Query 001704
Match_columns 1024
No_of_seqs 589 out of 4434
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 07:19:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001704.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001704hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 2.9E-35 6.4E-40 377.0 27.5 507 286-861 68-590 (968)
2 PLN00113 leucine-rich repeat r 100.0 1.2E-34 2.6E-39 371.3 26.8 479 312-859 69-564 (968)
3 KOG4341 F-box protein containi 99.9 2.8E-27 6E-32 246.7 9.9 384 225-851 73-461 (483)
4 KOG2120 SCF ubiquitin ligase, 99.9 6.4E-24 1.4E-28 211.5 7.8 268 224-509 98-374 (419)
5 KOG4194 Membrane glycoprotein 99.9 3.9E-24 8.5E-29 230.6 4.0 359 429-851 81-448 (873)
6 KOG4194 Membrane glycoprotein 99.9 1.1E-23 2.3E-28 227.3 5.7 356 382-826 80-448 (873)
7 KOG0618 Serine/threonine phosp 99.8 2.1E-22 4.5E-27 229.3 -3.6 122 314-462 23-147 (1081)
8 KOG0618 Serine/threonine phosp 99.8 1E-22 2.2E-27 231.9 -6.6 133 713-855 357-489 (1081)
9 KOG0472 Leucine-rich repeat pr 99.8 9.2E-24 2E-28 218.4 -15.9 457 284-854 65-540 (565)
10 KOG0444 Cytoskeletal regulator 99.8 3.2E-21 7E-26 209.1 -3.5 357 379-856 6-376 (1255)
11 KOG0444 Cytoskeletal regulator 99.8 4.6E-21 9.9E-26 207.9 -5.8 364 311-803 6-376 (1255)
12 KOG0472 Leucine-rich repeat pr 99.7 2.7E-21 5.9E-26 200.3 -12.9 456 314-853 47-516 (565)
13 PLN03210 Resistant to P. syrin 99.7 1.2E-16 2.6E-21 205.1 19.2 294 650-1003 632-947 (1153)
14 PLN03210 Resistant to P. syrin 99.7 4E-16 8.6E-21 200.4 22.2 309 453-828 590-904 (1153)
15 KOG4341 F-box protein containi 99.7 1.3E-17 2.8E-22 174.9 6.0 299 400-858 138-442 (483)
16 cd00116 LRR_RI Leucine-rich re 99.5 1E-12 2.2E-17 146.7 17.8 181 267-462 3-203 (319)
17 cd00116 LRR_RI Leucine-rich re 99.4 4.4E-12 9.5E-17 141.6 15.4 241 264-508 25-317 (319)
18 PRK15387 E3 ubiquitin-protein 99.3 6.4E-12 1.4E-16 149.8 14.1 110 498-640 201-311 (788)
19 KOG4237 Extracellular matrix p 99.3 5.1E-14 1.1E-18 146.8 -3.2 90 760-854 268-358 (498)
20 PRK15387 E3 ubiquitin-protein 99.3 1.7E-11 3.7E-16 146.2 13.5 254 534-855 205-458 (788)
21 KOG4237 Extracellular matrix p 99.2 3.6E-13 7.9E-18 140.6 -6.0 133 288-440 68-202 (498)
22 KOG1909 Ran GTPase-activating 99.1 7.1E-10 1.5E-14 115.1 10.9 227 279-510 22-310 (382)
23 PRK15370 E3 ubiquitin-protein 99.1 9.7E-10 2.1E-14 132.3 13.9 250 498-831 178-429 (754)
24 KOG2120 SCF ubiquitin ligase, 99.1 1.1E-10 2.4E-15 117.7 4.5 197 288-502 186-391 (419)
25 PRK15370 E3 ubiquitin-protein 99.0 1.3E-09 2.9E-14 131.2 12.0 252 473-809 178-434 (754)
26 KOG1909 Ran GTPase-activating 98.9 1.8E-09 3.9E-14 112.1 7.6 262 547-854 26-310 (382)
27 KOG1947 Leucine rich repeat pr 98.9 3.9E-10 8.5E-15 133.8 1.8 68 396-463 239-306 (482)
28 KOG0617 Ras suppressor protein 98.9 6.4E-11 1.4E-15 109.7 -4.5 135 680-830 52-186 (264)
29 PF12937 F-box-like: F-box-lik 98.8 1.9E-09 4.1E-14 81.2 2.7 46 224-269 1-46 (47)
30 KOG0617 Ras suppressor protein 98.8 1E-10 2.3E-15 108.3 -5.0 151 683-853 32-184 (264)
31 KOG3207 Beta-tubulin folding c 98.8 3.2E-09 7E-14 113.2 4.4 82 894-975 246-340 (505)
32 KOG3207 Beta-tubulin folding c 98.8 3.5E-09 7.7E-14 112.9 4.3 206 397-619 118-335 (505)
33 PF14580 LRR_9: Leucine-rich r 98.8 6.6E-09 1.4E-13 101.8 5.8 132 713-853 17-151 (175)
34 KOG1947 Leucine rich repeat pr 98.7 2E-08 4.3E-13 119.2 9.2 251 308-626 184-443 (482)
35 KOG1259 Nischarin, modulator o 98.7 1E-08 2.2E-13 103.7 4.4 132 712-855 281-412 (490)
36 PF14580 LRR_9: Leucine-rich r 98.6 4.8E-08 1E-12 95.8 5.2 132 680-826 15-149 (175)
37 KOG4658 Apoptotic ATPase [Sign 98.6 4.8E-08 1E-12 119.7 4.9 108 651-776 570-678 (889)
38 COG5238 RNA1 Ran GTPase-activa 98.4 8.7E-07 1.9E-11 88.9 9.7 174 286-462 29-252 (388)
39 KOG4658 Apoptotic ATPase [Sign 98.3 1E-06 2.2E-11 108.3 6.8 221 310-535 543-786 (889)
40 KOG1259 Nischarin, modulator o 98.2 5.3E-07 1.2E-11 91.5 2.7 84 762-853 280-363 (490)
41 smart00256 FBOX A Receptor for 98.2 1.9E-06 4.1E-11 62.9 4.4 40 227-266 1-40 (41)
42 PF13855 LRR_8: Leucine rich r 98.1 2E-06 4.4E-11 69.0 3.3 60 766-829 1-61 (61)
43 KOG1859 Leucine-rich repeat pr 98.1 1.8E-07 3.8E-12 105.7 -4.2 127 716-855 165-292 (1096)
44 PF00646 F-box: F-box domain; 98.1 1.1E-06 2.4E-11 66.6 1.0 43 223-265 2-44 (48)
45 KOG3665 ZYG-1-like serine/thre 98.0 3E-06 6.6E-11 101.5 4.3 138 713-854 146-287 (699)
46 KOG2982 Uncharacterized conser 98.0 1E-05 2.3E-10 82.5 6.6 186 309-514 68-265 (418)
47 KOG0532 Leucine-rich repeat (L 98.0 5E-07 1.1E-11 99.8 -3.0 151 682-854 96-246 (722)
48 KOG3665 ZYG-1-like serine/thre 97.9 1.2E-05 2.6E-10 96.5 6.8 135 715-853 122-261 (699)
49 KOG2982 Uncharacterized conser 97.9 1.3E-05 2.8E-10 81.8 5.0 221 572-825 61-287 (418)
50 PLN03150 hypothetical protein; 97.9 2.6E-05 5.7E-10 94.0 8.2 107 743-855 420-528 (623)
51 COG5238 RNA1 Ran GTPase-activa 97.8 0.00014 3.1E-09 73.4 10.5 196 265-462 33-282 (388)
52 PF13855 LRR_8: Leucine rich r 97.8 1.5E-05 3.2E-10 64.0 2.3 60 312-371 1-60 (61)
53 COG4886 Leucine-rich repeat (L 97.7 3.8E-05 8.2E-10 88.3 4.8 135 709-856 157-291 (394)
54 COG4886 Leucine-rich repeat (L 97.6 3E-05 6.5E-10 89.1 3.5 150 652-831 140-291 (394)
55 PLN03150 hypothetical protein; 97.6 8.1E-05 1.8E-09 89.8 5.9 85 288-373 419-503 (623)
56 KOG0532 Leucine-rich repeat (L 97.5 1.7E-05 3.7E-10 88.0 -1.2 126 686-827 145-270 (722)
57 PRK15386 type III secretion pr 97.4 0.00067 1.5E-08 75.0 10.0 35 765-802 51-85 (426)
58 PRK15386 type III secretion pr 97.4 0.00056 1.2E-08 75.7 8.9 40 580-627 50-89 (426)
59 PF12799 LRR_4: Leucine Rich r 97.3 0.0003 6.6E-09 51.6 4.3 38 766-804 1-38 (44)
60 KOG0531 Protein phosphatase 1, 97.1 5E-05 1.1E-09 87.5 -2.6 61 547-621 91-151 (414)
61 KOG1859 Leucine-rich repeat pr 97.1 8.4E-05 1.8E-09 84.8 -1.3 105 304-411 179-290 (1096)
62 KOG2739 Leucine-rich acidic nu 97.0 0.00026 5.6E-09 72.0 1.4 114 735-854 37-155 (260)
63 KOG4579 Leucine-rich repeat (L 96.7 0.00035 7.6E-09 63.5 -0.3 87 760-853 47-134 (177)
64 KOG0531 Protein phosphatase 1, 96.7 0.00022 4.9E-09 82.1 -2.1 106 680-800 91-197 (414)
65 KOG3864 Uncharacterized conser 96.6 0.0016 3.6E-08 63.5 3.4 68 394-462 119-186 (221)
66 KOG1644 U2-associated snRNP A' 96.5 0.0029 6.2E-08 61.8 4.5 35 766-800 88-124 (233)
67 KOG1644 U2-associated snRNP A' 96.5 0.0022 4.8E-08 62.6 3.6 94 314-409 44-149 (233)
68 PF12799 LRR_4: Leucine Rich r 96.3 0.0069 1.5E-07 44.5 4.5 39 742-782 2-40 (44)
69 KOG4579 Leucine-rich repeat (L 96.3 0.0013 2.8E-08 59.9 0.4 110 715-831 27-137 (177)
70 KOG3864 Uncharacterized conser 96.2 0.0016 3.5E-08 63.6 1.0 66 711-776 121-186 (221)
71 KOG2123 Uncharacterized conser 96.1 0.0007 1.5E-08 68.9 -2.1 102 715-823 19-123 (388)
72 KOG0281 Beta-TrCP (transducin 96.1 0.0046 1E-07 64.3 3.4 50 220-269 71-124 (499)
73 KOG2997 F-box protein FBX9 [Ge 95.8 0.0049 1.1E-07 64.0 2.4 46 222-267 105-155 (366)
74 KOG2739 Leucine-rich acidic nu 95.8 0.0051 1.1E-07 62.9 2.5 86 713-798 63-152 (260)
75 KOG2123 Uncharacterized conser 95.3 0.0013 2.8E-08 67.0 -3.8 102 740-848 18-123 (388)
76 PF13306 LRR_5: Leucine rich r 94.4 0.082 1.8E-06 49.6 6.0 81 737-826 31-112 (129)
77 KOG4308 LRR-containing protein 93.8 0.0066 1.4E-07 70.1 -3.4 90 713-805 202-305 (478)
78 KOG4308 LRR-containing protein 93.7 0.0053 1.1E-07 70.9 -4.4 140 715-856 144-304 (478)
79 smart00367 LRR_CC Leucine-rich 93.0 0.1 2.2E-06 33.3 2.6 24 425-448 1-24 (26)
80 PLN03215 ascorbic acid mannose 92.5 0.11 2.4E-06 57.3 3.7 37 223-259 3-40 (373)
81 PF13306 LRR_5: Leucine rich r 91.6 0.23 5.1E-06 46.5 4.5 104 737-851 8-112 (129)
82 smart00367 LRR_CC Leucine-rich 91.1 0.22 4.8E-06 31.7 2.5 24 399-422 1-24 (26)
83 PF00560 LRR_1: Leucine Rich R 90.7 0.12 2.6E-06 31.5 0.9 20 767-786 1-20 (22)
84 PF13504 LRR_7: Leucine rich r 89.0 0.29 6.3E-06 27.6 1.6 15 767-781 2-16 (17)
85 PF13516 LRR_6: Leucine Rich r 85.5 0.73 1.6E-05 28.6 2.1 23 425-448 1-23 (24)
86 PF13516 LRR_6: Leucine Rich r 83.9 0.91 2E-05 28.2 2.0 23 311-333 1-23 (24)
87 PF13013 F-box-like_2: F-box-l 80.0 2.1 4.6E-05 38.3 3.6 29 224-252 22-50 (109)
88 KOG0274 Cdc4 and related F-box 76.2 1.2 2.6E-05 52.5 1.3 46 220-265 104-149 (537)
89 smart00368 LRR_RI Leucine rich 73.6 5 0.00011 26.1 3.1 24 426-450 2-25 (28)
90 smart00370 LRR Leucine-rich re 69.2 4.1 9E-05 25.7 2.0 20 765-784 1-20 (26)
91 smart00369 LRR_TYP Leucine-ric 69.2 4.1 9E-05 25.7 2.0 20 765-784 1-20 (26)
92 smart00368 LRR_RI Leucine rich 62.9 11 0.00024 24.4 3.1 19 817-835 2-20 (28)
93 KOG3763 mRNA export factor TAP 58.0 11 0.00023 43.4 4.0 33 816-848 269-307 (585)
94 KOG3763 mRNA export factor TAP 57.9 13 0.00028 42.8 4.6 81 378-460 216-309 (585)
95 smart00364 LRR_BAC Leucine-ric 55.2 7.2 0.00016 24.8 1.1 18 766-783 2-19 (26)
96 PF09372 PRANC: PRANC domain; 52.2 13 0.00029 32.7 2.9 26 222-247 70-95 (97)
97 smart00365 LRR_SD22 Leucine-ri 47.7 15 0.00032 23.5 1.7 16 766-781 2-17 (26)
98 KOG3926 F-box proteins [Amino 37.8 19 0.00041 37.2 1.7 46 222-267 200-246 (332)
99 KOG4242 Predicted myosin-I-bin 31.2 2.2E+02 0.0047 32.6 8.5 142 711-854 296-452 (553)
100 KOG0473 Leucine-rich repeat pr 24.9 2.1 4.6E-05 43.2 -7.2 85 739-830 40-124 (326)
101 PF07723 LRR_2: Leucine Rich R 23.5 72 0.0016 20.3 1.9 9 402-410 2-10 (26)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=2.9e-35 Score=376.96 Aligned_cols=507 Identities=20% Similarity=0.184 Sum_probs=376.1
Q ss_pred CCCceEEEEcCCCchhHHHHHHHhcCCCCCEEEccCcccchHHHHhhc-CCCCCCEEEecCCCCCCCcccccccCCcccE
Q 001704 286 YPNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALA-DCSMLKSLNVNDATLGNGVQEIPINHDQLRR 364 (1024)
Q Consensus 286 ~~~l~~L~L~~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~~~~~~l~-~~~~L~~L~L~~~~l~~~l~~~~~~~~~L~~ 364 (1024)
..+|+.|++++ +.+....+.++..+++|+.|+|++|.+.+.++..+. .+++|++|++++|.+.+.+|. ..+++|++
T Consensus 68 ~~~v~~L~L~~-~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~ 144 (968)
T PLN00113 68 SSRVVSIDLSG-KNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLET 144 (968)
T ss_pred CCcEEEEEecC-CCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCE
Confidence 35799999998 566777788899999999999999999877776655 899999999999999887764 45789999
Q ss_pred EEecccccchh-c---ccCCCCceecccCccHH----HHHhcCCCccEEEEeCCCCCChHHHHHHHhcCCCCCEEEecCC
Q 001704 365 LEITKCRVMRV-S---IRCPQLEHLSLKRSNMA----QAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNC 436 (1024)
Q Consensus 365 L~L~~~~~~~~-~---~~~~~L~~L~L~~~~l~----~~~~~~~~L~~L~L~~~~~i~~~~l~~~~~~~~~L~~L~L~~~ 436 (1024)
|+|++|.+... + ..+++|++|++++|.+. ..+.++++|++|++++|. ++ ..++..+..+++|++|++++|
T Consensus 145 L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~-l~-~~~p~~l~~l~~L~~L~L~~n 222 (968)
T PLN00113 145 LDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQ-LV-GQIPRELGQMKSLKWIYLGYN 222 (968)
T ss_pred EECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCC-Cc-CcCChHHcCcCCccEEECcCC
Confidence 99999987632 2 36889999999988764 557788999999998884 43 234566778899999999988
Q ss_pred CcCChHHHHHHHHhCCcccEEeccCCC---CCCccccCCCCccEEEecCCCCCChhHHHhhhcCCCccEEEecCCCCCcc
Q 001704 437 SCVSDESLREIALSCANLRILNSSYCP---NISLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTS 513 (1024)
Q Consensus 437 ~~l~~~~l~~l~~~~~~L~~L~L~~~~---~l~~~~~~~~~L~~L~L~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~ 513 (1024)
. +++..+..+. ++++|++|++++|. .++..+..+++|++|++++| .+....+..+..+++|+.|++++|...+.
T Consensus 223 ~-l~~~~p~~l~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n-~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ 299 (968)
T PLN00113 223 N-LSGEIPYEIG-GLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQN-KLSGPIPPSIFSLQKLISLDLSDNSLSGE 299 (968)
T ss_pred c-cCCcCChhHh-cCCCCCEEECcCceeccccChhHhCCCCCCEEECcCC-eeeccCchhHhhccCcCEEECcCCeeccC
Confidence 7 6555555554 78899999998886 45667778889999999886 55555666777888899999988877666
Q ss_pred ccccCCcCceEeeccccccccccccccccccc---ccccccccceecccccccccccccchhhHHHHHHhcCcccEEecc
Q 001704 514 VSLELPRLQNIRLVHCRKFADLNLRAMMLSSI---MVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLT 590 (1024)
Q Consensus 514 ~~~~~~~L~~L~l~~c~~L~~l~l~~~~l~~l---~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~L~~L~Ls 590 (1024)
+|..+. .+++|+.+++.+|.+... .+..+++|+.|++++|.+.+..+... ..+++|+.|+++
T Consensus 300 ~p~~~~--------~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l-------~~~~~L~~L~Ls 364 (968)
T PLN00113 300 IPELVI--------QLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNL-------GKHNNLTVLDLS 364 (968)
T ss_pred CChhHc--------CCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHH-------hCCCCCcEEECC
Confidence 554322 122233333334433322 35667777777777777765432211 145677778877
Q ss_pred CCcCchhhhhhhhcCCCCCCCccEEeccCCCCCceeccccCccceeecccCcccccccccCCCccEEEcCCCCCcccccc
Q 001704 591 DCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVVRFCSTSLVSLSLVGCRAITALELKCPILEKVCLDGCDHIESASF 670 (1024)
Q Consensus 591 ~c~~l~~~~~~~l~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~l~l~~~~~l~~l~~~~~~L~~L~l~~c~~l~~~~~ 670 (1024)
+| .+++..+..+ ..+++|+.|++.+|. ++.. +......+++|+.|++++|.... .
T Consensus 365 ~n-~l~~~~p~~~---~~~~~L~~L~l~~n~-l~~~-----------------~p~~~~~~~~L~~L~L~~n~l~~---~ 419 (968)
T PLN00113 365 TN-NLTGEIPEGL---CSSGNLFKLILFSNS-LEGE-----------------IPKSLGACRSLRRVRLQDNSFSG---E 419 (968)
T ss_pred CC-eeEeeCChhH---hCcCCCCEEECcCCE-eccc-----------------CCHHHhCCCCCCEEECcCCEeee---E
Confidence 73 6666555555 456677777777765 2211 11112246788888888875432 3
Q ss_pred cccccceeeccCCCCccccccccccceEEeeecccccCccccCCCcccEEecccCCCCchhhHhhhhhcCCCccEEEecc
Q 001704 671 VPVALQSLNLGICPKLSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMS 750 (1024)
Q Consensus 671 ~p~~L~~L~l~~~~~L~~L~l~~n~l~~l~l~~~~~l~~~~~~~~~L~~L~L~~~~~l~d~~l~~~~~~~~~L~~L~L~~ 750 (1024)
.|.. +..++.|+.+++++|.+. +.++..+..+++|+.|++++|. +. ..++..+ ..++|+.|++++
T Consensus 420 ~p~~-----~~~l~~L~~L~Ls~N~l~-------~~~~~~~~~l~~L~~L~L~~n~-~~-~~~p~~~-~~~~L~~L~ls~ 484 (968)
T PLN00113 420 LPSE-----FTKLPLVYFLDISNNNLQ-------GRINSRKWDMPSLQMLSLARNK-FF-GGLPDSF-GSKRLENLDLSR 484 (968)
T ss_pred CChh-----HhcCCCCCEEECcCCccc-------CccChhhccCCCCcEEECcCce-ee-eecCccc-ccccceEEECcC
Confidence 4443 678889999999999886 6677777789999999999984 44 2334333 457899999999
Q ss_pred CCCCCchhhhhhccCCCCCEEecCCCccCC-chhhhhcCCCCcEEEecCCCCcchhhhHhhhhcCCCCCCcEEeCCCCcc
Q 001704 751 CQSIGPDGLYSLRSLQNLTMLDLSYTFLTN-LEPVFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTL 829 (1024)
Q Consensus 751 ~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~-l~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~l~~L~~L~l~~n~l 829 (1024)
|... ...+..+..+++|+.|+|++|.+.+ +|..+..+++|++|++++|. +++..+..+ ..+++|+.|++++|.+
T Consensus 485 n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~~---~~l~~L~~L~Ls~N~l 559 (968)
T PLN00113 485 NQFS-GAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQ-LSGQIPASF---SEMPVLSQLDLSQNQL 559 (968)
T ss_pred CccC-CccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCc-ccccCChhH---hCcccCCEEECCCCcc
Confidence 9854 3445678889999999999999986 67788999999999999988 888777776 7889999999999999
Q ss_pred chHHHHHHHhhCCcccEEEecCCCCccccccc
Q 001704 830 CQSAIEELLAYCTHLTHVSLNGCGNMHDLNWG 861 (1024)
Q Consensus 830 ~~~~~~~~l~~~~~L~~L~l~~c~~l~~~~~~ 861 (1024)
++ .+|..+..+++|+.|++++|+....+|..
T Consensus 560 ~~-~~p~~l~~l~~L~~l~ls~N~l~~~~p~~ 590 (968)
T PLN00113 560 SG-EIPKNLGNVESLVQVNISHNHLHGSLPST 590 (968)
T ss_pred cc-cCChhHhcCcccCEEeccCCcceeeCCCc
Confidence 76 57778888999999999999877666543
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.2e-34 Score=371.27 Aligned_cols=479 Identities=20% Similarity=0.215 Sum_probs=370.0
Q ss_pred CCCCEEEccCcccchHHHHhhcCCCCCCEEEecCCCCCCCccccc-ccCCcccEEEecccccchhc--ccCCCCceeccc
Q 001704 312 RNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIP-INHDQLRRLEITKCRVMRVS--IRCPQLEHLSLK 388 (1024)
Q Consensus 312 ~~L~~L~L~~~~i~~~~~~~l~~~~~L~~L~L~~~~l~~~l~~~~-~~~~~L~~L~L~~~~~~~~~--~~~~~L~~L~L~ 388 (1024)
.+++.|+|+++.+.+..+..+..+++|+.|+|++|.+.+.+|... ..+.+|++|+|++|.+.... ..+++|++|+|+
T Consensus 69 ~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls 148 (968)
T PLN00113 69 SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLS 148 (968)
T ss_pred CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECc
Confidence 468899999999998888899999999999999999988777654 48999999999999876422 368999999999
Q ss_pred CccHH----HHHhcCCCccEEEEeCCCCCChHHHHHHHhcCCCCCEEEecCCCcCChHHHHHHHHhCCcccEEeccCCC-
Q 001704 389 RSNMA----QAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCP- 463 (1024)
Q Consensus 389 ~~~l~----~~~~~~~~L~~L~L~~~~~i~~~~l~~~~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~- 463 (1024)
+|.+. ..+..+++|++|++++|. +. ..++..+.++++|++|++++|. ++...+..+. .+++|++|++++|.
T Consensus 149 ~n~~~~~~p~~~~~l~~L~~L~L~~n~-l~-~~~p~~~~~l~~L~~L~L~~n~-l~~~~p~~l~-~l~~L~~L~L~~n~l 224 (968)
T PLN00113 149 NNMLSGEIPNDIGSFSSLKVLDLGGNV-LV-GKIPNSLTNLTSLEFLTLASNQ-LVGQIPRELG-QMKSLKWIYLGYNNL 224 (968)
T ss_pred CCcccccCChHHhcCCCCCEEECccCc-cc-ccCChhhhhCcCCCeeeccCCC-CcCcCChHHc-CcCCccEEECcCCcc
Confidence 98765 557889999999999984 33 2345566889999999999997 6555455554 88999999999986
Q ss_pred --CCCccccCCCCccEEEecCCCCCChhHHHhhhcCCCccEEEecCCCCCccccccC---CcCceEeecccccccccccc
Q 001704 464 --NISLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLEL---PRLQNIRLVHCRKFADLNLR 538 (1024)
Q Consensus 464 --~l~~~~~~~~~L~~L~L~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~---~~L~~L~l~~c~~L~~l~l~ 538 (1024)
.++..+..+++|++|++++| .+....+..+..+++|+.|++++|...+.+|..+ ++|+.|.+ +
T Consensus 225 ~~~~p~~l~~l~~L~~L~L~~n-~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L-----------s 292 (968)
T PLN00113 225 SGEIPYEIGGLTSLNHLDLVYN-NLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDL-----------S 292 (968)
T ss_pred CCcCChhHhcCCCCCEEECcCc-eeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEEC-----------c
Confidence 46677788999999999987 5666667778889999999999998766665443 34444444 3
Q ss_pred ccccccc---ccccccccceecccccccccccccchhhHHHHHHhcCcccEEeccCCcCchhhhhhhhcCCCCCCCccEE
Q 001704 539 AMMLSSI---MVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSL 615 (1024)
Q Consensus 539 ~~~l~~l---~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~L~~L~Ls~c~~l~~~~~~~l~~~~~~~~L~~L 615 (1024)
.+.+... .+.++++|+.|++++|.+.+..+... ..+++|+.|++++| .+++..+..+ +.+++|+.|
T Consensus 293 ~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~-------~~l~~L~~L~L~~n-~l~~~~p~~l---~~~~~L~~L 361 (968)
T PLN00113 293 DNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVAL-------TSLPRLQVLQLWSN-KFSGEIPKNL---GKHNNLTVL 361 (968)
T ss_pred CCeeccCCChhHcCCCCCcEEECCCCccCCcCChhH-------hcCCCCCEEECcCC-CCcCcCChHH---hCCCCCcEE
Confidence 4433322 35678888888888888876543221 14678888998884 6776666666 677888888
Q ss_pred eccCCCCCceeccccCccceeecccCcccccccccCCCccEEEcCCCCCcccccccccccceeeccCCCCcccccccccc
Q 001704 616 VLDNCEGLTVVRFCSTSLVSLSLVGCRAITALELKCPILEKVCLDGCDHIESASFVPVALQSLNLGICPKLSTLGIEALH 695 (1024)
Q Consensus 616 ~l~~c~~l~~l~~~~~~l~~l~l~~~~~l~~l~~~~~~L~~L~l~~c~~l~~~~~~p~~L~~L~l~~~~~L~~L~l~~n~ 695 (1024)
++++|. ++.. +.......++|+.|++.++... +..|.. +..+++|+.|++.+|.
T Consensus 362 ~Ls~n~-l~~~-----------------~p~~~~~~~~L~~L~l~~n~l~---~~~p~~-----~~~~~~L~~L~L~~n~ 415 (968)
T PLN00113 362 DLSTNN-LTGE-----------------IPEGLCSSGNLFKLILFSNSLE---GEIPKS-----LGACRSLRRVRLQDNS 415 (968)
T ss_pred ECCCCe-eEee-----------------CChhHhCcCCCCEEECcCCEec---ccCCHH-----HhCCCCCCEEECcCCE
Confidence 888775 3321 1111123467788888876543 234444 6788999999999998
Q ss_pred ceEEeeecccccCccccCCCcccEEecccCCCCchhhHhhhhhcCCCccEEEeccCCCCCchhhhhhccCCCCCEEecCC
Q 001704 696 MVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSY 775 (1024)
Q Consensus 696 l~~l~l~~~~~l~~~~~~~~~L~~L~L~~~~~l~d~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~Ls~ 775 (1024)
+. +.+|..+..++.|+.|++++| .++ ..++..+..+++|+.|++++|...+. .......++|+.|++++
T Consensus 416 l~-------~~~p~~~~~l~~L~~L~Ls~N-~l~-~~~~~~~~~l~~L~~L~L~~n~~~~~--~p~~~~~~~L~~L~ls~ 484 (968)
T PLN00113 416 FS-------GELPSEFTKLPLVYFLDISNN-NLQ-GRINSRKWDMPSLQMLSLARNKFFGG--LPDSFGSKRLENLDLSR 484 (968)
T ss_pred ee-------eECChhHhcCCCCCEEECcCC-ccc-CccChhhccCCCCcEEECcCceeeee--cCcccccccceEEECcC
Confidence 86 678888999999999999998 565 34555667899999999999986543 23334568999999999
Q ss_pred CccCC-chhhhhcCCCCcEEEecCCCCcchhhhHhhhhcCCCCCCcEEeCCCCccchHHHHHHHhhCCcccEEEecCCCC
Q 001704 776 TFLTN-LEPVFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELLAYCTHLTHVSLNGCGN 854 (1024)
Q Consensus 776 n~l~~-l~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l~~c~~ 854 (1024)
|.+.+ +|..+..+++|+.|++++|. +++..+..+ ..+++|++|++++|.+++ .++..+..+++|+.|++++|..
T Consensus 485 n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~p~~~---~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~Ls~N~l 559 (968)
T PLN00113 485 NQFSGAVPRKLGSLSELMQLKLSENK-LSGEIPDEL---SSCKKLVSLDLSHNQLSG-QIPASFSEMPVLSQLDLSQNQL 559 (968)
T ss_pred CccCCccChhhhhhhccCEEECcCCc-ceeeCChHH---cCccCCCEEECCCCcccc-cCChhHhCcccCCEEECCCCcc
Confidence 99986 56688999999999999998 887777776 789999999999999986 5778889999999999999987
Q ss_pred ccccc
Q 001704 855 MHDLN 859 (1024)
Q Consensus 855 l~~~~ 859 (1024)
...+|
T Consensus 560 ~~~~p 564 (968)
T PLN00113 560 SGEIP 564 (968)
T ss_pred cccCC
Confidence 55443
No 3
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.94 E-value=2.8e-27 Score=246.70 Aligned_cols=384 Identities=28% Similarity=0.496 Sum_probs=255.1
Q ss_pred ccCcHHHHHHHHhcCCHHHHHHHHHHhHHHHHhhcCCCcccccccCCC--CCCHHHHHHHHhhCC-CceEEEEcCCCchh
Q 001704 225 MDLTDDLLHMVFSFLDYVDLCRAAIVCRQWRAASAHEDFWRCLNFENR--KISVEQFEDVCQRYP-NATEVNIYGAPAIH 301 (1024)
Q Consensus 225 ~~LP~ell~~If~~L~~~dl~~~~~Vcr~W~~~~~~~~l~~~l~l~~~--~~~~~~l~~l~~~~~-~l~~L~L~~~~~~~ 301 (1024)
-.||+|++.+||++|+...+++++.+|+.|+..+.|..-|.++++... ++...++..+.+|+. .++.|.+++|..+
T Consensus 73 ~~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~~~q~idL~t~~rDv~g~VV~~~~~Rcgg~lk~LSlrG~r~v- 151 (483)
T KOG4341|consen 73 RSLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGSCWQHIDLFTFQRDVDGGVVENMISRCGGFLKELSLRGCRAV- 151 (483)
T ss_pred ccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccccceeeehhcchhcCCCcceehHhhhhccccccccccccccC-
Confidence 459999999999999999999999999999999999999999998652 232333333333322 1222322222111
Q ss_pred HHHHHHHhcCCCCCEEEccCcccchHHHHhhcCCCCCCEEEecCCCCCCCcccccccCCcccEEEecccccchhcccCCC
Q 001704 302 LLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSIRCPQ 381 (1024)
Q Consensus 302 ~~~~~~l~~l~~L~~L~L~~~~i~~~~~~~l~~~~~L~~L~L~~~~l~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~ 381 (1024)
T Consensus 152 -------------------------------------------------------------------------------- 151 (483)
T KOG4341|consen 152 -------------------------------------------------------------------------------- 151 (483)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CceecccCccHHHHHhcCCCccEEEEeCCCCCChHHHHHHHhcCCCCCEEEecCCCcCChHHHHHHHHhCCcccEEeccC
Q 001704 382 LEHLSLKRSNMAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSY 461 (1024)
Q Consensus 382 L~~L~L~~~~l~~~~~~~~~L~~L~L~~~~~i~~~~l~~~~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~ 461 (1024)
.+..+..+..+||++++|.+.+|.++++..+..+...|++|++|++..|..+++..++.++..|++|++|++++
T Consensus 152 ------~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSw 225 (483)
T KOG4341|consen 152 ------GDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSW 225 (483)
T ss_pred ------CcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhcc
Confidence 11223345677888888888899899999999999999999999999999899999999999999999999998
Q ss_pred CCCCCccccCCCCccEEEecCCCCCChhHHHhhhc-CCCccEEEecCCCCCccccccCCcCceEeecccccccccccccc
Q 001704 462 CPNISLESVRLPMLTVLQLHSCEGITSASMAAISH-SYMLEVLELDNCNLLTSVSLELPRLQNIRLVHCRKFADLNLRAM 540 (1024)
Q Consensus 462 ~~~l~~~~~~~~~L~~L~L~~~~~l~~~~~~~l~~-~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~l~~~ 540 (1024)
|+.+.. .++..+.. +..++.+.+.+|...
T Consensus 226 c~qi~~---------------------~gv~~~~rG~~~l~~~~~kGC~e~----------------------------- 255 (483)
T KOG4341|consen 226 CPQISG---------------------NGVQALQRGCKELEKLSLKGCLEL----------------------------- 255 (483)
T ss_pred Cchhhc---------------------CcchHHhccchhhhhhhhcccccc-----------------------------
Confidence 864432 22222221 222222222222110
Q ss_pred cccccccccccccceecccccccccccccchhhHHHHHHhcCcccEEeccCCcCchhhhhhhhcCCCCCCCccEEeccCC
Q 001704 541 MLSSIMVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNC 620 (1024)
Q Consensus 541 ~l~~l~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~L~~L~Ls~c~~l~~~~~~~l~~~~~~~~L~~L~l~~c 620 (1024)
.+..+...+..|+.+.++++.+|+.++|.....++ .+|..|+.|..++|
T Consensus 256 -----------------------------~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~--~~c~~lq~l~~s~~ 304 (483)
T KOG4341|consen 256 -----------------------------ELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIA--CGCHALQVLCYSSC 304 (483)
T ss_pred -----------------------------cHHHHHHHhccChHhhccchhhhccccchHHHHHh--hhhhHhhhhcccCC
Confidence 01122222333444445555555555554433332 44455555555555
Q ss_pred CCCceeccccCccceeecccCcccccccccCCCccEEEcCCCCCcccccccccccceeeccCCCCccccccccccceEEe
Q 001704 621 EGLTVVRFCSTSLVSLSLVGCRAITALELKCPILEKVCLDGCDHIESASFVPVALQSLNLGICPKLSTLGIEALHMVVLE 700 (1024)
Q Consensus 621 ~~l~~l~~~~~~l~~l~l~~~~~l~~l~~~~~~L~~L~l~~c~~l~~~~~~p~~L~~L~l~~~~~L~~L~l~~n~l~~l~ 700 (1024)
..+++. .+..+...+++|+.+.+.+|..+++.++.+.
T Consensus 305 t~~~d~----------------~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l--------------------------- 341 (483)
T KOG4341|consen 305 TDITDE----------------VLWALGQHCHNLQVLELSGCQQFSDRGFTML--------------------------- 341 (483)
T ss_pred CCCchH----------------HHHHHhcCCCceEEEeccccchhhhhhhhhh---------------------------
Confidence 544432 2333444455555555555555555444321
Q ss_pred eecccccCccccCCCcccEEecccCCCCchhhHhhhhhcCCCccEEEeccCCCCCchhhhhhccCCCCCEEecCCCccCC
Q 001704 701 LKGCGVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTN 780 (1024)
Q Consensus 701 l~~~~~l~~~~~~~~~L~~L~L~~~~~l~d~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~ 780 (1024)
-.+++.|+.+++..|..++|..+.....+|+.|++|.+++|..++++|...+..
T Consensus 342 ----------~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~---------------- 395 (483)
T KOG4341|consen 342 ----------GRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSS---------------- 395 (483)
T ss_pred ----------hcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhh----------------
Confidence 135678888888888888888888888899999999999999888876544432
Q ss_pred chhhhhcCCCCcEEEecCCCCcchhhhHhhhhcCCCCCCcEEeCCCC-ccchHHHHHHHhhCCcccEEEecC
Q 001704 781 LEPVFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYG-TLCQSAIEELLAYCTHLTHVSLNG 851 (1024)
Q Consensus 781 l~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~l~~L~~L~l~~n-~l~~~~~~~~l~~~~~L~~L~l~~ 851 (1024)
.-.+...|+.+.+.+|+.+++..++.+ ..+++|+.+++..| .++...+..+-.++|+++...+..
T Consensus 396 ---~~c~~~~l~~lEL~n~p~i~d~~Le~l---~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a~~a 461 (483)
T KOG4341|consen 396 ---SSCSLEGLEVLELDNCPLITDATLEHL---SICRNLERIELIDCQDVTKEAISRFATHLPNIKVHAYFA 461 (483)
T ss_pred ---ccccccccceeeecCCCCchHHHHHHH---hhCcccceeeeechhhhhhhhhHHHHhhCccceehhhcc
Confidence 123567788999999998888888877 78899999999987 456667777778888887765543
No 4
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=6.4e-24 Score=211.53 Aligned_cols=268 Identities=20% Similarity=0.350 Sum_probs=193.9
Q ss_pred hccCcHHHHHHHHhcCCHHHHHHHHHHhHHHHHhhcCCCcccccccCCCCCCHHHHHHHHhhCCCceEEEEcCCCchhHH
Q 001704 224 RMDLTDDLLHMVFSFLDYVDLCRAAIVCRQWRAASAHEDFWRCLNFENRKISVEQFEDVCQRYPNATEVNIYGAPAIHLL 303 (1024)
Q Consensus 224 ~~~LP~ell~~If~~L~~~dl~~~~~Vcr~W~~~~~~~~l~~~l~l~~~~~~~~~l~~l~~~~~~l~~L~L~~~~~~~~~ 303 (1024)
|..||||++..||+.|+.+++.+++.||||||+++.+.++|..+|+..+.+.+..+.++.++ +|..+++.. ..+.+.
T Consensus 98 ~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW~~lDl~~r~i~p~~l~~l~~r--gV~v~Rlar-~~~~~p 174 (419)
T KOG2120|consen 98 WDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLWQTLDLTGRNIHPDVLGRLLSR--GVIVFRLAR-SFMDQP 174 (419)
T ss_pred cccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccceeeeccCCCccChhHHHHHHhC--CeEEEEcch-hhhcCc
Confidence 67899999999999999999999999999999999999999999999999999999998876 455555543 222222
Q ss_pred -HHHHHhcC-CCCCEEEccCcccchH-HHHhhcCCCCCCEEEecCCCCCCCcccccccCCcccEEEecccccchhcccCC
Q 001704 304 -VMKAVSLL-RNLEALTLGRGQLGDA-FFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSIRCP 380 (1024)
Q Consensus 304 -~~~~l~~l-~~L~~L~L~~~~i~~~-~~~~l~~~~~L~~L~L~~~~l~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~ 380 (1024)
+.+.+..+ ..|++|+|+...|+.. +...++.|.+|+.|.|.++.+++.+...+....+|+.|+|+.|.-
T Consensus 175 rlae~~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG-------- 246 (419)
T KOG2120|consen 175 RLAEHFSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSG-------- 246 (419)
T ss_pred hhhhhhhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccc--------
Confidence 23333333 4699999999888854 667788999999999999999888777777778888888877652
Q ss_pred CCceecccCccHHHHHhcCCCccEEEEeCCCCCChHHHHHHH-hcCCCCCEEEecCCC-cCChHHHHHHHHhCCcccEEe
Q 001704 381 QLEHLSLKRSNMAQAVLNCPLLHLLDIASCHKLSDAAIRLAA-TSCPQLESLDMSNCS-CVSDESLREIALSCANLRILN 458 (1024)
Q Consensus 381 ~L~~L~L~~~~l~~~~~~~~~L~~L~L~~~~~i~~~~l~~~~-~~~~~L~~L~L~~~~-~l~~~~l~~l~~~~~~L~~L~ 458 (1024)
++.|.+.-++.+|+.|..|+|++|...++. +..+. .--++|+.|+|+++. .+.+..+..+...||+|.+|+
T Consensus 247 ------~t~n~~~ll~~scs~L~~LNlsWc~l~~~~-Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LD 319 (419)
T KOG2120|consen 247 ------FTENALQLLLSSCSRLDELNLSWCFLFTEK-VTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLD 319 (419)
T ss_pred ------cchhHHHHHHHhhhhHhhcCchHhhccchh-hhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeec
Confidence 223444556777777777777777533333 33322 233677777777764 345556666777777777777
Q ss_pred ccCCCCCCc----cccCCCCccEEEecCCCCCChhHHHhhhcCCCccEEEecCCC
Q 001704 459 SSYCPNISL----ESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCN 509 (1024)
Q Consensus 459 L~~~~~l~~----~~~~~~~L~~L~L~~~~~l~~~~~~~l~~~~~L~~L~l~~~~ 509 (1024)
|+.|-.+.. ++.+++.|++|.++.|..+....+..+...+.|.+|++.+|-
T Consensus 320 LSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 320 LSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred cccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEecccc
Confidence 777765443 234677777777777766666666666666677777666653
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.89 E-value=3.9e-24 Score=230.62 Aligned_cols=359 Identities=19% Similarity=0.197 Sum_probs=182.7
Q ss_pred CEEEecCCCcCChHHHHHHHHhCCcccEEeccCCC--CCCccccCCCCccEEEecCCCCCChhHHHhhhcCCCccEEEec
Q 001704 429 ESLDMSNCSCVSDESLREIALSCANLRILNSSYCP--NISLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELD 506 (1024)
Q Consensus 429 ~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~--~l~~~~~~~~~L~~L~L~~~~~l~~~~~~~l~~~~~L~~L~l~ 506 (1024)
+.|++++|. +.+..+..+- ++|+|+++++.+|. .+|.......+|++|+|..+ .|....-..++.++.|+.|||+
T Consensus 81 ~~LdlsnNk-l~~id~~~f~-nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N-~I~sv~se~L~~l~alrslDLS 157 (873)
T KOG4194|consen 81 QTLDLSNNK-LSHIDFEFFY-NLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHN-LISSVTSEELSALPALRSLDLS 157 (873)
T ss_pred eeeeccccc-cccCcHHHHh-cCCcceeeeeccchhhhcccccccccceeEEeeecc-ccccccHHHHHhHhhhhhhhhh
Confidence 345555554 4444443333 55555555555554 44444445555666666664 4555555556666667777777
Q ss_pred CCCCCccccccCCcCceEeeccccccccccccccccccc---ccccccccceecccccccccccccchhhHHHHHHhcCc
Q 001704 507 NCNLLTSVSLELPRLQNIRLVHCRKFADLNLRAMMLSSI---MVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQC 583 (1024)
Q Consensus 507 ~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~l~~~~l~~l---~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~ 583 (1024)
.|.+.+---..||. -.+++.+++.+|.+..+ .+..+.+|..|.++.|+++.+....++ .+++
T Consensus 158 rN~is~i~~~sfp~--------~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk-------~L~~ 222 (873)
T KOG4194|consen 158 RNLISEIPKPSFPA--------KVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFK-------RLPK 222 (873)
T ss_pred hchhhcccCCCCCC--------CCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhh-------hcch
Confidence 66532221112221 11233334444444444 345555666666666666665433332 2356
Q ss_pred ccEEeccCCcCchhhhhhhhcCCCCCCCccEEeccCCCCCceeccccCccceeecccCcccccccccCCCccEEEcCCCC
Q 001704 584 LQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVVRFCSTSLVSLSLVGCRAITALELKCPILEKVCLDGCD 663 (1024)
Q Consensus 584 L~~L~Ls~c~~l~~~~~~~l~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~l~l~~~~~l~~l~~~~~~L~~L~l~~c~ 663 (1024)
|+.|+|.. +.+.-.-.-.| .++++|+.|.+..+. |..+ +.=-+.+|.++..+.+..++++.++=.
T Consensus 223 L~~LdLnr-N~irive~ltF---qgL~Sl~nlklqrN~-I~kL-------~DG~Fy~l~kme~l~L~~N~l~~vn~g--- 287 (873)
T KOG4194|consen 223 LESLDLNR-NRIRIVEGLTF---QGLPSLQNLKLQRND-ISKL-------DDGAFYGLEKMEHLNLETNRLQAVNEG--- 287 (873)
T ss_pred hhhhhccc-cceeeehhhhh---cCchhhhhhhhhhcC-cccc-------cCcceeeecccceeecccchhhhhhcc---
Confidence 66666666 45543322233 566666666666543 2211 101112222222222222222221111
Q ss_pred CcccccccccccceeeccCCCCccccccccccceEEeeecccccCccccCCCcccEEecccCCCCchhhHhhhhhcCCCc
Q 001704 664 HIESASFVPVALQSLNLGICPKLSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLI 743 (1024)
Q Consensus 664 ~l~~~~~~p~~L~~L~l~~~~~L~~L~l~~n~l~~l~l~~~~~l~~~~~~~~~L~~L~L~~~~~l~d~~l~~~~~~~~~L 743 (1024)
.+-++.+|+.|+++.|.++.+. ++.+..+++|+.|+|++| +++. --+..+..+..|
T Consensus 288 ---------------~lfgLt~L~~L~lS~NaI~rih-------~d~WsftqkL~~LdLs~N-~i~~-l~~~sf~~L~~L 343 (873)
T KOG4194|consen 288 ---------------WLFGLTSLEQLDLSYNAIQRIH-------IDSWSFTQKLKELDLSSN-RITR-LDEGSFRVLSQL 343 (873)
T ss_pred ---------------cccccchhhhhccchhhhheee-------cchhhhcccceeEecccc-cccc-CChhHHHHHHHh
Confidence 1455566666666666664332 244555666666666665 4542 122233445566
Q ss_pred cEEEeccCCCCCchhhhhhccCCCCCEEecCCCccCCc----hhhhhcCCCCcEEEecCCCCcchhhhHhhhhcCCCCCC
Q 001704 744 ESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNL----EPVFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPAL 819 (1024)
Q Consensus 744 ~~L~L~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~l----~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~l~~L 819 (1024)
++|+|++|. +.......|..+.+|++|||++|.++.. ...|.++++|+.|++.+|+ |+.+...++ ..+++|
T Consensus 344 e~LnLs~Ns-i~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNq-lk~I~krAf---sgl~~L 418 (873)
T KOG4194|consen 344 EELNLSHNS-IDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQ-LKSIPKRAF---SGLEAL 418 (873)
T ss_pred hhhcccccc-hHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCce-eeecchhhh---ccCccc
Confidence 666666665 3333334555666666666666666632 1245666666666666665 665555555 566666
Q ss_pred cEEeCCCCccchHHHHHHHhhCCcccEEEecC
Q 001704 820 QELDLSYGTLCQSAIEELLAYCTHLTHVSLNG 851 (1024)
Q Consensus 820 ~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l~~ 851 (1024)
++||+.+|.|-. .-+..|..+ +|++|.++.
T Consensus 419 E~LdL~~NaiaS-Iq~nAFe~m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 419 EHLDLGDNAIAS-IQPNAFEPM-ELKELVMNS 448 (873)
T ss_pred ceecCCCCccee-ecccccccc-hhhhhhhcc
Confidence 666666666532 334445544 566665543
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.88 E-value=1.1e-23 Score=227.32 Aligned_cols=356 Identities=18% Similarity=0.199 Sum_probs=239.5
Q ss_pred CceecccCccHH----HHHhcCCCccEEEEeCCCCCChHHHHHHHhcCCCCCEEEecCCCcCChHHHHHHHHhCCcccEE
Q 001704 382 LEHLSLKRSNMA----QAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRIL 457 (1024)
Q Consensus 382 L~~L~L~~~~l~----~~~~~~~~L~~L~L~~~~~i~~~~l~~~~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L 457 (1024)
-+.|++++|.+. ..+.++++|+++++..|. ++ .++.+.....+|+.|+|.+|. |+...-+++. .+|.|+.|
T Consensus 80 t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~-Lt--~IP~f~~~sghl~~L~L~~N~-I~sv~se~L~-~l~alrsl 154 (873)
T KOG4194|consen 80 TQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNE-LT--RIPRFGHESGHLEKLDLRHNL-ISSVTSEELS-ALPALRSL 154 (873)
T ss_pred eeeeeccccccccCcHHHHhcCCcceeeeeccch-hh--hcccccccccceeEEeeeccc-cccccHHHHH-hHhhhhhh
Confidence 344666666554 567889999999998873 44 567776777789999999987 6555555554 67889999
Q ss_pred eccCCC--CCCc-cccCCCCccEEEecCCCCCChhHHHhhhcCCCccEEEecCCCCCccccccCCcCceEeecccccccc
Q 001704 458 NSSYCP--NISL-ESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLELPRLQNIRLVHCRKFAD 534 (1024)
Q Consensus 458 ~L~~~~--~l~~-~~~~~~~L~~L~L~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~c~~L~~ 534 (1024)
+|+.|. .++. .+.+-++|++|+|+++ .|+......+..+.+|..|.|+.|.+.+--+..|. ..++|+.
T Consensus 155 DLSrN~is~i~~~sfp~~~ni~~L~La~N-~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk--------~L~~L~~ 225 (873)
T KOG4194|consen 155 DLSRNLISEIPKPSFPAKVNIKKLNLASN-RITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFK--------RLPKLES 225 (873)
T ss_pred hhhhchhhcccCCCCCCCCCceEEeeccc-cccccccccccccchheeeecccCcccccCHHHhh--------hcchhhh
Confidence 999885 3332 2334578999999996 78888888888888999999988875433222222 2223333
Q ss_pred ccccccccccc---ccccccccceecccccccccccccchhhHHHHHHhcCcccEEeccCCcCchhhhhhhhcCCCCCCC
Q 001704 535 LNLRAMMLSSI---MVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPM 611 (1024)
Q Consensus 535 l~l~~~~l~~l---~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~L~~L~Ls~c~~l~~~~~~~l~~~~~~~~ 611 (1024)
+++..|.+.-+ .+.++++|+.|.+..|.+..+....+. .|.++++|+|.. +++...-..++ -++.+
T Consensus 226 LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy-------~l~kme~l~L~~-N~l~~vn~g~l---fgLt~ 294 (873)
T KOG4194|consen 226 LDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFY-------GLEKMEHLNLET-NRLQAVNEGWL---FGLTS 294 (873)
T ss_pred hhccccceeeehhhhhcCchhhhhhhhhhcCcccccCccee-------eecccceeeccc-chhhhhhcccc---cccch
Confidence 44444433322 455555555555555555544322222 234555555555 34443322232 34444
Q ss_pred ccEEeccCCCCCceeccccCccceeecccCcccccccccCCCccEEEcCCCCCcccccccccccceeeccCCCCcccccc
Q 001704 612 LKSLVLDNCEGLTVVRFCSTSLVSLSLVGCRAITALELKCPILEKVCLDGCDHIESASFVPVALQSLNLGICPKLSTLGI 691 (1024)
Q Consensus 612 L~~L~l~~c~~l~~l~~~~~~l~~l~l~~~~~l~~l~~~~~~L~~L~l~~c~~l~~~~~~p~~L~~L~l~~~~~L~~L~l 691 (1024)
|+.|+++++ .++.++++. .+.|++|+.|++
T Consensus 295 L~~L~lS~N--------------------------------aI~rih~d~------------------WsftqkL~~LdL 324 (873)
T KOG4194|consen 295 LEQLDLSYN--------------------------------AIQRIHIDS------------------WSFTQKLKELDL 324 (873)
T ss_pred hhhhccchh--------------------------------hhheeecch------------------hhhcccceeEec
Confidence 555554443 333333333 678899999999
Q ss_pred ccccceEEeeecccccCccccCCCcccEEecccCCCCchhhHhhhhhcCCCccEEEeccCCCCC--chhhhhhccCCCCC
Q 001704 692 EALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIG--PDGLYSLRSLQNLT 769 (1024)
Q Consensus 692 ~~n~l~~l~l~~~~~l~~~~~~~~~L~~L~L~~~~~l~d~~l~~~~~~~~~L~~L~L~~~~~~~--~~~~~~l~~l~~L~ 769 (1024)
+.|+++ .--+..+..+..|++|.|+.| .++ ..-...+..+.+|++|+|++|.... +++...+..+++|+
T Consensus 325 s~N~i~-------~l~~~sf~~L~~Le~LnLs~N-si~-~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~Lr 395 (873)
T KOG4194|consen 325 SSNRIT-------RLDEGSFRVLSQLEELNLSHN-SID-HLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLR 395 (873)
T ss_pred cccccc-------cCChhHHHHHHHhhhhccccc-chH-HHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhh
Confidence 999984 222345777899999999998 454 2334456788899999999987433 33557788899999
Q ss_pred EEecCCCccCCchh-hhhcCCCCcEEEecCCCCcchhhhHhhhhcCCCCCCcEEeCCC
Q 001704 770 MLDLSYTFLTNLEP-VFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSY 826 (1024)
Q Consensus 770 ~L~Ls~n~l~~l~~-~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~l~~L~~L~l~~ 826 (1024)
.|++.+|++..++. .|.++..|++|+|.+|. |..+.+.+| ..+ .|++|.+..
T Consensus 396 kL~l~gNqlk~I~krAfsgl~~LE~LdL~~Na-iaSIq~nAF---e~m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 396 KLRLTGNQLKSIPKRAFSGLEALEHLDLGDNA-IASIQPNAF---EPM-ELKELVMNS 448 (873)
T ss_pred heeecCceeeecchhhhccCcccceecCCCCc-ceeeccccc---ccc-hhhhhhhcc
Confidence 99999999999987 89999999999999988 888888877 555 788887764
No 7
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.83 E-value=2.1e-22 Score=229.33 Aligned_cols=122 Identities=19% Similarity=0.195 Sum_probs=62.2
Q ss_pred CCEEEccCcccchHHHHhhcCCCCCCEEEecCCCCCCCcccccccCCcccEEEecccccchhcccCCCCceecccCccHH
Q 001704 314 LEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSIRCPQLEHLSLKRSNMA 393 (1024)
Q Consensus 314 L~~L~L~~~~i~~~~~~~l~~~~~L~~L~L~~~~l~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~L~~L~L~~~~l~ 393 (1024)
++.|+++.|.+-....+.+.++-+|++|++++|.++. .|.-+..+. +|+.|.++.|.+.
T Consensus 23 ~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~~-fp~~it~l~--------------------~L~~ln~s~n~i~ 81 (1081)
T KOG0618|consen 23 LQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQISS-FPIQITLLS--------------------HLRQLNLSRNYIR 81 (1081)
T ss_pred HHhhhccccccccCchHHhhheeeeEEeecccccccc-CCchhhhHH--------------------HHhhcccchhhHh
Confidence 5556666664443334444445456666666665432 222233333 4444444444433
Q ss_pred ---HHHhcCCCccEEEEeCCCCCChHHHHHHHhcCCCCCEEEecCCCcCChHHHHHHHHhCCcccEEeccCC
Q 001704 394 ---QAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYC 462 (1024)
Q Consensus 394 ---~~~~~~~~L~~L~L~~~~~i~~~~l~~~~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~ 462 (1024)
....++.+|++|.|..+. .. .++..+..+++|++|+++.|. ... .......+..++.+..++|
T Consensus 82 ~vp~s~~~~~~l~~lnL~~n~-l~--~lP~~~~~lknl~~LdlS~N~-f~~--~Pl~i~~lt~~~~~~~s~N 147 (1081)
T KOG0618|consen 82 SVPSSCSNMRNLQYLNLKNNR-LQ--SLPASISELKNLQYLDLSFNH-FGP--IPLVIEVLTAEEELAASNN 147 (1081)
T ss_pred hCchhhhhhhcchhheeccch-hh--cCchhHHhhhcccccccchhc-cCC--CchhHHhhhHHHHHhhhcc
Confidence 234556667777776653 22 345555666777777777776 221 1122224555555555555
No 8
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.82 E-value=1e-22 Score=231.85 Aligned_cols=133 Identities=26% Similarity=0.308 Sum_probs=107.3
Q ss_pred CCCcccEEecccCCCCchhhHhhhhhcCCCccEEEeccCCCCCchhhhhhccCCCCCEEecCCCccCCchhhhhcCCCCc
Q 001704 713 NCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLEPVFESCLQLK 792 (1024)
Q Consensus 713 ~~~~L~~L~L~~~~~l~d~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~l~~~~~~~~~L~ 792 (1024)
..+.|+.|.+.+| .++|.++|.+ .+.+.|+.|+|++|..- ......+.++..|++|+||+|++..+|..+..|++|+
T Consensus 357 ~~~~Lq~LylanN-~Ltd~c~p~l-~~~~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~ 433 (1081)
T KOG0618|consen 357 NHAALQELYLANN-HLTDSCFPVL-VNFKHLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLH 433 (1081)
T ss_pred hhHHHHHHHHhcC-cccccchhhh-ccccceeeeeecccccc-cCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhH
Confidence 3577899999988 7888777765 67889999999998633 2234778899999999999999999999999999999
Q ss_pred EEEecCCCCcchhhhHhhhhcCCCCCCcEEeCCCCccchHHHHHHHhhCCcccEEEecCCCCc
Q 001704 793 VLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELLAYCTHLTHVSLNGCGNM 855 (1024)
Q Consensus 793 ~L~l~~c~~l~~~~~~~l~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l~~c~~l 855 (1024)
+|...+|. |...+ .+ ..++.|+.+|++.|.++...++..... ++|+.||++||..+
T Consensus 434 tL~ahsN~-l~~fP--e~---~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~~l 489 (1081)
T KOG0618|consen 434 TLRAHSNQ-LLSFP--EL---AQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNTRL 489 (1081)
T ss_pred HHhhcCCc-eeech--hh---hhcCcceEEecccchhhhhhhhhhCCC-cccceeeccCCccc
Confidence 99999987 54332 44 678999999999999987666654433 89999999999863
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.82 E-value=9.2e-24 Score=218.45 Aligned_cols=457 Identities=19% Similarity=0.204 Sum_probs=268.4
Q ss_pred hhCCCceEEEEcCCCchhHHHHHHHhcCCCCCEEEccCcccchHHHHhhcCCCCCCEEEecCCCCCCCcccccccCCccc
Q 001704 284 QRYPNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLR 363 (1024)
Q Consensus 284 ~~~~~l~~L~L~~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~~~~~~l~~~~~L~~L~L~~~~l~~~l~~~~~~~~~L~ 363 (1024)
++...++.+++.+ +.. ...+.+++.+..++.|+.+.|.+.. +|+.+.....|++|++++|.+.. ++.-+..+-.|+
T Consensus 65 ~nL~~l~vl~~~~-n~l-~~lp~aig~l~~l~~l~vs~n~ls~-lp~~i~s~~~l~~l~~s~n~~~e-l~~~i~~~~~l~ 140 (565)
T KOG0472|consen 65 KNLACLTVLNVHD-NKL-SQLPAAIGELEALKSLNVSHNKLSE-LPEQIGSLISLVKLDCSSNELKE-LPDSIGRLLDLE 140 (565)
T ss_pred hcccceeEEEecc-chh-hhCCHHHHHHHHHHHhhcccchHhh-ccHHHhhhhhhhhhhccccceee-cCchHHHHhhhh
Confidence 4566778888887 333 3467788888888888888887766 77888888889999998887753 445566777788
Q ss_pred EEEecccccchhcc---cCCCCceecccCccHH---HHHhcCCCccEEEEeCCCCCChHHHHHHHhcCCCCCEEEecCCC
Q 001704 364 RLEITKCRVMRVSI---RCPQLEHLSLKRSNMA---QAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCS 437 (1024)
Q Consensus 364 ~L~L~~~~~~~~~~---~~~~L~~L~L~~~~l~---~~~~~~~~L~~L~L~~~~~i~~~~l~~~~~~~~~L~~L~L~~~~ 437 (1024)
.|+..+|.+.+++. .+.+|..|++.+|.+. +...+++.|++|+...|. + +.++..++.+.+|..|++..|.
T Consensus 141 dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~-L--~tlP~~lg~l~~L~~LyL~~Nk 217 (565)
T KOG0472|consen 141 DLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNL-L--ETLPPELGGLESLELLYLRRNK 217 (565)
T ss_pred hhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhh-h--hcCChhhcchhhhHHHHhhhcc
Confidence 88888888776664 4556667777777665 222336677777766542 2 2455666666677777777665
Q ss_pred cCChHHHHHHHHhCCcccEEeccCCC--CCCcccc-CCCCccEEEecCCCCCChhHHHhhhcCCCccEEEecCCCCCccc
Q 001704 438 CVSDESLREIALSCANLRILNSSYCP--NISLESV-RLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSV 514 (1024)
Q Consensus 438 ~l~~~~l~~l~~~~~~L~~L~L~~~~--~l~~~~~-~~~~L~~L~L~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 514 (1024)
+. .++.|. .|..|++|+++.|. .++.+.. ++++|..|++..+ .+. +.+..+..+.+|+.||+++|. ++.+
T Consensus 218 -i~--~lPef~-gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdN-klk-e~Pde~clLrsL~rLDlSNN~-is~L 290 (565)
T KOG0472|consen 218 -IR--FLPEFP-GCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDN-KLK-EVPDEICLLRSLERLDLSNND-ISSL 290 (565)
T ss_pred -cc--cCCCCC-ccHHHHHHHhcccHHHhhHHHHhcccccceeeecccc-ccc-cCchHHHHhhhhhhhcccCCc-cccC
Confidence 32 233333 56666666666654 3444433 5566666666654 222 233444445556666666554 2333
Q ss_pred cccCCcCceEeecccccccccccccccccccccccccccceecccccccccccc-----cchhhHHHHHHhcCcccEEec
Q 001704 515 SLELPRLQNIRLVHCRKFADLNLRAMMLSSIMVSNCAALHRINITSNSLQKLSL-----QKQENLTSLALQCQCLQEVDL 589 (1024)
Q Consensus 515 ~~~~~~L~~L~l~~c~~L~~l~l~~~~l~~l~l~~~~~L~~L~l~~n~l~~~~~-----~~~~~l~~l~~~~~~L~~L~L 589 (1024)
|.. ++++ .|+.|.+.+|-+..+.- ...+-++.+.. ..+.=-+
T Consensus 291 p~s-----------------------------Lgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs---~~~~dgl 337 (565)
T KOG0472|consen 291 PYS-----------------------------LGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRS---KIKDDGL 337 (565)
T ss_pred Ccc-----------------------------cccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHH---hhccCCC
Confidence 333 4444 45555555555443311 11111222211 0000001
Q ss_pred cCC--cCchh-h-hhhhhcCCCCCCCccEEeccCCCCCceeccccCccceeecccCcccccccccCCCccEEEcCCCCCc
Q 001704 590 TDC--ESLTN-S-VCEVFSDGGGCPMLKSLVLDNCEGLTVVRFCSTSLVSLSLVGCRAITALELKCPILEKVCLDGCDHI 665 (1024)
Q Consensus 590 s~c--~~l~~-~-~~~~l~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~l~l~~~~~l~~l~~~~~~L~~L~l~~c~~l 665 (1024)
+.- ...+. . ....+.......+.+.|++++- +++.+|-
T Consensus 338 S~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~-qlt~VPd------------------------------------- 379 (565)
T KOG0472|consen 338 SQSEGGTETAMTLPSESFPDIYAIITTKILDVSDK-QLTLVPD------------------------------------- 379 (565)
T ss_pred CCCcccccccCCCCCCcccchhhhhhhhhhccccc-ccccCCH-------------------------------------
Confidence 110 00000 0 0001111122233444444432 1332211
Q ss_pred ccccccccccceeeccCCCCccccccccccceEEeeecccccCccccCCCcccE-EecccCCCCchhhHhhhhhcCCCcc
Q 001704 666 ESASFVPVALQSLNLGICPKLSTLGIEALHMVVLELKGCGVLSDAYINCPLLTS-LDASFCSQLKDDCLSATTTSCPLIE 744 (1024)
Q Consensus 666 ~~~~~~p~~L~~L~l~~~~~L~~L~l~~n~l~~l~l~~~~~l~~~~~~~~~L~~-L~L~~~~~l~d~~l~~~~~~~~~L~ 744 (1024)
.. +....-.-.+.++++.|++ ..+|..+..+..+.+ +.+++| .+ ..++..++.+++|.
T Consensus 380 --------EV--fea~~~~~Vt~VnfskNqL--------~elPk~L~~lkelvT~l~lsnn-~i--sfv~~~l~~l~kLt 438 (565)
T KOG0472|consen 380 --------EV--FEAAKSEIVTSVNFSKNQL--------CELPKRLVELKELVTDLVLSNN-KI--SFVPLELSQLQKLT 438 (565)
T ss_pred --------HH--HHHhhhcceEEEecccchH--------hhhhhhhHHHHHHHHHHHhhcC-cc--ccchHHHHhhhcce
Confidence 00 0001111123344444444 344544444444433 344443 33 24556667777777
Q ss_pred EEEeccCCCCCchhhhhhccCCCCCEEecCCCccCCchhhhhcCCCCcEEEecCCCCcchhhhHhhhhcCCCCCCcEEeC
Q 001704 745 SLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLEPVFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDL 824 (1024)
Q Consensus 745 ~L~L~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~l~~L~~L~l 824 (1024)
.|++++|..-. .+..++.+..|+.|+||.|+|..+|.++.....|+.+-.++|+ +..+.+..+ .++.+|..||+
T Consensus 439 ~L~L~NN~Ln~--LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nq-i~~vd~~~l---~nm~nL~tLDL 512 (565)
T KOG0472|consen 439 FLDLSNNLLND--LPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQ-IGSVDPSGL---KNMRNLTTLDL 512 (565)
T ss_pred eeecccchhhh--cchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhcccc-ccccChHHh---hhhhhcceecc
Confidence 77877775322 3577778888999999999999999988888888888878776 888777766 78999999999
Q ss_pred CCCccchHHHHHHHhhCCcccEEEecCCCC
Q 001704 825 SYGTLCQSAIEELLAYCTHLTHVSLNGCGN 854 (1024)
Q Consensus 825 ~~n~l~~~~~~~~l~~~~~L~~L~l~~c~~ 854 (1024)
.+|.+. .+|..++++++|++|++.||+.
T Consensus 513 ~nNdlq--~IPp~LgnmtnL~hLeL~gNpf 540 (565)
T KOG0472|consen 513 QNNDLQ--QIPPILGNMTNLRHLELDGNPF 540 (565)
T ss_pred CCCchh--hCChhhccccceeEEEecCCcc
Confidence 999985 6788899999999999999985
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.79 E-value=3.2e-21 Score=209.06 Aligned_cols=357 Identities=20% Similarity=0.212 Sum_probs=186.6
Q ss_pred CCCCceecccCccHH-----HHHhcCCCccEEEEeCCCCCChHHHHHHHhcCCCCCEEEecCCCcCChHHHHHHHHhCCc
Q 001704 379 CPQLEHLSLKRSNMA-----QAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCAN 453 (1024)
Q Consensus 379 ~~~L~~L~L~~~~l~-----~~~~~~~~L~~L~L~~~~~i~~~~l~~~~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~ 453 (1024)
+|-.+-.++++|++. .-+..+.+++.|.|... ++ ..++..++.|.+|++|.++.|..++ ....+. .+|.
T Consensus 6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt-~L--~~vPeEL~~lqkLEHLs~~HN~L~~--vhGELs-~Lp~ 79 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRT-KL--EQVPEELSRLQKLEHLSMAHNQLIS--VHGELS-DLPR 79 (1255)
T ss_pred cceeecccccCCcCCCCcCchhHHHhhheeEEEechh-hh--hhChHHHHHHhhhhhhhhhhhhhHh--hhhhhc-cchh
Confidence 344445555555544 44556666666666552 22 2455555666666666666665211 111221 4455
Q ss_pred ccEEeccCCC----CCCccccCCCCccEEEecCCCCCChhHHHhhhcCCCccEEEecCCCCCccccccCCcCceEeeccc
Q 001704 454 LRILNSSYCP----NISLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLELPRLQNIRLVHC 529 (1024)
Q Consensus 454 L~~L~L~~~~----~l~~~~~~~~~L~~L~L~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~c 529 (1024)
|+.+.+..|. .+|..+.++..|..|+|+.+ .+ .+.+..+..-.++-+|+
T Consensus 80 LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShN-qL-~EvP~~LE~AKn~iVLN------------------------- 132 (1255)
T KOG0444|consen 80 LRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHN-QL-REVPTNLEYAKNSIVLN------------------------- 132 (1255)
T ss_pred hHHHhhhccccccCCCCchhcccccceeeecchh-hh-hhcchhhhhhcCcEEEE-------------------------
Confidence 5555554443 33444444444444444443 11 12223333333333333
Q ss_pred cccccccccccccccc---ccccccccceecccccccccccccchhhHHHHHHhcCcccEEeccCCcCchhhhhhhhcCC
Q 001704 530 RKFADLNLRAMMLSSI---MVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDG 606 (1024)
Q Consensus 530 ~~L~~l~l~~~~l~~l---~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~L~~L~Ls~c~~l~~~~~~~l~~~ 606 (1024)
+++|++..| .+.++..|-.|++++|++..+.++ +. .+..|+.|+|+++ .+......-+
T Consensus 133 -------LS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ----~R----RL~~LqtL~Ls~N-PL~hfQLrQL--- 193 (1255)
T KOG0444|consen 133 -------LSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQ----IR----RLSMLQTLKLSNN-PLNHFQLRQL--- 193 (1255)
T ss_pred -------cccCccccCCchHHHhhHhHhhhccccchhhhcCHH----HH----HHhhhhhhhcCCC-hhhHHHHhcC---
Confidence 344444433 344556666677777777665432 12 2346777777773 3332211111
Q ss_pred CCCCCccEEeccCCCCCceeccccCccceeecccCcccccccccCCCccEEEcCCCCCcccccccccccceeeccCCCCc
Q 001704 607 GGCPMLKSLVLDNCEGLTVVRFCSTSLVSLSLVGCRAITALELKCPILEKVCLDGCDHIESASFVPVALQSLNLGICPKL 686 (1024)
Q Consensus 607 ~~~~~L~~L~l~~c~~l~~l~~~~~~l~~l~l~~~~~l~~l~~~~~~L~~L~l~~c~~l~~~~~~p~~L~~L~l~~~~~L 686 (1024)
..+.+|+.|++++-.. -. .-+|.+ +.++.+|
T Consensus 194 PsmtsL~vLhms~TqR------------------------------------------Tl--~N~Pts-----ld~l~NL 224 (1255)
T KOG0444|consen 194 PSMTSLSVLHMSNTQR------------------------------------------TL--DNIPTS-----LDDLHNL 224 (1255)
T ss_pred ccchhhhhhhcccccc------------------------------------------hh--hcCCCc-----hhhhhhh
Confidence 2333344444433220 00 012333 4555666
Q ss_pred cccccccccceEEeeecccccCccccCCCcccEEecccCCCCchhhHhhhhhcCCCccEEEeccCCCCCchhhhhhccCC
Q 001704 687 STLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQ 766 (1024)
Q Consensus 687 ~~L~l~~n~l~~l~l~~~~~l~~~~~~~~~L~~L~L~~~~~l~d~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~l~ 766 (1024)
..++++.|.+ ..+|+.+.++++|+.|+|++| .++. +........+|++|+++.|+.... +..+.+++
T Consensus 225 ~dvDlS~N~L--------p~vPecly~l~~LrrLNLS~N-~ite--L~~~~~~W~~lEtLNlSrNQLt~L--P~avcKL~ 291 (1255)
T KOG0444|consen 225 RDVDLSENNL--------PIVPECLYKLRNLRRLNLSGN-KITE--LNMTEGEWENLETLNLSRNQLTVL--PDAVCKLT 291 (1255)
T ss_pred hhccccccCC--------CcchHHHhhhhhhheeccCcC-ceee--eeccHHHHhhhhhhccccchhccc--hHHHhhhH
Confidence 6666666665 556666666666667776666 4543 333334455666666666664432 45666666
Q ss_pred CCCEEecCCCccC--CchhhhhcCCCCcEEEecCCCCcchhhhHhhhhcCCCCCCcEEeCCCCccchHHHHHHHhhCCcc
Q 001704 767 NLTMLDLSYTFLT--NLEPVFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELLAYCTHL 844 (1024)
Q Consensus 767 ~L~~L~Ls~n~l~--~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~~~~L 844 (1024)
.|+.|.+.+|++. ++|+.++.+.+|+++..++|. +. ..++.+ ..|..|+.|.++.|.+. .+|+.+.-++-|
T Consensus 292 kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~-LE-lVPEgl---cRC~kL~kL~L~~NrLi--TLPeaIHlL~~l 364 (1255)
T KOG0444|consen 292 KLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNK-LE-LVPEGL---CRCVKLQKLKLDHNRLI--TLPEAIHLLPDL 364 (1255)
T ss_pred HHHHHHhccCcccccCCccchhhhhhhHHHHhhccc-cc-cCchhh---hhhHHHHHhccccccee--echhhhhhcCCc
Confidence 6666666666654 566666666666666666654 43 334444 55666666666666654 456666666677
Q ss_pred cEEEecCCCCcc
Q 001704 845 THVSLNGCGNMH 856 (1024)
Q Consensus 845 ~~L~l~~c~~l~ 856 (1024)
+.|++..|+++.
T Consensus 365 ~vLDlreNpnLV 376 (1255)
T KOG0444|consen 365 KVLDLRENPNLV 376 (1255)
T ss_pred ceeeccCCcCcc
Confidence 777777766654
No 11
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.77 E-value=4.6e-21 Score=207.91 Aligned_cols=364 Identities=21% Similarity=0.215 Sum_probs=216.2
Q ss_pred CCCCCEEEccCcccc-hHHHHhhcCCCCCCEEEecCCCCCCCcccccccCCcccEEEecccccchhcccCCCCceecccC
Q 001704 311 LRNLEALTLGRGQLG-DAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSIRCPQLEHLSLKR 389 (1024)
Q Consensus 311 l~~L~~L~L~~~~i~-~~~~~~l~~~~~L~~L~L~~~~l~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~L~~L~L~~ 389 (1024)
++-.+-.++++|.++ +.+|..+..+++++.|.|....+. .+|+.+..+.+|++|.+.+|++.++.
T Consensus 6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~~vh------------- 71 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLISVH------------- 71 (1255)
T ss_pred cceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhHhhh-------------
Confidence 344555667777776 446667777777777777665543 35555556666666666655554433
Q ss_pred ccHHHHHhcCCCccEEEEeCCCCCChHHHHHHHhcCCCCCEEEecCCCcCChHHHHHHHHhCCcccEEeccCCC--CCCc
Q 001704 390 SNMAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCP--NISL 467 (1024)
Q Consensus 390 ~~l~~~~~~~~~L~~L~L~~~~~i~~~~l~~~~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~--~l~~ 467 (1024)
..+..+|.|+.+.+..| .+...+++.-+..+..|+.|+|+.|. +. +.+..+ .+-.++-.|+|++|. .||.
T Consensus 72 ----GELs~Lp~LRsv~~R~N-~LKnsGiP~diF~l~dLt~lDLShNq-L~-EvP~~L-E~AKn~iVLNLS~N~IetIPn 143 (1255)
T KOG0444|consen 72 ----GELSDLPRLRSVIVRDN-NLKNSGIPTDIFRLKDLTILDLSHNQ-LR-EVPTNL-EYAKNSIVLNLSYNNIETIPN 143 (1255)
T ss_pred ----hhhccchhhHHHhhhcc-ccccCCCCchhcccccceeeecchhh-hh-hcchhh-hhhcCcEEEEcccCccccCCc
Confidence 23456677888888877 46667777777788888888888887 32 122222 245566677777664 3332
Q ss_pred c-ccCCCCccEEEecCCCCCChhHHHhhhcCCCccEEEecCCCCCccccccCCcCceEeecccccccccccccccccccc
Q 001704 468 E-SVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLELPRLQNIRLVHCRKFADLNLRAMMLSSIM 546 (1024)
Q Consensus 468 ~-~~~~~~L~~L~L~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~l~~~~l~~l~ 546 (1024)
. +.++..|-.|+|+++ . -+..+..+..+.+|++|+|++|+ +....
T Consensus 144 ~lfinLtDLLfLDLS~N-r-Le~LPPQ~RRL~~LqtL~Ls~NP--------------------------------L~hfQ 189 (1255)
T KOG0444|consen 144 SLFINLTDLLFLDLSNN-R-LEMLPPQIRRLSMLQTLKLSNNP--------------------------------LNHFQ 189 (1255)
T ss_pred hHHHhhHhHhhhccccc-h-hhhcCHHHHHHhhhhhhhcCCCh--------------------------------hhHHH
Confidence 2 234444555555543 1 22223334444444455444443 32222
Q ss_pred ccc---ccccceecccccccccccccchhhHHHHHHhcCcccEEeccCCcCchhhhhhhhcCCCCCCCccEEeccCCCCC
Q 001704 547 VSN---CAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGL 623 (1024)
Q Consensus 547 l~~---~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~L~~L~Ls~c~~l~~~~~~~l~~~~~~~~L~~L~l~~c~~l 623 (1024)
+.. +++|+.|.+++.+=+-..++ ..+. .+.+|..++++. +.++.. |+.+ ..+++|+.|+++++. |
T Consensus 190 LrQLPsmtsL~vLhms~TqRTl~N~P--tsld----~l~NL~dvDlS~-N~Lp~v-Pecl---y~l~~LrrLNLS~N~-i 257 (1255)
T KOG0444|consen 190 LRQLPSMTSLSVLHMSNTQRTLDNIP--TSLD----DLHNLRDVDLSE-NNLPIV-PECL---YKLRNLRRLNLSGNK-I 257 (1255)
T ss_pred HhcCccchhhhhhhcccccchhhcCC--Cchh----hhhhhhhccccc-cCCCcc-hHHH---hhhhhhheeccCcCc-e
Confidence 223 33344444544432211111 1122 234777777776 455432 2333 456777777777654 4
Q ss_pred ceeccccCccceeecccCcccccccccCCCccEEEcCCCCCcccccccccccceeeccCCCCccccccccccceEEeeec
Q 001704 624 TVVRFCSTSLVSLSLVGCRAITALELKCPILEKVCLDGCDHIESASFVPVALQSLNLGICPKLSTLGIEALHMVVLELKG 703 (1024)
Q Consensus 624 ~~l~~~~~~l~~l~l~~~~~l~~l~~~~~~L~~L~l~~c~~l~~~~~~p~~L~~L~l~~~~~L~~L~l~~n~l~~l~l~~ 703 (1024)
+.+.. ......+|+.|.++.|.+
T Consensus 258 teL~~--------------------------------------------------~~~~W~~lEtLNlSrNQL------- 280 (1255)
T KOG0444|consen 258 TELNM--------------------------------------------------TEGEWENLETLNLSRNQL------- 280 (1255)
T ss_pred eeeec--------------------------------------------------cHHHHhhhhhhccccchh-------
Confidence 33210 033345666777777776
Q ss_pred ccccCccccCCCcccEEecccCCCCchhhHhhhhhcCCCccEEEeccCCCCCchhhhhhccCCCCCEEecCCCccCCchh
Q 001704 704 CGVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLEP 783 (1024)
Q Consensus 704 ~~~l~~~~~~~~~L~~L~L~~~~~l~d~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~l~~ 783 (1024)
..+|+++..++.|+.|.+.+| +++=+++|..++.+.+|+.+..++|... ..+.++..+..|+.|.|+.|++..+|.
T Consensus 281 -t~LP~avcKL~kL~kLy~n~N-kL~FeGiPSGIGKL~~Levf~aanN~LE--lVPEglcRC~kL~kL~L~~NrLiTLPe 356 (1255)
T KOG0444|consen 281 -TVLPDAVCKLTKLTKLYANNN-KLTFEGIPSGIGKLIQLEVFHAANNKLE--LVPEGLCRCVKLQKLKLDHNRLITLPE 356 (1255)
T ss_pred -ccchHHHhhhHHHHHHHhccC-cccccCCccchhhhhhhHHHHhhccccc--cCchhhhhhHHHHHhcccccceeechh
Confidence 677778888888888888776 5766677777777777777777776532 235677777777777888887777777
Q ss_pred hhhcCCCCcEEEecCCCCcc
Q 001704 784 VFESCLQLKVLKLQACKYLT 803 (1024)
Q Consensus 784 ~~~~~~~L~~L~l~~c~~l~ 803 (1024)
.+.-++-|++|++..|+++-
T Consensus 357 aIHlL~~l~vLDlreNpnLV 376 (1255)
T KOG0444|consen 357 AIHLLPDLKVLDLRENPNLV 376 (1255)
T ss_pred hhhhcCCcceeeccCCcCcc
Confidence 77777778888887777654
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.74 E-value=2.7e-21 Score=200.30 Aligned_cols=456 Identities=20% Similarity=0.230 Sum_probs=229.6
Q ss_pred CCEEEccCcccchHHHHhhcCCCCCCEEEecCCCCCCCcccccccCCcccEEEecccccchhcccCCCCceecccCccHH
Q 001704 314 LEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSIRCPQLEHLSLKRSNMA 393 (1024)
Q Consensus 314 L~~L~L~~~~i~~~~~~~l~~~~~L~~L~L~~~~l~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~L~~L~L~~~~l~ 393 (1024)
|+.|.++.|.+.. +...+.++..|..|++++|.+.. +|..++.+..++.|+.+++.+..++
T Consensus 47 l~~lils~N~l~~-l~~dl~nL~~l~vl~~~~n~l~~-lp~aig~l~~l~~l~vs~n~ls~lp----------------- 107 (565)
T KOG0472|consen 47 LQKLILSHNDLEV-LREDLKNLACLTVLNVHDNKLSQ-LPAAIGELEALKSLNVSHNKLSELP----------------- 107 (565)
T ss_pred hhhhhhccCchhh-ccHhhhcccceeEEEeccchhhh-CCHHHHHHHHHHHhhcccchHhhcc-----------------
Confidence 4445555554433 23334455555555555555442 3333444444455555544444333
Q ss_pred HHHhcCCCccEEEEeCCCCCChHHHHHHHhcCCCCCEEEecCCCcCChHHHHHHHHhCCcccEEeccCCC--CCCccccC
Q 001704 394 QAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCP--NISLESVR 471 (1024)
Q Consensus 394 ~~~~~~~~L~~L~L~~~~~i~~~~l~~~~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~--~l~~~~~~ 471 (1024)
..+...++|..|+.+.+. +. .++..++.+..|..|+-.+|. ++. .+..++ +|.+|..|++.++. .++....+
T Consensus 108 ~~i~s~~~l~~l~~s~n~-~~--el~~~i~~~~~l~dl~~~~N~-i~s-lp~~~~-~~~~l~~l~~~~n~l~~l~~~~i~ 181 (565)
T KOG0472|consen 108 EQIGSLISLVKLDCSSNE-LK--ELPDSIGRLLDLEDLDATNNQ-ISS-LPEDMV-NLSKLSKLDLEGNKLKALPENHIA 181 (565)
T ss_pred HHHhhhhhhhhhhccccc-ee--ecCchHHHHhhhhhhhccccc-ccc-CchHHH-HHHHHHHhhccccchhhCCHHHHH
Confidence 223333444444444432 11 122223334444444444444 211 122222 44445555555543 33333344
Q ss_pred CCCccEEEecCCCCCChhHHHhhhcCCCccEEEecCCCCCccccccCCcCceEeeccccccccccccccccccc---ccc
Q 001704 472 LPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLELPRLQNIRLVHCRKFADLNLRAMMLSSI---MVS 548 (1024)
Q Consensus 472 ~~~L~~L~L~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~l~~~~l~~l---~l~ 548 (1024)
++.|++|+... +.-...+..++.+.+|+.|++..|++ ..+| .+.+|..+.++.+..|.++.+ ...
T Consensus 182 m~~L~~ld~~~--N~L~tlP~~lg~l~~L~~LyL~~Nki-~~lP---------ef~gcs~L~Elh~g~N~i~~lpae~~~ 249 (565)
T KOG0472|consen 182 MKRLKHLDCNS--NLLETLPPELGGLESLELLYLRRNKI-RFLP---------EFPGCSLLKELHVGENQIEMLPAEHLK 249 (565)
T ss_pred HHHHHhcccch--hhhhcCChhhcchhhhHHHHhhhccc-ccCC---------CCCccHHHHHHHhcccHHHhhHHHHhc
Confidence 55555555544 23444555666667777777777653 3333 334677777777777776665 455
Q ss_pred cccccceecccccccccccccchhhHHHHHHhcCcccEEeccCCcCchhhhhhhhcCCCCCCCccEEeccCCCCCceecc
Q 001704 549 NCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVVRF 628 (1024)
Q Consensus 549 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~L~~L~Ls~c~~l~~~~~~~l~~~~~~~~L~~L~l~~c~~l~~l~~ 628 (1024)
+++.+..|++..|+++..... +. .+.+|++||+++ +.++.-. ..+ +.+ .|+.|.+.+++ +..+..
T Consensus 250 ~L~~l~vLDLRdNklke~Pde----~c----lLrsL~rLDlSN-N~is~Lp-~sL---gnl-hL~~L~leGNP-lrTiRr 314 (565)
T KOG0472|consen 250 HLNSLLVLDLRDNKLKEVPDE----IC----LLRSLERLDLSN-NDISSLP-YSL---GNL-HLKFLALEGNP-LRTIRR 314 (565)
T ss_pred ccccceeeeccccccccCchH----HH----HhhhhhhhcccC-CccccCC-ccc---ccc-eeeehhhcCCc-hHHHHH
Confidence 777888888888888765422 11 346788888888 5665532 223 555 78888888776 433311
Q ss_pred cc----C--ccceeecccCcccccccccCCCccEEEcCCCCCcccccccccccceeeccCCCCccccccccccceEEeee
Q 001704 629 CS----T--SLVSLSLVGCRAITALELKCPILEKVCLDGCDHIESASFVPVALQSLNLGICPKLSTLGIEALHMVVLELK 702 (1024)
Q Consensus 629 ~~----~--~l~~l~l~~~~~l~~l~~~~~~L~~L~l~~c~~l~~~~~~p~~L~~L~l~~~~~L~~L~l~~n~l~~l~l~ 702 (1024)
.. + -++.+.= .++.-..+.+ + + . -...+..|. .-.-+.....+.+.|+++.-++
T Consensus 315 ~ii~~gT~~vLKyLrs----~~~~dglS~s--e-----~-~-~e~~~t~~~-~~~~~~~~~i~tkiL~~s~~ql------ 374 (565)
T KOG0472|consen 315 EIISKGTQEVLKYLRS----KIKDDGLSQS--E-----G-G-TETAMTLPS-ESFPDIYAIITTKILDVSDKQL------ 374 (565)
T ss_pred HHHcccHHHHHHHHHH----hhccCCCCCC--c-----c-c-ccccCCCCC-Ccccchhhhhhhhhhccccccc------
Confidence 00 0 0000000 0000000000 0 0 0 000000011 0011234445556666665544
Q ss_pred cccccCccccCCC---cccEEecccCCCCchhhHhhhhhcCCCccEEEeccCCCCCchhhhhhccCCCCCEEecCCCccC
Q 001704 703 GCGVLSDAYINCP---LLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLT 779 (1024)
Q Consensus 703 ~~~~l~~~~~~~~---~L~~L~L~~~~~l~d~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~ 779 (1024)
..+|+.....- -....+++.| ++. .+|..+..+..+.+.-+..+..++. .+..+..+++|+.|++++|.+.
T Consensus 375 --t~VPdEVfea~~~~~Vt~VnfskN-qL~--elPk~L~~lkelvT~l~lsnn~isf-v~~~l~~l~kLt~L~L~NN~Ln 448 (565)
T KOG0472|consen 375 --TLVPDEVFEAAKSEIVTSVNFSKN-QLC--ELPKRLVELKELVTDLVLSNNKISF-VPLELSQLQKLTFLDLSNNLLN 448 (565)
T ss_pred --ccCCHHHHHHhhhcceEEEecccc-hHh--hhhhhhHHHHHHHHHHHhhcCcccc-chHHHHhhhcceeeecccchhh
Confidence 44555433322 2566777776 342 3455444444444444444443432 2466677788888888888888
Q ss_pred CchhhhhcCCCCcEEEecCCCCcchhhhHhhhhcCCCCCCcEEeCCCCccchHHHHHHHhhCCcccEEEecCCC
Q 001704 780 NLEPVFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELLAYCTHLTHVSLNGCG 853 (1024)
Q Consensus 780 ~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l~~c~ 853 (1024)
.+|..+.++..|+.|+++.|. +.. .+..+ -.+..|+.+-.++|++.. ..+..++++.+|..||+.+|.
T Consensus 449 ~LP~e~~~lv~Lq~LnlS~Nr-Fr~-lP~~~---y~lq~lEtllas~nqi~~-vd~~~l~nm~nL~tLDL~nNd 516 (565)
T KOG0472|consen 449 DLPEEMGSLVRLQTLNLSFNR-FRM-LPECL---YELQTLETLLASNNQIGS-VDPSGLKNMRNLTTLDLQNND 516 (565)
T ss_pred hcchhhhhhhhhheecccccc-ccc-chHHH---hhHHHHHHHHhccccccc-cChHHhhhhhhcceeccCCCc
Confidence 888877778888888888775 321 22222 224455666666677754 344457777778888877755
No 13
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.71 E-value=1.2e-16 Score=205.14 Aligned_cols=294 Identities=22% Similarity=0.295 Sum_probs=203.9
Q ss_pred cCCCccEEEcCCCCCcccccccccccceeeccCCCCccccccccccceEEeeecccccCccccCCCcccEEecccCCCCc
Q 001704 650 KCPILEKVCLDGCDHIESASFVPVALQSLNLGICPKLSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLK 729 (1024)
Q Consensus 650 ~~~~L~~L~l~~c~~l~~~~~~p~~L~~L~l~~~~~L~~L~l~~n~l~~l~l~~~~~l~~~~~~~~~L~~L~L~~~~~l~ 729 (1024)
.+++|+.+++++|..++.. |. ++.+++|+.|+++++..- ..+|..+.++++|+.|++++|..++
T Consensus 632 ~l~~Lk~L~Ls~~~~l~~i---p~------ls~l~~Le~L~L~~c~~L-------~~lp~si~~L~~L~~L~L~~c~~L~ 695 (1153)
T PLN03210 632 SLTGLRNIDLRGSKNLKEI---PD------LSMATNLETLKLSDCSSL-------VELPSSIQYLNKLEDLDMSRCENLE 695 (1153)
T ss_pred cCCCCCEEECCCCCCcCcC---Cc------cccCCcccEEEecCCCCc-------cccchhhhccCCCCEEeCCCCCCcC
Confidence 4677888888887665432 21 556677777776654321 5677888889999999999998775
Q ss_pred hhhHhhhhhcCCCccEEEeccCCCCCchhhhhhccCCCCCEEecCCCccCCchhhhhcCCCCcEEEecCCCCcc--hh--
Q 001704 730 DDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLEPVFESCLQLKVLKLQACKYLT--NT-- 805 (1024)
Q Consensus 730 d~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~l~~~~~~~~~L~~L~l~~c~~l~--~~-- 805 (1024)
. +|... ++++|+.|++++|..+... +. ...+|+.|+|++|.+..+|..+ .+++|+.|.+.++.... ..
T Consensus 696 ~--Lp~~i-~l~sL~~L~Lsgc~~L~~~--p~--~~~nL~~L~L~~n~i~~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~ 767 (1153)
T PLN03210 696 I--LPTGI-NLKSLYRLNLSGCSRLKSF--PD--ISTNISWLDLDETAIEEFPSNL-RLENLDELILCEMKSEKLWERVQ 767 (1153)
T ss_pred c--cCCcC-CCCCCCEEeCCCCCCcccc--cc--ccCCcCeeecCCCccccccccc-cccccccccccccchhhcccccc
Confidence 3 44433 7889999999999765431 21 2468999999999999888755 57899999988754110 00
Q ss_pred hhHhhhhcCCCCCCcEEeCCCCccchHHHHHHHhhCCcccEEEecCCCCccccccccCCCCCCCCCCcccCCCCCCCCCc
Q 001704 806 SLESLYKKGSLPALQELDLSYGTLCQSAIEELLAYCTHLTHVSLNGCGNMHDLNWGASGCQPFESPSVYNSCGIFPHENI 885 (1024)
Q Consensus 806 ~~~~l~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~l~~l~~~~~~~~~ 885 (1024)
....+ ....+++|+.|++++|.... .+|..++++++|+.|++++|..+..+|.+.
T Consensus 768 ~l~~~-~~~~~~sL~~L~Ls~n~~l~-~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~----------------------- 822 (1153)
T PLN03210 768 PLTPL-MTMLSPSLTRLFLSDIPSLV-ELPSSIQNLHKLEHLEIENCINLETLPTGI----------------------- 822 (1153)
T ss_pred ccchh-hhhccccchheeCCCCCCcc-ccChhhhCCCCCCEEECCCCCCcCeeCCCC-----------------------
Confidence 00000 01246799999999987654 467778999999999999999877654321
Q ss_pred ccccccccccccceeccCCCCccccccccccccCCccEEEecCcCCcchhh---hcccccceeecccCCCCceeec---c
Q 001704 886 HESIDQPNRLLQNLNCVGCPNIRKVFIPPQARCFHLSSLNLSLSANLKEVD---VACFNLCFLNLSNCCSLETLKL---D 959 (1024)
Q Consensus 886 ~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~---~~~~~L~~L~l~~c~~L~~l~~---~ 959 (1024)
.+++|+.|++.+|.+++. +|.. ..+|+.|++++ ..+..++ ..+++|+.|++++|+.|+.+.. .
T Consensus 823 ------~L~sL~~L~Ls~c~~L~~--~p~~--~~nL~~L~Ls~-n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~ 891 (1153)
T PLN03210 823 ------NLESLESLDLSGCSRLRT--FPDI--STNISDLNLSR-TGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISK 891 (1153)
T ss_pred ------CccccCEEECCCCCcccc--cccc--ccccCEeECCC-CCCccChHHHhcCCCCCEEECCCCCCcCccCccccc
Confidence 146789999999998887 4432 46899999987 3444443 3688999999999999988764 4
Q ss_pred CCccceEEecccc-CChhhH---HHH--------HhcCCcCcEEecccCCCCChhh
Q 001704 960 CPKLTSLFLQSCN-IDEEGV---ESA--------ITQCGMLETLDVRFCPKICSTS 1003 (1024)
Q Consensus 960 ~~~L~~L~l~~~~-i~~~~l---~~~--------~~~~~sL~~L~l~~c~~l~~~~ 1003 (1024)
+++|+.|++++|. ++...+ |.. ...+++...+...+|.++....
T Consensus 892 L~~L~~L~l~~C~~L~~~~l~~~~~~~~~~~~n~~~~~p~~~~l~f~nC~~L~~~a 947 (1153)
T PLN03210 892 LKHLETVDFSDCGALTEASWNGSPSEVAMATDNIHSKLPSTVCINFINCFNLDQEA 947 (1153)
T ss_pred ccCCCeeecCCCcccccccCCCCchhhhhhcccccccCCchhccccccccCCCchh
Confidence 7888889999997 532211 111 1123444556677777766544
No 14
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.70 E-value=4e-16 Score=200.42 Aligned_cols=309 Identities=22% Similarity=0.257 Sum_probs=175.3
Q ss_pred cccEEeccCCC--CCCccccCCCCccEEEecCCCCCChhHHHhhhcCCCccEEEecCCCCCccccc--cCCcCceEeecc
Q 001704 453 NLRILNSSYCP--NISLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSL--ELPRLQNIRLVH 528 (1024)
Q Consensus 453 ~L~~L~L~~~~--~l~~~~~~~~~L~~L~L~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~--~~~~L~~L~l~~ 528 (1024)
+|+.|++.+++ .+|..+ ...+|++|++.++ .+. ..+..+..+++|+.|+++++..++.+|. .+++|+.|.+.+
T Consensus 590 ~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s-~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~ 666 (1153)
T PLN03210 590 KLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGS-KLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSD 666 (1153)
T ss_pred ccEEEEecCCCCCCCCCcC-CccCCcEEECcCc-ccc-ccccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecC
Confidence 56666666554 333332 4556666666664 232 2233344566666666666655544442 133444444444
Q ss_pred cccccccccccccccccccccccccceecccccccccccccchhhHHHHHHhcCcccEEeccCCcCchhhhhhhhcCCCC
Q 001704 529 CRKFADLNLRAMMLSSIMVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGG 608 (1024)
Q Consensus 529 c~~L~~l~l~~~~l~~l~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~L~~L~Ls~c~~l~~~~~~~l~~~~~ 608 (1024)
|..+..+.- .+.++ ++|+.|++++|+.++.... ...
T Consensus 667 c~~L~~lp~--------si~~L-------------------------------~~L~~L~L~~c~~L~~Lp~-----~i~ 702 (1153)
T PLN03210 667 CSSLVELPS--------SIQYL-------------------------------NKLEDLDMSRCENLEILPT-----GIN 702 (1153)
T ss_pred CCCccccch--------hhhcc-------------------------------CCCCEEeCCCCCCcCccCC-----cCC
Confidence 433322210 12233 4455555555444432110 013
Q ss_pred CCCccEEeccCCCCCceeccccCccceeecccCcccccccc--cCCCccEEEcCCCCCcccccccccccceeeccCCCCc
Q 001704 609 CPMLKSLVLDNCEGLTVVRFCSTSLVSLSLVGCRAITALEL--KCPILEKVCLDGCDHIESASFVPVALQSLNLGICPKL 686 (1024)
Q Consensus 609 ~~~L~~L~l~~c~~l~~l~~~~~~l~~l~l~~~~~l~~l~~--~~~~L~~L~l~~c~~l~~~~~~p~~L~~L~l~~~~~L 686 (1024)
+++|+.|++++|..+..++....+++.+++.+.. +..+.. .+++|+.|.+.++....-.+.. ..+..+....+++|
T Consensus 703 l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~-i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~-~~l~~~~~~~~~sL 780 (1153)
T PLN03210 703 LKSLYRLNLSGCSRLKSFPDISTNISWLDLDETA-IEEFPSNLRLENLDELILCEMKSEKLWERV-QPLTPLMTMLSPSL 780 (1153)
T ss_pred CCCCCEEeCCCCCCccccccccCCcCeeecCCCc-cccccccccccccccccccccchhhccccc-cccchhhhhccccc
Confidence 4455555555554444443333344444444432 232221 3456666666554321110000 00111112334566
Q ss_pred cccccccccceEEeeecccccCccccCCCcccEEecccCCCCchhhHhhhhhcCCCccEEEeccCCCCCchhhhhhccCC
Q 001704 687 STLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQ 766 (1024)
Q Consensus 687 ~~L~l~~n~l~~l~l~~~~~l~~~~~~~~~L~~L~L~~~~~l~d~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~l~ 766 (1024)
+.|++++|... ..+|..+.++++|+.|++++|.++. .+|... .+++|+.|++++|..+... .. ..+
T Consensus 781 ~~L~Ls~n~~l-------~~lP~si~~L~~L~~L~Ls~C~~L~--~LP~~~-~L~sL~~L~Ls~c~~L~~~--p~--~~~ 846 (1153)
T PLN03210 781 TRLFLSDIPSL-------VELPSSIQNLHKLEHLEIENCINLE--TLPTGI-NLESLESLDLSGCSRLRTF--PD--IST 846 (1153)
T ss_pred hheeCCCCCCc-------cccChhhhCCCCCCEEECCCCCCcC--eeCCCC-CccccCEEECCCCCccccc--cc--ccc
Confidence 77777665432 5678888899999999999987775 345443 6889999999999766431 11 236
Q ss_pred CCCEEecCCCccCCchhhhhcCCCCcEEEecCCCCcchhhhHhhhhcCCCCCCcEEeCCCCc
Q 001704 767 NLTMLDLSYTFLTNLEPVFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGT 828 (1024)
Q Consensus 767 ~L~~L~Ls~n~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~l~~L~~L~l~~n~ 828 (1024)
+|+.|+|++|.+..+|..+..+++|+.|++++|+.++..... + ..++.|+.|++++|.
T Consensus 847 nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~-~---~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 847 NISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLN-I---SKLKHLETVDFSDCG 904 (1153)
T ss_pred ccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcc-c---ccccCCCeeecCCCc
Confidence 899999999999999998999999999999999988875443 2 567888888888874
No 15
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.69 E-value=1.3e-17 Score=174.90 Aligned_cols=299 Identities=27% Similarity=0.466 Sum_probs=189.0
Q ss_pred CCccEEEEeCCCCCChHHHHHHHhcCCCCCEEEecCCCcCChHHHHHHHHhCCcccEEeccCCCCCCccccCCCCccEEE
Q 001704 400 PLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCPNISLESVRLPMLTVLQ 479 (1024)
Q Consensus 400 ~~L~~L~L~~~~~i~~~~l~~~~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~~~~~~~~L~~L~ 479 (1024)
..|+.|.+.+|..+.+..+..+..+||++++|.+.+|..+++..+..+.+.|++|++|++..|
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c----------------- 200 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSC----------------- 200 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhccc-----------------
Confidence 458889999998888888889999999999999999999999999999988888887777655
Q ss_pred ecCCCCCChhHHHhhhc-CCCccEEEecCCCCCccccccCCcCceEeecccccccccccccccccccccccccccceecc
Q 001704 480 LHSCEGITSASMAAISH-SYMLEVLELDNCNLLTSVSLELPRLQNIRLVHCRKFADLNLRAMMLSSIMVSNCAALHRINI 558 (1024)
Q Consensus 480 L~~~~~l~~~~~~~l~~-~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~l~~~~l~~l~l~~~~~L~~L~l 558 (1024)
..+++..+..++. +++|++|+++.|..+..
T Consensus 201 ----~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~--------------------------------------------- 231 (483)
T KOG4341|consen 201 ----SSITDVSLKYLAEGCRKLKYLNLSWCPQISG--------------------------------------------- 231 (483)
T ss_pred ----chhHHHHHHHHHHhhhhHHHhhhccCchhhc---------------------------------------------
Confidence 4556666554444 44444444444432111
Q ss_pred cccccccccccchhhHHHHHHhcCcccEEeccCCcCchhhhhhhhcCCCCCCCccEEeccCCCCCceeccccCccceeec
Q 001704 559 TSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVVRFCSTSLVSLSL 638 (1024)
Q Consensus 559 ~~n~l~~~~~~~~~~l~~l~~~~~~L~~L~Ls~c~~l~~~~~~~l~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~l~l 638 (1024)
.+++.+...|..++.+.+++|..++.......+ +.++-+.++++..|..+|+.
T Consensus 232 -------------~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~--~~~~~i~~lnl~~c~~lTD~------------ 284 (483)
T KOG4341|consen 232 -------------NGVQALQRGCKELEKLSLKGCLELELEALLKAA--AYCLEILKLNLQHCNQLTDE------------ 284 (483)
T ss_pred -------------CcchHHhccchhhhhhhhcccccccHHHHHHHh--ccChHhhccchhhhccccch------------
Confidence 112233334445555555566666655544443 45555666666666555543
Q ss_pred ccCcccccccccCCCccEEEcCCCCCcccccccccccceeeccCCCCccccccccccceEEeeecccccCccccCCCccc
Q 001704 639 VGCRAITALELKCPILEKVCLDGCDHIESASFVPVALQSLNLGICPKLSTLGIEALHMVVLELKGCGVLSDAYINCPLLT 718 (1024)
Q Consensus 639 ~~~~~l~~l~~~~~~L~~L~l~~c~~l~~~~~~p~~L~~L~l~~~~~L~~L~l~~n~l~~l~l~~~~~l~~~~~~~~~L~ 718 (1024)
.+..+.-.+ ..|+
T Consensus 285 ----~~~~i~~~c---------------------------------------------------------------~~lq 297 (483)
T KOG4341|consen 285 ----DLWLIACGC---------------------------------------------------------------HALQ 297 (483)
T ss_pred ----HHHHHhhhh---------------------------------------------------------------hHhh
Confidence 112222223 3344
Q ss_pred EEecccCCCCchhhHhhhhhcCCCccEEEeccCCCCCchhhhhhc-cCCCCCEEecCCCccCC---chhhhhcCCCCcEE
Q 001704 719 SLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLR-SLQNLTMLDLSYTFLTN---LEPVFESCLQLKVL 794 (1024)
Q Consensus 719 ~L~L~~~~~l~d~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~-~l~~L~~L~Ls~n~l~~---l~~~~~~~~~L~~L 794 (1024)
.|+.++|..++|..+.....++++|+.|.+.+|+..++.++..++ +.+.|+.+++..+.... +...-.+|+.|++|
T Consensus 298 ~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~l 377 (483)
T KOG4341|consen 298 VLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVL 377 (483)
T ss_pred hhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccC
Confidence 444444444444444444444444444444444444444444433 33444444444443321 22334579999999
Q ss_pred EecCCCCcchhhhHhhhh-cCCCCCCcEEeCCCCccchHHHHHHHhhCCcccEEEecCCCCcccc
Q 001704 795 KLQACKYLTNTSLESLYK-KGSLPALQELDLSYGTLCQSAIEELLAYCTHLTHVSLNGCGNMHDL 858 (1024)
Q Consensus 795 ~l~~c~~l~~~~~~~l~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l~~c~~l~~~ 858 (1024)
.++.|..+++.+...+.. -.....|+.+.+++++...+...+.+..|++|+.+++.+|..+...
T Consensus 378 slshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~ 442 (483)
T KOG4341|consen 378 SLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKE 442 (483)
T ss_pred ChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhh
Confidence 999999999987776643 2456789999999998877777788899999999999999987653
No 16
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.47 E-value=1e-12 Score=146.70 Aligned_cols=181 Identities=18% Similarity=0.271 Sum_probs=95.0
Q ss_pred cccCCCCCCHHHHHHHHhhCCCceEEEEcCCCchhH----HHHHHHhcCCCCCEEEccCcccc------hHHHHhhcCCC
Q 001704 267 LNFENRKISVEQFEDVCQRYPNATEVNIYGAPAIHL----LVMKAVSLLRNLEALTLGRGQLG------DAFFHALADCS 336 (1024)
Q Consensus 267 l~l~~~~~~~~~l~~l~~~~~~l~~L~L~~~~~~~~----~~~~~l~~l~~L~~L~L~~~~i~------~~~~~~l~~~~ 336 (1024)
+++....+.......++.....++.++++++. +.. .+...+...++|++|+++++.+. ...+..+..++
T Consensus 3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~-l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~ 81 (319)
T cd00116 3 LSLKGELLKTERATELLPKLLCLQVLRLEGNT-LGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC 81 (319)
T ss_pred cccccCcccccchHHHHHHHhhccEEeecCCC-CcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence 33444444434444555556667778887743 321 23444556677777777776655 22345566677
Q ss_pred CCCEEEecCCCCCCCcccccccCC---cccEEEecccccchhcccCCCCceecccCccHHHHHhcC-CCccEEEEeCCCC
Q 001704 337 MLKSLNVNDATLGNGVQEIPINHD---QLRRLEITKCRVMRVSIRCPQLEHLSLKRSNMAQAVLNC-PLLHLLDIASCHK 412 (1024)
Q Consensus 337 ~L~~L~L~~~~l~~~l~~~~~~~~---~L~~L~L~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~-~~L~~L~L~~~~~ 412 (1024)
+|++|++++|.+....+..+..+. +|++|++++|.+..... ..+...+..+ ++|+.|++++|.
T Consensus 82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~------------~~l~~~l~~~~~~L~~L~L~~n~- 148 (319)
T cd00116 82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGL------------RLLAKGLKDLPPALEKLVLGRNR- 148 (319)
T ss_pred ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHH------------HHHHHHHHhCCCCceEEEcCCCc-
Confidence 777777777776543333332222 25555555554331000 0011233444 667777777663
Q ss_pred CChH---HHHHHHhcCCCCCEEEecCCCcCChHHHHHHHHhC---CcccEEeccCC
Q 001704 413 LSDA---AIRLAATSCPQLESLDMSNCSCVSDESLREIALSC---ANLRILNSSYC 462 (1024)
Q Consensus 413 i~~~---~l~~~~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~---~~L~~L~L~~~ 462 (1024)
++.. .+...+..+++|++|++++|. +++..+..+...+ ++|++|++++|
T Consensus 149 l~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n 203 (319)
T cd00116 149 LEGASCEALAKALRANRDLKELNLANNG-IGDAGIRALAEGLKANCNLEVLDLNNN 203 (319)
T ss_pred CCchHHHHHHHHHHhCCCcCEEECcCCC-CchHHHHHHHHHHHhCCCCCEEeccCC
Confidence 4422 233344555667777777766 5555544443322 35555555554
No 17
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.38 E-value=4.4e-12 Score=141.56 Aligned_cols=241 Identities=18% Similarity=0.198 Sum_probs=143.0
Q ss_pred ccccccCCCCCCHHH---HHHHHhhCCCceEEEEcCCCchh------HHHHHHHhcCCCCCEEEccCcccchHHHHhhcC
Q 001704 264 WRCLNFENRKISVEQ---FEDVCQRYPNATEVNIYGAPAIH------LLVMKAVSLLRNLEALTLGRGQLGDAFFHALAD 334 (1024)
Q Consensus 264 ~~~l~l~~~~~~~~~---l~~l~~~~~~l~~L~L~~~~~~~------~~~~~~l~~l~~L~~L~L~~~~i~~~~~~~l~~ 334 (1024)
...+++....+.... +.......+.++++++++. .+. ..++..+..+++|+.|++++|.+.+..+..+..
T Consensus 25 L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~-~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 103 (319)
T cd00116 25 LQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLN-ETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLES 103 (319)
T ss_pred ccEEeecCCCCcHHHHHHHHHHHhhCCCceEEecccc-ccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHH
Confidence 335666666665443 3444556777899998874 233 334566778899999999999887655555544
Q ss_pred C---CCCCEEEecCCCCCCC----cccccccC-CcccEEEecccccch-----hc---ccCCCCceecccCccHH-----
Q 001704 335 C---SMLKSLNVNDATLGNG----VQEIPINH-DQLRRLEITKCRVMR-----VS---IRCPQLEHLSLKRSNMA----- 393 (1024)
Q Consensus 335 ~---~~L~~L~L~~~~l~~~----l~~~~~~~-~~L~~L~L~~~~~~~-----~~---~~~~~L~~L~L~~~~l~----- 393 (1024)
+ ++|++|++++|.+.+. +...+..+ ++|+.|++.+|.+.. +. ..+++|++|+++++.+.
T Consensus 104 l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 183 (319)
T cd00116 104 LLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIR 183 (319)
T ss_pred HhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHH
Confidence 4 4499999999987732 22334455 788888888887652 11 24556777777666544
Q ss_pred ---HHHhcCCCccEEEEeCCCCCChHHH---HHHHhcCCCCCEEEecCCCcCChHHHHHHHHhC----CcccEEeccCCC
Q 001704 394 ---QAVLNCPLLHLLDIASCHKLSDAAI---RLAATSCPQLESLDMSNCSCVSDESLREIALSC----ANLRILNSSYCP 463 (1024)
Q Consensus 394 ---~~~~~~~~L~~L~L~~~~~i~~~~l---~~~~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~----~~L~~L~L~~~~ 463 (1024)
..+..+++|++|++++| .+++... ...+..+++|++|++++|. +++..+..+...+ +.|++|++++|.
T Consensus 184 ~l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~~~~~~~L~~L~ls~n~-l~~~~~~~l~~~~~~~~~~L~~L~l~~n~ 261 (319)
T cd00116 184 ALAEGLKANCNLEVLDLNNN-GLTDEGASALAETLASLKSLEVLNLGDNN-LTDAGAAALASALLSPNISLLTLSLSCND 261 (319)
T ss_pred HHHHHHHhCCCCCEEeccCC-ccChHHHHHHHHHhcccCCCCEEecCCCc-CchHHHHHHHHHHhccCCCceEEEccCCC
Confidence 12334457777777776 3544332 2334556677777777776 6666666655443 466666666663
Q ss_pred CC-------CccccCCCCccEEEecCCCCCChhHHHhhhc----C-CCccEEEecCC
Q 001704 464 NI-------SLESVRLPMLTVLQLHSCEGITSASMAAISH----S-YMLEVLELDNC 508 (1024)
Q Consensus 464 ~l-------~~~~~~~~~L~~L~L~~~~~l~~~~~~~l~~----~-~~L~~L~l~~~ 508 (1024)
.- ......+++|+++++++| .+.+.+...++. . +.|+.|++.++
T Consensus 262 i~~~~~~~l~~~~~~~~~L~~l~l~~N-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (319)
T cd00116 262 ITDDGAKDLAEVLAEKESLLELDLRGN-KFGEEGAQLLAESLLEPGNELESLWVKDD 317 (319)
T ss_pred CCcHHHHHHHHHHhcCCCccEEECCCC-CCcHHHHHHHHHHHhhcCCchhhcccCCC
Confidence 11 112223455666666554 444443333321 1 45555555444
No 18
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.34 E-value=6.4e-12 Score=149.79 Aligned_cols=110 Identities=22% Similarity=0.194 Sum_probs=64.4
Q ss_pred CCccEEEecCCCCCccccccCC-cCceEeecccccccccccccccccccccccccccceecccccccccccccchhhHHH
Q 001704 498 YMLEVLELDNCNLLTSVSLELP-RLQNIRLVHCRKFADLNLRAMMLSSIMVSNCAALHRINITSNSLQKLSLQKQENLTS 576 (1024)
Q Consensus 498 ~~L~~L~l~~~~~~~~~~~~~~-~L~~L~l~~c~~L~~l~l~~~~l~~l~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~ 576 (1024)
..-..|+++.+.+ +.+|..++ +|+. +.+..|.+..+. ...++|++|++++|+++.+..
T Consensus 201 ~~~~~LdLs~~~L-tsLP~~l~~~L~~-----------L~L~~N~Lt~LP-~lp~~Lk~LdLs~N~LtsLP~-------- 259 (788)
T PRK15387 201 NGNAVLNVGESGL-TTLPDCLPAHITT-----------LVIPDNNLTSLP-ALPPELRTLEVSGNQLTSLPV-------- 259 (788)
T ss_pred CCCcEEEcCCCCC-CcCCcchhcCCCE-----------EEccCCcCCCCC-CCCCCCcEEEecCCccCcccC--------
Confidence 5677899999864 46776543 3333 444445544431 235788888888888876531
Q ss_pred HHHhcCcccEEeccCCcCchhhhhhhhcCCCCCCCccEEeccCCCCCceeccccCccceeeccc
Q 001704 577 LALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVVRFCSTSLVSLSLVG 640 (1024)
Q Consensus 577 l~~~~~~L~~L~Ls~c~~l~~~~~~~l~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~l~l~~ 640 (1024)
..++|+.|++++| .++... . ..++|+.|++++|. ++.++...++|+.|++++
T Consensus 260 ---lp~sL~~L~Ls~N-~L~~Lp-~------lp~~L~~L~Ls~N~-Lt~LP~~p~~L~~LdLS~ 311 (788)
T PRK15387 260 ---LPPGLLELSIFSN-PLTHLP-A------LPSGLCKLWIFGNQ-LTSLPVLPPGLQELSVSD 311 (788)
T ss_pred ---cccccceeeccCC-chhhhh-h------chhhcCEEECcCCc-cccccccccccceeECCC
Confidence 1257888888874 555321 1 12567788887764 655543333444444444
No 19
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.34 E-value=5.1e-14 Score=146.83 Aligned_cols=90 Identities=24% Similarity=0.251 Sum_probs=72.1
Q ss_pred hhhccCCCCCEEecCCCccCCchh-hhhcCCCCcEEEecCCCCcchhhhHhhhhcCCCCCCcEEeCCCCccchHHHHHHH
Q 001704 760 YSLRSLQNLTMLDLSYTFLTNLEP-VFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELL 838 (1024)
Q Consensus 760 ~~l~~l~~L~~L~Ls~n~l~~l~~-~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~l~~L~~L~l~~n~l~~~~~~~~l 838 (1024)
..|.++++|+.|++++|.++.+.. .|.+...+++|.+..|+ |..+.-..| ..+..|+.|++++|+|+- ..+..|
T Consensus 268 ~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~-l~~v~~~~f---~~ls~L~tL~L~~N~it~-~~~~aF 342 (498)
T KOG4237|consen 268 KCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNK-LEFVSSGMF---QGLSGLKTLSLYDNQITT-VAPGAF 342 (498)
T ss_pred HHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcch-HHHHHHHhh---hccccceeeeecCCeeEE-Eecccc
Confidence 567788888888888888888755 78888888888888877 776665555 778888888888888875 567778
Q ss_pred hhCCcccEEEecCCCC
Q 001704 839 AYCTHLTHVSLNGCGN 854 (1024)
Q Consensus 839 ~~~~~L~~L~l~~c~~ 854 (1024)
+.+.+|.+|++-+|+.
T Consensus 343 ~~~~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 343 QTLFSLSTLNLLSNPF 358 (498)
T ss_pred cccceeeeeehccCcc
Confidence 8888888888887764
No 20
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.29 E-value=1.7e-11 Score=146.18 Aligned_cols=254 Identities=22% Similarity=0.163 Sum_probs=173.3
Q ss_pred ccccccccccccccccccccceecccccccccccccchhhHHHHHHhcCcccEEeccCCcCchhhhhhhhcCCCCCCCcc
Q 001704 534 DLNLRAMMLSSIMVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLK 613 (1024)
Q Consensus 534 ~l~l~~~~l~~l~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~L~~L~Ls~c~~l~~~~~~~l~~~~~~~~L~ 613 (1024)
.++++.+.+..+--.-.++|+.|.+.+|.++.+.. ..++|++|++++ +.++.. +. ..++|+
T Consensus 205 ~LdLs~~~LtsLP~~l~~~L~~L~L~~N~Lt~LP~-----------lp~~Lk~LdLs~-N~LtsL-P~------lp~sL~ 265 (788)
T PRK15387 205 VLNVGESGLTTLPDCLPAHITTLVIPDNNLTSLPA-----------LPPELRTLEVSG-NQLTSL-PV------LPPGLL 265 (788)
T ss_pred EEEcCCCCCCcCCcchhcCCCEEEccCCcCCCCCC-----------CCCCCcEEEecC-CccCcc-cC------cccccc
Confidence 44555555555421223578999999999987532 247999999999 577743 21 247899
Q ss_pred EEeccCCCCCceeccccCccceeecccCcccccccccCCCccEEEcCCCCCcccccccccccceeeccCCCCcccccccc
Q 001704 614 SLVLDNCEGLTVVRFCSTSLVSLSLVGCRAITALELKCPILEKVCLDGCDHIESASFVPVALQSLNLGICPKLSTLGIEA 693 (1024)
Q Consensus 614 ~L~l~~c~~l~~l~~~~~~l~~l~l~~~~~l~~l~~~~~~L~~L~l~~c~~l~~~~~~p~~L~~L~l~~~~~L~~L~l~~ 693 (1024)
.|++.+|. ++.++.....++.|++.++ .++.+....++|+.|+++++ .++.....|. .|+.|.+.+
T Consensus 266 ~L~Ls~N~-L~~Lp~lp~~L~~L~Ls~N-~Lt~LP~~p~~L~~LdLS~N-~L~~Lp~lp~-----------~L~~L~Ls~ 331 (788)
T PRK15387 266 ELSIFSNP-LTHLPALPSGLCKLWIFGN-QLTSLPVLPPGLQELSVSDN-QLASLPALPS-----------ELCKLWAYN 331 (788)
T ss_pred eeeccCCc-hhhhhhchhhcCEEECcCC-ccccccccccccceeECCCC-ccccCCCCcc-----------ccccccccc
Confidence 99999986 7777666677888888886 57777666788999999987 4443322232 355666677
Q ss_pred ccceEEeeecccccCccccCCCcccEEecccCCCCchhhHhhhhhcCCCccEEEeccCCCCCchhhhhhccCCCCCEEec
Q 001704 694 LHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDL 773 (1024)
Q Consensus 694 n~l~~l~l~~~~~l~~~~~~~~~L~~L~L~~~~~l~d~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~L 773 (1024)
|.+ ..+|.. .++|+.|++++| +++. +|.. .++|+.|++.+|.... ++.+ ..+|+.|++
T Consensus 332 N~L--------~~LP~l---p~~Lq~LdLS~N-~Ls~--LP~l---p~~L~~L~Ls~N~L~~---LP~l--~~~L~~LdL 389 (788)
T PRK15387 332 NQL--------TSLPTL---PSGLQELSVSDN-QLAS--LPTL---PSELYKLWAYNNRLTS---LPAL--PSGLKELIV 389 (788)
T ss_pred Ccc--------cccccc---ccccceEecCCC-ccCC--CCCC---Ccccceehhhcccccc---Cccc--ccccceEEe
Confidence 766 334432 247888888887 5653 3332 3567888888876432 1222 357888888
Q ss_pred CCCccCCchhhhhcCCCCcEEEecCCCCcchhhhHhhhhcCCCCCCcEEeCCCCccchHHHHHHHhhCCcccEEEecCCC
Q 001704 774 SYTFLTNLEPVFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELLAYCTHLTHVSLNGCG 853 (1024)
Q Consensus 774 s~n~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l~~c~ 853 (1024)
++|.++++|.. .++|+.|++++|. ++... . .+..|+.|++++|.++ .+|..+..+++|+.|++++|+
T Consensus 390 s~N~Lt~LP~l---~s~L~~LdLS~N~-LssIP--~-----l~~~L~~L~Ls~NqLt--~LP~sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 390 SGNRLTSLPVL---PSELKELMVSGNR-LTSLP--M-----LPSGLLSLSVYRNQLT--RLPESLIHLSSETTVNLEGNP 456 (788)
T ss_pred cCCcccCCCCc---ccCCCEEEccCCc-CCCCC--c-----chhhhhhhhhccCccc--ccChHHhhccCCCeEECCCCC
Confidence 88888887753 3578888888887 66432 1 1456788888888887 467777788888888888887
Q ss_pred Cc
Q 001704 854 NM 855 (1024)
Q Consensus 854 ~l 855 (1024)
.-
T Consensus 457 Ls 458 (788)
T PRK15387 457 LS 458 (788)
T ss_pred CC
Confidence 53
No 21
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.20 E-value=3.6e-13 Score=140.56 Aligned_cols=133 Identities=16% Similarity=0.175 Sum_probs=80.9
Q ss_pred CceEEEEcCCCchhHHHHHHHhcCCCCCEEEccCcccchHHHHhhcCCCCCCEEEecC-CCCCCCcccccccCCcccEEE
Q 001704 288 NATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVND-ATLGNGVQEIPINHDQLRRLE 366 (1024)
Q Consensus 288 ~l~~L~L~~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~~~~~~l~~~~~L~~L~L~~-~~l~~~l~~~~~~~~~L~~L~ 366 (1024)
..+.++|.. +.+..+.+.+|..+++|+.|+|+.|.|+...+.+|..++.|.+|.+.+ |.+...-...+.++..|+.|.
T Consensus 68 ~tveirLdq-N~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLl 146 (498)
T KOG4237|consen 68 ETVEIRLDQ-NQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLL 146 (498)
T ss_pred cceEEEecc-CCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHh
Confidence 466777777 677777778888888888888888888877778887777777766555 655544444455555555554
Q ss_pred ecccccchhcccCCCCceecccCccHHHHHhcCCCccEEEEeCCCCCChHHHHH-HHhcCCCCCEEEecCCCcCC
Q 001704 367 ITKCRVMRVSIRCPQLEHLSLKRSNMAQAVLNCPLLHLLDIASCHKLSDAAIRL-AATSCPQLESLDMSNCSCVS 440 (1024)
Q Consensus 367 L~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~L~~L~L~~~~~i~~~~l~~-~~~~~~~L~~L~L~~~~~l~ 440 (1024)
+.-|.+.-+. ...+..+++|..|.+..+. + ..+.. .+..+..++.+.+..++.+.
T Consensus 147 lNan~i~Cir----------------~~al~dL~~l~lLslyDn~-~--q~i~~~tf~~l~~i~tlhlA~np~ic 202 (498)
T KOG4237|consen 147 LNANHINCIR----------------QDALRDLPSLSLLSLYDNK-I--QSICKGTFQGLAAIKTLHLAQNPFIC 202 (498)
T ss_pred cChhhhcchh----------------HHHHHHhhhcchhcccchh-h--hhhccccccchhccchHhhhcCcccc
Confidence 4443332111 2455566666666665542 1 12222 34555666666666666443
No 22
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.06 E-value=7.1e-10 Score=115.07 Aligned_cols=227 Identities=23% Similarity=0.341 Sum_probs=136.7
Q ss_pred HHHHHhhCCCceEEEEcCCCchhHHHHH----HHhcCCCCCEEEccCc---ccchHHH-------HhhcCCCCCCEEEec
Q 001704 279 FEDVCQRYPNATEVNIYGAPAIHLLVMK----AVSLLRNLEALTLGRG---QLGDAFF-------HALADCSMLKSLNVN 344 (1024)
Q Consensus 279 l~~l~~~~~~l~~L~L~~~~~~~~~~~~----~l~~l~~L~~L~L~~~---~i~~~~~-------~~l~~~~~L~~L~L~ 344 (1024)
+.........++.++|++ +.+.....+ .+.+-++|+..+++.- ...+.+| .++..|++|++|+||
T Consensus 22 v~~~~~~~~s~~~l~lsg-nt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLS 100 (382)
T KOG1909|consen 22 VEEELEPMDSLTKLDLSG-NTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLS 100 (382)
T ss_pred HHHHhcccCceEEEeccC-CchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecc
Confidence 444555677888899998 566544443 4456678888887642 3333333 345568899999999
Q ss_pred CCCCCCC----cccccccCCcccEEEecccccchhc-----------------ccCCCCceecccCccHH--------HH
Q 001704 345 DATLGNG----VQEIPINHDQLRRLEITKCRVMRVS-----------------IRCPQLEHLSLKRSNMA--------QA 395 (1024)
Q Consensus 345 ~~~l~~~----l~~~~~~~~~L~~L~L~~~~~~~~~-----------------~~~~~L~~L~L~~~~l~--------~~ 395 (1024)
+|-|+.. +..++..+..|++|.|.+|.+...+ ..-++|+.+...+|.+. ..
T Consensus 101 DNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~ 180 (382)
T KOG1909|consen 101 DNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEA 180 (382)
T ss_pred ccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHH
Confidence 9988753 4455667888999999888865322 24566777777666543 45
Q ss_pred HhcCCCccEEEEeCCCCCChHHH---HHHHhcCCCCCEEEecCCCcCChHHHHHHHH---hCCcccEEeccCCCCCCc--
Q 001704 396 VLNCPLLHLLDIASCHKLSDAAI---RLAATSCPQLESLDMSNCSCVSDESLREIAL---SCANLRILNSSYCPNISL-- 467 (1024)
Q Consensus 396 ~~~~~~L~~L~L~~~~~i~~~~l---~~~~~~~~~L~~L~L~~~~~l~~~~l~~l~~---~~~~L~~L~L~~~~~l~~-- 467 (1024)
+..++.|+.+.+..|. |...++ ...+..|++|+.|+|.+|. ++..+-..++. .+++|+.|++++|. +..
T Consensus 181 ~~~~~~leevr~~qN~-I~~eG~~al~eal~~~~~LevLdl~DNt-ft~egs~~LakaL~s~~~L~El~l~dcl-l~~~G 257 (382)
T KOG1909|consen 181 FQSHPTLEEVRLSQNG-IRPEGVTALAEALEHCPHLEVLDLRDNT-FTLEGSVALAKALSSWPHLRELNLGDCL-LENEG 257 (382)
T ss_pred HHhccccceEEEeccc-ccCchhHHHHHHHHhCCcceeeecccch-hhhHHHHHHHHHhcccchheeecccccc-ccccc
Confidence 6666777777777763 443333 3345667777777777776 55444444433 34466667776663 111
Q ss_pred ------c-ccCCCCccEEEecCCCCCChhHHHhh----hcCCCccEEEecCCCC
Q 001704 468 ------E-SVRLPMLTVLQLHSCEGITSASMAAI----SHSYMLEVLELDNCNL 510 (1024)
Q Consensus 468 ------~-~~~~~~L~~L~L~~~~~l~~~~~~~l----~~~~~L~~L~l~~~~~ 510 (1024)
. -...|.|+.|.+.+| .++......+ +..+.|+.|++++|..
T Consensus 258 a~a~~~al~~~~p~L~vl~l~gN-eIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 258 AIAFVDALKESAPSLEVLELAGN-EITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHHHHHHHhccCCCCceeccCcc-hhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 0 113566666666665 3443333222 2245566666666553
No 23
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.06 E-value=9.7e-10 Score=132.31 Aligned_cols=250 Identities=22% Similarity=0.244 Sum_probs=145.4
Q ss_pred CCccEEEecCCCCCccccccCC-cCceEeecccccccccccccccccccccccccccceecccccccccccccchhhHHH
Q 001704 498 YMLEVLELDNCNLLTSVSLELP-RLQNIRLVHCRKFADLNLRAMMLSSIMVSNCAALHRINITSNSLQKLSLQKQENLTS 576 (1024)
Q Consensus 498 ~~L~~L~l~~~~~~~~~~~~~~-~L~~L~l~~c~~L~~l~l~~~~l~~l~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~ 576 (1024)
.+...|+++++. ++.+|..++ .|+. +++++|.+..+.....++|+.|++++|.++.+.. .+
T Consensus 178 ~~~~~L~L~~~~-LtsLP~~Ip~~L~~-----------L~Ls~N~LtsLP~~l~~nL~~L~Ls~N~LtsLP~----~l-- 239 (754)
T PRK15370 178 NNKTELRLKILG-LTTIPACIPEQITT-----------LILDNNELKSLPENLQGNIKTLYANSNQLTSIPA----TL-- 239 (754)
T ss_pred cCceEEEeCCCC-cCcCCcccccCCcE-----------EEecCCCCCcCChhhccCCCEEECCCCccccCCh----hh--
Confidence 567889998875 445665433 3444 4444555544422334578888888888775431 11
Q ss_pred HHHhcCcccEEeccCCcCchhhhhhhhcCCCCCCCccEEeccCCCCCceeccccCccceeecccCcccccccccCCCccE
Q 001704 577 LALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVVRFCSTSLVSLSLVGCRAITALELKCPILEK 656 (1024)
Q Consensus 577 l~~~~~~L~~L~Ls~c~~l~~~~~~~l~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~l~l~~~~~l~~l~~~~~~L~~ 656 (1024)
.+.|+.|++++| .++. ++..+ ..+|+.|++++|. ++.++.. -.++|+.
T Consensus 240 ----~~~L~~L~Ls~N-~L~~-LP~~l-----~s~L~~L~Ls~N~-L~~LP~~--------------------l~~sL~~ 287 (754)
T PRK15370 240 ----PDTIQEMELSIN-RITE-LPERL-----PSALQSLDLFHNK-ISCLPEN--------------------LPEELRY 287 (754)
T ss_pred ----hccccEEECcCC-ccCc-CChhH-----hCCCCEEECcCCc-cCccccc--------------------cCCCCcE
Confidence 246888888885 5553 23323 2468888887653 5543210 0135667
Q ss_pred EEcCCCCCcccccccccccceeeccCCCCccccccccccceEEeeecccccCccccCCCcccEEecccCCCCchhhHhhh
Q 001704 657 VCLDGCDHIESASFVPVALQSLNLGICPKLSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDCLSAT 736 (1024)
Q Consensus 657 L~l~~c~~l~~~~~~p~~L~~L~l~~~~~L~~L~l~~n~l~~l~l~~~~~l~~~~~~~~~L~~L~L~~~~~l~d~~l~~~ 736 (1024)
|++++|. ++. +|.. + .+.|+.|++++|.++ .+|..+ .++|+.|++++| .++. ++..
T Consensus 288 L~Ls~N~-Lt~---LP~~-----l--p~sL~~L~Ls~N~Lt--------~LP~~l--~~sL~~L~Ls~N-~Lt~--LP~~ 343 (754)
T PRK15370 288 LSVYDNS-IRT---LPAH-----L--PSGITHLNVQSNSLT--------ALPETL--PPGLKTLEAGEN-ALTS--LPAS 343 (754)
T ss_pred EECCCCc-ccc---Cccc-----c--hhhHHHHHhcCCccc--------cCCccc--cccceeccccCC-cccc--CChh
Confidence 7776653 221 2221 1 135677777777763 344333 357888888887 4542 3432
Q ss_pred hhcCCCccEEEeccCCCCCchhhhhhccCCCCCEEecCCCccCCchhhhhcCCCCcEEEecCCCCcchhhhHhhhh-cCC
Q 001704 737 TTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLEPVFESCLQLKVLKLQACKYLTNTSLESLYK-KGS 815 (1024)
Q Consensus 737 ~~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~-~~~ 815 (1024)
+ +++|+.|++++|.+.. .+..+ .++|+.|+|++|.+..+|..+. ..|+.|++++|. ++... ..+.. ...
T Consensus 344 l--~~sL~~L~Ls~N~L~~--LP~~l--p~~L~~LdLs~N~Lt~LP~~l~--~sL~~LdLs~N~-L~~LP-~sl~~~~~~ 413 (754)
T PRK15370 344 L--PPELQVLDVSKNQITV--LPETL--PPTITTLDVSRNALTNLPENLP--AALQIMQASRNN-LVRLP-ESLPHFRGE 413 (754)
T ss_pred h--cCcccEEECCCCCCCc--CChhh--cCCcCEEECCCCcCCCCCHhHH--HHHHHHhhccCC-cccCc-hhHHHHhhc
Confidence 2 3578888888876432 12223 2578888888888887777543 367788888876 65432 22222 244
Q ss_pred CCCCcEEeCCCCccch
Q 001704 816 LPALQELDLSYGTLCQ 831 (1024)
Q Consensus 816 l~~L~~L~l~~n~l~~ 831 (1024)
++.+..|++.+|+++.
T Consensus 414 ~~~l~~L~L~~Npls~ 429 (754)
T PRK15370 414 GPQPTRIIVEYNPFSE 429 (754)
T ss_pred CCCccEEEeeCCCccH
Confidence 5777888888887764
No 24
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=1.1e-10 Score=117.68 Aligned_cols=197 Identities=19% Similarity=0.307 Sum_probs=144.9
Q ss_pred CceEEEEcCCCchhHHHHHHHhcCCCCCEEEccCcccchHHHHhhcCCCCCCEEEecCCC-CCC-CcccccccCCcccEE
Q 001704 288 NATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDAT-LGN-GVQEIPINHDQLRRL 365 (1024)
Q Consensus 288 ~l~~L~L~~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~~~~~~l~~~~~L~~L~L~~~~-l~~-~l~~~~~~~~~L~~L 365 (1024)
.++++||+...--...+...++.|..|+.|.|.++++.+.+...+++-.+|+.|+|+.++ ++. .+.-++..|..|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 588999998544445566678899999999999999999999999999999999999885 322 344445556666666
Q ss_pred EecccccchhcccCCCCceecccCccHHHH-HhcCCCccEEEEeCCCC-CChHHHHHHHhcCCCCCEEEecCCCcCChHH
Q 001704 366 EITKCRVMRVSIRCPQLEHLSLKRSNMAQA-VLNCPLLHLLDIASCHK-LSDAAIRLAATSCPQLESLDMSNCSCVSDES 443 (1024)
Q Consensus 366 ~L~~~~~~~~~~~~~~L~~L~L~~~~l~~~-~~~~~~L~~L~L~~~~~-i~~~~l~~~~~~~~~L~~L~L~~~~~l~~~~ 443 (1024)
+|+-|.+..- .++.+ ..--++|+.|+|+|+.+ +.+..+..+...||+|.+|+|++|-.+++..
T Consensus 266 NlsWc~l~~~---------------~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~ 330 (419)
T KOG2120|consen 266 NLSWCFLFTE---------------KVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDC 330 (419)
T ss_pred CchHhhccch---------------hhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchH
Confidence 6665543211 01111 22356788888888753 3445677788999999999999998888876
Q ss_pred HHHHHHhCCcccEEeccCCCCCCcc----ccCCCCccEEEecCCCCCChhHHHhhhc-CCCccE
Q 001704 444 LREIALSCANLRILNSSYCPNISLE----SVRLPMLTVLQLHSCEGITSASMAAISH-SYMLEV 502 (1024)
Q Consensus 444 l~~l~~~~~~L~~L~L~~~~~l~~~----~~~~~~L~~L~L~~~~~l~~~~~~~l~~-~~~L~~ 502 (1024)
+.++. .++.|++|.++.|+.+++. +...|.|.+|++.+| +.+..+..+.. +++|+.
T Consensus 331 ~~~~~-kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~--vsdt~mel~~e~~~~lki 391 (419)
T KOG2120|consen 331 FQEFF-KFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGC--VSDTTMELLKEMLSHLKI 391 (419)
T ss_pred HHHHH-hcchheeeehhhhcCCChHHeeeeccCcceEEEEeccc--cCchHHHHHHHhCccccc
Confidence 66666 8999999999999966543 447899999999996 56655655544 555554
No 25
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.01 E-value=1.3e-09 Score=131.15 Aligned_cols=252 Identities=19% Similarity=0.191 Sum_probs=158.9
Q ss_pred CCccEEEecCCCCCChhHHHhhhcCCCccEEEecCCCCCcccccc-CCcCceEeeccccccccccccccccccccccccc
Q 001704 473 PMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLE-LPRLQNIRLVHCRKFADLNLRAMMLSSIMVSNCA 551 (1024)
Q Consensus 473 ~~L~~L~L~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~-~~~L~~L~l~~c~~L~~l~l~~~~l~~l~l~~~~ 551 (1024)
.+...|++++. .++.. +..+ .+.|+.|++++|.+ +.+|.. +++|+.|. +++|.++.+...-.+
T Consensus 178 ~~~~~L~L~~~-~LtsL-P~~I--p~~L~~L~Ls~N~L-tsLP~~l~~nL~~L~-----------Ls~N~LtsLP~~l~~ 241 (754)
T PRK15370 178 NNKTELRLKIL-GLTTI-PACI--PEQITTLILDNNEL-KSLPENLQGNIKTLY-----------ANSNQLTSIPATLPD 241 (754)
T ss_pred cCceEEEeCCC-CcCcC-Cccc--ccCCcEEEecCCCC-CcCChhhccCCCEEE-----------CCCCccccCChhhhc
Confidence 34678888875 34431 2222 25799999999964 455543 23455544 445555544222345
Q ss_pred ccceecccccccccccccchhhHHHHHHhcCcccEEeccCCcCchhhhhhhhcCCCCCCCccEEeccCCCCCceeccccC
Q 001704 552 ALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVVRFCST 631 (1024)
Q Consensus 552 ~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~L~~L~Ls~c~~l~~~~~~~l~~~~~~~~L~~L~l~~c~~l~~l~~~~~ 631 (1024)
+|+.|++++|.+..+.. .+ ..+|+.|++++ +.++. .+..+ +++|+.|++++|. ++.++...
T Consensus 242 ~L~~L~Ls~N~L~~LP~----~l------~s~L~~L~Ls~-N~L~~-LP~~l-----~~sL~~L~Ls~N~-Lt~LP~~l- 302 (754)
T PRK15370 242 TIQEMELSINRITELPE----RL------PSALQSLDLFH-NKISC-LPENL-----PEELRYLSVYDNS-IRTLPAHL- 302 (754)
T ss_pred cccEEECcCCccCcCCh----hH------hCCCCEEECcC-CccCc-ccccc-----CCCCcEEECCCCc-cccCcccc-
Confidence 79999999999886531 11 25899999997 57764 33323 3589999999985 66543210
Q ss_pred ccceeecccCcccccccccCCCccEEEcCCCCCcccccccccccceeeccCCCCccccccccccceEEeeecccccCccc
Q 001704 632 SLVSLSLVGCRAITALELKCPILEKVCLDGCDHIESASFVPVALQSLNLGICPKLSTLGIEALHMVVLELKGCGVLSDAY 711 (1024)
Q Consensus 632 ~l~~l~l~~~~~l~~l~~~~~~L~~L~l~~c~~l~~~~~~p~~L~~L~l~~~~~L~~L~l~~n~l~~l~l~~~~~l~~~~ 711 (1024)
.+.|+.|++++|.. + .+|.. ..++|+.|.+++|.+ ..+|..+
T Consensus 303 -------------------p~sL~~L~Ls~N~L-t---~LP~~-------l~~sL~~L~Ls~N~L--------t~LP~~l 344 (754)
T PRK15370 303 -------------------PSGITHLNVQSNSL-T---ALPET-------LPPGLKTLEAGENAL--------TSLPASL 344 (754)
T ss_pred -------------------hhhHHHHHhcCCcc-c---cCCcc-------ccccceeccccCCcc--------ccCChhh
Confidence 12345555555422 1 12221 124677777777776 3355444
Q ss_pred cCCCcccEEecccCCCCchhhHhhhhhcCCCccEEEeccCCCCCchhhhhhccCCCCCEEecCCCccCCchhhh----hc
Q 001704 712 INCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLEPVF----ES 787 (1024)
Q Consensus 712 ~~~~~L~~L~L~~~~~l~d~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~l~~~~----~~ 787 (1024)
.++|+.|++++| +++. +|..+ .+.|+.|+|++|....- +..+. ..|+.|++++|.+..+|..+ ..
T Consensus 345 --~~sL~~L~Ls~N-~L~~--LP~~l--p~~L~~LdLs~N~Lt~L--P~~l~--~sL~~LdLs~N~L~~LP~sl~~~~~~ 413 (754)
T PRK15370 345 --PPELQVLDVSKN-QITV--LPETL--PPTITTLDVSRNALTNL--PENLP--AALQIMQASRNNLVRLPESLPHFRGE 413 (754)
T ss_pred --cCcccEEECCCC-CCCc--CChhh--cCCcCEEECCCCcCCCC--CHhHH--HHHHHHhhccCCcccCchhHHHHhhc
Confidence 378999999998 5652 44433 36899999999985432 33333 36899999999999877643 44
Q ss_pred CCCCcEEEecCCCCcchhhhHh
Q 001704 788 CLQLKVLKLQACKYLTNTSLES 809 (1024)
Q Consensus 788 ~~~L~~L~l~~c~~l~~~~~~~ 809 (1024)
++++..|++.+|+ ++...+..
T Consensus 414 ~~~l~~L~L~~Np-ls~~tl~~ 434 (754)
T PRK15370 414 GPQPTRIIVEYNP-FSERTIQN 434 (754)
T ss_pred CCCccEEEeeCCC-ccHHHHHH
Confidence 5889999999998 76544443
No 26
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.93 E-value=1.8e-09 Score=112.10 Aligned_cols=262 Identities=23% Similarity=0.298 Sum_probs=162.9
Q ss_pred cccccccceecccccccccccccchhhHHHHHHhcCcccEEeccCC--cCchhhhhhhh----cCCCCCCCccEEeccCC
Q 001704 547 VSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDC--ESLTNSVCEVF----SDGGGCPMLKSLVLDNC 620 (1024)
Q Consensus 547 l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~L~~L~Ls~c--~~l~~~~~~~l----~~~~~~~~L~~L~l~~c 620 (1024)
+.....++++++++|.+.... ...+.......+.|++.++++- -.+.+.+++++ ..+.+||+|+.|+|+++
T Consensus 26 ~~~~~s~~~l~lsgnt~G~EA---a~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDN 102 (382)
T KOG1909|consen 26 LEPMDSLTKLDLSGNTFGTEA---ARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDN 102 (382)
T ss_pred hcccCceEEEeccCCchhHHH---HHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccc
Confidence 445667778888888776432 1222223335567788877762 12222333332 12357788888888887
Q ss_pred CCCceeccccCccceeecccCcccccccccCCCccEEEcCCCCCcccccc-cccccceeeccCCCCccccccccccceEE
Q 001704 621 EGLTVVRFCSTSLVSLSLVGCRAITALELKCPILEKVCLDGCDHIESASF-VPVALQSLNLGICPKLSTLGIEALHMVVL 699 (1024)
Q Consensus 621 ~~l~~l~~~~~~l~~l~l~~~~~l~~l~~~~~~L~~L~l~~c~~l~~~~~-~p~~L~~L~l~~~~~L~~L~l~~n~l~~l 699 (1024)
. + ...+.+.+..+..++..|++|.+.+|..=...|- +... |..+.
T Consensus 103 A-~-------------G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~a-----------l~~l~--------- 148 (382)
T KOG1909|consen 103 A-F-------------GPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRA-----------LFELA--------- 148 (382)
T ss_pred c-c-------------CccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHH-----------HHHHH---------
Confidence 5 1 1122334445555667777777777632211111 0000 11111
Q ss_pred eeecccccCccccCCCcccEEecccCCCCchhh---HhhhhhcCCCccEEEeccCCCCCchh---hhhhccCCCCCEEec
Q 001704 700 ELKGCGVLSDAYINCPLLTSLDASFCSQLKDDC---LSATTTSCPLIESLILMSCQSIGPDG---LYSLRSLQNLTMLDL 773 (1024)
Q Consensus 700 ~l~~~~~l~~~~~~~~~L~~L~L~~~~~l~d~~---l~~~~~~~~~L~~L~L~~~~~~~~~~---~~~l~~l~~L~~L~L 773 (1024)
.......-+.|+.+...+| .+.+++ +...+..++.|+.+.+..|..-...+ ...+..+++|+.|||
T Consensus 149 -------~~kk~~~~~~Lrv~i~~rN-rlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl 220 (382)
T KOG1909|consen 149 -------VNKKAASKPKLRVFICGRN-RLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDL 220 (382)
T ss_pred -------HHhccCCCcceEEEEeecc-ccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeec
Confidence 0111234577888888887 455443 33446778899999999887433222 256778999999999
Q ss_pred CCCccCC-----chhhhhcCCCCcEEEecCCCCcchhhhHhhhh--cCCCCCCcEEeCCCCccchHHHH---HHHhhCCc
Q 001704 774 SYTFLTN-----LEPVFESCLQLKVLKLQACKYLTNTSLESLYK--KGSLPALQELDLSYGTLCQSAIE---ELLAYCTH 843 (1024)
Q Consensus 774 s~n~l~~-----l~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~--~~~l~~L~~L~l~~n~l~~~~~~---~~l~~~~~ 843 (1024)
..|.++. +...+..+++|++|++++|. ++..+...+.. ....|.|+.|.+.+|.|+..... .....-+.
T Consensus 221 ~DNtft~egs~~LakaL~s~~~L~El~l~dcl-l~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~d 299 (382)
T KOG1909|consen 221 RDNTFTLEGSVALAKALSSWPHLRELNLGDCL-LENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPD 299 (382)
T ss_pred ccchhhhHHHHHHHHHhcccchheeecccccc-cccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchh
Confidence 9998883 44577888899999999998 77766555532 24589999999999988766433 33455788
Q ss_pred ccEEEecCCCC
Q 001704 844 LTHVSLNGCGN 854 (1024)
Q Consensus 844 L~~L~l~~c~~ 854 (1024)
|..|+|++|..
T Consensus 300 L~kLnLngN~l 310 (382)
T KOG1909|consen 300 LEKLNLNGNRL 310 (382)
T ss_pred hHHhcCCcccc
Confidence 99999999875
No 27
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=98.90 E-value=3.9e-10 Score=133.79 Aligned_cols=68 Identities=40% Similarity=0.704 Sum_probs=40.2
Q ss_pred HhcCCCccEEEEeCCCCCChHHHHHHHhcCCCCCEEEecCCCcCChHHHHHHHHhCCcccEEeccCCC
Q 001704 396 VLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCP 463 (1024)
Q Consensus 396 ~~~~~~L~~L~L~~~~~i~~~~l~~~~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~ 463 (1024)
...+++|+.|+++++..++|.++..+...|++|++|.+.+|..+++.++..++..|++|++|++++|.
T Consensus 239 ~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 239 LSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH 306 (482)
T ss_pred hhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence 44455666666666544566566555555666666665555555666666666666666666665554
No 28
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.88 E-value=6.4e-11 Score=109.70 Aligned_cols=135 Identities=21% Similarity=0.202 Sum_probs=63.3
Q ss_pred ccCCCCccccccccccceEEeeecccccCccccCCCcccEEecccCCCCchhhHhhhhhcCCCccEEEeccCCCCCchhh
Q 001704 680 LGICPKLSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGL 759 (1024)
Q Consensus 680 l~~~~~L~~L~l~~n~l~~l~l~~~~~l~~~~~~~~~L~~L~L~~~~~l~d~~l~~~~~~~~~L~~L~L~~~~~~~~~~~ 759 (1024)
|..+.+|+.|.+.+|.+ ..+|..++.++.|+.|+++.|. +. .+|..++++|.|+.|++..|..-....+
T Consensus 52 ia~l~nlevln~~nnqi--------e~lp~~issl~klr~lnvgmnr-l~--~lprgfgs~p~levldltynnl~e~~lp 120 (264)
T KOG0617|consen 52 IAELKNLEVLNLSNNQI--------EELPTSISSLPKLRILNVGMNR-LN--ILPRGFGSFPALEVLDLTYNNLNENSLP 120 (264)
T ss_pred HHHhhhhhhhhcccchh--------hhcChhhhhchhhhheecchhh-hh--cCccccCCCchhhhhhccccccccccCC
Confidence 44445555555555554 4445555555555555555442 21 2444445555555555555443333333
Q ss_pred hhhccCCCCCEEecCCCccCCchhhhhcCCCCcEEEecCCCCcchhhhHhhhhcCCCCCCcEEeCCCCccc
Q 001704 760 YSLRSLQNLTMLDLSYTFLTNLEPVFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLC 830 (1024)
Q Consensus 760 ~~l~~l~~L~~L~Ls~n~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~l~~L~~L~l~~n~l~ 830 (1024)
..|..+..|+-|.++.|.+.-+|+.++.+++|+.|.+.+|..++ -+..+ +.+..|++|.+.+|.++
T Consensus 121 gnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~--lpkei---g~lt~lrelhiqgnrl~ 186 (264)
T KOG0617|consen 121 GNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLS--LPKEI---GDLTRLRELHIQGNRLT 186 (264)
T ss_pred cchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhh--CcHHH---HHHHHHHHHhcccceee
Confidence 44444445555555555555555555555555555555544222 11122 34445555555555443
No 29
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.83 E-value=1.9e-09 Score=81.25 Aligned_cols=46 Identities=39% Similarity=0.803 Sum_probs=39.9
Q ss_pred hccCcHHHHHHHHhcCCHHHHHHHHHHhHHHHHhhcCCCccccccc
Q 001704 224 RMDLTDDLLHMVFSFLDYVDLCRAAIVCRQWRAASAHEDFWRCLNF 269 (1024)
Q Consensus 224 ~~~LP~ell~~If~~L~~~dl~~~~~Vcr~W~~~~~~~~l~~~l~l 269 (1024)
|..||+|++.+||+||+..|+.++++|||+|+.++.++.+|+++.+
T Consensus 1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~~lW~~~~~ 46 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDNSLWRRLCL 46 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCCCHHHHHC-
T ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCChhhhhhhcc
Confidence 3569999999999999999999999999999999998899988754
No 30
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.82 E-value=1e-10 Score=108.32 Aligned_cols=151 Identities=21% Similarity=0.211 Sum_probs=68.6
Q ss_pred CCCccccccccccceEEeeecccccCccccCCCcccEEecccCCCCchhhHhhhhhcCCCccEEEeccCCCCCchhhhhh
Q 001704 683 CPKLSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSL 762 (1024)
Q Consensus 683 ~~~L~~L~l~~n~l~~l~l~~~~~l~~~~~~~~~L~~L~L~~~~~l~d~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~l 762 (1024)
+.+++.|.+++|++ ..+|..+..+.+|+.|++.+| +++ .+|..+++++.|+.|++.-|..... +..|
T Consensus 32 ~s~ITrLtLSHNKl--------~~vppnia~l~nlevln~~nn-qie--~lp~~issl~klr~lnvgmnrl~~l--prgf 98 (264)
T KOG0617|consen 32 MSNITRLTLSHNKL--------TVVPPNIAELKNLEVLNLSNN-QIE--ELPTSISSLPKLRILNVGMNRLNIL--PRGF 98 (264)
T ss_pred hhhhhhhhcccCce--------eecCCcHHHhhhhhhhhcccc-hhh--hcChhhhhchhhhheecchhhhhcC--cccc
Confidence 33444444444444 334444444555555555544 342 2444444555555555544432221 3444
Q ss_pred ccCCCCCEEecCCCccCC--chhhhhcCCCCcEEEecCCCCcchhhhHhhhhcCCCCCCcEEeCCCCccchHHHHHHHhh
Q 001704 763 RSLQNLTMLDLSYTFLTN--LEPVFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELLAY 840 (1024)
Q Consensus 763 ~~l~~L~~L~Ls~n~l~~--l~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~ 840 (1024)
+.+|.|+.||+.+|.+.. +|..|..+..|+-|.+++|. ..-. +..+ +++++|+.|.+..|.+. .+|..++.
T Consensus 99 gs~p~levldltynnl~e~~lpgnff~m~tlralyl~dnd-fe~l-p~dv---g~lt~lqil~lrdndll--~lpkeig~ 171 (264)
T KOG0617|consen 99 GSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDND-FEIL-PPDV---GKLTNLQILSLRDNDLL--SLPKEIGD 171 (264)
T ss_pred CCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCC-cccC-Chhh---hhhcceeEEeeccCchh--hCcHHHHH
Confidence 455555555555554442 44444444455555555544 2211 1222 44555555555555443 34444444
Q ss_pred CCcccEEEecCCC
Q 001704 841 CTHLTHVSLNGCG 853 (1024)
Q Consensus 841 ~~~L~~L~l~~c~ 853 (1024)
+++|++|.+.||.
T Consensus 172 lt~lrelhiqgnr 184 (264)
T KOG0617|consen 172 LTRLRELHIQGNR 184 (264)
T ss_pred HHHHHHHhcccce
Confidence 5555555555443
No 31
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.80 E-value=3.2e-09 Score=113.19 Aligned_cols=82 Identities=23% Similarity=0.148 Sum_probs=42.5
Q ss_pred ccccceeccCCCCccccccccccccCCccEEEecCc--CCcchhh-------hcccccceeecccCCC--Cceee--ccC
Q 001704 894 RLLQNLNCVGCPNIRKVFIPPQARCFHLSSLNLSLS--ANLKEVD-------VACFNLCFLNLSNCCS--LETLK--LDC 960 (1024)
Q Consensus 894 ~~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~l~~~--~~l~~~~-------~~~~~L~~L~l~~c~~--L~~l~--~~~ 960 (1024)
+.|+.|++.+.+.+..-..+..+.++.|..|+++.+ +++...+ ..+++|++|++..++. ...+. ..+
T Consensus 246 ~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l 325 (505)
T KOG3207|consen 246 QTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTL 325 (505)
T ss_pred hHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhcc
Confidence 344444444443333323334555555555555542 1121111 1567788887777764 22222 246
Q ss_pred CccceEEeccccCCh
Q 001704 961 PKLTSLFLQSCNIDE 975 (1024)
Q Consensus 961 ~~L~~L~l~~~~i~~ 975 (1024)
++|+.|.+-.+.++.
T Consensus 326 ~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 326 ENLKHLRITLNYLNK 340 (505)
T ss_pred chhhhhhcccccccc
Confidence 788888877777543
No 32
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=3.5e-09 Score=112.86 Aligned_cols=206 Identities=21% Similarity=0.228 Sum_probs=130.6
Q ss_pred hcCCCccEEEEeCCCCCChHHHHHHHhcCCCCCEEEecCCCcCChHHHHHHHHhCCcccEEeccCCCCCCcc----ccCC
Q 001704 397 LNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCPNISLE----SVRL 472 (1024)
Q Consensus 397 ~~~~~L~~L~L~~~~~i~~~~l~~~~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~~~l~~~----~~~~ 472 (1024)
.++.+|+...|.++ .+.+.+.......|++++.|+|+.|-.-.-..+..++..+|+|+.|+++.|....+. -..+
T Consensus 118 sn~kkL~~IsLdn~-~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 118 SNLKKLREISLDNY-RVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred hhHHhhhheeecCc-cccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence 45666777777776 355544445667788888888888864456677788888888888888887622211 2257
Q ss_pred CCccEEEecCCCCCChhHHHhhh-cCCCccEEEecCCCCCcccccc---CCcCceEeeccccccccccccccccccc---
Q 001704 473 PMLTVLQLHSCEGITSASMAAIS-HSYMLEVLELDNCNLLTSVSLE---LPRLQNIRLVHCRKFADLNLRAMMLSSI--- 545 (1024)
Q Consensus 473 ~~L~~L~L~~~~~l~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~---~~~L~~L~l~~c~~L~~l~l~~~~l~~l--- 545 (1024)
++|+.|.|++| +++...+..+. .+++|+.|++..|..+...... +..|+. |++++|.+.+.
T Consensus 197 ~~lK~L~l~~C-Gls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~-----------LdLs~N~li~~~~~ 264 (505)
T KOG3207|consen 197 SHLKQLVLNSC-GLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQE-----------LDLSNNNLIDFDQG 264 (505)
T ss_pred hhhheEEeccC-CCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhh-----------ccccCCcccccccc
Confidence 88999999998 66655555444 4899999999988533221111 233333 44444444332
Q ss_pred -ccccccccceecccccccccccccchhhHHHHHHhcCcccEEeccCCcCchhhhhhhhcCCCCCCCccEEeccC
Q 001704 546 -MVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDN 619 (1024)
Q Consensus 546 -~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~L~~L~Ls~c~~l~~~~~~~l~~~~~~~~L~~L~l~~ 619 (1024)
..+.++.|+.|+++.+.+..+.....+.+... ..+++|++|++.. +.+.+.- .+..+...++|+.|.+..
T Consensus 265 ~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt-~~f~kL~~L~i~~-N~I~~w~--sl~~l~~l~nlk~l~~~~ 335 (505)
T KOG3207|consen 265 YKVGTLPGLNQLNLSSTGIASIAEPDVESLDKT-HTFPKLEYLNISE-NNIRDWR--SLNHLRTLENLKHLRITL 335 (505)
T ss_pred cccccccchhhhhccccCcchhcCCCccchhhh-cccccceeeeccc-Ccccccc--ccchhhccchhhhhhccc
Confidence 46678888888888888777765554444332 2678888888888 4654321 222224556666665543
No 33
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.79 E-value=6.6e-09 Score=101.83 Aligned_cols=132 Identities=22% Similarity=0.200 Sum_probs=56.7
Q ss_pred CCCcccEEecccCCCCchhhHhhhhhcCCCccEEEeccCCCCCchhhhhhccCCCCCEEecCCCccCCchhhh-hcCCCC
Q 001704 713 NCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLEPVF-ESCLQL 791 (1024)
Q Consensus 713 ~~~~L~~L~L~~~~~l~d~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~l~~~~-~~~~~L 791 (1024)
++..+++|+|++| .++. +...-..+.+|+.|++++|.... +..+..++.|++|++++|+++.+...+ ..+++|
T Consensus 17 n~~~~~~L~L~~n-~I~~--Ie~L~~~l~~L~~L~Ls~N~I~~---l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L 90 (175)
T PF14580_consen 17 NPVKLRELNLRGN-QIST--IENLGATLDKLEVLDLSNNQITK---LEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNL 90 (175)
T ss_dssp ----------------------S--TT-TT--EEE-TTS--S-----TT----TT--EEE--SS---S-CHHHHHH-TT-
T ss_pred ccccccccccccc-cccc--ccchhhhhcCCCEEECCCCCCcc---ccCccChhhhhhcccCCCCCCccccchHHhCCcC
Confidence 4556778888877 4542 33222256788888888887554 466778899999999999999986644 579999
Q ss_pred cEEEecCCCCcchhhhHhhhhcCCCCCCcEEeCCCCccchH--HHHHHHhhCCcccEEEecCCC
Q 001704 792 KVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQS--AIEELLAYCTHLTHVSLNGCG 853 (1024)
Q Consensus 792 ~~L~l~~c~~l~~~~~~~l~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~~~~L~~L~l~~c~ 853 (1024)
++|++++|. |.+. ..+..+..++.|+.|++.+|+++.. .-...+..+|+|+.||-....
T Consensus 91 ~~L~L~~N~-I~~l--~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V~ 151 (175)
T PF14580_consen 91 QELYLSNNK-ISDL--NELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDVT 151 (175)
T ss_dssp -EEE-TTS----SC--CCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEETT
T ss_pred CEEECcCCc-CCCh--HHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEEcc
Confidence 999999987 7653 2344457899999999999998754 344566789999999876543
No 34
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=98.74 E-value=2e-08 Score=119.21 Aligned_cols=251 Identities=24% Similarity=0.412 Sum_probs=155.6
Q ss_pred HhcCCCCCEEEccCc-ccchH-HHHhhcCCCCCCEEEecCC-CCCCC----cccccccCCcccEEEecccccchhcccCC
Q 001704 308 VSLLRNLEALTLGRG-QLGDA-FFHALADCSMLKSLNVNDA-TLGNG----VQEIPINHDQLRRLEITKCRVMRVSIRCP 380 (1024)
Q Consensus 308 l~~l~~L~~L~L~~~-~i~~~-~~~~l~~~~~L~~L~L~~~-~l~~~----l~~~~~~~~~L~~L~L~~~~~~~~~~~~~ 380 (1024)
...+++|+.|.+..+ .+.+. .......+++|+.|+++.+ ..... .......+.+|++|+++.+..
T Consensus 184 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~-------- 255 (482)
T KOG1947|consen 184 LSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGL-------- 255 (482)
T ss_pred HhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhc--------
Confidence 334677777777665 44433 2334446777777777652 11100 112233344455555544431
Q ss_pred CCceecccCccHHHHHhcCCCccEEEEeCCCCCChHHHHHHHhcCCCCCEEEecCCCcCChHHHHHHHHhCCcccEEecc
Q 001704 381 QLEHLSLKRSNMAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSS 460 (1024)
Q Consensus 381 ~L~~L~L~~~~l~~~~~~~~~L~~L~L~~~~~i~~~~l~~~~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~ 460 (1024)
+++..+..+...|++|++|.+.+|..+++.++..+...|++|++|+|++|..+++.++..+..+|++|+.|.+.
T Consensus 256 ------isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~ 329 (482)
T KOG1947|consen 256 ------VTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLL 329 (482)
T ss_pred ------cCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhh
Confidence 23334556666799999999999987999999999999999999999999999999999999999999998776
Q ss_pred CCCCCCccccCCCCccEEEecCCCCCC-hhH-HHhhhcCCCccEEEecCCCCCccccccCCcCceEeecccccccccccc
Q 001704 461 YCPNISLESVRLPMLTVLQLHSCEGIT-SAS-MAAISHSYMLEVLELDNCNLLTSVSLELPRLQNIRLVHCRKFADLNLR 538 (1024)
Q Consensus 461 ~~~~l~~~~~~~~~L~~L~L~~~~~l~-~~~-~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~l~ 538 (1024)
.... ++.++.+.+.++.... +.. ...+..+++++.+.+..+. ...... .
T Consensus 330 ~~~~-------c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~-~~~~~~------~--------------- 380 (482)
T KOG1947|consen 330 SLNG-------CPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCG-ISDLGL------E--------------- 380 (482)
T ss_pred hcCC-------CccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhh-ccCcch------H---------------
Confidence 5432 5566666666553333 122 2223345666665555554 222110 1
Q ss_pred cccccccccccccccceecccccccccccccchhhHHHHHHhcCcccEEeccCCcCchhhhhhhhcCCCCCCCccEEecc
Q 001704 539 AMMLSSIMVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLD 618 (1024)
Q Consensus 539 ~~~l~~l~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~L~~L~Ls~c~~l~~~~~~~l~~~~~~~~L~~L~l~ 618 (1024)
..+.+|+.|+ .. +......+..++.|+++.|..+++....... ..+.+++.+++.
T Consensus 381 ------~~l~gc~~l~-~~----------------l~~~~~~~~~l~~L~l~~~~~~t~~~l~~~~--~~~~~~~~l~~~ 435 (482)
T KOG1947|consen 381 ------LSLRGCPNLT-ES----------------LELRLCRSDSLRVLNLSDCRLVTDKGLRCLA--DSCSNLKDLDLS 435 (482)
T ss_pred ------HHhcCCcccc-hH----------------HHHHhccCCccceEecccCccccccchHHHh--hhhhccccCCcc
Confidence 1245555552 11 1111113344888888888888887766653 127788888888
Q ss_pred CCCCCcee
Q 001704 619 NCEGLTVV 626 (1024)
Q Consensus 619 ~c~~l~~l 626 (1024)
+|..++..
T Consensus 436 ~~~~~~~~ 443 (482)
T KOG1947|consen 436 GCRVITLK 443 (482)
T ss_pred Ccccccch
Confidence 88876654
No 35
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.71 E-value=1e-08 Score=103.68 Aligned_cols=132 Identities=24% Similarity=0.200 Sum_probs=99.9
Q ss_pred cCCCcccEEecccCCCCchhhHhhhhhcCCCccEEEeccCCCCCchhhhhhccCCCCCEEecCCCccCCchhhhhcCCCC
Q 001704 712 INCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLEPVFESCLQL 791 (1024)
Q Consensus 712 ~~~~~L~~L~L~~~~~l~d~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~l~~~~~~~~~L 791 (1024)
..-+.|+++|+++| .++ .+...+.-.|.++.|+++.|.... ...+..+++|+.||+|+|.++.+...-..+.++
T Consensus 281 dTWq~LtelDLS~N-~I~--~iDESvKL~Pkir~L~lS~N~i~~---v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNI 354 (490)
T KOG1259|consen 281 DTWQELTELDLSGN-LIT--QIDESVKLAPKLRRLILSQNRIRT---VQNLAELPQLQLLDLSGNLLAECVGWHLKLGNI 354 (490)
T ss_pred chHhhhhhcccccc-chh--hhhhhhhhccceeEEeccccceee---ehhhhhcccceEeecccchhHhhhhhHhhhcCE
Confidence 34467888888887 454 355555667888889988887544 356788889999999999888776656678889
Q ss_pred cEEEecCCCCcchhhhHhhhhcCCCCCCcEEeCCCCccchHHHHHHHhhCCcccEEEecCCCCc
Q 001704 792 KVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELLAYCTHLTHVSLNGCGNM 855 (1024)
Q Consensus 792 ~~L~l~~c~~l~~~~~~~l~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l~~c~~l 855 (1024)
+.|.++.|. |. .+..+.++-+|..||+++|+|.+..-...++.+|-|+.|.+.+||.-
T Consensus 355 KtL~La~N~-iE-----~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 355 KTLKLAQNK-IE-----TLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred eeeehhhhh-Hh-----hhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence 999999876 43 33344778889999999998866555566788999999999998864
No 36
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.59 E-value=4.8e-08 Score=95.81 Aligned_cols=132 Identities=23% Similarity=0.225 Sum_probs=52.5
Q ss_pred ccCCCCccccccccccceEEeeecccccCccccCCCcccEEecccCCCCchhhHhhhhhcCCCccEEEeccCCCCCchhh
Q 001704 680 LGICPKLSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGL 759 (1024)
Q Consensus 680 l~~~~~L~~L~l~~n~l~~l~l~~~~~l~~~~~~~~~L~~L~L~~~~~l~d~~l~~~~~~~~~L~~L~L~~~~~~~~~~~ 759 (1024)
+.++.+++.|++.+|.++. +......+.+|+.|++++| .+++ +. .+..++.|++|++++|...+ .+
T Consensus 15 ~~n~~~~~~L~L~~n~I~~--------Ie~L~~~l~~L~~L~Ls~N-~I~~--l~-~l~~L~~L~~L~L~~N~I~~-i~- 80 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQIST--------IENLGATLDKLEVLDLSNN-QITK--LE-GLPGLPRLKTLDLSNNRISS-IS- 80 (175)
T ss_dssp -----------------------------S--TT-TT--EEE-TTS---S----T-T----TT--EEE--SS---S--C-
T ss_pred ccccccccccccccccccc--------ccchhhhhcCCCEEECCCC-CCcc--cc-CccChhhhhhcccCCCCCCc-cc-
Confidence 4556677888888888742 2222224678999999998 5663 32 35678899999999998443 22
Q ss_pred hhh-ccCCCCCEEecCCCccCCchh--hhhcCCCCcEEEecCCCCcchhhhHhhhhcCCCCCCcEEeCCC
Q 001704 760 YSL-RSLQNLTMLDLSYTFLTNLEP--VFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSY 826 (1024)
Q Consensus 760 ~~l-~~l~~L~~L~Ls~n~l~~l~~--~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~l~~L~~L~l~~ 826 (1024)
..+ ..+++|++|++++|++..+.. .+..+++|++|++.+|+ ++...---...+..+|+|+.||-..
T Consensus 81 ~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NP-v~~~~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 81 EGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNP-VCEKKNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp HHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-G-GGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred cchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCc-ccchhhHHHHHHHHcChhheeCCEE
Confidence 233 468999999999999987543 67789999999999998 6654332223356789999998654
No 37
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.55 E-value=4.8e-08 Score=119.74 Aligned_cols=108 Identities=19% Similarity=0.224 Sum_probs=67.8
Q ss_pred CCCccEEEcCCCCCcccccccccccceeeccCCCCccccccccccceEEeeecccccCccccCCCcccEEecccCCCCch
Q 001704 651 CPILEKVCLDGCDHIESASFVPVALQSLNLGICPKLSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKD 730 (1024)
Q Consensus 651 ~~~L~~L~l~~c~~l~~~~~~p~~L~~L~l~~~~~L~~L~l~~n~l~~l~l~~~~~l~~~~~~~~~L~~L~L~~~~~l~d 730 (1024)
+|.|+.|++++|..+. .+|.. |+.+-+|++|++++..+ ..+|..+.++..|.+|++.++..+.
T Consensus 570 m~~LrVLDLs~~~~l~---~LP~~-----I~~Li~LryL~L~~t~I--------~~LP~~l~~Lk~L~~Lnl~~~~~l~- 632 (889)
T KOG4658|consen 570 LPLLRVLDLSGNSSLS---KLPSS-----IGELVHLRYLDLSDTGI--------SHLPSGLGNLKKLIYLNLEVTGRLE- 632 (889)
T ss_pred CcceEEEECCCCCccC---cCChH-----HhhhhhhhcccccCCCc--------cccchHHHHHHhhheeccccccccc-
Confidence 4444555555443332 23443 77777888888887776 6778888888888888888865443
Q ss_pred hhHhhhhhcCCCccEEEeccCC-CCCchhhhhhccCCCCCEEecCCC
Q 001704 731 DCLSATTTSCPLIESLILMSCQ-SIGPDGLYSLRSLQNLTMLDLSYT 776 (1024)
Q Consensus 731 ~~l~~~~~~~~~L~~L~L~~~~-~~~~~~~~~l~~l~~L~~L~Ls~n 776 (1024)
.++.....+++|++|.+..-. ..+......+.++.+|+.+.+...
T Consensus 633 -~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~ 678 (889)
T KOG4658|consen 633 -SIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITIS 678 (889)
T ss_pred -cccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecc
Confidence 345666668888888887654 222223345555555555555443
No 38
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.45 E-value=8.7e-07 Score=88.95 Aligned_cols=174 Identities=20% Similarity=0.294 Sum_probs=104.5
Q ss_pred CCCceEEEEcCCCchhHHHHHHHh----cCCCCCEEEccCc---ccchHH-------HHhhcCCCCCCEEEecCCCCCCC
Q 001704 286 YPNATEVNIYGAPAIHLLVMKAVS----LLRNLEALTLGRG---QLGDAF-------FHALADCSMLKSLNVNDATLGNG 351 (1024)
Q Consensus 286 ~~~l~~L~L~~~~~~~~~~~~~l~----~l~~L~~L~L~~~---~i~~~~-------~~~l~~~~~L~~L~L~~~~l~~~ 351 (1024)
...++.++|++ +.+.......++ .-++|+..+++.- ...+.+ ..++.+||+|+..+|++|.|+..
T Consensus 29 ~d~~~evdLSG-NtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~ 107 (388)
T COG5238 29 MDELVEVDLSG-NTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE 107 (388)
T ss_pred hcceeEEeccC-CcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence 67788899998 667666555554 4477777777642 223333 34566899999999999988865
Q ss_pred cc----cccccCCcccEEEecccccchhc-----------------ccCCCCceecccCccHH--------HHHhcCCCc
Q 001704 352 VQ----EIPINHDQLRRLEITKCRVMRVS-----------------IRCPQLEHLSLKRSNMA--------QAVLNCPLL 402 (1024)
Q Consensus 352 l~----~~~~~~~~L~~L~L~~~~~~~~~-----------------~~~~~L~~L~L~~~~l~--------~~~~~~~~L 402 (1024)
.| .++.....|++|.+++|.+..++ ..-|.|+......|.+. ..+....+|
T Consensus 108 ~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~l 187 (388)
T COG5238 108 FPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENL 187 (388)
T ss_pred cchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCc
Confidence 44 34556688999999998865433 24566666666665543 223333566
Q ss_pred cEEEEeCCCCCChHHHHHH----HhcCCCCCEEEecCCCcCChHHHHHHHHh---CCcccEEeccCC
Q 001704 403 HLLDIASCHKLSDAAIRLA----ATSCPQLESLDMSNCSCVSDESLREIALS---CANLRILNSSYC 462 (1024)
Q Consensus 403 ~~L~L~~~~~i~~~~l~~~----~~~~~~L~~L~L~~~~~l~~~~l~~l~~~---~~~L~~L~L~~~ 462 (1024)
+++.+..| .|...++..+ +..+.+|+.|+|.+|. ++-.+-..++.. .+.|+.|.+..|
T Consensus 188 k~vki~qN-gIrpegv~~L~~~gl~y~~~LevLDlqDNt-ft~~gS~~La~al~~W~~lrEL~lnDC 252 (388)
T COG5238 188 KEVKIQQN-GIRPEGVTMLAFLGLFYSHSLEVLDLQDNT-FTLEGSRYLADALCEWNLLRELRLNDC 252 (388)
T ss_pred eeEEeeec-CcCcchhHHHHHHHHHHhCcceeeeccccc-hhhhhHHHHHHHhcccchhhhccccch
Confidence 66666665 3554433322 2445666666666665 444443333322 223444444444
No 39
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.27 E-value=1e-06 Score=108.32 Aligned_cols=221 Identities=19% Similarity=0.229 Sum_probs=136.7
Q ss_pred cCCCCCEEEccCcc--cchHHHHhhcCCCCCCEEEecCCCCCCCcccccccCCcccEEEecccccchhcc---cCCCCce
Q 001704 310 LLRNLEALTLGRGQ--LGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSI---RCPQLEH 384 (1024)
Q Consensus 310 ~l~~L~~L~L~~~~--i~~~~~~~l~~~~~L~~L~L~~~~l~~~l~~~~~~~~~L~~L~L~~~~~~~~~~---~~~~L~~ 384 (1024)
.+++|++|-+..+. +.......|..++.|+.|+|++|.-.+.+|..++.+-+|++|++++..+..++. .+..|.+
T Consensus 543 ~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~ 622 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIY 622 (889)
T ss_pred CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhhe
Confidence 56688899888875 444455567789999999999988778899999999999999999999887775 5667888
Q ss_pred ecccCccHH----HHHhcCCCccEEEEeCCCCCChHHHHHHHhcCCCCCEEEecCCCcCChHHHHHHHHhCCccc----E
Q 001704 385 LSLKRSNMA----QAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLR----I 456 (1024)
Q Consensus 385 L~L~~~~l~----~~~~~~~~L~~L~L~~~~~i~~~~l~~~~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~----~ 456 (1024)
|++..+... .....+.+|++|.+..-..-.+......+.++.+|+.+...... ...+..+. ..+.|. .
T Consensus 623 Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s---~~~~e~l~-~~~~L~~~~~~ 698 (889)
T KOG4658|consen 623 LNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISS---VLLLEDLL-GMTRLRSLLQS 698 (889)
T ss_pred eccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecch---hHhHhhhh-hhHHHHHHhHh
Confidence 888876532 44556899999999875312233333444666777777665443 11222221 223332 3
Q ss_pred EeccCCC--CCCccccCCCCccEEEecCCCCCChhHHHhhh------cCCCccEEEecCCCCCccccc--cCCcCceEee
Q 001704 457 LNSSYCP--NISLESVRLPMLTVLQLHSCEGITSASMAAIS------HSYMLEVLELDNCNLLTSVSL--ELPRLQNIRL 526 (1024)
Q Consensus 457 L~L~~~~--~l~~~~~~~~~L~~L~L~~~~~l~~~~~~~l~------~~~~L~~L~l~~~~~~~~~~~--~~~~L~~L~l 526 (1024)
+.+.++. ........+.+|+.|.+.+|. +.+....... .++++..+.+.+|....+..+ ..|+|+.|.+
T Consensus 699 l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~-~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l 777 (889)
T KOG4658|consen 699 LSIEGCSKRTLISSLGSLGNLEELSILDCG-ISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSL 777 (889)
T ss_pred hhhcccccceeecccccccCcceEEEEcCC-CchhhcccccccchhhhHHHHHHHHhhccccccccchhhccCcccEEEE
Confidence 3332232 334455678888888888873 3222111110 022333333444443333321 2467777877
Q ss_pred ccccccccc
Q 001704 527 VHCRKFADL 535 (1024)
Q Consensus 527 ~~c~~L~~l 535 (1024)
..|+.+++.
T Consensus 778 ~~~~~~e~~ 786 (889)
T KOG4658|consen 778 VSCRLLEDI 786 (889)
T ss_pred ecccccccC
Confidence 777666553
No 40
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.23 E-value=5.3e-07 Score=91.49 Aligned_cols=84 Identities=26% Similarity=0.276 Sum_probs=63.7
Q ss_pred hccCCCCCEEecCCCccCCchhhhhcCCCCcEEEecCCCCcchhhhHhhhhcCCCCCCcEEeCCCCccchHHHHHHHhhC
Q 001704 762 LRSLQNLTMLDLSYTFLTNLEPVFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELLAYC 841 (1024)
Q Consensus 762 l~~l~~L~~L~Ls~n~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~~ 841 (1024)
+...+.|++||+|+|.++.+.....-.+.++.|+++.|. |..+.- + ..+++|+.||+++|.++ .+..+-..+
T Consensus 280 ~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~-i~~v~n--L---a~L~~L~~LDLS~N~Ls--~~~Gwh~KL 351 (490)
T KOG1259|consen 280 ADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNR-IRTVQN--L---AELPQLQLLDLSGNLLA--ECVGWHLKL 351 (490)
T ss_pred cchHhhhhhccccccchhhhhhhhhhccceeEEeccccc-eeeehh--h---hhcccceEeecccchhH--hhhhhHhhh
Confidence 344567888999999888888888888889999999887 554332 3 56888899999988876 355555667
Q ss_pred CcccEEEecCCC
Q 001704 842 THLTHVSLNGCG 853 (1024)
Q Consensus 842 ~~L~~L~l~~c~ 853 (1024)
.+.+.|.+.+|.
T Consensus 352 GNIKtL~La~N~ 363 (490)
T KOG1259|consen 352 GNIKTLKLAQNK 363 (490)
T ss_pred cCEeeeehhhhh
Confidence 788888888765
No 41
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.20 E-value=1.9e-06 Score=62.87 Aligned_cols=40 Identities=38% Similarity=0.615 Sum_probs=37.5
Q ss_pred CcHHHHHHHHhcCCHHHHHHHHHHhHHHHHhhcCCCcccc
Q 001704 227 LTDDLLHMVFSFLDYVDLCRAAIVCRQWRAASAHEDFWRC 266 (1024)
Q Consensus 227 LP~ell~~If~~L~~~dl~~~~~Vcr~W~~~~~~~~l~~~ 266 (1024)
||+|++.+||.+++..|+.+++.|||+|+.++.++.+|+.
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~~~~~ 40 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSHDFWFK 40 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcChhhhhc
Confidence 7999999999999999999999999999999998888853
No 42
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.11 E-value=2e-06 Score=69.02 Aligned_cols=60 Identities=38% Similarity=0.530 Sum_probs=36.4
Q ss_pred CCCCEEecCCCccCCchh-hhhcCCCCcEEEecCCCCcchhhhHhhhhcCCCCCCcEEeCCCCcc
Q 001704 766 QNLTMLDLSYTFLTNLEP-VFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTL 829 (1024)
Q Consensus 766 ~~L~~L~Ls~n~l~~l~~-~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~l~~L~~L~l~~n~l 829 (1024)
|+|+.|++++|++..+|. .|..+++|++|++++|. ++......+ ..+++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~-l~~i~~~~f---~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNN-LTSIPPDAF---SNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSS-ESEEETTTT---TTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCc-cCccCHHHH---cCCCCCCEEeCcCCcC
Confidence 356666666666666654 55666666666666655 555555544 5566666666666643
No 43
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.10 E-value=1.8e-07 Score=105.68 Aligned_cols=127 Identities=30% Similarity=0.343 Sum_probs=91.8
Q ss_pred cccEEecccCCCCchhhHhhhhhcCCCccEEEeccCCCCCchhhhhhccCCCCCEEecCCCccCCchh-hhhcCCCCcEE
Q 001704 716 LLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLEP-VFESCLQLKVL 794 (1024)
Q Consensus 716 ~L~~L~L~~~~~l~d~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~l~~-~~~~~~~L~~L 794 (1024)
.|...+.++| .+. .+...+.-++.|+.|+|++|++.. ...+..++.|++|||++|.+.-+|. ...+|. |..|
T Consensus 165 ~L~~a~fsyN-~L~--~mD~SLqll~ale~LnLshNk~~~---v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L 237 (1096)
T KOG1859|consen 165 KLATASFSYN-RLV--LMDESLQLLPALESLNLSHNKFTK---VDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLL 237 (1096)
T ss_pred hHhhhhcchh-hHH--hHHHHHHHHHHhhhhccchhhhhh---hHHHHhcccccccccccchhccccccchhhhh-heee
Confidence 3556666666 332 233334556778888888887655 4577888899999999999888877 444555 9999
Q ss_pred EecCCCCcchhhhHhhhhcCCCCCCcEEeCCCCccchHHHHHHHhhCCcccEEEecCCCCc
Q 001704 795 KLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELLAYCTHLTHVSLNGCGNM 855 (1024)
Q Consensus 795 ~l~~c~~l~~~~~~~l~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l~~c~~l 855 (1024)
++++|. ++ .+..+.++.+|+.||+++|-+.+..-...+..+..|+.|.|.|||..
T Consensus 238 ~lrnN~-l~-----tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 238 NLRNNA-LT-----TLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred eecccH-HH-----hhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 999876 44 33344778899999999988776555556677888889999998853
No 44
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.07 E-value=1.1e-06 Score=66.56 Aligned_cols=43 Identities=33% Similarity=0.698 Sum_probs=36.1
Q ss_pred hhccCcHHHHHHHHhcCCHHHHHHHHHHhHHHHHhhcCCCccc
Q 001704 223 IRMDLTDDLLHMVFSFLDYVDLCRAAIVCRQWRAASAHEDFWR 265 (1024)
Q Consensus 223 ~~~~LP~ell~~If~~L~~~dl~~~~~Vcr~W~~~~~~~~l~~ 265 (1024)
.+.+||+|++.+||++|+..|+.++++|||+|+.++.+..+|.
T Consensus 2 ~~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~~~~ 44 (48)
T PF00646_consen 2 PLSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSPRLWK 44 (48)
T ss_dssp HHHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHHH
T ss_pred CHHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCCccH
Confidence 3678999999999999999999999999999999998876664
No 45
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.04 E-value=3e-06 Score=101.46 Aligned_cols=138 Identities=25% Similarity=0.229 Sum_probs=94.5
Q ss_pred CCCcccEEecccCCCCchhhHhhhhhcCCCccEEEeccCCCCCchhhhhhccCCCCCEEecCCCccCCch--hhhhcCCC
Q 001704 713 NCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLE--PVFESCLQ 790 (1024)
Q Consensus 713 ~~~~L~~L~L~~~~~l~d~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~l~--~~~~~~~~ 790 (1024)
.+|+|++|.+.+= .+....+.....++|+|..||+++++... ..+++.+++|+.|.+.+=.+..-. ..+..+++
T Consensus 146 ~LPsL~sL~i~~~-~~~~~dF~~lc~sFpNL~sLDIS~TnI~n---l~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~ 221 (699)
T KOG3665|consen 146 MLPSLRSLVISGR-QFDNDDFSQLCASFPNLRSLDISGTNISN---LSGISRLKNLQVLSMRNLEFESYQDLIDLFNLKK 221 (699)
T ss_pred hCcccceEEecCc-eecchhHHHHhhccCccceeecCCCCccC---cHHHhccccHHHHhccCCCCCchhhHHHHhcccC
Confidence 4677777777763 45445566667777777777777766332 366777777777777766655422 24566788
Q ss_pred CcEEEecCCCCcchh--hhHhhhhcCCCCCCcEEeCCCCccchHHHHHHHhhCCcccEEEecCCCC
Q 001704 791 LKVLKLQACKYLTNT--SLESLYKKGSLPALQELDLSYGTLCQSAIEELLAYCTHLTHVSLNGCGN 854 (1024)
Q Consensus 791 L~~L~l~~c~~l~~~--~~~~l~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l~~c~~ 854 (1024)
|++||+|.-+...+. ....++....+|+|+.||.+++.+.+......+..-++|+.+.+-+|..
T Consensus 222 L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i~~~~~~~ 287 (699)
T KOG3665|consen 222 LRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQIAALDCLA 287 (699)
T ss_pred CCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhhhhhhhhhc
Confidence 888888865543333 2233333456899999999999998888888888888888887776544
No 46
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.00 E-value=1e-05 Score=82.47 Aligned_cols=186 Identities=19% Similarity=0.215 Sum_probs=115.2
Q ss_pred hcCCCCCEEEccCcccchH--HHHhhcCCCCCCEEEecCCCCCCCcccccccCCcccEEEecccccc-----hhcccCCC
Q 001704 309 SLLRNLEALTLGRGQLGDA--FFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVM-----RVSIRCPQ 381 (1024)
Q Consensus 309 ~~l~~L~~L~L~~~~i~~~--~~~~l~~~~~L~~L~L~~~~l~~~l~~~~~~~~~L~~L~L~~~~~~-----~~~~~~~~ 381 (1024)
..++.++.++|.+|.|++. +...+.++|.|+.|+|+.|.+...+...+....+|+.|-|.+..+. +....+|.
T Consensus 68 ~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~ 147 (418)
T KOG2982|consen 68 SSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPK 147 (418)
T ss_pred HHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchh
Confidence 4567888888888888754 5666778899999999988888776666666677888777765432 22234455
Q ss_pred CceecccCccHHHHHhcCCCccEEEEeCCCCCChHHHHHHHhcCCCCCEEEecCCCcCChHHHHHHHHhCCcccEEeccC
Q 001704 382 LEHLSLKRSNMAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSY 461 (1024)
Q Consensus 382 L~~L~L~~~~l~~~~~~~~~L~~L~L~~~~~i~~~~l~~~~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~ 461 (1024)
+++|.++.|++. .+++ .+..... .-+.+++|++..|...-......+...+|++..+-+..
T Consensus 148 vtelHmS~N~~r----------q~n~------Dd~c~e~---~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e 208 (418)
T KOG2982|consen 148 VTELHMSDNSLR----------QLNL------DDNCIED---WSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCE 208 (418)
T ss_pred hhhhhhccchhh----------hhcc------ccccccc---cchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeec
Confidence 555555444322 1111 1111111 12455666666665222233444555678888777777
Q ss_pred CC--CCCc--cccCCCCccEEEecCCCCCCh-hHHHhhhcCCCccEEEecCCCCCccc
Q 001704 462 CP--NISL--ESVRLPMLTVLQLHSCEGITS-ASMAAISHSYMLEVLELDNCNLLTSV 514 (1024)
Q Consensus 462 ~~--~l~~--~~~~~~~L~~L~L~~~~~l~~-~~~~~l~~~~~L~~L~l~~~~~~~~~ 514 (1024)
|+ .... ....+|.+-.|.|..+ ++.+ ..+.++..++.|..|.+..++....+
T Consensus 209 ~PlK~~s~ek~se~~p~~~~LnL~~~-~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l 265 (418)
T KOG2982|consen 209 GPLKTESSEKGSEPFPSLSCLNLGAN-NIDSWASVDALNGFPQLVDLRVSENPLSDPL 265 (418)
T ss_pred CcccchhhcccCCCCCcchhhhhccc-ccccHHHHHHHcCCchhheeeccCCcccccc
Confidence 75 1211 2234666777777775 4544 45677888999999999988876554
No 47
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.00 E-value=5e-07 Score=99.77 Aligned_cols=151 Identities=22% Similarity=0.181 Sum_probs=88.0
Q ss_pred CCCCccccccccccceEEeeecccccCccccCCCcccEEecccCCCCchhhHhhhhhcCCCccEEEeccCCCCCchhhhh
Q 001704 682 ICPKLSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYS 761 (1024)
Q Consensus 682 ~~~~L~~L~l~~n~l~~l~l~~~~~l~~~~~~~~~L~~L~L~~~~~l~d~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~ 761 (1024)
.|..|..+.+..|.+ ..+|..+.++..|+.|+|+.| +++ .+|..+..|| |+.|.+++|+.... +..
T Consensus 96 ~f~~Le~liLy~n~~--------r~ip~~i~~L~~lt~l~ls~N-qlS--~lp~~lC~lp-Lkvli~sNNkl~~l--p~~ 161 (722)
T KOG0532|consen 96 AFVSLESLILYHNCI--------RTIPEAICNLEALTFLDLSSN-QLS--HLPDGLCDLP-LKVLIVSNNKLTSL--PEE 161 (722)
T ss_pred HHHHHHHHHHHhccc--------eecchhhhhhhHHHHhhhccc-hhh--cCChhhhcCc-ceeEEEecCccccC--Ccc
Confidence 344455555555555 445566666666666666665 343 2333333332 66666666654332 455
Q ss_pred hccCCCCCEEecCCCccCCchhhhhcCCCCcEEEecCCCCcchhhhHhhhhcCCCCCCcEEeCCCCccchHHHHHHHhhC
Q 001704 762 LRSLQNLTMLDLSYTFLTNLEPVFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELLAYC 841 (1024)
Q Consensus 762 l~~l~~L~~L~Ls~n~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~~ 841 (1024)
++.++.|..|+.+.|.+..+|+.+..+.+|+.|++..|. +.+...+ + . .-.|..||++.|+++ .+|.-|..+
T Consensus 162 ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~-l~~lp~E-l---~-~LpLi~lDfScNkis--~iPv~fr~m 233 (722)
T KOG0532|consen 162 IGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNH-LEDLPEE-L---C-SLPLIRLDFSCNKIS--YLPVDFRKM 233 (722)
T ss_pred cccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhh-hhhCCHH-H---h-CCceeeeecccCcee--ecchhhhhh
Confidence 556666677777777777776666666777777776666 4333222 2 2 334666777777665 566666667
Q ss_pred CcccEEEecCCCC
Q 001704 842 THLTHVSLNGCGN 854 (1024)
Q Consensus 842 ~~L~~L~l~~c~~ 854 (1024)
++|+.|-|.+|+.
T Consensus 234 ~~Lq~l~LenNPL 246 (722)
T KOG0532|consen 234 RHLQVLQLENNPL 246 (722)
T ss_pred hhheeeeeccCCC
Confidence 7777777766663
No 48
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.94 E-value=1.2e-05 Score=96.50 Aligned_cols=135 Identities=25% Similarity=0.227 Sum_probs=104.5
Q ss_pred CcccEEecccCCCCchhhHhhhhhcCCCccEEEeccCCCCCchhhhhhccCCCCCEEecCCCccCCchhhhhcCCCCcEE
Q 001704 715 PLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLEPVFESCLQLKVL 794 (1024)
Q Consensus 715 ~~L~~L~L~~~~~l~d~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~l~~~~~~~~~L~~L 794 (1024)
.+|++|++++...+..+........+|+|+.|.+.+-.+..++-.....++|+|..||||++.++.+ ..++.+++|++|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L 200 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL 200 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHH
Confidence 6799999999877776777777788999999999998877766556677999999999999999988 778899999999
Q ss_pred EecCCCCcchhhhHhhhhcCCCCCCcEEeCCCCccchH--HHHHHH---hhCCcccEEEecCCC
Q 001704 795 KLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQS--AIEELL---AYCTHLTHVSLNGCG 853 (1024)
Q Consensus 795 ~l~~c~~l~~~~~~~l~~~~~l~~L~~L~l~~n~l~~~--~~~~~l---~~~~~L~~L~l~~c~ 853 (1024)
.+.+=. +. ....+..+-.+++|+.||+|....... .+...+ ..+|.|+.||.++..
T Consensus 201 ~mrnLe-~e--~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTd 261 (699)
T KOG3665|consen 201 SMRNLE-FE--SYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTD 261 (699)
T ss_pred hccCCC-CC--chhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcc
Confidence 999844 32 333343447899999999998644332 222223 348899999998743
No 49
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.89 E-value=1.3e-05 Score=81.78 Aligned_cols=221 Identities=18% Similarity=0.159 Sum_probs=135.5
Q ss_pred hhHHHHHHhcCcccEEeccCCcCchhhhhhhhcCCCCCCCccEEeccCCCCCceeccccCccceeecccCcccccccccC
Q 001704 572 ENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVVRFCSTSLVSLSLVGCRAITALELKC 651 (1024)
Q Consensus 572 ~~l~~l~~~~~~L~~L~Ls~c~~l~~~~~~~l~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~l~l~~~~~l~~l~~~~ 651 (1024)
.....++..+..+++++|.+ +.+++.. +.++.+..+|.|+.|+++.++ +.. -+..++...
T Consensus 61 gd~~~~~~~~~~v~elDL~~-N~iSdWs-eI~~ile~lP~l~~LNls~N~-L~s-----------------~I~~lp~p~ 120 (418)
T KOG2982|consen 61 GDVMLFGSSVTDVKELDLTG-NLISDWS-EIGAILEQLPALTTLNLSCNS-LSS-----------------DIKSLPLPL 120 (418)
T ss_pred hhHHHHHHHhhhhhhhhccc-chhccHH-HHHHHHhcCccceEeeccCCc-CCC-----------------ccccCcccc
Confidence 44556666788889999988 6777643 223334788899999987765 432 233333345
Q ss_pred CCccEEEcCCCCCcccccccccccceeeccCCCCccccccccccceEEeeec-ccccCccccCCCcccEEecccCCCCch
Q 001704 652 PILEKVCLDGCDHIESASFVPVALQSLNLGICPKLSTLGIEALHMVVLELKG-CGVLSDAYINCPLLTSLDASFCSQLKD 730 (1024)
Q Consensus 652 ~~L~~L~l~~c~~l~~~~~~p~~L~~L~l~~~~~L~~L~l~~n~l~~l~l~~-~~~l~~~~~~~~~L~~L~L~~~~~l~d 730 (1024)
.+|+.|.+.|- .+.. ..+++ .+.++|+++.+.++.|++.++.+.+ |.. + --+.+++|.+-.|....-
T Consensus 121 ~nl~~lVLNgT-~L~w-----~~~~s-~l~~lP~vtelHmS~N~~rq~n~Dd~c~e--~---~s~~v~tlh~~~c~~~~w 188 (418)
T KOG2982|consen 121 KNLRVLVLNGT-GLSW-----TQSTS-SLDDLPKVTELHMSDNSLRQLNLDDNCIE--D---WSTEVLTLHQLPCLEQLW 188 (418)
T ss_pred cceEEEEEcCC-CCCh-----hhhhh-hhhcchhhhhhhhccchhhhhcccccccc--c---cchhhhhhhcCCcHHHHH
Confidence 56666666662 1111 11111 1677888888888888766554432 111 1 123455666666642222
Q ss_pred hhHhhhhhcCCCccEEEeccCCCCCchhhhhhccCCCCCEEecCCCccCCchh--hhhcCCCCcEEEecCCCCcchhhhH
Q 001704 731 DCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLEP--VFESCLQLKVLKLQACKYLTNTSLE 808 (1024)
Q Consensus 731 ~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~l~~--~~~~~~~L~~L~l~~c~~l~~~~~~ 808 (1024)
........-+|++..+.+..|+.-+.....+...++.+..|+|+.+.+.+..+ .+..+++|+.|.+++++ +.+.-..
T Consensus 189 ~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~P-l~d~l~~ 267 (418)
T KOG2982|consen 189 LNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENP-LSDPLRG 267 (418)
T ss_pred HHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCc-ccccccC
Confidence 22333345688999999999987666666777788888899999998887544 67788889999998887 5433211
Q ss_pred hhh---hcCCCCCCcEEeCC
Q 001704 809 SLY---KKGSLPALQELDLS 825 (1024)
Q Consensus 809 ~l~---~~~~l~~L~~L~l~ 825 (1024)
... -++.+++++.|+=+
T Consensus 268 ~err~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 268 GERRFLLIARLTKVQVLNGS 287 (418)
T ss_pred CcceEEEEeeccceEEecCc
Confidence 110 12445566665544
No 50
>PLN03150 hypothetical protein; Provisional
Probab=97.87 E-value=2.6e-05 Score=94.04 Aligned_cols=107 Identities=22% Similarity=0.238 Sum_probs=77.2
Q ss_pred ccEEEeccCCCCCchhhhhhccCCCCCEEecCCCccCC-chhhhhcCCCCcEEEecCCCCcchhhhHhhhhcCCCCCCcE
Q 001704 743 IESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTN-LEPVFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQE 821 (1024)
Q Consensus 743 L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~-l~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~l~~L~~ 821 (1024)
++.|+|.+|... ...+..+..+++|+.|+|++|.+.+ +|..+..+++|+.|++++|. +++..+..+ +.+++|+.
T Consensus 420 v~~L~L~~n~L~-g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~-lsg~iP~~l---~~L~~L~~ 494 (623)
T PLN03150 420 IDGLGLDNQGLR-GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNS-FNGSIPESL---GQLTSLRI 494 (623)
T ss_pred EEEEECCCCCcc-ccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCC-CCCCCchHH---hcCCCCCE
Confidence 566666666533 2335667788888888888888874 66678888888888888877 777766666 77888888
Q ss_pred EeCCCCccchHHHHHHHhh-CCcccEEEecCCCCc
Q 001704 822 LDLSYGTLCQSAIEELLAY-CTHLTHVSLNGCGNM 855 (1024)
Q Consensus 822 L~l~~n~l~~~~~~~~l~~-~~~L~~L~l~~c~~l 855 (1024)
|++++|.+++. +|..+.. ..++..+++.+|+.+
T Consensus 495 L~Ls~N~l~g~-iP~~l~~~~~~~~~l~~~~N~~l 528 (623)
T PLN03150 495 LNLNGNSLSGR-VPAALGGRLLHRASFNFTDNAGL 528 (623)
T ss_pred EECcCCccccc-CChHHhhccccCceEEecCCccc
Confidence 88888888763 4444443 346677888887754
No 51
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.80 E-value=0.00014 Score=73.43 Aligned_cols=196 Identities=18% Similarity=0.288 Sum_probs=134.9
Q ss_pred cccccCCCCCCHHHHHHHHhhCCC---ceEEEEcCCC--chh-------HHHHHHHhcCCCCCEEEccCcccchHHH---
Q 001704 265 RCLNFENRKISVEQFEDVCQRYPN---ATEVNIYGAP--AIH-------LLVMKAVSLLRNLEALTLGRGQLGDAFF--- 329 (1024)
Q Consensus 265 ~~l~l~~~~~~~~~l~~l~~~~~~---l~~L~L~~~~--~~~-------~~~~~~l~~l~~L~~L~L~~~~i~~~~~--- 329 (1024)
..++++...+..++...+.....+ ++..+++... ... ..+.+++..||+|+..+|+.|.+...++
T Consensus 33 ~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e~L 112 (388)
T COG5238 33 VEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPEEL 112 (388)
T ss_pred eEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccchHH
Confidence 367888888888877776654444 4444444310 111 2355677899999999999998876544
Q ss_pred -HhhcCCCCCCEEEecCCCCCCC----cc---------cccccCCcccEEEecccccchhcc--------cCCCCceecc
Q 001704 330 -HALADCSMLKSLNVNDATLGNG----VQ---------EIPINHDQLRRLEITKCRVMRVSI--------RCPQLEHLSL 387 (1024)
Q Consensus 330 -~~l~~~~~L~~L~L~~~~l~~~----l~---------~~~~~~~~L~~L~L~~~~~~~~~~--------~~~~L~~L~L 387 (1024)
..++.-..|++|.+++|.++.. +. .-...-+.|+......|++...+. .-.+|+.+.+
T Consensus 113 ~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki 192 (388)
T COG5238 113 GDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLKEVKI 192 (388)
T ss_pred HHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEe
Confidence 4556789999999999987531 22 112345789999999888765431 2368999999
Q ss_pred cCccHH---------HHHhcCCCccEEEEeCCCCCChHH---HHHHHhcCCCCCEEEecCCCcCChHHHHHHHHh-----
Q 001704 388 KRSNMA---------QAVLNCPLLHLLDIASCHKLSDAA---IRLAATSCPQLESLDMSNCSCVSDESLREIALS----- 450 (1024)
Q Consensus 388 ~~~~l~---------~~~~~~~~L~~L~L~~~~~i~~~~---l~~~~~~~~~L~~L~L~~~~~l~~~~l~~l~~~----- 450 (1024)
..|+|. .-+..+.+|+.|+|+.|. ++-.+ +...+...+.|++|.+.+|- ++..+...+...
T Consensus 193 ~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNt-ft~~gS~~La~al~~W~~lrEL~lnDCl-ls~~G~~~v~~~f~e~~ 270 (388)
T COG5238 193 QQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNT-FTLEGSRYLADALCEWNLLRELRLNDCL-LSNEGVKSVLRRFNEKF 270 (388)
T ss_pred eecCcCcchhHHHHHHHHHHhCcceeeeccccc-hhhhhHHHHHHHhcccchhhhccccchh-hccccHHHHHHHhhhhc
Confidence 999875 225678999999999985 44332 33445566789999999997 777777766554
Q ss_pred CCcccEEeccCC
Q 001704 451 CANLRILNSSYC 462 (1024)
Q Consensus 451 ~~~L~~L~L~~~ 462 (1024)
.|+|..|...++
T Consensus 271 ~p~l~~L~~~Yn 282 (388)
T COG5238 271 VPNLMPLPGDYN 282 (388)
T ss_pred CCCccccccchh
Confidence 345555555554
No 52
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.75 E-value=1.5e-05 Score=64.00 Aligned_cols=60 Identities=22% Similarity=0.299 Sum_probs=43.3
Q ss_pred CCCCEEEccCcccchHHHHhhcCCCCCCEEEecCCCCCCCcccccccCCcccEEEecccc
Q 001704 312 RNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCR 371 (1024)
Q Consensus 312 ~~L~~L~L~~~~i~~~~~~~l~~~~~L~~L~L~~~~l~~~l~~~~~~~~~L~~L~L~~~~ 371 (1024)
++|++|++++|.+.......|..+++|++|++++|.+....+..+..+++|++|++++|+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 467777887777776666677777888888888777765555666777777777776664
No 53
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.66 E-value=3.8e-05 Score=88.31 Aligned_cols=135 Identities=29% Similarity=0.316 Sum_probs=66.6
Q ss_pred ccccCCCcccEEecccCCCCchhhHhhhhhcCCCccEEEeccCCCCCchhhhhhccCCCCCEEecCCCccCCchhhhhcC
Q 001704 709 DAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLEPVFESC 788 (1024)
Q Consensus 709 ~~~~~~~~L~~L~L~~~~~l~d~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~l~~~~~~~ 788 (1024)
..+..++.|+.|++++| .+++ ++......+.|+.|++++|....- +..+.....|++|.+++|....++..+..+
T Consensus 157 ~~~~~l~~L~~L~l~~N-~l~~--l~~~~~~~~~L~~L~ls~N~i~~l--~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~ 231 (394)
T COG4886 157 SPLRNLPNLKNLDLSFN-DLSD--LPKLLSNLSNLNNLDLSGNKISDL--PPEIELLSALEELDLSNNSIIELLSSLSNL 231 (394)
T ss_pred hhhhccccccccccCCc-hhhh--hhhhhhhhhhhhheeccCCccccC--chhhhhhhhhhhhhhcCCcceecchhhhhc
Confidence 34445555555555555 3432 233222455555555555543221 112223344666666666544455555556
Q ss_pred CCCcEEEecCCCCcchhhhHhhhhcCCCCCCcEEeCCCCccchHHHHHHHhhCCcccEEEecCCCCcc
Q 001704 789 LQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELLAYCTHLTHVSLNGCGNMH 856 (1024)
Q Consensus 789 ~~L~~L~l~~c~~l~~~~~~~l~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l~~c~~l~ 856 (1024)
.++..|.+.+|. +... +.. ++.+++|+.|++++|.++. ++. +....+|+.|+++++....
T Consensus 232 ~~l~~l~l~~n~-~~~~-~~~---~~~l~~l~~L~~s~n~i~~--i~~-~~~~~~l~~L~~s~n~~~~ 291 (394)
T COG4886 232 KNLSGLELSNNK-LEDL-PES---IGNLSNLETLDLSNNQISS--ISS-LGSLTNLRELDLSGNSLSN 291 (394)
T ss_pred ccccccccCCce-eeec-cch---hccccccceeccccccccc--ccc-ccccCccCEEeccCccccc
Confidence 666666655554 3321 111 1445556666666666653 222 5555666666666655443
No 54
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.64 E-value=3e-05 Score=89.14 Aligned_cols=150 Identities=31% Similarity=0.340 Sum_probs=109.8
Q ss_pred CCccEEEcCCCCCccccccccccccee--eccCCCCccccccccccceEEeeecccccCccccCCCcccEEecccCCCCc
Q 001704 652 PILEKVCLDGCDHIESASFVPVALQSL--NLGICPKLSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLK 729 (1024)
Q Consensus 652 ~~L~~L~l~~c~~l~~~~~~p~~L~~L--~l~~~~~L~~L~l~~n~l~~l~l~~~~~l~~~~~~~~~L~~L~L~~~~~l~ 729 (1024)
++|+.|++++.. ++.+ .+..+++|+.|+++.|.+ ..++......+.|+.|++++| +++
T Consensus 140 ~nL~~L~l~~N~-----------i~~l~~~~~~l~~L~~L~l~~N~l--------~~l~~~~~~~~~L~~L~ls~N-~i~ 199 (394)
T COG4886 140 SNLKELDLSDNK-----------IESLPSPLRNLPNLKNLDLSFNDL--------SDLPKLLSNLSNLNNLDLSGN-KIS 199 (394)
T ss_pred hhcccccccccc-----------hhhhhhhhhccccccccccCCchh--------hhhhhhhhhhhhhhheeccCC-ccc
Confidence 378888887743 2222 378888888888888887 455555557788888899887 565
Q ss_pred hhhHhhhhhcCCCccEEEeccCCCCCchhhhhhccCCCCCEEecCCCccCCchhhhhcCCCCcEEEecCCCCcchhhhHh
Q 001704 730 DDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLEPVFESCLQLKVLKLQACKYLTNTSLES 809 (1024)
Q Consensus 730 d~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~ 809 (1024)
+ ++........|++|.+.+|..+.. +..+..+.++..|.+.+|++..++..+..+++++.|++++|. ++....
T Consensus 200 ~--l~~~~~~~~~L~~l~~~~N~~~~~--~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~-i~~i~~-- 272 (394)
T COG4886 200 D--LPPEIELLSALEELDLSNNSIIEL--LSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQ-ISSISS-- 272 (394)
T ss_pred c--CchhhhhhhhhhhhhhcCCcceec--chhhhhcccccccccCCceeeeccchhccccccceecccccc-cccccc--
Confidence 3 444444555688888888863433 466777788888888888888777778888889999998877 665544
Q ss_pred hhhcCCCCCCcEEeCCCCccch
Q 001704 810 LYKKGSLPALQELDLSYGTLCQ 831 (1024)
Q Consensus 810 l~~~~~l~~L~~L~l~~n~l~~ 831 (1024)
+ +.+..|+.|+++++.++.
T Consensus 273 ~---~~~~~l~~L~~s~n~~~~ 291 (394)
T COG4886 273 L---GSLTNLRELDLSGNSLSN 291 (394)
T ss_pred c---cccCccCEEeccCccccc
Confidence 3 678888999998887764
No 55
>PLN03150 hypothetical protein; Provisional
Probab=97.56 E-value=8.1e-05 Score=89.85 Aligned_cols=85 Identities=14% Similarity=0.213 Sum_probs=73.6
Q ss_pred CceEEEEcCCCchhHHHHHHHhcCCCCCEEEccCcccchHHHHhhcCCCCCCEEEecCCCCCCCcccccccCCcccEEEe
Q 001704 288 NATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEI 367 (1024)
Q Consensus 288 ~l~~L~L~~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~~~~~~l~~~~~L~~L~L~~~~l~~~l~~~~~~~~~L~~L~L 367 (1024)
.++.|+|++ +.+...++..+..+++|+.|+|++|.+.+.++..++.+++|+.|+|++|.+.+.+|..+..+++|+.|+|
T Consensus 419 ~v~~L~L~~-n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~L 497 (623)
T PLN03150 419 FIDGLGLDN-QGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL 497 (623)
T ss_pred EEEEEECCC-CCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEEC
Confidence 477888888 5677777888899999999999999998888888999999999999999999888888888888888888
Q ss_pred cccccc
Q 001704 368 TKCRVM 373 (1024)
Q Consensus 368 ~~~~~~ 373 (1024)
++|.+.
T Consensus 498 s~N~l~ 503 (623)
T PLN03150 498 NGNSLS 503 (623)
T ss_pred cCCccc
Confidence 888764
No 56
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=97.48 E-value=1.7e-05 Score=88.01 Aligned_cols=126 Identities=21% Similarity=0.198 Sum_probs=66.0
Q ss_pred ccccccccccceEEeeecccccCccccCCCcccEEecccCCCCchhhHhhhhhcCCCccEEEeccCCCCCchhhhhhccC
Q 001704 686 LSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSL 765 (1024)
Q Consensus 686 L~~L~l~~n~l~~l~l~~~~~l~~~~~~~~~L~~L~L~~~~~l~d~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~l 765 (1024)
|+.|.+++|++ +.+|..++..+.|..||.+.| ++ ..++..+.++.+|+.|.++.|..... +..+..|
T Consensus 145 Lkvli~sNNkl--------~~lp~~ig~~~tl~~ld~s~n-ei--~slpsql~~l~slr~l~vrRn~l~~l--p~El~~L 211 (722)
T KOG0532|consen 145 LKVLIVSNNKL--------TSLPEEIGLLPTLAHLDVSKN-EI--QSLPSQLGYLTSLRDLNVRRNHLEDL--PEELCSL 211 (722)
T ss_pred ceeEEEecCcc--------ccCCcccccchhHHHhhhhhh-hh--hhchHHhhhHHHHHHHHHhhhhhhhC--CHHHhCC
Confidence 44445555554 445555555556666666655 23 23455555555666666665554332 3444433
Q ss_pred CCCCEEecCCCccCCchhhhhcCCCCcEEEecCCCCcchhhhHhhhhcCCCCCCcEEeCCCC
Q 001704 766 QNLTMLDLSYTFLTNLEPVFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYG 827 (1024)
Q Consensus 766 ~~L~~L~Ls~n~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~l~~L~~L~l~~n 827 (1024)
.|..||+|.|++..+|..|..+..|++|-|.+|+ +.. .+..++..+...--++|++.-|
T Consensus 212 -pLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNP-LqS-PPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 212 -PLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNP-LQS-PPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred -ceeeeecccCceeecchhhhhhhhheeeeeccCC-CCC-ChHHHHhccceeeeeeecchhc
Confidence 3556666666666666666666666666666665 442 2223333344444555555544
No 57
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.41 E-value=0.00067 Score=75.04 Aligned_cols=35 Identities=14% Similarity=0.139 Sum_probs=17.0
Q ss_pred CCCCCEEecCCCccCCchhhhhcCCCCcEEEecCCCCc
Q 001704 765 LQNLTMLDLSYTFLTNLEPVFESCLQLKVLKLQACKYL 802 (1024)
Q Consensus 765 l~~L~~L~Ls~n~l~~l~~~~~~~~~L~~L~l~~c~~l 802 (1024)
+.+++.|++++|.++.+|. -..+|+.|.+++|..+
T Consensus 51 ~~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nL 85 (426)
T PRK15386 51 ARASGRLYIKDCDIESLPV---LPNELTEITIENCNNL 85 (426)
T ss_pred hcCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCc
Confidence 3445555555555555441 1234555555555544
No 58
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.38 E-value=0.00056 Score=75.66 Aligned_cols=40 Identities=18% Similarity=0.357 Sum_probs=22.8
Q ss_pred hcCcccEEeccCCcCchhhhhhhhcCCCCCCCccEEeccCCCCCceec
Q 001704 580 QCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVVR 627 (1024)
Q Consensus 580 ~~~~L~~L~Ls~c~~l~~~~~~~l~~~~~~~~L~~L~l~~c~~l~~l~ 627 (1024)
.|.+++.|++++| .++... .-.++|++|.+.+|..++.++
T Consensus 50 ~~~~l~~L~Is~c-~L~sLP-------~LP~sLtsL~Lsnc~nLtsLP 89 (426)
T PRK15386 50 EARASGRLYIKDC-DIESLP-------VLPNELTEITIENCNNLTTLP 89 (426)
T ss_pred HhcCCCEEEeCCC-CCcccC-------CCCCCCcEEEccCCCCcccCC
Confidence 4567777777776 443221 112357777777776665543
No 59
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.35 E-value=0.0003 Score=51.63 Aligned_cols=38 Identities=32% Similarity=0.468 Sum_probs=27.5
Q ss_pred CCCCEEecCCCccCCchhhhhcCCCCcEEEecCCCCcch
Q 001704 766 QNLTMLDLSYTFLTNLEPVFESCLQLKVLKLQACKYLTN 804 (1024)
Q Consensus 766 ~~L~~L~Ls~n~l~~l~~~~~~~~~L~~L~l~~c~~l~~ 804 (1024)
++|++|++++|.++.+|+.+.++++|+.|++++|+ +++
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~-i~~ 38 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNP-ISD 38 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC-CSB
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCC-CCC
Confidence 46778888888888877777788888888888876 664
No 60
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.13 E-value=5e-05 Score=87.49 Aligned_cols=61 Identities=23% Similarity=0.255 Sum_probs=29.5
Q ss_pred cccccccceecccccccccccccchhhHHHHHHhcCcccEEeccCCcCchhhhhhhhcCCCCCCCccEEeccCCC
Q 001704 547 VSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCE 621 (1024)
Q Consensus 547 l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~L~~L~Ls~c~~l~~~~~~~l~~~~~~~~L~~L~l~~c~ 621 (1024)
+..+.+|+.+++..|.+.++... +. .+++|++|++++ +.|++.. .+..++.|+.|++.+|.
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~~----l~----~~~~L~~L~ls~-N~I~~i~-----~l~~l~~L~~L~l~~N~ 151 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIENL----LS----SLVNLQVLDLSF-NKITKLE-----GLSTLTLLKELNLSGNL 151 (414)
T ss_pred cccccceeeeeccccchhhcccc----hh----hhhcchheeccc-ccccccc-----chhhccchhhheeccCc
Confidence 45556666666666665544210 11 345566666665 3444321 11333445555555544
No 61
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.09 E-value=8.4e-05 Score=84.77 Aligned_cols=105 Identities=18% Similarity=0.234 Sum_probs=70.3
Q ss_pred HHHHHhcCCCCCEEEccCcccchHHHHhhcCCCCCCEEEecCCCCCCCcccccccCCcccEEEecccccchhc--ccCCC
Q 001704 304 VMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVS--IRCPQ 381 (1024)
Q Consensus 304 ~~~~l~~l~~L~~L~L~~~~i~~~~~~~l~~~~~L~~L~L~~~~l~~~l~~~~~~~~~L~~L~L~~~~~~~~~--~~~~~ 381 (1024)
+..++.-++.|+.|+|++|++++. ..+..|++|++|||++|.+.. +|.+-..-..|..|.|.+|.+..+. .++.+
T Consensus 179 mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~-vp~l~~~gc~L~~L~lrnN~l~tL~gie~Lks 255 (1096)
T KOG1859|consen 179 MDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRH-VPQLSMVGCKLQLLNLRNNALTTLRGIENLKS 255 (1096)
T ss_pred HHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhcc-ccccchhhhhheeeeecccHHHhhhhHHhhhh
Confidence 455666778888888888888774 377788888888888887653 3433333334777777777766554 26677
Q ss_pred CceecccCccHH-----HHHhcCCCccEEEEeCCC
Q 001704 382 LEHLSLKRSNMA-----QAVLNCPLLHLLDIASCH 411 (1024)
Q Consensus 382 L~~L~L~~~~l~-----~~~~~~~~L~~L~L~~~~ 411 (1024)
|+.||+++|-+. ..+..+..|+.|+|.+|+
T Consensus 256 L~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 256 LYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred hhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 777777776554 334555666677777664
No 62
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.01 E-value=0.00026 Score=72.00 Aligned_cols=114 Identities=24% Similarity=0.240 Sum_probs=83.3
Q ss_pred hhhhcCCCccEEEeccCCCCCchhhhhhccCCCCCEEecCCC--ccC-CchhhhhcCCCCcEEEecCCCCcchhhhHhhh
Q 001704 735 ATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYT--FLT-NLEPVFESCLQLKVLKLQACKYLTNTSLESLY 811 (1024)
Q Consensus 735 ~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~Ls~n--~l~-~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~ 811 (1024)
.....+..|+.|.+.++...+ ...+..+++|+.|.+|.| ++. +++.....+++|++|++++|+ |.. +..+.
T Consensus 37 gl~d~~~~le~ls~~n~gltt---~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nk-i~~--lstl~ 110 (260)
T KOG2739|consen 37 GLTDEFVELELLSVINVGLTT---LTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNK-IKD--LSTLR 110 (260)
T ss_pred cccccccchhhhhhhccceee---cccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCc-ccc--ccccc
Confidence 333445556667777666554 477788899999999999 444 366666677999999999988 774 55555
Q ss_pred hcCCCCCCcEEeCCCCccchH--HHHHHHhhCCcccEEEecCCCC
Q 001704 812 KKGSLPALQELDLSYGTLCQS--AIEELLAYCTHLTHVSLNGCGN 854 (1024)
Q Consensus 812 ~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~~~~L~~L~l~~c~~ 854 (1024)
.+..+.+|.+|++.+|..+.. .-...+.-+++|+.|+-.....
T Consensus 111 pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~~ 155 (260)
T KOG2739|consen 111 PLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVDG 155 (260)
T ss_pred hhhhhcchhhhhcccCCccccccHHHHHHHHhhhhccccccccCC
Confidence 557889999999999865442 4456777888999888776554
No 63
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.72 E-value=0.00035 Score=63.48 Aligned_cols=87 Identities=23% Similarity=0.294 Sum_probs=38.3
Q ss_pred hhhccCCCCCEEecCCCccCCchhhhh-cCCCCcEEEecCCCCcchhhhHhhhhcCCCCCCcEEeCCCCccchHHHHHHH
Q 001704 760 YSLRSLQNLTMLDLSYTFLTNLEPVFE-SCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELL 838 (1024)
Q Consensus 760 ~~l~~l~~L~~L~Ls~n~l~~l~~~~~-~~~~L~~L~l~~c~~l~~~~~~~l~~~~~l~~L~~L~l~~n~l~~~~~~~~l 838 (1024)
..+.....|+..+|++|.+...|+.|. .++-++.|++++|. |++.+.+ + ..++.|+.|+++.|++. ..++.+
T Consensus 47 y~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~ne-isdvPeE-~---Aam~aLr~lNl~~N~l~--~~p~vi 119 (177)
T KOG4579|consen 47 YMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNE-ISDVPEE-L---AAMPALRSLNLRFNPLN--AEPRVI 119 (177)
T ss_pred HHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhh-hhhchHH-H---hhhHHhhhcccccCccc--cchHHH
Confidence 333444444444555555544444332 23344555555444 4444333 2 34455555555555544 223333
Q ss_pred hhCCcccEEEecCCC
Q 001704 839 AYCTHLTHVSLNGCG 853 (1024)
Q Consensus 839 ~~~~~L~~L~l~~c~ 853 (1024)
..+.+|-.|+..++.
T Consensus 120 ~~L~~l~~Lds~~na 134 (177)
T KOG4579|consen 120 APLIKLDMLDSPENA 134 (177)
T ss_pred HHHHhHHHhcCCCCc
Confidence 334444444444443
No 64
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=96.70 E-value=0.00022 Score=82.13 Aligned_cols=106 Identities=24% Similarity=0.304 Sum_probs=67.3
Q ss_pred ccCCCCccccccccccceEEeeecccccCccccCCCcccEEecccCCCCchhhHhhhhhcCCCccEEEeccCCCCCchhh
Q 001704 680 LGICPKLSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGL 759 (1024)
Q Consensus 680 l~~~~~L~~L~l~~n~l~~l~l~~~~~l~~~~~~~~~L~~L~L~~~~~l~d~~l~~~~~~~~~L~~L~L~~~~~~~~~~~ 759 (1024)
+..+.+|+.+++..|.+. .+...+..+++|++|++++| .|++ +. .+..++.|+.|++.+|.... +
T Consensus 91 l~~~~~l~~l~l~~n~i~--------~i~~~l~~~~~L~~L~ls~N-~I~~--i~-~l~~l~~L~~L~l~~N~i~~---~ 155 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIE--------KIENLLSSLVNLQVLDLSFN-KITK--LE-GLSTLTLLKELNLSGNLISD---I 155 (414)
T ss_pred cccccceeeeeccccchh--------hcccchhhhhcchheecccc-cccc--cc-chhhccchhhheeccCcchh---c
Confidence 455666777777777663 23332555777788888876 5553 11 12345557777777777443 3
Q ss_pred hhhccCCCCCEEecCCCccCCchhh-hhcCCCCcEEEecCCC
Q 001704 760 YSLRSLQNLTMLDLSYTFLTNLEPV-FESCLQLKVLKLQACK 800 (1024)
Q Consensus 760 ~~l~~l~~L~~L~Ls~n~l~~l~~~-~~~~~~L~~L~l~~c~ 800 (1024)
..+..++.|+.+++++|++..+... ...+.+++.+.+.+|.
T Consensus 156 ~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~ 197 (414)
T KOG0531|consen 156 SGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNS 197 (414)
T ss_pred cCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCc
Confidence 4555577777777887777766553 4667777777777765
No 65
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.60 E-value=0.0016 Score=63.53 Aligned_cols=68 Identities=24% Similarity=0.372 Sum_probs=58.7
Q ss_pred HHHhcCCCccEEEEeCCCCCChHHHHHHHhcCCCCCEEEecCCCcCChHHHHHHHHhCCcccEEeccCC
Q 001704 394 QAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYC 462 (1024)
Q Consensus 394 ~~~~~~~~L~~L~L~~~~~i~~~~l~~~~~~~~~L~~L~L~~~~~l~~~~l~~l~~~~~~L~~L~L~~~ 462 (1024)
.-+..++.++.|.+.+|..+.|..+..+....++|+.|+|++|+.||+.++.-+. .+++|+.|.+.+-
T Consensus 119 e~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~-~lknLr~L~l~~l 186 (221)
T KOG3864|consen 119 EHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLL-KLKNLRRLHLYDL 186 (221)
T ss_pred HHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHH-HhhhhHHHHhcCc
Confidence 4467788899999999998999888888888899999999999999999999887 7888888887654
No 66
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.53 E-value=0.0029 Score=61.80 Aligned_cols=35 Identities=29% Similarity=0.355 Sum_probs=15.1
Q ss_pred CCCCEEecCCCccCCchh--hhhcCCCCcEEEecCCC
Q 001704 766 QNLTMLDLSYTFLTNLEP--VFESCLQLKVLKLQACK 800 (1024)
Q Consensus 766 ~~L~~L~Ls~n~l~~l~~--~~~~~~~L~~L~l~~c~ 800 (1024)
++|..|.+.+|.+..+.. -+..|++|++|.+-+|+
T Consensus 88 p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Np 124 (233)
T KOG1644|consen 88 PNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNP 124 (233)
T ss_pred cccceEEecCcchhhhhhcchhccCCccceeeecCCc
Confidence 444444444444443222 23344444444444444
No 67
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.50 E-value=0.0022 Score=62.56 Aligned_cols=94 Identities=21% Similarity=0.355 Sum_probs=44.3
Q ss_pred CCEEEccCcccchHHHHhhcCCCCCCEEEecCCCCCCCcccccccCCcccEEEecccccchhc-----ccCCCCceeccc
Q 001704 314 LEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVS-----IRCPQLEHLSLK 388 (1024)
Q Consensus 314 L~~L~L~~~~i~~~~~~~l~~~~~L~~L~L~~~~l~~~l~~~~~~~~~L~~L~L~~~~~~~~~-----~~~~~L~~L~L~ 388 (1024)
...++|+.|.+.. ...|..++.|..|.|++|.++..-|.+...+++|+.|.|++|.+..++ ..||+|++|.+-
T Consensus 44 ~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll 121 (233)
T KOG1644|consen 44 FDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLL 121 (233)
T ss_pred cceecccccchhh--cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeec
Confidence 3344555544332 223334455555555555555444444444455555555555544333 244555555555
Q ss_pred CccHHH-------HHhcCCCccEEEEeC
Q 001704 389 RSNMAQ-------AVLNCPLLHLLDIAS 409 (1024)
Q Consensus 389 ~~~l~~-------~~~~~~~L~~L~L~~ 409 (1024)
+|.+.. .+..+|+|+.|++.+
T Consensus 122 ~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 122 GNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred CCchhcccCceeEEEEecCcceEeehhh
Confidence 554441 233445555555444
No 68
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=96.33 E-value=0.0069 Score=44.47 Aligned_cols=39 Identities=28% Similarity=0.247 Sum_probs=22.9
Q ss_pred CccEEEeccCCCCCchhhhhhccCCCCCEEecCCCccCCch
Q 001704 742 LIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLE 782 (1024)
Q Consensus 742 ~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~l~ 782 (1024)
+|++|++++|... +. +..+.++++|+.|++++|.++.++
T Consensus 2 ~L~~L~l~~N~i~-~l-~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DL-PPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp T-SEEEETSSS-S-SH-GGHGTTCTTSSEEEETSSCCSBEG
T ss_pred cceEEEccCCCCc-cc-CchHhCCCCCCEEEecCCCCCCCc
Confidence 4666666666533 21 223677777777777777776554
No 69
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.26 E-value=0.0013 Score=59.93 Aligned_cols=110 Identities=15% Similarity=0.085 Sum_probs=79.6
Q ss_pred CcccEEecccCCCCchhhHhhhhhcCCCccEEEeccCCCCCchhhhhhc-cCCCCCEEecCCCccCCchhhhhcCCCCcE
Q 001704 715 PLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLR-SLQNLTMLDLSYTFLTNLEPVFESCLQLKV 793 (1024)
Q Consensus 715 ~~L~~L~L~~~~~l~d~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~-~l~~L~~L~Ls~n~l~~l~~~~~~~~~L~~ 793 (1024)
..+-.++|+.|+.+--....+.+.....|+..+|++|.+-.. +..+. +.+.++.|++++|.++.+|..+..++.|+.
T Consensus 27 kE~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~f--p~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~ 104 (177)
T KOG4579|consen 27 KELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKF--PKKFTIKFPTATTLNLANNEISDVPEELAAMPALRS 104 (177)
T ss_pred HHhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhC--CHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhh
Confidence 345667888885432333445566667788889999875543 34444 557899999999999999999999999999
Q ss_pred EEecCCCCcchhhhHhhhhcCCCCCCcEEeCCCCccch
Q 001704 794 LKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQ 831 (1024)
Q Consensus 794 L~l~~c~~l~~~~~~~l~~~~~l~~L~~L~l~~n~l~~ 831 (1024)
|+++.|+ +... ++.+ ..+.+|-.|+..+|.+-.
T Consensus 105 lNl~~N~-l~~~-p~vi---~~L~~l~~Lds~~na~~e 137 (177)
T KOG4579|consen 105 LNLRFNP-LNAE-PRVI---APLIKLDMLDSPENARAE 137 (177)
T ss_pred cccccCc-cccc-hHHH---HHHHhHHHhcCCCCcccc
Confidence 9999998 5533 3333 236778888888886643
No 70
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.24 E-value=0.0016 Score=63.57 Aligned_cols=66 Identities=29% Similarity=0.380 Sum_probs=58.3
Q ss_pred ccCCCcccEEecccCCCCchhhHhhhhhcCCCccEEEeccCCCCCchhhhhhccCCCCCEEecCCC
Q 001704 711 YINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYT 776 (1024)
Q Consensus 711 ~~~~~~L~~L~L~~~~~l~d~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~Ls~n 776 (1024)
+.+++.++.|.+.+|..+.|.++..+-.-.++|+.|+|++|+.|++.|+..+..+++|+.|.|.+=
T Consensus 121 L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l 186 (221)
T KOG3864|consen 121 LRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDL 186 (221)
T ss_pred HhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCc
Confidence 345788889999999999999999988888999999999999999999999999999998887653
No 71
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.13 E-value=0.0007 Score=68.90 Aligned_cols=102 Identities=24% Similarity=0.261 Sum_probs=53.2
Q ss_pred CcccEEecccCCCCchhhHhhhhhcCCCccEEEeccCCCCCchhhhhhccCCCCCEEecCCCccCCchh--hhhcCCCCc
Q 001704 715 PLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLEP--VFESCLQLK 792 (1024)
Q Consensus 715 ~~L~~L~L~~~~~l~d~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~l~~--~~~~~~~L~ 792 (1024)
.+.+.|+..+| .++|..+ ...++.|+.|.|+-|...+ +..+..+++|++|+|..|.|..+.+ .+.++++|+
T Consensus 19 ~~vkKLNcwg~-~L~DIsi---c~kMp~lEVLsLSvNkIss---L~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr 91 (388)
T KOG2123|consen 19 ENVKKLNCWGC-GLDDISI---CEKMPLLEVLSLSVNKISS---LAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLR 91 (388)
T ss_pred HHhhhhcccCC-CccHHHH---HHhcccceeEEeecccccc---chhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhh
Confidence 34555666665 4554222 3355666666666555332 3555566666666666666665544 456666666
Q ss_pred EEEecCCCCcchhhhHhhhh-cCCCCCCcEEe
Q 001704 793 VLKLQACKYLTNTSLESLYK-KGSLPALQELD 823 (1024)
Q Consensus 793 ~L~l~~c~~l~~~~~~~l~~-~~~l~~L~~L~ 823 (1024)
.|.|..|+.-...+...=.. +..+|+|+.||
T Consensus 92 ~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 92 TLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 66666665333222211100 23456666554
No 72
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=96.08 E-value=0.0046 Score=64.33 Aligned_cols=50 Identities=24% Similarity=0.615 Sum_probs=45.7
Q ss_pred chhhhccCc----HHHHHHHHhcCCHHHHHHHHHHhHHHHHhhcCCCccccccc
Q 001704 220 DLEIRMDLT----DDLLHMVFSFLDYVDLCRAAIVCRQWRAASAHEDFWRCLNF 269 (1024)
Q Consensus 220 ~~~~~~~LP----~ell~~If~~L~~~dl~~~~~Vcr~W~~~~~~~~l~~~l~l 269 (1024)
..|++..|| +++-+.||+||+..+++.|.+|||+|+.+..++.+|+.+--
T Consensus 71 qrDFi~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~l~dg~~WKkLie 124 (499)
T KOG0281|consen 71 QRDFITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRVLSDGMLWKKLIE 124 (499)
T ss_pred HHHHHHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHHhccchHHHHHHH
Confidence 448888999 99999999999999999999999999999999999987643
No 73
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=95.85 E-value=0.0049 Score=63.97 Aligned_cols=46 Identities=24% Similarity=0.498 Sum_probs=40.0
Q ss_pred hhhccCcHHHHHHHHhcC-----CHHHHHHHHHHhHHHHHhhcCCCccccc
Q 001704 222 EIRMDLTDDLLHMVFSFL-----DYVDLCRAAIVCRQWRAASAHEDFWRCL 267 (1024)
Q Consensus 222 ~~~~~LP~ell~~If~~L-----~~~dl~~~~~Vcr~W~~~~~~~~l~~~l 267 (1024)
+.+..|||||+..||... +.+++.++++|||.|+..+.++.+|+..
T Consensus 105 ~~~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~a 155 (366)
T KOG2997|consen 105 ISISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWRLA 155 (366)
T ss_pred hhhhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHHHH
Confidence 446889999999999854 5688999999999999999999999743
No 74
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.85 E-value=0.0051 Score=62.86 Aligned_cols=86 Identities=28% Similarity=0.234 Sum_probs=42.3
Q ss_pred CCCcccEEecccCCCCchhhHhhhhhcCCCccEEEeccCCCCCchhhhhhccCCCCCEEecCCCccCCchh----hhhcC
Q 001704 713 NCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLEP----VFESC 788 (1024)
Q Consensus 713 ~~~~L~~L~L~~~~~l~d~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~l~~----~~~~~ 788 (1024)
.+|+|+.|.++.|..--...+...+..+|+|++|++++|..-....+..+..+++|..|++..|..+.+-. .|.-+
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll 142 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLL 142 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHHHh
Confidence 45566666666652222234444455556666666666653222223344455555555555555444211 34444
Q ss_pred CCCcEEEecC
Q 001704 789 LQLKVLKLQA 798 (1024)
Q Consensus 789 ~~L~~L~l~~ 798 (1024)
++|++|+-..
T Consensus 143 ~~L~~LD~~d 152 (260)
T KOG2739|consen 143 PSLKYLDGCD 152 (260)
T ss_pred hhhccccccc
Confidence 5555554443
No 75
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.33 E-value=0.0013 Score=67.04 Aligned_cols=102 Identities=24% Similarity=0.358 Sum_probs=72.9
Q ss_pred CCCccEEEeccCCCCCchhhhhhccCCCCCEEecCCCccCCchhhhhcCCCCcEEEecCCCCcchhhhHhhhhcCCCCCC
Q 001704 740 CPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLEPVFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPAL 819 (1024)
Q Consensus 740 ~~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~l~~L 819 (1024)
+.+.++|+.-+|. +++ +.-..+++.|+.|.||-|+|+.+.+ +..|++|++|.|..|. |.+ +..++-+.++|+|
T Consensus 18 l~~vkKLNcwg~~-L~D--Isic~kMp~lEVLsLSvNkIssL~p-l~rCtrLkElYLRkN~-I~s--ldEL~YLknlpsL 90 (388)
T KOG2123|consen 18 LENVKKLNCWGCG-LDD--ISICEKMPLLEVLSLSVNKISSLAP-LQRCTRLKELYLRKNC-IES--LDELEYLKNLPSL 90 (388)
T ss_pred HHHhhhhcccCCC-ccH--HHHHHhcccceeEEeeccccccchh-HHHHHHHHHHHHHhcc-ccc--HHHHHHHhcCchh
Confidence 4567888888887 333 4566788889999999998888744 6678889999888877 664 3344345788888
Q ss_pred cEEeCCCCccchHH----HHHHHhhCCcccEEE
Q 001704 820 QELDLSYGTLCQSA----IEELLAYCTHLTHVS 848 (1024)
Q Consensus 820 ~~L~l~~n~l~~~~----~~~~l~~~~~L~~L~ 848 (1024)
+.|-|..|+=++.+ -...+..+|+|+.||
T Consensus 91 r~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 91 RTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 88888887654432 224566788888775
No 76
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.39 E-value=0.082 Score=49.60 Aligned_cols=81 Identities=16% Similarity=0.334 Sum_probs=30.0
Q ss_pred hhcCCCccEEEeccCCCCCchhhhhhccCCCCCEEecCCCccCCchh-hhhcCCCCcEEEecCCCCcchhhhHhhhhcCC
Q 001704 737 TTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLEP-VFESCLQLKVLKLQACKYLTNTSLESLYKKGS 815 (1024)
Q Consensus 737 ~~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~l~~-~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~ 815 (1024)
+.+++.|+.+.+.+. +...+...+..+++|+.+.+.. .+..++. .|..+++|+.+.+..+ ++......+ ..
T Consensus 31 F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~--~~~i~~~~f---~~ 102 (129)
T PF13306_consen 31 FSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN--ITEIGSSSF---SN 102 (129)
T ss_dssp TTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT---BEEHTTTT---TT
T ss_pred ccccccccccccccc--ccccceeeeecccccccccccc-cccccccccccccccccccccCcc--ccEEchhhh---cC
Confidence 344445555555442 2222234444554555555543 3332322 4445555665555432 333333332 33
Q ss_pred CCCCcEEeCCC
Q 001704 816 LPALQELDLSY 826 (1024)
Q Consensus 816 l~~L~~L~l~~ 826 (1024)
+ .|+.+.+..
T Consensus 103 ~-~l~~i~~~~ 112 (129)
T PF13306_consen 103 C-NLKEINIPS 112 (129)
T ss_dssp --T--EEE-TT
T ss_pred C-CceEEEECC
Confidence 4 555555543
No 77
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=93.82 E-value=0.0066 Score=70.11 Aligned_cols=90 Identities=31% Similarity=0.371 Sum_probs=49.0
Q ss_pred CCCcccEEecccCCCCchhhHhhh---hhcCCC-ccEEEeccCCCCCchhhhh----hccC-CCCCEEecCCCccCC---
Q 001704 713 NCPLLTSLDASFCSQLKDDCLSAT---TTSCPL-IESLILMSCQSIGPDGLYS----LRSL-QNLTMLDLSYTFLTN--- 780 (1024)
Q Consensus 713 ~~~~L~~L~L~~~~~l~d~~l~~~---~~~~~~-L~~L~L~~~~~~~~~~~~~----l~~l-~~L~~L~Ls~n~l~~--- 780 (1024)
...++++|.+.+| .+++...... +...+. +.+|++..|. +.+.+... +..+ ..++.++++.|.++.
T Consensus 202 ~~~~le~L~L~~~-~~t~~~c~~l~~~l~~~~~~~~el~l~~n~-l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~ 279 (478)
T KOG4308|consen 202 PLSSLETLKLSRC-GVTSSSCALLDEVLASGESLLRELDLASNK-LGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGV 279 (478)
T ss_pred ccccHHHHhhhhc-CcChHHHHHHHHHHhccchhhHHHHHHhcC-cchHHHHHHHHHhcccchhhhhhhhhcCCccccch
Confidence 3567888888887 5654333322 333444 5556666665 44433322 2233 455666666666663
Q ss_pred --chhhhhcCCCCcEEEecCCCCcchh
Q 001704 781 --LEPVFESCLQLKVLKLQACKYLTNT 805 (1024)
Q Consensus 781 --l~~~~~~~~~L~~L~l~~c~~l~~~ 805 (1024)
+...+..+++++++.+++|+ +.+.
T Consensus 280 ~~L~~~l~~~~~l~~l~l~~n~-l~~~ 305 (478)
T KOG4308|consen 280 RDLAEVLVSCRQLEELSLSNNP-LTDY 305 (478)
T ss_pred HHHHHHHhhhHHHHHhhcccCc-cccH
Confidence 34455556666666666655 4443
No 78
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=93.73 E-value=0.0053 Score=70.89 Aligned_cols=140 Identities=28% Similarity=0.321 Sum_probs=83.5
Q ss_pred CcccEEecccCCCCchhh---HhhhhhcCCCccEEEeccCCCCCchh---hhhhc----cCCCCCEEecCCCccCC----
Q 001704 715 PLLTSLDASFCSQLKDDC---LSATTTSCPLIESLILMSCQSIGPDG---LYSLR----SLQNLTMLDLSYTFLTN---- 780 (1024)
Q Consensus 715 ~~L~~L~L~~~~~l~d~~---l~~~~~~~~~L~~L~L~~~~~~~~~~---~~~l~----~l~~L~~L~Ls~n~l~~---- 780 (1024)
..|+.|++..| .+++.. +...+.....|+.++++.|..+.... ...+. ...++++|.+++|.++.
T Consensus 144 ~~l~~L~l~~c-~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~ 222 (478)
T KOG4308|consen 144 CLLQTLELVSC-SLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCA 222 (478)
T ss_pred HHHHHHHhhcc-cccccchHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHH
Confidence 45556666666 344433 22334446667777777776542211 12222 35677778888877763
Q ss_pred -chhhhhcCCC-CcEEEecCCCCcchhhhHhhhh-cCCC-CCCcEEeCCCCccchH---HHHHHHhhCCcccEEEecCCC
Q 001704 781 -LEPVFESCLQ-LKVLKLQACKYLTNTSLESLYK-KGSL-PALQELDLSYGTLCQS---AIEELLAYCTHLTHVSLNGCG 853 (1024)
Q Consensus 781 -l~~~~~~~~~-L~~L~l~~c~~l~~~~~~~l~~-~~~l-~~L~~L~l~~n~l~~~---~~~~~l~~~~~L~~L~l~~c~ 853 (1024)
+...+...++ ++.|++.+|. +.+..+..+.. +..+ ..++.++++.|++++. .+.+.+..+++++.+.++.|+
T Consensus 223 ~l~~~l~~~~~~~~el~l~~n~-l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~ 301 (478)
T KOG4308|consen 223 LLDEVLASGESLLRELDLASNK-LGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNP 301 (478)
T ss_pred HHHHHHhccchhhHHHHHHhcC-cchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCc
Confidence 2224555555 6667777766 66666665544 4444 5678888888877654 344555667778888888777
Q ss_pred Ccc
Q 001704 854 NMH 856 (1024)
Q Consensus 854 ~l~ 856 (1024)
...
T Consensus 302 l~~ 304 (478)
T KOG4308|consen 302 LTD 304 (478)
T ss_pred ccc
Confidence 654
No 79
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=93.02 E-value=0.1 Score=33.28 Aligned_cols=24 Identities=46% Similarity=1.023 Sum_probs=15.2
Q ss_pred CCCCCEEEecCCCcCChHHHHHHH
Q 001704 425 CPQLESLDMSNCSCVSDESLREIA 448 (1024)
Q Consensus 425 ~~~L~~L~L~~~~~l~~~~l~~l~ 448 (1024)
|++|++|+|++|..++|.++..++
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l~ 24 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQALA 24 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHHh
Confidence 456666666666666666666554
No 80
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=92.51 E-value=0.11 Score=57.26 Aligned_cols=37 Identities=35% Similarity=0.587 Sum_probs=33.8
Q ss_pred hhccCcHHHHHHHHhcCC-HHHHHHHHHHhHHHHHhhc
Q 001704 223 IRMDLTDDLLHMVFSFLD-YVDLCRAAIVCRQWRAASA 259 (1024)
Q Consensus 223 ~~~~LP~ell~~If~~L~-~~dl~~~~~Vcr~W~~~~~ 259 (1024)
.|.+||+|++..|..+|+ ..|+.+.+.||+.||..+.
T Consensus 3 ~Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~ 40 (373)
T PLN03215 3 DWSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVS 40 (373)
T ss_pred ChhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhcc
Confidence 388999999999999995 8899999999999999754
No 81
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=91.64 E-value=0.23 Score=46.46 Aligned_cols=104 Identities=15% Similarity=0.347 Sum_probs=57.1
Q ss_pred hhcCCCccEEEeccCCCCCchhhhhhccCCCCCEEecCCCccCCchh-hhhcCCCCcEEEecCCCCcchhhhHhhhhcCC
Q 001704 737 TTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLEP-VFESCLQLKVLKLQACKYLTNTSLESLYKKGS 815 (1024)
Q Consensus 737 ~~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~l~~-~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~ 815 (1024)
+.+|..|+.+.+... +...+...+..+++|+.+.+..+ +..++. .|.++++|+.+.+.+ . +.......+ ..
T Consensus 8 F~~~~~l~~i~~~~~--~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~-~~~i~~~~F---~~ 79 (129)
T PF13306_consen 8 FYNCSNLESITFPNT--IKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-N-LKSIGDNAF---SN 79 (129)
T ss_dssp TTT-TT--EEEETST----EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-T-T-EE-TTTT---TT
T ss_pred HhCCCCCCEEEECCC--eeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-c-ccccccccc---cc
Confidence 456667777777632 33444567788888999999875 777665 788888899999975 2 444444444 66
Q ss_pred CCCCcEEeCCCCccchHHHHHHHhhCCcccEEEecC
Q 001704 816 LPALQELDLSYGTLCQSAIEELLAYCTHLTHVSLNG 851 (1024)
Q Consensus 816 l~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l~~ 851 (1024)
+++|+.+++..+ +.. .....+..+ +|+.+.+..
T Consensus 80 ~~~l~~i~~~~~-~~~-i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 80 CTNLKNIDIPSN-ITE-IGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp -TTECEEEETTT--BE-EHTTTTTT--T--EEE-TT
T ss_pred cccccccccCcc-ccE-EchhhhcCC-CceEEEECC
Confidence 888889988764 322 233445666 788777765
No 82
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=91.11 E-value=0.22 Score=31.72 Aligned_cols=24 Identities=33% Similarity=0.787 Sum_probs=21.2
Q ss_pred CCCccEEEEeCCCCCChHHHHHHH
Q 001704 399 CPLLHLLDIASCHKLSDAAIRLAA 422 (1024)
Q Consensus 399 ~~~L~~L~L~~~~~i~~~~l~~~~ 422 (1024)
|++|++|+|++|..++|.++..+.
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l~ 24 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQALA 24 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHHh
Confidence 688999999999999999987764
No 83
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=90.67 E-value=0.12 Score=31.46 Aligned_cols=20 Identities=45% Similarity=0.536 Sum_probs=12.1
Q ss_pred CCCEEecCCCccCCchhhhh
Q 001704 767 NLTMLDLSYTFLTNLEPVFE 786 (1024)
Q Consensus 767 ~L~~L~Ls~n~l~~l~~~~~ 786 (1024)
+|+.|+|++|.++.+|+.|.
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp TESEEEETSSEESEEGTTTT
T ss_pred CccEEECCCCcCEeCChhhc
Confidence 35666666666666655543
No 84
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=89.02 E-value=0.29 Score=27.62 Aligned_cols=15 Identities=60% Similarity=0.649 Sum_probs=6.6
Q ss_pred CCCEEecCCCccCCc
Q 001704 767 NLTMLDLSYTFLTNL 781 (1024)
Q Consensus 767 ~L~~L~Ls~n~l~~l 781 (1024)
+|+.|+|++|+++.+
T Consensus 2 ~L~~L~l~~n~L~~l 16 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSL 16 (17)
T ss_dssp T-SEEEETSS--SSE
T ss_pred ccCEEECCCCCCCCC
Confidence 455555555555544
No 85
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=85.49 E-value=0.73 Score=28.62 Aligned_cols=23 Identities=43% Similarity=0.705 Sum_probs=14.7
Q ss_pred CCCCCEEEecCCCcCChHHHHHHH
Q 001704 425 CPQLESLDMSNCSCVSDESLREIA 448 (1024)
Q Consensus 425 ~~~L~~L~L~~~~~l~~~~l~~l~ 448 (1024)
+++|++|+|++|. ++++++..++
T Consensus 1 ~~~L~~L~l~~n~-i~~~g~~~l~ 23 (24)
T PF13516_consen 1 NPNLETLDLSNNQ-ITDEGASALA 23 (24)
T ss_dssp -TT-SEEE-TSSB-EHHHHHHHHH
T ss_pred CCCCCEEEccCCc-CCHHHHHHhC
Confidence 4677778887777 7777777664
No 86
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=83.90 E-value=0.91 Score=28.16 Aligned_cols=23 Identities=43% Similarity=0.398 Sum_probs=16.0
Q ss_pred CCCCCEEEccCcccchHHHHhhc
Q 001704 311 LRNLEALTLGRGQLGDAFFHALA 333 (1024)
Q Consensus 311 l~~L~~L~L~~~~i~~~~~~~l~ 333 (1024)
+++|++|+|++|.|++..+.+++
T Consensus 1 ~~~L~~L~l~~n~i~~~g~~~l~ 23 (24)
T PF13516_consen 1 NPNLETLDLSNNQITDEGASALA 23 (24)
T ss_dssp -TT-SEEE-TSSBEHHHHHHHHH
T ss_pred CCCCCEEEccCCcCCHHHHHHhC
Confidence 46788888888888888777664
No 87
>PF13013 F-box-like_2: F-box-like domain
Probab=79.97 E-value=2.1 Score=38.27 Aligned_cols=29 Identities=28% Similarity=0.489 Sum_probs=26.9
Q ss_pred hccCcHHHHHHHHhcCCHHHHHHHHHHhH
Q 001704 224 RMDLTDDLLHMVFSFLDYVDLCRAAIVCR 252 (1024)
Q Consensus 224 ~~~LP~ell~~If~~L~~~dl~~~~~Vcr 252 (1024)
+.+||+|++..||.+....++..+...|+
T Consensus 22 l~DLP~ELl~~I~~~C~~~~l~~l~~~~~ 50 (109)
T PF13013_consen 22 LLDLPWELLQLIFDYCNDPILLALSRTCR 50 (109)
T ss_pred hhhChHHHHHHHHhhcCcHHHHHHHHHHH
Confidence 67899999999999999999988888888
No 88
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=76.18 E-value=1.2 Score=52.49 Aligned_cols=46 Identities=28% Similarity=0.502 Sum_probs=40.3
Q ss_pred chhhhccCcHHHHHHHHhcCCHHHHHHHHHHhHHHHHhhcCCCccc
Q 001704 220 DLEIRMDLTDDLLHMVFSFLDYVDLCRAAIVCRQWRAASAHEDFWR 265 (1024)
Q Consensus 220 ~~~~~~~LP~ell~~If~~L~~~dl~~~~~Vcr~W~~~~~~~~l~~ 265 (1024)
..+.+..||.|+..+||.||+.++++++++||+.|+.+..+...|.
T Consensus 104 ~~dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~~~~~~ 149 (537)
T KOG0274|consen 104 QRDFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDDDKVWW 149 (537)
T ss_pred ccchhhcccchhcccccccCCHHHhhhhhhhcchhhhhhhccchhh
Confidence 3477888999999999999999999999999999999987755554
No 89
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=73.63 E-value=5 Score=26.05 Aligned_cols=24 Identities=42% Similarity=0.641 Sum_probs=16.4
Q ss_pred CCCCEEEecCCCcCChHHHHHHHHh
Q 001704 426 PQLESLDMSNCSCVSDESLREIALS 450 (1024)
Q Consensus 426 ~~L~~L~L~~~~~l~~~~l~~l~~~ 450 (1024)
++|++|+|++|. +++.+...+...
T Consensus 2 ~~L~~LdL~~N~-i~~~G~~~L~~~ 25 (28)
T smart00368 2 PSLRELDLSNNK-LGDEGARALAEA 25 (28)
T ss_pred CccCEEECCCCC-CCHHHHHHHHHH
Confidence 467777777777 777777666543
No 90
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=69.23 E-value=4.1 Score=25.72 Aligned_cols=20 Identities=50% Similarity=0.584 Sum_probs=14.6
Q ss_pred CCCCCEEecCCCccCCchhh
Q 001704 765 LQNLTMLDLSYTFLTNLEPV 784 (1024)
Q Consensus 765 l~~L~~L~Ls~n~l~~l~~~ 784 (1024)
+++|+.|+|++|.+..+|..
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 35677888888888777663
No 91
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=69.23 E-value=4.1 Score=25.72 Aligned_cols=20 Identities=50% Similarity=0.584 Sum_probs=14.6
Q ss_pred CCCCCEEecCCCccCCchhh
Q 001704 765 LQNLTMLDLSYTFLTNLEPV 784 (1024)
Q Consensus 765 l~~L~~L~Ls~n~l~~l~~~ 784 (1024)
+++|+.|+|++|.+..+|..
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 35677888888888777663
No 92
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=62.87 E-value=11 Score=24.43 Aligned_cols=19 Identities=42% Similarity=0.615 Sum_probs=10.8
Q ss_pred CCCcEEeCCCCccchHHHH
Q 001704 817 PALQELDLSYGTLCQSAIE 835 (1024)
Q Consensus 817 ~~L~~L~l~~n~l~~~~~~ 835 (1024)
+.|++|+|++|.+.+.+..
T Consensus 2 ~~L~~LdL~~N~i~~~G~~ 20 (28)
T smart00368 2 PSLRELDLSNNKLGDEGAR 20 (28)
T ss_pred CccCEEECCCCCCCHHHHH
Confidence 3566666666666554433
No 93
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=58.05 E-value=11 Score=43.41 Aligned_cols=33 Identities=21% Similarity=0.293 Sum_probs=17.5
Q ss_pred CCCCcEEeCCCCccchH------HHHHHHhhCCcccEEE
Q 001704 816 LPALQELDLSYGTLCQS------AIEELLAYCTHLTHVS 848 (1024)
Q Consensus 816 l~~L~~L~l~~n~l~~~------~~~~~l~~~~~L~~L~ 848 (1024)
...|++|-+.+|+++.. .+..+...+|+|..||
T Consensus 269 ~l~Leel~l~GNPlc~tf~~~s~yv~~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 269 GLPLEELVLEGNPLCTTFSDRSEYVSAIRELFPKLLRLD 307 (585)
T ss_pred CCCHHHeeecCCccccchhhhHHHHHHHHHhcchheeec
Confidence 34566666666665443 2333344566666654
No 94
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=57.90 E-value=13 Score=42.77 Aligned_cols=81 Identities=21% Similarity=0.273 Sum_probs=47.7
Q ss_pred cCCCCceecccCccH------HHHHhcCCCccEEEEeCCCC-C-ChHHHHHHHhcCCCCCEEEecCCCcCC-----hHHH
Q 001704 378 RCPQLEHLSLKRSNM------AQAVLNCPLLHLLDIASCHK-L-SDAAIRLAATSCPQLESLDMSNCSCVS-----DESL 444 (1024)
Q Consensus 378 ~~~~L~~L~L~~~~l------~~~~~~~~~L~~L~L~~~~~-i-~~~~l~~~~~~~~~L~~L~L~~~~~l~-----~~~l 444 (1024)
+.|.+..+.|++|.+ ..+....|+|+.|+|++|.. + ++..+.. -....|++|-+.+|+..+ .+.+
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K--~k~l~Leel~l~GNPlc~tf~~~s~yv 293 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDK--LKGLPLEELVLEGNPLCTTFSDRSEYV 293 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhh--hcCCCHHHeeecCCccccchhhhHHHH
Confidence 334444444444432 34566778888888888721 1 1112222 234578888899888332 3456
Q ss_pred HHHHHhCCcccEEecc
Q 001704 445 REIALSCANLRILNSS 460 (1024)
Q Consensus 445 ~~l~~~~~~L~~L~L~ 460 (1024)
.++.+.+|+|..||=.
T Consensus 294 ~~i~~~FPKL~~LDG~ 309 (585)
T KOG3763|consen 294 SAIRELFPKLLRLDGV 309 (585)
T ss_pred HHHHHhcchheeecCc
Confidence 6777788888888743
No 95
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=55.15 E-value=7.2 Score=24.81 Aligned_cols=18 Identities=33% Similarity=0.370 Sum_probs=14.2
Q ss_pred CCCCEEecCCCccCCchh
Q 001704 766 QNLTMLDLSYTFLTNLEP 783 (1024)
Q Consensus 766 ~~L~~L~Ls~n~l~~l~~ 783 (1024)
++|+.|++++|+++.+|.
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 467888888888888776
No 96
>PF09372 PRANC: PRANC domain; InterPro: IPR018272 This presumed domain is found at the C terminus of a variety of Pox virus proteins. The PRANC (Pox proteins Repeats of ANkyrin, C-terminal) domain is also found on its own in some proteins []. The function of this domain is unknown, but it appears to be related to the F-box domain and may play a similar role.
Probab=52.17 E-value=13 Score=32.66 Aligned_cols=26 Identities=15% Similarity=0.155 Sum_probs=23.0
Q ss_pred hhhccCcHHHHHHHHhcCCHHHHHHH
Q 001704 222 EIRMDLTDDLLHMVFSFLDYVDLCRA 247 (1024)
Q Consensus 222 ~~~~~LP~ell~~If~~L~~~dl~~~ 247 (1024)
..|..||.|+..+|+++|+..|+...
T Consensus 70 ~~w~~LP~EIk~~Il~~L~~~dL~~l 95 (97)
T PF09372_consen 70 NYWNILPIEIKYKILEYLSNKDLKKL 95 (97)
T ss_pred CchhhCCHHHHHHHHHcCCHHHHHHH
Confidence 56999999999999999999998643
No 97
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=47.65 E-value=15 Score=23.46 Aligned_cols=16 Identities=38% Similarity=0.472 Sum_probs=10.5
Q ss_pred CCCCEEecCCCccCCc
Q 001704 766 QNLTMLDLSYTFLTNL 781 (1024)
Q Consensus 766 ~~L~~L~Ls~n~l~~l 781 (1024)
.+|+.|++++|+|+.+
T Consensus 2 ~~L~~L~L~~NkI~~I 17 (26)
T smart00365 2 TNLEELDLSQNKIKKI 17 (26)
T ss_pred CccCEEECCCCcccee
Confidence 5677777777776543
No 98
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=37.82 E-value=19 Score=37.24 Aligned_cols=46 Identities=20% Similarity=0.148 Sum_probs=38.9
Q ss_pred hhhccCcHHHHHHHHhcCC-HHHHHHHHHHhHHHHHhhcCCCccccc
Q 001704 222 EIRMDLTDDLLHMVFSFLD-YVDLCRAAIVCRQWRAASAHEDFWRCL 267 (1024)
Q Consensus 222 ~~~~~LP~ell~~If~~L~-~~dl~~~~~Vcr~W~~~~~~~~l~~~l 267 (1024)
..+.+||.|++..|+..|+ .+|+..++.|-..-+.++.+..+|+.+
T Consensus 200 ltl~dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l~~e~~iWkkL 246 (332)
T KOG3926|consen 200 LTLHDLPLECVLNILLRLSDHRDLESLAQAWETLAKLSEERRIWKKL 246 (332)
T ss_pred CCcccchHHHHHHHHHHccCcchHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 3467899999999999998 789999999888888887777888754
No 99
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=31.16 E-value=2.2e+02 Score=32.63 Aligned_cols=142 Identities=19% Similarity=0.106 Sum_probs=80.6
Q ss_pred ccCCCcccEEecccCCCCchhhHhhhhhcCC-----CccEEEeccCCCCCchhhhhhccCCCCCEEecCCCccCCc-hh-
Q 001704 711 YINCPLLTSLDASFCSQLKDDCLSATTTSCP-----LIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNL-EP- 783 (1024)
Q Consensus 711 ~~~~~~L~~L~L~~~~~l~d~~l~~~~~~~~-----~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~l-~~- 783 (1024)
+..-+++ +|++..+ ...++.++.++-... .=-.+++..|+.-......+-..-..+++|.+..|.+.+- ..
T Consensus 296 fS~~~sg-hln~~~~-~~psE~lks~LLgla~ne~t~g~rldl~~cp~~~a~vleaci~g~R~q~l~~rdnnldgeg~~v 373 (553)
T KOG4242|consen 296 FSPDPSG-HLNSRPR-YTPSEKLKSMLLGLAENEATLGARLDLRRCPLERAEVLEACIFGQRVQVLLQRDNNLDGEGGAV 373 (553)
T ss_pred cCcCccc-ccccccc-cCchhhhhhhhcccccccccccccCChhhccccccchhhccccceeeeEeeccccccccccccc
Confidence 4444667 8888877 465666666543321 1124566777765544444433444588999999887752 11
Q ss_pred -hhhcCCCCcEEEecCCCC--cchhhhH--hhhh-cCCCCCCcEEeCCCCccchH--HHHHHHhhCCcccEEEecCCCC
Q 001704 784 -VFESCLQLKVLKLQACKY--LTNTSLE--SLYK-KGSLPALQELDLSYGTLCQS--AIEELLAYCTHLTHVSLNGCGN 854 (1024)
Q Consensus 784 -~~~~~~~L~~L~l~~c~~--l~~~~~~--~l~~-~~~l~~L~~L~l~~n~l~~~--~~~~~l~~~~~L~~L~l~~c~~ 854 (1024)
....-++.+.+++.+-.. +-+.... .... -...--+..+.++.|.+... .....+..-+.+..|+++||..
T Consensus 374 gk~~~s~s~r~l~agrs~~kqvm~s~~~a~~v~k~~~~~g~l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn~m 452 (553)
T KOG4242|consen 374 GKRKQSKSGRILKAGRSGDKQVMDSSTEAPPVSKKSRTHGVLAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGNGM 452 (553)
T ss_pred cceeeccccccccccccCCceeccccccchhhhhhhcccccccCcccCCCcccccHHHHHHhhccCcccccccccCCCc
Confidence 344556777777765332 1111111 1100 12234578888888877553 2223345567889999999764
No 100
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=24.90 E-value=2.1 Score=43.24 Aligned_cols=85 Identities=14% Similarity=0.031 Sum_probs=47.7
Q ss_pred cCCCccEEEeccCCCCCchhhhhhccCCCCCEEecCCCccCCchhhhhcCCCCcEEEecCCCCcchhhhHhhhhcCCCCC
Q 001704 739 SCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLEPVFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPA 818 (1024)
Q Consensus 739 ~~~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~l~~ 818 (1024)
.+...+.|+++.+...... ..++.++.|..|+++.|.+..+|.-+.+...++.+...+|. .+..+.. ....+.
T Consensus 40 ~~kr~tvld~~s~r~vn~~--~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~-~~~~p~s----~~k~~~ 112 (326)
T KOG0473|consen 40 SFKRVTVLDLSSNRLVNLG--KNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNN-HSQQPKS----QKKEPH 112 (326)
T ss_pred ccceeeeehhhhhHHHhhc--cchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccc-hhhCCcc----ccccCC
Confidence 4455666666666543321 34445556666666666666666666666666666666554 3332222 155666
Q ss_pred CcEEeCCCCccc
Q 001704 819 LQELDLSYGTLC 830 (1024)
Q Consensus 819 L~~L~l~~n~l~ 830 (1024)
++.++.-.+.+.
T Consensus 113 ~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 113 PKKNEQKKTEFF 124 (326)
T ss_pred cchhhhccCcch
Confidence 666666666554
No 101
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=23.50 E-value=72 Score=20.33 Aligned_cols=9 Identities=33% Similarity=0.460 Sum_probs=4.1
Q ss_pred ccEEEEeCC
Q 001704 402 LHLLDIASC 410 (1024)
Q Consensus 402 L~~L~L~~~ 410 (1024)
|++|.|...
T Consensus 2 LKtL~L~~v 10 (26)
T PF07723_consen 2 LKTLHLDSV 10 (26)
T ss_pred CeEEEeeEE
Confidence 444444443
Done!