BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 001705
         (1024 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2R60|A Chain A, Structure Of Apo Sucrose Phosphate Synthase (Sps) Of
           Halothermothrix Orenii
 pdb|2R66|A Chain A, Complex Structure Of Sucrose Phosphate Synthase (Sps)-F6p
           Of Halothermothrix Orenii
 pdb|2R68|A Chain A, Complex Structure Of Sucrose Phosphate Synthase (Sps)-S6p
           Of Halothermothrix Orenii
          Length = 499

 Score =  187 bits (474), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 161/492 (32%), Positives = 229/492 (46%), Gaps = 72/492 (14%)

Query: 193 DTGGQVKYVVELARALANTEGVYRVDLLTRQIA-------SPEVDSSYGEPNEMLSCPSD 245
           D GGQ+ YV E++ ALA   GV +VD++TR+I        S E+D  Y E N++      
Sbjct: 31  DFGGQLVYVKEVSLALAEM-GV-QVDIITRRIKDENWPEFSGEIDY-YQETNKVR----- 82

Query: 246 GTGSCGAYIIRIPCGARDKYIAKESLWPYIHEFVDGALNHIVNMARAIGEQVNGGKPTWP 305
                   I+RIP G  DK++ KE LWPY+HE+V    N I+N  R  G+        +P
Sbjct: 83  --------IVRIPFGG-DKFLPKEELWPYLHEYV----NKIINFYREEGK--------FP 121

Query: 306 YVIHGHYADAGEVAAHLSGALNVPMVLTGHSLGRNKFEQLLKQGRLPKDINASYKIMRRI 365
            V+  HY D G     L     +P   TGHSLG  K E+L       K+++  +K  RRI
Sbjct: 122 QVVTTHYGDGGLAGVLLKNIKGLPFTFTGHSLGAQKMEKLNVNTSNFKEMDERFKFHRRI 181

Query: 366 EAEELGLDASEMVVTSTRQEIEMQWGLYDGFDLKLERKLRVRRQRGVSCFGRFMPRMVVI 425
            AE L +  ++ ++ ST QE   ++G Y   DL        R    V    +F     VI
Sbjct: 182 IAERLTMSYADKIIVSTSQE---RFGQY-SHDL-------YRGAVNVEDDDKFS----VI 226

Query: 426 PPGMDFSYVTTQDTMGGDTDLKSLIGNDRTQSKRNLPPMWSEVMRFFTNPHKPTILALSR 485
           PPG++       D   GD  +K+ I      +K     + SE M        P I+A SR
Sbjct: 227 PPGVN---TRVFDGEYGDK-IKAKI------TKYLERDLGSERMEL------PAIIASSR 270

Query: 486 PDPKKNVTTLLKAFGECQPLRELANMTLIL-GNRDDIEDMSNXXXXXXXXXXK---LIDK 541
            D KKN   L++A+ + + L++ AN+ L L G  +  ED S           K   LID 
Sbjct: 271 LDQKKNHYGLVEAYVQNKELQDKANLVLTLRGIENPFEDYSRAGQEEKEILGKIIELIDN 330

Query: 542 YDLYGQVAYPKHHKQSDVPDIYRLAAKTKGVFINPALVEPFGLTIIEAAAYGLPVVATKN 601
            D  G+V+    + Q ++   Y   A    VF   +  EPFGL  +EA A GLP V T+N
Sbjct: 331 NDCRGKVSMFPLNSQQELAGCYAYLASKGSVFALTSFYEPFGLAPVEAMASGLPAVVTRN 390

Query: 602 GGPVDILKALNNGLLVDPHDQNXXXXXXXXXXXXXNMWSECRKNGLKNI-HRFSWPEHCR 660
           GGP +IL     G+LVDP D                 WS  ++ G + +  R++W E  R
Sbjct: 391 GGPAEILDGGKYGVLVDPEDPEDIARGLLKAFESEETWSAYQEKGKQRVEERYTWQETAR 450

Query: 661 NYLSHVEHSRNR 672
            YL  ++   +R
Sbjct: 451 GYLEVIQEIADR 462


>pdb|3S28|A Chain A, The Crystal Structure Of Sucrose Synthase-1 In Complex
           With A Breakdown Product Of The Udp-Glucose
 pdb|3S28|B Chain B, The Crystal Structure Of Sucrose Synthase-1 In Complex
           With A Breakdown Product Of The Udp-Glucose
 pdb|3S28|C Chain C, The Crystal Structure Of Sucrose Synthase-1 In Complex
           With A Breakdown Product Of The Udp-Glucose
 pdb|3S28|D Chain D, The Crystal Structure Of Sucrose Synthase-1 In Complex
           With A Breakdown Product Of The Udp-Glucose
 pdb|3S28|E Chain E, The Crystal Structure Of Sucrose Synthase-1 In Complex
           With A Breakdown Product Of The Udp-Glucose
 pdb|3S28|F Chain F, The Crystal Structure Of Sucrose Synthase-1 In Complex
           With A Breakdown Product Of The Udp-Glucose
 pdb|3S28|G Chain G, The Crystal Structure Of Sucrose Synthase-1 In Complex
           With A Breakdown Product Of The Udp-Glucose
 pdb|3S28|H Chain H, The Crystal Structure Of Sucrose Synthase-1 In Complex
           With A Breakdown Product Of The Udp-Glucose
 pdb|3S29|A Chain A, The Crystal Structure Of Sucrose Synthase-1 From
           Arabidopsis Thaliana And Its Functional Implications.
 pdb|3S29|B Chain B, The Crystal Structure Of Sucrose Synthase-1 From
           Arabidopsis Thaliana And Its Functional Implications.
 pdb|3S29|C Chain C, The Crystal Structure Of Sucrose Synthase-1 From
           Arabidopsis Thaliana And Its Functional Implications.
 pdb|3S29|D Chain D, The Crystal Structure Of Sucrose Synthase-1 From
           Arabidopsis Thaliana And Its Functional Implications.
 pdb|3S29|E Chain E, The Crystal Structure Of Sucrose Synthase-1 From
           Arabidopsis Thaliana And Its Functional Implications.
 pdb|3S29|F Chain F, The Crystal Structure Of Sucrose Synthase-1 From
           Arabidopsis Thaliana And Its Functional Implications.
 pdb|3S29|G Chain G, The Crystal Structure Of Sucrose Synthase-1 From
           Arabidopsis Thaliana And Its Functional Implications.
 pdb|3S29|H Chain H, The Crystal Structure Of Sucrose Synthase-1 From
           Arabidopsis Thaliana And Its Functional Implications
          Length = 816

 Score =  150 bits (379), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 142/532 (26%), Positives = 235/532 (44%), Gaps = 87/532 (16%)

Query: 172 IVLISMHGLVRGDNMEIGRDSDTGGQVKYVVELARALA-------NTEGVY---RVDLLT 221
           +V++S HG    DN+ +G   DTGGQV Y+++  RAL          +G+    R+ +LT
Sbjct: 281 VVILSPHGYFAQDNV-LGY-PDTGGQVVYILDQVRALEIEMLQRIKQQGLNIKPRILILT 338

Query: 222 RQIASPEVDSSYGEPNEMLSCPSDGTGSCGAYIIRIPC----GARDKYIAKESLWPYIHE 277
           R +    V ++ GE  E +      +  C   I+R+P     G   K+I++  +WPY+  
Sbjct: 339 RLLPDA-VGTTCGERLERVY----DSEYCD--ILRVPFRTEKGIVRKWISRFEVWPYLET 391

Query: 278 FVDGALNHIVNMARAIGEQVNGGKPTWPYVIHGHYADAGEVAAHLSGALNVPMVLTGHSL 337
           + + A       A  + +++NG     P +I G+Y+D   VA+ L+  L V      H+L
Sbjct: 392 YTEDA-------AVELSKELNGK----PDLIIGNYSDGNLVASLLAHKLGVTQCTIAHAL 440

Query: 338 GRNKFEQLLKQGRLPKDINASYKIMRRIEAEELGLDASEMVVTSTRQEIEM------QWG 391
            + K+          K ++  Y    +  A+   ++ ++ ++TST QEI        Q+ 
Sbjct: 441 EKTKYPD---SDIYWKKLDDKYHFSCQFTADIFAMNHTDFIITSTFQEIAGSKETVGQYE 497

Query: 392 LYDGFDLKLERKLRVRRQRGVSCFGRFMPRMVVIPPGMDFSYVTTQDTMGGDTDLKSLIG 451
            +  F L           R V     F P+  ++ PG D S                 I 
Sbjct: 498 SHTAFTLP-------GLYRVVHGIDVFDPKFNIVSPGADMS-----------------IY 533

Query: 452 NDRTQSKRNLPPMWSEV-------------MRFFTNPHKPTILALSRPDPKKNVTTLLKA 498
              T+ KR L    SE+             +    +  KP +  ++R D  KN++ L++ 
Sbjct: 534 FPYTEEKRRLTKFHSEIEELLYSDVENKEHLCVLKDKKKPILFTMARLDRVKNLSGLVEW 593

Query: 499 FGECQPLRELANMTLILGNRDDIEDMSNXXXXXXXXXXKLIDKYDLYGQVAY-PKHHKQS 557
           +G+   LRELAN+ ++ G+R   E   N           LI++Y L GQ  +      + 
Sbjct: 594 YGKNTRLRELANLVVVGGDRRK-ESKDNEEKAEMKKMYDLIEEYKLNGQFRWISSQMDRV 652

Query: 558 DVPDIYRLAAKTKGVFINPALVEPFGLTIIEAAAYGLPVVATKNGGPVDILKALNNGLLV 617
              ++YR    TKG F+ PAL E FGLT++EA   GLP  AT  GGP +I+    +G  +
Sbjct: 653 RNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIVHGKSGFHI 712

Query: 618 DPH--DQ--NXXXXXXXXXXXXXNMWSECRKNGLKNI-HRFSWPEHCRNYLS 664
           DP+  DQ  +             + W E  K GL+ I  +++W  + +  L+
Sbjct: 713 DPYHGDQAADTLADFFTKCKEDPSHWDEISKGGLQRIEEKYTWQIYSQRLLT 764


>pdb|3S27|A Chain A, The Crystal Structure Of Sucrose Synthase-1 From
           Arabidopsis Thaliana And Its Functional Implications.
 pdb|3S27|B Chain B, The Crystal Structure Of Sucrose Synthase-1 From
           Arabidopsis Thaliana And Its Functional Implications.
 pdb|3S27|C Chain C, The Crystal Structure Of Sucrose Synthase-1 From
           Arabidopsis Thaliana And Its Functional Implications.
 pdb|3S27|D Chain D, The Crystal Structure Of Sucrose Synthase-1 From
           Arabidopsis Thaliana And Its Functional Implications.
 pdb|3S27|E Chain E, The Crystal Structure Of Sucrose Synthase-1 From
           Arabidopsis Thaliana And Its Functional Implications.
 pdb|3S27|F Chain F, The Crystal Structure Of Sucrose Synthase-1 From
           Arabidopsis Thaliana And Its Functional Implications.
 pdb|3S27|G Chain G, The Crystal Structure Of Sucrose Synthase-1 From
           Arabidopsis Thaliana And Its Functional Implications.
 pdb|3S27|H Chain H, The Crystal Structure Of Sucrose Synthase-1 From
           Arabidopsis Thaliana And Its Functional Implications
          Length = 816

 Score =  147 bits (372), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 142/524 (27%), Positives = 242/524 (46%), Gaps = 71/524 (13%)

Query: 172 IVLISMHGLVRGDNMEIGRDSDTGGQVKYVVELARALA-------NTEGVY---RVDLLT 221
           +V++S HG    DN+ +G   DTGGQV Y+++  RAL          +G+    R+ +LT
Sbjct: 281 VVILSPHGYFAQDNV-LGY-PDTGGQVVYILDQVRALEIEXLQRIKQQGLNIKPRILILT 338

Query: 222 RQIASPEVDSSYGEPNEMLSCPSDGTGSCGAYIIRIPC----GARDKYIAKESLWPYIHE 277
           R +    V ++ GE  E +      +  C   I+R+P     G   K+I++  +WPY+  
Sbjct: 339 RLLPDA-VGTTCGERLERVY----DSEYCD--ILRVPFRTEKGIVRKWISRFEVWPYLET 391

Query: 278 FVDGALNHIVNMARAIGEQVNGGKPTWPYVIHGHYADAGEVAAHLSGALNVPMVLTGHSL 337
           + + A       A  + +++NG     P +I G+Y+D   VA+ L+  L V      H+L
Sbjct: 392 YTEDA-------AVELSKELNGK----PDLIIGNYSDGNLVASLLAHKLGVTQCTIAHAL 440

Query: 338 GRNKFEQLLKQGRLPKDINASYKIMRRIEAEELGLDASEMVVTSTRQEIEM------QWG 391
            + K+          K ++  Y    +  A+    + ++ ++TST QEI        Q+ 
Sbjct: 441 EKTKYPD---SDIYWKKLDDKYHFSCQFTADIFAXNHTDFIITSTFQEIAGSKETVGQYE 497

Query: 392 LYDGFDLKLERKLRVRRQRGVSCFGRFMPRMVVIPPGMD----FSYVTTQDTMGG-DTDL 446
            +  F L           R V     F P+  ++ PG D    F Y   +  +    +++
Sbjct: 498 SHTAFTLP-------GLYRVVHGIDVFDPKFNIVSPGADXSIYFPYTEEKRRLTKFHSEI 550

Query: 447 KSLIGNDRTQSKRNLPPMWSEVMRFFTNPHKPTILALSRPDPKKNVTTLLKAFGECQPLR 506
           + L+ +D  ++K +L  +         +  KP +   +R D  KN++ L++ +G+   LR
Sbjct: 551 EELLYSD-VENKEHLCVL--------KDKKKPILFTXARLDRVKNLSGLVEWYGKNTRLR 601

Query: 507 ELANMTLILGNRDDIEDMSNXXXXXXXXXXKLIDKYDLYGQVAY-PKHHKQSDVPDIYRL 565
           ELAN+ ++ G+R   E   N           LI++Y L GQ  +      +    ++YR 
Sbjct: 602 ELANLVVVGGDRRK-ESKDNEEKAEXKKXYDLIEEYKLNGQFRWISSQXDRVRNGELYRY 660

Query: 566 AAKTKGVFINPALVEPFGLTIIEAAAYGLPVVATKNGGPVDILKALNNGLLVDPH--DQ- 622
              TKG F+ PAL E FGLT++EA   GLP  AT  GGP +I+    +G  +DP+  DQ 
Sbjct: 661 ICDTKGAFVQPALYEAFGLTVVEAXTCGLPTFATCKGGPAEIIVHGKSGFHIDPYHGDQA 720

Query: 623 -NXXXXXXXXXXXXXNMWSECRKNGLKNI-HRFSWPEHCRNYLS 664
            +             + W E  K GL+ I  +++W  + +  L+
Sbjct: 721 ADTLADFFTKCKEDPSHWDEISKGGLQRIEEKYTWQIYSQRLLT 764


>pdb|3C4Q|A Chain A, Structure Of The Retaining Glycosyltransferase Msha : The
           First Step In Mycothiol Biosynthesis. Organism :
           Corynebacterium Glutamicum- Complex With Udp
 pdb|3C4Q|B Chain B, Structure Of The Retaining Glycosyltransferase Msha : The
           First Step In Mycothiol Biosynthesis. Organism :
           Corynebacterium Glutamicum- Complex With Udp
 pdb|3C4V|A Chain A, Structure Of The Retaining Glycosyltransferase Msha:the
           First Step In Mycothiol Biosynthesis. Organism:
           Corynebacterium Glutamicum : Complex With Udp And
           1l-Ins-1- P.
 pdb|3C4V|B Chain B, Structure Of The Retaining Glycosyltransferase Msha:the
           First Step In Mycothiol Biosynthesis. Organism:
           Corynebacterium Glutamicum : Complex With Udp And
           1l-Ins-1- P
          Length = 426

 Score = 48.5 bits (114), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 107/497 (21%), Positives = 185/497 (37%), Gaps = 117/497 (23%)

Query: 170 LYIVLISMHGLVRGDNMEIGRDSDTGGQVKYVVELARALANTEGVYRVDLLTRQIASPEV 229
           + + +ISMH       ++     D+GG   Y++  A  LA  +G+  VD+ TR       
Sbjct: 1   MRVAMISMHT----SPLQQPGTGDSGGMNVYILSTATELAK-QGI-EVDIYTRA------ 48

Query: 230 DSSYGEPNEMLSCPSDGTGSCGAYIIRIPCGARDKY--IAKESLWPYIHEFVDGALNHIV 287
                      + PS G     A  +R+   A   Y  ++KE L   +  F  G L+   
Sbjct: 49  -----------TRPSQGEIVRVAENLRVINIAAGPYEGLSKEELPTQLAAFTGGMLSFTR 97

Query: 288 NMARAIGEQVNGGKPTWPYVIHGHYADAGEVAAHLSGALNVPMVLTGHSLG--RNKFEQL 345
                  E+V         +IH HY  +G+V   L     +P++ T H+L   +N +   
Sbjct: 98  R------EKVTYD------LIHSHYWLSGQVGWLLRDLWRIPLIHTAHTLAAVKNSYRD- 144

Query: 346 LKQGRLPKDINASYKIMRRIEAEELGLDASEMVVTSTRQEIEMQWGLYDGFDLKLERKLR 405
                   D +      RRI  ++L +D ++++  +T++E++     YD           
Sbjct: 145 --------DSDTPESEARRICEQQL-VDNADVLAVNTQEEMQDLMHHYDADP-------- 187

Query: 406 VRRQRGVSCFGRFMPRMVVIPPGMDFSYVTTQDTMGGDTDLKSLIGNDRT--QSKRNLP- 462
                          R+ V+ PG D    +               GNDR   +S+R L  
Sbjct: 188 --------------DRISVVSPGADVELYSP--------------GNDRATERSRRELGI 219

Query: 463 PMWSEVMRFFTNPHKPTILALSRPDPKKNVTTLLKAFGEC---QPLRELANMTLILGNRD 519
           P+ ++V+ F           + R  P K    L+KA        P R L    +I G   
Sbjct: 220 PLHTKVVAF-----------VGRLQPFKGPQVLIKAVAALFDRDPDRNL--RVIICGG-- 264

Query: 520 DIEDMSNXXXXXXXXXXKLIDKYDLYGQVAYPKHHKQSDVPDIYRLAAKTKGVFINPALV 579
                 +           + ++  +  ++ +      S++  +YR A     +   P+  
Sbjct: 265 -----PSGPNATPDTYRHMAEELGVEKRIRFLDPRPPSELVAVYRAA----DIVAVPSFN 315

Query: 580 EPFGLTIIEAAAYGLPVVATKNGG-PVDILKALNNGLLVDPHDQNXXXXXXXXXXXXXNM 638
           E FGL  +EA A G PV+A + GG P+ + +    GLLVD H  +               
Sbjct: 316 ESFGLVAMEAQASGTPVIAARVGGLPIAVAEG-ETGLLVDGHSPHAWADALATLLDDDET 374

Query: 639 WSECRKNGLKNIHRFSW 655
                ++ +++   FSW
Sbjct: 375 RIRMGEDAVEHARTFSW 391


>pdb|3C48|A Chain A, Structure Of The Retaining Glycosyltransferase Msha: The
           First Step In Mycothiol Biosynthesis. Organism:
           Corynebacterium Glutamicum- Apo (Open) Structure.
 pdb|3C48|B Chain B, Structure Of The Retaining Glycosyltransferase Msha: The
           First Step In Mycothiol Biosynthesis. Organism:
           Corynebacterium Glutamicum- Apo (Open) Structure
          Length = 438

 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 107/498 (21%), Positives = 186/498 (37%), Gaps = 117/498 (23%)

Query: 169 NLYIVLISMHGLVRGDNMEIGRDSDTGGQVKYVVELARALANTEGVYRVDLLTRQIASPE 228
           ++ + +ISMH       ++     D+GG   Y++  A  LA  +G+  VD+ TR      
Sbjct: 20  HMRVAMISMHT----SPLQQPGTGDSGGMNVYILSTATELAK-QGI-EVDIYTRA----- 68

Query: 229 VDSSYGEPNEMLSCPSDGTGSCGAYIIRIPCGARDKY--IAKESLWPYIHEFVDGALNHI 286
                       + PS G     A  +R+   A   Y  ++KE L   +  F  G L+  
Sbjct: 69  ------------TRPSQGEIVRVAENLRVINIAAGPYEGLSKEELPTQLAAFTGGMLSFT 116

Query: 287 VNMARAIGEQVNGGKPTWPYVIHGHYADAGEVAAHLSGALNVPMVLTGHSLG--RNKFEQ 344
                   E+V         +IH HY  +G+V   L     +P++ T H+L   +N +  
Sbjct: 117 RR------EKVTYD------LIHSHYWLSGQVGWLLRDLWRIPLIHTAHTLAAVKNSYRD 164

Query: 345 LLKQGRLPKDINASYKIMRRIEAEELGLDASEMVVTSTRQEIEMQWGLYDGFDLKLERKL 404
                    D +      RRI  ++L +D ++++  +T++E++     YD          
Sbjct: 165 ---------DSDTPESEARRICEQQL-VDNADVLAVNTQEEMQDLMHHYDADP------- 207

Query: 405 RVRRQRGVSCFGRFMPRMVVIPPGMDFSYVTTQDTMGGDTDLKSLIGNDRT--QSKRNLP 462
                           R+ V+ PG D    +               GNDR   +S+R L 
Sbjct: 208 ---------------DRISVVSPGADVELYSP--------------GNDRATERSRRELG 238

Query: 463 -PMWSEVMRFFTNPHKPTILALSRPDPKKNVTTLLKAFGEC---QPLRELANMTLILGNR 518
            P+ ++V+ F           + R  P K    L+KA        P R L    +I G  
Sbjct: 239 IPLHTKVVAF-----------VGRLQPFKGPQVLIKAVAALFDRDPDRNL--RVIICGG- 284

Query: 519 DDIEDMSNXXXXXXXXXXKLIDKYDLYGQVAYPKHHKQSDVPDIYRLAAKTKGVFINPAL 578
                  +           + ++  +  ++ +      S++  +YR A     +   P+ 
Sbjct: 285 ------PSGPNATPDTYRHMAEELGVEKRIRFLDPRPPSELVAVYRAA----DIVAVPSF 334

Query: 579 VEPFGLTIIEAAAYGLPVVATKNGG-PVDILKALNNGLLVDPHDQNXXXXXXXXXXXXXN 637
            E FGL  +EA A G PV+A + GG P+ + +    GLLVD H  +              
Sbjct: 335 NESFGLVAMEAQASGTPVIAARVGGLPIAVAEG-ETGLLVDGHSPHAWADALATLLDDDE 393

Query: 638 MWSECRKNGLKNIHRFSW 655
                 ++ +++   FSW
Sbjct: 394 TRIRMGEDAVEHARTFSW 411


>pdb|3FRO|A Chain A, Crystal Structure Of Pyrococcus Abyssi Glycogen Synthase
           With Open And Closed Conformations
 pdb|3FRO|B Chain B, Crystal Structure Of Pyrococcus Abyssi Glycogen Synthase
           With Open And Closed Conformations
 pdb|3FRO|C Chain C, Crystal Structure Of Pyrococcus Abyssi Glycogen Synthase
           With Open And Closed Conformations
          Length = 439

 Score = 42.0 bits (97), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 79/378 (20%), Positives = 127/378 (33%), Gaps = 77/378 (20%)

Query: 305 PYVIHGHYADAGEVAAHLSGALNVPMVLTGHSLGRNKFEQLLKQGRLPKDINASYKIMRR 364
           P V+H H        A +     +P V T H L ++K            ++ A Y     
Sbjct: 123 PDVVHFHDWHTVFAGALIKKYFKIPAVFTIHRLNKSKLPAFYFHEAGLSEL-APYP---D 178

Query: 365 IEAEELGLDASEMVVTSTRQEIEMQWGLYDGFDLKLERKLRVRRQRGVSCFGRFMPRMVV 424
           I+ E  G   +++V T +R  +  +WG +  F+ K+                        
Sbjct: 179 IDPEHTGGYIADIVTTVSRGYLIDEWGFFRNFEGKI----------------------TY 216

Query: 425 IPPGMDFSYVTTQDTMGGDTDLKSLIGNDRTQSKRNLPPMWSEVMRFFTNPHKPTILALS 484
           +  G+D S+             +S +   R + K++L       +  F      T + + 
Sbjct: 217 VFNGIDCSFWN-----------ESYLTGSRDERKKSL-------LSKFGMDEGVTFMFIG 258

Query: 485 RPD-PKKNVTTLLKAFGECQPLRELANMTLILGNRDDIE------DMSNXXXXXXXXXXK 537
           R D  +K V  LLKA       +E   M  I+  + D E       +             
Sbjct: 259 RFDRGQKGVDVLLKAIEILSSKKEFQEMRFIIIGKGDPELEGWARSLEEKHGNVKVITEM 318

Query: 538 LIDKY--DLYGQVAYPKHHKQSDVPDIYRLAAKTKGVFINPALVEPFGLTIIEAAAYGLP 595
           L  ++  +LYG V +                       I P+  EPFGL  +EA   G  
Sbjct: 319 LSREFVRELYGSVDF----------------------VIIPSYFEPFGLVALEAMCLGAI 356

Query: 596 VVATKNGGPVDILKALNNGLLVDPHDQNXXXXXXXXXXXXXNM-WSECRKNGLKNIHRFS 654
            +A+  GG  DI+     G+LV   D                   S+ R+N  K    FS
Sbjct: 357 PIASAVGGLRDIITN-ETGILVKAGDPGELANAILKALELSRSDLSKFRENCKKRAMSFS 415

Query: 655 WPEHCRNYLSHVEHSRNR 672
           W +    Y+     S +R
Sbjct: 416 WEKSAERYVKAYTGSIDR 433


>pdb|2BIS|A Chain A, Structure Of Glycogen Synthase From Pyrococcus Abyssi
 pdb|2BIS|B Chain B, Structure Of Glycogen Synthase From Pyrococcus Abyssi
 pdb|2BIS|C Chain C, Structure Of Glycogen Synthase From Pyrococcus Abyssi
          Length = 440

 Score = 41.6 bits (96), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 79/378 (20%), Positives = 127/378 (33%), Gaps = 77/378 (20%)

Query: 305 PYVIHGHYADAGEVAAHLSGALNVPMVLTGHSLGRNKFEQLLKQGRLPKDINASYKIMRR 364
           P V+H H        A +     +P V T H L ++K            ++ A Y     
Sbjct: 124 PDVVHFHDWHTVFAGALIKKYFKIPAVFTIHRLNKSKLPAFYFHEAGLSEL-APYP---D 179

Query: 365 IEAEELGLDASEMVVTSTRQEIEMQWGLYDGFDLKLERKLRVRRQRGVSCFGRFMPRMVV 424
           I+ E  G   +++V T +R  +  +WG +  F+ K+                        
Sbjct: 180 IDPEHTGGYIADIVTTVSRGYLIDEWGFFRNFEGKI----------------------TY 217

Query: 425 IPPGMDFSYVTTQDTMGGDTDLKSLIGNDRTQSKRNLPPMWSEVMRFFTNPHKPTILALS 484
           +  G+D S+             +S +   R + K++L       +  F      T + + 
Sbjct: 218 VFNGIDCSFWN-----------ESYLTGSRDERKKSL-------LSKFGMDEGVTFMFIG 259

Query: 485 RPD-PKKNVTTLLKAFGECQPLRELANMTLILGNRDDIE------DMSNXXXXXXXXXXK 537
           R D  +K V  LLKA       +E   M  I+  + D E       +             
Sbjct: 260 RFDRGQKGVDVLLKAIEILSSKKEFQEMRFIIIGKGDPELEGWARSLEEKHGNVKVITEM 319

Query: 538 LIDKY--DLYGQVAYPKHHKQSDVPDIYRLAAKTKGVFINPALVEPFGLTIIEAAAYGLP 595
           L  ++  +LYG V +                       I P+  EPFGL  +EA   G  
Sbjct: 320 LSREFVRELYGSVDF----------------------VIIPSYFEPFGLVALEAMCLGAI 357

Query: 596 VVATKNGGPVDILKALNNGLLVDPHDQNXXXXXXXXXXXXXNM-WSECRKNGLKNIHRFS 654
            +A+  GG  DI+     G+LV   D                   S+ R+N  K    FS
Sbjct: 358 PIASAVGGLRDIITN-ETGILVKAGDPGELANAILKALELSRSDLSKFRENCKKRAMSFS 416

Query: 655 WPEHCRNYLSHVEHSRNR 672
           W +    Y+     S +R
Sbjct: 417 WEKSAERYVKAYTGSIDR 434


>pdb|3L01|A Chain A, Crystal Structure Of Monomeric Glycogen Synthase From
           Pyrococcus Abyssi
 pdb|3L01|B Chain B, Crystal Structure Of Monomeric Glycogen Synthase From
           Pyrococcus Abyssi
          Length = 428

 Score = 41.2 bits (95), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 77/369 (20%), Positives = 124/369 (33%), Gaps = 77/369 (20%)

Query: 305 PYVIHGHYADAGEVAAHLSGALNVPMVLTGHSLGRNKFEQLLKQGRLPKDINASYKIMRR 364
           P V+H H        A +     +P V T H L ++K            ++ A Y     
Sbjct: 123 PDVVHFHDWHTVFAGALIKKYFKIPAVFTIHRLNKSKLPAFYFHEAGLSEL-APYP---D 178

Query: 365 IEAEELGLDASEMVVTSTRQEIEMQWGLYDGFDLKLERKLRVRRQRGVSCFGRFMPRMVV 424
           I+ E  G   +++V T +R  +  +WG +  F+ K+                        
Sbjct: 179 IDPEHTGGYIADIVTTVSRGYLIDEWGFFRNFEGKI----------------------TY 216

Query: 425 IPPGMDFSYVTTQDTMGGDTDLKSLIGNDRTQSKRNLPPMWSEVMRFFTNPHKPTILALS 484
           +  G+D S+             +S +   R + K++L       +  F      T + + 
Sbjct: 217 VFNGIDCSFWN-----------ESYLTGSRDERKKSL-------LSKFGMDEGVTFMFIG 258

Query: 485 RPD-PKKNVTTLLKAFGECQPLRELANMTLILGNRDDIE------DMSNXXXXXXXXXXK 537
           R D  +K V  LLKA       +E   M  I+  + D E       +             
Sbjct: 259 RFDRGQKGVDVLLKAIEILSSKKEFQEMRFIIIGKGDPELEGWARSLEEKHGNVKVITEM 318

Query: 538 LIDKY--DLYGQVAYPKHHKQSDVPDIYRLAAKTKGVFINPALVEPFGLTIIEAAAYGLP 595
           L  ++  +LYG V +                       I P+  EPFGL  +EA   G  
Sbjct: 319 LSREFVRELYGSVDF----------------------VIIPSYFEPFGLVALEAMCLGAI 356

Query: 596 VVATKNGGPVDILKALNNGLLVDPHDQNXXXXXXXXXXXXXNM-WSECRKNGLKNIHRFS 654
            +A+  GG  DI+     G+LV   D                   S+ R+N  K    FS
Sbjct: 357 PIASAVGGLRDIITN-ETGILVKAGDPGELANAILKALELSRSDLSKFRENCKKRAMSFS 415

Query: 655 WPEHCRNYL 663
           W +    Y+
Sbjct: 416 WEKSAERYV 424


>pdb|3OKA|A Chain A, Crystal Structure Of Corynebacterium Glutamicum Pimb' In
           Complex With Gdp-Man (Triclinic Crystal Form)
 pdb|3OKA|B Chain B, Crystal Structure Of Corynebacterium Glutamicum Pimb' In
           Complex With Gdp-Man (Triclinic Crystal Form)
          Length = 381

 Score = 39.7 bits (91), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 37/145 (25%), Positives = 61/145 (42%), Gaps = 14/145 (9%)

Query: 478 PTILALSRPDPKKNVTTLLKAFGECQPLRELANMTLILGNRDDIEDMSNXXXXXXXXXXK 537
           P I   SR  P+K   +L+KA  +    R  A + ++   R +                 
Sbjct: 199 PVIACNSRLVPRKGQDSLIKAMPQVIAARPDAQLLIVGSGRYE--------STLRRLATD 250

Query: 538 LIDKYDLYGQVAYPKHHKQSDVPDIYRLAAKTKGVFINPALVEPFGLTIIEAAAYGLPVV 597
           +       G++ Y          DI+ + A+T+G  ++   VE  G+  +EA A G+PV+
Sbjct: 251 VSQNVKFLGRLEYQDMINTLAAADIFAMPARTRGGGLD---VEGLGIVYLEAQACGVPVI 307

Query: 598 A-TKNGGPVDILKALNNGLLVDPHD 621
           A T  G P  +  A   GL+V+  D
Sbjct: 308 AGTSGGAPETVTPA--TGLVVEGSD 330


>pdb|3OKC|A Chain A, Crystal Structure Of Corynebacterium Glutamicum Pimb'
           Bound To Gdp (Orthorhombic Crystal Form)
 pdb|3OKP|A Chain A, Crystal Structure Of Corynebacterium Glutamicum Pimb'
           Bound To Gdp-Man (Orthorhombic Crystal Form)
          Length = 394

 Score = 39.3 bits (90), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 37/145 (25%), Positives = 61/145 (42%), Gaps = 14/145 (9%)

Query: 478 PTILALSRPDPKKNVTTLLKAFGECQPLRELANMTLILGNRDDIEDMSNXXXXXXXXXXK 537
           P I   SR  P+K   +L+KA  +    R  A + ++   R +                 
Sbjct: 199 PVIACNSRLVPRKGQDSLIKAMPQVIAARPDAQLLIVGSGRYE--------STLRRLATD 250

Query: 538 LIDKYDLYGQVAYPKHHKQSDVPDIYRLAAKTKGVFINPALVEPFGLTIIEAAAYGLPVV 597
           +       G++ Y          DI+ + A+T+G  ++   VE  G+  +EA A G+PV+
Sbjct: 251 VSQNVKFLGRLEYQDMINTLAAADIFAMPARTRGGGLD---VEGLGIVYLEAQACGVPVI 307

Query: 598 A-TKNGGPVDILKALNNGLLVDPHD 621
           A T  G P  +  A   GL+V+  D
Sbjct: 308 AGTSGGAPETVTPA--TGLVVEGSD 330


>pdb|2JJM|A Chain A, Crystal Structure Of A Family Gt4 Glycosyltransferase From
           Bacillus Anthracis Orf Ba1558.
 pdb|2JJM|B Chain B, Crystal Structure Of A Family Gt4 Glycosyltransferase From
           Bacillus Anthracis Orf Ba1558.
 pdb|2JJM|C Chain C, Crystal Structure Of A Family Gt4 Glycosyltransferase From
           Bacillus Anthracis Orf Ba1558.
 pdb|2JJM|D Chain D, Crystal Structure Of A Family Gt4 Glycosyltransferase From
           Bacillus Anthracis Orf Ba1558.
 pdb|2JJM|E Chain E, Crystal Structure Of A Family Gt4 Glycosyltransferase From
           Bacillus Anthracis Orf Ba1558.
 pdb|2JJM|F Chain F, Crystal Structure Of A Family Gt4 Glycosyltransferase From
           Bacillus Anthracis Orf Ba1558.
 pdb|2JJM|G Chain G, Crystal Structure Of A Family Gt4 Glycosyltransferase From
           Bacillus Anthracis Orf Ba1558.
 pdb|2JJM|H Chain H, Crystal Structure Of A Family Gt4 Glycosyltransferase From
           Bacillus Anthracis Orf Ba1558.
 pdb|2JJM|I Chain I, Crystal Structure Of A Family Gt4 Glycosyltransferase From
           Bacillus Anthracis Orf Ba1558.
 pdb|2JJM|J Chain J, Crystal Structure Of A Family Gt4 Glycosyltransferase From
           Bacillus Anthracis Orf Ba1558.
 pdb|2JJM|K Chain K, Crystal Structure Of A Family Gt4 Glycosyltransferase From
           Bacillus Anthracis Orf Ba1558.
 pdb|2JJM|L Chain L, Crystal Structure Of A Family Gt4 Glycosyltransferase From
           Bacillus Anthracis Orf Ba1558
          Length = 394

 Score = 35.0 bits (79), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 15/42 (35%), Positives = 26/42 (61%)

Query: 580 EPFGLTIIEAAAYGLPVVATKNGGPVDILKALNNGLLVDPHD 621
           E FGL ++EA A G+P + T+ GG  ++++  + G L +  D
Sbjct: 295 ESFGLVLLEAMACGVPCIGTRVGGIPEVIQHGDTGYLCEVGD 336


>pdb|3MBO|A Chain A, Crystal Structure Of The Glycosyltransferase Babsha Bound
           With Udp And L-Malate
 pdb|3MBO|B Chain B, Crystal Structure Of The Glycosyltransferase Babsha Bound
           With Udp And L-Malate
 pdb|3MBO|C Chain C, Crystal Structure Of The Glycosyltransferase Babsha Bound
           With Udp And L-Malate
 pdb|3MBO|D Chain D, Crystal Structure Of The Glycosyltransferase Babsha Bound
           With Udp And L-Malate
 pdb|3MBO|E Chain E, Crystal Structure Of The Glycosyltransferase Babsha Bound
           With Udp And L-Malate
 pdb|3MBO|F Chain F, Crystal Structure Of The Glycosyltransferase Babsha Bound
           With Udp And L-Malate
 pdb|3MBO|G Chain G, Crystal Structure Of The Glycosyltransferase Babsha Bound
           With Udp And L-Malate
 pdb|3MBO|H Chain H, Crystal Structure Of The Glycosyltransferase Babsha Bound
           With Udp And L-Malate
          Length = 414

 Score = 35.0 bits (79), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 15/42 (35%), Positives = 26/42 (61%)

Query: 580 EPFGLTIIEAAAYGLPVVATKNGGPVDILKALNNGLLVDPHD 621
           E FGL ++EA A G+P + T+ GG  ++++  + G L +  D
Sbjct: 315 ESFGLVLLEAMACGVPCIGTRVGGIPEVIQHGDTGYLCEVGD 356


>pdb|1XR4|A Chain A, X-ray Crystal Structure Of Putative Citrate Lyase Alpha
           Chain/citrate- Acp Transferase [salmonella Typhimurium]
 pdb|1XR4|B Chain B, X-ray Crystal Structure Of Putative Citrate Lyase Alpha
           Chain/citrate- Acp Transferase [salmonella Typhimurium]
          Length = 509

 Score = 34.7 bits (78), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 35/81 (43%), Gaps = 9/81 (11%)

Query: 260 GARDKYIAKESL----WPYIHEFVDGALNHIVN--MARAIGEQVNGGKPTWPYVIHGHYA 313
           G RD  +A  SL    WP I    +G +  I    +   +GE+++ G    P  IH H  
Sbjct: 88  GFRDLTLASSSLIDAHWPLIEHIKNGVVRQIYTSGLRGKLGEEISAGLXENPVQIHSH-- 145

Query: 314 DAGEVAAHLSGALNVPMVLTG 334
             G V    SG LN+ +   G
Sbjct: 146 -GGRVKLIQSGELNIDVAFLG 165


>pdb|2BFW|A Chain A, Structure Of The C Domain Of Glycogen Synthase From
           Pyrococcus Abyssi
          Length = 200

 Score = 33.5 bits (75), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 1/48 (2%)

Query: 574 INPALVEPFGLTIIEAAAYGLPVVATKNGGPVDILKALNNGLLVDPHD 621
           I P+  EPFGL  +EA   G   +A+  GG  DI+     G+LV   D
Sbjct: 120 IIPSYFEPFGLVALEAMCLGAIPIASAVGGLRDIITN-ETGILVKAGD 166


>pdb|2IW1|A Chain A, Crystal Structure Of Waag, A Glycosyltransferase Involved
           In Lipopolysaccharide Biosynthesis
          Length = 374

 Score = 33.5 bits (75), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 23/92 (25%), Positives = 40/92 (43%), Gaps = 14/92 (15%)

Query: 572 VFINPALVEPFGLTIIEAAAYGLPVVATKNGGPVDILKALNNG-LLVDPHDQNXXXXXXX 630
           + ++PA  E  G+ ++EA   GLPV+ T   G    +   N G ++ +P  Q        
Sbjct: 273 LLLHPAYQEAAGIVLLEAITAGLPVLTTAVCGYAHYIADANCGTVIAEPFSQE------- 325

Query: 631 XXXXXXNMWSECRKNGLKNIHRFSWPEHCRNY 662
                  +    RK   ++  R +W E+ R+Y
Sbjct: 326 ------QLNEVLRKALTQSPLRMAWAENARHY 351


>pdb|2F9F|A Chain A, Crystal Structure Of The Putative Mannosyl Transferase
           (Wbaz-1)from Archaeoglobus Fulgidus, Northeast
           Structural Genomics Target Gr29a
          Length = 177

 Score = 33.5 bits (75), Expect = 0.63,   Method: Composition-based stats.
 Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 1/58 (1%)

Query: 561 DIYRLAAKTKGVFINPALVEPFGLTIIEAAAYGLPVVATKNGGPVDILKALNNGLLVD 618
           ++  L ++ KG+    A  E FGLT IEA A G PV+A   GG  + +     G LV+
Sbjct: 90  ELIDLYSRCKGLLCT-AKDEDFGLTPIEAXASGKPVIAVNEGGFKETVINEKTGYLVN 146


>pdb|3E78|A Chain A, Structure Determination Of The Cancer-Associated
           Mycoplasma Hyorhinis Protein Mh-P37
 pdb|3E79|A Chain A, Structure Determination Of The Cancer-Associated
           Mycoplasma Hyorhinis Protein Mh-P37
 pdb|3EKI|A Chain A, Structural Insights Of The Mycoplasma Hyorhinis Protein
           Mh-P37: A Putative Thiamine Pyrophosphate Transporter
          Length = 403

 Score = 32.3 bits (72), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 22/86 (25%), Positives = 39/86 (45%), Gaps = 14/86 (16%)

Query: 658 HCRNYLSHVEHSRNRHPNSHLEIMTIPGEPLSDSLRDVEDFSLRFSMEGDFKLNAELDAV 717
           H +N  + +   R+ HPN++        +  +D+L  ++DF + FS EG F       A 
Sbjct: 269 HFQNKFTTLNEDRSAHPNAY-------KQKSADTLGTLDDFHIAFSEEGSF-------AW 314

Query: 718 TRQKNLIEAITQKASFNGNASVTHSP 743
           T  K+  +    KA+    A +  +P
Sbjct: 315 THNKSATKPFETKANEKMEALIVTNP 340


>pdb|3HMC|A Chain A, Endolysin From Bacillus Anthracis
          Length = 192

 Score = 32.3 bits (72), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 1/60 (1%)

Query: 556 QSDVPDIYRLAAKTKGVFINPALVEPFGLTIIEAAAYGLP-VVATKNGGPVDILKALNNG 614
           Q+ + ++YRL AK  G+++   +  PFG+  +++    +P     K   P DI +    G
Sbjct: 107 QAFIDELYRLGAKKVGLYVGHHMYTPFGMANVKSDFVWIPRYGGNKPAYPCDIWQYTETG 166


>pdb|4IR8|A Chain A, 1.85 Angstrom Crystal Structure Of Putative
           Sedoheptulose-1,7 Bisphosphatase From Toxoplasma Gondii
 pdb|4IR8|B Chain B, 1.85 Angstrom Crystal Structure Of Putative
           Sedoheptulose-1,7 Bisphosphatase From Toxoplasma Gondii
          Length = 347

 Score = 31.6 bits (70), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 12/28 (42%), Positives = 17/28 (60%)

Query: 550 YPKHHKQSDVPDIYRLAAKTKGVFINPA 577
           Y   +    VPD+Y++  K +GVF NPA
Sbjct: 251 YTLRYTGGLVPDVYQIFVKQQGVFCNPA 278


>pdb|2NW0|A Chain A, Crystal Structure Of A Lysin
 pdb|2NW0|B Chain B, Crystal Structure Of A Lysin
          Length = 189

 Score = 31.2 bits (69), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 15/54 (27%), Positives = 26/54 (48%)

Query: 556 QSDVPDIYRLAAKTKGVFINPALVEPFGLTIIEAAAYGLPVVATKNGGPVDILK 609
           Q+ + ++YRL AK  G+++     E FG   I+     +P    K   P D+ +
Sbjct: 103 QAFIDELYRLGAKKVGLYVGHHKYEEFGAAQIKCDFTWIPRYGAKPAYPCDLWQ 156


>pdb|2IV7|A Chain A, Crystal Structure Of Waag, A Glycosyltransferase Involved
           In Lipopolysaccharide Biosynthesis
          Length = 374

 Score = 31.2 bits (69), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 14/89 (15%)

Query: 575 NPALVEPFGLTIIEAAAYGLPVVATKNGGPVDILKALNNG-LLVDPHDQNXXXXXXXXXX 633
           +PA  E  G+ ++EA   GLPV+ T   G    +   N G ++ +P  Q           
Sbjct: 276 HPAYQEAAGIVLLEAITAGLPVLTTAVCGYAHYIADANCGTVIAEPFSQE---------- 325

Query: 634 XXXNMWSECRKNGLKNIHRFSWPEHCRNY 662
               +    RK   ++  R +W E+ R+Y
Sbjct: 326 ---QLNEVLRKALTQSPLRXAWAENARHY 351


>pdb|1HM2|A Chain A, Active Site Of Chondroitinase Ac Lyase Revealed By The
           Structure Of Enzyme-Oligosaccharide Complexes And
           Mutagenesis
 pdb|1HM3|A Chain A, Active Site Of Chondroitinase Ac Lyase Revealed By The
           Structure Of Enzyme-Oligosaccharide Complexes And
           Mutagenesis
 pdb|1HMU|A Chain A, Active Site Of Chondroitinase Ac Lyase Revealed By The
           Structure Of Enzyme-oligosaccharide Complexes And
           Mutagenesis
 pdb|1HMW|A Chain A, Active Site Of Chondroitinase Ac Lyase Revealed By The
           Structure Of Enzyme-oligosaccharide Complexes And
           Mutagenesis
          Length = 700

 Score = 30.8 bits (68), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 7/79 (8%)

Query: 828 PWRDMVADGDYEAHVEYRWPGENVRSVVPRVARAEDGAEDDIVG-FVDASSSRCQ----- 881
           P+     +GDY  H+   +   NVR V  R  R+E G +++++G ++   ++  Q     
Sbjct: 338 PYHHQFWNGDYVQHLRPAY-SFNVRMVSKRTRRSESGNKENLLGRYLSDGATNIQLRGPE 396

Query: 882 SYSIKPGAETRKVDNIRQR 900
            Y+I P  E  K+  I  R
Sbjct: 397 YYNIMPVWEWDKIPGITSR 415


>pdb|1CB8|A Chain A, Chondroitinase Ac Lyase From Flavobacterium Heparinum
          Length = 678

 Score = 30.4 bits (67), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 7/79 (8%)

Query: 828 PWRDMVADGDYEAHVEYRWPGENVRSVVPRVARAEDGAEDDIVG-FVDASSSRCQ----- 881
           P+     +GDY  H+   +   NVR V  R  R+E G +++++G ++   ++  Q     
Sbjct: 316 PYHHQFWNGDYVQHLRPAY-SFNVRMVSKRTRRSESGNKENLLGRYLSDGATNIQLRGPE 374

Query: 882 SYSIKPGAETRKVDNIRQR 900
            Y+I P  E  K+  I  R
Sbjct: 375 YYNIMPVWEWDKIPGITSR 393


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.135    0.400 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,739,467
Number of Sequences: 62578
Number of extensions: 1303861
Number of successful extensions: 2882
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 2840
Number of HSP's gapped (non-prelim): 36
length of query: 1024
length of database: 14,973,337
effective HSP length: 109
effective length of query: 915
effective length of database: 8,152,335
effective search space: 7459386525
effective search space used: 7459386525
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)