEEEEeCcCCCCCCCCCCcCccEEEEECCEEEEeCccCCCCCCcccceEEEEe-cCCCCEEEEEEEECCC-C-CCC
Confidence 468999999999999999999999999999999999999999999999999999984 4557799999999998 5 589
Q ss_pred cceEEEEEcccccCCCccceEEEcccc---ccccccceeEEEEEEe
Q 001703 615 SLGHAEINFLKHTSTELADMWVSLEGK---LAQSAQSKVHLRIFLE 657 (1024)
Q Consensus 615 ~lG~~~i~l~~l~~~~~~~~w~~L~~~---~~~~~~g~l~l~~~~~ 657 (1024)
+||++.+++..+. .....|++|+.. ......|.|.|++.+.
T Consensus 79 ~lG~~~~~l~~~~--~~~~~~~~l~~~~~~~~~~~~G~i~~~~~~~ 122 (126)
T cd04046 79 FLGQATLSADPND--SQTLRTLPLRKRGRDAAGEVPGTISVKVTSS 122 (126)
T ss_pred ceEEEEEecccCC--CcCceEEEcccCCCCCCCCCCCEEEEEEEEc
Confidence 9999999998754 345678899642 3334578999888653
No 45
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=99.72 E-value=3.3e-17 Score=154.28 Aligned_cols=102 Identities=20% Similarity=0.391 Sum_probs=91.0
Q ss_pred EEEEEEEeeCCCCCCC-CCCCCcEEEEEECCEEEeeecccCCCCCeE-eEEEEEEeecC--CCCeEEEEEEecCCCCCCC
Q 001703 538 LTVALVEGVNLASSEM-TGLSDPYVVFTCNGKTRTSSVQLQTCDPQW-HDILEFDAMEE--PPSVLDVEVFDFDGPFDQA 613 (1024)
Q Consensus 538 L~V~vi~a~~L~~~d~-~g~~DPyv~v~~~~~~~kT~~~~~t~nP~W-nE~f~f~~~~~--~~~~L~v~V~D~d~~~~~d 613 (1024)
|.|+|++|+||+.++. .|.+||||++++++++++|+++++++||+| ||+|.|.+... ....|.|+|||+|. +++|
T Consensus 1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~-~~~~ 79 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGSTTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDT-YSAN 79 (110)
T ss_pred CEEEEEEEECCCccccCCCCCCceEEEEECCeeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCC-CCCC
Confidence 5899999999999884 789999999999999999999999999999 99999996433 24689999999998 8999
Q ss_pred ccceEEEEEcccccC---CCccceEEEccc
Q 001703 614 TSLGHAEINFLKHTS---TELADMWVSLEG 640 (1024)
Q Consensus 614 d~lG~~~i~l~~l~~---~~~~~~w~~L~~ 640 (1024)
++||++.++|.++.. +...+.||+|..
T Consensus 80 ~~iG~~~~~l~~l~~~~~~~~~~~w~~l~~ 109 (110)
T cd08688 80 DAIGKVYIDLNPLLLKDSVSQISGWFPIYD 109 (110)
T ss_pred CceEEEEEeHHHhcccCCccccCCeEEccc
Confidence 999999999999876 456889999964
No 46
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=99.72 E-value=2.8e-17 Score=158.36 Aligned_cols=104 Identities=25% Similarity=0.408 Sum_probs=91.9
Q ss_pred CeEEEEEEEEeeCCCCCCCC-CCCCcEEEEEEC-----CEEEeeecccCCCCCeEeEEEEEEeecC--CCCeEEEEEEec
Q 001703 535 GWVLTVALVEGVNLASSEMT-GLSDPYVVFTCN-----GKTRTSSVQLQTCDPQWHDILEFDAMEE--PPSVLDVEVFDF 606 (1024)
Q Consensus 535 ~~~L~V~vi~a~~L~~~d~~-g~~DPyv~v~~~-----~~~~kT~~~~~t~nP~WnE~f~f~~~~~--~~~~L~v~V~D~ 606 (1024)
.+.|.|+|++|+||+++|.. |.+||||++++. ..+++|+++++++||+|||+|.|++... ....|.|+|||+
T Consensus 14 ~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~~l~~~~L~~~V~d~ 93 (125)
T cd08393 14 LRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVEREELPTRVLNLSVWHR 93 (125)
T ss_pred CCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHHHhCCCEEEEEEEeC
Confidence 46899999999999999975 899999999994 2457999999999999999999996432 345899999999
Q ss_pred CCCCCCCccceEEEEEcccccCCCccceEEEcc
Q 001703 607 DGPFDQATSLGHAEINFLKHTSTELADMWVSLE 639 (1024)
Q Consensus 607 d~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~ 639 (1024)
|. ++++++||++.|+|.++...+....||+|+
T Consensus 94 ~~-~~~~~~iG~~~i~L~~~~~~~~~~~W~~L~ 125 (125)
T cd08393 94 DS-LGRNSFLGEVEVDLGSWDWSNTQPTWYPLQ 125 (125)
T ss_pred CC-CCCCcEeEEEEEecCccccCCCCcceEECc
Confidence 98 899999999999999998877888999984
No 47
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.72 E-value=6.4e-17 Score=152.29 Aligned_cols=98 Identities=15% Similarity=0.199 Sum_probs=85.9
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCEEEeeecccCCCCCeEeEEEEEEeecCCCCeEEEEEEecCCCCCCCcc
Q 001703 536 WVLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQATS 615 (1024)
Q Consensus 536 ~~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~~~~t~nP~WnE~f~f~~~~~~~~~L~v~V~D~d~~~~~dd~ 615 (1024)
+.|.|+|++|++|+..+ ..||||+|++++++.+|++.++ .||.|||+|.|.+ ......|.|+|||+|. ..||+
T Consensus 2 ~~L~V~Vv~Ar~L~~~~---~~dPYV~Ik~g~~k~kT~v~~~-~nP~WnE~F~F~~-~~~~~~L~v~V~dkd~--~~DD~ 74 (127)
T cd08394 2 SLLCVLVKKAKLDGAPD---KFNTYVTLKVQNVKSTTIAVRG-SQPCWEQDFMFEI-NRLDLGLVIELWNKGL--IWDTL 74 (127)
T ss_pred ceEEEEEEEeeCCCCCC---CCCCeEEEEECCEEeEeeECCC-CCCceeeEEEEEE-cCCCCEEEEEEEeCCC--cCCCc
Confidence 47999999999997655 5699999999999999999887 4999999999995 4556679999999997 48999
Q ss_pred ceEEEEEcccccCCCcc--ceEEEccc
Q 001703 616 LGHAEINFLKHTSTELA--DMWVSLEG 640 (1024)
Q Consensus 616 lG~~~i~l~~l~~~~~~--~~w~~L~~ 640 (1024)
||++.|+|.++..+... .+||+|++
T Consensus 75 lG~v~i~L~~v~~~~~~~~~~Wy~L~~ 101 (127)
T cd08394 75 VGTVWIPLSTIRQSNEEGPGEWLTLDS 101 (127)
T ss_pred eEEEEEEhHHcccCCCCCCCccEecCh
Confidence 99999999998766544 89999986
No 48
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.72 E-value=8.6e-17 Score=155.76 Aligned_cols=117 Identities=19% Similarity=0.339 Sum_probs=103.4
Q ss_pred EEEeeCCCCCCCCCCCCcEEEEEECCEEEeeecccCCCCCeEeEEEEEEeecC--CCCeEEEEEEecCCCCCCCccceEE
Q 001703 542 LVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAMEE--PPSVLDVEVFDFDGPFDQATSLGHA 619 (1024)
Q Consensus 542 vi~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~~~~t~nP~WnE~f~f~~~~~--~~~~L~v~V~D~d~~~~~dd~lG~~ 619 (1024)
|++|+||+. ..|.+||||+|.+++.+++|+++++++||+|||+|.|.+... ....|.|+|||++. +++|++||++
T Consensus 2 vi~a~~L~~--~~g~~Dpyv~v~~~~~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~-~~~d~~iG~~ 78 (127)
T cd08373 2 VVSLKNLPG--LKGKGDRIAKVTFRGVKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEK-VGRNRLIGSA 78 (127)
T ss_pred eEEeeCCcc--cCCCCCCEEEEEECCEeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCC-CCCCceEEEE
Confidence 789999998 688999999999999999999999999999999999996433 46799999999998 7899999999
Q ss_pred EEEcccccCCCccceEEEccccccccccceeEEEEEEeccCC
Q 001703 620 EINFLKHTSTELADMWVSLEGKLAQSAQSKVHLRIFLENNNG 661 (1024)
Q Consensus 620 ~i~l~~l~~~~~~~~w~~L~~~~~~~~~g~l~l~~~~~~~~~ 661 (1024)
.++|.++..+.....|++|....+....|+|++.+.+.+..+
T Consensus 79 ~~~l~~l~~~~~~~~~~~L~~~~~~~~~~~l~l~~~~~~~~~ 120 (127)
T cd08373 79 TVSLQDLVSEGLLEVTEPLLDSNGRPTGATISLEVSYQPPDG 120 (127)
T ss_pred EEEhhHcccCCceEEEEeCcCCCCCcccEEEEEEEEEeCCCC
Confidence 999999998888899999987655555789999998765543
No 49
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=99.71 E-value=4.7e-17 Score=156.96 Aligned_cols=105 Identities=26% Similarity=0.539 Sum_probs=94.3
Q ss_pred CCeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEC---CEEEeeecccCCCCCeEeEEEEEEeecC--CCCeEEEEEEecCC
Q 001703 534 DGWVLTVALVEGVNLASSEMTGLSDPYVVFTCN---GKTRTSSVQLQTCDPQWHDILEFDAMEE--PPSVLDVEVFDFDG 608 (1024)
Q Consensus 534 ~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~---~~~~kT~~~~~t~nP~WnE~f~f~~~~~--~~~~L~v~V~D~d~ 608 (1024)
..+.|.|+|++|+||++++..|.+||||++.+. .+.++|+++++++||+|||+|.|.+... ....|.|+|||+|.
T Consensus 14 ~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~i~V~d~~~ 93 (124)
T cd08387 14 DMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPPQELPKRTLEVLLYDFDQ 93 (124)
T ss_pred CCCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEeCCHHHhCCCEEEEEEEECCC
Confidence 457899999999999999999999999999993 4578999999999999999999996432 24689999999998
Q ss_pred CCCCCccceEEEEEcccccCCCccceEEEcc
Q 001703 609 PFDQATSLGHAEINFLKHTSTELADMWVSLE 639 (1024)
Q Consensus 609 ~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~ 639 (1024)
+++|++||++.++|.++..++..+.||+|+
T Consensus 94 -~~~~~~iG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08387 94 -FSRDECIGVVELPLAEVDLSEKLDLWRKIQ 123 (124)
T ss_pred -CCCCceeEEEEEecccccCCCCcceEEECc
Confidence 899999999999999998888899999996
No 50
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=99.71 E-value=3.5e-17 Score=154.42 Aligned_cols=101 Identities=21% Similarity=0.365 Sum_probs=88.7
Q ss_pred eEEEEEEEEeeCCCCCCCC-CCCCcEEEEEEC---CEEEeeecccCCCCCeEeEEEEEEeecC---CCCeEEEEEEecCC
Q 001703 536 WVLTVALVEGVNLASSEMT-GLSDPYVVFTCN---GKTRTSSVQLQTCDPQWHDILEFDAMEE---PPSVLDVEVFDFDG 608 (1024)
Q Consensus 536 ~~L~V~vi~a~~L~~~d~~-g~~DPyv~v~~~---~~~~kT~~~~~t~nP~WnE~f~f~~~~~---~~~~L~v~V~D~d~ 608 (1024)
|+|+|+|++|+||+..|.. |.+||||+|++. +...+|+++++++||+|||.|.|.+... ....|.|+|||+|.
T Consensus 1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~ 80 (111)
T cd04041 1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDR 80 (111)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCC
Confidence 6899999999999999988 999999999984 3568999999999999999999986443 35689999999998
Q ss_pred CCCCCccceEEEEEcccccCCCccceEEEccc
Q 001703 609 PFDQATSLGHAEINFLKHTSTELADMWVSLEG 640 (1024)
Q Consensus 609 ~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~ 640 (1024)
+++|++||++.+++.++. ....|+++.-
T Consensus 81 -~~~dd~lG~~~i~l~~l~---~~~~~~~~~~ 108 (111)
T cd04041 81 -FTADDRLGRVEIDLKELI---EDRNWMGRRE 108 (111)
T ss_pred -CCCCCcceEEEEEHHHHh---cCCCCCcccc
Confidence 899999999999999987 3456888853
No 51
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=99.71 E-value=1.8e-16 Score=153.05 Aligned_cols=117 Identities=21% Similarity=0.411 Sum_probs=96.6
Q ss_pred cEEEEEEEEeecCC---CCCcEEEEEECCeE-EeeecccCCCCCeEeeEEEEEEecCCCCeEEEEEEecCCCCCCCCCCC
Q 001703 4 TRLYVYVLQGQDLL---AKDSYVKVQIGKHK-SKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLFGSSG 79 (1024)
Q Consensus 4 ~~L~V~V~~Ar~L~---~~DPyv~v~l~~~~-~rT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~~~f~~~~d 79 (1024)
..|+|+|++|+||+ .+||||+|++++.+ .+|+++ +++||.|||+|.|.+.......+.|.|||.+ + .+++
T Consensus 4 ~~L~V~Vi~A~~L~~~~~~DPYv~v~l~~~~~~kT~v~-~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~---~--~~~d 77 (126)
T cd08400 4 RSLQLNVLEAHKLPVKHVPHPYCVISLNEVKVARTKVR-EGPNPVWSEEFVFDDLPPDVNSFTISLSNKA---K--RSKD 77 (126)
T ss_pred eEEEEEEEEeeCCCCCCCCCeeEEEEECCEeEEEeecC-CCCCCccCCEEEEecCCCCcCEEEEEEEECC---C--CCCC
Confidence 46999999999999 78999999998754 789874 6899999999999864444467999999998 3 5789
Q ss_pred CeeEEEEEeCccccccCCCCCCCEEEEeecCCCCCCCCccccEEEEEEEEEe
Q 001703 80 ELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTISLNG 131 (1024)
Q Consensus 80 ~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~~~ 131 (1024)
++||++.+||..+..+ .....||+|... .. ......|+|+|+++|.+
T Consensus 78 ~~iG~v~i~l~~l~~~---~~~~~W~~L~~~-~~-~~~~~~G~i~l~l~~~~ 124 (126)
T cd08400 78 SEIAEVTVQLSKLQNG---QETDEWYPLSSA-SP-LKGGEWGSLRIRARYSH 124 (126)
T ss_pred CeEEEEEEEHhHccCC---CcccEeEEcccC-CC-CCCCcCcEEEEEEEEEc
Confidence 9999999999998864 346889999843 22 12567899999999975
No 52
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.71 E-value=4e-17 Score=152.30 Aligned_cols=98 Identities=17% Similarity=0.334 Sum_probs=84.8
Q ss_pred CCcEEEEEEEEeecCC---CCCcEEEEEECC----eEEeeecccCCCCCeEeeEEEEEEe--cCCCCeEEEEEEecCCCC
Q 001703 2 VSTRLYVYVLQGQDLL---AKDSYVKVQIGK----HKSKSRILKNNSNPVWNEEFVFRVH--NIDDEELVVSVFQHNDDS 72 (1024)
Q Consensus 2 ~~~~L~V~V~~Ar~L~---~~DPyv~v~l~~----~~~rT~v~~~t~nP~WnE~f~f~v~--~~~~~~L~v~V~d~d~~~ 72 (1024)
..+.|.|+|++|+||+ .+||||++++.. .+++|+++++|+||+|||+|.|+++ +.....|.|+|||+|
T Consensus 12 ~~~~L~V~vikA~~L~~~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~tL~~~V~d~D--- 88 (118)
T cd08677 12 QKAELHVNILEAENISVDAGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEESLDGTLTLTLRCCD--- 88 (118)
T ss_pred cCCEEEEEEEEecCCCCCCCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHHhCCcEEEEEEEeCC---
Confidence 3578999999999998 799999999963 4689999999999999999999988 677889999999999
Q ss_pred CCCCCCCCeeEEEEEeCccccccCCCCCCCEEEEe
Q 001703 73 GLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSL 107 (1024)
Q Consensus 73 ~f~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L 107 (1024)
+ .+++++||++.+++.++....+ ...|..|
T Consensus 89 r--fs~~d~IG~v~l~l~~~~~~~~---~~~W~~~ 118 (118)
T cd08677 89 R--FSRHSTLGELRLKLADVSMMLG---AAQWVDL 118 (118)
T ss_pred C--CCCCceEEEEEEccccccCCcc---ccchhcC
Confidence 6 4799999999999998865432 4567654
No 53
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=99.71 E-value=6.8e-17 Score=151.02 Aligned_cols=94 Identities=15% Similarity=0.211 Sum_probs=83.4
Q ss_pred eEEEEEEEEeeCCCCCCCC----CCCCcEEEEEECCEEEeeecccCCCCCeEeEEEEEEeecC-CCCeEEEEEEecCCCC
Q 001703 536 WVLTVALVEGVNLASSEMT----GLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAMEE-PPSVLDVEVFDFDGPF 610 (1024)
Q Consensus 536 ~~L~V~vi~a~~L~~~d~~----g~~DPyv~v~~~~~~~kT~~~~~t~nP~WnE~f~f~~~~~-~~~~L~v~V~D~d~~~ 610 (1024)
|+|.|+|++|+||++.+.. +.+||||+|.++++++||+++++++||+|||.|.|.+... ....|.|+|||+|. +
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~~~~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d~-~ 79 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRRVFRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKDK-F 79 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECCEeEeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECCC-C
Confidence 6899999999999998742 4589999999999999999999999999999999997543 33489999999998 8
Q ss_pred CCCccceEEEEEcccccCCC
Q 001703 611 DQATSLGHAEINFLKHTSTE 630 (1024)
Q Consensus 611 ~~dd~lG~~~i~l~~l~~~~ 630 (1024)
++|++||++.++|.++..+.
T Consensus 80 ~~dd~IG~~~l~L~~l~~~~ 99 (108)
T cd04039 80 SFNDYVATGSLSVQELLNAA 99 (108)
T ss_pred CCCcceEEEEEEHHHHHhhC
Confidence 99999999999999987654
No 54
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.70 E-value=1.3e-16 Score=152.53 Aligned_cols=112 Identities=25% Similarity=0.405 Sum_probs=92.3
Q ss_pred EEEEEEEEeec---CC------CCCcEEEEEECCeEEeeecccCCCCCeEeeEEEEEEecCCCCeEEEEEEecCCCCCC-
Q 001703 5 RLYVYVLQGQD---LL------AKDSYVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGL- 74 (1024)
Q Consensus 5 ~L~V~V~~Ar~---L~------~~DPyv~v~l~~~~~rT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~~~f- 74 (1024)
.|.|+|++|+| |. .+||||+|++++++.||+++++++||+|||+|.|.+.. ....|.|+|||++ .+
T Consensus 1 ~L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~~~~rTk~~~~~~nP~WnE~f~f~v~~-~~~~l~v~V~d~d---~~~ 76 (126)
T cd08379 1 ILEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPVYD-PCTVLTVGVFDNS---QSH 76 (126)
T ss_pred CeEEEEEEeECCccccccccCCCCCeeEEEEECCEEeEcCcccCCCCCcceeEEEEEecC-CCCEEEEEEEECC---Ccc
Confidence 48999999999 55 78999999999999999999999999999999999853 4468999999998 31
Q ss_pred ---CCCCCCeeEEEEEeCccccccCCCCCCCEEEEeecCCCCCCCCccccEEEE
Q 001703 75 ---FGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILL 125 (1024)
Q Consensus 75 ---~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~l 125 (1024)
...+|++||++.++|..+..+. ....||+|.....+. .+..|+|++
T Consensus 77 ~~~~~~~dd~lG~~~i~l~~l~~~~---~~~~~~~L~~~~~~~--~~~~g~l~~ 125 (126)
T cd08379 77 WKEAVQPDVLIGKVRIRLSTLEDDR---VYAHSYPLLSLNPSG--VKKMGELEC 125 (126)
T ss_pred ccccCCCCceEEEEEEEHHHccCCC---EEeeEEEeEeCCCCC--ccCCcEEEe
Confidence 0138999999999999988642 367899999544322 567888875
No 55
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=99.70 E-value=9e-17 Score=154.97 Aligned_cols=105 Identities=26% Similarity=0.450 Sum_probs=93.9
Q ss_pred CCeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEC---CEEEeeecccCCCCCeEeEEEEEEeecC--CCCeEEEEEEecCC
Q 001703 534 DGWVLTVALVEGVNLASSEMTGLSDPYVVFTCN---GKTRTSSVQLQTCDPQWHDILEFDAMEE--PPSVLDVEVFDFDG 608 (1024)
Q Consensus 534 ~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~---~~~~kT~~~~~t~nP~WnE~f~f~~~~~--~~~~L~v~V~D~d~ 608 (1024)
..+.|.|+|++|+||++++..|.+||||++.+. ++.++|+++++++||+|||+|.|.+... ....|.|+|||+|.
T Consensus 14 ~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~V~d~d~ 93 (124)
T cd08385 14 QSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSELGNKTLVFSVYDFDR 93 (124)
T ss_pred CCCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHHHhCCCEEEEEEEeCCC
Confidence 456899999999999999999999999999984 3577999999999999999999996432 24589999999998
Q ss_pred CCCCCccceEEEEEcccccCCCccceEEEcc
Q 001703 609 PFDQATSLGHAEINFLKHTSTELADMWVSLE 639 (1024)
Q Consensus 609 ~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~ 639 (1024)
++++++||++.++|.++..+...+.|++|+
T Consensus 94 -~~~~~~lG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08385 94 -FSKHDLIGEVRVPLLTVDLGHVTEEWRDLE 123 (124)
T ss_pred -CCCCceeEEEEEecCcccCCCCcceEEEcc
Confidence 899999999999999998888899999986
No 56
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=99.70 E-value=9.4e-17 Score=153.43 Aligned_cols=111 Identities=25% Similarity=0.468 Sum_probs=95.2
Q ss_pred cEEEEEEEEeecCC------CCCcEEEEEECCeEEeeecccC-CCCCeEeeEEEEEEecCCCCeEEEEEEecCCCCCCCC
Q 001703 4 TRLYVYVLQGQDLL------AKDSYVKVQIGKHKSKSRILKN-NSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLFG 76 (1024)
Q Consensus 4 ~~L~V~V~~Ar~L~------~~DPyv~v~l~~~~~rT~v~~~-t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~~~f~~ 76 (1024)
+.|+|+|++|++|+ .+||||++++++.+++|+++++ ++||+|||+|.|.+.....+.|.|+|||++ . .
T Consensus 1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~---~--~ 75 (118)
T cd08681 1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDD---K--R 75 (118)
T ss_pred CEEEEEEEEccCCCCCCcCCCCCceEEEEECCCccccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCC---C--C
Confidence 57999999999998 6899999999998999998865 799999999999997556789999999998 3 3
Q ss_pred CCCCeeEEEEEeCccccccCCCCCCCEEEEeecCCCCCCCCccccEEEEEEEE
Q 001703 77 SSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTISL 129 (1024)
Q Consensus 77 ~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~ 129 (1024)
+ +++||++.+++.++...+ ....|++|... ....|+|+|+++|
T Consensus 76 ~-~~~iG~~~~~l~~~~~~~---~~~~w~~L~~~------~~~~G~i~l~l~f 118 (118)
T cd08681 76 K-PDLIGDTEVDLSPALKEG---EFDDWYELTLK------GRYAGEVYLELTF 118 (118)
T ss_pred C-CcceEEEEEecHHHhhcC---CCCCcEEeccC------CcEeeEEEEEEEC
Confidence 4 899999999999987642 25789999832 3478999999986
No 57
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=99.70 E-value=1.7e-16 Score=152.23 Aligned_cols=114 Identities=29% Similarity=0.514 Sum_probs=97.6
Q ss_pred EEEEEEEEeecCC------CCCcEEEEEECC-eEEeeecccCCCCCeEeeEEEEEEecCCCCeEEEEEEecCCCCCCCCC
Q 001703 5 RLYVYVLQGQDLL------AKDSYVKVQIGK-HKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLFGS 77 (1024)
Q Consensus 5 ~L~V~V~~Ar~L~------~~DPyv~v~l~~-~~~rT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~~~f~~~ 77 (1024)
+|+|+|++|++|+ .+||||++++++ ...+|++++++.||+|||+|.|.+. .....|.|+|||++ . .+
T Consensus 1 ~L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~f~v~-~~~~~l~~~v~D~d---~--~~ 74 (121)
T cd04042 1 QLDIHLKEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIE-DVTQPLYIKVFDYD---R--GL 74 (121)
T ss_pred CeEEEEEEeeCCCCcCCCCCCCCeEEEEECCEEEEEeeeccCCCCCccceeEEEEec-CCCCeEEEEEEeCC---C--CC
Confidence 5899999999998 789999999987 5689999999999999999999985 44688999999999 3 57
Q ss_pred CCCeeEEEEEeCccccccCCCCCCCEEEEeecCCCCCCCCccccEEEEEEEEEe
Q 001703 78 SGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTISLNG 131 (1024)
Q Consensus 78 ~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~~~ 131 (1024)
++++||++.++|.++..+ .....|++|.+... .+..|+|+|.++|.|
T Consensus 75 ~~~~iG~~~~~l~~l~~~---~~~~~~~~L~~~~~----~~~~G~l~l~~~~~~ 121 (121)
T cd04042 75 TDDFMGSAFVDLSTLELN---KPTEVKLKLEDPNS----DEDLGYISLVVTLTP 121 (121)
T ss_pred CCcceEEEEEEHHHcCCC---CCeEEEEECCCCCC----ccCceEEEEEEEECC
Confidence 899999999999999864 23678999984332 357899999999854
No 58
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=99.70 E-value=8.9e-17 Score=155.01 Aligned_cols=105 Identities=19% Similarity=0.287 Sum_probs=90.7
Q ss_pred CCeEEEEEEEEeeCCCCCCCC-CCCCcEEEEEEC-----CEEEeeecccCCCCCeEeEEEEEEeecC--CCCeEEEEEEe
Q 001703 534 DGWVLTVALVEGVNLASSEMT-GLSDPYVVFTCN-----GKTRTSSVQLQTCDPQWHDILEFDAMEE--PPSVLDVEVFD 605 (1024)
Q Consensus 534 ~~~~L~V~vi~a~~L~~~d~~-g~~DPyv~v~~~-----~~~~kT~~~~~t~nP~WnE~f~f~~~~~--~~~~L~v~V~D 605 (1024)
..+.|.|+|++|+||++++.. |.+||||++++. ..++||+++++++||+|||+|.|.+... ....|.|.|||
T Consensus 13 ~~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~~l~~~~L~v~V~~ 92 (128)
T cd08392 13 RTSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEADLLSSRQLQVSVWH 92 (128)
T ss_pred CCCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCHHHhCCcEEEEEEEe
Confidence 446899999999999999875 999999999994 3477999999999999999999996432 24699999999
Q ss_pred cCCCCCCCccceEEEEEcccccCC---CccceEEEcc
Q 001703 606 FDGPFDQATSLGHAEINFLKHTST---ELADMWVSLE 639 (1024)
Q Consensus 606 ~d~~~~~dd~lG~~~i~l~~l~~~---~~~~~w~~L~ 639 (1024)
++. ++++++||++.|+|.++... .....||+|.
T Consensus 93 ~~~-~~~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l~ 128 (128)
T cd08392 93 SRT-LKRRVFLGEVLIPLADWDFEDTDSQRFLWYPLN 128 (128)
T ss_pred CCC-CcCcceEEEEEEEcCCcccCCCCccccceEECc
Confidence 998 89999999999999997543 4678899984
No 59
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=99.70 E-value=1.3e-16 Score=153.41 Aligned_cols=114 Identities=22% Similarity=0.395 Sum_probs=96.1
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEEC-CEEEeeecccCCCCCeEeEEEEEEeecCCCCeEEEEEEecCCCCCC--Cc
Q 001703 538 LTVALVEGVNLASSEMTGLSDPYVVFTCN-GKTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQ--AT 614 (1024)
Q Consensus 538 L~V~vi~a~~L~~~d~~g~~DPyv~v~~~-~~~~kT~~~~~t~nP~WnE~f~f~~~~~~~~~L~v~V~D~d~~~~~--dd 614 (1024)
|+|+|++|+||+..+..|.+||||++.++ .+.++|+++++++||+|||+|.|.+.. ...|.|+|||++. +++ |+
T Consensus 2 l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~--~~~l~i~V~d~~~-~~~~~d~ 78 (123)
T cd08382 2 VRLTVLCADGLAKRDLFRLPDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLTVGP--SSIITIQVFDQKK-FKKKDQG 78 (123)
T ss_pred eEEEEEEecCCCccCCCCCCCcEEEEEECCccceEccEEcCCCCCcccceEEEEeCC--CCEEEEEEEECCC-CCCCCCc
Confidence 78999999999999999999999999996 678899999999999999999999633 6799999999998 665 58
Q ss_pred cceEEEEEcccccCCC-ccceEEEcccccc---ccccceeEEEE
Q 001703 615 SLGHAEINFLKHTSTE-LADMWVSLEGKLA---QSAQSKVHLRI 654 (1024)
Q Consensus 615 ~lG~~~i~l~~l~~~~-~~~~w~~L~~~~~---~~~~g~l~l~~ 654 (1024)
+||++.+++.++.... ....|++|..... ....|+|.+++
T Consensus 79 ~lG~~~i~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~G~v~~~~ 122 (123)
T cd08382 79 FLGCVRIRANAVLPLKDTGYQRLDLRKLKKSDNLSVRGKIVVSL 122 (123)
T ss_pred eEeEEEEEHHHccccCCCccceeEeecCCCCCCceEeeEEEEEe
Confidence 9999999999986544 4478999976332 23367777665
No 60
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=99.69 E-value=2.1e-16 Score=153.38 Aligned_cols=120 Identities=21% Similarity=0.393 Sum_probs=100.9
Q ss_pred cEEEEEEEEeecCC--------CCCcEEEEEECCeEEeeecccCCCCCeEeeEEEEEEecCCCCeEEEEEEecCCCCCCC
Q 001703 4 TRLYVYVLQGQDLL--------AKDSYVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLF 75 (1024)
Q Consensus 4 ~~L~V~V~~Ar~L~--------~~DPyv~v~l~~~~~rT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~~~f~ 75 (1024)
+.|+|+|++|+||+ .+||||++++++.+.+|+++++++||.|||+|.|.+.......|.|+|||++ .
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~~~~kT~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~---~-- 75 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKD---R-- 75 (128)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEECCEEEecceecCCcCCccCCcEEEEecCCCCCEEEEEEEECC---C--
Confidence 57999999999997 4799999999999999999999999999999999996556789999999999 3
Q ss_pred CCCCCeeEEEEEeCccccccCCCCCCCEEEEeecCCCCCCCCccccEEEEEEEE
Q 001703 76 GSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTISL 129 (1024)
Q Consensus 76 ~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~ 129 (1024)
.+++++||++.++|.++...+.......||+|.....+ ......|+|+|.++|
T Consensus 76 ~~~~~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~~-~~~~~~G~i~l~~~~ 128 (128)
T cd04024 76 FAGKDYLGEFDIALEEVFADGKTGQSDKWITLKSTRPG-KTSVVSGEIHLQFSW 128 (128)
T ss_pred CCCCCcceEEEEEHHHhhcccccCccceeEEccCcccC-ccccccceEEEEEEC
Confidence 56899999999999998753223346799999843222 235679999999875
No 61
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=99.69 E-value=2.1e-16 Score=154.26 Aligned_cols=114 Identities=25% Similarity=0.526 Sum_probs=96.7
Q ss_pred CcEEEEEEEEeecCC------CCCcEEEEEECCeEEeeecccCCCCCeEeeEEEEEEecCCCCeEEEEEEecCCCCCCCC
Q 001703 3 STRLYVYVLQGQDLL------AKDSYVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLFG 76 (1024)
Q Consensus 3 ~~~L~V~V~~Ar~L~------~~DPyv~v~l~~~~~rT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~~~f~~ 76 (1024)
-+.|+|+|++|++|+ .+||||++++++..++|++++++.||.|||+|.|.+.+.....|.|+|||.+ . .
T Consensus 14 ~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~~~~kT~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d---~--~ 88 (136)
T cd08375 14 IGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDRD---F--F 88 (136)
T ss_pred cEEEEEEEEEeeCCCCCCCCCCcCcEEEEEECCEeeeccccCCCCCCccCceEEEEecCccCCEEEEEEEECC---C--C
Confidence 378999999999998 7899999999999999999999999999999999997667789999999999 3 5
Q ss_pred CCCCeeEEEEEeCccccccCC--CCCCCEEEEeecCCCCCCCCccccEEEEEEEE
Q 001703 77 SSGELMGRVRVPVSSIAAEDN--HMLPPTWFSLETPKTRKFTNKDCGKILLTISL 129 (1024)
Q Consensus 77 ~~d~~lG~~~i~L~~l~~~~~--~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~ 129 (1024)
++|++||++.++|.++..... ......|..|. ....|+|+|++.+
T Consensus 89 ~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~--------~~~~g~i~l~~~~ 135 (136)
T cd08375 89 SPDDFLGRTEIRVADILKETKESKGPITKRLLLH--------EVPTGEVVVKLDL 135 (136)
T ss_pred CCCCeeEEEEEEHHHhccccccCCCcEEEEeccc--------cccceeEEEEEEe
Confidence 789999999999999886321 22334556554 4578999999876
No 62
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=99.69 E-value=2.5e-16 Score=150.63 Aligned_cols=112 Identities=19% Similarity=0.396 Sum_probs=94.3
Q ss_pred EEEEEEEeecCC-------CCCcEEEEEECCe-EEeeecccCCCCCeEeeEEEEEEecCCCCeEEEEEEecCCCCCCCCC
Q 001703 6 LYVYVLQGQDLL-------AKDSYVKVQIGKH-KSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLFGS 77 (1024)
Q Consensus 6 L~V~V~~Ar~L~-------~~DPyv~v~l~~~-~~rT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~~~f~~~ 77 (1024)
|.|+|++|+||+ .+||||.|++++. .++|+++++|+||+|||+|.|.++ .....|.|.|||++ + .+
T Consensus 2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~~~~~kT~v~~kt~~P~WnE~F~f~v~-~~~~~l~~~v~d~~---~--~~ 75 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIP-RTFRHLSFYIYDRD---V--LR 75 (121)
T ss_pred eEEEEEEccCCCCCCCCCCCcCcEEEEEECCccEEEeeEEECCCCCccCCeEEEEcC-CCCCEEEEEEEECC---C--CC
Confidence 789999999998 4799999999765 589999999999999999999995 44579999999999 4 57
Q ss_pred CCCeeEEEEEeCccccccCCCCCCCEEEEeecCCCCCCCCccccEEEEEEEE
Q 001703 78 SGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTISL 129 (1024)
Q Consensus 78 ~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~ 129 (1024)
++++||++.++|.++..+ .....||+|+ +.... .+.+|+|+|++++
T Consensus 76 ~~~~iG~~~i~l~~l~~~---~~~~~w~~L~-~~~~~--~~~~G~i~l~~~~ 121 (121)
T cd08401 76 RDSVIGKVAIKKEDLHKY---YGKDTWFPLQ-PVDAD--SEVQGKVHLELRL 121 (121)
T ss_pred CCceEEEEEEEHHHccCC---CCcEeeEEEE-ccCCC--CcccEEEEEEEEC
Confidence 899999999999998864 3468899999 43222 3468999999864
No 63
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.69 E-value=1.4e-16 Score=153.92 Aligned_cols=104 Identities=21% Similarity=0.391 Sum_probs=89.7
Q ss_pred CCeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----EEEeeecccCCCCCeEeEEEEEEeecC---CCCeEEEEEEe
Q 001703 534 DGWVLTVALVEGVNLASSEMTGLSDPYVVFTCNG-----KTRTSSVQLQTCDPQWHDILEFDAMEE---PPSVLDVEVFD 605 (1024)
Q Consensus 534 ~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~-----~~~kT~~~~~t~nP~WnE~f~f~~~~~---~~~~L~v~V~D 605 (1024)
..+.|.|+|++|+||+..+..|.+||||+|.+.+ .+++|+++++++||+|||+|.|.+... ....|.|+|||
T Consensus 14 ~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~l~~~V~d 93 (125)
T cd04031 14 VTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRETLKERTLEVTVWD 93 (125)
T ss_pred CCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHHhCCCEEEEEEEe
Confidence 3468999999999999999999999999999963 577999999999999999999985332 35689999999
Q ss_pred cCCCCCCCccceEEEEEcccccCCCccceEEEcc
Q 001703 606 FDGPFDQATSLGHAEINFLKHTSTELADMWVSLE 639 (1024)
Q Consensus 606 ~d~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~ 639 (1024)
+|. ++++++||++.++|.+.. ......||+|+
T Consensus 94 ~~~-~~~~~~iG~~~i~l~~~~-~~~~~~W~~L~ 125 (125)
T cd04031 94 YDR-DGENDFLGEVVIDLADAL-LDDEPHWYPLQ 125 (125)
T ss_pred CCC-CCCCcEeeEEEEeccccc-ccCCcceEECc
Confidence 998 789999999999999833 33457899995
No 64
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=99.69 E-value=1.1e-16 Score=152.52 Aligned_cols=102 Identities=21% Similarity=0.291 Sum_probs=88.8
Q ss_pred CeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEC-----CEEEeeecccCCCCCeEeEEEEEEeecC-CCCeEEEEEEecCC
Q 001703 535 GWVLTVALVEGVNLASSEMTGLSDPYVVFTCN-----GKTRTSSVQLQTCDPQWHDILEFDAMEE-PPSVLDVEVFDFDG 608 (1024)
Q Consensus 535 ~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~-----~~~~kT~~~~~t~nP~WnE~f~f~~~~~-~~~~L~v~V~D~d~ 608 (1024)
.+.|.|+|++|+||++++ .|.+||||++++. ..+++|+++++++||+|||+|.|.+... ....|.|+|||+|.
T Consensus 11 ~~~L~V~Vi~ar~L~~~~-~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~~~ 89 (119)
T cd08685 11 NRKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLVTVWNKLS 89 (119)
T ss_pred CCEEEEEEEEEECCCCCC-CCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhCCEEEEEEECCCC
Confidence 468999999999999999 8999999999995 2467999999999999999999996332 23579999999997
Q ss_pred CCC-CCccceEEEEEcccccCCCccceEEEc
Q 001703 609 PFD-QATSLGHAEINFLKHTSTELADMWVSL 638 (1024)
Q Consensus 609 ~~~-~dd~lG~~~i~l~~l~~~~~~~~w~~L 638 (1024)
.+ ++++||++.|+|.++..+...+.||.|
T Consensus 90 -~~~~~~~lG~~~i~l~~~~~~~~~~~Wy~l 119 (119)
T cd08685 90 -KSRDSGLLGCMSFGVKSIVNQKEISGWYYL 119 (119)
T ss_pred -CcCCCEEEEEEEecHHHhccCccccceEeC
Confidence 55 478999999999999877778999987
No 65
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=99.69 E-value=1.9e-16 Score=153.13 Aligned_cols=106 Identities=18% Similarity=0.252 Sum_probs=90.4
Q ss_pred CCeEEEEEEEEeeCCCCCCCC-CCCCcEEEEEEC---CEEEeeecccCCCCCeEeEEEEEEeecC---CCCeEEEEEEec
Q 001703 534 DGWVLTVALVEGVNLASSEMT-GLSDPYVVFTCN---GKTRTSSVQLQTCDPQWHDILEFDAMEE---PPSVLDVEVFDF 606 (1024)
Q Consensus 534 ~~~~L~V~vi~a~~L~~~d~~-g~~DPyv~v~~~---~~~~kT~~~~~t~nP~WnE~f~f~~~~~---~~~~L~v~V~D~ 606 (1024)
..+.|+|+|++|+||++.+.. |.+||||++.+. +++.||+++++++||+|||+|.|..... ....|.|+|||+
T Consensus 14 ~~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~~~~~~L~~~V~d~ 93 (128)
T cd08388 14 EKKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYNQLQDLSLHFAVLSF 93 (128)
T ss_pred CCCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHHHhCCCEEEEEEEEc
Confidence 346899999999999999876 999999999985 4567999999999999999999942221 234799999999
Q ss_pred CCCCCCCccceEEEEEcccccCC--CccceEEEccc
Q 001703 607 DGPFDQATSLGHAEINFLKHTST--ELADMWVSLEG 640 (1024)
Q Consensus 607 d~~~~~dd~lG~~~i~l~~l~~~--~~~~~w~~L~~ 640 (1024)
|. +++|++||++.|+|.++... +....|.+|++
T Consensus 94 d~-~~~d~~lG~~~i~L~~l~~~~~~~~~~~~~~~~ 128 (128)
T cd08388 94 DR-YSRDDVIGEVVCPLAGADLLNEGELLVSREIQP 128 (128)
T ss_pred CC-CCCCceeEEEEEeccccCCCCCceEEEEEeccC
Confidence 98 89999999999999998554 66788999874
No 66
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.68 E-value=2.4e-16 Score=152.32 Aligned_cols=106 Identities=24% Similarity=0.494 Sum_probs=93.9
Q ss_pred CCeEEEEEEEEeeCCCCCCCCCCCCcEEEEEE---CCEEEeeecccCCCCCeEeEEEEEEeecC---CCCeEEEEEEecC
Q 001703 534 DGWVLTVALVEGVNLASSEMTGLSDPYVVFTC---NGKTRTSSVQLQTCDPQWHDILEFDAMEE---PPSVLDVEVFDFD 607 (1024)
Q Consensus 534 ~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~~---~~~~~kT~~~~~t~nP~WnE~f~f~~~~~---~~~~L~v~V~D~d 607 (1024)
..+.|.|+|++|+||+..+..|.+||||++.+ ++++.+|+++++++||+|||+|.|.+... ....|.++|||+|
T Consensus 14 ~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~d~d 93 (125)
T cd08386 14 QESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQVLDYD 93 (125)
T ss_pred CCCEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHHhCCCEEEEEEEeCC
Confidence 35689999999999999999999999999999 35678999999999999999999974322 2357999999999
Q ss_pred CCCCCCccceEEEEEcccccCCCccceEEEccc
Q 001703 608 GPFDQATSLGHAEINFLKHTSTELADMWVSLEG 640 (1024)
Q Consensus 608 ~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~ 640 (1024)
. ++++++||++.++|.++..+...+.|++|.+
T Consensus 94 ~-~~~~~~iG~~~i~l~~l~~~~~~~~W~~l~~ 125 (125)
T cd08386 94 R-FSRNDPIGEVSLPLNKVDLTEEQTFWKDLKP 125 (125)
T ss_pred C-CcCCcEeeEEEEecccccCCCCcceEEecCC
Confidence 8 8999999999999999998888999999963
No 67
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=99.68 E-value=4.9e-16 Score=147.99 Aligned_cols=109 Identities=27% Similarity=0.519 Sum_probs=95.8
Q ss_pred EEEEEEEEeecCC------CCCcEEEEEECCeEEeeecccCCCCCeEeeEEEEEEecCCCCeEEEEEEecCCCCCCCCCC
Q 001703 5 RLYVYVLQGQDLL------AKDSYVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLFGSS 78 (1024)
Q Consensus 5 ~L~V~V~~Ar~L~------~~DPyv~v~l~~~~~rT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~~~f~~~~ 78 (1024)
.|+|+|++|++|+ .+||||++++++.+.+|+++++++||.|||+|.|.+.......|.|+|||.+ . .++
T Consensus 1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~---~--~~~ 75 (116)
T cd08376 1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKD---T--GKK 75 (116)
T ss_pred CEEEEEEEEECCCCCCCCCCCCcEEEEEECCEeEecccccCCCCCceeEEEEEEecCCCCCEEEEEEEECC---C--CCC
Confidence 3789999999998 6899999999999999999999999999999999986555789999999999 3 568
Q ss_pred CCeeEEEEEeCccccccCCCCCCCEEEEeecCCCCCCCCccccEEEEEEEEE
Q 001703 79 GELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTISLN 130 (1024)
Q Consensus 79 d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~~ 130 (1024)
+++||++.++|.++..+ .....|++|. + ..|+|++.+.|.
T Consensus 76 ~~~iG~~~~~l~~l~~~---~~~~~w~~L~-~--------~~G~~~~~~~~~ 115 (116)
T cd08376 76 DEFIGRCEIDLSALPRE---QTHSLELELE-D--------GEGSLLLLLTLT 115 (116)
T ss_pred CCeEEEEEEeHHHCCCC---CceEEEEEcc-C--------CCcEEEEEEEec
Confidence 99999999999998764 3478899998 2 259999998874
No 68
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.68 E-value=2.6e-16 Score=155.25 Aligned_cols=102 Identities=21% Similarity=0.386 Sum_probs=89.0
Q ss_pred EEEEEEEeeCCCCCCCCC--------------CCCcEEEEEECCEEEeeecccCCCCCeEeEEEEEEee-cCCCCeEEEE
Q 001703 538 LTVALVEGVNLASSEMTG--------------LSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAM-EEPPSVLDVE 602 (1024)
Q Consensus 538 L~V~vi~a~~L~~~d~~g--------------~~DPyv~v~~~~~~~kT~~~~~t~nP~WnE~f~f~~~-~~~~~~L~v~ 602 (1024)
|.|+|++|++|+.+|..+ .+||||+|.+++++.+|+++++++||+|||+|.|.+. +.....|.|+
T Consensus 2 ~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~~~kT~v~~~t~nPvWNE~f~f~v~~p~~~~~l~~~ 81 (151)
T cd04018 2 FIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQKVKTSVKKNSYNPEWNEQIVFPEMFPPLCERIKIQ 81 (151)
T ss_pred eEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECCEeeecceEcCCCCCCcceEEEEEeeCCCcCCEEEEE
Confidence 789999999999998554 7899999999999999999999999999999999964 3445699999
Q ss_pred EEecCCCCCCCccceEEEEEcccccCCCc-------cceEEEccc
Q 001703 603 VFDFDGPFDQATSLGHAEINFLKHTSTEL-------ADMWVSLEG 640 (1024)
Q Consensus 603 V~D~d~~~~~dd~lG~~~i~l~~l~~~~~-------~~~w~~L~~ 640 (1024)
|||+|. +++|++||++.|+|.++...+. ...|+.|.+
T Consensus 82 v~D~d~-~~~dd~iG~~~l~l~~l~~~~~~~~lp~~~p~W~~lyg 125 (151)
T cd04018 82 IRDWDR-VGNDDVIGTHFIDLSKISNSGDEGFLPTFGPSFVNLYG 125 (151)
T ss_pred EEECCC-CCCCCEEEEEEEeHHHhccCCccccCCccCceEEEeec
Confidence 999998 7899999999999999866542 357777765
No 69
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.67 E-value=7.9e-16 Score=150.53 Aligned_cols=117 Identities=21% Similarity=0.509 Sum_probs=96.5
Q ss_pred EEEEEEEEeecCC------CCCcEEEEEECCeEEeeecccCCCCCeEeeEEEEEEecC---------CCCeEEEEEEecC
Q 001703 5 RLYVYVLQGQDLL------AKDSYVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHNI---------DDEELVVSVFQHN 69 (1024)
Q Consensus 5 ~L~V~V~~Ar~L~------~~DPyv~v~l~~~~~rT~v~~~t~nP~WnE~f~f~v~~~---------~~~~L~v~V~d~d 69 (1024)
+|+|+|++|++|+ .+||||+|++++.+++|+++++++||.|||+|.|.+... ....|.|+|||+|
T Consensus 2 ~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~d 81 (135)
T cd04017 2 QLRAYIYQARDLLAADKSGLSDPFARVSFLNQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQD 81 (135)
T ss_pred EEEEEEEEeecCcCCCCCCCCCCEEEEEECCeeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeCc
Confidence 6899999999998 789999999999999999999999999999999984321 2367999999999
Q ss_pred CCCCCCCCCCCeeEEEEE-eCccccccCCCCCCCEEEEeecCCCCCCCCccccEEEEEEEEEec
Q 001703 70 DDSGLFGSSGELMGRVRV-PVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTISLNGK 132 (1024)
Q Consensus 70 ~~~~f~~~~d~~lG~~~i-~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~~~~ 132 (1024)
+ .++|++||++.+ |+..+..........+|++|.+. ....|+|+|++.+.+.
T Consensus 82 ---~--~~~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~~~------~~~~Geil~~~~~~~~ 134 (135)
T cd04017 82 ---S--VGKDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIYKG------GQSAGELLAAFELIEV 134 (135)
T ss_pred ---C--CCCCccceEEEeeeeeecccCCCCCCCceEEEeecC------CCchhheeEEeEEEEe
Confidence 3 578999999997 66555543344567899999822 3478999999999763
No 70
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.67 E-value=2.9e-16 Score=148.76 Aligned_cols=99 Identities=25% Similarity=0.356 Sum_probs=83.8
Q ss_pred EEEEEEEEeecCC-----CCCcEEEEEEC-----C--eEEeeecccCCCCCeEeeEEEEEEec---CCCCeEEEEEEecC
Q 001703 5 RLYVYVLQGQDLL-----AKDSYVKVQIG-----K--HKSKSRILKNNSNPVWNEEFVFRVHN---IDDEELVVSVFQHN 69 (1024)
Q Consensus 5 ~L~V~V~~Ar~L~-----~~DPyv~v~l~-----~--~~~rT~v~~~t~nP~WnE~f~f~v~~---~~~~~L~v~V~d~d 69 (1024)
+|+|+|++|++|+ .+||||+|++. . ++++|+++++++||+|||+|.|.++. +....|.|.|||+|
T Consensus 1 kL~V~Vi~A~~L~~~d~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~d 80 (120)
T cd08395 1 KVTVKVVAANDLKWQTTGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDYC 80 (120)
T ss_pred CEEEEEEECcCCCcccCCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEec
Confidence 5899999999998 68999999983 1 34789999999999999999999862 34467999999999
Q ss_pred CCCCCCCCCCCeeEEEEEeCccccccCCCCCCCEEEEeecCC
Q 001703 70 DDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPK 111 (1024)
Q Consensus 70 ~~~~f~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~ 111 (1024)
..+++++||++.+||.++...+ ....|++|++..
T Consensus 81 -----~~~~dd~IG~~~l~l~~~~~~~---~~~~w~~L~~~~ 114 (120)
T cd08395 81 -----FARDDRLVGVTVLQLRDIAQAG---SCACWLPLGRRI 114 (120)
T ss_pred -----ccCCCCEEEEEEEEHHHCcCCC---cEEEEEECcCcc
Confidence 3568999999999999999754 367899998443
No 71
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.67 E-value=5.1e-16 Score=149.76 Aligned_cols=118 Identities=19% Similarity=0.322 Sum_probs=100.0
Q ss_pred eEEEEEEEEeeCCCCCC-CCCCCCcEEEEEECC--EEEeeecccCCCCCeEeEEEEEEeecCCCCeEEEEEEecCCCCCC
Q 001703 536 WVLTVALVEGVNLASSE-MTGLSDPYVVFTCNG--KTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQ 612 (1024)
Q Consensus 536 ~~L~V~vi~a~~L~~~d-~~g~~DPyv~v~~~~--~~~kT~~~~~t~nP~WnE~f~f~~~~~~~~~L~v~V~D~d~~~~~ 612 (1024)
|.|.|+|++|+||+..+ ..|.+||||++.+++ ...+|+++.+++||.|||.|.|.+. .....|.|+|||++. +++
T Consensus 2 g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~~~~~v~-~~~~~l~~~v~d~~~-~~~ 79 (124)
T cd04044 2 GVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVN-SLTEPLNLTVYDFND-KRK 79 (124)
T ss_pred eEEEEEEEcccCCCcccccCCCCCCeEEEEECCCCcceEeeeecCCCCCcceEEEEEEeC-CCCCEEEEEEEecCC-CCC
Confidence 68999999999999765 357799999999987 7899999999999999999999955 557799999999998 789
Q ss_pred CccceEEEEEcccccCCCccc-eEEEccccccccccceeEEEEEEe
Q 001703 613 ATSLGHAEINFLKHTSTELAD-MWVSLEGKLAQSAQSKVHLRIFLE 657 (1024)
Q Consensus 613 dd~lG~~~i~l~~l~~~~~~~-~w~~L~~~~~~~~~g~l~l~~~~~ 657 (1024)
|++||++.++|.++..+.... .|++|.. +....|+|++.+.+-
T Consensus 80 d~~iG~~~~~l~~l~~~~~~~~~~~~~~~--~~k~~G~i~~~l~~~ 123 (124)
T cd04044 80 DKLIGTAEFDLSSLLQNPEQENLTKNLLR--NGKPVGELNYDLRFF 123 (124)
T ss_pred CceeEEEEEEHHHhccCccccCcchhhhc--CCccceEEEEEEEeC
Confidence 999999999999988776664 4566653 223479999998763
No 72
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=99.67 E-value=3.6e-16 Score=151.49 Aligned_cols=105 Identities=24% Similarity=0.351 Sum_probs=93.2
Q ss_pred CCeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEC-----CEEEeeecccCCCCCeEeEEEEEEeecC--CCCeEEEEEEec
Q 001703 534 DGWVLTVALVEGVNLASSEMTGLSDPYVVFTCN-----GKTRTSSVQLQTCDPQWHDILEFDAMEE--PPSVLDVEVFDF 606 (1024)
Q Consensus 534 ~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~-----~~~~kT~~~~~t~nP~WnE~f~f~~~~~--~~~~L~v~V~D~ 606 (1024)
..+.|+|+|++|+||+..+..+.+||||+|.+. ..+++|+++++++||+|||+|.|.+... ....|.|.|||+
T Consensus 14 ~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~l~~~~l~i~v~~~ 93 (127)
T cd04030 14 QRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEELKRRTLDVAVKNS 93 (127)
T ss_pred CCCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHHhcCCEEEEEEEEC
Confidence 346899999999999999999999999999995 4678999999999999999999996432 246899999999
Q ss_pred CCCC--CCCccceEEEEEcccccCCCccceEEEcc
Q 001703 607 DGPF--DQATSLGHAEINFLKHTSTELADMWVSLE 639 (1024)
Q Consensus 607 d~~~--~~dd~lG~~~i~l~~l~~~~~~~~w~~L~ 639 (1024)
+. + +++++||++.++|.++..+.....||+|.
T Consensus 94 ~~-~~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~ 127 (127)
T cd04030 94 KS-FLSREKKLLGQVLIDLSDLDLSKGFTQWYDLT 127 (127)
T ss_pred Cc-ccCCCCceEEEEEEecccccccCCccceEECc
Confidence 97 5 68999999999999998888889999984
No 73
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=99.67 E-value=6.8e-17 Score=173.37 Aligned_cols=123 Identities=25% Similarity=0.374 Sum_probs=103.6
Q ss_pred HHhhccccCCCCCc-------cccCCCeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEC-----CEEEeeecccCCCCCeE
Q 001703 516 FVRARLRKGSDHGV-------KAQGDGWVLTVALVEGVNLASSEMTGLSDPYVVFTCN-----GKTRTSSVQLQTCDPQW 583 (1024)
Q Consensus 516 ~~~~~~~~~~d~~~-------~~~~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~-----~~~~kT~~~~~t~nP~W 583 (1024)
..+.++++|.|+.. .++.....|+|+|.+|+||.++|.+|.|||||++++- ..+.+|++++.+|||+|
T Consensus 153 v~nVPslCG~DhtE~RGrl~l~~~~~~~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~w 232 (683)
T KOG0696|consen 153 VENVPSLCGTDHTERRGRLYLEAHIKRDVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVW 232 (683)
T ss_pred hhcCCcccCCcchhhcceEEEEEEecCceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCccc
Confidence 35567788877632 2334566899999999999999999999999999993 45779999999999999
Q ss_pred eEEEEEEeec-CCCCeEEEEEEecCCCCCCCccceEEEEEcccccCCCccceEEEccc
Q 001703 584 HDILEFDAME-EPPSVLDVEVFDFDGPFDQATSLGHAEINFLKHTSTELADMWVSLEG 640 (1024)
Q Consensus 584 nE~f~f~~~~-~~~~~L~v~V~D~d~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~ 640 (1024)
||+|.|.+.+ +....|.|+|||||+ -+++||+|...+.+++|... ..+.||.|..
T Consensus 233 NEtftf~Lkp~DkdrRlsiEvWDWDr-TsRNDFMGslSFgisEl~K~-p~~GWyKlLs 288 (683)
T KOG0696|consen 233 NETFTFKLKPSDKDRRLSIEVWDWDR-TSRNDFMGSLSFGISELQKA-PVDGWYKLLS 288 (683)
T ss_pred cceeEEecccccccceeEEEEecccc-cccccccceecccHHHHhhc-chhhHHHHhh
Confidence 9999999743 446699999999999 49999999999999998765 4688999975
No 74
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.67 E-value=5.6e-16 Score=147.35 Aligned_cols=113 Identities=31% Similarity=0.471 Sum_probs=98.9
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEECC-EEEeeecccCCCCCeEeEEEEEEeecCCCCeEEEEEEecCCCCCCCccc
Q 001703 538 LTVALVEGVNLASSEMTGLSDPYVVFTCNG-KTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQATSL 616 (1024)
Q Consensus 538 L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~-~~~kT~~~~~t~nP~WnE~f~f~~~~~~~~~L~v~V~D~d~~~~~dd~l 616 (1024)
|+|+|++|++|+..+..|.+||||++.+++ +.++|+++.+++||.|||+|.|.+.......|.|+|||++. ++++++|
T Consensus 1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~~~~~~T~v~~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~-~~~~~~i 79 (115)
T cd04040 1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWDR-GGKDDLL 79 (115)
T ss_pred CEEEEEeeeCCCCCCCCCCCCCeEEEEECCCcceeeceecCCCCCcccccEEEEeccCCCCEEEEEEEeCCC-CCCCCce
Confidence 579999999999999889999999999975 45799999999999999999999765567799999999998 7899999
Q ss_pred eEEEEEcccccCCCccceEEEccccccccccceeEE
Q 001703 617 GHAEINFLKHTSTELADMWVSLEGKLAQSAQSKVHL 652 (1024)
Q Consensus 617 G~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~g~l~l 652 (1024)
|++.+++.++..+...+.|++|.++++. ..|.|.|
T Consensus 80 G~~~~~l~~l~~~~~~~~~~~L~~~g~~-~~~~~~~ 114 (115)
T cd04040 80 GSAYIDLSDLEPEETTELTLPLDGQGGG-KLGAVFL 114 (115)
T ss_pred EEEEEEHHHcCCCCcEEEEEECcCCCCc-cCceEEc
Confidence 9999999999888889999999875443 3566553
No 75
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.67 E-value=7.5e-16 Score=150.51 Aligned_cols=116 Identities=31% Similarity=0.537 Sum_probs=96.9
Q ss_pred EEEEEEEEeecCC------CCCcEEEEEECCe-------EEeeecccCCCCCeEeeEEEEEEecCCCCeEEEEEEecCCC
Q 001703 5 RLYVYVLQGQDLL------AKDSYVKVQIGKH-------KSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDD 71 (1024)
Q Consensus 5 ~L~V~V~~Ar~L~------~~DPyv~v~l~~~-------~~rT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~ 71 (1024)
.|+|+|++|++|+ .+||||++++++. +.+|++++++.||.|||+|.|.+. .....|.|+|||++
T Consensus 1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~-~~~~~l~~~v~d~~-- 77 (133)
T cd04033 1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVN-PREHRLLFEVFDEN-- 77 (133)
T ss_pred CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEc-CCCCEEEEEEEECC--
Confidence 4899999999998 6899999999654 479999999999999999999984 44678999999999
Q ss_pred CCCCCCCCCeeEEEEEeCccccccCC---CCCCCEEEEeecCCCCCCCCccccEEEEEEEE
Q 001703 72 SGLFGSSGELMGRVRVPVSSIAAEDN---HMLPPTWFSLETPKTRKFTNKDCGKILLTISL 129 (1024)
Q Consensus 72 ~~f~~~~d~~lG~~~i~L~~l~~~~~---~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~ 129 (1024)
. .+++++||++.+++.++..... ......||+|++ +..+ .+..|+|+|++.|
T Consensus 78 -~--~~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~-~~~~--~~~~G~l~~~~~~ 132 (133)
T cd04033 78 -R--LTRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRP-RSSK--SRVKGHLRLYMAY 132 (133)
T ss_pred -C--CCCCCeeEEEEEEHHHCCCcCccccccccchheeeee-cCCC--CcceeEEEEEEee
Confidence 3 5789999999999999886532 235678999994 3222 4679999999987
No 76
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.67 E-value=3.7e-16 Score=147.49 Aligned_cols=101 Identities=21% Similarity=0.384 Sum_probs=88.9
Q ss_pred CeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCEEEeeecccCCCCCeEeEEEEEEeecCC----CCeEEEEEEecCCCC
Q 001703 535 GWVLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAMEEP----PSVLDVEVFDFDGPF 610 (1024)
Q Consensus 535 ~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~~~~t~nP~WnE~f~f~~~~~~----~~~L~v~V~D~d~~~ 610 (1024)
.+.|+|+|++|+||+ .|.+||||++++++++++|+++++++||.|||+|.|.+.... ...|.|+|||++. +
T Consensus 3 ~~~l~V~v~~a~~L~----~~~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~-~ 77 (111)
T cd04011 3 DFQVRVRVIEARQLV----GGNIDPVVKVEVGGQKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRS-L 77 (111)
T ss_pred cEEEEEEEEEcccCC----CCCCCCEEEEEECCEeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCcc-c
Confidence 368999999999998 578999999999999999999999999999999999964332 3589999999998 7
Q ss_pred CCCccceEEEEEcccccCC---CccceEEEccc
Q 001703 611 DQATSLGHAEINFLKHTST---ELADMWVSLEG 640 (1024)
Q Consensus 611 ~~dd~lG~~~i~l~~l~~~---~~~~~w~~L~~ 640 (1024)
++|++||++.++|+++..+ .....|++|.+
T Consensus 78 ~~~~~iG~~~i~l~~v~~~~~~~~~~~w~~L~~ 110 (111)
T cd04011 78 RSDTLIGSFKLDVGTVYDQPDHAFLRKWLLLTD 110 (111)
T ss_pred ccCCccEEEEECCccccCCCCCcceEEEEEeeC
Confidence 8999999999999998665 34578999964
No 77
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=99.66 E-value=3.6e-16 Score=149.46 Aligned_cols=104 Identities=18% Similarity=0.236 Sum_probs=90.6
Q ss_pred CCeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEC------CEEEeeecccCCCCCeEeEEEEEEeecC--CCCeEEEEEEe
Q 001703 534 DGWVLTVALVEGVNLASSEMTGLSDPYVVFTCN------GKTRTSSVQLQTCDPQWHDILEFDAMEE--PPSVLDVEVFD 605 (1024)
Q Consensus 534 ~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~------~~~~kT~~~~~t~nP~WnE~f~f~~~~~--~~~~L~v~V~D 605 (1024)
..+.|.|+|++|+||++++..|.+||||++.+- ..+++|+++++++||+|||+|.|++... ....|.|+|||
T Consensus 12 ~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~~~~L~~~V~~ 91 (124)
T cd08680 12 GDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLYQKTLQVDVCS 91 (124)
T ss_pred CCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhhcCEEEEEEEe
Confidence 456899999999999999989999999999983 2478999999999999999999996433 45699999999
Q ss_pred cCCCCCCCccceEEEEEcccccCC-CccceEEEc
Q 001703 606 FDGPFDQATSLGHAEINFLKHTST-ELADMWVSL 638 (1024)
Q Consensus 606 ~d~~~~~dd~lG~~~i~l~~l~~~-~~~~~w~~L 638 (1024)
+|. ++++++||++.|+|.++... .....||+|
T Consensus 92 ~~~-~~~~~~lG~~~i~L~~~~~~~~~~~~Wy~l 124 (124)
T cd08680 92 VGP-DQQEECLGGAQISLADFESSEEMSTKWYNL 124 (124)
T ss_pred CCC-CCceeEEEEEEEEhhhccCCCccccccccC
Confidence 998 89999999999999998554 457789986
No 78
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=99.66 E-value=9e-16 Score=147.75 Aligned_cols=115 Identities=24% Similarity=0.453 Sum_probs=96.1
Q ss_pred EEEEEEEEeecCC------CCCcEEEEEECCeEEeeecccCCCCCeEeeEEEEEEecCCCCeEEEEEEecCCCCCCCCCC
Q 001703 5 RLYVYVLQGQDLL------AKDSYVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLFGSS 78 (1024)
Q Consensus 5 ~L~V~V~~Ar~L~------~~DPyv~v~l~~~~~rT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~~~f~~~~ 78 (1024)
+|+|+|++|++|. .+||||+|++++.+.+|+++++++||.|||+|.|.+.......|.|+|||++ . .++
T Consensus 1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~---~--~~~ 75 (123)
T cd04025 1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEGADSPLSVEVWDWD---L--VSK 75 (123)
T ss_pred CEEEEEEEeeCCCCCCCCCCcCceEEEEECCEEEeceeecCCCCCccCcEEEEEcCCCCCCEEEEEEEECC---C--CCC
Confidence 5899999999997 6899999999998999999999999999999999986555788999999999 3 578
Q ss_pred CCeeEEEEEeCccccccCCCCCCCEEEEeecCCCCC-CCCccccEEEEEE
Q 001703 79 GELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRK-FTNKDCGKILLTI 127 (1024)
Q Consensus 79 d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~-~~~~~~G~I~lsl 127 (1024)
+++||++.++|.++...+ ....||.|......+ ......|.|.+.+
T Consensus 76 ~~~iG~~~~~l~~l~~~~---~~~~w~~L~~~~~~~~~~~~~~G~l~~~~ 122 (123)
T cd04025 76 NDFLGKVVFSIQTLQQAK---QEEGWFRLLPDPRAEEESGGNLGSLRLKV 122 (123)
T ss_pred CcEeEEEEEEHHHcccCC---CCCCEEECCCCCCCCccccCceEEEEEEe
Confidence 999999999999987642 357899998432221 2466788888865
No 79
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.66 E-value=5.3e-16 Score=149.20 Aligned_cols=105 Identities=15% Similarity=0.276 Sum_probs=92.0
Q ss_pred CCeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEC---CEEEeeecccCCCCCeEeEEEEEE-eecC--CCCeEEEEEEecC
Q 001703 534 DGWVLTVALVEGVNLASSEMTGLSDPYVVFTCN---GKTRTSSVQLQTCDPQWHDILEFD-AMEE--PPSVLDVEVFDFD 607 (1024)
Q Consensus 534 ~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~---~~~~kT~~~~~t~nP~WnE~f~f~-~~~~--~~~~L~v~V~D~d 607 (1024)
..+.|.|+|++|+||++.+..|.+||||++.+. .++++|+++++ +||+|||+|.|+ +... ....|.++|||+|
T Consensus 14 ~~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l~~~~L~~~V~~~~ 92 (124)
T cd08389 14 SARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEELNNMALRFRLYGVE 92 (124)
T ss_pred CCCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHHhccCEEEEEEEECC
Confidence 345899999999999999999999999998773 46789999887 999999999998 3221 3568999999999
Q ss_pred CCCCCCccceEEEEEcccccCCCccceEEEccc
Q 001703 608 GPFDQATSLGHAEINFLKHTSTELADMWVSLEG 640 (1024)
Q Consensus 608 ~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~ 640 (1024)
. ++++++||++.|+|..+..+.....|++|++
T Consensus 93 ~-~~~~~~lG~~~i~L~~l~~~~~~~~w~~L~p 124 (124)
T cd08389 93 R-MRKERLIGEKVVPLSQLNLEGETTVWLTLEP 124 (124)
T ss_pred C-cccCceEEEEEEeccccCCCCCceEEEeCCC
Confidence 8 8999999999999999998889999999974
No 80
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=99.66 E-value=1.1e-15 Score=147.81 Aligned_cols=117 Identities=22% Similarity=0.438 Sum_probs=98.4
Q ss_pred EEEEEEEeecCC----CCCcEEEEEECC--eEEeeecccCCCCCeEeeEEEEEEecCCCCeEEEEEEecCCCCCCCCCCC
Q 001703 6 LYVYVLQGQDLL----AKDSYVKVQIGK--HKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLFGSSG 79 (1024)
Q Consensus 6 L~V~V~~Ar~L~----~~DPyv~v~l~~--~~~rT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~~~f~~~~d 79 (1024)
|.|+|++|+||+ .+||||+++++. .+.+|+++++++||+|||+|.|.+. .....|.|+|||++ . .+++
T Consensus 1 l~v~v~~A~~L~~~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~-~~~~~l~~~v~d~~---~--~~~~ 74 (126)
T cd08678 1 LLVKNIKANGLSEAAGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELS-PNSKELLFEVYDNG---K--KSDS 74 (126)
T ss_pred CEEEEEEecCCCCCCCCcCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEeC-CCCCEEEEEEEECC---C--CCCC
Confidence 679999999996 899999999973 5689999999999999999999994 55788999999999 3 4689
Q ss_pred CeeEEEEEeCccccccCCCCCCCEEEEeecCCCCCCCCccccEEEEEEEEEecC
Q 001703 80 ELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTISLNGKG 133 (1024)
Q Consensus 80 ~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~~~~~ 133 (1024)
++||++.+++.++...+. ...|++|. ++... .....|+|.+.+.|.+.+
T Consensus 75 ~~lG~~~i~l~~l~~~~~---~~~~~~L~-~~~~~-~~~~~G~l~l~~~~~~~~ 123 (126)
T cd08678 75 KFLGLAIVPFDELRKNPS---GRQIFPLQ-GRPYE-GDSVSGSITVEFLFMEPA 123 (126)
T ss_pred ceEEEEEEeHHHhccCCc---eeEEEEec-CCCCC-CCCcceEEEEEEEEeccc
Confidence 999999999999987533 56899998 33221 245799999999998753
No 81
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=99.66 E-value=3.3e-16 Score=151.32 Aligned_cols=114 Identities=15% Similarity=0.225 Sum_probs=97.8
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-EEEeeeccc-CCCCCeEeEEEEEEeecCC----CCeEEEEEEecCCCC
Q 001703 537 VLTVALVEGVNLASSEMTGLSDPYVVFTCNG-KTRTSSVQL-QTCDPQWHDILEFDAMEEP----PSVLDVEVFDFDGPF 610 (1024)
Q Consensus 537 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~-~~~kT~~~~-~t~nP~WnE~f~f~~~~~~----~~~L~v~V~D~d~~~ 610 (1024)
.|+|+|++|++|+..+..|.+||||+|++++ .+.+|++.. ++.||.|||.|.|.+.... ...|.|+|||++. +
T Consensus 1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~-~ 79 (125)
T cd04051 1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERP-S 79 (125)
T ss_pred CEEEEEEEcccCCCCCcccCCceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCC-C
Confidence 3799999999999999899999999999988 888999975 5899999999999964442 6799999999998 7
Q ss_pred CCCccceEEEEEcccccCCCc-----cceEEEccccccccccceeEE
Q 001703 611 DQATSLGHAEINFLKHTSTEL-----ADMWVSLEGKLAQSAQSKVHL 652 (1024)
Q Consensus 611 ~~dd~lG~~~i~l~~l~~~~~-----~~~w~~L~~~~~~~~~g~l~l 652 (1024)
++|++||++.++|.++..+.. ...||+|..+.++ ..|.|++
T Consensus 80 ~~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~g~-~~G~~~~ 125 (125)
T cd04051 80 LGDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPSGK-PQGVLNF 125 (125)
T ss_pred CCCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCCCC-cCeEEeC
Confidence 899999999999999876654 3789999975543 4677764
No 82
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=99.66 E-value=5.8e-16 Score=149.34 Aligned_cols=105 Identities=23% Similarity=0.377 Sum_probs=95.2
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCEEEeeecccC-CCCCeEeEEEEEEeecC---CCCeEEEEEEecCCCCC
Q 001703 536 WVLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQ-TCDPQWHDILEFDAMEE---PPSVLDVEVFDFDGPFD 611 (1024)
Q Consensus 536 ~~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~~~~-t~nP~WnE~f~f~~~~~---~~~~L~v~V~D~d~~~~ 611 (1024)
|.|.|+|++|+||+..+..+.+||||+++++++.++|++..+ ++||+|||+|.|.+... ....|.|+|||.+. ++
T Consensus 1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~-~~ 79 (124)
T cd04049 1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDN-FS 79 (124)
T ss_pred CeEEEEEEecCCCCCCCCCCCcCceEEEEECCEeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECcc-CC
Confidence 579999999999999998999999999999999999999874 99999999999996544 25689999999998 88
Q ss_pred CCccceEEEEEcccccCCCccceEEEcccc
Q 001703 612 QATSLGHAEINFLKHTSTELADMWVSLEGK 641 (1024)
Q Consensus 612 ~dd~lG~~~i~l~~l~~~~~~~~w~~L~~~ 641 (1024)
+|++||++.++|.++..++..+.|++|.+.
T Consensus 80 ~d~~iG~~~i~l~~l~~~~~~~~~~~l~p~ 109 (124)
T cd04049 80 DDDFIGEATIHLKGLFEEGVEPGTAELVPA 109 (124)
T ss_pred CCCeEEEEEEEhHHhhhCCCCcCceEeecc
Confidence 999999999999999888888999999873
No 83
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.66 E-value=1e-15 Score=144.17 Aligned_cols=96 Identities=25% Similarity=0.473 Sum_probs=84.7
Q ss_pred cEEEEEEEEeecCC---CCCcEEEEEECCeEEeeecccCCCCCeEeeEEEEEEecCCCCeEEEEEEecCCCCCCCCCCCC
Q 001703 4 TRLYVYVLQGQDLL---AKDSYVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLFGSSGE 80 (1024)
Q Consensus 4 ~~L~V~V~~Ar~L~---~~DPyv~v~l~~~~~rT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~~~f~~~~d~ 80 (1024)
+.|.|+|++||+|. ..||||+|++++++.+|++.++ .||.|||+|.|.+. .....|.|+|||+| ...|+
T Consensus 2 ~~L~V~Vv~Ar~L~~~~~~dPYV~Ik~g~~k~kT~v~~~-~nP~WnE~F~F~~~-~~~~~L~v~V~dkd------~~~DD 73 (127)
T cd08394 2 SLLCVLVKKAKLDGAPDKFNTYVTLKVQNVKSTTIAVRG-SQPCWEQDFMFEIN-RLDLGLVIELWNKG------LIWDT 73 (127)
T ss_pred ceEEEEEEEeeCCCCCCCCCCeEEEEECCEEeEeeECCC-CCCceeeEEEEEEc-CCCCEEEEEEEeCC------CcCCC
Confidence 58999999999999 6799999999999999999988 59999999999995 45555999999999 34999
Q ss_pred eeEEEEEeCccccccCCCCCCCEEEEee
Q 001703 81 LMGRVRVPVSSIAAEDNHMLPPTWFSLE 108 (1024)
Q Consensus 81 ~lG~~~i~L~~l~~~~~~~~~~~W~~L~ 108 (1024)
+||++.|||.++...+ .....+||+|+
T Consensus 74 ~lG~v~i~L~~v~~~~-~~~~~~Wy~L~ 100 (127)
T cd08394 74 LVGTVWIPLSTIRQSN-EEGPGEWLTLD 100 (127)
T ss_pred ceEEEEEEhHHcccCC-CCCCCccEecC
Confidence 9999999999998763 35568999998
No 84
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=99.65 E-value=1.7e-15 Score=149.29 Aligned_cols=120 Identities=20% Similarity=0.263 Sum_probs=97.5
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEE-----CCEEEeeecccCCCCCeEeEEEEEEeecC--------CCCeEEEEE
Q 001703 537 VLTVALVEGVNLASSEMTGLSDPYVVFTC-----NGKTRTSSVQLQTCDPQWHDILEFDAMEE--------PPSVLDVEV 603 (1024)
Q Consensus 537 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~-----~~~~~kT~~~~~t~nP~WnE~f~f~~~~~--------~~~~L~v~V 603 (1024)
.|+|....+.+|++.+..|.+||||++.+ +.++.||+++++|+||+|||+|.|.+... ....|.|+|
T Consensus 5 el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~V 84 (155)
T cd08690 5 ELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFEV 84 (155)
T ss_pred EEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEEE
Confidence 44455444445888888899999999997 24688999999999999999999996332 135799999
Q ss_pred EecCCCC-CCCccceEEEEEcccccCCCccceEEEccccccccccceeEEEEEEec
Q 001703 604 FDFDGPF-DQATSLGHAEINFLKHTSTELADMWVSLEGKLAQSAQSKVHLRIFLEN 658 (1024)
Q Consensus 604 ~D~d~~~-~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~g~l~l~~~~~~ 658 (1024)
||++. | .+|++||++.++|+.+........|++|.. +.+..+|+|++++-+..
T Consensus 85 ~d~~~-f~~~D~~iG~~~i~L~~l~~~~~~~~~~~L~~-~~k~~Gg~l~v~ir~r~ 138 (155)
T cd08690 85 YHKGG-FLRSDKLLGTAQVKLEPLETKCEIHESVDLMD-GRKATGGKLEVKVRLRE 138 (155)
T ss_pred EeCCC-cccCCCeeEEEEEEcccccccCcceEEEEhhh-CCCCcCCEEEEEEEecC
Confidence 99997 6 579999999999999987767778999974 44467899999998753
No 85
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=99.65 E-value=7.5e-16 Score=148.37 Aligned_cols=106 Identities=23% Similarity=0.352 Sum_probs=93.6
Q ss_pred CCeEEEEEEEEeeCCCCCC-CCCCCCcEEEEEEC---CEEEeeecccCCCCCeEeEEEEEEeecC--CCCeEEEEEEecC
Q 001703 534 DGWVLTVALVEGVNLASSE-MTGLSDPYVVFTCN---GKTRTSSVQLQTCDPQWHDILEFDAMEE--PPSVLDVEVFDFD 607 (1024)
Q Consensus 534 ~~~~L~V~vi~a~~L~~~d-~~g~~DPyv~v~~~---~~~~kT~~~~~t~nP~WnE~f~f~~~~~--~~~~L~v~V~D~d 607 (1024)
..+.|.|+|++|+||+.++ ..|.+||||++++. .+..+|+++++++||+|||.|.|++... ....|.|+|||++
T Consensus 12 ~~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~~l~~~~l~i~v~d~~ 91 (123)
T cd08390 12 EEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKELQRRTLRLSVYDVD 91 (123)
T ss_pred CCCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHHHhcccEEEEEEEECC
Confidence 4568999999999999998 68899999999983 4567899999999999999999996432 2458999999999
Q ss_pred CCCCCCccceEEEEEcccccCCCccceEEEccc
Q 001703 608 GPFDQATSLGHAEINFLKHTSTELADMWVSLEG 640 (1024)
Q Consensus 608 ~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~ 640 (1024)
. ++++++||++.++|.++......+.|++|++
T Consensus 92 ~-~~~~~~iG~~~i~L~~l~~~~~~~~w~~L~~ 123 (123)
T cd08390 92 R-FSRHCIIGHVLFPLKDLDLVKGGVVWRDLEP 123 (123)
T ss_pred c-CCCCcEEEEEEEeccceecCCCceEEEeCCC
Confidence 8 7889999999999999999888999999974
No 86
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=99.65 E-value=5e-16 Score=149.58 Aligned_cols=104 Identities=26% Similarity=0.371 Sum_probs=91.6
Q ss_pred CCeEEEEEEEEeeCCCCCC-CCCCCCcEEEEEEC-----CEEEeeecccCCCCCeEeEEEEEEeecC--CCCeEEEEEEe
Q 001703 534 DGWVLTVALVEGVNLASSE-MTGLSDPYVVFTCN-----GKTRTSSVQLQTCDPQWHDILEFDAMEE--PPSVLDVEVFD 605 (1024)
Q Consensus 534 ~~~~L~V~vi~a~~L~~~d-~~g~~DPyv~v~~~-----~~~~kT~~~~~t~nP~WnE~f~f~~~~~--~~~~L~v~V~D 605 (1024)
..+.|.|+|++|+||+..+ ..|.+||||++.+. ..+.+|+++++++||+|||+|.|.+... ....|.|+|||
T Consensus 12 ~~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l~~~~l~i~v~d 91 (123)
T cd08521 12 KTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQLETRTLQLSVWH 91 (123)
T ss_pred CCCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHHHhCCCEEEEEEEe
Confidence 4568999999999999998 78899999999883 1467999999999999999999995432 24589999999
Q ss_pred cCCCCCCCccceEEEEEcccccCCCccceEEEc
Q 001703 606 FDGPFDQATSLGHAEINFLKHTSTELADMWVSL 638 (1024)
Q Consensus 606 ~d~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L 638 (1024)
+|. ++++++||++.++|.++..+...+.||+|
T Consensus 92 ~~~-~~~~~~iG~~~i~l~~l~~~~~~~~w~~l 123 (123)
T cd08521 92 HDR-FGRNTFLGEVEIPLDSWDLDSQQSEWYPL 123 (123)
T ss_pred CCC-CcCCceeeEEEEecccccccCCCccEEEC
Confidence 998 79999999999999999888888999997
No 87
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=99.65 E-value=1.7e-15 Score=144.88 Aligned_cols=112 Identities=23% Similarity=0.482 Sum_probs=96.0
Q ss_pred cEEEEEEEEeecCC------CCCcEEEEEECCeEEeeecccCCCCCeEeeEEEEEEecCCCCeEEEEEEecCCCCCCCCC
Q 001703 4 TRLYVYVLQGQDLL------AKDSYVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLFGS 77 (1024)
Q Consensus 4 ~~L~V~V~~Ar~L~------~~DPyv~v~l~~~~~rT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~~~f~~~ 77 (1024)
|.|+|+|++|++|+ .+||||++++++...+|++++++.||.|||+|.|.+. .....|.|+|||++ . .+
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~~~~~-~~~~~l~~~v~d~~---~--~~ 74 (119)
T cd08377 1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPIK-DIHDVLEVTVYDED---K--DK 74 (119)
T ss_pred CEEEEEEEeeeCCCCCCCCCCCCcEEEEEECCEeeecceecCCcCCccCcEEEEEec-CcCCEEEEEEEECC---C--CC
Confidence 57999999999998 6899999999988899999999999999999999984 44689999999999 3 46
Q ss_pred CCCeeEEEEEeCccccccCCCCCCCEEEEeecCCCCCCCCccccEEEEEEEE
Q 001703 78 SGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTISL 129 (1024)
Q Consensus 78 ~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~ 129 (1024)
++++||++.+++.++..+ ...||+|..+ ..+ ....|+|+|++.+
T Consensus 75 ~~~~iG~~~~~l~~~~~~-----~~~~~~l~~~-~~~--~~~~G~i~l~~~~ 118 (119)
T cd08377 75 KPEFLGKVAIPLLSIKNG-----ERKWYALKDK-KLR--TRAKGSILLEMDV 118 (119)
T ss_pred CCceeeEEEEEHHHCCCC-----CceEEECccc-CCC--CceeeEEEEEEEe
Confidence 899999999999988753 3579999833 222 4579999999876
No 88
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=99.65 E-value=9e-16 Score=146.81 Aligned_cols=108 Identities=27% Similarity=0.421 Sum_probs=92.9
Q ss_pred EEEEEEEeecCC------CCCcEEEEEECC---eEEeeecccCCCCCeEeeEEEEEEecCCCCeEEEEEEecCCCCCCCC
Q 001703 6 LYVYVLQGQDLL------AKDSYVKVQIGK---HKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLFG 76 (1024)
Q Consensus 6 L~V~V~~Ar~L~------~~DPyv~v~l~~---~~~rT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~~~f~~ 76 (1024)
|.|+|++|++|+ .+||||++++++ .++||++++++.||+|||+|.|.+.......|.|+|||.| . .
T Consensus 2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d---~--~ 76 (119)
T cd04036 2 LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQVKNVLELTVMDED---Y--V 76 (119)
T ss_pred eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcccCCEEEEEEEECC---C--C
Confidence 789999999998 689999999963 5689999999999999999999986555678999999999 3 4
Q ss_pred CCCCeeEEEEEeCccccccCCCCCCCEEEEeecCCCCCCCCccccEEEEEEEEE
Q 001703 77 SSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTISLN 130 (1024)
Q Consensus 77 ~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~~ 130 (1024)
++++||++.++|.++..+ .....|++|. ....|+|++.+.++
T Consensus 77 -~~~~iG~~~~~l~~l~~g---~~~~~~~~L~--------~~~~g~l~~~~~~~ 118 (119)
T cd04036 77 -MDDHLGTVLFDVSKLKLG---EKVRVTFSLN--------PQGKEELEVEFLLE 118 (119)
T ss_pred -CCcccEEEEEEHHHCCCC---CcEEEEEECC--------CCCCceEEEEEEee
Confidence 899999999999998864 3478899998 33579999888764
No 89
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.65 E-value=7.8e-16 Score=151.59 Aligned_cols=98 Identities=26% Similarity=0.512 Sum_probs=83.6
Q ss_pred EEEEEEEEeecCC----CCCcEEEEEECC-----eEEeeecccCCCCCeEeeEEEEEEe---------------cCCCCe
Q 001703 5 RLYVYVLQGQDLL----AKDSYVKVQIGK-----HKSKSRILKNNSNPVWNEEFVFRVH---------------NIDDEE 60 (1024)
Q Consensus 5 ~L~V~V~~Ar~L~----~~DPyv~v~l~~-----~~~rT~v~~~t~nP~WnE~f~f~v~---------------~~~~~~ 60 (1024)
+|.|+|++|+||+ .+||||+|++.+ .+++|+++++++||+|||+|.|.+. +.....
T Consensus 1 kL~V~Vi~ArnL~~~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~~~ 80 (148)
T cd04010 1 KLSVRVIECSDLALKNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEKLE 80 (148)
T ss_pred CEEEEEEeCcCCCCCCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccEEE
Confidence 5899999999998 699999999975 5689999999999999999999984 123467
Q ss_pred EEEEEEecCCCCCCCCCCCCeeEEEEEeCccccccCCCCCCCEEEEeec
Q 001703 61 LVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLET 109 (1024)
Q Consensus 61 L~v~V~d~d~~~~f~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~ 109 (1024)
|.|.|||++ . .++++|||++.|+|.++... ......||+|..
T Consensus 81 L~i~V~d~~---~--~~~ddfLG~v~i~l~~l~~~--~~~~~~W~~L~~ 122 (148)
T cd04010 81 LRVDLWHAS---M--GGGDVFLGEVRIPLRGLDLQ--AGSHQAWYFLQP 122 (148)
T ss_pred EEEEEEcCC---C--CCCCceeEEEEEeccccccc--CCcCcceeecCC
Confidence 999999999 3 56899999999999998874 123678999983
No 90
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=99.65 E-value=6.9e-16 Score=155.08 Aligned_cols=106 Identities=22% Similarity=0.338 Sum_probs=93.8
Q ss_pred CCeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEC-----CEEEeeecccCCCCCeEeEEEEEEeecC---CCCeEEEEEEe
Q 001703 534 DGWVLTVALVEGVNLASSEMTGLSDPYVVFTCN-----GKTRTSSVQLQTCDPQWHDILEFDAMEE---PPSVLDVEVFD 605 (1024)
Q Consensus 534 ~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~-----~~~~kT~~~~~t~nP~WnE~f~f~~~~~---~~~~L~v~V~D 605 (1024)
..|.|.|+|++|+||++.+..|.+||||++.+. ..+++|+++++++||+|||.|.|.+... ....|.|+|||
T Consensus 25 ~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~d 104 (162)
T cd04020 25 STGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTVWD 104 (162)
T ss_pred CCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEEEEe
Confidence 467999999999999999999999999999882 4678999999999999999999984322 23579999999
Q ss_pred cCCCCCCCccceEEEEEcccccCCCccceEEEccc
Q 001703 606 FDGPFDQATSLGHAEINFLKHTSTELADMWVSLEG 640 (1024)
Q Consensus 606 ~d~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~ 640 (1024)
+|. +++|++||++.+++..+......+.|+.|.+
T Consensus 105 ~d~-~~~d~~lG~v~i~l~~~~~~~~~~~w~~~~~ 138 (162)
T cd04020 105 HDK-LSSNDFLGGVRLGLGTGKSYGQAVDWMDSTG 138 (162)
T ss_pred CCC-CCCCceEEEEEEeCCccccCCCccccccCCh
Confidence 998 8999999999999999888778899999975
No 91
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=99.65 E-value=8.6e-16 Score=147.22 Aligned_cols=97 Identities=27% Similarity=0.545 Sum_probs=84.7
Q ss_pred CcEEEEEEEEeecCC-----CCCcEEEEEECC-----eEEeeecccCCCCCeEeeEEEEEE-e--cCCCCeEEEEEEecC
Q 001703 3 STRLYVYVLQGQDLL-----AKDSYVKVQIGK-----HKSKSRILKNNSNPVWNEEFVFRV-H--NIDDEELVVSVFQHN 69 (1024)
Q Consensus 3 ~~~L~V~V~~Ar~L~-----~~DPyv~v~l~~-----~~~rT~v~~~t~nP~WnE~f~f~v-~--~~~~~~L~v~V~d~d 69 (1024)
.+.|.|+|++|+||+ .+||||+|++.+ .++||+++++++||+|||+|.|.+ + +.....|.|+|||+|
T Consensus 12 ~~~L~V~Vi~A~~L~~~~~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d~d 91 (122)
T cd08381 12 NGTLFVMVMHAKNLPLLDGSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSHD 91 (122)
T ss_pred CCEEEEEEEEeeCCCCCCCCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEEEeCC
Confidence 478999999999998 689999999962 468999999999999999999997 3 456789999999999
Q ss_pred CCCCCCCCCCCeeEEEEEeCccccccCCCCCCCEEEEe
Q 001703 70 DDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSL 107 (1024)
Q Consensus 70 ~~~~f~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L 107 (1024)
+ .+++++||++.++|.++... .....||+|
T Consensus 92 ---~--~~~~~~lG~~~i~l~~l~~~---~~~~~W~~L 121 (122)
T cd08381 92 ---S--LVENEFLGGVCIPLKKLDLS---QETEKWYPL 121 (122)
T ss_pred ---C--CcCCcEEEEEEEeccccccC---CCccceEEC
Confidence 4 56899999999999999864 236789987
No 92
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.65 E-value=1.2e-15 Score=145.83 Aligned_cols=102 Identities=25% Similarity=0.348 Sum_probs=91.1
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-EEEeeecccCCCCCeEeEEEEEEeecCCCCeEEEEEEecCCCCCCCc
Q 001703 536 WVLTVALVEGVNLASSEMTGLSDPYVVFTCNG-KTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQAT 614 (1024)
Q Consensus 536 ~~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~-~~~kT~~~~~t~nP~WnE~f~f~~~~~~~~~L~v~V~D~d~~~~~dd 614 (1024)
|.|+|+|++|+||+..+..|.+||||++.+++ ...+|++++++.||.|||.|.|.+ ..+...|.|+|||++. +++|+
T Consensus 1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v-~~~~~~L~v~v~d~~~-~~~d~ 78 (120)
T cd04045 1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPV-TSPNQKITLEVMDYEK-VGKDR 78 (120)
T ss_pred CeEEEEEEeeECCCCccCCCCcCCEEEEEECCEEeeceeEECCCcCCccCceEEEEe-cCCCCEEEEEEEECCC-CCCCC
Confidence 58999999999999999999999999999986 568999999999999999999984 4456799999999998 89999
Q ss_pred cceEEEEEcccccCCCccceEEEccc
Q 001703 615 SLGHAEINFLKHTSTELADMWVSLEG 640 (1024)
Q Consensus 615 ~lG~~~i~l~~l~~~~~~~~w~~L~~ 640 (1024)
+||++.++|.++..+ ..+.||.|-.
T Consensus 79 ~IG~~~~~l~~l~~~-~~~~~~~~~~ 103 (120)
T cd04045 79 SLGSVEINVSDLIKK-NEDGKYVEYD 103 (120)
T ss_pred eeeEEEEeHHHhhCC-CCCceEEecC
Confidence 999999999998876 5577887765
No 93
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=99.65 E-value=9.2e-16 Score=147.94 Aligned_cols=101 Identities=26% Similarity=0.403 Sum_probs=87.2
Q ss_pred CcEEEEEEEEeecCC-------CCCcEEEEEECC-----eEEeeecccCCCCCeEeeEEEEEEe--cCCCCeEEEEEEec
Q 001703 3 STRLYVYVLQGQDLL-------AKDSYVKVQIGK-----HKSKSRILKNNSNPVWNEEFVFRVH--NIDDEELVVSVFQH 68 (1024)
Q Consensus 3 ~~~L~V~V~~Ar~L~-------~~DPyv~v~l~~-----~~~rT~v~~~t~nP~WnE~f~f~v~--~~~~~~L~v~V~d~ 68 (1024)
.+.|.|+|++|+||+ .+||||++++.. .++||+++++++||+|||+|.|.++ ......|.|.|||.
T Consensus 14 ~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~~l~~~~L~v~V~~~ 93 (128)
T cd08392 14 TSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEADLLSSRQLQVSVWHS 93 (128)
T ss_pred CCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCHHHhCCcEEEEEEEeC
Confidence 578999999999997 479999999952 3679999999999999999999986 34568999999999
Q ss_pred CCCCCCCCCCCCeeEEEEEeCccccccCCCCCCCEEEEee
Q 001703 69 NDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLE 108 (1024)
Q Consensus 69 d~~~~f~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~ 108 (1024)
+ + .+++++||++.|+|.++...+.......||+|.
T Consensus 94 ~---~--~~~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l~ 128 (128)
T cd08392 94 R---T--LKRRVFLGEVLIPLADWDFEDTDSQRFLWYPLN 128 (128)
T ss_pred C---C--CcCcceEEEEEEEcCCcccCCCCccccceEECc
Confidence 9 4 578999999999999998765455678999983
No 94
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=99.65 E-value=9.2e-16 Score=150.71 Aligned_cols=93 Identities=33% Similarity=0.537 Sum_probs=85.6
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCEEEeeecccCCCCCeEeEEEEEEeecCCCCeEEEEEEecCCCCCCCcc
Q 001703 536 WVLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQATS 615 (1024)
Q Consensus 536 ~~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~~~~t~nP~WnE~f~f~~~~~~~~~L~v~V~D~d~~~~~dd~ 615 (1024)
|.|+|+|++|+||+..+. +.+||||++++++++.+|+++++++||+|||+|.|.+ .++...|.|+|||+|. +++|++
T Consensus 2 G~L~V~Vi~a~nL~~~d~-~~sDPYV~v~~g~~~~kT~vvk~t~nP~WnE~f~f~i-~~~~~~l~~~V~D~d~-~~~dd~ 78 (145)
T cd04038 2 GLLKVRVVRGTNLAVRDF-TSSDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSV-PNPMAPLKLEVFDKDT-FSKDDS 78 (145)
T ss_pred eEEEEEEEeeECCCCCCC-CCcCcEEEEEECCEEEEeeeEcCCCCCeecccEEEEe-cCCCCEEEEEEEECCC-CCCCCE
Confidence 689999999999999997 8999999999999999999999999999999999995 4557899999999999 899999
Q ss_pred ceEEEEEcccccCCCc
Q 001703 616 LGHAEINFLKHTSTEL 631 (1024)
Q Consensus 616 lG~~~i~l~~l~~~~~ 631 (1024)
||++.+++.++.....
T Consensus 79 iG~a~i~l~~l~~~~~ 94 (145)
T cd04038 79 MGEAEIDLEPLVEAAK 94 (145)
T ss_pred EEEEEEEHHHhhhhhh
Confidence 9999999999766543
No 95
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=99.64 E-value=1.7e-15 Score=145.42 Aligned_cols=109 Identities=28% Similarity=0.592 Sum_probs=95.4
Q ss_pred cEEEEEEEEeecCC------------CCCcEEEEEECCeEEeeecccCCCCCeEeeEEEEEEecCCCCeEEEEEEecCCC
Q 001703 4 TRLYVYVLQGQDLL------------AKDSYVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDD 71 (1024)
Q Consensus 4 ~~L~V~V~~Ar~L~------------~~DPyv~v~l~~~~~rT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~ 71 (1024)
+.|+|+|++|+||+ .+||||++++++..++|++++++.||+|||+|.|.+.......|.|+|||++
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v~d~~-- 78 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEAVVDEVPGQELEIELFDED-- 78 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECCEeEEccccCCCCCCcccceEEEEeCCCCCCEEEEEEEecC--
Confidence 57999999999998 2699999999999999999999999999999999987666789999999999
Q ss_pred CCCCCCCCCeeEEEEEeCccccccCCCCCCCEEEEeecCCCCCCCCccccEEEEEEEE
Q 001703 72 SGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTISL 129 (1024)
Q Consensus 72 ~~f~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~ 129 (1024)
. . ++++||++.++|.++... .....||+|. ....|+|++.++|
T Consensus 79 -~--~-~~~~iG~~~i~l~~l~~~---~~~~~w~~L~--------~~~~G~~~~~~~~ 121 (121)
T cd08391 79 -P--D-KDDFLGRLSIDLGSVEKK---GFIDEWLPLE--------DVKSGRLHLKLEW 121 (121)
T ss_pred -C--C-CCCcEEEEEEEHHHhccc---CccceEEECc--------CCCCceEEEEEeC
Confidence 3 3 889999999999998764 2368999998 3357999998865
No 96
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=99.64 E-value=9e-16 Score=150.07 Aligned_cols=103 Identities=23% Similarity=0.342 Sum_probs=93.1
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEEC----CEEEeeecccCCCCCeEeEEEEEEeecC---------------CCCe
Q 001703 538 LTVALVEGVNLASSEMTGLSDPYVVFTCN----GKTRTSSVQLQTCDPQWHDILEFDAMEE---------------PPSV 598 (1024)
Q Consensus 538 L~V~vi~a~~L~~~d~~g~~DPyv~v~~~----~~~~kT~~~~~t~nP~WnE~f~f~~~~~---------------~~~~ 598 (1024)
|+|+|++|+||+.+ ..|.+||||+|+++ ++.++|+++.++.||.|||.|.|.+... ....
T Consensus 1 L~V~Vi~A~~L~~~-~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~ 79 (137)
T cd08675 1 LSVRVLECRDLALK-SNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSE 79 (137)
T ss_pred CEEEEEEccCCCcc-cCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccE
Confidence 57999999999998 78999999999998 7889999999999999999999997544 3568
Q ss_pred EEEEEEecCCCCCCCccceEEEEEcccccCCCccceEEEccccc
Q 001703 599 LDVEVFDFDGPFDQATSLGHAEINFLKHTSTELADMWVSLEGKL 642 (1024)
Q Consensus 599 L~v~V~D~d~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~~~ 642 (1024)
|.|+|||++. ++++++||++.++|.++........||+|+++.
T Consensus 80 l~i~V~d~~~-~~~~~~IG~~~i~l~~l~~~~~~~~W~~L~~~~ 122 (137)
T cd08675 80 LRVELWHASM-VSGDDFLGEVRIPLQGLQQAGSHQAWYFLQPRE 122 (137)
T ss_pred EEEEEEcCCc-CcCCcEEEEEEEehhhccCCCcccceEecCCcC
Confidence 9999999998 789999999999999988777889999998854
No 97
>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=99.64 E-value=7.8e-16 Score=148.61 Aligned_cols=89 Identities=34% Similarity=0.603 Sum_probs=82.2
Q ss_pred CCCcEEEEEEEEeecCC------CCCcEEEEEECCeEEeeecccCCCCCeEeeEEEEEEecCCCCeEEEEEEecCCCCCC
Q 001703 1 MVSTRLYVYVLQGQDLL------AKDSYVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGL 74 (1024)
Q Consensus 1 ~~~~~L~V~V~~Ar~L~------~~DPyv~v~l~~~~~rT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~~~f 74 (1024)
|.-+.|+|+|++|.||. ++||||.+.+++++.||+++.+++||+|||+|+|.+ ......|.++|||+| .
T Consensus 3 ~~vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg~q~lkT~~v~~n~NPeWNe~ltf~v-~d~~~~lkv~VyD~D---~- 77 (168)
T KOG1030|consen 3 MLVGLLRVRVKRGKNLAIRDFLGSSDPYVVLELGNQKLKTRVVYKNLNPEWNEELTFTV-KDPNTPLKVTVYDKD---T- 77 (168)
T ss_pred ccceEEEEEEEeecCeeeeccccCCCCeEEEEECCeeeeeeeecCCCCCcccceEEEEe-cCCCceEEEEEEeCC---C-
Confidence 34578999999999998 799999999999999999999999999999999999 588889999999999 5
Q ss_pred CCCCCCeeEEEEEeCcccccc
Q 001703 75 FGSSGELMGRVRVPVSSIAAE 95 (1024)
Q Consensus 75 ~~~~d~~lG~~~i~L~~l~~~ 95 (1024)
.+.|||||++.|+|..+...
T Consensus 78 -fs~dD~mG~A~I~l~p~~~~ 97 (168)
T KOG1030|consen 78 -FSSDDFMGEATIPLKPLLEA 97 (168)
T ss_pred -CCcccccceeeeccHHHHHH
Confidence 47999999999999998864
No 98
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.63 E-value=1.6e-15 Score=148.40 Aligned_cols=98 Identities=23% Similarity=0.415 Sum_probs=84.9
Q ss_pred CcEEEEEEEEeecCC-------CCCcEEEEEECC-----eEEeeecccCCCCCeEeeEEEEEEecCCCCeEEEEEE-ecC
Q 001703 3 STRLYVYVLQGQDLL-------AKDSYVKVQIGK-----HKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVF-QHN 69 (1024)
Q Consensus 3 ~~~L~V~V~~Ar~L~-------~~DPyv~v~l~~-----~~~rT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~-d~d 69 (1024)
.+.|.|+|++|+||+ .+||||++++.. .++||+++++++||+|||+|.|.+. .....|.|+|| |++
T Consensus 28 ~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~-l~~~~L~v~V~~d~~ 106 (146)
T cd04028 28 KGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVS-PTGKTLQVIVWGDYG 106 (146)
T ss_pred CCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEc-CCCCEEEEEEEeCCC
Confidence 578999999999997 479999999943 3689999999999999999999996 78899999999 566
Q ss_pred CCCCCCCCCCCeeEEEEEeCccccccCCCCCCCEEEEeec
Q 001703 70 DDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLET 109 (1024)
Q Consensus 70 ~~~~f~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~ 109 (1024)
+ ..++++||++.|+|.++.... ....||+|..
T Consensus 107 ---~--~~~~~~iG~~~i~L~~l~~~~---~~~~Wy~L~~ 138 (146)
T cd04028 107 ---R--MDKKVFMGVAQILLDDLDLSN---LVIGWYKLFP 138 (146)
T ss_pred ---C--CCCCceEEEEEEEcccccCCC---CceeEEecCC
Confidence 3 468999999999999997643 3678999983
No 99
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=99.63 E-value=1.2e-15 Score=150.73 Aligned_cols=99 Identities=26% Similarity=0.504 Sum_probs=87.2
Q ss_pred CCeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----------------------------EEEeeecccCCCCCeEe
Q 001703 534 DGWVLTVALVEGVNLASSEMTGLSDPYVVFTCNG-----------------------------KTRTSSVQLQTCDPQWH 584 (1024)
Q Consensus 534 ~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~-----------------------------~~~kT~~~~~t~nP~Wn 584 (1024)
..+.|.|+|++|+||+++|.+|.+||||+|.++. ...+|+++++++||+||
T Consensus 26 ~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~Wn 105 (153)
T cd08676 26 PIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLNPVWN 105 (153)
T ss_pred CeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCCCccc
Confidence 5679999999999999999999999999999952 23689999999999999
Q ss_pred EEEEEEeecCCCCeEEEEEEecCCCCCCCccceEEEEEcccccCCCccceEEEc
Q 001703 585 DILEFDAMEEPPSVLDVEVFDFDGPFDQATSLGHAEINFLKHTSTELADMWVSL 638 (1024)
Q Consensus 585 E~f~f~~~~~~~~~L~v~V~D~d~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L 638 (1024)
|+|.|.+.......|.|+|||+| |++||++.++++++.. ...+.||+|
T Consensus 106 E~F~f~v~~~~~~~L~i~V~D~d-----d~~IG~v~i~l~~l~~-~~~d~W~~L 153 (153)
T cd08676 106 ETFRFEVEDVSNDQLHLDIWDHD-----DDFLGCVNIPLKDLPS-CGLDSWFKL 153 (153)
T ss_pred cEEEEEeccCCCCEEEEEEEecC-----CCeEEEEEEEHHHhCC-CCCCCeEeC
Confidence 99999975445679999999977 6899999999999884 457999997
No 100
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=99.63 E-value=1.4e-15 Score=145.67 Aligned_cols=93 Identities=22% Similarity=0.300 Sum_probs=83.0
Q ss_pred CCCeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCEEEeeecccCCCCCeEeEEEEEEee-cCCCCeEEEEEEecCCCCC
Q 001703 533 GDGWVLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAM-EEPPSVLDVEVFDFDGPFD 611 (1024)
Q Consensus 533 ~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~~~~t~nP~WnE~f~f~~~-~~~~~~L~v~V~D~d~~~~ 611 (1024)
...+.|.|+|++|+||+. +..|.+||||+|++++++++|+++++++||+|||+|.|... ......|.|+|||+|. ++
T Consensus 25 ~~~~~L~V~V~~A~~L~~-d~~g~~DPYVkV~~~~~~~kT~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d~-~s 102 (127)
T cd04032 25 RGLATLTVTVLRATGLWG-DYFTSTDGYVKVFFGGQEKRTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDRDN-GW 102 (127)
T ss_pred CCcEEEEEEEEECCCCCc-CcCCCCCeEEEEEECCccccCceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeCCC-CC
Confidence 455799999999999984 67889999999999999999999999999999999999742 3456799999999999 79
Q ss_pred CCccceEEEEEccccc
Q 001703 612 QATSLGHAEINFLKHT 627 (1024)
Q Consensus 612 ~dd~lG~~~i~l~~l~ 627 (1024)
+|++||++.++|....
T Consensus 103 ~dd~IG~~~i~l~~~~ 118 (127)
T cd04032 103 DDDLLGTCSVVPEAGV 118 (127)
T ss_pred CCCeeEEEEEEecCCc
Confidence 9999999999999654
No 101
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=99.63 E-value=7.3e-15 Score=141.88 Aligned_cols=116 Identities=16% Similarity=0.239 Sum_probs=97.9
Q ss_pred CcEEEEEEEEeecCC------CCCcEEEEEECCeEEeeecccCCCCCeEeeEEEEEEecCCCCeEEEEEEecCCCCCCCC
Q 001703 3 STRLYVYVLQGQDLL------AKDSYVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLFG 76 (1024)
Q Consensus 3 ~~~L~V~V~~Ar~L~------~~DPyv~v~l~~~~~rT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~~~f~~ 76 (1024)
...|+|+|++|++|. .+||||++++++++.+|++++++.||+|||+|.|.+. .....|.|+|||++ .
T Consensus 2 ~~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~-~~~~~l~i~V~d~~---~--- 74 (126)
T cd04046 2 QVVTQVHVHSAEGLSKQDSGGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYRK-KPRSPIKIQVWNSN---L--- 74 (126)
T ss_pred cEEEEEEEEeCcCCCCCCCCCCcCccEEEEECCEEEEeCccCCCCCCcccceEEEEec-CCCCEEEEEEEECC---C---
Confidence 467999999999998 6999999999999999999999999999999999884 55789999999998 3
Q ss_pred CCCCeeEEEEEeCccccccCCCCCCCEEEEeecCCCCCCCCccccEEEEEEEEEe
Q 001703 77 SSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTISLNG 131 (1024)
Q Consensus 77 ~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~~~ 131 (1024)
.+|++||++.+++..+.. ....|++|. .+..+..+...|+|.+.+.+.+
T Consensus 75 ~~d~~lG~~~~~l~~~~~-----~~~~~~~l~-~~~~~~~~~~~G~i~~~~~~~~ 123 (126)
T cd04046 75 LCDEFLGQATLSADPNDS-----QTLRTLPLR-KRGRDAAGEVPGTISVKVTSSD 123 (126)
T ss_pred CCCCceEEEEEecccCCC-----cCceEEEcc-cCCCCCCCCCCCEEEEEEEEcc
Confidence 258999999999987542 255789997 3333345788999999988754
No 102
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=99.62 E-value=2.3e-15 Score=144.86 Aligned_cols=99 Identities=24% Similarity=0.409 Sum_probs=85.4
Q ss_pred CCcEEEEEEEEeecCC-------CCCcEEEEEECC-----eEEeeecccCCCCCeEeeEEEEEEe--cCCCCeEEEEEEe
Q 001703 2 VSTRLYVYVLQGQDLL-------AKDSYVKVQIGK-----HKSKSRILKNNSNPVWNEEFVFRVH--NIDDEELVVSVFQ 67 (1024)
Q Consensus 2 ~~~~L~V~V~~Ar~L~-------~~DPyv~v~l~~-----~~~rT~v~~~t~nP~WnE~f~f~v~--~~~~~~L~v~V~d 67 (1024)
..+.|.|+|++|+||+ .+||||++++.. .++||+++++++||+|||+|.|.++ ......|.|.|||
T Consensus 13 ~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~l~~~~L~~~V~d 92 (125)
T cd04029 13 KTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQLETRTLQLSVWH 92 (125)
T ss_pred CCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHHHhCCCEEEEEEEE
Confidence 3578999999999997 589999999952 3589999999999999999999986 3456789999999
Q ss_pred cCCCCCCCCCCCCeeEEEEEeCccccccCCCCCCCEEEEee
Q 001703 68 HNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLE 108 (1024)
Q Consensus 68 ~d~~~~f~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~ 108 (1024)
++ . .+++++||++.++|.++... .....||+|+
T Consensus 93 ~~---~--~~~~~~lG~~~i~l~~~~~~---~~~~~w~~l~ 125 (125)
T cd04029 93 YD---R--FGRNTFLGEVEIPLDSWNFD---SQHEECLPLH 125 (125)
T ss_pred CC---C--CCCCcEEEEEEEeCCccccc---CCcccEEECc
Confidence 99 3 57899999999999999875 3478899984
No 103
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=99.62 E-value=4.2e-15 Score=143.77 Aligned_cols=115 Identities=33% Similarity=0.645 Sum_probs=93.5
Q ss_pred cEEEEEEEEeecCC------CCCcEEEEEECCeEEeeecccCCCCCeEeeEEEEEEecCCCCeEEEEEEecCCCC-----
Q 001703 4 TRLYVYVLQGQDLL------AKDSYVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDS----- 72 (1024)
Q Consensus 4 ~~L~V~V~~Ar~L~------~~DPyv~v~l~~~~~rT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~~----- 72 (1024)
++|+|+|++|++|+ .+||||++++++..++|+++++++||.|||+|.|.+. .....|.|+|||+|...
T Consensus 1 ~~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~v~~t~~P~Wne~f~f~~~-~~~~~l~i~v~d~d~~~~~~~~ 79 (127)
T cd04027 1 AKISITVVCAQGLIAKDKTGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECH-NSSDRIKVRVWDEDDDIKSRLK 79 (127)
T ss_pred CeEEEEEEECcCCcCCCCCCCcCcEEEEEECCEeeecceecCCCCCccceEEEEEec-CCCCEEEEEEEECCCCcccccc
Confidence 47999999999998 6899999999988899999999999999999999984 44578999999998210
Q ss_pred -CCCCCCCCeeEEEEEeCccccccCCCCCCCEEEEeecCCCCCCCCccccEEEEEE
Q 001703 73 -GLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTI 127 (1024)
Q Consensus 73 -~f~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl 127 (1024)
+|..+.+++||++.+++.++... ...||.|+ ++..+ ...+|+|+|++
T Consensus 80 ~~~~~~~~~~iG~~~i~l~~~~~~-----~~~w~~L~-~~~~~--~~~~G~i~~~~ 127 (127)
T cd04027 80 QKFTRESDDFLGQTIIEVRTLSGE-----MDVWYNLE-KRTDK--SAVSGAIRLHI 127 (127)
T ss_pred eeccccCCCcceEEEEEhHHccCC-----CCeEEECc-cCCCC--CcEeEEEEEEC
Confidence 01124689999999999887532 56899999 44433 56799999874
No 104
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=99.62 E-value=2e-15 Score=145.52 Aligned_cols=98 Identities=32% Similarity=0.491 Sum_probs=84.6
Q ss_pred CcEEEEEEEEeecCC-------CCCcEEEEEECC-----eEEeeecccCCCCCeEeeEEEEEEe--cCCCCeEEEEEEec
Q 001703 3 STRLYVYVLQGQDLL-------AKDSYVKVQIGK-----HKSKSRILKNNSNPVWNEEFVFRVH--NIDDEELVVSVFQH 68 (1024)
Q Consensus 3 ~~~L~V~V~~Ar~L~-------~~DPyv~v~l~~-----~~~rT~v~~~t~nP~WnE~f~f~v~--~~~~~~L~v~V~d~ 68 (1024)
.+.|.|+|++|+||+ .+||||++++.+ .++||+++++++||+|||+|.|.+. +.....|.|+|||+
T Consensus 14 ~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~~l~~~~L~~~V~d~ 93 (125)
T cd08393 14 LRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVEREELPTRVLNLSVWHR 93 (125)
T ss_pred CCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHHHhCCCEEEEEEEeC
Confidence 468999999999998 479999999952 3589999999999999999999986 45667999999999
Q ss_pred CCCCCCCCCCCCeeEEEEEeCccccccCCCCCCCEEEEee
Q 001703 69 NDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLE 108 (1024)
Q Consensus 69 d~~~~f~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~ 108 (1024)
| + .+++++||++.++|.++... .....||+|+
T Consensus 94 ~---~--~~~~~~iG~~~i~L~~~~~~---~~~~~W~~L~ 125 (125)
T cd08393 94 D---S--LGRNSFLGEVEVDLGSWDWS---NTQPTWYPLQ 125 (125)
T ss_pred C---C--CCCCcEeEEEEEecCccccC---CCCcceEECc
Confidence 9 3 57899999999999999765 2467899984
No 105
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=99.62 E-value=6.7e-15 Score=143.51 Aligned_cols=116 Identities=15% Similarity=0.290 Sum_probs=97.7
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECCEEE-eeecccCCCCCeEeEEEEEEeecCCCCeEEEEEEecCCCCC---C
Q 001703 537 VLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTR-TSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFD---Q 612 (1024)
Q Consensus 537 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~~-kT~~~~~t~nP~WnE~f~f~~~~~~~~~L~v~V~D~d~~~~---~ 612 (1024)
.|.|.|++|++|++++ ||||.|.+++..+ ||+++.++.||.|||+|.|. ..++...|.|.||+.+...+ +
T Consensus 12 sL~v~V~EAk~Lp~~~-----~~Y~~i~Ld~~~vaRT~v~~~~~nP~W~E~F~f~-~~~~~~~l~v~v~k~~~~~~~~~~ 85 (146)
T cd04013 12 SLKLWIIEAKGLPPKK-----RYYCELCLDKTLYARTTSKLKTDTLFWGEHFEFS-NLPPVSVITVNLYRESDKKKKKDK 85 (146)
T ss_pred EEEEEEEEccCCCCcC-----CceEEEEECCEEEEEEEEEcCCCCCcceeeEEec-CCCcccEEEEEEEEccCccccccC
Confidence 6899999999999876 8999999999885 99999999999999999998 44556789999986653222 6
Q ss_pred CccceEEEEEcccccCCCccceEEEccccccc---------cccceeEEEEEEec
Q 001703 613 ATSLGHAEINFLKHTSTELADMWVSLEGKLAQ---------SAQSKVHLRIFLEN 658 (1024)
Q Consensus 613 dd~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~---------~~~g~l~l~~~~~~ 658 (1024)
+++||++.|++..+..+...+.||+|.+..+. ...++|++++.+..
T Consensus 86 ~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~ 140 (146)
T cd04013 86 SQLIGTVNIPVTDVSSRQFVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQS 140 (146)
T ss_pred CcEEEEEEEEHHHhcCCCcccEEEEeecCCCCCccccccccCCCCEEEEEEEEEE
Confidence 79999999999999999999999999874433 34578888887643
No 106
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=99.61 E-value=7.8e-15 Score=140.61 Aligned_cols=112 Identities=21% Similarity=0.406 Sum_probs=92.7
Q ss_pred EEEEEEEeecCC------CCCcEEEEEECCeE-EeeecccCCCCCeEeeEEEEEEecCCCCeEEEEEEecCCCCCCCCCC
Q 001703 6 LYVYVLQGQDLL------AKDSYVKVQIGKHK-SKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLFGSS 78 (1024)
Q Consensus 6 L~V~V~~Ar~L~------~~DPyv~v~l~~~~-~rT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~~~f~~~~ 78 (1024)
|.|+|++|++|. .+||||++++++.. .||+++++++||.|||.|.|.+. .....|.|.|||++ . .++
T Consensus 2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~-~~~~~l~v~v~d~~---~--~~~ 75 (121)
T cd04054 2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHLP-PGFHTVSFYVLDED---T--LSR 75 (121)
T ss_pred EEEEEEEeeCCcCCCCCCCCCceEEEEECCEeeeeeeeEcCCCCCcccceEEEeeC-CCCCEEEEEEEECC---C--CCC
Confidence 899999999998 68999999998754 79999999999999999999984 44579999999999 3 578
Q ss_pred CCeeEEEEEeCccccccCCCCCCCEEEEeecCCCCCCCCccccEEEEEEE
Q 001703 79 GELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTIS 128 (1024)
Q Consensus 79 d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~ 128 (1024)
+++||++.+++..+... ......|++|. +.... ....|+|++.++
T Consensus 76 d~~iG~~~~~~~~~~~~--~~~~~~W~~L~-~~~~~--~~~~G~i~l~~~ 120 (121)
T cd04054 76 DDVIGKVSLTREVISAH--PRGIDGWMNLT-EVDPD--EEVQGEIHLELS 120 (121)
T ss_pred CCEEEEEEEcHHHhccC--CCCCCcEEECe-eeCCC--CccccEEEEEEE
Confidence 99999999998887643 12367899998 32211 356899998875
No 107
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.61 E-value=1.1e-14 Score=142.03 Aligned_cols=113 Identities=25% Similarity=0.467 Sum_probs=97.2
Q ss_pred CCCcEEEEEEEEeecCC---C-------------CCcEEEEEECCeE-EeeecccCCCCCeEeeEEEEEEecCCCCeEEE
Q 001703 1 MVSTRLYVYVLQGQDLL---A-------------KDSYVKVQIGKHK-SKSRILKNNSNPVWNEEFVFRVHNIDDEELVV 63 (1024)
Q Consensus 1 ~~~~~L~V~V~~Ar~L~---~-------------~DPyv~v~l~~~~-~rT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v 63 (1024)
|..+.|+|+|++|++|. . +||||++++++.+ .+|++++++.||.|||+|.|.+. ....|.|
T Consensus 1 ~~~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~--~~~~l~~ 78 (132)
T cd04014 1 MFTGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPKTNSPVWNEEFTTEVH--NGRNLEL 78 (132)
T ss_pred CcceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEEeEEeEcCCCCCCCcceeEEEEcC--CCCEEEE
Confidence 67789999999999997 2 6999999998765 79999999999999999999994 5688999
Q ss_pred EEEecCCCCCCCCCCCCeeEEEEEeCccccccCCCCCCCEEEEeecCCCCCCCCccccEEEEEEEEEe
Q 001703 64 SVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTISLNG 131 (1024)
Q Consensus 64 ~V~d~d~~~~f~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~~~ 131 (1024)
.|||.+ . .+.+++||++.++|.++... +......|++|+ ..|+|+|.++|..
T Consensus 79 ~v~d~~---~--~~~~~~iG~~~i~l~~l~~~-~~~~~~~w~~L~----------~~G~l~l~~~~~~ 130 (132)
T cd04014 79 TVFHDA---A--IGPDDFVANCTISFEDLIQR-GSGSFDLWVDLE----------PQGKLHVKIELKG 130 (132)
T ss_pred EEEeCC---C--CCCCceEEEEEEEhHHhccc-CCCcccEEEEcc----------CCcEEEEEEEEec
Confidence 999988 3 56889999999999998863 123468999997 3599999999865
No 108
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=99.61 E-value=9.5e-15 Score=141.97 Aligned_cols=114 Identities=21% Similarity=0.330 Sum_probs=93.4
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEEC-------------CEEEeeecccCCCCCeE-eEEEEEEeecCCCCeEEEE
Q 001703 537 VLTVALVEGVNLASSEMTGLSDPYVVFTCN-------------GKTRTSSVQLQTCDPQW-HDILEFDAMEEPPSVLDVE 602 (1024)
Q Consensus 537 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~-------------~~~~kT~~~~~t~nP~W-nE~f~f~~~~~~~~~L~v~ 602 (1024)
..+|++++|+||+ ++..|++||||++.+. +++++|+++++++||+| ||+|.|.+. ....|.|+
T Consensus 2 ~~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~--~~~~L~v~ 78 (137)
T cd08691 2 SFSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGL--PTDVLEIE 78 (137)
T ss_pred EEEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcC--CCCEEEEE
Confidence 4689999999998 7788999999999994 24689999999999999 999999953 45689999
Q ss_pred EEecCCCCCC---CccceEEEEEcccccCC---CccceEEEccccc-cccccceeEEEE
Q 001703 603 VFDFDGPFDQ---ATSLGHAEINFLKHTST---ELADMWVSLEGKL-AQSAQSKVHLRI 654 (1024)
Q Consensus 603 V~D~d~~~~~---dd~lG~~~i~l~~l~~~---~~~~~w~~L~~~~-~~~~~g~l~l~~ 654 (1024)
|||++. .++ +++||++.++|.++..+ .....|++|+..+ ....+|+|.|++
T Consensus 79 V~D~~~-~~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~k~~~~s~v~G~~~l~~ 136 (137)
T cd08691 79 VKDKFA-KSRPIIRRFLGKLSIPVQRLLERHAIGDQELSYTLGRRTPTDHVSGQLTFRF 136 (137)
T ss_pred EEecCC-CCCccCCceEEEEEEEHHHhcccccCCceEEEEECCcCCCCCcEEEEEEEEe
Confidence 999875 343 79999999999998654 2356799998643 223478888876
No 109
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=99.61 E-value=1.1e-14 Score=145.99 Aligned_cols=116 Identities=22% Similarity=0.434 Sum_probs=96.1
Q ss_pred CcEEEEEEEEeecCCC------------------------------------CCcEEEEEECCeE-EeeecccCCCCCeE
Q 001703 3 STRLYVYVLQGQDLLA------------------------------------KDSYVKVQIGKHK-SKSRILKNNSNPVW 45 (1024)
Q Consensus 3 ~~~L~V~V~~Ar~L~~------------------------------------~DPyv~v~l~~~~-~rT~v~~~t~nP~W 45 (1024)
.|.|.|+|++|++|+. +||||+|++++.+ .||++++++.||+|
T Consensus 6 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v~~~~~nP~W 85 (158)
T cd04015 6 HGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVIENSENPVW 85 (158)
T ss_pred eeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEEeCCCCCCcc
Confidence 6889999999999971 5999999998765 79999999999999
Q ss_pred eeEEEEEEecCCCCeEEEEEEecCCCCCCCCCCCCeeEEEEEeCccccccCCCCCCCEEEEeecCCCCCCCCccccEEEE
Q 001703 46 NEEFVFRVHNIDDEELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILL 125 (1024)
Q Consensus 46 nE~f~f~v~~~~~~~L~v~V~d~d~~~~f~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~l 125 (1024)
||+|.|.+. ...+.|.|.|||.| . . .+++||++.+|+.++..+ .....|++|.+. .++ .....|+|+|
T Consensus 86 nE~F~~~~~-~~~~~l~~~V~d~d---~--~-~~~~IG~~~i~l~~l~~g---~~~~~w~~L~~~-~~~-~~~~~~~l~v 153 (158)
T cd04015 86 NESFHIYCA-HYASHVEFTVKDND---V--V-GAQLIGRAYIPVEDLLSG---EPVEGWLPILDS-NGK-PPKPGAKIRV 153 (158)
T ss_pred ceEEEEEcc-CCCCEEEEEEEeCC---C--c-CCcEEEEEEEEhHHccCC---CCcceEEECcCC-CCC-CCCCCCEEEE
Confidence 999999984 55678999999999 3 3 568999999999998864 347899999843 222 1456799999
Q ss_pred EEEEE
Q 001703 126 TISLN 130 (1024)
Q Consensus 126 sl~~~ 130 (1024)
+++|.
T Consensus 154 ~~~f~ 158 (158)
T cd04015 154 SLQFT 158 (158)
T ss_pred EEEEC
Confidence 99983
No 110
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.60 E-value=4e-15 Score=138.89 Aligned_cols=95 Identities=31% Similarity=0.606 Sum_probs=85.2
Q ss_pred EEEEEEEEeecCC------CCCcEEEEEECCeEEeeecccCCCCCeEeeEEEEEEecCCCCeEEEEEEecCCCCCCCCCC
Q 001703 5 RLYVYVLQGQDLL------AKDSYVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLFGSS 78 (1024)
Q Consensus 5 ~L~V~V~~Ar~L~------~~DPyv~v~l~~~~~rT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~~~f~~~~ 78 (1024)
.|.|+|++|++|+ .+||||+++++++.++|++++++.||.|||+|.|.+..+....|.|+|||.+ .
T Consensus 1 ~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~--------~ 72 (105)
T cd04050 1 LLFVYLDSAKNLPLAKSTKEPSPYVELTVGKTTQKSKVKERTNNPVWEEGFTFLVRNPENQELEIEVKDDK--------T 72 (105)
T ss_pred CEEEEEeeecCCCCcccCCCCCcEEEEEECCEEEeCccccCCCCCcccceEEEEeCCCCCCEEEEEEEECC--------C
Confidence 3899999999998 6999999999999999999999999999999999997666789999999988 2
Q ss_pred CCeeEEEEEeCccccccCCCCCCCEEEEee
Q 001703 79 GELMGRVRVPVSSIAAEDNHMLPPTWFSLE 108 (1024)
Q Consensus 79 d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~ 108 (1024)
+++||++.++|.++...+ ....+.||+|.
T Consensus 73 ~~~iG~~~i~l~~l~~~~-~~~~~~w~~L~ 101 (105)
T cd04050 73 GKSLGSLTLPLSELLKEP-DLTLDQPFPLD 101 (105)
T ss_pred CCccEEEEEEHHHhhccc-cceeeeeEecC
Confidence 789999999999998654 23478999998
No 111
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.60 E-value=3.2e-15 Score=143.80 Aligned_cols=91 Identities=23% Similarity=0.374 Sum_probs=81.5
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECCEE--EeeecccCCCCCeEeEEEEEEeecCCCCeEEEEEEecCCCCCCCc
Q 001703 537 VLTVALVEGVNLASSEMTGLSDPYVVFTCNGKT--RTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQAT 614 (1024)
Q Consensus 537 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~--~kT~~~~~t~nP~WnE~f~f~~~~~~~~~L~v~V~D~d~~~~~dd 614 (1024)
+|+|.|++|+||++.|..|.+||||++++++.. .+|+++++++||+|||+|.|.+..+....|.|+|||+|. +++|+
T Consensus 1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~~kT~~v~~t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~-~~~dd 79 (124)
T cd04037 1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATLPGNSILKISVMDYDL-LGSDD 79 (124)
T ss_pred CEEEEEEECcCCCCCCCCCCCCcEEEEEECCeeccceeeEEECCCCCccceEEEEEecCCCCCEEEEEEEECCC-CCCCc
Confidence 379999999999999999999999999999765 477888999999999999999655556799999999998 78999
Q ss_pred cceEEEEEcccccC
Q 001703 615 SLGHAEINFLKHTS 628 (1024)
Q Consensus 615 ~lG~~~i~l~~l~~ 628 (1024)
+||++.++|.+...
T Consensus 80 ~iG~~~i~l~~~~~ 93 (124)
T cd04037 80 LIGETVIDLEDRFF 93 (124)
T ss_pred eeEEEEEeeccccc
Confidence 99999999997543
No 112
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=99.60 E-value=3.8e-15 Score=140.23 Aligned_cols=98 Identities=31% Similarity=0.586 Sum_probs=86.0
Q ss_pred EEEEEEEeecCC-------CCCcEEEEEECCeEEeeecccCCCCCeE-eeEEEEEEec--CCCCeEEEEEEecCCCCCCC
Q 001703 6 LYVYVLQGQDLL-------AKDSYVKVQIGKHKSKSRILKNNSNPVW-NEEFVFRVHN--IDDEELVVSVFQHNDDSGLF 75 (1024)
Q Consensus 6 L~V~V~~Ar~L~-------~~DPyv~v~l~~~~~rT~v~~~t~nP~W-nE~f~f~v~~--~~~~~L~v~V~d~d~~~~f~ 75 (1024)
|.|+|++|+||+ .+||||++++++.++||+++++++||.| ||+|.|.++. .....|.|+|||++ .
T Consensus 1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d---~-- 75 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGSTTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHD---T-- 75 (110)
T ss_pred CEEEEEEEECCCccccCCCCCCceEEEEECCeeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCC---C--
Confidence 689999999997 4799999999999999999999999999 9999999863 24579999999999 3
Q ss_pred CCCCCeeEEEEEeCccccccCCCCCCCEEEEee
Q 001703 76 GSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLE 108 (1024)
Q Consensus 76 ~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~ 108 (1024)
.+++++||++.++|.++...++......||+|.
T Consensus 76 ~~~~~~iG~~~~~l~~l~~~~~~~~~~~w~~l~ 108 (110)
T cd08688 76 YSANDAIGKVYIDLNPLLLKDSVSQISGWFPIY 108 (110)
T ss_pred CCCCCceEEEEEeHHHhcccCCccccCCeEEcc
Confidence 578999999999999998744345588999997
No 113
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=99.60 E-value=3.3e-15 Score=142.79 Aligned_cols=98 Identities=20% Similarity=0.419 Sum_probs=84.9
Q ss_pred CcEEEEEEEEeecCC------CCCcEEEEEEC------CeEEeeecccCCCCCeEeeEEEEEEe--cCCCCeEEEEEEec
Q 001703 3 STRLYVYVLQGQDLL------AKDSYVKVQIG------KHKSKSRILKNNSNPVWNEEFVFRVH--NIDDEELVVSVFQH 68 (1024)
Q Consensus 3 ~~~L~V~V~~Ar~L~------~~DPyv~v~l~------~~~~rT~v~~~t~nP~WnE~f~f~v~--~~~~~~L~v~V~d~ 68 (1024)
.+.|.|+|++||||+ .+||||++++. ..++||+++++++||+|||+|.|.++ +.....|.|+|||.
T Consensus 13 ~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~~~~L~~~V~~~ 92 (124)
T cd08680 13 DSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLYQKTLQVDVCSV 92 (124)
T ss_pred CCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhhcCEEEEEEEeC
Confidence 578999999999998 58999999994 23689999999999999999999987 56789999999999
Q ss_pred CCCCCCCCCCCCeeEEEEEeCccccccCCCCCCCEEEEe
Q 001703 69 NDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSL 107 (1024)
Q Consensus 69 d~~~~f~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L 107 (1024)
+ + .+++++||++.|+|.++..... ....||+|
T Consensus 93 ~---~--~~~~~~lG~~~i~L~~~~~~~~--~~~~Wy~l 124 (124)
T cd08680 93 G---P--DQQEECLGGAQISLADFESSEE--MSTKWYNL 124 (124)
T ss_pred C---C--CCceeEEEEEEEEhhhccCCCc--cccccccC
Confidence 9 4 5789999999999999976532 36779976
No 114
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=99.60 E-value=8.1e-15 Score=141.26 Aligned_cols=114 Identities=18% Similarity=0.356 Sum_probs=94.1
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECCE-EEeeecccCCCCCeEeEEEEEEeecCCCCeEEEEEEecCCCCCCCcc
Q 001703 537 VLTVALVEGVNLASSEMTGLSDPYVVFTCNGK-TRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQATS 615 (1024)
Q Consensus 537 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~-~~kT~~~~~t~nP~WnE~f~f~~~~~~~~~L~v~V~D~d~~~~~dd~ 615 (1024)
.|.|+|++|+ |...+..+.+||||+|+++++ ..+|+++++++||+|||.|.|.+. ....|.|+|||++. ++.|++
T Consensus 3 ~L~V~i~~a~-l~~~~~~~~~dPyv~v~~~~~~~~kT~v~~~t~~P~Wne~f~~~~~--~~~~l~~~V~d~~~-~~~~~~ 78 (125)
T cd04021 3 QLQITVESAK-LKSNSKSFKPDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLVT--PQSTLEFKVWSHHT-LKADVL 78 (125)
T ss_pred eEEEEEEeeE-CCCCCcCCCCCeEEEEEECCcccEEeeeeCCCCCCccccEEEEEeC--CCCEEEEEEEeCCC-CCCCcE
Confidence 6899999999 555555889999999999987 889999999999999999999953 45799999999998 789999
Q ss_pred ceEEEEEcccccCCCc-----cceEEEccccc--cccccceeEEEE
Q 001703 616 LGHAEINFLKHTSTEL-----ADMWVSLEGKL--AQSAQSKVHLRI 654 (1024)
Q Consensus 616 lG~~~i~l~~l~~~~~-----~~~w~~L~~~~--~~~~~g~l~l~~ 654 (1024)
||++.++|.++..... ...|++|.... .....|+|++.+
T Consensus 79 iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 124 (125)
T cd04021 79 LGEASLDLSDILKNHNGKLENVKLTLNLSSENKGSSVKVGELTVIL 124 (125)
T ss_pred EEEEEEEHHHhHhhcCCCccceEEEEEEEccCCCcceeeeeEEEEe
Confidence 9999999999765322 34589997543 234578888765
No 115
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.60 E-value=5.1e-15 Score=139.72 Aligned_cols=100 Identities=26% Similarity=0.504 Sum_probs=88.5
Q ss_pred EEEEEEEEeecCC--CCCcEEEEEECCeEEeeecccCCCCCeEeeEEEEEEec----CCCCeEEEEEEecCCCCCCCCCC
Q 001703 5 RLYVYVLQGQDLL--AKDSYVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHN----IDDEELVVSVFQHNDDSGLFGSS 78 (1024)
Q Consensus 5 ~L~V~V~~Ar~L~--~~DPyv~v~l~~~~~rT~v~~~t~nP~WnE~f~f~v~~----~~~~~L~v~V~d~d~~~~f~~~~ 78 (1024)
.|+|+|++|++|. .+||||++++++++++|++++++.||.|||+|.|.+.. .....|.|+|||.+ . .++
T Consensus 5 ~l~V~v~~a~~L~~~~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~---~--~~~ 79 (111)
T cd04011 5 QVRVRVIEARQLVGGNIDPVVKVEVGGQKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSR---S--LRS 79 (111)
T ss_pred EEEEEEEEcccCCCCCCCCEEEEEECCEeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCc---c--ccc
Confidence 5899999999998 89999999999999999999999999999999999742 23578999999999 3 568
Q ss_pred CCeeEEEEEeCccccccCCCCCCCEEEEeec
Q 001703 79 GELMGRVRVPVSSIAAEDNHMLPPTWFSLET 109 (1024)
Q Consensus 79 d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~ 109 (1024)
+++||++.++|.++...+.......|++|.+
T Consensus 80 ~~~iG~~~i~l~~v~~~~~~~~~~~w~~L~~ 110 (111)
T cd04011 80 DTLIGSFKLDVGTVYDQPDHAFLRKWLLLTD 110 (111)
T ss_pred CCccEEEEECCccccCCCCCcceEEEEEeeC
Confidence 9999999999999987666667889999973
No 116
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=99.60 E-value=8.7e-15 Score=140.74 Aligned_cols=113 Identities=19% Similarity=0.329 Sum_probs=92.2
Q ss_pred EEEEEEEEeecCC------CCCcEEEEEEC-CeEEeeecccCCCCCeEeeEEEEEEecCCCCeEEEEEEecCCCCCCCCC
Q 001703 5 RLYVYVLQGQDLL------AKDSYVKVQIG-KHKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLFGS 77 (1024)
Q Consensus 5 ~L~V~V~~Ar~L~------~~DPyv~v~l~-~~~~rT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~~~f~~~ 77 (1024)
.|+|+|++|++|. .+||||+++++ ...++|+++++++||.|||+|.|.+.. ...|.|+|||++ . .+
T Consensus 1 ~l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~--~~~l~i~V~d~~---~--~~ 73 (123)
T cd08382 1 KVRLTVLCADGLAKRDLFRLPDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLTVGP--SSIITIQVFDQK---K--FK 73 (123)
T ss_pred CeEEEEEEecCCCccCCCCCCCcEEEEEECCccceEccEEcCCCCCcccceEEEEeCC--CCEEEEEEEECC---C--CC
Confidence 3899999999998 68999999996 567999999999999999999999943 789999999999 3 33
Q ss_pred C--CCeeEEEEEeCccccccCCCCCCCEEEEeecCCCCCCCCccccEEEEEE
Q 001703 78 S--GELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTI 127 (1024)
Q Consensus 78 ~--d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl 127 (1024)
+ +++||++.+++.++..... ....|++|+..+. .......|+|++.+
T Consensus 74 ~~~d~~lG~~~i~l~~l~~~~~--~~~~~~~l~~~~~-~~~~~~~G~v~~~~ 122 (123)
T cd08382 74 KKDQGFLGCVRIRANAVLPLKD--TGYQRLDLRKLKK-SDNLSVRGKIVVSL 122 (123)
T ss_pred CCCCceEeEEEEEHHHccccCC--CccceeEeecCCC-CCCceEeeEEEEEe
Confidence 3 5899999999999876432 3467999974332 22355689998876
No 117
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.60 E-value=1.2e-14 Score=140.64 Aligned_cols=113 Identities=27% Similarity=0.329 Sum_probs=96.3
Q ss_pred EEEeecCC----CCCcEEEEEECCeEEeeecccCCCCCeEeeEEEEEEec--CCCCeEEEEEEecCCCCCCCCCCCCeeE
Q 001703 10 VLQGQDLL----AKDSYVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHN--IDDEELVVSVFQHNDDSGLFGSSGELMG 83 (1024)
Q Consensus 10 V~~Ar~L~----~~DPyv~v~l~~~~~rT~v~~~t~nP~WnE~f~f~v~~--~~~~~L~v~V~d~d~~~~f~~~~d~~lG 83 (1024)
|++|++|+ .+||||+|++++.+++|++++++.||+|||+|.|.+.. .....|.|+|||++ + .+++++||
T Consensus 2 vi~a~~L~~~~g~~Dpyv~v~~~~~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~---~--~~~d~~iG 76 (127)
T cd08373 2 VVSLKNLPGLKGKGDRIAKVTFRGVKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYE---K--VGRNRLIG 76 (127)
T ss_pred eEEeeCCcccCCCCCCEEEEEECCEeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECC---C--CCCCceEE
Confidence 78999999 79999999999999999999999999999999999863 35789999999999 3 57899999
Q ss_pred EEEEeCccccccCCCCCCCEEEEeecCCCCCCCCccccEEEEEEEEEecCC
Q 001703 84 RVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTISLNGKGH 134 (1024)
Q Consensus 84 ~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~~~~~~ 134 (1024)
++.++|.++..+ .....|++|..... ...+|+|+++++|.+..+
T Consensus 77 ~~~~~l~~l~~~---~~~~~~~~L~~~~~----~~~~~~l~l~~~~~~~~~ 120 (127)
T cd08373 77 SATVSLQDLVSE---GLLEVTEPLLDSNG----RPTGATISLEVSYQPPDG 120 (127)
T ss_pred EEEEEhhHcccC---CceEEEEeCcCCCC----CcccEEEEEEEEEeCCCC
Confidence 999999999864 33678999984332 235799999999998643
No 118
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=99.59 E-value=9.9e-15 Score=139.19 Aligned_cols=112 Identities=22% Similarity=0.285 Sum_probs=88.3
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEECCE-EEeeecccCCCCCeEeEEEEEEeecC--CCCeEEEEEEecCCCCCCCc
Q 001703 538 LTVALVEGVNLASSEMTGLSDPYVVFTCNGK-TRTSSVQLQTCDPQWHDILEFDAMEE--PPSVLDVEVFDFDGPFDQAT 614 (1024)
Q Consensus 538 L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~-~~kT~~~~~t~nP~WnE~f~f~~~~~--~~~~L~v~V~D~d~~~~~dd 614 (1024)
|+|+|++|+||+.. |.+||||+++++++ .++|+++++ +||.|||+|.|.+... ....|.|.+||.+. .+++.
T Consensus 2 L~v~vi~a~~l~~~---~~~dpyv~v~~~~~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~-~~~~~ 76 (117)
T cd08383 2 LRLRILEAKNLPSK---GTRDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRS-KDRDI 76 (117)
T ss_pred eEEEEEEecCCCcC---CCCCceEEEEECCEEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEeccc-CCCee
Confidence 78999999999986 79999999999975 479999988 9999999999996443 23478888888886 56666
Q ss_pred cceEEEEEcccccCCCccceEEEccccc-cccccceeEEEEEE
Q 001703 615 SLGHAEINFLKHTSTELADMWVSLEGKL-AQSAQSKVHLRIFL 656 (1024)
Q Consensus 615 ~lG~~~i~l~~l~~~~~~~~w~~L~~~~-~~~~~g~l~l~~~~ 656 (1024)
++|++. |..+..+...+.||+|.+.. .....|+|+|.+.+
T Consensus 77 ~~g~v~--l~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 117 (117)
T cd08383 77 VIGKVA--LSKLDLGQGKDEWFPLTPVDPDSEVQGSVRLRARY 117 (117)
T ss_pred EEEEEE--ecCcCCCCcceeEEECccCCCCCCcCceEEEEEEC
Confidence 666655 45555577789999998743 34458999998853
No 119
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=99.59 E-value=1.8e-15 Score=147.88 Aligned_cols=104 Identities=21% Similarity=0.349 Sum_probs=89.7
Q ss_pred CCeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEC-----CEEEeeecccCCCCCeEeEEEEEEeecC--CCCeEEEEEEec
Q 001703 534 DGWVLTVALVEGVNLASSEMTGLSDPYVVFTCN-----GKTRTSSVQLQTCDPQWHDILEFDAMEE--PPSVLDVEVFDF 606 (1024)
Q Consensus 534 ~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~-----~~~~kT~~~~~t~nP~WnE~f~f~~~~~--~~~~L~v~V~D~ 606 (1024)
..+.|.|+|++|+||++.|..|.+||||+|.+. ..+.+|+++++++||+|||+|.|.+... ....|.|+|||+
T Consensus 11 ~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~~~l~~~V~d~ 90 (133)
T cd08384 11 QRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAKKTLEITVWDK 90 (133)
T ss_pred CCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhCCCEEEEEEEeC
Confidence 457999999999999999999999999999995 2467999999999999999999996433 245899999999
Q ss_pred CCCCCCCccceEEEEEcccccCCCccceEEEccc
Q 001703 607 DGPFDQATSLGHAEINFLKHTSTELADMWVSLEG 640 (1024)
Q Consensus 607 d~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~ 640 (1024)
|. +++|++||++.+++.. .++....|+.+..
T Consensus 91 d~-~~~~~~lG~~~i~l~~--~~~~~~~W~~~l~ 121 (133)
T cd08384 91 DI-GKSNDYIGGLQLGINA--KGERLRHWLDCLK 121 (133)
T ss_pred CC-CCCccEEEEEEEecCC--CCchHHHHHHHHh
Confidence 98 7899999999999986 4455678998865
No 120
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=99.59 E-value=1.6e-14 Score=139.71 Aligned_cols=112 Identities=22% Similarity=0.427 Sum_probs=94.3
Q ss_pred EEEEEEEEeecCC------CCCcEEEEEECCe---EEeeecccCCCCCeEeeEEEEEEecCCCCeEEEEEEecCCCCCCC
Q 001703 5 RLYVYVLQGQDLL------AKDSYVKVQIGKH---KSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLF 75 (1024)
Q Consensus 5 ~L~V~V~~Ar~L~------~~DPyv~v~l~~~---~~rT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~~~f~ 75 (1024)
.|.|+|++|++|+ .+||||++++++. .++|+++++++||.|||+|.|.+.......|.|+|||.+ .
T Consensus 2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d---~-- 76 (126)
T cd04043 2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEPLWISATVWDRS---F-- 76 (126)
T ss_pred EEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCCCCCEEEEEEEECC---C--
Confidence 6899999999998 6899999998643 589999999999999999999986555789999999999 3
Q ss_pred CCCCCeeEEEEEeCccccccCCCCCCCEEEEeecCCCCCCCCccccEEEEEEEEEe
Q 001703 76 GSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTISLNG 131 (1024)
Q Consensus 76 ~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~~~ 131 (1024)
.+++++||++.++|..+....+......|++|. ..|+|++.+.|..
T Consensus 77 ~~~~~~iG~~~i~l~~~~~~~~~~~~~~w~~l~----------~~g~i~l~~~~~~ 122 (126)
T cd04043 77 VGKHDLCGRASLKLDPKRFGDDGLPREIWLDLD----------TQGRLLLRVSMEG 122 (126)
T ss_pred CCCCceEEEEEEecCHHHcCCCCCCceEEEEcC----------CCCeEEEEEEEee
Confidence 568999999999998875433234467899997 2599999998865
No 121
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.59 E-value=7.6e-15 Score=138.39 Aligned_cols=100 Identities=27% Similarity=0.437 Sum_probs=85.8
Q ss_pred CCCCCCcEEEEEECCE-EEeeecccCCCCCeEeEEEEEEeecCCCCeEEEEEEecCCCCCCCccceEEEEEcccccC-CC
Q 001703 553 MTGLSDPYVVFTCNGK-TRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQATSLGHAEINFLKHTS-TE 630 (1024)
Q Consensus 553 ~~g~~DPyv~v~~~~~-~~kT~~~~~t~nP~WnE~f~f~~~~~~~~~L~v~V~D~d~~~~~dd~lG~~~i~l~~l~~-~~ 630 (1024)
.+|.+||||+|+++++ ..+|++++++.||+|||.|.|.+.......|.|+|||+|. + +|++||++.++|.++.. +.
T Consensus 9 ~~G~~dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~-~-~d~~iG~~~v~L~~l~~~~~ 86 (111)
T cd04052 9 KTGLLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRD-R-HDPVLGSVSISLNDLIDATS 86 (111)
T ss_pred cCCCCCceEEEEECCEEEEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECCC-C-CCCeEEEEEecHHHHHhhhh
Confidence 4789999999999875 5799999999999999999999655556789999999998 7 89999999999999744 45
Q ss_pred ccceEEEccccccccccceeEEEEEEec
Q 001703 631 LADMWVSLEGKLAQSAQSKVHLRIFLEN 658 (1024)
Q Consensus 631 ~~~~w~~L~~~~~~~~~g~l~l~~~~~~ 658 (1024)
..+.||+|++ ..+|+|++++.+.+
T Consensus 87 ~~~~w~~L~~----~~~G~i~~~~~~~p 110 (111)
T cd04052 87 VGQQWFPLSG----NGQGRIRISALWKP 110 (111)
T ss_pred ccceeEECCC----CCCCEEEEEEEEec
Confidence 5689999986 34799999987753
No 122
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.58 E-value=1.3e-14 Score=139.94 Aligned_cols=114 Identities=24% Similarity=0.338 Sum_probs=95.3
Q ss_pred cEEEEEEEEeecCC-------CCCcEEEEEECC--eEEeeecccCCCCCeEeeEEEEEEecCCCCeEEEEEEecCCCCCC
Q 001703 4 TRLYVYVLQGQDLL-------AKDSYVKVQIGK--HKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGL 74 (1024)
Q Consensus 4 ~~L~V~V~~Ar~L~-------~~DPyv~v~l~~--~~~rT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~~~f 74 (1024)
|.|+|+|++|++|+ .+||||++++++ ...+|++++++.||.|||+|.|.+. ...+.|.|+|||.+ .
T Consensus 2 g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~~~~~v~-~~~~~l~~~v~d~~---~- 76 (124)
T cd04044 2 GVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVN-SLTEPLNLTVYDFN---D- 76 (124)
T ss_pred eEEEEEEEcccCCCcccccCCCCCCeEEEEECCCCcceEeeeecCCCCCcceEEEEEEeC-CCCCEEEEEEEecC---C-
Confidence 68999999999998 379999999987 6799999999999999999999995 66889999999999 3
Q ss_pred CCCCCCeeEEEEEeCccccccCCCCCCCEEEEeecCCCCCCCCccccEEEEEEEEEe
Q 001703 75 FGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTISLNG 131 (1024)
Q Consensus 75 ~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~~~ 131 (1024)
.+++++||++.++|.++...+. ....|+.|. . . .+..|+|+++++|.|
T Consensus 77 -~~~d~~iG~~~~~l~~l~~~~~--~~~~~~~~~-~-~----~k~~G~i~~~l~~~p 124 (124)
T cd04044 77 -KRKDKLIGTAEFDLSSLLQNPE--QENLTKNLL-R-N----GKPVGELNYDLRFFP 124 (124)
T ss_pred -CCCCceeEEEEEEHHHhccCcc--ccCcchhhh-c-C----CccceEEEEEEEeCC
Confidence 4689999999999999987533 122355554 2 2 356899999999964
No 123
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=99.58 E-value=3.1e-15 Score=146.63 Aligned_cols=105 Identities=21% Similarity=0.317 Sum_probs=89.7
Q ss_pred CCeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEC--C---EEEeeecccCCCCCeEeEEEEEEeecC--CCCeEEEEEEec
Q 001703 534 DGWVLTVALVEGVNLASSEMTGLSDPYVVFTCN--G---KTRTSSVQLQTCDPQWHDILEFDAMEE--PPSVLDVEVFDF 606 (1024)
Q Consensus 534 ~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~--~---~~~kT~~~~~t~nP~WnE~f~f~~~~~--~~~~L~v~V~D~ 606 (1024)
..+.|.|+|++|+||+..|..|.+||||+|.+. + .+.+|+++++++||+|||+|.|.+... ....|.|+|||+
T Consensus 13 ~~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~~~~~l~~~v~d~ 92 (136)
T cd08404 13 TTNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEELEDISVEFLVLDS 92 (136)
T ss_pred CCCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHHHhCCCEEEEEEEEC
Confidence 345899999999999999999999999999984 2 256899999999999999999996332 345799999999
Q ss_pred CCCCCCCccceEEEEEcccccCCCccceEEEcccc
Q 001703 607 DGPFDQATSLGHAEINFLKHTSTELADMWVSLEGK 641 (1024)
Q Consensus 607 d~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~~ 641 (1024)
|. ++++++||++.+++.. .+.....|++|...
T Consensus 93 d~-~~~~~~iG~~~~~~~~--~~~~~~~w~~l~~~ 124 (136)
T cd08404 93 DR-VTKNEVIGRLVLGPKA--SGSGGHHWKEVCNP 124 (136)
T ss_pred CC-CCCCccEEEEEECCcC--CCchHHHHHHHHhC
Confidence 99 8999999999999998 45567889998653
No 124
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=99.58 E-value=1.1e-14 Score=141.93 Aligned_cols=104 Identities=26% Similarity=0.405 Sum_probs=92.4
Q ss_pred CeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEC-----CEEEeeecccCCCCCeEeEEEEEEeecC-CCCeEEEEEEecCC
Q 001703 535 GWVLTVALVEGVNLASSEMTGLSDPYVVFTCN-----GKTRTSSVQLQTCDPQWHDILEFDAMEE-PPSVLDVEVFDFDG 608 (1024)
Q Consensus 535 ~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~-----~~~~kT~~~~~t~nP~WnE~f~f~~~~~-~~~~L~v~V~D~d~ 608 (1024)
.+.|+|+|++|+||+..+..|.+||||+|.+. ...++|++++++.||.|||+|.|.+... ....|.|+|||++.
T Consensus 12 ~~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~~~~l~v~v~d~~~ 91 (131)
T cd04026 12 DNKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPADKDRRLSIEVWDWDR 91 (131)
T ss_pred CCEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchhcCCEEEEEEEECCC
Confidence 36899999999999999988999999999996 3678999999999999999999996433 35689999999998
Q ss_pred CCCCCccceEEEEEcccccCCCccceEEEccc
Q 001703 609 PFDQATSLGHAEINFLKHTSTELADMWVSLEG 640 (1024)
Q Consensus 609 ~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~ 640 (1024)
++++++||++.++|.++... ..+.||+|..
T Consensus 92 -~~~~~~iG~~~~~l~~l~~~-~~~~w~~L~~ 121 (131)
T cd04026 92 -TTRNDFMGSLSFGVSELIKM-PVDGWYKLLN 121 (131)
T ss_pred -CCCcceeEEEEEeHHHhCcC-ccCceEECcC
Confidence 78999999999999998755 6788999976
No 125
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=99.58 E-value=8.1e-15 Score=139.68 Aligned_cols=99 Identities=25% Similarity=0.462 Sum_probs=81.9
Q ss_pred CCcEEEEEEEEeecCC-----CCCcEEEEEECC-----eEEeeecccCCCCCeEeeEEEEEEe-cCCCCeEEEEEEecCC
Q 001703 2 VSTRLYVYVLQGQDLL-----AKDSYVKVQIGK-----HKSKSRILKNNSNPVWNEEFVFRVH-NIDDEELVVSVFQHND 70 (1024)
Q Consensus 2 ~~~~L~V~V~~Ar~L~-----~~DPyv~v~l~~-----~~~rT~v~~~t~nP~WnE~f~f~v~-~~~~~~L~v~V~d~d~ 70 (1024)
.++.|.|+|++||||+ .+||||++++.+ .++||++++++.||+|||+|.|.+. ......|.|+|||.+
T Consensus 10 ~~~~L~V~Vi~ar~L~~~~~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~~- 88 (119)
T cd08685 10 QNRKLTLHVLEAKGLRSTNSGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLVTVWNKL- 88 (119)
T ss_pred cCCEEEEEEEEEECCCCCCCCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhCCEEEEEEECCC-
Confidence 3678999999999998 589999999963 3579999999999999999999986 233457899999998
Q ss_pred CCCCCCCCCCeeEEEEEeCccccccCCCCCCCEEEEe
Q 001703 71 DSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSL 107 (1024)
Q Consensus 71 ~~~f~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L 107 (1024)
.+ ..++++||++.|||.++..+ .....||.|
T Consensus 89 --~~-~~~~~~lG~~~i~l~~~~~~---~~~~~Wy~l 119 (119)
T cd08685 89 --SK-SRDSGLLGCMSFGVKSIVNQ---KEISGWYYL 119 (119)
T ss_pred --CC-cCCCEEEEEEEecHHHhccC---ccccceEeC
Confidence 31 23578999999999999853 346889986
No 126
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=99.57 E-value=4.1e-14 Score=138.02 Aligned_cols=125 Identities=17% Similarity=0.373 Sum_probs=99.1
Q ss_pred CcEEEEEEEEeecCC-CCCcEEEEEECCeE-EeeecccCCCCCeEeeEEEEEEecCCCCeEEEEEEecCCCCCCCCCCCC
Q 001703 3 STRLYVYVLQGQDLL-AKDSYVKVQIGKHK-SKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLFGSSGE 80 (1024)
Q Consensus 3 ~~~L~V~V~~Ar~L~-~~DPyv~v~l~~~~-~rT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~~~f~~~~d~ 80 (1024)
...|.|.|++|++|+ ..+|||.|.+++.. .||+++.++.||.|+|+|.|.. .+....|.|.||+.++..+ ...+++
T Consensus 10 ~~sL~v~V~EAk~Lp~~~~~Y~~i~Ld~~~vaRT~v~~~~~nP~W~E~F~f~~-~~~~~~l~v~v~k~~~~~~-~~~~~~ 87 (146)
T cd04013 10 ENSLKLWIIEAKGLPPKKRYYCELCLDKTLYARTTSKLKTDTLFWGEHFEFSN-LPPVSVITVNLYRESDKKK-KKDKSQ 87 (146)
T ss_pred EEEEEEEEEEccCCCCcCCceEEEEECCEEEEEEEEEcCCCCCcceeeEEecC-CCcccEEEEEEEEccCccc-cccCCc
Confidence 356999999999999 78999999999987 7999999999999999999986 3456789999987662211 112678
Q ss_pred eeEEEEEeCccccccCCCCCCCEEEEeecCCCCC-----CCCccccEEEEEEEEEec
Q 001703 81 LMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRK-----FTNKDCGKILLTISLNGK 132 (1024)
Q Consensus 81 ~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~-----~~~~~~G~I~lsl~~~~~ 132 (1024)
+||++.||+.++..+ ...+.||+|.....+. ......|.|++++.|.+.
T Consensus 88 ~IG~V~Ip~~~l~~~---~~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~~ 141 (146)
T cd04013 88 LIGTVNIPVTDVSSR---QFVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQST 141 (146)
T ss_pred EEEEEEEEHHHhcCC---CcccEEEEeecCCCCCccccccccCCCCEEEEEEEEEEe
Confidence 999999999999853 4589999999444321 012456899999999764
No 127
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=99.57 E-value=5.3e-15 Score=143.90 Aligned_cols=103 Identities=20% Similarity=0.220 Sum_probs=86.3
Q ss_pred CeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEC---C--EEEeeecccCCCCCeEeEEEEEEeecC--CCCeEEEEEEecC
Q 001703 535 GWVLTVALVEGVNLASSEMTGLSDPYVVFTCN---G--KTRTSSVQLQTCDPQWHDILEFDAMEE--PPSVLDVEVFDFD 607 (1024)
Q Consensus 535 ~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~---~--~~~kT~~~~~t~nP~WnE~f~f~~~~~--~~~~L~v~V~D~d 607 (1024)
...|.|+|++|+||++.+..|.+||||++++. . .+.||+++++++||+|||+|.|.+... ....|.|+|||+|
T Consensus 14 ~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~l~~~~l~~~V~~~d 93 (136)
T cd08406 14 AERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAIVLQDLSLRVTVAEST 93 (136)
T ss_pred CCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHHHhCCcEEEEEEEeCC
Confidence 35899999999999999999999999999993 2 256899999999999999999996332 3568999999999
Q ss_pred CCCCCCccceEEEEEcccccCCCccceEEEccc
Q 001703 608 GPFDQATSLGHAEINFLKHTSTELADMWVSLEG 640 (1024)
Q Consensus 608 ~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~ 640 (1024)
. ++++++||++.|.... .+...+.|..+..
T Consensus 94 ~-~~~~~~iG~v~lg~~~--~g~~~~hW~~ml~ 123 (136)
T cd08406 94 E-DGKTPNVGHVIIGPAA--SGMGLSHWNQMLA 123 (136)
T ss_pred C-CCCCCeeEEEEECCCC--CChhHHHHHHHHH
Confidence 8 8999999999997664 4555667776654
No 128
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=99.57 E-value=1.7e-14 Score=134.78 Aligned_cols=87 Identities=17% Similarity=0.289 Sum_probs=77.9
Q ss_pred cEEEEEEEEeecCC----------CCCcEEEEEECCeEEeeecccCCCCCeEeeEEEEEEec-CCCCeEEEEEEecCCCC
Q 001703 4 TRLYVYVLQGQDLL----------AKDSYVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHN-IDDEELVVSVFQHNDDS 72 (1024)
Q Consensus 4 ~~L~V~V~~Ar~L~----------~~DPyv~v~l~~~~~rT~v~~~t~nP~WnE~f~f~v~~-~~~~~L~v~V~d~d~~~ 72 (1024)
|.|.|+|++|++|+ .+||||+|++++.++||+++++++||+|||+|.|.+.. .....|.|.|||+|
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~~~~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d--- 77 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRRVFRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKD--- 77 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECCEeEeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECC---
Confidence 57999999999998 17999999999889999999999999999999999863 33468999999999
Q ss_pred CCCCCCCCeeEEEEEeCcccccc
Q 001703 73 GLFGSSGELMGRVRVPVSSIAAE 95 (1024)
Q Consensus 73 ~f~~~~d~~lG~~~i~L~~l~~~ 95 (1024)
+ .++|++||++.++|.++...
T Consensus 78 ~--~~~dd~IG~~~l~L~~l~~~ 98 (108)
T cd04039 78 K--FSFNDYVATGSLSVQELLNA 98 (108)
T ss_pred C--CCCCcceEEEEEEHHHHHhh
Confidence 4 57999999999999999875
No 129
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=99.56 E-value=1.2e-14 Score=141.21 Aligned_cols=103 Identities=21% Similarity=0.326 Sum_probs=84.4
Q ss_pred CCeEEEEEEEEeeCCCCCCC--CCCCCcEEEEEECC-----EEEeeecccCCCCCeEeEEEEEEeecC--CCCeEEEEEE
Q 001703 534 DGWVLTVALVEGVNLASSEM--TGLSDPYVVFTCNG-----KTRTSSVQLQTCDPQWHDILEFDAMEE--PPSVLDVEVF 604 (1024)
Q Consensus 534 ~~~~L~V~vi~a~~L~~~d~--~g~~DPyv~v~~~~-----~~~kT~~~~~t~nP~WnE~f~f~~~~~--~~~~L~v~V~ 604 (1024)
..+.|.|+|++|+||+++|. .+.+||||+|++.. .++||+++++++||+|||.|.|.+... ....|.|+||
T Consensus 13 ~~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~~~L~~~~L~~~V~ 92 (138)
T cd08407 13 AANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPSELLAASSVELEVL 92 (138)
T ss_pred CCCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECCHHHhCccEEEEEEE
Confidence 34689999999999999983 35599999999852 256899999999999999999996432 2457999999
Q ss_pred ecCCCCCCCccceEEEEEcccccCCCccceEEEcc
Q 001703 605 DFDGPFDQATSLGHAEINFLKHTSTELADMWVSLE 639 (1024)
Q Consensus 605 D~d~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~ 639 (1024)
|+|. ++++++||++.+.+.. .+.....|..+-
T Consensus 93 d~d~-~~~~d~iG~v~lg~~~--~g~~~~hW~~ml 124 (138)
T cd08407 93 NQDS-PGQSLPLGRCSLGLHT--SGTERQHWEEML 124 (138)
T ss_pred eCCC-CcCcceeceEEecCcC--CCcHHHHHHHHH
Confidence 9999 8999999999999975 444455666553
No 130
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=99.56 E-value=1.4e-14 Score=141.37 Aligned_cols=93 Identities=24% Similarity=0.267 Sum_probs=82.7
Q ss_pred CeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEC-------CEEEeeecccCCCCCeEeEEEEEEeecC----CCCeEEEEE
Q 001703 535 GWVLTVALVEGVNLASSEMTGLSDPYVVFTCN-------GKTRTSSVQLQTCDPQWHDILEFDAMEE----PPSVLDVEV 603 (1024)
Q Consensus 535 ~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~-------~~~~kT~~~~~t~nP~WnE~f~f~~~~~----~~~~L~v~V 603 (1024)
.+.|.|+|++|++|+..+..|.+||||+|++. ..+++|+++++|+||+|||+|.|.+... ....|.|+|
T Consensus 15 ~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l~~~V 94 (133)
T cd04009 15 EQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALLLFTV 94 (133)
T ss_pred CCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechhhcccCCCEEEEEE
Confidence 35899999999999999989999999999995 3578999999999999999999996442 345899999
Q ss_pred EecCCCCCCCccceEEEEEcccccC
Q 001703 604 FDFDGPFDQATSLGHAEINFLKHTS 628 (1024)
Q Consensus 604 ~D~d~~~~~dd~lG~~~i~l~~l~~ 628 (1024)
||+|. +++|++||++.++|.++..
T Consensus 95 ~d~d~-~~~d~~iG~~~i~l~~l~~ 118 (133)
T cd04009 95 KDYDL-LGSNDFEGEAFLPLNDIPG 118 (133)
T ss_pred EecCC-CCCCcEeEEEEEeHHHCCc
Confidence 99998 7889999999999999764
No 131
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=99.56 E-value=3.6e-14 Score=137.61 Aligned_cols=115 Identities=22% Similarity=0.314 Sum_probs=97.1
Q ss_pred EEEEEEEEeeCCCCCC--CCCCCCcEEEEEE------CCEEEeeecccCCC-CCeEeEEEEEEeecCCCCeEEEEEEecC
Q 001703 537 VLTVALVEGVNLASSE--MTGLSDPYVVFTC------NGKTRTSSVQLQTC-DPQWHDILEFDAMEEPPSVLDVEVFDFD 607 (1024)
Q Consensus 537 ~L~V~vi~a~~L~~~d--~~g~~DPyv~v~~------~~~~~kT~~~~~t~-nP~WnE~f~f~~~~~~~~~L~v~V~D~d 607 (1024)
.|+|+|++|+||+..+ ..+.+||||++++ ...+++|+++.++. ||+|||+|.|.+.......|.|+|||++
T Consensus 3 ~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~~ 82 (128)
T cd00275 3 TLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDED 82 (128)
T ss_pred EEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEeCC
Confidence 6899999999999988 5889999999999 34668999987765 9999999999976554568999999999
Q ss_pred CCCCCCccceEEEEEcccccCCCccceEEEccccccc-cccceeEEEEEE
Q 001703 608 GPFDQATSLGHAEINFLKHTSTELADMWVSLEGKLAQ-SAQSKVHLRIFL 656 (1024)
Q Consensus 608 ~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~-~~~g~l~l~~~~ 656 (1024)
. + ++++||++.++|.++..+ ..|++|..+.+. ...|.|.+++++
T Consensus 83 ~-~-~~~~iG~~~~~l~~l~~g---~~~~~l~~~~~~~~~~~~l~v~~~~ 127 (128)
T cd00275 83 S-G-DDDFLGQACLPLDSLRQG---YRHVPLLDSKGEPLELSTLFVHIDI 127 (128)
T ss_pred C-C-CCcEeEEEEEEhHHhcCc---eEEEEecCCCCCCCcceeEEEEEEE
Confidence 8 6 899999999999998554 468999875554 567899988875
No 132
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.56 E-value=2e-14 Score=141.80 Aligned_cols=99 Identities=24% Similarity=0.416 Sum_probs=85.8
Q ss_pred EEEEEEEEeecCC-----C---------------CCcEEEEEECCeEEeeecccCCCCCeEeeEEEEEEe-cCCCCeEEE
Q 001703 5 RLYVYVLQGQDLL-----A---------------KDSYVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVH-NIDDEELVV 63 (1024)
Q Consensus 5 ~L~V~V~~Ar~L~-----~---------------~DPyv~v~l~~~~~rT~v~~~t~nP~WnE~f~f~v~-~~~~~~L~v 63 (1024)
.|.|+|++|++|+ . +||||+|.+++.+.+|+++++++||+|||+|.|.+. ......|.|
T Consensus 1 ~~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~~~kT~v~~~t~nPvWNE~f~f~v~~p~~~~~l~~ 80 (151)
T cd04018 1 RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQKVKTSVKKNSYNPEWNEQIVFPEMFPPLCERIKI 80 (151)
T ss_pred CeEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECCEeeecceEcCCCCCCcceEEEEEeeCCCcCCEEEE
Confidence 4899999999999 1 699999999999999999999999999999999975 345679999
Q ss_pred EEEecCCCCCCCCCCCCeeEEEEEeCccccccCCC----CCCCEEEEee
Q 001703 64 SVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNH----MLPPTWFSLE 108 (1024)
Q Consensus 64 ~V~d~d~~~~f~~~~d~~lG~~~i~L~~l~~~~~~----~~~~~W~~L~ 108 (1024)
+|||+| ..++|++||++.++|.++...+.. ...++|+.|.
T Consensus 81 ~v~D~d-----~~~~dd~iG~~~l~l~~l~~~~~~~~lp~~~p~W~~ly 124 (151)
T cd04018 81 QIRDWD-----RVGNDDVIGTHFIDLSKISNSGDEGFLPTFGPSFVNLY 124 (151)
T ss_pred EEEECC-----CCCCCCEEEEEEEeHHHhccCCccccCCccCceEEEee
Confidence 999999 357999999999999998775321 2467999998
No 133
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=99.56 E-value=1.2e-14 Score=139.13 Aligned_cols=99 Identities=22% Similarity=0.279 Sum_probs=87.5
Q ss_pred EEEEeeCCCCCCCCCCCCcEEEEEECCE-------EEeeecccCCCCCeEeEEEEEEeecCCCCeEEEEEEecCC---CC
Q 001703 541 ALVEGVNLASSEMTGLSDPYVVFTCNGK-------TRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDG---PF 610 (1024)
Q Consensus 541 ~vi~a~~L~~~d~~g~~DPyv~v~~~~~-------~~kT~~~~~t~nP~WnE~f~f~~~~~~~~~L~v~V~D~d~---~~ 610 (1024)
-.++|++|+..+..|.+||||+|++.+. .++|+++++++||+|||+|.|.+..+....|.|+|||+|. .+
T Consensus 5 ~~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~~~~ 84 (120)
T cd04048 5 LSISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKSKDL 84 (120)
T ss_pred EEEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEecCCcCCC
Confidence 3589999999999999999999999754 4899999999999999999998655566789999999995 14
Q ss_pred CCCccceEEEEEcccccCCCccceEEEcc
Q 001703 611 DQATSLGHAEINFLKHTSTELADMWVSLE 639 (1024)
Q Consensus 611 ~~dd~lG~~~i~l~~l~~~~~~~~w~~L~ 639 (1024)
++|++||++.+++.++..+.....|++|.
T Consensus 85 ~~~d~iG~~~i~l~~l~~~~~~~~~~~l~ 113 (120)
T cd04048 85 SDHDFLGEAECTLGEIVSSPGQKLTLPLK 113 (120)
T ss_pred CCCcEEEEEEEEHHHHhcCCCcEEEEEcc
Confidence 79999999999999998888888999994
No 134
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=99.55 E-value=2.7e-14 Score=138.12 Aligned_cols=100 Identities=27% Similarity=0.457 Sum_probs=84.1
Q ss_pred CcEEEEEEEEeecCC-------CCCcEEEEEEC---CeEEeeecccCCCCCeEeeEEEEE-Ee--cCCCCeEEEEEEecC
Q 001703 3 STRLYVYVLQGQDLL-------AKDSYVKVQIG---KHKSKSRILKNNSNPVWNEEFVFR-VH--NIDDEELVVSVFQHN 69 (1024)
Q Consensus 3 ~~~L~V~V~~Ar~L~-------~~DPyv~v~l~---~~~~rT~v~~~t~nP~WnE~f~f~-v~--~~~~~~L~v~V~d~d 69 (1024)
.++|.|+|++|+||+ .+||||++++. +++.||+++++++||+|||+|.|. ++ +.....|.|.|||+|
T Consensus 15 ~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~~~~~~L~~~V~d~d 94 (128)
T cd08388 15 KKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYNQLQDLSLHFAVLSFD 94 (128)
T ss_pred CCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHHHhCCCEEEEEEEEcC
Confidence 578999999999998 46999999995 345799999999999999999994 54 334568999999999
Q ss_pred CCCCCCCCCCCeeEEEEEeCccccccCCCCCCCEEEEee
Q 001703 70 DDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLE 108 (1024)
Q Consensus 70 ~~~~f~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~ 108 (1024)
+ .+++++||++.++|.++...++ .....|.+|+
T Consensus 95 ---~--~~~d~~lG~~~i~L~~l~~~~~-~~~~~~~~~~ 127 (128)
T cd08388 95 ---R--YSRDDVIGEVVCPLAGADLLNE-GELLVSREIQ 127 (128)
T ss_pred ---C--CCCCceeEEEEEeccccCCCCC-ceEEEEEecc
Confidence 4 5789999999999999987533 2377899886
No 135
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=99.55 E-value=2.5e-14 Score=137.89 Aligned_cols=98 Identities=27% Similarity=0.465 Sum_probs=85.3
Q ss_pred CcEEEEEEEEeecCC------CCCcEEEEEEC---CeEEeeecccCCCCCeEeeEEEEEEe--cCCCCeEEEEEEecCCC
Q 001703 3 STRLYVYVLQGQDLL------AKDSYVKVQIG---KHKSKSRILKNNSNPVWNEEFVFRVH--NIDDEELVVSVFQHNDD 71 (1024)
Q Consensus 3 ~~~L~V~V~~Ar~L~------~~DPyv~v~l~---~~~~rT~v~~~t~nP~WnE~f~f~v~--~~~~~~L~v~V~d~d~~ 71 (1024)
.+.|.|+|++|+||+ .+||||++++. ...++|++++++.||+|||+|.|.++ ......|.|+|||++
T Consensus 15 ~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~i~V~d~~-- 92 (124)
T cd08387 15 MGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPPQELPKRTLEVLLYDFD-- 92 (124)
T ss_pred CCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEeCCHHHhCCCEEEEEEEECC--
Confidence 578999999999998 68999999994 34589999999999999999999986 334678999999999
Q ss_pred CCCCCCCCCeeEEEEEeCccccccCCCCCCCEEEEee
Q 001703 72 SGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLE 108 (1024)
Q Consensus 72 ~~f~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~ 108 (1024)
. .+++++||++.++|.++...+ ....||+|+
T Consensus 93 -~--~~~~~~iG~~~i~l~~~~~~~---~~~~W~~l~ 123 (124)
T cd08387 93 -Q--FSRDECIGVVELPLAEVDLSE---KLDLWRKIQ 123 (124)
T ss_pred -C--CCCCceeEEEEEecccccCCC---CcceEEECc
Confidence 3 578999999999999998753 468899986
No 136
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=99.55 E-value=3.4e-14 Score=136.97 Aligned_cols=99 Identities=34% Similarity=0.582 Sum_probs=84.9
Q ss_pred CCcEEEEEEEEeecCC------CCCcEEEEEECC---eEEeeecccCCCCCeEeeEEEEEEe--cCCCCeEEEEEEecCC
Q 001703 2 VSTRLYVYVLQGQDLL------AKDSYVKVQIGK---HKSKSRILKNNSNPVWNEEFVFRVH--NIDDEELVVSVFQHND 70 (1024)
Q Consensus 2 ~~~~L~V~V~~Ar~L~------~~DPyv~v~l~~---~~~rT~v~~~t~nP~WnE~f~f~v~--~~~~~~L~v~V~d~d~ 70 (1024)
..+.|.|+|++|+||+ .+||||++++.+ .+++|+++++++||+|||+|.|.++ ......|.|+|||++
T Consensus 14 ~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~V~d~d- 92 (124)
T cd08385 14 QSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSELGNKTLVFSVYDFD- 92 (124)
T ss_pred CCCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHHHhCCCEEEEEEEeCC-
Confidence 3578999999999998 689999999953 4589999999999999999999985 234678999999999
Q ss_pred CCCCCCCCCCeeEEEEEeCccccccCCCCCCCEEEEee
Q 001703 71 DSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLE 108 (1024)
Q Consensus 71 ~~~f~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~ 108 (1024)
+ .+++++||++.++|.++..+ .....|++|+
T Consensus 93 --~--~~~~~~lG~~~i~l~~~~~~---~~~~~W~~l~ 123 (124)
T cd08385 93 --R--FSKHDLIGEVRVPLLTVDLG---HVTEEWRDLE 123 (124)
T ss_pred --C--CCCCceeEEEEEecCcccCC---CCcceEEEcc
Confidence 4 46899999999999998763 3477899986
No 137
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.54 E-value=8.8e-15 Score=143.46 Aligned_cols=105 Identities=20% Similarity=0.340 Sum_probs=88.6
Q ss_pred CCeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEC--C---EEEeeecccCCCCCeEeEEEEEEeecC--CCCeEEEEEEec
Q 001703 534 DGWVLTVALVEGVNLASSEMTGLSDPYVVFTCN--G---KTRTSSVQLQTCDPQWHDILEFDAMEE--PPSVLDVEVFDF 606 (1024)
Q Consensus 534 ~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~--~---~~~kT~~~~~t~nP~WnE~f~f~~~~~--~~~~L~v~V~D~ 606 (1024)
..+.|.|+|++|+||+..+..|.+||||+|++. + .+.+|+++++++||+|||+|.|.+... ....|.|+|||+
T Consensus 13 ~~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~~~~~~~l~~~v~d~ 92 (136)
T cd08405 13 TANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLERLRETTLIITVMDK 92 (136)
T ss_pred CCCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHHHhCCCEEEEEEEEC
Confidence 456899999999999999999999999999983 2 357899999999999999999996422 245899999999
Q ss_pred CCCCCCCccceEEEEEcccccCCCccceEEEcccc
Q 001703 607 DGPFDQATSLGHAEINFLKHTSTELADMWVSLEGK 641 (1024)
Q Consensus 607 d~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~~ 641 (1024)
|. +++|++||++.+++... +.....|+.+-..
T Consensus 93 ~~-~~~~~~lG~~~i~~~~~--~~~~~~w~~~~~~ 124 (136)
T cd08405 93 DR-LSRNDLIGKIYLGWKSG--GLELKHWKDMLSK 124 (136)
T ss_pred CC-CCCCcEeEEEEECCccC--CchHHHHHHHHhC
Confidence 98 89999999999999875 4556677777553
No 138
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.54 E-value=3.4e-14 Score=137.20 Aligned_cols=98 Identities=28% Similarity=0.574 Sum_probs=82.2
Q ss_pred CCcEEEEEEEEeecCC------CCCcEEEEEECC-----eEEeeecccCCCCCeEeeEEEEEEe---cCCCCeEEEEEEe
Q 001703 2 VSTRLYVYVLQGQDLL------AKDSYVKVQIGK-----HKSKSRILKNNSNPVWNEEFVFRVH---NIDDEELVVSVFQ 67 (1024)
Q Consensus 2 ~~~~L~V~V~~Ar~L~------~~DPyv~v~l~~-----~~~rT~v~~~t~nP~WnE~f~f~v~---~~~~~~L~v~V~d 67 (1024)
..++|.|+|++|+||+ .+||||+|++.+ .+++|++++++.||+|||+|.|.+. +.....|.|+|||
T Consensus 14 ~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~l~~~V~d 93 (125)
T cd04031 14 VTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRETLKERTLEVTVWD 93 (125)
T ss_pred CCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHHhCCCEEEEEEEe
Confidence 3588999999999998 689999999964 4689999999999999999999853 2356889999999
Q ss_pred cCCCCCCCCCCCCeeEEEEEeCccccccCCCCCCCEEEEee
Q 001703 68 HNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLE 108 (1024)
Q Consensus 68 ~d~~~~f~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~ 108 (1024)
++ + .+++++||++.++|.+.... ....||+|+
T Consensus 94 ~~---~--~~~~~~iG~~~i~l~~~~~~----~~~~W~~L~ 125 (125)
T cd04031 94 YD---R--DGENDFLGEVVIDLADALLD----DEPHWYPLQ 125 (125)
T ss_pred CC---C--CCCCcEeeEEEEeccccccc----CCcceEECc
Confidence 99 3 56899999999999983322 246899985
No 139
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=99.54 E-value=4.7e-14 Score=136.63 Aligned_cols=100 Identities=26% Similarity=0.461 Sum_probs=84.7
Q ss_pred CcEEEEEEEEeecCC------CCCcEEEEEEC-----CeEEeeecccCCCCCeEeeEEEEEEe--cCCCCeEEEEEEecC
Q 001703 3 STRLYVYVLQGQDLL------AKDSYVKVQIG-----KHKSKSRILKNNSNPVWNEEFVFRVH--NIDDEELVVSVFQHN 69 (1024)
Q Consensus 3 ~~~L~V~V~~Ar~L~------~~DPyv~v~l~-----~~~~rT~v~~~t~nP~WnE~f~f~v~--~~~~~~L~v~V~d~d 69 (1024)
.+.|.|+|++|+||+ .+||||++++. ..+++|++++++.||+|||+|.|.+. ......|.|.|||.+
T Consensus 15 ~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~l~~~~l~i~v~~~~ 94 (127)
T cd04030 15 RQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEELKRRTLDVAVKNSK 94 (127)
T ss_pred CCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHHhcCCEEEEEEEECC
Confidence 478999999999998 68999999995 35689999999999999999999986 345679999999998
Q ss_pred CCCCCCCCCCCeeEEEEEeCccccccCCCCCCCEEEEee
Q 001703 70 DDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLE 108 (1024)
Q Consensus 70 ~~~~f~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~ 108 (1024)
.+..+++++||++.++|.++... .....||+|+
T Consensus 95 ---~~~~~~~~~iG~~~i~l~~l~~~---~~~~~W~~L~ 127 (127)
T cd04030 95 ---SFLSREKKLLGQVLIDLSDLDLS---KGFTQWYDLT 127 (127)
T ss_pred ---cccCCCCceEEEEEEeccccccc---CCccceEECc
Confidence 32126899999999999998764 3468899984
No 140
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=99.54 E-value=8.1e-15 Score=143.72 Aligned_cols=104 Identities=25% Similarity=0.432 Sum_probs=87.9
Q ss_pred CCeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEC--C---EEEeeecccCCCCCeEeEEEEEEeecCC--CCeEEEEEEec
Q 001703 534 DGWVLTVALVEGVNLASSEMTGLSDPYVVFTCN--G---KTRTSSVQLQTCDPQWHDILEFDAMEEP--PSVLDVEVFDF 606 (1024)
Q Consensus 534 ~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~--~---~~~kT~~~~~t~nP~WnE~f~f~~~~~~--~~~L~v~V~D~ 606 (1024)
..+.|.|+|++|+||+.++..|.+||||+|++. + .+++|+++++++||+|||+|.|.+.... ...|.|+|||+
T Consensus 13 ~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~v~d~ 92 (136)
T cd08402 13 TAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQIQKVHLIVTVLDY 92 (136)
T ss_pred CCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHHHhCCCEEEEEEEeC
Confidence 456899999999999999999999999999994 2 3568999999999999999999964322 34799999999
Q ss_pred CCCCCCCccceEEEEEcccccCCCccceEEEccc
Q 001703 607 DGPFDQATSLGHAEINFLKHTSTELADMWVSLEG 640 (1024)
Q Consensus 607 d~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~ 640 (1024)
|. +++|++||++.|++.. .+.....|+++-.
T Consensus 93 ~~-~~~~~~iG~~~i~~~~--~~~~~~~W~~~~~ 123 (136)
T cd08402 93 DR-IGKNDPIGKVVLGCNA--TGAELRHWSDMLA 123 (136)
T ss_pred CC-CCCCceeEEEEECCcc--CChHHHHHHHHHh
Confidence 98 8999999999999976 3455677887754
No 141
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.54 E-value=3.7e-14 Score=136.39 Aligned_cols=97 Identities=28% Similarity=0.498 Sum_probs=83.9
Q ss_pred CcEEEEEEEEeecCC------CCCcEEEEEEC---CeEEeeecccCCCCCeEeeEEEEE-Ee--cCCCCeEEEEEEecCC
Q 001703 3 STRLYVYVLQGQDLL------AKDSYVKVQIG---KHKSKSRILKNNSNPVWNEEFVFR-VH--NIDDEELVVSVFQHND 70 (1024)
Q Consensus 3 ~~~L~V~V~~Ar~L~------~~DPyv~v~l~---~~~~rT~v~~~t~nP~WnE~f~f~-v~--~~~~~~L~v~V~d~d~ 70 (1024)
.++|.|+|++|+||+ .+||||++.+. ..+.||+++++ +||+|||+|.|. +. ......|.|.|||++
T Consensus 15 ~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l~~~~L~~~V~~~~- 92 (124)
T cd08389 15 ARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEELNNMALRFRLYGVE- 92 (124)
T ss_pred CCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHHhccCEEEEEEEECC-
Confidence 578999999999998 68999998884 35689999888 999999999998 65 456789999999999
Q ss_pred CCCCCCCCCCeeEEEEEeCccccccCCCCCCCEEEEee
Q 001703 71 DSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLE 108 (1024)
Q Consensus 71 ~~~f~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~ 108 (1024)
+ .+++++||++.|+|.++... .....|++|+
T Consensus 93 --~--~~~~~~lG~~~i~L~~l~~~---~~~~~w~~L~ 123 (124)
T cd08389 93 --R--MRKERLIGEKVVPLSQLNLE---GETTVWLTLE 123 (124)
T ss_pred --C--cccCceEEEEEEeccccCCC---CCceEEEeCC
Confidence 4 57899999999999999764 3478899997
No 142
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=99.53 E-value=1.1e-13 Score=128.86 Aligned_cols=94 Identities=17% Similarity=0.335 Sum_probs=75.2
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEEC-----CEEEeeecccCCCCCeEeEEEEEEeecCCCCeEEEEEEec------
Q 001703 538 LTVALVEGVNLASSEMTGLSDPYVVFTCN-----GKTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDF------ 606 (1024)
Q Consensus 538 L~V~vi~a~~L~~~d~~g~~DPyv~v~~~-----~~~~kT~~~~~t~nP~WnE~f~f~~~~~~~~~L~v~V~D~------ 606 (1024)
|.|+|++|+||+ |.+||||++.++ ..+.+|+++++|+||+|||+|+|++ . ....|.+.|||+
T Consensus 1 L~V~V~~A~~L~-----~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l-~-~s~~L~~~v~d~~~~~~~ 73 (118)
T cd08686 1 LNVIVHSAQGFK-----QSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIEL-E-GSQTLRILCYEKCYSKVK 73 (118)
T ss_pred CEEEEEeCCCCC-----CCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEe-C-CCCEEEEEEEEccccccc
Confidence 579999999995 468999999885 2468999999999999999999995 3 467999999998
Q ss_pred -CCCCCCCccceEEEEEccc--ccCCCccceEEEcc
Q 001703 607 -DGPFDQATSLGHAEINFLK--HTSTELADMWVSLE 639 (1024)
Q Consensus 607 -d~~~~~dd~lG~~~i~l~~--l~~~~~~~~w~~L~ 639 (1024)
|. .++|++||++.+.|.. +........-+.|.
T Consensus 74 ~d~-~~~d~~~G~g~i~Ld~~~~~~~~~~~~~~~~~ 108 (118)
T cd08686 74 LDG-EGTDAIMGKGQIQLDPQSLQTKKWQEKVISMN 108 (118)
T ss_pred ccc-cCcccEEEEEEEEECHHHhccCCeeEEEEEec
Confidence 56 6889999999888865 33333334445553
No 143
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=99.53 E-value=3.1e-14 Score=134.29 Aligned_cols=94 Identities=23% Similarity=0.467 Sum_probs=80.6
Q ss_pred cEEEEEEEEeecCC-------CCCcEEEEEECC---eEEeeecccCCCCCeEeeEEEEEEecC---CCCeEEEEEEecCC
Q 001703 4 TRLYVYVLQGQDLL-------AKDSYVKVQIGK---HKSKSRILKNNSNPVWNEEFVFRVHNI---DDEELVVSVFQHND 70 (1024)
Q Consensus 4 ~~L~V~V~~Ar~L~-------~~DPyv~v~l~~---~~~rT~v~~~t~nP~WnE~f~f~v~~~---~~~~L~v~V~d~d~ 70 (1024)
|.|+|+|++|++|+ .+||||+|++.+ ...+|+++++++||+|||+|.|.+... ....|.|+|||+|
T Consensus 1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d- 79 (111)
T cd04041 1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSD- 79 (111)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCC-
Confidence 57999999999998 579999999943 458999999999999999999987532 4578999999999
Q ss_pred CCCCCCCCCCeeEEEEEeCccccccCCCCCCCEEEEee
Q 001703 71 DSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLE 108 (1024)
Q Consensus 71 ~~~f~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~ 108 (1024)
+ .++|++||++.++|.++... ..|+++.
T Consensus 80 --~--~~~dd~lG~~~i~l~~l~~~------~~~~~~~ 107 (111)
T cd04041 80 --R--FTADDRLGRVEIDLKELIED------RNWMGRR 107 (111)
T ss_pred --C--CCCCCcceEEEEEHHHHhcC------CCCCccc
Confidence 4 57899999999999999853 4588876
No 144
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=99.53 E-value=1.2e-14 Score=142.07 Aligned_cols=106 Identities=20% Similarity=0.276 Sum_probs=85.9
Q ss_pred CCeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEC--C---EEEeeecccCCCCCeEeEEEEEEeecCC--CCeEEEEEEec
Q 001703 534 DGWVLTVALVEGVNLASSEMTGLSDPYVVFTCN--G---KTRTSSVQLQTCDPQWHDILEFDAMEEP--PSVLDVEVFDF 606 (1024)
Q Consensus 534 ~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~--~---~~~kT~~~~~t~nP~WnE~f~f~~~~~~--~~~L~v~V~D~ 606 (1024)
..+.|.|+|++|+||+..|..|.+||||++.+. + ++++|+++++|+||+|||+|.|.+.... ...|.|+|||+
T Consensus 12 ~~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~~~~l~~~V~d~ 91 (135)
T cd08410 12 SAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEELENVSLVFTVYGH 91 (135)
T ss_pred CCCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHHHhCCCEEEEEEEeC
Confidence 456899999999999999999999999999973 2 3579999999999999999999963322 33699999999
Q ss_pred CCCCCCCccceEEEEEcccccCCCccceEEEcccc
Q 001703 607 DGPFDQATSLGHAEINFLKHTSTELADMWVSLEGK 641 (1024)
Q Consensus 607 d~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~~ 641 (1024)
|. .+++++||++.|....... ...+.|+.|...
T Consensus 92 d~-~~~~~~iG~~~l~~~~~~~-~~~~~W~~l~~~ 124 (135)
T cd08410 92 NV-KSSNDFIGRIVIGQYSSGP-SETNHWRRMLNS 124 (135)
T ss_pred CC-CCCCcEEEEEEEcCccCCc-hHHHHHHHHHhC
Confidence 98 7999999999866533222 235778888653
No 145
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=99.53 E-value=3.8e-14 Score=136.85 Aligned_cols=111 Identities=24% Similarity=0.424 Sum_probs=92.2
Q ss_pred EEEEEEEEeecCC------CCCcEEEEEECC-eEEeeeccc-CCCCCeEeeEEEEEEecC----CCCeEEEEEEecCCCC
Q 001703 5 RLYVYVLQGQDLL------AKDSYVKVQIGK-HKSKSRILK-NNSNPVWNEEFVFRVHNI----DDEELVVSVFQHNDDS 72 (1024)
Q Consensus 5 ~L~V~V~~Ar~L~------~~DPyv~v~l~~-~~~rT~v~~-~t~nP~WnE~f~f~v~~~----~~~~L~v~V~d~d~~~ 72 (1024)
+|+|+|++|++|+ .+||||+|++++ .+++|+++. ++.||.|||+|.|.+... ....|.|+|||.+
T Consensus 1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~--- 77 (125)
T cd04051 1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCER--- 77 (125)
T ss_pred CEEEEEEEcccCCCCCcccCCceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECC---
Confidence 4899999999999 689999999988 789999986 589999999999998643 2689999999999
Q ss_pred CCCCCCCCeeEEEEEeCccccccCCC--CCCCEEEEeecCCCCCCCCccccEEEE
Q 001703 73 GLFGSSGELMGRVRVPVSSIAAEDNH--MLPPTWFSLETPKTRKFTNKDCGKILL 125 (1024)
Q Consensus 73 ~f~~~~d~~lG~~~i~L~~l~~~~~~--~~~~~W~~L~~~~~~~~~~~~~G~I~l 125 (1024)
. .+++++||++.++|.++...... .....||.|.++. .+..|.|++
T Consensus 78 ~--~~~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~-----g~~~G~~~~ 125 (125)
T cd04051 78 P--SLGDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPS-----GKPQGVLNF 125 (125)
T ss_pred C--CCCCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCC-----CCcCeEEeC
Confidence 3 46899999999999999876432 2457899999433 457888764
No 146
>PLN03008 Phospholipase D delta
Probab=99.52 E-value=5.7e-14 Score=166.73 Aligned_cols=103 Identities=21% Similarity=0.342 Sum_probs=88.2
Q ss_pred CCCCcEEEEEECCE-EEeeecccCCCCCeEeEEEEEEeecCCCCeEEEEEEecCCCCCCCccceEEEEEcccccCCCccc
Q 001703 555 GLSDPYVVFTCNGK-TRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQATSLGHAEINFLKHTSTELAD 633 (1024)
Q Consensus 555 g~~DPyv~v~~~~~-~~kT~~~~~t~nP~WnE~f~f~~~~~~~~~L~v~V~D~d~~~~~dd~lG~~~i~l~~l~~~~~~~ 633 (1024)
++|||||+|.++++ ..||+++++++||+|||+|.|.+ .++...|.|+|||+|. ++ +++||++.|||.++..+...+
T Consensus 75 ~tSDPYV~I~Lg~~rv~RTrVi~n~~NPvWNE~F~f~v-ah~~s~L~f~VkD~D~-~g-aD~IG~a~IPL~~L~~Ge~vd 151 (868)
T PLN03008 75 ITSDPYVTVVVPQATLARTRVLKNSQEPLWDEKFNISI-AHPFAYLEFQVKDDDV-FG-AQIIGTAKIPVRDIASGERIS 151 (868)
T ss_pred CCCCceEEEEECCcceeeEEeCCCCCCCCcceeEEEEe-cCCCceEEEEEEcCCc-cC-CceeEEEEEEHHHcCCCCceE
Confidence 47899999999875 56999999999999999999995 4567799999999998 76 589999999999999999999
Q ss_pred eEEEccccccccc--cceeEEEEEEeccC
Q 001703 634 MWVSLEGKLAQSA--QSKVHLRIFLENNN 660 (1024)
Q Consensus 634 ~w~~L~~~~~~~~--~g~l~l~~~~~~~~ 660 (1024)
.|++|.+..++.. .++|+|++.+.+..
T Consensus 152 ~Wl~Ll~~~~kp~k~~~kl~v~lqf~pv~ 180 (868)
T PLN03008 152 GWFPVLGASGKPPKAETAIFIDMKFTPFD 180 (868)
T ss_pred EEEEccccCCCCCCCCcEEEEEEEEEEcc
Confidence 9999987655443 56899998765443
No 147
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=99.51 E-value=1.7e-14 Score=141.04 Aligned_cols=104 Identities=26% Similarity=0.440 Sum_probs=86.9
Q ss_pred CCeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEC--C---EEEeeecccCCCCCeEeEEEEEEeecCC--CCeEEEEEEec
Q 001703 534 DGWVLTVALVEGVNLASSEMTGLSDPYVVFTCN--G---KTRTSSVQLQTCDPQWHDILEFDAMEEP--PSVLDVEVFDF 606 (1024)
Q Consensus 534 ~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~--~---~~~kT~~~~~t~nP~WnE~f~f~~~~~~--~~~L~v~V~D~ 606 (1024)
..+.|+|+|++|++|++++..|.+||||+|.+. + .+.+|+++++++||.|||+|.|.+.... ...|.|+|||+
T Consensus 12 ~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~~~~l~~~v~d~ 91 (134)
T cd08403 12 TAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPENVDNVSLIIAVVDY 91 (134)
T ss_pred CCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHHHhCCCEEEEEEEEC
Confidence 356899999999999999999999999999984 2 3578999999999999999999864322 24699999999
Q ss_pred CCCCCCCccceEEEEEcccccCCCccceEEEccc
Q 001703 607 DGPFDQATSLGHAEINFLKHTSTELADMWVSLEG 640 (1024)
Q Consensus 607 d~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~ 640 (1024)
|. ++++++||++.|++.. .+.....|+.+-.
T Consensus 92 ~~-~~~~~~IG~~~l~~~~--~~~~~~~w~~~~~ 122 (134)
T cd08403 92 DR-VGHNELIGVCRVGPNA--DGQGREHWNEMLA 122 (134)
T ss_pred CC-CCCCceeEEEEECCCC--CCchHHHHHHHHH
Confidence 98 7999999999999873 3445677887754
No 148
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=99.51 E-value=7.3e-14 Score=135.94 Aligned_cols=84 Identities=27% Similarity=0.487 Sum_probs=73.6
Q ss_pred CcEEEEEEEEeecCC------CCCcEEEEEECC-----eEEeeecccCCCCCeEeeEEEEEEe--cCCCCeEEEEEEecC
Q 001703 3 STRLYVYVLQGQDLL------AKDSYVKVQIGK-----HKSKSRILKNNSNPVWNEEFVFRVH--NIDDEELVVSVFQHN 69 (1024)
Q Consensus 3 ~~~L~V~V~~Ar~L~------~~DPyv~v~l~~-----~~~rT~v~~~t~nP~WnE~f~f~v~--~~~~~~L~v~V~d~d 69 (1024)
.++|.|+|++|+||+ .+||||+|++.. .+.||+++++++||+|||+|.|.++ ......|.|+|||+|
T Consensus 14 ~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~l~~~~l~~~V~~~d 93 (136)
T cd08406 14 AERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAIVLQDLSLRVTVAEST 93 (136)
T ss_pred CCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHHHhCCcEEEEEEEeCC
Confidence 568999999999998 689999999942 2578999999999999999999987 467789999999999
Q ss_pred CCCCCCCCCCCeeEEEEEeCcc
Q 001703 70 DDSGLFGSSGELMGRVRVPVSS 91 (1024)
Q Consensus 70 ~~~~f~~~~d~~lG~~~i~L~~ 91 (1024)
+ .+++++||++.|+...
T Consensus 94 ---~--~~~~~~iG~v~lg~~~ 110 (136)
T cd08406 94 ---E--DGKTPNVGHVIIGPAA 110 (136)
T ss_pred ---C--CCCCCeeEEEEECCCC
Confidence 4 5789999999997654
No 149
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=99.51 E-value=5.6e-14 Score=134.49 Aligned_cols=104 Identities=13% Similarity=0.171 Sum_probs=83.2
Q ss_pred CCCeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEC-----CEEEeeecccCCC-CCeEeEEEEEEeecCC-CCeEEEEEEe
Q 001703 533 GDGWVLTVALVEGVNLASSEMTGLSDPYVVFTCN-----GKTRTSSVQLQTC-DPQWHDILEFDAMEEP-PSVLDVEVFD 605 (1024)
Q Consensus 533 ~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~-----~~~~kT~~~~~t~-nP~WnE~f~f~~~~~~-~~~L~v~V~D 605 (1024)
...+.|+|.|++|+||++++..+.+||||+|.+- -.++||+++++|+ ||+|||+|.|++..+. ...|.|+|||
T Consensus 11 p~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~~v~l~v~v~d 90 (135)
T cd08692 11 AVNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQEHGIQFLIKLYS 90 (135)
T ss_pred CcCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCchhheeEEEEEEEe
Confidence 4567999999999999998667788999999883 2467999999996 6999999999975432 3378999999
Q ss_pred cCCCCCCCccceEEEEEcccccCCCccceEEEc
Q 001703 606 FDGPFDQATSLGHAEINFLKHTSTELADMWVSL 638 (1024)
Q Consensus 606 ~d~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L 638 (1024)
+|. .+++++||++.+..... .+...+.|...
T Consensus 91 ~~~-~~~n~~IG~v~lG~~~~-~~~~~~hW~~m 121 (135)
T cd08692 91 RSS-VRRKHFLGQVWISSDSS-SSEAVEQWKDT 121 (135)
T ss_pred CCC-CcCCceEEEEEECCccC-CchhhhhHHHH
Confidence 998 79999999999999763 22234566554
No 150
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=99.51 E-value=2.6e-14 Score=139.80 Aligned_cols=105 Identities=27% Similarity=0.383 Sum_probs=91.6
Q ss_pred CCeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----EEEeeecccCCCCCeEeEEEEEEeecCC--CCeEEEEEEec
Q 001703 534 DGWVLTVALVEGVNLASSEMTGLSDPYVVFTCNG-----KTRTSSVQLQTCDPQWHDILEFDAMEEP--PSVLDVEVFDF 606 (1024)
Q Consensus 534 ~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~-----~~~kT~~~~~t~nP~WnE~f~f~~~~~~--~~~L~v~V~D~ 606 (1024)
..+.|.|+|++|+||+..+..+.+||||++++.. .+.+|+++.++.||.|||+|.|.+.... ...|.|+|||.
T Consensus 12 ~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l~~~~l~~~v~d~ 91 (134)
T cd00276 12 TAERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLEEVSLVITVVDK 91 (134)
T ss_pred CCCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHHhCCcEEEEEEEec
Confidence 3468999999999999999899999999999853 2569999999999999999999964432 56899999999
Q ss_pred CCCCCCCccceEEEEEcccccCCCccceEEEcccc
Q 001703 607 DGPFDQATSLGHAEINFLKHTSTELADMWVSLEGK 641 (1024)
Q Consensus 607 d~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~~ 641 (1024)
+. ++++++||++.+++.+ .+...+.|++|...
T Consensus 92 ~~-~~~~~~lG~~~i~l~~--~~~~~~~W~~l~~~ 123 (134)
T cd00276 92 DS-VGRNEVIGQVVLGPDS--GGEELEHWNEMLAS 123 (134)
T ss_pred CC-CCCCceeEEEEECCCC--CCcHHHHHHHHHhC
Confidence 98 7899999999999999 66678899999764
No 151
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=99.51 E-value=9.7e-14 Score=133.62 Aligned_cols=98 Identities=27% Similarity=0.520 Sum_probs=83.6
Q ss_pred CCcEEEEEEEEeecCC-------CCCcEEEEEECC-----eEEeeecccCCCCCeEeeEEEEEEe--cCCCCeEEEEEEe
Q 001703 2 VSTRLYVYVLQGQDLL-------AKDSYVKVQIGK-----HKSKSRILKNNSNPVWNEEFVFRVH--NIDDEELVVSVFQ 67 (1024)
Q Consensus 2 ~~~~L~V~V~~Ar~L~-------~~DPyv~v~l~~-----~~~rT~v~~~t~nP~WnE~f~f~v~--~~~~~~L~v~V~d 67 (1024)
..+.|.|+|++|+||+ .+||||++++.+ .+++|++++++.||+|||+|.|.+. ......|.|.|||
T Consensus 12 ~~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l~~~~l~i~v~d 91 (123)
T cd08521 12 KTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQLETRTLQLSVWH 91 (123)
T ss_pred CCCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHHHhCCCEEEEEEEe
Confidence 3678999999999997 579999999842 4589999999999999999999986 2346789999999
Q ss_pred cCCCCCCCCCCCCeeEEEEEeCccccccCCCCCCCEEEEe
Q 001703 68 HNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSL 107 (1024)
Q Consensus 68 ~d~~~~f~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L 107 (1024)
.+ + .+++++||++.++|.++...+ ....||+|
T Consensus 92 ~~---~--~~~~~~iG~~~i~l~~l~~~~---~~~~w~~l 123 (123)
T cd08521 92 HD---R--FGRNTFLGEVEIPLDSWDLDS---QQSEWYPL 123 (123)
T ss_pred CC---C--CcCCceeeEEEEecccccccC---CCccEEEC
Confidence 99 3 578999999999999997542 36889987
No 152
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.51 E-value=8.1e-14 Score=134.14 Aligned_cols=103 Identities=22% Similarity=0.365 Sum_probs=87.6
Q ss_pred CCeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEC-----CEEEeeecccCCCCCeEeEEEEEEeecC---CCCeEEEEEEe
Q 001703 534 DGWVLTVALVEGVNLASSEMTGLSDPYVVFTCN-----GKTRTSSVQLQTCDPQWHDILEFDAMEE---PPSVLDVEVFD 605 (1024)
Q Consensus 534 ~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~-----~~~~kT~~~~~t~nP~WnE~f~f~~~~~---~~~~L~v~V~D 605 (1024)
..+.|.|+|++|++|++.+..|.+||||++.+. ....+|+++++++||+|||.|.|..... ....|.|+|||
T Consensus 13 ~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~~v~d 92 (123)
T cd04035 13 ANSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEEDIQRKTLRLLVLD 92 (123)
T ss_pred CCCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHHhCCCEEEEEEEE
Confidence 356899999999999999988999999999983 3468999999999999999999963322 24689999999
Q ss_pred cCCCCCCCccceEEEEEcccccCCCccceEEEc
Q 001703 606 FDGPFDQATSLGHAEINFLKHTSTELADMWVSL 638 (1024)
Q Consensus 606 ~d~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L 638 (1024)
++. + .+++||++.++|+++..++....|+.|
T Consensus 93 ~~~-~-~~~~iG~~~i~l~~l~~~~~~~~~~~~ 123 (123)
T cd04035 93 EDR-F-GNDFLGETRIPLKKLKPNQTKQFNICL 123 (123)
T ss_pred cCC-c-CCeeEEEEEEEcccCCCCcceEeeccC
Confidence 998 7 889999999999999887766666543
No 153
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=99.51 E-value=2.1e-13 Score=132.50 Aligned_cols=115 Identities=24% Similarity=0.405 Sum_probs=92.6
Q ss_pred EEEEEEEeecCC-----CCCcEEEEEECC-------------eEEeeecccCCCCCeE-eeEEEEEEecCCCCeEEEEEE
Q 001703 6 LYVYVLQGQDLL-----AKDSYVKVQIGK-------------HKSKSRILKNNSNPVW-NEEFVFRVHNIDDEELVVSVF 66 (1024)
Q Consensus 6 L~V~V~~Ar~L~-----~~DPyv~v~l~~-------------~~~rT~v~~~t~nP~W-nE~f~f~v~~~~~~~L~v~V~ 66 (1024)
..|++++|+||+ .+||||++++.. ++++|+++++++||+| ||+|.|.+. ....|.|+||
T Consensus 3 ~~~~~~~A~~L~~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~--~~~~L~v~V~ 80 (137)
T cd08691 3 FSLSGLQARNLKKGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGL--PTDVLEIEVK 80 (137)
T ss_pred EEEEEEEeCCCCCccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcC--CCCEEEEEEE
Confidence 578999999998 799999999942 3689999999999999 999999983 4568999999
Q ss_pred ecCCCCCCCCCCCCeeEEEEEeCccccccCCCCCCCEEEEeecCCCCCCCCccccEEEEEE
Q 001703 67 QHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTI 127 (1024)
Q Consensus 67 d~d~~~~f~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl 127 (1024)
|++...+ ...+++||++.+||.++...+.......||+|+ .++. .+...|+|.+.+
T Consensus 81 D~~~~~~--~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~-k~~~--~s~v~G~~~l~~ 136 (137)
T cd08691 81 DKFAKSR--PIIRRFLGKLSIPVQRLLERHAIGDQELSYTLG-RRTP--TDHVSGQLTFRF 136 (137)
T ss_pred ecCCCCC--ccCCceEEEEEEEHHHhcccccCCceEEEEECC-cCCC--CCcEEEEEEEEe
Confidence 9871110 112799999999999998765555577899998 4443 367889998865
No 154
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=99.50 E-value=8.8e-14 Score=136.04 Aligned_cols=97 Identities=25% Similarity=0.502 Sum_probs=84.3
Q ss_pred EEEEEEEeecCC-----CCCcEEEEEEC----CeEEeeecccCCCCCeEeeEEEEEEecC---------------CCCeE
Q 001703 6 LYVYVLQGQDLL-----AKDSYVKVQIG----KHKSKSRILKNNSNPVWNEEFVFRVHNI---------------DDEEL 61 (1024)
Q Consensus 6 L~V~V~~Ar~L~-----~~DPyv~v~l~----~~~~rT~v~~~t~nP~WnE~f~f~v~~~---------------~~~~L 61 (1024)
|+|+|++|++|+ .+||||+|+++ ...++|++++++.||.|||+|.|.+... ....|
T Consensus 1 L~V~Vi~A~~L~~~~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~l 80 (137)
T cd08675 1 LSVRVLECRDLALKSNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSEL 80 (137)
T ss_pred CEEEEEEccCCCcccCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccEE
Confidence 689999999997 68999999998 6779999999999999999999997643 46789
Q ss_pred EEEEEecCCCCCCCCCCCCeeEEEEEeCccccccCCCCCCCEEEEeecC
Q 001703 62 VVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETP 110 (1024)
Q Consensus 62 ~v~V~d~d~~~~f~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~ 110 (1024)
.|+|||.+ . .++++|||++.++|.++... .....||+|...
T Consensus 81 ~i~V~d~~---~--~~~~~~IG~~~i~l~~l~~~---~~~~~W~~L~~~ 121 (137)
T cd08675 81 RVELWHAS---M--VSGDDFLGEVRIPLQGLQQA---GSHQAWYFLQPR 121 (137)
T ss_pred EEEEEcCC---c--CcCCcEEEEEEEehhhccCC---CcccceEecCCc
Confidence 99999999 3 46899999999999998753 346889999843
No 155
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=99.50 E-value=8.9e-14 Score=135.22 Aligned_cols=85 Identities=25% Similarity=0.458 Sum_probs=74.4
Q ss_pred CCcEEEEEEEEeecCC--------CCCcEEEEEECC-----eEEeeecccCCCCCeEeeEEEEEEe--cCCCCeEEEEEE
Q 001703 2 VSTRLYVYVLQGQDLL--------AKDSYVKVQIGK-----HKSKSRILKNNSNPVWNEEFVFRVH--NIDDEELVVSVF 66 (1024)
Q Consensus 2 ~~~~L~V~V~~Ar~L~--------~~DPyv~v~l~~-----~~~rT~v~~~t~nP~WnE~f~f~v~--~~~~~~L~v~V~ 66 (1024)
..++|.|.|++|+||. .+||||+|++.. .++||+++++++||+|||+|.|.++ ......|.|+||
T Consensus 13 ~~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~~~L~~~~L~~~V~ 92 (138)
T cd08407 13 AANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPSELLAASSVELEVL 92 (138)
T ss_pred CCCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECCHHHhCccEEEEEEE
Confidence 3578999999999998 279999999954 2579999999999999999999997 456788999999
Q ss_pred ecCCCCCCCCCCCCeeEEEEEeCcc
Q 001703 67 QHNDDSGLFGSSGELMGRVRVPVSS 91 (1024)
Q Consensus 67 d~d~~~~f~~~~d~~lG~~~i~L~~ 91 (1024)
|+| + .+++++||++.+++..
T Consensus 93 d~d---~--~~~~d~iG~v~lg~~~ 112 (138)
T cd08407 93 NQD---S--PGQSLPLGRCSLGLHT 112 (138)
T ss_pred eCC---C--CcCcceeceEEecCcC
Confidence 999 4 5799999999999865
No 156
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.50 E-value=1.4e-13 Score=132.90 Aligned_cols=98 Identities=26% Similarity=0.493 Sum_probs=84.0
Q ss_pred CcEEEEEEEEeecCC------CCCcEEEEEEC---CeEEeeecccCCCCCeEeeEEEEEE-e--cCCCCeEEEEEEecCC
Q 001703 3 STRLYVYVLQGQDLL------AKDSYVKVQIG---KHKSKSRILKNNSNPVWNEEFVFRV-H--NIDDEELVVSVFQHND 70 (1024)
Q Consensus 3 ~~~L~V~V~~Ar~L~------~~DPyv~v~l~---~~~~rT~v~~~t~nP~WnE~f~f~v-~--~~~~~~L~v~V~d~d~ 70 (1024)
.+.|.|+|++|+||+ .+||||++++. ..+.+|++++++.||.|||+|.|.+ + ......|.|+|||++
T Consensus 15 ~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~d~d- 93 (125)
T cd08386 15 ESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQVLDYD- 93 (125)
T ss_pred CCEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHHhCCCEEEEEEEeCC-
Confidence 578999999999997 68999999993 4568999999999999999999984 2 234578999999999
Q ss_pred CCCCCCCCCCeeEEEEEeCccccccCCCCCCCEEEEee
Q 001703 71 DSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLE 108 (1024)
Q Consensus 71 ~~~f~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~ 108 (1024)
+ .+++++||++.++|.++... .....|+.|.
T Consensus 94 --~--~~~~~~iG~~~i~l~~l~~~---~~~~~W~~l~ 124 (125)
T cd08386 94 --R--FSRNDPIGEVSLPLNKVDLT---EEQTFWKDLK 124 (125)
T ss_pred --C--CcCCcEeeEEEEecccccCC---CCcceEEecC
Confidence 4 56899999999999999864 3478899986
No 157
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.49 E-value=6.3e-14 Score=181.26 Aligned_cols=121 Identities=17% Similarity=0.235 Sum_probs=101.0
Q ss_pred CCCeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCE-EEeeecccCCCCCeEeEEEEEEeecCC-CCeEEEEEEecCCCC
Q 001703 533 GDGWVLTVALVEGVNLASSEMTGLSDPYVVFTCNGK-TRTSSVQLQTCDPQWHDILEFDAMEEP-PSVLDVEVFDFDGPF 610 (1024)
Q Consensus 533 ~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~-~~kT~~~~~t~nP~WnE~f~f~~~~~~-~~~L~v~V~D~d~~~ 610 (1024)
.-.|.|+|+|++|.||. +..|.+||||++++|++ ++||++++++.||+|||+|+|.+..++ ...|+|+|||+|. |
T Consensus 1977 ~~~G~L~V~V~~a~nl~--~~~~~sdPyv~l~~g~~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d~-f 2053 (2102)
T PLN03200 1977 CLPGSLTVTIKRGNNLK--QSMGNTNAFCKLTLGNGPPRQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKNT-F 2053 (2102)
T ss_pred hCCcceEEEEeeccccc--cccCCCCCeEEEEECCCCcccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecCc-c
Confidence 45689999999999998 44899999999999954 889999999999999999998854443 3579999999998 8
Q ss_pred CCCccceEEEEEcccccCCCccceEEEcccccccccc-ceeEEEEEEe
Q 001703 611 DQATSLGHAEINFLKHTSTELADMWVSLEGKLAQSAQ-SKVHLRIFLE 657 (1024)
Q Consensus 611 ~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~-g~l~l~~~~~ 657 (1024)
++| .||.++|+|.++..++....||+|.+++.+.++ -.|++.+.++
T Consensus 2054 ~kd-~~G~~~i~l~~vv~~~~~~~~~~L~~~~~k~G~~~~~~~e~~w~ 2100 (2102)
T PLN03200 2054 GKS-SLGKVTIQIDRVVMEGTYSGEYSLNPESNKDGSSRTLEIEFQWS 2100 (2102)
T ss_pred CCC-CCceEEEEHHHHhcCceeeeeeecCcccccCCCcceEEEEEEec
Confidence 555 999999999999999999999999975443322 3388777554
No 158
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=99.49 E-value=2.3e-13 Score=129.79 Aligned_cols=110 Identities=21% Similarity=0.392 Sum_probs=84.7
Q ss_pred EEEEEEEeecCC---CCCcEEEEEECCeE-EeeecccCCCCCeEeeEEEEEEecC--CCCeEEEEEEecCCCCCCCCCCC
Q 001703 6 LYVYVLQGQDLL---AKDSYVKVQIGKHK-SKSRILKNNSNPVWNEEFVFRVHNI--DDEELVVSVFQHNDDSGLFGSSG 79 (1024)
Q Consensus 6 L~V~V~~Ar~L~---~~DPyv~v~l~~~~-~rT~v~~~t~nP~WnE~f~f~v~~~--~~~~L~v~V~d~d~~~~f~~~~d 79 (1024)
|+|+|++|+||+ .+||||.+++++.+ ++|+++++ .||.|||+|.|.++.. ....|.|.+||.+ . ...+
T Consensus 2 L~v~vi~a~~l~~~~~~dpyv~v~~~~~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~---~--~~~~ 75 (117)
T cd08383 2 LRLRILEAKNLPSKGTRDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKR---S--KDRD 75 (117)
T ss_pred eEEEEEEecCCCcCCCCCceEEEEECCEEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecc---c--CCCe
Confidence 889999999998 79999999998754 89999999 9999999999998532 3457778888877 2 3456
Q ss_pred CeeEEEEEeCccccccCCCCCCCEEEEeecCCCCCCCCccccEEEEEEEE
Q 001703 80 ELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTISL 129 (1024)
Q Consensus 80 ~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~ 129 (1024)
.++|++.+. .+..+ .....||+|. +...+ ....|+|+|.+.|
T Consensus 76 ~~~g~v~l~--~~~~~---~~~~~w~~L~-~~~~~--~~~~G~l~l~~~~ 117 (117)
T cd08383 76 IVIGKVALS--KLDLG---QGKDEWFPLT-PVDPD--SEVQGSVRLRARY 117 (117)
T ss_pred eEEEEEEec--CcCCC---CcceeEEECc-cCCCC--CCcCceEEEEEEC
Confidence 677776554 44332 2367899998 44322 4578999999876
No 159
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.49 E-value=3.2e-14 Score=139.18 Aligned_cols=105 Identities=18% Similarity=0.299 Sum_probs=87.2
Q ss_pred CCeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEC---C---EEEeeecccCCCCCeEeEEEEEEeecC--CCCeEEEEEEe
Q 001703 534 DGWVLTVALVEGVNLASSEMTGLSDPYVVFTCN---G---KTRTSSVQLQTCDPQWHDILEFDAMEE--PPSVLDVEVFD 605 (1024)
Q Consensus 534 ~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~---~---~~~kT~~~~~t~nP~WnE~f~f~~~~~--~~~~L~v~V~D 605 (1024)
..+.|.|+|++|+||++++..|.+||||++.+. + .+++|+++++++||+|||+|.|++... ....|.|+|||
T Consensus 13 ~~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l~~~~L~~~V~~ 92 (138)
T cd08408 13 LTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALFQLSEVTLMFSVYN 92 (138)
T ss_pred CCCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHHHhCccEEEEEEEE
Confidence 456899999999999999999999999999994 2 256999999999999999999996432 34589999999
Q ss_pred cCCCCCCCccceEEEEEcccccCCCccceEEEccc
Q 001703 606 FDGPFDQATSLGHAEINFLKHTSTELADMWVSLEG 640 (1024)
Q Consensus 606 ~d~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~ 640 (1024)
+|. ++++++||++.+++..... .....|+.+..
T Consensus 93 ~~~-~~~~~~iG~v~l~~~~~~~-~~~~hW~~~l~ 125 (138)
T cd08408 93 KRK-MKRKEMIGWFSLGLNSSGE-EEEEHWNEMKE 125 (138)
T ss_pred CCC-CCCCcEEEEEEECCcCCCc-hHHHHHHHHHh
Confidence 998 8999999999998875332 23467877754
No 160
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=99.48 E-value=4.8e-13 Score=128.93 Aligned_cols=115 Identities=23% Similarity=0.382 Sum_probs=93.4
Q ss_pred cEEEEEEEEeecCC-----CCCcEEEEEECCe-EEeeecccCCCCCeEeeEEEEEEecCCCCeEEEEEEecCCCCCCCCC
Q 001703 4 TRLYVYVLQGQDLL-----AKDSYVKVQIGKH-KSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLFGS 77 (1024)
Q Consensus 4 ~~L~V~V~~Ar~L~-----~~DPyv~v~l~~~-~~rT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~~~f~~~ 77 (1024)
.+|.|+|++|+.+. .+||||++++++. .++|+++++++||.|||+|.|.+. ....|.|+|||++ . .+
T Consensus 2 ~~L~V~i~~a~l~~~~~~~~~dPyv~v~~~~~~~~kT~v~~~t~~P~Wne~f~~~~~--~~~~l~~~V~d~~---~--~~ 74 (125)
T cd04021 2 SQLQITVESAKLKSNSKSFKPDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLVT--PQSTLEFKVWSHH---T--LK 74 (125)
T ss_pred ceEEEEEEeeECCCCCcCCCCCeEEEEEECCcccEEeeeeCCCCCCccccEEEEEeC--CCCEEEEEEEeCC---C--CC
Confidence 57999999998444 6999999999877 799999999999999999999984 4679999999999 3 57
Q ss_pred CCCeeEEEEEeCccccccCCCCCCC--EEEEeecCCCCCCCCccccEEEEEE
Q 001703 78 SGELMGRVRVPVSSIAAEDNHMLPP--TWFSLETPKTRKFTNKDCGKILLTI 127 (1024)
Q Consensus 78 ~d~~lG~~~i~L~~l~~~~~~~~~~--~W~~L~~~~~~~~~~~~~G~I~lsl 127 (1024)
.+++||++.++|.++...+...... .|++|.++..+ .....|+|.+.+
T Consensus 75 ~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~G~~~~~~ 124 (125)
T cd04021 75 ADVLLGEASLDLSDILKNHNGKLENVKLTLNLSSENKG--SSVKVGELTVIL 124 (125)
T ss_pred CCcEEEEEEEEHHHhHhhcCCCccceEEEEEEEccCCC--cceeeeeEEEEe
Confidence 8999999999999988754433333 58999844421 146789988764
No 161
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.48 E-value=2e-13 Score=128.78 Aligned_cols=98 Identities=18% Similarity=0.380 Sum_probs=83.6
Q ss_pred CCCcEEEEEECCe-EEeeecccCCCCCeEeeEEEEEEecCCCCeEEEEEEecCCCCCCCCCCCCeeEEEEEeCccccccC
Q 001703 18 AKDSYVKVQIGKH-KSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAED 96 (1024)
Q Consensus 18 ~~DPyv~v~l~~~-~~rT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~~~f~~~~d~~lG~~~i~L~~l~~~~ 96 (1024)
.+||||+|+++++ ..+|++++++.||+|||+|.|.+.+.....|.|.|||.+ . . ++++||++.++|.++....
T Consensus 12 ~~dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~---~--~-~d~~iG~~~v~L~~l~~~~ 85 (111)
T cd04052 12 LLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDR---D--R-HDPVLGSVSISLNDLIDAT 85 (111)
T ss_pred CCCceEEEEECCEEEEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECC---C--C-CCCeEEEEEecHHHHHhhh
Confidence 5899999999875 589999999999999999999997666788999999999 3 4 8999999999999986432
Q ss_pred CCCCCCEEEEeecCCCCCCCCccccEEEEEEEEEe
Q 001703 97 NHMLPPTWFSLETPKTRKFTNKDCGKILLTISLNG 131 (1024)
Q Consensus 97 ~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~~~ 131 (1024)
.....||+|.. ...|+|++++.|.|
T Consensus 86 --~~~~~w~~L~~--------~~~G~i~~~~~~~p 110 (111)
T cd04052 86 --SVGQQWFPLSG--------NGQGRIRISALWKP 110 (111)
T ss_pred --hccceeEECCC--------CCCCEEEEEEEEec
Confidence 23678999982 35799999999976
No 162
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=99.48 E-value=1.4e-13 Score=131.79 Aligned_cols=86 Identities=29% Similarity=0.480 Sum_probs=77.1
Q ss_pred cEEEEEEEEeecCC-----CCCcEEEEEECCeEEeeecccCCCCCeEeeEEEEEE-ecCCCCeEEEEEEecCCCCCCCCC
Q 001703 4 TRLYVYVLQGQDLL-----AKDSYVKVQIGKHKSKSRILKNNSNPVWNEEFVFRV-HNIDDEELVVSVFQHNDDSGLFGS 77 (1024)
Q Consensus 4 ~~L~V~V~~Ar~L~-----~~DPyv~v~l~~~~~rT~v~~~t~nP~WnE~f~f~v-~~~~~~~L~v~V~d~d~~~~f~~~ 77 (1024)
++|+|+|++|++|+ .+||||+|++++.++||+++++++||+|||+|.|.. .......|.|+|||++ . .+
T Consensus 28 ~~L~V~V~~A~~L~~d~~g~~DPYVkV~~~~~~~kT~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d---~--~s 102 (127)
T cd04032 28 ATLTVTVLRATGLWGDYFTSTDGYVKVFFGGQEKRTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDRD---N--GW 102 (127)
T ss_pred EEEEEEEEECCCCCcCcCCCCCeEEEEEECCccccCceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeCC---C--CC
Confidence 68999999999998 689999999998899999999999999999999974 3346789999999999 3 57
Q ss_pred CCCeeEEEEEeCccccc
Q 001703 78 SGELMGRVRVPVSSIAA 94 (1024)
Q Consensus 78 ~d~~lG~~~i~L~~l~~ 94 (1024)
+|++||++.++|.....
T Consensus 103 ~dd~IG~~~i~l~~~~~ 119 (127)
T cd04032 103 DDDLLGTCSVVPEAGVH 119 (127)
T ss_pred CCCeeEEEEEEecCCce
Confidence 99999999999986653
No 163
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=99.48 E-value=5.6e-14 Score=137.60 Aligned_cols=104 Identities=16% Similarity=0.241 Sum_probs=87.4
Q ss_pred CeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----EEEeeecccCCCCCeEeEEEEEEeecC--CCCeEEEEEEecC
Q 001703 535 GWVLTVALVEGVNLASSEMTGLSDPYVVFTCNG-----KTRTSSVQLQTCDPQWHDILEFDAMEE--PPSVLDVEVFDFD 607 (1024)
Q Consensus 535 ~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~-----~~~kT~~~~~t~nP~WnE~f~f~~~~~--~~~~L~v~V~D~d 607 (1024)
.+.|.|+|++|+||++.+ .+.+||||++.+.. .+++|+++++++||+|||.|.|.+... ....|.|+|||.+
T Consensus 14 ~~~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~l~~~~L~~~V~~~~ 92 (137)
T cd08409 14 LNRLTVVVLRARGLRQLD-HAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSRQLDTASLSLSVMQSG 92 (137)
T ss_pred CCeEEEEEEEecCCCccc-CCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHHHhCccEEEEEEEeCC
Confidence 458999999999999999 88899999999852 366899999999999999999996432 2358999999999
Q ss_pred CCCCCCccceEEEEEcccccCCCccceEEEccc
Q 001703 608 GPFDQATSLGHAEINFLKHTSTELADMWVSLEG 640 (1024)
Q Consensus 608 ~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~ 640 (1024)
. ++++++||++.|.......+...+.|..+-.
T Consensus 93 ~-~~~~~~lG~v~ig~~~~~~~~~~~hW~~~~~ 124 (137)
T cd08409 93 G-VRKSKLLGRVVLGPFMYARGKELEHWNDMLS 124 (137)
T ss_pred C-CCCcceEEEEEECCcccCCChHHHHHHHHHh
Confidence 8 7999999999999766666666677777654
No 164
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=99.48 E-value=5.9e-13 Score=131.29 Aligned_cols=115 Identities=19% Similarity=0.347 Sum_probs=91.2
Q ss_pred EEEEEEEeec--CC------CCCcEEEEEE-----CCeEEeeecccCCCCCeEeeEEEEEEecC--------CCCeEEEE
Q 001703 6 LYVYVLQGQD--LL------AKDSYVKVQI-----GKHKSKSRILKNNSNPVWNEEFVFRVHNI--------DDEELVVS 64 (1024)
Q Consensus 6 L~V~V~~Ar~--L~------~~DPyv~v~l-----~~~~~rT~v~~~t~nP~WnE~f~f~v~~~--------~~~~L~v~ 64 (1024)
..++|..|++ |+ .+||||++++ ..++.||+++++|+||+|||+|.|.+... ....|.|+
T Consensus 4 ~el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~ 83 (155)
T cd08690 4 IELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFE 83 (155)
T ss_pred eEEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEE
Confidence 4566777777 44 5899999997 23579999999999999999999998522 24679999
Q ss_pred EEecCCCCCCCCCCCCeeEEEEEeCccccccCCCCCCCEEEEeecCCCCCCCCccccEEEEEEEEEec
Q 001703 65 VFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTISLNGK 132 (1024)
Q Consensus 65 V~d~d~~~~f~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~~~~ 132 (1024)
|||.+ .| ..+|++||++.++|..+.... ....|++|.+.+ ...+|+|++.+..-..
T Consensus 84 V~d~~---~f-~~~D~~iG~~~i~L~~l~~~~---~~~~~~~L~~~~-----k~~Gg~l~v~ir~r~p 139 (155)
T cd08690 84 VYHKG---GF-LRSDKLLGTAQVKLEPLETKC---EIHESVDLMDGR-----KATGGKLEVKVRLREP 139 (155)
T ss_pred EEeCC---Cc-ccCCCeeEEEEEEcccccccC---cceEEEEhhhCC-----CCcCCEEEEEEEecCC
Confidence 99999 43 357999999999999997642 356799987332 3578999999998654
No 165
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.47 E-value=5.8e-14 Score=156.47 Aligned_cols=123 Identities=22% Similarity=0.398 Sum_probs=103.0
Q ss_pred CCeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCEEEeeecccCCCCCeEeEEEEEEeecCCCCeEEEEEEecCCCC---
Q 001703 534 DGWVLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPF--- 610 (1024)
Q Consensus 534 ~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~~~~t~nP~WnE~f~f~~~~~~~~~L~v~V~D~d~~~--- 610 (1024)
|...++++|+.|.+|.++|..|++||||.+.+|+.+++|+++...+||+|||.|.|+ ..+....|++.|||.|..+
T Consensus 293 wsakitltvlcaqgl~akdktg~sdpyvt~qv~ktkrrtrti~~~lnpvw~ekfhfe-chnstdrikvrvwded~dlksk 371 (1283)
T KOG1011|consen 293 WSAKITLTVLCAQGLIAKDKTGKSDPYVTAQVGKTKRRTRTIHQELNPVWNEKFHFE-CHNSTDRIKVRVWDEDNDLKSK 371 (1283)
T ss_pred cceeeEEeeeecccceecccCCCCCCcEEEeecccchhhHhhhhccchhhhhheeee-ecCCCceeEEEEecCcccHHHH
Confidence 667899999999999999999999999999999999999999999999999999999 5677889999999998421
Q ss_pred -------CCCccceEEEEEcccccCCCccceEEEccccccc-cccceeEEEE--EEecc
Q 001703 611 -------DQATSLGHAEINFLKHTSTELADMWVSLEGKLAQ-SAQSKVHLRI--FLENN 659 (1024)
Q Consensus 611 -------~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~-~~~g~l~l~~--~~~~~ 659 (1024)
..|||+|++.|.+..+. +..+.||.|+...++ +.+|.|.|.| ++.+.
T Consensus 372 lrqkl~resddflgqtvievrtls--gemdvwynlekrtdksavsgairlhisveikge 428 (1283)
T KOG1011|consen 372 LRQKLTRESDDFLGQTVIEVRTLS--GEMDVWYNLEKRTDKSAVSGAIRLHISVEIKGE 428 (1283)
T ss_pred HHHHhhhcccccccceeEEEEecc--cchhhhcchhhccchhhccceEEEEEEEEEcCc
Confidence 46899999999999865 457899999874332 3455555544 55443
No 166
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=99.47 E-value=2.5e-13 Score=130.04 Aligned_cols=86 Identities=22% Similarity=0.421 Sum_probs=72.0
Q ss_pred CCcEEEEEEEEeecCC------CCCcEEEEEEC---C--eEEeeecccCCC-CCeEeeEEEEEEe-cCCCCeEEEEEEec
Q 001703 2 VSTRLYVYVLQGQDLL------AKDSYVKVQIG---K--HKSKSRILKNNS-NPVWNEEFVFRVH-NIDDEELVVSVFQH 68 (1024)
Q Consensus 2 ~~~~L~V~V~~Ar~L~------~~DPyv~v~l~---~--~~~rT~v~~~t~-nP~WnE~f~f~v~-~~~~~~L~v~V~d~ 68 (1024)
..++|.|.|++|+||+ .+||||+|++. + .++||+++++|+ ||+|||+|.|+++ +.....|.|+|||+
T Consensus 12 ~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~~v~l~v~v~d~ 91 (135)
T cd08692 12 VNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQEHGIQFLIKLYSR 91 (135)
T ss_pred cCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCchhheeEEEEEEEeC
Confidence 3578999999999998 45889999993 1 368999999995 6999999999997 34456788889998
Q ss_pred CCCCCCCCCCCCeeEEEEEeCccc
Q 001703 69 NDDSGLFGSSGELMGRVRVPVSSI 92 (1024)
Q Consensus 69 d~~~~f~~~~d~~lG~~~i~L~~l 92 (1024)
+ ..+++++||++.++....
T Consensus 92 ~-----~~~~n~~IG~v~lG~~~~ 110 (135)
T cd08692 92 S-----SVRRKHFLGQVWISSDSS 110 (135)
T ss_pred C-----CCcCCceEEEEEECCccC
Confidence 8 367999999999998653
No 167
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=99.47 E-value=2.5e-13 Score=136.60 Aligned_cols=99 Identities=28% Similarity=0.506 Sum_probs=83.8
Q ss_pred CCcEEEEEEEEeecCC------CCCcEEEEEEC-----CeEEeeecccCCCCCeEeeEEEEEEe---cCCCCeEEEEEEe
Q 001703 2 VSTRLYVYVLQGQDLL------AKDSYVKVQIG-----KHKSKSRILKNNSNPVWNEEFVFRVH---NIDDEELVVSVFQ 67 (1024)
Q Consensus 2 ~~~~L~V~V~~Ar~L~------~~DPyv~v~l~-----~~~~rT~v~~~t~nP~WnE~f~f~v~---~~~~~~L~v~V~d 67 (1024)
..+.|.|+|++|+||+ .+||||++++. ..++||++++++.||.|||+|.|.+. ......|.|+|||
T Consensus 25 ~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~d 104 (162)
T cd04020 25 STGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTVWD 104 (162)
T ss_pred CCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEEEEe
Confidence 3578999999999998 68999999983 35689999999999999999999842 3345689999999
Q ss_pred cCCCCCCCCCCCCeeEEEEEeCccccccCCCCCCCEEEEee
Q 001703 68 HNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLE 108 (1024)
Q Consensus 68 ~d~~~~f~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~ 108 (1024)
++ . .+++++||++.+++.++...+ ....|+.|.
T Consensus 105 ~d---~--~~~d~~lG~v~i~l~~~~~~~---~~~~w~~~~ 137 (162)
T cd04020 105 HD---K--LSSNDFLGGVRLGLGTGKSYG---QAVDWMDST 137 (162)
T ss_pred CC---C--CCCCceEEEEEEeCCccccCC---CccccccCC
Confidence 99 4 568999999999999987643 367898886
No 168
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=99.47 E-value=3.8e-13 Score=129.52 Aligned_cols=98 Identities=26% Similarity=0.429 Sum_probs=83.9
Q ss_pred CcEEEEEEEEeecCC-------CCCcEEEEEEC---CeEEeeecccCCCCCeEeeEEEEEEec--CCCCeEEEEEEecCC
Q 001703 3 STRLYVYVLQGQDLL-------AKDSYVKVQIG---KHKSKSRILKNNSNPVWNEEFVFRVHN--IDDEELVVSVFQHND 70 (1024)
Q Consensus 3 ~~~L~V~V~~Ar~L~-------~~DPyv~v~l~---~~~~rT~v~~~t~nP~WnE~f~f~v~~--~~~~~L~v~V~d~d~ 70 (1024)
.+.|.|+|++|+||+ .+||||++++. ...++|+++++++||+|||+|.|.++. .....|.|.|||.+
T Consensus 13 ~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~~l~~~~l~i~v~d~~- 91 (123)
T cd08390 13 EEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKELQRRTLRLSVYDVD- 91 (123)
T ss_pred CCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHHHhcccEEEEEEEECC-
Confidence 578999999999998 56999999984 345899999999999999999999862 33568999999999
Q ss_pred CCCCCCCCCCeeEEEEEeCccccccCCCCCCCEEEEee
Q 001703 71 DSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLE 108 (1024)
Q Consensus 71 ~~~f~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~ 108 (1024)
. .+++++||++.++|.++.... ....|++|+
T Consensus 92 --~--~~~~~~iG~~~i~L~~l~~~~---~~~~w~~L~ 122 (123)
T cd08390 92 --R--FSRHCIIGHVLFPLKDLDLVK---GGVVWRDLE 122 (123)
T ss_pred --c--CCCCcEEEEEEEeccceecCC---CceEEEeCC
Confidence 3 568999999999999998753 356899997
No 169
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=99.46 E-value=3.7e-13 Score=129.76 Aligned_cols=97 Identities=26% Similarity=0.469 Sum_probs=85.0
Q ss_pred cEEEEEEEEeecCC------CCCcEEEEEECCeEEeeecccC-CCCCeEeeEEEEEEecC---CCCeEEEEEEecCCCCC
Q 001703 4 TRLYVYVLQGQDLL------AKDSYVKVQIGKHKSKSRILKN-NSNPVWNEEFVFRVHNI---DDEELVVSVFQHNDDSG 73 (1024)
Q Consensus 4 ~~L~V~V~~Ar~L~------~~DPyv~v~l~~~~~rT~v~~~-t~nP~WnE~f~f~v~~~---~~~~L~v~V~d~d~~~~ 73 (1024)
+.|.|+|++|++|+ .+||||++++++...+|+++++ +.||.|||+|.|.+... ....|.|+|||.+ .
T Consensus 1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~---~ 77 (124)
T cd04049 1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKD---N 77 (124)
T ss_pred CeEEEEEEecCCCCCCCCCCCcCceEEEEECCEeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECc---c
Confidence 57999999999998 6899999999988899999885 99999999999999644 3578999999999 3
Q ss_pred CCCCCCCeeEEEEEeCccccccCCCCCCCEEEEee
Q 001703 74 LFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLE 108 (1024)
Q Consensus 74 f~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~ 108 (1024)
.+++++||++.++|.++...+ ..+.|+.|.
T Consensus 78 --~~~d~~iG~~~i~l~~l~~~~---~~~~~~~l~ 107 (124)
T cd04049 78 --FSDDDFIGEATIHLKGLFEEG---VEPGTAELV 107 (124)
T ss_pred --CCCCCeEEEEEEEhHHhhhCC---CCcCceEee
Confidence 468999999999999998753 357899998
No 170
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=99.46 E-value=3.4e-13 Score=132.57 Aligned_cols=86 Identities=34% Similarity=0.586 Sum_probs=79.0
Q ss_pred cEEEEEEEEeecCC-----CCCcEEEEEECCeEEeeecccCCCCCeEeeEEEEEEecCCCCeEEEEEEecCCCCCCCCCC
Q 001703 4 TRLYVYVLQGQDLL-----AKDSYVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLFGSS 78 (1024)
Q Consensus 4 ~~L~V~V~~Ar~L~-----~~DPyv~v~l~~~~~rT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~~~f~~~~ 78 (1024)
|.|+|+|++|+||+ .+||||++++++++.+|++++++.||+|||+|.|.+++ ....|.|+|||++ . .++
T Consensus 2 G~L~V~Vi~a~nL~~~d~~~sDPYV~v~~g~~~~kT~vvk~t~nP~WnE~f~f~i~~-~~~~l~~~V~D~d---~--~~~ 75 (145)
T cd04038 2 GLLKVRVVRGTNLAVRDFTSSDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVPN-PMAPLKLEVFDKD---T--FSK 75 (145)
T ss_pred eEEEEEEEeeECCCCCCCCCcCcEEEEEECCEEEEeeeEcCCCCCeecccEEEEecC-CCCEEEEEEEECC---C--CCC
Confidence 68999999999997 78999999999999999999999999999999999964 4888999999999 4 578
Q ss_pred CCeeEEEEEeCcccccc
Q 001703 79 GELMGRVRVPVSSIAAE 95 (1024)
Q Consensus 79 d~~lG~~~i~L~~l~~~ 95 (1024)
|++||++.+++.++...
T Consensus 76 dd~iG~a~i~l~~l~~~ 92 (145)
T cd04038 76 DDSMGEAEIDLEPLVEA 92 (145)
T ss_pred CCEEEEEEEEHHHhhhh
Confidence 99999999999998764
No 171
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.46 E-value=4.2e-13 Score=127.54 Aligned_cols=107 Identities=26% Similarity=0.438 Sum_probs=89.1
Q ss_pred EEEEEEEeecCC------CCCcEEEEEECCe-EEeeecccCCCCCeEeeEEEEEEecCCCCeEEEEEEecCCCCCCCCCC
Q 001703 6 LYVYVLQGQDLL------AKDSYVKVQIGKH-KSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLFGSS 78 (1024)
Q Consensus 6 L~V~V~~Ar~L~------~~DPyv~v~l~~~-~~rT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~~~f~~~~ 78 (1024)
|+|+|++|++|+ .+||||+|++++. .++|+++.++.+|.|||+|.|.+.....+.|.|+|||++ . .++
T Consensus 1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~~~~~~T~v~~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~---~--~~~ 75 (115)
T cd04040 1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWD---R--GGK 75 (115)
T ss_pred CEEEEEeeeCCCCCCCCCCCCCeEEEEECCCcceeeceecCCCCCcccccEEEEeccCCCCEEEEEEEeCC---C--CCC
Confidence 689999999998 5899999999754 489999999999999999999996556789999999999 3 568
Q ss_pred CCeeEEEEEeCccccccCCCCCCCEEEEeecCCCCCCCCccccEEEE
Q 001703 79 GELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILL 125 (1024)
Q Consensus 79 d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~l 125 (1024)
+++||++.+++.++..+ .....|++|. +++ ....|.|.+
T Consensus 76 ~~~iG~~~~~l~~l~~~---~~~~~~~~L~-~~g----~~~~~~~~~ 114 (115)
T cd04040 76 DDLLGSAYIDLSDLEPE---ETTELTLPLD-GQG----GGKLGAVFL 114 (115)
T ss_pred CCceEEEEEEHHHcCCC---CcEEEEEECc-CCC----CccCceEEc
Confidence 99999999999998764 2367899998 433 235666653
No 172
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.45 E-value=3.7e-13 Score=131.69 Aligned_cols=97 Identities=29% Similarity=0.517 Sum_probs=79.8
Q ss_pred CcEEEEEEEEeecCC------CCCcEEEEEECC------eEEeeecccCCCCCeEeeEEEEEEe--cCCCCeEEEEEEec
Q 001703 3 STRLYVYVLQGQDLL------AKDSYVKVQIGK------HKSKSRILKNNSNPVWNEEFVFRVH--NIDDEELVVSVFQH 68 (1024)
Q Consensus 3 ~~~L~V~V~~Ar~L~------~~DPyv~v~l~~------~~~rT~v~~~t~nP~WnE~f~f~v~--~~~~~~L~v~V~d~ 68 (1024)
.++|.|+|++|+||+ .+||||++++.. .++||++++++.||+|||+|.|.++ +.....|.|.|||.
T Consensus 14 ~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l~~~~L~~~V~~~ 93 (138)
T cd08408 14 TGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALFQLSEVTLMFSVYNK 93 (138)
T ss_pred CCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHHHhCccEEEEEEEEC
Confidence 578999999999998 689999999952 2479999999999999999999987 46678999999999
Q ss_pred CCCCCCCCCCCCeeEEEEEeCccccccCCCCCCCEEEEee
Q 001703 69 NDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLE 108 (1024)
Q Consensus 69 d~~~~f~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~ 108 (1024)
+ + .+++++||++.+++...... ....|+.+.
T Consensus 94 ~---~--~~~~~~iG~v~l~~~~~~~~----~~~hW~~~l 124 (138)
T cd08408 94 R---K--MKRKEMIGWFSLGLNSSGEE----EEEHWNEMK 124 (138)
T ss_pred C---C--CCCCcEEEEEEECCcCCCch----HHHHHHHHH
Confidence 9 4 57899999999988654321 123566554
No 173
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.45 E-value=4.2e-13 Score=154.50 Aligned_cols=125 Identities=21% Similarity=0.340 Sum_probs=107.3
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCcEEEEEEC---CEEEeeecccCCCCCeEeEEEEEEeec--CCCCeEEEEEEecCCCC
Q 001703 536 WVLTVALVEGVNLASSEMTGLSDPYVVFTCN---GKTRTSSVQLQTCDPQWHDILEFDAME--EPPSVLDVEVFDFDGPF 610 (1024)
Q Consensus 536 ~~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~---~~~~kT~~~~~t~nP~WnE~f~f~~~~--~~~~~L~v~V~D~d~~~ 610 (1024)
..|.|+|++|++|+.+|..|.+||||++++- +.+++|++.++|+||.|||+|.|.+.. .....|.+.|||+|+ |
T Consensus 167 ~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~tlnP~fnEtf~f~v~~~~l~~~~L~l~V~~~dr-f 245 (421)
T KOG1028|consen 167 NLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRKTLNPVFNETFRFEVPYEELSNRVLHLSVYDFDR-F 245 (421)
T ss_pred CEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeecCcCCccccceEeecCHHHhccCEEEEEEEecCC-c
Confidence 4799999999999999977889999999995 467899999999999999999999532 346699999999999 9
Q ss_pred CCCccceEEEEEcccccCCCccceEEEcccc--ccccccceeEEEEEEeccCC
Q 001703 611 DQATSLGHAEINFLKHTSTELADMWVSLEGK--LAQSAQSKVHLRIFLENNNG 661 (1024)
Q Consensus 611 ~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~~--~~~~~~g~l~l~~~~~~~~~ 661 (1024)
+++++||++.++|..+........|.+|... ......|+|.+.+.+.+..+
T Consensus 246 sr~~~iGev~~~l~~~~~~~~~~~w~~l~~~~~~~~~~~gel~~sL~Y~p~~g 298 (421)
T KOG1028|consen 246 SRHDFIGEVILPLGEVDLLSTTLFWKDLQPSSTDSEELAGELLLSLCYLPTAG 298 (421)
T ss_pred ccccEEEEEEecCccccccccceeeeccccccCCcccccceEEEEEEeecCCC
Confidence 9999999999999998887778899999874 22223379999998776644
No 174
>PF02893 GRAM: GRAM domain; InterPro: IPR004182 The GRAM domain is found in glucosyltransferases, myotubularins and other putative membrane-associated proteins. It is normally about 70 amino acids in length. It is thought to be an intracellular protein-binding or lipid-binding signalling domain, which has an important function in membrane-associated processes. Mutations in the GRAM domain of myotubularins cause a muscle disease, which suggests that the domain is essential for the full function of the enzyme []. Myotubularin-related proteins are a large subfamily of protein tyrosine phosphatases (PTPs) that dephosphorylate D3-phosphorylated inositol lipids [].; PDB: 1M7R_B 1LW3_A 1ZVR_A 1ZSQ_A.
Probab=99.45 E-value=7.2e-14 Score=119.46 Aligned_cols=67 Identities=45% Similarity=0.843 Sum_probs=48.4
Q ss_pred ccccccccCCCccccccceeeeeec-ccccccceeeeecEEEEEeccCCCeE-EEEEecccceeeEecc
Q 001703 689 STFQKLFALPPEEFLIKDFTCYLKR-KMPLQGRLFLSARIVGFYANLFGNKT-KFFFLWEDIEDIQILS 755 (1024)
Q Consensus 689 ~~f~~~f~l~~~e~l~~~~~c~~~~-~~~~~G~lyis~~~~cF~s~~~g~~~-~~~i~~~di~~i~k~~ 755 (1024)
+.|++.|+||.+|.|+.+|.|++.+ .++.+|+||||.+|+||+|+.++..+ +++|||.||.+|+|.+
T Consensus 1 ~~f~~~F~lp~~E~li~~~~c~l~~~~~~~~G~LyiT~~~lcF~s~~~~~~~~~~~ipl~~I~~i~k~~ 69 (69)
T PF02893_consen 1 EKFRKLFKLPEEERLIEEYSCALFKSKIPVQGRLYITNNYLCFYSNKFGSKTCKFVIPLSDIKSIEKET 69 (69)
T ss_dssp ----------TT--EEEEEEETTTEE---EEEEEEEESSEEEEEESSSSS-E-EEEEEGGGEEEEEEE-
T ss_pred CcccccccCCCCCeEEEEEEEEEECCccceeeEEEECCCEEEEEECCCCCceEEEEEEhHheeEEEEeC
Confidence 3689999999999999999999998 89999999999999999999999888 9999999999999863
No 175
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=99.43 E-value=6.4e-13 Score=125.19 Aligned_cols=88 Identities=18% Similarity=0.327 Sum_probs=75.6
Q ss_pred EEEEEeeCCCCCCCCCCCCcEEEEEECC------EEEeeecccCCCCCeEeEEEEEEee----cCCCCeEEEEEEecCCC
Q 001703 540 VALVEGVNLASSEMTGLSDPYVVFTCNG------KTRTSSVQLQTCDPQWHDILEFDAM----EEPPSVLDVEVFDFDGP 609 (1024)
Q Consensus 540 V~vi~a~~L~~~d~~g~~DPyv~v~~~~------~~~kT~~~~~t~nP~WnE~f~f~~~----~~~~~~L~v~V~D~d~~ 609 (1024)
+-.++|++|+..|..|.+||||+|++.+ ..++|+++++++||+|| +|.|.+. .+....|.|+|||+|.
T Consensus 4 ~~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~- 81 (110)
T cd04047 4 ELQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDS- 81 (110)
T ss_pred EEEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCC-
Confidence 4567999999999999999999999854 25899999999999999 7888742 1236799999999998
Q ss_pred CCCCccceEEEEEcccccCC
Q 001703 610 FDQATSLGHAEINFLKHTST 629 (1024)
Q Consensus 610 ~~~dd~lG~~~i~l~~l~~~ 629 (1024)
+++|++||++.+++.++...
T Consensus 82 ~~~d~~iG~~~~~l~~l~~~ 101 (110)
T cd04047 82 SGKHDLIGEFETTLDELLKS 101 (110)
T ss_pred CCCCcEEEEEEEEHHHHhcC
Confidence 89999999999999998744
No 176
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=99.43 E-value=6.7e-13 Score=129.65 Aligned_cols=96 Identities=22% Similarity=0.450 Sum_probs=80.4
Q ss_pred CcEEEEEEEEeecCC------CCCcEEEEEECC-----eEEeeecccCCCCCeEeeEEEEEEe--cCCCCeEEEEEEecC
Q 001703 3 STRLYVYVLQGQDLL------AKDSYVKVQIGK-----HKSKSRILKNNSNPVWNEEFVFRVH--NIDDEELVVSVFQHN 69 (1024)
Q Consensus 3 ~~~L~V~V~~Ar~L~------~~DPyv~v~l~~-----~~~rT~v~~~t~nP~WnE~f~f~v~--~~~~~~L~v~V~d~d 69 (1024)
.+.|.|+|++|+||+ .+||||+|++.+ .+.+|+++++++||+|||+|.|.+. ......|.|+|||.|
T Consensus 12 ~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~~~l~~~V~d~d 91 (133)
T cd08384 12 RRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAKKTLEITVWDKD 91 (133)
T ss_pred CCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhCCCEEEEEEEeCC
Confidence 578999999999998 689999999953 3589999999999999999999986 334678999999999
Q ss_pred CCCCCCCCCCCeeEEEEEeCccccccCCCCCCCEEEEee
Q 001703 70 DDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLE 108 (1024)
Q Consensus 70 ~~~~f~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~ 108 (1024)
. .+++++||++.+++.... .....|+++.
T Consensus 92 ---~--~~~~~~lG~~~i~l~~~~-----~~~~~W~~~l 120 (133)
T cd08384 92 ---I--GKSNDYIGGLQLGINAKG-----ERLRHWLDCL 120 (133)
T ss_pred ---C--CCCccEEEEEEEecCCCC-----chHHHHHHHH
Confidence 3 568999999999997522 2256788876
No 177
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=99.43 E-value=7.7e-13 Score=129.70 Aligned_cols=97 Identities=28% Similarity=0.473 Sum_probs=78.6
Q ss_pred CCcEEEEEEEEeecCC------CCCcEEEEEECC-----eEEeeecccCCCCCeEeeEEEEEEe--cCCCCeEEEEEEec
Q 001703 2 VSTRLYVYVLQGQDLL------AKDSYVKVQIGK-----HKSKSRILKNNSNPVWNEEFVFRVH--NIDDEELVVSVFQH 68 (1024)
Q Consensus 2 ~~~~L~V~V~~Ar~L~------~~DPyv~v~l~~-----~~~rT~v~~~t~nP~WnE~f~f~v~--~~~~~~L~v~V~d~ 68 (1024)
..++|.|+|++|++|+ .+||||+|+++. .+++|+++++++||.|||+|.|.++ ......|.|+|||+
T Consensus 13 ~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~v~d~ 92 (136)
T cd08402 13 TAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQIQKVHLIVTVLDY 92 (136)
T ss_pred CCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHHHhCCCEEEEEEEeC
Confidence 3578999999999998 689999999942 3578999999999999999999986 23346899999999
Q ss_pred CCCCCCCCCCCCeeEEEEEeCccccccCCCCCCCEEEEee
Q 001703 69 NDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLE 108 (1024)
Q Consensus 69 d~~~~f~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~ 108 (1024)
+ + .+++++||++.+++..... ....|+++.
T Consensus 93 ~---~--~~~~~~iG~~~i~~~~~~~-----~~~~W~~~~ 122 (136)
T cd08402 93 D---R--IGKNDPIGKVVLGCNATGA-----ELRHWSDML 122 (136)
T ss_pred C---C--CCCCceeEEEEECCccCCh-----HHHHHHHHH
Confidence 9 4 5789999999999976422 234565554
No 178
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.42 E-value=1.6e-12 Score=124.15 Aligned_cols=96 Identities=21% Similarity=0.329 Sum_probs=84.0
Q ss_pred cEEEEEEEEeecCC------CCCcEEEEEECC-eEEeeecccCCCCCeEeeEEEEEEecCCCCeEEEEEEecCCCCCCCC
Q 001703 4 TRLYVYVLQGQDLL------AKDSYVKVQIGK-HKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLFG 76 (1024)
Q Consensus 4 ~~L~V~V~~Ar~L~------~~DPyv~v~l~~-~~~rT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~~~f~~ 76 (1024)
+.|+|+|++|++|+ .+||||++++++ ..++|++++++.||.|||+|.|.+. ...+.|.|+|||++ . .
T Consensus 1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~-~~~~~L~v~v~d~~---~--~ 74 (120)
T cd04045 1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVT-SPNQKITLEVMDYE---K--V 74 (120)
T ss_pred CeEEEEEEeeECCCCccCCCCcCCEEEEEECCEEeeceeEECCCcCCccCceEEEEec-CCCCEEEEEEEECC---C--C
Confidence 57999999999999 789999999976 4599999999999999999999984 44579999999999 3 5
Q ss_pred CCCCeeEEEEEeCccccccCCCCCCCEEEEeec
Q 001703 77 SSGELMGRVRVPVSSIAAEDNHMLPPTWFSLET 109 (1024)
Q Consensus 77 ~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~ 109 (1024)
+++++||++.++|.++... ....||.|.+
T Consensus 75 ~~d~~IG~~~~~l~~l~~~----~~~~~~~~~~ 103 (120)
T cd04045 75 GKDRSLGSVEINVSDLIKK----NEDGKYVEYD 103 (120)
T ss_pred CCCCeeeEEEEeHHHhhCC----CCCceEEecC
Confidence 7889999999999999864 3577999983
No 179
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=99.42 E-value=7.3e-13 Score=129.24 Aligned_cols=90 Identities=24% Similarity=0.424 Sum_probs=77.8
Q ss_pred CcEEEEEEEEeecCC------CCCcEEEEEEC-------CeEEeeecccCCCCCeEeeEEEEEEec----CCCCeEEEEE
Q 001703 3 STRLYVYVLQGQDLL------AKDSYVKVQIG-------KHKSKSRILKNNSNPVWNEEFVFRVHN----IDDEELVVSV 65 (1024)
Q Consensus 3 ~~~L~V~V~~Ar~L~------~~DPyv~v~l~-------~~~~rT~v~~~t~nP~WnE~f~f~v~~----~~~~~L~v~V 65 (1024)
.+.|.|+|++|++|+ .+||||+|++. ..+++|+++++++||+|||+|.|.+.. .....|.|+|
T Consensus 15 ~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l~~~V 94 (133)
T cd04009 15 EQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALLLFTV 94 (133)
T ss_pred CCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechhhcccCCCEEEEEE
Confidence 468999999999998 68999999995 246899999999999999999999863 2467899999
Q ss_pred EecCCCCCCCCCCCCeeEEEEEeCccccccCC
Q 001703 66 FQHNDDSGLFGSSGELMGRVRVPVSSIAAEDN 97 (1024)
Q Consensus 66 ~d~d~~~~f~~~~d~~lG~~~i~L~~l~~~~~ 97 (1024)
||++ + .+++++||++.++|.++...++
T Consensus 95 ~d~d---~--~~~d~~iG~~~i~l~~l~~~~~ 121 (133)
T cd04009 95 KDYD---L--LGSNDFEGEAFLPLNDIPGVED 121 (133)
T ss_pred EecC---C--CCCCcEeEEEEEeHHHCCcccc
Confidence 9999 4 5689999999999999886433
No 180
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=99.42 E-value=1.8e-12 Score=120.74 Aligned_cols=83 Identities=20% Similarity=0.457 Sum_probs=69.2
Q ss_pred EEEEEEEeecCC-CCCcEEEEEECC-----eEEeeecccCCCCCeEeeEEEEEEecCCCCeEEEEEEecCCCC---CCCC
Q 001703 6 LYVYVLQGQDLL-AKDSYVKVQIGK-----HKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDS---GLFG 76 (1024)
Q Consensus 6 L~V~V~~Ar~L~-~~DPyv~v~l~~-----~~~rT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~~---~f~~ 76 (1024)
|.|+|++|+||. .+||||++.++. .+.+|+++++|+||+|||+|.|.++ ....|++.|||+..+. . ..
T Consensus 1 L~V~V~~A~~L~~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~--~s~~L~~~v~d~~~~~~~~d-~~ 77 (118)
T cd08686 1 LNVIVHSAQGFKQSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELE--GSQTLRILCYEKCYSKVKLD-GE 77 (118)
T ss_pred CEEEEEeCCCCCCCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeC--CCCEEEEEEEEccccccccc-cc
Confidence 689999999999 899999999953 3599999999999999999999994 5889999999983000 0 24
Q ss_pred CCCCeeEEEEEeCcc
Q 001703 77 SSGELMGRVRVPVSS 91 (1024)
Q Consensus 77 ~~d~~lG~~~i~L~~ 91 (1024)
++|++||++.+.|..
T Consensus 78 ~~d~~~G~g~i~Ld~ 92 (118)
T cd08686 78 GTDAIMGKGQIQLDP 92 (118)
T ss_pred CcccEEEEEEEEECH
Confidence 689999999987754
No 181
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.41 E-value=7.2e-13 Score=127.52 Aligned_cols=84 Identities=25% Similarity=0.437 Sum_probs=75.2
Q ss_pred EEEEEEEeecCC------CCCcEEEEEECCeE--EeeecccCCCCCeEeeEEEEEEecCCCCeEEEEEEecCCCCCCCCC
Q 001703 6 LYVYVLQGQDLL------AKDSYVKVQIGKHK--SKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLFGS 77 (1024)
Q Consensus 6 L~V~V~~Ar~L~------~~DPyv~v~l~~~~--~rT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~~~f~~~ 77 (1024)
|+|+|++|++|+ .+||||++++++.. .+|+++++++||+|||+|.|.+..+....|.|+|||++ . .+
T Consensus 2 lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~~kT~~v~~t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d---~--~~ 76 (124)
T cd04037 2 VRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATLPGNSILKISVMDYD---L--LG 76 (124)
T ss_pred EEEEEEECcCCCCCCCCCCCCcEEEEEECCeeccceeeEEECCCCCccceEEEEEecCCCCCEEEEEEEECC---C--CC
Confidence 799999999998 79999999998765 68888999999999999999986566789999999999 3 57
Q ss_pred CCCeeEEEEEeCccccc
Q 001703 78 SGELMGRVRVPVSSIAA 94 (1024)
Q Consensus 78 ~d~~lG~~~i~L~~l~~ 94 (1024)
++++||++.++|.+...
T Consensus 77 ~dd~iG~~~i~l~~~~~ 93 (124)
T cd04037 77 SDDLIGETVIDLEDRFF 93 (124)
T ss_pred CCceeEEEEEeeccccc
Confidence 89999999999988775
No 182
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=99.41 E-value=1.3e-12 Score=128.07 Aligned_cols=96 Identities=29% Similarity=0.456 Sum_probs=80.2
Q ss_pred CcEEEEEEEEeecCC------CCCcEEEEEECC-----eEEeeecccCCCCCeEeeEEEEEEe--cCCCCeEEEEEEecC
Q 001703 3 STRLYVYVLQGQDLL------AKDSYVKVQIGK-----HKSKSRILKNNSNPVWNEEFVFRVH--NIDDEELVVSVFQHN 69 (1024)
Q Consensus 3 ~~~L~V~V~~Ar~L~------~~DPyv~v~l~~-----~~~rT~v~~~t~nP~WnE~f~f~v~--~~~~~~L~v~V~d~d 69 (1024)
.+.|.|+|++|+||+ .+||||++++.. .+.+|+++++++||.|||+|.|.++ ......|.|+|||+|
T Consensus 14 ~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~~~~~l~~~v~d~d 93 (136)
T cd08404 14 TNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEELEDISVEFLVLDSD 93 (136)
T ss_pred CCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHHHhCCCEEEEEEEECC
Confidence 578999999999998 689999999942 2478999999999999999999986 235578999999999
Q ss_pred CCCCCCCCCCCeeEEEEEeCccccccCCCCCCCEEEEee
Q 001703 70 DDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLE 108 (1024)
Q Consensus 70 ~~~~f~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~ 108 (1024)
+ .+++++||++.+++.. .. .....|+.|.
T Consensus 94 ---~--~~~~~~iG~~~~~~~~-~~----~~~~~w~~l~ 122 (136)
T cd08404 94 ---R--VTKNEVIGRLVLGPKA-SG----SGGHHWKEVC 122 (136)
T ss_pred ---C--CCCCccEEEEEECCcC-CC----chHHHHHHHH
Confidence 4 5789999999999987 22 1256788876
No 183
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=99.41 E-value=1.2e-12 Score=127.85 Aligned_cols=98 Identities=28% Similarity=0.545 Sum_probs=77.4
Q ss_pred CCcEEEEEEEEeecCC------CCCcEEEEEECC-----eEEeeecccCCCCCeEeeEEEEEEe--cCCCCeEEEEEEec
Q 001703 2 VSTRLYVYVLQGQDLL------AKDSYVKVQIGK-----HKSKSRILKNNSNPVWNEEFVFRVH--NIDDEELVVSVFQH 68 (1024)
Q Consensus 2 ~~~~L~V~V~~Ar~L~------~~DPyv~v~l~~-----~~~rT~v~~~t~nP~WnE~f~f~v~--~~~~~~L~v~V~d~ 68 (1024)
..+.|.|+|++|++|+ .+||||++++.. .+++|+++++++||+|||+|.|.++ ......|.|+|||+
T Consensus 12 ~~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~~~~l~~~V~d~ 91 (135)
T cd08410 12 SAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEELENVSLVFTVYGH 91 (135)
T ss_pred CCCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHHHhCCCEEEEEEEeC
Confidence 4578999999999998 689999999832 3479999999999999999999986 33455799999999
Q ss_pred CCCCCCCCCCCCeeEEEEEeCccccccCCCCCCCEEEEee
Q 001703 69 NDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLE 108 (1024)
Q Consensus 69 d~~~~f~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~ 108 (1024)
| ..+++++||++.|........ ....|+.|.
T Consensus 92 d-----~~~~~~~iG~~~l~~~~~~~~----~~~~W~~l~ 122 (135)
T cd08410 92 N-----VKSSNDFIGRIVIGQYSSGPS----ETNHWRRML 122 (135)
T ss_pred C-----CCCCCcEEEEEEEcCccCCch----HHHHHHHHH
Confidence 9 357899999998754333221 235577665
No 184
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.40 E-value=1.4e-12 Score=127.84 Aligned_cols=86 Identities=29% Similarity=0.531 Sum_probs=74.2
Q ss_pred CCcEEEEEEEEeecCC------CCCcEEEEEEC--C---eEEeeecccCCCCCeEeeEEEEEEe--cCCCCeEEEEEEec
Q 001703 2 VSTRLYVYVLQGQDLL------AKDSYVKVQIG--K---HKSKSRILKNNSNPVWNEEFVFRVH--NIDDEELVVSVFQH 68 (1024)
Q Consensus 2 ~~~~L~V~V~~Ar~L~------~~DPyv~v~l~--~---~~~rT~v~~~t~nP~WnE~f~f~v~--~~~~~~L~v~V~d~ 68 (1024)
..++|.|+|++|+||+ .+||||+|++. + .+.+|++++++.||.|||+|.|.++ ......|.|+|||.
T Consensus 13 ~~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~~~~~~~l~~~v~d~ 92 (136)
T cd08405 13 TANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLERLRETTLIITVMDK 92 (136)
T ss_pred CCCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHHHhCCCEEEEEEEEC
Confidence 3578999999999998 68999999983 2 3579999999999999999999986 23457899999999
Q ss_pred CCCCCCCCCCCCeeEEEEEeCccc
Q 001703 69 NDDSGLFGSSGELMGRVRVPVSSI 92 (1024)
Q Consensus 69 d~~~~f~~~~d~~lG~~~i~L~~l 92 (1024)
+ + .+++++||++.+++.+.
T Consensus 93 ~---~--~~~~~~lG~~~i~~~~~ 111 (136)
T cd08405 93 D---R--LSRNDLIGKIYLGWKSG 111 (136)
T ss_pred C---C--CCCCcEeEEEEECCccC
Confidence 9 3 57899999999999875
No 185
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=99.40 E-value=1.1e-12 Score=127.79 Aligned_cols=100 Identities=28% Similarity=0.537 Sum_probs=85.4
Q ss_pred CcEEEEEEEEeecCC------CCCcEEEEEECC-----eEEeeecccCCCCCeEeeEEEEEEec-CCCCeEEEEEEecCC
Q 001703 3 STRLYVYVLQGQDLL------AKDSYVKVQIGK-----HKSKSRILKNNSNPVWNEEFVFRVHN-IDDEELVVSVFQHND 70 (1024)
Q Consensus 3 ~~~L~V~V~~Ar~L~------~~DPyv~v~l~~-----~~~rT~v~~~t~nP~WnE~f~f~v~~-~~~~~L~v~V~d~d~ 70 (1024)
.+.|+|+|++|++|+ .+||||+|++.+ ..++|++++++.||.|||+|.|.+.. .....|.|+|||++
T Consensus 12 ~~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~~~~l~v~v~d~~- 90 (131)
T cd04026 12 DNKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPADKDRRLSIEVWDWD- 90 (131)
T ss_pred CCEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchhcCCEEEEEEEECC-
Confidence 478999999999998 689999999963 56999999999999999999999752 24578999999998
Q ss_pred CCCCCCCCCCeeEEEEEeCccccccCCCCCCCEEEEeecCC
Q 001703 71 DSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPK 111 (1024)
Q Consensus 71 ~~~f~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~ 111 (1024)
. .+++++||++.++|.++... ....||+|.+..
T Consensus 91 --~--~~~~~~iG~~~~~l~~l~~~----~~~~w~~L~~~~ 123 (131)
T cd04026 91 --R--TTRNDFMGSLSFGVSELIKM----PVDGWYKLLNQE 123 (131)
T ss_pred --C--CCCcceeEEEEEeHHHhCcC----ccCceEECcCcc
Confidence 3 56899999999999999753 467899998443
No 186
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=99.40 E-value=1.1e-12 Score=129.72 Aligned_cols=93 Identities=27% Similarity=0.557 Sum_probs=79.6
Q ss_pred CCcEEEEEEEEeecCC------CCCcEEEEEECCe-----------------------------EEeeecccCCCCCeEe
Q 001703 2 VSTRLYVYVLQGQDLL------AKDSYVKVQIGKH-----------------------------KSKSRILKNNSNPVWN 46 (1024)
Q Consensus 2 ~~~~L~V~V~~Ar~L~------~~DPyv~v~l~~~-----------------------------~~rT~v~~~t~nP~Wn 46 (1024)
..+.|.|+|++|+||. .+||||+|+++.. .++|+++++++||.||
T Consensus 26 ~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~Wn 105 (153)
T cd08676 26 PIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLNPVWN 105 (153)
T ss_pred CeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCCCccc
Confidence 4578999999999997 7999999999531 3789999999999999
Q ss_pred eEEEEEEecCCCCeEEEEEEecCCCCCCCCCCCCeeEEEEEeCccccccCCCCCCCEEEEe
Q 001703 47 EEFVFRVHNIDDEELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSL 107 (1024)
Q Consensus 47 E~f~f~v~~~~~~~L~v~V~d~d~~~~f~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L 107 (1024)
|+|.|.+.......|.|+|||++ +++||++.+++.++... ....||+|
T Consensus 106 E~F~f~v~~~~~~~L~i~V~D~d---------d~~IG~v~i~l~~l~~~----~~d~W~~L 153 (153)
T cd08676 106 ETFRFEVEDVSNDQLHLDIWDHD---------DDFLGCVNIPLKDLPSC----GLDSWFKL 153 (153)
T ss_pred cEEEEEeccCCCCEEEEEEEecC---------CCeEEEEEEEHHHhCCC----CCCCeEeC
Confidence 99999996556789999999875 47999999999999832 25889987
No 187
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=99.39 E-value=1.9e-12 Score=126.85 Aligned_cols=86 Identities=33% Similarity=0.496 Sum_probs=73.9
Q ss_pred CcEEEEEEEEeecCC-----CCCcEEEEEECC-----eEEeeecccCCCCCeEeeEEEEEEe--cCCCCeEEEEEEecCC
Q 001703 3 STRLYVYVLQGQDLL-----AKDSYVKVQIGK-----HKSKSRILKNNSNPVWNEEFVFRVH--NIDDEELVVSVFQHND 70 (1024)
Q Consensus 3 ~~~L~V~V~~Ar~L~-----~~DPyv~v~l~~-----~~~rT~v~~~t~nP~WnE~f~f~v~--~~~~~~L~v~V~d~d~ 70 (1024)
.++|.|+|++|+||+ .+||||++++.. .+++|++++++.||+|||+|.|.++ +.....|.|+|||.+
T Consensus 14 ~~~L~V~V~~a~nL~~~~~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~l~~~~L~~~V~~~~- 92 (137)
T cd08409 14 LNRLTVVVLRARGLRQLDHAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSRQLDTASLSLSVMQSG- 92 (137)
T ss_pred CCeEEEEEEEecCCCcccCCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHHHhCccEEEEEEEeCC-
Confidence 578999999999998 589999999853 3579999999999999999999986 455578999999999
Q ss_pred CCCCCCCCCCeeEEEEEeCcccc
Q 001703 71 DSGLFGSSGELMGRVRVPVSSIA 93 (1024)
Q Consensus 71 ~~~f~~~~d~~lG~~~i~L~~l~ 93 (1024)
. .+++++||++.++.....
T Consensus 93 --~--~~~~~~lG~v~ig~~~~~ 111 (137)
T cd08409 93 --G--VRKSKLLGRVVLGPFMYA 111 (137)
T ss_pred --C--CCCcceEEEEEECCcccC
Confidence 3 578999999999865443
No 188
>PLN03008 Phospholipase D delta
Probab=99.39 E-value=2.1e-12 Score=153.58 Aligned_cols=103 Identities=23% Similarity=0.435 Sum_probs=86.3
Q ss_pred CCcEEEEEECCe-EEeeecccCCCCCeEeeEEEEEEecCCCCeEEEEEEecCCCCCCCCCCCCeeEEEEEeCccccccCC
Q 001703 19 KDSYVKVQIGKH-KSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDN 97 (1024)
Q Consensus 19 ~DPyv~v~l~~~-~~rT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~~~f~~~~d~~lG~~~i~L~~l~~~~~ 97 (1024)
+||||+|.+++. ..||+++++++||+|||+|.|.+.. ....|.|+|||.| . . ++++||++.|||.++..++
T Consensus 77 SDPYV~I~Lg~~rv~RTrVi~n~~NPvWNE~F~f~vah-~~s~L~f~VkD~D---~--~-gaD~IG~a~IPL~~L~~Ge- 148 (868)
T PLN03008 77 SDPYVTVVVPQATLARTRVLKNSQEPLWDEKFNISIAH-PFAYLEFQVKDDD---V--F-GAQIIGTAKIPVRDIASGE- 148 (868)
T ss_pred CCceEEEEECCcceeeEEeCCCCCCCCcceeEEEEecC-CCceEEEEEEcCC---c--c-CCceeEEEEEEHHHcCCCC-
Confidence 499999999876 4799999999999999999999964 4569999999999 4 3 4689999999999998853
Q ss_pred CCCCCEEEEeecCCCCCCCCccccEEEEEEEEEecC
Q 001703 98 HMLPPTWFSLETPKTRKFTNKDCGKILLTISLNGKG 133 (1024)
Q Consensus 98 ~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~~~~~ 133 (1024)
....|++|.+..+ ++ .+.+|+|+|+++|.+-.
T Consensus 149 --~vd~Wl~Ll~~~~-kp-~k~~~kl~v~lqf~pv~ 180 (868)
T PLN03008 149 --RISGWFPVLGASG-KP-PKAETAIFIDMKFTPFD 180 (868)
T ss_pred --ceEEEEEccccCC-CC-CCCCcEEEEEEEEEEcc
Confidence 3789999985443 32 45679999999999853
No 189
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=99.38 E-value=5.4e-12 Score=122.35 Aligned_cols=111 Identities=29% Similarity=0.508 Sum_probs=89.9
Q ss_pred cEEEEEEEEeecCC--------CCCcEEEEEEC------CeEEeeecccCCC-CCeEeeEEEEEEecCCCCeEEEEEEec
Q 001703 4 TRLYVYVLQGQDLL--------AKDSYVKVQIG------KHKSKSRILKNNS-NPVWNEEFVFRVHNIDDEELVVSVFQH 68 (1024)
Q Consensus 4 ~~L~V~V~~Ar~L~--------~~DPyv~v~l~------~~~~rT~v~~~t~-nP~WnE~f~f~v~~~~~~~L~v~V~d~ 68 (1024)
++|+|+|++|+||+ .+||||++++. ..+.+|+++.++. ||.|||+|.|.+.......|.|+|||.
T Consensus 2 ~~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~ 81 (128)
T cd00275 2 LTLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDE 81 (128)
T ss_pred eEEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEeC
Confidence 68999999999997 46999999993 4558999988765 999999999998645556899999999
Q ss_pred CCCCCCCCCCCCeeEEEEEeCccccccCCCCCCCEEEEeecCCCCCCCCccccEEEEEEEE
Q 001703 69 NDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTISL 129 (1024)
Q Consensus 69 d~~~~f~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~ 129 (1024)
+ . . ++++||++.++|.++.. ...|++|..+.. . ....|.|.+.+.+
T Consensus 82 ~---~--~-~~~~iG~~~~~l~~l~~------g~~~~~l~~~~~-~--~~~~~~l~v~~~~ 127 (128)
T cd00275 82 D---S--G-DDDFLGQACLPLDSLRQ------GYRHVPLLDSKG-E--PLELSTLFVHIDI 127 (128)
T ss_pred C---C--C-CCcEeEEEEEEhHHhcC------ceEEEEecCCCC-C--CCcceeEEEEEEE
Confidence 9 3 3 89999999999999854 346899974432 2 3457898888765
No 190
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=99.38 E-value=2.6e-12 Score=125.63 Aligned_cols=97 Identities=30% Similarity=0.471 Sum_probs=78.1
Q ss_pred CCcEEEEEEEEeecCC------CCCcEEEEEECC-----eEEeeecccCCCCCeEeeEEEEEEe--cCCCCeEEEEEEec
Q 001703 2 VSTRLYVYVLQGQDLL------AKDSYVKVQIGK-----HKSKSRILKNNSNPVWNEEFVFRVH--NIDDEELVVSVFQH 68 (1024)
Q Consensus 2 ~~~~L~V~V~~Ar~L~------~~DPyv~v~l~~-----~~~rT~v~~~t~nP~WnE~f~f~v~--~~~~~~L~v~V~d~ 68 (1024)
..+.|+|+|++|++|+ .+||||+|++.. .+++|+++++++||.|||+|.|.++ ......|.|+|||+
T Consensus 12 ~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~~~~l~~~v~d~ 91 (134)
T cd08403 12 TAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPENVDNVSLIIAVVDY 91 (134)
T ss_pred CCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHHHhCCCEEEEEEEEC
Confidence 4688999999999998 689999999842 2579999999999999999999986 23345799999999
Q ss_pred CCCCCCCCCCCCeeEEEEEeCccccccCCCCCCCEEEEee
Q 001703 69 NDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLE 108 (1024)
Q Consensus 69 d~~~~f~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~ 108 (1024)
+ + .+++++||++.+++..... ....|+.+.
T Consensus 92 ~---~--~~~~~~IG~~~l~~~~~~~-----~~~~w~~~~ 121 (134)
T cd08403 92 D---R--VGHNELIGVCRVGPNADGQ-----GREHWNEML 121 (134)
T ss_pred C---C--CCCCceeEEEEECCCCCCc-----hHHHHHHHH
Confidence 9 3 6789999999998763221 134566664
No 191
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=99.37 E-value=2.4e-12 Score=114.69 Aligned_cols=82 Identities=32% Similarity=0.553 Sum_probs=75.6
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEECC---EEEeeecccCCCCCeEeEEEEEEeecCCCCeEEEEEEecCCCCCCCc
Q 001703 538 LTVALVEGVNLASSEMTGLSDPYVVFTCNG---KTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQAT 614 (1024)
Q Consensus 538 L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~---~~~kT~~~~~t~nP~WnE~f~f~~~~~~~~~L~v~V~D~d~~~~~dd 614 (1024)
|+|+|++|+||+..+..+..||||++.+++ ..++|+++.++.+|.|||+|.|.+.......|.|+|||++. +++|+
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~-~~~~~ 79 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLDDPDLDSLSFEVWDKDS-FGKDE 79 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEESHGCGTEEEEEEEEETS-SSSEE
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeeccccceeeeeeeeeeecccccceEEEEEECCC-CCCCC
Confidence 789999999999988889999999999987 78999999999999999999999766666779999999998 78899
Q ss_pred cceEEE
Q 001703 615 SLGHAE 620 (1024)
Q Consensus 615 ~lG~~~ 620 (1024)
+||++.
T Consensus 80 ~iG~~~ 85 (85)
T PF00168_consen 80 LIGEVK 85 (85)
T ss_dssp EEEEEE
T ss_pred EEEEEC
Confidence 999984
No 192
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=99.37 E-value=1.6e-12 Score=148.37 Aligned_cols=162 Identities=20% Similarity=0.272 Sum_probs=128.9
Q ss_pred CcEEEEEEEEeecCC------CCCcEEEEEECCeE-EeeecccCCCCCeEeeEEEEEEecCCCCeEEEEEEecCCCCCCC
Q 001703 3 STRLYVYVLQGQDLL------AKDSYVKVQIGKHK-SKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLF 75 (1024)
Q Consensus 3 ~~~L~V~V~~Ar~L~------~~DPyv~v~l~~~~-~rT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~~~f~ 75 (1024)
...|+|+|.+|+||+ .+||||.|.+..+. .||.++.+++.|-|.|+|.|++ +.....|.|.|||.|
T Consensus 4 ~~sl~vki~E~knL~~~~~~g~~D~yC~v~lD~E~v~RT~tv~ksL~PF~gEe~~~~i-P~~F~~l~fYv~D~d------ 76 (800)
T KOG2059|consen 4 EQSLKVKIGEAKNLPSYGPSGMRDCYCTVNLDQEEVCRTATVEKSLCPFFGEEFYFEI-PRTFRYLSFYVWDRD------ 76 (800)
T ss_pred ccceeEEEeecccCCCCCCCCCcCcceEEeecchhhhhhhhhhhhcCCccccceEEec-CcceeeEEEEEeccc------
Confidence 467999999999999 78999999998765 9999999999999999999999 488899999999999
Q ss_pred CCCCCeeEEEEEeCccccccCCCCCCCEEEEeecCCCCCCCCccccEEEEEEEEEecC--CeeeEEEEEeeccCCCCCCC
Q 001703 76 GSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTISLNGKG--HNLSSNRLLYLHSNVSSNES 153 (1024)
Q Consensus 76 ~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~~~~~--~~l~v~v~~~~~~~L~~~~~ 153 (1024)
+++|+.||.+.|.=.++...++ .+.|+.|. +-+.. ....|+|+|.+.+.+.. ..+...+++. +.+-+..
T Consensus 77 ~~~D~~IGKvai~re~l~~~~~---~d~W~~L~-~VD~d--sEVQG~v~l~l~~~e~~~~~~~~c~~L~~--r~~~P~~- 147 (800)
T KOG2059|consen 77 LKRDDIIGKVAIKREDLHMYPG---KDTWFSLQ-PVDPD--SEVQGKVHLELALTEAIQSSGLVCHVLKT--RQGLPII- 147 (800)
T ss_pred cccccccceeeeeHHHHhhCCC---Cccceecc-ccCCC--hhhceeEEEEEEeccccCCCcchhhhhhh--cccCcee-
Confidence 6899999999998888876543 77899998 54433 67899999999998753 3444455554 3443333
Q ss_pred CCCCCCeEEEEecCCCCCCccccccccc
Q 001703 154 KELEDPCVLSHDVSCSKAPCLDVTEGNH 181 (1024)
Q Consensus 154 ~g~sdp~vkv~l~~~~~~~~~~~~~~~~ 181 (1024)
++.+|||+++.+....+-.. ++|+.++
T Consensus 148 ~~~~dp~~~v~~~g~~~~~~-~~T~~~k 174 (800)
T KOG2059|consen 148 NGQCDPFARVTLCGPSKLKE-KKTKVKK 174 (800)
T ss_pred CCCCCcceEEeecccchhhc-cccceee
Confidence 35599999998877766444 4454443
No 193
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=99.36 E-value=2.4e-13 Score=146.47 Aligned_cols=97 Identities=28% Similarity=0.560 Sum_probs=86.3
Q ss_pred CcEEEEEEEEeecCC------CCCcEEEEEEC-----CeEEeeecccCCCCCeEeeEEEEEEe-cCCCCeEEEEEEecCC
Q 001703 3 STRLYVYVLQGQDLL------AKDSYVKVQIG-----KHKSKSRILKNNSNPVWNEEFVFRVH-NIDDEELVVSVFQHND 70 (1024)
Q Consensus 3 ~~~L~V~V~~Ar~L~------~~DPyv~v~l~-----~~~~rT~v~~~t~nP~WnE~f~f~v~-~~~~~~L~v~V~d~d~ 70 (1024)
...|.|+|.+|+||. .+||||++++- ..+++|++++.++||+|||+|+|++. ....+.|.|+|||+|
T Consensus 179 ~~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf~Lkp~DkdrRlsiEvWDWD- 257 (683)
T KOG0696|consen 179 RDVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTFKLKPSDKDRRLSIEVWDWD- 257 (683)
T ss_pred CceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCccccceeEEecccccccceeEEEEeccc-
Confidence 457999999999998 79999999993 34699999999999999999999975 667789999999999
Q ss_pred CCCCCCCCCCeeEEEEEeCccccccCCCCCCCEEEEee
Q 001703 71 DSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLE 108 (1024)
Q Consensus 71 ~~~f~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~ 108 (1024)
+ .+++||+|...+.+++|... +...||.|.
T Consensus 258 --r--TsRNDFMGslSFgisEl~K~----p~~GWyKlL 287 (683)
T KOG0696|consen 258 --R--TSRNDFMGSLSFGISELQKA----PVDGWYKLL 287 (683)
T ss_pred --c--cccccccceecccHHHHhhc----chhhHHHHh
Confidence 5 68999999999999999874 467899998
No 194
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=99.34 E-value=3e-12 Score=122.66 Aligned_cols=95 Identities=19% Similarity=0.297 Sum_probs=77.4
Q ss_pred EEEeecCC------CCCcEEEEEECCe-------EEeeecccCCCCCeEeeEEEEEEecCCCCeEEEEEEecCCCCCCCC
Q 001703 10 VLQGQDLL------AKDSYVKVQIGKH-------KSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLFG 76 (1024)
Q Consensus 10 V~~Ar~L~------~~DPyv~v~l~~~-------~~rT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~~~f~~ 76 (1024)
.++|++|+ .+||||+|++.+. .++|+++++++||+|||+|.|.+.......|.|+|||+|.... ..
T Consensus 6 ~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~~-~~ 84 (120)
T cd04048 6 SISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKSK-DL 84 (120)
T ss_pred EEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEecCCcC-CC
Confidence 47899998 6899999999654 3899999999999999999998754566789999999992000 04
Q ss_pred CCCCeeEEEEEeCccccccCCCCCCCEEEEee
Q 001703 77 SSGELMGRVRVPVSSIAAEDNHMLPPTWFSLE 108 (1024)
Q Consensus 77 ~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~ 108 (1024)
+++++||++.+++.++...++ ...|++|.
T Consensus 85 ~~~d~iG~~~i~l~~l~~~~~---~~~~~~l~ 113 (120)
T cd04048 85 SDHDFLGEAECTLGEIVSSPG---QKLTLPLK 113 (120)
T ss_pred CCCcEEEEEEEEHHHHhcCCC---cEEEEEcc
Confidence 689999999999999987533 55688884
No 195
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=99.32 E-value=9.8e-12 Score=121.57 Aligned_cols=97 Identities=31% Similarity=0.469 Sum_probs=82.2
Q ss_pred CCcEEEEEEEEeecCC------CCCcEEEEEECCe-----EEeeecccCCCCCeEeeEEEEEEecC--CCCeEEEEEEec
Q 001703 2 VSTRLYVYVLQGQDLL------AKDSYVKVQIGKH-----KSKSRILKNNSNPVWNEEFVFRVHNI--DDEELVVSVFQH 68 (1024)
Q Consensus 2 ~~~~L~V~V~~Ar~L~------~~DPyv~v~l~~~-----~~rT~v~~~t~nP~WnE~f~f~v~~~--~~~~L~v~V~d~ 68 (1024)
..++|.|+|++|+||+ .+||||++++.+. +++|++++++.||.|||+|.|.+... ....|.|+|||.
T Consensus 12 ~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l~~~~l~~~v~d~ 91 (134)
T cd00276 12 TAERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLEEVSLVITVVDK 91 (134)
T ss_pred CCCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHHhCCcEEEEEEEec
Confidence 4689999999999998 6899999999642 57999999999999999999998632 368899999999
Q ss_pred CCCCCCCCCCCCeeEEEEEeCccccccCCCCCCCEEEEee
Q 001703 69 NDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLE 108 (1024)
Q Consensus 69 d~~~~f~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~ 108 (1024)
+ + .+++++||++.+++.+ .+ .....|++|.
T Consensus 92 ~---~--~~~~~~lG~~~i~l~~--~~---~~~~~W~~l~ 121 (134)
T cd00276 92 D---S--VGRNEVIGQVVLGPDS--GG---EELEHWNEML 121 (134)
T ss_pred C---C--CCCCceeEEEEECCCC--CC---cHHHHHHHHH
Confidence 9 3 4689999999999998 22 2367799887
No 196
>smart00568 GRAM domain in glucosyltransferases, myotubularins and other putative membrane-associated proteins.
Probab=99.30 E-value=3.6e-12 Score=106.11 Aligned_cols=58 Identities=43% Similarity=0.687 Sum_probs=55.9
Q ss_pred CCCccccccceeeeeecccccccceeeeecEEEEEeccCCCeE-EEEEecccceeeEec
Q 001703 697 LPPEEFLIKDFTCYLKRKMPLQGRLFLSARIVGFYANLFGNKT-KFFFLWEDIEDIQIL 754 (1024)
Q Consensus 697 l~~~e~l~~~~~c~~~~~~~~~G~lyis~~~~cF~s~~~g~~~-~~~i~~~di~~i~k~ 754 (1024)
||++|.|+++|.|++.+.++.+|+||+|++++||+|+.+|+.+ +++||+.||.+|+|.
T Consensus 2 l~~~E~l~~~~~C~l~~~~~~~G~lyiT~~~l~F~S~~~~~~~~~~~ipl~~I~~i~k~ 60 (61)
T smart00568 2 LPEEEKLIADYSCYLSRDGPVQGRLYISNYRLCFRSDLPGKLTPKVVIPLADITRIEKS 60 (61)
T ss_pred cCCCcEEEEEEEeEECCCccccEEEEEECCEEEEEccCCCCeeEEEEEEHHHeeEEEEC
Confidence 7899999999999999999999999999999999999999988 999999999999986
No 197
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.27 E-value=5.2e-12 Score=141.13 Aligned_cols=121 Identities=34% Similarity=0.617 Sum_probs=101.5
Q ss_pred CcEEEEEEEEeecCC------CCCcEEEEEECCeEEeeecccCCCCCeEeeEEEEEEecCCCCeEEEEEEecCCCC----
Q 001703 3 STRLYVYVLQGQDLL------AKDSYVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDS---- 72 (1024)
Q Consensus 3 ~~~L~V~V~~Ar~L~------~~DPyv~v~l~~~~~rT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~~---- 72 (1024)
+..+.++|++|.+|. ++||||.+++++.+.||+++...+||+|||.|.|+++ .....+.|.|||.|.+.
T Consensus 294 sakitltvlcaqgl~akdktg~sdpyvt~qv~ktkrrtrti~~~lnpvw~ekfhfech-nstdrikvrvwded~dlkskl 372 (1283)
T KOG1011|consen 294 SAKITLTVLCAQGLIAKDKTGKSDPYVTAQVGKTKRRTRTIHQELNPVWNEKFHFECH-NSTDRIKVRVWDEDNDLKSKL 372 (1283)
T ss_pred ceeeEEeeeecccceecccCCCCCCcEEEeecccchhhHhhhhccchhhhhheeeeec-CCCceeEEEEecCcccHHHHH
Confidence 467899999999998 7999999999999999999999999999999999994 78889999999999443
Q ss_pred --CCCCCCCCeeEEEEEeCccccccCCCCCCCEEEEeecCCCCCCCCccccEEEEEEEEEec
Q 001703 73 --GLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTISLNGK 132 (1024)
Q Consensus 73 --~f~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~~~~ 132 (1024)
++...+|||||+..|.+..+... .+.||+|+ .+..+ +...|-|+|.+..+-.
T Consensus 373 rqkl~resddflgqtvievrtlsge-----mdvwynle-krtdk--savsgairlhisveik 426 (1283)
T KOG1011|consen 373 RQKLTRESDDFLGQTVIEVRTLSGE-----MDVWYNLE-KRTDK--SAVSGAIRLHISVEIK 426 (1283)
T ss_pred HHHhhhcccccccceeEEEEecccc-----hhhhcchh-hccch--hhccceEEEEEEEEEc
Confidence 11224789999999998888754 67899999 55444 5778988888877643
No 198
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.26 E-value=3e-11 Score=116.23 Aligned_cols=88 Identities=19% Similarity=0.455 Sum_probs=75.3
Q ss_pred CCcEEEEEEEEeecCC------CCCcEEEEEEC-----CeEEeeecccCCCCCeEeeEEEEE-Ee--cCCCCeEEEEEEe
Q 001703 2 VSTRLYVYVLQGQDLL------AKDSYVKVQIG-----KHKSKSRILKNNSNPVWNEEFVFR-VH--NIDDEELVVSVFQ 67 (1024)
Q Consensus 2 ~~~~L~V~V~~Ar~L~------~~DPyv~v~l~-----~~~~rT~v~~~t~nP~WnE~f~f~-v~--~~~~~~L~v~V~d 67 (1024)
..+.|.|+|++|++|+ .+||||++++. ...++|++++++.||.|||+|.|. +. +.....|.|+|||
T Consensus 13 ~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~~v~d 92 (123)
T cd04035 13 ANSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEEDIQRKTLRLLVLD 92 (123)
T ss_pred CCCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHHhCCCEEEEEEEE
Confidence 3578999999999998 68999999984 236899999999999999999996 42 2345789999999
Q ss_pred cCCCCCCCCCCCCeeEEEEEeCcccccc
Q 001703 68 HNDDSGLFGSSGELMGRVRVPVSSIAAE 95 (1024)
Q Consensus 68 ~d~~~~f~~~~d~~lG~~~i~L~~l~~~ 95 (1024)
.+ + . ++++||++.++|.++...
T Consensus 93 ~~---~--~-~~~~iG~~~i~l~~l~~~ 114 (123)
T cd04035 93 ED---R--F-GNDFLGETRIPLKKLKPN 114 (123)
T ss_pred cC---C--c-CCeeEEEEEEEcccCCCC
Confidence 99 3 4 789999999999999875
No 199
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=99.24 E-value=1.6e-11 Score=140.42 Aligned_cols=119 Identities=23% Similarity=0.283 Sum_probs=106.2
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-EEEeeecccCCCCCeEeEEEEEEeecCCCCeEEEEEEecCCCCCCCcc
Q 001703 537 VLTVALVEGVNLASSEMTGLSDPYVVFTCNG-KTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQATS 615 (1024)
Q Consensus 537 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~-~~~kT~~~~~t~nP~WnE~f~f~~~~~~~~~L~v~V~D~d~~~~~dd~ 615 (1024)
-|.|+|.+|+||++.+..|.+||||.|.++. ...+|.++.++|.|-|.|+|.|+ .+..-..|.|-|||.|. ++|+.
T Consensus 6 sl~vki~E~knL~~~~~~g~~D~yC~v~lD~E~v~RT~tv~ksL~PF~gEe~~~~-iP~~F~~l~fYv~D~d~--~~D~~ 82 (800)
T KOG2059|consen 6 SLKVKIGEAKNLPSYGPSGMRDCYCTVNLDQEEVCRTATVEKSLCPFFGEEFYFE-IPRTFRYLSFYVWDRDL--KRDDI 82 (800)
T ss_pred ceeEEEeecccCCCCCCCCCcCcceEEeecchhhhhhhhhhhhcCCccccceEEe-cCcceeeEEEEEecccc--ccccc
Confidence 5899999999999999999999999999986 56799999999999999999999 45556689999999994 99999
Q ss_pred ceEEEEEcccccCCCccceEEEccc-cccccccceeEEEEEEec
Q 001703 616 LGHAEINFLKHTSTELADMWVSLEG-KLAQSAQSKVHLRIFLEN 658 (1024)
Q Consensus 616 lG~~~i~l~~l~~~~~~~~w~~L~~-~~~~~~~g~l~l~~~~~~ 658 (1024)
||.+.|.=.++......+.|+.|.. ..+...+|++||++.+..
T Consensus 83 IGKvai~re~l~~~~~~d~W~~L~~VD~dsEVQG~v~l~l~~~e 126 (800)
T KOG2059|consen 83 IGKVAIKREDLHMYPGKDTWFSLQPVDPDSEVQGKVHLELALTE 126 (800)
T ss_pred cceeeeeHHHHhhCCCCccceeccccCCChhhceeEEEEEEecc
Confidence 9999999999888788899999987 455567999999998654
No 200
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=99.24 E-value=5e-11 Score=108.98 Aligned_cols=100 Identities=32% Similarity=0.604 Sum_probs=89.0
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEECC-EEEeeecccCCCCCeEeEEEEEEeecCCCCeEEEEEEecCCCCCCCccc
Q 001703 538 LTVALVEGVNLASSEMTGLSDPYVVFTCNG-KTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQATSL 616 (1024)
Q Consensus 538 L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~-~~~kT~~~~~t~nP~WnE~f~f~~~~~~~~~L~v~V~D~d~~~~~dd~l 616 (1024)
|.|++++|++|......+..||||.+.+.+ ...+|+++.++.||.|||.|.|.+.......|.|+|||++. .+.+.+|
T Consensus 1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~-~~~~~~i 79 (102)
T cd00030 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKDR-FSKDDFL 79 (102)
T ss_pred CEEEEEeeeCCCCcCCCCCCCcEEEEEeccCceEecceeCCCCCCcccceEEEEccCCCCCEEEEEEEecCC-CCCCcee
Confidence 478999999999877778999999999998 88999999999999999999999655457799999999998 6778999
Q ss_pred eEEEEEccccc-CCCccceEEEc
Q 001703 617 GHAEINFLKHT-STELADMWVSL 638 (1024)
Q Consensus 617 G~~~i~l~~l~-~~~~~~~w~~L 638 (1024)
|++.+++..+. .......|++|
T Consensus 80 g~~~~~l~~l~~~~~~~~~~~~l 102 (102)
T cd00030 80 GEVEIPLSELLDSGKEGELWLPL 102 (102)
T ss_pred EEEEEeHHHhhhcCCcCcceecC
Confidence 99999999988 77778888876
No 201
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.22 E-value=2.5e-11 Score=157.68 Aligned_cols=114 Identities=18% Similarity=0.428 Sum_probs=95.6
Q ss_pred CcEEEEEEEEeecCC----CCCcEEEEEECCe-EEeeecccCCCCCeEeeEEEEEEecC-CCCeEEEEEEecCCCCCCCC
Q 001703 3 STRLYVYVLQGQDLL----AKDSYVKVQIGKH-KSKSRILKNNSNPVWNEEFVFRVHNI-DDEELVVSVFQHNDDSGLFG 76 (1024)
Q Consensus 3 ~~~L~V~V~~Ar~L~----~~DPyv~v~l~~~-~~rT~v~~~t~nP~WnE~f~f~v~~~-~~~~L~v~V~d~d~~~~f~~ 76 (1024)
-|.|+|+|++|+||. .+||||++.++++ +.||++++++.||+|||+|.|.+.++ .+..|.++|||+| .|
T Consensus 1979 ~G~L~V~V~~a~nl~~~~~~sdPyv~l~~g~~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d---~f-- 2053 (2102)
T PLN03200 1979 PGSLTVTIKRGNNLKQSMGNTNAFCKLTLGNGPPRQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKN---TF-- 2053 (2102)
T ss_pred CcceEEEEeeccccccccCCCCCeEEEEECCCCcccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecC---cc--
Confidence 478999999999999 7899999999965 78999999999999999999887643 4577999999999 53
Q ss_pred CCCCeeEEEEEeCccccccCCCCCCCEEEEeecCCCCCCCCccccE---EEEEEEEEe
Q 001703 77 SSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGK---ILLTISLNG 131 (1024)
Q Consensus 77 ~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~---I~lsl~~~~ 131 (1024)
.++.||++.|+|.++..++ ....||+|. ++ ++..|+ |++.+.|.+
T Consensus 2054 -~kd~~G~~~i~l~~vv~~~---~~~~~~~L~-~~-----~~k~G~~~~~~~e~~w~~ 2101 (2102)
T PLN03200 2054 -GKSSLGKVTIQIDRVVMEG---TYSGEYSLN-PE-----SNKDGSSRTLEIEFQWSN 2101 (2102)
T ss_pred -CCCCCceEEEEHHHHhcCc---eeeeeeecC-cc-----cccCCCcceEEEEEEecC
Confidence 4559999999999999753 367899998 32 234677 999998854
No 202
>PLN02223 phosphoinositide phospholipase C
Probab=99.18 E-value=1.9e-10 Score=132.27 Aligned_cols=117 Identities=16% Similarity=0.211 Sum_probs=95.0
Q ss_pred eEEEEEEEEeeCCCCC-----CCCCCCCcEEEEEECC-----EEEeeecccCCCCCeEeEEEEEEeecCCCCeEEEEEEe
Q 001703 536 WVLTVALVEGVNLASS-----EMTGLSDPYVVFTCNG-----KTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFD 605 (1024)
Q Consensus 536 ~~L~V~vi~a~~L~~~-----d~~g~~DPyv~v~~~~-----~~~kT~~~~~t~nP~WnE~f~f~~~~~~~~~L~v~V~D 605 (1024)
..|+|+|+.|.+++.. +.....||||+|.+.| .+++|++..++.||+|||+|+|.+..+.-..|.|+|+|
T Consensus 409 ~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PELAlLrf~V~D 488 (537)
T PLN02223 409 KILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDLALISFEVYD 488 (537)
T ss_pred eEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCceEEEEEEEe
Confidence 4799999999987521 2245689999999964 35678888899999999999999877777789999999
Q ss_pred cCCCCCCCccceEEEEEcccccCCCccceEEEcccccccc-ccceeEEEEEE
Q 001703 606 FDGPFDQATSLGHAEINFLKHTSTELADMWVSLEGKLAQS-AQSKVHLRIFL 656 (1024)
Q Consensus 606 ~d~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~-~~g~l~l~~~~ 656 (1024)
+|. .+.|+|+|++.||+..+..|.. +++|..+.+.. ...+|.+++.+
T Consensus 489 ~D~-~~~ddfiGQ~~LPv~~Lr~GyR---~VpL~~~~g~~l~~~~Ll~~f~~ 536 (537)
T PLN02223 489 YEV-STADAFCGQTCLPVSELIEGIR---AVPLYDERGKACSSTMLLTRFKW 536 (537)
T ss_pred cCC-CCCCcEEEEEecchHHhcCCce---eEeccCCCcCCCCCceEEEEEEe
Confidence 998 6889999999999999998875 56887755443 45677777764
No 203
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=99.16 E-value=1.1e-10 Score=109.87 Aligned_cols=82 Identities=17% Similarity=0.430 Sum_probs=68.4
Q ss_pred EEEEEeecCC------CCCcEEEEEECCe------EEeeecccCCCCCeEeeEEEEEEec----CCCCeEEEEEEecCCC
Q 001703 8 VYVLQGQDLL------AKDSYVKVQIGKH------KSKSRILKNNSNPVWNEEFVFRVHN----IDDEELVVSVFQHNDD 71 (1024)
Q Consensus 8 V~V~~Ar~L~------~~DPyv~v~l~~~------~~rT~v~~~t~nP~WnE~f~f~v~~----~~~~~L~v~V~d~d~~ 71 (1024)
+-.++|++|+ .+||||++++.++ .++|+++++++||+|| +|.|.+.. .....|.|+|||++
T Consensus 4 ~~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d-- 80 (110)
T cd04047 4 ELQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYD-- 80 (110)
T ss_pred EEEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeC--
Confidence 4467899998 6899999998543 4899999999999999 78777532 22689999999999
Q ss_pred CCCCCCCCCeeEEEEEeCcccccc
Q 001703 72 SGLFGSSGELMGRVRVPVSSIAAE 95 (1024)
Q Consensus 72 ~~f~~~~d~~lG~~~i~L~~l~~~ 95 (1024)
. .++|++||++.+++.++...
T Consensus 81 -~--~~~d~~iG~~~~~l~~l~~~ 101 (110)
T cd04047 81 -S--SGKHDLIGEFETTLDELLKS 101 (110)
T ss_pred -C--CCCCcEEEEEEEEHHHHhcC
Confidence 3 57899999999999999853
No 204
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=99.14 E-value=1.7e-10 Score=102.73 Aligned_cols=76 Identities=37% Similarity=0.630 Sum_probs=67.7
Q ss_pred EEEEEEEeecCC------CCCcEEEEEECC---eEEeeecccCCCCCeEeeEEEEEEecCCCCeEEEEEEecCCCCCCCC
Q 001703 6 LYVYVLQGQDLL------AKDSYVKVQIGK---HKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLFG 76 (1024)
Q Consensus 6 L~V~V~~Ar~L~------~~DPyv~v~l~~---~~~rT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~~~f~~ 76 (1024)
|+|+|++|+||+ .+||||++.+++ ...+|++++++.+|.|||+|.|.+.......|.|+|||.+ . .
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~---~--~ 75 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLDDPDLDSLSFEVWDKD---S--F 75 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEESHGCGTEEEEEEEEET---S--S
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeeccccceeeeeeeeeeecccccceEEEEEECC---C--C
Confidence 789999999999 679999999976 6699999999999999999999987666666999999999 3 4
Q ss_pred CCCCeeEEEE
Q 001703 77 SSGELMGRVR 86 (1024)
Q Consensus 77 ~~d~~lG~~~ 86 (1024)
+++++||++.
T Consensus 76 ~~~~~iG~~~ 85 (85)
T PF00168_consen 76 GKDELIGEVK 85 (85)
T ss_dssp SSEEEEEEEE
T ss_pred CCCCEEEEEC
Confidence 5799999974
No 205
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=99.14 E-value=2.4e-10 Score=104.76 Aligned_cols=94 Identities=28% Similarity=0.491 Sum_probs=82.0
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEECCE---EEeeecccCCCCCeEeEEEEEEeecCCCCeEEEEEEecCCCCCCCc
Q 001703 538 LTVALVEGVNLASSEMTGLSDPYVVFTCNGK---TRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQAT 614 (1024)
Q Consensus 538 L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~---~~kT~~~~~t~nP~WnE~f~f~~~~~~~~~L~v~V~D~d~~~~~dd 614 (1024)
|.|+|++|++|......+..+|||++++.+. ..+|+++.++.||.|||+|.|.+.......|.|+|||.+. .+.+.
T Consensus 2 l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~-~~~~~ 80 (101)
T smart00239 2 LTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKDR-FGRDD 80 (101)
T ss_pred eEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecCC-ccCCc
Confidence 6899999999998876678999999999864 7999999999999999999999644447899999999997 57789
Q ss_pred cceEEEEEcccccCCCcc
Q 001703 615 SLGHAEINFLKHTSTELA 632 (1024)
Q Consensus 615 ~lG~~~i~l~~l~~~~~~ 632 (1024)
++|.+.+++.++..+...
T Consensus 81 ~~G~~~~~l~~~~~~~~~ 98 (101)
T smart00239 81 FIGQVTIPLSDLLLGGRH 98 (101)
T ss_pred eeEEEEEEHHHcccCccc
Confidence 999999999998776544
No 206
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.14 E-value=2.4e-10 Score=109.60 Aligned_cols=93 Identities=23% Similarity=0.269 Sum_probs=78.5
Q ss_pred EEEEEEEeeCCCCCCC--CCC--CCcEEEEEECC---EEEeeecccCCCC--CeEeEEEEEEeecC--------------
Q 001703 538 LTVALVEGVNLASSEM--TGL--SDPYVVFTCNG---KTRTSSVQLQTCD--PQWHDILEFDAMEE-------------- 594 (1024)
Q Consensus 538 L~V~vi~a~~L~~~d~--~g~--~DPyv~v~~~~---~~~kT~~~~~t~n--P~WnE~f~f~~~~~-------------- 594 (1024)
|+|.|.+|+|++..+. .|. +||||++.+.+ .+.+|.+..+++| |.||+.|.|++...
T Consensus 2 LRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~~ 81 (133)
T cd08374 2 LRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEHF 81 (133)
T ss_pred EEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeeccc
Confidence 7999999999665443 664 99999999964 5689999999999 99999999986431
Q ss_pred ---------CCCeEEEEEEecCCCCCCCccceEEEEEcccccCCCc
Q 001703 595 ---------PPSVLDVEVFDFDGPFDQATSLGHAEINFLKHTSTEL 631 (1024)
Q Consensus 595 ---------~~~~L~v~V~D~d~~~~~dd~lG~~~i~l~~l~~~~~ 631 (1024)
....|.++|||.|. +++||+||++.++|..+..+..
T Consensus 82 ~~~~~~e~~~~~~L~lqvwD~D~-~s~dd~iG~~~l~l~~l~~~~~ 126 (133)
T cd08374 82 WSLDETEYKIPPKLTLQVWDNDK-FSPDDFLGSLELDLSILPRPAK 126 (133)
T ss_pred cccCcceEecCcEEEEEEEECcc-cCCCCcceEEEEEhhhcccccc
Confidence 13589999999999 8999999999999998876543
No 207
>PLN02952 phosphoinositide phospholipase C
Probab=99.09 E-value=7.2e-10 Score=130.42 Aligned_cols=117 Identities=15% Similarity=0.201 Sum_probs=93.4
Q ss_pred eEEEEEEEEeeCCCCC------CCCCCCCcEEEEEECC-----EEEeeecccCCCCCeEeEEEEEEeecCCCCeEEEEEE
Q 001703 536 WVLTVALVEGVNLASS------EMTGLSDPYVVFTCNG-----KTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVF 604 (1024)
Q Consensus 536 ~~L~V~vi~a~~L~~~------d~~g~~DPyv~v~~~~-----~~~kT~~~~~t~nP~WnE~f~f~~~~~~~~~L~v~V~ 604 (1024)
..|+|+|+.|.+++.. +.....||||+|.+-| .+.+|+++.++.||+|||+|.|.+..+.-..|.|+||
T Consensus 470 ~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELAllrf~V~ 549 (599)
T PLN02952 470 KTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELALLRIEVR 549 (599)
T ss_pred ceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCccEEEEEEE
Confidence 4799999999987532 1123459999999953 5679999999999999999999987666678999999
Q ss_pred ecCCCCCCCccceEEEEEcccccCCCccceEEEccccccc-cccceeEEEEEE
Q 001703 605 DFDGPFDQATSLGHAEINFLKHTSTELADMWVSLEGKLAQ-SAQSKVHLRIFL 656 (1024)
Q Consensus 605 D~d~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~-~~~g~l~l~~~~ 656 (1024)
|+|. .+.|+|+|++.|||..+..|.. |++|..+.+. .....|.+++.+
T Consensus 550 D~D~-~~~ddfiGq~~lPv~~Lr~GyR---~VpL~~~~G~~l~~a~Llv~f~~ 598 (599)
T PLN02952 550 EYDM-SEKDDFGGQTCLPVSELRPGIR---SVPLHDKKGEKLKNVRLLMRFIF 598 (599)
T ss_pred ecCC-CCCCCeEEEEEcchhHhcCCce---eEeCcCCCCCCCCCEEEEEEEEe
Confidence 9998 7889999999999999998874 8999764443 344556666543
No 208
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.08 E-value=4.9e-11 Score=125.84 Aligned_cols=171 Identities=19% Similarity=0.265 Sum_probs=137.0
Q ss_pred CcEEEEEEEEeecCC------CCCcEEEEEECC-----eEEeeecccCCCCCeEeeEEEEE-Ee--cCCCCeEEEEEEec
Q 001703 3 STRLYVYVLQGQDLL------AKDSYVKVQIGK-----HKSKSRILKNNSNPVWNEEFVFR-VH--NIDDEELVVSVFQH 68 (1024)
Q Consensus 3 ~~~L~V~V~~Ar~L~------~~DPyv~v~l~~-----~~~rT~v~~~t~nP~WnE~f~f~-v~--~~~~~~L~v~V~d~ 68 (1024)
+.++.+++..|++|. ..|||+...++. .+.+|++..+++||.|+|+..+. +. +.....+++.|+|.
T Consensus 92 ~~~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~n~lN~~w~etev~~~i~~~~~~~K~~Rk~vcdn 171 (362)
T KOG1013|consen 92 SRMLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTRNTLNPEWNETEVYEGITDDDTHLKVLRKVVCDN 171 (362)
T ss_pred hhhcceeechhcccchhhhhhhcchHHhhhcccchhhhhhhhHHhhccCcCcceeccceecccccchhhhhhhheeeccC
Confidence 567899999999988 689999999964 34889999999999999999888 32 34456788889998
Q ss_pred CCCCCCCCCCCCeeEEEEEeCccccccCCCCCCCEEEEeecC--CCCCCCCccccEEEEEEEEEecCCeeeEEEEEeecc
Q 001703 69 NDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETP--KTRKFTNKDCGKILLTISLNGKGHNLSSNRLLYLHS 146 (1024)
Q Consensus 69 d~~~~f~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~--~~~~~~~~~~G~I~lsl~~~~~~~~l~v~v~~~~~~ 146 (1024)
+ + +...+++|+..+++..+...... ....|+.-.-+ +........+|+|.+++.|......+.+.+++| .
T Consensus 172 ~---~--~~~~~sqGq~r~~lkKl~p~q~k-~f~~cl~~~lp~~rad~~~~E~rg~i~isl~~~s~~~~l~vt~iRc--~ 243 (362)
T KOG1013|consen 172 D---K--KTHNESQGQSRVSLKKLKPLQRK-SFNICLEKSLPSERADRDEDEERGAILISLAYSSTTPGLIVTIIRC--S 243 (362)
T ss_pred c---c--cccccCcccchhhhhccChhhcc-hhhhhhhccCCcccccccchhhccceeeeeccCcCCCceEEEEEEe--e
Confidence 8 3 56889999999999988876431 12334433222 111222467999999999999999999999998 8
Q ss_pred CCCCCCCCCCCCCeEEEEecCCCCCCccccccccc
Q 001703 147 NVSSNESKELEDPCVLSHDVSCSKAPCLDVTEGNH 181 (1024)
Q Consensus 147 ~L~~~~~~g~sdp~vkv~l~~~~~~~~~~~~~~~~ 181 (1024)
.|..+|.+|.+||||+.++.++.....+++++..+
T Consensus 244 ~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K 278 (362)
T KOG1013|consen 244 HLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKK 278 (362)
T ss_pred eeeccccCCCCCccceeecCCCcchhhcccCcchh
Confidence 89999999999999999999988888888887775
No 209
>PLN02270 phospholipase D alpha
Probab=99.02 E-value=1.8e-09 Score=129.21 Aligned_cols=122 Identities=19% Similarity=0.187 Sum_probs=102.0
Q ss_pred CeEEEEEEEEeeCCCCCC------------------CCCCCCcEEEEEECCE-EEeeecccCC-CCCeEeEEEEEEeecC
Q 001703 535 GWVLTVALVEGVNLASSE------------------MTGLSDPYVVFTCNGK-TRTSSVQLQT-CDPQWHDILEFDAMEE 594 (1024)
Q Consensus 535 ~~~L~V~vi~a~~L~~~d------------------~~g~~DPyv~v~~~~~-~~kT~~~~~t-~nP~WnE~f~f~~~~~ 594 (1024)
.|.|.|+|.+|++|+.++ ..+++||||.|.+++. .-+|+++.+. .||+|||.|.++ ..+
T Consensus 7 hg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i~-~ah 85 (808)
T PLN02270 7 HGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHIY-CAH 85 (808)
T ss_pred ecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEEEEEeecCCCCCCCccccceEEe-ecc
Confidence 478999999999998632 1357899999999865 5599999884 699999999999 677
Q ss_pred CCCeEEEEEEecCCCCCCCccceEEEEEcccccCCCccceEEEcccccccccc--ceeEEEEEEecc
Q 001703 595 PPSVLDVEVFDFDGPFDQATSLGHAEINFLKHTSTELADMWVSLEGKLAQSAQ--SKVHLRIFLENN 659 (1024)
Q Consensus 595 ~~~~L~v~V~D~d~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~--g~l~l~~~~~~~ 659 (1024)
....+.|+|.|.|. ++. .+||++.||+.++..+...+.|+++.+..+++.. .+||+++.+...
T Consensus 86 ~~~~v~f~vkd~~~-~g~-~~ig~~~~p~~~~~~g~~i~~~~~~~~~~~~p~~~~~~~~~~~~f~~~ 150 (808)
T PLN02270 86 MASNIIFTVKDDNP-IGA-TLIGRAYIPVEEILDGEEVDRWVEILDNDKNPIHGGSKIHVKLQYFEV 150 (808)
T ss_pred CcceEEEEEecCCc-cCc-eEEEEEEEEHHHhcCCCccccEEeccCCCCCcCCCCCEEEEEEEEEEc
Confidence 78999999999997 665 5999999999999999999999999886666543 488888876543
No 210
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=99.02 E-value=5.3e-11 Score=135.34 Aligned_cols=129 Identities=22% Similarity=0.511 Sum_probs=104.8
Q ss_pred cCCCeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEC--------------------------CE-----EEeeecccCCCC
Q 001703 532 QGDGWVLTVALVEGVNLASSEMTGLSDPYVVFTCN--------------------------GK-----TRTSSVQLQTCD 580 (1024)
Q Consensus 532 ~~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~--------------------------~~-----~~kT~~~~~t~n 580 (1024)
..+...+.|.+.+|+||.++|.+|.||||+...+- |. .+-|.++++|+|
T Consensus 110 k~P~~~l~is~~~ak~l~akd~ngfSdP~~m~g~~p~~~~~~~pra~~eqrdgl~~~~~~~GpiPAKlIkatsvk~~TLn 189 (1103)
T KOG1328|consen 110 KPPSVLLNISLLEAKDLIAKDVNGFSDPFAMMGVVPGTRKENSPRALHEQRDGLMHRFQDTGPIPAKLIKATSVKKKTLN 189 (1103)
T ss_pred CCCcHHHHHHHHHhcCccccCCCCCCChhhhhccccccccccChhhhhhhhhhhhhccccCCCCcHHHhhhcccccccCC
Confidence 34556788899999999999999999999998761 00 135788999999
Q ss_pred CeEeEEEEEEeecCCCCeEEEEEEecCCC---------------C-----------------C---CCccceEEEEEccc
Q 001703 581 PQWHDILEFDAMEEPPSVLDVEVFDFDGP---------------F-----------------D---QATSLGHAEINFLK 625 (1024)
Q Consensus 581 P~WnE~f~f~~~~~~~~~L~v~V~D~d~~---------------~-----------------~---~dd~lG~~~i~l~~ 625 (1024)
|+|+|.|.|.+-+-....+++.|||+|-- + + .|||+|.+.|||.+
T Consensus 190 PkW~EkF~F~IeDv~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDDFLGciNipl~E 269 (1103)
T KOG1328|consen 190 PKWSEKFQFTIEDVQTDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDDFLGCINIPLAE 269 (1103)
T ss_pred cchhhheeeehhccccceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCccccccccccccchhc
Confidence 99999999997677778999999999830 0 2 38999999999999
Q ss_pred ccCCCccceEEEccccccc-cccceeEEEEEEeccCC
Q 001703 626 HTSTELADMWVSLEGKLAQ-SAQSKVHLRIFLENNNG 661 (1024)
Q Consensus 626 l~~~~~~~~w~~L~~~~~~-~~~g~l~l~~~~~~~~~ 661 (1024)
+...+ .+.||.|++.+.+ ..+|.++|.+++....+
T Consensus 270 iP~~G-ld~WFkLepRS~~S~VqG~~~LklwLsT~e~ 305 (1103)
T KOG1328|consen 270 IPPDG-LDQWFKLEPRSDKSKVQGQVKLKLWLSTKEE 305 (1103)
T ss_pred CCcch-HHHHhccCcccccccccceEEEEEEEeeecc
Confidence 97755 6889999996544 56999999999875543
No 211
>PLN02230 phosphoinositide phospholipase C 4
Probab=99.01 E-value=1.7e-09 Score=127.09 Aligned_cols=117 Identities=16% Similarity=0.179 Sum_probs=94.9
Q ss_pred eEEEEEEEEeeCCCCC------CCCCCCCcEEEEEECC-----EEEeeecccCCCCCeEeEEEEEEeecCCCCeEEEEEE
Q 001703 536 WVLTVALVEGVNLASS------EMTGLSDPYVVFTCNG-----KTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVF 604 (1024)
Q Consensus 536 ~~L~V~vi~a~~L~~~------d~~g~~DPyv~v~~~~-----~~~kT~~~~~t~nP~WnE~f~f~~~~~~~~~L~v~V~ 604 (1024)
..|.|+|+.|.+++.. +.....||||+|.+-| .+.+|++..++.||+|||+|+|.+..+.-..|+|+|+
T Consensus 469 ~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPELAllRf~V~ 548 (598)
T PLN02230 469 KTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPELALLRVEVH 548 (598)
T ss_pred cEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCceeEEEEEEE
Confidence 4799999999987521 2234579999999953 3568899999999999999999987777789999999
Q ss_pred ecCCCCCCCccceEEEEEcccccCCCccceEEEcccccccc-ccceeEEEEEE
Q 001703 605 DFDGPFDQATSLGHAEINFLKHTSTELADMWVSLEGKLAQS-AQSKVHLRIFL 656 (1024)
Q Consensus 605 D~d~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~-~~g~l~l~~~~ 656 (1024)
|+|. .+.|+|+|++.||+..|..|.. .++|..+.+.. ...+|.+++.+
T Consensus 549 d~d~-~~~ddfiGQ~~lPv~~Lr~GyR---~V~L~~~~G~~l~~~~Ll~~f~~ 597 (598)
T PLN02230 549 EHDI-NEKDDFGGQTCLPVSEIRQGIH---AVPLFNRKGVKYSSTRLLMRFEF 597 (598)
T ss_pred ECCC-CCCCCEEEEEEcchHHhhCccc---eEeccCCCcCCCCCCeeEEEEEe
Confidence 9998 6899999999999999999876 45887755443 45577777754
No 212
>PLN02223 phosphoinositide phospholipase C
Probab=98.96 E-value=6.3e-09 Score=119.93 Aligned_cols=112 Identities=21% Similarity=0.337 Sum_probs=88.4
Q ss_pred cEEEEEEEEeecCC-----------CCCcEEEEEECC-----eEEeeecccCCCCCeEeeEEEEEEecCCCCeEEEEEEe
Q 001703 4 TRLYVYVLQGQDLL-----------AKDSYVKVQIGK-----HKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQ 67 (1024)
Q Consensus 4 ~~L~V~V~~Ar~L~-----------~~DPyv~v~l~~-----~~~rT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d 67 (1024)
..|.|+|+.|.+++ ..||||+|.+.+ .+++|++..|+.||+|||+|.|.+..+.-..|+|+|+|
T Consensus 409 ~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PELAlLrf~V~D 488 (537)
T PLN02223 409 KILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDLALISFEVYD 488 (537)
T ss_pred eEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCceEEEEEEEe
Confidence 57999999999863 368999999953 34788888889999999999999877778889999999
Q ss_pred cCCCCCCCCCCCCeeEEEEEeCccccccCCCCCCCEEEEeecCCCCCCCCccccEEEEEEEE
Q 001703 68 HNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTISL 129 (1024)
Q Consensus 68 ~d~~~~f~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~ 129 (1024)
+| ..++++|+|+..+|+..+..+ -.+++|... .+. .-..-.|++.+.|
T Consensus 489 ~D-----~~~~ddfiGQ~~LPv~~Lr~G------yR~VpL~~~-~g~--~l~~~~Ll~~f~~ 536 (537)
T PLN02223 489 YE-----VSTADAFCGQTCLPVSELIEG------IRAVPLYDE-RGK--ACSSTMLLTRFKW 536 (537)
T ss_pred cC-----CCCCCcEEEEEecchHHhcCC------ceeEeccCC-CcC--CCCCceEEEEEEe
Confidence 99 356899999999999999974 457888733 322 2233466666554
No 213
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=98.95 E-value=2.7e-09 Score=124.83 Aligned_cols=117 Identities=17% Similarity=0.283 Sum_probs=95.7
Q ss_pred EEEEEEEEeeCCCCCCC----CCCCCcEEEEEECCE-----EEeee-cccCCCCCeEeEEEEEEeecCCCCeEEEEEEec
Q 001703 537 VLTVALVEGVNLASSEM----TGLSDPYVVFTCNGK-----TRTSS-VQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDF 606 (1024)
Q Consensus 537 ~L~V~vi~a~~L~~~d~----~g~~DPyv~v~~~~~-----~~kT~-~~~~t~nP~WnE~f~f~~~~~~~~~L~v~V~D~ 606 (1024)
+|.|+|+.|.++++.-. ...+||||.|++.|. ..+|+ +..++.||.|+|+|+|.+..+.-..|+|.|+|+
T Consensus 617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d~ 696 (746)
T KOG0169|consen 617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHDY 696 (746)
T ss_pred eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEec
Confidence 79999999997665432 245899999999653 56899 578899999999999998888888999999999
Q ss_pred CCCCCCCccceEEEEEcccccCCCccceEEEccccccc-cccceeEEEEEEe
Q 001703 607 DGPFDQATSLGHAEINFLKHTSTELADMWVSLEGKLAQ-SAQSKVHLRIFLE 657 (1024)
Q Consensus 607 d~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~-~~~g~l~l~~~~~ 657 (1024)
|. .++|||+|+.+||+..|..|..+. +|.+..|. -...+|.+++.+.
T Consensus 697 d~-~~~ddF~GQ~tlP~~~L~~GyRhV---pL~~~~G~~~~~asLfv~i~~~ 744 (746)
T KOG0169|consen 697 DY-IGKDDFIGQTTLPVSELRQGYRHV---PLLSREGEALSSASLFVRIAIV 744 (746)
T ss_pred CC-CCcccccceeeccHHHhhCceeee---eecCCCCccccceeEEEEEEEe
Confidence 99 689999999999999999988764 77664333 3456788877664
No 214
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=98.94 E-value=4.2e-09 Score=101.11 Aligned_cols=86 Identities=23% Similarity=0.332 Sum_probs=74.0
Q ss_pred EEEEEEEEeecCC----------CCCcEEEEEECC---eEEeeecccCCCC--CeEeeEEEEEEec--------------
Q 001703 5 RLYVYVLQGQDLL----------AKDSYVKVQIGK---HKSKSRILKNNSN--PVWNEEFVFRVHN-------------- 55 (1024)
Q Consensus 5 ~L~V~V~~Ar~L~----------~~DPyv~v~l~~---~~~rT~v~~~t~n--P~WnE~f~f~v~~-------------- 55 (1024)
.|+|.|.+|++++ .+||||++.+.+ .+++|.+..+++| |.||+.|.|.+..
T Consensus 1 eLRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~ 80 (133)
T cd08374 1 ELRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEH 80 (133)
T ss_pred CEEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeecc
Confidence 3899999999965 289999999964 4699999999999 9999999999652
Q ss_pred ---------CCCCeEEEEEEecCCCCCCCCCCCCeeEEEEEeCcccccc
Q 001703 56 ---------IDDEELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAE 95 (1024)
Q Consensus 56 ---------~~~~~L~v~V~d~d~~~~f~~~~d~~lG~~~i~L~~l~~~ 95 (1024)
.....|.++|||.| + .++|++||++.++|..+...
T Consensus 81 ~~~~~~~e~~~~~~L~lqvwD~D---~--~s~dd~iG~~~l~l~~l~~~ 124 (133)
T cd08374 81 FWSLDETEYKIPPKLTLQVWDND---K--FSPDDFLGSLELDLSILPRP 124 (133)
T ss_pred ccccCcceEecCcEEEEEEEECc---c--cCCCCcceEEEEEhhhcccc
Confidence 23578999999999 4 57899999999999988764
No 215
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=98.94 E-value=4.5e-09 Score=95.91 Aligned_cols=94 Identities=35% Similarity=0.656 Sum_probs=80.3
Q ss_pred EEEEEEEeecCC------CCCcEEEEEECC-eEEeeecccCCCCCeEeeEEEEEEecCCCCeEEEEEEecCCCCCCCCCC
Q 001703 6 LYVYVLQGQDLL------AKDSYVKVQIGK-HKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLFGSS 78 (1024)
Q Consensus 6 L~V~V~~Ar~L~------~~DPyv~v~l~~-~~~rT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~~~f~~~~ 78 (1024)
|.|+|++|++|. .+||||.+.+.+ ...+|+++.++.||.|||.|.|.+.......|.|+||+.+ . .+.
T Consensus 1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~---~--~~~ 75 (102)
T cd00030 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKD---R--FSK 75 (102)
T ss_pred CEEEEEeeeCCCCcCCCCCCCcEEEEEeccCceEecceeCCCCCCcccceEEEEccCCCCCEEEEEEEecC---C--CCC
Confidence 579999999997 689999999987 7899999999999999999999985447889999999999 3 356
Q ss_pred CCeeEEEEEeCcccc-ccCCCCCCCEEEEe
Q 001703 79 GELMGRVRVPVSSIA-AEDNHMLPPTWFSL 107 (1024)
Q Consensus 79 d~~lG~~~i~L~~l~-~~~~~~~~~~W~~L 107 (1024)
+.+||++.+++.++. .. .....|++|
T Consensus 76 ~~~ig~~~~~l~~l~~~~---~~~~~~~~l 102 (102)
T cd00030 76 DDFLGEVEIPLSELLDSG---KEGELWLPL 102 (102)
T ss_pred CceeEEEEEeHHHhhhcC---CcCcceecC
Confidence 899999999999988 32 336678765
No 216
>PLN02222 phosphoinositide phospholipase C 2
Probab=98.91 E-value=8.6e-09 Score=121.08 Aligned_cols=117 Identities=14% Similarity=0.184 Sum_probs=93.1
Q ss_pred eEEEEEEEEeeCCC----C--CCCCCCCCcEEEEEEC-----CEEEeeecccCCCCCeEeEEEEEEeecCCCCeEEEEEE
Q 001703 536 WVLTVALVEGVNLA----S--SEMTGLSDPYVVFTCN-----GKTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVF 604 (1024)
Q Consensus 536 ~~L~V~vi~a~~L~----~--~d~~g~~DPyv~v~~~-----~~~~kT~~~~~t~nP~WnE~f~f~~~~~~~~~L~v~V~ 604 (1024)
..|+|+|+.|.+++ . .+.....||||+|.+. ..+.+|+++.++.||+|||+|+|.+..+.-..|+|.|+
T Consensus 452 ~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLAllRf~V~ 531 (581)
T PLN02222 452 TTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELALLRLEVH 531 (581)
T ss_pred ceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCceeEEEEEEE
Confidence 47999999998853 1 1123457999999995 34679999999999999999999987766789999999
Q ss_pred ecCCCCCCCccceEEEEEcccccCCCccceEEEcccccccc-ccceeEEEEEE
Q 001703 605 DFDGPFDQATSLGHAEINFLKHTSTELADMWVSLEGKLAQS-AQSKVHLRIFL 656 (1024)
Q Consensus 605 D~d~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~-~~g~l~l~~~~ 656 (1024)
|+|. .+.|+|+|++.||+..|..|.. .++|..+.+.. ...+|.+++.+
T Consensus 532 d~D~-~~~ddfigq~~lPv~~Lr~GyR---~V~L~~~~g~~l~~a~Lfv~~~~ 580 (581)
T PLN02222 532 EYDM-SEKDDFGGQTCLPVWELSQGIR---AFPLHSRKGEKYKSVKLLVKVEF 580 (581)
T ss_pred ECCC-CCCCcEEEEEEcchhhhhCccc---eEEccCCCcCCCCCeeEEEEEEe
Confidence 9998 6889999999999999998876 45887754443 34567776654
No 217
>PLN02228 Phosphoinositide phospholipase C
Probab=98.90 E-value=1e-08 Score=120.13 Aligned_cols=120 Identities=17% Similarity=0.186 Sum_probs=96.4
Q ss_pred eEEEEEEEEeeCCCC---CC---CCCCCCcEEEEEECC-----EEEeeecccCCCCCeE-eEEEEEEeecCCCCeEEEEE
Q 001703 536 WVLTVALVEGVNLAS---SE---MTGLSDPYVVFTCNG-----KTRTSSVQLQTCDPQW-HDILEFDAMEEPPSVLDVEV 603 (1024)
Q Consensus 536 ~~L~V~vi~a~~L~~---~d---~~g~~DPyv~v~~~~-----~~~kT~~~~~t~nP~W-nE~f~f~~~~~~~~~L~v~V 603 (1024)
..|+|+|+.|.+|+. .+ .....||||+|.+.| .+++|+++.++.||+| ||+|+|.+..+.-..|+|.|
T Consensus 431 ~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA~lRf~V 510 (567)
T PLN02228 431 TTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELALLWFKV 510 (567)
T ss_pred ceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCceeEEEEEE
Confidence 479999999998731 11 123479999999843 4679999999999999 99999998776677999999
Q ss_pred EecCCCCCCCccceEEEEEcccccCCCccceEEEcccccccc-ccceeEEEEEEecc
Q 001703 604 FDFDGPFDQATSLGHAEINFLKHTSTELADMWVSLEGKLAQS-AQSKVHLRIFLENN 659 (1024)
Q Consensus 604 ~D~d~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~-~~g~l~l~~~~~~~ 659 (1024)
+|+|. .+.|+|+|++.|||..|..|.. .++|.++.+.. ...+|.+++.+...
T Consensus 511 ~D~d~-~~~d~figq~~lPv~~Lr~GYR---~VpL~~~~G~~l~~atLfv~~~~~~~ 563 (567)
T PLN02228 511 QDYDN-DTQNDFAGQTCLPLPELKSGVR---AVRLHDRAGKAYKNTRLLVSFALDPP 563 (567)
T ss_pred EeCCC-CCCCCEEEEEEcchhHhhCCee---EEEccCCCCCCCCCeEEEEEEEEcCc
Confidence 99998 6899999999999999988875 46887754444 45678888887643
No 218
>PLN02952 phosphoinositide phospholipase C
Probab=98.87 E-value=1.8e-08 Score=118.81 Aligned_cols=96 Identities=27% Similarity=0.369 Sum_probs=81.4
Q ss_pred CcEEEEEEEEeecCC------------CCCcEEEEEECC-----eEEeeecccCCCCCeEeeEEEEEEecCCCCeEEEEE
Q 001703 3 STRLYVYVLQGQDLL------------AKDSYVKVQIGK-----HKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSV 65 (1024)
Q Consensus 3 ~~~L~V~V~~Ar~L~------------~~DPyv~v~l~~-----~~~rT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V 65 (1024)
...|.|+|+.|.+|+ ..||||+|.+.+ .+.+|+++.++.||+|||+|.|.+..+.-..|+|.|
T Consensus 469 ~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELAllrf~V 548 (599)
T PLN02952 469 KKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELALLRIEV 548 (599)
T ss_pred cceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCccEEEEEE
Confidence 357999999998874 248999999943 468999999999999999999998766667899999
Q ss_pred EecCCCCCCCCCCCCeeEEEEEeCccccccCCCCCCCEEEEeec
Q 001703 66 FQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLET 109 (1024)
Q Consensus 66 ~d~d~~~~f~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~ 109 (1024)
+|+| . .+.++|+|+..+||..+..+ ..|++|.+
T Consensus 549 ~D~D---~--~~~ddfiGq~~lPv~~Lr~G------yR~VpL~~ 581 (599)
T PLN02952 549 REYD---M--SEKDDFGGQTCLPVSELRPG------IRSVPLHD 581 (599)
T ss_pred EecC---C--CCCCCeEEEEEcchhHhcCC------ceeEeCcC
Confidence 9999 3 46899999999999999974 45999973
No 219
>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=98.87 E-value=4.1e-09 Score=117.08 Aligned_cols=131 Identities=16% Similarity=0.340 Sum_probs=108.2
Q ss_pred eEEEEEEEEeeCCCCCCC-CCCCCcEEEEEECCEEEeeecccCCCCCeEe-EEEEEEeecC--CCCeEEEEEEecCCCCC
Q 001703 536 WVLTVALVEGVNLASSEM-TGLSDPYVVFTCNGKTRTSSVQLQTCDPQWH-DILEFDAMEE--PPSVLDVEVFDFDGPFD 611 (1024)
Q Consensus 536 ~~L~V~vi~a~~L~~~d~-~g~~DPyv~v~~~~~~~kT~~~~~t~nP~Wn-E~f~f~~~~~--~~~~L~v~V~D~d~~~~ 611 (1024)
|.|.|++..|++||-+|. ....|.||.|++++..+||.+..+++||.|| +.|.|++.+. ....|.|++.|+|. ++
T Consensus 3 gkl~vki~a~r~lpvmdkasd~tdafveik~~n~t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dt-ys 81 (1169)
T KOG1031|consen 3 GKLGVKIKAARHLPVMDKASDLTDAFVEIKFANTTFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDT-YS 81 (1169)
T ss_pred CcceeEEEeccCCcccccccccchheeEEEecccceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEecccc-cc
Confidence 678999999999999986 4568999999999999999999999999999 7899996432 34589999999999 99
Q ss_pred CCccceEEEEEcccccCC----------CccceEEEccccccccccceeEEEEEEeccCCchhhhhh
Q 001703 612 QATSLGHAEINFLKHTST----------ELADMWVSLEGKLAQSAQSKVHLRIFLENNNGVETIKEY 668 (1024)
Q Consensus 612 ~dd~lG~~~i~l~~l~~~----------~~~~~w~~L~~~~~~~~~g~l~l~~~~~~~~~~~~~~~~ 668 (1024)
.+|-||.+.|++..+... .....|+|+-+.-. ...|+|.+.+.+...++....++.
T Consensus 82 andaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdtih-girgeinvivkvdlfndlnkf~qs 147 (1169)
T KOG1031|consen 82 ANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTIH-GIRGEINVIVKVDLFNDLNKFPQS 147 (1169)
T ss_pred cccccceeeeccChHHHHhHHhhhcCCceEEeeeeecceecc-cccceeEEEEEEeehhhhhhcccc
Confidence 999999999999886432 34467999976321 247899999988777776665553
No 220
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=98.85 E-value=1.3e-08 Score=93.08 Aligned_cols=86 Identities=33% Similarity=0.606 Sum_probs=75.0
Q ss_pred EEEEEEEEeecCC------CCCcEEEEEECCe---EEeeecccCCCCCeEeeEEEEEEecCCCCeEEEEEEecCCCCCCC
Q 001703 5 RLYVYVLQGQDLL------AKDSYVKVQIGKH---KSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLF 75 (1024)
Q Consensus 5 ~L~V~V~~Ar~L~------~~DPyv~v~l~~~---~~rT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~~~f~ 75 (1024)
.|.|+|++|++|. ..+|||++++... ..+|+++.++.||.|||+|.|.+.......|.|+|||.+ .
T Consensus 1 ~l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~---~-- 75 (101)
T smart00239 1 TLTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKD---R-- 75 (101)
T ss_pred CeEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecC---C--
Confidence 3789999999998 4899999999875 799999999999999999999986444899999999998 2
Q ss_pred CCCCCeeEEEEEeCcccccc
Q 001703 76 GSSGELMGRVRVPVSSIAAE 95 (1024)
Q Consensus 76 ~~~d~~lG~~~i~L~~l~~~ 95 (1024)
.+.+.++|.+.+++.++..+
T Consensus 76 ~~~~~~~G~~~~~l~~~~~~ 95 (101)
T smart00239 76 FGRDDFIGQVTIPLSDLLLG 95 (101)
T ss_pred ccCCceeEEEEEEHHHcccC
Confidence 45689999999999888764
No 221
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=98.84 E-value=1.1e-08 Score=91.83 Aligned_cols=84 Identities=17% Similarity=0.311 Sum_probs=72.1
Q ss_pred EEEEEEEeeCCCCCC---CCCCCCcEEEEEECCE-EEeeecccCCCCCeEeEEEEEEeecCCCCeEEEEEEecCCCCCCC
Q 001703 538 LTVALVEGVNLASSE---MTGLSDPYVVFTCNGK-TRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQA 613 (1024)
Q Consensus 538 L~V~vi~a~~L~~~d---~~g~~DPyv~v~~~~~-~~kT~~~~~t~nP~WnE~f~f~~~~~~~~~L~v~V~D~d~~~~~d 613 (1024)
|.|+|..++|+...+ ..+.+||||.|++++. +.||++ +.||.|||+|.|++ +....+.+.|||+.. +..
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~~kaRTr~---srnd~WnE~F~i~V--dk~nEiel~VyDk~~--~~~ 73 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRPETYVSIKVEDVERARTKP---SRNDRWNEDFEIPV--EKNNEEEVIVYDKGG--DQP 73 (109)
T ss_pred CEEEEEEEecCccccchhhccCCCcEEEEEECCEEEEeccC---CCCCcccceEEEEe--cCCcEEEEEEEeCCC--Cee
Confidence 579999999999887 5788999999999976 778887 48999999999996 457899999999876 566
Q ss_pred ccceEEEEEcccccC
Q 001703 614 TSLGHAEINFLKHTS 628 (1024)
Q Consensus 614 d~lG~~~i~l~~l~~ 628 (1024)
-.||-.-+.++++..
T Consensus 74 ~Pi~llW~~~sdi~E 88 (109)
T cd08689 74 VPVGLLWLRLSDIAE 88 (109)
T ss_pred cceeeehhhHHHHHH
Confidence 788999999888653
No 222
>PLN02270 phospholipase D alpha
Probab=98.82 E-value=2.5e-08 Score=119.58 Aligned_cols=119 Identities=18% Similarity=0.327 Sum_probs=97.7
Q ss_pred CcEEEEEEEEeecCC------------------------CCCcEEEEEECCeE-EeeecccCC-CCCeEeeEEEEEEecC
Q 001703 3 STRLYVYVLQGQDLL------------------------AKDSYVKVQIGKHK-SKSRILKNN-SNPVWNEEFVFRVHNI 56 (1024)
Q Consensus 3 ~~~L~V~V~~Ar~L~------------------------~~DPyv~v~l~~~~-~rT~v~~~t-~nP~WnE~f~f~v~~~ 56 (1024)
++.|.|+|++|++|+ .+||||.|.+++.+ .||+++.+. .||.|||.|.+.+ ..
T Consensus 7 hg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i~~-ah 85 (808)
T PLN02270 7 HGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHIYC-AH 85 (808)
T ss_pred ecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEEEEEeecCCCCCCCccccceEEee-cc
Confidence 688999999999885 35999999998765 899999984 6999999999998 46
Q ss_pred CCCeEEEEEEecCCCCCCCCCCCCeeEEEEEeCccccccCCCCCCCEEEEeecCCCCCCCCccccEEEEEEEEEecC
Q 001703 57 DDEELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTISLNGKG 133 (1024)
Q Consensus 57 ~~~~L~v~V~d~d~~~~f~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~~~~~ 133 (1024)
.-..+.|.|.|.| . -...+||++.||+.++..++ ....|+++.... +++ .+...+|+++++|.+-.
T Consensus 86 ~~~~v~f~vkd~~---~---~g~~~ig~~~~p~~~~~~g~---~i~~~~~~~~~~-~~p-~~~~~~~~~~~~f~~~~ 151 (808)
T PLN02270 86 MASNIIFTVKDDN---P---IGATLIGRAYIPVEEILDGE---EVDRWVEILDND-KNP-IHGGSKIHVKLQYFEVT 151 (808)
T ss_pred CcceEEEEEecCC---c---cCceEEEEEEEEHHHhcCCC---ccccEEeccCCC-CCc-CCCCCEEEEEEEEEEcc
Confidence 6789999999999 2 35669999999999998753 478899998443 332 33456999999998753
No 223
>PLN02230 phosphoinositide phospholipase C 4
Probab=98.77 E-value=4.8e-08 Score=115.00 Aligned_cols=113 Identities=26% Similarity=0.389 Sum_probs=88.2
Q ss_pred CcEEEEEEEEeecCC------------CCCcEEEEEECC-----eEEeeecccCCCCCeEeeEEEEEEecCCCCeEEEEE
Q 001703 3 STRLYVYVLQGQDLL------------AKDSYVKVQIGK-----HKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSV 65 (1024)
Q Consensus 3 ~~~L~V~V~~Ar~L~------------~~DPyv~v~l~~-----~~~rT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V 65 (1024)
..+|.|+|+.+.+++ ..||||+|.+-+ .+.+|++..++.||+|||+|.|.+..+.-..|+|.|
T Consensus 468 ~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPELAllRf~V 547 (598)
T PLN02230 468 KKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPELALLRVEV 547 (598)
T ss_pred CcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCceeEEEEEE
Confidence 357999999999864 269999999942 347899999999999999999998777788999999
Q ss_pred EecCCCCCCCCCCCCeeEEEEEeCccccccCCCCCCCEEEEeecCCCCCCCCccccEEEEEEEE
Q 001703 66 FQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTISL 129 (1024)
Q Consensus 66 ~d~d~~~~f~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~ 129 (1024)
+|+| ..++++|+|+..+|+..|..+ -..++|.+..+ . .-..-.|++.+.+
T Consensus 548 ~d~d-----~~~~ddfiGQ~~lPv~~Lr~G------yR~V~L~~~~G-~--~l~~~~Ll~~f~~ 597 (598)
T PLN02230 548 HEHD-----INEKDDFGGQTCLPVSEIRQG------IHAVPLFNRKG-V--KYSSTRLLMRFEF 597 (598)
T ss_pred EECC-----CCCCCCEEEEEEcchHHhhCc------cceEeccCCCc-C--CCCCCeeEEEEEe
Confidence 9999 357899999999999999874 34678873332 2 1223456666554
No 224
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=98.76 E-value=2.7e-09 Score=121.83 Aligned_cols=94 Identities=24% Similarity=0.387 Sum_probs=83.2
Q ss_pred CCeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCE-------EEeeecccCCCCCeEeEEEEEEeecCCC----CeEEEE
Q 001703 534 DGWVLTVALVEGVNLASSEMTGLSDPYVVFTCNGK-------TRTSSVQLQTCDPQWHDILEFDAMEEPP----SVLDVE 602 (1024)
Q Consensus 534 ~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~-------~~kT~~~~~t~nP~WnE~f~f~~~~~~~----~~L~v~ 602 (1024)
..-.|.|.|+.|+++.+.|.+|.|||||+|.++-+ ..+|+++.+|+||+|+|.|+|.|..++. ..|.|+
T Consensus 945 n~q~L~veVlhA~diipLD~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~rtLnPVfDE~FeFsVp~e~c~te~Am~~FT 1024 (1103)
T KOG1328|consen 945 NAQTLVVEVLHAKDIIPLDSNGLSDPFVVIELIPKFRFPAVPVQKTKVVSRTLNPVFDETFEFSVPPEPCSTETAMLHFT 1024 (1103)
T ss_pred cccchhhhhhccccccccCCCCCCCCeEEEEeccccccccchhhhhhhhhccccchhhhheeeecCccccccccceEEEE
Confidence 34578899999999999999999999999999743 4599999999999999999999865543 479999
Q ss_pred EEecCCCCCCCccceEEEEEcccccC
Q 001703 603 VFDFDGPFDQATSLGHAEINFLKHTS 628 (1024)
Q Consensus 603 V~D~d~~~~~dd~lG~~~i~l~~l~~ 628 (1024)
|+|+|- ++.+||-|++.+.|..+..
T Consensus 1025 VMDHD~-L~sNDFaGEA~L~Lg~vpG 1049 (1103)
T KOG1328|consen 1025 VMDHDY-LRSNDFAGEAFLELGDVPG 1049 (1103)
T ss_pred eeccce-ecccccchHHHHhhCCCCC
Confidence 999998 8999999999999998753
No 225
>PLN02222 phosphoinositide phospholipase C 2
Probab=98.72 E-value=9.5e-08 Score=112.44 Aligned_cols=113 Identities=23% Similarity=0.375 Sum_probs=87.5
Q ss_pred CcEEEEEEEEeecCC------------CCCcEEEEEEC-----CeEEeeecccCCCCCeEeeEEEEEEecCCCCeEEEEE
Q 001703 3 STRLYVYVLQGQDLL------------AKDSYVKVQIG-----KHKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSV 65 (1024)
Q Consensus 3 ~~~L~V~V~~Ar~L~------------~~DPyv~v~l~-----~~~~rT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V 65 (1024)
...|+|+|+.|.+++ ..||||+|.+. ..+.+|+++.++.||+|||+|.|.+..+.-..|+|.|
T Consensus 451 ~~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLAllRf~V 530 (581)
T PLN02222 451 KTTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELALLRLEV 530 (581)
T ss_pred cceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCceeEEEEEE
Confidence 357999999998742 36899999994 2458999999999999999999998767778999999
Q ss_pred EecCCCCCCCCCCCCeeEEEEEeCccccccCCCCCCCEEEEeecCCCCCCCCccccEEEEEEEE
Q 001703 66 FQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTISL 129 (1024)
Q Consensus 66 ~d~d~~~~f~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~ 129 (1024)
+|+| ..+.++|+|+..+|+..|..+ -..++|.+..+ . .-..-.|.+.+.+
T Consensus 531 ~d~D-----~~~~ddfigq~~lPv~~Lr~G------yR~V~L~~~~g-~--~l~~a~Lfv~~~~ 580 (581)
T PLN02222 531 HEYD-----MSEKDDFGGQTCLPVWELSQG------IRAFPLHSRKG-E--KYKSVKLLVKVEF 580 (581)
T ss_pred EECC-----CCCCCcEEEEEEcchhhhhCc------cceEEccCCCc-C--CCCCeeEEEEEEe
Confidence 9998 356899999999999999874 34678873332 2 1223456665554
No 226
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=98.72 E-value=4.8e-08 Score=112.97 Aligned_cols=101 Identities=20% Similarity=0.259 Sum_probs=85.3
Q ss_pred CeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEC------CEEEeeecccCCCCCeEe-EEEEEEeecCCCCeEEEEEEecC
Q 001703 535 GWVLTVALVEGVNLASSEMTGLSDPYVVFTCN------GKTRTSSVQLQTCDPQWH-DILEFDAMEEPPSVLDVEVFDFD 607 (1024)
Q Consensus 535 ~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~------~~~~kT~~~~~t~nP~Wn-E~f~f~~~~~~~~~L~v~V~D~d 607 (1024)
...|.|+|+.|+.|+... .|.+-|||.|.+- +..++|.++.+++||+|| |.|+|++..+.-..|+|.|+|.|
T Consensus 1064 p~~lsv~vigaRHL~k~g-r~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~eeD 1142 (1267)
T KOG1264|consen 1064 PMTLSVKVLGARHLPKLG-RSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVVYEED 1142 (1267)
T ss_pred ceEEEEEEeeccccccCC-CCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEEeccc
Confidence 358999999999999644 5667799999984 334456668999999999 99999988887889999999999
Q ss_pred CCCCCCccceEEEEEcccccCCCccceEEEccc
Q 001703 608 GPFDQATSLGHAEINFLKHTSTELADMWVSLEG 640 (1024)
Q Consensus 608 ~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~ 640 (1024)
. |+...|||+++.|+..+..|-. .+||..
T Consensus 1143 m-fs~~~FiaqA~yPv~~ik~GfR---sVpLkN 1171 (1267)
T KOG1264|consen 1143 M-FSDPNFLAQATYPVKAIKSGFR---SVPLKN 1171 (1267)
T ss_pred c-cCCcceeeeeecchhhhhccce---eeeccc
Confidence 9 8988999999999999887754 357765
No 227
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=98.70 E-value=5.4e-08 Score=118.21 Aligned_cols=94 Identities=19% Similarity=0.420 Sum_probs=83.6
Q ss_pred CCeEEEEEEEEeeCCCCCC--CCCCCCcEEEEEECCE-EEeeecccCCCCCeEeEEEEEEeecCCCCeEEEEEEecCCCC
Q 001703 534 DGWVLTVALVEGVNLASSE--MTGLSDPYVVFTCNGK-TRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPF 610 (1024)
Q Consensus 534 ~~~~L~V~vi~a~~L~~~d--~~g~~DPyv~v~~~~~-~~kT~~~~~t~nP~WnE~f~f~~~~~~~~~L~v~V~D~d~~~ 610 (1024)
.-|+|.|+|.+|++|...+ .+++.|||+.+.+.++ .-||+++++++||+|||+|-.. ...-.+.|.++|||++. +
T Consensus 434 aIGVv~vkI~sa~~lk~~d~~i~~~vDpyit~~~~~r~~gkT~v~~nt~nPvwNEt~Yi~-lns~~d~L~LslyD~n~-~ 511 (1227)
T COG5038 434 AIGVVEVKIKSAEGLKKSDSTINGTVDPYITVTFSDRVIGKTRVKKNTLNPVWNETFYIL-LNSFTDPLNLSLYDFNS-F 511 (1227)
T ss_pred eeEEEEEEEeeccCcccccccccCCCCceEEEEeccccCCccceeeccCCccccceEEEE-ecccCCceeEEEEeccc-c
Confidence 5689999999999999998 5899999999998654 3499999999999999999998 55667899999999988 7
Q ss_pred CCCccceEEEEEcccccCC
Q 001703 611 DQATSLGHAEINFLKHTST 629 (1024)
Q Consensus 611 ~~dd~lG~~~i~l~~l~~~ 629 (1024)
.+|+.+|++.++|..+...
T Consensus 512 ~sd~vvG~~~l~L~~L~~~ 530 (1227)
T COG5038 512 KSDKVVGSTQLDLALLHQN 530 (1227)
T ss_pred CCcceeeeEEechHHhhhc
Confidence 9999999999999887543
No 228
>PLN02228 Phosphoinositide phospholipase C
Probab=98.66 E-value=2e-07 Score=109.50 Aligned_cols=115 Identities=19% Similarity=0.323 Sum_probs=91.4
Q ss_pred cEEEEEEEEeecCC------------CCCcEEEEEECC-----eEEeeecccCCCCCeE-eeEEEEEEecCCCCeEEEEE
Q 001703 4 TRLYVYVLQGQDLL------------AKDSYVKVQIGK-----HKSKSRILKNNSNPVW-NEEFVFRVHNIDDEELVVSV 65 (1024)
Q Consensus 4 ~~L~V~V~~Ar~L~------------~~DPyv~v~l~~-----~~~rT~v~~~t~nP~W-nE~f~f~v~~~~~~~L~v~V 65 (1024)
..|.|+|+.|.+|+ ..||||+|.+.+ .+.+|++++++.||+| ||+|.|.+..+.-..|+|.|
T Consensus 431 ~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA~lRf~V 510 (567)
T PLN02228 431 TTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELALLWFKV 510 (567)
T ss_pred ceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCceeEEEEEE
Confidence 47999999999872 268999999942 3579999999999999 99999998767778999999
Q ss_pred EecCCCCCCCCCCCCeeEEEEEeCccccccCCCCCCCEEEEeecCCCCCCCCccccEEEEEEEEEec
Q 001703 66 FQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTISLNGK 132 (1024)
Q Consensus 66 ~d~d~~~~f~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~~~~ 132 (1024)
+|+| ..+.++|+|+..+|+..|..+ -..++|.+..+ . .-....|++.+.+.+.
T Consensus 511 ~D~d-----~~~~d~figq~~lPv~~Lr~G------YR~VpL~~~~G-~--~l~~atLfv~~~~~~~ 563 (567)
T PLN02228 511 QDYD-----NDTQNDFAGQTCLPLPELKSG------VRAVRLHDRAG-K--AYKNTRLLVSFALDPP 563 (567)
T ss_pred EeCC-----CCCCCCEEEEEEcchhHhhCC------eeEEEccCCCC-C--CCCCeEEEEEEEEcCc
Confidence 9998 356899999999999999863 44678873332 2 2345678888887654
No 229
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=98.65 E-value=9.4e-08 Score=112.19 Aligned_cols=112 Identities=21% Similarity=0.405 Sum_probs=87.8
Q ss_pred EEEEEEEEeecCC----------CCCcEEEEEECC-----eEEeee-cccCCCCCeEeeEEEEEEecCCCCeEEEEEEec
Q 001703 5 RLYVYVLQGQDLL----------AKDSYVKVQIGK-----HKSKSR-ILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQH 68 (1024)
Q Consensus 5 ~L~V~V~~Ar~L~----------~~DPyv~v~l~~-----~~~rT~-v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~ 68 (1024)
+|+|.|+.+.+++ .+||||.|.+-+ ...+|+ +..|+-||.|+|+|.|.+..+.-.-|+|.|+|+
T Consensus 617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d~ 696 (746)
T KOG0169|consen 617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHDY 696 (746)
T ss_pred eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEec
Confidence 6999999999776 479999999954 348999 556699999999999999888889999999999
Q ss_pred CCCCCCCCCCCCeeEEEEEeCccccccCCCCCCCEEEEeecCCCCCCCCccccEEEEEEEEE
Q 001703 69 NDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTISLN 130 (1024)
Q Consensus 69 d~~~~f~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~~ 130 (1024)
| ..++|+|+|+..+|+..|..+ -.-++|... .|. .-..-.|.+.+.+.
T Consensus 697 d-----~~~~ddF~GQ~tlP~~~L~~G------yRhVpL~~~-~G~--~~~~asLfv~i~~~ 744 (746)
T KOG0169|consen 697 D-----YIGKDDFIGQTTLPVSELRQG------YRHVPLLSR-EGE--ALSSASLFVRIAIV 744 (746)
T ss_pred C-----CCCcccccceeeccHHHhhCc------eeeeeecCC-CCc--cccceeEEEEEEEe
Confidence 9 467899999999999999874 234777722 222 23344566655553
No 230
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=98.58 E-value=1.6e-07 Score=84.48 Aligned_cols=79 Identities=24% Similarity=0.441 Sum_probs=67.8
Q ss_pred EEEEEEEeecCC---------CCCcEEEEEECCe-EEeeecccCCCCCeEeeEEEEEEecCCCCeEEEEEEecCCCCCCC
Q 001703 6 LYVYVLQGQDLL---------AKDSYVKVQIGKH-KSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLF 75 (1024)
Q Consensus 6 L~V~V~~Ar~L~---------~~DPyv~v~l~~~-~~rT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~~~f~ 75 (1024)
|.|+|..|||+. .+||||.|+++.. +.||+.. .||.|||+|.|.+ .....+.+.|||..
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~~kaRTr~s---rnd~WnE~F~i~V--dk~nEiel~VyDk~------ 69 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRPETYVSIKVEDVERARTKPS---RNDRWNEDFEIPV--EKNNEEEVIVYDKG------ 69 (109)
T ss_pred CEEEEEEEecCccccchhhccCCCcEEEEEECCEEEEeccCC---CCCcccceEEEEe--cCCcEEEEEEEeCC------
Confidence 689999999999 5799999999875 7999884 7999999999999 36899999999988
Q ss_pred CCCCCeeEEEEEeCcccccc
Q 001703 76 GSSGELMGRVRVPVSSIAAE 95 (1024)
Q Consensus 76 ~~~d~~lG~~~i~L~~l~~~ 95 (1024)
....-.||-.-++++++...
T Consensus 70 ~~~~~Pi~llW~~~sdi~Ee 89 (109)
T cd08689 70 GDQPVPVGLLWLRLSDIAEE 89 (109)
T ss_pred CCeecceeeehhhHHHHHHH
Confidence 23556899988899888754
No 231
>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=98.55 E-value=1.6e-07 Score=104.70 Aligned_cols=118 Identities=21% Similarity=0.459 Sum_probs=98.6
Q ss_pred CcEEEEEEEEeecCC-------CCCcEEEEEECCeEEeeecccCCCCCeEe-eEEEEEEe--cCCCCeEEEEEEecCCCC
Q 001703 3 STRLYVYVLQGQDLL-------AKDSYVKVQIGKHKSKSRILKNNSNPVWN-EEFVFRVH--NIDDEELVVSVFQHNDDS 72 (1024)
Q Consensus 3 ~~~L~V~V~~Ar~L~-------~~DPyv~v~l~~~~~rT~v~~~t~nP~Wn-E~f~f~v~--~~~~~~L~v~V~d~d~~~ 72 (1024)
.++|.|.|..||+|+ ..|.||.|++++..++|.+..+++||.|| +.|.|+|. +..+..|.+.+.|+|
T Consensus 2 pgkl~vki~a~r~lpvmdkasd~tdafveik~~n~t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~d--- 78 (1169)
T KOG1031|consen 2 PGKLGVKIKAARHLPVMDKASDLTDAFVEIKFANTTFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHD--- 78 (1169)
T ss_pred CCcceeEEEeccCCcccccccccchheeEEEecccceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEeccc---
Confidence 368999999999999 57899999999999999999999999999 78999987 566789999999999
Q ss_pred CCCCCCCCeeEEEEEeCcccccc-------CCCCCCCEEEEeecCCCCCCCCccccEEEEEEEEE
Q 001703 73 GLFGSSGELMGRVRVPVSSIAAE-------DNHMLPPTWFSLETPKTRKFTNKDCGKILLTISLN 130 (1024)
Q Consensus 73 ~f~~~~d~~lG~~~i~L~~l~~~-------~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~~ 130 (1024)
.-+.+|-||.+.|.+..+-.. +.++....|+++.+.- ...+|+|.+-+...
T Consensus 79 --tysandaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdti-----hgirgeinvivkvd 136 (1169)
T KOG1031|consen 79 --TYSANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTI-----HGIRGEINVIVKVD 136 (1169)
T ss_pred --ccccccccceeeeccChHHHHhHHhhhcCCceEEeeeeecceec-----ccccceeEEEEEEe
Confidence 457899999999998887643 2335667899998332 34689988876654
No 232
>PLN02352 phospholipase D epsilon
Probab=98.37 E-value=2.2e-06 Score=102.96 Aligned_cols=116 Identities=11% Similarity=0.184 Sum_probs=88.3
Q ss_pred CCeEEEEEEEEeeCCCCC----CCC-CCCCcEEEEEECCEE-EeeecccCCCCCeEeEEEEEEeecCCC-CeEEEEEEec
Q 001703 534 DGWVLTVALVEGVNLASS----EMT-GLSDPYVVFTCNGKT-RTSSVQLQTCDPQWHDILEFDAMEEPP-SVLDVEVFDF 606 (1024)
Q Consensus 534 ~~~~L~V~vi~a~~L~~~----d~~-g~~DPyv~v~~~~~~-~kT~~~~~t~nP~WnE~f~f~~~~~~~-~~L~v~V~D~ 606 (1024)
-.|.|.++|.+|+-+... +.. ...||||.|.+++.+ -+| .+.-||+|||.|.+++ .+.. ..+.|+|.|
T Consensus 8 lhg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~~v~rt---~~~~~p~w~e~f~i~~-ah~~~~~~~f~vk~- 82 (758)
T PLN02352 8 FHGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGNKKVAKT---SHEYDRVWNQTFQILC-AHPLDSTITITLKT- 82 (758)
T ss_pred cccceEEEEEEeeehhhcccccccccCCCCceEEEEeCCcEEecC---CCCCCCccccceeEEe-eeecCCcEEEEEec-
Confidence 357999999999843322 111 123999999998654 477 5566999999999995 4445 789999988
Q ss_pred CCCCCCCccceEEEEEcccccCCCc-cceEEEccccccccccc-eeEEEEEEecc
Q 001703 607 DGPFDQATSLGHAEINFLKHTSTEL-ADMWVSLEGKLAQSAQS-KVHLRIFLENN 659 (1024)
Q Consensus 607 d~~~~~dd~lG~~~i~l~~l~~~~~-~~~w~~L~~~~~~~~~g-~l~l~~~~~~~ 659 (1024)
+ ..+||++.||+.++..+.. .+.|+++.+..+++..| +|++++.+...
T Consensus 83 ~-----~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 132 (758)
T PLN02352 83 K-----CSILGRFHIQAHQIVTEASFINGFFPLIMENGKPNPELKLRFMLWFRPA 132 (758)
T ss_pred C-----CeEEEEEEEEHHHhhCCCcccceEEEcccCCCCCCCCCEEEEEEEEEEh
Confidence 2 3699999999999988865 89999998876666555 88888876543
No 233
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=98.36 E-value=9.1e-07 Score=102.73 Aligned_cols=88 Identities=26% Similarity=0.397 Sum_probs=76.3
Q ss_pred CcEEEEEEEEeecCC-----CCCcEEEEEECC------eEEeeecccCCCCCeEe-eEEEEEEecCCCCeEEEEEEecCC
Q 001703 3 STRLYVYVLQGQDLL-----AKDSYVKVQIGK------HKSKSRILKNNSNPVWN-EEFVFRVHNIDDEELVVSVFQHND 70 (1024)
Q Consensus 3 ~~~L~V~V~~Ar~L~-----~~DPyv~v~l~~------~~~rT~v~~~t~nP~Wn-E~f~f~v~~~~~~~L~v~V~d~d~ 70 (1024)
.++|.|.|+.||.|+ .+-|||.|.+-+ ..++|.+..|++||+|| |+|+|+|..+.-..|+|.|+|.|
T Consensus 1064 p~~lsv~vigaRHL~k~gr~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~eeD- 1142 (1267)
T KOG1264|consen 1064 PMTLSVKVLGARHLPKLGRSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVVYEED- 1142 (1267)
T ss_pred ceEEEEEEeeccccccCCCCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEEeccc-
Confidence 478999999999999 355999999843 34677778899999999 99999999999999999999999
Q ss_pred CCCCCCCCCCeeEEEEEeCcccccc
Q 001703 71 DSGLFGSSGELMGRVRVPVSSIAAE 95 (1024)
Q Consensus 71 ~~~f~~~~d~~lG~~~i~L~~l~~~ 95 (1024)
..+...|||++..|+..+..+
T Consensus 1143 ----mfs~~~FiaqA~yPv~~ik~G 1163 (1267)
T KOG1264|consen 1143 ----MFSDPNFLAQATYPVKAIKSG 1163 (1267)
T ss_pred ----ccCCcceeeeeecchhhhhcc
Confidence 356677999999999998874
No 234
>PLN02352 phospholipase D epsilon
Probab=98.18 E-value=1.1e-05 Score=97.07 Aligned_cols=114 Identities=18% Similarity=0.317 Sum_probs=88.4
Q ss_pred CCcEEEEEEEEeecCC-----------CCCcEEEEEECCeE-EeeecccCCCCCeEeeEEEEEEecCCCCeEEEEEEecC
Q 001703 2 VSTRLYVYVLQGQDLL-----------AKDSYVKVQIGKHK-SKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHN 69 (1024)
Q Consensus 2 ~~~~L~V~V~~Ar~L~-----------~~DPyv~v~l~~~~-~rT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d 69 (1024)
.++.|.++|++|+-+. ..||||.|.+++.+ .|| .+..||+|+|.|.+.+.......+.|+|.|-
T Consensus 8 lhg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~~v~rt---~~~~~p~w~e~f~i~~ah~~~~~~~f~vk~~- 83 (758)
T PLN02352 8 FHGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGNKKVAKT---SHEYDRVWNQTFQILCAHPLDSTITITLKTK- 83 (758)
T ss_pred cccceEEEEEEeeehhhcccccccccCCCCceEEEEeCCcEEecC---CCCCCCccccceeEEeeeecCCcEEEEEecC-
Confidence 4688999999998543 23999999998765 788 6667999999999998544447899999762
Q ss_pred CCCCCCCCCCCeeEEEEEeCccccccCCCCCCCEEEEeecCCCCCCCCccccEEEEEEEEEecC
Q 001703 70 DDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTISLNGKG 133 (1024)
Q Consensus 70 ~~~~f~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~~~~~ 133 (1024)
..+||++.||+.++..++ .....|+++... .+++. ...+|+++++|.+..
T Consensus 84 ---------~~~ig~~~~p~~~~~~g~--~~~~~~~~~~~~-~~~p~--~~~~~~~~~~~~~~~ 133 (758)
T PLN02352 84 ---------CSILGRFHIQAHQIVTEA--SFINGFFPLIME-NGKPN--PELKLRFMLWFRPAE 133 (758)
T ss_pred ---------CeEEEEEEEEHHHhhCCC--cccceEEEcccC-CCCCC--CCCEEEEEEEEEEhh
Confidence 379999999999998752 237889999843 33422 226999999998863
No 235
>PLN02964 phosphatidylserine decarboxylase
Probab=98.06 E-value=6.2e-06 Score=98.68 Aligned_cols=91 Identities=15% Similarity=0.274 Sum_probs=79.0
Q ss_pred CCeEEEEEEEEeeCCCCCCCCCCCCcEE-EEEECCEEEeeecccCCCCCeEeEEEEEEeecCCCCeEEEEEEecCCCCCC
Q 001703 534 DGWVLTVALVEGVNLASSEMTGLSDPYV-VFTCNGKTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQ 612 (1024)
Q Consensus 534 ~~~~L~V~vi~a~~L~~~d~~g~~DPyv-~v~~~~~~~kT~~~~~t~nP~WnE~f~f~~~~~~~~~L~v~V~D~d~~~~~ 612 (1024)
-.|++.+++++|+ ++ ..|||. ++++|.+.+||.+.++|+||+||+...|.+........++.|||++. +++
T Consensus 52 ~~~~~~~~~~~~~----~~---~~~~~~~~~~~g~~~f~t~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~ 123 (644)
T PLN02964 52 FSGIALLTLVGAE----MK---FKDKWLACVSFGEQTFRTETSDSTDKPVWNSEKKLLLEKNGPHLARISVFETNR-LSK 123 (644)
T ss_pred ccCeEEEEeehhh----hc---cCCcEEEEEEecceeeeeccccccCCcccchhhceEeccCCcceEEEEEEecCC-CCH
Confidence 4689999999998 44 358884 57889999999999999999999999999877777778999999999 899
Q ss_pred CccceEEEEEcccccCCCcc
Q 001703 613 ATSLGHAEINFLKHTSTELA 632 (1024)
Q Consensus 613 dd~lG~~~i~l~~l~~~~~~ 632 (1024)
++++|.++++|..+...+..
T Consensus 124 n~lv~~~e~~~t~f~~kqi~ 143 (644)
T PLN02964 124 NTLVGYCELDLFDFVTQEPE 143 (644)
T ss_pred HHhhhheeecHhhccHHHHH
Confidence 99999999999887665543
No 236
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=98.04 E-value=3.1e-06 Score=102.16 Aligned_cols=105 Identities=24% Similarity=0.301 Sum_probs=90.2
Q ss_pred CeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEC-----CEEEeeecccCCCCCeEeEEEEEEeec---CCCCeEEEEEEec
Q 001703 535 GWVLTVALVEGVNLASSEMTGLSDPYVVFTCN-----GKTRTSSVQLQTCDPQWHDILEFDAME---EPPSVLDVEVFDF 606 (1024)
Q Consensus 535 ~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~-----~~~~kT~~~~~t~nP~WnE~f~f~~~~---~~~~~L~v~V~D~ 606 (1024)
.|+|+|-|..|++|+-..-+..+||||+.++- ..++||+++++|.||.|||.+.+.-++ .....|.+.||..
T Consensus 1523 ~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~~l~qReLQ~sVls~ 1602 (1639)
T KOG0905|consen 1523 NGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPKEILQQRELQVSVLSN 1602 (1639)
T ss_pred CceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCCchhhhhhheeeeeeecc
Confidence 57999999999999766557789999999994 347899999999999999999887322 2246899999999
Q ss_pred CCCCCCCccceEEEEEcccccCCCccceEEEccc
Q 001703 607 DGPFDQATSLGHAEINFLKHTSTELADMWVSLEG 640 (1024)
Q Consensus 607 d~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~ 640 (1024)
+. +..+.++|.+.|+|.++...+....||+|..
T Consensus 1603 ~~-~~en~~lg~v~i~L~~~~l~kE~~~Wy~lg~ 1635 (1639)
T KOG0905|consen 1603 GG-LLENVFLGGVNIPLLKVDLLKESVGWYNLGA 1635 (1639)
T ss_pred cc-eeeeeeeeeeecchhhcchhhhhcceeeccc
Confidence 98 8999999999999999988888889999964
No 237
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=98.03 E-value=3.1e-06 Score=102.12 Aligned_cols=99 Identities=24% Similarity=0.444 Sum_probs=84.3
Q ss_pred CCcEEEEEEEEeecCC------CCCcEEEEEECC-----eEEeeecccCCCCCeEeeEEEEE-Ee--cCCCCeEEEEEEe
Q 001703 2 VSTRLYVYVLQGQDLL------AKDSYVKVQIGK-----HKSKSRILKNNSNPVWNEEFVFR-VH--NIDDEELVVSVFQ 67 (1024)
Q Consensus 2 ~~~~L~V~V~~Ar~L~------~~DPyv~v~l~~-----~~~rT~v~~~t~nP~WnE~f~f~-v~--~~~~~~L~v~V~d 67 (1024)
.+++|.|-|.-|++|+ .+||||+.|+.. .++||+++++|.||.|||.+.+. ++ ....+.|.++||.
T Consensus 1522 ~~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~~l~qReLQ~sVls 1601 (1639)
T KOG0905|consen 1522 NNGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPKEILQQRELQVSVLS 1601 (1639)
T ss_pred cCceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCCchhhhhhheeeeeeec
Confidence 3688999999999996 689999999963 35899999999999999999998 54 3556899999999
Q ss_pred cCCCCCCCCCCCCeeEEEEEeCccccccCCCCCCCEEEEee
Q 001703 68 HNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLE 108 (1024)
Q Consensus 68 ~d~~~~f~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~ 108 (1024)
.+ ....+.|+|.+.|||.++..... ...||.|.
T Consensus 1602 ~~-----~~~en~~lg~v~i~L~~~~l~kE---~~~Wy~lg 1634 (1639)
T KOG0905|consen 1602 NG-----GLLENVFLGGVNIPLLKVDLLKE---SVGWYNLG 1634 (1639)
T ss_pred cc-----ceeeeeeeeeeecchhhcchhhh---hcceeecc
Confidence 99 35678999999999999987532 45799997
No 238
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=97.79 E-value=4.3e-05 Score=71.05 Aligned_cols=100 Identities=21% Similarity=0.435 Sum_probs=77.0
Q ss_pred EEEEEEEeecCC-------------------CCCcEEEEEE----CCeEEeeecccCCCCCeEeeEEEEEEe----c---
Q 001703 6 LYVYVLQGQDLL-------------------AKDSYVKVQI----GKHKSKSRILKNNSNPVWNEEFVFRVH----N--- 55 (1024)
Q Consensus 6 L~V~V~~Ar~L~-------------------~~DPyv~v~l----~~~~~rT~v~~~t~nP~WnE~f~f~v~----~--- 55 (1024)
|.|.|++|.+|. .-|+||++.+ .++..+|+++-++-.|.|+..+.|.++ .
T Consensus 1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~G 80 (143)
T cd08683 1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSG 80 (143)
T ss_pred CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCC
Confidence 468899999988 3589999996 346699999999999999999999865 1
Q ss_pred --------CCCCeEEEEEEecCCCCCC-----CCCCCCeeEEEEEeCccccccCCCCCCCEEEEe
Q 001703 56 --------IDDEELVVSVFQHNDDSGL-----FGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSL 107 (1024)
Q Consensus 56 --------~~~~~L~v~V~d~d~~~~f-----~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L 107 (1024)
.....+.++||+.....+. ...+|-.||.+.||+.+|... +.-...||++
T Consensus 81 e~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~--rsGitGW~pi 143 (143)
T cd08683 81 EAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTK--RSGITGWYPI 143 (143)
T ss_pred ccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhc--ccCccccccC
Confidence 1236789999998743320 123566999999999999875 3446789975
No 239
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.70 E-value=3.6e-05 Score=82.22 Aligned_cols=87 Identities=24% Similarity=0.327 Sum_probs=71.4
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEEC---C--EEEeeecccCCCCCeEeEEEEEEeecC--CCCeEEEEEEecCCC
Q 001703 537 VLTVALVEGVNLASSEMTGLSDPYVVFTCN---G--KTRTSSVQLQTCDPQWHDILEFDAMEE--PPSVLDVEVFDFDGP 609 (1024)
Q Consensus 537 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~---~--~~~kT~~~~~t~nP~WnE~f~f~~~~~--~~~~L~v~V~D~d~~ 609 (1024)
-|.|+++++..|..+|.+|-+||||..++. + -+.+|++.++|+||.+|++|.|.+... ....+.|.|||.+.
T Consensus 234 ~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~~~~~~i~pgdLa~~kv~lsvgd~~~- 312 (362)
T KOG1013|consen 234 GLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDEEFFYDIGPGDLAYKKVALSVGDYDI- 312 (362)
T ss_pred ceEEEEEEeeeeeccccCCCCCccceeecCCCcchhhcccCcchhccCCccccccccccCCccchhcceEEEeecccCC-
Confidence 468999999999999999999999999885 2 356889999999999999999995221 23489999999998
Q ss_pred CCCCccceEEEEEcc
Q 001703 610 FDQATSLGHAEINFL 624 (1024)
Q Consensus 610 ~~~dd~lG~~~i~l~ 624 (1024)
....+++|-...-+.
T Consensus 313 G~s~d~~GG~~~g~~ 327 (362)
T KOG1013|consen 313 GKSNDSIGGSMLGGY 327 (362)
T ss_pred CcCccCCCccccccc
Confidence 567889987665443
No 240
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=97.54 E-value=6.8e-05 Score=86.92 Aligned_cols=105 Identities=20% Similarity=0.222 Sum_probs=81.5
Q ss_pred cCCCCcccccccccCCCccccccceeeeeec---ccccccceeeeecEEEEEeccCCCeEEEEEecccceeeEecccccc
Q 001703 683 RSPHRNSTFQKLFALPPEEFLIKDFTCYLKR---KMPLQGRLFLSARIVGFYANLFGNKTKFFFLWEDIEDIQILSPSLA 759 (1024)
Q Consensus 683 ~s~~k~~~f~~~f~l~~~e~l~~~~~c~~~~---~~~~~G~lyis~~~~cF~s~~~g~~~~~~i~~~di~~i~k~~~~~~ 759 (1024)
.+..+++.| .+|+|| |.+.....|.++. ....+|+||++.+|+||.|.... .+.+++|+..|..|++...+ +
T Consensus 5 ~ar~~s~~f-~~Frlp--e~l~~~~~~~l~~p~s~~~~~G~l~~s~~f~cF~s~~~~-~c~~~~Pl~~vr~ve~~~~s-s 79 (671)
T KOG4347|consen 5 DARLKSEDF-AFFRLP--EKLDGSTMCNLWTPYSRYHEQGRLFLSTNFICFASDTEW-LCSFITPLLAVRSVERLDDS-S 79 (671)
T ss_pred hhhhccccc-ceeecc--hhcCceeecccCCCcchhhccceeeeccceEEeecCCcc-cceEeeehhhhhhhhccCcc-c
Confidence 445788999 999999 9999999998765 45688999999999999999876 58999999999999998721 1
Q ss_pred ccCCCcEEEEEeccCCcccCCCccccCCCCceEEEEEeecChhHHHHHHHH
Q 001703 760 TVGSPSLVIILWKGRGLDARHGAKSQDEEGRLRFYFQSFVSFNDASRTIMA 810 (1024)
Q Consensus 760 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~f~sf~~rd~~~~~l~~ 810 (1024)
.+++.+.+.+. +..-+.|+.+..|+..+.-+..
T Consensus 80 ----------------~~~~~i~~~~~--~~~~~~f~~~~~r~~~~~k~~~ 112 (671)
T KOG4347|consen 80 ----------------LFTQLISLFTS--NMVGMRFGGLTERLKLLSKLHL 112 (671)
T ss_pred ----------------cchhhhHHhhc--CcceEEecchhhHHHHHHHHhc
Confidence 12223333333 4468899999999997655543
No 241
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=97.32 E-value=9.6e-05 Score=88.99 Aligned_cols=81 Identities=26% Similarity=0.521 Sum_probs=72.4
Q ss_pred EEEEEEEEeecCC------CCCcEEEEEECCeE--EeeecccCCCCCeEeeEEEEEEecCCCCeEEEEEEecCCCCCCCC
Q 001703 5 RLYVYVLQGQDLL------AKDSYVKVQIGKHK--SKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLFG 76 (1024)
Q Consensus 5 ~L~V~V~~Ar~L~------~~DPyv~v~l~~~~--~rT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~~~f~~ 76 (1024)
.++|+|++|-+|. .+||||.+.+|+.. -++..+.+|+||+|++.|.+....+....|.+.|||+| ..
T Consensus 614 LvrVyvv~A~~L~p~D~ng~adpYv~l~lGk~~~~d~~~yip~tlnPVfgkmfel~~~lp~ek~l~v~vyd~D-----~~ 688 (1105)
T KOG1326|consen 614 LVRVYVVEAFSLQPSDGNGDADPYVKLLLGKKRTLDRAHYIPNTLNPVFGKMFELECLLPFEKDLIVEVYDHD-----LE 688 (1105)
T ss_pred eEEEEEEEeeeccccCCCCCcCceeeeeeccchhhhhhhcCcCCCCcHHHHHHHhhcccchhhcceeEEEEee-----cc
Confidence 4689999999999 69999999999876 78888999999999999999977788889999999999 36
Q ss_pred CCCCeeEEEEEeCc
Q 001703 77 SSGELMGRVRVPVS 90 (1024)
Q Consensus 77 ~~d~~lG~~~i~L~ 90 (1024)
++|+.||+..+.|.
T Consensus 689 ~~d~~iget~iDLE 702 (1105)
T KOG1326|consen 689 AQDEKIGETTIDLE 702 (1105)
T ss_pred cccchhhceehhhh
Confidence 78999999998873
No 242
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=97.19 E-value=0.00039 Score=64.79 Aligned_cols=82 Identities=16% Similarity=0.250 Sum_probs=63.8
Q ss_pred CCcEEEEEEC----CEEEeeecccCCCCCeEeEEEEEEee----c---C--------CCCeEEEEEEecCCCC-------
Q 001703 557 SDPYVVFTCN----GKTRTSSVQLQTCDPQWHDILEFDAM----E---E--------PPSVLDVEVFDFDGPF------- 610 (1024)
Q Consensus 557 ~DPyv~v~~~----~~~~kT~~~~~t~nP~WnE~f~f~~~----~---~--------~~~~L~v~V~D~d~~~------- 610 (1024)
-++||.+.+. ++.++|+++-++-.|.||-.++|.+. . . ...++.++||+.+...
T Consensus 33 VN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~Ge~~sLAElLe~~eiil~vwHr~~~s~~~~~~~ 112 (143)
T cd08683 33 VNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSGEAISLAELLESAEIILEVWHRNPKSAGDTIKI 112 (143)
T ss_pred cceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCCccccHHHHhhcceEEeeeeecCCccccceecc
Confidence 5899999963 67889999999999999999999853 0 1 1347999999986411
Q ss_pred --CCCccceEEEEEccccc-CCCccceEEEc
Q 001703 611 --DQATSLGHAEINFLKHT-STELADMWVSL 638 (1024)
Q Consensus 611 --~~dd~lG~~~i~l~~l~-~~~~~~~w~~L 638 (1024)
.+|=.||.+.||+.+|. .......|||+
T Consensus 113 ~~~~DilLG~v~IPl~~Ll~~rsGitGW~pi 143 (143)
T cd08683 113 ETSGDILLGTVKIPLRDLLTKRSGITGWYPI 143 (143)
T ss_pred CcCCcEEEEEEEeeHHHHhhcccCccccccC
Confidence 24558899999999964 44567889985
No 243
>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.16 E-value=0.00031 Score=76.56 Aligned_cols=106 Identities=23% Similarity=0.320 Sum_probs=88.0
Q ss_pred CeEEEEEEEEeeCCCCCCC-CCCCCcEEEEEEC--C---EEEeeecccCCCCCeEeEEEEEEeecCCCCeEEEEEEe-cC
Q 001703 535 GWVLTVALVEGVNLASSEM-TGLSDPYVVFTCN--G---KTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFD-FD 607 (1024)
Q Consensus 535 ~~~L~V~vi~a~~L~~~d~-~g~~DPyv~v~~~--~---~~~kT~~~~~t~nP~WnE~f~f~~~~~~~~~L~v~V~D-~d 607 (1024)
.|.+.|.|++|++|..+.. ...++|||+|++- + .+.+|+...+|++|.+-+...|. ..++...|.++||- +.
T Consensus 268 ~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~-~sp~~k~Lq~tv~gdyg 346 (405)
T KOG2060|consen 268 KGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFD-QSPPGKYLQGTVWGDYG 346 (405)
T ss_pred cCceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhc-cCCCccEEEEEEecccc
Confidence 4689999999999988654 3368999999994 2 25689999999999888899988 66778899999994 45
Q ss_pred CCCCCCccceEEEEEcccccCCC-ccceEEEccccc
Q 001703 608 GPFDQATSLGHAEINFLKHTSTE-LADMWVSLEGKL 642 (1024)
Q Consensus 608 ~~~~~dd~lG~~~i~l~~l~~~~-~~~~w~~L~~~~ 642 (1024)
+ ..++.|+|.+.|.+.++.... ....||+|-+..
T Consensus 347 R-md~k~fmg~aqi~l~eL~ls~~~~igwyKlfgss 381 (405)
T KOG2060|consen 347 R-MDHKSFMGVAQIMLDELNLSSSPVIGWYKLFGSS 381 (405)
T ss_pred c-cchHHHhhHHHHHhhhhccccccceeeeeccCCc
Confidence 5 677899999999999998776 778899998743
No 244
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=97.09 E-value=0.00036 Score=60.32 Aligned_cols=82 Identities=20% Similarity=0.389 Sum_probs=65.1
Q ss_pred EEEEEEeecCC-----CCCc--EEEE--EEC-CeEEeeecccCCCCCeEeeEEEEEEe--cCCCCeEEEEEEecCCCCCC
Q 001703 7 YVYVLQGQDLL-----AKDS--YVKV--QIG-KHKSKSRILKNNSNPVWNEEFVFRVH--NIDDEELVVSVFQHNDDSGL 74 (1024)
Q Consensus 7 ~V~V~~Ar~L~-----~~DP--yv~v--~l~-~~~~rT~v~~~t~nP~WnE~f~f~v~--~~~~~~L~v~V~d~d~~~~f 74 (1024)
.++|++|++|. .-+| |++- .+. ....||++.+...||+|.|||.|.+. ....-.|.|.|+..-
T Consensus 2 witv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~~~----- 76 (103)
T cd08684 2 WITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQTQT----- 76 (103)
T ss_pred EEEEEEecccccccccCcCCeeEEEEEEecCCCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeeccC-----
Confidence 57999999998 2234 5542 233 34589999999999999999999965 677888999999844
Q ss_pred CCCCCCeeEEEEEeCcccccc
Q 001703 75 FGSSGELMGRVRVPVSSIAAE 95 (1024)
Q Consensus 75 ~~~~d~~lG~~~i~L~~l~~~ 95 (1024)
.+...||.+.+.|.++...
T Consensus 77 --~RKe~iG~~sL~l~s~gee 95 (103)
T cd08684 77 --PRKRTIGECSLSLRTLSTQ 95 (103)
T ss_pred --CccceeeEEEeecccCCHH
Confidence 4788999999999888764
No 245
>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.96 E-value=0.0004 Score=75.74 Aligned_cols=101 Identities=17% Similarity=0.290 Sum_probs=83.9
Q ss_pred CcEEEEEEEEeecCC-------CCCcEEEEEECC-----eEEeeecccCCCCCeEeeEEEEEEecCCCCeEEEEEEe-cC
Q 001703 3 STRLYVYVLQGQDLL-------AKDSYVKVQIGK-----HKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQ-HN 69 (1024)
Q Consensus 3 ~~~L~V~V~~Ar~L~-------~~DPyv~v~l~~-----~~~rT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d-~d 69 (1024)
.+.|.|.|++|++|. .++|||+||+.. .+.+|+...+|++|.+-+...|+- .+....|.+.||- +.
T Consensus 268 ~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~-sp~~k~Lq~tv~gdyg 346 (405)
T KOG2060|consen 268 KGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQ-SPPGKYLQGTVWGDYG 346 (405)
T ss_pred cCceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhcc-CCCccEEEEEEecccc
Confidence 568999999999999 689999999953 358999999999999999999987 5888899999985 44
Q ss_pred CCCCCCCCCCCeeEEEEEeCccccccCCCCCCCEEEEeecCC
Q 001703 70 DDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPK 111 (1024)
Q Consensus 70 ~~~~f~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~ 111 (1024)
+ +-.+.|+|-+.+-+.+|... ..+...||+|-...
T Consensus 347 ---R--md~k~fmg~aqi~l~eL~ls--~~~~igwyKlfgss 381 (405)
T KOG2060|consen 347 ---R--MDHKSFMGVAQIMLDELNLS--SSPVIGWYKLFGSS 381 (405)
T ss_pred ---c--cchHHHhhHHHHHhhhhccc--cccceeeeeccCCc
Confidence 3 45677999999999999875 23677899998443
No 246
>PLN02964 phosphatidylserine decarboxylase
Probab=96.95 E-value=0.0012 Score=79.38 Aligned_cols=87 Identities=20% Similarity=0.326 Sum_probs=72.7
Q ss_pred CcEEEEEEEEeecCCCCCcEEE-EEECCeEEeeecccCCCCCeEeeEEEEEEecCCCCeEEEEEEecCCCCCCCCCCCCe
Q 001703 3 STRLYVYVLQGQDLLAKDSYVK-VQIGKHKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLFGSSGEL 81 (1024)
Q Consensus 3 ~~~L~V~V~~Ar~L~~~DPyv~-v~l~~~~~rT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~~~f~~~~d~~ 81 (1024)
.+.+.++|++|+ +...|||.. +++|.+.+||.+.++|+||+||+...|.|........++.|||.+ + .+.++.
T Consensus 53 ~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~f~t~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~s~n~l 126 (644)
T PLN02964 53 SGIALLTLVGAE-MKFKDKWLACVSFGEQTFRTETSDSTDKPVWNSEKKLLLEKNGPHLARISVFETN---R--LSKNTL 126 (644)
T ss_pred cCeEEEEeehhh-hccCCcEEEEEEecceeeeeccccccCCcccchhhceEeccCCcceEEEEEEecC---C--CCHHHh
Confidence 467889999987 446788655 677888999999999999999999999987444455699999999 5 579999
Q ss_pred eEEEEEeCcccccc
Q 001703 82 MGRVRVPVSSIAAE 95 (1024)
Q Consensus 82 lG~~~i~L~~l~~~ 95 (1024)
+|.+.++|.++...
T Consensus 127 v~~~e~~~t~f~~k 140 (644)
T PLN02964 127 VGYCELDLFDFVTQ 140 (644)
T ss_pred hhheeecHhhccHH
Confidence 99999999888764
No 247
>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]
Probab=96.80 E-value=0.0015 Score=71.73 Aligned_cols=126 Identities=14% Similarity=0.154 Sum_probs=96.1
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEEC-----CEEEeeecccCCCCCeEeEEEEEEeecCC-----------CCeEE
Q 001703 537 VLTVALVEGVNLASSEMTGLSDPYVVFTCN-----GKTRTSSVQLQTCDPQWHDILEFDAMEEP-----------PSVLD 600 (1024)
Q Consensus 537 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~-----~~~~kT~~~~~t~nP~WnE~f~f~~~~~~-----------~~~L~ 600 (1024)
.|.+.|+++.+++.....--.|-|+++.+. .++.+|.+++.|..|.|+|.|.+.+...+ ..-++
T Consensus 368 elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~g~k 447 (523)
T KOG3837|consen 368 ELELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRLGKK 447 (523)
T ss_pred HhHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhcCee
Confidence 677888888888765432335788888773 45678889999999999999999975432 23599
Q ss_pred EEEEecCCCCCCCccceEEEEEcccccCCCccceEEEccccccccccceeEEEEEEeccCCch
Q 001703 601 VEVFDFDGPFDQATSLGHAEINFLKHTSTELADMWVSLEGKLAQSAQSKVHLRIFLENNNGVE 663 (1024)
Q Consensus 601 v~V~D~d~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~g~l~l~~~~~~~~~~~ 663 (1024)
|+||.+..-+..|.++|.+.|-|..|...-.....++|.+. .+...|+|.+.+-+...-+..
T Consensus 448 feifhkggf~rSdkl~gt~nikle~Len~cei~e~~~l~DG-RK~vGGkLevKvRiR~Pi~~~ 509 (523)
T KOG3837|consen 448 FEIFHKGGFNRSDKLTGTGNIKLEILENMCEICEYLPLKDG-RKAVGGKLEVKVRIRQPIGDA 509 (523)
T ss_pred EEEeeccccccccceeceeeeeehhhhcccchhhceecccc-ccccCCeeEEEEEEecccchh
Confidence 99999987346788999999999998877777888898763 234578999999876554433
No 248
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=96.68 E-value=0.0057 Score=70.88 Aligned_cols=126 Identities=15% Similarity=0.237 Sum_probs=88.0
Q ss_pred EEeeecccCCCCCeEeeEEEEEEecCCCCeEEEEEEecCCCCCCCCCCCCeeEEEEEeCccccccCCCCCCCEEEEeecC
Q 001703 31 KSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETP 110 (1024)
Q Consensus 31 ~~rT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~~~f~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~ 110 (1024)
..+|.++++.+||.|-+.|.+.+.....+.|++.++|.+.... .....+|+|++.+.+..+..... ...-+.++ +
T Consensus 42 ~~rte~i~~~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~~~~-~l~~~dflg~~~c~l~~ivs~~~---~~~~l~~~-~ 116 (529)
T KOG1327|consen 42 VGRTEVIRNVLNPFFTKKFLLQYRFEKVQLLRFEVYDIDSRTP-DLSSADFLGTAECTLSQIVSSSG---LTGPLLLK-P 116 (529)
T ss_pred ccceeeeeccCCccceeeechhheeeeeeeEEEEEeecCCccC-Ccchhcccceeeeehhhhhhhhh---hhhhhhcc-c
Confidence 3699999999999999999998778888999999999883211 23567899999999999886421 11112222 1
Q ss_pred CCCCCCCccccEEEEEEEEEecCCeeeEEEEEeeccCCCCCCCCCCCCCeEEEEecC
Q 001703 111 KTRKFTNKDCGKILLTISLNGKGHNLSSNRLLYLHSNVSSNESKELEDPCVLSHDVS 167 (1024)
Q Consensus 111 ~~~~~~~~~~G~I~lsl~~~~~~~~l~v~v~~~~~~~L~~~~~~g~sdp~vkv~l~~ 167 (1024)
. .....|.|.+.+.-... .-.+..+..++.+|...|..+.+|||..++-..
T Consensus 117 ~----~~~~~g~iti~aee~~~--~~~~~~~~~~~~~ld~kd~f~ksd~~l~~~~~~ 167 (529)
T KOG1327|consen 117 G----KNAGSGTITISAEEDES--DNDVVQFSFRAKNLDPKDFFSKSDPYLEFYKRV 167 (529)
T ss_pred C----ccCCcccEEEEeecccc--cCceeeeeeeeeecCcccccccCCcceEEEEec
Confidence 1 13345666555544333 333333344468999999999999999987664
No 249
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=96.56 E-value=0.0038 Score=72.34 Aligned_cols=86 Identities=19% Similarity=0.317 Sum_probs=68.9
Q ss_pred EEEEeeCCCCCCCCCCCCcEEEEEEC------CEEEeeecccCCCCCeEeEEE----EEEeecCCCCeEEEEEEecCCCC
Q 001703 541 ALVEGVNLASSEMTGLSDPYVVFTCN------GKTRTSSVQLQTCDPQWHDIL----EFDAMEEPPSVLDVEVFDFDGPF 610 (1024)
Q Consensus 541 ~vi~a~~L~~~d~~g~~DPyv~v~~~------~~~~kT~~~~~t~nP~WnE~f----~f~~~~~~~~~L~v~V~D~d~~~ 610 (1024)
-.++|++|..+|.++++|||..+.-- ...++|.++++++||.|-+.. .+. ..++...+.+.+||+|. -
T Consensus 141 ~~~~~~~ld~kd~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~~~i~~~~l~-~~~~~~~~~i~~~d~~~-~ 218 (529)
T KOG1327|consen 141 FSFRAKNLDPKDFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAPFSISLQSLC-SKDGNRPIQIECYDYDS-N 218 (529)
T ss_pred eeeeeeecCcccccccCCcceEEEEecCCCceeeccccceeccCCCCcccccccchhhhc-ccCCCCceEEEEeccCC-C
Confidence 34568999999999999999887652 235699999999999998532 111 23456789999999998 5
Q ss_pred CCCccceEEEEEcccccC
Q 001703 611 DQATSLGHAEINFLKHTS 628 (1024)
Q Consensus 611 ~~dd~lG~~~i~l~~l~~ 628 (1024)
++++++|++..++..+..
T Consensus 219 ~~~~~ig~~~tt~~~~~~ 236 (529)
T KOG1327|consen 219 GKHDLIGKFQTTLSELQE 236 (529)
T ss_pred CCcCceeEecccHHHhcc
Confidence 888999999999998865
No 250
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=96.27 E-value=0.047 Score=54.49 Aligned_cols=89 Identities=17% Similarity=0.236 Sum_probs=63.3
Q ss_pred CcEEEEEEEEeecCC---CCCcEEEEEE--CCeE----EeeecccCCCCCeEeeEEEEEEe---cCCCCeEEEEEEecCC
Q 001703 3 STRLYVYVLQGQDLL---AKDSYVKVQI--GKHK----SKSRILKNNSNPVWNEEFVFRVH---NIDDEELVVSVFQHND 70 (1024)
Q Consensus 3 ~~~L~V~V~~Ar~L~---~~DPyv~v~l--~~~~----~rT~v~~~t~nP~WnE~f~f~v~---~~~~~~L~v~V~d~d~ 70 (1024)
+..++|+|++|.++. .+|-||.+.+ +++. ..|+.+.. .++.|||.+.|++. -+....|.|+||+...
T Consensus 7 ~~~~~v~i~~~~~~~~~~~~~l~V~v~l~~g~~~L~~pv~T~~v~~-~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~~~ 85 (158)
T cd08398 7 NSNLRIKILCATYVNVNDIDKIYVRTGIYHGGEPLCDNVNTQRVPC-SNPRWNEWLDYDIYIPDLPRSARLCLSICSVKG 85 (158)
T ss_pred CCCeEEEEEeeccCCCCCcCeEEEEEEEEECCEEccCeeEecccCC-CCCccceeEEcccchhcCChhheEEEEEEEEec
Confidence 567999999999998 5677888866 4432 34544443 68999999999865 4667899999999772
Q ss_pred CCCCCCCCCCeeEEEEEeCcccc
Q 001703 71 DSGLFGSSGELMGRVRVPVSSIA 93 (1024)
Q Consensus 71 ~~~f~~~~d~~lG~~~i~L~~l~ 93 (1024)
... .......+|.+.++|-+..
T Consensus 86 ~~~-~k~~~~~iG~~ni~LFd~~ 107 (158)
T cd08398 86 RKG-AKEEHCPLAWGNINLFDYT 107 (158)
T ss_pred ccC-CCCceEEEEEEEEEEECCC
Confidence 100 0012357999999987744
No 251
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=96.13 E-value=0.064 Score=60.09 Aligned_cols=121 Identities=16% Similarity=0.284 Sum_probs=92.9
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEECCEEEeeecccCCCCCeEeEEEEEEeec-------CCCCeEEEEEEecCCCC
Q 001703 538 LTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAME-------EPPSVLDVEVFDFDGPF 610 (1024)
Q Consensus 538 L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~~~~t~nP~WnE~f~f~~~~-------~~~~~L~v~V~D~d~~~ 610 (1024)
+.|.|++|+|.+... .-.-.+..++++....|..+..+-.|.||.++.+++.. .....|++++|-.|..-
T Consensus 2 ivl~i~egr~F~~~~---~~~~vv~a~~ng~~l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~~~ 78 (340)
T PF12416_consen 2 IVLSILEGRNFPQRP---RHPIVVEAKFNGESLETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVDGST 78 (340)
T ss_pred EEEEEecccCCCCCC---CccEEEEEEeCCceeeecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEecCCC
Confidence 578999999999873 34567778999999999999999999999999998521 23458999999998313
Q ss_pred CCCccceEEEEEcccc---cCC--CccceEEEcccc--ccccccceeEEEEEEeccCC
Q 001703 611 DQATSLGHAEINFLKH---TST--ELADMWVSLEGK--LAQSAQSKVHLRIFLENNNG 661 (1024)
Q Consensus 611 ~~dd~lG~~~i~l~~l---~~~--~~~~~w~~L~~~--~~~~~~g~l~l~~~~~~~~~ 661 (1024)
+..+.+|.+.+||..+ ..+ .....||+|-+- .-+...-+|.|.+.++....
T Consensus 79 ~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~~~~y~~~KPEl~l~l~ie~~~~ 136 (340)
T PF12416_consen 79 GKRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSSSSKYKKHKPELLLSLSIEDDSK 136 (340)
T ss_pred CcceeccEEEEEccccccccccccccCCCeeEccccccccccCCccEEEEEEEecccc
Confidence 6778999999999988 444 466789999874 22223556777777665544
No 252
>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]
Probab=95.94 E-value=0.0063 Score=67.07 Aligned_cols=115 Identities=17% Similarity=0.327 Sum_probs=87.2
Q ss_pred EEEEEEEEeecCC------CCCcEEEEEEC-----CeEEeeecccCCCCCeEeeEEEEEEecCC-----------CCeEE
Q 001703 5 RLYVYVLQGQDLL------AKDSYVKVQIG-----KHKSKSRILKNNSNPVWNEEFVFRVHNID-----------DEELV 62 (1024)
Q Consensus 5 ~L~V~V~~Ar~L~------~~DPyv~v~l~-----~~~~rT~v~~~t~nP~WnE~f~f~v~~~~-----------~~~L~ 62 (1024)
.|.+.|+++++++ ..|-||++.+. .++.+|.++++|.+|.|+|.|.+.+.... ...+.
T Consensus 368 elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~g~k 447 (523)
T KOG3837|consen 368 ELELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRLGKK 447 (523)
T ss_pred HhHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhcCee
Confidence 3566777777777 35789998872 35689999999999999999999985211 25689
Q ss_pred EEEEecCCCCCCCCCCCCeeEEEEEeCccccccCCCCCCCEEEEeecCCCCCCCCccccEEEEEEEEEe
Q 001703 63 VSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTISLNG 131 (1024)
Q Consensus 63 v~V~d~d~~~~f~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~~~ 131 (1024)
|+||+.. .| ..+|.++|.+.|.|.-|... ......++|.+.+ ...+|+|.+.+....
T Consensus 448 feifhkg---gf-~rSdkl~gt~nikle~Len~---cei~e~~~l~DGR-----K~vGGkLevKvRiR~ 504 (523)
T KOG3837|consen 448 FEIFHKG---GF-NRSDKLTGTGNIKLEILENM---CEICEYLPLKDGR-----KAVGGKLEVKVRIRQ 504 (523)
T ss_pred EEEeecc---cc-ccccceeceeeeeehhhhcc---cchhhceeccccc-----cccCCeeEEEEEEec
Confidence 9999999 54 67899999999999887753 2345567887433 357899988888754
No 253
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=95.93 E-value=0.051 Score=53.51 Aligned_cols=123 Identities=15% Similarity=0.201 Sum_probs=87.0
Q ss_pred eEEEEEEEEeeCCCCCCCC--CCCCcE--EEEEECCEEEeeecccCCCCCeEeEEEEEEeecCC-------------CCe
Q 001703 536 WVLTVALVEGVNLASSEMT--GLSDPY--VVFTCNGKTRTSSVQLQTCDPQWHDILEFDAMEEP-------------PSV 598 (1024)
Q Consensus 536 ~~L~V~vi~a~~L~~~d~~--g~~DPy--v~v~~~~~~~kT~~~~~t~nP~WnE~f~f~~~~~~-------------~~~ 598 (1024)
..|.|+|+.|+-...--.. |..+.- +-+.+++|.++|+.+.-+.+|.++|.|-|++.... ...
T Consensus 9 ~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~QRF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~~~p 88 (156)
T PF15627_consen 9 RYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRGQRFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLSISDP 88 (156)
T ss_pred eEEEEEEeCchhHhhhhhccCCCCceEEEEEEEecCceEecCCcccccCCCCCCcEEEEecccccccccchhHhhcCCCc
Confidence 3688888888854332110 333433 44555799999999999999999999999975432 346
Q ss_pred EEEEEEecCCCCCCCccceEEEEEcccccCCCcc--ceEEEcccccc--ccccceeEEEEEEecc
Q 001703 599 LDVEVFDFDGPFDQATSLGHAEINFLKHTSTELA--DMWVSLEGKLA--QSAQSKVHLRIFLENN 659 (1024)
Q Consensus 599 L~v~V~D~d~~~~~dd~lG~~~i~l~~l~~~~~~--~~w~~L~~~~~--~~~~g~l~l~~~~~~~ 659 (1024)
|++.|.--|. .+...++|...+++..+...+.. ..-+.|.+... +...|-|.+++++-+.
T Consensus 89 ihivli~~d~-~~~~~Lv~s~~ldWR~vL~s~~~~~~~~vEL~G~~~e~kv~~GiL~l~lELlP~ 152 (156)
T PF15627_consen 89 IHIVLIRTDP-SGETTLVGSHFLDWRKVLCSGNGSTSFTVELCGVGPESKVPVGILDLRLELLPN 152 (156)
T ss_pred eEEEEEEecC-CCceEeeeeceehHHHHhccCCCccceeEEEeccCCCCccceeEEEEEEEeecC
Confidence 8888887776 56668999999999997766655 34445544322 2457999999987544
No 254
>PF10698 DUF2505: Protein of unknown function (DUF2505); InterPro: IPR019639 This entry represents proteins found Actinobacteria and Proteobacteria. The function is not known.
Probab=95.93 E-value=0.38 Score=48.35 Aligned_cols=147 Identities=13% Similarity=0.124 Sum_probs=100.1
Q ss_pred cccccCCHHhHhhhccCChhHHHHHHHhCCcceeecccccCCCCceEEEEEEEEcc---c--ccCC-Cc--eecEEEEEe
Q 001703 857 NAELPISVKALMEMFDGGKLEHQVMEKSGCHNYVTTPWDLVKPGVCERHLSYRFNR---H--VSIF-GG--EVTCTQQKS 928 (1024)
Q Consensus 857 ~~~~~~~~~~~f~lf~~~~~~~~~~~~~~~~~i~~~~W~~~~~~~~~R~~sy~~n~---~--~~~~-~~--~~~~~Q~~~ 928 (1024)
..+||++++++|.+|.+..|++..++..|..+..+..-..+.++ ....+.-.+.. | +..+ ++ .+..+++.
T Consensus 4 ~~~~~~~~~~v~~~~~d~~y~~~r~~~~g~~~~~~~~~~~~~~g-~~v~~~~~v~~~~lP~~~~k~v~~~l~v~~~e~w- 81 (159)
T PF10698_consen 4 SVEYPAPVERVWAAFTDEDYWEARCAALGADNAEVESFEVDGDG-VRVTVRQTVPADKLPSAARKFVGGDLRVTRTETW- 81 (159)
T ss_pred EEEcCCCHHHHHHHHcCHHHHHHHHHHcCCCCceEEEEEEcCCe-EEEEEEEecChhhCCHHHHHhcCCCeEEEEEEEE-
Confidence 35699999999999999999999999999867777766555444 32222222211 1 1111 12 33333433
Q ss_pred ecCCCCcEEEEEEEecCCCCCCCceEEEEEEEEEecCCCCCccEEEEEEEEEEecccchhhhhhhhhHHhHHHHHHHHHH
Q 001703 929 PLASGEGWIVNEVMSLHDVPFDDHFRVHFRYEIEKSPLAHNACKCAIYIGISWLKSTKFQQRITQNITEKFTHRLKEMIE 1008 (1024)
Q Consensus 929 ~~~~~~~~vv~~~~~~~dVPygd~F~v~~r~~i~~~~~~~~~c~l~v~~~V~f~Kst~~K~~Ie~~~~~g~~~~~~~~~~ 1008 (1024)
...++..+-.+...+++ |.-..+...+.++..+ .+|++.+...|.- |=+.+-++||+.+.+.+.+.+..--+
T Consensus 82 ~~~~~g~~~g~~~~~~~----G~P~~~~G~~~L~~~~---~gt~~~~~g~v~v-~VPlvGgkiE~~v~~~~~~~~~~e~~ 153 (159)
T PF10698_consen 82 TPLDDGRRTGTFTVSIP----GAPVSISGTMRLRPDG---GGTRLTVEGEVKV-KVPLVGGKIEKAVAENLRKLLEAEQE 153 (159)
T ss_pred ecCCCCeEEEEEEEEec----CceEEEEEEEEEecCC---CCEEEEEEEEEEE-EEccccHHHHHHHHHHHHHHHHHHHH
Confidence 22345556555444434 5556789999999855 7899988888875 55789999999999999988888777
Q ss_pred HHHHH
Q 001703 1009 LVERE 1013 (1024)
Q Consensus 1009 ~~~~~ 1013 (1024)
++.+.
T Consensus 154 ~~~~w 158 (159)
T PF10698_consen 154 FTAEW 158 (159)
T ss_pred HHHhh
Confidence 76654
No 255
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=95.91 E-value=0.11 Score=58.40 Aligned_cols=120 Identities=16% Similarity=0.360 Sum_probs=92.8
Q ss_pred EEEEEEEeecCC---CCCcEEEEEECCeEEeeecccCCCCCeEeeEEEEEEe-------cCCCCeEEEEEEecCCCCCCC
Q 001703 6 LYVYVLQGQDLL---AKDSYVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVH-------NIDDEELVVSVFQHNDDSGLF 75 (1024)
Q Consensus 6 L~V~V~~Ar~L~---~~DPyv~v~l~~~~~rT~v~~~t~nP~WnE~f~f~v~-------~~~~~~L~v~V~d~d~~~~f~ 75 (1024)
+.|+|++|||.+ ...-.+..+++++...|..+..+-.|.||-++.+++. ......|++++|..|. .
T Consensus 2 ivl~i~egr~F~~~~~~~~vv~a~~ng~~l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~----~ 77 (340)
T PF12416_consen 2 IVLSILEGRNFPQRPRHPIVVEAKFNGESLETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVDG----S 77 (340)
T ss_pred EEEEEecccCCCCCCCccEEEEEEeCCceeeecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEecC----C
Confidence 568999999999 3445777889999999999999999999999999975 2445789999999882 1
Q ss_pred CCCCCeeEEEEEeCccc---cccCCCCCCCEEEEeecCCCCCCCCccccEEEEEEEEEec
Q 001703 76 GSSGELMGRVRVPVSSI---AAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTISLNGK 132 (1024)
Q Consensus 76 ~~~d~~lG~~~i~L~~l---~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~~~~ 132 (1024)
.+....||-+.++|..+ .. .+......||+|...++. -.+..-+|+|++..+..
T Consensus 78 ~~~re~iGyv~LdLRsa~~~~~-~~~~~~~~W~~LL~~~~~--y~~~KPEl~l~l~ie~~ 134 (340)
T PF12416_consen 78 TGKRESIGYVVLDLRSAVVPQE-KNQKQKPKWYKLLSSSSK--YKKHKPELLLSLSIEDD 134 (340)
T ss_pred CCcceeccEEEEEccccccccc-cccccCCCeeEccccccc--cccCCccEEEEEEEecc
Confidence 34678999999999998 32 223467899999844221 12356789998888765
No 256
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=95.29 E-value=0.066 Score=64.45 Aligned_cols=83 Identities=31% Similarity=0.520 Sum_probs=68.4
Q ss_pred cEEEEEEEEeecCC--CCCcEEEEEECC-------eEEeeecccC-CCCCeEee-EEEEE-EecCCCCeEEEEEEecCCC
Q 001703 4 TRLYVYVLQGQDLL--AKDSYVKVQIGK-------HKSKSRILKN-NSNPVWNE-EFVFR-VHNIDDEELVVSVFQHNDD 71 (1024)
Q Consensus 4 ~~L~V~V~~Ar~L~--~~DPyv~v~l~~-------~~~rT~v~~~-t~nP~WnE-~f~f~-v~~~~~~~L~v~V~d~d~~ 71 (1024)
.+|.|+||++.-|. ....||.|.+-+ ..+||++... +.||+|+| -|.|. |--+.-..|+|.||+.+
T Consensus 703 ~t~sV~VISgqFLSdrkvgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRiavyeEg-- 780 (1189)
T KOG1265|consen 703 ATLSVTVISGQFLSDRKVGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIAVYEEG-- 780 (1189)
T ss_pred eeEEEEEEeeeeccccccCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhheeeeeeccC--
Confidence 57899999999998 788999999832 3478888765 99999995 48998 43577788999999987
Q ss_pred CCCCCCCCCeeEEEEEeCcccccc
Q 001703 72 SGLFGSSGELMGRVRVPVSSIAAE 95 (1024)
Q Consensus 72 ~~f~~~~d~~lG~~~i~L~~l~~~ 95 (1024)
..|||+-.+|+..+..+
T Consensus 781 -------gK~ig~RIlpvd~l~~G 797 (1189)
T KOG1265|consen 781 -------GKFIGQRILPVDGLNAG 797 (1189)
T ss_pred -------CceeeeeccchhcccCc
Confidence 26999999999888763
No 257
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=95.22 E-value=0.019 Score=49.97 Aligned_cols=95 Identities=14% Similarity=0.226 Sum_probs=66.9
Q ss_pred EEEEEEeeCCCCCCCCCC-CCcEEE--EEECC-EEEeeecccCCCCCeEeEEEEEEee--cCCCCeEEEEEEecCCCCCC
Q 001703 539 TVALVEGVNLASSEMTGL-SDPYVV--FTCNG-KTRTSSVQLQTCDPQWHDILEFDAM--EEPPSVLDVEVFDFDGPFDQ 612 (1024)
Q Consensus 539 ~V~vi~a~~L~~~d~~g~-~DPyv~--v~~~~-~~~kT~~~~~t~nP~WnE~f~f~~~--~~~~~~L~v~V~D~d~~~~~ 612 (1024)
-|+|+.+++|.-....|- .--|++ +++.+ ..+||++.....||+++|+|.|.+. .-+.-.|.|.|+. -+ .+
T Consensus 2 witv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~-~~--~R 78 (103)
T cd08684 2 WITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQT-QT--PR 78 (103)
T ss_pred EEEEEEecccccccccCcCCeeEEEEEEecCCCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeec-cC--Cc
Confidence 478899999875443332 223443 34444 3579999999999999999999973 2344589999998 32 56
Q ss_pred CccceEEEEEcccccCCCccceEEE
Q 001703 613 ATSLGHAEINFLKHTSTELADMWVS 637 (1024)
Q Consensus 613 dd~lG~~~i~l~~l~~~~~~~~w~~ 637 (1024)
.+.||.+.+.+.++..++ .+.|..
T Consensus 79 Ke~iG~~sL~l~s~geeE-~~HW~e 102 (103)
T cd08684 79 KRTIGECSLSLRTLSTQE-TDHWLE 102 (103)
T ss_pred cceeeEEEeecccCCHHH-hhhhhc
Confidence 689999999999865443 455654
No 258
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=95.13 E-value=0.035 Score=66.72 Aligned_cols=112 Identities=16% Similarity=0.226 Sum_probs=82.5
Q ss_pred CeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEC-------CEEEeeecc-cCCCCCeEeE-EEEEEe-ecCCCCeEEEEEE
Q 001703 535 GWVLTVALVEGVNLASSEMTGLSDPYVVFTCN-------GKTRTSSVQ-LQTCDPQWHD-ILEFDA-MEEPPSVLDVEVF 604 (1024)
Q Consensus 535 ~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~-------~~~~kT~~~-~~t~nP~WnE-~f~f~~-~~~~~~~L~v~V~ 604 (1024)
.+.+.|+||+|.=|..++. ..||.|.+- .+.++|+++ .+++||+|+| .|.|.= .-+.-..|+|.||
T Consensus 702 A~t~sV~VISgqFLSdrkv----gtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRiavy 777 (1189)
T KOG1265|consen 702 AATLSVTVISGQFLSDRKV----GTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIAVY 777 (1189)
T ss_pred EeeEEEEEEeeeecccccc----CceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhheeeeee
Confidence 4689999999999988763 379999883 345788884 5799999995 688863 2334568999999
Q ss_pred ecCCCCCCCccceEEEEEcccccCCCccceEEEcccccccc-ccceeEEEEEEec
Q 001703 605 DFDGPFDQATSLGHAEINFLKHTSTELADMWVSLEGKLAQS-AQSKVHLRIFLEN 658 (1024)
Q Consensus 605 D~d~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~-~~g~l~l~~~~~~ 658 (1024)
+... .+||+-.+|+..+..|..+ +.|....++. .-..|.+.+.+..
T Consensus 778 eEgg-----K~ig~RIlpvd~l~~GYrh---v~LRse~Nqpl~lp~Lfv~i~~kd 824 (1189)
T KOG1265|consen 778 EEGG-----KFIGQRILPVDGLNAGYRH---VCLRSESNQPLTLPALFVYIVLKD 824 (1189)
T ss_pred ccCC-----ceeeeeccchhcccCccee---EEecCCCCCccccceeEEEEEeec
Confidence 9775 6999999999999988754 4666544433 2345666665543
No 259
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=94.98 E-value=0.15 Score=51.02 Aligned_cols=101 Identities=17% Similarity=0.332 Sum_probs=68.1
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEE--CCEEE----eeecccCCCCCeEeEEEEEEeec---CCCCeEEEEEEecC
Q 001703 537 VLTVALVEGVNLASSEMTGLSDPYVVFTC--NGKTR----TSSVQLQTCDPQWHDILEFDAME---EPPSVLDVEVFDFD 607 (1024)
Q Consensus 537 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~--~~~~~----kT~~~~~t~nP~WnE~f~f~~~~---~~~~~L~v~V~D~d 607 (1024)
.++|+++.|.++...+ .+|-||.+.+ |++.. .|+.+.- .+|.|||.++|++.- +....|.|+||+..
T Consensus 9 ~~~v~i~~~~~~~~~~---~~~l~V~v~l~~g~~~L~~pv~T~~v~~-~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~~ 84 (158)
T cd08398 9 NLRIKILCATYVNVND---IDKIYVRTGIYHGGEPLCDNVNTQRVPC-SNPRWNEWLDYDIYIPDLPRSARLCLSICSVK 84 (158)
T ss_pred CeEEEEEeeccCCCCC---cCeEEEEEEEEECCEEccCeeEecccCC-CCCccceeEEcccchhcCChhheEEEEEEEEe
Confidence 6789999999988754 4688888755 55433 3443333 679999999998621 33559999999976
Q ss_pred CCCC---CCccceEEEEEcccccCCCccceEEEccccccccccceeEEEEEE
Q 001703 608 GPFD---QATSLGHAEINFLKHTSTELADMWVSLEGKLAQSAQSKVHLRIFL 656 (1024)
Q Consensus 608 ~~~~---~dd~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~g~l~l~~~~ 656 (1024)
..-+ ....+|.+.++|-+-.. .| .+|...|.++.
T Consensus 85 ~~~~~k~~~~~iG~~ni~LFd~~~--------~L-------r~G~~~L~lW~ 121 (158)
T cd08398 85 GRKGAKEEHCPLAWGNINLFDYTD--------TL-------VSGKMALNLWP 121 (158)
T ss_pred cccCCCCceEEEEEEEEEEECCCC--------hh-------hCCCEEEEEEc
Confidence 4101 12468999988876221 12 25777777774
No 260
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=94.93 E-value=0.14 Score=52.22 Aligned_cols=91 Identities=15% Similarity=0.236 Sum_probs=62.0
Q ss_pred CcEEEEEEEEeecCCC----CCcEEEEEE--CCeE----EeeecccCCCCCeEeeEEEEEEe---cCCCCeEEEEEEecC
Q 001703 3 STRLYVYVLQGQDLLA----KDSYVKVQI--GKHK----SKSRILKNNSNPVWNEEFVFRVH---NIDDEELVVSVFQHN 69 (1024)
Q Consensus 3 ~~~L~V~V~~Ar~L~~----~DPyv~v~l--~~~~----~rT~v~~~t~nP~WnE~f~f~v~---~~~~~~L~v~V~d~d 69 (1024)
...++|+|+.+.+|.. .+-||.+.+ |++. ..|+.+.-+..+.|||.+.|++. -+....|.|.||+..
T Consensus 7 ~~~f~i~i~~~~~~~~~~~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~~ 86 (173)
T cd08693 7 EEKFSITLHKISNLNAAERTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYEVS 86 (173)
T ss_pred CCCEEEEEEEeccCccCCCCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEEec
Confidence 4578999999999982 445666544 4432 46666655678999999999865 466789999999976
Q ss_pred CCCCC-----------CCCCCCeeEEEEEeCcccc
Q 001703 70 DDSGL-----------FGSSGELMGRVRVPVSSIA 93 (1024)
Q Consensus 70 ~~~~f-----------~~~~d~~lG~~~i~L~~l~ 93 (1024)
...+. ..+.+..||.+.++|-+..
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd~~ 121 (173)
T cd08693 87 KKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFDYK 121 (173)
T ss_pred ccccccccccccccccccCcceEEEEEeEEEEccc
Confidence 21100 0012458888888876643
No 261
>PF14470 bPH_3: Bacterial PH domain
Probab=94.79 E-value=0.19 Score=45.60 Aligned_cols=90 Identities=18% Similarity=0.179 Sum_probs=63.6
Q ss_pred CCCccccccceeeeeecc-cccccceeeeecEEEEEecc-CCCeEEEEEecccceeeEeccccccccCCCcEEEEEeccC
Q 001703 697 LPPEEFLIKDFTCYLKRK-MPLQGRLFLSARIVGFYANL-FGNKTKFFFLWEDIEDIQILSPSLATVGSPSLVIILWKGR 774 (1024)
Q Consensus 697 l~~~e~l~~~~~c~~~~~-~~~~G~lyis~~~~cF~s~~-~g~~~~~~i~~~di~~i~k~~~~~~~~~~~~i~i~~~~~~ 774 (1024)
|.++|.+.....|.+... -...|-+++|...+-|+..- ++......|||++|.+|+..++-+ + ..|.|.+
T Consensus 1 L~~~E~I~~~~~~~~~~~~~~~~g~l~~TnkRlif~~~~~~~~~~~~~i~y~~I~~v~~~~g~~---~-~~i~i~~---- 72 (96)
T PF14470_consen 1 LKEDEEIEYVAVGSYNYFFTSFPGVLVLTNKRLIFYSKGMFGGKKFESIPYDDITSVSFKKGIL---G-GKITIET---- 72 (96)
T ss_pred CcCCCEEEEEEEEEEeecccCceeEEEEeCCEEEEEEcccCCCceEEEEEhhheEEEEEEcccc---c-cEEEEEE----
Confidence 456888888888876632 23559999999999999775 667888999999999999877322 1 2344432
Q ss_pred CcccCCCccccCCCCceEEEEEeecChhHHHHHHH
Q 001703 775 GLDARHGAKSQDEEGRLRFYFQSFVSFNDASRTIM 809 (1024)
Q Consensus 775 ~~~~~~~~~~~~~~~~~~~~f~sf~~rd~~~~~l~ 809 (1024)
+..++.|.++ ..+++-....
T Consensus 73 --------------~~~~~~i~~i-~k~~~~~~~~ 92 (96)
T PF14470_consen 73 --------------NGEKIKIDNI-QKGDVKEFYE 92 (96)
T ss_pred --------------CCEEEEEEEc-CHHHHHHHHH
Confidence 2248888887 6666555443
No 262
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=94.61 E-value=0.29 Score=48.30 Aligned_cols=121 Identities=18% Similarity=0.264 Sum_probs=81.2
Q ss_pred cEEEEEEEEeecCC--C----CC--c--EEEEEECCeEEeeecccCCCCCeEeeEEEEEEecCC-------------CCe
Q 001703 4 TRLYVYVLQGQDLL--A----KD--S--YVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHNID-------------DEE 60 (1024)
Q Consensus 4 ~~L~V~V~~Ar~L~--~----~D--P--yv~v~l~~~~~rT~v~~~t~nP~WnE~f~f~v~~~~-------------~~~ 60 (1024)
..|++.|+.+|-.. . .+ . .+.+.+++++++|+.+..+.+|.|+|.|.|+++... ...
T Consensus 9 ~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~QRF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~~~p 88 (156)
T PF15627_consen 9 RYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRGQRFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLSISDP 88 (156)
T ss_pred eEEEEEEeCchhHhhhhhccCCCCceEEEEEEEecCceEecCCcccccCCCCCCcEEEEecccccccccchhHhhcCCCc
Confidence 45888999888655 1 12 2 334455799999999999999999999999987221 256
Q ss_pred EEEEEEecCCCCCCCCCCCCeeEEEEEeCccccccCCCCCCCEEEEeecCCCCCCCCccccEEEEEEEEEec
Q 001703 61 LVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTISLNGK 132 (1024)
Q Consensus 61 L~v~V~d~d~~~~f~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~~~~ 132 (1024)
|.+.|.-.| . .+...++|.-.+....+...+. ...++.++-...+....-..|-|.+++.+.|.
T Consensus 89 ihivli~~d---~--~~~~~Lv~s~~ldWR~vL~s~~---~~~~~~vEL~G~~~e~kv~~GiL~l~lELlP~ 152 (156)
T PF15627_consen 89 IHIVLIRTD---P--SGETTLVGSHFLDWRKVLCSGN---GSTSFTVELCGVGPESKVPVGILDLRLELLPN 152 (156)
T ss_pred eEEEEEEec---C--CCceEeeeeceehHHHHhccCC---CccceeEEEeccCCCCccceeEEEEEEEeecC
Confidence 777787777 2 2345799998888888776543 22245544111111112367888888888764
No 263
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=94.06 E-value=0.31 Score=49.58 Aligned_cols=102 Identities=16% Similarity=0.193 Sum_probs=66.9
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEE--CCEEE----eeecccCCCCCeEeEEEEEEeec---CCCCeEEEEEEecC
Q 001703 537 VLTVALVEGVNLASSEMTGLSDPYVVFTC--NGKTR----TSSVQLQTCDPQWHDILEFDAME---EPPSVLDVEVFDFD 607 (1024)
Q Consensus 537 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~--~~~~~----kT~~~~~t~nP~WnE~f~f~~~~---~~~~~L~v~V~D~d 607 (1024)
.++|+|+.+.++... ....+-||.+.+ |++.. .|+.+.-+.+|.|||.++|++.- +....|.|+||+..
T Consensus 9 ~f~i~i~~~~~~~~~--~~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~~ 86 (173)
T cd08693 9 KFSITLHKISNLNAA--ERTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYEVS 86 (173)
T ss_pred CEEEEEEEeccCccC--CCCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEEec
Confidence 689999999999862 234566766544 55543 55555545679999999998621 33458999999975
Q ss_pred CCCC----------------CCccceEEEEEcccccCCCccceEEEccccccccccceeEEEEEE
Q 001703 608 GPFD----------------QATSLGHAEINFLKHTSTELADMWVSLEGKLAQSAQSKVHLRIFL 656 (1024)
Q Consensus 608 ~~~~----------------~dd~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~g~l~l~~~~ 656 (1024)
. -. .+..||.+.++|-+... .-.+|...|.++.
T Consensus 87 ~-~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd~~~---------------~Lr~G~~~L~lW~ 135 (173)
T cd08693 87 K-KAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFDYKG---------------QLKTGDHTLYMWT 135 (173)
T ss_pred c-cccccccccccccccccCcceEEEEEeEEEEcccc---------------hhhcCCeEEEecC
Confidence 3 11 13567777777765221 1235777777764
No 264
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=93.99 E-value=1.3 Score=43.54 Aligned_cols=119 Identities=22% Similarity=0.343 Sum_probs=79.2
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCEE---Eeeec-ccCCCCCeEeEEEEEEeec---C-----CCCeEEEEE
Q 001703 536 WVLTVALVEGVNLASSEMTGLSDPYVVFTCNGKT---RTSSV-QLQTCDPQWHDILEFDAME---E-----PPSVLDVEV 603 (1024)
Q Consensus 536 ~~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~---~kT~~-~~~t~nP~WnE~f~f~~~~---~-----~~~~L~v~V 603 (1024)
..+.|++.+..+++.. ..--||....++.. .+|.. ...+-.-.|||.|.+.+.- . ....+.|.|
T Consensus 7 f~~~l~i~~l~~~p~~----~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~v 82 (143)
T PF10358_consen 7 FQFDLTIHELENLPSS----NGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKFSV 82 (143)
T ss_pred EEEEEEEEEeECcCCC----CCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEEE
Confidence 4678999999999872 23455556555443 34433 3345568999999998732 1 133789999
Q ss_pred EecCCCCCCCccceEEEEEcccccCC--CccceEEEccccccccccceeEEEEEEeccCC
Q 001703 604 FDFDGPFDQATSLGHAEINFLKHTST--ELADMWVSLEGKLAQSAQSKVHLRIFLENNNG 661 (1024)
Q Consensus 604 ~D~d~~~~~dd~lG~~~i~l~~l~~~--~~~~~w~~L~~~~~~~~~g~l~l~~~~~~~~~ 661 (1024)
+..+. -++...+|.+.|+|++.... .....-++|... ......|+|.+.+....+
T Consensus 83 ~~~~~-~~~k~~lG~~~inLaey~~~~~~~~~~~~~l~~~--~~~~a~L~isi~~~~~~~ 139 (143)
T PF10358_consen 83 FEVDG-SGKKKVLGKVSINLAEYANEDEEPITVRLLLKKC--KKSNATLSISISLSELRE 139 (143)
T ss_pred EEecC-CCccceEEEEEEEHHHhhCcCCCcEEEEEeCccC--CCCCcEEEEEEEEEECcc
Confidence 88753 13336899999999997664 455667788764 234567888887654443
No 265
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=93.88 E-value=0.45 Score=47.63 Aligned_cols=106 Identities=14% Similarity=0.253 Sum_probs=69.0
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEE--CCEE----EeeecccCCCCCeEeEEEEEEeec---CCCCeEEEEEEecC
Q 001703 537 VLTVALVEGVNLASSEMTGLSDPYVVFTC--NGKT----RTSSVQLQTCDPQWHDILEFDAME---EPPSVLDVEVFDFD 607 (1024)
Q Consensus 537 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~--~~~~----~kT~~~~~t~nP~WnE~f~f~~~~---~~~~~L~v~V~D~d 607 (1024)
.++|++....++...+ ....+-||.+.+ |++. ..|.......++.|||.++|++.- +....|.|+||+.+
T Consensus 9 ~~~i~i~~~~~~~~~~-~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~~ 87 (156)
T cd08380 9 NLRIKIHGITNINLLD-SEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAVS 87 (156)
T ss_pred CeEEEEEeeccccccC-CCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEEe
Confidence 5678888888877622 234566666644 4442 244444434689999999998622 33558999999987
Q ss_pred CCCC--CCccceEEEEEcccccCCCccceEEEccccccccccceeEEEEEEecc
Q 001703 608 GPFD--QATSLGHAEINFLKHTSTELADMWVSLEGKLAQSAQSKVHLRIFLENN 659 (1024)
Q Consensus 608 ~~~~--~dd~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~g~l~l~~~~~~~ 659 (1024)
. -. .+..||.+.++|-+... .| .+|...|.++....
T Consensus 88 ~-~~~~~~~~iG~~~~~lFd~~~--------~L-------~~G~~~l~lW~~~~ 125 (156)
T cd08380 88 E-PGSKKEVPLGWVNVPLFDYKG--------KL-------RQGMITLNLWPGKK 125 (156)
T ss_pred c-CCCCcceEEEEEeEEeEcccC--------cE-------ecCCEEEeccCCcc
Confidence 6 23 46789999999886321 12 25777777765433
No 266
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=93.46 E-value=0.71 Score=40.84 Aligned_cols=84 Identities=11% Similarity=0.154 Sum_probs=62.3
Q ss_pred CCCcEEEEEECCE-EEeeecccCCCCCeEeEEEEEEeecCCCCeEEEEEEecCCCCCCCccceEEEEEcccccCCCccce
Q 001703 556 LSDPYVVFTCNGK-TRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQATSLGHAEINFLKHTSTELADM 634 (1024)
Q Consensus 556 ~~DPyv~v~~~~~-~~kT~~~~~t~nP~WnE~f~f~~~~~~~~~L~v~V~D~d~~~~~dd~lG~~~i~l~~l~~~~~~~~ 634 (1024)
-++-.+++.++++ ...|..... .+..||+.|.+++ +...+|+|.||-.|- ..+.|-..+-|.+. .+..
T Consensus 8 ~~eV~avLklDn~~VgqT~Wk~~-s~q~WDQ~Fti~L--dRsRELEI~VywrD~----RslCav~~lrLEd~----~~~~ 76 (98)
T cd08687 8 CSEVSAVLKLDNTVVGQTQWKPK-SNQAWDQSFTLEL--ERSRELEIAVYWRDW----RSLCAVKFLKLEDE----RHEV 76 (98)
T ss_pred ccceEEEEEEcCeEEeecccccc-ccccccceeEEEe--ecccEEEEEEEEecc----hhhhhheeeEhhhh----cccc
Confidence 3688899999875 456665443 5788999999984 446799999998885 25778888888873 3345
Q ss_pred EEEccccccccccceeEEEEEE
Q 001703 635 WVSLEGKLAQSAQSKVHLRIFL 656 (1024)
Q Consensus 635 w~~L~~~~~~~~~g~l~l~~~~ 656 (1024)
-.+|++ +|.+...+++
T Consensus 77 ~~~lep------qg~l~~ev~f 92 (98)
T cd08687 77 QLDMEP------QLCLVAELTF 92 (98)
T ss_pred eecccc------ccEEEEEEEe
Confidence 567765 7888888776
No 267
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=93.41 E-value=0.53 Score=47.17 Aligned_cols=91 Identities=19% Similarity=0.352 Sum_probs=61.7
Q ss_pred CCCCcEEEEEE--CCEEE----eeecccCCCCCeEeEEEEEEeec---CCCCeEEEEEEecCCCCCCCccceEEEEEccc
Q 001703 555 GLSDPYVVFTC--NGKTR----TSSVQLQTCDPQWHDILEFDAME---EPPSVLDVEVFDFDGPFDQATSLGHAEINFLK 625 (1024)
Q Consensus 555 g~~DPyv~v~~--~~~~~----kT~~~~~t~nP~WnE~f~f~~~~---~~~~~L~v~V~D~d~~~~~dd~lG~~~i~l~~ 625 (1024)
..+|-||.+.+ +++.. .|+.+.-+..+.|||...|++.- +....|.|+|||.+. -++...+|.+.++|-+
T Consensus 28 ~~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~-~~~~~~vg~~~~~lFd 106 (159)
T cd08397 28 PNSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSG-TGKAVPFGGTTLSLFN 106 (159)
T ss_pred CCCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecC-CCCceEEEEEEEeeEC
Confidence 34677777755 44433 55555556678999999999732 335699999999886 3567789999999886
Q ss_pred ccCCCccceEEEccccccccccceeEEEEEEeccCC
Q 001703 626 HTSTELADMWVSLEGKLAQSAQSKVHLRIFLENNNG 661 (1024)
Q Consensus 626 l~~~~~~~~w~~L~~~~~~~~~g~l~l~~~~~~~~~ 661 (1024)
-. + .| .+|...|.++.....+
T Consensus 107 ~~-g-------~L-------r~G~~~l~lw~~~~~d 127 (159)
T cd08397 107 KD-G-------TL-------RRGRQKLRVWPDVEAD 127 (159)
T ss_pred CC-C-------cE-------ecCCEEEEEEeCCCCC
Confidence 32 1 12 2677777777554443
No 268
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=93.32 E-value=0.4 Score=48.04 Aligned_cols=88 Identities=18% Similarity=0.320 Sum_probs=61.0
Q ss_pred CcEEEEEEEEeecCC-----CCCcEEEEEE--CCeE----EeeecccCCCCCeEeeEEEEEEe---cCCCCeEEEEEEec
Q 001703 3 STRLYVYVLQGQDLL-----AKDSYVKVQI--GKHK----SKSRILKNNSNPVWNEEFVFRVH---NIDDEELVVSVFQH 68 (1024)
Q Consensus 3 ~~~L~V~V~~Ar~L~-----~~DPyv~v~l--~~~~----~rT~v~~~t~nP~WnE~f~f~v~---~~~~~~L~v~V~d~ 68 (1024)
+..++|++..+.++. ..+-||.+.+ +++. ..|.......++.|||...|.+. -+....|.++||+.
T Consensus 7 ~~~~~i~i~~~~~~~~~~~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~ 86 (156)
T cd08380 7 NFNLRIKIHGITNINLLDSEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAV 86 (156)
T ss_pred CCCeEEEEEeeccccccCCCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEE
Confidence 456888888888875 3455666655 4432 34444443478999999999965 46678999999998
Q ss_pred CCCCCCCCCCCCeeEEEEEeCcccc
Q 001703 69 NDDSGLFGSSGELMGRVRVPVSSIA 93 (1024)
Q Consensus 69 d~~~~f~~~~d~~lG~~~i~L~~l~ 93 (1024)
+... ...+..||.+.++|-+..
T Consensus 87 ~~~~---~~~~~~iG~~~~~lFd~~ 108 (156)
T cd08380 87 SEPG---SKKEVPLGWVNVPLFDYK 108 (156)
T ss_pred ecCC---CCcceEEEEEeEEeEccc
Confidence 7210 014579999999987754
No 269
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=92.77 E-value=1.1 Score=39.67 Aligned_cols=83 Identities=11% Similarity=0.210 Sum_probs=60.7
Q ss_pred CCcEEEEEECC-eEEeeecccCCCCCeEeeEEEEEEecCCCCeEEEEEEecCCCCCCCCCCCCeeEEEEEeCccccccCC
Q 001703 19 KDSYVKVQIGK-HKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDN 97 (1024)
Q Consensus 19 ~DPyv~v~l~~-~~~rT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~~~f~~~~d~~lG~~~i~L~~l~~~~~ 97 (1024)
++-.+.+.+.+ ...+|.-... .+..|++.|.+++ ...+.|.|.||-.| -....|-..+.|.+...
T Consensus 9 ~eV~avLklDn~~VgqT~Wk~~-s~q~WDQ~Fti~L--dRsRELEI~VywrD--------~RslCav~~lrLEd~~~--- 74 (98)
T cd08687 9 SEVSAVLKLDNTVVGQTQWKPK-SNQAWDQSFTLEL--ERSRELEIAVYWRD--------WRSLCAVKFLKLEDERH--- 74 (98)
T ss_pred cceEEEEEEcCeEEeecccccc-ccccccceeEEEe--ecccEEEEEEEEec--------chhhhhheeeEhhhhcc---
Confidence 56678888876 4577766654 5789999999999 68899999999988 23566777777877322
Q ss_pred CCCCCEEEEeecCCCCCCCCccccEEEEEEEE
Q 001703 98 HMLPPTWFSLETPKTRKFTNKDCGKILLTISL 129 (1024)
Q Consensus 98 ~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~ 129 (1024)
..-.+|+ +.|.+...+.|
T Consensus 75 ----~~~~~le----------pqg~l~~ev~f 92 (98)
T cd08687 75 ----EVQLDME----------PQLCLVAELTF 92 (98)
T ss_pred ----cceeccc----------cccEEEEEEEe
Confidence 1123443 67888888887
No 270
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=92.41 E-value=0.47 Score=47.54 Aligned_cols=70 Identities=11% Similarity=0.216 Sum_probs=53.2
Q ss_pred CCCcEEEEEE--CCeE----EeeecccCCCCCeEeeEEEEEEe---cCCCCeEEEEEEecCCCCCCCCCCCCeeEEEEEe
Q 001703 18 AKDSYVKVQI--GKHK----SKSRILKNNSNPVWNEEFVFRVH---NIDDEELVVSVFQHNDDSGLFGSSGELMGRVRVP 88 (1024)
Q Consensus 18 ~~DPyv~v~l--~~~~----~rT~v~~~t~nP~WnE~f~f~v~---~~~~~~L~v~V~d~d~~~~f~~~~d~~lG~~~i~ 88 (1024)
.+|-||.+++ ++.. .+|+.+.-+..+.|||...|.+. -+....|.|+||+.+ ..+....+|.+.++
T Consensus 29 ~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~-----~~~~~~~vg~~~~~ 103 (159)
T cd08397 29 NSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVS-----GTGKAVPFGGTTLS 103 (159)
T ss_pred CCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEec-----CCCCceEEEEEEEe
Confidence 5778888877 3332 46666666778999999999976 466789999999988 23456799999999
Q ss_pred Cccc
Q 001703 89 VSSI 92 (1024)
Q Consensus 89 L~~l 92 (1024)
|-+-
T Consensus 104 lFd~ 107 (159)
T cd08397 104 LFNK 107 (159)
T ss_pred eECC
Confidence 8664
No 271
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=92.09 E-value=0.74 Score=46.84 Aligned_cols=89 Identities=15% Similarity=0.188 Sum_probs=62.3
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCcEEEEEE--CCEEE----eeeccc----CCCCCeEeEEEEEEeec---CCCCeEEEE
Q 001703 536 WVLTVALVEGVNLASSEMTGLSDPYVVFTC--NGKTR----TSSVQL----QTCDPQWHDILEFDAME---EPPSVLDVE 602 (1024)
Q Consensus 536 ~~L~V~vi~a~~L~~~d~~g~~DPyv~v~~--~~~~~----kT~~~~----~t~nP~WnE~f~f~~~~---~~~~~L~v~ 602 (1024)
..+.|+|..+.+++........|-||.+.+ |++.. .|+... -...+.|||.++|++.- +....|.|+
T Consensus 8 ~~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~it 87 (171)
T cd04012 8 DLLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVLT 87 (171)
T ss_pred ccEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEEE
Confidence 368999999999998765456788888755 55543 443211 12357899999998721 234589999
Q ss_pred EEecCCCCC---------CCccceEEEEEccc
Q 001703 603 VFDFDGPFD---------QATSLGHAEINFLK 625 (1024)
Q Consensus 603 V~D~d~~~~---------~dd~lG~~~i~l~~ 625 (1024)
||+... -. .+..||.+.++|-+
T Consensus 88 l~~~~~-~~~~~~~~~~~~~~~lG~~~~~LFd 118 (171)
T cd04012 88 LYGTTS-SPDGGSNKQRMGPEELGWVSLPLFD 118 (171)
T ss_pred EEEEec-CCccccccccccceEEEEEeEeeEc
Confidence 999765 23 34688888888876
No 272
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=91.81 E-value=0.85 Score=46.40 Aligned_cols=92 Identities=20% Similarity=0.272 Sum_probs=62.4
Q ss_pred CCcEEEEEEEEeecCC------CCCcEEEEEE--CCeE----Eeeeccc--C--CCCCeEeeEEEEEEe---cCCCCeEE
Q 001703 2 VSTRLYVYVLQGQDLL------AKDSYVKVQI--GKHK----SKSRILK--N--NSNPVWNEEFVFRVH---NIDDEELV 62 (1024)
Q Consensus 2 ~~~~L~V~V~~Ar~L~------~~DPyv~v~l--~~~~----~rT~v~~--~--t~nP~WnE~f~f~v~---~~~~~~L~ 62 (1024)
.+..+.|+|..+.+++ ..|-||.+.+ |++. ..|+... + ...+.|||.+.|++. -+....|.
T Consensus 6 v~~~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~ 85 (171)
T cd04012 6 VTDLLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLV 85 (171)
T ss_pred ccccEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEE
Confidence 4567899999999999 3678888866 4432 3444221 1 336789999999965 46678999
Q ss_pred EEEEecCCCCCCC----CCCCCeeEEEEEeCcccc
Q 001703 63 VSVFQHNDDSGLF----GSSGELMGRVRVPVSSIA 93 (1024)
Q Consensus 63 v~V~d~d~~~~f~----~~~d~~lG~~~i~L~~l~ 93 (1024)
|+||+......-. ...+..||.+.++|-+..
T Consensus 86 itl~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~~ 120 (171)
T cd04012 86 LTLYGTTSSPDGGSNKQRMGPEELGWVSLPLFDFR 120 (171)
T ss_pred EEEEEEecCCccccccccccceEEEEEeEeeEcch
Confidence 9999977211000 003568999999886643
No 273
>PF14844 PH_BEACH: PH domain associated with Beige/BEACH; PDB: 1MI1_B 1T77_C.
Probab=91.70 E-value=0.11 Score=48.23 Aligned_cols=66 Identities=17% Similarity=0.239 Sum_probs=45.0
Q ss_pred cccceeeeeec-ccccccceeeeecEEEEEec---------------cCCCeEEEEEecccceeeEeccccccccCCCcE
Q 001703 703 LIKDFTCYLKR-KMPLQGRLFLSARIVGFYAN---------------LFGNKTKFFFLWEDIEDIQILSPSLATVGSPSL 766 (1024)
Q Consensus 703 l~~~~~c~~~~-~~~~~G~lyis~~~~cF~s~---------------~~g~~~~~~i~~~di~~i~k~~~~~~~~~~~~i 766 (1024)
++-.+.|.+-. .....|.|.++.+++.|..+ .-.......+|++||..|.+..--+ -.-||
T Consensus 2 i~~s~~c~~I~~~~~~~G~l~i~~~~i~F~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~I~~v~~RRyll---r~~Al 78 (106)
T PF14844_consen 2 ILLSVPCELITPLDSIPGTLIITKSSIYFIPNDNSSENKISSENPSISISKPKSKRWPLSDIKEVHKRRYLL---RDTAL 78 (106)
T ss_dssp -SEEEEEEEEETTEEEEEEEEE-SSEEEEEE--TTSHHHHCS-HHHHCC---TCEEEEGGGEEEEEEEEETT---EEEEE
T ss_pred EEEEEEEEEEEeeeeEEEEEEEeCCEEEEEECCcccccccccccccccccCCceEEEEHHHhHHHHHHHhcC---cceEE
Confidence 34567887654 44578999999999999977 2233555789999999999877221 22368
Q ss_pred EEEEe
Q 001703 767 VIILW 771 (1024)
Q Consensus 767 ~i~~~ 771 (1024)
+|++.
T Consensus 79 EiF~~ 83 (106)
T PF14844_consen 79 EIFFS 83 (106)
T ss_dssp EEEET
T ss_pred EEEEc
Confidence 88875
No 274
>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=89.11 E-value=0.84 Score=49.05 Aligned_cols=115 Identities=14% Similarity=0.097 Sum_probs=75.8
Q ss_pred CCCeEEEEEEEEeeCCCCCCC--CCCCCcEEEEEECCEE-EeeecccCCCCCeEeEEEEEEeecCCCCeEEEEEEecCCC
Q 001703 533 GDGWVLTVALVEGVNLASSEM--TGLSDPYVVFTCNGKT-RTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGP 609 (1024)
Q Consensus 533 ~~~~~L~V~vi~a~~L~~~d~--~g~~DPyv~v~~~~~~-~kT~~~~~t~nP~WnE~f~f~~~~~~~~~L~v~V~D~d~~ 609 (1024)
+-.|+|.+++++|++|.-... +-+-+-||++.++.+. -+|.+.....-=.|.|.|..++.. ...+.+-||.|+..
T Consensus 48 s~tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~drqh~aRt~vrs~~~~f~w~e~F~~Dvv~--~~vl~~lvySW~pq 125 (442)
T KOG1452|consen 48 SSTGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPDRQHPARTRVRSSGPGFAWAEDFKHDVVN--IEVLHYLVYSWPPQ 125 (442)
T ss_pred cccceEEEEEecccccccChhccCceeeeeeeeeecccCccccccccCCCCccchhhceeeccc--ceeeeEEEeecCch
Confidence 456899999999999975433 4457899999988653 466666666666789999988543 46889999999973
Q ss_pred CCCCccceEEEEEcccccCCC-ccceEEEccccccccccceeEEEEEE
Q 001703 610 FDQATSLGHAEINFLKHTSTE-LADMWVSLEGKLAQSAQSKVHLRIFL 656 (1024)
Q Consensus 610 ~~~dd~lG~~~i~l~~l~~~~-~~~~w~~L~~~~~~~~~g~l~l~~~~ 656 (1024)
.++.+.-..-|.+..+.... .+..-..|++ .|.+.+++-+
T Consensus 126 -~RHKLC~~g~l~~~~v~rqspd~~~Al~leP------rgq~~~r~~~ 166 (442)
T KOG1452|consen 126 -RRHKLCHLGLLEAFVVDRQSPDRVVALYLEP------RGQPPLRLPL 166 (442)
T ss_pred -hhccccccchhhhhhhhhcCCcceeeeeccc------CCCCceeccc
Confidence 55555444444444433322 2223344444 5667776654
No 275
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=88.85 E-value=3.5 Score=40.46 Aligned_cols=75 Identities=16% Similarity=0.298 Sum_probs=48.7
Q ss_pred eeecccCC-CCCeEeEEEEEEee---cCCCCeEEEEEEecCCCCCCC----ccceEEEEEcccccCCCccceEEEccccc
Q 001703 571 TSSVQLQT-CDPQWHDILEFDAM---EEPPSVLDVEVFDFDGPFDQA----TSLGHAEINFLKHTSTELADMWVSLEGKL 642 (1024)
Q Consensus 571 kT~~~~~t-~nP~WnE~f~f~~~---~~~~~~L~v~V~D~d~~~~~d----d~lG~~~i~l~~l~~~~~~~~w~~L~~~~ 642 (1024)
.|+...-+ .+|.|||.++|++. -+....|.|+||+.+. -... ..||.+.++|-+...
T Consensus 23 ~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~-~~~~~~~~~~lgw~n~~lFd~~~-------------- 87 (142)
T PF00792_consen 23 STSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDS-KKKSKKKKVPLGWVNLPLFDYRG-------------- 87 (142)
T ss_dssp E-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEEC-STTT--EEEEEEEEEEESB-TTS--------------
T ss_pred eccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecC-CCccccceeEEEEEEEEeECCCC--------------
Confidence 55555555 89999999999962 2345699999999886 3444 589999999887422
Q ss_pred cccccceeEEEEEEeccCC
Q 001703 643 AQSAQSKVHLRIFLENNNG 661 (1024)
Q Consensus 643 ~~~~~g~l~l~~~~~~~~~ 661 (1024)
.-.+|...|.++.....+
T Consensus 88 -~L~~G~~~L~lW~~~~~~ 105 (142)
T PF00792_consen 88 -QLRQGPQKLSLWPDEEPD 105 (142)
T ss_dssp -BBEEEEEEEE-EET-TTS
T ss_pred -cccCCCEEEEEEcCCCCc
Confidence 122677777776544443
No 276
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=88.39 E-value=3.6 Score=41.90 Aligned_cols=70 Identities=14% Similarity=0.113 Sum_probs=43.5
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEE--CCEEE---eeecccCCCCCeEeEEEEEEee-c--CCCCeEEEEEEecC
Q 001703 537 VLTVALVEGVNLASSEMTGLSDPYVVFTC--NGKTR---TSSVQLQTCDPQWHDILEFDAM-E--EPPSVLDVEVFDFD 607 (1024)
Q Consensus 537 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~--~~~~~---kT~~~~~t~nP~WnE~f~f~~~-~--~~~~~L~v~V~D~d 607 (1024)
.++|+|+.+.++.. +.....--||.+.+ |++.. +|+...-+.+|.|||.++|++. . +....|.|+||+..
T Consensus 11 ~friki~~~~~~~~-~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~ 88 (178)
T cd08399 11 KFRVKILGIDIPVL-PRNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGK 88 (178)
T ss_pred CEEEEEEeecccCc-CCCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEEEe
Confidence 56788888864332 21222234444422 44432 5666666778999999999872 2 33559999999964
No 277
>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=88.17 E-value=0.87 Score=48.93 Aligned_cols=109 Identities=17% Similarity=0.270 Sum_probs=73.5
Q ss_pred CCcEEEEEEEEeecCC--------CCCcEEEEEECCe-EEeeecccCCCCCeEeeEEEEEEecCCCCeEEEEEEecCCCC
Q 001703 2 VSTRLYVYVLQGQDLL--------AKDSYVKVQIGKH-KSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDS 72 (1024)
Q Consensus 2 ~~~~L~V~V~~Ar~L~--------~~DPyv~v~l~~~-~~rT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~~ 72 (1024)
..+.|.++++.+|+|. ..+-||.+....+ +.||.+.....-=.|.|+|..++ ..-..+.+-||.++++.
T Consensus 49 ~tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~drqh~aRt~vrs~~~~f~w~e~F~~Dv--v~~~vl~~lvySW~pq~ 126 (442)
T KOG1452|consen 49 STGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPDRQHPARTRVRSSGPGFAWAEDFKHDV--VNIEVLHYLVYSWPPQR 126 (442)
T ss_pred ccceEEEEEecccccccChhccCceeeeeeeeeecccCccccccccCCCCccchhhceeec--ccceeeeEEEeecCchh
Confidence 3688999999999998 4678999988654 47777776666778999999887 46677888999998432
Q ss_pred CCCCCCCC--eeEEEEEeCccccccCCCCCCCEEEEeecCCCCCCCCccccEEEEEEEEEe
Q 001703 73 GLFGSSGE--LMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTISLNG 131 (1024)
Q Consensus 73 ~f~~~~d~--~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~~~ 131 (1024)
++. ..| .+.+..+... ....-+-|. ..++|++.+.+.+..
T Consensus 127 -----RHKLC~~g--~l~~~~v~rq----spd~~~Al~--------lePrgq~~~r~~~~D 168 (442)
T KOG1452|consen 127 -----RHKLCHLG--LLEAFVVDRQ----SPDRVVALY--------LEPRGQPPLRLPLAD 168 (442)
T ss_pred -----hccccccc--hhhhhhhhhc----CCcceeeee--------cccCCCCceecccCC
Confidence 344 344 3333333332 112223333 346788888877754
No 278
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=88.07 E-value=2.7 Score=42.83 Aligned_cols=67 Identities=15% Similarity=0.253 Sum_probs=47.7
Q ss_pred CcEEEEEEEEeecCC---CCC--cEEEEEE--CCeE---EeeecccCCCCCeEeeEEEEEEe---cCCCCeEEEEEEecC
Q 001703 3 STRLYVYVLQGQDLL---AKD--SYVKVQI--GKHK---SKSRILKNNSNPVWNEEFVFRVH---NIDDEELVVSVFQHN 69 (1024)
Q Consensus 3 ~~~L~V~V~~Ar~L~---~~D--Pyv~v~l--~~~~---~rT~v~~~t~nP~WnE~f~f~v~---~~~~~~L~v~V~d~d 69 (1024)
+..++|+|+.+.++. ..+ -||++.+ |+.. .+|+...-+.+|.|||.+.|++. -+....|.|+||+..
T Consensus 9 ~~~friki~~~~~~~~~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~ 88 (178)
T cd08399 9 DRKFRVKILGIDIPVLPRNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGK 88 (178)
T ss_pred CCCEEEEEEeecccCcCCCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEEEe
Confidence 457899999987553 223 3555433 4432 46666666788999999999965 466789999999975
No 279
>cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG). CoxG has been shown, in Oligotropha carboxidovorans, to anchor the carbon monoxide (CO) dehydrogenase to the cytoplasmic membrane. The gene encoding CoxG is part of the Cox cluster (coxBCMSLDEFGHIK) located on a low-copy-number, circular, megaplasmid pHCG3. This cluster includes genes encoding subunits of CO dehydrogenase and several accessory components involved in the utilization of CO. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=87.78 E-value=27 Score=33.57 Aligned_cols=137 Identities=11% Similarity=0.076 Sum_probs=75.0
Q ss_pred ccccCCHHhHhhhccCChhHHHHHHHhCCcceeecccccCCCCceEEEEEEEEcccccCCCceecEEEEEeecCCCCcEE
Q 001703 858 AELPISVKALMEMFDGGKLEHQVMEKSGCHNYVTTPWDLVKPGVCERHLSYRFNRHVSIFGGEVTCTQQKSPLASGEGWI 937 (1024)
Q Consensus 858 ~~~~~~~~~~f~lf~~~~~~~~~~~~~~~~~i~~~~W~~~~~~~~~R~~sy~~n~~~~~~~~~~~~~Q~~~~~~~~~~~v 937 (1024)
..+++|++++|+++.|.+-+.+++-... ++. +. +++...=.+.+. +++.+...+..=......+...++
T Consensus 7 ~~i~a~~e~v~~~l~D~~~~~~w~p~~~--~~~---~~--~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 75 (144)
T cd05018 7 FRIPAPPEEVWAALNDPEVLARCIPGCE--SLE---KI--GPNEYEATVKLK----VGPVKGTFKGKVELSDLDPPESYT 75 (144)
T ss_pred EEecCCHHHHHHHhcCHHHHHhhccchh--hcc---cc--CCCeEEEEEEEE----EccEEEEEEEEEEEEecCCCcEEE
Confidence 4689999999999988776655553322 111 11 112111112222 233322222111122222334455
Q ss_pred EEEEEecCCCCCCCceEEEEEEEEEecCCCCCccEEEEEEEEEEecccchhhhhhhhhHHhHHHHHHHHHHHHHHHH
Q 001703 938 VNEVMSLHDVPFDDHFRVHFRYEIEKSPLAHNACKCAIYIGISWLKSTKFQQRITQNITEKFTHRLKEMIELVEREI 1014 (1024)
Q Consensus 938 v~~~~~~~dVPygd~F~v~~r~~i~~~~~~~~~c~l~v~~~V~f~Kst~~K~~Ie~~~~~g~~~~~~~~~~~~~~~i 1014 (1024)
+.-... +-+..+.....|.|+..+ ++|+|.....+++.. .++.+...-.....++....+++-+++.+
T Consensus 76 ~~~~~~----~~~~~~~~~~~~~l~~~~---~gT~v~~~~~~~~~g--~l~~l~~~~~~~~~~~~~~~~~~~l~~~~ 143 (144)
T cd05018 76 ITGEGK----GGAGFVKGTARVTLEPDG---GGTRLTYTADAQVGG--KLAQLGSRLIDGAARKLINQFFENLASKI 143 (144)
T ss_pred EEEEEc----CCCceEEEEEEEEEEecC---CcEEEEEEEEEEEcc--ChhhhCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 553222 225567899999999874 679999999888754 34555555555555566666666666554
No 280
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=87.21 E-value=3 Score=40.97 Aligned_cols=56 Identities=16% Similarity=0.345 Sum_probs=41.1
Q ss_pred eeecccCC-CCCeEeeEEEEEEe---cCCCCeEEEEEEecCCCCCCCCCCC----CeeEEEEEeCcccc
Q 001703 33 KSRILKNN-SNPVWNEEFVFRVH---NIDDEELVVSVFQHNDDSGLFGSSG----ELMGRVRVPVSSIA 93 (1024)
Q Consensus 33 rT~v~~~t-~nP~WnE~f~f~v~---~~~~~~L~v~V~d~d~~~~f~~~~d----~~lG~~~i~L~~l~ 93 (1024)
.|....-+ .+|.|||.+.|.+. -+....|.|+||..+. .... ..||.+.++|-+..
T Consensus 23 ~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~-----~~~~~~~~~~lgw~n~~lFd~~ 86 (142)
T PF00792_consen 23 STSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDS-----KKKSKKKKVPLGWVNLPLFDYR 86 (142)
T ss_dssp E-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEEC-----STTT--EEEEEEEEEEESB-TT
T ss_pred eccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecC-----CCccccceeEEEEEEEEeECCC
Confidence 56666655 79999999999976 4677899999999882 2233 69999999987664
No 281
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=86.53 E-value=15 Score=35.79 Aligned_cols=116 Identities=22% Similarity=0.361 Sum_probs=74.4
Q ss_pred EEEEEEEEeecCCCCCcEEEEEE--CCe---EEeeeccc-CCCCCeEeeEEEEEEe---c-----CCCCeEEEEEEecCC
Q 001703 5 RLYVYVLQGQDLLAKDSYVKVQI--GKH---KSKSRILK-NNSNPVWNEEFVFRVH---N-----IDDEELVVSVFQHND 70 (1024)
Q Consensus 5 ~L~V~V~~Ar~L~~~DPyv~v~l--~~~---~~rT~v~~-~t~nP~WnE~f~f~v~---~-----~~~~~L~v~V~d~d~ 70 (1024)
.+.++|.+..+++..+..+.|.+ +.. ...|.... .+..-.|||+|.+.+. + .....+.|.|+...+
T Consensus 8 ~~~l~i~~l~~~p~~~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~v~~~~~ 87 (143)
T PF10358_consen 8 QFDLTIHELENLPSSNGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKFSVFEVDG 87 (143)
T ss_pred EEEEEEEEeECcCCCCCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEEEEEecC
Confidence 57889999999985555555555 333 23343332 3556789999999865 1 223568899988751
Q ss_pred CCCCCCCCCCeeEEEEEeCccccccCCCCCCCEEEEeecCCCCCCCCccccEEEEEEEEEec
Q 001703 71 DSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTISLNGK 132 (1024)
Q Consensus 71 ~~~f~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~~~~ 132 (1024)
.++...+|.+.|+|+++..... .....-++|... ......|.|++.+...
T Consensus 88 -----~~~k~~lG~~~inLaey~~~~~-~~~~~~~~l~~~------~~~~a~L~isi~~~~~ 137 (143)
T PF10358_consen 88 -----SGKKKVLGKVSINLAEYANEDE-EPITVRLLLKKC------KKSNATLSISISLSEL 137 (143)
T ss_pred -----CCccceEEEEEEEHHHhhCcCC-CcEEEEEeCccC------CCCCcEEEEEEEEEEC
Confidence 1233699999999999887421 123334555521 2356778888888654
No 282
>PF10698 DUF2505: Protein of unknown function (DUF2505); InterPro: IPR019639 This entry represents proteins found Actinobacteria and Proteobacteria. The function is not known.
Probab=84.33 E-value=47 Score=33.20 Aligned_cols=148 Identities=16% Similarity=0.213 Sum_probs=94.2
Q ss_pred eeEEecChhhhcccccCCCchhHHHHHHHhCccceeeCCCccCCCCCCeeEEEEEEEeccCc-------cc-eeeEEEEE
Q 001703 256 DQLYQVSPCDLNTFLFAPDSQFRKDLAELQGTKDVQEGPWEWKSGEMTCLTRAVSYMKAATK-------LV-KAVKATEQ 327 (1024)
Q Consensus 256 d~~~~~~~~~l~~llf~~~s~f~~~~~~~~~~~~~~~~pw~~~~~~~~~~~R~~~y~~~~~~-------~~-k~~~~~e~ 327 (1024)
...|+++++++++++.. ..|++..+................. ++....+.-..|... ++ ..+..+++
T Consensus 4 ~~~~~~~~~~v~~~~~d--~~y~~~r~~~~g~~~~~~~~~~~~~---~g~~v~~~~~v~~~~lP~~~~k~v~~~l~v~~~ 78 (159)
T PF10698_consen 4 SVEYPAPVERVWAAFTD--EDYWEARCAALGADNAEVESFEVDG---DGVRVTVRQTVPADKLPSAARKFVGGDLRVTRT 78 (159)
T ss_pred EEEcCCCHHHHHHHHcC--HHHHHHHHHHcCCCCceEEEEEEcC---CeEEEEEEEecChhhCCHHHHHhcCCCeEEEEE
Confidence 35799999999999975 5788887766555333344332222 233333333344322 22 34666777
Q ss_pred EEEEeeCCCeEEEEEeeeCCCCCCCCeEEEEEEEEeecCCCCCCCCCceeEEEEEEEEEeeeeceecccccchHhhHHHH
Q 001703 328 QTYLKANGQEFAILVTVSTPDVPYGNTFNVQLLYKIIPGPELSSGEDSSHLIISWGIDFHQSTMMRGMIEGGARQGLKES 407 (1024)
Q Consensus 328 ~~~~~~~~~~~~v~~~~~tpdvp~g~~F~v~~~y~i~~~p~~~~~~~~~~l~i~~~i~~~~s~~~k~~iek~~~~g~~~~ 407 (1024)
++.-..++..+....+...+++| ..+.-.+.+.+ ....|++.+...++-+- .++-|.||+..-..+...
T Consensus 79 e~w~~~~~g~~~g~~~~~~~G~P----~~~~G~~~L~~------~~~gt~~~~~g~v~v~V-PlvGgkiE~~v~~~~~~~ 147 (159)
T PF10698_consen 79 ETWTPLDDGRRTGTFTVSIPGAP----VSISGTMRLRP------DGGGTRLTVEGEVKVKV-PLVGGKIEKAVAENLRKL 147 (159)
T ss_pred EEEecCCCCeEEEEEEEEecCce----EEEEEEEEEec------CCCCEEEEEEEEEEEEE-ccccHHHHHHHHHHHHHH
Confidence 77744345556555566666665 56677777773 45678777777665443 368899999999999888
Q ss_pred HHHHHHHHHhhc
Q 001703 408 FEQFANLLAQNL 419 (1024)
Q Consensus 408 ~~~~~~~l~~~~ 419 (1024)
++.-.++..+|+
T Consensus 148 ~~~e~~~~~~wl 159 (159)
T PF10698_consen 148 LEAEQEFTAEWL 159 (159)
T ss_pred HHHHHHHHHhhC
Confidence 887777766653
No 283
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=83.40 E-value=5 Score=36.82 Aligned_cols=65 Identities=17% Similarity=0.311 Sum_probs=46.8
Q ss_pred EEEEEEEEeecCC------CCCcEEEEEE--CCeE----EeeecccCCCCCeEeeEEEEEEe---cCCCCeEEEEEEecC
Q 001703 5 RLYVYVLQGQDLL------AKDSYVKVQI--GKHK----SKSRILKNNSNPVWNEEFVFRVH---NIDDEELVVSVFQHN 69 (1024)
Q Consensus 5 ~L~V~V~~Ar~L~------~~DPyv~v~l--~~~~----~rT~v~~~t~nP~WnE~f~f~v~---~~~~~~L~v~V~d~d 69 (1024)
.+.+.+..+.++. .++-||.+.+ |+.. ..|+.+.-...+.|||...|++. -+....|.++||+..
T Consensus 12 ~~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~ 91 (100)
T smart00142 12 NLVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEVK 91 (100)
T ss_pred ceEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEee
Confidence 3667777777776 2377888866 4432 35665555667999999999865 466789999999866
No 284
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=82.68 E-value=6.5 Score=36.07 Aligned_cols=71 Identities=17% Similarity=0.229 Sum_probs=45.8
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEE--CCEEE----eeecccCCCCCeEeEEEEEEee---cCCCCeEEEEEEecCC
Q 001703 538 LTVALVEGVNLASSEMTGLSDPYVVFTC--NGKTR----TSSVQLQTCDPQWHDILEFDAM---EEPPSVLDVEVFDFDG 608 (1024)
Q Consensus 538 L~V~vi~a~~L~~~d~~g~~DPyv~v~~--~~~~~----kT~~~~~t~nP~WnE~f~f~~~---~~~~~~L~v~V~D~d~ 608 (1024)
+.+.+....+.........+|-||.+.+ |++.. .|+.+.-...+.|||..+|++. -+....|.|+||+...
T Consensus 13 ~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~~ 92 (100)
T smart00142 13 LVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEVKN 92 (100)
T ss_pred eEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEeeC
Confidence 4566666666655433223578888755 55533 4554554566999999999862 1335589999998653
No 285
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=82.25 E-value=6.2 Score=40.64 Aligned_cols=58 Identities=16% Similarity=0.208 Sum_probs=33.8
Q ss_pred EEEeeecccCCCCCeEeEEEEEEeecCC--CCeEEEEEEecCCCCCCC--ccceEEEEEccc
Q 001703 568 KTRTSSVQLQTCDPQWHDILEFDAMEEP--PSVLDVEVFDFDGPFDQA--TSLGHAEINFLK 625 (1024)
Q Consensus 568 ~~~kT~~~~~t~nP~WnE~f~f~~~~~~--~~~L~v~V~D~d~~~~~d--d~lG~~~i~l~~ 625 (1024)
..+.|.+..++.+|.|+|+|.+.+..+. ...|.|++++....-+++ ..+|-+.++|-+
T Consensus 59 ~~~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 59 TSYYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD 120 (184)
T ss_dssp S-EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred eEEEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence 3467888889999999999999975443 458999999976411111 578888888876
No 286
>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=81.96 E-value=42 Score=34.56 Aligned_cols=142 Identities=8% Similarity=-0.017 Sum_probs=75.8
Q ss_pred cccccCCHHhHhhhccCChhHHHHHHHhCCcceeecccccCCCCceEEEEEEEE-cccccCCCc-eecEEEEEeecCCCC
Q 001703 857 NAELPISVKALMEMFDGGKLEHQVMEKSGCHNYVTTPWDLVKPGVCERHLSYRF-NRHVSIFGG-EVTCTQQKSPLASGE 934 (1024)
Q Consensus 857 ~~~~~~~~~~~f~lf~~~~~~~~~~~~~~~~~i~~~~W~~~~~~~~~R~~sy~~-n~~~~~~~~-~~~~~Q~~~~~~~~~ 934 (1024)
..+++++++++++++.+.+...++..... +..+-. ....+ ..+.|.. ..| .|... ..+-........++.
T Consensus 46 ~~~i~~s~e~v~~vi~d~e~~~~w~~~~~--~~~vie--~~~~~---~~i~~~~~~~p-~pvs~Rdfv~~~~~~~~~~~~ 117 (195)
T cd08876 46 VAEVDASIEAFLALLRDTESYPQWMPNCK--ESRVLK--RTDDN---ERSVYTVIDLP-WPVKDRDMVLRSTTEQDADDG 117 (195)
T ss_pred EEEEeCCHHHHHHHHhhhHhHHHHHhhcc--eEEEee--cCCCC---cEEEEEEEecc-cccCCceEEEEEEEEEcCCCC
Confidence 34588999999998877666666655432 222211 11111 2334432 222 11111 222222222222234
Q ss_pred cEEEEEEEecCCCCCCC----ceEEEEEEEEEecCCCCCccEEEEEEEEEEecccchhhhhhhhhHHhHHHHHHHHHHHH
Q 001703 935 GWIVNEVMSLHDVPFDD----HFRVHFRYEIEKSPLAHNACKCAIYIGISWLKSTKFQQRITQNITEKFTHRLKEMIELV 1010 (1024)
Q Consensus 935 ~~vv~~~~~~~dVPygd----~F~v~~r~~i~~~~~~~~~c~l~v~~~V~f~Kst~~K~~Ie~~~~~g~~~~~~~~~~~~ 1010 (1024)
.+++......+++|-.. .+.....|.|++.+ +++|+|.....+++ |+.+-+.+|...+..... .+++.+
T Consensus 118 ~~~i~~~s~~~~~P~~~~~vR~~~~~~~~~i~~~~--~~~t~vt~~~~~dp-~g~iP~~lv~~~~~~~~~----~~l~~l 190 (195)
T cd08876 118 SVTITLEAAPEALPEQKGYVRIKTVEGQWTFTPLG--NGKTRVTYQAYADP-GGSIPGWLANAFAKDAPY----NTLENL 190 (195)
T ss_pred EEEEEeecCCccCCCCCCeEEceeceeeEEEEECC--CCeEEEEEEEEeCC-CCCCCHHHHHHHHHHHHH----HHHHHH
Confidence 45555333323356432 25666789999987 57899999999999 455566666666554333 444444
Q ss_pred HHH
Q 001703 1011 ERE 1013 (1024)
Q Consensus 1011 ~~~ 1013 (1024)
++.
T Consensus 191 ~~~ 193 (195)
T cd08876 191 RKQ 193 (195)
T ss_pred HHh
Confidence 444
No 287
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=80.67 E-value=5.1 Score=41.28 Aligned_cols=58 Identities=16% Similarity=0.298 Sum_probs=34.7
Q ss_pred EeeecccCCCCCeEeeEEEEEEe--cCCCCeEEEEEEecCCCCCCCCCCCCeeEEEEEeCcc
Q 001703 32 SKSRILKNNSNPVWNEEFVFRVH--NIDDEELVVSVFQHNDDSGLFGSSGELMGRVRVPVSS 91 (1024)
Q Consensus 32 ~rT~v~~~t~nP~WnE~f~f~v~--~~~~~~L~v~V~d~d~~~~f~~~~d~~lG~~~i~L~~ 91 (1024)
..|.+...+.+|.|+|+|.+.++ ......|.|++++...... ..+...+|-+.+||-+
T Consensus 61 ~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~--~~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 61 YYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKES--KEKSKPFGYAFLPLMD 120 (184)
T ss_dssp EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSS--S-SS-EEEEEEEESB-
T ss_pred EEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccc--cCccceeEEEEEEeee
Confidence 67888888899999999999998 3446789999999772110 0112688998888877
No 288
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=76.39 E-value=16 Score=37.68 Aligned_cols=57 Identities=12% Similarity=0.171 Sum_probs=40.2
Q ss_pred EEEeeecccCCCCCeEeEEEEEEeecC--CCCeEEEEEEecCCCCCCC---ccceEEEEEcc
Q 001703 568 KTRTSSVQLQTCDPQWHDILEFDAMEE--PPSVLDVEVFDFDGPFDQA---TSLGHAEINFL 624 (1024)
Q Consensus 568 ~~~kT~~~~~t~nP~WnE~f~f~~~~~--~~~~L~v~V~D~d~~~~~d---d~lG~~~i~l~ 624 (1024)
..++|-+...+.+|.|+|++.+.+..+ ....|.|++++.-..-.+| ..+|-+.++|-
T Consensus 53 se~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~ 114 (196)
T cd08694 53 DEYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLM 114 (196)
T ss_pred eeEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEeee
Confidence 467888889999999999999997443 4568999998754200122 35666666664
No 289
>PF11605 Vps36_ESCRT-II: Vacuolar protein sorting protein 36 Vps36; InterPro: IPR021648 Vps36 is a subunit of ESCRT-II, a protein involved in driving protein sorting from endosomes to lysosomes. The GLUE domain of Vps36 allows for a tight interaction to occur between the protein and Vps28, a subunit of ESCRT-I. This interaction is critical for ubiquitinated cargo progression from early to late endosomes []. ; PDB: 2HTH_B 2DX5_A 2CAY_B.
Probab=75.88 E-value=5.1 Score=35.89 Aligned_cols=51 Identities=22% Similarity=0.292 Sum_probs=35.3
Q ss_pred ccceeeeecEEEEEeccCCCeEEEEEecccceeeEeccccccccCCCcEEEEE
Q 001703 718 QGRLFLSARIVGFYANLFGNKTKFFFLWEDIEDIQILSPSLATVGSPSLVIIL 770 (1024)
Q Consensus 718 ~G~lyis~~~~cF~s~~~g~~~~~~i~~~di~~i~k~~~~~~~~~~~~i~i~~ 770 (1024)
.|++|+|.+.|||.-+.......+.||+.+|..++....-+ --+|-|.+.+
T Consensus 37 ~G~l~LTsHRliw~d~~~~~~~s~~l~L~~i~~~e~~~gf~--~sSpKI~l~l 87 (89)
T PF11605_consen 37 NGRLYLTSHRLIWVDDSDPSKHSIALPLSLISHIEYSAGFL--KSSPKIILHL 87 (89)
T ss_dssp CEEEEEESSEEEEEESSGHCHH-EEEEGGGEEEEEEE-STT--SSS-EEEEEE
T ss_pred CCEEEEEeeEEEEEcCCCCceeEEEEEchHeEEEEEEcccc--CCCCeEEEEe
Confidence 59999999999997665444446999999999997766433 1235565554
No 290
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=75.58 E-value=10 Score=38.98 Aligned_cols=39 Identities=21% Similarity=0.382 Sum_probs=33.6
Q ss_pred EEeeecccCCCCCeEeeEEEEEEe--cCCCCeEEEEEEecC
Q 001703 31 KSKSRILKNNSNPVWNEEFVFRVH--NIDDEELVVSVFQHN 69 (1024)
Q Consensus 31 ~~rT~v~~~t~nP~WnE~f~f~v~--~~~~~~L~v~V~d~d 69 (1024)
..+|.+...+.+|.|+|++.+.++ ......|.|++++..
T Consensus 54 e~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S 94 (189)
T cd08695 54 EYRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCS 94 (189)
T ss_pred eEEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEee
Confidence 478999999999999999999998 456788999998866
No 291
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=75.39 E-value=11 Score=38.91 Aligned_cols=39 Identities=21% Similarity=0.340 Sum_probs=33.7
Q ss_pred EEeeecccCCCCCeEeeEEEEEEe--cCCCCeEEEEEEecC
Q 001703 31 KSKSRILKNNSNPVWNEEFVFRVH--NIDDEELVVSVFQHN 69 (1024)
Q Consensus 31 ~~rT~v~~~t~nP~WnE~f~f~v~--~~~~~~L~v~V~d~d 69 (1024)
..+|.+...+.+|.|+|++.+.++ ......|.|++++..
T Consensus 54 e~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S 94 (196)
T cd08694 54 EYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRS 94 (196)
T ss_pred eEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeec
Confidence 478888888999999999999988 456789999998865
No 292
>PTZ00447 apical membrane antigen 1-like protein; Provisional
Probab=73.88 E-value=37 Score=37.45 Aligned_cols=111 Identities=14% Similarity=0.219 Sum_probs=76.0
Q ss_pred EEEEEEEeecCC-CCCcEEEEEECCeEEeeecccCCCCCeEe--eEEEEEEecCCCCeEEEEEEecCCCCCCCCCCCCee
Q 001703 6 LYVYVLQGQDLL-AKDSYVKVQIGKHKSKSRILKNNSNPVWN--EEFVFRVHNIDDEELVVSVFQHNDDSGLFGSSGELM 82 (1024)
Q Consensus 6 L~V~V~~Ar~L~-~~DPyv~v~l~~~~~rT~v~~~t~nP~Wn--E~f~f~v~~~~~~~L~v~V~d~d~~~~f~~~~d~~l 82 (1024)
|.|.|.+--++. ...-|+.+..|....+|..+.-+..-.-+ |.....+ ...+.+|++.||-.. +-+..-|
T Consensus 60 LLVeI~EI~~i~k~khiyIef~~Gr~d~TT~~IpTsKK~RI~IqqRV~IkI-RQcDnTLkI~lfKKk------Lvkk~hI 132 (508)
T PTZ00447 60 LLVKINEIFNINKYKHIYIIFSTDKYDFTTDEIPTNKKNRIHIDQRVDIKI-RQCDETLRVDLFTTK------LTKKVHI 132 (508)
T ss_pred EEEEehhhhccccceeEEEEEEcCceEEEccccccCcCceEEEeeeeeeee-eecCceEEEEEEecc------ccceeEE
Confidence 556666666666 67789999999888888665443333333 3333344 577889999999877 5577899
Q ss_pred EEEEEeCcc-ccccCCCCCCCEEEEeecCCCCCCCCccccEEEEEEEEEe
Q 001703 83 GRVRVPVSS-IAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTISLNG 131 (1024)
Q Consensus 83 G~~~i~L~~-l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~~~ 131 (1024)
|++.+.+.. +... .-+..+||.+... +...++|.||+.-..
T Consensus 133 gdI~InIn~dIIdk--~FPKnkWy~c~kD------Gq~~cRIqLSFhKL~ 174 (508)
T PTZ00447 133 GQIKIDINASVISK--SFPKNEWFVCFKD------GQEICKVQMSFYKIQ 174 (508)
T ss_pred EEEEecccHHHHhc--cCCccceEEEecC------CceeeeEEEEehhhh
Confidence 999998754 3332 3467899999722 346788888876544
No 293
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]
Probab=73.11 E-value=5.2 Score=49.59 Aligned_cols=99 Identities=15% Similarity=0.197 Sum_probs=76.7
Q ss_pred CCcEEEEEECCE-EEeeecccCC-CCCeEeEEEEEEeecCCCCeEEEEEEecCCCCCCCccceEEEEEcccccCCCccce
Q 001703 557 SDPYVVFTCNGK-TRTSSVQLQT-CDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQATSLGHAEINFLKHTSTELADM 634 (1024)
Q Consensus 557 ~DPyv~v~~~~~-~~kT~~~~~t-~nP~WnE~f~f~~~~~~~~~L~v~V~D~d~~~~~dd~lG~~~i~l~~l~~~~~~~~ 634 (1024)
.++|+.+.+... ..+|....+. .+|.|.+.|+.. .......+.+.|-+.+. ++....+|.+.+++..+..+.....
T Consensus 138 ~e~Ylt~~l~~~~~~~t~~~~~f~e~s~~~f~~~~~-~~h~~g~v~~~~~~~~~-~G~s~~w~~v~~s~~~~~~~~~~~~ 215 (887)
T KOG1329|consen 138 LENYLTVVLHKARYRRTHVIYEFLENSRWSFSFDIG-FAHKAGYVIFRVKGARV-PGWSKRWGRVKISFLQYCSGHRIGG 215 (887)
T ss_pred ccchheeeechhhhhchhhhhcccccchhhhhcccc-ccccccEEEEeecCCcc-ccceeEEEEeccchhhhhccccccc
Confidence 699999999864 4577777676 799999999887 67778899999999887 5757899999999999999888999
Q ss_pred EEEcccccccccc--ceeEEEEEEe
Q 001703 635 WVSLEGKLAQSAQ--SKVHLRIFLE 657 (1024)
Q Consensus 635 w~~L~~~~~~~~~--g~l~l~~~~~ 657 (1024)
|+++....+.+.+ ..+++++.+.
T Consensus 216 ~~~Il~~d~~~~~~~~~~~~~~~~~ 240 (887)
T KOG1329|consen 216 WFPILDNDGKPHQKGSNESLRLGFT 240 (887)
T ss_pred eeeeeccCCccccCCcccceEEeeE
Confidence 9998664333322 3445545433
No 294
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=72.11 E-value=64 Score=32.67 Aligned_cols=84 Identities=19% Similarity=0.314 Sum_probs=59.3
Q ss_pred CCCcEEEEEECCeE-EeeecccC--CCCCeEeeEEEEEEecCCCCeEEEEEEecCCCCCCCCCCCCeeEEEEEeCccccc
Q 001703 18 AKDSYVKVQIGKHK-SKSRILKN--NSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAA 94 (1024)
Q Consensus 18 ~~DPyv~v~l~~~~-~rT~v~~~--t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~~~f~~~~d~~lG~~~i~L~~l~~ 94 (1024)
...-|++|.++++. .+|+...- ...-.|||.|.+.+. .....|.++||... ...+..|+++.+|+-....
T Consensus 36 ~~~~~ikl~~N~k~V~~T~~~~l~~dF~v~f~~~f~v~i~-~~Pesi~l~i~E~~------~~~~~~la~v~vpvP~~~~ 108 (168)
T PF15625_consen 36 KTRYYIKLFFNDKEVSRTRSRPLWSDFRVHFNEIFNVQIT-RWPESIKLEIYEKS------GLSDRLLAEVFVPVPGSTV 108 (168)
T ss_pred heeEEEEEEECCEEEEeeeeEecCCCeEEeccCEEEEEEe-cCCCEEEEEEEEcc------CccceEEEEEEeeCCCCcc
Confidence 45679999997754 66665543 344567899999984 58889999999988 2578999999999877654
Q ss_pred cCCCC-CCCEEEEee
Q 001703 95 EDNHM-LPPTWFSLE 108 (1024)
Q Consensus 95 ~~~~~-~~~~W~~L~ 108 (1024)
..... ....|+...
T Consensus 109 ~~~~~~~~~~~~eFs 123 (168)
T PF15625_consen 109 HTSTDNVPLEEYEFS 123 (168)
T ss_pred cccccCCceEeEEEc
Confidence 31111 145566654
No 295
>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=69.76 E-value=1.6 Score=52.49 Aligned_cols=97 Identities=11% Similarity=0.106 Sum_probs=68.9
Q ss_pred CCCcEEEEEECCE-EEeeecccCCCCCeEeEEEEEEeecCCCCeEEEEEEecCCCCCCCccceEEEEEcccccC-CCccc
Q 001703 556 LSDPYVVFTCNGK-TRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQATSLGHAEINFLKHTS-TELAD 633 (1024)
Q Consensus 556 ~~DPyv~v~~~~~-~~kT~~~~~t~nP~WnE~f~f~~~~~~~~~L~v~V~D~d~~~~~dd~lG~~~i~l~~l~~-~~~~~ 633 (1024)
.-|||+-|.+.-. ...+.+.+.+..|.|+++|..++. ....+.|.|+.... ...+.+..++.+..+++.. .....
T Consensus 27 al~~y~~v~vk~~~~~~~~~~~~~~~~~~~~~F~~~v~--~~~~~~i~v~~~~~-~~~~~~~a~~~~~~e~~k~~~~~~~ 103 (694)
T KOG0694|consen 27 ALQPYLAVELKVKQGAENMTKVELRIPELRETFHVEVV--AGGAKNIIVLLKSP-DPKALSEAQLSLQEESQKLLALEQR 103 (694)
T ss_pred hhhhhheeccceeecccccCCCCCCCchhhhheeeeee--cCCceEEEEEecCC-cchhhHHHhHHHHHHHHHHHhhhhh
Confidence 4589998888643 335566888999999999999943 34678888887653 4556666666666665543 23456
Q ss_pred eEEEccccccccccceeEEEEEEeccCC
Q 001703 634 MWVSLEGKLAQSAQSKVHLRIFLENNNG 661 (1024)
Q Consensus 634 ~w~~L~~~~~~~~~g~l~l~~~~~~~~~ 661 (1024)
.|..++. .|++++.+.+.++..
T Consensus 104 ~w~~~~~------~g~~~~~~~~~~~~~ 125 (694)
T KOG0694|consen 104 LWVLIEE------LGTLLKPAALTGTLE 125 (694)
T ss_pred hcccccc------ccceeeeecccCcCC
Confidence 7999875 688888888776655
No 296
>cd07821 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins. The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate
Probab=69.03 E-value=1e+02 Score=29.01 Aligned_cols=104 Identities=5% Similarity=-0.012 Sum_probs=50.3
Q ss_pred cccccCCHHhHhhhccCChhHHHHHHHhCCcceeecccccCC-CCceEEEEEEEEcccccCCCceecEEEEEeecCCC-C
Q 001703 857 NAELPISVKALMEMFDGGKLEHQVMEKSGCHNYVTTPWDLVK-PGVCERHLSYRFNRHVSIFGGEVTCTQQKSPLASG-E 934 (1024)
Q Consensus 857 ~~~~~~~~~~~f~lf~~~~~~~~~~~~~~~~~i~~~~W~~~~-~~~~~R~~sy~~n~~~~~~~~~~~~~Q~~~~~~~~-~ 934 (1024)
+.++++|++.+|+++.+..-+.+++... ..+. +.... ..+..|.+.+. .+ .. ..+......+. .
T Consensus 6 ~~~i~a~~~~V~~~l~d~~~~~~w~~~~--~~~~---~~~~~~~~g~~~~~~~~----~g---~~--~~~~i~~~~~~~~ 71 (140)
T cd07821 6 SVTIDAPADKVWALLSDFGGLHKWHPAV--ASCE---LEGGGPGVGAVRTVTLK----DG---GT--VRERLLALDDAER 71 (140)
T ss_pred EEEECCCHHHHHHHHhCcCchhhhccCc--ceEE---eecCCCCCCeEEEEEeC----CC---CE--EEEEehhcCccCC
Confidence 4568999999999776555434444322 2222 22111 12345555443 12 11 11212212222 3
Q ss_pred cEEEEEEEecCCCCCCCceEEEEEEEEEecCCCCCccEEEEEEEEEE
Q 001703 935 GWIVNEVMSLHDVPFDDHFRVHFRYEIEKSPLAHNACKCAIYIGISW 981 (1024)
Q Consensus 935 ~~vv~~~~~~~dVPygd~F~v~~r~~i~~~~~~~~~c~l~v~~~V~f 981 (1024)
.+.... .. .+.|+. .....|.++..+ +++|+|.......-
T Consensus 72 ~i~~~~-~~-~~~~~~---~~~~~~~~~~~~--~~~t~v~~~~~~~~ 111 (140)
T cd07821 72 RYSYRI-VE-GPLPVK---NYVATIRVTPEG--DGGTRVTWTAEFDP 111 (140)
T ss_pred EEEEEe-cC-CCCCcc---cceEEEEEEECC--CCccEEEEEEEEec
Confidence 333322 21 134443 357789999877 35777665555443
No 297
>cd07823 SRPBCC_5 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=67.87 E-value=1.2e+02 Score=29.39 Aligned_cols=137 Identities=5% Similarity=-0.003 Sum_probs=71.4
Q ss_pred ccccCCHHhHhhhccCChhHHHHHHHhCCcceeecccccCCCCceEEEEEEEEcccccCCCceecEEEEEeecC-CCCcE
Q 001703 858 AELPISVKALMEMFDGGKLEHQVMEKSGCHNYVTTPWDLVKPGVCERHLSYRFNRHVSIFGGEVTCTQQKSPLA-SGEGW 936 (1024)
Q Consensus 858 ~~~~~~~~~~f~lf~~~~~~~~~~~~~~~~~i~~~~W~~~~~~~~~R~~sy~~n~~~~~~~~~~~~~Q~~~~~~-~~~~~ 936 (1024)
.+++++++.+++++.|.+-+....- |+..+. . ..+..+.-.++.. +++......-.-+..... ....+
T Consensus 5 ~~v~a~pe~vw~~l~D~~~~~~~~p--g~~~~~---~--~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~ 73 (146)
T cd07823 5 FTVPAPPDRVWALLLDIERVAPCLP--GASLTE---V--EGDDEYKGTVKVK----LGPISASFKGTARLLEDDEAARRA 73 (146)
T ss_pred EEecCCHHHHHHHhcCHHHHHhcCC--Cceecc---c--cCCCeEEEEEEEE----EccEEEEEEEEEEEEeccCCCcEE
Confidence 3579999999998877665543211 111111 1 1122233333443 444322222111122222 23333
Q ss_pred EEEEEEecCCCCCCCceEEEEEEEEEecCCCCCccEEEEEEEEEEecc--cchhhhhhhhhHHhHHHHHHHHHHHHHHHH
Q 001703 937 IVNEVMSLHDVPFDDHFRVHFRYEIEKSPLAHNACKCAIYIGISWLKS--TKFQQRITQNITEKFTHRLKEMIELVEREI 1014 (1024)
Q Consensus 937 vv~~~~~~~dVPygd~F~v~~r~~i~~~~~~~~~c~l~v~~~V~f~Ks--t~~K~~Ie~~~~~g~~~~~~~~~~~~~~~i 1014 (1024)
.+. -.- .+.+.+....+...|.++..+ .+|+|.+...++.... .+++.+|++-+. ..++++++-+++.+
T Consensus 74 ~~~-~~g-~~~~~~g~~~~~~~~~l~~~~---~gT~v~~~~~~~~~g~l~~l~~~~v~~~~~----~~~~~~~~~l~~~~ 144 (146)
T cd07823 74 VLE-ATG-KDARGQGTAEATVTLRLSPAG---GGTRVTVDTDLALTGKLAQFGRGGIGDVAG----RLLAQFAANLEARL 144 (146)
T ss_pred EEE-EEE-ecCCCcceEEEEEEEEEEecC---CcEEEEEEEEEEEeeEhHHhChhHHHHHHH----HHHHHHHHHHHHHh
Confidence 333 111 234555666888889888733 6899999998887666 335666666554 44555555555443
No 298
>PF00407 Bet_v_1: Pathogenesis-related protein Bet v I family; InterPro: IPR000916 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Aln g 1, Api g 1, Bet v 1, Car b 1, Cor a 1, Dau c 1, Mal d 1 and Pru a 1. Trees within the order Fagales possess particularly potent allergens, e.g. Bet v1, the major White Birch (Betula verrucosa) pollen antigen. Bet v1 is the main cause of type I allergies observed in early spring. Type I, or immunoglobulin E-mediated (IgE-mediated) allergies affect 1 in 5 people in Europe and North America. Commonly-observed symptoms are hay fever, dermatitis, asthma and, in severe cases, anaphylactic shock. First contact with these allergens results in sensitisation; subsequent contact produces a cross-linking reaction of IgE on mast cells and concomitant release of histamine. The inevitable symptoms of an allergic reaction ensue. Recent NMR analysis [] has confirmed earlier predictions of the protein structure and site of the major T-cell epitope []. The Bet v1 protein comprises 6 anti-parallel beta-strands and 3 alpha-helices. Four of the strands dominate the global fold, and 2 of the helices form a C-terminal amphipathic helical motif. This motif is believed to be the T-cell epitope. Other proteins belonging to this family include the major pollen allergens: Aln g I from Alnus glutinosa (Alder); Api G I from Apium graveolens (Celery); Car b I from Carpinus betulus (European hornbeam); Cor a I from Corylus avellana (European hazel); Mal d I from Malus domestica (Apple). The motif is also found in: the wound-induced protein AoPR1 from Asparagus officinalis (Garden asparagus); pathogenesis-related proteins from Phaseolus vulgaris (Kidney bean) and Petroselinum crispum (Parsley) (PR1-1 and PR1-3); the disease resistance response proteins, STH-2 and STH-21, from Solanum tuberosum (Potato) and pI49, pI176 and DRRG49-C from Pisum sativum (Garden pea); the P. sativum abscisic acid-responsive proteins ABR17 and ABR18; and the stress-induced protein SAM22 from Glycine max (Soybean). ; GO: 0006952 defense response, 0009607 response to biotic stimulus; PDB: 1IFV_A 4A8V_A 4A8U_A 2K7H_A 2QIM_A 3E85_A 1H2O_A 1E09_A 1QMR_A 1FSK_D ....
Probab=66.74 E-value=1.2e+02 Score=29.98 Aligned_cols=139 Identities=15% Similarity=0.141 Sum_probs=77.8
Q ss_pred cccccCCHHhHhhhccC-ChhHHHHH-HHhCCcceeecccccCCCCceEEEEEEEEcccccCCCceecEEEEEeecCCCC
Q 001703 857 NAELPISVKALMEMFDG-GKLEHQVM-EKSGCHNYVTTPWDLVKPGVCERHLSYRFNRHVSIFGGEVTCTQQKSPLASGE 934 (1024)
Q Consensus 857 ~~~~~~~~~~~f~lf~~-~~~~~~~~-~~~~~~~i~~~~W~~~~~~~~~R~~sy~~n~~~~~~~~~~~~~Q~~~~~~~~~ 934 (1024)
+.+.++|++++|+.|.. ..+..+++ ..-..-++..++|. .++..|.++|. +-++ .-...| ++...|..
T Consensus 9 E~~~~~~a~k~~ka~~~~~~llpki~P~~i~sve~~eGdgg---~gGSIk~~~f~---~~~~---~~~~Ke-kve~~D~~ 78 (151)
T PF00407_consen 9 EVEVKVSADKLWKAFKSSPHLLPKILPHVIKSVEVVEGDGG---PGGSIKKWTFG---PGGP---FKYVKE-KVEAIDEE 78 (151)
T ss_dssp EEEESS-HHHHHHHHTTHHHHHHHHSTTTEEEEEEEESSSS---TTT-EEEEEEE---TTSS---EEEEEE-EEEEEETT
T ss_pred EEEecCCHHHHHHHHhcCccchhhhChhhceeEEEEccCCC---CCCeEEEEEec---CCCC---cceeEE-EEEeecCC
Confidence 34578999999997754 33555554 33344566678885 34789999997 2222 112233 44444555
Q ss_pred cEEEE-EEEecCCCCCCCceEEEEEEEEEecCCCCCccEEEEEEEEEEecccchhhhhhhh-hHHhHHHHHHHHHHHHHH
Q 001703 935 GWIVN-EVMSLHDVPFDDHFRVHFRYEIEKSPLAHNACKCAIYIGISWLKSTKFQQRITQN-ITEKFTHRLKEMIELVER 1012 (1024)
Q Consensus 935 ~~vv~-~~~~~~dVPygd~F~v~~r~~i~~~~~~~~~c~l~v~~~V~f~Kst~~K~~Ie~~-~~~g~~~~~~~~~~~~~~ 1012 (1024)
...+. ++.- -| +.+++..-.....+.+.+ ..+|. +.+.++|-+.. +.. .-+...+.+..+++.++.
T Consensus 79 ~~~~~y~viE-Gd-~l~~~~~~~~~~~~~~~~--~g~~v--~k~t~~Ye~~~------~~~~~p~~~~~~~~~~~K~iea 146 (151)
T PF00407_consen 79 NKTITYTVIE-GD-VLGDYKSFKSTIQKIPKG--DGGCV--VKWTIEYEKKG------EDVPPPEKYLDFAVGMFKAIEA 146 (151)
T ss_dssp TTEEEEEEEE-ET-TGTTTEEEEEEEEEEEET--TSCEE--EEEEEEEEESS------TSCHHHHHHHHHHHHHHHHHHH
T ss_pred CcEEEEEEEe-cc-ccccEEEEEEEEEecCCC--CCceE--EEEEEEEEecC------CCCCCcHHHHHHHHHHHHHHHH
Confidence 44443 4343 33 455555555555555555 24454 45556665532 222 344555667888888888
Q ss_pred HHhhc
Q 001703 1013 EILFA 1017 (1024)
Q Consensus 1013 ~i~~~ 1017 (1024)
|+.++
T Consensus 147 yLlan 151 (151)
T PF00407_consen 147 YLLAN 151 (151)
T ss_dssp HHHHT
T ss_pred HHhcC
Confidence 88654
No 299
>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and STARD3 (also known as metastatic lymph node 64/MLN64). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. This STARD1-like subfamily has a high affinity for cholesterol. STARD1/StAR can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synth
Probab=65.59 E-value=86 Score=32.81 Aligned_cols=144 Identities=8% Similarity=0.013 Sum_probs=71.8
Q ss_pred cccccCCHHhHhh-hccCChhHHHHHHHhCCcceeecccccCCCCceEEEEEEEEcc-cccCC-Cc-eecEEEEEeecCC
Q 001703 857 NAELPISVKALME-MFDGGKLEHQVMEKSGCHNYVTTPWDLVKPGVCERHLSYRFNR-HVSIF-GG-EVTCTQQKSPLAS 932 (1024)
Q Consensus 857 ~~~~~~~~~~~f~-lf~~~~~~~~~~~~~~~~~i~~~~W~~~~~~~~~R~~sy~~n~-~~~~~-~~-~~~~~Q~~~~~~~ 932 (1024)
...++++++.+|+ ++.+.+...+.........+ +. . .+...+ +.|.... +.+.+ .. .....+ +....+
T Consensus 53 ~~~i~~~~~~v~~~l~~d~~~~~~Wd~~~~~~~~-i~---~--~d~~~~-i~y~~~~~~~~~~vs~RDfV~~r-~~~~~~ 124 (208)
T cd08868 53 TGVLDCPAEFLYNELVLNVESLPSWNPTVLECKI-IQ---V--IDDNTD-ISYQVAAEAGGGLVSPRDFVSLR-HWGIRE 124 (208)
T ss_pred EEEEcCCHHHHHHHHHcCccccceecCcccceEE-EE---E--ecCCcE-EEEEEecCcCCCcccccceEEEE-EEEecC
Confidence 4568999999997 77655432222222111111 00 0 111223 4454323 32222 22 222223 222333
Q ss_pred CCcEEEE-EEEecCCCCCCCceE----EEEEEEEEecCCCCCccEEEEEEEEEEecccchhhhhhhhhHHhHHHHHHHHH
Q 001703 933 GEGWIVN-EVMSLHDVPFDDHFR----VHFRYEIEKSPLAHNACKCAIYIGISWLKSTKFQQRITQNITEKFTHRLKEMI 1007 (1024)
Q Consensus 933 ~~~~vv~-~~~~~~dVPygd~F~----v~~r~~i~~~~~~~~~c~l~v~~~V~f~Kst~~K~~Ie~~~~~g~~~~~~~~~ 1007 (1024)
..++|. ....-+..|-..-|. ....|.|++.+.++++|++...+.++..++ .=+.++.+.+.+.+-+.++.|-
T Consensus 125 -~~~~i~~~sv~h~~~P~~~g~VR~~~~~~~~~i~p~~~~~~~t~v~~~~~~Dp~G~-iP~~lvN~~~~~~~~~~~~~Lr 202 (208)
T cd08868 125 -NCYLSSGVSVEHPAMPPTKNYVRGENGPGCWILRPLPNNPNKCNFTWLLNTDLKGW-LPQYLVDQALASVLLDFMKHLR 202 (208)
T ss_pred -CeEEEEEEeccCCCCCCCCCeEEEeccccEEEEEECCCCCCceEEEEEEEECCCCC-CcceeeehhhHHHHHHHHHHHH
Confidence 445544 333335666555443 447899999865457899999999999766 1122244444444445544444
Q ss_pred HHH
Q 001703 1008 ELV 1010 (1024)
Q Consensus 1008 ~~~ 1010 (1024)
+.+
T Consensus 203 ~~~ 205 (208)
T cd08868 203 KRI 205 (208)
T ss_pred HHH
Confidence 333
No 300
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=65.58 E-value=14 Score=38.10 Aligned_cols=55 Identities=16% Similarity=0.264 Sum_probs=39.0
Q ss_pred EEeeecccCCCCCeEeEEEEEEeecC--CCCeEEEEEEecCCCCCCC--ccceEEEEEcc
Q 001703 569 TRTSSVQLQTCDPQWHDILEFDAMEE--PPSVLDVEVFDFDGPFDQA--TSLGHAEINFL 624 (1024)
Q Consensus 569 ~~kT~~~~~t~nP~WnE~f~f~~~~~--~~~~L~v~V~D~d~~~~~d--d~lG~~~i~l~ 624 (1024)
.++|-+...+.+|.|||++.+.+..+ ....|.|++++.-. -.+. ..+|-+.++|-
T Consensus 54 e~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~-~~k~~~~pfg~s~lpL~ 112 (189)
T cd08695 54 EYRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCST-KDKGEKKLFGFSFVPLM 112 (189)
T ss_pred eEEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEeee-ccCCCCCceEEEEEeec
Confidence 56899999999999999999997443 45689998887543 1111 34666666654
No 301
>cd08904 START_STARD6-like Lipid-binding START domain of mammalian STARD6 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD6 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD6 is expressed in male germ cells of normal rats, and in the steroidogenic Leydig cells of perinatal hypothyroid testes. It may play a pivotal role in the steroidogenesis as well as in the spermatogenesis of normal rats. STARD6 has also been detected in the rat nervous system, and may participate in neurosteroid synthesis.
Probab=65.49 E-value=1.7e+02 Score=30.58 Aligned_cols=78 Identities=12% Similarity=0.128 Sum_probs=53.0
Q ss_pred CCCCcEEEE-EEEecCCC-CCCCceEE---EEEEEEEecCCCCCccEEEEEEEEEEecccchhhhhhhhhHHhHHHHHHH
Q 001703 931 ASGEGWIVN-EVMSLHDV-PFDDHFRV---HFRYEIEKSPLAHNACKCAIYIGISWLKSTKFQQRITQNITEKFTHRLKE 1005 (1024)
Q Consensus 931 ~~~~~~vv~-~~~~~~dV-Pygd~F~v---~~r~~i~~~~~~~~~c~l~v~~~V~f~Kst~~K~~Ie~~~~~g~~~~~~~ 1005 (1024)
+++..|++. ....-|.. |-.++.+- -+-|.|++.+++++.|++....+++. |.-.=|+.|++.--+.+.+.+..
T Consensus 120 ~~~~~~ii~~~sv~Hp~~Pp~~g~VRa~n~~~G~~i~pl~~~p~~t~l~~~~~~Dl-kG~lP~~vv~~~~~~~~~~f~~~ 198 (204)
T cd08904 120 YEGNMNIVSSVSVEYPQCPPSSNYIRGYNHPCGYVCSPLPENPAYSKLVMFVQPEL-RGNLSRSVIEKTMPTNLVNLILD 198 (204)
T ss_pred eCCCEEEEEEEecccCCCCCCCCcEEEeeeccEEEEEECCCCCCceEEEEEEEeCC-CCCCCHHHHHHHhHHHHHHHHHH
Confidence 356667775 33333444 33454443 45689999987678899999999888 44456888888877777777766
Q ss_pred HHHH
Q 001703 1006 MIEL 1009 (1024)
Q Consensus 1006 ~~~~ 1009 (1024)
+-+.
T Consensus 199 ~~~~ 202 (204)
T cd08904 199 AKDG 202 (204)
T ss_pred HHHh
Confidence 6543
No 302
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=62.28 E-value=14 Score=37.72 Aligned_cols=58 Identities=14% Similarity=0.314 Sum_probs=38.1
Q ss_pred eecccCCCCCeEeeEEEEEEe-c-CCCCeEEEEEEecCCCCCCCCCCCCeeEEEEEeCcc
Q 001703 34 SRILKNNSNPVWNEEFVFRVH-N-IDDEELVVSVFQHNDDSGLFGSSGELMGRVRVPVSS 91 (1024)
Q Consensus 34 T~v~~~t~nP~WnE~f~f~v~-~-~~~~~L~v~V~d~d~~~~f~~~~d~~lG~~~i~L~~ 91 (1024)
+.++....+|.|+|++.+.++ + .....|.|++++..-+..-.......+|-+.+||-+
T Consensus 56 ~sv~~~~k~p~f~deiKi~LP~~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~ 115 (178)
T cd08679 56 TSVVYYHKNPVFNDEIKIQLPADLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMD 115 (178)
T ss_pred EEEEEcCCCCCCceeEEEecCCccCCCeEEEEEEEccccccccCCCccceEEEEEEeccc
Confidence 444444489999999999998 2 357899999999772110000224577777777654
No 303
>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD10 (also known as CGI-52, PTCP-like, and SDCCAG28). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD10 binds phophatidylcholine and phosphatidylethanolamine. This protein is widely expressed and is synthesized constitutively in many organs. It may function in the liver in the export of phospholipids into bile. It is concentrated in the sperm flagellum, and may play a role in energy metabolism. In the mammary gland it may participate in the enrichment of lipids in milk, and be a potential marker of differentiation. Its expression is induced in this gland during gestation and lactation. It is overe
Probab=60.06 E-value=2.3e+02 Score=29.88 Aligned_cols=148 Identities=10% Similarity=0.029 Sum_probs=75.7
Q ss_pred cc-cCCHHhHhhhccCChhHHHHHHHhCCcceeecccccCCCCceEEEEEEEE-cccccCCCceecEEEEEeecCCCCcE
Q 001703 859 EL-PISVKALMEMFDGGKLEHQVMEKSGCHNYVTTPWDLVKPGVCERHLSYRF-NRHVSIFGGEVTCTQQKSPLASGEGW 936 (1024)
Q Consensus 859 ~~-~~~~~~~f~lf~~~~~~~~~~~~~~~~~i~~~~W~~~~~~~~~R~~sy~~-n~~~~~~~~~~~~~Q~~~~~~~~~~~ 936 (1024)
++ +++++.+|+++.+.....+.........+ +.....+ . .+.|.. +.|..-..-....... ....++..+
T Consensus 54 ~~~~~s~e~~~~~l~D~~~r~~Wd~~~~e~~~-ie~~d~~-----~-~i~y~~~~~P~pvs~RDfV~~r~-~~~~~~~~v 125 (222)
T cd08871 54 IFPDVPAETLYDVLHDPEYRKTWDSNMIESFD-ICQLNPN-----N-DIGYYSAKCPKPLKNRDFVNLRS-WLEFGGEYI 125 (222)
T ss_pred EeCCCCHHHHHHHHHChhhhhhhhhhhceeEE-EEEcCCC-----C-EEEEEEeECCCCCCCCeEEEEEE-EEeCCCEEE
Confidence 35 58999999966555544433333211111 2222111 1 344432 3343211112222222 222333334
Q ss_pred EEEEEEecCCCCCCCce-E---EEEEEEEEecCCCCCccEEEEEEEEEEecccchhhhhhhhhHHhHHHHHHHHHHHHHH
Q 001703 937 IVNEVMSLHDVPFDDHF-R---VHFRYEIEKSPLAHNACKCAIYIGISWLKSTKFQQRITQNITEKFTHRLKEMIELVER 1012 (1024)
Q Consensus 937 vv~~~~~~~dVPygd~F-~---v~~r~~i~~~~~~~~~c~l~v~~~V~f~Kst~~K~~Ie~~~~~g~~~~~~~~~~~~~~ 1012 (1024)
++......+++|-..-+ + ....|.|++.+ +++|++.....++..++ .=+.+|.+-+....-..++.|-+++++
T Consensus 126 i~~~sv~~~~~P~~~g~VR~~~~~~g~~i~p~~--~~~t~vt~~~~~Dp~G~-IP~~lvN~~~~~~~~~~l~~l~k~~~~ 202 (222)
T cd08871 126 IFNHSVKHKKYPPRKGFVRAISLLTGYLIRPTG--PKGCTLTYVTQNDPKGS-LPKWVVNKATTKLAPKVMKKLHKAALK 202 (222)
T ss_pred EEeccccCCCCCCCCCeEEeEEEccEEEEEECC--CCCEEEEEEEecCCCCC-cCHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 55555555788876653 2 24568898876 57899999999999775 223333333333344566666666666
Q ss_pred HHhhc
Q 001703 1013 EILFA 1017 (1024)
Q Consensus 1013 ~i~~~ 1017 (1024)
+-+-.
T Consensus 203 y~~~~ 207 (222)
T cd08871 203 YPEWK 207 (222)
T ss_pred HHHHH
Confidence 55433
No 304
>PF08567 TFIIH_BTF_p62_N: TFIIH p62 subunit, N-terminal domain; InterPro: IPR013876 The N-terminal region of the TFIIH basal transcription factor complex p62 subunit (BTF2-p62) forms an interaction with the 3' endonuclease XPG, which is essential for activity. The 3' endonuclease XPG is a major component of the nucleotide excision repair machinery. The structure of the N-terminal region reveals that it adopts a pleckstrin homology (PH) fold [, ]. ; PDB: 1Y5O_A 2LOX_A 2GS0_A 2L2I_A 2K2U_A 1PFJ_A 2RNR_B.
Probab=57.19 E-value=30 Score=30.28 Aligned_cols=39 Identities=15% Similarity=0.198 Sum_probs=30.5
Q ss_pred ccceeeeecE--EEEEeccCCCeEEEEEecccceeeEeccc
Q 001703 718 QGRLFLSARI--VGFYANLFGNKTKFFFLWEDIEDIQILSP 756 (1024)
Q Consensus 718 ~G~lyis~~~--~cF~s~~~g~~~~~~i~~~di~~i~k~~~ 756 (1024)
.|.||+++.+ +-|-.+--+....+.|||.+|.+.+-++.
T Consensus 13 ~G~L~l~~d~~~~~W~~~~~~~~~~v~i~~~~I~~lq~Sp~ 53 (79)
T PF08567_consen 13 DGTLTLTEDRKPLEWTPKASDGPSTVSIPLNDIKNLQQSPE 53 (79)
T ss_dssp EEEEEEETTCSSEEEEECCSSSSSEEEEETTTEEEEEE--T
T ss_pred CcEEEEecCCceEEEeecCCCCCceEEEEHHHhhhhccCCC
Confidence 3999999999 99887644434479999999999998874
No 305
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=56.79 E-value=28 Score=35.62 Aligned_cols=56 Identities=18% Similarity=0.282 Sum_probs=37.4
Q ss_pred EEeeecccCCCCCeEeEEEEEEeecC--CCCeEEEEEEecCCCC----CCCccceEEEEEccc
Q 001703 569 TRTSSVQLQTCDPQWHDILEFDAMEE--PPSVLDVEVFDFDGPF----DQATSLGHAEINFLK 625 (1024)
Q Consensus 569 ~~kT~~~~~t~nP~WnE~f~f~~~~~--~~~~L~v~V~D~d~~~----~~dd~lG~~~i~l~~ 625 (1024)
.++|-+..+ .+|.|+|+|.+.+..+ +...|.|++++.+..- .....+|-+.++|-+
T Consensus 54 ~~~sv~~~~-k~p~f~deiKi~LP~~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~ 115 (178)
T cd08679 54 EYTSVVYYH-KNPVFNDEIKIQLPADLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMD 115 (178)
T ss_pred eEEEEEEcC-CCCCCceeEEEecCCccCCCeEEEEEEEccccccccCCCccceEEEEEEeccc
Confidence 344444444 9999999999997433 3558999999976410 123566777776664
No 306
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=56.29 E-value=27 Score=35.71 Aligned_cols=39 Identities=13% Similarity=0.346 Sum_probs=33.0
Q ss_pred EEeeecccCCCCCeEeeEEEEEEe--cCCCCeEEEEEEecC
Q 001703 31 KSKSRILKNNSNPVWNEEFVFRVH--NIDDEELVVSVFQHN 69 (1024)
Q Consensus 31 ~~rT~v~~~t~nP~WnE~f~f~v~--~~~~~~L~v~V~d~d 69 (1024)
...|.|...+.+|.|+|++.+.++ ......|.|+.++.+
T Consensus 55 ~~~S~V~yHnk~P~f~DEiKi~LP~~l~~~hHLlFtF~Hvs 95 (179)
T cd08696 55 EAYTAVTYHNKSPDFYDEIKIKLPADLTDNHHLLFTFYHIS 95 (179)
T ss_pred eEEEEEEEeCCCCcccceEEEEcCCCCCCCeEEEEEEEEee
Confidence 377888888999999999999987 345578999999976
No 307
>PRK10724 hypothetical protein; Provisional
Probab=55.73 E-value=1.5e+02 Score=29.71 Aligned_cols=131 Identities=11% Similarity=0.166 Sum_probs=66.8
Q ss_pred cccccCCHHhHhhhccCChhHHHHHHHhCCcceeecccccCCCCceEEEEEEEEcccccCCC-ceecEEEEEeecCCCCc
Q 001703 857 NAELPISVKALMEMFDGGKLEHQVMEKSGCHNYVTTPWDLVKPGVCERHLSYRFNRHVSIFG-GEVTCTQQKSPLASGEG 935 (1024)
Q Consensus 857 ~~~~~~~~~~~f~lf~~~~~~~~~~~~~~~~~i~~~~W~~~~~~~~~R~~sy~~n~~~~~~~-~~~~~~Q~~~~~~~~~~ 935 (1024)
+..++.+++++|+|..|-.-+.+|+--+.... +-.. .++ .. ....+ ++..+ .....+ +....+.+.
T Consensus 20 ~~~v~~s~~~v~~lv~Dve~yp~flp~~~~s~--vl~~--~~~-~~--~a~l~----v~~~g~~~~f~s--rv~~~~~~~ 86 (158)
T PRK10724 20 TALVPYSAEQMYQLVNDVQSYPQFLPGCTGSR--VLES--TPG-QM--TAAVD----VSKAGISKTFTT--RNQLTSNQS 86 (158)
T ss_pred EEEecCCHHHHHHHHHHHHHHHHhCcccCeEE--EEEe--cCC-EE--EEEEE----EeeCCccEEEEE--EEEecCCCE
Confidence 45689999999998866665666655543222 2221 111 11 22222 12111 111111 111122232
Q ss_pred EEEEEEEecCCCCCCCceEEEEEEEEEecCCCCCccEEEEEEEEEEecccchhhhhhhhhHHhHHHHHHHHHHHHHHHH
Q 001703 936 WIVNEVMSLHDVPFDDHFRVHFRYEIEKSPLAHNACKCAIYIGISWLKSTKFQQRITQNITEKFTHRLKEMIELVEREI 1014 (1024)
Q Consensus 936 ~vv~~~~~~~dVPygd~F~v~~r~~i~~~~~~~~~c~l~v~~~V~f~Kst~~K~~Ie~~~~~g~~~~~~~~~~~~~~~i 1014 (1024)
|.-... .+ |+.. .+..|.+++.+ +++|+|.....++| |+.++..+..... ++..+.|++..++.+
T Consensus 87 --I~~~~~-~G-pF~~---l~g~W~f~p~~--~~~t~V~~~l~fef-~s~l~~~~~~~~~----~~~~~~mv~AF~~Ra 151 (158)
T PRK10724 87 --ILMQLV-DG-PFKK---LIGGWKFTPLS--QEACRIEFHLDFEF-TNKLIELAFGRVF----KELASNMVQAFTVRA 151 (158)
T ss_pred --EEEEec-CC-Chhh---ccceEEEEECC--CCCEEEEEEEEEEE-chHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 222221 23 5444 89999999987 46798888877776 6666553333332 344455555554444
No 308
>cd01201 Neurobeachin Neurobeachin Pleckstrin homology-like domain. Neurobeachin Pleckstrin homology-like domain. This domain is found in the large multi-domain eukaryotic protein Nerubeachin, N-terminal to the BEACH domain. This PH-like domain interacts with the BEACH domain in the same manner used by other PH-like domains to bind peptides.
Probab=55.13 E-value=23 Score=32.78 Aligned_cols=89 Identities=17% Similarity=0.172 Sum_probs=57.0
Q ss_pred ccccceeeeeec-ccccccceeeeecEEEEEecc----C-CC---------eEEEEEecccceeeEeccccccccCCCcE
Q 001703 702 FLIKDFTCYLKR-KMPLQGRLFLSARIVGFYANL----F-GN---------KTKFFFLWEDIEDIQILSPSLATVGSPSL 766 (1024)
Q Consensus 702 ~l~~~~~c~~~~-~~~~~G~lyis~~~~cF~s~~----~-g~---------~~~~~i~~~di~~i~k~~~~~~~~~~~~i 766 (1024)
+++-+..|.+-. -.-..|++-||..+++|.... + +. .....+++++|..|.+..-- +-.-++
T Consensus 2 ~ivls~~~~mVtPl~vvpG~l~ITt~~lyF~~d~~~~~~~~~~~~vl~~~~~~~~~w~ls~Ir~v~~RRyl---Lr~~al 78 (108)
T cd01201 2 PVLLSTPASLIAPGVVVKGTLSITTTEIFFEVDERDSQFKKIDDEVLSYCEELHGKWPFSEIRAIFSRRYL---LQNTAL 78 (108)
T ss_pred CeEEEeeeeEEEEEEEeccEEEEecCEEEEEECCccccccccCccceeccccccceeeHHHHHHHHHHhhh---cccceE
Confidence 344556676654 334669999999999999631 1 11 11347899999999887632 223468
Q ss_pred EEEEeccCCcccCCCccccCCCCceEEEEEeecChhHHHHHHHHH
Q 001703 767 VIILWKGRGLDARHGAKSQDEEGRLRFYFQSFVSFNDASRTIMAL 811 (1024)
Q Consensus 767 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~f~sf~~rd~~~~~l~~~ 811 (1024)
+|++.. +.. .|-+|-+++.+...+..+
T Consensus 79 EiF~~d-----------------~~~-~f~~F~~~~~~k~vv~~l 105 (108)
T cd01201 79 ELFLAS-----------------RTS-IFFAFPDQNAVKKVVYAL 105 (108)
T ss_pred EEEEeC-----------------Cce-EEEEeCcHHHHHHHHhhc
Confidence 888742 123 455787777777666543
No 309
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=55.03 E-value=31 Score=35.28 Aligned_cols=57 Identities=12% Similarity=0.219 Sum_probs=39.8
Q ss_pred EEEeeecccCCCCCeEeEEEEEEeecC--CCCeEEEEEEecCCCCCC------CccceEEEEEccc
Q 001703 568 KTRTSSVQLQTCDPQWHDILEFDAMEE--PPSVLDVEVFDFDGPFDQ------ATSLGHAEINFLK 625 (1024)
Q Consensus 568 ~~~kT~~~~~t~nP~WnE~f~f~~~~~--~~~~L~v~V~D~d~~~~~------dd~lG~~~i~l~~ 625 (1024)
....|.+..++.+|.|+|++.+.+..+ ....|.|+.++.+. -.+ ...+|-+.+||-.
T Consensus 54 ~~~~S~V~yHnk~P~f~DEiKi~LP~~l~~~hHLlFtF~Hvs~-~~k~~~~~~e~~~Gys~lPL~~ 118 (179)
T cd08696 54 TEAYTAVTYHNKSPDFYDEIKIKLPADLTDNHHLLFTFYHISC-QKKQEGGSVETPIGYTWLPLLR 118 (179)
T ss_pred eeEEEEEEEeCCCCcccceEEEEcCCCCCCCeEEEEEEEEeec-cccccCCCccceEEEEEEeeec
Confidence 456788899999999999999987444 34589999998654 111 1345655555553
No 310
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=54.71 E-value=47 Score=33.64 Aligned_cols=67 Identities=13% Similarity=0.209 Sum_probs=49.8
Q ss_pred CcEEEEEECCEEE-eeec--ccCCCCCeEeEEEEEEeecCCCCeEEEEEEecCCCCCCCccceEEEEEccccc
Q 001703 558 DPYVVFTCNGKTR-TSSV--QLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQATSLGHAEINFLKHT 627 (1024)
Q Consensus 558 DPyv~v~~~~~~~-kT~~--~~~t~nP~WnE~f~f~~~~~~~~~L~v~V~D~d~~~~~dd~lG~~~i~l~~l~ 627 (1024)
--|++|.++++.. +|+. ......=.+||.|.+.+. .....|.++||.... ..+..|+++.+++....
T Consensus 38 ~~~ikl~~N~k~V~~T~~~~l~~dF~v~f~~~f~v~i~-~~Pesi~l~i~E~~~--~~~~~la~v~vpvP~~~ 107 (168)
T PF15625_consen 38 RYYIKLFFNDKEVSRTRSRPLWSDFRVHFNEIFNVQIT-RWPESIKLEIYEKSG--LSDRLLAEVFVPVPGST 107 (168)
T ss_pred eEEEEEEECCEEEEeeeeEecCCCeEEeccCEEEEEEe-cCCCEEEEEEEEccC--ccceEEEEEEeeCCCCc
Confidence 4588888887654 4444 223444567899999964 477899999999876 57789999999998743
No 311
>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD1 has a high affinity for cholesterol. It can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synthesis deficiency and an accumulation of cholesterol in
Probab=54.47 E-value=2.3e+02 Score=29.68 Aligned_cols=78 Identities=8% Similarity=-0.040 Sum_probs=47.6
Q ss_pred CCCcEEEEEEEecCCCCC-CCceE---EEEEEEEEecCCCCCccEEEEEEEEEEecccchhhhhhhhhHHhHHHHHHHHH
Q 001703 932 SGEGWIVNEVMSLHDVPF-DDHFR---VHFRYEIEKSPLAHNACKCAIYIGISWLKSTKFQQRITQNITEKFTHRLKEMI 1007 (1024)
Q Consensus 932 ~~~~~vv~~~~~~~dVPy-gd~F~---v~~r~~i~~~~~~~~~c~l~v~~~V~f~Kst~~K~~Ie~~~~~g~~~~~~~~~ 1007 (1024)
++..+++......+..|= .++-+ ....|.|++.+.++++|++.....++..++ .=+.++.+...+..-++++.|-
T Consensus 125 ~~~~~~~~~s~~~~~~P~~~~~VR~~~~~~~w~l~p~~~~~~~t~v~~~~~~DpkG~-iP~~lvN~~~~~~~~~~~~~Lr 203 (209)
T cd08905 125 GSTCVLAGMATHFGLMPEQKGFIRAENGPTCIVLRPLAGDPSKTKLTWLLSIDLKGW-LPKSIINQVLSQTQVDFANHLR 203 (209)
T ss_pred CCcEEEEEEeecCCCCCCCCCeEEEEeeccEEEEEECCCCCCceEEEEEEeecCCCC-CCHHHHHHHhHHhHHHHHHHHH
Confidence 444444454444455543 34433 557899999874458899999999998554 4455566555555555555544
Q ss_pred HHH
Q 001703 1008 ELV 1010 (1024)
Q Consensus 1008 ~~~ 1010 (1024)
+.+
T Consensus 204 ~~~ 206 (209)
T cd08905 204 QRM 206 (209)
T ss_pred HHH
Confidence 443
No 312
>PF06115 DUF956: Domain of unknown function (DUF956); InterPro: IPR010360 This is a family of bacterial sequences with undetermined function.
Probab=50.93 E-value=23 Score=33.13 Aligned_cols=39 Identities=15% Similarity=0.371 Sum_probs=31.1
Q ss_pred ccccccceeeeecEEEEEeccCCCeEEEEEecccceeeEe
Q 001703 714 KMPLQGRLFLSARIVGFYANLFGNKTKFFFLWEDIEDIQI 753 (1024)
Q Consensus 714 ~~~~~G~lyis~~~~cF~s~~~g~~~~~~i~~~di~~i~k 753 (1024)
.+.-+|++.+-.+-+-||.+-.. +--+.|||++|..|..
T Consensus 20 g~~~yGkimiGDkaFEFyn~~n~-~dyIQIPW~eI~~V~a 58 (118)
T PF06115_consen 20 GLGKYGKIMIGDKAFEFYNDRNV-EDYIQIPWEEIDYVIA 58 (118)
T ss_pred cccccCeEEEcccceEeecCCCh-hhcEEeChhheeEEEE
Confidence 45577999999999999876543 3447899999998875
No 313
>PTZ00447 apical membrane antigen 1-like protein; Provisional
Probab=50.78 E-value=1.3e+02 Score=33.31 Aligned_cols=109 Identities=15% Similarity=0.228 Sum_probs=75.2
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECCEEEeeecccCCCCCeEe--EEEEEEeecCCCCeEEEEEEecCCCCCCCc
Q 001703 537 VLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQWH--DILEFDAMEEPPSVLDVEVFDFDGPFDQAT 614 (1024)
Q Consensus 537 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~~~~t~nP~Wn--E~f~f~~~~~~~~~L~v~V~D~d~~~~~dd 614 (1024)
.|-|.+.+-.++.. ...-|+.+..|+...+|..+.-+..-+-+ +..... ...-...|++.||-... .+..
T Consensus 59 ~LLVeI~EI~~i~k-----~khiyIef~~Gr~d~TT~~IpTsKK~RI~IqqRV~Ik-IRQcDnTLkI~lfKKkL--vkk~ 130 (508)
T PTZ00447 59 YLLVKINEIFNINK-----YKHIYIIFSTDKYDFTTDEIPTNKKNRIHIDQRVDIK-IRQCDETLRVDLFTTKL--TKKV 130 (508)
T ss_pred eEEEEehhhhcccc-----ceeEEEEEEcCceEEEccccccCcCceEEEeeeeeee-eeecCceEEEEEEeccc--ccee
Confidence 56677777666654 34689999999999988665444433333 444444 23345689999998775 6678
Q ss_pred cceEEEEEccc--ccCCCccceEEEccccccccccceeEEEEE
Q 001703 615 SLGHAEINFLK--HTSTELADMWVSLEGKLAQSAQSKVHLRIF 655 (1024)
Q Consensus 615 ~lG~~~i~l~~--l~~~~~~~~w~~L~~~~~~~~~g~l~l~~~ 655 (1024)
-||.+.|++.. +...-+...||-+...+ ...+++.|++.
T Consensus 131 hIgdI~InIn~dIIdk~FPKnkWy~c~kDG--q~~cRIqLSFh 171 (508)
T PTZ00447 131 HIGQIKIDINASVISKSFPKNEWFVCFKDG--QEICKVQMSFY 171 (508)
T ss_pred EEEEEEecccHHHHhccCCccceEEEecCC--ceeeeEEEEeh
Confidence 99999999987 44555778999995422 23567877774
No 314
>cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP), and STARD7 (also known as gestational trophoblastic tumor 1/GTT1). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may also have a mitochondrial function. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be invo
Probab=48.36 E-value=3.4e+02 Score=28.33 Aligned_cols=148 Identities=8% Similarity=-0.017 Sum_probs=82.0
Q ss_pred ccc-cCCHHhHhhhccCChhHHHHHHHhCCcceeecccccCCCCceEEEEEEEEcccccCCCc-eecEEEEEeecCCCCc
Q 001703 858 AEL-PISVKALMEMFDGGKLEHQVMEKSGCHNYVTTPWDLVKPGVCERHLSYRFNRHVSIFGG-EVTCTQQKSPLASGEG 935 (1024)
Q Consensus 858 ~~~-~~~~~~~f~lf~~~~~~~~~~~~~~~~~i~~~~W~~~~~~~~~R~~sy~~n~~~~~~~~-~~~~~Q~~~~~~~~~~ 935 (1024)
.+| +++++.+++++.|.++..+.....-...+- . ..+. ...+.+.|....|. |... ...-..+.....++..
T Consensus 56 ~~~~~~s~~~~~~~l~D~~~r~~Wd~~~~~~~~l-e---~~~~-~~~~i~y~~~~~P~-P~s~RD~V~~r~~~~~~~~~~ 129 (209)
T cd08870 56 GVFEDCTPELLRDFYWDDEYRKKWDETVIEHETL-E---EDEK-SGTEIVRWVKKFPF-PLSDREYVIARRLWESDDRSY 129 (209)
T ss_pred EEEcCCCHHHHHHHHcChhhHhhhhhheeeEEEE-E---ecCC-CCcEEEEEEEECCC-cCCCceEEEEEEEEEcCCCEE
Confidence 456 679999999877777665555543322211 1 1111 01344444444443 2211 2222121222223433
Q ss_pred EEEEEEEecCCCCCCCceE---EEEEEEEEecCCCCCccEEEEEEEEEEecccchhhhhhhhhHHhHHHHHHHHHHHHHH
Q 001703 936 WIVNEVMSLHDVPFDDHFR---VHFRYEIEKSPLAHNACKCAIYIGISWLKSTKFQQRITQNITEKFTHRLKEMIELVER 1012 (1024)
Q Consensus 936 ~vv~~~~~~~dVPygd~F~---v~~r~~i~~~~~~~~~c~l~v~~~V~f~Kst~~K~~Ie~~~~~g~~~~~~~~~~~~~~ 1012 (1024)
+++.....-+.+|-.+.-+ ....|.|++...++++|++.+.+..+- +...=+.++...+..+.-..++.|-+.+.+
T Consensus 130 ~i~~~sv~~~~~P~~~~vRv~~~~~~~~i~p~~~~~~~t~~~~~~~~dp-~G~IP~wlvN~~~~~~~~~~l~~l~~a~~~ 208 (209)
T cd08870 130 VCVTKGVPYPSVPRSGRKRVDDYESSLVIRAVKGDGQGSACEVTYFHNP-DGGIPRELAKLAVKRGMPGFLKKLENALRK 208 (209)
T ss_pred EEEEeCCcCCCCCCCCcEEEEEEEeEEEEEEecCCCCceEEEEEEEECC-CCCCCHHHHHHHHHhhhHHHHHHHHHHHhc
Confidence 4444444435888764443 456799998732257888888888875 555556677777777777787777776654
No 315
>cd08861 OtcD1_ARO-CYC_like N-terminal and C-terminal aromatase/cyclase domains of Streptomyces rimosus OtcD1 and related domains. This family includes the N- and C- terminal aromatase/cyclase (ARO/CYC) domains of Streptomyces rimosus OtcD1 and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, didomain and monodomain. Didomain aromatase/cyclases (ARO/CYCs), contain two ARO/CYC domains, and are associated with C7-C12 first ring cyclized polyketides. Streptomyces rimosus OtcD1 is a didomain ARO/CYC. The polyketide Oxytetracycline (OTC) is a broad spectrum antibiotic made by Streptomyces rimosus. The gene encoding OtcD1 is part of oxytetracycline (OTC) gene cluster. Disruption of this
Probab=48.10 E-value=2.3e+02 Score=26.98 Aligned_cols=34 Identities=3% Similarity=-0.055 Sum_probs=25.5
Q ss_pred CceEEEEEEEEEecCCCCCccEEEEEEEEEEecccc
Q 001703 951 DHFRVHFRYEIEKSPLAHNACKCAIYIGISWLKSTK 986 (1024)
Q Consensus 951 d~F~v~~r~~i~~~~~~~~~c~l~v~~~V~f~Kst~ 986 (1024)
+....+.+|.+++.+ +.+|+|.....+++.....
T Consensus 82 ~~~~~~g~w~~~~~~--~~~t~Vt~~~~~~~~~~~~ 115 (142)
T cd08861 82 PVASMSGEWRFEPLG--GGGTRVTLRHDFTLGIDSP 115 (142)
T ss_pred ChhhheeEEEEEECC--CCcEEEEEEEEEEECCCCc
Confidence 445678899999987 3678888888888875444
No 316
>smart00683 DM16 Repeats in sea squirt COS41.4, worm R01H10.6, fly CG1126 etc.
Probab=48.05 E-value=37 Score=27.41 Aligned_cols=34 Identities=9% Similarity=0.156 Sum_probs=29.7
Q ss_pred ccceeeeecEEEEEeccCCCeEEEEEecccceeeE
Q 001703 718 QGRLFLSARIVGFYANLFGNKTKFFFLWEDIEDIQ 752 (1024)
Q Consensus 718 ~G~lyis~~~~cF~s~~~g~~~~~~i~~~di~~i~ 752 (1024)
-|++++|.-.+.+||.... ...+.|||-.|.+|.
T Consensus 20 ~G~l~VTNlRiiW~s~~~~-~~NlSIgy~~i~~i~ 53 (55)
T smart00683 20 LGVFFVTNLRLVWHSDTNP-RFNISVGYLQITNVR 53 (55)
T ss_pred eeEEEEEeeEEEEEeCCCC-ceEEEEcceeEEEEE
Confidence 4999999999999999864 678999999998775
No 317
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=47.69 E-value=48 Score=34.06 Aligned_cols=39 Identities=15% Similarity=0.372 Sum_probs=33.2
Q ss_pred EEeeecccCCCCCeEeeEEEEEEe--cCCCCeEEEEEEecC
Q 001703 31 KSKSRILKNNSNPVWNEEFVFRVH--NIDDEELVVSVFQHN 69 (1024)
Q Consensus 31 ~~rT~v~~~t~nP~WnE~f~f~v~--~~~~~~L~v~V~d~d 69 (1024)
...|.+...+.+|.|+|++.+.++ ......|.|+.|+..
T Consensus 57 ~~~s~V~yh~k~P~f~dEiKI~LP~~l~~~hHLlFtFyHvs 97 (185)
T cd08697 57 SAYAAVLHHNQNPEFYDEIKIELPTQLHEKHHLLFTFYHVS 97 (185)
T ss_pred EEEEEEEEcCCCCccceeEEEecCCcCCCCeeEEEEEEeec
Confidence 478888888999999999999987 445678999999976
No 318
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=46.89 E-value=67 Score=33.06 Aligned_cols=40 Identities=10% Similarity=0.202 Sum_probs=32.3
Q ss_pred EEEeeecccCCCCCeEeEEEEEEeecC--CCCeEEEEEEecC
Q 001703 568 KTRTSSVQLQTCDPQWHDILEFDAMEE--PPSVLDVEVFDFD 607 (1024)
Q Consensus 568 ~~~kT~~~~~t~nP~WnE~f~f~~~~~--~~~~L~v~V~D~d 607 (1024)
....|.+..++.+|.|+|++.+.+... ....|.|+.++..
T Consensus 56 ~~~~s~V~yh~k~P~f~dEiKI~LP~~l~~~hHLlFtFyHvs 97 (185)
T cd08697 56 TSAYAAVLHHNQNPEFYDEIKIELPTQLHEKHHLLFTFYHVS 97 (185)
T ss_pred eEEEEEEEEcCCCCccceeEEEecCCcCCCCeeEEEEEEeec
Confidence 456888888999999999999986443 3458999999865
No 319
>PF11696 DUF3292: Protein of unknown function (DUF3292); InterPro: IPR021709 This eukaryotic family of proteins has no known function.
Probab=45.65 E-value=63 Score=39.31 Aligned_cols=98 Identities=15% Similarity=0.247 Sum_probs=63.1
Q ss_pred ceeeeeecccccccceeeeec----EEEEEeccC------------CCeEEEEEecccceeeEeccccccccCCC-cEEE
Q 001703 706 DFTCYLKRKMPLQGRLFLSAR----IVGFYANLF------------GNKTKFFFLWEDIEDIQILSPSLATVGSP-SLVI 768 (1024)
Q Consensus 706 ~~~c~~~~~~~~~G~lyis~~----~~cF~s~~~------------g~~~~~~i~~~di~~i~k~~~~~~~~~~~-~i~i 768 (1024)
.|.|.|+.+ .|.+||+.. .++|...-. ....-+.||..||.+++|..+ +|=. -+++
T Consensus 520 ~F~AR~~Gk---kG~v~I~ssa~~P~l~Ftt~~~~~~~d~~~~~~~~~~~~wsv~V~dI~elkKvgG----lGWK~KLvV 592 (642)
T PF11696_consen 520 EFPARYKGK---KGHVYIDSSATPPVLSFTTDKTSSLGDLRLEEREKGHPLWSVPVADIAELKKVGG----LGWKGKLVV 592 (642)
T ss_pred eeeeecCCc---cceEEEecCCCCcEEEEeccCccccccccccccccCceeeEEEhHHhhhhhhccc----ccceeeEEE
Confidence 478888774 499999943 788986511 235669999999999999873 2311 1222
Q ss_pred EEeccCCcccCCCccccCCCCceEEEEEeecChhHHHHHHHHH
Q 001703 769 ILWKGRGLDARHGAKSQDEEGRLRFYFQSFVSFNDASRTIMAL 811 (1024)
Q Consensus 769 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~sf~~rd~~~~~l~~~ 811 (1024)
=...|..=...++.|.-+..| ..|.++....||+.|+.|.++
T Consensus 593 GWa~g~kEv~DGL~I~g~~~g-~~y~lTA~~~RDeLFNRLiAm 634 (642)
T PF11696_consen 593 GWALGEKEVVDGLVIVGDEPG-QEYHLTAMPRRDELFNRLIAM 634 (642)
T ss_pred eeecCCcccccceEEeccCCC-CEEEEEecchHHHHHHHHHhc
Confidence 222211112233344413334 389999999999999999865
No 320
>PF04707 PRELI: PRELI-like family; InterPro: IPR006797 These proteins contain a conserved region found in the yeast YLR168C gene MSF1 product. The function of this protein is unknown, though it is thought to be involved in intra-mitochondrial protein sorting. GFP-tagged MSF1 localizes to mitochondria and is required for wild-type respiratory growth []. This region is also found in a number of other eukaryotic proteins. The PRELI/MSF1 domain is an eukaryotic protein module which occurs in stand-alone form in several proteins, including the human PRELI protein and the yeast MSF1 protein, and as an amino-terminal domain in an orthologous group of proteins typified by human SEC14L1, which is conserved in all animals. In this group of proteins, the PRELI/MSF1 domain co-occurs with the CRAL-TRIO (see PDOC50191 from PROSITEDOC) and the GOLD domains (see PDOC50866 from PROSITEDOC). The PRELI/MSF1 domain is approximately 170 residues long and is predicted to assume a globular alpha + beta fold with six beta strands and four alpha helices. It has been suggested that the PRELI/MSF1 domain may have a function associated with cellular membrane [].
Probab=45.12 E-value=1.7e+02 Score=29.13 Aligned_cols=71 Identities=21% Similarity=0.145 Sum_probs=55.5
Q ss_pred CCCCCCCceEEEEEEEEEecCCCCCccEEEEEEEEEEecc-cchhhhhhhhhHHhHHHHHHHHHHHHHHHHh
Q 001703 945 HDVPFDDHFRVHFRYEIEKSPLAHNACKCAIYIGISWLKS-TKFQQRITQNITEKFTHRLKEMIELVEREIL 1015 (1024)
Q Consensus 945 ~dVPygd~F~v~~r~~i~~~~~~~~~c~l~v~~~V~f~Ks-t~~K~~Ie~~~~~g~~~~~~~~~~~~~~~i~ 1015 (1024)
.++=+.+.+.|+.+...++.+.+++.|.+.-.+.|.-.++ ..|.+.||+-+.+..++.++.=.+.++.-++
T Consensus 81 ~Nls~~~~~~v~E~~~Y~~~p~np~~T~~~q~a~i~~~~~~~~~~~~iE~~~~~~f~~na~kgr~~~e~vi~ 152 (157)
T PF04707_consen 81 RNLSFSSFLSVEETCVYKPHPDNPNWTLFKQEATISIKGSFSGFSSRIEKFSVSRFKSNAKKGREGMEWVIK 152 (157)
T ss_pred EEcccCceeEEEEEEEEEECCCCCCcceEEEEEEEEEeCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567899999999999999987789999999999996553 4499999998888777766655555444443
No 321
>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=43.65 E-value=7.2 Score=47.06 Aligned_cols=96 Identities=16% Similarity=0.226 Sum_probs=61.9
Q ss_pred CCCcEEEEEECCeE-EeeecccCCCCCeEeeEEEEEEecCCCCeEEEEEEecCCCCCCCCCCCCeeEEEEEeCccccccC
Q 001703 18 AKDSYVKVQIGKHK-SKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAED 96 (1024)
Q Consensus 18 ~~DPyv~v~l~~~~-~rT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~~~f~~~~d~~lG~~~i~L~~l~~~~ 96 (1024)
..+||+-|.+.-.. ..+.+.+.+..|.|+++|..++ ..+..+.+.|+.... ...+.+..++.+-..++...
T Consensus 27 al~~y~~v~vk~~~~~~~~~~~~~~~~~~~~~F~~~v--~~~~~~~i~v~~~~~-----~~~~~~~a~~~~~~e~~k~~- 98 (694)
T KOG0694|consen 27 ALQPYLAVELKVKQGAENMTKVELRIPELRETFHVEV--VAGGAKNIIVLLKSP-----DPKALSEAQLSLQEESQKLL- 98 (694)
T ss_pred hhhhhheeccceeecccccCCCCCCCchhhhheeeee--ecCCceEEEEEecCC-----cchhhHHHhHHHHHHHHHHH-
Confidence 46899988886433 4666678899999999999997 567777888887651 22333333333332232221
Q ss_pred CCCCCCEEEEeecCCCCCCCCccccEEEEEEEEEec
Q 001703 97 NHMLPPTWFSLETPKTRKFTNKDCGKILLTISLNGK 132 (1024)
Q Consensus 97 ~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~~~~ 132 (1024)
......|..++ ..|.++..+.+...
T Consensus 99 -~~~~~~w~~~~----------~~g~~~~~~~~~~~ 123 (694)
T KOG0694|consen 99 -ALEQRLWVLIE----------ELGTLLKPAALTGT 123 (694)
T ss_pred -hhhhhhccccc----------cccceeeeecccCc
Confidence 12345688766 45888888777654
No 322
>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function. It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.
Probab=42.45 E-value=76 Score=29.52 Aligned_cols=93 Identities=14% Similarity=0.182 Sum_probs=45.7
Q ss_pred EEEEEECC-EEEeeecccCCCCCeEeEEEEEEeecCC-------CCeEEEEEEecCCCCCCCccceEEEEEcccccCCC-
Q 001703 560 YVVFTCNG-KTRTSSVQLQTCDPQWHDILEFDAMEEP-------PSVLDVEVFDFDGPFDQATSLGHAEINFLKHTSTE- 630 (1024)
Q Consensus 560 yv~v~~~~-~~~kT~~~~~t~nP~WnE~f~f~~~~~~-------~~~L~v~V~D~d~~~~~dd~lG~~~i~l~~l~~~~- 630 (1024)
||.+.+-. +...|.++. +.+|.+|-+-.|.|..+. ...+.|+++..-. .....+|.+.|++..+....
T Consensus 2 Fct~dFydfEtq~Tpvv~-G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~g--~d~~tla~~~i~l~~ll~~~~ 78 (107)
T PF11618_consen 2 FCTYDFYDFETQTTPVVR-GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQALG--SDFETLAAGQISLRPLLESNG 78 (107)
T ss_dssp EEEE-STT---EE---EE-SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE-S--S-EEEEEEEEE--SHHHH--S
T ss_pred EEEEEeeceeeeccccee-CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeecc--CCeEEEEEEEeechhhhcCCC
Confidence 44444443 344555554 899999998888874432 4579999987554 34689999999999975332
Q ss_pred -ccceEEEccccccccccceeEEEEEE
Q 001703 631 -LADMWVSLEGKLAQSAQSKVHLRIFL 656 (1024)
Q Consensus 631 -~~~~w~~L~~~~~~~~~g~l~l~~~~ 656 (1024)
....-..|-+..+. .-|.|...+.+
T Consensus 79 ~~i~~~~~l~g~~~~-~~g~l~y~~rl 104 (107)
T PF11618_consen 79 ERIHGSATLVGVSGE-DFGTLEYWIRL 104 (107)
T ss_dssp --EEEEEEE-BSSS--TSEEEEEEEEE
T ss_pred ceEEEEEEEeccCCC-eEEEEEEEEEe
Confidence 34445566554433 45666555544
No 323
>KOG2419 consensus Phosphatidylserine decarboxylase [Lipid transport and metabolism]
Probab=39.97 E-value=6.9 Score=46.24 Aligned_cols=57 Identities=11% Similarity=0.109 Sum_probs=42.5
Q ss_pred CCCcEEEEEECCEEEeeecccCCCCCeEeEEEEEEeecC-CCCeEEEEEEecCCCCCCCc
Q 001703 556 LSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAMEE-PPSVLDVEVFDFDGPFDQAT 614 (1024)
Q Consensus 556 ~~DPyv~v~~~~~~~kT~~~~~t~nP~WnE~f~f~~~~~-~~~~L~v~V~D~d~~~~~dd 614 (1024)
..+|+++..++.+.++|+....+.+|+|||. ++++..- ....|...|.+++. .+-+|
T Consensus 304 ~~~~~~itsf~~~~frt~~~~~~e~piyNe~-~~E~~~Fqsn~~l~~kiv~~~~-~~lnd 361 (975)
T KOG2419|consen 304 KDKWLAITSFGEQTFRTEISDDTEKPIYNED-EREDSDFQSNRYLGNKIVGYCE-LDLND 361 (975)
T ss_pred CCCchheeecchhhhhhhhhccccccccccc-ccccccchhhHHHhhhcccccc-ccccc
Confidence 4689999999999999999999999999997 6653222 23456666666665 44444
No 324
>cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins. This family includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and related domains, such as the START domain of the Arabidopsis homeobox protein GLABRA 2. The mammalian STARDs are grouped into 8 subfamilies. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some members of this family, specific lipids that bind in this pocket are known; these include cholesterol (STARD1/STARD3/ STARD4/STARD5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2/ STARD7/STARD10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). The START domain is found either alone or in association with other domains. Mammalian STARDs participate in the control of various cellular pro
Probab=39.35 E-value=4.1e+02 Score=26.62 Aligned_cols=51 Identities=18% Similarity=0.180 Sum_probs=34.3
Q ss_pred CCCcEEEEEEEecCCCCCC-CceEEEEE---EEEEecCCCCCccEEEEEEEEEEecc
Q 001703 932 SGEGWIVNEVMSLHDVPFD-DHFRVHFR---YEIEKSPLAHNACKCAIYIGISWLKS 984 (1024)
Q Consensus 932 ~~~~~vv~~~~~~~dVPyg-d~F~v~~r---~~i~~~~~~~~~c~l~v~~~V~f~Ks 984 (1024)
++..+++......+.+|-. ++-+.++. |+|++.+ +++|++.....++..++
T Consensus 113 ~~~~~~~~~Si~~~~~p~~~~~vR~~~~~~~~~i~~~~--~~~~~vt~~~~~D~~g~ 167 (193)
T cd00177 113 DGTYVIVSKSVDHDSHPKEKGYVRAEIKLSGWIIEPLD--PGKTKVTYVLQVDPKGS 167 (193)
T ss_pred CCeEEEEEeecCCCCCCCCCCcEEEEEEccEEEEEECC--CCCEEEEEEEeeCCCCC
Confidence 3444555544443446655 55555543 8888885 68999999999999775
No 325
>cd07826 SRPBCC_CalC_Aha1-like_9 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=37.02 E-value=3.9e+02 Score=25.74 Aligned_cols=137 Identities=8% Similarity=0.051 Sum_probs=69.3
Q ss_pred ccccccCCHHhHhhhccCChhHHHHHHHhCCcc-eeecccccCCCCceEEEEEEEEcccccCCCceecEEEEEeecCCCC
Q 001703 856 YNAELPISVKALMEMFDGGKLEHQVMEKSGCHN-YVTTPWDLVKPGVCERHLSYRFNRHVSIFGGEVTCTQQKSPLASGE 934 (1024)
Q Consensus 856 ~~~~~~~~~~~~f~lf~~~~~~~~~~~~~~~~~-i~~~~W~~~~~~~~~R~~sy~~n~~~~~~~~~~~~~Q~~~~~~~~~ 934 (1024)
++..|++|++.+|+.|.++....+.+-..+..- ....+|. .|+. +.|....+-+ ......-.+....+..
T Consensus 4 i~r~~~ap~e~Vw~a~Tdpe~l~~W~~p~~~~~~~~~~d~r---~GG~---~~~~~~~~~g---~~~~~~g~~~ei~p~~ 74 (142)
T cd07826 4 ITREFDAPRELVFRAHTDPELVKRWWGPRGLTMTVCECDIR---VGGS---YRYVHRAPDG---EEMGFHGVYHEVTPPE 74 (142)
T ss_pred EEEEECCCHHHHHHHhCCHHHHhhccCCCCCcceEEEEecc---CCCE---EEEEEECCCC---CEecceEEEEEEcCCC
Confidence 456799999999999988877666654333111 1122333 2332 3443211111 1111122233334445
Q ss_pred cEEEEEEEecCCCCCCCceEEEEEEEEEecCCCCCccEEEEEEEEEEecccchhhhhhhhhHHhHHHHHHHHHHHHHHHH
Q 001703 935 GWIVNEVMSLHDVPFDDHFRVHFRYEIEKSPLAHNACKCAIYIGISWLKSTKFQQRITQNITEKFTHRLKEMIELVEREI 1014 (1024)
Q Consensus 935 ~~vv~~~~~~~dVPygd~F~v~~r~~i~~~~~~~~~c~l~v~~~V~f~Kst~~K~~Ie~~~~~g~~~~~~~~~~~~~~~i 1014 (1024)
.++..-.. .+.| .. .....|.|+..+ .+|+|.+. ..|... ...+.-...+..+-+...++.|.+++
T Consensus 75 ~l~~t~~~--~~~~-~~--~s~v~~~l~~~~---~gT~l~l~--~~~~~~----~~~~~~~~~~~~~Gw~~~l~~L~~~l 140 (142)
T cd07826 75 RIVQTEEF--EGLP-DG--VALETVTFTELG---GRTRLTAT--SRYPSK----EARDGVLASGMEEGMEESYDRLDELL 140 (142)
T ss_pred EEEEEeEe--cCCC-CC--ceEEEEEEEECC---CCEEEEEE--EEeCCH----HHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 55554222 2334 22 245567777755 67999886 445321 11122344555666666677666665
Q ss_pred h
Q 001703 1015 L 1015 (1024)
Q Consensus 1015 ~ 1015 (1024)
.
T Consensus 141 ~ 141 (142)
T cd07826 141 A 141 (142)
T ss_pred h
Confidence 3
No 326
>cd08910 START_STARD2-like Lipid-binding START domain of mammalian STARD2 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may have a mitochondrial function.
Probab=36.94 E-value=5.1e+02 Score=27.05 Aligned_cols=142 Identities=16% Similarity=0.089 Sum_probs=74.6
Q ss_pred ccccc-CCHHhHhhhccCChhHHHHHHHhCCcceeecccccCCCCceEEEEEEE-Eccc--ccCCCceecEEEEEe-ecC
Q 001703 857 NAELP-ISVKALMEMFDGGKLEHQVMEKSGCHNYVTTPWDLVKPGVCERHLSYR-FNRH--VSIFGGEVTCTQQKS-PLA 931 (1024)
Q Consensus 857 ~~~~~-~~~~~~f~lf~~~~~~~~~~~~~~~~~i~~~~W~~~~~~~~~R~~sy~-~n~~--~~~~~~~~~~~Q~~~-~~~ 931 (1024)
..+|+ ++++.|++++.|.++..+....... -+.. ...+ .+ +.|. ++.| +++. .....+... ...
T Consensus 54 ~~~~~~~s~~~~~~~l~D~~~r~~Wd~~~~~-~~~~-----~~~~--~~-i~y~~~k~PwPvs~R--D~V~~r~~~~~~~ 122 (207)
T cd08910 54 FGVLEDCSPSLLADVYMDLEYRKQWDQYVKE-LYEK-----ECDG--ET-VIYWEVKYPFPLSNR--DYVYIRQRRDLDV 122 (207)
T ss_pred EEEEcCCCHHHHHHHHhCHHHHHHHHHHHHh-heee-----cCCC--CE-EEEEEEEcCCCCCCc--eEEEEEEeccccC
Confidence 34576 8999999988777765555444321 0111 1112 23 3444 3222 3322 222222221 112
Q ss_pred CCC-cEEE-EEEEecCCCCCCCceE----EEEEEEEEecCCCCCccEEEEEEEEEEecccchhhhhhhhhHHhHHHHHHH
Q 001703 932 SGE-GWIV-NEVMSLHDVPFDDHFR----VHFRYEIEKSPLAHNACKCAIYIGISWLKSTKFQQRITQNITEKFTHRLKE 1005 (1024)
Q Consensus 932 ~~~-~~vv-~~~~~~~dVPygd~F~----v~~r~~i~~~~~~~~~c~l~v~~~V~f~Kst~~K~~Ie~~~~~g~~~~~~~ 1005 (1024)
++. .++| ......|.+|-.+-|. ....|.|++.+ +++|++...+..+-- ...=+.++..-+.++.-..++.
T Consensus 123 ~~~~~~iv~~~s~~~p~~P~~~~~VRv~~~~~~~~i~p~~--~~~t~i~~~~~~DPg-G~IP~wlvN~~~~~~~~~~l~~ 199 (207)
T cd08910 123 EGRKIWVILARSTSLPQLPEKPGVIRVKQYKQSLAIESDG--KKGSKVFMYYFDNPG-GMIPSWLINWAAKNGVPNFLKD 199 (207)
T ss_pred CCCeEEEEEecCCCCCCCCCCCCCEEEEEEEEEEEEEeCC--CCceEEEEEEEeCCC-CcchHHHHHHHHHHhhHHHHHH
Confidence 333 2443 3444457888765554 56778888765 578999999988873 3333444445555555566665
Q ss_pred HHHHHHH
Q 001703 1006 MIELVER 1012 (1024)
Q Consensus 1006 ~~~~~~~ 1012 (1024)
|-+...+
T Consensus 200 l~ka~~~ 206 (207)
T cd08910 200 MQKACQN 206 (207)
T ss_pred HHHHHhc
Confidence 5555443
No 327
>PF10604 Polyketide_cyc2: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR019587 This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis. It also includes other proteins of the START superfamily []. ; PDB: 3QRZ_C 3CNW_A 3P9V_A 3OQU_B 3NEF_B 3JRQ_B 3KAY_A 3JRS_A 3KDJ_A 3NMN_C ....
Probab=36.33 E-value=3.6e+02 Score=25.15 Aligned_cols=101 Identities=11% Similarity=0.029 Sum_probs=50.1
Q ss_pred cccccCCHHhHhhhccCChhHHHHHHHhCCcceeecccccCCCCceEEEEEEEEcccccCCCceecEEEEEeecCC-CCc
Q 001703 857 NAELPISVKALMEMFDGGKLEHQVMEKSGCHNYVTTPWDLVKPGVCERHLSYRFNRHVSIFGGEVTCTQQKSPLAS-GEG 935 (1024)
Q Consensus 857 ~~~~~~~~~~~f~lf~~~~~~~~~~~~~~~~~i~~~~W~~~~~~~~~R~~sy~~n~~~~~~~~~~~~~Q~~~~~~~-~~~ 935 (1024)
+..++++++.+|+++.+-.-+.++ ...+....|... .+. .+...+.. .+. ..+..+- ....+ +..
T Consensus 7 ~~~v~a~~e~V~~~l~d~~~~~~w-----~~~~~~~~~~~~-~~~-~~~~~~~~---~g~--~~~~~~i--~~~~~~~~~ 72 (139)
T PF10604_consen 7 SIEVPAPPEAVWDLLSDPENWPRW-----WPGVKSVELLSG-GGP-GTERTVRV---AGR--GTVREEI--TEYDPEPRR 72 (139)
T ss_dssp EEEESS-HHHHHHHHTTTTGGGGT-----STTEEEEEEEEE-CST-EEEEEEEE---CSC--SEEEEEE--EEEETTTTE
T ss_pred EEEECCCHHHHHHHHhChhhhhhh-----hhceEEEEEccc-ccc-ceeEEEEe---ccc--cceeEEE--EEecCCCcE
Confidence 346899999999987664433332 222333333321 111 22233321 222 2222222 22223 444
Q ss_pred EEEEEEEecCCCCCCCceEEEEEEEEEecCCCCCccEEEEEEEEEE
Q 001703 936 WIVNEVMSLHDVPFDDHFRVHFRYEIEKSPLAHNACKCAIYIGISW 981 (1024)
Q Consensus 936 ~vv~~~~~~~dVPygd~F~v~~r~~i~~~~~~~~~c~l~v~~~V~f 981 (1024)
+....+ ..|+. ....+|.+.+.+ .+|+|.....+..
T Consensus 73 ~~~~~~----~~~~~---~~~~~~~~~~~~---~gt~v~~~~~~~~ 108 (139)
T PF10604_consen 73 ITWRFV----PSGFT---NGTGRWRFEPVG---DGTRVTWTVEFEP 108 (139)
T ss_dssp EEEEEE----SSSSC---EEEEEEEEEEET---TTEEEEEEEEEEE
T ss_pred EEEEEE----eccee---EEEEEEEEEEcC---CCEEEEEEEEEEE
Confidence 444432 22333 468889999988 3488887777776
No 328
>PF07162 B9-C2: Ciliary basal body-associated, B9 protein; InterPro: IPR010796 Proteins in this entry include the MSK1 protein (Q9NXB0 from SWISSPROT) and other known or predicted flagellar basal body proteome components [] or cilia-containing species. Although the function is unknown, a cilia-specific role has been suggested for the poorly characterised B9 domain [, , ]. Mutations in MSK1 have been shown to cause Meckel syndrome type 1, a severe foetal development disorder that has been reported in most populations.
Probab=33.46 E-value=4.5e+02 Score=26.44 Aligned_cols=79 Identities=15% Similarity=0.223 Sum_probs=56.0
Q ss_pred EEEEEEEeecCCCCCcEEEEEEC----------Ce-EEeeecccC-----CCCCeEeeEEEEEEe--cCCC-CeEEEEEE
Q 001703 6 LYVYVLQGQDLLAKDSYVKVQIG----------KH-KSKSRILKN-----NSNPVWNEEFVFRVH--NIDD-EELVVSVF 66 (1024)
Q Consensus 6 L~V~V~~Ar~L~~~DPyv~v~l~----------~~-~~rT~v~~~-----t~nP~WnE~f~f~v~--~~~~-~~L~v~V~ 66 (1024)
+.=.|..|.+....+-||+-++. .. ...|.+.+. +..-.||.-|.+.+. .+.+ +.|.|+||
T Consensus 4 v~G~I~~a~~f~~~~l~~~y~~~~g~~W~~~~g~~~~G~Tq~~~~~~~~~~~~~~f~~P~d~~~~~~~~~gwP~L~l~V~ 83 (168)
T PF07162_consen 4 VIGEIESAEGFEEDNLYCRYQLVHGPDWKLISGLSLEGQTQISKSSSYGNDDVAVFNHPFDLHFKSTNPQGWPQLVLQVY 83 (168)
T ss_pred EEEEEEEEECCCCCCEEEEEEEEeCCCeEECCCCcceEEcceeecCcccCCCceEEeccEEEEEEeCCCCCCceEEEEEE
Confidence 34468889988777789998772 23 466666643 334678887777754 3333 89999999
Q ss_pred ecCCCCCCCCCCCCeeEEEEEeC
Q 001703 67 QHNDDSGLFGSSGELMGRVRVPV 89 (1024)
Q Consensus 67 d~d~~~~f~~~~d~~lG~~~i~L 89 (1024)
..| ..+++.+.|-..+.|
T Consensus 84 ~~D-----~~gr~~~~GYG~~~l 101 (168)
T PF07162_consen 84 SLD-----SWGRDRVEGYGFCHL 101 (168)
T ss_pred EEc-----ccCCeEEeEEeEEEe
Confidence 999 467888988877655
No 329
>PF06219 DUF1005: Protein of unknown function (DUF1005); InterPro: IPR010410 This is a family of plant proteins with undetermined function.
Probab=33.02 E-value=1.4e+02 Score=34.25 Aligned_cols=113 Identities=17% Similarity=0.304 Sum_probs=63.5
Q ss_pred CCCcEEEEEECCeEEeeecccC----CCCC-eE---eeEEEEE---Ee---cC-----CCCeEEEEEEecCCCCCCCC-C
Q 001703 18 AKDSYVKVQIGKHKSKSRILKN----NSNP-VW---NEEFVFR---VH---NI-----DDEELVVSVFQHNDDSGLFG-S 77 (1024)
Q Consensus 18 ~~DPyv~v~l~~~~~rT~v~~~----t~nP-~W---nE~f~f~---v~---~~-----~~~~L~v~V~d~d~~~~f~~-~ 77 (1024)
.+..||+|.|.+--.+|..+.- +.+| .- --.|.++ +. .. ....|+|.||-=.....=-+ .
T Consensus 35 sspCfC~IrL~~fP~Qta~vPLi~~~~~~~p~~~~~Aa~F~Ld~s~l~~l~~~~~f~~~~~~L~i~VY~Gr~G~tCGv~~ 114 (460)
T PF06219_consen 35 SSPCFCEIRLKGFPSQTAPVPLISSSEPEPPDSHSLAASFHLDKSDLRRLLAKPCFYSPRPCLEISVYTGRRGSTCGVGN 114 (460)
T ss_pred CCCeEEEEecCCCCccceeeeeccCCCCCCCCcCCcceEEecCHHHHHHHhCCCccccCCceEEEEEEECCCCCcccccc
Confidence 4577999999876655555432 1111 11 1233333 10 01 11579999997331100001 3
Q ss_pred CCCeeEEEEEeCccccccCCC--CCCCEEEEeecCCCCCCCCccccEEEEEEEEEec
Q 001703 78 SGELMGRVRVPVSSIAAEDNH--MLPPTWFSLETPKTRKFTNKDCGKILLTISLNGK 132 (1024)
Q Consensus 78 ~d~~lG~~~i~L~~l~~~~~~--~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~~~~ 132 (1024)
+..+||.+.|||. +...+.+ ..+..|..+.+...++ ......+|||.+..++.
T Consensus 115 ~~klLG~v~vpld-l~~ae~kp~v~hnGWi~iGk~~~~~-~~~~~aeLHl~Vr~EpD 169 (460)
T PF06219_consen 115 SGKLLGKVRVPLD-LKWAEGKPVVFHNGWISIGKNKQGS-GKSPSAELHLVVRAEPD 169 (460)
T ss_pred cceEEEEEEEEec-cccccCCeeEEEccceecCCCCCCC-CCCCcceEEEEEeccCC
Confidence 5679999999986 4433222 3456799998444322 12357899999998875
No 330
>KOG0904 consensus Phosphatidylinositol 3-kinase catalytic subunit (p110) [Signal transduction mechanisms]
Probab=32.82 E-value=76 Score=39.68 Aligned_cols=67 Identities=16% Similarity=0.223 Sum_probs=48.1
Q ss_pred CcEEEEEEEEeecCC---CCCcEEEEEE----CCeE----EeeecccCCCCCeEeeEEEEEEe---cCCCCeEEEEEEec
Q 001703 3 STRLYVYVLQGQDLL---AKDSYVKVQI----GKHK----SKSRILKNNSNPVWNEEFVFRVH---NIDDEELVVSVFQH 68 (1024)
Q Consensus 3 ~~~L~V~V~~Ar~L~---~~DPyv~v~l----~~~~----~rT~v~~~t~nP~WnE~f~f~v~---~~~~~~L~v~V~d~ 68 (1024)
+..++|+++++.++. ..|-+|.|.. |.+. ..|.-+..+.+|.||+...|++. -+....|.+.||..
T Consensus 342 ~~~frI~l~~is~~n~~~t~~~kV~V~~~lyhG~e~Lc~~~sTs~v~~~~~~~Wn~~leFDI~i~DLPr~ArLc~~i~~v 421 (1076)
T KOG0904|consen 342 DRPFRIKLVGISKVNLPETVDLKVFVEAGLYHGTEVLCKTRSTSEVPGCSFPLWNEWLEFDIYIKDLPRMARLCLAIYAV 421 (1076)
T ss_pred CCceEEEEeeccccCCCcccceEEEEEEEEEECCeehhcccccCCCCCccchhccceeEeeeecCCCChhhhheeeeeEe
Confidence 456888999888766 5566777665 3433 44555555889999999999976 35557888888875
Q ss_pred C
Q 001703 69 N 69 (1024)
Q Consensus 69 d 69 (1024)
-
T Consensus 422 ~ 422 (1076)
T KOG0904|consen 422 K 422 (1076)
T ss_pred e
Confidence 3
No 331
>PF01060 DUF290: Transthyretin-like family; InterPro: IPR001534 This new apparently nematode-specific protein family has been called family 2 []. The proteins show weak similarity to transthyretin (formerly called prealbumin) which transports thyroid hormones. The specific function of this protein is unknown.; GO: 0005615 extracellular space
Probab=32.15 E-value=1.6e+02 Score=25.61 Aligned_cols=40 Identities=23% Similarity=0.360 Sum_probs=30.1
Q ss_pred cCCCCeEEEEEEecCCCCCCCccceEEEEEcccccCCCccceEEEccccc
Q 001703 593 EEPPSVLDVEVFDFDGPFDQATSLGHAEINFLKHTSTELADMWVSLEGKL 642 (1024)
Q Consensus 593 ~~~~~~L~v~V~D~d~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~~~ 642 (1024)
..|....+|++||.|. +..|++|+.+..+ .+..|.|.+..
T Consensus 8 ~~P~~~~~V~L~e~d~-~~~Ddll~~~~Td---------~~G~F~l~G~~ 47 (80)
T PF01060_consen 8 GKPAKNVKVKLWEDDY-FDPDDLLDETKTD---------SDGNFELSGST 47 (80)
T ss_pred CccCCCCEEEEEECCC-CCCCceeEEEEEC---------CCceEEEEEEc
Confidence 4456678899999998 7899999987762 34567777643
No 332
>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38), STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP), and STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. Some, including STARD12, -and -13, also have an N-terminal SAM (sterile alpha motif) domain; these have a SAM-RhoGAP-START domain organization. This subfamily is involved in cancer development. A large spectrum of cancers have dysregul
Probab=30.39 E-value=6.3e+02 Score=26.11 Aligned_cols=50 Identities=12% Similarity=0.116 Sum_probs=34.2
Q ss_pred CcEEEE-EEEec-CCCCCCCce---EEEEEEEEEecCCCCCccEEEEEEEEEEecc--cc
Q 001703 934 EGWIVN-EVMSL-HDVPFDDHF---RVHFRYEIEKSPLAHNACKCAIYIGISWLKS--TK 986 (1024)
Q Consensus 934 ~~~vv~-~~~~~-~dVPygd~F---~v~~r~~i~~~~~~~~~c~l~v~~~V~f~Ks--t~ 986 (1024)
..++|. .+... ..+|= ++. ...+.|.|++.+ +++|+|.-.++++..++ .|
T Consensus 118 g~~~i~~~Sv~~~~~~p~-g~VR~~~~~~g~~i~p~~--~~~t~vty~~~~Dp~G~iP~w 174 (197)
T cd08869 118 GACVLVETSVEHTEPVPL-GGVRAVVLASRYLIEPCG--SGKSRVTHICRVDLRGRSPEW 174 (197)
T ss_pred CcEEEEEECCcCCCCCCC-CCEEEEEEeeeEEEEECC--CCCeEEEEEEEECCCCCCCce
Confidence 345544 33322 25665 544 445789999987 58999999999999777 55
No 333
>COG4687 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.20 E-value=55 Score=30.17 Aligned_cols=36 Identities=14% Similarity=0.428 Sum_probs=27.6
Q ss_pred cccceeeeecEEEEEeccCCCeEEEEEecccceeeEe
Q 001703 717 LQGRLFLSARIVGFYANLFGNKTKFFFLWEDIEDIQI 753 (1024)
Q Consensus 717 ~~G~lyis~~~~cF~s~~~g~~~~~~i~~~di~~i~k 753 (1024)
-.|++.|...-+-||-+.- .+.-+.|||++|..|..
T Consensus 23 ~~GkiliGDkgfEFYn~~n-v~k~iqipWs~i~~v~v 58 (122)
T COG4687 23 EYGKILIGDKGFEFYNDRN-VEKFIQIPWSEINEVDV 58 (122)
T ss_pred hcCeEEEcccceeecCCCC-hhheeEecHHHhheehe
Confidence 4599999999999976543 35568899999986653
No 334
>PF12068 DUF3548: Domain of unknown function (DUF3548); InterPro: IPR021935 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes and is typically between 184 to 216 amino acids in length. The domain is found associated with PF00566 from PFAM and at the N terminus of GYP7 proteins.
Probab=29.66 E-value=57 Score=34.36 Aligned_cols=35 Identities=37% Similarity=0.471 Sum_probs=29.6
Q ss_pred EEEEEecccceeeEeccccccccCCCcEEEEEeccCCc
Q 001703 739 TKFFFLWEDIEDIQILSPSLATVGSPSLVIILWKGRGL 776 (1024)
Q Consensus 739 ~~~~i~~~di~~i~k~~~~~~~~~~~~i~i~~~~~~~~ 776 (1024)
-.|.+|+.||.+|++.++.+ |.+.|+|+++.|..+
T Consensus 112 ~aFsv~lsdl~Si~~~~p~~---G~~~lv~~~kdG~~~ 146 (213)
T PF12068_consen 112 YAFSVPLSDLKSIRVSKPSL---GWWYLVFILKDGTSL 146 (213)
T ss_pred eEEEEEhhheeeEEecCCCC---CceEEEEEecCCCcc
Confidence 36889999999999999765 778899999987655
No 335
>KOG4471 consensus Phosphatidylinositol 3-phosphate 3-phosphatase myotubularin MTM1 [Lipid transport and metabolism; Intracellular trafficking, secretion, and vesicular transport]
Probab=28.98 E-value=1.7e+02 Score=35.15 Aligned_cols=67 Identities=19% Similarity=0.205 Sum_probs=51.5
Q ss_pred cccccc-CCCccccccceeeeeecccccccceeeeecEEEEEeccCCCeEEEEEecccceeeEecccccc
Q 001703 691 FQKLFA-LPPEEFLIKDFTCYLKRKMPLQGRLFLSARIVGFYANLFGNKTKFFFLWEDIEDIQILSPSLA 759 (1024)
Q Consensus 691 f~~~f~-l~~~e~l~~~~~c~~~~~~~~~G~lyis~~~~cF~s~~~g~~~~~~i~~~di~~i~k~~~~~~ 759 (1024)
....|. ||.+......|.|-+.. ...|.|+||.-.|.|.+.--+..--+.+||.=|..|+|..++.+
T Consensus 30 ~~~~~~~L~GE~i~~~~y~c~f~G--~~~g~l~lsNyRl~fks~~t~~~~~~~VPLg~Ie~vek~~~~~~ 97 (717)
T KOG4471|consen 30 LQVPFPLLPGESIIDEKYICPFLG--AVDGTLALSNYRLYFKSKETDPPFVLDVPLGVIERVEKRGGATS 97 (717)
T ss_pred ccCcccccCCcccccceecccccc--cccceEEeeeeEEEEEeccCCCceeEeechhhhhhhhhcCcccc
Confidence 445565 55555555667787766 57799999999999998877666678899999999999886654
No 336
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]
Probab=26.94 E-value=87 Score=39.41 Aligned_cols=103 Identities=14% Similarity=0.226 Sum_probs=71.9
Q ss_pred CCcEEEEEECCeE-EeeecccCC-CCCeEeeEEEEEEecCCCCeEEEEEEecCCCCCCCCCCCCeeEEEEEeCccccccC
Q 001703 19 KDSYVKVQIGKHK-SKSRILKNN-SNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAED 96 (1024)
Q Consensus 19 ~DPyv~v~l~~~~-~rT~v~~~t-~nP~WnE~f~f~v~~~~~~~L~v~V~d~d~~~~f~~~~d~~lG~~~i~L~~l~~~~ 96 (1024)
.++|+.+.+.... .+|....+. .+|.|.+.|...+ ......+.+.+-+.+ ..+....+|.+.+|...+..+
T Consensus 138 ~e~Ylt~~l~~~~~~~t~~~~~f~e~s~~~f~~~~~~-~h~~g~v~~~~~~~~-----~~G~s~~w~~v~~s~~~~~~~- 210 (887)
T KOG1329|consen 138 LENYLTVVLHKARYRRTHVIYEFLENSRWSFSFDIGF-AHKAGYVIFRVKGAR-----VPGWSKRWGRVKISFLQYCSG- 210 (887)
T ss_pred ccchheeeechhhhhchhhhhcccccchhhhhccccc-cccccEEEEeecCCc-----cccceeEEEEeccchhhhhcc-
Confidence 4889999987544 777777776 8999999997766 466677888887777 244588999999999888774
Q ss_pred CCCCCCEEEEeecCCCCCCCCccccEEEEEEEEEec
Q 001703 97 NHMLPPTWFSLETPKTRKFTNKDCGKILLTISLNGK 132 (1024)
Q Consensus 97 ~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~~~~ 132 (1024)
.....|+++..... +. ....-.+.+.+.|.+.
T Consensus 211 --~~~~~~~~Il~~d~-~~-~~~~~~~~~~~~~~~~ 242 (887)
T KOG1329|consen 211 --HRIGGWFPILDNDG-KP-HQKGSNESLRLGFTPM 242 (887)
T ss_pred --ccccceeeeeccCC-cc-ccCCcccceEEeeEee
Confidence 34677999873322 21 1122235666666654
No 337
>PF10409 PTEN_C2: C2 domain of PTEN tumour-suppressor protein; InterPro: IPR014020 Tensins constitute an eukaryotic family of lipid phosphatases that are defined by the presence of two adjacent domains: a lipid phosphatase domain and a C2-like domain. The tensin-type C2 domain has a structure similar to the classical C2 domain (see IPR000008 from INTERPRO) that mediates the Ca2+-dependent membrane recruitment of several signalling proteins. However the tensin-type C2 domain lacks two of the three conserved loops that bind Ca2+, and in this respect it is similar to the C2 domains of PKC-type [, ]. The tensin-type C2 domain can bind phopholipid membranes in a Ca2+ independent manner []. In the tumour suppressor protein PTEN, the best characterised member of the family, the lipid phosphatase domain was shown to specifically dephosphorylate the D3 position of the inositol ring of the lipid second messenger, phosphatydilinositol-3-4-5-triphosphate (PIP3). The lipid phosphatase domain contains the signature motif HCXXGXXR present in the active sites of protein tyrosine phosphatases (PTPs) and dual specificity phosphatases (DSPs). Furthermore, two invariant lysines are found only in the tensin-type phosphatase motif (HCKXGKXR) and are suspected to interact with the phosphate group at position D1 and D5 of the inositol ring [, ]. The C2 domain is found at the C terminus of the tumour suppressor protein PTEN (phosphatidyl-inositol triphosphate phosphatase). This domain may include a CBR3 loop, indicating a central role in membrane binding. This domain associates across an extensive interface with the N-terminal phosphatase domain DSPc suggesting that the C2 domain productively positions the catalytic part of the protein on the membrane. The crystal structure of the PTEN tumour suppressor has been solved []. The lipid phosphatase domain has a structure similar to the dual specificity phosphatase (see IPR000387 from INTERPRO). However, PTEN has a larger active site pocket that could be important to accommodate PI(3,4,5)P3. Proteins known to contain a phosphatase and a C2 tensin-type domain are listed below: Tensin, a focal-adhesion molecule that binds to actin filaments. It may be involved in cell migration, cartilage development and in linking signal transduction pathways to the cytoskeleton. Phosphatase and tensin homologue deleted on chromosome 10 protein (PTEN). It antagonizes PI 3-kinase signalling by dephosphorylating the 3-position of the inositol ring of PI(3,4,5)P3 and thus inactivates downstream signalling. It plays major roles both during development and in the adult to control cell size, growth, and survival. Auxilin. It binds clathrin heavy chain and promotes its assembly into regular cages. Cyclin G-associated kinase or auxilin-2. It is a potential regulator of clathrin-mediated membrane trafficking. ; GO: 0005515 protein binding; PDB: 3N0A_A 1D5R_A 3V0D_B 3V0H_B 3V0G_A 3V0F_B 3V0J_A 3V0I_A 3AWE_B 3AWG_C ....
Probab=26.78 E-value=5.6e+02 Score=24.39 Aligned_cols=91 Identities=12% Similarity=0.016 Sum_probs=53.4
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECCEEE-eeecccCCCCCeEeE--EEEEEeecCCCCeEEEEEEecCCCCCCC
Q 001703 537 VLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTR-TSSVQLQTCDPQWHD--ILEFDAMEEPPSVLDVEVFDFDGPFDQA 613 (1024)
Q Consensus 537 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~~-kT~~~~~t~nP~WnE--~f~f~~~~~~~~~L~v~V~D~d~~~~~d 613 (1024)
.|.++-+.-.++|..+..|.+.||+.|.-+++.. .+........-.=.. .+.+.........+.|++|+.+.....+
T Consensus 5 ~l~L~~I~l~~iP~f~~~~gc~p~i~I~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~GDV~i~~~~~~~~~~~~ 84 (134)
T PF10409_consen 5 PLFLKSIILHGIPNFNSGGGCRPYIEIYNGGKKVFSTSKSYEDPKSYEQDSVIIELPKNLPLRGDVLIKFYHKRSSSMSK 84 (134)
T ss_dssp EEEEEEEEEES-TTSTTSSCCTEEEEEEETTEEEEETCCTCCCCCEEETTCEEEEEEEEEEEESEEEEEEEECETTECCC
T ss_pred eEEEEEEEEECCCccCCCCCEEEEEEEECCCccEEEeccceeccccccceeEEEEeCCCCeEeCCEEEEEEeCCCccccc
Confidence 4566666777888877788899999999988776 333322211110011 2333211122457889999877312455
Q ss_pred ccceEEEEEccccc
Q 001703 614 TSLGHAEINFLKHT 627 (1024)
Q Consensus 614 d~lG~~~i~l~~l~ 627 (1024)
+.+.++.+.-.-+.
T Consensus 85 ~~~f~~~FnT~Fi~ 98 (134)
T PF10409_consen 85 EKMFRFWFNTGFIE 98 (134)
T ss_dssp EEEEEEEEEGGGSB
T ss_pred CeEEEEEEeeeeee
Confidence 66777777666554
No 338
>smart00234 START in StAR and phosphatidylcholine transfer protein. putative lipid-binding domain in StAR and phosphatidylcholine transfer protein
Probab=26.74 E-value=7e+02 Score=25.51 Aligned_cols=77 Identities=9% Similarity=-0.000 Sum_probs=48.1
Q ss_pred CCcEEE-EEEEecCCCCC-CCce---EEEEEEEEEecCCCCCccEEEEEEEEEEecccchhhhhhhhhHHhHHHHHHHHH
Q 001703 933 GEGWIV-NEVMSLHDVPF-DDHF---RVHFRYEIEKSPLAHNACKCAIYIGISWLKSTKFQQRITQNITEKFTHRLKEMI 1007 (1024)
Q Consensus 933 ~~~~vv-~~~~~~~dVPy-gd~F---~v~~r~~i~~~~~~~~~c~l~v~~~V~f~Kst~~K~~Ie~~~~~g~~~~~~~~~ 1007 (1024)
+..++| ..+...+..|- .++- .....|+|++.+ ++.|++.....++..++ .=+.++..-+..+.-+.++.|.
T Consensus 121 ~~~~vi~~~Sv~~~~~p~~~~~VR~~~~~~~~~i~p~~--~~~t~vt~~~~~D~~G~-iP~~lvn~~~~~~~~~~~~~~~ 197 (206)
T smart00234 121 DGSYAVVDVSVTHPTSPPTSGYVRAENLPSGLLIEPLG--NGPSKVTWVSHADLKGW-LPHWLVRSLIKSGLAEFAKTWV 197 (206)
T ss_pred CCcEEEEEEECCCCCCCCCCCceEEEEeceEEEEEECC--CCCeEEEEEEEEecCCC-ccceeehhhhhhhHHHHHHHHH
Confidence 444544 44444466663 4443 356789999987 46799999999999775 2344555555555556666665
Q ss_pred HHHHH
Q 001703 1008 ELVER 1012 (1024)
Q Consensus 1008 ~~~~~ 1012 (1024)
..+++
T Consensus 198 ~~~~~ 202 (206)
T smart00234 198 ATLQK 202 (206)
T ss_pred HHHHH
Confidence 55544
No 339
>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function. It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.
Probab=26.47 E-value=2e+02 Score=26.73 Aligned_cols=95 Identities=14% Similarity=0.218 Sum_probs=47.1
Q ss_pred EEEEEECCe-EEeeecccCCCCCeEeeEEEEEEe-c------CCCCeEEEEEEecCCCCCCCCCCCCeeEEEEEeCcccc
Q 001703 22 YVKVQIGKH-KSKSRILKNNSNPVWNEEFVFRVH-N------IDDEELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIA 93 (1024)
Q Consensus 22 yv~v~l~~~-~~rT~v~~~t~nP~WnE~f~f~v~-~------~~~~~L~v~V~d~d~~~~f~~~~d~~lG~~~i~L~~l~ 93 (1024)
||.+.+... .+.|.++. +.+|.+|-+-.|.|. + .....+.++++..- ......+|.+.+++..+.
T Consensus 2 Fct~dFydfEtq~Tpvv~-G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~------g~d~~tla~~~i~l~~ll 74 (107)
T PF11618_consen 2 FCTYDFYDFETQTTPVVR-GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQAL------GSDFETLAAGQISLRPLL 74 (107)
T ss_dssp EEEE-STT---EE---EE-SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE-------SS-EEEEEEEEE--SHHH
T ss_pred EEEEEeeceeeeccccee-CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeec------cCCeEEEEEEEeechhhh
Confidence 566666554 46666666 889999999999985 1 22478899998866 124579999999999988
Q ss_pred ccCCCCCCCEEEEeecCCCCCCCCccccEEEEEEEE
Q 001703 94 AEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTISL 129 (1024)
Q Consensus 94 ~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~ 129 (1024)
...+ .....-..|.... +..-|.|...+++
T Consensus 75 ~~~~-~~i~~~~~l~g~~-----~~~~g~l~y~~rl 104 (107)
T PF11618_consen 75 ESNG-ERIHGSATLVGVS-----GEDFGTLEYWIRL 104 (107)
T ss_dssp H--S---EEEEEEE-BSS-----S-TSEEEEEEEEE
T ss_pred cCCC-ceEEEEEEEeccC-----CCeEEEEEEEEEe
Confidence 5422 1122234444121 2356776665554
No 340
>cd08894 SRPBCC_CalC_Aha1-like_1 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=26.38 E-value=5.7e+02 Score=24.36 Aligned_cols=134 Identities=9% Similarity=0.050 Sum_probs=64.7
Q ss_pred ccccccCCHHhHhhhccCChhHHHHHHHhCCcceeecccccCCCCceEEEEEEEEcccccCCCceecEEEEEeecCCCCc
Q 001703 856 YNAELPISVKALMEMFDGGKLEHQVMEKSGCHNYVTTPWDLVKPGVCERHLSYRFNRHVSIFGGEVTCTQQKSPLASGEG 935 (1024)
Q Consensus 856 ~~~~~~~~~~~~f~lf~~~~~~~~~~~~~~~~~i~~~~W~~~~~~~~~R~~sy~~n~~~~~~~~~~~~~Q~~~~~~~~~~ 935 (1024)
++..|++|++.+|+.|.+.....+.+--.+... ....+... .|+. +.|.... +.+.............+...
T Consensus 4 ~~r~i~ap~e~Vw~a~t~p~~l~~W~~p~~~~~-~~~~~d~~-~GG~---~~~~~~~---~~g~~~~~~g~v~e~~p~~~ 75 (139)
T cd08894 4 TTRVIDAPRDLVFAAWTDPEHLAQWWGPEGFTN-TTHEFDLR-PGGR---WRFVMHG---PDGTDYPNRIVFLEIEPPER 75 (139)
T ss_pred EEEEeCCCHHHHHHHhCCHHHHhhccCcCCCcc-eEEEEEec-CCCE---EEEEEEC---CCCCEecceEEEEEEcCCCE
Confidence 456799999999999988776555542222111 11112212 2332 4443211 21111111222333344455
Q ss_pred EEEEEEEecCCCCCCCceEEEEEEEEEecCCCCCccEEEEEEEEEEecccchhhhhhhhhHHhHHHHHHHHHHHHHHHH
Q 001703 936 WIVNEVMSLHDVPFDDHFRVHFRYEIEKSPLAHNACKCAIYIGISWLKSTKFQQRITQNITEKFTHRLKEMIELVEREI 1014 (1024)
Q Consensus 936 ~vv~~~~~~~dVPygd~F~v~~r~~i~~~~~~~~~c~l~v~~~V~f~Kst~~K~~Ie~~~~~g~~~~~~~~~~~~~~~i 1014 (1024)
++..-.. + +.. ....|.|+..+ .+|+|.+... |........++ ..|...-+...++.|+.++
T Consensus 76 l~~t~~~---~---~~~--~~v~~~~~~~~---~gT~ltl~~~--~~~~~~~~~~~----~~~~~~Gw~~~l~~L~~~l 137 (139)
T cd08894 76 IVYDHGS---G---PPR--FRLTVTFEEQG---GKTRLTWRQV--FPTAAERCEKI----KFGAVEGNEQTLDRLAAYL 137 (139)
T ss_pred EEEEecc---C---CCc--EEEEEEEEECC---CCEEEEEEEE--cCCHHHHHHHH----HhCHHHHHHHHHHHHHHHH
Confidence 5544211 1 222 33567777755 6788888753 54332222222 3455555666666666554
No 341
>KOG0904 consensus Phosphatidylinositol 3-kinase catalytic subunit (p110) [Signal transduction mechanisms]
Probab=26.13 E-value=1.1e+02 Score=38.38 Aligned_cols=67 Identities=19% Similarity=0.275 Sum_probs=43.7
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEEC----CEE----EeeecccCCCCCeEeEEEEEEee-cC--CCCeEEEEEEe
Q 001703 537 VLTVALVEGVNLASSEMTGLSDPYVVFTCN----GKT----RTSSVQLQTCDPQWHDILEFDAM-EE--PPSVLDVEVFD 605 (1024)
Q Consensus 537 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~----~~~----~kT~~~~~t~nP~WnE~f~f~~~-~~--~~~~L~v~V~D 605 (1024)
-++|+++.+.++-. .-..|-+|.|..+ ++. +.|.-+..+.+|.||+..+|++. .+ ....|-+.||-
T Consensus 344 ~frI~l~~is~~n~---~~t~~~kV~V~~~lyhG~e~Lc~~~sTs~v~~~~~~~Wn~~leFDI~i~DLPr~ArLc~~i~~ 420 (1076)
T KOG0904|consen 344 PFRIKLVGISKVNL---PETVDLKVFVEAGLYHGTEVLCKTRSTSEVPGCSFPLWNEWLEFDIYIKDLPRMARLCLAIYA 420 (1076)
T ss_pred ceEEEEeeccccCC---CcccceEEEEEEEEEECCeehhcccccCCCCCccchhccceeEeeeecCCCChhhhheeeeeE
Confidence 56777777776533 2255777777764 332 34555666889999999999873 22 23477777775
Q ss_pred c
Q 001703 606 F 606 (1024)
Q Consensus 606 ~ 606 (1024)
-
T Consensus 421 v 421 (1076)
T KOG0904|consen 421 V 421 (1076)
T ss_pred e
Confidence 3
No 342
>PF14909 SPATA6: Spermatogenesis-assoc protein 6
Probab=25.38 E-value=6.4e+02 Score=24.71 Aligned_cols=84 Identities=19% Similarity=0.272 Sum_probs=61.9
Q ss_pred EEEEEEEEeecCC---CCCcEEEEEECCeEEeeecccCCCCCeEeeEEEEE-Ee-----------cCCCCeEEEEEEecC
Q 001703 5 RLYVYVLQGQDLL---AKDSYVKVQIGKHKSKSRILKNNSNPVWNEEFVFR-VH-----------NIDDEELVVSVFQHN 69 (1024)
Q Consensus 5 ~L~V~V~~Ar~L~---~~DPyv~v~l~~~~~rT~v~~~t~nP~WnE~f~f~-v~-----------~~~~~~L~v~V~d~d 69 (1024)
.|+++-+.|-|.- ..|-|..|++.++..+|+......-=.++|.|.|+ +. ......+.++++...
T Consensus 3 eL~i~aVTCPGv~L~~~~~vyL~v~~lg~~~~T~~~ppvFPllfhek~~FeK~F~~~~dp~~l~~~Le~e~~~iELiQl~ 82 (140)
T PF14909_consen 3 ELEIHAVTCPGVWLCDKGDVYLSVCILGQYKRTRCLPPVFPLLFHEKFRFEKVFPNAVDPAQLADLLEDETVYIELIQLV 82 (140)
T ss_pred EEEEEEEecCCeEeCCCCCEEEEEEEcccEeecccCCCcCCeeEeeEEEeEEEecCCCCHHHHHHHhhcCcEEEEEEEEe
Confidence 3566666665543 67899999999999999988776666789999998 32 133578899998877
Q ss_pred CCCCCCCCCCCeeEEEEEeCccccc
Q 001703 70 DDSGLFGSSGELMGRVRVPVSSIAA 94 (1024)
Q Consensus 70 ~~~~f~~~~d~~lG~~~i~L~~l~~ 94 (1024)
. .....|+...-.+.++..
T Consensus 83 ---~---~~g~iLA~ye~n~rDfLf 101 (140)
T PF14909_consen 83 ---P---PAGEILAYYEENTRDFLF 101 (140)
T ss_pred ---C---CCCcEEEEEeccccceEc
Confidence 1 136677777777777665
No 343
>PF07289 DUF1448: Protein of unknown function (DUF1448); InterPro: IPR006606 This entry represents the Bardet-Biedl syndrome 5 protein (BBL5). It consists of eukaryotic proteins of around 375 residues in length.
Probab=25.26 E-value=4.5e+02 Score=29.71 Aligned_cols=103 Identities=18% Similarity=0.229 Sum_probs=63.5
Q ss_pred CCCccccccceeeee--ecccccccceeeeecEEEEEeccCCCeEEEEEecccceeeEeccccccccC-CCcEEEEEecc
Q 001703 697 LPPEEFLIKDFTCYL--KRKMPLQGRLFLSARIVGFYANLFGNKTKFFFLWEDIEDIQILSPSLATVG-SPSLVIILWKG 773 (1024)
Q Consensus 697 l~~~e~l~~~~~c~~--~~~~~~~G~lyis~~~~cF~s~~~g~~~~~~i~~~di~~i~k~~~~~~~~~-~~~i~i~~~~~ 773 (1024)
+-.+|.+++.+...= +..--..|+|++|.-.+.|||.--. ...+.|=|.-|..|+.....--..| ..++.|.++-+
T Consensus 19 lr~GE~~i~~~~~VEDtKGN~G~~G~l~vTNLR~iW~s~~~~-r~NlSIG~~~i~~i~~~~~~sklrg~teaL~i~~k~~ 97 (339)
T PF07289_consen 19 LRPGEFIIDRLDPVEDTKGNNGDRGRLVVTNLRLIWHSLKRP-RINLSIGYNCITNISTKTVNSKLRGNTEALYILAKFN 97 (339)
T ss_pred cccceEEEEeeeceeeccCCCCCeeEEEEEeeeeEEeccCCC-ceeEEeeceeEEEEEEEEeeccccCceeEEEEeeecC
Confidence 445677776665421 1122245999999999999998544 4778888888888774432111122 23566665411
Q ss_pred CCcccCCCccccCCCCceEEEEEeecChh---HHHHHHHHHHHh
Q 001703 774 RGLDARHGAKSQDEEGRLRFYFQSFVSFN---DASRTIMALWRS 814 (1024)
Q Consensus 774 ~~~~~~~~~~~~~~~~~~~~~f~sf~~rd---~~~~~l~~~~~~ 814 (1024)
+.+-.|.|+...... ..|..+..+|+.
T Consensus 98 --------------~~rfEFiFt~~~~~~~~~~lf~~v~~v~ra 127 (339)
T PF07289_consen 98 --------------NTRFEFIFTNLSPNSPRQRLFTSVQAVYRA 127 (339)
T ss_pred --------------CceEEEEeccCCCCCccchHHHHHHHHHHH
Confidence 234467777543322 459999999996
No 344
>PF01852 START: START domain; InterPro: IPR002913 START (StAR-related lipid-transfer) is a lipid-binding domain in StAR, HD-ZIP and signalling proteins []. StAR (Steroidogenic Acute Regulatory protein) is a mitochondrial protein that is synthesised in response to luteinising hormone stimulation []. Expression of the protein in the absence of hormone stimulation is sufficient to induce steroid production, suggesting that this protein is required in the acute regulation of steroidogenesis. Representatives of the START domain family have been shown to bind different ligands such as sterols (StAR protein) and phosphatidylcholine (PC-TP). Ligand binding by the START domain can also regulate the activities of other domains that co-occur with the START domain in multidomain proteins such as Rho-gap, the homeodomain, and the thioesterase domain [, ]. The crystal structure of START domain of human MLN64 shows an alpha/beta fold built around an U-shaped incomplete beta-barrel. Most importantly, the interior of the protein encompasses a 26 x 12 x 11 Angstroms hydrophobic tunnel that is apparently large enough to bind a single cholesterol molecule []. The START domain structure revealed an unexpected similarity to that of the birch pollen allergen Bet v 1 and to bacterial polyketide cyclases/aromatases [, ]. ; PDB: 1JSS_B 2R55_B 1LN3_B 1LN1_A 1LN2_B 3FO5_A 2Z9Y_A 2E3R_A 3H3Q_B 2E3P_B ....
Probab=24.76 E-value=7.6e+02 Score=25.20 Aligned_cols=80 Identities=10% Similarity=0.047 Sum_probs=53.5
Q ss_pred CCCCcEEEEEEEecCCCCC--CCceEEE---EEEEEEecCCCCCccEEEEEEEEEEecccchhhhhhhhhHHhHHHHHHH
Q 001703 931 ASGEGWIVNEVMSLHDVPF--DDHFRVH---FRYEIEKSPLAHNACKCAIYIGISWLKSTKFQQRITQNITEKFTHRLKE 1005 (1024)
Q Consensus 931 ~~~~~~vv~~~~~~~dVPy--gd~F~v~---~r~~i~~~~~~~~~c~l~v~~~V~f~Kst~~K~~Ie~~~~~g~~~~~~~ 1005 (1024)
.++..+++..+...+..|- .++-+++ ..|+|++.+ ++.|++.....++..++. -+.++..-+.+.+-+.++.
T Consensus 119 ~~~~~~i~~~Si~~~~~~~~~~~~VR~~~~~s~~~i~~~~--~~~~~vt~~~~~D~~G~i-P~~~~n~~~~~~~~~~~~~ 195 (206)
T PF01852_consen 119 EDGTYVIVSRSIDHPQYPPNSKGYVRAEILISGWVIRPLG--DGRTRVTYVSQVDPKGWI-PSWLVNMVVKSQPPNFLKN 195 (206)
T ss_dssp TTSEEEEEEEEEEBTTSSTT-TTSEEEEEESEEEEEEEET--TCEEEEEEEEEEESSSSS-HHHHHHHHHHHHHHHHHHH
T ss_pred ccceEEEEEeeeccccccccccCcceeeeeeEeEEEEEcc--CCCceEEEEEEECCCCCC-hHHHHHHHHHHhHHHHHHH
Confidence 4444555655555577774 5555544 568999988 466999999999986542 3555555556666677777
Q ss_pred HHHHHHHH
Q 001703 1006 MIELVERE 1013 (1024)
Q Consensus 1006 ~~~~~~~~ 1013 (1024)
+.+.++++
T Consensus 196 ~~~~~~~~ 203 (206)
T PF01852_consen 196 LRKALKKQ 203 (206)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHHh
Confidence 77777764
No 345
>cd07824 SRPBCC_6 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=23.28 E-value=6.7e+02 Score=24.07 Aligned_cols=127 Identities=6% Similarity=-0.058 Sum_probs=61.7
Q ss_pred cccccCCHHhHhhhccCChhHHHHHHHhCCcceeecccccCCCCceEEEEEEEEcccccCCCceecEEEEEeecCCCCcE
Q 001703 857 NAELPISVKALMEMFDGGKLEHQVMEKSGCHNYVTTPWDLVKPGVCERHLSYRFNRHVSIFGGEVTCTQQKSPLASGEGW 936 (1024)
Q Consensus 857 ~~~~~~~~~~~f~lf~~~~~~~~~~~~~~~~~i~~~~W~~~~~~~~~R~~sy~~n~~~~~~~~~~~~~Q~~~~~~~~~~~ 936 (1024)
...+++|++.+|+++.|.+-+.+++.. +.+..... ........-.+.|....+. +.......+ .........+
T Consensus 6 ~~~i~ap~e~Vw~~~tD~~~~~~w~~~--v~~~~~~~--~~~~~~~g~~~~~~~~~~~-~~~~~~~~~--v~~~~p~~~~ 78 (146)
T cd07824 6 VWRIPAPPEAVWDVLVDAESWPDWWPG--VERVVELE--PGDEAGIGARRRYTWRGLL-PYRLRFELR--VTRIEPLSLL 78 (146)
T ss_pred EEEecCCHHHHHHHHhChhhcchhhhc--eEEEEEcc--CCCCCCcceEEEEEEEecC-CcEEEEEEE--EEeecCCcEE
Confidence 456899999999988777766666653 33333211 0111111122334321211 211111111 1111223334
Q ss_pred EEEEEEecCCCCCCCceEEEEEEEEEecCCCCCccEEEEEEEEEEec------ccchhhhhhhhhHHhHHHH
Q 001703 937 IVNEVMSLHDVPFDDHFRVHFRYEIEKSPLAHNACKCAIYIGISWLK------STKFQQRITQNITEKFTHR 1002 (1024)
Q Consensus 937 vv~~~~~~~dVPygd~F~v~~r~~i~~~~~~~~~c~l~v~~~V~f~K------st~~K~~Ie~~~~~g~~~~ 1002 (1024)
.+. ... | |.-+.+|.|+..+ .+|+|.....++... +.+++.++.+....-+...
T Consensus 79 ~~~-~~g----~----~~~~~~~~~~~~~---~gt~vt~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~ 138 (146)
T cd07824 79 EVR-ASG----D----LEGVGRWTLAPDG---SGTVVRYDWEVRTTKPWMNLLAPLARPVFRWNHRRVMRAG 138 (146)
T ss_pred EEE-EEE----e----eeEEEEEEEEEcC---CCEEEEEEEEEEcCHHHHHhhhHhhhhHHHHhHHHHHHhH
Confidence 333 211 1 4447889898865 578887777777733 2445555555554333333
No 346
>KOG2761 consensus START domain-containing proteins involved in steroidogenesis/phosphatidylcholine transfer [Lipid transport and metabolism]
Probab=23.11 E-value=9.1e+02 Score=25.54 Aligned_cols=81 Identities=10% Similarity=0.051 Sum_probs=54.2
Q ss_pred CcEEEEEEEecCCCCCCCceE----EEEEEEEE--ecCCCCCccEEEEEEEEEEecccchhhhhhhhhHHhHHHHHHHHH
Q 001703 934 EGWIVNEVMSLHDVPFDDHFR----VHFRYEIE--KSPLAHNACKCAIYIGISWLKSTKFQQRITQNITEKFTHRLKEMI 1007 (1024)
Q Consensus 934 ~~~vv~~~~~~~dVPygd~F~----v~~r~~i~--~~~~~~~~c~l~v~~~V~f~Kst~~K~~Ie~~~~~g~~~~~~~~~ 1007 (1024)
..+++...-.-+.+|=.+-+. +...|+|. .-+.++++|.+.+.+ .+--+...-+-++..++..|+=...+.|-
T Consensus 131 ~~~i~s~~v~h~s~P~~~~~vRv~~~~s~~~I~~~~~~~~~~~~~~~~~~-~~~p~~~iP~~~v~~~~~~gmp~~vkKm~ 209 (219)
T KOG2761|consen 131 DYYIVSKSVQHPSYPPLKKKVRVTVYRSGWLIRVESRSGDEQGCACEYLY-FHNPGGGIPKWVVKLAVRKGMPGAVKKME 209 (219)
T ss_pred eEEEEEecccCCCcCCcCCcEEEEEEEEEEEEEcccccCCCCccEEEEEE-EECCCCCCcHHHHHHHHHhcChHHHHHHH
Confidence 334555444447888665443 34455555 122335888885554 44557777888888999999999999998
Q ss_pred HHHHHHHh
Q 001703 1008 ELVEREIL 1015 (1024)
Q Consensus 1008 ~~~~~~i~ 1015 (1024)
..+.++..
T Consensus 210 ~a~~~Y~~ 217 (219)
T KOG2761|consen 210 KALLAYQE 217 (219)
T ss_pred HHHHhhhh
Confidence 88888864
No 347
>cd08907 START_STARD8-like C-terminal lipid-binding START domain of mammalian STARD8 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=22.80 E-value=5e+02 Score=27.18 Aligned_cols=54 Identities=11% Similarity=0.128 Sum_probs=39.8
Q ss_pred cCCCCcEEEEEEEecCCCCCCC---ceEEEEEEEEEecCCCCCccEEEEEEEEEEeccc
Q 001703 930 LASGEGWIVNEVMSLHDVPFDD---HFRVHFRYEIEKSPLAHNACKCAIYIGISWLKST 985 (1024)
Q Consensus 930 ~~~~~~~vv~~~~~~~dVPygd---~F~v~~r~~i~~~~~~~~~c~l~v~~~V~f~Kst 985 (1024)
...|.+++++.+..-+.+|.-. .-...++|.|++.+ +++|+|.=.+++++.+++
T Consensus 123 l~~g~~iI~~~SV~H~~~pp~~gVRa~~l~sgYlIep~g--~g~s~ltyi~rvD~rG~~ 179 (205)
T cd08907 123 LPRGGCLLVSQSVDHDNPQLEAGVRAVLLTSQYLIEPCG--MGRSRLTHICRADLRGRS 179 (205)
T ss_pred CCCCCEEEEEecccCCcCCCCCCeEEEEEeccEEEEECC--CCCeEEEEEEEeCCCCCC
Confidence 3456666777444446666554 45678999999997 589999999999998773
No 348
>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD3 (also known as metastatic lymph node 64/MLN64) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD3 has a high affinity for cholesterol. It may function in trafficking endosomal cholesterol to a cytosolic acceptor or membrane. In addition to having a cytoplasmic START cholesterol-binding domain, STARD3 also contains an N-terminal MENTAL cholesterol-binding and protein-protein interaction domain. The MENTAL domain contains transmembrane helices and anchors MLN64 to endosome membranes. The gene encoding STARD3 is overexpressed in about 25% of breast cancers.
Probab=22.77 E-value=8.9e+02 Score=25.31 Aligned_cols=141 Identities=7% Similarity=0.024 Sum_probs=74.3
Q ss_pred cccccCCHHhHhh-hccCChhHHHH---HHHhCCcceeecccccCCCCceEEEEEEEEcccc--cCCCc-eecEEEEEee
Q 001703 857 NAELPISVKALME-MFDGGKLEHQV---MEKSGCHNYVTTPWDLVKPGVCERHLSYRFNRHV--SIFGG-EVTCTQQKSP 929 (1024)
Q Consensus 857 ~~~~~~~~~~~f~-lf~~~~~~~~~---~~~~~~~~i~~~~W~~~~~~~~~R~~sy~~n~~~--~~~~~-~~~~~Q~~~~ 929 (1024)
..++++|++.+|. |+.+..-..+. +.+.. -+. ..+... .+.|.++.|- +|-.. ...... +.
T Consensus 54 ~~~v~~~~~~l~~~ll~D~~~~~~W~~~~~~~~--vi~-------~~~~~~-~i~Y~v~~p~~~~pv~~RDfV~~r-~~- 121 (209)
T cd08906 54 KAFMQCPAELVYQEVILQPEKMVLWNKTVSACQ--VLQ-------RVDDNT-LVSYDVAAGAAGGVVSPRDFVNVR-RI- 121 (209)
T ss_pred EEEEcCCHHHHHHHHHhChhhccccCccchhhh--hee-------eccCCc-EEEEEEccccccCCCCCCceEEEE-EE-
Confidence 5568999999985 87554432111 11111 111 111122 3456544443 23222 222222 22
Q ss_pred cCCCCcEE-EEEEEecCCCCC-CCceEEE---EEEEEEecCCCCCccEEEEEEEEEEecccchhhhhhhhhHHhHHHHHH
Q 001703 930 LASGEGWI-VNEVMSLHDVPF-DDHFRVH---FRYEIEKSPLAHNACKCAIYIGISWLKSTKFQQRITQNITEKFTHRLK 1004 (1024)
Q Consensus 930 ~~~~~~~v-v~~~~~~~dVPy-gd~F~v~---~r~~i~~~~~~~~~c~l~v~~~V~f~Kst~~K~~Ie~~~~~g~~~~~~ 1004 (1024)
..++++|+ +..+...+.+|= -++-+++ +-|.+...+.+++.|++.-...++..+ ..=+.+|.+...+..-++++
T Consensus 122 ~~~~~~~i~~~~sv~~~~~P~~~~~VR~~~~~~G~~i~~~~~~~~~t~vt~~~~~Dp~G-~lP~~lvN~~~~~~~~~~~~ 200 (209)
T cd08906 122 ERRRDRYVSAGISTTHSHKPPLSKYVRGENGPGGFVVLKSASNPSVCTFIWILNTDLKG-RLPRYLIHQSLAATMFEFAS 200 (209)
T ss_pred EecCCcEEEEEEEEecCCCCCCCCeEEEeeeccEEEEEECCCCCCceEEEEEEecCCCC-CCCHHHHHHHHHHHHHHHHH
Confidence 23455665 445555455553 4554455 456666643336899999899998855 33466777777766666666
Q ss_pred HHHHHH
Q 001703 1005 EMIELV 1010 (1024)
Q Consensus 1005 ~~~~~~ 1010 (1024)
.|-+.+
T Consensus 201 ~LR~~~ 206 (209)
T cd08906 201 HLRQRI 206 (209)
T ss_pred HHHHHH
Confidence 555544
No 349
>cd05137 RasGAP_CLA2_BUD2 CLA2/BUD2 functions as a GTPase-activating protein (GAP) for BUD1/RSR1 and is necessary for proper bud-site selection in yeast. BUD2 has sequence similarity to the catalytic domain of RasGAPs, and stimulates the hydrolysis of BUD1-GTP to BUD1-GDP. Elimination of Bud2p activity by mutation causes a random budding pattern with no growth defect. Overproduction of Bud2p also alters the budding pattern.
Probab=21.46 E-value=1.1e+02 Score=35.48 Aligned_cols=40 Identities=8% Similarity=0.183 Sum_probs=29.7
Q ss_pred cceEEEEEccc-ccCCCccceEEEcccc-ccccccceeEEEEE
Q 001703 615 SLGHAEINFLK-HTSTELADMWVSLEGK-LAQSAQSKVHLRIF 655 (1024)
Q Consensus 615 ~lG~~~i~l~~-l~~~~~~~~w~~L~~~-~~~~~~g~l~l~~~ 655 (1024)
.+|.+.|++.. +..+...+.||++.+. .+..+.|.+ |++.
T Consensus 1 ~~G~v~i~~~~~~~~~~~~e~w~~i~~~~~~~~~~~~l-lk~~ 42 (395)
T cd05137 1 LVGRIDITLEMILDRGLDKETWLPIFDVDNKSVGEGLI-IKVS 42 (395)
T ss_pred CeeEEEeehhhhccCCCCceeeeccccCCCCCcCcceE-EEEE
Confidence 48999999999 6677788999999873 333355666 5554
No 350
>KOG4269 consensus Rac GTPase-activating protein BCR/ABR [Signal transduction mechanisms]
Probab=21.12 E-value=38 Score=42.08 Aligned_cols=65 Identities=20% Similarity=0.340 Sum_probs=51.3
Q ss_pred CcEEEEEEEEeecCC-CCCcEEEEEEC-----CeEEeeecccCCCCCeEeeEEEEEEecCCCCeEEEEEEecC
Q 001703 3 STRLYVYVLQGQDLL-AKDSYVKVQIG-----KHKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHN 69 (1024)
Q Consensus 3 ~~~L~V~V~~Ar~L~-~~DPyv~v~l~-----~~~~rT~v~~~t~nP~WnE~f~f~v~~~~~~~L~v~V~d~d 69 (1024)
.+.+.+.+.+|..|. ...-||...+. ..+.+|.++.+|..|.||++++..+ ...+.+++..++.+
T Consensus 758 ygflh~~vhsat~lkqs~~lY~Td~v~e~~~~~s~~st~~iadT~~~~~npe~hv~~--~~sqS~r~~~~ek~ 828 (1112)
T KOG4269|consen 758 YGFLHVIVHSATGLKQSRNLYCTDEVDEFGYFVSKASTRVIADTAEPQWNPEKHVPV--IESQSSRLEKTEKS 828 (1112)
T ss_pred ccceeeeeccccccccccceeeehhhhhhccccccccceeeecccCCCCChhcccch--hhccccchhhhccc
Confidence 356889999999998 66778887763 3568999999999999999999887 55666666666654
No 351
>cd08911 START_STARD7-like Lipid-binding START domain of mammalian STARD7 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD7 (also known as gestational trophoblastic tumor 1/GTT1). It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be involved in the intracellular trafficking of phosphatidycholine (PtdCho) to mitochondria. STARD7 was shown to be surface active and to interact differentially with phospholipid monolayers, it showed a preference for phosphatidylserine, cholesterol, and phosphatidylglycerol.
Probab=21.05 E-value=9.5e+02 Score=24.98 Aligned_cols=147 Identities=3% Similarity=-0.116 Sum_probs=74.7
Q ss_pred ccc-cCCHHhHhhhccCChhHHHHHHHhCCcceeecccccCCCCceEEEEEEEEccc--ccCCCceecEEEEEeecCCCC
Q 001703 858 AEL-PISVKALMEMFDGGKLEHQVMEKSGCHNYVTTPWDLVKPGVCERHLSYRFNRH--VSIFGGEVTCTQQKSPLASGE 934 (1024)
Q Consensus 858 ~~~-~~~~~~~f~lf~~~~~~~~~~~~~~~~~i~~~~W~~~~~~~~~R~~sy~~n~~--~~~~~~~~~~~Q~~~~~~~~~ 934 (1024)
.+| +++++.|++++.|.++..+.........+-.. . ....++.+-|.+..| ++.. ...-........++.
T Consensus 51 ~~~~d~s~~~~~~~~~D~~~r~~Wd~~~~~~~~le~----~-~~~~~~i~y~~~~~P~P~s~R--D~V~~r~~~~~~~~~ 123 (207)
T cd08911 51 GSFDDVTARDFLNVQLDLEYRKKWDATAVELEVVDE----D-PETGSEIIYWEMQWPKPFANR--DYVYVRRYIIDEENK 123 (207)
T ss_pred EEEcCCCHHHHHHHHhCHHHHHHHHhhheeEEEEEc----c-CCCCCEEEEEEEECCCCCCCc--cEEEEEEEEEcCCCC
Confidence 345 89999999988777776666555432222111 0 011223333333223 2211 222222222223333
Q ss_pred cEEEEEEEe-cCCCCCCCceE----EEEEEEEEecCC-CCCccEEEEEEEEEEecccchhhhhhhhhHHhHHHHHHHHHH
Q 001703 935 GWIVNEVMS-LHDVPFDDHFR----VHFRYEIEKSPL-AHNACKCAIYIGISWLKSTKFQQRITQNITEKFTHRLKEMIE 1008 (1024)
Q Consensus 935 ~~vv~~~~~-~~dVPygd~F~----v~~r~~i~~~~~-~~~~c~l~v~~~V~f~Kst~~K~~Ie~~~~~g~~~~~~~~~~ 1008 (1024)
.++|..... -+.+|-.+-|. ....|+|++... ++++|++...+..+--++ .=+.++..-+.++.-+.++.|-+
T Consensus 124 ~~~i~~~sv~hp~~P~~~g~VRv~~~~~~~~i~p~~~~~~~~~~~~~~~~~dPgG~-IP~~lvN~~~~~~~~~~l~~l~~ 202 (207)
T cd08911 124 LIVIVSKAVQHPSYPESPKKVRVEDYWSYMVIRPHKSFDEPGFEFVLTYFDNPGVN-IPSYITSWVAMSGMPDFLERLRN 202 (207)
T ss_pred EEEEEEecCCCCCCCCCCCCEEEEEeEEEEEEEeCCCCCCCCeEEEEEEEeCCCCc-cCHHHHHHHHHhhccHHHHHHHH
Confidence 445553333 24778665433 567899997631 246888887777665333 22444444455555566666655
Q ss_pred HHHH
Q 001703 1009 LVER 1012 (1024)
Q Consensus 1009 ~~~~ 1012 (1024)
.+.+
T Consensus 203 a~~~ 206 (207)
T cd08911 203 AALK 206 (207)
T ss_pred HHhc
Confidence 5543
No 352
>cd07818 SRPBCC_1 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=20.17 E-value=7.6e+02 Score=23.54 Aligned_cols=57 Identities=4% Similarity=-0.048 Sum_probs=34.3
Q ss_pred eEEEEEEEEEecCCCCCccEEEEEEEEEEecccchhhhhhhhhHHhHHHHHHHHHHHHHHH
Q 001703 953 FRVHFRYEIEKSPLAHNACKCAIYIGISWLKSTKFQQRITQNITEKFTHRLKEMIELVERE 1013 (1024)
Q Consensus 953 F~v~~r~~i~~~~~~~~~c~l~v~~~V~f~Kst~~K~~Ie~~~~~g~~~~~~~~~~~~~~~ 1013 (1024)
+.....|.++..+ .+|+|.+.......... +-..+.......+++.+...++.|+..
T Consensus 91 ~~~~~~~~~~~~~---~gT~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~lk~~ 147 (150)
T cd07818 91 ATNDVEFTLEPVG---GGTKVTWGMSGELPFPL-KLMYLFLDMDKMIGKDFEKGLANLKAV 147 (150)
T ss_pred ccceEEEEEEEcC---CceEEEEEEEecCCchH-HHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 3678999999986 57888877766654332 223444444444455555555555544
Done!