Query 001704
Match_columns 1024
No_of_seqs 406 out of 4434
Neff 9.5
Searched_HMMs 29240
Date Tue Mar 26 17:20:34 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001704.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_999-1003//hhsearch_pdb/001704hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 1.0 1 1 366.3 19.5 625 287-1003 50-721 (768)
2 3rgz_A Protein brassinosteroid 1.0 1 1 342.8 27.9 664 250-1003 38-744 (768)
3 1ziw_A TOLL-like receptor 3; i 1.0 1 1 308.5 30.2 206 287-513 25-237 (680)
4 1ziw_A TOLL-like receptor 3; i 1.0 1 1 307.3 26.2 225 284-513 46-287 (680)
5 2p1m_B Transport inhibitor res 1.0 1 1 302.5 29.5 506 222-853 4-542 (594)
6 3t6q_A CD180 antigen; protein- 1.0 1 1 296.5 25.0 176 287-483 33-212 (606)
7 3vq2_A TLR4, TOLL-like recepto 1.0 1 1 295.3 17.4 202 287-508 32-239 (606)
8 3ogk_B Coronatine-insensitive 1.0 1 1 294.3 24.9 119 225-347 14-149 (592)
9 3t6q_A CD180 antigen; protein- 1.0 1 1 285.5 28.0 175 313-529 34-212 (606)
10 3j0a_A TOLL-like receptor 5; m 1.0 1 1 280.6 10.4 489 286-854 23-559 (844)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=366.31 Aligned_cols=625 Identities=18% Similarity=0.170 Sum_probs=375.8
Q ss_pred CCCEEEEECCCCCHHHH---HHHHHHCCCCCCEEECCCCCCCHHHHHHHCCCCCCCEEEECCCCCCCCCCC--CCCCCCC
Q ss_conf 99309997289712599---999985099998998458534458899602999987999328878887322--1435876
Q 001704 287 PNATEVNIYGAPAIHLL---VMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQE--IPINHDQ 361 (1024)
Q Consensus 287 ~~l~~L~l~~~~~~~~~---~~~~l~~~~~L~~L~L~~~~i~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~--~~~~~~~ 361 (1024)
.+|+.+++++. .+.+. ++.++..++.|+.++++.+.+.. .+..+..+++|++|++++|.+.+.++. .+..+++
T Consensus 50 ~~v~~L~L~~~-~l~g~~~~l~~~l~~L~~L~~l~~~~~~~~~-l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~ 127 (768)
T 3rgz_A 50 DKVTSIDLSSK-PLNVGFSAVSSSLLSLTGLESLFLSNSHING-SVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSG 127 (768)
T ss_dssp TEEEEEECTTS-CCCEEHHHHHHHTTTCTTCCEEECTTSCEEE-CCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTT
T ss_pred CCEEEEECCCC-CCCCCCCCCCHHHHCCCCCCCCCCCCCCCCC-CCHHHCCCCCCCEEECCCCCCCCCCCCHHHHHCCCC
T ss_conf 92789877899-8677557669657316802246786888678-703324578899898989857870789678727889
Q ss_pred CCEEEECCCCCCHHCCCCCCCCEECCCCCCHHHHHHCCCCCCEEEEECCCCCCHHHHH--HHHHCCCCCCEEEECCCCCC
Q ss_conf 3199810663300123599884010358548999726998339988178999958999--99814998777982588768
Q 001704 362 LRRLEITKCRVMRVSIRCPQLEHLSLKRSNMAQAVLNCPLLHLLDIASCHKLSDAAIR--LAATSCPQLESLDMSNCSCV 439 (1024)
Q Consensus 362 L~~L~L~~~~~~~l~~~~~~L~~L~L~~~~l~~~~~~~~~L~~L~L~~~~~i~~~~l~--~~~~~~~~L~~L~L~~~~~i 439 (1024)
|++|++++|.+...... .....+++|++|++++|. ++..... ..+..+++|++|++++|. +
T Consensus 128 L~~L~Ls~n~l~~~~~~---------------~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~l~~L~~L~Ls~n~-l 190 (768)
T 3rgz_A 128 LKFLNVSSNTLDFPGKV---------------SGGLKLNSLEVLDLSANS-ISGANVVGWVLSDGCGELKHLAISGNK-I 190 (768)
T ss_dssp CCEEECCSSEEECCSSC---------------CSCCCCTTCSEEECCSSC-CEEETHHHHHHTTCCTTCCEEECCSSE-E
T ss_pred CCEEECCCCCCCCCCCH---------------HHHCCCCCCCEEECCCCC-CCCCCCHHHHHHCCCCCCCEEECCCCC-C
T ss_conf 99898968826774797---------------785638899989897983-588587155664358988989897880-3
Q ss_pred CHHHHHHHHHHCCCCCEEECCCCC---CCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHCCCCCCEEEECCCCCCCCCCC
Q ss_conf 948999999828866588145788---88812349998649980478899704799631499966998138988721245
Q 001704 440 SDESLREIALSCANLRILNSSYCP---NISLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSL 516 (1024)
Q Consensus 440 ~~~~l~~l~~~~~~L~~L~L~~~~---~l~~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 516 (1024)
.+... + ..+++|++|++++|. .++. +..+++|++|++++| .+....+..+..+++|+.|++++|...+..+.
T Consensus 191 ~~~~~--~-~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n-~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~ 265 (768)
T 3rgz_A 191 SGDVD--V-SRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGN-KLSGDFSRAISTCTELKLLNISSNQFVGPIPP 265 (768)
T ss_dssp ESCCB--C-TTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSS-CCCSCHHHHTTTCSSCCEEECCSSCCEESCCC
T ss_pred CCCCC--C-CCCCCCCEEECCCCCCCCCCCC-CCCCCCCCEEECCCC-CCCCCCCHHHHCCCCCCEEECCCCCCCCCCCC
T ss_conf 46578--4-5478689898928827887711-126999998979488-58781657774488889898988866571672
Q ss_pred -CCCCCCEEEECCCCCCCCCCCCCCCCCCC---CC-CCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEECCC
Q ss_conf -58767557533555530011122233411---14-46644533022454111110000012899997467552994357
Q 001704 517 -ELPRLQNIRLVHCRKFADLNLRAMMLSSI---MV-SNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTD 591 (1024)
Q Consensus 517 -~l~~L~~L~l~~~~~l~~l~l~~~~l~~~---~l-~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~L~~L~Ls~ 591 (1024)
.+++|+.|.+.++ .+... .+ ..|++|+.+++++|.+.+.....+. .+++|+.|++++
T Consensus 266 ~~l~~L~~L~L~~n-----------~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~-------~l~~L~~L~L~~ 327 (768)
T 3rgz_A 266 LPLKSLQYLSLAEN-----------KFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFG-------SCSLLESLALSS 327 (768)
T ss_dssp CCCTTCCEEECCSS-----------EEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGG-------GCTTCCEEECCS
T ss_pred CCCCCCCEEECCCC-----------CCCCCCCHHHHHHCCCCCEEECCCCCCCCCCCHHHH-------CCCCCCEEECCC
T ss_conf 43687898979178-----------557725888884468688998968967784236775-------587766778978
Q ss_pred CCCCHHHHHHH-HCCCCCCCCCCEEECCCCCCCCE-ECCCCCCCCEEECCCCCCCCCCCCCC-CCCCEEECCCCCCCCCC
Q ss_conf 84740233443-01889999856895458989851-01115765524144674542022248-97548981788871023
Q 001704 592 CESLTNSVCEV-FSDGGGCPMLKSLVLDNCEGLTV-VRFCSTSLVSLSLVGCRAITALELKC-PILEKVCLDGCDHIESA 668 (1024)
Q Consensus 592 c~~l~~~~~~~-~~~~~~~~~L~~L~l~~c~~l~~-l~~~~~~l~~l~l~~~~~l~~l~~~~-~~L~~L~l~~c~~l~~~ 668 (1024)
| .+++..+.. + ..+++|+.|++++|. ++. ++. ....+ ++|+.++++++.....
T Consensus 328 n-~l~~~ip~~~l---~~l~~L~~L~Ls~n~-l~~~~p~------------------~l~~l~~~L~~L~Ls~N~l~~~- 383 (768)
T 3rgz_A 328 N-NFSGELPMDTL---LKMRGLKVLDLSFNE-FSGELPE------------------SLTNLSASLLTLDLSSNNFSGP- 383 (768)
T ss_dssp S-EEEEECCHHHH---TTCTTCCEEECCSSE-EEECCCT------------------THHHHTTTCSEEECCSSEEEEE-
T ss_pred C-CCCCCCCHHHH---HCCCCCCEEECCCCC-CCCCCCH------------------HHHHHHCCCCEEECCCCCCCCC-
T ss_conf 8-52573797887---248888788484784-3762309------------------8986322771998627874787-
Q ss_pred CCCCCCCCEEECCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHCCCCCCEEEE
Q ss_conf 54444443552267777631121234214996505566574344797662882456789713337654204999669971
Q 001704 669 SFVPVALQSLNLGICPKLSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLIL 748 (1024)
Q Consensus 669 ~~~p~~L~~l~l~~~~~L~~L~l~~~~l~~l~l~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~l 748 (1024)
.|..+ ....+++|+.+.+.+|.+. +.++..+..+++|+.|++++| .++ ..++..+..+++|+.|++
T Consensus 384 --~~~~~---~~~~~~~L~~L~L~~n~l~-------~~~p~~l~~l~~L~~L~Ls~N-~l~-~~~p~~l~~l~~L~~L~L 449 (768)
T 3rgz_A 384 --ILPNL---CQNPKNTLQELYLQNNGFT-------GKIPPTLSNCSELVSLHLSFN-YLS-GTIPSSLGSLSKLRDLKL 449 (768)
T ss_dssp --CCTTT---TCSTTCCCCEEECCSSEEE-------EECCGGGGGCTTCCEEECCSS-EEE-SCCCGGGGGCTTCCEEEC
T ss_pred --CCHHH---HHCCCCCCCEEECCCCCCC-------CCCCHHHHCCCCCCEEECCCC-CCC-CCCCHHHHCCCCCCEEEC
T ss_conf --67666---5332477618989778465-------424877756898798989588-466-854677744998898989
Q ss_pred CCCCCCCCHHHHHHCCCCCCCEEECCCCCCCC-CHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHCCCCCCCCEEECCCC
Q ss_conf 25888792256620049987989538973479-23664138987699823787863021475661399999729848998
Q 001704 749 MSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTN-LEPVFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYG 827 (1024)
Q Consensus 749 ~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~-l~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~l~~L~~L~ls~n 827 (1024)
.+|... ...+..+..+++|+.|++++|.+.+ +|..+..+++|+.|++++|. +++..+..+ ..+++|+.|++++|
T Consensus 450 ~~n~l~-~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~-l~~~~p~~~---~~l~~L~~L~L~~N 524 (768)
T 3rgz_A 450 WLNMLE-GEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNR-LTGEIPKWI---GRLENLAILKLSNN 524 (768)
T ss_dssp CSSCCC-SCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSC-CCSCCCGGG---GGCTTCCEEECCSS
T ss_pred CCCCCC-CCCCHHHCCCCCCEEEEECCCCCCCCCCHHHHCCCCCCEEECCCCC-CCCCCCHHH---HCCCCCCEEECCCC
T ss_conf 788154-7189788287773299901995137588788169989989753995-189687688---56899998989789
Q ss_pred CCCHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--------------CC------CCCC
Q ss_conf 554579999995199612998069788222434667888888998666777889--------------87------8644
Q 001704 828 TLCQSAIEELLAYCTHLTHVSLNGCGNMHDLNWGASGCQPFESPSVYNSCGIFP--------------HE------NIHE 887 (1024)
Q Consensus 828 ~l~~~~~~~~l~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~l~~l~~l~~~~~--------------~~------~~~~ 887 (1024)
.+.+ .++..+..+++|+.|++.+|.....++.... ....+........ .. ....
T Consensus 525 ~l~~-~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 598 (768)
T 3rgz_A 525 SFSG-NIPAELGDCRSLIWLDLNTNLFNGTIPAAMF-----KQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQG 598 (768)
T ss_dssp CCEE-ECCGGGGGCTTCCEEECCSSEEESBCCGGGG-----TTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTT
T ss_pred CCCC-CCCHHHCCCCCCCEEECCCCCCCCCCCHHHH-----CCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 4337-4887770889899898988846882795786-----042122320134542111134443222233222100135
Q ss_pred CCCCCCCCCCCEECCCC--CCCCCCCCCCCCCCCCCCEEEECCCC---CCCHHHHCCCCCCEEECCCCCCCCEEE---CC
Q ss_conf 33554333452002599--98410046664334774489805767---820221003564266233678875321---24
Q 001704 888 SIDQPNRLLQNLNCVGC--PNIRKVFIPPQARCFHLSSLNLSLSA---NLKEVDVACFNLCFLNLSNCCSLETLK---LD 959 (1024)
Q Consensus 888 ~~~~~~~~L~~L~i~~c--~~l~~~~~~~~~~~~~L~~L~l~~~~---~l~~~~~~~~~L~~L~l~~c~~L~~l~---~~ 959 (1024)
........+..+..... ..+.....+.+..+.+|+.|+++++. .++.....+++|+.|+++++.--..++ ..
T Consensus 599 ~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~ 678 (768)
T 3rgz_A 599 IRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGD 678 (768)
T ss_dssp CCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGG
T ss_pred CCCHHHHCCCCCCCCCCCCCEECCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHC
T ss_conf 56323200232110011331004627433403356657978588015558778841415787848688038878967847
Q ss_pred CCCCCEEEECCCCCCHHHHHHHHHCCCCCCEEECCCCCCCCHHH
Q ss_conf 87555698215667756699998307767589634687878016
Q 001704 960 CPKLTSLFLQSCNIDEEGVESAITQCGMLETLDVRFCPKICSTS 1003 (1024)
Q Consensus 960 ~~~L~~L~l~~~~l~~~~l~~~~~~~~sL~~L~i~~c~~l~~~~ 1003 (1024)
+++|+.|++++|+++ ..+|..+..+++|+.|++++|+--..+|
T Consensus 679 L~~L~~LdLs~N~l~-g~ip~~l~~l~~L~~L~ls~N~l~g~iP 721 (768)
T 3rgz_A 679 LRGLNILDLSSNKLD-GRIPQAMSALTMLTEIDLSNNNLSGPIP 721 (768)
T ss_dssp CTTCCEEECCSSCCE-ECCCGGGGGCCCCSEEECCSSEEEEECC
T ss_pred CCCCCEEECCCCCCC-CCCCHHHHCCCCCCEEECCCCCCCCCCC
T ss_conf 778998989788023-8688677578878978796881556089
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=342.76 Aligned_cols=664 Identities=18% Similarity=0.186 Sum_probs=402.8
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCHH--HHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCCCCCEEECCCCCCCHH
Q ss_conf 7497999530998640022477877888--89999731899309997289712599999985099998998458534458
Q 001704 250 VCRQWRAASAHEDFWRCLNFENRKISVE--QFEDVCQRYPNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDA 327 (1024)
Q Consensus 250 Vck~W~~~~~~~~~~~~l~l~~~~~~~~--~l~~l~~~~~~l~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~i~~~ 327 (1024)
-|.+|..+.++....+.+++....+... .+..-+....+++.++++.. .+.. .+..+..+++|++|++++|.+.+.
T Consensus 38 ~~C~w~gv~C~~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~-~~~~-l~~~~~~l~~L~~L~Ls~n~l~~~ 115 (768)
T 3rgz_A 38 NPCTFDGVTCRDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNS-HING-SVSGFKCSASLTSLDLSRNSLSGP 115 (768)
T ss_dssp CGGGSTTEEEETTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTTS-CEEE-CCCCCCCCTTCCEEECCSSEEEEE
T ss_pred CCCCCCCEEECCCCEEEEECCCCCCCCCCCCCCHHHHCCCCCCCCCCCCC-CCCC-CCHHHCCCCCCCEEECCCCCCCCC
T ss_conf 87688413878992789877899867755766965731680224678688-8678-703324578899898989857870
Q ss_pred HHH--HHCCCCCCCEEEECCCCCCCCCCCCC-CCCCCCCEEEECCCCCCHH-------CCCCCCCCEECCCCCCHHH--H
Q ss_conf 899--60299998799932887888732214-3587631998106633001-------2359988401035854899--9
Q 001704 328 FFH--ALADCSMLKSLNVNDATLGNGVQEIP-INHDQLRRLEITKCRVMRV-------SIRCPQLEHLSLKRSNMAQ--A 395 (1024)
Q Consensus 328 ~~~--~l~~~~~L~~L~L~~~~l~~~~~~~~-~~~~~L~~L~L~~~~~~~l-------~~~~~~L~~L~L~~~~l~~--~ 395 (1024)
.+. .++.+++|++|++++|.+.+.++... ..+++|++|++++|.+... ...+++|++|+++++.+.. .
T Consensus 116 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 195 (768)
T 3rgz_A 116 VTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD 195 (768)
T ss_dssp GGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB
T ss_pred CCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCHHHHHHCCCCCCCEEECCCCCCCCCCC
T ss_conf 78967872788999898968826774797785638899989897983588587155664358988989897880346578
Q ss_pred HHCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHHCCCCCEEECCCCCCC-CCCCCCCCC
Q ss_conf 7269983399881789999589999981499877798258876894899999982886658814578888-812349998
Q 001704 396 VLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCPNI-SLESVRLPM 474 (1024)
Q Consensus 396 ~~~~~~L~~L~L~~~~~i~~~~l~~~~~~~~~L~~L~L~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~l-~~~~~~~~~ 474 (1024)
...+++|++|++++|. ++. .++. +..+++|++|++++|. ++...+..+. .+++|++|++++|... ......+++
T Consensus 196 ~~~l~~L~~L~Ls~n~-l~~-~~~~-l~~l~~L~~L~Ls~n~-l~~~~~~~l~-~l~~L~~L~Ls~n~l~~~~~~~~l~~ 270 (768)
T 3rgz_A 196 VSRCVNLEFLDVSSNN-FST-GIPF-LGDCSALQHLDISGNK-LSGDFSRAIS-TCTELKLLNISSNQFVGPIPPLPLKS 270 (768)
T ss_dssp CTTCTTCCEEECCSSC-CCS-CCCB-CTTCCSCCEEECCSSC-CCSCHHHHTT-TCSSCCEEECCSSCCEESCCCCCCTT
T ss_pred CCCCCCCCEEECCCCC-CCC-CCCC-CCCCCCCCEEECCCCC-CCCCCCHHHH-CCCCCCEEECCCCCCCCCCCCCCCCC
T ss_conf 4547868989892882-788-7711-1269999989794885-8781657774-48888989898886657167243687
Q ss_pred CCEEEECCCCCCCHHHHHHHHC-CCCCCEEEECCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 6499804788997047996314-999669981389887212455876755753355553001112223341114466445
Q 001704 475 LTVLQLHSCEGITSASMAAISH-SYMLEVLELDNCNLLTSVSLELPRLQNIRLVHCRKFADLNLRAMMLSSIMVSNCAAL 553 (1024)
Q Consensus 475 L~~L~L~~~~~i~~~~~~~l~~-l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~l~~~~l~~~~l~~~~~L 553 (1024)
|++|++.+| .+....+..+.. +++|+.|++++|...+..+. .+..+++|
T Consensus 271 L~~L~L~~n-~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~-----------------------------~~~~l~~L 320 (768)
T 3rgz_A 271 LQYLSLAEN-KFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPP-----------------------------FFGSCSLL 320 (768)
T ss_dssp CCEEECCSS-EEEESCCCCSCTTCTTCSEEECCSSEEEECCCG-----------------------------GGGGCTTC
T ss_pred CCEEECCCC-CCCCCCCHHHHHHCCCCCEEECCCCCCCCCCCH-----------------------------HHHCCCCC
T ss_conf 898979178-557725888884468688998968967784236-----------------------------77558776
Q ss_pred CEECCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHCCCCCCC-CCCEEECCCCCCCCEECCCCCC
Q ss_conf 330224541111100000128999974675529943578474023344301889999-8568954589898510111576
Q 001704 554 HRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCP-MLKSLVLDNCEGLTVVRFCSTS 632 (1024)
Q Consensus 554 ~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~L~~L~Ls~c~~l~~~~~~~~~~~~~~~-~L~~L~l~~c~~l~~l~~~~~~ 632 (1024)
+.+++++|.+.+..... ....+++|++|++++| .+++..+..+ ..++ +|+.|++++|. ++...
T Consensus 321 ~~L~L~~n~l~~~ip~~------~l~~l~~L~~L~Ls~n-~l~~~~p~~l---~~l~~~L~~L~Ls~N~-l~~~~----- 384 (768)
T 3rgz_A 321 ESLALSSNNFSGELPMD------TLLKMRGLKVLDLSFN-EFSGELPESL---TNLSASLLTLDLSSNN-FSGPI----- 384 (768)
T ss_dssp CEEECCSSEEEEECCHH------HHTTCTTCCEEECCSS-EEEECCCTTH---HHHTTTCSEEECCSSE-EEEEC-----
T ss_pred CEEECCCCCCCCCCCHH------HHHCCCCCCEEECCCC-CCCCCCCHHH---HHHHCCCCEEECCCCC-CCCCC-----
T ss_conf 67789788525737978------8724888878848478-4376230989---8632277199862787-47876-----
Q ss_pred CCEEECCCCCCCCCCC-CCCCCCCEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCEEEEEECCCCCCCCC
Q ss_conf 5524144674542022-248975489817888710235444444355226777763112123421499650556657434
Q 001704 633 LVSLSLVGCRAITALE-LKCPILEKVCLDGCDHIESASFVPVALQSLNLGICPKLSTLGIEALHMVVLELKGCGVLSDAY 711 (1024)
Q Consensus 633 l~~l~l~~~~~l~~l~-~~~~~L~~L~l~~c~~l~~~~~~p~~L~~l~l~~~~~L~~L~l~~~~l~~l~l~~~~~l~~~~ 711 (1024)
...+. ..++.|+.+++++|.... ..|.. +..+++|+.+++++|.+. +.++..+
T Consensus 385 -----------~~~~~~~~~~~L~~L~L~~n~l~~---~~p~~-----l~~l~~L~~L~Ls~N~l~-------~~~p~~l 438 (768)
T 3rgz_A 385 -----------LPNLCQNPKNTLQELYLQNNGFTG---KIPPT-----LSNCSELVSLHLSFNYLS-------GTIPSSL 438 (768)
T ss_dssp -----------CTTTTCSTTCCCCEEECCSSEEEE---ECCGG-----GGGCTTCCEEECCSSEEE-------SCCCGGG
T ss_pred -----------CHHHHHCCCCCCCEEECCCCCCCC---CCCHH-----HHCCCCCCEEECCCCCCC-------CCCCHHH
T ss_conf -----------766653324776189897784654---24877-----756898798989588466-------8546777
Q ss_pred CCCCCCCEEECCCCCCCCHHHHHHHHHCCCCCCEEEECCCCCCCCHHHHHHCCCCCCCEEECCCCCCCC-CHHHHHCCCC
Q ss_conf 479766288245678971333765420499966997125888792256620049987989538973479-2366413898
Q 001704 712 INCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTN-LEPVFESCLQ 790 (1024)
Q Consensus 712 ~~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~-l~~~~~~~~~ 790 (1024)
..+++|+.|++++| .++ ..++..+..+++|+.|++.+|... ...+..+..+++|+.|++++|.+.+ +|..+..+++
T Consensus 439 ~~l~~L~~L~L~~n-~l~-~~~p~~~~~l~~L~~L~L~~N~l~-~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~ 515 (768)
T 3rgz_A 439 GSLSKLRDLKLWLN-MLE-GEIPQELMYVKTLETLILDFNDLT-GEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLEN 515 (768)
T ss_dssp GGCTTCCEEECCSS-CCC-SCCCGGGGGCTTCCEEECCSSCCC-SCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTT
T ss_pred HCCCCCCEEECCCC-CCC-CCCCHHHCCCCCCEEEEECCCCCC-CCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCC
T ss_conf 44998898989788-154-718978828777329990199513-758878816998998975399518968768856899
Q ss_pred CCEEEECCCCCCCHHHHHHHHHCCCCCCCCEEECCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCCCCC-----------
Q ss_conf 769982378786302147566139999972984899855457999999519961299806978822243-----------
Q 001704 791 LKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELLAYCTHLTHVSLNGCGNMHDLN----------- 859 (1024)
Q Consensus 791 L~~L~l~~c~~l~~~~~~~l~~~~~l~~L~~L~ls~n~l~~~~~~~~l~~~~~L~~L~l~~c~~l~~~~----------- 859 (1024)
|++|++++|. +++..+..+ ..+++|+.|++++|.+.+. +|..+.....+..+.+.....+..+.
T Consensus 516 L~~L~L~~N~-l~~~~p~~l---~~l~~L~~L~Ls~N~l~g~-ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 590 (768)
T 3rgz_A 516 LAILKLSNNS-FSGNIPAEL---GDCRSLIWLDLNTNLFNGT-IPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGA 590 (768)
T ss_dssp CCEEECCSSC-CEEECCGGG---GGCTTCCEEECCSSEEESB-CCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSS
T ss_pred CCEEECCCCC-CCCCCCHHH---CCCCCCCEEECCCCCCCCC-CCHHHHCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 9989897894-337488777---0889899898988846882-7957860421223201345421111344432222332
Q ss_pred ------CCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCEEEECCCC--
Q ss_conf ------466788888899866677788987-86443355433345200259998410046664334774489805767--
Q 001704 860 ------WGASGCQPFESPSVYNSCGIFPHE-NIHESIDQPNRLLQNLNCVGCPNIRKVFIPPQARCFHLSSLNLSLSA-- 930 (1024)
Q Consensus 860 ------~~~~~~~~~~l~~l~~l~~~~~~~-~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~l~~~~-- 930 (1024)
.+..+.....++....+......- ............|+.|++.++. +.......++.+++|+.|+++++.
T Consensus 591 ~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~-l~g~ip~~l~~l~~L~~L~Ls~N~l~ 669 (768)
T 3rgz_A 591 GNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNM-LSGYIPKEIGSMPYLFILNLGHNDIS 669 (768)
T ss_dssp EEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSC-CBSCCCGGGGGCTTCCEEECCSSCCC
T ss_pred CCCCCCCCCCCHHHHCCCCCCCCCCCCCEECCCCCHHHHCCCCCCEEECCCCC-CCCCCCHHHHCCCCCCEEECCCCCCC
T ss_conf 22100135563232002321100113310046274334033566579785880-15558778841415787848688038
Q ss_pred -CCCHHHHCCCCCCEEECCCCCCCCEEE---CCCCCCCEEEECCCCCCHHHHHHHHHCCCCCCEEECCCCCCCCHHH
Q ss_conf -820221003564266233678875321---2487555698215667756699998307767589634687878016
Q 001704 931 -NLKEVDVACFNLCFLNLSNCCSLETLK---LDCPKLTSLFLQSCNIDEEGVESAITQCGMLETLDVRFCPKICSTS 1003 (1024)
Q Consensus 931 -~l~~~~~~~~~L~~L~l~~c~~L~~l~---~~~~~L~~L~l~~~~l~~~~l~~~~~~~~sL~~L~i~~c~~l~~~~ 1003 (1024)
.++.....+++|+.|+++++.--..++ ..+++|+.|++++|++. ..+|. ...+.++....+.+|+.++..+
T Consensus 670 g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~-g~iP~-~~~~~~~~~~~~~gN~~Lcg~~ 744 (768)
T 3rgz_A 670 GSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLS-GPIPE-MGQFETFPPAKFLNNPGLCGYP 744 (768)
T ss_dssp SCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEE-EECCS-SSSGGGSCGGGGCSCTEEESTT
T ss_pred CCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCC-CCCCC-CHHHCCCCHHHHCCCCHHCCCC
T ss_conf 878967847778998989788023868867757887897879688155-60899-6010248977756983210887
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=1.00 E-value=1 Score=308.46 Aligned_cols=206 Identities=17% Similarity=0.136 Sum_probs=104.5
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 99309997289712599999985099998998458534458899602999987999328878887322143587631998
Q 001704 287 PNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLE 366 (1024)
Q Consensus 287 ~~l~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~i~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~ 366 (1024)
++++.|++++ +.+....+..|..+++|++|++++|.+.+..+..+..+++|++|++++|.+....+..+..+.+|++|+
T Consensus 25 ~~l~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~ 103 (680)
T 1ziw_A 25 TNITVLNLTH-NQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELH 103 (680)
T ss_dssp TTCSEEECCS-SCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEE
T ss_pred CCCCEEECCC-CCCCCCCHHHHHCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEE
T ss_conf 8876888989-977875978871787675887889964856977874066768888999856756854530388889898
Q ss_pred ECCCCCCHHCCCCCCCCEECCCCCCHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHH
Q ss_conf 10663300123599884010358548999726998339988178999958999998149987779825887689489999
Q 001704 367 ITKCRVMRVSIRCPQLEHLSLKRSNMAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLRE 446 (1024)
Q Consensus 367 L~~~~~~~l~~~~~~L~~L~L~~~~l~~~~~~~~~L~~L~L~~~~~i~~~~l~~~~~~~~~L~~L~L~~~~~i~~~~l~~ 446 (1024)
+++|.+..+.. ..+..+++|++|++++|. ++.. .+..+..+++|++|++++|. ++......
T Consensus 104 L~~n~l~~~~~----------------~~~~~l~~L~~L~Ls~n~-l~~~-~~~~~~~l~~L~~L~L~~n~-l~~~~~~~ 164 (680)
T 1ziw_A 104 LMSNSIQKIKN----------------NPFVKQKNLITLDLSHNG-LSST-KLGTQVQLENLQELLLSNNK-IQALKSEE 164 (680)
T ss_dssp CCSSCCCCCCS----------------CTTTTCTTCCEEECCSSC-CSCC-CCCSSSCCTTCCEEECCSSC-CCCBCHHH
T ss_pred CCCCCCCCCCH----------------HHCCCCCCCCEEECCCCC-CCCC-CCHHHCCCCCCCEEECCCCC-CCCCCHHH
T ss_conf 98996685396----------------674156788889898995-2466-72111245567779745884-36529788
Q ss_pred HH-HHCCCCCEEECCCCC---CCCCCCCCCCCCCEEEECCCCCCCHHHHHHHH---CCCCCCEEEECCCCCCCC
Q ss_conf 99-828866588145788---88812349998649980478899704799631---499966998138988721
Q 001704 447 IA-LSCANLRILNSSYCP---NISLESVRLPMLTVLQLHSCEGITSASMAAIS---HSYMLEVLELDNCNLLTS 513 (1024)
Q Consensus 447 l~-~~~~~L~~L~L~~~~---~l~~~~~~~~~L~~L~L~~~~~i~~~~~~~l~---~l~~L~~L~l~~~~~~~~ 513 (1024)
+. ..+++|+.|++++|. ..+..+..+++|+.+.+.++ .+.......+. ..++|+.|+++++...+.
T Consensus 165 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~-~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~ 237 (680)
T 1ziw_A 165 LDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNV-QLGPSLTEKLCLELANTSIRNLSLSNSQLSTT 237 (680)
T ss_dssp HGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTC-CCHHHHHHHHHHHHTTSCCCEEECTTSCCCEE
T ss_pred HHCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHCCCC-CCCHHHHHHHHHHHHHCCCCEEECCCCCCCCC
T ss_conf 62446663217988898256558155532234455430566-46805677787775315100887457743646
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=1.00 E-value=1 Score=307.27 Aligned_cols=225 Identities=17% Similarity=0.188 Sum_probs=132.6
Q ss_pred HHCCCCEEEEECCCCCHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 31899309997289712599999985099998998458534458899602999987999328878887322143587631
Q 001704 284 QRYPNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLR 363 (1024)
Q Consensus 284 ~~~~~l~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~i~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~ 363 (1024)
..+++++.|++++ +.+....+.++..+++|+.|++++|.+.......+..+++|++|++++|.+....+..+..+++|+
T Consensus 46 ~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 124 (680)
T 1ziw_A 46 TRYSQLTSLDVGF-NTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLI 124 (680)
T ss_dssp GGGTTCSEEECCS-SCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCC
T ss_pred HCCCCCCEEECCC-CCCCCCCHHHHHCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHCCCCCCCC
T ss_conf 1787675887889-964856977874066768888999856756854530388889898989966853966741567888
Q ss_pred EEEECCCCCCHHC----CCCCCCCEECCCCCCHH----HHH--HCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCEEEE
Q ss_conf 9981066330012----35998840103585489----997--2699833998817899995899999814998777982
Q 001704 364 RLEITKCRVMRVS----IRCPQLEHLSLKRSNMA----QAV--LNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDM 433 (1024)
Q Consensus 364 ~L~L~~~~~~~l~----~~~~~L~~L~L~~~~l~----~~~--~~~~~L~~L~L~~~~~i~~~~l~~~~~~~~~L~~L~L 433 (1024)
+|++++|.+.... ..+++|++|+++++.+. ..+ ..+++|++|++++|. ++.. .+..+..+++|+.|++
T Consensus 125 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~-~~~~~~~l~~L~~L~l 202 (680)
T 1ziw_A 125 TLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQ-IKEF-SPGCFHAIGRLFGLFL 202 (680)
T ss_dssp EEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCC-CCCB-CTTGGGGSSEECEEEC
T ss_pred EEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCCCEEECCCCC-CCCC-CHHHHHHHHHHHHHHC
T ss_conf 8989899524667211124556777974588436529788624466632179888982-5655-8155532234455430
Q ss_pred CCCCCCCHHHHHHHHH--HCCCCCEEECCCCCC---CCCCCCCC--CCCCEEEECCCCCCCHHHHHHHHCCCCCCEEEEC
Q ss_conf 5887689489999998--288665881457888---88123499--9864998047889970479963149996699813
Q 001704 434 SNCSCVSDESLREIAL--SCANLRILNSSYCPN---ISLESVRL--PMLTVLQLHSCEGITSASMAAISHSYMLEVLELD 506 (1024)
Q Consensus 434 ~~~~~i~~~~l~~l~~--~~~~L~~L~L~~~~~---l~~~~~~~--~~L~~L~L~~~~~i~~~~~~~l~~l~~L~~L~l~ 506 (1024)
.++. +.......+.. ..++|+.|+++++.. .+..+..+ ++|+.|++++| .+....+..+..+++|+.|+++
T Consensus 203 ~~~~-l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~ 280 (680)
T 1ziw_A 203 NNVQ-LGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYN-NLNVVGNDSFAWLPQLEYFFLE 280 (680)
T ss_dssp TTCC-CHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTS-CCCEECTTTTTTCTTCCEEECC
T ss_pred CCCC-CCHHHHHHHHHHHHHCCCCEEECCCCCCCCCCHHHHHCCCCCCCCEEECCCC-CCCCCCCCCCCCCCCCCEEECC
T ss_conf 5664-6805677787775315100887457743646866751467677888778788-7675680211674105685577
Q ss_pred CCCCCCC
Q ss_conf 8988721
Q 001704 507 NCNLLTS 513 (1024)
Q Consensus 507 ~~~~~~~ 513 (1024)
+|...+.
T Consensus 281 ~n~l~~~ 287 (680)
T 1ziw_A 281 YNNIQHL 287 (680)
T ss_dssp SCCBSEE
T ss_pred CCCCCCC
T ss_conf 8856765
No 5
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=1.00 E-value=1 Score=302.46 Aligned_cols=506 Identities=20% Similarity=0.267 Sum_probs=282.9
Q ss_pred HHHCCCCHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCH
Q ss_conf 2201584999999980399-887999999749799953099864002247787788889999731899309997289712
Q 001704 222 EIRMDLTDDLLHMVFSFLD-YVDLCRAAIVCRQWRAASAHEDFWRCLNFENRKISVEQFEDVCQRYPNATEVNIYGAPAI 300 (1024)
Q Consensus 222 ~~~~~LP~eil~~If~~L~-~~dl~~~~~Vck~W~~~~~~~~~~~~l~l~~~~~~~~~l~~l~~~~~~l~~L~l~~~~~~ 300 (1024)
|.+..||+|+|.+||+||+ .+|+.++++|||+|+.+. ...|+.+++...... ....+..++++++.++++++...
T Consensus 4 d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~~--~~~~~~l~~~~~~~~--~~~~~~~~~~~L~~L~L~~~~~~ 79 (594)
T 2p1m_B 4 RIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIE--RWCRRKVFIGNCYAV--SPATVIRRFPKVRSVELKGKPHF 79 (594)
T ss_dssp ------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHHH--HHHCCEEEESSTTSS--CHHHHHHHCTTCCEEEEECSCGG
T ss_pred CCHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH--HHHCEEEEECCCCCC--CHHHHHHHCCCCEEEECCCCCCH
T ss_conf 25434999999999855698235899999998998755--644108761133346--87999862887529961488732
Q ss_pred HH--------------HHHHHHHCCCCCCEEECCCCCCCHHHHHHHC-CCCCCCEEEECCCC-CCC-CCCCCCCCCCCCC
Q ss_conf 59--------------9999985099998998458534458899602-99998799932887-888-7322143587631
Q 001704 301 HL--------------LVMKAVSLLRNLEALTLGRGQLGDAFFHALA-DCSMLKSLNVNDAT-LGN-GVQEIPINHDQLR 363 (1024)
Q Consensus 301 ~~--------------~~~~~l~~~~~L~~L~L~~~~i~~~~~~~l~-~~~~L~~L~L~~~~-l~~-~~~~~~~~~~~L~ 363 (1024)
.+ ........+++|+.|+++++.+++..+..+. .+++|++|++.+|. ++. .++.+...+++|+
T Consensus 80 ~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~ 159 (594)
T 2p1m_B 80 ADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLK 159 (594)
T ss_dssp GGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCC
T ss_pred HHCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCEECHHHHHHHHHHCCCCCEEECCCCCCCCHHHHHHHHHHCCCCC
T ss_conf 10254333321100589999997688877597558577599999999849998687688969978789999997689988
Q ss_pred EEEECCCCCCHHCCCCCCCCEECCCCCCHHHHHHCCCCCCEEEEECCC-CCCHHHHHHHHHCCCCCCEEEECCCCCCCHH
Q ss_conf 998106633001235998840103585489997269983399881789-9995899999814998777982588768948
Q 001704 364 RLEITKCRVMRVSIRCPQLEHLSLKRSNMAQAVLNCPLLHLLDIASCH-KLSDAAIRLAATSCPQLESLDMSNCSCVSDE 442 (1024)
Q Consensus 364 ~L~L~~~~~~~l~~~~~~L~~L~L~~~~l~~~~~~~~~L~~L~L~~~~-~i~~~~l~~~~~~~~~L~~L~L~~~~~i~~~ 442 (1024)
+|++.+|.+..... ..+......+++|++|++..|. .++...+..+...+++|++|++++|..+ .
T Consensus 160 ~L~L~~~~i~~~~~------------~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~--~ 225 (594)
T 2p1m_B 160 ELDLRESDVDDVSG------------HWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPL--E 225 (594)
T ss_dssp EEECTTCEEECCCG------------GGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCH--H
T ss_pred EEECCCCCCCCCCH------------HHHHHHHHCCCCCCEEEECCCCCCCCHHHHHHHHHHCCCCCEEECCCCCCH--H
T ss_conf 89575875677515------------799987502996748870066786788999999974997848866787767--7
Q ss_pred HHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHCCCCCCEEE-ECCCCCCCCCCCCCCCC
Q ss_conf 99999982886658814578888812349998649980478899704799631499966998-13898872124558767
Q 001704 443 SLREIALSCANLRILNSSYCPNISLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLE-LDNCNLLTSVSLELPRL 521 (1024)
Q Consensus 443 ~l~~l~~~~~~L~~L~L~~~~~l~~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~l~~L~~L~-l~~~~~~~~~~~~l~~L 521 (1024)
.+..+...+++|++|++..+.. .+..+ . .......+..+++|+.+. +..... ..++
T Consensus 226 ~l~~~~~~~~~L~~L~l~~~~~--------------~~~~~-~-~~~l~~~l~~~~~L~~Ls~~~~~~~-~~l~------ 282 (594)
T 2p1m_B 226 KLATLLQRAPQLEELGTGGYTA--------------EVRPD-V-YSGLSVALSGCKELRCLSGFWDAVP-AYLP------ 282 (594)
T ss_dssp HHHHHHHHCTTCSEEECSBCCC--------------CCCHH-H-HHHHHHHHHTCTTCCEEECCBTCCG-GGGG------
T ss_pred HHHHHHHCCCCCEECCCCCCCC--------------CCCHH-H-HHHHHHHHHCCCCCCCCCCCCCCCH-HHHH------
T ss_conf 7999986398655714543447--------------66636-6-8899999854997630358765665-5678------
Q ss_pred CEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEECCCCCCCHHHHHH
Q ss_conf 55753355553001112223341114466445330224541111100000128999974675529943578474023344
Q 001704 522 QNIRLVHCRKFADLNLRAMMLSSIMVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCE 601 (1024)
Q Consensus 522 ~~L~l~~~~~l~~l~l~~~~l~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~L~~L~Ls~c~~l~~~~~~ 601 (1024)
. .+..+++|+.|+++++.+.. ..+..+...+++|+.|++++| +++....
T Consensus 283 ----------------------~-~~~~~~~L~~L~L~~~~l~~------~~l~~~~~~~~~L~~L~l~~~--~~~~~l~ 331 (594)
T 2p1m_B 283 ----------------------A-VYSVCSRLTTLNLSYATVQS------YDLVKLLCQCPKLQRLWVLDY--IEDAGLE 331 (594)
T ss_dssp ----------------------G-GHHHHTTCCEEECTTCCCCH------HHHHHHHTTCTTCCEEEEEGG--GHHHHHH
T ss_pred ----------------------H-HHHHHCCCCEEECCCCCCCH------HHHHHHHHCCCCCCEEECCCC--CCHHHHH
T ss_conf ----------------------8-88764789989732887887------999999960987689958676--3788999
Q ss_pred HHCCCCCCCCCCEEECCCCCCCCEECCCCCCCCEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCEEECC
Q ss_conf 30188999985689545898985101115765524144674542022248975489817888710235444444355226
Q 001704 602 VFSDGGGCPMLKSLVLDNCEGLTVVRFCSTSLVSLSLVGCRAITALELKCPILEKVCLDGCDHIESASFVPVALQSLNLG 681 (1024)
Q Consensus 602 ~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~l~l~~~~~l~~l~~~~~~L~~L~l~~c~~l~~~~~~p~~L~~l~l~ 681 (1024)
.+. ..+++|+.|.+.+|.... . .+|..+.+.+... + ..
T Consensus 332 ~l~--~~~~~L~~L~L~~~~~~g-------------~---------------------~~~~~l~~~~l~~-----l-~~ 369 (594)
T 2p1m_B 332 VLA--STCKDLRELRVFPSEPFV-------------M---------------------EPNVALTEQGLVS-----V-SM 369 (594)
T ss_dssp HHH--HHCTTCCEEEEECSCTTC-------------S---------------------SCSSCCCHHHHHH-----H-HH
T ss_pred HHH--HHCCCCCEEEEECCCCCC-------------C---------------------CCCCCCCHHHHHH-----H-HH
T ss_conf 999--868788889972476544-------------3---------------------3478878889999-----9-87
Q ss_pred CCCCCCCCCCCCCCCEEEEEECCCCCCC-CCCCCCCCCEEECC-----CCCCCC----HHHHHHHHHCCCCCCEEEECCC
Q ss_conf 7777631121234214996505566574-34479766288245-----678971----3337654204999669971258
Q 001704 682 ICPKLSTLGIEALHMVVLELKGCGVLSD-AYINCPLLTSLDAS-----FCSQLK----DDCLSATTTSCPLIESLILMSC 751 (1024)
Q Consensus 682 ~~~~L~~L~l~~~~l~~l~l~~~~~l~~-~~~~~~~L~~L~l~-----~~~~l~----~~~l~~~~~~~~~L~~L~l~~~ 751 (1024)
.|++|+.+.+..+.+. ..... ....+++|+.|+++ +|..++ +..+...+..+++|+.|++.+
T Consensus 370 ~~~~L~~L~~~~~~l~-------~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~- 441 (594)
T 2p1m_B 370 GCPKLESVLYFCRQMT-------NAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG- 441 (594)
T ss_dssp HCTTCCEEEEEESCCC-------HHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-
T ss_pred HCHHHHHHHHHCCCCC-------HHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEECC-
T ss_conf 0631799997657768-------99999998608886524762346777464567723548999995589866795067-
Q ss_pred CCCCCHHHHHHCC-CCCCCEEECCCCCCCC--CHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHCCCCCCCCEEECCCCC
Q ss_conf 8879225662004-9987989538973479--236641389876998237878630214756613999997298489985
Q 001704 752 QSIGPDGLYSLRS-LQNLTMLDLSYTFLTN--LEPVFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGT 828 (1024)
Q Consensus 752 ~~~~~~~~~~l~~-l~~L~~L~Ls~~~l~~--l~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~l~~L~~L~ls~n~ 828 (1024)
.+.+.++..+.. +++|+.|++++|.+.. +......+++|+.|++++|. +++.++..+ ...+++|+.|++++|.
T Consensus 442 -~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~-~~~~~~~~~--~~~l~~L~~L~l~~~~ 517 (594)
T 2p1m_B 442 -LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCP-FGDKALLAN--ASKLETMRSLWMSSCS 517 (594)
T ss_dssp -SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCS-CCHHHHHHT--GGGGGGSSEEEEESSC
T ss_pred -CCCHHHHHHHHHHCHHCCEEECCCCCCCHHHHHHHHHCCCCCCEEECCCCC-CCHHHHHHH--HHHCCCCCEEEEECCC
T ss_conf -416899999997531161865447998489999998549986878886998-739999999--9758887789614787
Q ss_pred CCHHHHHHHHHHCCCCCEEEECCCC
Q ss_conf 5457999999519961299806978
Q 001704 829 LCQSAIEELLAYCTHLTHVSLNGCG 853 (1024)
Q Consensus 829 l~~~~~~~~l~~~~~L~~L~l~~c~ 853 (1024)
++..++......+++|+...+....
T Consensus 518 ~~~~~~~~l~~~lp~l~i~~~~~~~ 542 (594)
T 2p1m_B 518 VSFGACKLLGQKMPKLNVEVIDERG 542 (594)
T ss_dssp CBHHHHHHHHHHCTTEEEEEECSSS
T ss_pred CCHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 9799999999769997799835888
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=1.00 E-value=1 Score=296.51 Aligned_cols=176 Identities=16% Similarity=0.109 Sum_probs=98.3
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 99309997289712599999985099998998458534458899602999987999328878887322143587631998
Q 001704 287 PNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLE 366 (1024)
Q Consensus 287 ~~l~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~i~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~ 366 (1024)
+.++.|++++ +.+....+.+|..+++|++|++++|.+....+..|..+++|++|++++|.+....+..+..+++|++|+
T Consensus 33 ~~l~~L~Ls~-n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 111 (606)
T 3t6q_A 33 NSTECLEFSF-NVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLF 111 (606)
T ss_dssp TTCCEEECTT-CCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEE
T ss_pred CCCCEEECCC-CCCCCCCHHHHCCCCCCEEEECCCCCCCEECHHHCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEE
T ss_conf 8675898158-734717966725676652897889835524851136843367644889856545865523442153765
Q ss_pred ECCCCCCHHCCCCCCCCEECCCCCCHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHH
Q ss_conf 10663300123599884010358548999726998339988178999958999998149987779825887689489999
Q 001704 367 ITKCRVMRVSIRCPQLEHLSLKRSNMAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLRE 446 (1024)
Q Consensus 367 L~~~~~~~l~~~~~~L~~L~L~~~~l~~~~~~~~~L~~L~L~~~~~i~~~~l~~~~~~~~~L~~L~L~~~~~i~~~~l~~ 446 (1024)
+++|.+..+.. ..+..+++|++|++++|. ++...++.. ..+++|++|++++|. ++......
T Consensus 112 L~~n~i~~l~~----------------~~~~~l~~L~~L~L~~n~-l~~~~~~~~-~~l~~L~~L~L~~n~-l~~~~~~~ 172 (606)
T 3t6q_A 112 FIQTGISSIDF----------------IPLHNQKTLESLYLGSNH-ISSIKLPKG-FPTEKLKVLDFQNNA-IHYLSKED 172 (606)
T ss_dssp CTTSCCSCGGG----------------SCCTTCTTCCEEECCSSC-CCCCCCCTT-CCCTTCCEEECCSSC-CCEECHHH
T ss_pred CCCCCCCCCCC----------------CHHCCCCCCCEEECCCCC-CCCCCCCCC-CCCCCCCEEECCCCC-CCCCCHHH
T ss_conf 21267665781----------------012237822389887983-411476545-687656877765684-45549656
Q ss_pred HHHHCCCCC--EEECCCCC--CCCCCCCCCCCCCEEEECCC
Q ss_conf 998288665--88145788--88812349998649980478
Q 001704 447 IALSCANLR--ILNSSYCP--NISLESVRLPMLTVLQLHSC 483 (1024)
Q Consensus 447 l~~~~~~L~--~L~L~~~~--~l~~~~~~~~~L~~L~L~~~ 483 (1024)
+. .+++|+ .|++++|. .++......+.|+.|++.++
T Consensus 173 ~~-~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~ 212 (606)
T 3t6q_A 173 MS-SLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGT 212 (606)
T ss_dssp HH-TTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTC
T ss_pred HH-HHCCCCEEEEECCCCCCCCCCHHHHHHCCCCCCCCCCC
T ss_conf 33-22156403896679814754866730010013556772
No 7
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=1.00 E-value=1 Score=295.28 Aligned_cols=202 Identities=14% Similarity=0.072 Sum_probs=134.1
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 99309997289712599999985099998998458534458899602999987999328878887322143587631998
Q 001704 287 PNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLE 366 (1024)
Q Consensus 287 ~~l~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~i~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~ 366 (1024)
++++.|++++ +.+....+.+|..+++|+.|++++|.+.+..+..|..+++|++|++++|.+....+..+..+++|++|+
T Consensus 32 ~~l~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 110 (606)
T 3vq2_A 32 SSTKNIDLSF-NPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLV 110 (606)
T ss_dssp TTCCEEECTT-SCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEE
T ss_pred CCCCEEECCC-CCCCEECHHHCCCCCCCCEEECCCCCCCCCCHHHHHCHHHCCEEECCCCCCCCCCHHHCCCCCCCCEEE
T ss_conf 8767887888-975773754555776674886887736643977730601068867879856304852207865378887
Q ss_pred ECCCCCCHHCCCCCCCCEECCCCCCHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCEEEECCCCCCCHHH---
Q ss_conf 10663300123599884010358548999726998339988178999958999998149987779825887689489---
Q 001704 367 ITKCRVMRVSIRCPQLEHLSLKRSNMAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDES--- 443 (1024)
Q Consensus 367 L~~~~~~~l~~~~~~L~~L~L~~~~l~~~~~~~~~L~~L~L~~~~~i~~~~l~~~~~~~~~L~~L~L~~~~~i~~~~--- 443 (1024)
+++|.+..+.. ..+..+++|++|++++|. ++...++..+..+++|++|++++|. ++...
T Consensus 111 L~~n~l~~~~~----------------~~~~~l~~L~~L~L~~n~-l~~~~lp~~~~~l~~L~~L~Ls~n~-l~~~~~~~ 172 (606)
T 3vq2_A 111 AVETKLASLES----------------FPIGQLITLKKLNVAHNF-IHSCKLPAYFSNLTNLVHVDLSYNY-IQTITVND 172 (606)
T ss_dssp CTTSCCCCSSS----------------SCCTTCTTCCEEECCSSC-CCCCCCCGGGGTCTTCCEEECCSSC-CCEECTTT
T ss_pred CCCCCCCCCCC----------------CCCCCCCCCCEEECCCCC-CCCEECHHHHHHCCCCCEEECCCCC-CEECCHHH
T ss_conf 03775554451----------------134898877989687885-2325306867326777788766885-31057334
Q ss_pred HHHHHHHCCC-CCEEECCCCC--CCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHCCCCCCEEEECCC
Q ss_conf 9999982886-6588145788--888123499986499804788997047996314999669981389
Q 001704 444 LREIALSCAN-LRILNSSYCP--NISLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNC 508 (1024)
Q Consensus 444 l~~l~~~~~~-L~~L~L~~~~--~l~~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~l~~L~~L~l~~~ 508 (1024)
+..+. .++. +.+|+++++. .++.......+|+.|+++++.......+..+..+..++.+.+...
T Consensus 173 ~~~l~-~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~ 239 (606)
T 3vq2_A 173 LQFLR-ENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILG 239 (606)
T ss_dssp THHHH-HCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEE
T ss_pred HHHHH-CCCCCCCEEECCCCCCCEECCCCCCCCEEEEEECCCCCCCHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 12120-34200243004689753257110567604335246785616677888602665652314111
No 8
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=1.00 E-value=1 Score=294.34 Aligned_cols=119 Identities=21% Similarity=0.378 Sum_probs=74.6
Q ss_pred CCCCHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCHH--
Q ss_conf 158499999998039-98879999997497999530998640022477877888899997318993099972897125--
Q 001704 225 MDLTDDLLHMVFSFL-DYVDLCRAAIVCRQWRAASAHEDFWRCLNFENRKISVEQFEDVCQRYPNATEVNIYGAPAIH-- 301 (1024)
Q Consensus 225 ~~LP~eil~~If~~L-~~~dl~~~~~Vck~W~~~~~~~~~~~~l~l~~~~~~~~~l~~l~~~~~~l~~L~l~~~~~~~-- 301 (1024)
..||||+|.+||+|| +.+|+.++++|||+|+.+... .++.+.+.. ........+..+++++++|+++++....
T Consensus 14 ~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~~~--~~~~l~~~~--~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~ 89 (592)
T 3ogk_B 14 VATVDDVIEQVMTYITDPKDRDSASLVCRRWFKIDSE--TREHVTMAL--CYTATPDRLSRRFPNLRSLKLKGKPRAAMF 89 (592)
T ss_dssp CCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHHHH--HCCEEEESC--GGGSCHHHHHHHCTTCSEEEEECSCGGGGG
T ss_pred CCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHC--CCCEEEEEE--CCCCCHHHHHHHCCCCEEEEECCCCCHHHC
T ss_conf 7899999999997659988999999873899985531--156788762--254686999976899728982487533220
Q ss_pred ------------HHHHHHHHCCCCCCEEECCCCCCCHHHHHHHCC-CCC-CCEEEECCCC
Q ss_conf ------------999999850999989984585344588996029-999-8799932887
Q 001704 302 ------------LLVMKAVSLLRNLEALTLGRGQLGDAFFHALAD-CSM-LKSLNVNDAT 347 (1024)
Q Consensus 302 ------------~~~~~~l~~~~~L~~L~L~~~~i~~~~~~~l~~-~~~-L~~L~L~~~~ 347 (1024)
.........+++|+.|+++++.+++..+..+.. +++ |++|++++|.
T Consensus 90 ~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~ 149 (592)
T 3ogk_B 90 NLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCS 149 (592)
T ss_dssp TCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCE
T ss_pred CCCCCCCCCCCHHHHHHHHHHCCCCCEEEEECCEECHHHHHHHHHHCCCCCCEEECCCCC
T ss_conf 555644334232899999964889886971131766999999997420267699786789
No 9
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=1.00 E-value=1 Score=285.51 Aligned_cols=175 Identities=15% Similarity=0.093 Sum_probs=87.3
Q ss_pred CCCEEECCCCCCCHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEECCCCCCHHCCCCCCCCEECCCCCCH
Q ss_conf 99899845853445889960299998799932887888732214358763199810663300123599884010358548
Q 001704 313 NLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSIRCPQLEHLSLKRSNM 392 (1024)
Q Consensus 313 ~L~~L~L~~~~i~~~~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~L~~L~L~~~~l 392 (1024)
+++.|++++|.++...+..|..+++|++|++++|.+....+..+..+++|++|++++|.+..+..
T Consensus 34 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--------------- 98 (606)
T 3t6q_A 34 STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAE--------------- 98 (606)
T ss_dssp TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECT---------------
T ss_pred CCCEEECCCCCCCCCCHHHHCCCCCCEEEECCCCCCCEECHHHCCCCCCCCEEECCCCCCCCCCH---------------
T ss_conf 67589815873471796672567665289788983552485113684336764488985654586---------------
Q ss_pred HHHHHCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCC
Q ss_conf 99972699833998817899995899999814998777982588768948999999828866588145788888123499
Q 001704 393 AQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCPNISLESVRL 472 (1024)
Q Consensus 393 ~~~~~~~~~L~~L~L~~~~~i~~~~l~~~~~~~~~L~~L~L~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~l~~~~~~~ 472 (1024)
..+..+++|++|++.+|. ++... +..+..+++|++|++++|. +....+ .....+
T Consensus 99 -~~~~~l~~L~~L~L~~n~-i~~l~-~~~~~~l~~L~~L~L~~n~-l~~~~~----------------------~~~~~l 152 (606)
T 3t6q_A 99 -TALSGPKALKHLFFIQTG-ISSID-FIPLHNQKTLESLYLGSNH-ISSIKL----------------------PKGFPT 152 (606)
T ss_dssp -TTTSSCTTCCEEECTTSC-CSCGG-GSCCTTCTTCCEEECCSSC-CCCCCC----------------------CTTCCC
T ss_pred -HHHCCCCCCCEEECCCCC-CCCCC-CCHHCCCCCCCEEECCCCC-CCCCCC----------------------CCCCCC
T ss_conf -552344215376521267-66578-1012237822389887983-411476----------------------545687
Q ss_pred CCCCEEEECCCCCCCHHHHHHHHCCCCCC--EEEECCCCCCCCCCCCC--CCCCEEEECCC
Q ss_conf 98649980478899704799631499966--99813898872124558--76755753355
Q 001704 473 PMLTVLQLHSCEGITSASMAAISHSYMLE--VLELDNCNLLTSVSLEL--PRLQNIRLVHC 529 (1024)
Q Consensus 473 ~~L~~L~L~~~~~i~~~~~~~l~~l~~L~--~L~l~~~~~~~~~~~~l--~~L~~L~l~~~ 529 (1024)
++|++|+++++ .+....+..++.+.+|+ .+++++|...+..+..+ ..|+.+.+..+
T Consensus 153 ~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~ 212 (606)
T 3t6q_A 153 EKLKVLDFQNN-AIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGT 212 (606)
T ss_dssp TTCCEEECCSS-CCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTC
T ss_pred CCCCEEECCCC-CCCCCCHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHCCCCCCCCCCC
T ss_conf 65687776568-4455496563322156403896679814754866730010013556772
No 10
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=280.63 Aligned_cols=489 Identities=17% Similarity=0.168 Sum_probs=242.1
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCCCCEEECCCCCCCHH-HHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCE
Q ss_conf 899309997289712599999985099998998458534458-8996029999879993288788873221435876319
Q 001704 286 YPNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDA-FFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRR 364 (1024)
Q Consensus 286 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~i~~~-~~~~l~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~ 364 (1024)
.++++.|++++ +.+....+..|..+++|+.|++++|..... .+..+.++++|+.|++++|.+....+..+..+.+|++
T Consensus 23 p~~l~~LdLs~-N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 101 (844)
T 3j0a_A 23 LNTTERLLLSF-NYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFE 101 (844)
T ss_dssp CTTCCEEEEES-CCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCC
T ss_pred CCCCCEEECCC-CCCCCCCHHHCCCCCCCEEEECCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHCCCCCCCCE
T ss_conf 99868888877-86783296677662137088678997744419778537877888879899585319767157866587
Q ss_pred EEECCCCCCHH------CCCCCCCCEECCCCCCHH-----HHHHCCCCCCEEEEECCCCCCH---HHHHHHHHCCCCCCE
Q ss_conf 98106633001------235998840103585489-----9972699833998817899995---899999814998777
Q 001704 365 LEITKCRVMRV------SIRCPQLEHLSLKRSNMA-----QAVLNCPLLHLLDIASCHKLSD---AAIRLAATSCPQLES 430 (1024)
Q Consensus 365 L~L~~~~~~~l------~~~~~~L~~L~L~~~~l~-----~~~~~~~~L~~L~L~~~~~i~~---~~l~~~~~~~~~L~~ 430 (1024)
|++++|.+... ...+++|++|++++|.+. ..+..+++|++|++++|. ++. ..+.... . ++|+.
T Consensus 102 L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~-i~~~~~~~l~~l~-~-~~L~~ 178 (844)
T 3j0a_A 102 LRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQ-IFLVCEHELEPLQ-G-KTLSF 178 (844)
T ss_dssp EECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSC-CCCCCSGGGHHHH-H-CSSCC
T ss_pred EECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHHHCCCCCEEECCCCC-CCEECHHHCCCCC-C-CCCCE
T ss_conf 0176788973404676455667999888987864232566557638898989898984-7766788753556-7-75035
Q ss_pred EEECCCCCCCHHHHHHHHHHCC------CCCEEECCCCC---CCCCCC---CCCCCCCEEEECCC--------CCCCHHH
Q ss_conf 9825887689489999998288------66588145788---888123---49998649980478--------8997047
Q 001704 431 LDMSNCSCVSDESLREIALSCA------NLRILNSSYCP---NISLES---VRLPMLTVLQLHSC--------EGITSAS 490 (1024)
Q Consensus 431 L~L~~~~~i~~~~l~~l~~~~~------~L~~L~L~~~~---~l~~~~---~~~~~L~~L~L~~~--------~~i~~~~ 490 (1024)
|+++.+. +.......+. .++ .|+.|++++|. ..+..+ ...+.+..+.+..+ ..+....
T Consensus 179 L~L~~n~-l~~~~~~~~~-~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~ 256 (844)
T 3j0a_A 179 FSLAANS-LYSRVSVDWG-KCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPD 256 (844)
T ss_dssp CEECCSB-SCCCCCCCCC-SSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGG
T ss_pred EECCCCC-CCCCCCCCHH-HCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCCCCCCCC
T ss_conf 7897886-6655455332-2377223574007965788686567788876427441001121212234664445668898
Q ss_pred HHHHHC--CCCCCEEEECCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCC
Q ss_conf 996314--999669981389887212455876755753355553001112223341114466445330224541111100
Q 001704 491 MAAISH--SYMLEVLELDNCNLLTSVSLELPRLQNIRLVHCRKFADLNLRAMMLSSIMVSNCAALHRINITSNSLQKLSL 568 (1024)
Q Consensus 491 ~~~l~~--l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~l~~~~l~~~~l~~~~~L~~L~l~~n~l~~~~~ 568 (1024)
...+.. .++|+.|+++++......+. .+..+++|+.+++++|.+.+...
T Consensus 257 ~~~f~~l~~~~L~~L~Ls~n~l~~~~~~-----------------------------~~~~l~~L~~L~L~~n~i~~~~~ 307 (844)
T 3j0a_A 257 QNTFAGLARSSVRHLDLSHGFVFSLNSR-----------------------------VFETLKDLKVLNLAYNKINKIAD 307 (844)
T ss_dssp GTTTTTTTTSCCCEEECTTCCCCEECSC-----------------------------CSSSCCCCCEEEEESCCCCEECT
T ss_pred HHHHHCCCCCCCCEEECCCCCCCCCCHH-----------------------------HHHCCCCCCEEECCCCCCCCCCH
T ss_conf 5565255547861898979945515863-----------------------------45258999999897981898796
Q ss_pred CCHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHCCCCCCCCCCEEECCCCCCCCEECC----CCCCCCEEECCCCCCC
Q ss_conf 000128999974675529943578474023344301889999856895458989851011----1576552414467454
Q 001704 569 QKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVVRF----CSTSLVSLSLVGCRAI 644 (1024)
Q Consensus 569 ~~~~~l~~l~~~~~~L~~L~Ls~c~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~----~~~~l~~l~l~~~~~l 644 (1024)
..+. .+++|+.|++++| .++...+..+ ..+++|+.|++++|. ++.+.. ...+++.+++.++ .+
T Consensus 308 ~~~~-------~l~~L~~L~Ls~N-~l~~~~~~~~---~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~Ls~N-~l 374 (844)
T 3j0a_A 308 EAFY-------GLDNLQVLNLSYN-LLGELYSSNF---YGLPKVAYIDLQKNH-IAIIQDQTFKFLEKLQTLDLRDN-AL 374 (844)
T ss_dssp TTTT-------TCSSCCEEEEESC-CCSCCCSCSC---SSCTTCCEEECCSCC-CCCCCSSCSCSCCCCCEEEEETC-CS
T ss_pred HHHC-------CCCCCCEEECCCC-CCCCCCHHHH---CCCCCCCEEECCCCC-CCCCCHHHHCCCCCCCEEECCCC-CC
T ss_conf 8836-------8889998989899-7885187884---689999989898998-77628666137888999889899-77
Q ss_pred CCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCEEEEEECCCCCC--CCCCCCCCCCEEEC
Q ss_conf 2022248975489817888710235444444355226777763112123421499650556657--43447976628824
Q 001704 645 TALELKCPILEKVCLDGCDHIESASFVPVALQSLNLGICPKLSTLGIEALHMVVLELKGCGVLS--DAYINCPLLTSLDA 722 (1024)
Q Consensus 645 ~~l~~~~~~L~~L~l~~c~~l~~~~~~p~~L~~l~l~~~~~L~~L~l~~~~l~~l~l~~~~~l~--~~~~~~~~L~~L~l 722 (1024)
..+.. ++.|+.+.++++... . +| .....++.++++.|.+. .++ ..+..+++|+.|++
T Consensus 375 ~~i~~-~~~L~~L~l~~N~l~-~---l~--------~~~~~l~~L~ls~N~l~--------~l~~~~~~~~l~~L~~L~L 433 (844)
T 3j0a_A 375 TTIHF-IPSIPDIFLSGNKLV-T---LP--------KINLTANLIHLSENRLE--------NLDILYFLLRVPHLQILIL 433 (844)
T ss_dssp CCCSS-CCSCSEEEEESCCCC-C---CC--------CCCTTCCEEECCSCCCC--------SSTTHHHHTTCTTCCEEEE
T ss_pred CCCCC-CCCCCHHCCCCCCCC-C---CC--------CCCCCCCEEECCCCCCC--------CCCHHHHHHCCCCCCEEEC
T ss_conf 86168-898232005899723-1---45--------54554312214567534--------5755666512776666667
Q ss_pred CCCCCCCHHHHHHHHHCCCCCCEEEECCCCCCC----CHHHHHHCCCCCCCEEECCCCCCCCCHH-HHHCCCCCCEEEEC
Q ss_conf 567897133376542049996699712588879----2256620049987989538973479236-64138987699823
Q 001704 723 SFCSQLKDDCLSATTTSCPLIESLILMSCQSIG----PDGLYSLRSLQNLTMLDLSYTFLTNLEP-VFESCLQLKVLKLQ 797 (1024)
Q Consensus 723 ~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~~~----~~~~~~l~~l~~L~~L~Ls~~~l~~l~~-~~~~~~~L~~L~l~ 797 (1024)
++| .++.......+..+++|+.|++++|.... ...+..+..+++|+.|++++|.+.++++ .+..+++|+.|+++
T Consensus 434 s~N-~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 512 (844)
T 3j0a_A 434 NQN-RFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLN 512 (844)
T ss_dssp ESC-CCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEE
T ss_pred CCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHCCCHHHHHEEECC
T ss_conf 787-1255554333566873100247777364410135535554475536577788985655395570450122156999
Q ss_pred CCCCCCHHHHHHHHHCCCCCCCCEEECCCCCCCHHHHHHHHHHCCCCCEEEECCCCC
Q ss_conf 787863021475661399999729848998554579999995199612998069788
Q 001704 798 ACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELLAYCTHLTHVSLNGCGN 854 (1024)
Q Consensus 798 ~c~~l~~~~~~~l~~~~~l~~L~~L~ls~n~l~~~~~~~~l~~~~~L~~L~l~~c~~ 854 (1024)
+|. ++......+ .++|+.|++++|.+.+. ++ ..+.+|+.|++.+|+.
T Consensus 513 ~N~-l~~l~~~~~-----~~~L~~L~Ls~N~l~~~-~~---~~~~~L~~l~l~~Np~ 559 (844)
T 3j0a_A 513 SNR-LTVLSHNDL-----PANLEILDISRNQLLAP-NP---DVFVSLSVLDITHNKF 559 (844)
T ss_dssp SCC-CSSCCCCCC-----CSCCCEEEEEEECCCCC-CS---CCCSSCCEEEEEEECC
T ss_pred CCC-CCCCCHHHH-----HCCCCEEECCCCCCCCC-CH---HHHCCCCEEEECCCCC
T ss_conf 997-874571011-----00455888988847888-96---6837768899319970
Done!