BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001707
(1023 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VFD|A Chain A, Human Spastin Aaa Domain
Length = 389
Score = 207 bits (527), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 125/321 (38%), Positives = 192/321 (59%), Gaps = 15/321 (4%)
Query: 694 TASRKPTQNLKNLAK-DEYESNFVSAVVPPGEIGVRFDDIGALEDVKKALNELVILPMRR 752
TA+RK ++LKN D +N + + V+FDDI + K+AL E+VILP R
Sbjct: 79 TATRK-KKDLKNFRNVDSNLANLIMNEIVDNGTAVKFDDIAGQDLAKQALQEIVILPSLR 137
Query: 753 PDLFSRGNLLRPCKGILLFGPPXXXXXXXXXXXXXXXXXNFISITGSTLTSKWFGDAEKL 812
P+LF+ L P +G+LLFGPP F +I+ ++LTSK+ G+ EKL
Sbjct: 138 PELFT--GLRAPARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKL 195
Query: 813 TKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKIL 872
+ALF+ A +L P IIF+D+VDSLL R EH+A+RR++ EF+ +DG++S ++L
Sbjct: 196 VRALFAVARELQPSIIFIDQVDSLLCERREG-EHDASRRLKTEFLIEFDGVQSAGDDRVL 254
Query: 873 ILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHE-SLESGFQFNELANAT 931
++GATNRP +LD+AV+RR +R+YV LP+ E R+ +L+ L + S + + +LA T
Sbjct: 255 VMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMT 314
Query: 932 EGYSGSDLKNLCIAAAYRPVQELLEEERKLFIQRGKNDAAPVLRPLKLEDFIQSKAKVGP 991
+GYSGSDL L AA P++EL E+ KN +A +R ++L DF +S K+
Sbjct: 315 DGYSGSDLTALAKDAALGPIRELKPEQV-------KNMSASEMRNIRLSDFTESLKKIKR 367
Query: 992 SVAYDAASMNELRKWNEQYGE 1012
SV+ ++ +WN+ +G+
Sbjct: 368 SVS--PQTLEAYIRWNKDFGD 386
>pdb|3D8B|A Chain A, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
pdb|3D8B|B Chain B, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
Length = 357
Score = 184 bits (468), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 105/288 (36%), Positives = 161/288 (55%), Gaps = 13/288 (4%)
Query: 727 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPXXXXXXXXXXXX 786
V ++DI +E K + E+V+ PM RPD+F+ L P KGILLFGPP
Sbjct: 81 VNWEDIAGVEFAKATIKEIVVWPMLRPDIFT--GLRGPPKGILLFGPPGTGKTLIGKCIA 138
Query: 787 XXXXXNFISITGSTLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEH 846
F SI+ S+LTSKW G+ EK+ +ALF+ A P +IF+DE+DSLL RG EH
Sbjct: 139 SQSGATFFSISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDG-EH 197
Query: 847 EATRRMRNEFMSAWDGLRSKESQKILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRM 906
E++RR++ EF+ DG + +IL++GATNRP ++D+A RRL +R+Y+ LP+A R
Sbjct: 198 ESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARK 257
Query: 907 KILRIFLAHE-SLESGFQFNELANATEGYSGSDLKNLCIAAAYRPVQELLEEERKLFIQR 965
+I+ ++ E S + ++ ++ +SG+D+ LC A+ P++ L + I
Sbjct: 258 QIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREASLGPIRSLQTAD----IAT 313
Query: 966 GKNDAAPVLRPLKLEDFIQSKAKVGPSVAYDAASMNELRKWNEQYGEG 1013
D +RP+ DF + V PSV+ + E WN+ +G G
Sbjct: 314 ITPDQ---VRPIAYIDFENAFRTVRPSVSPKDLELYE--NWNKTFGCG 356
>pdb|3B9P|A Chain A, Spastin
Length = 297
Score = 184 bits (466), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 115/292 (39%), Positives = 164/292 (56%), Gaps = 14/292 (4%)
Query: 723 GEIGVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPXXXXXXXX 782
G V + DI + K+AL E+VILP RP+LF+ L P KG+LLFGPP
Sbjct: 14 GGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFT--GLRAPAKGLLLFGPPGNGKTLLA 71
Query: 783 XXXXXXXXXNFISITGSTLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGG 842
F++I+ ++LTSK+ GD EKL +ALF+ A + P IIF+DEVDS L +
Sbjct: 72 RAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDS-LLSERS 130
Query: 843 AFEHEATRRMRNEFMSAWDGLRSK-ESQKILILGATNRPFDLDDAVIRRLPRRIYVDLPD 901
+ EHEA+RR++ EF+ +DGL + +I++L ATNRP +LD+A +RR +R+YV LPD
Sbjct: 131 SSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALRRFTKRVYVSLPD 190
Query: 902 AENRMKIL-RIFLAHESLESGFQFNELANATEGYSGSDLKNLCIAAAYRPVQELLEEERK 960
+ R +L R+ S LA T+GYSGSDL L AA P++EL E+ K
Sbjct: 191 EQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAALEPIRELNVEQVK 250
Query: 961 LFIQRGKNDAAPVLRPLKLEDFIQSKAKVGPSVAYDAASMNELRKWNEQYGE 1012
+R + +DF S ++ SVA S+N KW++ YG+
Sbjct: 251 CL-------DISAMRAITEQDFHSSLKRIRRSVA--PQSLNSYEKWSQDYGD 293
>pdb|2QP9|X Chain X, Crystal Structure Of S.Cerevisiae Vps4
pdb|2QPA|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
Length = 355
Score = 172 bits (435), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 93/229 (40%), Positives = 136/229 (59%), Gaps = 5/229 (2%)
Query: 727 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPXXXXXXXXXXXX 786
V+++D+ LE K+AL E VILP++ P LF +GN +P GILL+GPP
Sbjct: 48 VKWEDVAGLEGAKEALKEAVILPVKFPHLF-KGNR-KPTSGILLYGPPGTGKSYLAKAVA 105
Query: 787 XXXXXNFISITGSTLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEH 846
F S++ S L SKW G++EKL K LF+ A + P IIF+D+VD+L G RG E
Sbjct: 106 TEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEG-ES 164
Query: 847 EATRRMRNEFMSAWDGLRSKESQKILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRM 906
EA+RR++ E + +G+ +SQ +L+LGATN P+ LD A+ RR RRIY+ LPD R
Sbjct: 165 EASRRIKTELLVQMNGV-GNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAART 223
Query: 907 KILRIFLAHE-SLESGFQFNELANATEGYSGSDLKNLCIAAAYRPVQEL 954
+ I + S+ + + L TEGYSGSD+ + A +P++++
Sbjct: 224 TMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKI 272
>pdb|2RKO|A Chain A, Crystal Structure Of The Vps4p-Dimer
Length = 331
Score = 170 bits (431), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 96/242 (39%), Positives = 140/242 (57%), Gaps = 9/242 (3%)
Query: 718 AVVPPGEIG----VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGP 773
+VP G + V+++D+ LE K+AL E VILP++ P LF +GN +P GILL+GP
Sbjct: 11 GLVPRGSLSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLF-KGNR-KPTSGILLYGP 68
Query: 774 PXXXXXXXXXXXXXXXXXNFISITGSTLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEV 833
P F S++ S L SKW G++EKL K LF+ A + P IIF+DEV
Sbjct: 69 PGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDEV 128
Query: 834 DSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPFDLDDAVIRRLPR 893
D+L G RG E EA+RR++ E + +G+ +SQ +L+LGATN P+ LD A+ RR R
Sbjct: 129 DALTGTRGEG-ESEASRRIKTELLVQMNGV-GNDSQGVLVLGATNIPWQLDSAIRRRFER 186
Query: 894 RIYVDLPDAENRMKILRIFLAHE-SLESGFQFNELANATEGYSGSDLKNLCIAAAYRPVQ 952
RIY+ LPD R + I + + + + L TEGYSGSD+ + A +P++
Sbjct: 187 RIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIR 246
Query: 953 EL 954
++
Sbjct: 247 KI 248
>pdb|3EIH|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
Length = 340
Score = 168 bits (426), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 92/229 (40%), Positives = 135/229 (58%), Gaps = 5/229 (2%)
Query: 727 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPXXXXXXXXXXXX 786
V+++D+ LE K+AL E VILP++ P LF +GN +P GILL+GPP
Sbjct: 33 VKWEDVAGLEGAKEALKEAVILPVKFPHLF-KGNR-KPTSGILLYGPPGTGKSYLAKAVA 90
Query: 787 XXXXXNFISITGSTLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEH 846
F S++ S L SKW G++EKL K LF+ A + P IIF+D+VD+L G RG E
Sbjct: 91 TEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEG-ES 149
Query: 847 EATRRMRNEFMSAWDGLRSKESQKILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRM 906
EA+RR++ E + +G+ +SQ +L+LGATN P+ LD A+ RR RRIY+ LPD R
Sbjct: 150 EASRRIKTELLVQMNGV-GNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAART 208
Query: 907 KILRIFLAHE-SLESGFQFNELANATEGYSGSDLKNLCIAAAYRPVQEL 954
+ I + + + + L TEGYSGSD+ + A +P++++
Sbjct: 209 TMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKI 257
>pdb|3EIE|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The So4-Bound
State
Length = 322
Score = 168 bits (426), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 92/229 (40%), Positives = 135/229 (58%), Gaps = 5/229 (2%)
Query: 727 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPXXXXXXXXXXXX 786
V+++D+ LE K+AL E VILP++ P LF +GN +P GILL+GPP
Sbjct: 15 VKWEDVAGLEGAKEALKEAVILPVKFPHLF-KGNR-KPTSGILLYGPPGTGKSYLAKAVA 72
Query: 787 XXXXXNFISITGSTLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEH 846
F S++ S L SKW G++EKL K LF+ A + P IIF+D+VD+L G RG E
Sbjct: 73 TEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEG-ES 131
Query: 847 EATRRMRNEFMSAWDGLRSKESQKILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRM 906
EA+RR++ E + +G+ +SQ +L+LGATN P+ LD A+ RR RRIY+ LPD R
Sbjct: 132 EASRRIKTELLVQMNGV-GNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAART 190
Query: 907 KILRIFLAHE-SLESGFQFNELANATEGYSGSDLKNLCIAAAYRPVQEL 954
+ I + + + + L TEGYSGSD+ + A +P++++
Sbjct: 191 TMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKI 239
>pdb|2ZAM|A Chain A, Crystal Structure Of Mouse Skd1VPS4B APO-Form
pdb|2ZAN|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ATP-Form
pdb|2ZAO|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ADP-Form
Length = 444
Score = 163 bits (412), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 95/231 (41%), Positives = 132/231 (57%), Gaps = 8/231 (3%)
Query: 727 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPXX-XXXXXXXXX 785
V++ D+ LE K+AL E VILP++ P LF+ P +GILLFGPP
Sbjct: 131 VKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKR--TPWRGILLFGPPGTGKSYLAKAVA 188
Query: 786 XXXXXXNFISITGSTLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFE 845
F SI+ S L SKW G++EKL K LF A + P IIF+DE+DSL G+R E
Sbjct: 189 TEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSR-SENE 247
Query: 846 HEATRRMRNEFMSAWDGLRSKESQKILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENR 905
EA RR++ EF+ G+ ++ IL+LGATN P+ LD A+ RR +RIY+ LP+A R
Sbjct: 248 SEAARRIKTEFLVQMQGV-GVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHAR 306
Query: 906 MKILRIFLA--HESLESGFQFNELANATEGYSGSDLKNLCIAAAYRPVQEL 954
+ R+ L SL F EL T+GYSG+D+ + A +PV+++
Sbjct: 307 AAMFRLHLGSTQNSLTEA-DFQELGRKTDGYSGADISIIVRDALMQPVRKV 356
>pdb|1XWI|A Chain A, Crystal Structure Of Vps4b
Length = 322
Score = 157 bits (397), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 93/231 (40%), Positives = 131/231 (56%), Gaps = 8/231 (3%)
Query: 727 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPXX-XXXXXXXXX 785
V++ D+ LE K+AL E VILP++ P LF+ P +GILLFGPP
Sbjct: 9 VKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKR--TPWRGILLFGPPGTGKSYLAKAVA 66
Query: 786 XXXXXXNFISITGSTLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFE 845
F SI+ S L SKW G++EKL K LF A + P IIF+DE+DSL G+R E
Sbjct: 67 TEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSEN-E 125
Query: 846 HEATRRMRNEFMSAWDGLRSKESQKILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENR 905
EA RR++ EF+ G+ ++ IL+LGATN P+ LD A+ RR +RIY+ LP+ R
Sbjct: 126 SEAARRIKTEFLVQMQGV-GVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHAR 184
Query: 906 MKILRIFLA--HESLESGFQFNELANATEGYSGSDLKNLCIAAAYRPVQEL 954
+ ++ L SL F EL T+GYSG+D+ + A +PV+++
Sbjct: 185 AAMFKLHLGTTQNSLTEA-DFRELGRKTDGYSGADISIIVRDALMQPVRKV 234
>pdb|3CF0|A Chain A, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|B Chain B, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|C Chain C, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|D Chain D, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|E Chain E, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|F Chain F, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|G Chain G, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|H Chain H, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|I Chain I, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|J Chain J, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|K Chain K, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|L Chain L, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|M Chain M, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|N Chain N, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
Length = 301
Score = 146 bits (368), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 82/221 (37%), Positives = 123/221 (55%), Gaps = 7/221 (3%)
Query: 727 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPXXXXXXXXXXXX 786
V ++DIG LEDVK+ L ELV P+ PD F + + P KG+L +GPP
Sbjct: 12 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGM-TPSKGVLFYGPPGCGKTLLAKAIA 70
Query: 787 XXXXXNFISITGSTLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGAR--GGAF 844
NFISI G L + WFG++E + +F A + AP ++F DE+DS+ AR
Sbjct: 71 NECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGD 130
Query: 845 EHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPFDLDDAVIR--RLPRRIYVDLPDA 902
A R+ N+ ++ DG+ +K++ + I+GATNRP +D A++R RL + IY+ LPD
Sbjct: 131 GGGAADRVINQILTEMDGMSTKKN--VFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDE 188
Query: 903 ENRMKILRIFLAHESLESGFQFNELANATEGYSGSDLKNLC 943
++R+ IL+ L + LA T G+SG+DL +C
Sbjct: 189 KSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEIC 229
>pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A
Length = 816
Score = 145 bits (367), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 82/221 (37%), Positives = 123/221 (55%), Gaps = 7/221 (3%)
Query: 727 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPXXXXXXXXXXXX 786
V ++DIG LEDVK+ L ELV P+ PD F + + P KG+L +GPP
Sbjct: 474 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGM-TPSKGVLFYGPPGCGKTLLAKAIA 532
Query: 787 XXXXXNFISITGSTLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGAR--GGAF 844
NFISI G L + WFG++E + +F A + AP ++F DE+DS+ AR
Sbjct: 533 NECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGD 592
Query: 845 EHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPFDLDDAVIR--RLPRRIYVDLPDA 902
A R+ N+ ++ DG+ +K++ + I+GATNRP +D A++R RL + IY+ LPD
Sbjct: 593 GGGAADRVINQILTEMDGMSTKKN--VFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDE 650
Query: 903 ENRMKILRIFLAHESLESGFQFNELANATEGYSGSDLKNLC 943
++R+ IL+ L + LA T G+SG+DL +C
Sbjct: 651 KSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEIC 691
Score = 126 bits (317), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 75/232 (32%), Positives = 122/232 (52%), Gaps = 6/232 (2%)
Query: 727 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPXXXXXXXXXXXX 786
V +DD+G + E+V LP+R P LF + ++P +GILL+GPP
Sbjct: 201 VGYDDVGGCRKQLAQIKEMVELPLRHPALF-KAIGVKPPRGILLYGPPGTGKTLIARAVA 259
Query: 787 XXXXXNFISITGSTLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEH 846
F I G + SK G++E + F A K AP IIF+DE+D++ R
Sbjct: 260 NETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT-HG 318
Query: 847 EATRRMRNEFMSAWDGLRSKESQKILILGATNRPFDLDDAVIR--RLPRRIYVDLPDAEN 904
E RR+ ++ ++ DGL K+ ++++ ATNRP +D A+ R R R + + +PDA
Sbjct: 319 EVERRIVSQLLTLMDGL--KQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATG 376
Query: 905 RMKILRIFLAHESLESGFQFNELANATEGYSGSDLKNLCIAAAYRPVQELLE 956
R++IL+I + L ++AN T G+ G+DL LC AA + +++ ++
Sbjct: 377 RLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMD 428
>pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF2|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|D Chain D, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF3|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADP
Length = 806
Score = 145 bits (367), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 82/221 (37%), Positives = 123/221 (55%), Gaps = 7/221 (3%)
Query: 727 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPXXXXXXXXXXXX 786
V ++DIG LEDVK+ L ELV P+ PD F + + P KG+L +GPP
Sbjct: 474 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGM-TPSKGVLFYGPPGCGKTLLAKAIA 532
Query: 787 XXXXXNFISITGSTLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGAR--GGAF 844
NFISI G L + WFG++E + +F A + AP ++F DE+DS+ AR
Sbjct: 533 NECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGD 592
Query: 845 EHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPFDLDDAVIR--RLPRRIYVDLPDA 902
A R+ N+ ++ DG+ +K++ + I+GATNRP +D A++R RL + IY+ LPD
Sbjct: 593 GGGAADRVINQILTEMDGMSTKKN--VFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDE 650
Query: 903 ENRMKILRIFLAHESLESGFQFNELANATEGYSGSDLKNLC 943
++R+ IL+ L + LA T G+SG+DL +C
Sbjct: 651 KSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEIC 691
Score = 127 bits (318), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 76/232 (32%), Positives = 122/232 (52%), Gaps = 6/232 (2%)
Query: 727 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPXXXXXXXXXXXX 786
V +DDIG + E+V LP+R P LF + ++P +GILL+GPP
Sbjct: 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALF-KAIGVKPPRGILLYGPPGTGKTLIARAVA 259
Query: 787 XXXXXNFISITGSTLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEH 846
F I G + SK G++E + F A K AP IIF+DE+D++ R
Sbjct: 260 NETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT-HG 318
Query: 847 EATRRMRNEFMSAWDGLRSKESQKILILGATNRPFDLDDAVIR--RLPRRIYVDLPDAEN 904
E RR+ ++ ++ DGL K+ ++++ ATNRP +D A+ R R R + + +PDA
Sbjct: 319 EVERRIVSQLLTLMDGL--KQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATG 376
Query: 905 RMKILRIFLAHESLESGFQFNELANATEGYSGSDLKNLCIAAAYRPVQELLE 956
R++IL+I + L ++AN T G+ G+DL LC AA + +++ ++
Sbjct: 377 RLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMD 428
>pdb|3H4M|A Chain A, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|B Chain B, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|C Chain C, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
Length = 285
Score = 138 bits (347), Expect = 2e-32, Method: Composition-based stats.
Identities = 82/232 (35%), Positives = 122/232 (52%), Gaps = 7/232 (3%)
Query: 727 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPXXXXXXXXXXXX 786
VR++DIG LE + + E+V LP++ P+LF + + P KGILL+GPP
Sbjct: 14 VRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGI-EPPKGILLYGPPGTGKTLLAKAVA 72
Query: 787 XXXXXNFISITGSTLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFE- 845
FI + GS L K+ G+ L K +F A + AP IIF+DE+D++ R A
Sbjct: 73 TETNATFIRVVGSELVKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTG 132
Query: 846 -HEATRRMRNEFMSAWDGLRSKESQKILILGATNRPFDLDDAVIR--RLPRRIYVDLPDA 902
+R + ++ DG ++ K I+GATNRP LD A++R R R I V PD
Sbjct: 133 GDREVQRTLMQLLAEMDGFDARGDVK--IIGATNRPDILDPAILRPGRFDRIIEVPAPDE 190
Query: 903 ENRMKILRIFLAHESLESGFQFNELANATEGYSGSDLKNLCIAAAYRPVQEL 954
+ R++IL+I +L E+A TEG G++LK +C A ++EL
Sbjct: 191 KGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKAICTEAGMNAIREL 242
>pdb|4B4T|L Chain L, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 129 bits (324), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 71/227 (31%), Positives = 123/227 (54%), Gaps = 9/227 (3%)
Query: 727 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPXXXXXXXXXXXX 786
+ FD IG L + + L E++ LP++ P++F R + +P KG+LL+GPP
Sbjct: 178 ITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGI-KPPKGVLLYGPPGTGKTLLAKAVA 236
Query: 787 XXXXXNFISITGSTLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGAR---GGA 843
NFI S + K+ G++ ++ + +F++A + P IIF+DEVD++ G R G +
Sbjct: 237 ATIGANFIFSPASGIVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTS 296
Query: 844 FEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPFDLDDAVIR--RLPRRIYVDLPD 901
+ E R + E ++ DG + KI++ ATNRP LD A++R RL R++ + LP+
Sbjct: 297 ADREIQRTLM-ELLTQMDGFDNLGQTKIIM--ATNRPDTLDPALLRPGRLDRKVEIPLPN 353
Query: 902 AENRMKILRIFLAHESLESGFQFNELANATEGYSGSDLKNLCIAAAY 948
R++I +I A F F ++G++G+D++N A +
Sbjct: 354 EAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRNCATEAGF 400
>pdb|3HU3|A Chain A, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
pdb|3HU3|B Chain B, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
Length = 489
Score = 127 bits (319), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 76/232 (32%), Positives = 122/232 (52%), Gaps = 6/232 (2%)
Query: 727 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPXXXXXXXXXXXX 786
V +DDIG + E+V LP+R P LF + ++P +GILL+GPP
Sbjct: 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALF-KAIGVKPPRGILLYGPPGTGKTLIARAVA 259
Query: 787 XXXXXNFISITGSTLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEH 846
F I G + SK G++E + F A K AP IIF+DE+D++ R
Sbjct: 260 NETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT-HG 318
Query: 847 EATRRMRNEFMSAWDGLRSKESQKILILGATNRPFDLDDAVIR--RLPRRIYVDLPDAEN 904
E RR+ ++ ++ DGL K+ ++++ ATNRP +D A+ R R R + + +PDA
Sbjct: 319 EVERRIVSQLLTLMDGL--KQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATG 376
Query: 905 RMKILRIFLAHESLESGFQFNELANATEGYSGSDLKNLCIAAAYRPVQELLE 956
R++IL+I + L ++AN T G+ G+DL LC AA + +++ ++
Sbjct: 377 RLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMD 428
>pdb|3HU2|A Chain A, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|B Chain B, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|C Chain C, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|D Chain D, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|E Chain E, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|F Chain F, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
Length = 489
Score = 127 bits (319), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 76/232 (32%), Positives = 122/232 (52%), Gaps = 6/232 (2%)
Query: 727 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPXXXXXXXXXXXX 786
V +DDIG + E+V LP+R P LF + ++P +GILL+GPP
Sbjct: 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALF-KAIGVKPPRGILLYGPPGTGKTLIARAVA 259
Query: 787 XXXXXNFISITGSTLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEH 846
F I G + SK G++E + F A K AP IIF+DE+D++ R
Sbjct: 260 NETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT-HG 318
Query: 847 EATRRMRNEFMSAWDGLRSKESQKILILGATNRPFDLDDAVIR--RLPRRIYVDLPDAEN 904
E RR+ ++ ++ DGL K+ ++++ ATNRP +D A+ R R R + + +PDA
Sbjct: 319 EVERRIVSQLLTLMDGL--KQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATG 376
Query: 905 RMKILRIFLAHESLESGFQFNELANATEGYSGSDLKNLCIAAAYRPVQELLE 956
R++IL+I + L ++AN T G+ G+DL LC AA + +++ ++
Sbjct: 377 RLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMD 428
>pdb|3HU1|A Chain A, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|B Chain B, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|C Chain C, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|D Chain D, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|E Chain E, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|F Chain F, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
Length = 489
Score = 127 bits (319), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 76/232 (32%), Positives = 122/232 (52%), Gaps = 6/232 (2%)
Query: 727 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPXXXXXXXXXXXX 786
V +DDIG + E+V LP+R P LF + ++P +GILL+GPP
Sbjct: 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALF-KAIGVKPPRGILLYGPPGTGKTLIARAVA 259
Query: 787 XXXXXNFISITGSTLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEH 846
F I G + SK G++E + F A K AP IIF+DE+D++ R
Sbjct: 260 NETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT-HG 318
Query: 847 EATRRMRNEFMSAWDGLRSKESQKILILGATNRPFDLDDAVIR--RLPRRIYVDLPDAEN 904
E RR+ ++ ++ DGL K+ ++++ ATNRP +D A+ R R R + + +PDA
Sbjct: 319 EVERRIVSQLLTLMDGL--KQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATG 376
Query: 905 RMKILRIFLAHESLESGFQFNELANATEGYSGSDLKNLCIAAAYRPVQELLE 956
R++IL+I + L ++AN T G+ G+DL LC AA + +++ ++
Sbjct: 377 RLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMD 428
>pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And The D1 Aaa Domain
Of Membrane Fusion Atpase P97
pdb|1S3S|A Chain A, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|B Chain B, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|C Chain C, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|D Chain D, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|E Chain E, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|F Chain F, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
Length = 458
Score = 126 bits (317), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 75/232 (32%), Positives = 122/232 (52%), Gaps = 6/232 (2%)
Query: 727 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPXXXXXXXXXXXX 786
V +DD+G + E+V LP+R P LF + ++P +GILL+GPP
Sbjct: 201 VGYDDVGGCRKQLAQIKEMVELPLRHPALF-KAIGVKPPRGILLYGPPGTGKTLIARAVA 259
Query: 787 XXXXXNFISITGSTLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEH 846
F I G + SK G++E + F A K AP IIF+DE+D++ R
Sbjct: 260 NETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT-HG 318
Query: 847 EATRRMRNEFMSAWDGLRSKESQKILILGATNRPFDLDDAVIR--RLPRRIYVDLPDAEN 904
E RR+ ++ ++ DGL K+ ++++ ATNRP +D A+ R R R + + +PDA
Sbjct: 319 EVERRIVSQLLTLMDGL--KQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATG 376
Query: 905 RMKILRIFLAHESLESGFQFNELANATEGYSGSDLKNLCIAAAYRPVQELLE 956
R++IL+I + L ++AN T G+ G+DL LC AA + +++ ++
Sbjct: 377 RLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMD 428
>pdb|4B4T|J Chain J, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 405
Score = 121 bits (303), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 74/230 (32%), Positives = 118/230 (51%), Gaps = 9/230 (3%)
Query: 729 FDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPXXXXXXXXXXXXXX 788
+D +G L K + E++ LP++ P+LF + +P KG++L+GPP
Sbjct: 147 YDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQP-KGVILYGPPGTGKTLLARAVAHH 205
Query: 789 XXXNFISITGSTLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGAR---GGAFE 845
FI ++G+ L K+ G+ ++ + LF A + AP IIF+DE+DS+ R G +
Sbjct: 206 TDCKFIRVSGAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGD 265
Query: 846 HEATRRMRNEFMSAWDGLRSKESQKILILGATNRPFDLDDAVIR--RLPRRIYVDLPDAE 903
E R M E ++ DG + S+ I I+ ATNR LD A++R R+ R+I P
Sbjct: 266 SEVQRTML-ELLNQLDGFET--SKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVA 322
Query: 904 NRMKILRIFLAHESLESGFQFNELANATEGYSGSDLKNLCIAAAYRPVQE 953
R +ILRI +L G ++A G SG+D+K +C A ++E
Sbjct: 323 ARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVCTEAGMYALRE 372
>pdb|2X8A|A Chain A, Human Nuclear Valosin Containing Protein Like (Nvl), C-
Terminal Aaa-Atpase Domain
Length = 274
Score = 120 bits (302), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 74/223 (33%), Positives = 120/223 (53%), Gaps = 11/223 (4%)
Query: 727 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPXXXXXXXXXXXX 786
V + DIGALED+++ L ++ P+R PD F L+ P G+LL GPP
Sbjct: 7 VTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPA-GVLLAGPPGCGKTLLAKAVA 65
Query: 787 XXXXXNFISITGSTLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEH 846
NFIS+ G L + + G++E+ + +F A AP +IF DEVD+L R E
Sbjct: 66 NESGLNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDR-ET 124
Query: 847 EATRRMRNEFMSAWDGLRSKESQKILILGATNRPFDLDDAVIR--RLPRRIYVDLPDAEN 904
A+ R+ N+ ++ DGL ++ Q++ I+ ATNRP +D A++R RL + ++V LP +
Sbjct: 125 GASVRVVNQLLTEMDGLEAR--QQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPAD 182
Query: 905 RMKILRIFLAHES---LESGFQFNELAN--ATEGYSGSDLKNL 942
R+ IL+ + + L++ +A + Y+G+DL L
Sbjct: 183 RLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSAL 225
>pdb|4B4T|H Chain H, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 467
Score = 120 bits (300), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 73/226 (32%), Positives = 116/226 (51%), Gaps = 9/226 (3%)
Query: 727 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPXXXXXXXXXXXX 786
V + D+G +D + L E+V LP+ P+ F+ + P KGILL+GPP
Sbjct: 206 VTYSDVGGCKDQIEKLREVVELPLLSPERFATLGI-DPPKGILLYGPPGTGKTLCARAVA 264
Query: 787 XXXXXNFISITGSTLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGAR---GGA 843
FI + GS L K+ G+ ++ + LF A IIF DE+D++ GAR G
Sbjct: 265 NRTDATFIRVIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAG 324
Query: 844 FEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPFDLDDAVIR--RLPRRIYVDLPD 901
++E R M E ++ DG + + K++ ATNRP LD A++R R+ R++ LPD
Sbjct: 325 GDNEVQRTML-ELITQLDGFDPRGNIKVMF--ATNRPNTLDPALLRPGRIDRKVEFSLPD 381
Query: 902 AENRMKILRIFLAHESLESGFQFNELANATEGYSGSDLKNLCIAAA 947
E R I RI S+E G ++ ++ +G++L+++C A
Sbjct: 382 LEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAG 427
>pdb|2CE7|A Chain A, Edta Treated
pdb|2CE7|B Chain B, Edta Treated
pdb|2CE7|C Chain C, Edta Treated
pdb|2CE7|D Chain D, Edta Treated
pdb|2CE7|E Chain E, Edta Treated
pdb|2CE7|F Chain F, Edta Treated
pdb|2CEA|A Chain A, Cell Division Protein Ftsh
pdb|2CEA|B Chain B, Cell Division Protein Ftsh
pdb|2CEA|C Chain C, Cell Division Protein Ftsh
pdb|2CEA|D Chain D, Cell Division Protein Ftsh
pdb|2CEA|E Chain E, Cell Division Protein Ftsh
pdb|2CEA|F Chain F, Cell Division Protein Ftsh
Length = 476
Score = 113 bits (283), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 79/237 (33%), Positives = 113/237 (47%), Gaps = 8/237 (3%)
Query: 721 PPGEIGVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPXXXXXX 780
P G V F D+G E+ + L E+V ++ P F+R P KGILL GPP
Sbjct: 7 PSGNKRVTFKDVGGAEEAIEELKEVVEF-LKDPSKFNRIGARMP-KGILLVGPPGTGKTL 64
Query: 781 XXXXXXXXXXXNFISITGSTLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGAR 840
F I+GS + G + LF+ A AP I+F+DE+D++ R
Sbjct: 65 LARAVAGEANVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHR 124
Query: 841 GGAFE--HEATRRMRNEFMSAWDGLRSKESQKILILGATNRPFDLDDAVIR--RLPRRIY 896
G H+ + N+ + DG SKE I+++ ATNRP LD A++R R ++I
Sbjct: 125 GAGLGGGHDEREQTLNQLLVEMDGFDSKEG--IIVMAATNRPDILDPALLRPGRFDKKIV 182
Query: 897 VDLPDAENRMKILRIFLAHESLESGFQFNELANATEGYSGSDLKNLCIAAAYRPVQE 953
VD PD R KIL I ++ L +A T G+ G+DL+NL AA +E
Sbjct: 183 VDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAARE 239
>pdb|3KDS|E Chain E, Apo-ftsh Crystal Structure
pdb|3KDS|F Chain F, Apo-ftsh Crystal Structure
pdb|3KDS|G Chain G, Apo-ftsh Crystal Structure
Length = 465
Score = 113 bits (283), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 79/237 (33%), Positives = 113/237 (47%), Gaps = 8/237 (3%)
Query: 721 PPGEIGVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPXXXXXX 780
P G V F D+G E+ + L E+V ++ P F+R P KGILL GPP
Sbjct: 7 PSGNKRVTFKDVGGAEEAIEELKEVVEF-LKDPSKFNRIGARMP-KGILLVGPPGTGATL 64
Query: 781 XXXXXXXXXXXNFISITGSTLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGAR 840
F I+GS + G + LF+ A AP I+F+DE+D++ R
Sbjct: 65 LARAVAGEANVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHR 124
Query: 841 GGAFE--HEATRRMRNEFMSAWDGLRSKESQKILILGATNRPFDLDDAVIR--RLPRRIY 896
G H+ + N+ + DG SKE I+++ ATNRP LD A++R R ++I
Sbjct: 125 GAGLGGGHDEREQTLNQLLVEMDGFDSKEG--IIVMAATNRPDILDPALLRPGRFDKKIV 182
Query: 897 VDLPDAENRMKILRIFLAHESLESGFQFNELANATEGYSGSDLKNLCIAAAYRPVQE 953
VD PD R KIL I ++ L +A T G+ G+DL+NL AA +E
Sbjct: 183 VDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAARE 239
>pdb|4B4T|I Chain I, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 112 bits (281), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 71/232 (30%), Positives = 114/232 (49%), Gaps = 13/232 (5%)
Query: 729 FDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPXXXXXXXXXXXXXX 788
+ DIG LE + + E V LP+ P+L+ + +P KG++L+G P
Sbjct: 181 YSDIGGLESQIQEIKESVELPLTHPELYEEMGI-KPPKGVILYGAPGTGKTLLAKAVANQ 239
Query: 789 XXXNFISITGSTLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGAR-----GGA 843
F+ I GS L K+ GD +L + +F A + AP I+F+DE+D++ R GG
Sbjct: 240 TSATFLRIVGSELIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGG- 298
Query: 844 FEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPFDLDDAVIR--RLPRRIYVDLPD 901
E E R M E ++ DG + K+++ ATN+ LD A+IR R+ R+I + PD
Sbjct: 299 -EREIQRTML-ELLNQLDGFDDRGDVKVIM--ATNKIETLDPALIRPGRIDRKILFENPD 354
Query: 902 AENRMKILRIFLAHESLESGFQFNELANATEGYSGSDLKNLCIAAAYRPVQE 953
+ KIL I + +L L + SG+D++ +C A ++E
Sbjct: 355 LSTKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALRE 406
>pdb|4B4T|M Chain M, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 434
Score = 108 bits (269), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 68/227 (29%), Positives = 115/227 (50%), Gaps = 13/227 (5%)
Query: 729 FDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPXXXXXXXXXXXXXX 788
+ D+G L+ + L E ++LPM+R D F + P KG L++GPP
Sbjct: 180 YSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAP-KGALMYGPPGTGKTLLARACAAQ 238
Query: 789 XXXNFISITGSTLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEA 848
F+ + L + G+ KL + F+ A + AP IIF+DE+D++ R F+ E
Sbjct: 239 TNATFLKLAAPQLVQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKR---FDSEK 295
Query: 849 T-----RRMRNEFMSAWDGLRSKESQKILILGATNRPFDLDDAVIR--RLPRRIYVDLPD 901
+ +R E ++ DG S + ++ +L ATNR LD A++R RL R+I LP
Sbjct: 296 SGDREVQRTMLELLNQLDGFSSDD--RVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPS 353
Query: 902 AENRMKILRIFLAHESLESGFQFNELANATEGYSGSDLKNLCIAAAY 948
++R +IL+I + + + ELA +T+ ++G+ LK + + A
Sbjct: 354 EDSRAQILQIHSRKMTTDDDINWQELARSTDEFNGAQLKAVTVEAGM 400
>pdb|2R62|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R62|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R65|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|C Chain C, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|D Chain D, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|E Chain E, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
Length = 268
Score = 108 bits (269), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 73/226 (32%), Positives = 115/226 (50%), Gaps = 8/226 (3%)
Query: 727 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPXXXXXXXXXXXX 786
VRF D+ E+ K+ + E+V ++ P+ ++ P KG+LL GPP
Sbjct: 8 VRFKDMAGNEEAKEEVVEIVDF-LKYPERYANLGAKIP-KGVLLVGPPGTGKTLLAKAVA 65
Query: 787 XXXXXNFISITGSTLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGAR--GGAF 844
F S+ GS+ + G + LF A K AP IIF+DE+D++ +R GG
Sbjct: 66 GEAHVPFFSMGGSSFIEMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVV 125
Query: 845 EHEATR-RMRNEFMSAWDGLRSKESQKILILGATNRPFDLDDAVIR--RLPRRIYVDLPD 901
R + N+ ++ DG S E+ +++L ATNRP LD A++R R R++ VD PD
Sbjct: 126 SGNDEREQTLNQLLAEMDGFGS-ENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPD 184
Query: 902 AENRMKILRIFLAHESLESGFQFNELANATEGYSGSDLKNLCIAAA 947
R++IL++ + L + E+A T G +G+DL N+ AA
Sbjct: 185 FNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLANIINEAA 230
>pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh
Length = 257
Score = 107 bits (267), Expect = 4e-23, Method: Composition-based stats.
Identities = 71/228 (31%), Positives = 108/228 (47%), Gaps = 8/228 (3%)
Query: 724 EIGVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPXXXXXXXXX 783
+I F D+ ++ K+ + ELV +R P F + P KG+L+ GPP
Sbjct: 6 QIKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIP-KGVLMVGPPGTGKTLLAK 63
Query: 784 XXXXXXXXNFISITGSTLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGA 843
F +I+GS + G + +F A K AP IIF+DE+D++ RG
Sbjct: 64 AIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAG 123
Query: 844 FE--HEATRRMRNEFMSAWDGLRSKESQKILILGATNRPFDLDDAVIR--RLPRRIYVDL 899
H+ + N+ + DG E I+++ ATNRP LD A++R R R++ V L
Sbjct: 124 LGGGHDEREQTLNQMLVEMDGFEGNEG--IIVIAATNRPDVLDPALLRPGRFDRQVVVGL 181
Query: 900 PDAENRMKILRIFLAHESLESGFQFNELANATEGYSGSDLKNLCIAAA 947
PD R +IL++ + L +A T G+SG+DL NL AA
Sbjct: 182 PDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAA 229
>pdb|2QZ4|A Chain A, Human Paraplegin, Aaa Domain In Complex With Adp
Length = 262
Score = 94.7 bits (234), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 66/236 (27%), Positives = 110/236 (46%), Gaps = 11/236 (4%)
Query: 725 IGVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPXXXXXXXXXX 784
+GV F D+ + + K + E V ++ P+ F + P KG LL GPP
Sbjct: 1 MGVSFKDVAGMHEAKLEVREFVDY-LKSPERFLQLGAKVP-KGALLLGPPGCGKTLLAKA 58
Query: 785 XXXXXXXNFISITGSTLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARG--- 841
F+++ G+ G ++LF A AP I+++DE+D++ R
Sbjct: 59 VATEAQVPFLAMAGAEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTM 118
Query: 842 GAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPFDLDDAVIR--RLPRRIYVDL 899
F + + N+ + DG+ + + +++L +TNR LD A++R RL R +++DL
Sbjct: 119 SGFSNTEEEQTLNQLLVEMDGMGT--TDHVIVLASTNRADILDGALMRPGRLDRHVFIDL 176
Query: 900 PDAENRMKILRIFLAHESL--ESGFQFNELANATEGYSGSDLKNLCIAAAYRPVQE 953
P + R +I L L S F LA T G+SG+D+ N+C AA +E
Sbjct: 177 PTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAARE 232
>pdb|4B4T|K Chain K, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 428
Score = 92.8 bits (229), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 67/232 (28%), Positives = 110/232 (47%), Gaps = 8/232 (3%)
Query: 727 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPXXXXXXXXXXXX 786
V + D+G L+ K+ + E V LP+ + DL+ + + P +G+LL+GPP
Sbjct: 169 VTYADVGGLDMQKQEIREAVELPLVQADLYEQIGI-DPPRGVLLYGPPGTGKTMLVKAVA 227
Query: 787 XXXXXNFISITGSTLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGA--F 844
FI + GS K+ G+ ++ + +F A + AP IIF+DEVDS+ R A
Sbjct: 228 NSTKAAFIRVNGSEFVHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTG 287
Query: 845 EHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPFDLDDAVIR--RLPRRI-YVDLPD 901
+R+ E ++ DG +S + ++ ATNR LD A++R RL R+I + L D
Sbjct: 288 SDREVQRILIELLTQMDGF--DQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRD 345
Query: 902 AENRMKILRIFLAHESLESGFQFNELANATEGYSGSDLKNLCIAAAYRPVQE 953
R I + SL + L + SG+ + + A R V++
Sbjct: 346 RRERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRK 397
>pdb|2DHR|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 499
Score = 90.1 bits (222), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 60/183 (32%), Positives = 87/183 (47%), Gaps = 12/183 (6%)
Query: 763 RPCKGILLFGPPXXXXXXXXXXXXXXXXXNFISITGSTLTSKWFGDAEKLTKALFSFASK 822
R KG+LL GPP FI+ +GS + G + LF A +
Sbjct: 62 RIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKR 121
Query: 823 LAPVIIFVDEVDSL-----LGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGAT 877
AP I+F+DE+D++ G GG E E T N+ + DG ++ I+++ AT
Sbjct: 122 HAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTL---NQLLVEMDGF--EKDTAIVVMAAT 176
Query: 878 NRPFDLDDAVIR--RLPRRIYVDLPDAENRMKILRIFLAHESLESGFQFNELANATEGYS 935
NRP LD A++R R R+I +D PD + R +ILRI + L LA T G+
Sbjct: 177 NRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFV 236
Query: 936 GSD 938
G+D
Sbjct: 237 GAD 239
>pdb|4EIW|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 508
Score = 90.1 bits (222), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 60/183 (32%), Positives = 87/183 (47%), Gaps = 12/183 (6%)
Query: 763 RPCKGILLFGPPXXXXXXXXXXXXXXXXXNFISITGSTLTSKWFGDAEKLTKALFSFASK 822
R KG+LL GPP FI+ +GS + G + LF A +
Sbjct: 71 RIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKR 130
Query: 823 LAPVIIFVDEVDSL-----LGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGAT 877
AP I+F+DE+D++ G GG E E T N+ + DG ++ I+++ AT
Sbjct: 131 HAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTL---NQLLVEMDGF--EKDTAIVVMAAT 185
Query: 878 NRPFDLDDAVIR--RLPRRIYVDLPDAENRMKILRIFLAHESLESGFQFNELANATEGYS 935
NRP LD A++R R R+I +D PD + R +ILRI + L LA T G+
Sbjct: 186 NRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFV 245
Query: 936 GSD 938
G+D
Sbjct: 246 GAD 248
>pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
pdb|1IY0|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Amp-Pnp
From Thermus Thermophilus
pdb|1IY1|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Adp From
Thermus Thermophilus
Length = 254
Score = 87.0 bits (214), Expect = 5e-17, Method: Composition-based stats.
Identities = 59/180 (32%), Positives = 86/180 (47%), Gaps = 12/180 (6%)
Query: 766 KGILLFGPPXXXXXXXXXXXXXXXXXNFISITGSTLTSKWFGDAEKLTKALFSFASKLAP 825
KG+LL GPP FI+ +GS + G + LF A + AP
Sbjct: 50 KGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAP 109
Query: 826 VIIFVDEVDSL-----LGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRP 880
I+F+DE+D++ G GG E E T N+ + DG ++ I+++ ATNRP
Sbjct: 110 CIVFIDEIDAVGRKRGSGVGGGNDEREQTL---NQLLVEMDGF--EKDTAIVVMAATNRP 164
Query: 881 FDLDDAVIR--RLPRRIYVDLPDAENRMKILRIFLAHESLESGFQFNELANATEGYSGSD 938
LD A++R R R+I +D PD + R +ILRI + L LA T G+ G+D
Sbjct: 165 DILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGAD 224
>pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
Length = 278
Score = 86.7 bits (213), Expect = 7e-17, Method: Composition-based stats.
Identities = 59/180 (32%), Positives = 86/180 (47%), Gaps = 12/180 (6%)
Query: 766 KGILLFGPPXXXXXXXXXXXXXXXXXNFISITGSTLTSKWFGDAEKLTKALFSFASKLAP 825
KG+LL GPP FI+ +GS + G + LF A + AP
Sbjct: 74 KGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAP 133
Query: 826 VIIFVDEVDSL-----LGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRP 880
I+F+DE+D++ G GG E E T N+ + DG ++ I+++ ATNRP
Sbjct: 134 CIVFIDEIDAVGRKRGSGVGGGNDEREQTL---NQLLVEMDGF--EKDTAIVVMAATNRP 188
Query: 881 FDLDDAVIR--RLPRRIYVDLPDAENRMKILRIFLAHESLESGFQFNELANATEGYSGSD 938
LD A++R R R+I +D PD + R +ILRI + L LA T G+ G+D
Sbjct: 189 DILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGAD 248
>pdb|1KSF|X Chain X, Crystal Structure Of Clpa, An Hsp100 Chaperone And
Regulator Of Clpap Protease: Structural Basis Of
Differences In Function Of The Two Aaa+ Atpase Domains
pdb|1R6B|X Chain X, High Resolution Crystal Structure Of Clpa
Length = 758
Score = 34.7 bits (78), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 56/118 (47%), Gaps = 16/118 (13%)
Query: 798 GSTLT-SKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEF 856
GS L +K+ GD EK KAL + I+F+DE+ +++GA + +
Sbjct: 251 GSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPL 310
Query: 857 MSAWDGLRSKESQKILILGAT-----NRPFDLDDAVIRRLPRRIYVDLPDAENRMKIL 909
+S S KI ++G+T + F+ D A+ RR ++I + P E ++I+
Sbjct: 311 LS---------SGKIRVIGSTTYQEFSNIFEKDRALARRF-QKIDITEPSIEETVQII 358
>pdb|3A4X|A Chain A, Crystal Structures Of Catalytic Site Mutants Of Active
Domain 2 Of Thermostable Chitinase From Pyrococcus
Furiosus Complexed With Chito- Oligosaccharides
pdb|3A4X|B Chain B, Crystal Structures Of Catalytic Site Mutants Of Active
Domain 2 Of Thermostable Chitinase From Pyrococcus
Furiosus Complexed With Chito- Oligosaccharides
pdb|3AFB|A Chain A, Crystal Structures Of Catalytic Site Mutants Of Active
Domain 2 Of Chitinase From Pyrococcus Furiosus
pdb|3AFB|B Chain B, Crystal Structures Of Catalytic Site Mutants Of Active
Domain 2 Of Chitinase From Pyrococcus Furiosus
Length = 311
Score = 32.7 bits (73), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 24/41 (58%)
Query: 630 LSCTDLLHVNTDGVILTKQRAEKVVGWAKNHYLSSCSFPSV 670
+ T ++ VN D + T + A+++V WA H + S +F SV
Sbjct: 220 IGLTPMIGVNDDKSVFTLEDAQQLVDWAIQHKIGSLAFWSV 260
>pdb|3A4W|A Chain A, Crystal Structures Of Catalytic Site Mutants Of Active
Domain 2 Of Thermostable Chitinase From Pyrococcus
Furiosus Complexed With Chito- Oligosaccharides
pdb|3A4W|B Chain B, Crystal Structures Of Catalytic Site Mutants Of Active
Domain 2 Of Thermostable Chitinase From Pyrococcus
Furiosus Complexed With Chito- Oligosaccharides
Length = 311
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 24/41 (58%)
Query: 630 LSCTDLLHVNTDGVILTKQRAEKVVGWAKNHYLSSCSFPSV 670
+ T ++ VN D + T + A+++V WA H + S +F SV
Sbjct: 220 IGLTPMIGVNDDKSVFTLEDAQQLVDWAIQHKIGSLAFWSV 260
>pdb|2DSK|A Chain A, Crystal Structure Of Catalytic Domain Of Hyperthermophilic
Chitinase From Pyrococcus Furiosus
pdb|2DSK|B Chain B, Crystal Structure Of Catalytic Domain Of Hyperthermophilic
Chitinase From Pyrococcus Furiosus
Length = 311
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 24/41 (58%)
Query: 630 LSCTDLLHVNTDGVILTKQRAEKVVGWAKNHYLSSCSFPSV 670
+ T ++ VN D + T + A+++V WA H + S +F SV
Sbjct: 220 IGLTPMIGVNDDKSVFTLEDAQQLVDWAIQHKIGSLAFWSV 260
>pdb|4HSE|A Chain A, Crystal Structure Of Clpb Nbd1 In Complex With Guanidinium
Chloride And Adp
Length = 397
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 55/119 (46%), Gaps = 17/119 (14%)
Query: 798 GSTLT-SKWFGDAEKLTKALFS-FASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNE 855
GS L +K+ G+ E+ KA+ VI+F+DE+ +++GA +A ++
Sbjct: 98 GSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPA 157
Query: 856 FMSAWDGLRSKESQKILILGATN----RPFDLDDAVIRRLPRRIYVDLPDAENRMKILR 910
++ ++GAT R + D A+ RR + +YVD P E + ILR
Sbjct: 158 LARG----------ELRLIGATTLDEYREIEKDPALERRF-QPVYVDEPTVEETISILR 205
>pdb|1QVR|A Chain A, Crystal Structure Analysis Of Clpb
pdb|1QVR|B Chain B, Crystal Structure Analysis Of Clpb
pdb|1QVR|C Chain C, Crystal Structure Analysis Of Clpb
Length = 854
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 55/119 (46%), Gaps = 17/119 (14%)
Query: 798 GSTLT-SKWFGDAEKLTKALFS-FASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNE 855
GS L +K+ G+ E+ KA+ VI+F+DE+ +++GA +A ++
Sbjct: 235 GSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPA 294
Query: 856 FMSAWDGLRSKESQKILILGATN----RPFDLDDAVIRRLPRRIYVDLPDAENRMKILR 910
++ ++GAT R + D A+ RR + +YVD P E + ILR
Sbjct: 295 LARG----------ELRLIGATTLDEYREIEKDPALERRF-QPVYVDEPTVEETISILR 342
>pdb|1JBK|A Chain A, Crystal Structure Of The First Nucelotide Binding Domain
Of Clpb
Length = 195
Score = 31.6 bits (70), Expect = 2.3, Method: Composition-based stats.
Identities = 25/105 (23%), Positives = 47/105 (44%), Gaps = 14/105 (13%)
Query: 810 EKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQ 869
E+L L A + VI+F+DE+ +++GA +A ++
Sbjct: 101 ERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARG---------- 150
Query: 870 KILILGATN----RPFDLDDAVIRRLPRRIYVDLPDAENRMKILR 910
++ +GAT R + DA + R ++++V P E+ + ILR
Sbjct: 151 ELHCVGATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILR 195
>pdb|4D9K|A Chain A, Crystal Structure Of Escherichia Coli Diaminopropionate
Ammonia Lyase In Apo Form
pdb|4D9K|D Chain D, Crystal Structure Of Escherichia Coli Diaminopropionate
Ammonia Lyase In Apo Form
pdb|4D9K|B Chain B, Crystal Structure Of Escherichia Coli Diaminopropionate
Ammonia Lyase In Apo Form
pdb|4D9K|C Chain C, Crystal Structure Of Escherichia Coli Diaminopropionate
Ammonia Lyase In Apo Form
Length = 398
Score = 30.8 bits (68), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 5/51 (9%)
Query: 384 ILGKIMTSDGPKNAYTII--PDRA---LSSGQRGEVYEVNGDRAAVILDIS 429
+LG ++ P+N ++II PD+A SG +G++ V GD A ++ ++
Sbjct: 240 VLGYLVDVYSPQNLHSIIVEPDKADCIYRSGVKGDIVNVGGDMATIMAGLA 290
>pdb|4D9M|A Chain A, Crystal Structure Of Diaminopropionate Ammonia Lyase From
Escherichia Coli In Complex With Aminoacrylate-Plp
Azomethine Reaction Intermediate
pdb|4D9M|B Chain B, Crystal Structure Of Diaminopropionate Ammonia Lyase From
Escherichia Coli In Complex With Aminoacrylate-Plp
Azomethine Reaction Intermediate
Length = 398
Score = 30.8 bits (68), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 5/51 (9%)
Query: 384 ILGKIMTSDGPKNAYTII--PDRA---LSSGQRGEVYEVNGDRAAVILDIS 429
+LG ++ P+N ++II PD+A SG +G++ V GD A ++ ++
Sbjct: 240 VLGYLVDVYSPQNLHSIIVEPDKADCIYRSGVKGDIVNVGGDMATIMAGLA 290
>pdb|4D9I|A Chain A, Crystal Structure Of Holo Diaminopropionate Ammonia Lyase
From Escherichia Coli
pdb|4D9I|B Chain B, Crystal Structure Of Holo Diaminopropionate Ammonia Lyase
From Escherichia Coli
pdb|4D9N|A Chain A, Crystal Structure Of Diaminopropionate Ammonia Lyase From
Escherichia Coli In Complex With D-Serine
pdb|4D9N|B Chain B, Crystal Structure Of Diaminopropionate Ammonia Lyase From
Escherichia Coli In Complex With D-Serine
Length = 398
Score = 30.8 bits (68), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 5/51 (9%)
Query: 384 ILGKIMTSDGPKNAYTII--PDRA---LSSGQRGEVYEVNGDRAAVILDIS 429
+LG ++ P+N ++II PD+A SG +G++ V GD A ++ ++
Sbjct: 240 VLGYLVDVYSPQNLHSIIVEPDKADCIYRSGVKGDIVNVGGDMATIMAGLA 290
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.134 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,572,340
Number of Sequences: 62578
Number of extensions: 1146180
Number of successful extensions: 2871
Number of sequences better than 100.0: 46
Number of HSP's better than 100.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 2708
Number of HSP's gapped (non-prelim): 52
length of query: 1023
length of database: 14,973,337
effective HSP length: 109
effective length of query: 914
effective length of database: 8,152,335
effective search space: 7451234190
effective search space used: 7451234190
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.2 bits)