Query 001703
Match_columns 1024
No_of_seqs 636 out of 3943
Neff 8.2
Searched_HMMs 29240
Date Tue Mar 26 16:57:08 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001703.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_999-1003//hhsearch_pdb/001703hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2r83_A Synaptotagmin-1; C2A-C2 1.0 1 1 218.3 30.4 104 537-641 151-273 (284)
2 1dqv_A Synaptotagmin III; beta 1.0 1 1 182.4 20.1 100 2-108 18-129 (296)
3 2fk9_A Protein kinase C, ETA t 1.0 1 1 163.3 14.0 117 532-657 25-156 (157)
4 3jzy_A Intersectin 2; C2 domai 1.0 1 1 156.5 15.4 120 534-658 385-508 (510)
5 2dmh_A Myoferlin; beta-sandwic 1.0 1 1 155.8 17.3 125 534-660 5-135 (140)
6 3kwu_A MUNC13-1; calcium bindi 1.0 1 1 154.7 18.8 121 533-657 14-146 (148)
7 1gmi_A Protein kinase C, epsil 1.0 1 1 154.2 13.7 118 534-660 4-135 (136)
8 2ep6_A MCTP2 protein; beta san 1.0 1 1 153.5 15.1 122 532-657 9-131 (133)
9 3nsj_A Perforin-1; pore formin 1.0 1 1 153.3 15.0 113 535-660 393-506 (540)
10 3m7f_B E3 ubiquitin-protein li 1.0 1 1 153.2 17.0 127 533-661 5-144 (176)
No 1
>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2
Probab=1.00 E-value=1 Score=218.30 Aligned_cols=104 Identities=25% Similarity=0.470 Sum_probs=87.9
Q ss_pred EEEEEEEEEECCCCCCCCCCCCCEEEEEEC--C---EEEEEECCCCCCCCEEEEEEEEEEECCC--CCEEEEEEEECCCC
Q ss_conf 999999994279999988989829999998--9---7985100159999968589899743599--98399999962799
Q 001703 537 VLTVALVEGVNLASSEMTGLSDPYVVFTCN--G---KTRTSSVQLQTCDPQWHDILEFDAMEEP--PSVLDVEVFDFDGP 609 (1024)
Q Consensus 537 ~l~V~vi~a~~L~~~d~~g~~DPyv~i~~~--~---~~~kT~~~~~t~nP~Wne~f~f~~~~~~--~~~l~i~V~D~d~~ 609 (1024)
.|.|.|++|+||+.+|.+|.+||||++++. + .+++|+++++++||+|||+|.|.+.... ...|.|+|||+|.
T Consensus 151 ~l~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~d~- 229 (284)
T 2r83_A 151 KLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDK- 229 (284)
T ss_dssp EEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCTTTGGGEEEEEEEEECCS-
T ss_pred CEEEEEEEEECCCCCCCCCCCCEEEEEEEEECCCEEEEECCCEECCCCCCEECEEEEEECCHHHHCCEEEEEEEEECCC-
T ss_conf 5499999967888767899968489999986993731331513318999777403898489799085389999996898-
Q ss_pred CCCCCCCEEEEEECCCC------------CCCCCCCEEEECCCC
Q ss_conf 99885215999992025------------687741059985565
Q 001703 610 FDQATSLGHAEINFLKH------------TSTELADMWVSLEGK 641 (1024)
Q Consensus 610 ~~~dd~iG~~~i~l~~l------------~~~~~~~~w~~L~~~ 641 (1024)
+++|++||++.+++..+ .++.....|++|.+.
T Consensus 230 ~~~~~~iG~~~i~l~~~~~~~~~w~~~~~~~~~~~~~W~~L~~~ 273 (284)
T 2r83_A 230 IGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQVE 273 (284)
T ss_dssp SSCCCEEEEEEEETTCCHHHHHHHHHHHHSTTSCEEEEEECBCH
T ss_pred CCCCCEEEEEEECCCCCCCHHHHHHHHHHCCCCCHHEEEECCCC
T ss_conf 88885788999898888727889999987899814265226895
No 2
>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A
Probab=1.00 E-value=1 Score=182.36 Aligned_cols=100 Identities=30% Similarity=0.486 Sum_probs=79.3
Q ss_pred CCCEEEEEEEEEECCC------CCCCEEEEEE---CCEEEEEECCCCCCCCEEEEEEEEEEE--CCCCCEEEEEEEECCC
Q ss_conf 8848999999822189------9994999999---893876106158999959449999984--4999759999995388
Q 001703 2 VSTRLYVYVLQGQDLL------AKDSYVKVQI---GKHKSKSRILKNNSNPVWNEEFVFRVH--NIDDEELVVSVFQHND 70 (1024)
Q Consensus 2 ~~~~L~V~V~~Ar~L~------~~dpyv~i~l---~~~~~kT~v~~~t~nP~WnE~f~f~v~--~~~~~~L~i~V~d~d~ 70 (1024)
..+.|.|+|++|++|+ .+||||++++ +.++++|+++++++||+|||+|.|.+. +.....|.|+|||+|
T Consensus 18 ~~~~L~v~v~~a~~L~~~d~~g~~dPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~~~V~d~d- 96 (296)
T 1dqv_A 18 GSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLAELAQRKLHFSVYDFD- 96 (296)
T ss_dssp SSCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCEECCCCCSCSSCEEEEEEEEECCGGGGSSCCCEEEEEECC-
T ss_pred CCCEEEEEEEEEECCCCCCCCCCCCEEEEEEEECCCCEEEECCCCCCCCCCCEEEEEEEEECHHHHCCCEEEEEEEECC-
T ss_conf 8998999999957999867899808399999985897147687247999973820799993689926788999999758-
Q ss_pred CCCCCCCCCCEEEEEEEE-CCCCCCCCCCCCCCEEEEEE
Q ss_conf 999889889712989986-86433437888997789833
Q 001703 71 DSGLFGSSGELMGRVRVP-VSSIAAEDNHMLPPTWFSLE 108 (1024)
Q Consensus 71 ~~~f~~~~d~~lG~~~i~-l~~l~~~~~~~~~~~W~~L~ 108 (1024)
+ .++|++||++.++ +..+... ......|++|.
T Consensus 97 --~--~~~~~~iG~~~i~~l~~~~~~--~~~~~~w~~L~ 129 (296)
T 1dqv_A 97 --R--FSRHDLIGQVVLDNLLELAEQ--PPDRPLWRDIL 129 (296)
T ss_dssp --S--SSCCCEEEEEECCCTTGGGSS--CSSCCCCEECB
T ss_pred --C--CCCCCEEEEEEECCCCCCCCC--CCCCEEEECCC
T ss_conf --9--887746799992531021337--76504662023
No 3
>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens}
Probab=1.00 E-value=1 Score=163.35 Aligned_cols=117 Identities=21% Similarity=0.308 Sum_probs=102.4
Q ss_pred CCCCEEEEEEEEEEECCCCCCC----------CCCCCCEEEEEECCEE-EEEECCCCCCCCEEEEEEEEEEECCCCCEEE
Q ss_conf 4888099999999427999998----------8989829999998979-8510015999996858989974359998399
Q 001703 532 QGDGWVLTVALVEGVNLASSEM----------TGLSDPYVVFTCNGKT-RTSSVQLQTCDPQWHDILEFDAMEEPPSVLD 600 (1024)
Q Consensus 532 ~~~~~~l~V~vi~a~~L~~~d~----------~g~~DPyv~i~~~~~~-~kT~~~~~t~nP~Wne~f~f~~~~~~~~~l~ 600 (1024)
....|.|+|+|++|+||+++|. .|.+||||++.+++++ .+|+++++|+||+|||+|.|.+.. ...|.
T Consensus 25 ~~~~g~L~V~VieA~~L~~~D~~~~~~~f~~~~g~sDPYv~v~l~~~~~~kT~v~~ktlnP~WNE~F~f~v~~--~~~L~ 102 (157)
T 2fk9_A 25 MKFNGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQVRVGQTSTKQKTNKPTYNEEFCANVTD--GGHLE 102 (157)
T ss_dssp CCEEEEEEEEEEEEECCCCCHHHHHTTTSSSSCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEE--ECEEE
T ss_pred CCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEECCEEEEEEEECCCCCCCCCCCEEEEECCC--CCEEE
T ss_conf 0276089999999889987555543220236788878299999999966786522799998337589999189--99999
Q ss_pred EEEEECCCCCCCCCCCEEEEEECCCCCCC----CCCCEEEECCCCCCCCCCCEEEEEEEEE
Q ss_conf 99996279999885215999992025687----7410599855655566541269999972
Q 001703 601 VEVFDFDGPFDQATSLGHAEINFLKHTST----ELADMWVSLEGKLAQSAQSKVHLRIFLE 657 (1024)
Q Consensus 601 i~V~D~d~~~~~dd~iG~~~i~l~~l~~~----~~~~~w~~L~~~~~~~~~g~l~l~i~~~ 657 (1024)
|+|||+|. +++||+||++.|+|.++..+ ...+.|++|++ +|+|+|++.++
T Consensus 103 ~~V~D~d~-~~~dd~iG~~~i~l~~l~~~~~~~~~~~~W~~L~~------~G~i~l~l~~~ 156 (157)
T 2fk9_A 103 LAVFHETP-LGYDHFVANCTLQFQELLRTTGASDTFEGWVDLEP------EGKVFVVITLT 156 (157)
T ss_dssp EEEEECCS-SSSCEEEEEEEEEHHHHHHHHTTCSEEEEEEECBS------SCEEEEEEEEC
T ss_pred EEEEECCC-CCCCCEEEEEEEEHHHHHCCCCCCCCCCEEEECCC------CCEEEEEEEEE
T ss_conf 99998998-88898998999998993224577876337998999------93999999997
No 4
>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B
Probab=1.00 E-value=1 Score=156.55 Aligned_cols=120 Identities=23% Similarity=0.294 Sum_probs=106.6
Q ss_pred CCEEEEEEEEEEECCCCCCCCCCCCCEEEEEECCEEEEEECCCCCCCCEEEEEEEEEEECCCCCEEEEEEEECCCCCCCC
Q ss_conf 88099999999427999998898982999999897985100159999968589899743599983999999627999988
Q 001703 534 DGWVLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQA 613 (1024)
Q Consensus 534 ~~~~l~V~vi~a~~L~~~d~~g~~DPyv~i~~~~~~~kT~~~~~t~nP~Wne~f~f~~~~~~~~~l~i~V~D~d~~~~~d 613 (1024)
..+.|.|+|++|+||+++|.+|.+||||++.+++++++|+++++|+||+|||+|.|.+.......|.|+|||+|. +++|
T Consensus 385 ~~~~l~v~v~~a~~L~~~d~~~~sdpyv~v~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~~~~~~l~~~v~d~d~-~~~~ 463 (510)
T 3jzy_A 385 GIGRLMVHVIEATELKACKPNGKSNPYCEISMGSQSYTTRTIQDTLNPKWNFNCQFFIKDLYQDVLCLTLFDRDQ-FSPD 463 (510)
T ss_dssp -CEEEEEEEEEEESCCCCSTTSCCCEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEESCTTTCEEEEEEEECCS-SSSC
T ss_pred CCCEEEEEECEEECCCCCCCCCCCCEEEEEEECCEECCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEEEECCC-CCCC
T ss_conf 776699994545369999999997807999999960318856899899327438998348989979999983898-8888
Q ss_pred CCCEEEEEECCCCCCCCC----CCEEEECCCCCCCCCCCEEEEEEEEEC
Q ss_conf 521599999202568774----105998556555665412699999721
Q 001703 614 TSLGHAEINFLKHTSTEL----ADMWVSLEGKLAQSAQSKVHLRIFLEN 658 (1024)
Q Consensus 614 d~iG~~~i~l~~l~~~~~----~~~w~~L~~~~~~~~~g~l~l~i~~~~ 658 (1024)
++||++.+++..+..+.. ...|++|.+. ..|+|++++.+..
T Consensus 464 d~lG~~~~~l~~l~~~~~~~~~~~~~~~l~~~----~~G~i~l~~~l~l 508 (510)
T 3jzy_A 464 DFLGRTEIPVAKIRTEQESKGPMTRRLLLHEV----PTGEVWVRFDLQL 508 (510)
T ss_dssp CEEEEEEEEHHHHHHHHHHHCSCCEEEECBSS----SSCEEEEEEEEEE
T ss_pred CCEEEEEEEHHHHCCCCCCCCCEEEEECCCCC----CCCEEEEEEEEEE
T ss_conf 70389999999925556778844566357887----8836999999997
No 5
>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=155.76 Aligned_cols=125 Identities=22% Similarity=0.310 Sum_probs=109.0
Q ss_pred CCEEEEEEEEEEECCCCCCCCCCCCCEEEEEECCEEEEEECCCCCCCCEEEEEEEEEEECC---CCCEEEEEEEECCCCC
Q ss_conf 8809999999942799999889898299999989798510015999996858989974359---9983999999627999
Q 001703 534 DGWVLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAMEE---PPSVLDVEVFDFDGPF 610 (1024)
Q Consensus 534 ~~~~l~V~vi~a~~L~~~d~~g~~DPyv~i~~~~~~~kT~~~~~t~nP~Wne~f~f~~~~~---~~~~l~i~V~D~d~~~ 610 (1024)
..|.|.|+|++|+||+..|. |.+||||++++++++++|+++++++||+|||+|.|.+... ....|.|+|||+|. +
T Consensus 5 ~~g~L~v~v~~a~~L~~~~~-g~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~~l~i~V~d~d~-~ 82 (140)
T 2dmh_A 5 SSGMLRVIVESASNIPKTKF-GKPDPIVSVIFKDEKKKTKKVDNELNPVWNEILEFDLRGIPLDFSSSLGIIVKDFET-I 82 (140)
T ss_dssp BCCEEEEEEEEEESCCCCSS-SCCCEEEEEECSSCEEECCCCCSCSSCEEEEEEEEECSSCCCCTTCEEEEEEEETTC-S
T ss_pred CCCEEEEEEEEEECCCCCCC-CCCCEEEEEEECCEEEEEEEECCCCCCCCCCEEEEEECCCCCCCCCEEEEEEEECCC-C
T ss_conf 88489999998058998899-989949999999876783404699899617579998316565778889999997987-7
Q ss_pred CCCCCCEEEEEECCCCCCCCCCCEEEE---CCCCCCCCCCCEEEEEEEEECCC
Q ss_conf 988521599999202568774105998---55655566541269999972168
Q 001703 611 DQATSLGHAEINFLKHTSTELADMWVS---LEGKLAQSAQSKVHLRIFLENNN 660 (1024)
Q Consensus 611 ~~dd~iG~~~i~l~~l~~~~~~~~w~~---L~~~~~~~~~g~l~l~i~~~~~~ 660 (1024)
++|++||++.++|..+..+...+.|++ |....+....|+|+|++.+....
T Consensus 83 ~~~~~lG~~~i~l~~l~~~~~~~~w~~l~~l~~~~~~~~~G~l~l~~~~~p~~ 135 (140)
T 2dmh_A 83 GQNKLIGTATVALKDLTGDQSRSLPYKLISLLNEKGQDTGATIDLVIGYDPPS 135 (140)
T ss_dssp SSCCCCEEEEEEGGGTCSSSCEEEEEEEEEEECTTCCEEEEEEEEEEEECCCB
T ss_pred CCCCEEEEEEEEHHHHCCCCCCEEEEEEEECCCCCCCCCCCEEEEEEEEECCC
T ss_conf 79956899999989944479831688516633788988787899999997899
No 6
>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} SCOP: b.7.1.0 PDB: 3kwt_A*
Probab=1.00 E-value=1 Score=154.73 Aligned_cols=121 Identities=21% Similarity=0.385 Sum_probs=106.4
Q ss_pred CCCEEEEEEEEEEECCCCCCCCCCCCCEEEEEECCEEEEEECCCCCCCCEEEEEEEEEEECCCCCEEEEEEEECCCCC--
Q ss_conf 888099999999427999998898982999999897985100159999968589899743599983999999627999--
Q 001703 533 GDGWVLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPF-- 610 (1024)
Q Consensus 533 ~~~~~l~V~vi~a~~L~~~d~~g~~DPyv~i~~~~~~~kT~~~~~t~nP~Wne~f~f~~~~~~~~~l~i~V~D~d~~~-- 610 (1024)
.+.+.|.|+|++|+||+++|.+|.+||||++.+++++++|+++++++||+|||+|.|.+ ..+...|.++|||+|. +
T Consensus 14 ~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v-~~~~~~l~~~v~d~d~-~~~ 91 (148)
T 3kwu_A 14 KWSAKISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGNLNPVWEENFHFEC-HNSSDRIKVRVLDEDD-DIK 91 (148)
T ss_dssp -CCEEEEEEEEEEESCCCCSTTSCCCEEEEEEETTEEEECCCCCSCSSCEEEEEEEEEE-CSTTCEEEEEEEECCC-SHH
T ss_pred CCCCEEEEEEEEEECCCCCCCCCCCCEEEEEEECCEEEECCCCCCCCCCCCCCEEEEEE-CCCCCEEEEEEEECCC-CCC
T ss_conf 65537999999610998889998918379999999998877557998987246899984-4999989999998998-844
Q ss_pred ---------CCCCCCEEEEEECCCCCCCCCCCEEEECCCCCCC-CCCCEEEEEEEEE
Q ss_conf ---------9885215999992025687741059985565556-6541269999972
Q 001703 611 ---------DQATSLGHAEINFLKHTSTELADMWVSLEGKLAQ-SAQSKVHLRIFLE 657 (1024)
Q Consensus 611 ---------~~dd~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~-~~~g~l~l~i~~~ 657 (1024)
++|++||++.++|..+ ....+.|++|....+. ...|.|+|++.++
T Consensus 92 ~~~~~~~~~~~~~~lG~~~i~l~~l--~~~~~~w~~L~~~~~~~~~~G~i~l~l~~e 146 (148)
T 3kwu_A 92 SRVKQRFKRESDDFLGQTIIEVRTL--SGEMDVWYNLDKRTDKSAVSGAIRLHISVE 146 (148)
T ss_dssp HHHHTTTSSCSSEEEEEEEEEGGGC--CSEEEEEEECBCSSTTCCCCCEEEEEEEEE
T ss_pred CCCCCCCCCCCCCCEEEEEEEHHHC--CCCCCEEEECCCCCCCCCCCEEEEEEEEEE
T ss_conf 3310123577896579999998997--688988998406888888766899999999
No 7
>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1
Probab=1.00 E-value=1 Score=154.24 Aligned_cols=118 Identities=20% Similarity=0.342 Sum_probs=101.3
Q ss_pred CCEEEEEEEEEEECCCCCCCCCC-----------CCCEEEEEECCEE-EEEECCCCCCCCEEEEEEEEEEECCCCCEEEE
Q ss_conf 88099999999427999998898-----------9829999998979-85100159999968589899743599983999
Q 001703 534 DGWVLTVALVEGVNLASSEMTGL-----------SDPYVVFTCNGKT-RTSSVQLQTCDPQWHDILEFDAMEEPPSVLDV 601 (1024)
Q Consensus 534 ~~~~l~V~vi~a~~L~~~d~~g~-----------~DPyv~i~~~~~~-~kT~~~~~t~nP~Wne~f~f~~~~~~~~~l~i 601 (1024)
..|.|.|+|++|+||++.|.+|+ +||||++.+++.. .+|+++++|+||+|||+|.|.+... ..|.|
T Consensus 4 ~~g~L~v~v~~a~~L~~~d~~~~~~~g~~~~~~~~DPyv~v~l~~~~~~~T~~~~~t~nP~WnE~f~f~v~~~--~~L~~ 81 (136)
T 1gmi_A 4 FNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWHDEFVTDVCNG--RKIEL 81 (136)
T ss_dssp EEEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEEE--CEEEE
T ss_pred CCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCEEEEEEEEECCCCCCCCCCEEEEEECCC--CEEEE
T ss_conf 4408999999686999866365113355467767695899998996700335787996974488899980689--99999
Q ss_pred EEEECCCCCCCCCCCEEEEEECCCCCCCC--CCCEEEECCCCCCCCCCCEEEEEEEEECCC
Q ss_conf 99962799998852159999920256877--410599855655566541269999972168
Q 001703 602 EVFDFDGPFDQATSLGHAEINFLKHTSTE--LADMWVSLEGKLAQSAQSKVHLRIFLENNN 660 (1024)
Q Consensus 602 ~V~D~d~~~~~dd~iG~~~i~l~~l~~~~--~~~~w~~L~~~~~~~~~g~l~l~i~~~~~~ 660 (1024)
+|||+|. +++|++||++.+++.++..+. ..+.|++|++ .|+|+|++.+....
T Consensus 82 ~V~d~d~-~~~dd~iG~~~i~l~~l~~~~~~~~~~w~~L~~------~G~i~l~l~~~~~~ 135 (136)
T 1gmi_A 82 AVFHDAP-IGYDDFVANCTIQFEELLQNGSRHFEDWIDLEP------EGKVYVIIDLSGSS 135 (136)
T ss_dssp EEEECCS-SSSCEEEEEEEEEHHHHTSTTCSEEEEEEECBS------SCEEEEEEEEEEEE
T ss_pred EEEECCC-CCCCCEEEEEEEEHHHHCCCCCCCCCEEEECCC------CEEEEEEEEEEECC
T ss_conf 9996998-888988999999889921057987117898599------80999999999168
No 8
>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1
Probab=1.00 E-value=1 Score=153.52 Aligned_cols=122 Identities=23% Similarity=0.383 Sum_probs=107.0
Q ss_pred CCCCEEEEEEEEEEECCCCCCCCCCCCCEEEEEECCEEEEEECCCCCCCCEEEEEEEEEEECCCCCEEEEEEEECCCCCC
Q ss_conf 48880999999994279999988989829999998979851001599999685898997435999839999996279999
Q 001703 532 QGDGWVLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFD 611 (1024)
Q Consensus 532 ~~~~~~l~V~vi~a~~L~~~d~~g~~DPyv~i~~~~~~~kT~~~~~t~nP~Wne~f~f~~~~~~~~~l~i~V~D~d~~~~ 611 (1024)
....+.|.|+|++|+||++.|..|.+||||++++++++++|+++++++||+|||+|.|.+ ..+...|.|+|||+|. ++
T Consensus 9 ~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~-~~~~~~l~i~V~d~d~-~~ 86 (133)
T 2ep6_A 9 VKDVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPI-KDIHDVLEVTVFDEDG-DK 86 (133)
T ss_dssp CCCSEEEEEEEEEEESCCCSSSSSCCCEEEEEEETTEEEECCCCSSCSSCCCCEEEEEEE-SCTTCEEEEEEEEEET-TE
T ss_pred CCCCEEEEEEEEEEECCCCCCCCCCCCEEEEEEECCEEEEEEEECCCCCCCCCCEEEEEE-CCCCCEEEEEEEECCC-CC
T ss_conf 687419999999527898877898938599999999988814135999981456899984-5999999999998989-98
Q ss_pred CCCCCEEEEEECCCCCCCCCCCEEEECCCCCC-CCCCCEEEEEEEEE
Q ss_conf 88521599999202568774105998556555-66541269999972
Q 001703 612 QATSLGHAEINFLKHTSTELADMWVSLEGKLA-QSAQSKVHLRIFLE 657 (1024)
Q Consensus 612 ~dd~iG~~~i~l~~l~~~~~~~~w~~L~~~~~-~~~~g~l~l~i~~~ 657 (1024)
+|++||++.+++..+..+. ..|++|..... ....|+|+|.+.+.
T Consensus 87 ~~~~lG~~~i~l~~l~~~~--~~w~~L~~~~~~~~~~G~i~l~i~~~ 131 (133)
T 2ep6_A 87 PPDFLGKVAIPLLSIRDGQ--PNCYVLKNKDLEQAFKGVIYLEMDLI 131 (133)
T ss_dssp EEEECCBCEEEGGGCCSSC--CEECCCBCSCTTSCCSSEEEEEEEEE
T ss_pred CCCEEEEEEEEHHHCCCCC--CEEEEEECCCCCCCCCEEEEEEEEEE
T ss_conf 9973699999999956899--56998216888886156999999999
No 9
>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus}
Probab=1.00 E-value=1 Score=153.33 Aligned_cols=113 Identities=19% Similarity=0.239 Sum_probs=99.0
Q ss_pred CEEEEEEEEEEECCCCCCCCCCCCCEEEEEECCEEEEEECCCCCCCCEEEEEEEEEEE-CCCCCEEEEEEEECCCCCCCC
Q ss_conf 8099999999427999998898982999999897985100159999968589899743-599983999999627999988
Q 001703 535 GWVLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAM-EEPPSVLDVEVFDFDGPFDQA 613 (1024)
Q Consensus 535 ~~~l~V~vi~a~~L~~~d~~g~~DPyv~i~~~~~~~kT~~~~~t~nP~Wne~f~f~~~-~~~~~~l~i~V~D~d~~~~~d 613 (1024)
.+.|.|+|++|+||+. |.+|++||||+|++++++++|+++++++||+|||+|.|.+. ......|.|+|||+|. +++|
T Consensus 393 ~~~L~V~V~~A~~L~~-D~~g~sDPYV~v~l~~~~~kTkvik~tlNP~Wne~f~f~~~~~~~~~~L~~~V~D~D~-~~~d 470 (540)
T 3nsj_A 393 LAHLVVSNFRAEHLWG-DYTTATDAYLKVFFGGQEFRTGVVWNNNNPRWTDKMDFENVLLSTGGPLRVQVWDADY-GWDD 470 (540)
T ss_dssp EEEEEEEEEEEESCCC-SSCSCCCEEEEEEETTEEEECCCBCSCSSCBCCCCEEEEEEETTTCCCEEEEEEECCS-SSCC
T ss_pred CCEEEEEEEECCCCCC-CCCCCCCEEEEEEECCEEEEEEEECCCCCCCCCEEEEEEEECCCCCCEEEEEEEECCC-CCCC
T ss_conf 6479999998228970-3389838399999998814633316998997871899987647899879999998989-9899
Q ss_pred CCCEEEEEECCCCCCCCCCCEEEECCCCCCCCCCCEEEEEEEEECCC
Q ss_conf 52159999920256877410599855655566541269999972168
Q 001703 614 TSLGHAEINFLKHTSTELADMWVSLEGKLAQSAQSKVHLRIFLENNN 660 (1024)
Q Consensus 614 d~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~g~l~l~i~~~~~~ 660 (1024)
|+||++.++|.. +..+.|++|+ .|.|++++++...+
T Consensus 471 D~LG~~~~~L~~----g~~~~~~~l~-------~G~l~~~~~~~c~p 506 (540)
T 3nsj_A 471 DLLGSCDRSPHS----GFHEVTCELN-------HGRVKFSYHAKCLP 506 (540)
T ss_dssp EEEEEEEECCCS----EEEEEEEECS-------SSEEEEEEEEEECT
T ss_pred CEEEEEEEEEEC----CCEEEEEECC-------CEEEEEEEEEEECC
T ss_conf 888999998628----9178899838-------85899999999878
No 10
>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus}
Probab=1.00 E-value=1 Score=153.17 Aligned_cols=127 Identities=20% Similarity=0.376 Sum_probs=104.9
Q ss_pred CCCEEEEEEEEEEECCCCCCCCCCCCCEEEEEECC------EEEEEECCCCCCCCEEEEEEEEEEECCCCCEEEEEEEEC
Q ss_conf 88809999999942799999889898299999989------798510015999996858989974359998399999962
Q 001703 533 GDGWVLTVALVEGVNLASSEMTGLSDPYVVFTCNG------KTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDF 606 (1024)
Q Consensus 533 ~~~~~l~V~vi~a~~L~~~d~~g~~DPyv~i~~~~------~~~kT~~~~~t~nP~Wne~f~f~~~~~~~~~l~i~V~D~ 606 (1024)
...|.|.|+|++|+||+.+|.+|++||||++++++ .+++|+++++++||+|||.|.|.+. .....|.|+|||+
T Consensus 5 ~~~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~v~-~~~~~L~~~V~d~ 83 (176)
T 3m7f_B 5 DDTRVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFRVL-PQRHRILFEVFDE 83 (176)
T ss_dssp TTCEEEEEEEEEEESCC---CCCCCCEEEEEEEEETTTEEEEEEECCCCSSCSSCEEEEEEEEEEC-TTTCEEEEEEEEC
T ss_pred CCCEEEEEEEEEEECCCCCCCCCCCCCEEEEEEECCCCCCCCCEECCEECCCCCCCCCCEEEEEEC-CCCCEEEEEEEEC
T ss_conf 871799999997368987678989581899999887788651165761779999864666999975-9999799999989
Q ss_pred CCCCCCCCCCEEEEEECCCCCCCCCC-C-----EEEECCCCCCC-CCCCEEEEEEEEECCCC
Q ss_conf 79999885215999992025687741-0-----59985565556-65412699999721688
Q 001703 607 DGPFDQATSLGHAEINFLKHTSTELA-D-----MWVSLEGKLAQ-SAQSKVHLRIFLENNNG 661 (1024)
Q Consensus 607 d~~~~~dd~iG~~~i~l~~l~~~~~~-~-----~w~~L~~~~~~-~~~g~l~l~i~~~~~~~ 661 (1024)
|. +++|++||++.++|..+..+... + .||+|..+... ...|.|+|++.+....+
T Consensus 84 d~-~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~l~~~p~~~ 144 (176)
T 3m7f_B 84 NR-LTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHPRSHKSRVKGYLRLKMTYLPKNG 144 (176)
T ss_dssp C-----CEEEEEEEEESCSCCBC------CCCCEEEECBCSSTTCCCCSEEEEEEEECC---
T ss_pred CC-CCCCCEEEEEEEEHHHCCCCCCCCCCCCCCCEEECCCCCCCCCCCEEEEEEEEEEECCC
T ss_conf 88-77896779999998994556775454443117883356788965779999999980999
Done!