Query 001707
Match_columns 1023
No_of_seqs 576 out of 3459
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 07:24:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001707.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001707hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0733 Nuclear AAA ATPase (VC 100.0 1.3E-76 2.8E-81 674.8 42.4 473 473-1014 270-792 (802)
2 KOG0730 AAA+-type ATPase [Post 100.0 3.9E-70 8.4E-75 631.2 36.3 411 473-997 265-682 (693)
3 TIGR01243 CDC48 AAA family ATP 100.0 8.8E-60 1.9E-64 578.0 42.6 465 473-1012 259-731 (733)
4 KOG0737 AAA+-type ATPase [Post 100.0 2.2E-58 4.7E-63 507.1 29.8 372 638-1016 4-386 (386)
5 KOG0736 Peroxisome assembly fa 100.0 4.1E-55 9E-60 509.3 43.6 457 473-997 478-940 (953)
6 KOG0741 AAA+-type ATPase [Post 100.0 2.6E-52 5.5E-57 469.9 24.4 347 487-911 326-684 (744)
7 COG0464 SpoVK ATPases of the A 100.0 5.7E-50 1.2E-54 471.5 36.1 418 472-994 63-488 (494)
8 KOG0738 AAA+-type ATPase [Post 100.0 2.6E-49 5.7E-54 434.7 25.2 284 723-1012 205-490 (491)
9 COG1222 RPT1 ATP-dependent 26S 100.0 1.7E-47 3.7E-52 419.0 24.7 247 723-991 144-394 (406)
10 KOG0735 AAA+-type ATPase [Post 100.0 3.5E-45 7.6E-50 423.0 37.8 400 473-958 482-893 (952)
11 KOG0739 AAA+-type ATPase [Post 100.0 2.3E-44 5.1E-49 384.3 18.6 292 717-1014 120-439 (439)
12 KOG0733 Nuclear AAA ATPase (VC 100.0 9.6E-44 2.1E-48 406.4 20.7 289 725-1016 185-520 (802)
13 CHL00195 ycf46 Ycf46; Provisio 100.0 7.2E-38 1.6E-42 366.3 37.9 259 724-1010 222-484 (489)
14 KOG0734 AAA+-type ATPase conta 100.0 1.1E-39 2.5E-44 368.2 19.6 274 718-1015 292-567 (752)
15 KOG0732 AAA+-type ATPase conta 100.0 8.4E-40 1.8E-44 397.4 15.7 306 474-841 352-670 (1080)
16 KOG0740 AAA+-type ATPase [Post 100.0 4.8E-38 1E-42 357.0 18.6 289 714-1014 138-427 (428)
17 KOG0652 26S proteasome regulat 100.0 6.5E-37 1.4E-41 322.4 18.1 246 723-991 164-414 (424)
18 KOG0728 26S proteasome regulat 100.0 2.9E-36 6.3E-41 316.1 21.3 247 725-993 142-392 (404)
19 KOG0727 26S proteasome regulat 100.0 6.4E-36 1.4E-40 313.8 20.7 247 721-989 146-396 (408)
20 KOG0726 26S proteasome regulat 100.0 1.3E-36 2.8E-41 324.3 15.4 244 724-989 179-426 (440)
21 KOG0731 AAA+-type ATPase conta 100.0 7.9E-36 1.7E-40 355.6 21.4 247 723-992 304-556 (774)
22 COG1223 Predicted ATPase (AAA+ 100.0 1.3E-35 2.7E-40 313.2 20.5 245 725-995 116-361 (368)
23 PTZ00454 26S protease regulato 100.0 4.8E-35 1E-39 335.8 25.9 248 723-992 138-389 (398)
24 PRK03992 proteasome-activating 100.0 4.6E-34 9.9E-39 327.7 25.6 252 723-996 124-379 (389)
25 KOG0729 26S proteasome regulat 100.0 8.7E-35 1.9E-39 307.1 17.8 248 723-992 170-421 (435)
26 PTZ00361 26 proteosome regulat 100.0 4.4E-33 9.6E-38 322.0 22.7 246 724-991 177-426 (438)
27 TIGR01241 FtsH_fam ATP-depende 100.0 7.2E-33 1.6E-37 326.9 24.3 269 723-1014 48-320 (495)
28 COG0465 HflB ATP-dependent Zn 100.0 3.6E-33 7.9E-38 328.3 19.5 245 724-991 144-392 (596)
29 KOG0730 AAA+-type ATPase [Post 100.0 9.8E-33 2.1E-37 321.0 18.5 259 726-1014 181-441 (693)
30 COG1222 RPT1 ATP-dependent 26S 100.0 2.8E-32 6.2E-37 299.5 15.5 246 175-692 144-395 (406)
31 TIGR01242 26Sp45 26S proteasom 100.0 3.5E-31 7.6E-36 301.2 25.0 245 723-989 115-363 (364)
32 KOG0651 26S proteasome regulat 100.0 5.4E-32 1.2E-36 291.9 14.6 243 726-990 128-374 (388)
33 TIGR03689 pup_AAA proteasome A 100.0 1.2E-30 2.6E-35 305.8 24.9 275 723-1016 175-504 (512)
34 TIGR01243 CDC48 AAA family ATP 100.0 8.4E-31 1.8E-35 322.4 23.8 286 725-1014 173-460 (733)
35 CHL00176 ftsH cell division pr 100.0 2.9E-30 6.2E-35 310.8 23.6 244 723-989 176-423 (638)
36 KOG0737 AAA+-type ATPase [Post 100.0 4.7E-30 1E-34 283.6 16.0 281 161-692 71-362 (386)
37 PRK10733 hflB ATP-dependent me 100.0 2.6E-29 5.5E-34 304.6 23.7 262 723-1007 145-410 (644)
38 KOG0732 AAA+-type ATPase conta 100.0 1.7E-29 3.7E-34 308.0 16.8 266 724-996 259-532 (1080)
39 KOG0741 AAA+-type ATPase [Post 100.0 4.1E-29 8.9E-34 283.0 14.1 271 726-1003 215-504 (744)
40 CHL00206 ycf2 Ycf2; Provisiona 100.0 1.7E-28 3.6E-33 309.0 20.7 209 756-991 1622-1879(2281)
41 PLN00020 ribulose bisphosphate 100.0 1.1E-26 2.3E-31 259.5 24.7 221 727-954 112-355 (413)
42 KOG0736 Peroxisome assembly fa 99.9 5.4E-27 1.2E-31 275.1 18.8 307 127-692 622-935 (953)
43 KOG0738 AAA+-type ATPase [Post 99.9 9E-26 1.9E-30 249.6 18.2 274 163-692 194-472 (491)
44 COG0464 SpoVK ATPases of the A 99.9 3.1E-24 6.8E-29 253.4 17.9 260 161-692 217-486 (494)
45 KOG0739 AAA+-type ATPase [Post 99.9 9.8E-24 2.1E-28 226.7 12.9 237 163-649 115-353 (439)
46 TIGR02639 ClpA ATP-dependent C 99.9 5.2E-21 1.1E-25 235.8 35.6 388 473-955 262-716 (731)
47 KOG0740 AAA+-type ATPase [Post 99.9 9.3E-23 2E-27 232.6 14.0 259 176-692 147-407 (428)
48 CHL00195 ycf46 Ycf46; Provisio 99.9 2.6E-22 5.6E-27 235.8 16.7 156 473-692 306-466 (489)
49 PTZ00454 26S protease regulato 99.9 2.4E-22 5.3E-27 231.2 14.8 154 473-691 226-388 (398)
50 KOG0728 26S proteasome regulat 99.9 3.5E-22 7.7E-27 210.5 13.0 157 473-691 228-390 (404)
51 KOG0731 AAA+-type ATPase conta 99.9 6.5E-22 1.4E-26 237.1 16.2 158 473-692 391-556 (774)
52 KOG0734 AAA+-type ATPase conta 99.9 4.5E-22 9.8E-27 226.4 13.3 155 473-691 384-543 (752)
53 PRK03992 proteasome-activating 99.9 7.3E-22 1.6E-26 227.1 14.5 160 473-692 212-375 (389)
54 PRK11034 clpA ATP-dependent Cl 99.9 1.2E-19 2.6E-24 222.7 31.2 388 472-955 265-720 (758)
55 KOG0726 26S proteasome regulat 99.9 3.9E-22 8.4E-27 213.9 6.8 156 473-690 266-427 (440)
56 PTZ00361 26 proteosome regulat 99.8 6.9E-21 1.5E-25 221.0 12.6 159 473-691 264-426 (438)
57 TIGR01241 FtsH_fam ATP-depende 99.8 8E-21 1.7E-25 224.8 11.7 156 473-691 135-297 (495)
58 KOG0735 AAA+-type ATPase [Post 99.8 5E-20 1.1E-24 215.2 14.7 256 731-1014 409-674 (952)
59 CHL00181 cbbX CbbX; Provisiona 99.8 2.7E-19 5.9E-24 198.2 19.7 237 730-984 23-281 (287)
60 COG1223 Predicted ATPase (AAA+ 99.8 3.8E-20 8.3E-25 196.5 11.7 156 473-691 198-357 (368)
61 KOG0744 AAA+-type ATPase [Post 99.8 9.3E-20 2E-24 198.4 13.6 247 719-988 131-413 (423)
62 KOG0652 26S proteasome regulat 99.8 1.3E-19 2.7E-24 192.3 13.5 158 473-692 252-415 (424)
63 CHL00206 ycf2 Ycf2; Provisiona 99.8 1.1E-19 2.5E-24 230.2 15.4 157 472-691 1719-1879(2281)
64 TIGR02880 cbbX_cfxQ probable R 99.8 6.8E-19 1.5E-23 194.7 18.5 237 731-985 23-281 (284)
65 TIGR02881 spore_V_K stage V sp 99.8 5.3E-19 1.1E-23 192.9 17.2 217 728-956 4-244 (261)
66 PF00004 AAA: ATPase family as 99.8 3.7E-19 8E-24 171.1 13.5 130 768-899 1-132 (132)
67 KOG0742 AAA+-type ATPase [Post 99.8 1.2E-18 2.6E-23 193.8 18.0 207 727-944 352-586 (630)
68 COG0465 HflB ATP-dependent Zn 99.8 3.1E-19 6.7E-24 211.2 13.9 155 473-692 230-393 (596)
69 TIGR03689 pup_AAA proteasome A 99.8 3.5E-19 7.6E-24 209.6 13.7 123 473-642 273-406 (512)
70 CHL00176 ftsH cell division pr 99.8 4.6E-19 9.9E-24 214.3 13.2 156 473-691 263-425 (638)
71 KOG0729 26S proteasome regulat 99.8 2.9E-19 6.2E-24 190.0 9.6 158 473-692 258-421 (435)
72 KOG0727 26S proteasome regulat 99.8 8.1E-19 1.8E-23 185.5 12.6 159 473-691 236-398 (408)
73 TIGR01242 26Sp45 26S proteasom 99.8 1.5E-18 3.2E-23 198.0 12.0 152 473-689 203-363 (364)
74 KOG0651 26S proteasome regulat 99.8 1.5E-18 3.3E-23 188.3 10.0 155 473-692 213-376 (388)
75 PRK10733 hflB ATP-dependent me 99.7 4.8E-18 1E-22 206.7 12.7 157 473-692 232-395 (644)
76 PRK10865 protein disaggregatio 99.7 2.2E-15 4.8E-20 188.6 35.9 207 729-955 567-833 (857)
77 PLN00020 ribulose bisphosphate 99.7 4.8E-17 1E-21 182.6 13.6 121 473-623 195-326 (413)
78 KOG0743 AAA+-type ATPase [Post 99.7 2.4E-16 5.1E-21 179.6 17.8 219 727-956 198-429 (457)
79 TIGR03345 VI_ClpV1 type VI sec 99.7 3.7E-15 7.9E-20 186.3 27.9 202 731-955 567-835 (852)
80 CHL00095 clpC Clp protease ATP 99.7 5.5E-15 1.2E-19 184.8 29.0 206 730-955 509-786 (821)
81 TIGR03346 chaperone_ClpB ATP-d 99.7 1E-14 2.2E-19 182.9 29.0 206 730-955 565-830 (852)
82 PRK00080 ruvB Holliday junctio 99.7 7.7E-15 1.7E-19 165.3 23.9 244 727-1012 22-274 (328)
83 PF05496 RuvB_N: Holliday junc 99.7 7.8E-16 1.7E-20 163.4 14.3 188 727-944 21-223 (233)
84 TIGR00635 ruvB Holliday juncti 99.7 6.9E-15 1.5E-19 163.2 21.7 200 728-950 2-209 (305)
85 TIGR02639 ClpA ATP-dependent C 99.7 1.7E-15 3.6E-20 187.3 18.5 183 728-935 180-385 (731)
86 COG2256 MGS1 ATPase related to 99.6 4.2E-15 9.2E-20 167.1 18.6 167 727-933 21-204 (436)
87 TIGR00763 lon ATP-dependent pr 99.6 3.7E-15 8.1E-20 185.3 18.0 207 731-955 321-559 (775)
88 PRK00149 dnaA chromosomal repl 99.6 7.9E-14 1.7E-18 163.7 21.5 211 766-1011 149-371 (450)
89 PRK11034 clpA ATP-dependent Cl 99.6 3.5E-14 7.6E-19 174.9 18.7 197 728-948 184-407 (758)
90 TIGR00362 DnaA chromosomal rep 99.6 1.3E-13 2.9E-18 159.5 21.5 171 766-950 137-318 (405)
91 PRK12323 DNA polymerase III su 99.6 1.3E-13 2.8E-18 164.7 20.3 189 727-948 13-231 (700)
92 PRK14956 DNA polymerase III su 99.5 1.4E-13 3.1E-18 160.7 19.3 184 727-947 15-227 (484)
93 COG2255 RuvB Holliday junction 99.5 1.6E-13 3.5E-18 148.6 16.7 195 727-944 23-225 (332)
94 PRK07003 DNA polymerase III su 99.5 4E-13 8.6E-18 162.4 21.4 186 727-949 13-227 (830)
95 COG0542 clpA ATP-binding subun 99.5 1.6E-12 3.6E-17 158.0 25.8 406 473-953 250-757 (786)
96 PRK14962 DNA polymerase III su 99.5 3.7E-13 8.1E-18 158.6 19.4 182 727-945 11-221 (472)
97 TIGR00390 hslU ATP-dependent p 99.5 2.6E-13 5.6E-18 155.7 17.5 178 732-909 14-342 (441)
98 PRK05342 clpX ATP-dependent pr 99.5 2.6E-13 5.5E-18 157.4 16.4 234 722-955 62-383 (412)
99 PRK13342 recombination factor 99.5 1.1E-12 2.4E-17 152.4 21.8 180 727-947 9-201 (413)
100 PRK10865 protein disaggregatio 99.5 2.1E-13 4.5E-18 171.0 16.6 164 728-916 176-357 (857)
101 TIGR03345 VI_ClpV1 type VI sec 99.5 2.5E-13 5.4E-18 170.0 16.9 184 727-935 184-390 (852)
102 PRK14961 DNA polymerase III su 99.5 9E-13 1.9E-17 150.9 19.7 184 727-947 13-225 (363)
103 TIGR02928 orc1/cdc6 family rep 99.5 4.1E-12 8.9E-17 144.3 24.0 202 730-952 15-256 (365)
104 PRK14960 DNA polymerase III su 99.5 1E-12 2.2E-17 157.5 19.5 185 727-948 12-225 (702)
105 CHL00095 clpC Clp protease ATP 99.5 7.2E-13 1.6E-17 166.0 18.7 185 727-936 176-382 (821)
106 PRK05201 hslU ATP-dependent pr 99.5 5.9E-13 1.3E-17 152.8 16.3 179 732-910 17-345 (443)
107 PRK14088 dnaA chromosomal repl 99.5 2.1E-12 4.6E-17 151.3 21.3 169 766-947 131-310 (440)
108 PRK07994 DNA polymerase III su 99.5 1.4E-12 2.9E-17 157.9 19.8 184 727-947 13-225 (647)
109 PRK14949 DNA polymerase III su 99.5 1.4E-12 3E-17 160.2 19.9 184 727-947 13-225 (944)
110 PRK12422 chromosomal replicati 99.5 1.2E-12 2.7E-17 153.3 18.7 214 766-1011 142-366 (445)
111 TIGR02902 spore_lonB ATP-depen 99.5 1.1E-12 2.3E-17 157.1 18.4 217 727-987 62-330 (531)
112 TIGR03346 chaperone_ClpB ATP-d 99.5 8E-13 1.7E-17 166.1 17.8 183 728-935 171-376 (852)
113 PRK00411 cdc6 cell division co 99.5 4.5E-12 9.7E-17 145.6 22.0 223 729-991 29-284 (394)
114 PRK14958 DNA polymerase III su 99.5 1.5E-12 3.4E-17 154.7 18.5 186 727-949 13-227 (509)
115 PRK07940 DNA polymerase III su 99.5 2E-12 4.4E-17 149.3 18.9 185 728-942 3-214 (394)
116 PRK14086 dnaA chromosomal repl 99.4 4.8E-12 1E-16 151.6 22.1 166 767-947 316-493 (617)
117 PRK04195 replication factor C 99.4 1.4E-12 3.1E-17 154.4 17.6 185 727-946 11-203 (482)
118 KOG2028 ATPase related to the 99.4 3.2E-12 6.9E-17 141.7 17.9 208 727-990 135-369 (554)
119 PRK06645 DNA polymerase III su 99.4 3.5E-12 7.6E-17 151.2 19.3 186 727-949 18-236 (507)
120 PRK08691 DNA polymerase III su 99.4 3.6E-12 7.8E-17 154.0 19.2 186 727-949 13-227 (709)
121 PRK14964 DNA polymerase III su 99.4 3.8E-12 8.2E-17 150.1 18.8 186 727-949 10-224 (491)
122 PF05673 DUF815: Protein of un 99.4 5.5E-12 1.2E-16 135.8 18.1 189 726-944 23-243 (249)
123 KOG2004 Mitochondrial ATP-depe 99.4 1.9E-12 4.1E-17 153.0 15.2 166 730-914 411-597 (906)
124 PRK12402 replication factor C 99.4 8.7E-12 1.9E-16 139.7 19.4 184 727-942 12-226 (337)
125 PRK14951 DNA polymerase III su 99.4 5.8E-12 1.3E-16 152.1 19.1 186 727-949 13-232 (618)
126 PLN03025 replication factor C 99.4 8.4E-12 1.8E-16 140.4 19.1 183 727-944 10-202 (319)
127 TIGR03420 DnaA_homol_Hda DnaA 99.4 6.8E-12 1.5E-16 132.9 17.4 187 727-950 12-209 (226)
128 PRK05563 DNA polymerase III su 99.4 8.4E-12 1.8E-16 150.2 20.1 185 727-948 13-226 (559)
129 PRK14087 dnaA chromosomal repl 99.4 1.9E-11 4.2E-16 143.6 22.5 212 766-1011 142-370 (450)
130 PRK14969 DNA polymerase III su 99.4 6.1E-12 1.3E-16 150.4 18.3 185 727-948 13-226 (527)
131 PRK14959 DNA polymerase III su 99.4 1.2E-11 2.5E-16 148.8 20.6 185 727-945 13-223 (624)
132 PRK10787 DNA-binding ATP-depen 99.4 1.1E-11 2.5E-16 153.9 21.0 226 731-987 323-580 (784)
133 PRK14963 DNA polymerase III su 99.4 8.9E-12 1.9E-16 148.1 19.1 184 727-947 11-222 (504)
134 TIGR02397 dnaX_nterm DNA polym 99.4 9.3E-12 2E-16 140.7 18.4 185 727-948 11-224 (355)
135 PRK08903 DnaA regulatory inact 99.4 1.9E-11 4.1E-16 130.4 19.3 200 727-987 15-224 (227)
136 PRK14957 DNA polymerase III su 99.4 1.3E-11 2.9E-16 147.3 19.8 184 727-947 13-225 (546)
137 PRK08084 DNA replication initi 99.4 3.8E-11 8.3E-16 129.6 21.6 185 726-946 18-213 (235)
138 TIGR00382 clpX endopeptidase C 99.4 8.3E-12 1.8E-16 144.6 17.4 227 727-953 73-387 (413)
139 PHA02544 44 clamp loader, smal 99.4 1.4E-11 3.1E-16 137.4 18.4 155 727-913 18-173 (316)
140 PTZ00112 origin recognition co 99.4 1.5E-11 3.3E-16 149.3 19.4 190 730-942 755-978 (1164)
141 PRK07764 DNA polymerase III su 99.4 1.4E-11 3.1E-16 153.2 19.8 187 727-946 12-225 (824)
142 PRK06893 DNA replication initi 99.4 1.6E-11 3.4E-16 132.1 17.5 158 766-945 40-206 (229)
143 COG0466 Lon ATP-dependent Lon 99.4 8.1E-12 1.8E-16 148.7 15.9 172 731-914 324-509 (782)
144 PRK14952 DNA polymerase III su 99.3 2.7E-11 5.8E-16 145.8 20.1 188 727-947 10-224 (584)
145 PRK05896 DNA polymerase III su 99.3 2.3E-11 5.1E-16 145.7 19.1 183 727-946 13-224 (605)
146 PRK13341 recombination factor 99.3 2E-11 4.4E-16 150.2 18.0 181 727-948 25-223 (725)
147 PRK14965 DNA polymerase III su 99.3 2.6E-11 5.7E-16 146.4 18.4 182 727-945 13-223 (576)
148 PRK07133 DNA polymerase III su 99.3 4.1E-11 8.8E-16 146.1 19.6 190 727-947 15-224 (725)
149 PRK14970 DNA polymerase III su 99.3 6.2E-11 1.3E-15 135.6 19.5 184 727-947 14-214 (367)
150 PRK08727 hypothetical protein; 99.3 6.8E-11 1.5E-15 127.6 18.6 179 766-988 42-230 (233)
151 PRK06305 DNA polymerase III su 99.3 7.3E-11 1.6E-15 138.8 20.0 187 727-946 14-226 (451)
152 PRK06647 DNA polymerase III su 99.3 5.6E-11 1.2E-15 143.0 19.1 183 727-946 13-224 (563)
153 PRK14953 DNA polymerase III su 99.3 5.7E-11 1.2E-15 140.8 18.9 184 727-947 13-225 (486)
154 PF00308 Bac_DnaA: Bacterial d 99.3 8.1E-11 1.8E-15 126.0 18.0 198 725-948 3-214 (219)
155 PRK06620 hypothetical protein; 99.3 1.1E-10 2.5E-15 124.5 18.3 173 725-945 11-192 (214)
156 PRK05642 DNA replication initi 99.3 8.8E-11 1.9E-15 126.8 17.3 158 766-946 46-212 (234)
157 PRK00440 rfc replication facto 99.3 1.3E-10 2.8E-15 129.1 19.1 183 727-947 14-208 (319)
158 PRK08451 DNA polymerase III su 99.3 9.7E-11 2.1E-15 139.4 18.9 187 727-950 11-226 (535)
159 KOG0989 Replication factor C, 99.3 6.4E-11 1.4E-15 129.9 15.6 173 727-933 33-222 (346)
160 PRK14955 DNA polymerase III su 99.3 9.8E-11 2.1E-15 135.7 18.2 184 727-947 13-233 (397)
161 TIGR02640 gas_vesic_GvpN gas v 99.3 1.3E-10 2.8E-15 127.6 17.4 134 766-913 22-198 (262)
162 PRK09111 DNA polymerase III su 99.3 1.8E-10 3.9E-15 139.4 19.9 190 727-947 21-238 (598)
163 cd00009 AAA The AAA+ (ATPases 99.2 1.6E-10 3.5E-15 110.7 15.3 122 765-898 19-150 (151)
164 PRK14948 DNA polymerase III su 99.2 1.8E-10 3.9E-15 140.0 19.4 181 727-944 13-224 (620)
165 COG2812 DnaX DNA polymerase II 99.2 1E-10 2.2E-15 138.1 16.4 193 727-950 13-228 (515)
166 TIGR02903 spore_lon_C ATP-depe 99.2 3.5E-10 7.5E-15 137.8 20.3 224 727-990 151-431 (615)
167 PRK14954 DNA polymerase III su 99.2 3.7E-10 8E-15 137.0 20.1 182 727-945 13-231 (620)
168 PRK14950 DNA polymerase III su 99.2 4.2E-10 9.1E-15 136.5 19.1 182 727-945 13-224 (585)
169 PRK09087 hypothetical protein; 99.1 1.8E-09 3.9E-14 116.3 18.9 172 766-989 45-222 (226)
170 COG0593 DnaA ATPase involved i 99.1 1.5E-09 3.3E-14 125.0 18.9 172 765-951 113-295 (408)
171 COG1219 ClpX ATP-dependent pro 99.1 1.7E-10 3.7E-15 126.8 10.1 179 671-863 15-203 (408)
172 COG2607 Predicted ATPase (AAA+ 99.1 1.7E-09 3.6E-14 115.5 17.0 190 726-945 56-276 (287)
173 PRK14971 DNA polymerase III su 99.1 1.9E-09 4.1E-14 131.2 19.8 183 727-946 14-226 (614)
174 PRK13407 bchI magnesium chelat 99.1 9.1E-10 2E-14 124.8 14.7 161 727-913 5-216 (334)
175 TIGR01650 PD_CobS cobaltochela 99.1 7E-10 1.5E-14 124.8 12.8 140 765-914 64-234 (327)
176 PRK09112 DNA polymerase III su 99.1 5E-09 1.1E-13 119.8 19.7 189 727-947 20-245 (351)
177 KOG1969 DNA replication checkp 99.1 1.2E-09 2.7E-14 130.1 15.0 167 766-951 327-516 (877)
178 COG1474 CDC6 Cdc6-related prot 99.1 6.2E-09 1.3E-13 119.6 19.4 199 732-953 19-248 (366)
179 PHA02244 ATPase-like protein 99.0 1.9E-09 4.1E-14 122.7 14.7 125 766-902 120-263 (383)
180 PRK05564 DNA polymerase III su 99.0 9.8E-09 2.1E-13 115.3 19.3 169 728-933 2-182 (313)
181 CHL00081 chlI Mg-protoporyphyr 99.0 1.4E-08 2.9E-13 115.8 20.6 161 726-913 13-232 (350)
182 PRK07471 DNA polymerase III su 99.0 8.3E-09 1.8E-13 118.5 18.5 183 727-943 16-239 (365)
183 smart00382 AAA ATPases associa 99.0 2E-09 4.4E-14 101.7 11.4 127 766-900 3-147 (148)
184 TIGR00678 holB DNA polymerase 99.0 9.3E-09 2E-13 106.8 15.4 143 764-933 13-183 (188)
185 COG0542 clpA ATP-binding subun 99.0 5E-09 1.1E-13 128.2 14.9 183 727-934 167-372 (786)
186 PF00004 AAA: ATPase family as 99.0 2.5E-09 5.3E-14 102.9 9.5 81 473-591 45-132 (132)
187 TIGR03015 pepcterm_ATPase puta 98.9 8.8E-08 1.9E-12 104.3 21.8 192 766-990 44-267 (269)
188 PF07728 AAA_5: AAA domain (dy 98.9 4E-09 8.6E-14 103.9 10.0 112 767-891 1-139 (139)
189 PRK07399 DNA polymerase III su 98.9 2.6E-08 5.6E-13 112.4 17.4 183 728-944 2-223 (314)
190 TIGR02030 BchI-ChlI magnesium 98.9 3.7E-08 8E-13 112.0 18.1 160 728-913 2-219 (337)
191 PRK11331 5-methylcytosine-spec 98.9 1.1E-08 2.4E-13 119.2 14.0 143 729-899 174-357 (459)
192 COG0470 HolB ATPase involved i 98.9 3.4E-08 7.3E-13 109.9 17.4 148 731-909 2-177 (325)
193 TIGR02442 Cob-chelat-sub cobal 98.9 1.4E-08 2.9E-13 124.5 15.3 161 728-914 2-215 (633)
194 COG0714 MoxR-like ATPases [Gen 98.9 6.4E-09 1.4E-13 117.6 11.3 135 766-912 44-202 (329)
195 PRK05707 DNA polymerase III su 98.9 4.6E-08 1E-12 111.0 17.5 148 764-934 21-196 (328)
196 COG1220 HslU ATP-dependent pro 98.9 1.1E-08 2.3E-13 113.5 11.9 178 732-910 17-346 (444)
197 COG1224 TIP49 DNA helicase TIP 98.9 1.3E-07 2.8E-12 105.9 20.1 91 879-989 341-432 (450)
198 KOG0745 Putative ATP-dependent 98.8 5E-08 1.1E-12 111.1 15.7 98 766-863 227-332 (564)
199 PRK08058 DNA polymerase III su 98.8 9.9E-08 2.1E-12 108.3 18.0 149 728-911 3-180 (329)
200 PF07724 AAA_2: AAA domain (Cd 98.8 1.6E-08 3.5E-13 104.6 10.0 115 764-881 2-131 (171)
201 PF01078 Mg_chelatase: Magnesi 98.8 3.4E-09 7.3E-14 112.2 4.5 46 728-789 1-46 (206)
202 PF06068 TIP49: TIP49 C-termin 98.8 7.1E-08 1.5E-12 109.3 15.1 66 727-801 21-88 (398)
203 TIGR00764 lon_rel lon-related 98.8 8.8E-08 1.9E-12 116.7 17.1 51 726-792 14-64 (608)
204 PRK04132 replication factor C 98.8 6.9E-08 1.5E-12 120.3 16.0 160 764-947 563-736 (846)
205 smart00350 MCM minichromosome 98.8 6.5E-08 1.4E-12 115.8 14.8 167 731-914 204-401 (509)
206 KOG0991 Replication factor C, 98.8 7.5E-08 1.6E-12 102.5 13.3 173 727-933 24-206 (333)
207 PRK11608 pspF phage shock prot 98.7 2.3E-07 5.1E-12 105.2 17.0 195 728-950 4-240 (326)
208 TIGR00602 rad24 checkpoint pro 98.7 3E-07 6.5E-12 112.0 18.6 196 727-950 81-328 (637)
209 TIGR01817 nifA Nif-specific re 98.7 1.1E-07 2.4E-12 114.3 14.4 193 727-950 193-428 (534)
210 TIGR02974 phageshock_pspF psp 98.7 4.8E-07 1E-11 102.8 18.1 169 766-950 23-233 (329)
211 KOG2227 Pre-initiation complex 98.7 1E-06 2.3E-11 101.7 20.1 232 731-991 151-417 (529)
212 KOG1514 Origin recognition com 98.7 6.3E-07 1.4E-11 107.4 18.7 227 733-993 399-659 (767)
213 COG1221 PspF Transcriptional r 98.7 9E-08 2E-12 110.4 11.4 197 726-951 74-310 (403)
214 KOG0744 AAA+-type ATPase [Post 98.7 1.1E-07 2.3E-12 105.3 11.2 74 171-250 131-204 (423)
215 TIGR02031 BchD-ChlD magnesium 98.7 2.6E-07 5.6E-12 112.5 15.8 136 766-913 17-174 (589)
216 PRK08116 hypothetical protein; 98.7 8E-08 1.7E-12 106.2 10.1 130 765-911 114-258 (268)
217 PRK13531 regulatory ATPase Rav 98.6 1.8E-07 3.9E-12 110.1 13.1 152 732-912 22-193 (498)
218 PRK15429 formate hydrogenlyase 98.6 2.7E-07 5.8E-12 114.3 15.4 196 727-950 373-609 (686)
219 KOG0742 AAA+-type ATPase [Post 98.6 2.3E-07 5E-12 105.0 13.2 97 473-608 430-531 (630)
220 PRK12377 putative replication 98.6 1.6E-07 3.5E-12 102.6 11.6 107 716-836 60-175 (248)
221 PRK06871 DNA polymerase III su 98.6 1.5E-06 3.3E-11 98.5 19.6 128 764-912 23-178 (325)
222 PF07726 AAA_3: ATPase family 98.6 1.1E-08 2.5E-13 100.7 2.1 108 767-891 1-129 (131)
223 PRK15424 propionate catabolism 98.6 5.5E-07 1.2E-11 108.2 16.4 195 727-949 216-464 (538)
224 TIGR00368 Mg chelatase-related 98.6 2.5E-07 5.4E-12 110.3 13.4 146 727-903 189-394 (499)
225 PF05621 TniB: Bacterial TniB 98.6 1.9E-06 4.1E-11 96.1 19.2 177 766-953 62-272 (302)
226 TIGR02329 propionate_PrpR prop 98.6 2.8E-07 6.2E-12 110.5 13.6 195 727-949 209-449 (526)
227 PRK05022 anaerobic nitric oxid 98.6 9.6E-07 2.1E-11 105.9 18.0 196 729-952 186-422 (509)
228 PRK11388 DNA-binding transcrip 98.6 8.6E-07 1.9E-11 109.0 17.9 193 727-950 322-554 (638)
229 PRK10820 DNA-binding transcrip 98.6 8.2E-07 1.8E-11 106.7 17.0 197 726-950 200-437 (520)
230 CHL00181 cbbX CbbX; Provisiona 98.6 4.4E-07 9.5E-12 101.3 13.0 98 475-608 115-212 (287)
231 PRK07993 DNA polymerase III su 98.6 1.6E-06 3.5E-11 98.8 17.6 152 763-935 22-198 (334)
232 PRK07952 DNA replication prote 98.6 3.3E-07 7.2E-12 100.0 11.3 107 716-836 58-174 (244)
233 PRK06964 DNA polymerase III su 98.5 7.2E-07 1.6E-11 101.8 13.3 133 763-912 19-203 (342)
234 smart00763 AAA_PrkA PrkA AAA d 98.5 1.1E-06 2.3E-11 100.4 14.5 63 728-798 48-118 (361)
235 PF13177 DNA_pol3_delta2: DNA 98.5 7E-07 1.5E-11 91.5 11.9 133 734-899 1-160 (162)
236 COG3829 RocR Transcriptional r 98.5 3.2E-07 7E-12 107.8 10.4 199 725-948 240-477 (560)
237 PRK08769 DNA polymerase III su 98.5 2.9E-06 6.4E-11 96.0 17.5 169 735-938 9-205 (319)
238 PF00158 Sigma54_activat: Sigm 98.5 9.5E-07 2.1E-11 91.3 12.5 69 766-837 23-106 (168)
239 COG2204 AtoC Response regulato 98.5 5.8E-07 1.3E-11 105.4 12.1 203 727-953 138-377 (464)
240 TIGR00763 lon ATP-dependent pr 98.5 1.7E-06 3.6E-11 108.7 16.7 99 478-607 408-507 (775)
241 TIGR02880 cbbX_cfxQ probable R 98.5 7.7E-07 1.7E-11 99.2 12.2 96 474-608 113-211 (284)
242 PRK06090 DNA polymerase III su 98.5 7E-06 1.5E-10 93.0 19.2 144 735-911 8-178 (319)
243 TIGR02881 spore_V_K stage V sp 98.5 2E-06 4.4E-11 94.3 14.0 112 475-624 98-209 (261)
244 COG3604 FhlA Transcriptional r 98.4 1E-06 2.3E-11 102.5 11.9 204 724-950 217-456 (550)
245 COG1239 ChlI Mg-chelatase subu 98.4 1.8E-06 3.9E-11 99.3 13.7 163 727-915 14-234 (423)
246 PRK08181 transposase; Validate 98.4 5.3E-07 1.1E-11 99.8 7.6 71 765-837 106-180 (269)
247 TIGR02915 PEP_resp_reg putativ 98.4 5.2E-06 1.1E-10 97.4 15.6 167 766-951 163-373 (445)
248 PF01637 Arch_ATPase: Archaeal 98.3 3E-06 6.4E-11 88.9 10.9 179 733-935 2-228 (234)
249 PF03215 Rad17: Rad17 cell cyc 98.3 1.2E-05 2.6E-10 96.5 17.1 199 727-951 16-269 (519)
250 KOG1942 DNA helicase, TBP-inte 98.3 1.5E-05 3.2E-10 87.6 16.0 52 879-931 347-399 (456)
251 PRK05342 clpX ATP-dependent pr 98.3 1.2E-05 2.6E-10 94.1 16.2 82 162-260 64-145 (412)
252 PRK08699 DNA polymerase III su 98.3 5.5E-06 1.2E-10 94.1 13.0 132 763-911 19-183 (325)
253 PRK10923 glnG nitrogen regulat 98.3 6.8E-06 1.5E-10 97.1 14.0 191 729-950 137-371 (469)
254 COG0606 Predicted ATPase with 98.3 3.6E-07 7.8E-12 106.2 2.8 48 726-789 175-222 (490)
255 PRK06835 DNA replication prote 98.3 4.7E-06 1E-10 94.8 11.8 69 766-836 184-258 (329)
256 KOG2035 Replication factor C, 98.3 2.3E-05 5E-10 85.8 16.1 175 728-933 11-220 (351)
257 PTZ00111 DNA replication licen 98.3 3.9E-06 8.4E-11 104.8 11.6 170 731-913 451-657 (915)
258 PRK08939 primosomal protein Dn 98.3 3E-06 6.5E-11 95.5 9.6 70 765-836 156-229 (306)
259 COG1484 DnaC DNA replication p 98.2 5.3E-06 1.1E-10 91.2 11.0 71 764-836 104-179 (254)
260 PRK11361 acetoacetate metaboli 98.2 1.4E-05 3E-10 94.0 15.2 166 766-950 167-376 (457)
261 PF01695 IstB_IS21: IstB-like 98.2 6.4E-07 1.4E-11 93.3 3.5 71 763-835 45-119 (178)
262 PRK05201 hslU ATP-dependent pr 98.2 6.2E-05 1.3E-09 87.7 20.0 67 190-260 21-87 (443)
263 PRK06526 transposase; Provisio 98.2 1.8E-06 3.8E-11 94.9 6.9 73 762-836 95-171 (254)
264 PF13173 AAA_14: AAA domain 98.2 3.2E-06 6.8E-11 82.9 7.6 69 766-836 3-73 (128)
265 PRK13765 ATP-dependent proteas 98.2 2.1E-05 4.6E-10 96.3 15.9 48 727-790 28-75 (637)
266 PF14532 Sigma54_activ_2: Sigm 98.2 2.8E-06 6E-11 84.3 6.3 58 766-837 22-82 (138)
267 PRK09183 transposase/IS protei 98.2 3.7E-06 7.9E-11 92.6 7.5 72 764-836 101-176 (259)
268 PRK09862 putative ATP-dependen 98.1 5.1E-06 1.1E-10 99.2 9.0 145 728-903 189-391 (506)
269 PF13401 AAA_22: AAA domain; P 98.1 1.4E-05 3E-10 77.3 10.2 97 766-877 5-125 (131)
270 TIGR00390 hslU ATP-dependent p 98.1 0.00013 2.9E-09 85.0 19.7 68 189-260 17-84 (441)
271 KOG2680 DNA helicase TIP49, TB 98.1 4.8E-05 1E-09 83.9 14.8 91 879-989 338-429 (454)
272 KOG0990 Replication factor C, 98.1 1.1E-05 2.3E-10 89.9 9.5 158 725-917 36-207 (360)
273 TIGR01818 ntrC nitrogen regula 98.1 2.6E-05 5.7E-10 91.8 13.2 167 766-951 158-368 (463)
274 KOG1051 Chaperone HSP104 and r 98.1 1.9E-05 4.1E-10 98.6 12.4 127 731-879 563-710 (898)
275 TIGR00382 clpX endopeptidase C 98.1 4.1E-05 8.9E-10 89.5 14.1 83 161-260 69-153 (413)
276 PRK15115 response regulator Gl 98.1 5.6E-05 1.2E-09 88.7 15.2 166 766-950 158-367 (444)
277 cd01120 RecA-like_NTPases RecA 98.1 2.8E-05 6.1E-10 76.7 10.8 72 768-839 2-100 (165)
278 PRK00080 ruvB Holliday junctio 98.0 8.1E-05 1.8E-09 84.5 15.6 60 563-623 151-210 (328)
279 PF12775 AAA_7: P-loop contain 98.0 2.9E-06 6.4E-11 94.1 3.5 140 765-915 33-195 (272)
280 PF05729 NACHT: NACHT domain 98.0 2.9E-05 6.3E-10 77.3 9.9 140 767-915 2-165 (166)
281 PRK06921 hypothetical protein; 98.0 1.9E-05 4.2E-10 87.3 9.1 68 765-835 117-188 (266)
282 TIGR00635 ruvB Holliday juncti 98.0 0.0001 2.2E-09 82.2 14.6 60 563-623 130-189 (305)
283 COG1241 MCM2 Predicted ATPase 97.9 7.9E-05 1.7E-09 91.3 13.1 171 731-915 287-485 (682)
284 PF12774 AAA_6: Hydrolytic ATP 97.9 0.00022 4.9E-09 77.5 15.0 128 766-909 33-176 (231)
285 KOG0478 DNA replication licens 97.8 0.00011 2.5E-09 88.2 12.4 177 731-913 430-626 (804)
286 PRK05917 DNA polymerase III su 97.8 0.0003 6.4E-09 78.8 14.8 118 763-900 17-154 (290)
287 PF00931 NB-ARC: NB-ARC domain 97.8 0.00015 3.3E-09 79.6 12.1 157 764-942 18-202 (287)
288 PRK10365 transcriptional regul 97.8 0.00021 4.6E-09 83.6 13.9 166 765-949 162-371 (441)
289 PF03969 AFG1_ATPase: AFG1-lik 97.8 0.00011 2.3E-09 84.9 10.8 103 762-880 59-168 (362)
290 PRK13406 bchD magnesium chelat 97.8 8.7E-05 1.9E-09 90.4 10.5 127 766-904 26-173 (584)
291 KOG1970 Checkpoint RAD17-RFC c 97.8 0.00073 1.6E-08 80.1 17.4 173 766-951 111-321 (634)
292 PRK07276 DNA polymerase III su 97.7 0.0013 2.8E-08 73.8 18.3 154 763-943 22-198 (290)
293 PRK05818 DNA polymerase III su 97.7 0.00078 1.7E-08 74.3 15.1 121 762-900 4-147 (261)
294 TIGR02237 recomb_radB DNA repa 97.7 0.00035 7.5E-09 73.7 11.6 79 759-838 7-111 (209)
295 KOG2228 Origin recognition com 97.7 0.00017 3.8E-09 81.0 9.6 161 731-913 25-219 (408)
296 PLN03210 Resistant to P. syrin 97.6 0.0006 1.3E-08 89.6 16.1 172 728-935 182-389 (1153)
297 cd01124 KaiC KaiC is a circadi 97.6 0.00045 9.8E-09 71.0 11.8 71 768-838 2-109 (187)
298 TIGR01618 phage_P_loop phage n 97.6 0.00015 3.3E-09 78.2 7.6 22 765-786 12-33 (220)
299 PRK07132 DNA polymerase III su 97.6 0.0025 5.4E-08 71.9 17.5 125 765-911 18-160 (299)
300 PF00493 MCM: MCM2/3/5 family 97.6 5.1E-05 1.1E-09 86.5 4.0 163 731-916 25-224 (331)
301 KOG2170 ATPase of the AAA+ sup 97.5 0.0021 4.6E-08 71.7 15.0 131 732-881 84-226 (344)
302 PRK00771 signal recognition pa 97.5 0.0081 1.8E-07 71.2 21.0 198 764-989 94-332 (437)
303 PHA00729 NTP-binding motif con 97.5 0.00015 3.2E-09 78.5 5.9 27 766-792 18-44 (226)
304 KOG1968 Replication factor C, 97.5 0.00017 3.7E-09 90.8 7.3 164 767-949 359-535 (871)
305 PRK11823 DNA repair protein Ra 97.4 0.001 2.2E-08 79.0 12.9 101 759-860 75-194 (446)
306 PF05496 RuvB_N: Holliday junc 97.4 0.00034 7.5E-09 75.5 7.9 88 486-603 102-190 (233)
307 COG3267 ExeA Type II secretory 97.4 0.004 8.6E-08 68.3 15.6 174 767-952 53-255 (269)
308 cd01121 Sms Sms (bacterial rad 97.4 0.0014 2.9E-08 76.2 12.9 99 762-860 79-196 (372)
309 COG1618 Predicted nucleotide k 97.4 0.0024 5.1E-08 65.7 12.9 25 765-789 5-29 (179)
310 PF00910 RNA_helicase: RNA hel 97.4 0.00018 4E-09 68.6 4.6 23 768-790 1-23 (107)
311 PF14516 AAA_35: AAA-like doma 97.4 0.0043 9.3E-08 70.9 16.2 160 763-935 29-233 (331)
312 PRK09361 radB DNA repair and r 97.3 0.0016 3.4E-08 69.7 11.5 79 759-839 18-122 (225)
313 PF13207 AAA_17: AAA domain; P 97.3 0.0002 4.4E-09 68.5 4.2 31 768-798 2-32 (121)
314 TIGR02012 tigrfam_recA protein 97.3 0.0013 2.7E-08 74.9 11.0 80 759-839 50-148 (321)
315 KOG2383 Predicted ATPase [Gene 97.3 0.0019 4.1E-08 74.3 11.8 158 762-947 111-297 (467)
316 COG3283 TyrR Transcriptional r 97.2 0.0025 5.5E-08 72.3 12.2 193 727-947 201-429 (511)
317 PRK04841 transcriptional regul 97.2 0.0048 1E-07 78.6 16.2 153 765-935 32-219 (903)
318 KOG0482 DNA replication licens 97.2 0.0031 6.6E-08 74.1 12.6 213 731-952 343-591 (721)
319 PRK10787 DNA-binding ATP-depen 97.2 0.0032 7E-08 79.5 13.9 42 563-606 466-507 (784)
320 TIGR02640 gas_vesic_GvpN gas v 97.2 0.0027 5.8E-08 70.1 11.6 36 220-257 20-55 (262)
321 PRK08118 topology modulation p 97.1 0.0008 1.7E-08 69.4 6.5 32 767-798 3-34 (167)
322 PF05707 Zot: Zonular occluden 97.1 0.00087 1.9E-08 70.6 6.9 122 768-899 3-145 (193)
323 TIGR03877 thermo_KaiC_1 KaiC d 97.1 0.0043 9.3E-08 67.4 12.4 40 759-799 16-58 (237)
324 cd00983 recA RecA is a bacter 97.1 0.0022 4.7E-08 73.1 10.5 80 759-839 50-148 (325)
325 PRK00131 aroK shikimate kinase 97.1 0.00048 1E-08 69.7 4.7 34 764-797 3-36 (175)
326 PF13191 AAA_16: AAA ATPase do 97.1 0.0015 3.3E-08 66.5 8.3 59 732-801 2-63 (185)
327 PRK08533 flagellar accessory p 97.1 0.0034 7.4E-08 68.1 11.1 76 762-837 21-130 (230)
328 cd01394 radB RadB. The archaea 97.1 0.0042 9.2E-08 66.0 11.6 77 759-837 14-116 (218)
329 COG5271 MDN1 AAA ATPase contai 97.1 0.0016 3.4E-08 83.9 9.3 136 765-914 1543-1704(4600)
330 PF13604 AAA_30: AAA domain; P 97.1 0.002 4.3E-08 68.2 8.8 98 766-879 19-132 (196)
331 KOG0480 DNA replication licens 97.0 0.003 6.6E-08 75.9 10.5 199 730-947 345-571 (764)
332 PRK07261 topology modulation p 97.0 0.0014 3.1E-08 67.7 6.8 33 767-799 2-34 (171)
333 PRK06067 flagellar accessory p 97.0 0.0046 9.9E-08 66.7 10.9 78 759-837 20-133 (234)
334 PRK12724 flagellar biosynthesi 97.0 0.017 3.6E-07 68.0 16.0 112 765-886 223-352 (432)
335 TIGR01425 SRP54_euk signal rec 97.0 0.086 1.9E-06 62.4 22.1 37 764-800 99-138 (429)
336 KOG1051 Chaperone HSP104 and r 97.0 0.0042 9E-08 78.4 11.8 139 766-915 209-365 (898)
337 PRK14962 DNA polymerase III su 97.0 0.014 3E-07 70.0 15.5 90 485-623 117-206 (472)
338 KOG2543 Origin recognition com 97.0 0.0095 2.1E-07 68.4 13.4 156 732-912 8-192 (438)
339 cd01129 PulE-GspE PulE/GspE Th 96.9 0.0021 4.5E-08 71.3 8.0 94 727-835 57-160 (264)
340 PF13671 AAA_33: AAA domain; P 96.9 0.002 4.4E-08 63.3 6.8 28 768-795 2-29 (143)
341 PRK10867 signal recognition pa 96.9 0.09 2E-06 62.4 21.4 74 763-836 98-195 (433)
342 PRK09376 rho transcription ter 96.9 0.0043 9.3E-08 72.2 10.0 73 766-838 170-270 (416)
343 PF06745 KaiC: KaiC; InterPro 96.9 0.0085 1.8E-07 64.2 11.7 98 759-861 14-148 (226)
344 cd01393 recA_like RecA is a b 96.8 0.0081 1.8E-07 64.0 11.2 41 759-800 14-63 (226)
345 PRK15455 PrkA family serine pr 96.8 0.0013 2.9E-08 79.2 5.6 64 727-798 73-137 (644)
346 KOG0477 DNA replication licens 96.8 0.013 2.7E-07 70.6 13.3 166 731-914 450-651 (854)
347 PRK09354 recA recombinase A; P 96.8 0.007 1.5E-07 69.6 11.1 79 759-838 55-152 (349)
348 PHA02774 E1; Provisional 96.8 0.0084 1.8E-07 72.6 12.0 33 765-797 434-467 (613)
349 cd01123 Rad51_DMC1_radA Rad51_ 96.8 0.0083 1.8E-07 64.3 11.0 79 759-838 14-129 (235)
350 PRK05800 cobU adenosylcobinami 96.8 0.0096 2.1E-07 61.9 11.0 69 767-839 3-91 (170)
351 PRK13947 shikimate kinase; Pro 96.8 0.0012 2.7E-08 67.2 4.2 31 767-797 3-33 (171)
352 PRK04296 thymidine kinase; Pro 96.8 0.0091 2E-07 62.9 10.8 69 767-836 4-90 (190)
353 TIGR03878 thermo_KaiC_2 KaiC d 96.8 0.012 2.5E-07 65.1 12.1 40 759-799 31-73 (259)
354 TIGR00416 sms DNA repair prote 96.8 0.011 2.4E-07 70.4 12.7 79 759-838 89-184 (454)
355 PRK10536 hypothetical protein; 96.8 0.0077 1.7E-07 66.6 10.4 22 767-788 76-97 (262)
356 PF06309 Torsin: Torsin; Inte 96.8 0.0084 1.8E-07 59.5 9.6 52 731-789 26-77 (127)
357 PRK13342 recombination factor 96.8 0.019 4.1E-07 67.6 14.4 75 485-607 92-166 (413)
358 PHA02624 large T antigen; Prov 96.8 0.0068 1.5E-07 73.6 10.7 122 763-899 429-561 (647)
359 PRK03839 putative kinase; Prov 96.7 0.0014 3E-08 67.8 4.2 31 767-797 2-32 (180)
360 cd00464 SK Shikimate kinase (S 96.7 0.0015 3.2E-08 65.0 4.1 31 767-797 1-31 (154)
361 PRK12723 flagellar biosynthesi 96.7 0.02 4.3E-07 67.0 13.8 160 765-938 174-374 (388)
362 KOG0743 AAA+-type ATPase [Post 96.7 0.0045 9.7E-08 72.4 8.4 75 177-256 185-268 (457)
363 cd01131 PilT Pilus retraction 96.7 0.0029 6.3E-08 66.9 6.1 68 767-834 3-84 (198)
364 PRK13948 shikimate kinase; Pro 96.7 0.0031 6.6E-08 66.3 6.2 36 762-797 7-42 (182)
365 PF03266 NTPase_1: NTPase; In 96.7 0.0024 5.1E-08 66.3 5.2 23 767-789 1-23 (168)
366 cd00046 DEXDc DEAD-like helica 96.6 0.0053 1.2E-07 58.0 7.3 24 767-790 2-25 (144)
367 COG5271 MDN1 AAA ATPase contai 96.6 0.0071 1.5E-07 78.4 9.8 137 767-914 890-1048(4600)
368 cd01122 GP4d_helicase GP4d_hel 96.6 0.021 4.6E-07 62.7 12.8 37 762-798 27-67 (271)
369 PRK13695 putative NTPase; Prov 96.6 0.019 4.1E-07 59.1 11.6 23 767-789 2-24 (174)
370 PRK00625 shikimate kinase; Pro 96.6 0.0019 4.1E-08 67.3 4.2 31 767-797 2-32 (173)
371 PF09336 Vps4_C: Vps4 C termin 96.6 0.0014 3E-08 57.2 2.7 35 975-1011 28-62 (62)
372 cd00984 DnaB_C DnaB helicase C 96.6 0.023 5E-07 61.2 12.7 38 762-799 10-51 (242)
373 cd01128 rho_factor Transcripti 96.6 0.015 3.3E-07 64.1 11.3 28 764-791 15-42 (249)
374 COG3284 AcoR Transcriptional a 96.6 0.0093 2E-07 72.2 10.2 174 766-950 337-540 (606)
375 PF07693 KAP_NTPase: KAP famil 96.6 0.096 2.1E-06 58.8 17.9 29 763-791 18-46 (325)
376 TIGR02928 orc1/cdc6 family rep 96.6 0.012 2.6E-07 67.3 10.7 93 473-606 116-213 (365)
377 PRK14974 cell division protein 96.6 0.02 4.4E-07 65.7 12.5 36 764-799 139-177 (336)
378 KOG3347 Predicted nucleotide k 96.6 0.0018 3.9E-08 65.7 3.5 32 766-797 8-39 (176)
379 PRK00411 cdc6 cell division co 96.6 0.016 3.4E-07 67.2 11.7 111 473-623 125-239 (394)
380 PRK14532 adenylate kinase; Pro 96.6 0.0021 4.5E-08 66.8 4.1 35 767-803 2-36 (188)
381 TIGR00959 ffh signal recogniti 96.6 0.28 6E-06 58.3 22.1 73 764-836 98-194 (428)
382 PRK04328 hypothetical protein; 96.6 0.025 5.3E-07 62.2 12.6 39 759-798 18-59 (249)
383 PRK06645 DNA polymerase III su 96.5 0.033 7.2E-07 67.3 14.6 86 474-607 113-202 (507)
384 PF00437 T2SE: Type II/IV secr 96.5 0.0035 7.6E-08 69.0 5.9 98 726-835 100-208 (270)
385 cd03283 ABC_MutS-like MutS-lik 96.5 0.011 2.5E-07 62.7 9.5 69 766-835 26-116 (199)
386 TIGR01359 UMP_CMP_kin_fam UMP- 96.5 0.0022 4.7E-08 66.1 3.9 33 768-802 2-34 (183)
387 COG1485 Predicted ATPase [Gene 96.5 0.021 4.5E-07 65.3 11.9 29 763-791 63-91 (367)
388 PRK13949 shikimate kinase; Pro 96.5 0.0024 5.3E-08 66.0 3.9 31 767-797 3-33 (169)
389 TIGR02858 spore_III_AA stage I 96.4 0.0045 9.7E-08 69.0 6.1 68 766-833 112-203 (270)
390 PRK06762 hypothetical protein; 96.4 0.0071 1.5E-07 61.5 7.1 37 766-802 3-39 (166)
391 PRK14722 flhF flagellar biosyn 96.4 0.0074 1.6E-07 70.1 8.1 110 764-887 136-266 (374)
392 COG5245 DYN1 Dynein, heavy cha 96.4 0.0099 2.1E-07 76.6 9.5 142 763-915 1492-1660(3164)
393 PRK14531 adenylate kinase; Pro 96.4 0.003 6.5E-08 65.8 4.4 31 766-796 3-33 (183)
394 PRK04195 replication factor C 96.4 0.039 8.5E-07 66.3 14.4 62 180-257 12-73 (482)
395 PRK06217 hypothetical protein; 96.4 0.003 6.5E-08 65.7 4.3 31 767-797 3-33 (183)
396 COG4650 RtcR Sigma54-dependent 96.4 0.0048 1E-07 68.4 5.8 72 766-837 209-295 (531)
397 cd02020 CMPK Cytidine monophos 96.4 0.003 6.6E-08 62.1 3.9 30 768-797 2-31 (147)
398 COG1373 Predicted ATPase (AAA+ 96.4 0.032 6.9E-07 65.5 12.9 121 767-907 39-161 (398)
399 cd00544 CobU Adenosylcobinamid 96.4 0.03 6.5E-07 58.2 11.3 71 768-840 2-89 (169)
400 cd01428 ADK Adenylate kinase ( 96.3 0.0031 6.7E-08 65.3 3.9 33 768-802 2-34 (194)
401 TIGR03880 KaiC_arch_3 KaiC dom 96.3 0.041 8.9E-07 58.9 12.5 40 759-799 11-53 (224)
402 PTZ00202 tuzin; Provisional 96.3 0.093 2E-06 62.1 15.9 59 730-799 262-320 (550)
403 TIGR02533 type_II_gspE general 96.3 0.01 2.3E-07 71.2 8.6 96 725-835 217-322 (486)
404 TIGR03881 KaiC_arch_4 KaiC dom 96.3 0.045 9.7E-07 58.7 12.7 37 762-798 17-56 (229)
405 PRK14530 adenylate kinase; Pro 96.3 0.0041 8.8E-08 66.4 4.5 30 767-796 5-34 (215)
406 TIGR02525 plasmid_TraJ plasmid 96.3 0.0086 1.9E-07 69.6 7.4 69 767-835 151-236 (372)
407 PF04665 Pox_A32: Poxvirus A32 96.3 0.065 1.4E-06 58.9 13.7 134 762-912 10-169 (241)
408 PF00448 SRP54: SRP54-type pro 96.3 0.022 4.8E-07 60.5 9.9 109 765-885 1-132 (196)
409 cd02021 GntK Gluconate kinase 96.3 0.0037 8.1E-08 62.4 3.8 28 768-795 2-29 (150)
410 smart00487 DEXDc DEAD-like hel 96.3 0.044 9.4E-07 55.1 11.6 24 766-789 25-49 (201)
411 PRK08233 hypothetical protein; 96.3 0.03 6.4E-07 57.3 10.5 32 766-797 4-36 (182)
412 TIGR02688 conserved hypothetic 96.2 0.0097 2.1E-07 69.8 7.6 63 763-837 207-273 (449)
413 PRK05973 replicative DNA helic 96.2 0.041 8.9E-07 60.3 12.0 38 762-799 61-101 (237)
414 COG3854 SpoIIIAA ncharacterize 96.2 0.0097 2.1E-07 64.4 6.9 71 766-836 138-230 (308)
415 cd03281 ABC_MSH5_euk MutS5 hom 96.2 0.032 7E-07 59.9 10.8 22 766-787 30-51 (213)
416 COG0703 AroK Shikimate kinase 96.2 0.0038 8.2E-08 65.0 3.5 32 766-797 3-34 (172)
417 PRK10436 hypothetical protein; 96.2 0.012 2.6E-07 70.3 8.2 102 719-835 187-298 (462)
418 cd00227 CPT Chloramphenicol (C 96.2 0.0042 9.1E-08 64.1 3.8 34 766-799 3-36 (175)
419 PRK13764 ATPase; Provisional 96.2 0.0095 2.1E-07 73.0 7.3 70 765-835 257-335 (602)
420 TIGR02782 TrbB_P P-type conjug 96.2 0.011 2.5E-07 66.7 7.5 69 766-834 133-214 (299)
421 PRK03731 aroL shikimate kinase 96.1 0.0056 1.2E-07 62.5 4.4 32 766-797 3-34 (171)
422 PRK10416 signal recognition pa 96.1 0.093 2E-06 59.9 14.6 36 764-799 113-151 (318)
423 TIGR01313 therm_gnt_kin carboh 96.1 0.0042 9.1E-08 63.0 3.4 28 768-795 1-28 (163)
424 PRK11889 flhF flagellar biosyn 96.1 0.06 1.3E-06 63.1 13.0 35 765-799 241-278 (436)
425 PTZ00088 adenylate kinase 1; P 96.1 0.0057 1.2E-07 66.6 4.6 31 766-796 7-37 (229)
426 COG0563 Adk Adenylate kinase a 96.1 0.0054 1.2E-07 64.2 4.2 32 767-800 2-33 (178)
427 COG2804 PulE Type II secretory 96.1 0.012 2.6E-07 69.9 7.4 102 716-835 224-338 (500)
428 TIGR01420 pilT_fam pilus retra 96.1 0.0089 1.9E-07 68.7 6.3 69 766-834 123-205 (343)
429 KOG0479 DNA replication licens 96.1 0.016 3.4E-07 69.3 8.1 166 731-912 302-497 (818)
430 PRK06547 hypothetical protein; 96.0 0.0063 1.4E-07 63.3 4.4 34 764-797 14-47 (172)
431 TIGR01360 aden_kin_iso1 adenyl 96.0 0.0066 1.4E-07 62.4 4.5 30 766-795 4-33 (188)
432 TIGR02538 type_IV_pilB type IV 96.0 0.014 3E-07 71.5 8.0 95 726-835 292-396 (564)
433 PRK14528 adenylate kinase; Pro 96.0 0.006 1.3E-07 63.9 4.2 31 766-796 2-32 (186)
434 PRK13946 shikimate kinase; Pro 96.0 0.0058 1.2E-07 63.8 3.9 32 766-797 11-42 (184)
435 PF13481 AAA_25: AAA domain; P 96.0 0.023 4.9E-07 58.9 8.3 76 764-839 31-156 (193)
436 PRK08154 anaerobic benzoate ca 96.0 0.0098 2.1E-07 67.4 6.0 38 760-797 128-165 (309)
437 cd02027 APSK Adenosine 5'-phos 96.0 0.021 4.5E-07 57.8 7.6 34 768-801 2-38 (149)
438 COG1102 Cmk Cytidylate kinase 96.0 0.006 1.3E-07 62.8 3.6 28 768-795 3-30 (179)
439 COG1066 Sms Predicted ATP-depe 96.0 0.053 1.1E-06 63.2 11.5 101 759-860 88-206 (456)
440 PLN02200 adenylate kinase fami 95.9 0.0077 1.7E-07 65.7 4.6 39 763-803 41-79 (234)
441 PRK05057 aroK shikimate kinase 95.9 0.0074 1.6E-07 62.5 4.3 33 766-798 5-37 (172)
442 PRK04301 radA DNA repair and r 95.9 0.048 1E-06 61.9 11.1 41 759-800 97-146 (317)
443 PRK02496 adk adenylate kinase; 95.9 0.0069 1.5E-07 62.8 4.0 30 767-796 3-32 (184)
444 PF09848 DUF2075: Uncharacteri 95.9 0.014 3E-07 67.2 6.8 23 767-789 3-25 (352)
445 cd03280 ABC_MutS2 MutS2 homolo 95.9 0.055 1.2E-06 57.2 10.8 22 766-787 29-50 (200)
446 TIGR02236 recomb_radA DNA repa 95.9 0.056 1.2E-06 61.0 11.4 41 759-800 90-139 (310)
447 TIGR02655 circ_KaiC circadian 95.9 0.069 1.5E-06 64.2 12.8 79 759-838 258-367 (484)
448 PRK13900 type IV secretion sys 95.9 0.017 3.8E-07 66.1 7.4 71 765-835 160-246 (332)
449 TIGR00064 ftsY signal recognit 95.9 0.2 4.3E-06 56.0 15.5 37 763-799 70-109 (272)
450 TIGR01351 adk adenylate kinase 95.9 0.0069 1.5E-07 64.4 3.9 29 768-796 2-30 (210)
451 smart00534 MUTSac ATPase domai 95.9 0.066 1.4E-06 56.0 11.1 20 768-787 2-21 (185)
452 TIGR01650 PD_CobS cobaltochela 95.9 0.12 2.6E-06 59.2 13.8 35 221-257 64-98 (327)
453 PRK14730 coaE dephospho-CoA ki 95.8 0.026 5.7E-07 59.8 8.0 51 767-819 3-56 (195)
454 PF13479 AAA_24: AAA domain 95.8 0.035 7.6E-07 59.5 9.1 21 765-785 3-23 (213)
455 PRK09519 recA DNA recombinatio 95.8 0.048 1E-06 68.6 11.5 77 762-838 57-152 (790)
456 PF10443 RNA12: RNA12 protein; 95.8 0.54 1.2E-05 55.5 19.2 107 883-989 199-332 (431)
457 PRK00279 adk adenylate kinase; 95.8 0.0084 1.8E-07 64.0 4.2 30 767-796 2-31 (215)
458 PRK04040 adenylate kinase; Pro 95.8 0.0096 2.1E-07 62.8 4.4 31 765-795 2-34 (188)
459 cd03243 ABC_MutS_homologs The 95.8 0.077 1.7E-06 56.1 11.3 23 765-787 29-51 (202)
460 COG4088 Predicted nucleotide k 95.8 0.057 1.2E-06 57.9 9.9 23 768-790 4-26 (261)
461 TIGR03574 selen_PSTK L-seryl-t 95.7 0.025 5.4E-07 61.7 7.6 34 768-801 2-38 (249)
462 TIGR02238 recomb_DMC1 meiotic 95.7 0.056 1.2E-06 61.6 10.6 81 758-839 90-206 (313)
463 cd01125 repA Hexameric Replica 95.7 0.17 3.7E-06 54.9 14.0 21 768-788 4-24 (239)
464 PF13238 AAA_18: AAA domain; P 95.7 0.0081 1.8E-07 57.4 3.3 22 768-789 1-22 (129)
465 PRK14527 adenylate kinase; Pro 95.7 0.0089 1.9E-07 62.6 3.8 31 765-795 6-36 (191)
466 PLN03187 meiotic recombination 95.7 0.069 1.5E-06 61.6 11.2 80 759-839 121-236 (344)
467 cd01130 VirB11-like_ATPase Typ 95.7 0.018 4E-07 60.1 6.0 70 765-834 25-110 (186)
468 PRK06696 uridine kinase; Valid 95.7 0.023 5E-07 61.1 6.9 38 765-802 22-62 (223)
469 TIGR00767 rho transcription te 95.6 0.031 6.7E-07 65.4 8.2 27 764-790 167-193 (415)
470 TIGR01448 recD_rel helicase, p 95.6 0.028 6.1E-07 70.7 8.4 101 767-884 340-459 (720)
471 PRK13894 conjugal transfer ATP 95.6 0.02 4.3E-07 65.4 6.4 70 765-834 148-229 (319)
472 PRK09302 circadian clock prote 95.6 0.081 1.7E-06 63.9 12.0 77 762-838 28-144 (509)
473 cd00561 CobA_CobO_BtuR ATP:cor 95.6 0.18 4E-06 52.1 12.8 113 768-896 5-151 (159)
474 PF06414 Zeta_toxin: Zeta toxi 95.6 0.036 7.9E-07 58.5 7.9 67 763-829 13-98 (199)
475 TIGR00362 DnaA chromosomal rep 95.5 0.041 9E-07 64.4 9.0 98 485-623 199-298 (405)
476 PRK13833 conjugal transfer pro 95.5 0.031 6.8E-07 63.9 7.6 69 766-834 145-225 (323)
477 cd03115 SRP The signal recogni 95.5 0.049 1.1E-06 55.8 8.4 33 768-800 3-38 (173)
478 PRK04182 cytidylate kinase; Pr 95.5 0.012 2.7E-07 59.9 4.0 29 767-795 2-30 (180)
479 PF08433 KTI12: Chromatin asso 95.5 0.028 6.1E-07 62.7 7.0 69 768-837 4-83 (270)
480 PF00406 ADK: Adenylate kinase 95.5 0.012 2.6E-07 59.1 3.7 33 770-804 1-33 (151)
481 PF02562 PhoH: PhoH-like prote 95.5 0.035 7.6E-07 59.6 7.4 23 767-789 21-43 (205)
482 COG2909 MalT ATP-dependent tra 95.5 0.12 2.6E-06 64.8 12.8 154 764-936 36-228 (894)
483 PLN02199 shikimate kinase 95.5 0.022 4.8E-07 64.2 6.0 33 765-797 102-134 (303)
484 PF13521 AAA_28: AAA domain; P 95.5 0.013 2.7E-07 59.6 3.8 27 768-795 2-28 (163)
485 PRK09302 circadian clock prote 95.5 0.12 2.6E-06 62.5 12.7 77 762-838 270-377 (509)
486 COG0541 Ffh Signal recognition 95.5 2.9 6.2E-05 49.6 23.1 204 763-990 98-340 (451)
487 PRK00149 dnaA chromosomal repl 95.5 0.044 9.6E-07 65.2 8.9 98 485-623 211-310 (450)
488 PRK06581 DNA polymerase III su 95.4 0.16 3.4E-06 55.9 12.1 131 766-915 16-163 (263)
489 TIGR02239 recomb_RAD51 DNA rep 95.4 0.074 1.6E-06 60.7 10.1 39 762-800 93-140 (316)
490 PRK01184 hypothetical protein; 95.4 0.014 3E-07 60.5 3.8 29 767-796 3-31 (184)
491 PLN02674 adenylate kinase 95.4 0.015 3.4E-07 63.8 4.4 31 765-795 31-61 (244)
492 TIGR02173 cyt_kin_arch cytidyl 95.4 0.015 3.2E-07 58.9 3.9 30 767-796 2-31 (171)
493 cd03216 ABC_Carb_Monos_I This 95.4 0.062 1.4E-06 55.0 8.5 74 762-835 23-111 (163)
494 TIGR02655 circ_KaiC circadian 95.4 0.13 2.8E-06 62.0 12.4 79 758-837 15-133 (484)
495 COG1936 Predicted nucleotide k 95.4 0.011 2.5E-07 61.4 3.1 30 767-797 2-31 (180)
496 PF13245 AAA_19: Part of AAA d 95.4 0.026 5.5E-07 51.2 4.9 23 767-789 12-35 (76)
497 PLN03186 DNA repair protein RA 95.4 0.081 1.7E-06 61.0 10.2 114 762-877 120-270 (342)
498 PRK00889 adenylylsulfate kinas 95.4 0.063 1.4E-06 55.2 8.5 37 765-801 4-43 (175)
499 TIGR02788 VirB11 P-type DNA tr 95.4 0.019 4.2E-07 65.0 5.1 72 763-834 142-228 (308)
500 PRK12608 transcription termina 95.3 0.08 1.7E-06 61.6 9.8 25 766-790 134-158 (380)
No 1
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-76 Score=674.82 Aligned_cols=473 Identities=27% Similarity=0.410 Sum_probs=381.1
Q ss_pred HHHHHHHHHhhcCCeEEEEcCchhh-hhh-ccCCccHHHHHHHHHHHHhcCCCCEEEEecccCCCCCccccccccccccc
Q 001707 473 AMEALCEVLHSTQPLIVYFPDSSLW-LSR-AVPRCNRKEFVRKVEEMFDQLSGPVVLICGQNKNETGPKEKEKFTMILPN 550 (1023)
Q Consensus 473 ~i~~L~e~~~~~~p~Iiff~di~~~-~~~-s~~~~~~~~~~s~l~~~~~~~~g~v~vI~~~~~~d~~~~~~~~~~~~~~~ 550 (1023)
.|..||+.|+++.|.||||||||-+ ..| .-|+..-.+||+.|++.||.+.-.- + . +
T Consensus 270 kiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~-----~---~-g------------- 327 (802)
T KOG0733|consen 270 KIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEK-----T---K-G------------- 327 (802)
T ss_pred HHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccc-----c---C-C-------------
Confidence 6889999999999999999999997 333 3355566788999999888876110 0 0 0
Q ss_pred cccccCCCCcchhhhcccccCCCcchHHHHh--ccccEEEEcCCChHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhc
Q 001707 551 FGRLAKLPLPLQRLTEGLKATKRSDDNEIYN--LFTNVLSIHPPKEEDLLRTFNKQVEEDRRIVIYRSNLNELHKVLEDH 628 (1023)
Q Consensus 551 ~~~~~~~~~~~~~LvIGmTNR~d~iDeaL~r--rFe~~ieI~LPdee~Rl~Il~Iht~~~~~~~~~~~~v~~l~~~l~t~ 628 (1023)
-.+||||+|||||.+|+||+| |||++|.++.|++.+|.+||++..++++-.. +-++..|++ .|.
T Consensus 328 ----------~~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g--~~d~~qlA~--lTP 393 (802)
T KOG0733|consen 328 ----------DPVLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSG--DFDFKQLAK--LTP 393 (802)
T ss_pred ----------CCeEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCC--CcCHHHHHh--cCC
Confidence 015788999999999999999 9999999999999999999999976666444 455677777 899
Q ss_pred cCCcccccccccchhhhhhhhhhhhHhh---ccc-------cccc---ccCC----------C----------Ccc----
Q 001707 629 ELSCTDLLHVNTDGVILTKQRAEKVVGW---AKN-------HYLS---SCSF----------P----------SVK---- 671 (1023)
Q Consensus 629 ~~~gaDL~~Lc~~a~~ls~~~~~~~V~~---A~~-------~~l~---~~~~----------~----------~v~---- 671 (1023)
||.||||.+||++|+...+.++-..... ..+ .-+. ++++ + ..+
T Consensus 394 GfVGADL~AL~~~Aa~vAikR~ld~~~~p~~~~~~~ed~~~~~~~~d~S~i~~~~~~~~~~~ld~v~~~~i~~~~d~~S~ 473 (802)
T KOG0733|consen 394 GFVGADLMALCREAAFVAIKRILDQSSSPLTKVPISEDSSNKDAEEDQSSIKITSNAERPLELDRVVQDAILNNPDPLSK 473 (802)
T ss_pred CccchhHHHHHHHHHHHHHHHHhhcccCccccCCccccccCCCccchhhhhhcCCcccccccHHHHHHHHHHhCCCCcCh
Confidence 9999999999999987776654332210 000 0000 0000 0 000
Q ss_pred --CCceeeCHHHHHHHHHHhhhhhhccCCCcccccccchhhhhhhhcccccCCCCCCcccccccChHHHHHHHHHHHHcc
Q 001707 672 --GQRLHLPRESLEIAILRLKEQETASRKPTQNLKNLAKDEYESNFVSAVVPPGEIGVRFDDIGALEDVKKALNELVILP 749 (1023)
Q Consensus 672 --~~kv~V~~~df~~Al~~l~p~~~~~~~~~~~~~~~~~~efe~~~~~~ii~~~e~~vtfdDIgGle~vk~~L~e~V~~p 749 (1023)
...+.|+.+||..|+..++|+.. +.+++. -|+++|+||||+++++.+|..+|.+|
T Consensus 474 E~~~~L~i~~eDF~~Al~~iQPSak---------------------REGF~t--VPdVtW~dIGaL~~vR~eL~~aI~~P 530 (802)
T KOG0733|consen 474 ELLEGLSIKFEDFEEALSKIQPSAK---------------------REGFAT--VPDVTWDDIGALEEVRLELNMAILAP 530 (802)
T ss_pred HHhccceecHHHHHHHHHhcCcchh---------------------ccccee--cCCCChhhcccHHHHHHHHHHHHhhh
Confidence 12455666777777777666521 111211 25799999999999999999999999
Q ss_pred cCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccchhhhhhHHHHHHHHHHHHhhcCCeEEE
Q 001707 750 MRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTSKWFGDAEKLTKALFSFASKLAPVIIF 829 (1023)
Q Consensus 750 L~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~elg~~fi~vs~seL~s~~~ge~e~~I~~lF~~A~k~~PsIIf 829 (1023)
+++|++|...| +..|.|||||||||||||.||+|+|++.|++|+.|.+++|+++|+|++|..++++|..|+.++|||||
T Consensus 531 iK~pd~~k~lG-i~~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlNkYVGESErAVR~vFqRAR~saPCVIF 609 (802)
T KOG0733|consen 531 IKRPDLFKALG-IDAPSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLNKYVGESERAVRQVFQRARASAPCVIF 609 (802)
T ss_pred ccCHHHHHHhC-CCCCCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHHHHhhhHHHHHHHHHHHhhcCCCeEEE
Confidence 99999999999 56789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccchhhhhccCCCchhHHHHHHHHHHHhhhcCccCCCCceEEEEEecCCCCCCcHHHHh--hcCCceeecCCCHHHHHH
Q 001707 830 VDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPFDLDDAVIR--RLPRRIYVDLPDAENRMK 907 (1023)
Q Consensus 830 IDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlr--RFd~~I~V~lPd~eeR~~ 907 (1023)
+||||.|.+.|.... .....+++|+||+.|||+.. ...|.|||+||+|+.+|++++| ||++.++|++|+.++|..
T Consensus 610 FDEiDaL~p~R~~~~-s~~s~RvvNqLLtElDGl~~--R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ 686 (802)
T KOG0733|consen 610 FDEIDALVPRRSDEG-SSVSSRVVNQLLTELDGLEE--RRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVA 686 (802)
T ss_pred ecchhhcCcccCCCC-chhHHHHHHHHHHHhccccc--ccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHHHH
Confidence 999999999987654 77889999999999999954 5679999999999999999999 999999999999999999
Q ss_pred HHHHHHh--ccccCCccCHHHHHHHcc--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC-CCCCCcCCCCHHHH
Q 001707 908 ILRIFLA--HESLESGFQFNELANATE--GYSGSDLKNLCIAAAYRPVQELLEEERKLFIQRGKN-DAAPVLRPLKLEDF 982 (1023)
Q Consensus 908 ILk~~L~--~~~l~~dvdl~~LA~~Te--GySgaDL~~L~~~Aa~~Airr~l~~e~~~~~~~~~~-~~~~~~r~Lt~eDF 982 (1023)
||+.+++ +.++.+++|+++||..+. ||||+||..||++|.+.|+++.+..... .... ........+|+.||
T Consensus 687 ILK~~tkn~k~pl~~dVdl~eia~~~~c~gftGADLaaLvreAsi~AL~~~~~~~~~----~~~~~~~~~~~~~~t~~hF 762 (802)
T KOG0733|consen 687 ILKTITKNTKPPLSSDVDLDEIARNTKCEGFTGADLAALVREASILALRESLFEIDS----SEDDVTVRSSTIIVTYKHF 762 (802)
T ss_pred HHHHHhccCCCCCCcccCHHHHhhcccccCCchhhHHHHHHHHHHHHHHHHHhhccc----cCcccceeeeeeeecHHHH
Confidence 9999999 777889999999999877 9999999999999999999987653211 0000 00111346899999
Q ss_pred HHHHHhhCCCcccchhhHHHHHHHHHHhCCCC
Q 001707 983 IQSKAKVGPSVAYDAASMNELRKWNEQYGEGG 1014 (1023)
Q Consensus 983 ~~Al~kv~PSvs~d~~~m~el~kW~d~yG~~g 1014 (1023)
.+|+++++||++..+. ..|...+..||+--
T Consensus 763 ~eA~~~i~pSv~~~dr--~~Yd~l~k~~~L~~ 792 (802)
T KOG0733|consen 763 EEAFQRIRPSVSERDR--KKYDRLNKSRSLST 792 (802)
T ss_pred HHHHHhcCCCccHHHH--HHHHHHhhhhcccc
Confidence 9999999999987653 34667777777543
No 2
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.9e-70 Score=631.25 Aligned_cols=411 Identities=31% Similarity=0.524 Sum_probs=362.4
Q ss_pred HHHHHHHHHhhcC-CeEEEEcCchhhh-hhccCCccHHHHHHHHHHHHhcCC--CCEEEEecccCCCCCccccccccccc
Q 001707 473 AMEALCEVLHSTQ-PLIVYFPDSSLWL-SRAVPRCNRKEFVRKVEEMFDQLS--GPVVLICGQNKNETGPKEKEKFTMIL 548 (1023)
Q Consensus 473 ~i~~L~e~~~~~~-p~Iiff~di~~~~-~~s~~~~~~~~~~s~l~~~~~~~~--g~v~vI~~~~~~d~~~~~~~~~~~~~ 548 (1023)
.+-..||++.+++ |+|||+||+|.+. .+.+-...-.++++.|.++||+|. ++||||
T Consensus 265 ~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~~e~Rv~sqlltL~dg~~~~~~vivl-------------------- 324 (693)
T KOG0730|consen 265 NLRKAFAEALKFQVPSIIFIDELDALCPKREGADDVESRVVSQLLTLLDGLKPDAKVIVL-------------------- 324 (693)
T ss_pred HHHHHHHHHhccCCCeeEeHHhHhhhCCcccccchHHHHHHHHHHHHHhhCcCcCcEEEE--------------------
Confidence 4566799999999 9999999999984 443333334689999999999999 778887
Q ss_pred cccccccCCCCcchhhhcccccCCCcchHHHHh-ccccEEEEcCCChHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHhh
Q 001707 549 PNFGRLAKLPLPLQRLTEGLKATKRSDDNEIYN-LFTNVLSIHPPKEEDLLRTFNKQVEEDRRIVIYRSNLNELHKVLED 627 (1023)
Q Consensus 549 ~~~~~~~~~~~~~~~LvIGmTNR~d~iDeaL~r-rFe~~ieI~LPdee~Rl~Il~Iht~~~~~~~~~~~~v~~l~~~l~t 627 (1023)
++||||+.||++|+| |||++++|+.|+..+|++|+.+|+++|.-. .+.++..+ +-.+
T Consensus 325 ------------------~atnrp~sld~alRRgRfd~ev~IgiP~~~~RldIl~~l~k~~~~~--~~~~l~~i--A~~t 382 (693)
T KOG0730|consen 325 ------------------AATNRPDSLDPALRRGRFDREVEIGIPGSDGRLDILRVLTKKMNLL--SDVDLEDI--AVST 382 (693)
T ss_pred ------------------EecCCccccChhhhcCCCcceeeecCCCchhHHHHHHHHHHhcCCc--chhhHHHH--HHHc
Confidence 778899999999999 999999999999999999999998776643 33444444 4499
Q ss_pred ccCCcccccccccchhhhhhhhhhhhHhhcccccccccCCCCccCCceeeCHHHHHHHHHHhhhhhhccCCCcccccccc
Q 001707 628 HELSCTDLLHVNTDGVILTKQRAEKVVGWAKNHYLSSCSFPSVKGQRLHLPRESLEIAILRLKEQETASRKPTQNLKNLA 707 (1023)
Q Consensus 628 ~~~~gaDL~~Lc~~a~~ls~~~~~~~V~~A~~~~l~~~~~~~v~~~kv~V~~~df~~Al~~l~p~~~~~~~~~~~~~~~~ 707 (1023)
+||.||||.+||.+++.-...+ ++++|..|+..+.|+..+
T Consensus 383 hGyvGaDL~~l~~ea~~~~~r~----------------------------~~~~~~~A~~~i~psa~R------------ 422 (693)
T KOG0730|consen 383 HGYVGADLAALCREASLQATRR----------------------------TLEIFQEALMGIRPSALR------------ 422 (693)
T ss_pred cchhHHHHHHHHHHHHHHHhhh----------------------------hHHHHHHHHhcCCchhhh------------
Confidence 9999999999998876633111 667888888888776211
Q ss_pred hhhhhhhhcccccCCCCCCcccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHH
Q 001707 708 KDEYESNFVSAVVPPGEIGVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALAT 787 (1023)
Q Consensus 708 ~~efe~~~~~~ii~~~e~~vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~ 787 (1023)
..+ ..-++++|+||||++++|.+|++.|++|+.+|+.|.+.| +.|++|||||||||||||++|+|+|+
T Consensus 423 ---------e~~--ve~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~G-i~ppkGVLlyGPPGC~KT~lAkalAn 490 (693)
T KOG0730|consen 423 ---------EIL--VEMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFG-ISPPKGVLLYGPPGCGKTLLAKALAN 490 (693)
T ss_pred ---------hee--ccCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhc-CCCCceEEEECCCCcchHHHHHHHhh
Confidence 111 233679999999999999999999999999999999999 78999999999999999999999999
Q ss_pred HhCCcEEEEeccccchhhhhhHHHHHHHHHHHHhhcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhcCccCCC
Q 001707 788 EAGANFISITGSTLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKE 867 (1023)
Q Consensus 788 elg~~fi~vs~seL~s~~~ge~e~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~~ 867 (1023)
+++++|+.+.+++++++|+|++|+.++.+|..|+..+|||||+||||.+...|++.. ..+..+++++||++|||+..
T Consensus 491 e~~~nFlsvkgpEL~sk~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~-~~v~~RVlsqLLtEmDG~e~-- 567 (693)
T KOG0730|consen 491 EAGMNFLSVKGPELFSKYVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSS-SGVTDRVLSQLLTEMDGLEA-- 567 (693)
T ss_pred hhcCCeeeccCHHHHHHhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCc-cchHHHHHHHHHHHcccccc--
Confidence 999999999999999999999999999999999999999999999999999997543 48899999999999999954
Q ss_pred CceEEEEEecCCCCCCcHHHHh--hcCCceeecCCCHHHHHHHHHHHHhccccCCccCHHHHHHHccCCcHHHHHHHHHH
Q 001707 868 SQKILILGATNRPFDLDDAVIR--RLPRRIYVDLPDAENRMKILRIFLAHESLESGFQFNELANATEGYSGSDLKNLCIA 945 (1023)
Q Consensus 868 ~~~VlVIaTTN~p~~Ld~aLlr--RFd~~I~V~lPd~eeR~~ILk~~L~~~~l~~dvdl~~LA~~TeGySgaDL~~L~~~ 945 (1023)
..+|+|||+||+|+.||++++| ||++.|+|++||.+.|.+||+.++++.++.+++|+.+||+.|+||||+||.++|++
T Consensus 568 ~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La~~T~g~SGAel~~lCq~ 647 (693)
T KOG0730|consen 568 LKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELAQATEGYSGAEIVAVCQE 647 (693)
T ss_pred cCcEEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccHHHHHHHhccCChHHHHHHHHH
Confidence 4589999999999999999999 99999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCCCCCCcCCCCHHHHHHHHHhhCCCcccch
Q 001707 946 AAYRPVQELLEEERKLFIQRGKNDAAPVLRPLKLEDFIQSKAKVGPSVAYDA 997 (1023)
Q Consensus 946 Aa~~Airr~l~~e~~~~~~~~~~~~~~~~r~Lt~eDF~~Al~kv~PSvs~d~ 997 (1023)
|+..|+++.++ ...|+.+||.+|++.++++++...
T Consensus 648 A~~~a~~e~i~-----------------a~~i~~~hf~~al~~~r~s~~~~~ 682 (693)
T KOG0730|consen 648 AALLALRESIE-----------------ATEITWQHFEEALKAVRPSLTSEL 682 (693)
T ss_pred HHHHHHHHhcc-----------------cccccHHHHHHHHHhhcccCCHHH
Confidence 99999998654 135899999999999999998653
No 3
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=8.8e-60 Score=578.04 Aligned_cols=465 Identities=29% Similarity=0.489 Sum_probs=372.0
Q ss_pred HHHHHHHHHhhcCCeEEEEcCchhhhhhcc--CCccHHHHHHHHHHHHhcCCC--CEEEEecccCCCCCccccccccccc
Q 001707 473 AMEALCEVLHSTQPLIVYFPDSSLWLSRAV--PRCNRKEFVRKVEEMFDQLSG--PVVLICGQNKNETGPKEKEKFTMIL 548 (1023)
Q Consensus 473 ~i~~L~e~~~~~~p~Iiff~di~~~~~~s~--~~~~~~~~~s~l~~~~~~~~g--~v~vI~~~~~~d~~~~~~~~~~~~~ 548 (1023)
.+..+|+.+...+|.||||||||.+..... ......++++.|+.+|+++.. +|+|
T Consensus 259 ~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~viv--------------------- 317 (733)
T TIGR01243 259 RLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIV--------------------- 317 (733)
T ss_pred HHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEEE---------------------
Confidence 467789999999999999999999754321 122335678888888887763 3444
Q ss_pred cccccccCCCCcchhhhcccccCCCcchHHHHh--ccccEEEEcCCChHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHh
Q 001707 549 PNFGRLAKLPLPLQRLTEGLKATKRSDDNEIYN--LFTNVLSIHPPKEEDLLRTFNKQVEEDRRIVIYRSNLNELHKVLE 626 (1023)
Q Consensus 549 ~~~~~~~~~~~~~~~LvIGmTNR~d~iDeaL~r--rFe~~ieI~LPdee~Rl~Il~Iht~~~~~~~~~~~~v~~l~~~l~ 626 (1023)
||+||+++.||++|+| ||+.+++|++|+.++|.+||++|+..+. ...+.+++.++. .
T Consensus 318 -----------------I~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~--l~~d~~l~~la~--~ 376 (733)
T TIGR01243 318 -----------------IGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMP--LAEDVDLDKLAE--V 376 (733)
T ss_pred -----------------EeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCC--CccccCHHHHHH--h
Confidence 5888888999999998 9999999999999999999999965432 112445677766 7
Q ss_pred hccCCcccccccccchhhhhhhhhhhhHhhcccccccccCCCCccCCceeeCHHHHHHHHHHhhhhhhccCCCccccccc
Q 001707 627 DHELSCTDLLHVNTDGVILTKQRAEKVVGWAKNHYLSSCSFPSVKGQRLHLPRESLEIAILRLKEQETASRKPTQNLKNL 706 (1023)
Q Consensus 627 t~~~~gaDL~~Lc~~a~~ls~~~~~~~V~~A~~~~l~~~~~~~v~~~kv~V~~~df~~Al~~l~p~~~~~~~~~~~~~~~ 706 (1023)
+.||.|+||..||.+++.....+. +... ...+.....+..-.....++.+||+.|+..+.|+...
T Consensus 377 t~G~~gadl~~l~~~a~~~al~r~---~~~~-~~~~~~~~i~~~~~~~~~v~~~df~~Al~~v~ps~~~----------- 441 (733)
T TIGR01243 377 THGFVGADLAALAKEAAMAALRRF---IREG-KINFEAEEIPAEVLKELKVTMKDFMEALKMVEPSAIR----------- 441 (733)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHH---hhcc-ccccccccccchhcccccccHHHHHHHHhhccccccc-----------
Confidence 899999999999987765443321 1100 0000000001001234578999999999888775210
Q ss_pred chhhhhhhhcccccCCCCCCcccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHH
Q 001707 707 AKDEYESNFVSAVVPPGEIGVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALA 786 (1023)
Q Consensus 707 ~~~efe~~~~~~ii~~~e~~vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA 786 (1023)
+. .+ ..+.++|+||+|++.+++.|++.+.+|+.+++.|.+.+ ..++++||||||||||||++|+++|
T Consensus 442 --~~--------~~--~~~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g-~~~~~giLL~GppGtGKT~lakalA 508 (733)
T TIGR01243 442 --EV--------LV--EVPNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMG-IRPPKGVLLFGPPGTGKTLLAKAVA 508 (733)
T ss_pred --hh--------hc--cccccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcC-CCCCceEEEECCCCCCHHHHHHHHH
Confidence 00 00 12457999999999999999999999999999999988 5788999999999999999999999
Q ss_pred HHhCCcEEEEeccccchhhhhhHHHHHHHHHHHHhhcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhcCccCC
Q 001707 787 TEAGANFISITGSTLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSK 866 (1023)
Q Consensus 787 ~elg~~fi~vs~seL~s~~~ge~e~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~ 866 (1023)
++++++|+.++++++.++|+|++++.++.+|..|+..+|+||||||||.+++.++.........+++++|+..|+++..
T Consensus 509 ~e~~~~fi~v~~~~l~~~~vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~- 587 (733)
T TIGR01243 509 TESGANFIAVRGPEILSKWVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQE- 587 (733)
T ss_pred HhcCCCEEEEehHHHhhcccCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccC-
Confidence 9999999999999999999999999999999999999999999999999998887655566778999999999999854
Q ss_pred CCceEEEEEecCCCCCCcHHHHh--hcCCceeecCCCHHHHHHHHHHHHhccccCCccCHHHHHHHccCCcHHHHHHHHH
Q 001707 867 ESQKILILGATNRPFDLDDAVIR--RLPRRIYVDLPDAENRMKILRIFLAHESLESGFQFNELANATEGYSGSDLKNLCI 944 (1023)
Q Consensus 867 ~~~~VlVIaTTN~p~~Ld~aLlr--RFd~~I~V~lPd~eeR~~ILk~~L~~~~l~~dvdl~~LA~~TeGySgaDL~~L~~ 944 (1023)
..+++||+|||+|+.||++++| ||++.|+|++|+.++|.+||+.++.+.++..++++..||..|+||||+||.++|+
T Consensus 588 -~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~~~~ 666 (733)
T TIGR01243 588 -LSNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVDLEELAEMTEGYTGADIEAVCR 666 (733)
T ss_pred -CCCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHcCCCCHHHHHHHHH
Confidence 4579999999999999999998 9999999999999999999999999888888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCCCCCCcCCCCHHHHHHHHHhhCCCcccchhhHHHHHHHHHHhCC
Q 001707 945 AAAYRPVQELLEEERKLFIQRGKNDAAPVLRPLKLEDFIQSKAKVGPSVAYDAASMNELRKWNEQYGE 1012 (1023)
Q Consensus 945 ~Aa~~Airr~l~~e~~~~~~~~~~~~~~~~r~Lt~eDF~~Al~kv~PSvs~d~~~m~el~kW~d~yG~ 1012 (1023)
+|++.|+++.+............ .......+|+++||..|+++++||++.+. +..+.+|...||.
T Consensus 667 ~A~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~f~~al~~~~ps~~~~~--~~~~~~~~~~~~~ 731 (733)
T TIGR01243 667 EAAMAALRESIGSPAKEKLEVGE-EEFLKDLKVEMRHFLEALKKVKPSVSKED--MLRYERLAKELKR 731 (733)
T ss_pred HHHHHHHHHHhhhccchhhhccc-ccccccCcccHHHHHHHHHHcCCCCCHHH--HHHHHHHHHHhcc
Confidence 99999999876532211000000 00112347999999999999999998764 6779999999974
No 4
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.2e-58 Score=507.11 Aligned_cols=372 Identities=58% Similarity=0.898 Sum_probs=338.4
Q ss_pred cccchhhhhhhhhhhhHhhcccccccccCCCCccCCceeeCHHHHHHHHHHhhhhhhccCCCccccc--ccchhhhhhhh
Q 001707 638 VNTDGVILTKQRAEKVVGWAKNHYLSSCSFPSVKGQRLHLPRESLEIAILRLKEQETASRKPTQNLK--NLAKDEYESNF 715 (1023)
Q Consensus 638 Lc~~a~~ls~~~~~~~V~~A~~~~l~~~~~~~v~~~kv~V~~~df~~Al~~l~p~~~~~~~~~~~~~--~~~~~efe~~~ 715 (1023)
.|+....+..+.++.++++|++||+.++..+.+++ +.++.++++.++...++..... .+++ .+..++|+..+
T Consensus 4 ~~~~~~~~i~~~~~~i~~~A~~~~~~~~~~~~~d~-~~~~~~eS~~~~~~~l~~~~~~-----~s~k~~~i~~ne~E~~i 77 (386)
T KOG0737|consen 4 SFTKDDVLITSLIRKIVAAAISHHLVHLLVPRLDP-NLKASRESLEKTEELLKNLEAE-----LSLKYRIIQKNEYEKRI 77 (386)
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHhccccccCh-hhhhhHHHHHHHHHHHHhhhhc-----cchhhhhhhhhHHHHHh
Confidence 45655555568889999999999999999998888 8889999999998777765332 2222 46789999999
Q ss_pred cccccCCCCCCcccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 001707 716 VSAVVPPGEIGVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFIS 795 (1023)
Q Consensus 716 ~~~ii~~~e~~vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~elg~~fi~ 795 (1023)
.+.+++|.++.++|+||||++.++++|++.|.+|+++|++|..+++.+|++|||||||||||||+||+|+|+++|++|+.
T Consensus 78 ~s~~v~p~~I~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fIn 157 (386)
T KOG0737|consen 78 ASDVVPPSEIGVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFIN 157 (386)
T ss_pred hhcccchhhceeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeccccchhhhhhHHHHHHHHHHHHhhcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhcCccCCCCceEEEEE
Q 001707 796 ITGSTLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILG 875 (1023)
Q Consensus 796 vs~seL~s~~~ge~e~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~~~~~VlVIa 875 (1023)
|.++.++++|+|+.++.++.+|..|.+.+|+||||||+|.+++.| +..++++...+.++||.+|||+.++.+.+|+|+|
T Consensus 158 v~~s~lt~KWfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R-~s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlg 236 (386)
T KOG0737|consen 158 VSVSNLTSKWFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQR-RSTDHEATAMMKNEFMALWDGLSSKDSERVLVLG 236 (386)
T ss_pred eeccccchhhHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhc-ccchHHHHHHHHHHHHHHhccccCCCCceEEEEe
Confidence 999999999999999999999999999999999999999999999 6778999999999999999999999888999999
Q ss_pred ecCCCCCCcHHHHhhcCCceeecCCCHHHHHHHHHHHHhccccCCccCHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHH
Q 001707 876 ATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLESGFQFNELANATEGYSGSDLKNLCIAAAYRPVQELL 955 (1023)
Q Consensus 876 TTN~p~~Ld~aLlrRFd~~I~V~lPd~eeR~~ILk~~L~~~~l~~dvdl~~LA~~TeGySgaDL~~L~~~Aa~~Airr~l 955 (1023)
|||+|.+||++++||++++++|++|+..+|.+||+.+++.+.+.+++|+.++|.+|+||||+||+++|..|++.++++++
T Consensus 237 ATNRP~DlDeAiiRR~p~rf~V~lP~~~qR~kILkviLk~e~~e~~vD~~~iA~~t~GySGSDLkelC~~Aa~~~ire~~ 316 (386)
T KOG0737|consen 237 ATNRPFDLDEAIIRRLPRRFHVGLPDAEQRRKILKVILKKEKLEDDVDLDEIAQMTEGYSGSDLKELCRLAALRPIRELL 316 (386)
T ss_pred CCCCCccHHHHHHHhCcceeeeCCCchhhHHHHHHHHhcccccCcccCHHHHHHhcCCCcHHHHHHHHHHHhHhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHH-----HHHHHhhCCC----CCCCCcCCCCHHHHHHHHHhhCCCcccchhhHHHHHHHHHHhCCCCCC
Q 001707 956 EEE-----RKLFIQRGKN----DAAPVLRPLKLEDFIQSKAKVGPSVAYDAASMNELRKWNEQYGEGGSR 1016 (1023)
Q Consensus 956 ~~e-----~~~~~~~~~~----~~~~~~r~Lt~eDF~~Al~kv~PSvs~d~~~m~el~kW~d~yG~~g~r 1016 (1023)
..+ .+........ ......|+++++||.+|+.++.+++..+...|+..++|++.||+||+|
T Consensus 317 ~~~~~~~d~d~~~~d~~~~~~~~~~~~~r~l~~eDf~~a~~~v~~~~~~~~t~~~a~~~~~~~~~e~~sr 386 (386)
T KOG0737|consen 317 VSETGLLDLDKAIADLKPTQAAASSCLLRPLEQEDFPKAINRVSASVAMDATRMNALKQWNELYGEGGSR 386 (386)
T ss_pred HhcccchhhhhhhhhccCCcccccccccCcccHHHHHHHHHhhhhHHHHhhhhhHHHHHHHhhhccccCC
Confidence 875 2111111010 011237999999999999999999999999999999999999999997
No 5
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.1e-55 Score=509.27 Aligned_cols=457 Identities=26% Similarity=0.434 Sum_probs=360.3
Q ss_pred HHHHHHHHHhhcCCeEEEEcCchhhhhhccCCccHHHHHHHHHHHHhcCCCCEEEEecccCCCCCccccccccccccccc
Q 001707 473 AMEALCEVLHSTQPLIVYFPDSSLWLSRAVPRCNRKEFVRKVEEMFDQLSGPVVLICGQNKNETGPKEKEKFTMILPNFG 552 (1023)
Q Consensus 473 ~i~~L~e~~~~~~p~Iiff~di~~~~~~s~~~~~~~~~~s~l~~~~~~~~g~v~vI~~~~~~d~~~~~~~~~~~~~~~~~ 552 (1023)
.+++.|+-|+..+|.||||...|-+-..+.+. .-.++.+.+..+|.. +..
T Consensus 478 kl~~~f~~a~~~~pavifl~~~dvl~id~dgg-ed~rl~~~i~~~ls~-----------------e~~------------ 527 (953)
T KOG0736|consen 478 KLQAIFSRARRCSPAVLFLRNLDVLGIDQDGG-EDARLLKVIRHLLSN-----------------EDF------------ 527 (953)
T ss_pred HHHHHHHHHhhcCceEEEEeccceeeecCCCc-hhHHHHHHHHHHHhc-----------------ccc------------
Confidence 45677888889999999999999875444332 223556656655550 010
Q ss_pred cccCCCCcc-hhhhcccccCCCcchHHHHhccccEEEEcCCChHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhccCC
Q 001707 553 RLAKLPLPL-QRLTEGLKATKRSDDNEIYNLFTNVLSIHPPKEEDLLRTFNKQVEEDRRIVIYRSNLNELHKVLEDHELS 631 (1023)
Q Consensus 553 ~~~~~~~~~-~~LvIGmTNR~d~iDeaL~rrFe~~ieI~LPdee~Rl~Il~Iht~~~~~~~~~~~~v~~l~~~l~t~~~~ 631 (1023)
+.+. ..++||.|++.+.|-..+++.|-.+|+++-|+++.|++||++.+.. ...+.+++.-..+.++.||+
T Consensus 528 -----~~~~~~~ivv~t~~s~~~lp~~i~~~f~~ei~~~~lse~qRl~iLq~y~~~----~~~n~~v~~k~~a~~t~gfs 598 (953)
T KOG0736|consen 528 -----KFSCPPVIVVATTSSIEDLPADIQSLFLHEIEVPALSEEQRLEILQWYLNH----LPLNQDVNLKQLARKTSGFS 598 (953)
T ss_pred -----cCCCCceEEEEeccccccCCHHHHHhhhhhccCCCCCHHHHHHHHHHHHhc----cccchHHHHHHHHHhcCCCC
Confidence 1111 1345566666677778889999999999999999999999997533 22444444444455999999
Q ss_pred cccccccccchhhhhhhhhhhhHhhcccccccccCCCCccCCceeeCHHHHHHHHHHhhhhhhccCCCcccccccchhhh
Q 001707 632 CTDLLHVNTDGVILTKQRAEKVVGWAKNHYLSSCSFPSVKGQRLHLPRESLEIAILRLKEQETASRKPTQNLKNLAKDEY 711 (1023)
Q Consensus 632 gaDL~~Lc~~a~~ls~~~~~~~V~~A~~~~l~~~~~~~v~~~kv~V~~~df~~Al~~l~p~~~~~~~~~~~~~~~~~~ef 711 (1023)
-.||++|..........+++.-- +-..+.....-.+...-..++.+||..|+.+++..
T Consensus 599 ~~~L~~l~~~~s~~~~~~i~~~~---l~g~~~~~~~~~~~~~~~~l~~edf~kals~~~~~------------------- 656 (953)
T KOG0736|consen 599 FGDLEALVAHSSLAAKTRIKNKG---LAGGLQEEDEGELCAAGFLLTEEDFDKALSRLQKE------------------- 656 (953)
T ss_pred HHHHHHHhcCchHHHHHHHHhhc---ccccchhccccccccccceecHHHHHHHHHHHHHh-------------------
Confidence 99999998766433333332211 11111111111222334678999999999988753
Q ss_pred hhhhcccccCCCCCCcccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC
Q 001707 712 ESNFVSAVVPPGEIGVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGA 791 (1023)
Q Consensus 712 e~~~~~~ii~~~e~~vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~elg~ 791 (1023)
+...|-.|.-|+|+|+||||++++|+++.+.|.+||++|++|..+ .++..|||||||||||||.||+|+|.++..
T Consensus 657 ---fs~aiGAPKIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfssg--lrkRSGILLYGPPGTGKTLlAKAVATEcsL 731 (953)
T KOG0736|consen 657 ---FSDAIGAPKIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSSG--LRKRSGILLYGPPGTGKTLLAKAVATECSL 731 (953)
T ss_pred ---hhhhcCCCCCCccchhcccCHHHHHHHHHHHhcCcccChhhhhcc--ccccceeEEECCCCCchHHHHHHHHhhcee
Confidence 123344556688999999999999999999999999999999865 567789999999999999999999999999
Q ss_pred cEEEEeccccchhhhhhHHHHHHHHHHHHhhcCCeEEEeccchhhhhccCCCch-hHHHHHHHHHHHhhhcCccCCCCce
Q 001707 792 NFISITGSTLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFE-HEATRRMRNEFMSAWDGLRSKESQK 870 (1023)
Q Consensus 792 ~fi~vs~seL~s~~~ge~e~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~-~e~~~ril~~LL~~Ldgl~~~~~~~ 870 (1023)
+|+.|.+++|+++|+|++|++++.+|+.|+..+|||||+||+|++++.|+.+++ ..++.|++.+||.+|||+.......
T Consensus 732 ~FlSVKGPELLNMYVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~s~~ 811 (953)
T KOG0736|consen 732 NFLSVKGPELLNMYVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSSSQD 811 (953)
T ss_pred eEEeecCHHHHHHHhcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCCCCCc
Confidence 999999999999999999999999999999999999999999999999987654 5689999999999999998766789
Q ss_pred EEEEEecCCCCCCcHHHHh--hcCCceeecCC-CHHHHHHHHHHHHhccccCCccCHHHHHHHcc-CCcHHHHHHHHHHH
Q 001707 871 ILILGATNRPFDLDDAVIR--RLPRRIYVDLP-DAENRMKILRIFLAHESLESGFQFNELANATE-GYSGSDLKNLCIAA 946 (1023)
Q Consensus 871 VlVIaTTN~p~~Ld~aLlr--RFd~~I~V~lP-d~eeR~~ILk~~L~~~~l~~dvdl~~LA~~Te-GySgaDL~~L~~~A 946 (1023)
|+||||||+|+.||++|+| |||+.+++.++ +.+.+..+|+.+.++..++.++|+.++|+.+. .|||+|+..+|..|
T Consensus 812 VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLdedVdL~eiAk~cp~~~TGADlYsLCSdA 891 (953)
T KOG0736|consen 812 VFVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDEDVDLVEIAKKCPPNMTGADLYSLCSDA 891 (953)
T ss_pred eEEEecCCCccccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCCCCcCHHHHHhhCCcCCchhHHHHHHHHH
Confidence 9999999999999999999 99999999987 56779999999999999999999999999986 79999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCCCCCCcCCCCHHHHHHHHHhhCCCcccch
Q 001707 947 AYRPVQELLEEERKLFIQRGKNDAAPVLRPLKLEDFIQSKAKVGPSVAYDA 997 (1023)
Q Consensus 947 a~~Airr~l~~e~~~~~~~~~~~~~~~~r~Lt~eDF~~Al~kv~PSvs~d~ 997 (1023)
.+.|++|.+..-.....+ . ....+....|+|+||.+|.++.+||++..+
T Consensus 892 ~l~AikR~i~~ie~g~~~-~-~e~~~~~v~V~~eDflks~~~l~PSvS~~E 940 (953)
T KOG0736|consen 892 MLAAIKRTIHDIESGTIS-E-EEQESSSVRVTMEDFLKSAKRLQPSVSEQE 940 (953)
T ss_pred HHHHHHHHHHHhhhcccc-c-cccCCceEEEEHHHHHHHHHhcCCcccHHH
Confidence 999999976543221100 0 112233346999999999999999999765
No 6
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.6e-52 Score=469.87 Aligned_cols=347 Identities=18% Similarity=0.219 Sum_probs=283.4
Q ss_pred eEEEEcCchhhhhh--cc--CCccHHHHHHHHHHHHhcCCCCEEEEecccCCCCCccccccccccccccccccCCCCcch
Q 001707 487 LIVYFPDSSLWLSR--AV--PRCNRKEFVRKVEEMFDQLSGPVVLICGQNKNETGPKEKEKFTMILPNFGRLAKLPLPLQ 562 (1023)
Q Consensus 487 ~Iiff~di~~~~~~--s~--~~~~~~~~~s~l~~~~~~~~g~v~vI~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 562 (1023)
-||.|||||-++.+ |. .-..|...|+.|++.||+.+ ++ -+
T Consensus 326 HIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVe---qL---------------------------------NN 369 (744)
T KOG0741|consen 326 HIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVE---QL---------------------------------NN 369 (744)
T ss_pred eEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHH---hh---------------------------------hc
Confidence 48999999998654 22 35678899998888776655 11 13
Q ss_pred hhhcccccCCCcchHHHHh--ccccEEEEcCCChHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhccCCccccccccc
Q 001707 563 RLTEGLKATKRSDDNEIYN--LFTNVLSIHPPKEEDLLRTFNKQVEEDRRIVIYRSNLNELHKVLEDHELSCTDLLHVNT 640 (1023)
Q Consensus 563 ~LvIGmTNR~d~iDeaL~r--rFe~~ieI~LPdee~Rl~Il~Iht~~~~~~~~~~~~v~~l~~~l~t~~~~gaDL~~Lc~ 640 (1023)
+||||||||+|||||||+| |||+|+||+||||+||+|||+|||++|+++..+++|++.-+.+..||||+||||++|
T Consensus 370 ILVIGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfSGAElegl-- 447 (744)
T KOG0741|consen 370 ILVIGMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKNFSGAELEGL-- 447 (744)
T ss_pred EEEEeccCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCchhHHHHH--
Confidence 6778999999999999999 999999999999999999999999999999999988776666679999999999998
Q ss_pred chhhhhhhhhhhhHhhcccccccccCCCCc---cCCceeeCHHHHHHHHHHhhhhhhccCCCcccccccchhhhhhhhcc
Q 001707 641 DGVILTKQRAEKVVGWAKNHYLSSCSFPSV---KGQRLHLPRESLEIAILRLKEQETASRKPTQNLKNLAKDEYESNFVS 717 (1023)
Q Consensus 641 ~a~~ls~~~~~~~V~~A~~~~l~~~~~~~v---~~~kv~V~~~df~~Al~~l~p~~~~~~~~~~~~~~~~~~efe~~~~~ 717 (1023)
++.+.++|++++++-..+..+ +..+++|+++||.+||++++|+ |+.++++|+.+...
T Consensus 448 ---------VksA~S~A~nR~vk~~~~~~~~~~~~e~lkV~r~DFl~aL~dVkPA-----------FG~see~l~~~~~~ 507 (744)
T KOG0741|consen 448 ---------VKSAQSFAMNRHVKAGGKVEVDPVAIENLKVTRGDFLNALEDVKPA-----------FGISEEDLERFVMN 507 (744)
T ss_pred ---------HHHHHHHHHHhhhccCcceecCchhhhheeecHHHHHHHHHhcCcc-----------cCCCHHHHHHHHhC
Confidence 566778899999975533333 3458999999999999999997 99999999999999
Q ss_pred cccCCCCCCcccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001707 718 AVVPPGEIGVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISIT 797 (1023)
Q Consensus 718 ~ii~~~e~~vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~elg~~fi~vs 797 (1023)
+++.++++ ...+.+.-..++.+ .+.++ ..+..+|||+||||+|||+||..+|..+++||+.+-
T Consensus 508 Gmi~~g~~---------v~~il~~G~llv~q-vk~s~-------~s~lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKii 570 (744)
T KOG0741|consen 508 GMINWGPP---------VTRILDDGKLLVQQ-VKNSE-------RSPLVSVLLEGPPGSGKTALAAKIALSSDFPFVKII 570 (744)
T ss_pred Cceeeccc---------HHHHHhhHHHHHHH-hhccc-------cCcceEEEEecCCCCChHHHHHHHHhhcCCCeEEEe
Confidence 99998865 33444444444433 33333 345678999999999999999999999999999976
Q ss_pred ccccchh-hhhhHHHHHHHHHHHHhhcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhcCccCCCCceEEEEEe
Q 001707 798 GSTLTSK-WFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGA 876 (1023)
Q Consensus 798 ~seL~s~-~~ge~e~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~~~~~VlVIaT 876 (1023)
.++-+.. .....+..++.+|.+|++++.+||+||+|++|+... +.++..++.++++|+.++...++ .+++++|++|
T Consensus 571 Spe~miG~sEsaKc~~i~k~F~DAYkS~lsiivvDdiErLiD~v--pIGPRfSN~vlQaL~VllK~~pp-kg~kLli~~T 647 (744)
T KOG0741|consen 571 SPEDMIGLSESAKCAHIKKIFEDAYKSPLSIIVVDDIERLLDYV--PIGPRFSNLVLQALLVLLKKQPP-KGRKLLIFGT 647 (744)
T ss_pred ChHHccCccHHHHHHHHHHHHHHhhcCcceEEEEcchhhhhccc--ccCchhhHHHHHHHHHHhccCCC-CCceEEEEec
Confidence 6654443 334568899999999999999999999999998655 44678889999999999988765 4679999999
Q ss_pred cCCCCCCcH-HHHhhcCCceeecCCCH-HHHHHHHHH
Q 001707 877 TNRPFDLDD-AVIRRLPRRIYVDLPDA-ENRMKILRI 911 (1023)
Q Consensus 877 TN~p~~Ld~-aLlrRFd~~I~V~lPd~-eeR~~ILk~ 911 (1023)
|++.+.|.+ .++..|+..++||..+. ++..+++..
T Consensus 648 TS~~~vL~~m~i~~~F~~~i~Vpnl~~~~~~~~vl~~ 684 (744)
T KOG0741|consen 648 TSRREVLQEMGILDCFSSTIHVPNLTTGEQLLEVLEE 684 (744)
T ss_pred ccHHHHHHHcCHHHhhhheeecCccCchHHHHHHHHH
Confidence 998887766 77889999999986543 666666654
No 7
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.7e-50 Score=471.46 Aligned_cols=418 Identities=33% Similarity=0.521 Sum_probs=359.6
Q ss_pred HHHHHHHHHHhhcCCeEEEEcCchhh--hhhccCCccHHHHHHHHHHHHhcCCCCEEEEecccCCCCCcccccccccccc
Q 001707 472 IAMEALCEVLHSTQPLIVYFPDSSLW--LSRAVPRCNRKEFVRKVEEMFDQLSGPVVLICGQNKNETGPKEKEKFTMILP 549 (1023)
Q Consensus 472 ~~i~~L~e~~~~~~p~Iiff~di~~~--~~~s~~~~~~~~~~s~l~~~~~~~~g~v~vI~~~~~~d~~~~~~~~~~~~~~ 549 (1023)
..+..+|+.+...+|.|+|+||+|.+ .+.+.+.....++++.+...|+++. ++.|
T Consensus 63 ~~~~~~~~~a~~~~~~ii~~d~~~~~~~~~~~~~~~~~~~v~~~l~~~~d~~~-~~~v---------------------- 119 (494)
T COG0464 63 LRLRELFEEAEKLAPSIIFIDEIDALAPKRSSDQGEVERRVVAQLLALMDGLK-RGQV---------------------- 119 (494)
T ss_pred HHHHHHHHHHHHhCCCeEeechhhhcccCccccccchhhHHHHHHHHhccccc-CCce----------------------
Confidence 47788999999999999999999997 3333466677888999999999998 4332
Q ss_pred ccccccCCCCcchhhhcccccCCCcchHHHHh--ccccEEEEcCCChHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHhh
Q 001707 550 NFGRLAKLPLPLQRLTEGLKATKRSDDNEIYN--LFTNVLSIHPPKEEDLLRTFNKQVEEDRRIVIYRSNLNELHKVLED 627 (1023)
Q Consensus 550 ~~~~~~~~~~~~~~LvIGmTNR~d~iDeaL~r--rFe~~ieI~LPdee~Rl~Il~Iht~~~~~~~~~~~~v~~l~~~l~t 627 (1023)
+++|+|||++.+|+++++ ||++++++.+|+..+|++|+.+|+..|.... ..+...++. .+
T Consensus 120 --------------~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ei~~~~~~~~~~~~--~~~~~~~a~--~~ 181 (494)
T COG0464 120 --------------IVIGATNRPDGLDPAKRRPGRFDREIEVNLPDEAGRLEILQIHTRLMFLGP--PGTGKTLAA--RT 181 (494)
T ss_pred --------------EEEeecCCccccChhHhCccccceeeecCCCCHHHHHHHHHHHHhcCCCcc--cccHHHHHH--hc
Confidence 256899999999999998 9999999999999999999999965554333 344555555 88
Q ss_pred ccCCcccccccccchhhhhhhhhhhhHhhcccccccccCCCCccCCceeeCHHHHHHHHHHhhhhhhccCCCcccccccc
Q 001707 628 HELSCTDLLHVNTDGVILTKQRAEKVVGWAKNHYLSSCSFPSVKGQRLHLPRESLEIAILRLKEQETASRKPTQNLKNLA 707 (1023)
Q Consensus 628 ~~~~gaDL~~Lc~~a~~ls~~~~~~~V~~A~~~~l~~~~~~~v~~~kv~V~~~df~~Al~~l~p~~~~~~~~~~~~~~~~ 707 (1023)
.||.++|+..+|.++......+.. ......+.++.++|..+++++.+.
T Consensus 182 ~~~~~~~~~~l~~~~~~~~~~r~~-----------------~~~~~~~~~~~~~~~~~l~~~~~~--------------- 229 (494)
T COG0464 182 VGKSGADLGALAKEAALRELRRAI-----------------DLVGEYIGVTEDDFEEALKKVLPS--------------- 229 (494)
T ss_pred CCccHHHHHHHHHHHHHHHHHhhh-----------------ccCcccccccHHHHHHHHHhcCcc---------------
Confidence 999999999999887765544421 123556788999999999887663
Q ss_pred hhhhhhhhcccccCCCCCCcccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHH
Q 001707 708 KDEYESNFVSAVVPPGEIGVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALAT 787 (1023)
Q Consensus 708 ~~efe~~~~~~ii~~~e~~vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~ 787 (1023)
..+-...+.++|+|+||++.+++.+++.+.+++.+++.|.+.+ +.+++++|||||||||||+||+|+|+
T Consensus 230 ----------~~~~~~~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~-~~~~~giLl~GpPGtGKT~lAkava~ 298 (494)
T COG0464 230 ----------RGVLFEDEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLG-LRPPKGVLLYGPPGTGKTLLAKAVAL 298 (494)
T ss_pred ----------cccccCCCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcC-CCCCCeeEEECCCCCCHHHHHHHHHh
Confidence 0011233578999999999999999999999999999998866 57888999999999999999999999
Q ss_pred HhCCcEEEEeccccchhhhhhHHHHHHHHHHHHhhcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhcCccCCC
Q 001707 788 EAGANFISITGSTLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKE 867 (1023)
Q Consensus 788 elg~~fi~vs~seL~s~~~ge~e~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~~ 867 (1023)
+++.+|+.+..++++++|+|++++.++.+|..|++.+||||||||+|.+++.+.... .....+++++|+..|+++...
T Consensus 299 ~~~~~fi~v~~~~l~sk~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~-~~~~~r~~~~lL~~~d~~e~~- 376 (494)
T COG0464 299 ESRSRFISVKGSELLSKWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSE-DGSGRRVVGQLLTELDGIEKA- 376 (494)
T ss_pred hCCCeEEEeeCHHHhccccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCC-chHHHHHHHHHHHHhcCCCcc-
Confidence 999999999999999999999999999999999999999999999999998886542 333478999999999998654
Q ss_pred CceEEEEEecCCCCCCcHHHHh--hcCCceeecCCCHHHHHHHHHHHHhccc--cCCccCHHHHHHHccCCcHHHHHHHH
Q 001707 868 SQKILILGATNRPFDLDDAVIR--RLPRRIYVDLPDAENRMKILRIFLAHES--LESGFQFNELANATEGYSGSDLKNLC 943 (1023)
Q Consensus 868 ~~~VlVIaTTN~p~~Ld~aLlr--RFd~~I~V~lPd~eeR~~ILk~~L~~~~--l~~dvdl~~LA~~TeGySgaDL~~L~ 943 (1023)
..|+||+|||+|+.+|++++| ||+..++|++|+.++|.+||+.++.... +..++++..+++.|+||+|+||..+|
T Consensus 377 -~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~ 455 (494)
T COG0464 377 -EGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALV 455 (494)
T ss_pred -CceEEEecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHHH
Confidence 469999999999999999999 9999999999999999999999998544 35789999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCCCCCCcCCCCHHHHHHHHHhhCCCcc
Q 001707 944 IAAAYRPVQELLEEERKLFIQRGKNDAAPVLRPLKLEDFIQSKAKVGPSVA 994 (1023)
Q Consensus 944 ~~Aa~~Airr~l~~e~~~~~~~~~~~~~~~~r~Lt~eDF~~Al~kv~PSvs 994 (1023)
.+|++.++++.. ...++++||..|+++++|++.
T Consensus 456 ~ea~~~~~~~~~------------------~~~~~~~~~~~a~~~~~p~~~ 488 (494)
T COG0464 456 REAALEALREAR------------------RREVTLDDFLDALKKIKPSVT 488 (494)
T ss_pred HHHHHHHHHHhc------------------cCCccHHHHHHHHHhcCCCCC
Confidence 999999998743 247999999999999999987
No 8
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.6e-49 Score=434.66 Aligned_cols=284 Identities=43% Similarity=0.757 Sum_probs=256.5
Q ss_pred CCCCcccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccc
Q 001707 723 GEIGVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLT 802 (1023)
Q Consensus 723 ~e~~vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~elg~~fi~vs~seL~ 802 (1023)
+.+++.|+||.|+.++|+.|+|+|.+|+..|+.|.. +.+|.++||++||||||||+||+|||.+++..|++|+.+.+.
T Consensus 205 ~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~G--irrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstlt 282 (491)
T KOG0738|consen 205 RNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKG--IRRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLT 282 (491)
T ss_pred cCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhh--cccccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhhh
Confidence 457899999999999999999999999999999974 468999999999999999999999999999999999999999
Q ss_pred hhhhhhHHHHHHHHHHHHhhcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhcCccCCC--CceEEEEEecCCC
Q 001707 803 SKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKE--SQKILILGATNRP 880 (1023)
Q Consensus 803 s~~~ge~e~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~~--~~~VlVIaTTN~p 880 (1023)
++|.|++|+.++-+|.+|+.++|++|||||||.|+..|++..+|++++++.++||.+|||+.... ...|+|+|+||-|
T Consensus 283 SKwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLAATN~P 362 (491)
T KOG0738|consen 283 SKWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGTLENSKVVMVLAATNFP 362 (491)
T ss_pred hhhccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhccccccccceeEEEEeccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999986542 2458999999999
Q ss_pred CCCcHHHHhhcCCceeecCCCHHHHHHHHHHHHhccccCCccCHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001707 881 FDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLESGFQFNELANATEGYSGSDLKNLCIAAAYRPVQELLEEERK 960 (1023)
Q Consensus 881 ~~Ld~aLlrRFd~~I~V~lPd~eeR~~ILk~~L~~~~l~~dvdl~~LA~~TeGySgaDL~~L~~~Aa~~Airr~l~~e~~ 960 (1023)
|+||++|+|||.++|+||+|+.+.|..+++..+....+.++++++.||+.++||||+||.++|++|.+.++||.+..-..
T Consensus 363 WdiDEAlrRRlEKRIyIPLP~~~~R~~Li~~~l~~~~~~~~~~~~~lae~~eGySGaDI~nvCreAsm~~mRR~i~g~~~ 442 (491)
T KOG0738|consen 363 WDIDEALRRRLEKRIYIPLPDAEARSALIKILLRSVELDDPVNLEDLAERSEGYSGADITNVCREASMMAMRRKIAGLTP 442 (491)
T ss_pred cchHHHHHHHHhhheeeeCCCHHHHHHHHHHhhccccCCCCccHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999987653111
Q ss_pred HHHhhCCCCCCCCcCCCCHHHHHHHHHhhCCCcccchhhHHHHHHHHHHhCC
Q 001707 961 LFIQRGKNDAAPVLRPLKLEDFIQSKAKVGPSVAYDAASMNELRKWNEQYGE 1012 (1023)
Q Consensus 961 ~~~~~~~~~~~~~~r~Lt~eDF~~Al~kv~PSvs~d~~~m~el~kW~d~yG~ 1012 (1023)
..+ .....+... .|++++||..|+.+++||++... +..+.||++.||.
T Consensus 443 ~ei-~~lakE~~~-~pv~~~Dfe~Al~~v~pSvs~~d--~~k~ekW~~efGS 490 (491)
T KOG0738|consen 443 REI-RQLAKEEPK-MPVTNEDFEEALRKVRPSVSAAD--LEKYEKWMDEFGS 490 (491)
T ss_pred HHh-hhhhhhccc-cccchhhHHHHHHHcCcCCCHHH--HHHHHHHHHHhcC
Confidence 000 011111222 68999999999999999998654 7789999999996
No 9
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-47 Score=418.95 Aligned_cols=247 Identities=39% Similarity=0.676 Sum_probs=230.1
Q ss_pred CCCCcccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccc
Q 001707 723 GEIGVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLT 802 (1023)
Q Consensus 723 ~e~~vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~elg~~fi~vs~seL~ 802 (1023)
..|.++|+||||+++++++|+|.|++|+.+|++|.+.| +.||+|||||||||||||+||+|+|++.++.|+.+.+++|+
T Consensus 144 e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~G-I~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElV 222 (406)
T COG1222 144 EKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELG-IDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELV 222 (406)
T ss_pred cCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcC-CCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHH
Confidence 34789999999999999999999999999999999999 79999999999999999999999999999999999999999
Q ss_pred hhhhhhHHHHHHHHHHHHhhcCCeEEEeccchhhhhccCCC--chhHHHHHHHHHHHhhhcCccCCCCceEEEEEecCCC
Q 001707 803 SKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGA--FEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRP 880 (1023)
Q Consensus 803 s~~~ge~e~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~--~~~e~~~ril~~LL~~Ldgl~~~~~~~VlVIaTTN~p 880 (1023)
.+|.|+....++.+|..|+.++||||||||||++..+|... ......++.+.+||++|||+.+ ..+|-||+|||++
T Consensus 223 qKYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~--~~nvKVI~ATNR~ 300 (406)
T COG1222 223 QKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDP--RGNVKVIMATNRP 300 (406)
T ss_pred HHHhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCC--CCCeEEEEecCCc
Confidence 99999999999999999999999999999999999888643 3344456667799999999965 4579999999999
Q ss_pred CCCcHHHHh--hcCCceeecCCCHHHHHHHHHHHHhccccCCccCHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHHHH
Q 001707 881 FDLDDAVIR--RLPRRIYVDLPDAENRMKILRIFLAHESLESGFQFNELANATEGYSGSDLKNLCIAAAYRPVQELLEEE 958 (1023)
Q Consensus 881 ~~Ld~aLlr--RFd~~I~V~lPd~eeR~~ILk~~L~~~~l~~dvdl~~LA~~TeGySgaDL~~L~~~Aa~~Airr~l~~e 958 (1023)
+.|||||+| ||++.|+||+|+.+.|.+||+.|.++..+..++||+.||..|+|+||+||+++|.+|.+.|+|+ .
T Consensus 301 D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~la~~~~g~sGAdlkaictEAGm~AiR~----~ 376 (406)
T COG1222 301 DILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLELLARLTEGFSGADLKAICTEAGMFAIRE----R 376 (406)
T ss_pred cccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHHHHHHhcCCCchHHHHHHHHHHhHHHHHh----c
Confidence 999999999 9999999999999999999999999999999999999999999999999999999999999986 1
Q ss_pred HHHHHhhCCCCCCCCcCCCCHHHHHHHHHhhCC
Q 001707 959 RKLFIQRGKNDAAPVLRPLKLEDFIQSKAKVGP 991 (1023)
Q Consensus 959 ~~~~~~~~~~~~~~~~r~Lt~eDF~~Al~kv~P 991 (1023)
+ ..+||+||.+|.+++..
T Consensus 377 R---------------~~Vt~~DF~~Av~KV~~ 394 (406)
T COG1222 377 R---------------DEVTMEDFLKAVEKVVK 394 (406)
T ss_pred c---------------CeecHHHHHHHHHHHHh
Confidence 2 36999999999998854
No 10
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.5e-45 Score=422.95 Aligned_cols=400 Identities=28% Similarity=0.436 Sum_probs=321.6
Q ss_pred HHHHHHHHHhhcCCeEEEEcCchhhhhhccCCccHHHHHHHHH--------HHHhcCCCCEEEEecccCCCCCccccccc
Q 001707 473 AMEALCEVLHSTQPLIVYFPDSSLWLSRAVPRCNRKEFVRKVE--------EMFDQLSGPVVLICGQNKNETGPKEKEKF 544 (1023)
Q Consensus 473 ~i~~L~e~~~~~~p~Iiff~di~~~~~~s~~~~~~~~~~s~l~--------~~~~~~~g~v~vI~~~~~~d~~~~~~~~~ 544 (1023)
.++..|-++...+|+||++||+|-+...+..+.-+...++..+ ...-++.-++.||++-+...
T Consensus 482 ~l~~vfse~~~~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~q--------- 552 (952)
T KOG0735|consen 482 FLNNVFSEALWYAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQ--------- 552 (952)
T ss_pred HHHHHHHHHHhhCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhh---------
Confidence 5666777788899999999999998875443333334433322 22233444456664433322
Q ss_pred cccccccccccCCCCcchhhhcccccCCCcchHHHHh--ccccEEEEcCCChHHHHHHHHHHHHHHhhhhhhhhhHHHHH
Q 001707 545 TMILPNFGRLAKLPLPLQRLTEGLKATKRSDDNEIYN--LFTNVLSIHPPKEEDLLRTFNKQVEEDRRIVIYRSNLNELH 622 (1023)
Q Consensus 545 ~~~~~~~~~~~~~~~~~~~LvIGmTNR~d~iDeaL~r--rFe~~ieI~LPdee~Rl~Il~Iht~~~~~~~~~~~~v~~l~ 622 (1023)
.|.+-|.. +|..++-++.|+...|.+||..-..+ +......++++.++
T Consensus 553 -----------------------------tl~~~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~-~~~~~~~~dLd~ls 602 (952)
T KOG0735|consen 553 -----------------------------TLNPLLVSPLLFQIVIALPAPAVTRRKEILTTIFSK-NLSDITMDDLDFLS 602 (952)
T ss_pred -----------------------------hcChhhcCccceEEEEecCCcchhHHHHHHHHHHHh-hhhhhhhHHHHHHH
Confidence 23333332 99999999999999999999865433 22334555666655
Q ss_pred HHHhhccCCcccccccccchhhhhhhhhhhhHhhcccccccccCCCCccCCceeeCHHHHHHHHHHhhhhhhccCCCccc
Q 001707 623 KVLEDHELSCTDLLHVNTDGVILTKQRAEKVVGWAKNHYLSSCSFPSVKGQRLHLPRESLEIAILRLKEQETASRKPTQN 702 (1023)
Q Consensus 623 ~~l~t~~~~gaDL~~Lc~~a~~ls~~~~~~~V~~A~~~~l~~~~~~~v~~~kv~V~~~df~~Al~~l~p~~~~~~~~~~~ 702 (1023)
. +|-||.--||.-+ ++.++..|+-.-.. +..+ .++.++|..+|....|..-+.-+
T Consensus 603 ~--~TEGy~~~DL~if-----------VeRai~~a~leris-------~~~k-lltke~f~ksL~~F~P~aLR~ik---- 657 (952)
T KOG0735|consen 603 V--KTEGYLATDLVIF-----------VERAIHEAFLERIS-------NGPK-LLTKELFEKSLKDFVPLALRGIK---- 657 (952)
T ss_pred H--hcCCccchhHHHH-----------HHHHHHHHHHHHhc-------cCcc-cchHHHHHHHHHhcChHHhhhcc----
Confidence 4 8889988788654 45566666511111 2334 68999999999988886322111
Q ss_pred ccccchhhhhhhhcccccCCCCCCcccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHH
Q 001707 703 LKNLAKDEYESNFVSAVVPPGEIGVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLA 782 (1023)
Q Consensus 703 ~~~~~~~efe~~~~~~ii~~~e~~vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LA 782 (1023)
-....+..|+||||+.++++.|++.+++|.+.|.+|...+ ++-+.|||||||||||||+||
T Consensus 658 ------------------~~k~tgi~w~digg~~~~k~~l~~~i~~P~kyp~if~~~p-lr~~~giLLyGppGcGKT~la 718 (952)
T KOG0735|consen 658 ------------------LVKSTGIRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCP-LRLRTGILLYGPPGCGKTLLA 718 (952)
T ss_pred ------------------ccccCCCCceecccHHHHHHHHHHHHhccccchHHHhhCC-cccccceEEECCCCCcHHHHH
Confidence 1112347899999999999999999999999999999988 567789999999999999999
Q ss_pred HHHHHHhCCcEEEEeccccchhhhhhHHHHHHHHHHHHhhcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhcC
Q 001707 783 KALATEAGANFISITGSTLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDG 862 (1023)
Q Consensus 783 rAIA~elg~~fi~vs~seL~s~~~ge~e~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldg 862 (1023)
.|+|..+++.|+.+.+++++++|.|.+|+.++.+|..|+..+|||||+||+|+++++|+.. ...+..++.|+||++|||
T Consensus 719 ~a~a~~~~~~fisvKGPElL~KyIGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhD-sTGVTDRVVNQlLTelDG 797 (952)
T KOG0735|consen 719 SAIASNSNLRFISVKGPELLSKYIGASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHD-STGVTDRVVNQLLTELDG 797 (952)
T ss_pred HHHHhhCCeeEEEecCHHHHHHHhcccHHHHHHHHHHhhccCCeEEEeccccccCcccCCC-CCCchHHHHHHHHHhhcc
Confidence 9999999999999999999999999999999999999999999999999999999998653 356789999999999999
Q ss_pred ccCCCCceEEEEEecCCCCCCcHHHHh--hcCCceeecCCCHHHHHHHHHHHHhccccCCccCHHHHHHHccCCcHHHHH
Q 001707 863 LRSKESQKILILGATNRPFDLDDAVIR--RLPRRIYVDLPDAENRMKILRIFLAHESLESGFQFNELANATEGYSGSDLK 940 (1023)
Q Consensus 863 l~~~~~~~VlVIaTTN~p~~Ld~aLlr--RFd~~I~V~lPd~eeR~~ILk~~L~~~~l~~dvdl~~LA~~TeGySgaDL~ 940 (1023)
... -..|.|+|+|.+|+.+|++++| |+++.++.++|+..+|.+||+.+.....+..++|++.+|.+|+||||+||.
T Consensus 798 ~Eg--l~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~~vdl~~~a~~T~g~tgADlq 875 (952)
T KOG0735|consen 798 AEG--LDGVYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKDTDVDLECLAQKTDGFTGADLQ 875 (952)
T ss_pred ccc--cceEEEEEecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCccccchHHHhhhcCCCchhhHH
Confidence 865 4579999999999999999999 999999999999999999999999888888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 001707 941 NLCIAAAYRPVQELLEEE 958 (1023)
Q Consensus 941 ~L~~~Aa~~Airr~l~~e 958 (1023)
.|+..|.+.|+++++..+
T Consensus 876 ~ll~~A~l~avh~~l~~~ 893 (952)
T KOG0735|consen 876 SLLYNAQLAAVHEILKRE 893 (952)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 999999999999988643
No 11
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.3e-44 Score=384.25 Aligned_cols=292 Identities=39% Similarity=0.702 Sum_probs=255.6
Q ss_pred ccccCCCCCCcccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001707 717 SAVVPPGEIGVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISI 796 (1023)
Q Consensus 717 ~~ii~~~e~~vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~elg~~fi~v 796 (1023)
++.|-...|++.|+|+.|++..|++|++.|.+|+..|++|... .+|.++|||||||||||++||+|+|.+.+..|+.+
T Consensus 120 ~sAIv~EKPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtGk--R~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSv 197 (439)
T KOG0739|consen 120 NSAIVREKPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTGK--RKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSV 197 (439)
T ss_pred hhhhhccCCCCchhhhccchhHHHHHHhheeecccchhhhcCC--CCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEe
Confidence 3444456789999999999999999999999999999999744 58999999999999999999999999999999999
Q ss_pred eccccchhhhhhHHHHHHHHHHHHhhcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhcCccCCCCceEEEEEe
Q 001707 797 TGSTLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGA 876 (1023)
Q Consensus 797 s~seL~s~~~ge~e~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~~~~~VlVIaT 876 (1023)
+.++|+++|.|++++.++++|.+|+.++|+||||||||.+++.|... +.++.+++..+||.+|.|+.. .+..|+|+++
T Consensus 198 SSSDLvSKWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~en-EseasRRIKTEfLVQMqGVG~-d~~gvLVLgA 275 (439)
T KOG0739|consen 198 SSSDLVSKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSEN-ESEASRRIKTEFLVQMQGVGN-DNDGVLVLGA 275 (439)
T ss_pred ehHHHHHHHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCC-chHHHHHHHHHHHHhhhcccc-CCCceEEEec
Confidence 99999999999999999999999999999999999999999888654 688999999999999999864 4678999999
Q ss_pred cCCCCCCcHHHHhhcCCceeecCCCHHHHHHHHHHHHhcccc-CCccCHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHH
Q 001707 877 TNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESL-ESGFQFNELANATEGYSGSDLKNLCIAAAYRPVQELL 955 (1023)
Q Consensus 877 TN~p~~Ld~aLlrRFd~~I~V~lPd~eeR~~ILk~~L~~~~l-~~dvdl~~LA~~TeGySgaDL~~L~~~Aa~~Airr~l 955 (1023)
||-||.||.+++|||.++|++|+|+...|..+|+.++...+. ..+.|+.+|+.+|+||||+||.-+++.|.+.++|++-
T Consensus 276 TNiPw~LDsAIRRRFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGySGsDisivVrDalmePvRkvq 355 (439)
T KOG0739|consen 276 TNIPWVLDSAIRRRFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGYSGSDISIVVRDALMEPVRKVQ 355 (439)
T ss_pred CCCchhHHHHHHHHhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCCCcCceEEEehhhhhhhHHHhh
Confidence 999999999999999999999999999999999999886553 3778999999999999999999999999999999875
Q ss_pred HHHHHHHHhhCC---------------------------CCCCCCcCCCCHHHHHHHHHhhCCCcccchhhHHHHHHHHH
Q 001707 956 EEERKLFIQRGK---------------------------NDAAPVLRPLKLEDFIQSKAKVGPSVAYDAASMNELRKWNE 1008 (1023)
Q Consensus 956 ~~e~~~~~~~~~---------------------------~~~~~~~r~Lt~eDF~~Al~kv~PSvs~d~~~m~el~kW~d 1008 (1023)
....-....+.. .....-..+|||.||.+++...+|.+..++ +...+++++
T Consensus 356 sAthFk~v~~~s~~~~~~~lltpcspgd~ga~em~w~dv~~dkl~eP~vt~~D~~k~l~~tkPTvn~~D--l~k~~~Ft~ 433 (439)
T KOG0739|consen 356 SATHFKKVSGPSNPSEVDDLLTPCSPGDPGAIEMSWMDVPADKLLEPPVTMRDFLKSLSRTKPTVNEDD--LLKHEKFTE 433 (439)
T ss_pred hhhhhhccCCCCChhhhccccCCCCCCCcchhhhhhccCCHhhccCCCccHHHHHHHHhhcCCCCCHHH--HHHHHHHHH
Confidence 432211111100 000112357999999999999999998775 667889999
Q ss_pred HhCCCC
Q 001707 1009 QYGEGG 1014 (1023)
Q Consensus 1009 ~yG~~g 1014 (1023)
.||..|
T Consensus 434 dFGqEg 439 (439)
T KOG0739|consen 434 DFGQEG 439 (439)
T ss_pred hhccCC
Confidence 999876
No 12
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.6e-44 Score=406.40 Aligned_cols=289 Identities=34% Similarity=0.574 Sum_probs=257.2
Q ss_pred CCcccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccchh
Q 001707 725 IGVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTSK 804 (1023)
Q Consensus 725 ~~vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~elg~~fi~vs~seL~s~ 804 (1023)
.+++|.||||+++...+|.+++.. +.+|+.|...| +.|++|||||||||||||+||+|||.++++||+.+++++++++
T Consensus 185 snv~f~diGG~d~~~~el~~li~~-i~~Pe~~~~lG-v~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSG 262 (802)
T KOG0733|consen 185 SNVSFSDIGGLDKTLAELCELIIH-IKHPEVFSSLG-VRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSG 262 (802)
T ss_pred CCcchhhccChHHHHHHHHHHHHH-hcCchhHhhcC-CCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhcc
Confidence 478999999999999999999988 99999999999 6899999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHhhcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhcCccCC--CCceEEEEEecCCCCC
Q 001707 805 WFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSK--ESQKILILGATNRPFD 882 (1023)
Q Consensus 805 ~~ge~e~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~--~~~~VlVIaTTN~p~~ 882 (1023)
+.|++|+.++.+|..|+...|||+||||||.+.++|.. ...++.++++.+|++.||++... .+.+|+||||||+|+.
T Consensus 263 vSGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~-aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPDs 341 (802)
T KOG0733|consen 263 VSGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREE-AQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPDS 341 (802)
T ss_pred cCcccHHHHHHHHHHHhccCCeEEEeecccccccchhh-HHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCcc
Confidence 99999999999999999999999999999999999987 46888999999999999998655 3478999999999999
Q ss_pred CcHHHHh--hcCCceeecCCCHHHHHHHHHHHHhccccCCccCHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001707 883 LDDAVIR--RLPRRIYVDLPDAENRMKILRIFLAHESLESGFQFNELANATEGYSGSDLKNLCIAAAYRPVQELLEEERK 960 (1023)
Q Consensus 883 Ld~aLlr--RFd~~I~V~lPd~eeR~~ILk~~L~~~~l~~dvdl~~LA~~TeGySgaDL~~L~~~Aa~~Airr~l~~e~~ 960 (1023)
||++|+| ||++.|.+..|+..+|.+||+.++++..+..++|+..||..|.||.|+||.+||.+|+..|++|++.....
T Consensus 342 lDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~~qlA~lTPGfVGADL~AL~~~Aa~vAikR~ld~~~~ 421 (802)
T KOG0733|consen 342 LDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFDFKQLAKLTPGFVGADLMALCREAAFVAIKRILDQSSS 421 (802)
T ss_pred cCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcCHHHHHhcCCCccchhHHHHHHHHHHHHHHHHhhcccC
Confidence 9999999 99999999999999999999999999999999999999999999999999999999999999998863210
Q ss_pred --H----------------H----------------------HhhCCC---CCCCCcCCCCHHHHHHHHHhhCCCcccch
Q 001707 961 --L----------------F----------------------IQRGKN---DAAPVLRPLKLEDFIQSKAKVGPSVAYDA 997 (1023)
Q Consensus 961 --~----------------~----------------------~~~~~~---~~~~~~r~Lt~eDF~~Al~kv~PSvs~d~ 997 (1023)
. . +..... ......-.|+++||.+|+..++||...+.
T Consensus 422 p~~~~~~~ed~~~~~~~~d~S~i~~~~~~~~~~~ld~v~~~~i~~~~d~~S~E~~~~L~i~~eDF~~Al~~iQPSakREG 501 (802)
T KOG0733|consen 422 PLTKVPISEDSSNKDAEEDQSSIKITSNAERPLELDRVVQDAILNNPDPLSKELLEGLSIKFEDFEEALSKIQPSAKREG 501 (802)
T ss_pred ccccCCccccccCCCccchhhhhhcCCcccccccHHHHHHHHHHhCCCCcChHHhccceecHHHHHHHHHhcCcchhccc
Confidence 0 0 000000 01112335889999999999999999888
Q ss_pred hhHHHHHHHHHHhCCCCCC
Q 001707 998 ASMNELRKWNEQYGEGGSR 1016 (1023)
Q Consensus 998 ~~m~el~kW~d~yG~~g~r 1016 (1023)
..--.-..|++++|....|
T Consensus 502 F~tVPdVtW~dIGaL~~vR 520 (802)
T KOG0733|consen 502 FATVPDVTWDDIGALEEVR 520 (802)
T ss_pred ceecCCCChhhcccHHHHH
Confidence 7776777999999876555
No 13
>CHL00195 ycf46 Ycf46; Provisional
Probab=100.00 E-value=7.2e-38 Score=366.31 Aligned_cols=259 Identities=23% Similarity=0.389 Sum_probs=226.3
Q ss_pred CCCcccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccch
Q 001707 724 EIGVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTS 803 (1023)
Q Consensus 724 e~~vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~elg~~fi~vs~seL~s 803 (1023)
.+.++|+||||++.+|+.|.+....+ +..+...| +.+++|||||||||||||++|+++|.+++.+|+.++++.+.+
T Consensus 222 ~~~~~~~dvgGl~~lK~~l~~~~~~~---~~~~~~~g-l~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~ 297 (489)
T CHL00195 222 SVNEKISDIGGLDNLKDWLKKRSTSF---SKQASNYG-LPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFG 297 (489)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHh---hHHHHhcC-CCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhcc
Confidence 35678999999999999998765332 12233445 577899999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHHhhcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhcCccCCCCceEEEEEecCCCCCC
Q 001707 804 KWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPFDL 883 (1023)
Q Consensus 804 ~~~ge~e~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~~~~~VlVIaTTN~p~~L 883 (1023)
+|.|+++..++.+|..|+..+||||||||||.++..+..........+++++|+..|+.. ..+|+||||||.++.|
T Consensus 298 ~~vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~----~~~V~vIaTTN~~~~L 373 (489)
T CHL00195 298 GIVGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEK----KSPVFVVATANNIDLL 373 (489)
T ss_pred cccChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcC----CCceEEEEecCChhhC
Confidence 999999999999999999999999999999999876554445567788999999988753 3579999999999999
Q ss_pred cHHHHh--hcCCceeecCCCHHHHHHHHHHHHhccccC--CccCHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 001707 884 DDAVIR--RLPRRIYVDLPDAENRMKILRIFLAHESLE--SGFQFNELANATEGYSGSDLKNLCIAAAYRPVQELLEEER 959 (1023)
Q Consensus 884 d~aLlr--RFd~~I~V~lPd~eeR~~ILk~~L~~~~l~--~dvdl~~LA~~TeGySgaDL~~L~~~Aa~~Airr~l~~e~ 959 (1023)
|++++| ||+..++|++|+.++|.+||+.++.+.... .+.++..||..|+||||+||.++|.+|+..|+.+
T Consensus 374 d~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv~eA~~~A~~~------ 447 (489)
T CHL00195 374 PLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSIIEAMYIAFYE------ 447 (489)
T ss_pred CHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHc------
Confidence 999998 999999999999999999999999876432 5789999999999999999999999999888753
Q ss_pred HHHHhhCCCCCCCCcCCCCHHHHHHHHHhhCCCcccchhhHHHHHHHHHHh
Q 001707 960 KLFIQRGKNDAAPVLRPLKLEDFIQSKAKVGPSVAYDAASMNELRKWNEQY 1010 (1023)
Q Consensus 960 ~~~~~~~~~~~~~~~r~Lt~eDF~~Al~kv~PSvs~d~~~m~el~kW~d~y 1010 (1023)
.++++.+||..|++++.|+...+...++.+++|...+
T Consensus 448 --------------~~~lt~~dl~~a~~~~~Pls~~~~e~i~~~~~Wa~~~ 484 (489)
T CHL00195 448 --------------KREFTTDDILLALKQFIPLAQTEKEQIEALQNWASSG 484 (489)
T ss_pred --------------CCCcCHHHHHHHHHhcCCCcccCHHHHHHHHHHHHcC
Confidence 1579999999999999999887877889999998763
No 14
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-39 Score=368.24 Aligned_cols=274 Identities=34% Similarity=0.554 Sum_probs=237.9
Q ss_pred cccCCCCCCcccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001707 718 AVVPPGEIGVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISIT 797 (1023)
Q Consensus 718 ~ii~~~e~~vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~elg~~fi~vs 797 (1023)
.+.|....+++|+|+-|.++.|++|+|.|.+ |+.|..|.+.| -+-|+||||.||||||||+||+|+|.+.++||+...
T Consensus 292 ev~p~~~~nv~F~dVkG~DEAK~ELeEiVef-LkdP~kftrLG-GKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~s 369 (752)
T KOG0734|consen 292 EVDPEQMKNVTFEDVKGVDEAKQELEEIVEF-LKDPTKFTRLG-GKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYAS 369 (752)
T ss_pred ccChhhhcccccccccChHHHHHHHHHHHHH-hcCcHHhhhcc-CcCCCceEEeCCCCCchhHHHHHhhcccCCCeEecc
Confidence 3445555689999999999999999998876 99999999987 367799999999999999999999999999999999
Q ss_pred ccccchhhhhhHHHHHHHHHHHHhhcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhcCccCCCCceEEEEEec
Q 001707 798 GSTLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGAT 877 (1023)
Q Consensus 798 ~seL~s~~~ge~e~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~~~~~VlVIaTT 877 (1023)
++++-..++|...+.++.+|..|++.+||||||||||.+.++|.....+ ..++.+|+||..|||+..+ ..|+|||+|
T Consensus 370 GSEFdEm~VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~-y~kqTlNQLLvEmDGF~qN--eGiIvigAT 446 (752)
T KOG0734|consen 370 GSEFDEMFVGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQH-YAKQTLNQLLVEMDGFKQN--EGIIVIGAT 446 (752)
T ss_pred ccchhhhhhcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHH-HHHHHHHHHHHHhcCcCcC--CceEEEecc
Confidence 9999999999999999999999999999999999999999998765444 8899999999999999654 579999999
Q ss_pred CCCCCCcHHHHh--hcCCceeecCCCHHHHHHHHHHHHhccccCCccCHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHH
Q 001707 878 NRPFDLDDAVIR--RLPRRIYVDLPDAENRMKILRIFLAHESLESGFQFNELANATEGYSGSDLKNLCIAAAYRPVQELL 955 (1023)
Q Consensus 878 N~p~~Ld~aLlr--RFd~~I~V~lPd~eeR~~ILk~~L~~~~l~~dvdl~~LA~~TeGySgaDL~~L~~~Aa~~Airr~l 955 (1023)
|.|+.||++|+| ||++.|.||.||...|.+||+.++.+..+..++|...||+-|.||+|+||.||++.|+..|.....
T Consensus 447 Nfpe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~~~VD~~iiARGT~GFsGAdLaNlVNqAAlkAa~dga 526 (752)
T KOG0734|consen 447 NFPEALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLDEDVDPKIIARGTPGFSGADLANLVNQAALKAAVDGA 526 (752)
T ss_pred CChhhhhHHhcCCCccceeEecCCCCcccHHHHHHHHHhcCCcccCCCHhHhccCCCCCchHHHHHHHHHHHHHHHhcCc
Confidence 999999999999 999999999999999999999999999999999999999999999999999999999998865321
Q ss_pred HHHHHHHHhhCCCCCCCCcCCCCHHHHHHHHHhhCCCcccchhhHHHHHHHHHHhCCCCC
Q 001707 956 EEERKLFIQRGKNDAAPVLRPLKLEDFIQSKAKVGPSVAYDAASMNELRKWNEQYGEGGS 1015 (1023)
Q Consensus 956 ~~e~~~~~~~~~~~~~~~~r~Lt~eDF~~Al~kv~PSvs~d~~~m~el~kW~d~yG~~g~ 1015 (1023)
..++|.|++-|..++----.+.....++--+-.--|=+||.
T Consensus 527 -------------------~~VtM~~LE~akDrIlMG~ERks~~i~~eak~~TAyHE~GH 567 (752)
T KOG0734|consen 527 -------------------EMVTMKHLEFAKDRILMGPERKSMVIDEEAKKITAYHEGGH 567 (752)
T ss_pred -------------------ccccHHHHhhhhhheeecccccccccChhhhhhhhhhccCc
Confidence 35999999999987743222222222233333444556654
No 15
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.4e-40 Score=397.44 Aligned_cols=306 Identities=19% Similarity=0.217 Sum_probs=226.9
Q ss_pred HHHHHHHHhhcCCeEEEEcCchhh--hhhccCCccHHHHHHHHHHHHhcCCCCEEEEecccCCCCCcccccccccccccc
Q 001707 474 MEALCEVLHSTQPLIVYFPDSSLW--LSRAVPRCNRKEFVRKVEEMFDQLSGPVVLICGQNKNETGPKEKEKFTMILPNF 551 (1023)
Q Consensus 474 i~~L~e~~~~~~p~Iiff~di~~~--~~~s~~~~~~~~~~s~l~~~~~~~~g~v~vI~~~~~~d~~~~~~~~~~~~~~~~ 551 (1023)
+.-|||||+++||+|||||||||+ +++|||+|+|++|||||+++||+|++++.|+
T Consensus 352 lrllFeeA~k~qPSIIffdeIdGlapvrSskqEqih~SIvSTLLaLmdGldsRgqVv----------------------- 408 (1080)
T KOG0732|consen 352 LRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDGLDSRGQVV----------------------- 408 (1080)
T ss_pred HHHHHHHHhccCceEEeccccccccccccchHHHhhhhHHHHHHHhccCCCCCCceE-----------------------
Confidence 456999999999999999999997 8889999999999999999999999544444
Q ss_pred ccccCCCCcchhhhcccccCCCcchHHHHh--ccccEEEEcCCChHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhcc
Q 001707 552 GRLAKLPLPLQRLTEGLKATKRSDDNEIYN--LFTNVLSIHPPKEEDLLRTFNKQVEEDRRIVIYRSNLNELHKVLEDHE 629 (1023)
Q Consensus 552 ~~~~~~~~~~~~LvIGmTNR~d~iDeaL~r--rFe~~ieI~LPdee~Rl~Il~Iht~~~~~~~~~~~~v~~l~~~l~t~~ 629 (1023)
|||+|||+|-||+||+| ||+++|||+||+.++|.+|+.|||.+ |.......-...|++ .+.|
T Consensus 409 -------------vigATnRpda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrk-w~~~i~~~l~~~la~--~t~g 472 (1080)
T KOG0732|consen 409 -------------VIGATNRPDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRK-WEPPISRELLLWLAE--ETSG 472 (1080)
T ss_pred -------------EEcccCCccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccC-CCCCCCHHHHHHHHH--hccc
Confidence 45889999999999998 99999999999999999999999544 445556666777777 8889
Q ss_pred CCcccccccccchhhhhhhhhhhhHhhcccccccccCCCCccCCceeeCHHHHHHHHHHhhhhhhccC-CCcc----ccc
Q 001707 630 LSCTDLLHVNTDGVILTKQRAEKVVGWAKNHYLSSCSFPSVKGQRLHLPRESLEIAILRLKEQETASR-KPTQ----NLK 704 (1023)
Q Consensus 630 ~~gaDL~~Lc~~a~~ls~~~~~~~V~~A~~~~l~~~~~~~v~~~kv~V~~~df~~Al~~l~p~~~~~~-~~~~----~~~ 704 (1023)
|.||||++|||+|+++..++.++++ |.+..+..++...++|.-.+|..|+.++.|++.+.. .... .++
T Consensus 473 y~gaDlkaLCTeAal~~~~r~~Pq~-------y~s~~kl~~d~~~ikV~~~~f~~A~~~i~ps~~R~~~~~s~Pl~~~~~ 545 (1080)
T KOG0732|consen 473 YGGADLKALCTEAALIALRRSFPQI-------YSSSDKLLIDVALIKVEVRDFVEAMSRITPSSRRSSVIFSRPLSTYLK 545 (1080)
T ss_pred cchHHHHHHHHHHhhhhhccccCee-------ecccccccccchhhhhhhHhhhhhhhccCCCCCccccCCCCCCCccee
Confidence 9999999999999999877755554 444445557888888999999999999999865422 1111 122
Q ss_pred ccch-hhhhhhhcccccCCCCCCcccccccChHHHHHHHHHHHHcccCCchh-hccCCCCCCCceEEEEcCCCChHHHHH
Q 001707 705 NLAK-DEYESNFVSAVVPPGEIGVRFDDIGALEDVKKALNELVILPMRRPDL-FSRGNLLRPCKGILLFGPPGTGKTLLA 782 (1023)
Q Consensus 705 ~~~~-~efe~~~~~~ii~~~e~~vtfdDIgGle~vk~~L~e~V~~pL~~pel-f~~~gli~p~~gVLL~GPPGTGKT~LA 782 (1023)
.+.. ..+... +.. +.-+......+.+...+..+.-+. |.-.-+..| .+||.|..|.|.+++.
T Consensus 546 ~ll~~~~~~~~-iq~-------------~~~va~~~~k~~e~~~~~v~~~e~~~~i~lic~~--~lli~~~~~~g~~~lg 609 (1080)
T KOG0732|consen 546 PLLPFQDALED-IQG-------------LMDVASSMAKIEEHLKLLVRSFESNFAIRLICRP--RLLINGGKGSGQDYLG 609 (1080)
T ss_pred cccchHHHHHH-hhc-------------chhHHhhhhhHHHHhHHHHHhhhcccchhhhcCc--HHhcCCCcccccCccc
Confidence 2211 001000 111 111122222222222221111110 111112233 4889999999999999
Q ss_pred HHHHHHh-CCcEEEEeccccchhh-hhhHHHHHHHHHHHHhhcCCeEEEeccchhhhhccC
Q 001707 783 KALATEA-GANFISITGSTLTSKW-FGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARG 841 (1023)
Q Consensus 783 rAIA~el-g~~fi~vs~seL~s~~-~ge~e~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~ 841 (1023)
.||.+.+ +.++.....+.++... ....+..|..+|.+|++..||||||.++|.|.....
T Consensus 610 ~aIlh~~~~~~v~s~~issll~d~~~~~~~~~iv~i~~eaR~~~psi~~ip~~d~w~~~~p 670 (1080)
T KOG0732|consen 610 PAILHRLEGLPVQSLDISSLLSDEGTEDLEEEIVHIFMEARKTTPSIVFIPNVDEWARVIP 670 (1080)
T ss_pred HHHHHHHhccchHHHHHHHHHhccccccHHHHHHHHHHHHhccCCceeeccchhhhhhcCc
Confidence 9999988 8899888888888776 677899999999999999999999999999975543
No 16
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.8e-38 Score=356.96 Aligned_cols=289 Identities=44% Similarity=0.752 Sum_probs=257.7
Q ss_pred hhcccccCCCCCCcccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcE
Q 001707 714 NFVSAVVPPGEIGVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANF 793 (1023)
Q Consensus 714 ~~~~~ii~~~e~~vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~elg~~f 793 (1023)
.+.+.|+. ....+.|+|+.|++.+++.+.+++.+|+.++++|... ..|.+++||+||||+|||+|++|||.++++.|
T Consensus 138 ~i~~EI~~-~~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~gl--r~p~rglLLfGPpgtGKtmL~~aiAsE~~atf 214 (428)
T KOG0740|consen 138 GIRNEIGD-TLRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGL--REPVRGLLLFGPPGTGKTMLAKAIATESGATF 214 (428)
T ss_pred HHHHHHhc-cCCcccccCCcchhhHHHHhhhhhhhcccchHhhhcc--ccccchhheecCCCCchHHHHHHHHhhhcceE
Confidence 33444443 3456999999999999999999999999999999754 57889999999999999999999999999999
Q ss_pred EEEeccccchhhhhhHHHHHHHHHHHHhhcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhcCccCCCCceEEE
Q 001707 794 ISITGSTLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILI 873 (1023)
Q Consensus 794 i~vs~seL~s~~~ge~e~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~~~~~VlV 873 (1023)
+.++++.|.++|.|+.++.++.+|..|+..+|+||||||||.++..| ...+++..+++..+++..+++.......+|+|
T Consensus 215 f~iSassLtsK~~Ge~eK~vralf~vAr~~qPsvifidEidslls~R-s~~e~e~srr~ktefLiq~~~~~s~~~drvlv 293 (428)
T KOG0740|consen 215 FNISASSLTSKYVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKR-SDNEHESSRRLKTEFLLQFDGKNSAPDDRVLV 293 (428)
T ss_pred eeccHHHhhhhccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhc-CCcccccchhhhhHHHhhhccccCCCCCeEEE
Confidence 99999999999999999999999999999999999999999999998 45578889999999999999999888889999
Q ss_pred EEecCCCCCCcHHHHhhcCCceeecCCCHHHHHHHHHHHHhccc-cCCccCHHHHHHHccCCcHHHHHHHHHHHHHHHHH
Q 001707 874 LGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHES-LESGFQFNELANATEGYSGSDLKNLCIAAAYRPVQ 952 (1023)
Q Consensus 874 IaTTN~p~~Ld~aLlrRFd~~I~V~lPd~eeR~~ILk~~L~~~~-l~~dvdl~~LA~~TeGySgaDL~~L~~~Aa~~Air 952 (1023)
|||||.|+.+|++++|||..++++|+|+.+.|..+|+.++.+.+ ...+.+++.||+.|+||+++||.++|.+|++..++
T Consensus 294 igaTN~P~e~Dea~~Rrf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Tegysgsdi~~l~kea~~~p~r 373 (428)
T KOG0740|consen 294 IGATNRPWELDEAARRRFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEGYSGSDITALCKEAAMGPLR 373 (428)
T ss_pred EecCCCchHHHHHHHHHhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCcccccHHHHHHHhhcCchh
Confidence 99999999999999999999999999999999999999998773 33668899999999999999999999999999998
Q ss_pred HHHHHHHHHHHhhCCCCCCCCcCCCCHHHHHHHHHhhCCCcccchhhHHHHHHHHHHhCCCC
Q 001707 953 ELLEEERKLFIQRGKNDAAPVLRPLKLEDFIQSKAKVGPSVAYDAASMNELRKWNEQYGEGG 1014 (1023)
Q Consensus 953 r~l~~e~~~~~~~~~~~~~~~~r~Lt~eDF~~Al~kv~PSvs~d~~~m~el~kW~d~yG~~g 1014 (1023)
........ ........|+++..||..|++.++|+++.+. +..+.+|+..+|..+
T Consensus 374 ~~~~~~~~------~~~~~~~~r~i~~~df~~a~~~i~~~~s~~~--l~~~~~~~~~fg~~~ 427 (428)
T KOG0740|consen 374 ELGGTTDL------EFIDADKIRPITYPDFKNAFKNIKPSVSLEG--LEKYEKWDKEFGSSE 427 (428)
T ss_pred hcccchhh------hhcchhccCCCCcchHHHHHHhhccccCccc--cchhHHHhhhhcccc
Confidence 76543111 1123355789999999999999999999875 566899999999864
No 17
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.5e-37 Score=322.39 Aligned_cols=246 Identities=34% Similarity=0.596 Sum_probs=226.5
Q ss_pred CCCCcccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccc
Q 001707 723 GEIGVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLT 802 (1023)
Q Consensus 723 ~e~~vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~elg~~fi~vs~seL~ 802 (1023)
..|..+++||||++.++++|.+++.+|+.+++.|.+.| ++||+|||+|||||||||.+|+|.|...+..|..+-++.|+
T Consensus 164 ekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lg-i~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLV 242 (424)
T KOG0652|consen 164 EKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLG-IRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQLV 242 (424)
T ss_pred cCCcccccccccHHHHHHHHHHHhccccccHHHHHhcC-CCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHHH
Confidence 44678999999999999999999999999999999999 79999999999999999999999999999999999999999
Q ss_pred hhhhhhHHHHHHHHHHHHhhcCCeEEEeccchhhhhccCCC---chhHHHHHHHHHHHhhhcCccCCCCceEEEEEecCC
Q 001707 803 SKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGA---FEHEATRRMRNEFMSAWDGLRSKESQKILILGATNR 879 (1023)
Q Consensus 803 s~~~ge~e~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~---~~~e~~~ril~~LL~~Ldgl~~~~~~~VlVIaTTN~ 879 (1023)
.+|.|+..+.++..|..|+..+|+||||||+|.+..+|..+ +..++ .+.+.+|+.++||+.+ ..+|-||++||+
T Consensus 243 QMfIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREV-QRTMLELLNQLDGFss--~~~vKviAATNR 319 (424)
T KOG0652|consen 243 QMFIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREV-QRTMLELLNQLDGFSS--DDRVKVIAATNR 319 (424)
T ss_pred hhhhcchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHH-HHHHHHHHHhhcCCCC--ccceEEEeeccc
Confidence 99999999999999999999999999999999999887643 23444 4556689999999965 457999999999
Q ss_pred CCCCcHHHHh--hcCCceeecCCCHHHHHHHHHHHHhccccCCccCHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHHH
Q 001707 880 PFDLDDAVIR--RLPRRIYVDLPDAENRMKILRIFLAHESLESGFQFNELANATEGYSGSDLKNLCIAAAYRPVQELLEE 957 (1023)
Q Consensus 880 p~~Ld~aLlr--RFd~~I~V~lPd~eeR~~ILk~~L~~~~l~~dvdl~~LA~~TeGySgaDL~~L~~~Aa~~Airr~l~~ 957 (1023)
.+.|||+++| |+++.|.||.|+.+.|.+|++.+.++..+.++++|++||+.|++|+|++.+++|.+|.+.|+|+..
T Consensus 320 vDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaRsTddFNGAQcKAVcVEAGMiALRr~a-- 397 (424)
T KOG0652|consen 320 VDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELARSTDDFNGAQCKAVCVEAGMIALRRGA-- 397 (424)
T ss_pred ccccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhhcccccCchhheeeehhhhHHHHhccc--
Confidence 9999999999 999999999999999999999999999999999999999999999999999999999999998732
Q ss_pred HHHHHHhhCCCCCCCCcCCCCHHHHHHHHHhhCC
Q 001707 958 ERKLFIQRGKNDAAPVLRPLKLEDFIQSKAKVGP 991 (1023)
Q Consensus 958 e~~~~~~~~~~~~~~~~r~Lt~eDF~~Al~kv~P 991 (1023)
..++.+||.+++.++++
T Consensus 398 -----------------tev~heDfmegI~eVqa 414 (424)
T KOG0652|consen 398 -----------------TEVTHEDFMEGILEVQA 414 (424)
T ss_pred -----------------ccccHHHHHHHHHHHHH
Confidence 25889999999988764
No 18
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.9e-36 Score=316.08 Aligned_cols=247 Identities=35% Similarity=0.595 Sum_probs=224.5
Q ss_pred CCcccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccchh
Q 001707 725 IGVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTSK 804 (1023)
Q Consensus 725 ~~vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~elg~~fi~vs~seL~s~ 804 (1023)
|+.+++-+||++.+++++++.+.+|..+|++|...| +..|+|||||||||||||.||+|+|++..+.|+.++.++++.+
T Consensus 142 PDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLG-IaQPKGvlLygppgtGktLlaraVahht~c~firvsgselvqk 220 (404)
T KOG0728|consen 142 PDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALG-IAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQK 220 (404)
T ss_pred CccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcC-CCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHHHHH
Confidence 567899999999999999999999999999999999 5667999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHhhcCCeEEEeccchhhhhccCC--CchhHHHHHHHHHHHhhhcCccCCCCceEEEEEecCCCCC
Q 001707 805 WFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGG--AFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPFD 882 (1023)
Q Consensus 805 ~~ge~e~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~--~~~~e~~~ril~~LL~~Ldgl~~~~~~~VlVIaTTN~p~~ 882 (1023)
|.|+....++.+|..|+.++|+|||.||||++...|.. .+......+.+.+|+.++||+.. ..++-||.+||+.+.
T Consensus 221 ~igegsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfea--tknikvimatnridi 298 (404)
T KOG0728|consen 221 YIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEA--TKNIKVIMATNRIDI 298 (404)
T ss_pred HhhhhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhcccccc--ccceEEEEecccccc
Confidence 99999999999999999999999999999999877643 22233445566689999999965 457889999999999
Q ss_pred CcHHHHh--hcCCceeecCCCHHHHHHHHHHHHhccccCCccCHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001707 883 LDDAVIR--RLPRRIYVDLPDAENRMKILRIFLAHESLESGFQFNELANATEGYSGSDLKNLCIAAAYRPVQELLEEERK 960 (1023)
Q Consensus 883 Ld~aLlr--RFd~~I~V~lPd~eeR~~ILk~~L~~~~l~~dvdl~~LA~~TeGySgaDL~~L~~~Aa~~Airr~l~~e~~ 960 (1023)
||++++| |+++.|.||+|+.+.|.+||+.+-++.++...+++..+|+...|.||++++.+|.+|.+.|+|+ ++
T Consensus 299 ld~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kiaekm~gasgaevk~vcteagm~alre-----rr 373 (404)
T KOG0728|consen 299 LDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEKMPGASGAEVKGVCTEAGMYALRE-----RR 373 (404)
T ss_pred ccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCHHHHHHhCCCCccchhhhhhhhhhHHHHHH-----hh
Confidence 9999999 9999999999999999999999999999999999999999999999999999999999999985 22
Q ss_pred HHHhhCCCCCCCCcCCCCHHHHHHHHHhhCCCc
Q 001707 961 LFIQRGKNDAAPVLRPLKLEDFIQSKAKVGPSV 993 (1023)
Q Consensus 961 ~~~~~~~~~~~~~~r~Lt~eDF~~Al~kv~PSv 993 (1023)
..+|.+||.-|..++-..-
T Consensus 374 --------------vhvtqedfemav~kvm~k~ 392 (404)
T KOG0728|consen 374 --------------VHVTQEDFEMAVAKVMQKD 392 (404)
T ss_pred --------------ccccHHHHHHHHHHHHhcc
Confidence 3799999999998875443
No 19
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.4e-36 Score=313.77 Aligned_cols=247 Identities=33% Similarity=0.585 Sum_probs=226.9
Q ss_pred CCCCCCcccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccc
Q 001707 721 PPGEIGVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGST 800 (1023)
Q Consensus 721 ~~~e~~vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~elg~~fi~vs~se 800 (1023)
|...|.+++.||||++-+|+++++.+++|+.+.++|...| +.||+|||+|||||||||+||+|+|++..+.|+.+.+++
T Consensus 146 ~~ekpdvsy~diggld~qkqeireavelplt~~~ly~qig-idpprgvllygppg~gktml~kava~~t~a~firvvgse 224 (408)
T KOG0727|consen 146 PDEKPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIG-IDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSE 224 (408)
T ss_pred CCCCCCccccccccchhhHHHHHHHHhccchHHHHHHHhC-CCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHH
Confidence 3456789999999999999999999999999999999999 789999999999999999999999999999999999999
Q ss_pred cchhhhhhHHHHHHHHHHHHhhcCCeEEEeccchhhhhccCCCc--hhHHHHHHHHHHHhhhcCccCCCCceEEEEEecC
Q 001707 801 LTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAF--EHEATRRMRNEFMSAWDGLRSKESQKILILGATN 878 (1023)
Q Consensus 801 L~s~~~ge~e~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~--~~e~~~ril~~LL~~Ldgl~~~~~~~VlVIaTTN 878 (1023)
++.+|.|+....++.+|..|+.++|+||||||||.+..+|.... ......+++.+|+..|||+.. ..+|-||.+||
T Consensus 225 fvqkylgegprmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq--~~nvkvimatn 302 (408)
T KOG0727|consen 225 FVQKYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQ--TTNVKVIMATN 302 (408)
T ss_pred HHHHHhccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCc--ccceEEEEecC
Confidence 99999999999999999999999999999999999998876532 344567888899999999965 45788999999
Q ss_pred CCCCCcHHHHh--hcCCceeecCCCHHHHHHHHHHHHhccccCCccCHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHH
Q 001707 879 RPFDLDDAVIR--RLPRRIYVDLPDAENRMKILRIFLAHESLESGFQFNELANATEGYSGSDLKNLCIAAAYRPVQELLE 956 (1023)
Q Consensus 879 ~p~~Ld~aLlr--RFd~~I~V~lPd~eeR~~ILk~~L~~~~l~~dvdl~~LA~~TeGySgaDL~~L~~~Aa~~Airr~l~ 956 (1023)
+.+.|||+++| |+++.|.||+|+..++.-+|..+..+.++.+++|++.+..+.+..|++||..+|++|.+.|+|+.
T Consensus 303 radtldpallrpgrldrkiefplpdrrqkrlvf~titskm~ls~~vdle~~v~rpdkis~adi~aicqeagm~avr~n-- 380 (408)
T KOG0727|consen 303 RADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSDEVDLEDLVARPDKISGADINAICQEAGMLAVREN-- 380 (408)
T ss_pred cccccCHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCCcccCHHHHhcCccccchhhHHHHHHHHhHHHHHhc--
Confidence 99999999999 99999999999999999999999999999999999999999999999999999999999999862
Q ss_pred HHHHHHHhhCCCCCCCCcCCCCHHHHHHHHHhh
Q 001707 957 EERKLFIQRGKNDAAPVLRPLKLEDFIQSKAKV 989 (1023)
Q Consensus 957 ~e~~~~~~~~~~~~~~~~r~Lt~eDF~~Al~kv 989 (1023)
+ -.+...||.+|.+.+
T Consensus 381 --r---------------yvvl~kd~e~ay~~~ 396 (408)
T KOG0727|consen 381 --R---------------YVVLQKDFEKAYKTV 396 (408)
T ss_pred --c---------------eeeeHHHHHHHHHhh
Confidence 1 247788999997654
No 20
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-36 Score=324.26 Aligned_cols=244 Identities=36% Similarity=0.616 Sum_probs=224.2
Q ss_pred CCCcccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccch
Q 001707 724 EIGVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTS 803 (1023)
Q Consensus 724 e~~vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~elg~~fi~vs~seL~s 803 (1023)
.|..+|.||||++.+++++++.|++||.+|++|...| ++||+||+|||+||||||.||+|+|+...+.|+.+..++|+.
T Consensus 179 aP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemG-ikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQ 257 (440)
T KOG0726|consen 179 APQETYADIGGLESQIQEIKESVELPLTHPEYYEEMG-IKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQ 257 (440)
T ss_pred CchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcC-CCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHH
Confidence 4567999999999999999999999999999999999 799999999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHHhhcCCeEEEeccchhhhhccCCC--chhHHHHHHHHHHHhhhcCccCCCCceEEEEEecCCCC
Q 001707 804 KWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGA--FEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPF 881 (1023)
Q Consensus 804 ~~~ge~e~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~--~~~e~~~ril~~LL~~Ldgl~~~~~~~VlVIaTTN~p~ 881 (1023)
+|.|+..+.++++|..|..++|+|+||||||.+..+|..+ +......+.+.+||.++||+.+. ..|-||.+||+.+
T Consensus 258 kylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFdsr--gDvKvimATnrie 335 (440)
T KOG0726|consen 258 KYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSR--GDVKVIMATNRIE 335 (440)
T ss_pred HHhccchHHHHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCcccc--CCeEEEEeccccc
Confidence 9999999999999999999999999999999999877543 23334455556999999999764 4688999999999
Q ss_pred CCcHHHHh--hcCCceeecCCCHHHHHHHHHHHHhccccCCccCHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 001707 882 DLDDAVIR--RLPRRIYVDLPDAENRMKILRIFLAHESLESGFQFNELANATEGYSGSDLKNLCIAAAYRPVQELLEEER 959 (1023)
Q Consensus 882 ~Ld~aLlr--RFd~~I~V~lPd~eeR~~ILk~~L~~~~l~~dvdl~~LA~~TeGySgaDL~~L~~~Aa~~Airr~l~~e~ 959 (1023)
.|||+|+| |+++.|.|+.||...+..||..+.....+..+++++.+...-+.+||+||+++|.+|.+.|+|+- +
T Consensus 336 ~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mtl~~dVnle~li~~kddlSGAdIkAictEaGllAlRer----R 411 (440)
T KOG0726|consen 336 TLDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMTLAEDVNLEELIMTKDDLSGADIKAICTEAGLLALRER----R 411 (440)
T ss_pred ccCHhhcCCCccccccccCCCchhhhceeEEEeecccchhccccHHHHhhcccccccccHHHHHHHHhHHHHHHH----H
Confidence 99999999 99999999999999999999999999999999999999999999999999999999999999862 1
Q ss_pred HHHHhhCCCCCCCCcCCCCHHHHHHHHHhh
Q 001707 960 KLFIQRGKNDAAPVLRPLKLEDFIQSKAKV 989 (1023)
Q Consensus 960 ~~~~~~~~~~~~~~~r~Lt~eDF~~Al~kv 989 (1023)
..++++||.+|.++|
T Consensus 412 ---------------m~vt~~DF~ka~e~V 426 (440)
T KOG0726|consen 412 ---------------MKVTMEDFKKAKEKV 426 (440)
T ss_pred ---------------hhccHHHHHHHHHHH
Confidence 259999999999876
No 21
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.9e-36 Score=355.60 Aligned_cols=247 Identities=38% Similarity=0.655 Sum_probs=225.9
Q ss_pred CCCCcccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccc
Q 001707 723 GEIGVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLT 802 (1023)
Q Consensus 723 ~e~~vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~elg~~fi~vs~seL~ 802 (1023)
.+++++|.|+.|.+++|++|.|+|.. |++|+.|.+.| .+.|+|+||+||||||||.||+|+|.|+|+||+.+++++++
T Consensus 304 ~~t~V~FkDVAG~deAK~El~E~V~f-LKNP~~Y~~lG-AKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFv 381 (774)
T KOG0731|consen 304 GNTGVKFKDVAGVDEAKEELMEFVKF-LKNPEQYQELG-AKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFV 381 (774)
T ss_pred CCCCCccccccCcHHHHHHHHHHHHH-hcCHHHHHHcC-CcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHH
Confidence 45679999999999999999999876 99999999999 68899999999999999999999999999999999999999
Q ss_pred hhhhhhHHHHHHHHHHHHhhcCCeEEEeccchhhhhccCC---CchhHHHHHHHHHHHhhhcCccCCCCceEEEEEecCC
Q 001707 803 SKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGG---AFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNR 879 (1023)
Q Consensus 803 s~~~ge~e~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~---~~~~e~~~ril~~LL~~Ldgl~~~~~~~VlVIaTTN~ 879 (1023)
..+.|.....++.+|..|+..+||||||||||.+...|.+ ...+......+|+|+..|||.... ..|+|+|+||+
T Consensus 382 E~~~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~--~~vi~~a~tnr 459 (774)
T KOG0731|consen 382 EMFVGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETS--KGVIVLAATNR 459 (774)
T ss_pred HHhcccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCC--CcEEEEeccCC
Confidence 9999988999999999999999999999999999988842 234455677899999999999654 57999999999
Q ss_pred CCCCcHHHHh--hcCCceeecCCCHHHHHHHHHHHHhccccC-CccCHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHH
Q 001707 880 PFDLDDAVIR--RLPRRIYVDLPDAENRMKILRIFLAHESLE-SGFQFNELANATEGYSGSDLKNLCIAAAYRPVQELLE 956 (1023)
Q Consensus 880 p~~Ld~aLlr--RFd~~I~V~lPd~eeR~~ILk~~L~~~~l~-~dvdl~~LA~~TeGySgaDL~~L~~~Aa~~Airr~l~ 956 (1023)
++.||++++| ||++.|+++.|+...|.+||+.++.+..+. +++++..||.+|.||+|+||.++|++|+..|.|+.
T Consensus 460 ~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~neaa~~a~r~~-- 537 (774)
T KOG0731|consen 460 PDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLCNEAALLAARKG-- 537 (774)
T ss_pred ccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHHhhhhHHHHHHHHhc--
Confidence 9999999999 999999999999999999999999988885 78899999999999999999999999999999862
Q ss_pred HHHHHHHhhCCCCCCCCcCCCCHHHHHHHHHhhCCC
Q 001707 957 EERKLFIQRGKNDAAPVLRPLKLEDFIQSKAKVGPS 992 (1023)
Q Consensus 957 ~e~~~~~~~~~~~~~~~~r~Lt~eDF~~Al~kv~PS 992 (1023)
...|+..||..|++.+...
T Consensus 538 -----------------~~~i~~~~~~~a~~Rvi~G 556 (774)
T KOG0731|consen 538 -----------------LREIGTKDLEYAIERVIAG 556 (774)
T ss_pred -----------------cCccchhhHHHHHHHHhcc
Confidence 1469999999999965544
No 22
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=100.00 E-value=1.3e-35 Score=313.16 Aligned_cols=245 Identities=30% Similarity=0.462 Sum_probs=214.9
Q ss_pred CCcccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccchh
Q 001707 725 IGVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTSK 804 (1023)
Q Consensus 725 ~~vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~elg~~fi~vs~seL~s~ 804 (1023)
.+++|||++|+++.|...+-++. .|.+|+.|..+. |++||+|||||||||++|+|+|+++..||+.+.+.+|++.
T Consensus 116 ~~it~ddViGqEeAK~kcrli~~-yLenPe~Fg~WA----PknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGe 190 (368)
T COG1223 116 SDITLDDVIGQEEAKRKCRLIME-YLENPERFGDWA----PKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGE 190 (368)
T ss_pred ccccHhhhhchHHHHHHHHHHHH-HhhChHHhcccC----cceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHH
Confidence 35899999999999999876554 499999998764 5799999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHhhcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhcCccCCCCceEEEEEecCCCCCCc
Q 001707 805 WFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPFDLD 884 (1023)
Q Consensus 805 ~~ge~e~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~~~~~VlVIaTTN~p~~Ld 884 (1023)
++|+....|+.+|..|++.+|||+||||+|.+.-.|.-..-......+.|.||+.|||+. ++..|+.||+||+|+.||
T Consensus 191 hVGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~--eneGVvtIaaTN~p~~LD 268 (368)
T COG1223 191 HVGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIK--ENEGVVTIAATNRPELLD 268 (368)
T ss_pred HhhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcc--cCCceEEEeecCChhhcC
Confidence 999999999999999999999999999999997655322122334578899999999995 567899999999999999
Q ss_pred HHHHhhcCCceeecCCCHHHHHHHHHHHHhccccCCccCHHHHHHHccCCcHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 001707 885 DAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLESGFQFNELANATEGYSGSDLKN-LCIAAAYRPVQELLEEERKLFI 963 (1023)
Q Consensus 885 ~aLlrRFd~~I~V~lPd~eeR~~ILk~~L~~~~l~~dvdl~~LA~~TeGySgaDL~~-L~~~Aa~~Airr~l~~e~~~~~ 963 (1023)
+++++||...|.|.+|+.++|..|++.+++..++.-+.++..++..|.|+||+||+. ++..|.++|+.+- +
T Consensus 269 ~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~~~~~~~~t~g~SgRdikekvlK~aLh~Ai~ed----~---- 340 (368)
T COG1223 269 PAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVDADLRYLAAKTKGMSGRDIKEKVLKTALHRAIAED----R---- 340 (368)
T ss_pred HHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCccccCHHHHHHHhCCCCchhHHHHHHHHHHHHHHHhc----h----
Confidence 999999999999999999999999999999999999999999999999999999985 4566777777642 2
Q ss_pred hhCCCCCCCCcCCCCHHHHHHHHHhhCCCccc
Q 001707 964 QRGKNDAAPVLRPLKLEDFIQSKAKVGPSVAY 995 (1023)
Q Consensus 964 ~~~~~~~~~~~r~Lt~eDF~~Al~kv~PSvs~ 995 (1023)
..|+.+||..|+++.++....
T Consensus 341 -----------e~v~~edie~al~k~r~~r~~ 361 (368)
T COG1223 341 -----------EKVEREDIEKALKKERKRRAP 361 (368)
T ss_pred -----------hhhhHHHHHHHHHhhccccCC
Confidence 258889999999987665543
No 23
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=100.00 E-value=4.8e-35 Score=335.77 Aligned_cols=248 Identities=32% Similarity=0.558 Sum_probs=224.0
Q ss_pred CCCCcccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccc
Q 001707 723 GEIGVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLT 802 (1023)
Q Consensus 723 ~e~~vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~elg~~fi~vs~seL~ 802 (1023)
..|.++|+||||++.++++|++.+.+|+.+|+.|...| +.++++||||||||||||+||+++|++++.+|+.+.++++.
T Consensus 138 ~~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~G-l~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~ 216 (398)
T PTZ00454 138 EKPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIG-IDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFV 216 (398)
T ss_pred CCCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcC-CCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHH
Confidence 35679999999999999999999999999999999988 57889999999999999999999999999999999999999
Q ss_pred hhhhhhHHHHHHHHHHHHhhcCCeEEEeccchhhhhccCCCc--hhHHHHHHHHHHHhhhcCccCCCCceEEEEEecCCC
Q 001707 803 SKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAF--EHEATRRMRNEFMSAWDGLRSKESQKILILGATNRP 880 (1023)
Q Consensus 803 s~~~ge~e~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~--~~e~~~ril~~LL~~Ldgl~~~~~~~VlVIaTTN~p 880 (1023)
.+|.|+.+..++.+|..|+..+|+||||||||.++..+.... ......+++.+|+..++++.. ..+++||+|||++
T Consensus 217 ~k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~--~~~v~VI~aTN~~ 294 (398)
T PTZ00454 217 QKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQ--TTNVKVIMATNRA 294 (398)
T ss_pred HHhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCC--CCCEEEEEecCCc
Confidence 999999999999999999999999999999999987764321 233456778889999988744 3468999999999
Q ss_pred CCCcHHHHh--hcCCceeecCCCHHHHHHHHHHHHhccccCCccCHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHHHH
Q 001707 881 FDLDDAVIR--RLPRRIYVDLPDAENRMKILRIFLAHESLESGFQFNELANATEGYSGSDLKNLCIAAAYRPVQELLEEE 958 (1023)
Q Consensus 881 ~~Ld~aLlr--RFd~~I~V~lPd~eeR~~ILk~~L~~~~l~~dvdl~~LA~~TeGySgaDL~~L~~~Aa~~Airr~l~~e 958 (1023)
+.+|++++| ||++.|+|++|+.++|..||+.++.+..+..++++..+|..|+||||+||+++|++|++.|+++.
T Consensus 295 d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~~~la~~t~g~sgaDI~~l~~eA~~~A~r~~---- 370 (398)
T PTZ00454 295 DTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDLEDFVSRPEKISAADIAAICQEAGMQAVRKN---- 370 (398)
T ss_pred hhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcC----
Confidence 999999998 99999999999999999999999998888899999999999999999999999999999999751
Q ss_pred HHHHHhhCCCCCCCCcCCCCHHHHHHHHHhhCCC
Q 001707 959 RKLFIQRGKNDAAPVLRPLKLEDFIQSKAKVGPS 992 (1023)
Q Consensus 959 ~~~~~~~~~~~~~~~~r~Lt~eDF~~Al~kv~PS 992 (1023)
...|+++||.+|++++...
T Consensus 371 ---------------~~~i~~~df~~A~~~v~~~ 389 (398)
T PTZ00454 371 ---------------RYVILPKDFEKGYKTVVRK 389 (398)
T ss_pred ---------------CCccCHHHHHHHHHHHHhc
Confidence 1369999999999988544
No 24
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=100.00 E-value=4.6e-34 Score=327.66 Aligned_cols=252 Identities=39% Similarity=0.650 Sum_probs=225.1
Q ss_pred CCCCcccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccc
Q 001707 723 GEIGVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLT 802 (1023)
Q Consensus 723 ~e~~vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~elg~~fi~vs~seL~ 802 (1023)
..+.++|+||+|++++++.|.+.+.+|+.+++.|...| +.++++||||||||||||++|+++|++++.+|+.++++++.
T Consensus 124 ~~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g-~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~ 202 (389)
T PRK03992 124 ESPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVG-IEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELV 202 (389)
T ss_pred CCCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcC-CCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHh
Confidence 34678999999999999999999999999999999888 67889999999999999999999999999999999999999
Q ss_pred hhhhhhHHHHHHHHHHHHhhcCCeEEEeccchhhhhccCCCc--hhHHHHHHHHHHHhhhcCccCCCCceEEEEEecCCC
Q 001707 803 SKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAF--EHEATRRMRNEFMSAWDGLRSKESQKILILGATNRP 880 (1023)
Q Consensus 803 s~~~ge~e~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~--~~e~~~ril~~LL~~Ldgl~~~~~~~VlVIaTTN~p 880 (1023)
..|.|+.+..++.+|..|+...|+||||||||.++..+.+.. ......+.+..++..++++.. ..++.||+|||.+
T Consensus 203 ~~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~--~~~v~VI~aTn~~ 280 (389)
T PRK03992 203 QKFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDP--RGNVKIIAATNRI 280 (389)
T ss_pred HhhccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCC--CCCEEEEEecCCh
Confidence 999999999999999999999999999999999987765322 122345566678888887643 3479999999999
Q ss_pred CCCcHHHHh--hcCCceeecCCCHHHHHHHHHHHHhccccCCccCHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHHHH
Q 001707 881 FDLDDAVIR--RLPRRIYVDLPDAENRMKILRIFLAHESLESGFQFNELANATEGYSGSDLKNLCIAAAYRPVQELLEEE 958 (1023)
Q Consensus 881 ~~Ld~aLlr--RFd~~I~V~lPd~eeR~~ILk~~L~~~~l~~dvdl~~LA~~TeGySgaDL~~L~~~Aa~~Airr~l~~e 958 (1023)
+.+|++++| ||+..|.|++|+.++|.+||+.++....+..++++..||..|+||+|+||.++|.+|++.|+++.
T Consensus 281 ~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~~~la~~t~g~sgadl~~l~~eA~~~a~~~~---- 356 (389)
T PRK03992 281 DILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDLEELAELTEGASGADLKAICTEAGMFAIRDD---- 356 (389)
T ss_pred hhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcC----
Confidence 999999998 99999999999999999999999998888888999999999999999999999999999998751
Q ss_pred HHHHHhhCCCCCCCCcCCCCHHHHHHHHHhhCCCcccc
Q 001707 959 RKLFIQRGKNDAAPVLRPLKLEDFIQSKAKVGPSVAYD 996 (1023)
Q Consensus 959 ~~~~~~~~~~~~~~~~r~Lt~eDF~~Al~kv~PSvs~d 996 (1023)
...|+++||.+|+++++++...+
T Consensus 357 ---------------~~~i~~~d~~~A~~~~~~~~~~~ 379 (389)
T PRK03992 357 ---------------RTEVTMEDFLKAIEKVMGKEEKD 379 (389)
T ss_pred ---------------CCCcCHHHHHHHHHHHhcccccc
Confidence 13699999999999999876554
No 25
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.7e-35 Score=307.10 Aligned_cols=248 Identities=34% Similarity=0.586 Sum_probs=225.4
Q ss_pred CCCCcccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccc
Q 001707 723 GEIGVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLT 802 (1023)
Q Consensus 723 ~e~~vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~elg~~fi~vs~seL~ 802 (1023)
..|.+++.|+||..++++.|++.|+.|+.+|+.|.+.| +.||+|||||||||||||.+|+|+|+..++.|+.+-.++|+
T Consensus 170 ekpdvty~dvggckeqieklrevve~pll~perfv~lg-idppkgvllygppgtgktl~aravanrtdacfirvigselv 248 (435)
T KOG0729|consen 170 EKPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLG-IDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELV 248 (435)
T ss_pred cCCCcccccccchHHHHHHHHHHHhccccCHHHHhhcC-CCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHHH
Confidence 35789999999999999999999999999999999999 79999999999999999999999999999999999999999
Q ss_pred hhhhhhHHHHHHHHHHHHhhcCCeEEEeccchhhhhccCCC--chhHHHHHHHHHHHhhhcCccCCCCceEEEEEecCCC
Q 001707 803 SKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGA--FEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRP 880 (1023)
Q Consensus 803 s~~~ge~e~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~--~~~e~~~ril~~LL~~Ldgl~~~~~~~VlVIaTTN~p 880 (1023)
.+|+|+....++.+|.+|+..+.||||+||||.+.+.|... +......+.+.+++.+|||+.+. .++-|+.+||+|
T Consensus 249 qkyvgegarmvrelf~martkkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdpr--gnikvlmatnrp 326 (435)
T KOG0729|consen 249 QKYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPR--GNIKVLMATNRP 326 (435)
T ss_pred HHHhhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCCC--CCeEEEeecCCC
Confidence 99999999999999999999999999999999999887643 23333445566899999999654 568899999999
Q ss_pred CCCcHHHHh--hcCCceeecCCCHHHHHHHHHHHHhccccCCccCHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHHHH
Q 001707 881 FDLDDAVIR--RLPRRIYVDLPDAENRMKILRIFLAHESLESGFQFNELANATEGYSGSDLKNLCIAAAYRPVQELLEEE 958 (1023)
Q Consensus 881 ~~Ld~aLlr--RFd~~I~V~lPd~eeR~~ILk~~L~~~~l~~dvdl~~LA~~TeGySgaDL~~L~~~Aa~~Airr~l~~e 958 (1023)
+.||++|+| |+++.+.|.+|+.+.|..||+.+.+...+..++-|+-||..+..-||++|+.+|.+|.+.|++. .
T Consensus 327 dtldpallrpgrldrkvef~lpdlegrt~i~kihaksmsverdir~ellarlcpnstgaeirsvcteagmfaira----r 402 (435)
T KOG0729|consen 327 DTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRA----R 402 (435)
T ss_pred CCcCHhhcCCcccccceeccCCcccccceeEEEeccccccccchhHHHHHhhCCCCcchHHHHHHHHhhHHHHHH----H
Confidence 999999999 9999999999999999999999999999999999999999999999999999999999999974 1
Q ss_pred HHHHHhhCCCCCCCCcCCCCHHHHHHHHHhhCCC
Q 001707 959 RKLFIQRGKNDAAPVLRPLKLEDFIQSKAKVGPS 992 (1023)
Q Consensus 959 ~~~~~~~~~~~~~~~~r~Lt~eDF~~Al~kv~PS 992 (1023)
+ +..|..||..|++++-..
T Consensus 403 r---------------k~atekdfl~av~kvvkg 421 (435)
T KOG0729|consen 403 R---------------KVATEKDFLDAVNKVVKG 421 (435)
T ss_pred h---------------hhhhHHHHHHHHHHHHHH
Confidence 2 247788999999987543
No 26
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=100.00 E-value=4.4e-33 Score=322.01 Aligned_cols=246 Identities=36% Similarity=0.579 Sum_probs=220.6
Q ss_pred CCCcccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccch
Q 001707 724 EIGVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTS 803 (1023)
Q Consensus 724 e~~vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~elg~~fi~vs~seL~s 803 (1023)
.+.++|+||+|++.+++.|.+++.+|+.+|+.|...+ +.++++||||||||||||++|+++|++++.+|+.+..+++.+
T Consensus 177 ~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~g-i~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~~ 255 (438)
T PTZ00361 177 APLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIG-IKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQ 255 (438)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcC-CCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhhh
Confidence 4668999999999999999999999999999999988 578899999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHHhhcCCeEEEeccchhhhhccCCC--chhHHHHHHHHHHHhhhcCccCCCCceEEEEEecCCCC
Q 001707 804 KWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGA--FEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPF 881 (1023)
Q Consensus 804 ~~~ge~e~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~--~~~e~~~ril~~LL~~Ldgl~~~~~~~VlVIaTTN~p~ 881 (1023)
.|.|+.+..++.+|..|....|+||||||||.++..+... .......+.+.+|+..++++.. ...+.||+|||+++
T Consensus 256 k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~--~~~V~VI~ATNr~d 333 (438)
T PTZ00361 256 KYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDS--RGDVKVIMATNRIE 333 (438)
T ss_pred hhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcc--cCCeEEEEecCChH
Confidence 9999999999999999999999999999999998766432 1223344566788888888743 34689999999999
Q ss_pred CCcHHHHh--hcCCceeecCCCHHHHHHHHHHHHhccccCCccCHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 001707 882 DLDDAVIR--RLPRRIYVDLPDAENRMKILRIFLAHESLESGFQFNELANATEGYSGSDLKNLCIAAAYRPVQELLEEER 959 (1023)
Q Consensus 882 ~Ld~aLlr--RFd~~I~V~lPd~eeR~~ILk~~L~~~~l~~dvdl~~LA~~TeGySgaDL~~L~~~Aa~~Airr~l~~e~ 959 (1023)
.||++++| ||++.|.|++|+.++|.+||+.++.+..+..++++..++..++||||+||+++|.+|++.|+++.
T Consensus 334 ~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl~~la~~t~g~sgAdI~~i~~eA~~~Alr~~----- 408 (438)
T PTZ00361 334 SLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDLEEFIMAKDELSGADIKAICTEAGLLALRER----- 408 (438)
T ss_pred HhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhc-----
Confidence 99999997 99999999999999999999999998888889999999999999999999999999999999852
Q ss_pred HHHHhhCCCCCCCCcCCCCHHHHHHHHHhhCC
Q 001707 960 KLFIQRGKNDAAPVLRPLKLEDFIQSKAKVGP 991 (1023)
Q Consensus 960 ~~~~~~~~~~~~~~~r~Lt~eDF~~Al~kv~P 991 (1023)
...|+++||.+|+.++..
T Consensus 409 --------------r~~Vt~~D~~~A~~~v~~ 426 (438)
T PTZ00361 409 --------------RMKVTQADFRKAKEKVLY 426 (438)
T ss_pred --------------CCccCHHHHHHHHHHHHh
Confidence 136999999999998743
No 27
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=100.00 E-value=7.2e-33 Score=326.90 Aligned_cols=269 Identities=34% Similarity=0.549 Sum_probs=232.2
Q ss_pred CCCCcccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccc
Q 001707 723 GEIGVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLT 802 (1023)
Q Consensus 723 ~e~~vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~elg~~fi~vs~seL~ 802 (1023)
..+.++|+||+|++.+++++.+++.. +.+++.|...+ ..+++++|||||||||||++|+++|.+++.+|+.++++++.
T Consensus 48 ~~~~~~~~di~g~~~~k~~l~~~~~~-l~~~~~~~~~g-~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~ 125 (495)
T TIGR01241 48 EKPKVTFKDVAGIDEAKEELMEIVDF-LKNPSKFTKLG-AKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFV 125 (495)
T ss_pred CCCCCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHhcC-CCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHH
Confidence 45789999999999999999998876 88899898877 57788999999999999999999999999999999999999
Q ss_pred hhhhhhHHHHHHHHHHHHhhcCCeEEEeccchhhhhccCCC--chhHHHHHHHHHHHhhhcCccCCCCceEEEEEecCCC
Q 001707 803 SKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGA--FEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRP 880 (1023)
Q Consensus 803 s~~~ge~e~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~--~~~e~~~ril~~LL~~Ldgl~~~~~~~VlVIaTTN~p 880 (1023)
..+.+..++.++.+|..|+..+|+||||||||.+...+... .......+++++|+..|+++.. ..+++||+|||.+
T Consensus 126 ~~~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~--~~~v~vI~aTn~~ 203 (495)
T TIGR01241 126 EMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGT--NTGVIVIAATNRP 203 (495)
T ss_pred HHHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccC--CCCeEEEEecCCh
Confidence 99999999999999999999999999999999998776542 1234456788999999998854 3569999999999
Q ss_pred CCCcHHHHh--hcCCceeecCCCHHHHHHHHHHHHhccccCCccCHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHHHH
Q 001707 881 FDLDDAVIR--RLPRRIYVDLPDAENRMKILRIFLAHESLESGFQFNELANATEGYSGSDLKNLCIAAAYRPVQELLEEE 958 (1023)
Q Consensus 881 ~~Ld~aLlr--RFd~~I~V~lPd~eeR~~ILk~~L~~~~l~~dvdl~~LA~~TeGySgaDL~~L~~~Aa~~Airr~l~~e 958 (1023)
+.||++++| ||++.|++++|+.++|.+||+.++....+..++++..+|..|.||+++||.++|++|+..|.++.
T Consensus 204 ~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~~~l~~la~~t~G~sgadl~~l~~eA~~~a~~~~---- 279 (495)
T TIGR01241 204 DVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPDVDLKAVARRTPGFSGADLANLLNEAALLAARKN---- 279 (495)
T ss_pred hhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcchhHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcC----
Confidence 999999998 99999999999999999999999988777778899999999999999999999999988876531
Q ss_pred HHHHHhhCCCCCCCCcCCCCHHHHHHHHHhhCCCcccchhhHHHHHHHHHHhCCCC
Q 001707 959 RKLFIQRGKNDAAPVLRPLKLEDFIQSKAKVGPSVAYDAASMNELRKWNEQYGEGG 1014 (1023)
Q Consensus 959 ~~~~~~~~~~~~~~~~r~Lt~eDF~~Al~kv~PSvs~d~~~m~el~kW~d~yG~~g 1014 (1023)
..+|+++||..|+.++..........+++..+|.-.|-+.|
T Consensus 280 ---------------~~~i~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~A~hEaG 320 (495)
T TIGR01241 280 ---------------KTEITMNDIEEAIDRVIAGPEKKSRVISEKEKKLVAYHEAG 320 (495)
T ss_pred ---------------CCCCCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHh
Confidence 14799999999999887654444444555566666665544
No 28
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.6e-33 Score=328.29 Aligned_cols=245 Identities=35% Similarity=0.594 Sum_probs=225.5
Q ss_pred CCCcccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccch
Q 001707 724 EIGVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTS 803 (1023)
Q Consensus 724 e~~vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~elg~~fi~vs~seL~s 803 (1023)
...++|.|+.|.++.|++|.+.|.. ++.|..|...|. +-|+||||+||||||||.||+|+|.+.++||+.++.++++.
T Consensus 144 ~~~v~F~DVAG~dEakeel~EiVdf-Lk~p~ky~~lGa-kiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVe 221 (596)
T COG0465 144 QVKVTFADVAGVDEAKEELSELVDF-LKNPKKYQALGA-KIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVE 221 (596)
T ss_pred ccCcChhhhcCcHHHHHHHHHHHHH-HhCchhhHhccc-ccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhh
Confidence 4679999999999999999999866 899999999885 77899999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHHhhcCCeEEEeccchhhhhccCCC--chhHHHHHHHHHHHhhhcCccCCCCceEEEEEecCCCC
Q 001707 804 KWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGA--FEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPF 881 (1023)
Q Consensus 804 ~~~ge~e~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~--~~~e~~~ril~~LL~~Ldgl~~~~~~~VlVIaTTN~p~ 881 (1023)
.++|-....++.+|..|++++||||||||||.+...|+.. +.+..-.+.+|+++..|||.. .+..|+||++||+|+
T Consensus 222 mfVGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~--~~~gviviaaTNRpd 299 (596)
T COG0465 222 MFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFG--GNEGVIVIAATNRPD 299 (596)
T ss_pred hhcCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCC--CCCceEEEecCCCcc
Confidence 9999999999999999999999999999999999887532 345556678999999999996 456799999999999
Q ss_pred CCcHHHHh--hcCCceeecCCCHHHHHHHHHHHHhccccCCccCHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 001707 882 DLDDAVIR--RLPRRIYVDLPDAENRMKILRIFLAHESLESGFQFNELANATEGYSGSDLKNLCIAAAYRPVQELLEEER 959 (1023)
Q Consensus 882 ~Ld~aLlr--RFd~~I~V~lPd~eeR~~ILk~~L~~~~l~~dvdl~~LA~~TeGySgaDL~~L~~~Aa~~Airr~l~~e~ 959 (1023)
.||++|+| ||++.|.++.||...|++|++.++++..+..++|+..+|+.|.||+|+||.+++++|+..|.++.
T Consensus 300 VlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl~~iAr~tpGfsGAdL~nl~NEAal~aar~n----- 374 (596)
T COG0465 300 VLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDLKKIARGTPGFSGADLANLLNEAALLAARRN----- 374 (596)
T ss_pred cchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCHHHHhhhCCCcccchHhhhHHHHHHHHHHhc-----
Confidence 99999999 99999999999999999999999999999999999999999999999999999999999999862
Q ss_pred HHHHhhCCCCCCCCcCCCCHHHHHHHHHhhCC
Q 001707 960 KLFIQRGKNDAAPVLRPLKLEDFIQSKAKVGP 991 (1023)
Q Consensus 960 ~~~~~~~~~~~~~~~r~Lt~eDF~~Al~kv~P 991 (1023)
...+++.||.+|+.++-.
T Consensus 375 --------------~~~i~~~~i~ea~drv~~ 392 (596)
T COG0465 375 --------------KKEITMRDIEEAIDRVIA 392 (596)
T ss_pred --------------CeeEeccchHHHHHHHhc
Confidence 136999999999988754
No 29
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.8e-33 Score=320.99 Aligned_cols=259 Identities=37% Similarity=0.621 Sum_probs=236.8
Q ss_pred CcccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccchhh
Q 001707 726 GVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTSKW 805 (1023)
Q Consensus 726 ~vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~elg~~fi~vs~seL~s~~ 805 (1023)
.++ +++||+......+++.+.+|+..+..|...| ..+++++|+|||||||||++++|+|++.++.++.++++++++++
T Consensus 181 ~~~-~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g-~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~ 258 (693)
T KOG0730|consen 181 EVG-DDIGGLKRQLSVIRELVELPLRHPALFKSIG-IKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKF 258 (693)
T ss_pred ccc-cccchhHHHHHHHHHHHHhhhcchhhhhhcC-CCCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhc
Confidence 456 8999999999999999999999999999888 68999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhhcC-CeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhcCccCCCCceEEEEEecCCCCCCc
Q 001707 806 FGDAEKLTKALFSFASKLA-PVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPFDLD 884 (1023)
Q Consensus 806 ~ge~e~~I~~lF~~A~k~~-PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~~~~~VlVIaTTN~p~~Ld 884 (1023)
.|++++.++.+|..|.+++ |+||||||+|.+++++..... +..++..+++.++|++. ...+++||++||+|..||
T Consensus 259 ~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~--~e~Rv~sqlltL~dg~~--~~~~vivl~atnrp~sld 334 (693)
T KOG0730|consen 259 PGETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGADD--VESRVVSQLLTLLDGLK--PDAKVIVLAATNRPDSLD 334 (693)
T ss_pred ccchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccch--HHHHHHHHHHHHHhhCc--CcCcEEEEEecCCccccC
Confidence 9999999999999999999 999999999999999876543 78899999999999985 346899999999999999
Q ss_pred HHHHh-hcCCceeecCCCHHHHHHHHHHHHhccccCCccCHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001707 885 DAVIR-RLPRRIYVDLPDAENRMKILRIFLAHESLESGFQFNELANATEGYSGSDLKNLCIAAAYRPVQELLEEERKLFI 963 (1023)
Q Consensus 885 ~aLlr-RFd~~I~V~lPd~eeR~~ILk~~L~~~~l~~dvdl~~LA~~TeGySgaDL~~L~~~Aa~~Airr~l~~e~~~~~ 963 (1023)
++++| ||++.+.+..|+..+|.+|++.+++..+..++.++..+|..|.||+|+||..+|.+|++.++++
T Consensus 335 ~alRRgRfd~ev~IgiP~~~~RldIl~~l~k~~~~~~~~~l~~iA~~thGyvGaDL~~l~~ea~~~~~r~---------- 404 (693)
T KOG0730|consen 335 PALRRGRFDREVEIGIPGSDGRLDILRVLTKKMNLLSDVDLEDIAVSTHGYVGADLAALCREASLQATRR---------- 404 (693)
T ss_pred hhhhcCCCcceeeecCCCchhHHHHHHHHHHhcCCcchhhHHHHHHHccchhHHHHHHHHHHHHHHHhhh----------
Confidence 99998 9999999999999999999999999999888899999999999999999999999999999885
Q ss_pred hhCCCCCCCCcCCCCHHHHHHHHHhhCCCcccchhhHHHHHHHHHHhCCCC
Q 001707 964 QRGKNDAAPVLRPLKLEDFIQSKAKVGPSVAYDAASMNELRKWNEQYGEGG 1014 (1023)
Q Consensus 964 ~~~~~~~~~~~r~Lt~eDF~~Al~kv~PSvs~d~~~m~el~kW~d~yG~~g 1014 (1023)
++++|..|+..++||...+...-..-..|+|++|...
T Consensus 405 --------------~~~~~~~A~~~i~psa~Re~~ve~p~v~W~dIGGlE~ 441 (693)
T KOG0730|consen 405 --------------TLEIFQEALMGIRPSALREILVEMPNVSWDDIGGLEE 441 (693)
T ss_pred --------------hHHHHHHHHhcCCchhhhheeccCCCCChhhccCHHH
Confidence 5788999999999987765543333458888888654
No 30
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=2.8e-32 Score=299.54 Aligned_cols=246 Identities=18% Similarity=0.257 Sum_probs=195.2
Q ss_pred CcccccccccccccchhhHHHHHHhhhccccCccchhhccccccCCCCceeeccCCChhHHHHHHHHHHHhhcCCcEEEe
Q 001707 175 EKINISWDTFPYYINENTKSLLVECVGSHLKHKKFTATFGARLTSSSGRILLRSVPGTELYRERLIRALARELQVPLLVL 254 (1023)
Q Consensus 175 ~~~~vsf~~fpyylse~tk~~L~~~~~~hl~~~~~~~~~~~~l~~~~~~iLL~~~~gsE~y~e~L~kAlA~~~~a~ll~~ 254 (1023)
+.-+|||++++.+ +...+-|.+++-.+|+|+|+|.+-+ + .+.++|||+|||| +++++||||.|++-+|.||=+
T Consensus 144 e~PdvtY~dIGGL--~~Qi~EirE~VELPL~~PElF~~~G--I-~PPKGVLLYGPPG--TGKTLLAkAVA~~T~AtFIrv 216 (406)
T COG1222 144 EKPDVTYEDIGGL--DEQIQEIREVVELPLKNPELFEELG--I-DPPKGVLLYGPPG--TGKTLLAKAVANQTDATFIRV 216 (406)
T ss_pred cCCCCChhhccCH--HHHHHHHHHHhcccccCHHHHHHcC--C-CCCCceEeeCCCC--CcHHHHHHHHHhccCceEEEe
Confidence 4568999999999 9999999999999999999863222 2 3678899999999 899999999999999999876
Q ss_pred ecCCCCCCCCCCCCCCccCCCcccccccccccccccCcchhhccccccccCCCCchHHHHHHHHHHHhhccCcchHHHhh
Q 001707 255 DSSVLAPYDFADDSSDCESDNYEETSESEVEDENDASNEEEWTSSNEARTDGSDSEADMQATAEAALKKLVPFNLEELEK 334 (1023)
Q Consensus 255 ds~~l~~~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~k~~~s~~~~~~~~~~~~~~~~~~p~~~~~~~~ 334 (1023)
=.| |-++
T Consensus 217 vgS------------------------------------------------------------------------ElVq- 223 (406)
T COG1222 217 VGS------------------------------------------------------------------------ELVQ- 223 (406)
T ss_pred ccH------------------------------------------------------------------------HHHH-
Confidence 542 1011
Q ss_pred hhcccccCCccccccccCCCCccccccccCCCeEEEeCCCcccccccceeeeccccCCCCCCCcccccCCCCCCCCcccE
Q 001707 335 KLSGELDSSSESSKSEAAEPSDTSKRLLKKGDRVKYIGPSVRVEADNRIILGKIMTSDGPKNAYTIIPDRALSSGQRGEV 414 (1023)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gdrvk~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~g~v 414 (1023)
||+|...
T Consensus 224 ----------------------------------KYiGEGa--------------------------------------- 230 (406)
T COG1222 224 ----------------------------------KYIGEGA--------------------------------------- 230 (406)
T ss_pred ----------------------------------HHhccch---------------------------------------
Confidence 4444322
Q ss_pred EeecCCcceeeeccccCCCCCCCCCCcccCCCCCCCcccccccccccccccchhhhHHHHHHHHHHHhhcCCeEEEEcCc
Q 001707 415 YEVNGDRAAVILDISADNKGEGEKDDKVAEQPARPPVYWIDVKHIEHDLDTQAEDCYIAMEALCEVLHSTQPLIVYFPDS 494 (1023)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~e~~~~~~p~Iiff~di 494 (1023)
-+|..||+.|+...|+|||||||
T Consensus 231 ---------------------------------------------------------RlVRelF~lArekaPsIIFiDEI 253 (406)
T COG1222 231 ---------------------------------------------------------RLVRELFELAREKAPSIIFIDEI 253 (406)
T ss_pred ---------------------------------------------------------HHHHHHHHHHhhcCCeEEEEech
Confidence 28999999999999999999999
Q ss_pred hhh----hhhccCCccHHHHHHHHHHHHhcCCCCEEEEecccCCCCCccccccccccccccccccCCCCcchhhhccccc
Q 001707 495 SLW----LSRAVPRCNRKEFVRKVEEMFDQLSGPVVLICGQNKNETGPKEKEKFTMILPNFGRLAKLPLPLQRLTEGLKA 570 (1023)
Q Consensus 495 ~~~----~~~s~~~~~~~~~~s~l~~~~~~~~g~v~vI~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~LvIGmTN 570 (1023)
|-+ +..+ -+--.+.-.|+.+||..||| |+.+.++=||.+||
T Consensus 254 DAIg~kR~d~~--t~gDrEVQRTmleLL~qlDG---------------------------------FD~~~nvKVI~ATN 298 (406)
T COG1222 254 DAIGAKRFDSG--TSGDREVQRTMLELLNQLDG---------------------------------FDPRGNVKVIMATN 298 (406)
T ss_pred hhhhcccccCC--CCchHHHHHHHHHHHHhccC---------------------------------CCCCCCeEEEEecC
Confidence 986 2222 22234666677777777773 22333445678999
Q ss_pred CCCcchHHHHh--ccccEEEEcCCChHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhccCCcccccccccchhhhhhh
Q 001707 571 TKRSDDNEIYN--LFTNVLSIHPPKEEDLLRTFNKQVEEDRRIVIYRSNLNELHKVLEDHELSCTDLLHVNTDGVILTKQ 648 (1023)
Q Consensus 571 R~d~iDeaL~r--rFe~~ieI~LPdee~Rl~Il~Iht~~~~~~~~~~~~v~~l~~~l~t~~~~gaDL~~Lc~~a~~ls~~ 648 (1023)
|+|.+||||+| |||+.|||||||++||++||+||+.+|. ...+.|++.|+. .+.|++||||.++||+|-.++.
T Consensus 299 R~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~--l~~dvd~e~la~--~~~g~sGAdlkaictEAGm~Ai- 373 (406)
T COG1222 299 RPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMN--LADDVDLELLAR--LTEGFSGADLKAICTEAGMFAI- 373 (406)
T ss_pred CccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhcc--CccCcCHHHHHH--hcCCCchHHHHHHHHHHhHHHH-
Confidence 99999999999 9999999999999999999999988775 223455667766 8889999999999999877652
Q ss_pred hhhhhHhhcccccccccCCCCccCCceeeCHHHHHHHHHHhhhh
Q 001707 649 RAEKVVGWAKNHYLSSCSFPSVKGQRLHLPRESLEIAILRLKEQ 692 (1023)
Q Consensus 649 ~~~~~V~~A~~~~l~~~~~~~v~~~kv~V~~~df~~Al~~l~p~ 692 (1023)
...+..|+++||+.|++++...
T Consensus 374 ----------------------R~~R~~Vt~~DF~~Av~KV~~~ 395 (406)
T COG1222 374 ----------------------RERRDEVTMEDFLKAVEKVVKK 395 (406)
T ss_pred ----------------------HhccCeecHHHHHHHHHHHHhc
Confidence 3456779999999999998763
No 31
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.98 E-value=3.5e-31 Score=301.22 Aligned_cols=245 Identities=39% Similarity=0.673 Sum_probs=216.7
Q ss_pred CCCCcccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccc
Q 001707 723 GEIGVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLT 802 (1023)
Q Consensus 723 ~e~~vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~elg~~fi~vs~seL~ 802 (1023)
..+.++|+||+|++++++.|++++..|+.+++.|...| +.++++||||||||||||++|+++|++++.+|+.+.+.++.
T Consensus 115 ~~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g-~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~ 193 (364)
T TIGR01242 115 ERPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVG-IEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELV 193 (364)
T ss_pred cCCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcC-CCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHH
Confidence 34678999999999999999999999999999999888 57889999999999999999999999999999999999999
Q ss_pred hhhhhhHHHHHHHHHHHHhhcCCeEEEeccchhhhhccCCCc--hhHHHHHHHHHHHhhhcCccCCCCceEEEEEecCCC
Q 001707 803 SKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAF--EHEATRRMRNEFMSAWDGLRSKESQKILILGATNRP 880 (1023)
Q Consensus 803 s~~~ge~e~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~--~~e~~~ril~~LL~~Ldgl~~~~~~~VlVIaTTN~p 880 (1023)
..+.++....++.+|..++...|+||||||+|.+...+.+.. ......+.+..++..++++.. ..++.||+|||.+
T Consensus 194 ~~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~--~~~v~vI~ttn~~ 271 (364)
T TIGR01242 194 RKYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDP--RGNVKVIAATNRP 271 (364)
T ss_pred HHhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCC--CCCEEEEEecCCh
Confidence 999999999999999999999999999999999987654322 122334556677777777643 3479999999999
Q ss_pred CCCcHHHHh--hcCCceeecCCCHHHHHHHHHHHHhccccCCccCHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHHHH
Q 001707 881 FDLDDAVIR--RLPRRIYVDLPDAENRMKILRIFLAHESLESGFQFNELANATEGYSGSDLKNLCIAAAYRPVQELLEEE 958 (1023)
Q Consensus 881 ~~Ld~aLlr--RFd~~I~V~lPd~eeR~~ILk~~L~~~~l~~dvdl~~LA~~TeGySgaDL~~L~~~Aa~~Airr~l~~e 958 (1023)
+.+|+++++ ||++.|.|+.|+.++|.+||+.++....+..++++..|+..++||+|+||.++|.+|++.|+++.
T Consensus 272 ~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~~~~la~~t~g~sg~dl~~l~~~A~~~a~~~~---- 347 (364)
T TIGR01242 272 DILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDLEAIAKMTEGASGADLKAICTEAGMFAIREE---- 347 (364)
T ss_pred hhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhC----
Confidence 999999998 99999999999999999999999988877778999999999999999999999999999998751
Q ss_pred HHHHHhhCCCCCCCCcCCCCHHHHHHHHHhh
Q 001707 959 RKLFIQRGKNDAAPVLRPLKLEDFIQSKAKV 989 (1023)
Q Consensus 959 ~~~~~~~~~~~~~~~~r~Lt~eDF~~Al~kv 989 (1023)
...|+.+||.+|+.++
T Consensus 348 ---------------~~~i~~~d~~~a~~~~ 363 (364)
T TIGR01242 348 ---------------RDYVTMDDFIKAVEKV 363 (364)
T ss_pred ---------------CCccCHHHHHHHHHHh
Confidence 1369999999999875
No 32
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=5.4e-32 Score=291.93 Aligned_cols=243 Identities=34% Similarity=0.653 Sum_probs=218.3
Q ss_pred CcccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccchhh
Q 001707 726 GVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTSKW 805 (1023)
Q Consensus 726 ~vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~elg~~fi~vs~seL~s~~ 805 (1023)
+++|+.++|+..+..++++.+..|+.+|++|.+.| ++||++++||||||+|||.+|++||..+|++|+.+.++.+.+++
T Consensus 128 ~~s~~~~ggl~~qirelre~ielpl~np~lf~rvg-Ik~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~ky 206 (388)
T KOG0651|consen 128 NISFENVGGLFYQIRELREVIELPLTNPELFLRVG-IKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKY 206 (388)
T ss_pred ccCHHHhCChHHHHHHHHhheEeeccCchhccccC-CCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhhh
Confidence 57999999999999999999999999999999988 79999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhhcCCeEEEeccchhhhhccCCC--chhHHHHHHHHHHHhhhcCccCCCCceEEEEEecCCCCCC
Q 001707 806 FGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGA--FEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPFDL 883 (1023)
Q Consensus 806 ~ge~e~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~--~~~e~~~ril~~LL~~Ldgl~~~~~~~VlVIaTTN~p~~L 883 (1023)
.|++...|+..|..|+.+.|||||+||||.+.+.+... .......+.+.+|+..|++... ..+|-+|+|||+|+.|
T Consensus 207 iGEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~--l~rVk~ImatNrpdtL 284 (388)
T KOG0651|consen 207 IGESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDT--LHRVKTIMATNRPDTL 284 (388)
T ss_pred cccHHHHHHHHHHHHhhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchh--cccccEEEecCCcccc
Confidence 99999999999999999999999999999999887432 2233445556677777877743 4689999999999999
Q ss_pred cHHHHh--hcCCceeecCCCHHHHHHHHHHHHhccccCCccCHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001707 884 DDAVIR--RLPRRIYVDLPDAENRMKILRIFLAHESLESGFQFNELANATEGYSGSDLKNLCIAAAYRPVQELLEEERKL 961 (1023)
Q Consensus 884 d~aLlr--RFd~~I~V~lPd~eeR~~ILk~~L~~~~l~~dvdl~~LA~~TeGySgaDL~~L~~~Aa~~Airr~l~~e~~~ 961 (1023)
+++|+| |+++.+.+|+|+...|..|++.+.+.......+|.+.+.+.++||.|+|+++.|++|-+.|+++- +
T Consensus 285 dpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~Geid~eaivK~~d~f~gad~rn~~tEag~Fa~~~~----~-- 358 (388)
T KOG0651|consen 285 DPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHGEIDDEAILKLVDGFNGADLRNVCTEAGMFAIPEE----R-- 358 (388)
T ss_pred chhhcCCccccceeccCCcchhhceeeEeeccccccccccccHHHHHHHHhccChHHHhhhcccccccccchh----h--
Confidence 999999 99999999999999999999999887777788999999999999999999999999999888752 1
Q ss_pred HHhhCCCCCCCCcCCCCHHHHHHHHHhhC
Q 001707 962 FIQRGKNDAAPVLRPLKLEDFIQSKAKVG 990 (1023)
Q Consensus 962 ~~~~~~~~~~~~~r~Lt~eDF~~Al~kv~ 990 (1023)
..+.+|||..++.++.
T Consensus 359 -------------~~vl~Ed~~k~vrk~~ 374 (388)
T KOG0651|consen 359 -------------DEVLHEDFMKLVRKQA 374 (388)
T ss_pred -------------HHHhHHHHHHHHHHHH
Confidence 1467899999988764
No 33
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.97 E-value=1.2e-30 Score=305.81 Aligned_cols=275 Identities=29% Similarity=0.528 Sum_probs=219.5
Q ss_pred CCCCcccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc----------
Q 001707 723 GEIGVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGAN---------- 792 (1023)
Q Consensus 723 ~e~~vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~elg~~---------- 792 (1023)
..|.++|+||||++.+++++++.+.+|+.++++|...| +.+++++|||||||||||++|+++|++++.+
T Consensus 175 ~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~g-l~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~ 253 (512)
T TIGR03689 175 EVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYD-LKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSY 253 (512)
T ss_pred cCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhcc-CCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCcee
Confidence 34679999999999999999999999999999999888 6788999999999999999999999998654
Q ss_pred EEEEeccccchhhhhhHHHHHHHHHHHHhhc----CCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhcCccCCCC
Q 001707 793 FISITGSTLTSKWFGDAEKLTKALFSFASKL----APVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKES 868 (1023)
Q Consensus 793 fi~vs~seL~s~~~ge~e~~I~~lF~~A~k~----~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~~~ 868 (1023)
|+.+..+++.++|.|+.+..++.+|..|+.. .|+||||||+|.++..+.........++++++|+..|+++...
T Consensus 254 fl~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~-- 331 (512)
T TIGR03689 254 FLNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESL-- 331 (512)
T ss_pred EEeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccC--
Confidence 6677888999999999999999999998764 6999999999999988765444555678889999999998543
Q ss_pred ceEEEEEecCCCCCCcHHHHh--hcCCceeecCCCHHHHHHHHHHHHhcc-ccC---------CccCHHHHHHH------
Q 001707 869 QKILILGATNRPFDLDDAVIR--RLPRRIYVDLPDAENRMKILRIFLAHE-SLE---------SGFQFNELANA------ 930 (1023)
Q Consensus 869 ~~VlVIaTTN~p~~Ld~aLlr--RFd~~I~V~lPd~eeR~~ILk~~L~~~-~l~---------~dvdl~~LA~~------ 930 (1023)
.+++||+|||+++.||++++| ||+..|+|++|+.++|.+||+.++... ++. ...++..+++.
T Consensus 332 ~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~l~l~~~l~~~~g~~~a~~~al~~~av~~~~ 411 (512)
T TIGR03689 332 DNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTDSLPLDADLAEFDGDREATAAALIQRAVDHLY 411 (512)
T ss_pred CceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhccCCchHHHHHhcCCCHHHHHHHHHHHHHHHh
Confidence 479999999999999999999 999999999999999999999998642 220 11223333322
Q ss_pred -----------------------ccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCcCCCCHHHHHHHHH
Q 001707 931 -----------------------TEGYSGSDLKNLCIAAAYRPVQELLEEERKLFIQRGKNDAAPVLRPLKLEDFIQSKA 987 (1023)
Q Consensus 931 -----------------------TeGySgaDL~~L~~~Aa~~Airr~l~~e~~~~~~~~~~~~~~~~r~Lt~eDF~~Al~ 987 (1023)
++.+||++|+++|..|...|+++.+.. ....|+++|+..|+.
T Consensus 412 a~~~~~~~l~~~~~~g~~~~l~~~d~~sGa~i~~iv~~a~~~ai~~~~~~---------------~~~~~~~~~l~~a~~ 476 (512)
T TIGR03689 412 ATSEENRYVEVTYANGSTEVLYFKDFVSGAMIANIVDRAKKRAIKDHITG---------------GQVGLRIEHLLAAVL 476 (512)
T ss_pred hhhcccceeEEEecCCceeeEeecccccHHHHHHHHHHHHHHHHHHHHhc---------------CCcCcCHHHHHHHHH
Confidence 446788888888888888888776531 124799999999987
Q ss_pred hhCCCcccchhhHHHHHHHHHHhCCCCCC
Q 001707 988 KVGPSVAYDAASMNELRKWNEQYGEGGSR 1016 (1023)
Q Consensus 988 kv~PSvs~d~~~m~el~kW~d~yG~~g~r 1016 (1023)
..-..- .+...-..-.+|.-+-|..|.|
T Consensus 477 ~e~~~~-~~~~~~~~~~~w~~~~~~~~~~ 504 (512)
T TIGR03689 477 DEFRES-EDLPNTTNPDDWARISGKKGER 504 (512)
T ss_pred Hhhccc-ccCCCCCCHHHHhhhhCCCCCc
Confidence 543211 0111111123699998887655
No 34
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.97 E-value=8.4e-31 Score=322.44 Aligned_cols=286 Identities=35% Similarity=0.612 Sum_probs=240.8
Q ss_pred CCcccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccchh
Q 001707 725 IGVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTSK 804 (1023)
Q Consensus 725 ~~vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~elg~~fi~vs~seL~s~ 804 (1023)
+.++|+||+|++.+++.+++++.+|+.+|+.|...+ +.++++||||||||||||+||+++|++++.+|+.++++++.+.
T Consensus 173 ~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~g-i~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~ 251 (733)
T TIGR01243 173 PKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLG-IEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSK 251 (733)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcC-CCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhcc
Confidence 568999999999999999999999999999999988 5788999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHhhcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhcCccCCCCceEEEEEecCCCCCCc
Q 001707 805 WFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPFDLD 884 (1023)
Q Consensus 805 ~~ge~e~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~~~~~VlVIaTTN~p~~Ld 884 (1023)
+.|+.+..++.+|..|....|+||||||||.+.+.+... ..+...++.++|+..++++.. ..+++||++||.++.+|
T Consensus 252 ~~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~-~~~~~~~~~~~Ll~~ld~l~~--~~~vivI~atn~~~~ld 328 (733)
T TIGR01243 252 YYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEV-TGEVEKRVVAQLLTLMDGLKG--RGRVIVIGATNRPDALD 328 (733)
T ss_pred cccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCC-cchHHHHHHHHHHHHhhcccc--CCCEEEEeecCChhhcC
Confidence 999999999999999999999999999999998876543 234557788899999998843 45799999999999999
Q ss_pred HHHHh--hcCCceeecCCCHHHHHHHHHHHHhccccCCccCHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001707 885 DAVIR--RLPRRIYVDLPDAENRMKILRIFLAHESLESGFQFNELANATEGYSGSDLKNLCIAAAYRPVQELLEEERKLF 962 (1023)
Q Consensus 885 ~aLlr--RFd~~I~V~lPd~eeR~~ILk~~L~~~~l~~dvdl~~LA~~TeGySgaDL~~L~~~Aa~~Airr~l~~e~~~~ 962 (1023)
+++++ ||+..+.++.|+.++|.+||+.+.....+..+.++..++..++||+++||..+|..|++.++++.+.......
T Consensus 329 ~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d~~l~~la~~t~G~~gadl~~l~~~a~~~al~r~~~~~~~~~ 408 (733)
T TIGR01243 329 PALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAEDVDLDKLAEVTHGFVGADLAALAKEAAMAALRRFIREGKINF 408 (733)
T ss_pred HHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 99998 9999999999999999999999988887778889999999999999999999999999999998765211100
Q ss_pred HhhCCCCCCCCcCCCCHHHHHHHHHhhCCCcccchhhHHHHHHHHHHhCCCC
Q 001707 963 IQRGKNDAAPVLRPLKLEDFIQSKAKVGPSVAYDAASMNELRKWNEQYGEGG 1014 (1023)
Q Consensus 963 ~~~~~~~~~~~~r~Lt~eDF~~Al~kv~PSvs~d~~~m~el~kW~d~yG~~g 1014 (1023)
..............++++||..|++.++|+...+.........|.+++|...
T Consensus 409 ~~~~i~~~~~~~~~v~~~df~~Al~~v~ps~~~~~~~~~~~~~~~di~g~~~ 460 (733)
T TIGR01243 409 EAEEIPAEVLKELKVTMKDFMEALKMVEPSAIREVLVEVPNVRWSDIGGLEE 460 (733)
T ss_pred ccccccchhcccccccHHHHHHHHhhccccccchhhccccccchhhcccHHH
Confidence 0000001111224689999999999999987654433333457877776543
No 35
>CHL00176 ftsH cell division protein; Validated
Probab=99.97 E-value=2.9e-30 Score=310.81 Aligned_cols=244 Identities=34% Similarity=0.589 Sum_probs=216.0
Q ss_pred CCCCcccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccc
Q 001707 723 GEIGVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLT 802 (1023)
Q Consensus 723 ~e~~vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~elg~~fi~vs~seL~ 802 (1023)
.+..++|+|++|++++++.+.+++.. +..++.|...+ ..++++|||+||||||||+||+++|.+++.+|+.++++++.
T Consensus 176 ~~~~~~f~dv~G~~~~k~~l~eiv~~-lk~~~~~~~~g-~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~ 253 (638)
T CHL00176 176 ADTGITFRDIAGIEEAKEEFEEVVSF-LKKPERFTAVG-AKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFV 253 (638)
T ss_pred cCCCCCHHhccChHHHHHHHHHHHHH-HhCHHHHhhcc-CCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHH
Confidence 34568999999999999999998765 78888888877 46788999999999999999999999999999999999998
Q ss_pred hhhhhhHHHHHHHHHHHHhhcCCeEEEeccchhhhhccCCC--chhHHHHHHHHHHHhhhcCccCCCCceEEEEEecCCC
Q 001707 803 SKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGA--FEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRP 880 (1023)
Q Consensus 803 s~~~ge~e~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~--~~~e~~~ril~~LL~~Ldgl~~~~~~~VlVIaTTN~p 880 (1023)
..+.+.....++.+|..|+...||||||||||.+...+... ..+.....+++.|+..++++.. +.+++||+|||++
T Consensus 254 ~~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~--~~~ViVIaaTN~~ 331 (638)
T CHL00176 254 EMFVGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKG--NKGVIVIAATNRV 331 (638)
T ss_pred HHhhhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccC--CCCeeEEEecCch
Confidence 88888888899999999999999999999999998766431 2234456788899999998753 4579999999999
Q ss_pred CCCcHHHHh--hcCCceeecCCCHHHHHHHHHHHHhccccCCccCHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHHHH
Q 001707 881 FDLDDAVIR--RLPRRIYVDLPDAENRMKILRIFLAHESLESGFQFNELANATEGYSGSDLKNLCIAAAYRPVQELLEEE 958 (1023)
Q Consensus 881 ~~Ld~aLlr--RFd~~I~V~lPd~eeR~~ILk~~L~~~~l~~dvdl~~LA~~TeGySgaDL~~L~~~Aa~~Airr~l~~e 958 (1023)
+.+|++++| ||++.+.|++|+.++|.+||+.++....+..++++..+|..|.||+++||.++|++|+..+.++.
T Consensus 332 ~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~d~~l~~lA~~t~G~sgaDL~~lvneAal~a~r~~---- 407 (638)
T CHL00176 332 DILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSPDVSLELIARRTPGFSGADLANLLNEAAILTARRK---- 407 (638)
T ss_pred HhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhC----
Confidence 999999998 99999999999999999999999998777788999999999999999999999999998877541
Q ss_pred HHHHHhhCCCCCCCCcCCCCHHHHHHHHHhh
Q 001707 959 RKLFIQRGKNDAAPVLRPLKLEDFIQSKAKV 989 (1023)
Q Consensus 959 ~~~~~~~~~~~~~~~~r~Lt~eDF~~Al~kv 989 (1023)
...|+++||..|+.++
T Consensus 408 ---------------~~~It~~dl~~Ai~rv 423 (638)
T CHL00176 408 ---------------KATITMKEIDTAIDRV 423 (638)
T ss_pred ---------------CCCcCHHHHHHHHHHH
Confidence 1469999999999887
No 36
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=4.7e-30 Score=283.57 Aligned_cols=281 Identities=17% Similarity=0.212 Sum_probs=211.1
Q ss_pred HHHHHHHhhcccCCCcccccccccccccchhhHHHHHHhhhccccCccchhhccccccCCCCceeeccCCChhHHHHHHH
Q 001707 161 ERFKNEFSRRIVPWEKINISWDTFPYYINENTKSLLVECVGSHLKHKKFTATFGARLTSSSGRILLRSVPGTELYRERLI 240 (1023)
Q Consensus 161 ~~~~~~~~~~v~~~~~~~vsf~~fpyylse~tk~~L~~~~~~hl~~~~~~~~~~~~l~~~~~~iLL~~~~gsE~y~e~L~ 240 (1023)
..||.-+...||.|.+|.|+|+++... |.+|+.|.+.+..+|+++++++ ..+|..+++.|||+|||| +.++|||
T Consensus 71 ne~E~~i~s~~v~p~~I~v~f~DIggL--e~v~~~L~e~VilPlr~pelF~--~g~Ll~p~kGiLL~GPpG--~GKTmlA 144 (386)
T KOG0737|consen 71 NEYEKRIASDVVPPSEIGVSFDDIGGL--EEVKDALQELVILPLRRPELFA--KGKLLRPPKGILLYGPPG--TGKTMLA 144 (386)
T ss_pred hHHHHHhhhcccchhhceeehhhccch--HHHHHHHHHHHhhcccchhhhc--ccccccCCccceecCCCC--chHHHHH
Confidence 458999999999999999999999999 9999999999999999999974 458999999999999999 9999999
Q ss_pred HHHHhhcCCcEEEeecCCCCCCCCCCCCCCccCCCcccccccccccccccCcchhhccccccccCCCCchHHHHHHHHHH
Q 001707 241 RALARELQVPLLVLDSSVLAPYDFADDSSDCESDNYEETSESEVEDENDASNEEEWTSSNEARTDGSDSEADMQATAEAA 320 (1023)
Q Consensus 241 kAlA~~~~a~ll~~ds~~l~~~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~k~~~s~~~~~~~~~~~~~ 320 (1023)
||+|++.||.++.|+.+.|+..|||+..
T Consensus 145 KA~Akeaga~fInv~~s~lt~KWfgE~e---------------------------------------------------- 172 (386)
T KOG0737|consen 145 KAIAKEAGANFINVSVSNLTSKWFGEAQ---------------------------------------------------- 172 (386)
T ss_pred HHHHHHcCCCcceeeccccchhhHHHHH----------------------------------------------------
Confidence 9999999999999999876664331110
Q ss_pred HhhccCcchHHHhhhhcccccCCccccccccCCCCccccccccCCCeEEEeCCCcccccccceeeeccccCCCCCCCccc
Q 001707 321 LKKLVPFNLEELEKKLSGELDSSSESSKSEAAEPSDTSKRLLKKGDRVKYIGPSVRVEADNRIILGKIMTSDGPKNAYTI 400 (1023)
Q Consensus 321 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gdrvk~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (1023)
T Consensus 173 -------------------------------------------------------------------------------- 172 (386)
T KOG0737|consen 173 -------------------------------------------------------------------------------- 172 (386)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCCCCCCcccEEeecCCcceeeeccccCCCCCCCCCCcccCCCCCCCcccccccccccccccchhhhHHHHHHHHHH
Q 001707 401 IPDRALSSGQRGEVYEVNGDRAAVILDISADNKGEGEKDDKVAEQPARPPVYWIDVKHIEHDLDTQAEDCYIAMEALCEV 480 (1023)
Q Consensus 401 ~~~r~~~~g~~g~v~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~e~ 480 (1023)
-++.++|-.
T Consensus 173 -----------------------------------------------------------------------Klv~AvFsl 181 (386)
T KOG0737|consen 173 -----------------------------------------------------------------------KLVKAVFSL 181 (386)
T ss_pred -----------------------------------------------------------------------HHHHHHHhh
Confidence 166778888
Q ss_pred HhhcCCeEEEEcCchhhhhhccCCccHHHHH---HHHHHHHhcCCCCEEEEecccCCCCCccccccccccccccccccCC
Q 001707 481 LHSTQPLIVYFPDSSLWLSRAVPRCNRKEFV---RKVEEMFDQLSGPVVLICGQNKNETGPKEKEKFTMILPNFGRLAKL 557 (1023)
Q Consensus 481 ~~~~~p~Iiff~di~~~~~~s~~~~~~~~~~---s~l~~~~~~~~g~v~vI~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 557 (1023)
|.+.||+|||+||||..++.. +-+.|+-.. ..|-.+-||+.-
T Consensus 182 AsKl~P~iIFIDEvds~L~~R-~s~dHEa~a~mK~eFM~~WDGl~s---------------------------------- 226 (386)
T KOG0737|consen 182 ASKLQPSIIFIDEVDSFLGQR-RSTDHEATAMMKNEFMALWDGLSS---------------------------------- 226 (386)
T ss_pred hhhcCcceeehhhHHHHHhhc-ccchHHHHHHHHHHHHHHhccccC----------------------------------
Confidence 889999999999999987665 455665442 222223333330
Q ss_pred CCcchhhhcccccCCCcchHHHHhccccEEEEcCCChHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhccCCcccccc
Q 001707 558 PLPLQRLTEGLKATKRSDDNEIYNLFTNVLSIHPPKEEDLLRTFNKQVEEDRRIVIYRSNLNELHKVLEDHELSCTDLLH 637 (1023)
Q Consensus 558 ~~~~~~LvIGmTNR~d~iDeaL~rrFe~~ieI~LPdee~Rl~Il~Iht~~~~~~~~~~~~v~~l~~~l~t~~~~gaDL~~ 637 (1023)
..+-.+||.|+||||-.+|+|++|||+..|+|++|+.++|.+||+.-+++ +..-.+-|+++++. .|+||+|.||..
T Consensus 227 ~~~~rVlVlgATNRP~DlDeAiiRR~p~rf~V~lP~~~qR~kILkviLk~--e~~e~~vD~~~iA~--~t~GySGSDLke 302 (386)
T KOG0737|consen 227 KDSERVLVLGATNRPFDLDEAIIRRLPRRFHVGLPDAEQRRKILKVILKK--EKLEDDVDLDEIAQ--MTEGYSGSDLKE 302 (386)
T ss_pred CCCceEEEEeCCCCCccHHHHHHHhCcceeeeCCCchhhHHHHHHHHhcc--cccCcccCHHHHHH--hcCCCcHHHHHH
Confidence 00011456699999999999999999999999999999999999988643 33335566777766 899999999999
Q ss_pred cccchhhhhhhhhhhhHhhc-----ccccccccCCCC---ccCCceeeCHHHHHHHHHHhhhh
Q 001707 638 VNTDGVILTKQRAEKVVGWA-----KNHYLSSCSFPS---VKGQRLHLPRESLEIAILRLKEQ 692 (1023)
Q Consensus 638 Lc~~a~~ls~~~~~~~V~~A-----~~~~l~~~~~~~---v~~~kv~V~~~df~~Al~~l~p~ 692 (1023)
||+.|++....++ +..- ...++......+ ..-..--+.++||..|++.+-++
T Consensus 303 lC~~Aa~~~ire~---~~~~~~~~d~d~~~~d~~~~~~~~~~~~~r~l~~eDf~~a~~~v~~~ 362 (386)
T KOG0737|consen 303 LCRLAALRPIREL---LVSETGLLDLDKAIADLKPTQAAASSCLLRPLEQEDFPKAINRVSAS 362 (386)
T ss_pred HHHHHhHhHHHHH---HHhcccchhhhhhhhhccCCcccccccccCcccHHHHHHHHHhhhhH
Confidence 9999988764442 2221 011111000000 11113456788888888876554
No 37
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.97 E-value=2.6e-29 Score=304.63 Aligned_cols=262 Identities=34% Similarity=0.547 Sum_probs=224.3
Q ss_pred CCCCcccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccc
Q 001707 723 GEIGVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLT 802 (1023)
Q Consensus 723 ~e~~vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~elg~~fi~vs~seL~ 802 (1023)
.....+|+|+.|.+..++.+.+.+.+ +..+..|...+ ...+++|||+||||||||++|+++|.+++.+|+.++++++.
T Consensus 145 ~~~~~~~~di~g~~~~~~~l~~i~~~-~~~~~~~~~~~-~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~ 222 (644)
T PRK10733 145 DQIKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLG-GKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFV 222 (644)
T ss_pred hhhhCcHHHHcCHHHHHHHHHHHHHH-hhCHHHHHhcC-CCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhH
Confidence 44567899999999999999998876 56677776555 35668999999999999999999999999999999999999
Q ss_pred hhhhhhHHHHHHHHHHHHhhcCCeEEEeccchhhhhccCCC--chhHHHHHHHHHHHhhhcCccCCCCceEEEEEecCCC
Q 001707 803 SKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGA--FEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRP 880 (1023)
Q Consensus 803 s~~~ge~e~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~--~~~e~~~ril~~LL~~Ldgl~~~~~~~VlVIaTTN~p 880 (1023)
..+.+.....++.+|..|+..+|+||||||||.+...+... ..+....+++++|+..|+++.. +..++||+|||+|
T Consensus 223 ~~~~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~--~~~vivIaaTN~p 300 (644)
T PRK10733 223 EMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEG--NEGIIVIAATNRP 300 (644)
T ss_pred HhhhcccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccC--CCCeeEEEecCCh
Confidence 98999889999999999999999999999999998776542 2344556789999999999854 4579999999999
Q ss_pred CCCcHHHHh--hcCCceeecCCCHHHHHHHHHHHHhccccCCccCHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHHHH
Q 001707 881 FDLDDAVIR--RLPRRIYVDLPDAENRMKILRIFLAHESLESGFQFNELANATEGYSGSDLKNLCIAAAYRPVQELLEEE 958 (1023)
Q Consensus 881 ~~Ld~aLlr--RFd~~I~V~lPd~eeR~~ILk~~L~~~~l~~dvdl~~LA~~TeGySgaDL~~L~~~Aa~~Airr~l~~e 958 (1023)
+.||++++| ||++.|.|++|+.++|.+||+.++...++..++++..+|+.|.||||+||.++|++|+..|+++
T Consensus 301 ~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~d~~~la~~t~G~sgadl~~l~~eAa~~a~r~----- 375 (644)
T PRK10733 301 DVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARG----- 375 (644)
T ss_pred hhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCcCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHc-----
Confidence 999999998 9999999999999999999999999988888999999999999999999999999999998864
Q ss_pred HHHHHhhCCCCCCCCcCCCCHHHHHHHHHhhCCCcccchhhHHHHHHHH
Q 001707 959 RKLFIQRGKNDAAPVLRPLKLEDFIQSKAKVGPSVAYDAASMNELRKWN 1007 (1023)
Q Consensus 959 ~~~~~~~~~~~~~~~~r~Lt~eDF~~Al~kv~PSvs~d~~~m~el~kW~ 1007 (1023)
....|+++||.+|+.++.+........+.+..+|.
T Consensus 376 --------------~~~~i~~~d~~~a~~~v~~g~~~~~~~~~~~~~~~ 410 (644)
T PRK10733 376 --------------NKRVVSMVEFEKAKDKIMMGAERRSMVMTEAQKES 410 (644)
T ss_pred --------------CCCcccHHHHHHHHHHHhcccccccccccHHHHHH
Confidence 11469999999999988776544333333333333
No 38
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.7e-29 Score=308.03 Aligned_cols=266 Identities=36% Similarity=0.596 Sum_probs=224.0
Q ss_pred CCCcccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEec
Q 001707 724 EIGVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEA-----GANFISITG 798 (1023)
Q Consensus 724 e~~vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~el-----g~~fi~vs~ 798 (1023)
+..+.|++|||++.++..|++.|..|+.+|+.|...+ ++||+|||+|||||||||..|+|+|..+ .+.|+.-+.
T Consensus 259 ~~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~-itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkg 337 (1080)
T KOG0732|consen 259 DSSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFN-ITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKG 337 (1080)
T ss_pred hcccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcc-cCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcC
Confidence 4568999999999999999999999999999999998 7899999999999999999999999988 457788889
Q ss_pred cccchhhhhhHHHHHHHHHHHHhhcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhcCccCCCCceEEEEEecC
Q 001707 799 STLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATN 878 (1023)
Q Consensus 799 seL~s~~~ge~e~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~~~~~VlVIaTTN 878 (1023)
++..++|+|+.+..++.+|..|++.+|+|||+||||-|.+.|... .......++.+||.+|+|+.+. ..|+||||||
T Consensus 338 aD~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSsk-qEqih~SIvSTLLaLmdGldsR--gqVvvigATn 414 (1080)
T KOG0732|consen 338 ADCLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSK-QEQIHASIVSTLLALMDGLDSR--GQVVVIGATN 414 (1080)
T ss_pred chhhccccCcHHHHHHHHHHHHhccCceEEeccccccccccccch-HHHhhhhHHHHHHHhccCCCCC--CceEEEcccC
Confidence 999999999999999999999999999999999999999888543 2344567889999999999764 5799999999
Q ss_pred CCCCCcHHHHh--hcCCceeecCCCHHHHHHHHHHHHhccccC-CccCHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHH
Q 001707 879 RPFDLDDAVIR--RLPRRIYVDLPDAENRMKILRIFLAHESLE-SGFQFNELANATEGYSGSDLKNLCIAAAYRPVQELL 955 (1023)
Q Consensus 879 ~p~~Ld~aLlr--RFd~~I~V~lPd~eeR~~ILk~~L~~~~l~-~dvdl~~LA~~TeGySgaDL~~L~~~Aa~~Airr~l 955 (1023)
+|+.+|++++| ||++.+++++|+.+.|..|+..+..+.... ...-+..||+.|.||-|+||+.+|.+|++.++++-.
T Consensus 415 Rpda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~gy~gaDlkaLCTeAal~~~~r~~ 494 (1080)
T KOG0732|consen 415 RPDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEETSGYGGADLKALCTEAALIALRRSF 494 (1080)
T ss_pred CccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhccccchHHHHHHHHHHhhhhhcccc
Confidence 99999999999 999999999999999999999987754421 334477899999999999999999999999998742
Q ss_pred HHHHHHHHhhCCCCCCCCcCCCCHHHHHHHHHhhCCCcccc
Q 001707 956 EEERKLFIQRGKNDAAPVLRPLKLEDFIQSKAKVGPSVAYD 996 (1023)
Q Consensus 956 ~~e~~~~~~~~~~~~~~~~r~Lt~eDF~~Al~kv~PSvs~d 996 (1023)
..... .............+...||..|+.++.|+....
T Consensus 495 Pq~y~---s~~kl~~d~~~ikV~~~~f~~A~~~i~ps~~R~ 532 (1080)
T KOG0732|consen 495 PQIYS---SSDKLLIDVALIKVEVRDFVEAMSRITPSSRRS 532 (1080)
T ss_pred Ceeec---ccccccccchhhhhhhHhhhhhhhccCCCCCcc
Confidence 11000 000111112223488899999998888876653
No 39
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=4.1e-29 Score=282.95 Aligned_cols=271 Identities=27% Similarity=0.460 Sum_probs=221.9
Q ss_pred Cccccc--ccChHHHHH-HHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC-cEEEEecccc
Q 001707 726 GVRFDD--IGALEDVKK-ALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGA-NFISITGSTL 801 (1023)
Q Consensus 726 ~vtfdD--IgGle~vk~-~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~elg~-~fi~vs~seL 801 (1023)
+-.|++ |||++.--. -.+++.....--|+...+.| +...+|+|||||||||||.+||.|...+++ +--.++++++
T Consensus 215 df~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lG-i~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPeI 293 (744)
T KOG0741|consen 215 DFNFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLG-IKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEI 293 (744)
T ss_pred CCChhhcccccchHHHHHHHHHHHHhhcCCHHHHHHcC-ccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHHH
Confidence 455665 688875544 44556656566778888888 677899999999999999999999999965 4556799999
Q ss_pred chhhhhhHHHHHHHHHHHHhh--------cCCeEEEeccchhhhhccCCCch-hHHHHHHHHHHHhhhcCccCCCCceEE
Q 001707 802 TSKWFGDAEKLTKALFSFASK--------LAPVIIFVDEVDSLLGARGGAFE-HEATRRMRNEFMSAWDGLRSKESQKIL 872 (1023)
Q Consensus 802 ~s~~~ge~e~~I~~lF~~A~k--------~~PsIIfIDEID~L~~~r~~~~~-~e~~~ril~~LL~~Ldgl~~~~~~~Vl 872 (1023)
+++|+|++|..++++|.+|.. +...||++||||.++..|++..+ ..+...+.|+||..|||...- .+++
T Consensus 294 L~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeqL--NNIL 371 (744)
T KOG0741|consen 294 LNKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQL--NNIL 371 (744)
T ss_pred HHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHHhh--hcEE
Confidence 999999999999999999853 23469999999999999876544 567889999999999999654 5799
Q ss_pred EEEecCCCCCCcHHHHh--hcCCceeecCCCHHHHHHHHHHHHhcc----ccCCccCHHHHHHHccCCcHHHHHHHHHHH
Q 001707 873 ILGATNRPFDLDDAVIR--RLPRRIYVDLPDAENRMKILRIFLAHE----SLESGFQFNELANATEGYSGSDLKNLCIAA 946 (1023)
Q Consensus 873 VIaTTN~p~~Ld~aLlr--RFd~~I~V~lPd~eeR~~ILk~~L~~~----~l~~dvdl~~LA~~TeGySgaDL~~L~~~A 946 (1023)
|||-||+.+.+|++|+| ||...+++.+||+..|.+||+.+.+.. .+.+++|+++||..|..|||++|..+++.|
T Consensus 372 VIGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfSGAEleglVksA 451 (744)
T KOG0741|consen 372 VIGMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKNFSGAELEGLVKSA 451 (744)
T ss_pred EEeccCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCchhHHHHHHHHH
Confidence 99999999999999999 999999999999999999999987643 356899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCCCCCCcCCCCHHHHHHHHHhhCCCcccchhhHHHH
Q 001707 947 AYRPVQELLEEERKLFIQRGKNDAAPVLRPLKLEDFIQSKAKVGPSVAYDAASMNEL 1003 (1023)
Q Consensus 947 a~~Airr~l~~e~~~~~~~~~~~~~~~~r~Lt~eDF~~Al~kv~PSvs~d~~~m~el 1003 (1023)
...|+.|.+...-+ ............|+++||..|+.+++|.+-.....++.+
T Consensus 452 ~S~A~nR~vk~~~~----~~~~~~~~e~lkV~r~DFl~aL~dVkPAFG~see~l~~~ 504 (744)
T KOG0741|consen 452 QSFAMNRHVKAGGK----VEVDPVAIENLKVTRGDFLNALEDVKPAFGISEEDLERF 504 (744)
T ss_pred HHHHHHhhhccCcc----eecCchhhhheeecHHHHHHHHHhcCcccCCCHHHHHHH
Confidence 99999987754311 011111223357999999999999999986554444443
No 40
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.96 E-value=1.7e-28 Score=308.99 Aligned_cols=209 Identities=21% Similarity=0.216 Sum_probs=170.0
Q ss_pred hccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccchhh------------------------------
Q 001707 756 FSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTSKW------------------------------ 805 (1023)
Q Consensus 756 f~~~gli~p~~gVLL~GPPGTGKT~LArAIA~elg~~fi~vs~seL~s~~------------------------------ 805 (1023)
+.+.| ..|++||||+||||||||+||+|+|.++++||+.+++++++.++
T Consensus 1622 slrLG-l~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e 1700 (2281)
T CHL00206 1622 SLRLA-LSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTE 1700 (2281)
T ss_pred HHHcC-CCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccccccchh
Confidence 34556 57899999999999999999999999999999999999988643
Q ss_pred -----------hhhHH--HHHHHHHHHHhhcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhcCccC-CCCceE
Q 001707 806 -----------FGDAE--KLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRS-KESQKI 871 (1023)
Q Consensus 806 -----------~ge~e--~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~-~~~~~V 871 (1023)
.+..+ ..++.+|..|++.+||||||||||.+..... ....+++|+..|++... ....+|
T Consensus 1701 ~~e~~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~ds-------~~ltL~qLLneLDg~~~~~s~~~V 1773 (2281)
T CHL00206 1701 LLTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNES-------NYLSLGLLVNSLSRDCERCSTRNI 1773 (2281)
T ss_pred hhhhcchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCcc-------ceehHHHHHHHhccccccCCCCCE
Confidence 11222 3488999999999999999999999975421 11236788899987642 234679
Q ss_pred EEEEecCCCCCCcHHHHh--hcCCceeecCCCHHHHHHHHHHHHh--ccccCC-ccCHHHHHHHccCCcHHHHHHHHHHH
Q 001707 872 LILGATNRPFDLDDAVIR--RLPRRIYVDLPDAENRMKILRIFLA--HESLES-GFQFNELANATEGYSGSDLKNLCIAA 946 (1023)
Q Consensus 872 lVIaTTN~p~~Ld~aLlr--RFd~~I~V~lPd~eeR~~ILk~~L~--~~~l~~-dvdl~~LA~~TeGySgaDL~~L~~~A 946 (1023)
+||||||+|+.|||||+| ||++.|.|+.|+..+|.+++..++. ...+.. .+++..+|..|.||||+||.+||++|
T Consensus 1774 IVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGADLanLvNEA 1853 (2281)
T CHL00206 1774 LVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDLVALTNEA 1853 (2281)
T ss_pred EEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHHHHHHHHHH
Confidence 999999999999999999 9999999999999999999886543 333433 36899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCCCCCCcCCCCHHHHHHHHHhhCC
Q 001707 947 AYRPVQELLEEERKLFIQRGKNDAAPVLRPLKLEDFIQSKAKVGP 991 (1023)
Q Consensus 947 a~~Airr~l~~e~~~~~~~~~~~~~~~~r~Lt~eDF~~Al~kv~P 991 (1023)
+..|+++. ...|+++||..|+.++..
T Consensus 1854 aliAirq~-------------------ks~Id~~~I~~Al~Rq~~ 1879 (2281)
T CHL00206 1854 LSISITQK-------------------KSIIDTNTIRSALHRQTW 1879 (2281)
T ss_pred HHHHHHcC-------------------CCccCHHHHHHHHHHHHh
Confidence 99999862 124777777777776543
No 41
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.95 E-value=1.1e-26 Score=259.46 Aligned_cols=221 Identities=17% Similarity=0.253 Sum_probs=171.9
Q ss_pred cccccc-cChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccchhh
Q 001707 727 VRFDDI-GALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTSKW 805 (1023)
Q Consensus 727 vtfdDI-gGle~vk~~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~elg~~fi~vs~seL~s~~ 805 (1023)
.+|+++ +|+.-...-+..++...-++ .....+ +++|.+++||||||||||++|+++|.++|++|+.+++++|.++|
T Consensus 112 ~~f~~~~g~~~~~p~f~dk~~~hi~kn--~l~~~~-ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~ 188 (413)
T PLN00020 112 RSFDNLVGGYYIAPAFMDKVAVHIAKN--FLALPN-IKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESEN 188 (413)
T ss_pred cchhhhcCccccCHHHHHHHHHHHHhh--hhhccC-CCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCc
Confidence 345665 55544444444433221111 111234 68899999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhh-----cCCeEEEeccchhhhhccCCCchhHHHHHHH-HHHHhhhcCcc----------CCCCc
Q 001707 806 FGDAEKLTKALFSFASK-----LAPVIIFVDEVDSLLGARGGAFEHEATRRMR-NEFMSAWDGLR----------SKESQ 869 (1023)
Q Consensus 806 ~ge~e~~I~~lF~~A~k-----~~PsIIfIDEID~L~~~r~~~~~~e~~~ril-~~LL~~Ldgl~----------~~~~~ 869 (1023)
.|++++.++.+|..|+. .+||||||||||.+++.+.+. .....++++ .+||.++|++. .....
T Consensus 189 vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~g~r~~~-~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~ 267 (413)
T PLN00020 189 AGEPGKLIRQRYREAADIIKKKGKMSCLFINDLDAGAGRFGTT-QYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIP 267 (413)
T ss_pred CCcHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhcCCCCCCC-CcchHHHHHHHHHHHHhcCCccccccccccccccCC
Confidence 99999999999999975 469999999999999988643 344444554 79999988641 12356
Q ss_pred eEEEEEecCCCCCCcHHHHh--hcCCceeecCCCHHHHHHHHHHHHhccccCCccCHHHHHHHccC----CcHHHHHHHH
Q 001707 870 KILILGATNRPFDLDDAVIR--RLPRRIYVDLPDAENRMKILRIFLAHESLESGFQFNELANATEG----YSGSDLKNLC 943 (1023)
Q Consensus 870 ~VlVIaTTN~p~~Ld~aLlr--RFd~~I~V~lPd~eeR~~ILk~~L~~~~l~~dvdl~~LA~~TeG----ySgaDL~~L~ 943 (1023)
+|+||+|||+|+.||++|+| ||++.+ ..|+.++|.+||+.+++...+. ..++..|+..+.| |.|+--..+.
T Consensus 268 ~V~VIaTTNrpd~LDpALlRpGRfDk~i--~lPd~e~R~eIL~~~~r~~~l~-~~dv~~Lv~~f~gq~~Df~GAlrar~y 344 (413)
T PLN00020 268 RVPIIVTGNDFSTLYAPLIRDGRMEKFY--WAPTREDRIGVVHGIFRDDGVS-REDVVKLVDTFPGQPLDFFGALRARVY 344 (413)
T ss_pred CceEEEeCCCcccCCHhHcCCCCCCcee--CCCCHHHHHHHHHHHhccCCCC-HHHHHHHHHcCCCCCchhhhHHHHHHH
Confidence 79999999999999999999 999854 5899999999999999987764 5778888888776 5666666667
Q ss_pred HHHHHHHHHHH
Q 001707 944 IAAAYRPVQEL 954 (1023)
Q Consensus 944 ~~Aa~~Airr~ 954 (1023)
.++....+.++
T Consensus 345 d~~v~~~i~~~ 355 (413)
T PLN00020 345 DDEVRKWIAEV 355 (413)
T ss_pred HHHHHHHHHHh
Confidence 77766666655
No 42
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=5.4e-27 Score=275.08 Aligned_cols=307 Identities=21% Similarity=0.267 Sum_probs=235.7
Q ss_pred hhhhcchhhhHhhhcchhhhhhhcccCCCchhhHHHHHHHHhhcccCCCcccccccccccccchhhHHHHHHhhhccccC
Q 001707 127 AHARLGEHEQKEWLNNEKAAIESKKRESPFLTRRERFKNEFSRRIVPWEKINISWDTFPYYINENTKSLLVECVGSHLKH 206 (1023)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~vsf~~fpyylse~tk~~L~~~~~~hl~~ 206 (1023)
-|--|-|+|-.+|+.-+..+.+ ..|..+-.++++++...|=-|+==+|+||+.++. |.+|..+.+..-.+|+|
T Consensus 622 l~g~~~~~~~~~~~~~~~~l~~-----edf~kals~~~~~fs~aiGAPKIPnV~WdDVGGL--eevK~eIldTIqlPL~h 694 (953)
T KOG0736|consen 622 LAGGLQEEDEGELCAAGFLLTE-----EDFDKALSRLQKEFSDAIGAPKIPNVSWDDVGGL--EEVKTEILDTIQLPLKH 694 (953)
T ss_pred ccccchhccccccccccceecH-----HHHHHHHHHHHHhhhhhcCCCCCCccchhcccCH--HHHHHHHHHHhcCcccC
Confidence 3444567777888877766554 5777777889999999999999999999999999 99999999999999999
Q ss_pred ccchhhccccccCCCCceeeccCCChhHHHHHHHHHHHhhcCCcEEEeecCCCCCCCCCCCCCCccCCCccccccccccc
Q 001707 207 KKFTATFGARLTSSSGRILLRSVPGTELYRERLIRALARELQVPLLVLDSSVLAPYDFADDSSDCESDNYEETSESEVED 286 (1023)
Q Consensus 207 ~~~~~~~~~~l~~~~~~iLL~~~~gsE~y~e~L~kAlA~~~~a~ll~~ds~~l~~~~f~~~~~~~~~~~~~~~~~~e~~~ 286 (1023)
+++ |+++|-.-| +|||+|||| ++++.||||.|.+|...||.|-.
T Consensus 695 peL---fssglrkRS-GILLYGPPG--TGKTLlAKAVATEcsL~FlSVKG------------------------------ 738 (953)
T KOG0736|consen 695 PEL---FSSGLRKRS-GILLYGPPG--TGKTLLAKAVATECSLNFLSVKG------------------------------ 738 (953)
T ss_pred hhh---hhccccccc-eeEEECCCC--CchHHHHHHHHhhceeeEEeecC------------------------------
Confidence 998 567776544 699999999 89999999999999988876543
Q ss_pred ccccCcchhhccccccccCCCCchHHHHHHHHHHHhhccCcchHHHhhhhcccccCCccccccccCCCCccccccccCCC
Q 001707 287 ENDASNEEEWTSSNEARTDGSDSEADMQATAEAALKKLVPFNLEELEKKLSGELDSSSESSKSEAAEPSDTSKRLLKKGD 366 (1023)
Q Consensus 287 ~~~~~~~~~~~~~~~~k~~~s~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd 366 (1023)
| |.+.
T Consensus 739 ---------------------------------------P---ELLN--------------------------------- 743 (953)
T KOG0736|consen 739 ---------------------------------------P---ELLN--------------------------------- 743 (953)
T ss_pred ---------------------------------------H---HHHH---------------------------------
Confidence 1 1110
Q ss_pred eEEEeCCCcccccccceeeeccccCCCCCCCcccccCCCCCCCCcccEEeecCCcceeeeccccCCCCCCCCCCcccCCC
Q 001707 367 RVKYIGPSVRVEADNRIILGKIMTSDGPKNAYTIIPDRALSSGQRGEVYEVNGDRAAVILDISADNKGEGEKDDKVAEQP 446 (1023)
Q Consensus 367 rvk~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~g~v~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 446 (1023)
.|||-|-.
T Consensus 744 --MYVGqSE~---------------------------------------------------------------------- 751 (953)
T KOG0736|consen 744 --MYVGQSEE---------------------------------------------------------------------- 751 (953)
T ss_pred --HHhcchHH----------------------------------------------------------------------
Confidence 34443321
Q ss_pred CCCCcccccccccccccccchhhhHHHHHHHHHHHhhcCCeEEEEcCchhh-hhh---ccCCccHHHHHHHHHHHHhcCC
Q 001707 447 ARPPVYWIDVKHIEHDLDTQAEDCYIAMEALCEVLHSTQPLIVYFPDSSLW-LSR---AVPRCNRKEFVRKVEEMFDQLS 522 (1023)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~e~~~~~~p~Iiff~di~~~-~~~---s~~~~~~~~~~s~l~~~~~~~~ 522 (1023)
=|...||-|++..|.||||||+|-+ +.| .+......++||-|++.||+|+
T Consensus 752 --------------------------NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls 805 (953)
T KOG0736|consen 752 --------------------------NVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLS 805 (953)
T ss_pred --------------------------HHHHHHHHhhccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhccc
Confidence 3567899999999999999999997 433 4567789999999999999998
Q ss_pred CCEEEEecccCCCCCccccccccccccccccccCCCCcchhhhcccccCCCcchHHHHh--ccccEEEEcCCChH-HHHH
Q 001707 523 GPVVLICGQNKNETGPKEKEKFTMILPNFGRLAKLPLPLQRLTEGLKATKRSDDNEIYN--LFTNVLSIHPPKEE-DLLR 599 (1023)
Q Consensus 523 g~v~vI~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~LvIGmTNR~d~iDeaL~r--rFe~~ieI~LPdee-~Rl~ 599 (1023)
.. + +-.+.|||+|||||+|||||+| |||.-+|++++++. .++.
T Consensus 806 ~~------~----------------------------s~~VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~~ 851 (953)
T KOG0736|consen 806 DS------S----------------------------SQDVFVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKLR 851 (953)
T ss_pred CC------C----------------------------CCceEEEecCCCccccChhhcCCCccceeEEecCCccHHHHHH
Confidence 30 0 0113457999999999999999 99999999998654 7899
Q ss_pred HHHHHHHHHhhhhhhhhhHHHHHHHHhhccCCcccccccccchhhhhhhhhhhhHhhcccccccccCCCCccCCceeeCH
Q 001707 600 TFNKQVEEDRRIVIYRSNLNELHKVLEDHELSCTDLLHVNTDGVILTKQRAEKVVGWAKNHYLSSCSFPSVKGQRLHLPR 679 (1023)
Q Consensus 600 Il~Iht~~~~~~~~~~~~v~~l~~~l~t~~~~gaDL~~Lc~~a~~ls~~~~~~~V~~A~~~~l~~~~~~~v~~~kv~V~~ 679 (1023)
||+-.|.+++- -.+.++.++++.. --+|+||||-+||.+|.+.+..+.-.-+-..... ...-++..+.|++
T Consensus 852 vL~AlTrkFkL--dedVdL~eiAk~c-p~~~TGADlYsLCSdA~l~AikR~i~~ie~g~~~------~~e~~~~~v~V~~ 922 (953)
T KOG0736|consen 852 VLEALTRKFKL--DEDVDLVEIAKKC-PPNMTGADLYSLCSDAMLAAIKRTIHDIESGTIS------EEEQESSSVRVTM 922 (953)
T ss_pred HHHHHHHHccC--CCCcCHHHHHhhC-CcCCchhHHHHHHHHHHHHHHHHHHHHhhhcccc------ccccCCceEEEEH
Confidence 99999877651 1233455666532 3489999999999999886544321111111111 1234678999999
Q ss_pred HHHHHHHHHhhhh
Q 001707 680 ESLEIAILRLKEQ 692 (1023)
Q Consensus 680 ~df~~Al~~l~p~ 692 (1023)
+||..|+++++|+
T Consensus 923 eDflks~~~l~PS 935 (953)
T KOG0736|consen 923 EDFLKSAKRLQPS 935 (953)
T ss_pred HHHHHHHHhcCCc
Confidence 9999999999997
No 43
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=9e-26 Score=249.56 Aligned_cols=274 Identities=16% Similarity=0.202 Sum_probs=204.2
Q ss_pred HHHHHhhcccCCCcccccccccccccchhhHHHHHHhhhccccCccchhhccccccCCCCceeeccCCChhHHHHHHHHH
Q 001707 163 FKNEFSRRIVPWEKINISWDTFPYYINENTKSLLVECVGSHLKHKKFTATFGARLTSSSGRILLRSVPGTELYRERLIRA 242 (1023)
Q Consensus 163 ~~~~~~~~v~~~~~~~vsf~~fpyylse~tk~~L~~~~~~hl~~~~~~~~~~~~l~~~~~~iLL~~~~gsE~y~e~L~kA 242 (1023)
+-+.|.+.|+. ++.+|.||++-.. +..|.+|-+|+..++.-++|| ..+..+=+.|||.|||| .+++|||||
T Consensus 194 Lve~lerdIl~-~np~ikW~DIagl--~~AK~lL~EAVvlPi~mPe~F----~GirrPWkgvLm~GPPG--TGKTlLAKA 264 (491)
T KOG0738|consen 194 LVEALERDILQ-RNPNIKWDDIAGL--HEAKKLLKEAVVLPIWMPEFF----KGIRRPWKGVLMVGPPG--TGKTLLAKA 264 (491)
T ss_pred HHHHHHHHHhc-cCCCcChHhhcch--HHHHHHHHHHHhhhhhhHHHH----hhcccccceeeeeCCCC--CcHHHHHHH
Confidence 45555555554 4667999999999 999999999999999998876 67889999999999999 899999999
Q ss_pred HHhhcCCcEEEeecCCCCCCCCCCCCCCccCCCcccccccccccccccCcchhhccccccccCCCCchHHHHHHHHHHHh
Q 001707 243 LARELQVPLLVLDSSVLAPYDFADDSSDCESDNYEETSESEVEDENDASNEEEWTSSNEARTDGSDSEADMQATAEAALK 322 (1023)
Q Consensus 243 lA~~~~a~ll~~ds~~l~~~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~k~~~s~~~~~~~~~~~~~~~ 322 (1023)
+|.++|..|.+|-|++|..+
T Consensus 265 vATEc~tTFFNVSsstltSK------------------------------------------------------------ 284 (491)
T KOG0738|consen 265 VATECGTTFFNVSSSTLTSK------------------------------------------------------------ 284 (491)
T ss_pred HHHhhcCeEEEechhhhhhh------------------------------------------------------------
Confidence 99999999999988644431
Q ss_pred hccCcchHHHhhhhcccccCCccccccccCCCCccccccccCCCeEEEeCCCcccccccceeeeccccCCCCCCCccccc
Q 001707 323 KLVPFNLEELEKKLSGELDSSSESSKSEAAEPSDTSKRLLKKGDRVKYIGPSVRVEADNRIILGKIMTSDGPKNAYTIIP 402 (1023)
Q Consensus 323 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gdrvk~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (1023)
|-|.|-
T Consensus 285 -----------------------------------------------wRGeSE--------------------------- 290 (491)
T KOG0738|consen 285 -----------------------------------------------WRGESE--------------------------- 290 (491)
T ss_pred -----------------------------------------------hccchH---------------------------
Confidence 111111
Q ss_pred CCCCCCCCcccEEeecCCcceeeeccccCCCCCCCCCCcccCCCCCCCcccccccccccccccchhhhHHHHHHHHHHHh
Q 001707 403 DRALSSGQRGEVYEVNGDRAAVILDISADNKGEGEKDDKVAEQPARPPVYWIDVKHIEHDLDTQAEDCYIAMEALCEVLH 482 (1023)
Q Consensus 403 ~r~~~~g~~g~v~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~e~~~ 482 (1023)
-+|.-|||-|+
T Consensus 291 ---------------------------------------------------------------------KlvRlLFemAR 301 (491)
T KOG0738|consen 291 ---------------------------------------------------------------------KLVRLLFEMAR 301 (491)
T ss_pred ---------------------------------------------------------------------HHHHHHHHHHH
Confidence 17889999999
Q ss_pred hcCCeEEEEcCchhhhhhccCCccHH---HHHHHHHHHHhcCCCCEEEEecccCCCCCccccccccccccccccccCCCC
Q 001707 483 STQPLIVYFPDSSLWLSRAVPRCNRK---EFVRKVEEMFDQLSGPVVLICGQNKNETGPKEKEKFTMILPNFGRLAKLPL 559 (1023)
Q Consensus 483 ~~~p~Iiff~di~~~~~~s~~~~~~~---~~~s~l~~~~~~~~g~v~vI~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 559 (1023)
..-|++|||||||-+..+.-..+.|+ ++-+.|+-.||++.|..-- +|
T Consensus 302 fyAPStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t~e~------------~k------------------ 351 (491)
T KOG0738|consen 302 FYAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGTLEN------------SK------------------ 351 (491)
T ss_pred HhCCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhcccccccc------------ce------------------
Confidence 99999999999999977655556665 5678888888888732100 00
Q ss_pred cchhhhcccccCCCcchHHHHhccccEEEEcCCChHHHHHHHHHHHHHHhhhhh-hhhhHHHHHHHHhhccCCccccccc
Q 001707 560 PLQRLTEGLKATKRSDDNEIYNLFTNVLSIHPPKEEDLLRTFNKQVEEDRRIVI-YRSNLNELHKVLEDHELSCTDLLHV 638 (1023)
Q Consensus 560 ~~~~LvIGmTNR~d~iDeaL~rrFe~~ieI~LPdee~Rl~Il~Iht~~~~~~~~-~~~~v~~l~~~l~t~~~~gaDL~~L 638 (1023)
-+.|..+||=|-.|||||+||||..|||||||.++|...++|.+.. ... ...+++.|++ ++.||+|+||..+
T Consensus 352 --~VmVLAATN~PWdiDEAlrRRlEKRIyIPLP~~~~R~~Li~~~l~~---~~~~~~~~~~~lae--~~eGySGaDI~nv 424 (491)
T KOG0738|consen 352 --VVMVLAATNFPWDIDEALRRRLEKRIYIPLPDAEARSALIKILLRS---VELDDPVNLEDLAE--RSEGYSGADITNV 424 (491)
T ss_pred --eEEEEeccCCCcchHHHHHHHHhhheeeeCCCHHHHHHHHHHhhcc---ccCCCCccHHHHHH--HhcCCChHHHHHH
Confidence 0124466777778999999999999999999999999999998532 222 3334666666 8889999999999
Q ss_pred ccchhhhhhhhhhhhHhhcccccccccCC-CCccCCceeeCHHHHHHHHHHhhhh
Q 001707 639 NTDGVILTKQRAEKVVGWAKNHYLSSCSF-PSVKGQRLHLPRESLEIAILRLKEQ 692 (1023)
Q Consensus 639 c~~a~~ls~~~~~~~V~~A~~~~l~~~~~-~~v~~~kv~V~~~df~~Al~~l~p~ 692 (1023)
|+++.+..-.+. +.......+. +..+.-+.-|+..||+.|+.++.|+
T Consensus 425 CreAsm~~mRR~-------i~g~~~~ei~~lakE~~~~pv~~~Dfe~Al~~v~pS 472 (491)
T KOG0738|consen 425 CREASMMAMRRK-------IAGLTPREIRQLAKEEPKMPVTNEDFEEALRKVRPS 472 (491)
T ss_pred HHHHHHHHHHHH-------HhcCCcHHhhhhhhhccccccchhhHHHHHHHcCcC
Confidence 999987664421 1111111110 1011112448899999999999886
No 44
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=3.1e-24 Score=253.40 Aligned_cols=260 Identities=18% Similarity=0.238 Sum_probs=204.0
Q ss_pred HHHHHHHhhc----ccCCCcccccccccccccchhhHHHHHHhhhccccCccchhhccccccCCCCceeeccCCChhHHH
Q 001707 161 ERFKNEFSRR----IVPWEKINISWDTFPYYINENTKSLLVECVGSHLKHKKFTATFGARLTSSSGRILLRSVPGTELYR 236 (1023)
Q Consensus 161 ~~~~~~~~~~----v~~~~~~~vsf~~fpyylse~tk~~L~~~~~~hl~~~~~~~~~~~~l~~~~~~iLL~~~~gsE~y~ 236 (1023)
+.+++.|... .+.-.+-.|+|++...+ +..|..|.+++-..+++++++ ..-.-...++|||+|||| ..+
T Consensus 217 ~~~~~~l~~~~~~~~~~~~~~~v~~~diggl--~~~k~~l~e~v~~~~~~~e~~---~~~~~~~~~giLl~GpPG--tGK 289 (494)
T COG0464 217 DDFEEALKKVLPSRGVLFEDEDVTLDDIGGL--EEAKEELKEAIETPLKRPELF---RKLGLRPPKGVLLYGPPG--TGK 289 (494)
T ss_pred HHHHHHHHhcCcccccccCCCCcceehhhcH--HHHHHHHHHHHHhHhhChHHH---HhcCCCCCCeeEEECCCC--CCH
Confidence 4455555553 44467778999999998 999999999999999999974 332334555999999999 999
Q ss_pred HHHHHHHHhhcCCcEEEeecCCCCCCCCCCCCCCccCCCcccccccccccccccCcchhhccccccccCCCCchHHHHHH
Q 001707 237 ERLIRALARELQVPLLVLDSSVLAPYDFADDSSDCESDNYEETSESEVEDENDASNEEEWTSSNEARTDGSDSEADMQAT 316 (1023)
Q Consensus 237 e~L~kAlA~~~~a~ll~~ds~~l~~~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~k~~~s~~~~~~~~~ 316 (1023)
++||||+|++.+++++.++.+.|.+
T Consensus 290 T~lAkava~~~~~~fi~v~~~~l~s------------------------------------------------------- 314 (494)
T COG0464 290 TLLAKAVALESRSRFISVKGSELLS------------------------------------------------------- 314 (494)
T ss_pred HHHHHHHHhhCCCeEEEeeCHHHhc-------------------------------------------------------
Confidence 9999999999999999999852222
Q ss_pred HHHHHhhccCcchHHHhhhhcccccCCccccccccCCCCccccccccCCCeEEEeCCCcccccccceeeeccccCCCCCC
Q 001707 317 AEAALKKLVPFNLEELEKKLSGELDSSSESSKSEAAEPSDTSKRLLKKGDRVKYIGPSVRVEADNRIILGKIMTSDGPKN 396 (1023)
Q Consensus 317 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gdrvk~~g~~~~~~~~~~~~~~~~~~~~~~~~ 396 (1023)
||+|.+.
T Consensus 315 ----------------------------------------------------k~vGese--------------------- 321 (494)
T COG0464 315 ----------------------------------------------------KWVGESE--------------------- 321 (494)
T ss_pred ----------------------------------------------------cccchHH---------------------
Confidence 2222222
Q ss_pred CcccccCCCCCCCCcccEEeecCCcceeeeccccCCCCCCCCCCcccCCCCCCCcccccccccccccccchhhhHHHHHH
Q 001707 397 AYTIIPDRALSSGQRGEVYEVNGDRAAVILDISADNKGEGEKDDKVAEQPARPPVYWIDVKHIEHDLDTQAEDCYIAMEA 476 (1023)
Q Consensus 397 ~~~~~~~r~~~~g~~g~v~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 476 (1023)
-.|..
T Consensus 322 ---------------------------------------------------------------------------k~ir~ 326 (494)
T COG0464 322 ---------------------------------------------------------------------------KNIRE 326 (494)
T ss_pred ---------------------------------------------------------------------------HHHHH
Confidence 17889
Q ss_pred HHHHHhhcCCeEEEEcCchhhhhhcc-CCccH-HHHHHHHHHHHhcCC--CCEEEEecccCCCCCccccccccccccccc
Q 001707 477 LCEVLHSTQPLIVYFPDSSLWLSRAV-PRCNR-KEFVRKVEEMFDQLS--GPVVLICGQNKNETGPKEKEKFTMILPNFG 552 (1023)
Q Consensus 477 L~e~~~~~~p~Iiff~di~~~~~~s~-~~~~~-~~~~s~l~~~~~~~~--g~v~vI~~~~~~d~~~~~~~~~~~~~~~~~ 552 (1023)
+|+.|++.+|+||||||+|.|..... ...-. .++++.|++.|+++. ..|+
T Consensus 327 ~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~-------------------------- 380 (494)
T COG0464 327 LFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVL-------------------------- 380 (494)
T ss_pred HHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceE--------------------------
Confidence 99999999999999999999854432 22222 489999999998887 3344
Q ss_pred cccCCCCcchhhhcccccCCCcchHHHHh--ccccEEEEcCCChHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhccC
Q 001707 553 RLAKLPLPLQRLTEGLKATKRSDDNEIYN--LFTNVLSIHPPKEEDLLRTFNKQVEEDRRIVIYRSNLNELHKVLEDHEL 630 (1023)
Q Consensus 553 ~~~~~~~~~~~LvIGmTNR~d~iDeaL~r--rFe~~ieI~LPdee~Rl~Il~Iht~~~~~~~~~~~~v~~l~~~l~t~~~ 630 (1023)
|||+||||+.||+|++| ||+..|+|+|||.++|++||++|+.........+.+++.++. .|.||
T Consensus 381 ------------vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~--~t~~~ 446 (494)
T COG0464 381 ------------VIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAE--ITEGY 446 (494)
T ss_pred ------------EEecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHH--HhcCC
Confidence 45899999999999999 999999999999999999999997654444345566777777 78889
Q ss_pred CcccccccccchhhhhhhhhhhhHhhcccccccccCCCCccCCceeeCHHHHHHHHHHhhhh
Q 001707 631 SCTDLLHVNTDGVILTKQRAEKVVGWAKNHYLSSCSFPSVKGQRLHLPRESLEIAILRLKEQ 692 (1023)
Q Consensus 631 ~gaDL~~Lc~~a~~ls~~~~~~~V~~A~~~~l~~~~~~~v~~~kv~V~~~df~~Al~~l~p~ 692 (1023)
+|+||..+|.++++....+.. ...|+.+||..|+..+.|+
T Consensus 447 sgadi~~i~~ea~~~~~~~~~----------------------~~~~~~~~~~~a~~~~~p~ 486 (494)
T COG0464 447 SGADIAALVREAALEALREAR----------------------RREVTLDDFLDALKKIKPS 486 (494)
T ss_pred CHHHHHHHHHHHHHHHHHHhc----------------------cCCccHHHHHHHHHhcCCC
Confidence 999999999988776533311 3458899999999987775
No 45
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=9.8e-24 Score=226.73 Aligned_cols=237 Identities=22% Similarity=0.301 Sum_probs=178.7
Q ss_pred HHHHHhhcccCCCcccccccccccccchhhHHHHHHhhhccccCccchhhccccccCCCCceeeccCCChhHHHHHHHHH
Q 001707 163 FKNEFSRRIVPWEKINISWDTFPYYINENTKSLLVECVGSHLKHKKFTATFGARLTSSSGRILLRSVPGTELYRERLIRA 242 (1023)
Q Consensus 163 ~~~~~~~~v~~~~~~~vsf~~fpyylse~tk~~L~~~~~~hl~~~~~~~~~~~~l~~~~~~iLL~~~~gsE~y~e~L~kA 242 (1023)
++..|..+|| -+.=+|.|++.-.+ |..|++|-+|+..++|.+.++ ..=-.+-++|||+|||| ..+-.||||
T Consensus 115 Lr~~L~sAIv-~EKPNVkWsDVAGL--E~AKeALKEAVILPIKFPqlF----tGkR~PwrgiLLyGPPG--TGKSYLAKA 185 (439)
T KOG0739|consen 115 LRSALNSAIV-REKPNVKWSDVAGL--EGAKEALKEAVILPIKFPQLF----TGKRKPWRGILLYGPPG--TGKSYLAKA 185 (439)
T ss_pred HHHHhhhhhh-ccCCCCchhhhccc--hhHHHHHHhheeecccchhhh----cCCCCcceeEEEeCCCC--CcHHHHHHH
Confidence 4455555555 35679999999999 999999999999999999986 23345668899999999 899999999
Q ss_pred HHhhcCCcEEEeecCCCCCCCCCCCCCCccCCCcccccccccccccccCcchhhccccccccCCCCchHHHHHHHHHHHh
Q 001707 243 LARELQVPLLVLDSSVLAPYDFADDSSDCESDNYEETSESEVEDENDASNEEEWTSSNEARTDGSDSEADMQATAEAALK 322 (1023)
Q Consensus 243 lA~~~~a~ll~~ds~~l~~~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~k~~~s~~~~~~~~~~~~~~~ 322 (1023)
.|.+.+..|..+-||.|... |
T Consensus 186 VATEAnSTFFSvSSSDLvSK---------------------------------W-------------------------- 206 (439)
T KOG0739|consen 186 VATEANSTFFSVSSSDLVSK---------------------------------W-------------------------- 206 (439)
T ss_pred HHhhcCCceEEeehHHHHHH---------------------------------H--------------------------
Confidence 99999888877776522221 1
Q ss_pred hccCcchHHHhhhhcccccCCccccccccCCCCccccccccCCCeEEEeCCCcccccccceeeeccccCCCCCCCccccc
Q 001707 323 KLVPFNLEELEKKLSGELDSSSESSKSEAAEPSDTSKRLLKKGDRVKYIGPSVRVEADNRIILGKIMTSDGPKNAYTIIP 402 (1023)
Q Consensus 323 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gdrvk~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (1023)
.|.|-
T Consensus 207 ------------------------------------------------mGESE--------------------------- 211 (439)
T KOG0739|consen 207 ------------------------------------------------MGESE--------------------------- 211 (439)
T ss_pred ------------------------------------------------hccHH---------------------------
Confidence 11111
Q ss_pred CCCCCCCCcccEEeecCCcceeeeccccCCCCCCCCCCcccCCCCCCCcccccccccccccccchhhhHHHHHHHHHHHh
Q 001707 403 DRALSSGQRGEVYEVNGDRAAVILDISADNKGEGEKDDKVAEQPARPPVYWIDVKHIEHDLDTQAEDCYIAMEALCEVLH 482 (1023)
Q Consensus 403 ~r~~~~g~~g~v~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~e~~~ 482 (1023)
-+|.-|||-|+
T Consensus 212 ---------------------------------------------------------------------kLVknLFemAR 222 (439)
T KOG0739|consen 212 ---------------------------------------------------------------------KLVKNLFEMAR 222 (439)
T ss_pred ---------------------------------------------------------------------HHHHHHHHHHH
Confidence 28889999999
Q ss_pred hcCCeEEEEcCchhhhhh-ccCCccHH-HHHHHHHHHHhcCCCCEEEEecccCCCCCccccccccccccccccccCCCCc
Q 001707 483 STQPLIVYFPDSSLWLSR-AVPRCNRK-EFVRKVEEMFDQLSGPVVLICGQNKNETGPKEKEKFTMILPNFGRLAKLPLP 560 (1023)
Q Consensus 483 ~~~p~Iiff~di~~~~~~-s~~~~~~~-~~~s~l~~~~~~~~g~v~vI~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 560 (1023)
.+.|+|||+||||-+..+ +..|+.-. +|-- ++|=.|.|= |++ .
T Consensus 223 e~kPSIIFiDEiDslcg~r~enEseasRRIKT---EfLVQMqGV-----G~d---------------------------~ 267 (439)
T KOG0739|consen 223 ENKPSIIFIDEIDSLCGSRSENESEASRRIKT---EFLVQMQGV-----GND---------------------------N 267 (439)
T ss_pred hcCCcEEEeehhhhhccCCCCCchHHHHHHHH---HHHHhhhcc-----ccC---------------------------C
Confidence 999999999999976433 33333322 2222 444455541 221 1
Q ss_pred chhhhcccccCCCcchHHHHhccccEEEEcCCChHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhccCCccccccccc
Q 001707 561 LQRLTEGLKATKRSDDNEIYNLFTNVLSIHPPKEEDLLRTFNKQVEEDRRIVIYRSNLNELHKVLEDHELSCTDLLHVNT 640 (1023)
Q Consensus 561 ~~~LvIGmTNR~d~iDeaL~rrFe~~ieI~LPdee~Rl~Il~Iht~~~~~~~~~~~~v~~l~~~l~t~~~~gaDL~~Lc~ 640 (1023)
-.+||.|+||-|--+|.||+|||+.-||||||+..+|...|++|+.. ....+...|..+|+. +|-||+|+|+.-+++
T Consensus 268 ~gvLVLgATNiPw~LDsAIRRRFekRIYIPLPe~~AR~~MF~lhlG~-tp~~LT~~d~~eL~~--kTeGySGsDisivVr 344 (439)
T KOG0739|consen 268 DGVLVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARARMFKLHLGD-TPHVLTEQDFKELAR--KTEGYSGSDISIVVR 344 (439)
T ss_pred CceEEEecCCCchhHHHHHHHHhhcceeccCCcHHHhhhhheeccCC-CccccchhhHHHHHh--hcCCCCcCceEEEeh
Confidence 23788899999999999999999999999999999999999999754 455667778888887 888999999986666
Q ss_pred chhhhhhhh
Q 001707 641 DGVILTKQR 649 (1023)
Q Consensus 641 ~a~~ls~~~ 649 (1023)
++..-....
T Consensus 345 DalmePvRk 353 (439)
T KOG0739|consen 345 DALMEPVRK 353 (439)
T ss_pred hhhhhhHHH
Confidence 655434344
No 46
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.89 E-value=5.2e-21 Score=235.82 Aligned_cols=388 Identities=15% Similarity=0.208 Sum_probs=237.5
Q ss_pred HHHHHHHHHhhcCCeEEEEcCchhhhhhcc-CCccHHHHHHHHHHHHhcCCCCEEEEecccCCCCCcccccccccccccc
Q 001707 473 AMEALCEVLHSTQPLIVYFPDSSLWLSRAV-PRCNRKEFVRKVEEMFDQLSGPVVLICGQNKNETGPKEKEKFTMILPNF 551 (1023)
Q Consensus 473 ~i~~L~e~~~~~~p~Iiff~di~~~~~~s~-~~~~~~~~~s~l~~~~~~~~g~v~vI~~~~~~d~~~~~~~~~~~~~~~~ 551 (1023)
-+..+|+++.+.+|.|||||||+.++.... ..+. ....+.|+..|+ .|.+++||+||..+-
T Consensus 262 ~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~-~~~~~~L~~~l~--~g~i~~IgaTt~~e~--------------- 323 (731)
T TIGR02639 262 RLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGS-MDASNLLKPALS--SGKLRCIGSTTYEEY--------------- 323 (731)
T ss_pred HHHHHHHHHhccCCeEEEEecHHHHhccCCCCCcc-HHHHHHHHHHHh--CCCeEEEEecCHHHH---------------
Confidence 678889999888999999999999875321 1111 134455665554 588888877665330
Q ss_pred ccccCCCCcchhhhcccccCCCcchHHHHhccccEEEEcCCChHHHHHHHHHHHHHHh---hhhhhhhhHHHHHHHHhhc
Q 001707 552 GRLAKLPLPLQRLTEGLKATKRSDDNEIYNLFTNVLSIHPPKEEDLLRTFNKQVEEDR---RIVIYRSNLNELHKVLEDH 628 (1023)
Q Consensus 552 ~~~~~~~~~~~~LvIGmTNR~d~iDeaL~rrFe~~ieI~LPdee~Rl~Il~Iht~~~~---~~~~~~~~v~~l~~~l~t~ 628 (1023)
|..-.+|+||.|||. .|+|+.|+.+.+.+||+.+..+.. .....++-++.+.. .+.
T Consensus 324 ------------------~~~~~~d~al~rRf~-~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~--ls~ 382 (731)
T TIGR02639 324 ------------------KNHFEKDRALSRRFQ-KIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVE--LSA 382 (731)
T ss_pred ------------------HHHhhhhHHHHHhCc-eEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHH--hhh
Confidence 111347999999996 799999999999999998754421 11234444544444 223
Q ss_pred cCCcccccccccchhhhhhhhhhhhHhhcccccccccCCCCccCCceeeCHHHHHHHHHHhhhhhhccCCCcccccccch
Q 001707 629 ELSCTDLLHVNTDGVILTKQRAEKVVGWAKNHYLSSCSFPSVKGQRLHLPRESLEIAILRLKEQETASRKPTQNLKNLAK 708 (1023)
Q Consensus 629 ~~~gaDL~~Lc~~a~~ls~~~~~~~V~~A~~~~l~~~~~~~v~~~kv~V~~~df~~Al~~l~p~~~~~~~~~~~~~~~~~ 708 (1023)
.|-+. +.+-..|.-+ +..|....-.. + ....+..|+.+|+..++..+... ++..+..
T Consensus 383 ryi~~--r~~P~kai~l--------ld~a~a~~~~~---~-~~~~~~~v~~~~i~~~i~~~tgi---------P~~~~~~ 439 (731)
T TIGR02639 383 RYIND--RFLPDKAIDV--------IDEAGASFRLR---P-KAKKKANVSVKDIENVVAKMAHI---------PVKTVSV 439 (731)
T ss_pred ccccc--ccCCHHHHHH--------HHHhhhhhhcC---c-ccccccccCHHHHHHHHHHHhCC---------Chhhhhh
Confidence 33221 1111111100 00010000000 0 01124568899999888876422 1111221
Q ss_pred h------hhhhhhcccccCCCCCCcccccccChHHHHHHHHHHHHcccCCchhhccCCCC---CCCceEEEEcCCCChHH
Q 001707 709 D------EYESNFVSAVVPPGEIGVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLL---RPCKGILLFGPPGTGKT 779 (1023)
Q Consensus 709 ~------efe~~~~~~ii~~~e~~vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gli---~p~~gVLL~GPPGTGKT 779 (1023)
+ .++..+. ..|.|++.+++.+.+.+... +.|+. +|...+||+||+|||||
T Consensus 440 ~~~~~l~~l~~~l~-------------~~v~GQ~~ai~~l~~~i~~~--------~~g~~~~~~p~~~~lf~Gp~GvGKT 498 (731)
T TIGR02639 440 DDREKLKNLEKNLK-------------AKIFGQDEAIDSLVSSIKRS--------RAGLGNPNKPVGSFLFTGPTGVGKT 498 (731)
T ss_pred HHHHHHHHHHHHHh-------------cceeCcHHHHHHHHHHHHHH--------hcCCCCCCCCceeEEEECCCCccHH
Confidence 1 1122221 24678999999988877532 22221 34446899999999999
Q ss_pred HHHHHHHHHhCCcEEEEeccccchh-----hhhhHH-----HHHHHHHHHHhhcCCeEEEeccchhhhhccCCCchhHHH
Q 001707 780 LLAKALATEAGANFISITGSTLTSK-----WFGDAE-----KLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEAT 849 (1023)
Q Consensus 780 ~LArAIA~elg~~fi~vs~seL~s~-----~~ge~e-----~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~e~~ 849 (1023)
+||+++|..++.+++.++++++... ..|... .....+....+..+.+||||||||.+-
T Consensus 499 ~lA~~la~~l~~~~~~~d~se~~~~~~~~~lig~~~gyvg~~~~~~l~~~~~~~p~~VvllDEieka~------------ 566 (731)
T TIGR02639 499 ELAKQLAEALGVHLERFDMSEYMEKHTVSRLIGAPPGYVGFEQGGLLTEAVRKHPHCVLLLDEIEKAH------------ 566 (731)
T ss_pred HHHHHHHHHhcCCeEEEeCchhhhcccHHHHhcCCCCCcccchhhHHHHHHHhCCCeEEEEechhhcC------------
Confidence 9999999999999999999876432 122110 011223344456677999999999873
Q ss_pred HHHHHHHHhhhcCccC-------CCCceEEEEEecCCCC-------------------------CCcHHHHhhcCCceee
Q 001707 850 RRMRNEFMSAWDGLRS-------KESQKILILGATNRPF-------------------------DLDDAVIRRLPRRIYV 897 (1023)
Q Consensus 850 ~ril~~LL~~Ldgl~~-------~~~~~VlVIaTTN~p~-------------------------~Ld~aLlrRFd~~I~V 897 (1023)
..+.+.|+..|+...- ..-.+.+||+|||... .+.|+|+.||+.+|.|
T Consensus 567 ~~~~~~Ll~~ld~g~~~d~~g~~vd~~~~iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~Rid~Vi~F 646 (731)
T TIGR02639 567 PDIYNILLQVMDYATLTDNNGRKADFRNVILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRNRLDAIIHF 646 (731)
T ss_pred HHHHHHHHHhhccCeeecCCCcccCCCCCEEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHhcCCeEEEc
Confidence 2345566666664311 1224678888987531 1567888999999999
Q ss_pred cCCCHHHHHHHHHHHHhcc-------ccC---CccCHHHHHHH--ccCCcHHHHHHHHHHHHHHHHHHHH
Q 001707 898 DLPDAENRMKILRIFLAHE-------SLE---SGFQFNELANA--TEGYSGSDLKNLCIAAAYRPVQELL 955 (1023)
Q Consensus 898 ~lPd~eeR~~ILk~~L~~~-------~l~---~dvdl~~LA~~--TeGySgaDL~~L~~~Aa~~Airr~l 955 (1023)
.+.+.++..+|++..+... ++. ++..+..|+.. ...|..+.|+.+++.-...++.+.+
T Consensus 647 ~pLs~e~l~~Iv~~~L~~l~~~l~~~~~~l~i~~~a~~~La~~~~~~~~GaR~l~r~i~~~~~~~l~~~~ 716 (731)
T TIGR02639 647 NPLSEEVLEKIVQKFVDELSKQLNEKNIKLELTDDAKKYLAEKGYDEEFGARPLARVIQEEIKKPLSDEI 716 (731)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEeCHHHHHHHHHhCCCcccCchHHHHHHHHHhHHHHHHHH
Confidence 9999999999999887631 111 22234556654 3356678888888777777765543
No 47
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=9.3e-23 Score=232.64 Aligned_cols=259 Identities=18% Similarity=0.189 Sum_probs=193.8
Q ss_pred cccccccccccccchhhHHHHHHhhhccccCccchhhccccccCCCCceeeccCCChhHHHHHHHHHHHhhcCCcEEEee
Q 001707 176 KINISWDTFPYYINENTKSLLVECVGSHLKHKKFTATFGARLTSSSGRILLRSVPGTELYRERLIRALARELQVPLLVLD 255 (1023)
Q Consensus 176 ~~~vsf~~fpyylse~tk~~L~~~~~~hl~~~~~~~~~~~~l~~~~~~iLL~~~~gsE~y~e~L~kAlA~~~~a~ll~~d 255 (1023)
.=+|.|++||.. +..|+.|.+++..++-+++++ .+|.++-+.+||+|||| ...+||+||+|-+.+|.|..+-
T Consensus 147 ~~~v~~~di~gl--~~~k~~l~e~vi~p~lr~d~F----~glr~p~rglLLfGPpg--tGKtmL~~aiAsE~~atff~iS 218 (428)
T KOG0740|consen 147 LRNVGWDDIAGL--EDAKQSLKEAVILPLLRPDLF----LGLREPVRGLLLFGPPG--TGKTMLAKAIATESGATFFNIS 218 (428)
T ss_pred CCcccccCCcch--hhHHHHhhhhhhhcccchHhh----hccccccchhheecCCC--CchHHHHHHHHhhhcceEeecc
Confidence 446899999999 999999999999999999986 57999999999999999 8999999999999999987665
Q ss_pred cCCCCCCCCCCCCCCccCCCcccccccccccccccCcchhhccccccccCCCCchHHHHHHHHHHHhhccCcchHHHhhh
Q 001707 256 SSVLAPYDFADDSSDCESDNYEETSESEVEDENDASNEEEWTSSNEARTDGSDSEADMQATAEAALKKLVPFNLEELEKK 335 (1023)
Q Consensus 256 s~~l~~~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~k~~~s~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 335 (1023)
.+.|++
T Consensus 219 assLts-------------------------------------------------------------------------- 224 (428)
T KOG0740|consen 219 ASSLTS-------------------------------------------------------------------------- 224 (428)
T ss_pred HHHhhh--------------------------------------------------------------------------
Confidence 543322
Q ss_pred hcccccCCccccccccCCCCccccccccCCCeEEEeCCCcccccccceeeeccccCCCCCCCcccccCCCCCCCCcccEE
Q 001707 336 LSGELDSSSESSKSEAAEPSDTSKRLLKKGDRVKYIGPSVRVEADNRIILGKIMTSDGPKNAYTIIPDRALSSGQRGEVY 415 (1023)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gdrvk~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~g~v~ 415 (1023)
||+|.+.
T Consensus 225 ---------------------------------K~~Ge~e---------------------------------------- 231 (428)
T KOG0740|consen 225 ---------------------------------KYVGESE---------------------------------------- 231 (428)
T ss_pred ---------------------------------hccChHH----------------------------------------
Confidence 3322221
Q ss_pred eecCCcceeeeccccCCCCCCCCCCcccCCCCCCCcccccccccccccccchhhhHHHHHHHHHHHhhcCCeEEEEcCch
Q 001707 416 EVNGDRAAVILDISADNKGEGEKDDKVAEQPARPPVYWIDVKHIEHDLDTQAEDCYIAMEALCEVLHSTQPLIVYFPDSS 495 (1023)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~e~~~~~~p~Iiff~di~ 495 (1023)
-+|.+||.||+..||+|||+||||
T Consensus 232 --------------------------------------------------------K~vralf~vAr~~qPsvifidEid 255 (428)
T KOG0740|consen 232 --------------------------------------------------------KLVRALFKVARSLQPSVIFIDEID 255 (428)
T ss_pred --------------------------------------------------------HHHHHHHHHHHhcCCeEEEechhH
Confidence 288999999999999999999999
Q ss_pred hhhhhccCCccH--HHHHHHHHHHHhcCCCCEEEEecccCCCCCccccccccccccccccccCCCCcchhhhcccccCCC
Q 001707 496 LWLSRAVPRCNR--KEFVRKVEEMFDQLSGPVVLICGQNKNETGPKEKEKFTMILPNFGRLAKLPLPLQRLTEGLKATKR 573 (1023)
Q Consensus 496 ~~~~~s~~~~~~--~~~~s~l~~~~~~~~g~v~vI~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~LvIGmTNR~d 573 (1023)
.++.....+..- .++.-.++ +..++++...+ + .+||||+||||.
T Consensus 256 slls~Rs~~e~e~srr~ktefL---------iq~~~~~s~~~-----------------------d--rvlvigaTN~P~ 301 (428)
T KOG0740|consen 256 SLLSKRSDNEHESSRRLKTEFL---------LQFDGKNSAPD-----------------------D--RVLVIGATNRPW 301 (428)
T ss_pred HHHhhcCCcccccchhhhhHHH---------hhhccccCCCC-----------------------C--eEEEEecCCCch
Confidence 976553322210 11111111 12223333322 1 478899999999
Q ss_pred cchHHHHhccccEEEEcCCChHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhccCCcccccccccchhhhhhhhhhhh
Q 001707 574 SDDNEIYNLFTNVLSIHPPKEEDLLRTFNKQVEEDRRIVIYRSNLNELHKVLEDHELSCTDLLHVNTDGVILTKQRAEKV 653 (1023)
Q Consensus 574 ~iDeaL~rrFe~~ieI~LPdee~Rl~Il~Iht~~~~~~~~~~~~v~~l~~~l~t~~~~gaDL~~Lc~~a~~ls~~~~~~~ 653 (1023)
.+|+|++|||-..+||||||.++|.++|+.-+.+. .......++..|++ .|-||+|.||.+||.++++--.......
T Consensus 302 e~Dea~~Rrf~kr~yiplPd~etr~~~~~~ll~~~-~~~l~~~d~~~l~~--~Tegysgsdi~~l~kea~~~p~r~~~~~ 378 (428)
T KOG0740|consen 302 ELDEAARRRFVKRLYIPLPDYETRSLLWKQLLKEQ-PNGLSDLDISLLAK--VTEGYSGSDITALCKEAAMGPLRELGGT 378 (428)
T ss_pred HHHHHHHHHhhceeeecCCCHHHHHHHHHHHHHhC-CCCccHHHHHHHHH--HhcCcccccHHHHHHHhhcCchhhcccc
Confidence 99999999999999999999999999999988777 67778888999988 5668999999999998876543332221
Q ss_pred HhhcccccccccCCCCccCCceeeCHHHHHHHHHHhhhh
Q 001707 654 VGWAKNHYLSSCSFPSVKGQRLHLPRESLEIAILRLKEQ 692 (1023)
Q Consensus 654 V~~A~~~~l~~~~~~~v~~~kv~V~~~df~~Al~~l~p~ 692 (1023)
-........ ..-.+...||..++..++++
T Consensus 379 --~~~~~~~~~--------~~r~i~~~df~~a~~~i~~~ 407 (428)
T KOG0740|consen 379 --TDLEFIDAD--------KIRPITYPDFKNAFKNIKPS 407 (428)
T ss_pred --hhhhhcchh--------ccCCCCcchHHHHHHhhccc
Confidence 011111111 12235567899999888876
No 48
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.88 E-value=2.6e-22 Score=235.79 Aligned_cols=156 Identities=11% Similarity=0.181 Sum_probs=120.5
Q ss_pred HHHHHHHHHhhcCCeEEEEcCchhhhhhcc---CCccHHHHHHHHHHHHhcCCCCEEEEecccCCCCCcccccccccccc
Q 001707 473 AMEALCEVLHSTQPLIVYFPDSSLWLSRAV---PRCNRKEFVRKVEEMFDQLSGPVVLICGQNKNETGPKEKEKFTMILP 549 (1023)
Q Consensus 473 ~i~~L~e~~~~~~p~Iiff~di~~~~~~s~---~~~~~~~~~s~l~~~~~~~~g~v~vI~~~~~~d~~~~~~~~~~~~~~ 549 (1023)
.|..+|+.|+..+|+||||||||+++.+.. ......+++.+|+..|+....+|+||
T Consensus 306 ~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vI--------------------- 364 (489)
T CHL00195 306 RMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVV--------------------- 364 (489)
T ss_pred HHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEE---------------------
Confidence 567888999999999999999999865321 12234566777777776555555555
Q ss_pred ccccccCCCCcchhhhcccccCCCcchHHHHh--ccccEEEEcCCChHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHhh
Q 001707 550 NFGRLAKLPLPLQRLTEGLKATKRSDDNEIYN--LFTNVLSIHPPKEEDLLRTFNKQVEEDRRIVIYRSNLNELHKVLED 627 (1023)
Q Consensus 550 ~~~~~~~~~~~~~~LvIGmTNR~d~iDeaL~r--rFe~~ieI~LPdee~Rl~Il~Iht~~~~~~~~~~~~v~~l~~~l~t 627 (1023)
++||+++.||+||+| ||+..|+|++|+.++|.+||++|+.+.+.....+.+++.|+. .|
T Consensus 365 -----------------aTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~--~T 425 (489)
T CHL00195 365 -----------------ATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSK--LS 425 (489)
T ss_pred -----------------EecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHh--hc
Confidence 778888999999998 999999999999999999999998775544344566777877 78
Q ss_pred ccCCcccccccccchhhhhhhhhhhhHhhcccccccccCCCCccCCceeeCHHHHHHHHHHhhhh
Q 001707 628 HELSCTDLLHVNTDGVILTKQRAEKVVGWAKNHYLSSCSFPSVKGQRLHLPRESLEIAILRLKEQ 692 (1023)
Q Consensus 628 ~~~~gaDL~~Lc~~a~~ls~~~~~~~V~~A~~~~l~~~~~~~v~~~kv~V~~~df~~Al~~l~p~ 692 (1023)
.||+||||+.+|.++...+ +. .+ -.++.+||..|+..++|.
T Consensus 426 ~GfSGAdI~~lv~eA~~~A-----------~~------------~~-~~lt~~dl~~a~~~~~Pl 466 (489)
T CHL00195 426 NKFSGAEIEQSIIEAMYIA-----------FY------------EK-REFTTDDILLALKQFIPL 466 (489)
T ss_pred CCCCHHHHHHHHHHHHHHH-----------HH------------cC-CCcCHHHHHHHHHhcCCC
Confidence 8999999999987665422 10 01 137889999999999886
No 49
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.88 E-value=2.4e-22 Score=231.20 Aligned_cols=154 Identities=8% Similarity=0.134 Sum_probs=112.8
Q ss_pred HHHHHHHHHhhcCCeEEEEcCchhhhhhcc--CCcc---HHHHHHHHHHHHhcCC--CCEEEEecccCCCCCcccccccc
Q 001707 473 AMEALCEVLHSTQPLIVYFPDSSLWLSRAV--PRCN---RKEFVRKVEEMFDQLS--GPVVLICGQNKNETGPKEKEKFT 545 (1023)
Q Consensus 473 ~i~~L~e~~~~~~p~Iiff~di~~~~~~s~--~~~~---~~~~~s~l~~~~~~~~--g~v~vI~~~~~~d~~~~~~~~~~ 545 (1023)
.+..+|+.|+..+|+||||||||.++.... +.+. ..+++..|+..||+++ ++|
T Consensus 226 ~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v-------------------- 285 (398)
T PTZ00454 226 MVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNV-------------------- 285 (398)
T ss_pred HHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCE--------------------
Confidence 467789999999999999999999754321 1111 1233344444444433 223
Q ss_pred ccccccccccCCCCcchhhhcccccCCCcchHHHHh--ccccEEEEcCCChHHHHHHHHHHHHHHhhhhhhhhhHHHHHH
Q 001707 546 MILPNFGRLAKLPLPLQRLTEGLKATKRSDDNEIYN--LFTNVLSIHPPKEEDLLRTFNKQVEEDRRIVIYRSNLNELHK 623 (1023)
Q Consensus 546 ~~~~~~~~~~~~~~~~~~LvIGmTNR~d~iDeaL~r--rFe~~ieI~LPdee~Rl~Il~Iht~~~~~~~~~~~~v~~l~~ 623 (1023)
.+|++||++|.||+||+| ||+.+|+|++|+.++|.+||++|+.++. ...+.+++.++.
T Consensus 286 ------------------~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~--l~~dvd~~~la~ 345 (398)
T PTZ00454 286 ------------------KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMN--LSEEVDLEDFVS 345 (398)
T ss_pred ------------------EEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCC--CCcccCHHHHHH
Confidence 345889999999999998 9999999999999999999999986543 223445666655
Q ss_pred HHhhccCCcccccccccchhhhhhhhhhhhHhhcccccccccCCCCccCCceeeCHHHHHHHHHHhhh
Q 001707 624 VLEDHELSCTDLLHVNTDGVILTKQRAEKVVGWAKNHYLSSCSFPSVKGQRLHLPRESLEIAILRLKE 691 (1023)
Q Consensus 624 ~l~t~~~~gaDL~~Lc~~a~~ls~~~~~~~V~~A~~~~l~~~~~~~v~~~kv~V~~~df~~Al~~l~p 691 (1023)
.+.||+|+||.+||.+|...+..+ ++..|+.+||..|+.++..
T Consensus 346 --~t~g~sgaDI~~l~~eA~~~A~r~-----------------------~~~~i~~~df~~A~~~v~~ 388 (398)
T PTZ00454 346 --RPEKISAADIAAICQEAGMQAVRK-----------------------NRYVILPKDFEKGYKTVVR 388 (398)
T ss_pred --HcCCCCHHHHHHHHHHHHHHHHHc-----------------------CCCccCHHHHHHHHHHHHh
Confidence 788999999999998887654221 2346899999999998765
No 50
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=3.5e-22 Score=210.52 Aligned_cols=157 Identities=16% Similarity=0.228 Sum_probs=122.3
Q ss_pred HHHHHHHHHhhcCCeEEEEcCchhh----hhhccCCccHHHHHHHHHHHHhcCCCCEEEEecccCCCCCccccccccccc
Q 001707 473 AMEALCEVLHSTQPLIVYFPDSSLW----LSRAVPRCNRKEFVRKVEEMFDQLSGPVVLICGQNKNETGPKEKEKFTMIL 548 (1023)
Q Consensus 473 ~i~~L~e~~~~~~p~Iiff~di~~~----~~~s~~~~~~~~~~s~l~~~~~~~~g~v~vI~~~~~~d~~~~~~~~~~~~~ 548 (1023)
.+..||=-|+.+-|+|||+||||.+ +.++.. .. .+.-.+.+++|+.+||= -+++
T Consensus 228 mvrelfvmarehapsiifmdeidsigs~r~e~~~g-gd-sevqrtmlellnqldgf----eatk---------------- 285 (404)
T KOG0728|consen 228 MVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSG-GD-SEVQRTMLELLNQLDGF----EATK---------------- 285 (404)
T ss_pred HHHHHHHHHHhcCCceEeeecccccccccccCCCC-cc-HHHHHHHHHHHHhcccc----cccc----------------
Confidence 7889999999999999999999986 333322 22 35567888888888861 1111
Q ss_pred cccccccCCCCcchhhhcccccCCCcchHHHHh--ccccEEEEcCCChHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHh
Q 001707 549 PNFGRLAKLPLPLQRLTEGLKATKRSDDNEIYN--LFTNVLSIHPPKEEDLLRTFNKQVEEDRRIVIYRSNLNELHKVLE 626 (1023)
Q Consensus 549 ~~~~~~~~~~~~~~~LvIGmTNR~d~iDeaL~r--rFe~~ieI~LPdee~Rl~Il~Iht~~~~~~~~~~~~v~~l~~~l~ 626 (1023)
++=||=+|||.|.+|+||+| |.|++||||+|++++|++||+||-.+|. .....|+..+++ +
T Consensus 286 -------------nikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihsrkmn--l~rgi~l~kiae--k 348 (404)
T KOG0728|consen 286 -------------NIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMN--LTRGINLRKIAE--K 348 (404)
T ss_pred -------------ceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhc--hhcccCHHHHHH--h
Confidence 23366789999999999999 9999999999999999999999965543 234456778887 6
Q ss_pred hccCCcccccccccchhhhhhhhhhhhHhhcccccccccCCCCccCCceeeCHHHHHHHHHHhhh
Q 001707 627 DHELSCTDLLHVNTDGVILTKQRAEKVVGWAKNHYLSSCSFPSVKGQRLHLPRESLEIAILRLKE 691 (1023)
Q Consensus 627 t~~~~gaDL~~Lc~~a~~ls~~~~~~~V~~A~~~~l~~~~~~~v~~~kv~V~~~df~~Al~~l~p 691 (1023)
-.|-+|||+.++||+|-.+.- ..-++-|+.+||+.|+.++-.
T Consensus 349 m~gasgaevk~vcteagm~al-----------------------rerrvhvtqedfemav~kvm~ 390 (404)
T KOG0728|consen 349 MPGASGAEVKGVCTEAGMYAL-----------------------RERRVHVTQEDFEMAVAKVMQ 390 (404)
T ss_pred CCCCccchhhhhhhhhhHHHH-----------------------HHhhccccHHHHHHHHHHHHh
Confidence 678899999999999866441 234678999999999987643
No 51
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=6.5e-22 Score=237.13 Aligned_cols=158 Identities=11% Similarity=0.135 Sum_probs=122.0
Q ss_pred HHHHHHHHHhhcCCeEEEEcCchhh--hhh----ccCCccHHHHHHHHHHHHhcCCCCEEEEecccCCCCCccccccccc
Q 001707 473 AMEALCEVLHSTQPLIVYFPDSSLW--LSR----AVPRCNRKEFVRKVEEMFDQLSGPVVLICGQNKNETGPKEKEKFTM 546 (1023)
Q Consensus 473 ~i~~L~e~~~~~~p~Iiff~di~~~--~~~----s~~~~~~~~~~s~l~~~~~~~~g~v~vI~~~~~~d~~~~~~~~~~~ 546 (1023)
.|..||..|++.-|+|||+||||-. .+. .-..+-+++.++-|+..||++...--|
T Consensus 391 rvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~v------------------- 451 (774)
T KOG0731|consen 391 RVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGV------------------- 451 (774)
T ss_pred HHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcE-------------------
Confidence 6889999999999999999999986 331 123456778888899989988733222
Q ss_pred cccccccccCCCCcchhhhcccccCCCcchHHHHh--ccccEEEEcCCChHHHHHHHHHHHHHHhhhhhhhhhHHHHHHH
Q 001707 547 ILPNFGRLAKLPLPLQRLTEGLKATKRSDDNEIYN--LFTNVLSIHPPKEEDLLRTFNKQVEEDRRIVIYRSNLNELHKV 624 (1023)
Q Consensus 547 ~~~~~~~~~~~~~~~~~LvIGmTNR~d~iDeaL~r--rFe~~ieI~LPdee~Rl~Il~Iht~~~~~~~~~~~~v~~l~~~ 624 (1023)
++|+||||+|-+|+||+| |||++|.|.+||..+|.+||++|..+. ....++++.-..+
T Consensus 452 -----------------i~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~---~~~~e~~dl~~~a 511 (774)
T KOG0731|consen 452 -----------------IVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKK---KLDDEDVDLSKLA 511 (774)
T ss_pred -----------------EEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhcc---CCCcchhhHHHHH
Confidence 245899999999999999 999999999999999999999995442 2223334333345
Q ss_pred HhhccCCcccccccccchhhhhhhhhhhhHhhcccccccccCCCCccCCceeeCHHHHHHHHHHhhhh
Q 001707 625 LEDHELSCTDLLHVNTDGVILTKQRAEKVVGWAKNHYLSSCSFPSVKGQRLHLPRESLEIAILRLKEQ 692 (1023)
Q Consensus 625 l~t~~~~gaDL~~Lc~~a~~ls~~~~~~~V~~A~~~~l~~~~~~~v~~~kv~V~~~df~~Al~~l~p~ 692 (1023)
..|.||+||||..||-++++++.. .+.-.|+..+|+.|++++...
T Consensus 512 ~~t~gf~gadl~n~~neaa~~a~r-----------------------~~~~~i~~~~~~~a~~Rvi~G 556 (774)
T KOG0731|consen 512 SLTPGFSGADLANLCNEAALLAAR-----------------------KGLREIGTKDLEYAIERVIAG 556 (774)
T ss_pred hcCCCCcHHHHHhhhhHHHHHHHH-----------------------hccCccchhhHHHHHHHHhcc
Confidence 589999999999999988886622 223357788999999976653
No 52
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=4.5e-22 Score=226.40 Aligned_cols=155 Identities=12% Similarity=0.130 Sum_probs=112.4
Q ss_pred HHHHHHHHHhhcCCeEEEEcCchhhhhhccCCccH--HHHHHHHHHHHhcCCCCEEEEecccCCCCCccccccccccccc
Q 001707 473 AMEALCEVLHSTQPLIVYFPDSSLWLSRAVPRCNR--KEFVRKVEEMFDQLSGPVVLICGQNKNETGPKEKEKFTMILPN 550 (1023)
Q Consensus 473 ~i~~L~e~~~~~~p~Iiff~di~~~~~~s~~~~~~--~~~~s~l~~~~~~~~g~v~vI~~~~~~d~~~~~~~~~~~~~~~ 550 (1023)
-|..||..|++.-|.|||+||||-.=....+...| .+.++.|+..||+..-+-
T Consensus 384 RVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNe------------------------- 438 (752)
T KOG0734|consen 384 RVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNE------------------------- 438 (752)
T ss_pred HHHHHHHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCC-------------------------
Confidence 57789999999999999999999763333344342 233555666666655211
Q ss_pred cccccCCCCcchhhhcccccCCCcchHHHHh--ccccEEEEcCCChHHHHHHHHHHHHHHhhhhhh-hhhHHHHHHHHhh
Q 001707 551 FGRLAKLPLPLQRLTEGLKATKRSDDNEIYN--LFTNVLSIHPPKEEDLLRTFNKQVEEDRRIVIY-RSNLNELHKVLED 627 (1023)
Q Consensus 551 ~~~~~~~~~~~~~LvIGmTNR~d~iDeaL~r--rFe~~ieI~LPdee~Rl~Il~Iht~~~~~~~~~-~~~v~~l~~~l~t 627 (1023)
.++|||+||+||.+|+||+| |||+||.+|+||-.||.+||+.|+ .++... +.|...|+. -|
T Consensus 439 -----------GiIvigATNfpe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl---~ki~~~~~VD~~iiAR--GT 502 (752)
T KOG0734|consen 439 -----------GIIVIGATNFPEALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYL---SKIPLDEDVDPKIIAR--GT 502 (752)
T ss_pred -----------ceEEEeccCChhhhhHHhcCCCccceeEecCCCCcccHHHHHHHHH---hcCCcccCCCHhHhcc--CC
Confidence 12346999999999999999 999999999999999999999994 444443 344555655 78
Q ss_pred ccCCcccccccccchhhhhhhhhhhhHhhcccccccccCCCCccCCceeeCHHHHHHHHHHhhh
Q 001707 628 HELSCTDLLHVNTDGVILTKQRAEKVVGWAKNHYLSSCSFPSVKGQRLHLPRESLEIAILRLKE 691 (1023)
Q Consensus 628 ~~~~gaDL~~Lc~~a~~ls~~~~~~~V~~A~~~~l~~~~~~~v~~~kv~V~~~df~~Al~~l~p 691 (1023)
-||+||||..|.-.|++ +.|. ++...|++++|+-|-+++.-
T Consensus 503 ~GFsGAdLaNlVNqAAl----------kAa~-------------dga~~VtM~~LE~akDrIlM 543 (752)
T KOG0734|consen 503 PGFSGADLANLVNQAAL----------KAAV-------------DGAEMVTMKHLEFAKDRILM 543 (752)
T ss_pred CCCchHHHHHHHHHHHH----------HHHh-------------cCcccccHHHHhhhhhheee
Confidence 89999999987533332 2222 33456899999988887754
No 53
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.87 E-value=7.3e-22 Score=227.12 Aligned_cols=160 Identities=16% Similarity=0.192 Sum_probs=114.9
Q ss_pred HHHHHHHHHhhcCCeEEEEcCchhhhhhcc--CCccHHHHHHHHHHHHhcCCCCEEEEecccCCCCCccccccccccccc
Q 001707 473 AMEALCEVLHSTQPLIVYFPDSSLWLSRAV--PRCNRKEFVRKVEEMFDQLSGPVVLICGQNKNETGPKEKEKFTMILPN 550 (1023)
Q Consensus 473 ~i~~L~e~~~~~~p~Iiff~di~~~~~~s~--~~~~~~~~~s~l~~~~~~~~g~v~vI~~~~~~d~~~~~~~~~~~~~~~ 550 (1023)
.+..+|+.++..+|+||||||||.+..... ..+...++..+|..++..|+|-.
T Consensus 212 ~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~------------------------- 266 (389)
T PRK03992 212 LVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFD------------------------- 266 (389)
T ss_pred HHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccC-------------------------
Confidence 567889999999999999999999853321 11112233444444554444310
Q ss_pred cccccCCCCcchhhhcccccCCCcchHHHHh--ccccEEEEcCCChHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhc
Q 001707 551 FGRLAKLPLPLQRLTEGLKATKRSDDNEIYN--LFTNVLSIHPPKEEDLLRTFNKQVEEDRRIVIYRSNLNELHKVLEDH 628 (1023)
Q Consensus 551 ~~~~~~~~~~~~~LvIGmTNR~d~iDeaL~r--rFe~~ieI~LPdee~Rl~Il~Iht~~~~~~~~~~~~v~~l~~~l~t~ 628 (1023)
...++.||++||+++.||+||+| ||++.++|++|+.++|.+||++|+.++.- ..+.++..++. .+.
T Consensus 267 --------~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~--~~~~~~~~la~--~t~ 334 (389)
T PRK03992 267 --------PRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNL--ADDVDLEELAE--LTE 334 (389)
T ss_pred --------CCCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCC--CCcCCHHHHHH--HcC
Confidence 00012355888999999999998 99999999999999999999999755421 12345666666 788
Q ss_pred cCCcccccccccchhhhhhhhhhhhHhhcccccccccCCCCccCCceeeCHHHHHHHHHHhhhh
Q 001707 629 ELSCTDLLHVNTDGVILTKQRAEKVVGWAKNHYLSSCSFPSVKGQRLHLPRESLEIAILRLKEQ 692 (1023)
Q Consensus 629 ~~~gaDL~~Lc~~a~~ls~~~~~~~V~~A~~~~l~~~~~~~v~~~kv~V~~~df~~Al~~l~p~ 692 (1023)
||+|+||++||++|...+..+ ++-.|+.+||+.|+.++++.
T Consensus 335 g~sgadl~~l~~eA~~~a~~~-----------------------~~~~i~~~d~~~A~~~~~~~ 375 (389)
T PRK03992 335 GASGADLKAICTEAGMFAIRD-----------------------DRTEVTMEDFLKAIEKVMGK 375 (389)
T ss_pred CCCHHHHHHHHHHHHHHHHHc-----------------------CCCCcCHHHHHHHHHHHhcc
Confidence 999999999999877654221 12248899999999999876
No 54
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.86 E-value=1.2e-19 Score=222.72 Aligned_cols=388 Identities=14% Similarity=0.184 Sum_probs=235.3
Q ss_pred HHHHHHHHHHhhcCCeEEEEcCchhhhhhccCCccHHHHHHHHHHHHhcCCCCEEEEecccCCCCCcccccccccccccc
Q 001707 472 IAMEALCEVLHSTQPLIVYFPDSSLWLSRAVPRCNRKEFVRKVEEMFDQLSGPVVLICGQNKNETGPKEKEKFTMILPNF 551 (1023)
Q Consensus 472 ~~i~~L~e~~~~~~p~Iiff~di~~~~~~s~~~~~~~~~~s~l~~~~~~~~g~v~vI~~~~~~d~~~~~~~~~~~~~~~~ 551 (1023)
--+..+|+++.+.+|.|||||||+.++...........+.++|..++. .|.++||+++|..+ -.+
T Consensus 265 ~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~--~g~i~vIgATt~~E-~~~------------ 329 (758)
T PRK11034 265 KRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS--SGKIRVIGSTTYQE-FSN------------ 329 (758)
T ss_pred HHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHh--CCCeEEEecCChHH-HHH------------
Confidence 367889999988899999999999997654322233467777777775 47888887666533 000
Q ss_pred ccccCCCCcchhhhcccccCCCcchHHHHhccccEEEEcCCChHHHHHHHHHHHHHHhhh---hhhhhhHHHHHHHHhhc
Q 001707 552 GRLAKLPLPLQRLTEGLKATKRSDDNEIYNLFTNVLSIHPPKEEDLLRTFNKQVEEDRRI---VIYRSNLNELHKVLEDH 628 (1023)
Q Consensus 552 ~~~~~~~~~~~~LvIGmTNR~d~iDeaL~rrFe~~ieI~LPdee~Rl~Il~Iht~~~~~~---~~~~~~v~~l~~~l~t~ 628 (1023)
.-..|+||.|||. .|+|+.|+.+.+.+||+.+..+.... ...+.-+..... .+.
T Consensus 330 --------------------~~~~D~AL~rRFq-~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~--ls~ 386 (758)
T PRK11034 330 --------------------IFEKDRALARRFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVE--LAV 386 (758)
T ss_pred --------------------HhhccHHHHhhCc-EEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHH--Hhh
Confidence 0247999999995 89999999999999999875443322 112222222221 122
Q ss_pred cC-Cccccc----ccccchhhhhhhhhhhhHhhcccccccccCCCCccCCceeeCHHHHHHHHHHhhhhhhccCCCcccc
Q 001707 629 EL-SCTDLL----HVNTDGVILTKQRAEKVVGWAKNHYLSSCSFPSVKGQRLHLPRESLEIAILRLKEQETASRKPTQNL 703 (1023)
Q Consensus 629 ~~-~gaDL~----~Lc~~a~~ls~~~~~~~V~~A~~~~l~~~~~~~v~~~kv~V~~~df~~Al~~l~p~~~~~~~~~~~~ 703 (1023)
.| .+.-|- .|+.++.. +. + +. +. ...+-.|+.+|+...+.+.... +.
T Consensus 387 ryi~~r~lPdKaidlldea~a-----------~~--~-~~----~~-~~~~~~v~~~~i~~v~~~~tgi---------p~ 438 (758)
T PRK11034 387 KYINDRHLPDKAIDVIDEAGA-----------RA--R-LM----PV-SKRKKTVNVADIESVVARIARI---------PE 438 (758)
T ss_pred ccccCccChHHHHHHHHHHHH-----------hh--c-cC----cc-cccccccChhhHHHHHHHHhCC---------Ch
Confidence 22 222111 11111100 00 0 00 00 0112246677777666554321 11
Q ss_pred cccchhh------hhhhhcccccCCCCCCcccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCCh
Q 001707 704 KNLAKDE------YESNFVSAVVPPGEIGVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTG 777 (1023)
Q Consensus 704 ~~~~~~e------fe~~~~~~ii~~~e~~vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTG 777 (1023)
..+..++ ++..+. ..|+|++++++.|.+.+...... ... ..+|..++||+||||||
T Consensus 439 ~~~~~~~~~~l~~l~~~L~-------------~~ViGQ~~ai~~l~~~i~~~~~g---l~~--~~kp~~~~Lf~GP~GvG 500 (758)
T PRK11034 439 KSVSQSDRDTLKNLGDRLK-------------MLVFGQDKAIEALTEAIKMSRAG---LGH--EHKPVGSFLFAGPTGVG 500 (758)
T ss_pred hhhhhhHHHHHHHHHHHhc-------------ceEeCcHHHHHHHHHHHHHHhcc---ccC--CCCCcceEEEECCCCCC
Confidence 1111111 112111 24679999999999988542110 000 02445579999999999
Q ss_pred HHHHHHHHHHHhCCcEEEEeccccch-----hhhhhHHHH-----HHHHHHHHhhcCCeEEEeccchhhhhccCCCchhH
Q 001707 778 KTLLAKALATEAGANFISITGSTLTS-----KWFGDAEKL-----TKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHE 847 (1023)
Q Consensus 778 KT~LArAIA~elg~~fi~vs~seL~s-----~~~ge~e~~-----I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~e 847 (1023)
||++|+++|..++.+|+.++++++.. ..+|..... -..+....++.+.+||||||||.+.
T Consensus 501 KT~lAk~LA~~l~~~~i~id~se~~~~~~~~~LiG~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka~---------- 570 (758)
T PRK11034 501 KTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAH---------- 570 (758)
T ss_pred HHHHHHHHHHHhCCCcEEeechhhcccccHHHHcCCCCCcccccccchHHHHHHhCCCcEEEeccHhhhh----------
Confidence 99999999999999999999887642 222211000 0122233345667999999999973
Q ss_pred HHHHHHHHHHhhhcCcc-C------CCCceEEEEEecCCC-------------------------CCCcHHHHhhcCCce
Q 001707 848 ATRRMRNEFMSAWDGLR-S------KESQKILILGATNRP-------------------------FDLDDAVIRRLPRRI 895 (1023)
Q Consensus 848 ~~~ril~~LL~~Ldgl~-~------~~~~~VlVIaTTN~p-------------------------~~Ld~aLlrRFd~~I 895 (1023)
..+.+.|+..|+.-. . ..-.+++||+|||.- ..+.|+|+.|++.+|
T Consensus 571 --~~v~~~LLq~ld~G~ltd~~g~~vd~rn~iiI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~Rid~ii 648 (758)
T PRK11034 571 --PDVFNLLLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNII 648 (758)
T ss_pred --HHHHHHHHHHHhcCeeecCCCceecCCCcEEEEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHccCCEEE
Confidence 234566666666321 1 112468899999832 126689999999999
Q ss_pred eecCCCHHHHHHHHHHHHhc-------cccC---CccCHHHHHHHc--cCCcHHHHHHHHHHHHHHHHHHHH
Q 001707 896 YVDLPDAENRMKILRIFLAH-------ESLE---SGFQFNELANAT--EGYSGSDLKNLCIAAAYRPVQELL 955 (1023)
Q Consensus 896 ~V~lPd~eeR~~ILk~~L~~-------~~l~---~dvdl~~LA~~T--eGySgaDL~~L~~~Aa~~Airr~l 955 (1023)
.|++.+.++..+|+...+.. .++. ++..+..|+... ..|-.+.|+.+++.-...++.+.+
T Consensus 649 ~f~~L~~~~l~~I~~~~l~~~~~~l~~~~i~l~~~~~~~~~l~~~~~~~~~GAR~l~r~i~~~l~~~la~~i 720 (758)
T PRK11034 649 WFDHLSTDVIHQVVDKFIVELQAQLDQKGVSLEVSQEARDWLAEKGYDRAMGARPMARVIQDNLKKPLANEL 720 (758)
T ss_pred EcCCCCHHHHHHHHHHHHHHHHHHHHHCCCCceECHHHHHHHHHhCCCCCCCCchHHHHHHHHHHHHHHHHH
Confidence 99999999999999877652 1222 222245565432 245568888888777777776543
No 55
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=3.9e-22 Score=213.93 Aligned_cols=156 Identities=15% Similarity=0.210 Sum_probs=120.9
Q ss_pred HHHHHHHHHhhcCCeEEEEcCchhh----hhhccCCccHHHHHHHHHHHHhcCCCCEEEEecccCCCCCccccccccccc
Q 001707 473 AMEALCEVLHSTQPLIVYFPDSSLW----LSRAVPRCNRKEFVRKVEEMFDQLSGPVVLICGQNKNETGPKEKEKFTMIL 548 (1023)
Q Consensus 473 ~i~~L~e~~~~~~p~Iiff~di~~~----~~~s~~~~~~~~~~s~l~~~~~~~~g~v~vI~~~~~~d~~~~~~~~~~~~~ 548 (1023)
++..||.+|..+.|||+|+||||.+ ..++. . -..+|-.+++++|+.+||
T Consensus 266 lvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~S-g-gerEiQrtmLELLNQldG------------------------- 318 (440)
T KOG0726|consen 266 LVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNS-G-GEREIQRTMLELLNQLDG------------------------- 318 (440)
T ss_pred HHHHHHHHHHhcCCceEEeehhhhhccccccCCC-c-cHHHHHHHHHHHHHhccC-------------------------
Confidence 8999999999999999999999986 22211 1 224677788888888774
Q ss_pred cccccccCCCCcchhhhcccccCCCcchHHHHh--ccccEEEEcCCChHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHh
Q 001707 549 PNFGRLAKLPLPLQRLTEGLKATKRSDDNEIYN--LFTNVLSIHPPKEEDLLRTFNKQVEEDRRIVIYRSNLNELHKVLE 626 (1023)
Q Consensus 549 ~~~~~~~~~~~~~~~LvIGmTNR~d~iDeaL~r--rFe~~ieI~LPdee~Rl~Il~Iht~~~~~~~~~~~~v~~l~~~l~ 626 (1023)
|+++..+=||=+|||.+.+|+||.| |.+++|+|++||++.+..||.|||.+|. ...+++.-...+.
T Consensus 319 --------FdsrgDvKvimATnrie~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mt----l~~dVnle~li~~ 386 (440)
T KOG0726|consen 319 --------FDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMT----LAEDVNLEELIMT 386 (440)
T ss_pred --------ccccCCeEEEEecccccccCHhhcCCCccccccccCCCchhhhceeEEEeecccc----hhccccHHHHhhc
Confidence 1122233456678888999999999 9999999999999999999999998876 3444444444557
Q ss_pred hccCCcccccccccchhhhhhhhhhhhHhhcccccccccCCCCccCCceeeCHHHHHHHHHHhh
Q 001707 627 DHELSCTDLLHVNTDGVILTKQRAEKVVGWAKNHYLSSCSFPSVKGQRLHLPRESLEIAILRLK 690 (1023)
Q Consensus 627 t~~~~gaDL~~Lc~~a~~ls~~~~~~~V~~A~~~~l~~~~~~~v~~~kv~V~~~df~~Al~~l~ 690 (1023)
...++|||+.++||+|-+++-. .-++.|+++||..|.+.+-
T Consensus 387 kddlSGAdIkAictEaGllAlR-----------------------erRm~vt~~DF~ka~e~V~ 427 (440)
T KOG0726|consen 387 KDDLSGADIKAICTEAGLLALR-----------------------ERRMKVTMEDFKKAKEKVL 427 (440)
T ss_pred ccccccccHHHHHHHHhHHHHH-----------------------HHHhhccHHHHHHHHHHHH
Confidence 7799999999999998776622 2367799999999987764
No 56
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.84 E-value=6.9e-21 Score=220.99 Aligned_cols=159 Identities=18% Similarity=0.187 Sum_probs=114.1
Q ss_pred HHHHHHHHHhhcCCeEEEEcCchhhhhhcc--CCccHHHHHHHHHHHHhcCCCCEEEEecccCCCCCccccccccccccc
Q 001707 473 AMEALCEVLHSTQPLIVYFPDSSLWLSRAV--PRCNRKEFVRKVEEMFDQLSGPVVLICGQNKNETGPKEKEKFTMILPN 550 (1023)
Q Consensus 473 ~i~~L~e~~~~~~p~Iiff~di~~~~~~s~--~~~~~~~~~s~l~~~~~~~~g~v~vI~~~~~~d~~~~~~~~~~~~~~~ 550 (1023)
.+..+|+.|...+|+||||||||.++.+.. ...-...+..++..+|..|+|-.
T Consensus 264 ~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~------------------------- 318 (438)
T PTZ00361 264 LVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFD------------------------- 318 (438)
T ss_pred HHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhc-------------------------
Confidence 577889999999999999999999864321 11111233344445554454310
Q ss_pred cccccCCCCcchhhhcccccCCCcchHHHHh--ccccEEEEcCCChHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhc
Q 001707 551 FGRLAKLPLPLQRLTEGLKATKRSDDNEIYN--LFTNVLSIHPPKEEDLLRTFNKQVEEDRRIVIYRSNLNELHKVLEDH 628 (1023)
Q Consensus 551 ~~~~~~~~~~~~~LvIGmTNR~d~iDeaL~r--rFe~~ieI~LPdee~Rl~Il~Iht~~~~~~~~~~~~v~~l~~~l~t~ 628 (1023)
...++.||++||+++.+|+||+| ||+++|+|++||.++|.+||++|+.++.- ..+.+++.++. .+.
T Consensus 319 --------~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l--~~dvdl~~la~--~t~ 386 (438)
T PTZ00361 319 --------SRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTL--AEDVDLEEFIM--AKD 386 (438)
T ss_pred --------ccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCC--CcCcCHHHHHH--hcC
Confidence 00012345788899999999998 99999999999999999999999876531 12335555655 888
Q ss_pred cCCcccccccccchhhhhhhhhhhhHhhcccccccccCCCCccCCceeeCHHHHHHHHHHhhh
Q 001707 629 ELSCTDLLHVNTDGVILTKQRAEKVVGWAKNHYLSSCSFPSVKGQRLHLPRESLEIAILRLKE 691 (1023)
Q Consensus 629 ~~~gaDL~~Lc~~a~~ls~~~~~~~V~~A~~~~l~~~~~~~v~~~kv~V~~~df~~Al~~l~p 691 (1023)
||+||||.++|++|..++..+ ++..|+.+||..|+.++..
T Consensus 387 g~sgAdI~~i~~eA~~~Alr~-----------------------~r~~Vt~~D~~~A~~~v~~ 426 (438)
T PTZ00361 387 ELSGADIKAICTEAGLLALRE-----------------------RRMKVTQADFRKAKEKVLY 426 (438)
T ss_pred CCCHHHHHHHHHHHHHHHHHh-----------------------cCCccCHHHHHHHHHHHHh
Confidence 999999999999877655322 2346899999999998754
No 57
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.83 E-value=8e-21 Score=224.80 Aligned_cols=156 Identities=12% Similarity=0.166 Sum_probs=113.1
Q ss_pred HHHHHHHHHhhcCCeEEEEcCchhhhhhccC-----CccHHHHHHHHHHHHhcCCCCEEEEecccCCCCCcccccccccc
Q 001707 473 AMEALCEVLHSTQPLIVYFPDSSLWLSRAVP-----RCNRKEFVRKVEEMFDQLSGPVVLICGQNKNETGPKEKEKFTMI 547 (1023)
Q Consensus 473 ~i~~L~e~~~~~~p~Iiff~di~~~~~~s~~-----~~~~~~~~s~l~~~~~~~~g~v~vI~~~~~~d~~~~~~~~~~~~ 547 (1023)
.+..+|+.|+..+|.||||||||.+...... .....++++.|+..||++.++
T Consensus 135 ~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~----------------------- 191 (495)
T TIGR01241 135 RVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTN----------------------- 191 (495)
T ss_pred HHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCC-----------------------
Confidence 4678899999999999999999998543211 111234566666666655421
Q ss_pred ccccccccCCCCcchhhhcccccCCCcchHHHHh--ccccEEEEcCCChHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHH
Q 001707 548 LPNFGRLAKLPLPLQRLTEGLKATKRSDDNEIYN--LFTNVLSIHPPKEEDLLRTFNKQVEEDRRIVIYRSNLNELHKVL 625 (1023)
Q Consensus 548 ~~~~~~~~~~~~~~~~LvIGmTNR~d~iDeaL~r--rFe~~ieI~LPdee~Rl~Il~Iht~~~~~~~~~~~~v~~l~~~l 625 (1023)
.+++|||+||+++.||+||+| ||+++++|++|+.++|.+||+.|+.+... ..+.++..++.
T Consensus 192 -------------~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~--~~~~~l~~la~-- 254 (495)
T TIGR01241 192 -------------TGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKL--APDVDLKAVAR-- 254 (495)
T ss_pred -------------CCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCC--CcchhHHHHHH--
Confidence 112356889999999999998 99999999999999999999999754321 13445666665
Q ss_pred hhccCCcccccccccchhhhhhhhhhhhHhhcccccccccCCCCccCCceeeCHHHHHHHHHHhhh
Q 001707 626 EDHELSCTDLLHVNTDGVILTKQRAEKVVGWAKNHYLSSCSFPSVKGQRLHLPRESLEIAILRLKE 691 (1023)
Q Consensus 626 ~t~~~~gaDL~~Lc~~a~~ls~~~~~~~V~~A~~~~l~~~~~~~v~~~kv~V~~~df~~Al~~l~p 691 (1023)
.+.||+|+||+.||.++++.+..+ ++-.|+.++|..|+.++..
T Consensus 255 ~t~G~sgadl~~l~~eA~~~a~~~-----------------------~~~~i~~~~l~~a~~~~~~ 297 (495)
T TIGR01241 255 RTPGFSGADLANLLNEAALLAARK-----------------------NKTEITMNDIEEAIDRVIA 297 (495)
T ss_pred hCCCCCHHHHHHHHHHHHHHHHHc-----------------------CCCCCCHHHHHHHHHHHhc
Confidence 788999999999998765533111 1224788999999987764
No 58
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=5e-20 Score=215.23 Aligned_cols=256 Identities=23% Similarity=0.240 Sum_probs=192.4
Q ss_pred cccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEeccccchhhh
Q 001707 731 DIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEA----GANFISITGSTLTSKWF 806 (1023)
Q Consensus 731 DIgGle~vk~~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~el----g~~fi~vs~seL~s~~~ 806 (1023)
|++-+..+|++..+....| +-.+.+|||+||+|+|||.|+++++.++ -+++..++|+.+.....
T Consensus 409 d~i~~~s~kke~~n~~~sp------------v~~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~ 476 (952)
T KOG0735|consen 409 DFIQVPSYKKENANQELSP------------VFRHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSL 476 (952)
T ss_pred ceeecchhhhhhhhhhccc------------ccccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhH
Confidence 4555566666655533222 1223479999999999999999999998 46788899999998888
Q ss_pred hhHHHHHHHHHHHHhhcCCeEEEeccchhhhhccC--CCchhHHHHHHHHHHHhhhcCccCCCCceEEEEEecCCCCCCc
Q 001707 807 GDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARG--GAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPFDLD 884 (1023)
Q Consensus 807 ge~e~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~--~~~~~e~~~ril~~LL~~Ldgl~~~~~~~VlVIaTTN~p~~Ld 884 (1023)
....+.+..+|..|.+++|+||++|++|.|++... ++....... .+..++..+-......+..+.||||.+....++
T Consensus 477 e~iQk~l~~vfse~~~~~PSiIvLDdld~l~~~s~~e~~q~~~~~~-rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~ 555 (952)
T KOG0735|consen 477 EKIQKFLNNVFSEALWYAPSIIVLDDLDCLASASSNENGQDGVVSE-RLAAFLNQVIKIYLKRNRKIAVIATGQELQTLN 555 (952)
T ss_pred HHHHHHHHHHHHHHHhhCCcEEEEcchhhhhccCcccCCcchHHHH-HHHHHHHHHHHHHHccCcEEEEEEechhhhhcC
Confidence 88999999999999999999999999999987322 222233333 333444333223334466789999999999999
Q ss_pred HHHHh--hcCCceeecCCCHHHHHHHHHHHHhccccC-CccCHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001707 885 DAVIR--RLPRRIYVDLPDAENRMKILRIFLAHESLE-SGFQFNELANATEGYSGSDLKNLCIAAAYRPVQELLEEERKL 961 (1023)
Q Consensus 885 ~aLlr--RFd~~I~V~lPd~eeR~~ILk~~L~~~~l~-~dvdl~~LA~~TeGySgaDL~~L~~~Aa~~Airr~l~~e~~~ 961 (1023)
+-|.+ +|..++.++.|+..+|.+||..++++.... ...|+.-++..|+||...||..++++|.+.|+.+.+.+.
T Consensus 556 ~~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~~~~~~~~dLd~ls~~TEGy~~~DL~ifVeRai~~a~leris~~--- 632 (952)
T KOG0735|consen 556 PLLVSPLLFQIVIALPAPAVTRRKEILTTIFSKNLSDITMDDLDFLSVKTEGYLATDLVIFVERAIHEAFLERISNG--- 632 (952)
T ss_pred hhhcCccceEEEEecCCcchhHHHHHHHHHHHhhhhhhhhHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHhccC---
Confidence 98887 899899999999999999999999876522 223445599999999999999999999999995432211
Q ss_pred HHhhCCCCCCCCcCCCCHHHHHHHHHhhCCCcccchhhHHHH-HHHHHHhCCCC
Q 001707 962 FIQRGKNDAAPVLRPLKLEDFIQSKAKVGPSVAYDAASMNEL-RKWNEQYGEGG 1014 (1023)
Q Consensus 962 ~~~~~~~~~~~~~r~Lt~eDF~~Al~kv~PSvs~d~~~m~el-~kW~d~yG~~g 1014 (1023)
..-+|.++|.++++.+.|...++...-++. ..|.|++|...
T Consensus 633 ------------~klltke~f~ksL~~F~P~aLR~ik~~k~tgi~w~digg~~~ 674 (952)
T KOG0735|consen 633 ------------PKLLTKELFEKSLKDFVPLALRGIKLVKSTGIRWEDIGGLFE 674 (952)
T ss_pred ------------cccchHHHHHHHHHhcChHHhhhccccccCCCCceecccHHH
Confidence 126899999999999999876654433333 47888887543
No 59
>CHL00181 cbbX CbbX; Provisional
Probab=99.82 E-value=2.7e-19 Score=198.15 Aligned_cols=237 Identities=18% Similarity=0.264 Sum_probs=169.5
Q ss_pred ccccChHHHHHHHHHHHHcccCCchhhccCCCCC--CCceEEEEcCCCChHHHHHHHHHHHh---C----CcEEEEeccc
Q 001707 730 DDIGALEDVKKALNELVILPMRRPDLFSRGNLLR--PCKGILLFGPPGTGKTLLAKALATEA---G----ANFISITGST 800 (1023)
Q Consensus 730 dDIgGle~vk~~L~e~V~~pL~~pelf~~~gli~--p~~gVLL~GPPGTGKT~LArAIA~el---g----~~fi~vs~se 800 (1023)
.+++|++++|+++++++.+ +..+..+...|+.. +..++||+||||||||++|+++|..+ | .+++.++.++
T Consensus 23 ~~l~Gl~~vK~~i~e~~~~-~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~ 101 (287)
T CHL00181 23 EELVGLAPVKTRIREIAAL-LLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDD 101 (287)
T ss_pred HhcCCcHHHHHHHHHHHHH-HHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHH
Confidence 3799999999999998866 33445555555433 23469999999999999999999876 2 3689999999
Q ss_pred cchhhhhhHHHHHHHHHHHHhhcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhcCccCCCCceEEEEEecCCC
Q 001707 801 LTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRP 880 (1023)
Q Consensus 801 L~s~~~ge~e~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~~~~~VlVIaTTN~p 880 (1023)
+.+.+.|..+..+..+|..| .++||||||++.+...+.. ......+...|+..|+.. ...++||++++..
T Consensus 102 l~~~~~g~~~~~~~~~l~~a---~ggVLfIDE~~~l~~~~~~---~~~~~e~~~~L~~~me~~----~~~~~vI~ag~~~ 171 (287)
T CHL00181 102 LVGQYIGHTAPKTKEVLKKA---MGGVLFIDEAYYLYKPDNE---RDYGSEAIEILLQVMENQ----RDDLVVIFAGYKD 171 (287)
T ss_pred HHHHHhccchHHHHHHHHHc---cCCEEEEEccchhccCCCc---cchHHHHHHHHHHHHhcC----CCCEEEEEeCCcH
Confidence 99999998877777788776 3589999999998643321 223456667777777643 2357777777532
Q ss_pred C-----CCcHHHHhhcCCceeecCCCHHHHHHHHHHHHhccccC-CccCHHHHHHH------ccCCc-HHHHHHHHHHHH
Q 001707 881 F-----DLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLE-SGFQFNELANA------TEGYS-GSDLKNLCIAAA 947 (1023)
Q Consensus 881 ~-----~Ld~aLlrRFd~~I~V~lPd~eeR~~ILk~~L~~~~l~-~dvdl~~LA~~------TeGyS-gaDL~~L~~~Aa 947 (1023)
. .++|++.+||+..|.|++++.+++.+|+..++.+.... .+.....+... ...|. +++++++++.|.
T Consensus 172 ~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~~~~~L~~~i~~~~~~~~~GNaR~vrn~ve~~~ 251 (287)
T CHL00181 172 RMDKFYESNPGLSSRIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPEAEKALLDYIKKRMEQPLFANARSVRNALDRAR 251 (287)
T ss_pred HHHHHHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHH
Confidence 1 35699999999999999999999999999999865432 11123333332 13444 899999999999
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCCCCCcCCCCHHHHHH
Q 001707 948 YRPVQELLEEERKLFIQRGKNDAAPVLRPLKLEDFIQ 984 (1023)
Q Consensus 948 ~~Airr~l~~e~~~~~~~~~~~~~~~~r~Lt~eDF~~ 984 (1023)
.+-..|+..... .......+..|+.+||.+
T Consensus 252 ~~~~~r~~~~~~-------~~~~~~~l~~~~~~d~~~ 281 (287)
T CHL00181 252 MRQANRIFESGG-------RVLTKADLVTIEAEDILK 281 (287)
T ss_pred HHHHHHHHcCCC-------CCCCHHHHhCCCHHHHhH
Confidence 888887765321 111223455677777744
No 60
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.82 E-value=3.8e-20 Score=196.51 Aligned_cols=156 Identities=19% Similarity=0.239 Sum_probs=119.0
Q ss_pred HHHHHHHHHhhcCCeEEEEcCchhh-hhhccCC--ccHHHHHHHHHHHHhcCC-CCEEEEecccCCCCCccccccccccc
Q 001707 473 AMEALCEVLHSTQPLIVYFPDSSLW-LSRAVPR--CNRKEFVRKVEEMFDQLS-GPVVLICGQNKNETGPKEKEKFTMIL 548 (1023)
Q Consensus 473 ~i~~L~e~~~~~~p~Iiff~di~~~-~~~s~~~--~~~~~~~s~l~~~~~~~~-g~v~vI~~~~~~d~~~~~~~~~~~~~ 548 (1023)
-|..||+-|++..|.|||+||+|.+ +.|.-|+ ..-.++|+.|++.||++- +-+||
T Consensus 198 ~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVv--------------------- 256 (368)
T COG1223 198 RIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVV--------------------- 256 (368)
T ss_pred HHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceE---------------------
Confidence 6789999999999999999999996 5443332 234577888888887765 22333
Q ss_pred cccccccCCCCcchhhhcccccCCCcchHHHHhccccEEEEcCCChHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhc
Q 001707 549 PNFGRLAKLPLPLQRLTEGLKATKRSDDNEIYNLFTNVLSIHPPKEEDLLRTFNKQVEEDRRIVIYRSNLNELHKVLEDH 628 (1023)
Q Consensus 549 ~~~~~~~~~~~~~~~LvIGmTNR~d~iDeaL~rrFe~~ieI~LPdee~Rl~Il~Iht~~~~~~~~~~~~v~~l~~~l~t~ 628 (1023)
.|++||||+++|+|++.||+.+|||.||+++.|+.|+....+++- ...+.+++.++. +|+
T Consensus 257 ----------------tIaaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~P--lpv~~~~~~~~~--~t~ 316 (368)
T COG1223 257 ----------------TIAATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFP--LPVDADLRYLAA--KTK 316 (368)
T ss_pred ----------------EEeecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCC--CccccCHHHHHH--HhC
Confidence 468899999999999999999999999999999999998865543 334555777766 899
Q ss_pred cCCcccccccccchhhhhhhhhhhhHhhcccccccccCCCCccCCceeeCHHHHHHHHHHhhh
Q 001707 629 ELSCTDLLHVNTDGVILTKQRAEKVVGWAKNHYLSSCSFPSVKGQRLHLPRESLEIAILRLKE 691 (1023)
Q Consensus 629 ~~~gaDL~~Lc~~a~~ls~~~~~~~V~~A~~~~l~~~~~~~v~~~kv~V~~~df~~Al~~l~p 691 (1023)
|++|-||.. .++..|+-+.+ ..++=+|..+||+.|+++..+
T Consensus 317 g~SgRdike--------------kvlK~aLh~Ai--------~ed~e~v~~edie~al~k~r~ 357 (368)
T COG1223 317 GMSGRDIKE--------------KVLKTALHRAI--------AEDREKVEREDIEKALKKERK 357 (368)
T ss_pred CCCchhHHH--------------HHHHHHHHHHH--------HhchhhhhHHHHHHHHHhhcc
Confidence 999988853 34445544433 345567899999999986443
No 61
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=9.3e-20 Score=198.43 Aligned_cols=247 Identities=29% Similarity=0.371 Sum_probs=186.1
Q ss_pred ccCCCCCCcccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC--------
Q 001707 719 VVPPGEIGVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAG-------- 790 (1023)
Q Consensus 719 ii~~~e~~vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~elg-------- 790 (1023)
.+|..+-.--|+.++--..+|+.|..++...+.-.+.-....++...+-|||+||||||||+|++|+|+.+.
T Consensus 131 ~LPa~eF~glWEsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~ 210 (423)
T KOG0744|consen 131 YLPAAEFDGLWESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYY 210 (423)
T ss_pred eccchhhhhhHHHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccc
Confidence 344444445677877778899999998876665555444556677778899999999999999999999984
Q ss_pred -CcEEEEeccccchhhhhhHHHHHHHHHHHHhhc-----CCeEEEeccchhhhhccCC---CchhHHHHHHHHHHHhhhc
Q 001707 791 -ANFISITGSTLTSKWFGDAEKLTKALFSFASKL-----APVIIFVDEVDSLLGARGG---AFEHEATRRMRNEFMSAWD 861 (1023)
Q Consensus 791 -~~fi~vs~seL~s~~~ge~e~~I~~lF~~A~k~-----~PsIIfIDEID~L~~~r~~---~~~~e~~~ril~~LL~~Ld 861 (1023)
..++.+++..++++|++++.+.+.++|...... .-..++|||+++|...|.+ ..++...-+++|++|+++|
T Consensus 211 ~~~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlD 290 (423)
T KOG0744|consen 211 KGQLIEINSHSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLD 290 (423)
T ss_pred cceEEEEehhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHH
Confidence 357899999999999999999999999987543 2357779999999877743 2245556789999999999
Q ss_pred CccCCCCceEEEEEecCCCCCCcHHHHhhcCCceeecCCCHHHHHHHHHHHHhccc---cC---------------CccC
Q 001707 862 GLRSKESQKILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHES---LE---------------SGFQ 923 (1023)
Q Consensus 862 gl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~V~lPd~eeR~~ILk~~L~~~~---l~---------------~dvd 923 (1023)
.+.. ..+|++++|+|-.+.+|.++.+|-+-+.+|++|+...|.+|++..+...- +. .+..
T Consensus 291 rlK~--~~NvliL~TSNl~~siD~AfVDRADi~~yVG~Pt~~ai~~IlkscieEL~~~gIi~~~~~s~~~~~~i~~~~~~ 368 (423)
T KOG0744|consen 291 RLKR--YPNVLILATSNLTDSIDVAFVDRADIVFYVGPPTAEAIYEILKSCIEELISSGIILFHQRSTGVKEFIKYQKAL 368 (423)
T ss_pred Hhcc--CCCEEEEeccchHHHHHHHhhhHhhheeecCCccHHHHHHHHHHHHHHHHhcCeeeeeccchhhhHHhHhhHhH
Confidence 9954 56799999999999999999999999999999999999999999876321 10 0111
Q ss_pred HHHHHHH-ccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCcCCCCHHHHHHHHHh
Q 001707 924 FNELANA-TEGYSGSDLKNLCIAAAYRPVQELLEEERKLFIQRGKNDAAPVLRPLKLEDFIQSKAK 988 (1023)
Q Consensus 924 l~~LA~~-TeGySgaDL~~L~~~Aa~~Airr~l~~e~~~~~~~~~~~~~~~~r~Lt~eDF~~Al~k 988 (1023)
...++.. +.|.||+-|+.|=-.|...- ....+++.++|..|+-.
T Consensus 369 ~~~~~~~~~~gLSGRtlrkLP~Laha~y---------------------~~~~~v~~~~fl~al~e 413 (423)
T KOG0744|consen 369 RNILIELSTVGLSGRTLRKLPLLAHAEY---------------------FRTFTVDLSNFLLALLE 413 (423)
T ss_pred HHHHHHHhhcCCccchHhhhhHHHHHhc---------------------cCCCccChHHHHHHHHH
Confidence 2233333 36888888776643322211 11247999999888743
No 62
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=1.3e-19 Score=192.26 Aligned_cols=158 Identities=13% Similarity=0.173 Sum_probs=121.2
Q ss_pred HHHHHHHHHhhcCCeEEEEcCchhh----hhhccCCccHHHHHHHHHHHHhcCCCCEEEEecccCCCCCccccccccccc
Q 001707 473 AMEALCEVLHSTQPLIVYFPDSSLW----LSRAVPRCNRKEFVRKVEEMFDQLSGPVVLICGQNKNETGPKEKEKFTMIL 548 (1023)
Q Consensus 473 ~i~~L~e~~~~~~p~Iiff~di~~~----~~~s~~~~~~~~~~s~l~~~~~~~~g~v~vI~~~~~~d~~~~~~~~~~~~~ 548 (1023)
++..-|-.|+...|.|||+||+|.+ +.+.+... .+.-.+.+++|..+||= .
T Consensus 252 LVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GD--REVQRTMLELLNQLDGF-------s---------------- 306 (424)
T KOG0652|consen 252 LVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGD--REVQRTMLELLNQLDGF-------S---------------- 306 (424)
T ss_pred HHHHHHHHhhccCCeEEEEechhhhcccccccccccc--HHHHHHHHHHHHhhcCC-------C----------------
Confidence 6777788899999999999999987 44433332 35567888888888851 0
Q ss_pred cccccccCCCCcchhhhcccccCCCcchHHHHh--ccccEEEEcCCChHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHh
Q 001707 549 PNFGRLAKLPLPLQRLTEGLKATKRSDDNEIYN--LFTNVLSIHPPKEEDLLRTFNKQVEEDRRIVIYRSNLNELHKVLE 626 (1023)
Q Consensus 549 ~~~~~~~~~~~~~~~LvIGmTNR~d~iDeaL~r--rFe~~ieI~LPdee~Rl~Il~Iht~~~~~~~~~~~~v~~l~~~l~ 626 (1023)
+.-.+=||.+|||-|-+|+||+| |++++||||+|++++|.+|+.||-.+|. ...+.|.++|+. .
T Consensus 307 ----------s~~~vKviAATNRvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMn--v~~DvNfeELaR--s 372 (424)
T KOG0652|consen 307 ----------SDDRVKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMN--VSDDVNFEELAR--S 372 (424)
T ss_pred ----------CccceEEEeecccccccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcC--CCCCCCHHHHhh--c
Confidence 01113367899999999999999 9999999999999999999999965543 335566778877 6
Q ss_pred hccCCcccccccccchhhhhhhhhhhhHhhcccccccccCCCCccCCceeeCHHHHHHHHHHhhhh
Q 001707 627 DHELSCTDLLHVNTDGVILTKQRAEKVVGWAKNHYLSSCSFPSVKGQRLHLPRESLEIAILRLKEQ 692 (1023)
Q Consensus 627 t~~~~gaDL~~Lc~~a~~ls~~~~~~~V~~A~~~~l~~~~~~~v~~~kv~V~~~df~~Al~~l~p~ 692 (1023)
|-+|.||.+.++|.++-.+.-. .+.-.|+.+|||.++.+++..
T Consensus 373 TddFNGAQcKAVcVEAGMiALR-----------------------r~atev~heDfmegI~eVqak 415 (424)
T KOG0652|consen 373 TDDFNGAQCKAVCVEAGMIALR-----------------------RGATEVTHEDFMEGILEVQAK 415 (424)
T ss_pred ccccCchhheeeehhhhHHHHh-----------------------cccccccHHHHHHHHHHHHHh
Confidence 7788899999999887554411 233458899999999988753
No 63
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.81 E-value=1.1e-19 Score=230.25 Aligned_cols=157 Identities=10% Similarity=0.102 Sum_probs=115.4
Q ss_pred HHHHHHHHHHhhcCCeEEEEcCchhhhhhccCCccHHHHHHHHHHHHhcCCCCEEEEecccCCCCCcccccccccccccc
Q 001707 472 IAMEALCEVLHSTQPLIVYFPDSSLWLSRAVPRCNRKEFVRKVEEMFDQLSGPVVLICGQNKNETGPKEKEKFTMILPNF 551 (1023)
Q Consensus 472 ~~i~~L~e~~~~~~p~Iiff~di~~~~~~s~~~~~~~~~~s~l~~~~~~~~g~v~vI~~~~~~d~~~~~~~~~~~~~~~~ 551 (1023)
.-|..+||.|++.+|.||||||||.+-+.. +. ...++.|+..|++..+. +
T Consensus 1719 ~rIr~lFelARk~SPCIIFIDEIDaL~~~d---s~-~ltL~qLLneLDg~~~~----~---------------------- 1768 (2281)
T CHL00206 1719 FYITLQFELAKAMSPCIIWIPNIHDLNVNE---SN-YLSLGLLVNSLSRDCER----C---------------------- 1768 (2281)
T ss_pred HHHHHHHHHHHHCCCeEEEEEchhhcCCCc---cc-eehHHHHHHHhcccccc----C----------------------
Confidence 358999999999999999999999985441 11 12356666666654311 0
Q ss_pred ccccCCCCcchhhhcccccCCCcchHHHHh--ccccEEEEcCCChHHHHHHHHHHHHHHhhhhhhh--hhHHHHHHHHhh
Q 001707 552 GRLAKLPLPLQRLTEGLKATKRSDDNEIYN--LFTNVLSIHPPKEEDLLRTFNKQVEEDRRIVIYR--SNLNELHKVLED 627 (1023)
Q Consensus 552 ~~~~~~~~~~~~LvIGmTNR~d~iDeaL~r--rFe~~ieI~LPdee~Rl~Il~Iht~~~~~~~~~~--~~v~~l~~~l~t 627 (1023)
..-+++|||+|||||.||+||+| |||++|+|++|+..+|.+|+.+++ ..+...... .+++.++. .|
T Consensus 1769 -------s~~~VIVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl-~tkg~~L~~~~vdl~~LA~--~T 1838 (2281)
T CHL00206 1769 -------STRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLS-YTRGFHLEKKMFHTNGFGS--IT 1838 (2281)
T ss_pred -------CCCCEEEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHH-hhcCCCCCcccccHHHHHH--hC
Confidence 00124567999999999999999 999999999999999999999863 222222221 35677776 88
Q ss_pred ccCCcccccccccchhhhhhhhhhhhHhhcccccccccCCCCccCCceeeCHHHHHHHHHHhhh
Q 001707 628 HELSCTDLLHVNTDGVILTKQRAEKVVGWAKNHYLSSCSFPSVKGQRLHLPRESLEIAILRLKE 691 (1023)
Q Consensus 628 ~~~~gaDL~~Lc~~a~~ls~~~~~~~V~~A~~~~l~~~~~~~v~~~kv~V~~~df~~Al~~l~p 691 (1023)
.||+||||.+||.+|++++..+ ++-.|+.++|..|+.+...
T Consensus 1839 ~GfSGADLanLvNEAaliAirq-----------------------~ks~Id~~~I~~Al~Rq~~ 1879 (2281)
T CHL00206 1839 MGSNARDLVALTNEALSISITQ-----------------------KKSIIDTNTIRSALHRQTW 1879 (2281)
T ss_pred CCCCHHHHHHHHHHHHHHHHHc-----------------------CCCccCHHHHHHHHHHHHh
Confidence 9999999999999988877433 2234778889888887754
No 64
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.81 E-value=6.8e-19 Score=194.71 Aligned_cols=237 Identities=18% Similarity=0.234 Sum_probs=170.9
Q ss_pred cccChHHHHHHHHHHHHcccCCchhhccCCCCC--CCceEEEEcCCCChHHHHHHHHHHHhC-------CcEEEEecccc
Q 001707 731 DIGALEDVKKALNELVILPMRRPDLFSRGNLLR--PCKGILLFGPPGTGKTLLAKALATEAG-------ANFISITGSTL 801 (1023)
Q Consensus 731 DIgGle~vk~~L~e~V~~pL~~pelf~~~gli~--p~~gVLL~GPPGTGKT~LArAIA~elg-------~~fi~vs~seL 801 (1023)
+++|++++|+++.+++.+ +..++.+.+.|+.. |..+|||+||||||||++|+++|..+. .+|+.++++++
T Consensus 23 ~l~Gl~~vk~~i~e~~~~-~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l 101 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAAL-LLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDL 101 (284)
T ss_pred hccCHHHHHHHHHHHHHH-HHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHH
Confidence 689999999999998877 55556666555432 456899999999999999999998772 37999999999
Q ss_pred chhhhhhHHHHHHHHHHHHhhcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhcCccCCCCceEEEEEecCCC-
Q 001707 802 TSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRP- 880 (1023)
Q Consensus 802 ~s~~~ge~e~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~~~~~VlVIaTTN~p- 880 (1023)
.+.+.|..+..+..+|..| .++||||||++.+...+.. ......+.+.|+..|+.. ...++||++++..
T Consensus 102 ~~~~~g~~~~~~~~~~~~a---~~gvL~iDEi~~L~~~~~~---~~~~~~~~~~Ll~~le~~----~~~~~vI~a~~~~~ 171 (284)
T TIGR02880 102 VGQYIGHTAPKTKEILKRA---MGGVLFIDEAYYLYRPDNE---RDYGQEAIEILLQVMENQ----RDDLVVILAGYKDR 171 (284)
T ss_pred hHhhcccchHHHHHHHHHc---cCcEEEEechhhhccCCCc---cchHHHHHHHHHHHHhcC----CCCEEEEEeCCcHH
Confidence 9889898877888888876 3589999999998643321 223445566777777643 2457777776542
Q ss_pred -CC---CcHHHHhhcCCceeecCCCHHHHHHHHHHHHhccccC-CccCHHHHHHHc------cC-CcHHHHHHHHHHHHH
Q 001707 881 -FD---LDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLE-SGFQFNELANAT------EG-YSGSDLKNLCIAAAY 948 (1023)
Q Consensus 881 -~~---Ld~aLlrRFd~~I~V~lPd~eeR~~ILk~~L~~~~l~-~dvdl~~LA~~T------eG-ySgaDL~~L~~~Aa~ 948 (1023)
+. +++++.+||+..|.|++++.+++..|++.++.+.... ....+..++... +. -++++++++++.|..
T Consensus 172 ~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a~~~L~~~l~~~~~~~~~GN~R~lrn~ve~~~~ 251 (284)
T TIGR02880 172 MDSFFESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAEAEEAFADYIALRRTQPHFANARSIRNAIDRARL 251 (284)
T ss_pred HHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHH
Confidence 22 5899999999999999999999999999999875432 222233444331 22 258999999999988
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCCCCcCCCCHHHHHHH
Q 001707 949 RPVQELLEEERKLFIQRGKNDAAPVLRPLKLEDFIQS 985 (1023)
Q Consensus 949 ~Airr~l~~e~~~~~~~~~~~~~~~~r~Lt~eDF~~A 985 (1023)
+...|+..... .......+..|+.+|+..+
T Consensus 252 ~~~~r~~~~~~-------~~~~~~~~~~~~~~d~~~~ 281 (284)
T TIGR02880 252 RQANRLFCDLD-------RVLDKSDLETIDPEDLLAS 281 (284)
T ss_pred HHHHHHhcCcC-------CCCCHHHHhCCCHHHHhhc
Confidence 87777654211 1111233456778887543
No 65
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.80 E-value=5.3e-19 Score=192.88 Aligned_cols=217 Identities=18% Similarity=0.234 Sum_probs=157.0
Q ss_pred ccccccChHHHHHHHHHHHHcccCCchhhccCCCCC--CCceEEEEcCCCChHHHHHHHHHHHh-------CCcEEEEec
Q 001707 728 RFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLR--PCKGILLFGPPGTGKTLLAKALATEA-------GANFISITG 798 (1023)
Q Consensus 728 tfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gli~--p~~gVLL~GPPGTGKT~LArAIA~el-------g~~fi~vs~ 798 (1023)
.+++++|++++|+.+++++.++....... +.|... ...++||+||||||||++|+++|+.+ ..+++.+++
T Consensus 4 ~l~~~~Gl~~vk~~i~~~~~~~~~~~~~~-~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~ 82 (261)
T TIGR02881 4 ELSRMVGLDEVKALIKEIYAWIQINEKRK-EEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVER 82 (261)
T ss_pred HHHHhcChHHHHHHHHHHHHHHHHHHHHH-HcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecH
Confidence 36789999999999999987764432222 233222 23579999999999999999999875 247889999
Q ss_pred cccchhhhhhHHHHHHHHHHHHhhcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhcCccCCCCceEEEEEecC
Q 001707 799 STLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATN 878 (1023)
Q Consensus 799 seL~s~~~ge~e~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~~~~~VlVIaTTN 878 (1023)
+++.+.+.|+.+..+..+|..|. ++||||||+|.|..... .......+..|+..++.. ...+++|+++.
T Consensus 83 ~~l~~~~~g~~~~~~~~~~~~a~---~~VL~IDE~~~L~~~~~----~~~~~~~i~~Ll~~~e~~----~~~~~vila~~ 151 (261)
T TIGR02881 83 ADLVGEYIGHTAQKTREVIKKAL---GGVLFIDEAYSLARGGE----KDFGKEAIDTLVKGMEDN----RNEFVLILAGY 151 (261)
T ss_pred HHhhhhhccchHHHHHHHHHhcc---CCEEEEechhhhccCCc----cchHHHHHHHHHHHHhcc----CCCEEEEecCC
Confidence 99999999999888999998764 58999999999963211 122344566777777653 23455555543
Q ss_pred CC-----CCCcHHHHhhcCCceeecCCCHHHHHHHHHHHHhccccC-CccCHHHHHHHc---------cCCcHHHHHHHH
Q 001707 879 RP-----FDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLE-SGFQFNELANAT---------EGYSGSDLKNLC 943 (1023)
Q Consensus 879 ~p-----~~Ld~aLlrRFd~~I~V~lPd~eeR~~ILk~~L~~~~l~-~dvdl~~LA~~T---------eGySgaDL~~L~ 943 (1023)
.. ..+++++.+||+..+.++.++.+++.+|++.++...... ++..+..|++.. ..-+++.+++++
T Consensus 152 ~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~~~~gn~R~~~n~~ 231 (261)
T TIGR02881 152 SDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVKEREYKLTEEAKWKLREHLYKVDQLSSREFSNARYVRNII 231 (261)
T ss_pred cchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHhccCCCCchHHHHHHHH
Confidence 32 237889999999889999999999999999998865432 222244443321 123678999999
Q ss_pred HHHHHHHHHHHHH
Q 001707 944 IAAAYRPVQELLE 956 (1023)
Q Consensus 944 ~~Aa~~Airr~l~ 956 (1023)
+.|......|++.
T Consensus 232 e~a~~~~~~r~~~ 244 (261)
T TIGR02881 232 EKAIRRQAVRLLD 244 (261)
T ss_pred HHHHHHHHHHHhc
Confidence 9988877776654
No 66
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.80 E-value=3.7e-19 Score=171.11 Aligned_cols=130 Identities=41% Similarity=0.654 Sum_probs=116.1
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccchhhhhhHHHHHHHHHHHHhhcC-CeEEEeccchhhhhccCCCchh
Q 001707 768 ILLFGPPGTGKTLLAKALATEAGANFISITGSTLTSKWFGDAEKLTKALFSFASKLA-PVIIFVDEVDSLLGARGGAFEH 846 (1023)
Q Consensus 768 VLL~GPPGTGKT~LArAIA~elg~~fi~vs~seL~s~~~ge~e~~I~~lF~~A~k~~-PsIIfIDEID~L~~~r~~~~~~ 846 (1023)
|||+||||||||++|+++|+.++.+++.+++.++.+.+.+..+..+..+|..++... |+||||||+|.+.... .....
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~-~~~~~ 79 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKS-QPSSS 79 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHC-STSSS
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhccccc-ccccc
Confidence 799999999999999999999999999999999998889999999999999999888 9999999999999877 33355
Q ss_pred HHHHHHHHHHHhhhcCccCCCCceEEEEEecCCCCCCcHHHH-hhcCCceeecC
Q 001707 847 EATRRMRNEFMSAWDGLRSKESQKILILGATNRPFDLDDAVI-RRLPRRIYVDL 899 (1023)
Q Consensus 847 e~~~ril~~LL~~Ldgl~~~~~~~VlVIaTTN~p~~Ld~aLl-rRFd~~I~V~l 899 (1023)
.....+.+.|+..++..... ..+++||+|||.++.++++++ +||+..+.+++
T Consensus 80 ~~~~~~~~~L~~~l~~~~~~-~~~~~vI~ttn~~~~i~~~l~~~rf~~~i~~~~ 132 (132)
T PF00004_consen 80 SFEQRLLNQLLSLLDNPSSK-NSRVIVIATTNSPDKIDPALLRSRFDRRIEFPL 132 (132)
T ss_dssp HHHHHHHHHHHHHHHTTTTT-SSSEEEEEEESSGGGSCHHHHSTTSEEEEEE-S
T ss_pred cccccccceeeecccccccc-cccceeEEeeCChhhCCHhHHhCCCcEEEEcCC
Confidence 66778888999999887543 457999999999999999999 99999988863
No 67
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=1.2e-18 Score=193.81 Aligned_cols=207 Identities=32% Similarity=0.545 Sum_probs=161.8
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccchhhh
Q 001707 727 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTSKWF 806 (1023)
Q Consensus 727 vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~elg~~fi~vs~seL~s~~~ 806 (1023)
-.|++++-...+...|+.+... ..+. +.. ..|-++||+|||||||||+.|+.||..+|..+-.+.+.++.- ..
T Consensus 352 ~pl~~ViL~psLe~Rie~lA~a-TaNT----K~h-~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAP-lG 424 (630)
T KOG0742|consen 352 DPLEGVILHPSLEKRIEDLAIA-TANT----KKH-QAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAP-LG 424 (630)
T ss_pred CCcCCeecCHHHHHHHHHHHHH-hccc----ccc-cchhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCccc-cc
Confidence 3467776666666666665432 1111 111 356689999999999999999999999999998888777643 22
Q ss_pred hhHHHHHHHHHHHHhhcCC-eEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhcCccCCCCceEEEEEecCCCCCCcH
Q 001707 807 GDAEKLTKALFSFASKLAP-VIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPFDLDD 885 (1023)
Q Consensus 807 ge~e~~I~~lF~~A~k~~P-sIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~~~~~VlVIaTTN~p~~Ld~ 885 (1023)
.+.-..|+++|..|+++.. -+|||||.|.++..|.....++..+..+|.||--- | ...+.++++.+||+|.+||.
T Consensus 425 ~qaVTkiH~lFDWakkS~rGLllFIDEADAFLceRnktymSEaqRsaLNAlLfRT-G---dqSrdivLvlAtNrpgdlDs 500 (630)
T KOG0742|consen 425 AQAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRT-G---DQSRDIVLVLATNRPGDLDS 500 (630)
T ss_pred hHHHHHHHHHHHHHhhcccceEEEehhhHHHHHHhchhhhcHHHHHHHHHHHHHh-c---ccccceEEEeccCCccchhH
Confidence 3557789999999988765 48899999999999987777888888888887432 1 13456888889999999999
Q ss_pred HHHhhcCCceeecCCCHHHHHHHHHHHHhccccC-----------------------Cc----cCHHHHHHHccCCcHHH
Q 001707 886 AVIRRLPRRIYVDLPDAENRMKILRIFLAHESLE-----------------------SG----FQFNELANATEGYSGSD 938 (1023)
Q Consensus 886 aLlrRFd~~I~V~lPd~eeR~~ILk~~L~~~~l~-----------------------~d----vdl~~LA~~TeGySgaD 938 (1023)
++-+||+.+|+||+|..++|.++|..|+.++-+. .. .-+.+.|+.|+||||++
T Consensus 501 AV~DRide~veFpLPGeEERfkll~lYlnkyi~~~~~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAkkTeGfSGRE 580 (630)
T KOG0742|consen 501 AVNDRIDEVVEFPLPGEEERFKLLNLYLNKYILKPATSGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAAKKTEGFSGRE 580 (630)
T ss_pred HHHhhhhheeecCCCChHHHHHHHHHHHHHHhcCcCCCCCCchhhHHHhhhhheeeeccchHHHHHHHHHHhccCCcHHH
Confidence 9999999999999999999999999998754321 01 12578899999999999
Q ss_pred HHHHHH
Q 001707 939 LKNLCI 944 (1023)
Q Consensus 939 L~~L~~ 944 (1023)
|..|+.
T Consensus 581 iakLva 586 (630)
T KOG0742|consen 581 IAKLVA 586 (630)
T ss_pred HHHHHH
Confidence 999874
No 68
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=3.1e-19 Score=211.16 Aligned_cols=155 Identities=13% Similarity=0.193 Sum_probs=119.3
Q ss_pred HHHHHHHHHhhcCCeEEEEcCchhhhhhcc-----CCccHHHHHHHHHHHHhcCCC--CEEEEecccCCCCCcccccccc
Q 001707 473 AMEALCEVLHSTQPLIVYFPDSSLWLSRAV-----PRCNRKEFVRKVEEMFDQLSG--PVVLICGQNKNETGPKEKEKFT 545 (1023)
Q Consensus 473 ~i~~L~e~~~~~~p~Iiff~di~~~~~~s~-----~~~~~~~~~s~l~~~~~~~~g--~v~vI~~~~~~d~~~~~~~~~~ 545 (1023)
-+..|||.|+++.|.|||+||||..-+... ....+++.++.|+..||+..+ .|||
T Consensus 230 RVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gviv------------------ 291 (596)
T COG0465 230 RVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIV------------------ 291 (596)
T ss_pred HHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCceEE------------------
Confidence 466799999999999999999998633321 223344567777777888774 3344
Q ss_pred ccccccccccCCCCcchhhhcccccCCCcchHHHHh--ccccEEEEcCCChHHHHHHHHHHHHHHhhhhhhhhhHHHHHH
Q 001707 546 MILPNFGRLAKLPLPLQRLTEGLKATKRSDDNEIYN--LFTNVLSIHPPKEEDLLRTFNKQVEEDRRIVIYRSNLNELHK 623 (1023)
Q Consensus 546 ~~~~~~~~~~~~~~~~~~LvIGmTNR~d~iDeaL~r--rFe~~ieI~LPdee~Rl~Il~Iht~~~~~~~~~~~~v~~l~~ 623 (1023)
|++|||||-+|+||+| ||++++.|++||-.+|.+|++.|+.+ .+...+.++..++.
T Consensus 292 --------------------iaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~--~~l~~~Vdl~~iAr 349 (596)
T COG0465 292 --------------------IAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKN--KPLAEDVDLKKIAR 349 (596)
T ss_pred --------------------EecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhc--CCCCCcCCHHHHhh
Confidence 4789999999999999 99999999999999999999999532 22223445555555
Q ss_pred HHhhccCCcccccccccchhhhhhhhhhhhHhhcccccccccCCCCccCCceeeCHHHHHHHHHHhhhh
Q 001707 624 VLEDHELSCTDLLHVNTDGVILTKQRAEKVVGWAKNHYLSSCSFPSVKGQRLHLPRESLEIAILRLKEQ 692 (1023)
Q Consensus 624 ~l~t~~~~gaDL~~Lc~~a~~ls~~~~~~~V~~A~~~~l~~~~~~~v~~~kv~V~~~df~~Al~~l~p~ 692 (1023)
.|-||+||||..|+-+|++++.. .++..|++.+|..|++++.-.
T Consensus 350 --~tpGfsGAdL~nl~NEAal~aar-----------------------~n~~~i~~~~i~ea~drv~~G 393 (596)
T COG0465 350 --GTPGFSGADLANLLNEAALLAAR-----------------------RNKKEITMRDIEEAIDRVIAG 393 (596)
T ss_pred --hCCCcccchHhhhHHHHHHHHHH-----------------------hcCeeEeccchHHHHHHHhcC
Confidence 89999999999999888876622 335568899999999988653
No 69
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.79 E-value=3.5e-19 Score=209.58 Aligned_cols=123 Identities=13% Similarity=0.159 Sum_probs=90.4
Q ss_pred HHHHHHHHHhh----cCCeEEEEcCchhhhhhcc---CCccHHHHHHHHHHHHhcCC--CCEEEEecccCCCCCcccccc
Q 001707 473 AMEALCEVLHS----TQPLIVYFPDSSLWLSRAV---PRCNRKEFVRKVEEMFDQLS--GPVVLICGQNKNETGPKEKEK 543 (1023)
Q Consensus 473 ~i~~L~e~~~~----~~p~Iiff~di~~~~~~s~---~~~~~~~~~s~l~~~~~~~~--g~v~vI~~~~~~d~~~~~~~~ 543 (1023)
.+..+|+.|+. .+|+||||||+|.++.... .......+++.|+..||++. ++|+|
T Consensus 273 ~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~~~ViV---------------- 336 (512)
T TIGR03689 273 QIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESLDNVIV---------------- 336 (512)
T ss_pred HHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccCCceEE----------------
Confidence 45567777765 4899999999999864321 12233466778888777765 34444
Q ss_pred ccccccccccccCCCCcchhhhcccccCCCcchHHHHh--ccccEEEEcCCChHHHHHHHHHHHHHHhhhhhhhhhHHHH
Q 001707 544 FTMILPNFGRLAKLPLPLQRLTEGLKATKRSDDNEIYN--LFTNVLSIHPPKEEDLLRTFNKQVEEDRRIVIYRSNLNEL 621 (1023)
Q Consensus 544 ~~~~~~~~~~~~~~~~~~~~LvIGmTNR~d~iDeaL~r--rFe~~ieI~LPdee~Rl~Il~Iht~~~~~~~~~~~~v~~l 621 (1023)
||+||++++||+||+| ||+++|+|++|+.++|.+||++|+..... ...+
T Consensus 337 ----------------------I~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~l~---l~~~---- 387 (512)
T TIGR03689 337 ----------------------IGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTDSLP---LDAD---- 387 (512)
T ss_pred ----------------------EeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhccCC---chHH----
Confidence 5889999999999999 99999999999999999999999754211 1222
Q ss_pred HHHHhhccCCcccccccccch
Q 001707 622 HKVLEDHELSCTDLLHVNTDG 642 (1023)
Q Consensus 622 ~~~l~t~~~~gaDL~~Lc~~a 642 (1023)
+....|+.++++.++|.++
T Consensus 388 --l~~~~g~~~a~~~al~~~a 406 (512)
T TIGR03689 388 --LAEFDGDREATAAALIQRA 406 (512)
T ss_pred --HHHhcCCCHHHHHHHHHHH
Confidence 2235688888888887654
No 70
>CHL00176 ftsH cell division protein; Validated
Probab=99.78 E-value=4.6e-19 Score=214.28 Aligned_cols=156 Identities=15% Similarity=0.211 Sum_probs=111.8
Q ss_pred HHHHHHHHHhhcCCeEEEEcCchhhhhhcc---C--CccHHHHHHHHHHHHhcCCCCEEEEecccCCCCCcccccccccc
Q 001707 473 AMEALCEVLHSTQPLIVYFPDSSLWLSRAV---P--RCNRKEFVRKVEEMFDQLSGPVVLICGQNKNETGPKEKEKFTMI 547 (1023)
Q Consensus 473 ~i~~L~e~~~~~~p~Iiff~di~~~~~~s~---~--~~~~~~~~s~l~~~~~~~~g~v~vI~~~~~~d~~~~~~~~~~~~ 547 (1023)
.+..+|+.|+...|.||||||||.+.++.. + .....+.+..|+..||+..++
T Consensus 263 ~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~----------------------- 319 (638)
T CHL00176 263 RVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGN----------------------- 319 (638)
T ss_pred HHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCC-----------------------
Confidence 467789999999999999999999854311 1 111223444455545543321
Q ss_pred ccccccccCCCCcchhhhcccccCCCcchHHHHh--ccccEEEEcCCChHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHH
Q 001707 548 LPNFGRLAKLPLPLQRLTEGLKATKRSDDNEIYN--LFTNVLSIHPPKEEDLLRTFNKQVEEDRRIVIYRSNLNELHKVL 625 (1023)
Q Consensus 548 ~~~~~~~~~~~~~~~~LvIGmTNR~d~iDeaL~r--rFe~~ieI~LPdee~Rl~Il~Iht~~~~~~~~~~~~v~~l~~~l 625 (1023)
-++++||+||+++.+|+||+| ||+++++|++|+.++|.+||+.|+.+ .....+.++..++.
T Consensus 320 -------------~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~--~~~~~d~~l~~lA~-- 382 (638)
T CHL00176 320 -------------KGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARN--KKLSPDVSLELIAR-- 382 (638)
T ss_pred -------------CCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhh--cccchhHHHHHHHh--
Confidence 012356889999999999998 99999999999999999999999765 22223445556655
Q ss_pred hhccCCcccccccccchhhhhhhhhhhhHhhcccccccccCCCCccCCceeeCHHHHHHHHHHhhh
Q 001707 626 EDHELSCTDLLHVNTDGVILTKQRAEKVVGWAKNHYLSSCSFPSVKGQRLHLPRESLEIAILRLKE 691 (1023)
Q Consensus 626 ~t~~~~gaDL~~Lc~~a~~ls~~~~~~~V~~A~~~~l~~~~~~~v~~~kv~V~~~df~~Al~~l~p 691 (1023)
.+.||+|+||+.||.++++.+..+ ++-.|+.++|..|+.++..
T Consensus 383 ~t~G~sgaDL~~lvneAal~a~r~-----------------------~~~~It~~dl~~Ai~rv~~ 425 (638)
T CHL00176 383 RTPGFSGADLANLLNEAAILTARR-----------------------KKATITMKEIDTAIDRVIA 425 (638)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHh-----------------------CCCCcCHHHHHHHHHHHHh
Confidence 788999999999988776654211 1224788999999988753
No 71
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=2.9e-19 Score=190.01 Aligned_cols=158 Identities=12% Similarity=0.116 Sum_probs=113.8
Q ss_pred HHHHHHHHHhhcCCeEEEEcCchhh----hhhccCCccHHHHHHHHHHHHhcCCCCEEEEecccCCCCCccccccccccc
Q 001707 473 AMEALCEVLHSTQPLIVYFPDSSLW----LSRAVPRCNRKEFVRKVEEMFDQLSGPVVLICGQNKNETGPKEKEKFTMIL 548 (1023)
Q Consensus 473 ~i~~L~e~~~~~~p~Iiff~di~~~----~~~s~~~~~~~~~~s~l~~~~~~~~g~v~vI~~~~~~d~~~~~~~~~~~~~ 548 (1023)
.+..|||-|+.....||||||||.+ |.-.... -++.-.+.++++..+||
T Consensus 258 mvrelf~martkkaciiffdeidaiggarfddg~gg--dnevqrtmleli~qldg------------------------- 310 (435)
T KOG0729|consen 258 MVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGG--DNEVQRTMLELINQLDG------------------------- 310 (435)
T ss_pred HHHHHHHHhcccceEEEEeeccccccCccccCCCCC--cHHHHHHHHHHHHhccC-------------------------
Confidence 7889999999999999999999975 2211111 13555566666555552
Q ss_pred cccccccCCCCcchhhhcccccCCCcchHHHHh--ccccEEEEcCCChHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHh
Q 001707 549 PNFGRLAKLPLPLQRLTEGLKATKRSDDNEIYN--LFTNVLSIHPPKEEDLLRTFNKQVEEDRRIVIYRSNLNELHKVLE 626 (1023)
Q Consensus 549 ~~~~~~~~~~~~~~~LvIGmTNR~d~iDeaL~r--rFe~~ieI~LPdee~Rl~Il~Iht~~~~~~~~~~~~v~~l~~~l~ 626 (1023)
++-++++-|.=+|||||-+|+||+| |+++++||.|||-|||.+||+||++.|.- ..+.-.+.|+. .
T Consensus 311 --------fdprgnikvlmatnrpdtldpallrpgrldrkvef~lpdlegrt~i~kihaksmsv--erdir~ellar--l 378 (435)
T KOG0729|consen 311 --------FDPRGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSV--ERDIRFELLAR--L 378 (435)
T ss_pred --------CCCCCCeEEEeecCCCCCcCHhhcCCcccccceeccCCcccccceeEEEecccccc--ccchhHHHHHh--h
Confidence 2233333344579999999999999 99999999999999999999999765531 11112445555 5
Q ss_pred hccCCcccccccccchhhhhhhhhhhhHhhcccccccccCCCCccCCceeeCHHHHHHHHHHhhhh
Q 001707 627 DHELSCTDLLHVNTDGVILTKQRAEKVVGWAKNHYLSSCSFPSVKGQRLHLPRESLEIAILRLKEQ 692 (1023)
Q Consensus 627 t~~~~gaDL~~Lc~~a~~ls~~~~~~~V~~A~~~~l~~~~~~~v~~~kv~V~~~df~~Al~~l~p~ 692 (1023)
-.|-.||||+.+||+|-.+.+..- +-..+-+||..|+++++..
T Consensus 379 cpnstgaeirsvcteagmfairar-----------------------rk~atekdfl~av~kvvkg 421 (435)
T KOG0729|consen 379 CPNSTGAEIRSVCTEAGMFAIRAR-----------------------RKVATEKDFLDAVNKVVKG 421 (435)
T ss_pred CCCCcchHHHHHHHHhhHHHHHHH-----------------------hhhhhHHHHHHHHHHHHHH
Confidence 678899999999999877664321 1235678999999998764
No 72
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=8.1e-19 Score=185.52 Aligned_cols=159 Identities=11% Similarity=0.166 Sum_probs=111.6
Q ss_pred HHHHHHHHHhhcCCeEEEEcCchhhhhhc--cCCccHHHHHHHHHHHHhcCCCCEEEEecccCCCCCccccccccccccc
Q 001707 473 AMEALCEVLHSTQPLIVYFPDSSLWLSRA--VPRCNRKEFVRKVEEMFDQLSGPVVLICGQNKNETGPKEKEKFTMILPN 550 (1023)
Q Consensus 473 ~i~~L~e~~~~~~p~Iiff~di~~~~~~s--~~~~~~~~~~s~l~~~~~~~~g~v~vI~~~~~~d~~~~~~~~~~~~~~~ 550 (1023)
.+..+|..|+.+.|+|||+||||.+-... .|-.--.+.-..|.++|..|||
T Consensus 236 mvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdg--------------------------- 288 (408)
T KOG0727|consen 236 MVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDG--------------------------- 288 (408)
T ss_pred HHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccC---------------------------
Confidence 67778999999999999999999862211 1222223444456666666664
Q ss_pred cccccCCCCcchhhhcccccCCCcchHHHHh--ccccEEEEcCCChHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhc
Q 001707 551 FGRLAKLPLPLQRLTEGLKATKRSDDNEIYN--LFTNVLSIHPPKEEDLLRTFNKQVEEDRRIVIYRSNLNELHKVLEDH 628 (1023)
Q Consensus 551 ~~~~~~~~~~~~~LvIGmTNR~d~iDeaL~r--rFe~~ieI~LPdee~Rl~Il~Iht~~~~~~~~~~~~v~~l~~~l~t~ 628 (1023)
++..-++=||=+|||.|-+|+||+| |++++|||||||--.++-+|..-|.+|.- .++++.-..+.+--
T Consensus 289 ------fdq~~nvkvimatnradtldpallrpgrldrkiefplpdrrqkrlvf~titskm~l----s~~vdle~~v~rpd 358 (408)
T KOG0727|consen 289 ------FDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNL----SDEVDLEDLVARPD 358 (408)
T ss_pred ------cCcccceEEEEecCcccccCHhhcCCccccccccCCCCchhhhhhhHHhhhhcccC----CcccCHHHHhcCcc
Confidence 1222233456789999999999999 99999999999999888899887776642 22333223344556
Q ss_pred cCCcccccccccchhhhhhhhhhhhHhhcccccccccCCCCccCCceeeCHHHHHHHHHHhhh
Q 001707 629 ELSCTDLLHVNTDGVILTKQRAEKVVGWAKNHYLSSCSFPSVKGQRLHLPRESLEIAILRLKE 691 (1023)
Q Consensus 629 ~~~gaDL~~Lc~~a~~ls~~~~~~~V~~A~~~~l~~~~~~~v~~~kv~V~~~df~~Al~~l~p 691 (1023)
.++|||+.++|.++-+.. +..++..|..+||+.|....+.
T Consensus 359 kis~adi~aicqeagm~a-----------------------vr~nryvvl~kd~e~ay~~~vk 398 (408)
T KOG0727|consen 359 KISGADINAICQEAGMLA-----------------------VRENRYVVLQKDFEKAYKTVVK 398 (408)
T ss_pred ccchhhHHHHHHHHhHHH-----------------------HHhcceeeeHHHHHHHHHhhcC
Confidence 789999999997765543 2344556788999999876554
No 73
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.76 E-value=1.5e-18 Score=197.99 Aligned_cols=152 Identities=13% Similarity=0.185 Sum_probs=108.2
Q ss_pred HHHHHHHHHhhcCCeEEEEcCchhhhhhcc--CCcc---HHHHHHHHHHHHhcCC--CCEEEEecccCCCCCcccccccc
Q 001707 473 AMEALCEVLHSTQPLIVYFPDSSLWLSRAV--PRCN---RKEFVRKVEEMFDQLS--GPVVLICGQNKNETGPKEKEKFT 545 (1023)
Q Consensus 473 ~i~~L~e~~~~~~p~Iiff~di~~~~~~s~--~~~~---~~~~~s~l~~~~~~~~--g~v~vI~~~~~~d~~~~~~~~~~ 545 (1023)
.+..+|+.++..+|.||||||+|.+..... ..+. ..+.+..+...|++++ ++|.|
T Consensus 203 ~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~v------------------ 264 (364)
T TIGR01242 203 LVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKV------------------ 264 (364)
T ss_pred HHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEE------------------
Confidence 466788888889999999999999854321 1111 1122333333344442 34444
Q ss_pred ccccccccccCCCCcchhhhcccccCCCcchHHHHh--ccccEEEEcCCChHHHHHHHHHHHHHHhhhhhhhhhHHHHHH
Q 001707 546 MILPNFGRLAKLPLPLQRLTEGLKATKRSDDNEIYN--LFTNVLSIHPPKEEDLLRTFNKQVEEDRRIVIYRSNLNELHK 623 (1023)
Q Consensus 546 ~~~~~~~~~~~~~~~~~~LvIGmTNR~d~iDeaL~r--rFe~~ieI~LPdee~Rl~Il~Iht~~~~~~~~~~~~v~~l~~ 623 (1023)
|++||+++.+|++|+| ||++.++|++|+.++|.+||++|+.++.. ..+.+++.++.
T Consensus 265 --------------------I~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l--~~~~~~~~la~ 322 (364)
T TIGR01242 265 --------------------IAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKL--AEDVDLEAIAK 322 (364)
T ss_pred --------------------EEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCC--CccCCHHHHHH
Confidence 4778888899999998 99999999999999999999999755431 12245667766
Q ss_pred HHhhccCCcccccccccchhhhhhhhhhhhHhhcccccccccCCCCccCCceeeCHHHHHHHHHHh
Q 001707 624 VLEDHELSCTDLLHVNTDGVILTKQRAEKVVGWAKNHYLSSCSFPSVKGQRLHLPRESLEIAILRL 689 (1023)
Q Consensus 624 ~l~t~~~~gaDL~~Lc~~a~~ls~~~~~~~V~~A~~~~l~~~~~~~v~~~kv~V~~~df~~Al~~l 689 (1023)
.+.||+|+||.++|++|...+..+ ++-.|+.+||..|+.++
T Consensus 323 --~t~g~sg~dl~~l~~~A~~~a~~~-----------------------~~~~i~~~d~~~a~~~~ 363 (364)
T TIGR01242 323 --MTEGASGADLKAICTEAGMFAIRE-----------------------ERDYVTMDDFIKAVEKV 363 (364)
T ss_pred --HcCCCCHHHHHHHHHHHHHHHHHh-----------------------CCCccCHHHHHHHHHHh
Confidence 778999999999998877654221 23358999999998865
No 74
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=1.5e-18 Score=188.34 Aligned_cols=155 Identities=14% Similarity=0.145 Sum_probs=117.8
Q ss_pred HHHHHHHHHhhcCCeEEEEcCchhhhhh--ccCCccHHHHHHHHHHHHhcCC-----CCEEEEecccCCCCCcccccccc
Q 001707 473 AMEALCEVLHSTQPLIVYFPDSSLWLSR--AVPRCNRKEFVRKVEEMFDQLS-----GPVVLICGQNKNETGPKEKEKFT 545 (1023)
Q Consensus 473 ~i~~L~e~~~~~~p~Iiff~di~~~~~~--s~~~~~~~~~~s~l~~~~~~~~-----g~v~vI~~~~~~d~~~~~~~~~~ 545 (1023)
+|..-|..|+.++|.|||+||||-.-.+ +..-+.-..+..||-+++++|+ |+|=+|
T Consensus 213 lIRemf~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~I----------------- 275 (388)
T KOG0651|consen 213 LIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLHRVKTI----------------- 275 (388)
T ss_pred HHHHHHHHHhhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhcccccEE-----------------
Confidence 8889999999999999999999997433 2222334566888889999888 455555
Q ss_pred ccccccccccCCCCcchhhhcccccCCCcchHHHHh--ccccEEEEcCCChHHHHHHHHHHHHHHhhhhhhhhhHHHHHH
Q 001707 546 MILPNFGRLAKLPLPLQRLTEGLKATKRSDDNEIYN--LFTNVLSIHPPKEEDLLRTFNKQVEEDRRIVIYRSNLNELHK 623 (1023)
Q Consensus 546 ~~~~~~~~~~~~~~~~~~LvIGmTNR~d~iDeaL~r--rFe~~ieI~LPdee~Rl~Il~Iht~~~~~~~~~~~~v~~l~~ 623 (1023)
=+|||||-+|+||+| |+|+.++||||++-+|+.|++||..........+ -+.+.+
T Consensus 276 ---------------------matNrpdtLdpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~Geid--~eaivK 332 (388)
T KOG0651|consen 276 ---------------------MATNRPDTLDPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHGEID--DEAILK 332 (388)
T ss_pred ---------------------EecCCccccchhhcCCccccceeccCCcchhhceeeEeecccccccccccc--HHHHHH
Confidence 356777889999998 9999999999999999999999977665555554 223333
Q ss_pred HHhhccCCcccccccccchhhhhhhhhhhhHhhcccccccccCCCCccCCceeeCHHHHHHHHHHhhhh
Q 001707 624 VLEDHELSCTDLLHVNTDGVILTKQRAEKVVGWAKNHYLSSCSFPSVKGQRLHLPRESLEIAILRLKEQ 692 (1023)
Q Consensus 624 ~l~t~~~~gaDL~~Lc~~a~~ls~~~~~~~V~~A~~~~l~~~~~~~v~~~kv~V~~~df~~Al~~l~p~ 692 (1023)
-.-+|.|||++..||++-.++. ...+..+-.+||+.++.++...
T Consensus 333 --~~d~f~gad~rn~~tEag~Fa~-----------------------~~~~~~vl~Ed~~k~vrk~~~~ 376 (388)
T KOG0651|consen 333 --LVDGFNGADLRNVCTEAGMFAI-----------------------PEERDEVLHEDFMKLVRKQADA 376 (388)
T ss_pred --HHhccChHHHhhhccccccccc-----------------------chhhHHHhHHHHHHHHHHHHHH
Confidence 4457889999999998766541 2334556779999998877553
No 75
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.74 E-value=4.8e-18 Score=206.73 Aligned_cols=157 Identities=10% Similarity=0.118 Sum_probs=116.1
Q ss_pred HHHHHHHHHhhcCCeEEEEcCchhhhhhccC-----CccHHHHHHHHHHHHhcCCCCEEEEecccCCCCCcccccccccc
Q 001707 473 AMEALCEVLHSTQPLIVYFPDSSLWLSRAVP-----RCNRKEFVRKVEEMFDQLSGPVVLICGQNKNETGPKEKEKFTMI 547 (1023)
Q Consensus 473 ~i~~L~e~~~~~~p~Iiff~di~~~~~~s~~-----~~~~~~~~s~l~~~~~~~~g~v~vI~~~~~~d~~~~~~~~~~~~ 547 (1023)
.+..+|+.++..+|.||||||||.+..+... ...+.++++.|+..||+..++-
T Consensus 232 ~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~---------------------- 289 (644)
T PRK10733 232 RVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNE---------------------- 289 (644)
T ss_pred HHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCC----------------------
Confidence 4567888899999999999999998543211 1123456666666666654310
Q ss_pred ccccccccCCCCcchhhhcccccCCCcchHHHHh--ccccEEEEcCCChHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHH
Q 001707 548 LPNFGRLAKLPLPLQRLTEGLKATKRSDDNEIYN--LFTNVLSIHPPKEEDLLRTFNKQVEEDRRIVIYRSNLNELHKVL 625 (1023)
Q Consensus 548 ~~~~~~~~~~~~~~~~LvIGmTNR~d~iDeaL~r--rFe~~ieI~LPdee~Rl~Il~Iht~~~~~~~~~~~~v~~l~~~l 625 (1023)
.+++||+||+|+.||+||+| ||+++++|++||.++|.+||+.|+.+.. ...+.++..++.
T Consensus 290 --------------~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~--l~~~~d~~~la~-- 351 (644)
T PRK10733 290 --------------GIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVP--LAPDIDAAIIAR-- 351 (644)
T ss_pred --------------CeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCC--CCCcCCHHHHHh--
Confidence 13456899999999999999 9999999999999999999999975532 223445556665
Q ss_pred hhccCCcccccccccchhhhhhhhhhhhHhhcccccccccCCCCccCCceeeCHHHHHHHHHHhhhh
Q 001707 626 EDHELSCTDLLHVNTDGVILTKQRAEKVVGWAKNHYLSSCSFPSVKGQRLHLPRESLEIAILRLKEQ 692 (1023)
Q Consensus 626 ~t~~~~gaDL~~Lc~~a~~ls~~~~~~~V~~A~~~~l~~~~~~~v~~~kv~V~~~df~~Al~~l~p~ 692 (1023)
.+.||+||||..||.+|++.... .++-.|+..||..|+.++.+.
T Consensus 352 ~t~G~sgadl~~l~~eAa~~a~r-----------------------~~~~~i~~~d~~~a~~~v~~g 395 (644)
T PRK10733 352 GTPGFSGADLANLVNEAALFAAR-----------------------GNKRVVSMVEFEKAKDKIMMG 395 (644)
T ss_pred hCCCCCHHHHHHHHHHHHHHHHH-----------------------cCCCcccHHHHHHHHHHHhcc
Confidence 78899999999999888775421 123357889999999887653
No 76
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.74 E-value=2.2e-15 Score=188.55 Aligned_cols=207 Identities=19% Similarity=0.261 Sum_probs=130.1
Q ss_pred cccccChHHHHHHHHHHHHcccCCchhhccCCCC---CCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccc
Q 001707 729 FDDIGALEDVKKALNELVILPMRRPDLFSRGNLL---RPCKGILLFGPPGTGKTLLAKALATEA---GANFISITGSTLT 802 (1023)
Q Consensus 729 fdDIgGle~vk~~L~e~V~~pL~~pelf~~~gli---~p~~gVLL~GPPGTGKT~LArAIA~el---g~~fi~vs~seL~ 802 (1023)
...|+|.+.+...+...+... +.|+. +|...+||+||+|||||++|++||..+ +.+|+.++++++.
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~--------~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~ 638 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRS--------RAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFM 638 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHH--------HhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhh
Confidence 446889999999998888542 11111 233468999999999999999999987 5679999988764
Q ss_pred hhh-----hhhHHHH----HHHHHHH-HhhcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhcCcc-C------
Q 001707 803 SKW-----FGDAEKL----TKALFSF-ASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLR-S------ 865 (1023)
Q Consensus 803 s~~-----~ge~e~~----I~~lF~~-A~k~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~-~------ 865 (1023)
... +|..... -...+.. .+..+.+|||||||+.+- ..+.+.|+..++.-. .
T Consensus 639 ~~~~~~~LiG~~pgy~g~~~~g~l~~~v~~~p~~vLllDEieka~------------~~v~~~Ll~ile~g~l~d~~gr~ 706 (857)
T PRK10865 639 EKHSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAH------------PDVFNILLQVLDDGRLTDGQGRT 706 (857)
T ss_pred hhhhHHHHhCCCCcccccchhHHHHHHHHhCCCCeEEEeehhhCC------------HHHHHHHHHHHhhCceecCCceE
Confidence 321 1110000 0112223 334455899999999762 223445555554211 0
Q ss_pred CCCceEEEEEecCCCC-------------------------CCcHHHHhhcCCceeecCCCHHHHHHHHHHHHhcc----
Q 001707 866 KESQKILILGATNRPF-------------------------DLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHE---- 916 (1023)
Q Consensus 866 ~~~~~VlVIaTTN~p~-------------------------~Ld~aLlrRFd~~I~V~lPd~eeR~~ILk~~L~~~---- 916 (1023)
..-.+.+||+|||... .+.|+|+.|++.++.+.+++.+....|++.++...
T Consensus 707 vd~rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELlnRld~iivF~PL~~edl~~Iv~~~L~~l~~rl 786 (857)
T PRK10865 707 VDFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLQRLYKRL 786 (857)
T ss_pred EeecccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHHhCCeeEecCCCCHHHHHHHHHHHHHHHHHHH
Confidence 1123567888998631 24578899999999999999999999988877642
Q ss_pred ---ccCCccC---HHHHHHHc--cCCcHHHHHHHHHHHHHHHHHHHH
Q 001707 917 ---SLESGFQ---FNELANAT--EGYSGSDLKNLCIAAAYRPVQELL 955 (1023)
Q Consensus 917 ---~l~~dvd---l~~LA~~T--eGySgaDL~~L~~~Aa~~Airr~l 955 (1023)
++.-.++ +..|+... .-|-.+.|+.+++.-...++.+.+
T Consensus 787 ~~~gi~l~is~~al~~L~~~gy~~~~GARpL~r~I~~~i~~~la~~i 833 (857)
T PRK10865 787 EERGYEIHISDEALKLLSENGYDPVYGARPLKRAIQQQIENPLAQQI 833 (857)
T ss_pred HhCCCcCcCCHHHHHHHHHcCCCccCChHHHHHHHHHHHHHHHHHHH
Confidence 2221222 33444321 123367888888777776665543
No 77
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.71 E-value=4.8e-17 Score=182.59 Aligned_cols=121 Identities=12% Similarity=0.053 Sum_probs=84.0
Q ss_pred HHHHHHHHHhh-----cCCeEEEEcCchhhhhhc--cCCccHHHHH-HHHHHHHhcCCCCEEEEeccc-CCCCCcccccc
Q 001707 473 AMEALCEVLHS-----TQPLIVYFPDSSLWLSRA--VPRCNRKEFV-RKVEEMFDQLSGPVVLICGQN-KNETGPKEKEK 543 (1023)
Q Consensus 473 ~i~~L~e~~~~-----~~p~Iiff~di~~~~~~s--~~~~~~~~~~-s~l~~~~~~~~g~v~vI~~~~-~~d~~~~~~~~ 543 (1023)
+|..+|++|.. .+|+||||||||.++.+. .+.....+++ .+|+.+||++. .|.+. |.. ..+
T Consensus 195 ~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~-~v~l~-G~w~~~~-------- 264 (413)
T PLN00020 195 LIRQRYREAADIIKKKGKMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPT-NVSLG-GDWREKE-------- 264 (413)
T ss_pred HHHHHHHHHHHHhhccCCCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCc-ccccc-ccccccc--------
Confidence 67788888864 489999999999975543 2333335665 56666555432 23332 211 001
Q ss_pred ccccccccccccCCCCcchhhhcccccCCCcchHHHHh--ccccEEEEcCCChHHHHHHHHHHHHHHhhhhhhhhhHHHH
Q 001707 544 FTMILPNFGRLAKLPLPLQRLTEGLKATKRSDDNEIYN--LFTNVLSIHPPKEEDLLRTFNKQVEEDRRIVIYRSNLNEL 621 (1023)
Q Consensus 544 ~~~~~~~~~~~~~~~~~~~~LvIGmTNR~d~iDeaL~r--rFe~~ieI~LPdee~Rl~Il~Iht~~~~~~~~~~~~v~~l 621 (1023)
..-.+.||++||||+.||+||+| |||..+ .+|+.++|.+||++|++++ .....++..|
T Consensus 265 ---------------~~~~V~VIaTTNrpd~LDpALlRpGRfDk~i--~lPd~e~R~eIL~~~~r~~---~l~~~dv~~L 324 (413)
T PLN00020 265 ---------------EIPRVPIIVTGNDFSTLYAPLIRDGRMEKFY--WAPTREDRIGVVHGIFRDD---GVSREDVVKL 324 (413)
T ss_pred ---------------cCCCceEEEeCCCcccCCHhHcCCCCCCcee--CCCCHHHHHHHHHHHhccC---CCCHHHHHHH
Confidence 01136789999999999999999 999964 6999999999999997653 4556677666
Q ss_pred HH
Q 001707 622 HK 623 (1023)
Q Consensus 622 ~~ 623 (1023)
..
T Consensus 325 v~ 326 (413)
T PLN00020 325 VD 326 (413)
T ss_pred HH
Confidence 65
No 78
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=2.4e-16 Score=179.57 Aligned_cols=219 Identities=21% Similarity=0.301 Sum_probs=170.5
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccchhhh
Q 001707 727 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTSKWF 806 (1023)
Q Consensus 727 vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~elg~~fi~vs~seL~s~~~ 806 (1023)
.+|+.++--.+.|+.|.+-+..++...+.|.+.| ....+|.|||||||||||+++.|+|+++++.++.+..++....
T Consensus 198 stF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvG-kawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~n-- 274 (457)
T KOG0743|consen 198 STFETLAMDPDLKERIIDDLDDFIKGKDFYKRVG-KAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKLD-- 274 (457)
T ss_pred CCccccccChhHHHHHHHHHHHHHhcchHHHhcC-cchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccCc--
Confidence 7899999999999999999999999999999988 5677999999999999999999999999999999988775443
Q ss_pred hhHHHHHHHHHHHHhhcCCeEEEeccchhhhhccCCCch-----h-HHHHHHHHHHHhhhcCccCCCCceEEEEEecCCC
Q 001707 807 GDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFE-----H-EATRRMRNEFMSAWDGLRSKESQKILILGATNRP 880 (1023)
Q Consensus 807 ge~e~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~-----~-e~~~ril~~LL~~Ldgl~~~~~~~VlVIaTTN~p 880 (1023)
.+ ++.+...+ ...+||+|.|||.=+.-+..... + ....-.+.-||..+||+-+..+.--+||.|||.+
T Consensus 275 --~d--Lr~LL~~t--~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~ 348 (457)
T KOG0743|consen 275 --SD--LRHLLLAT--PNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHK 348 (457)
T ss_pred --HH--HHHHHHhC--CCCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCCh
Confidence 22 56666544 34589999999987643321111 1 1233557789999999988776677888999999
Q ss_pred CCCcHHHHh--hcCCceeecCCCHHHHHHHHHHHHhccccCCccCHHHHHHHccC--CcHHHHHHHHHH---HHHHHHHH
Q 001707 881 FDLDDAVIR--RLPRRIYVDLPDAENRMKILRIFLAHESLESGFQFNELANATEG--YSGSDLKNLCIA---AAYRPVQE 953 (1023)
Q Consensus 881 ~~Ld~aLlr--RFd~~I~V~lPd~eeR~~ILk~~L~~~~l~~dvdl~~LA~~TeG--ySgaDL~~L~~~---Aa~~Airr 953 (1023)
+.|||||+| |++..|+++.-+.++-..+++.++.... +..-+.++.+..++ .|++|+....-. .+..+++.
T Consensus 349 EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~--~h~L~~eie~l~~~~~~tPA~V~e~lm~~~~dad~~lk~ 426 (457)
T KOG0743|consen 349 EKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEE--DHRLFDEIERLIEETEVTPAQVAEELMKNKNDADVALKG 426 (457)
T ss_pred hhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCC--CcchhHHHHHHhhcCccCHHHHHHHHhhccccHHHHHHH
Confidence 999999999 9999999999999999999999987532 22335555555544 599999865422 35555555
Q ss_pred HHH
Q 001707 954 LLE 956 (1023)
Q Consensus 954 ~l~ 956 (1023)
+.+
T Consensus 427 Lv~ 429 (457)
T KOG0743|consen 427 LVE 429 (457)
T ss_pred HHH
Confidence 543
No 79
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.69 E-value=3.7e-15 Score=186.27 Aligned_cols=202 Identities=20% Similarity=0.224 Sum_probs=133.7
Q ss_pred cccChHHHHHHHHHHHHcccCCchhhccCCCC---CCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccchh
Q 001707 731 DIGALEDVKKALNELVILPMRRPDLFSRGNLL---RPCKGILLFGPPGTGKTLLAKALATEA---GANFISITGSTLTSK 804 (1023)
Q Consensus 731 DIgGle~vk~~L~e~V~~pL~~pelf~~~gli---~p~~gVLL~GPPGTGKT~LArAIA~el---g~~fi~vs~seL~s~ 804 (1023)
.|+|++.....+.+.+... +.|+. +|...+||+||+|+|||+||+++|..+ ...++.++++++...
T Consensus 567 ~v~GQ~~Av~~v~~~i~~~--------~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~ 638 (852)
T TIGR03345 567 RVIGQDHALEAIAERIRTA--------RAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEA 638 (852)
T ss_pred eEcChHHHHHHHHHHHHHH--------hcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhh
Confidence 5789999999888887542 12221 233358999999999999999999998 457889998765322
Q ss_pred ------------hhhhHHHHHHHHHHHHhhcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhcCccCC------
Q 001707 805 ------------WFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSK------ 866 (1023)
Q Consensus 805 ------------~~ge~e~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~------ 866 (1023)
|+|..+. ..+....++.+.+||+|||||..- ..+.+.|+..++.-.-.
T Consensus 639 ~~~~~l~g~~~gyvg~~~~--g~L~~~v~~~p~svvllDEieka~------------~~v~~~Llq~ld~g~l~d~~Gr~ 704 (852)
T TIGR03345 639 HTVSRLKGSPPGYVGYGEG--GVLTEAVRRKPYSVVLLDEVEKAH------------PDVLELFYQVFDKGVMEDGEGRE 704 (852)
T ss_pred hhhccccCCCCCccccccc--chHHHHHHhCCCcEEEEechhhcC------------HHHHHHHHHHhhcceeecCCCcE
Confidence 2221110 112334456778999999998652 23445566666532211
Q ss_pred -CCceEEEEEecCCCC-----------------------------CCcHHHHhhcCCceeecCCCHHHHHHHHHHHHhcc
Q 001707 867 -ESQKILILGATNRPF-----------------------------DLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHE 916 (1023)
Q Consensus 867 -~~~~VlVIaTTN~p~-----------------------------~Ld~aLlrRFd~~I~V~lPd~eeR~~ILk~~L~~~ 916 (1023)
.-.+.+||.|||... .+.|+|+.|++ +|.|.+.+.++..+|+...+...
T Consensus 705 vd~~n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEflnRi~-iI~F~pLs~e~l~~Iv~~~L~~l 783 (852)
T TIGR03345 705 IDFKNTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLGRMT-VIPYLPLDDDVLAAIVRLKLDRI 783 (852)
T ss_pred EeccccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhccee-EEEeCCCCHHHHHHHHHHHHHHH
Confidence 124678888988421 14567888996 78899999999999998876542
Q ss_pred --------ccC---CccCHHHHHHHccC--CcHHHHHHHHHHHHHHHHHHHH
Q 001707 917 --------SLE---SGFQFNELANATEG--YSGSDLKNLCIAAAYRPVQELL 955 (1023)
Q Consensus 917 --------~l~---~dvdl~~LA~~TeG--ySgaDL~~L~~~Aa~~Airr~l 955 (1023)
++. ++.....|+....+ |-.+.|+.+++.-...++.+.+
T Consensus 784 ~~rl~~~~gi~l~i~d~a~~~La~~g~~~~~GAR~L~r~Ie~~i~~~la~~~ 835 (852)
T TIGR03345 784 ARRLKENHGAELVYSEALVEHIVARCTEVESGARNIDAILNQTLLPELSRQI 835 (852)
T ss_pred HHHHHHhcCceEEECHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHH
Confidence 221 22235566766543 5678888888887777776544
No 80
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.69 E-value=5.5e-15 Score=184.78 Aligned_cols=206 Identities=21% Similarity=0.227 Sum_probs=135.7
Q ss_pred ccccChHHHHHHHHHHHHcccCCchhhccCCC---CCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccch
Q 001707 730 DDIGALEDVKKALNELVILPMRRPDLFSRGNL---LRPCKGILLFGPPGTGKTLLAKALATEA---GANFISITGSTLTS 803 (1023)
Q Consensus 730 dDIgGle~vk~~L~e~V~~pL~~pelf~~~gl---i~p~~gVLL~GPPGTGKT~LArAIA~el---g~~fi~vs~seL~s 803 (1023)
..|.|++.++..+...+... +.|+ .+|...+||+||+|+|||+||+++|..+ +.+++.++++++..
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~--------~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~ 580 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRA--------RVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYME 580 (821)
T ss_pred CcCcChHHHHHHHHHHHHHH--------hhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccc
Confidence 35789999999998887532 1111 2344568999999999999999999987 46899999887642
Q ss_pred h-----hhhhHHH-----HHHHHHHHHhhcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhcCccC-------C
Q 001707 804 K-----WFGDAEK-----LTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRS-------K 866 (1023)
Q Consensus 804 ~-----~~ge~e~-----~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~-------~ 866 (1023)
. ..|.... ....+....++.+.+||+|||||.+- ..+.+.|+..++.-.- -
T Consensus 581 ~~~~~~l~g~~~gyvg~~~~~~l~~~~~~~p~~VvllDeieka~------------~~v~~~Llq~le~g~~~d~~g~~v 648 (821)
T CHL00095 581 KHTVSKLIGSPPGYVGYNEGGQLTEAVRKKPYTVVLFDEIEKAH------------PDIFNLLLQILDDGRLTDSKGRTI 648 (821)
T ss_pred cccHHHhcCCCCcccCcCccchHHHHHHhCCCeEEEECChhhCC------------HHHHHHHHHHhccCceecCCCcEE
Confidence 1 1121100 01234455556666999999999862 2345666666664211 1
Q ss_pred CCceEEEEEecCCCCC-------------------------------------CcHHHHhhcCCceeecCCCHHHHHHHH
Q 001707 867 ESQKILILGATNRPFD-------------------------------------LDDAVIRRLPRRIYVDLPDAENRMKIL 909 (1023)
Q Consensus 867 ~~~~VlVIaTTN~p~~-------------------------------------Ld~aLlrRFd~~I~V~lPd~eeR~~IL 909 (1023)
.-.+.+||+|||.... +.|+|+.|++.+|.|.+.+.++..+|+
T Consensus 649 ~~~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~peflnRid~ii~F~pL~~~~l~~Iv 728 (821)
T CHL00095 649 DFKNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLNRLDEIIVFRQLTKNDVWEIA 728 (821)
T ss_pred ecCceEEEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhccCCeEEEeCCCCHHHHHHHH
Confidence 2346889999874211 235778899999999999999999998
Q ss_pred HHHHhcc-------ccC---CccCHHHHHHHc--cCCcHHHHHHHHHHHHHHHHHHHH
Q 001707 910 RIFLAHE-------SLE---SGFQFNELANAT--EGYSGSDLKNLCIAAAYRPVQELL 955 (1023)
Q Consensus 910 k~~L~~~-------~l~---~dvdl~~LA~~T--eGySgaDL~~L~~~Aa~~Airr~l 955 (1023)
...+... ++. ++.....|+... ..|-.+.|+.+++.-...++.+.+
T Consensus 729 ~~~l~~l~~rl~~~~i~l~~~~~~~~~La~~~~~~~~GAR~l~r~i~~~i~~~l~~~~ 786 (821)
T CHL00095 729 EIMLKNLFKRLNEQGIQLEVTERIKTLLIEEGYNPLYGARPLRRAIMRLLEDPLAEEV 786 (821)
T ss_pred HHHHHHHHHHHHHCCcEEEECHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHH
Confidence 8877632 111 122245566642 245567888887777776665543
No 81
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.67 E-value=1e-14 Score=182.94 Aligned_cols=206 Identities=21% Similarity=0.282 Sum_probs=137.1
Q ss_pred ccccChHHHHHHHHHHHHcccCCchhhccCCC---CCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccch
Q 001707 730 DDIGALEDVKKALNELVILPMRRPDLFSRGNL---LRPCKGILLFGPPGTGKTLLAKALATEA---GANFISITGSTLTS 803 (1023)
Q Consensus 730 dDIgGle~vk~~L~e~V~~pL~~pelf~~~gl---i~p~~gVLL~GPPGTGKT~LArAIA~el---g~~fi~vs~seL~s 803 (1023)
..|.|++.+...+...+... +.|+ .+|...+||+||+|||||++|+++|..+ +.+++.++++++..
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~--------~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~ 636 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRS--------RAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYME 636 (852)
T ss_pred cccCCChHHHHHHHHHHHHH--------hccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcc
Confidence 46889999999998887542 1121 2345679999999999999999999987 56899999887643
Q ss_pred hh-----hhhHHHH-----HHHHHHHHhhcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhcCcc-C------C
Q 001707 804 KW-----FGDAEKL-----TKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLR-S------K 866 (1023)
Q Consensus 804 ~~-----~ge~e~~-----I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~-~------~ 866 (1023)
.. .|..... ...+....++.+.+|||||||+.+- ..+.+.|+..|+.-. . .
T Consensus 637 ~~~~~~l~g~~~g~~g~~~~g~l~~~v~~~p~~vlllDeieka~------------~~v~~~Ll~~l~~g~l~d~~g~~v 704 (852)
T TIGR03346 637 KHSVARLIGAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKAH------------PDVFNVLLQVLDDGRLTDGQGRTV 704 (852)
T ss_pred cchHHHhcCCCCCccCcccccHHHHHHHcCCCcEEEEeccccCC------------HHHHHHHHHHHhcCceecCCCeEE
Confidence 21 1111000 1123333455666899999999762 233455555554321 0 1
Q ss_pred CCceEEEEEecCCCCC-------------------------CcHHHHhhcCCceeecCCCHHHHHHHHHHHHhc------
Q 001707 867 ESQKILILGATNRPFD-------------------------LDDAVIRRLPRRIYVDLPDAENRMKILRIFLAH------ 915 (1023)
Q Consensus 867 ~~~~VlVIaTTN~p~~-------------------------Ld~aLlrRFd~~I~V~lPd~eeR~~ILk~~L~~------ 915 (1023)
.-.+.+||+|||.... +.++|+.|++.++.+.+++.+...+|+...+..
T Consensus 705 d~rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~Rid~IivF~PL~~e~l~~I~~l~L~~l~~~l~ 784 (852)
T TIGR03346 705 DFRNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLNRIDEIVVFHPLGREQIARIVEIQLGRLRKRLA 784 (852)
T ss_pred ecCCcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhcCcCeEEecCCcCHHHHHHHHHHHHHHHHHHHH
Confidence 1246778899987321 346777899999999999999999998877652
Q ss_pred -cccC---CccCHHHHHHHc--cCCcHHHHHHHHHHHHHHHHHHHH
Q 001707 916 -ESLE---SGFQFNELANAT--EGYSGSDLKNLCIAAAYRPVQELL 955 (1023)
Q Consensus 916 -~~l~---~dvdl~~LA~~T--eGySgaDL~~L~~~Aa~~Airr~l 955 (1023)
.++. ++..+..|++.. ..+..+.|+++++.....++.+.+
T Consensus 785 ~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~i~~~l~~~~ 830 (852)
T TIGR03346 785 ERKITLELSDAALDFLAEAGYDPVYGARPLKRAIQREIENPLAKKI 830 (852)
T ss_pred HCCCeecCCHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHH
Confidence 1111 222345566642 246679999999988888887654
No 82
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.66 E-value=7.7e-15 Score=165.32 Aligned_cols=244 Identities=20% Similarity=0.178 Sum_probs=158.0
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccchhhh
Q 001707 727 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTSKWF 806 (1023)
Q Consensus 727 vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~elg~~fi~vs~seL~s~~~ 806 (1023)
.+|++++|.++.++.|..++.....+ ..++.++||+||||||||+||+++|++++..+..++.+.+..
T Consensus 22 ~~~~~~vG~~~~~~~l~~~l~~~~~~---------~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~~--- 89 (328)
T PRK00080 22 KSLDEFIGQEKVKENLKIFIEAAKKR---------GEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALEK--- 89 (328)
T ss_pred CCHHHhcCcHHHHHHHHHHHHHHHhc---------CCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEecccccC---
Confidence 47999999999999998887532111 134568999999999999999999999999887776553321
Q ss_pred hhHHHHHHHHHHHHhhcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHh--hhcCccC-----CCCceEEEEEecCC
Q 001707 807 GDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMS--AWDGLRS-----KESQKILILGATNR 879 (1023)
Q Consensus 807 ge~e~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~--~Ldgl~~-----~~~~~VlVIaTTN~ 879 (1023)
...+..++... ..++||||||||.+.... .+.....+..... .++.-.. ....++.+|++|++
T Consensus 90 ---~~~l~~~l~~l--~~~~vl~IDEi~~l~~~~-----~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~at~~ 159 (328)
T PRK00080 90 ---PGDLAAILTNL--EEGDVLFIDEIHRLSPVV-----EEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIGATTR 159 (328)
T ss_pred ---hHHHHHHHHhc--ccCCEEEEecHhhcchHH-----HHHHHHHHHhcceeeeeccCccccceeecCCCceEEeecCC
Confidence 12233333332 357899999999984221 1111111111100 0111000 01134788999999
Q ss_pred CCCCcHHHHhhcCCceeecCCCHHHHHHHHHHHHhccccC-CccCHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHHHH
Q 001707 880 PFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLE-SGFQFNELANATEGYSGSDLKNLCIAAAYRPVQELLEEE 958 (1023)
Q Consensus 880 p~~Ld~aLlrRFd~~I~V~lPd~eeR~~ILk~~L~~~~l~-~dvdl~~LA~~TeGySgaDL~~L~~~Aa~~Airr~l~~e 958 (1023)
+..+++++++||...+.++.|+.+++.+|++..+...++. ++..+..|+..+.| +++.+..++..+...+..+
T Consensus 160 ~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G-~pR~a~~~l~~~~~~a~~~----- 233 (328)
T PRK00080 160 AGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRG-TPRIANRLLRRVRDFAQVK----- 233 (328)
T ss_pred cccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCC-CchHHHHHHHHHHHHHHHc-----
Confidence 9999999999998889999999999999999888766554 33347888988887 4477777776554444321
Q ss_pred HHHHHhhCCCCCCCCcCCCCHHHHHHHHHhhCCCcccc-hhhHHHHHHHHHHhCC
Q 001707 959 RKLFIQRGKNDAAPVLRPLKLEDFIQSKAKVGPSVAYD-AASMNELRKWNEQYGE 1012 (1023)
Q Consensus 959 ~~~~~~~~~~~~~~~~r~Lt~eDF~~Al~kv~PSvs~d-~~~m~el~kW~d~yG~ 1012 (1023)
....|+.+++..++..+......- .....-++.+.+.|..
T Consensus 234 --------------~~~~I~~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~ 274 (328)
T PRK00080 234 --------------GDGVITKEIADKALDMLGVDELGLDEMDRKYLRTIIEKFGG 274 (328)
T ss_pred --------------CCCCCCHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCC
Confidence 113577778877777765543321 1122223345555443
No 83
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.66 E-value=7.8e-16 Score=163.41 Aligned_cols=188 Identities=24% Similarity=0.341 Sum_probs=119.1
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccchhhh
Q 001707 727 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTSKWF 806 (1023)
Q Consensus 727 vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~elg~~fi~vs~seL~s~~~ 806 (1023)
.+|+|++|++.++..++-++.....+ ..+..++|||||||+|||+||+.||++++.+|..++++.+.. .
T Consensus 21 ~~L~efiGQ~~l~~~l~i~i~aa~~r---------~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k--~ 89 (233)
T PF05496_consen 21 KSLDEFIGQEHLKGNLKILIRAAKKR---------GEALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEK--A 89 (233)
T ss_dssp SSCCCS-S-HHHHHHHHHHHHHHHCT---------TS---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--S--C
T ss_pred CCHHHccCcHHHHhhhHHHHHHHHhc---------CCCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhhh--H
Confidence 47999999999999998777543222 134468999999999999999999999999999888765321 1
Q ss_pred hhHHHHHHHHHHHHhhcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhcCcc--------CC------CCceEE
Q 001707 807 GDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLR--------SK------ESQKIL 872 (1023)
Q Consensus 807 ge~e~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~--------~~------~~~~Vl 872 (1023)
++ +..++... ....|||||||++|.... ...|+..|+... .. +-.+..
T Consensus 90 ~d----l~~il~~l--~~~~ILFIDEIHRlnk~~------------qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FT 151 (233)
T PF05496_consen 90 GD----LAAILTNL--KEGDILFIDEIHRLNKAQ------------QEILLPAMEDGKIDIIIGKGPNARSIRINLPPFT 151 (233)
T ss_dssp HH----HHHHHHT----TT-EEEECTCCC--HHH------------HHHHHHHHHCSEEEEEBSSSSS-BEEEEE----E
T ss_pred HH----HHHHHHhc--CCCcEEEEechhhccHHH------------HHHHHHHhccCeEEEEeccccccceeeccCCCce
Confidence 22 22223222 246799999999984221 122333333111 00 123688
Q ss_pred EEEecCCCCCCcHHHHhhcCCceeecCCCHHHHHHHHHHHHhccccC-CccCHHHHHHHccCCcHHHHHHHHH
Q 001707 873 ILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLE-SGFQFNELANATEGYSGSDLKNLCI 944 (1023)
Q Consensus 873 VIaTTN~p~~Ld~aLlrRFd~~I~V~lPd~eeR~~ILk~~L~~~~l~-~dvdl~~LA~~TeGySgaDL~~L~~ 944 (1023)
+||||++...|...|++||.....+...+.++..+|++......++. .+....+||..+.| +++-..++++
T Consensus 152 ligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rsrG-tPRiAnrll~ 223 (233)
T PF05496_consen 152 LIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARRSRG-TPRIANRLLR 223 (233)
T ss_dssp EEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCTTT-SHHHHHHHHH
T ss_pred EeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCC-ChHHHHHHHH
Confidence 99999999999999999998777899999999999998776655543 33346789999988 6666555554
No 84
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.65 E-value=6.9e-15 Score=163.18 Aligned_cols=200 Identities=22% Similarity=0.228 Sum_probs=133.7
Q ss_pred ccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccchhhhh
Q 001707 728 RFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTSKWFG 807 (1023)
Q Consensus 728 tfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~elg~~fi~vs~seL~s~~~g 807 (1023)
+|++++|++++++.|..++.....+ ..++.+++|+||||||||+||+++|++++.++..+..+.+.. .+
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~~---------~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~--~~ 70 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKMR---------QEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEK--PG 70 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHhc---------CCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcC--ch
Confidence 6899999999999999887542211 123457999999999999999999999998877665443221 11
Q ss_pred hHHHHHHHHHHHHhhcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHh--hhcCc-c----CCCCceEEEEEecCCC
Q 001707 808 DAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMS--AWDGL-R----SKESQKILILGATNRP 880 (1023)
Q Consensus 808 e~e~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~--~Ldgl-~----~~~~~~VlVIaTTN~p 880 (1023)
.+...+.. ...+.|||||||+.+.... .+....+++..-. .++.- . .....++.+|++|+.+
T Consensus 71 ----~l~~~l~~--~~~~~vl~iDEi~~l~~~~-----~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~~~ 139 (305)
T TIGR00635 71 ----DLAAILTN--LEEGDVLFIDEIHRLSPAV-----EELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTRA 139 (305)
T ss_pred ----hHHHHHHh--cccCCEEEEehHhhhCHHH-----HHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEecCCc
Confidence 11122222 1356899999999985321 1111111111100 00000 0 0012347889999999
Q ss_pred CCCcHHHHhhcCCceeecCCCHHHHHHHHHHHHhccccC-CccCHHHHHHHccCCcHHHHHHHHHHHHHHH
Q 001707 881 FDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLE-SGFQFNELANATEGYSGSDLKNLCIAAAYRP 950 (1023)
Q Consensus 881 ~~Ld~aLlrRFd~~I~V~lPd~eeR~~ILk~~L~~~~l~-~dvdl~~LA~~TeGySgaDL~~L~~~Aa~~A 950 (1023)
..+++++++||...+.+++|+.+++.++++..+....+. ++..+..|++.+.|+. +.+..++..+...|
T Consensus 140 ~~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~p-R~~~~ll~~~~~~a 209 (305)
T TIGR00635 140 GMLTSPLRDRFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRGTP-RIANRLLRRVRDFA 209 (305)
T ss_pred cccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCc-chHHHHHHHHHHHH
Confidence 999999999998888999999999999999888765443 3344678899888854 66677777654433
No 85
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.65 E-value=1.7e-15 Score=187.33 Aligned_cols=183 Identities=29% Similarity=0.374 Sum_probs=138.5
Q ss_pred ccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEEe
Q 001707 728 RFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEA----------GANFISIT 797 (1023)
Q Consensus 728 tfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~el----------g~~fi~vs 797 (1023)
.+++++|.++....+.+.+.. ....++||+||||||||++|+++|+.+ +..++.++
T Consensus 180 ~l~~~igr~~ei~~~~~~L~~--------------~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~ 245 (731)
T TIGR02639 180 KIDPLIGREDELERTIQVLCR--------------RKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLD 245 (731)
T ss_pred CCCcccCcHHHHHHHHHHHhc--------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEec
Confidence 578899999988877765521 123479999999999999999999987 67889999
Q ss_pred ccccc--hhhhhhHHHHHHHHHHHHhhcCCeEEEeccchhhhhccCCCch-hHHHHHHHHHHHhhhcCccCCCCceEEEE
Q 001707 798 GSTLT--SKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFE-HEATRRMRNEFMSAWDGLRSKESQKILIL 874 (1023)
Q Consensus 798 ~seL~--s~~~ge~e~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~-~e~~~ril~~LL~~Ldgl~~~~~~~VlVI 874 (1023)
+..+. ..|.|+.+..++.+|..+.+..++||||||||.|.+....... ... .+.|...+ ....+.+|
T Consensus 246 ~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~----~~~L~~~l------~~g~i~~I 315 (731)
T TIGR02639 246 MGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDA----SNLLKPAL------SSGKLRCI 315 (731)
T ss_pred HHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHH----HHHHHHHH------hCCCeEEE
Confidence 88887 4688999999999999998888999999999999865432211 111 12222222 23468899
Q ss_pred EecCCC-----CCCcHHHHhhcCCceeecCCCHHHHHHHHHHHHhcc----cc-CCccCHHHHHHHccCCc
Q 001707 875 GATNRP-----FDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHE----SL-ESGFQFNELANATEGYS 935 (1023)
Q Consensus 875 aTTN~p-----~~Ld~aLlrRFd~~I~V~lPd~eeR~~ILk~~L~~~----~l-~~dvdl~~LA~~TeGyS 935 (1023)
|+|+.. ...|+++.|||. .|.|+.|+.+++.+||+.+.... .+ ..+..+..++..+..|-
T Consensus 316 gaTt~~e~~~~~~~d~al~rRf~-~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ryi 385 (731)
T TIGR02639 316 GSTTYEEYKNHFEKDRALSRRFQ-KIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSARYI 385 (731)
T ss_pred EecCHHHHHHHhhhhHHHHHhCc-eEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhccc
Confidence 999863 458999999996 79999999999999999776542 11 23445667777776654
No 86
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.64 E-value=4.2e-15 Score=167.08 Aligned_cols=167 Identities=28% Similarity=0.422 Sum_probs=122.9
Q ss_pred cccccccChHHHH---HHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccch
Q 001707 727 VRFDDIGALEDVK---KALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTS 803 (1023)
Q Consensus 727 vtfdDIgGle~vk---~~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~elg~~fi~vs~seL~s 803 (1023)
.+++|++|++.+. .-|..+|.. ....+++||||||||||+||+.||...+.+|..++...
T Consensus 21 ~~lde~vGQ~HLlg~~~~lrr~v~~--------------~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~--- 83 (436)
T COG2256 21 KSLDEVVGQEHLLGEGKPLRRAVEA--------------GHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVT--- 83 (436)
T ss_pred CCHHHhcChHhhhCCCchHHHHHhc--------------CCCceeEEECCCCCCHHHHHHHHHHhhCCceEEecccc---
Confidence 4688999988776 344444421 12357999999999999999999999999999998643
Q ss_pred hhhhhHHHHHHHHHHHHhhcC----CeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhcCccCCCCceEEEEEec--
Q 001707 804 KWFGDAEKLTKALFSFASKLA----PVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGAT-- 877 (1023)
Q Consensus 804 ~~~ge~e~~I~~lF~~A~k~~----PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~~~~~VlVIaTT-- 877 (1023)
...+-++.+|..|++.. ..|||||||+++....+ ..||-.+ ++..|++||||
T Consensus 84 ----~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~QQ------------D~lLp~v------E~G~iilIGATTE 141 (436)
T COG2256 84 ----SGVKDLREIIEEARKNRLLGRRTILFLDEIHRFNKAQQ------------DALLPHV------ENGTIILIGATTE 141 (436)
T ss_pred ----ccHHHHHHHHHHHHHHHhcCCceEEEEehhhhcChhhh------------hhhhhhh------cCCeEEEEeccCC
Confidence 23467888888886543 48999999999853332 2344443 45678888887
Q ss_pred CCCCCCcHHHHhhcCCceeecCCCHHHHHHHHHHHHhc--cccC------CccCHHHHHHHccC
Q 001707 878 NRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAH--ESLE------SGFQFNELANATEG 933 (1023)
Q Consensus 878 N~p~~Ld~aLlrRFd~~I~V~lPd~eeR~~ILk~~L~~--~~l~------~dvdl~~LA~~TeG 933 (1023)
|+.+.|.++|++|+ .++.+.+.+.++..++++..+.. .++. ++..+..|+..++|
T Consensus 142 NPsF~ln~ALlSR~-~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~G 204 (436)
T COG2256 142 NPSFELNPALLSRA-RVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNG 204 (436)
T ss_pred CCCeeecHHHhhhh-heeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCc
Confidence 77788999999999 67889999999999999884432 2222 23335667777776
No 87
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.63 E-value=3.7e-15 Score=185.26 Aligned_cols=207 Identities=18% Similarity=0.259 Sum_probs=143.7
Q ss_pred cccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccc--------
Q 001707 731 DIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLT-------- 802 (1023)
Q Consensus 731 DIgGle~vk~~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~elg~~fi~vs~seL~-------- 802 (1023)
++.|++++++.+.+++..+..+. . .....+||+||||||||++|++||..++.+|+.+++..+.
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~~------~--~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~ 392 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLRG------K--MKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGH 392 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhhc------C--CCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCC
Confidence 58899999999999876543221 1 1224799999999999999999999999999999876442
Q ss_pred -hhhhhhHHHHHHHHHHHHhhcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhcC-----cc------CCCCce
Q 001707 803 -SKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDG-----LR------SKESQK 870 (1023)
Q Consensus 803 -s~~~ge~e~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldg-----l~------~~~~~~ 870 (1023)
..|.|.....+...|..+....| ||||||||.+....++. ..+.|+..|+. +. ..+..+
T Consensus 393 ~~~~~g~~~g~i~~~l~~~~~~~~-villDEidk~~~~~~~~--------~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~ 463 (775)
T TIGR00763 393 RRTYVGAMPGRIIQGLKKAKTKNP-LFLLDEIDKIGSSFRGD--------PASALLEVLDPEQNNAFSDHYLDVPFDLSK 463 (775)
T ss_pred CCceeCCCCchHHHHHHHhCcCCC-EEEEechhhcCCccCCC--------HHHHHHHhcCHHhcCccccccCCceeccCC
Confidence 23556555667778888766665 88999999997543321 12344444432 00 012247
Q ss_pred EEEEEecCCCCCCcHHHHhhcCCceeecCCCHHHHHHHHHHHHh-----ccccC------CccCHHHHHHH-ccCCcHHH
Q 001707 871 ILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLA-----HESLE------SGFQFNELANA-TEGYSGSD 938 (1023)
Q Consensus 871 VlVIaTTN~p~~Ld~aLlrRFd~~I~V~lPd~eeR~~ILk~~L~-----~~~l~------~dvdl~~LA~~-TeGySgaD 938 (1023)
+++|+|||.++.+++++++||. .|.++.|+.+++..|++.++. ...+. .+..+..|++. +..+..++
T Consensus 464 v~~I~TtN~~~~i~~~L~~R~~-vi~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~e~g~R~ 542 (775)
T TIGR00763 464 VIFIATANSIDTIPRPLLDRME-VIELSGYTEEEKLEIAKKYLIPKALEDHGLKPDELKITDEALLLLIKYYTREAGVRN 542 (775)
T ss_pred EEEEEecCCchhCCHHHhCCee-EEecCCCCHHHHHHHHHHHHHHHHHHHcCCCcceEEECHHHHHHHHHhcChhcCChH
Confidence 8999999999999999999994 789999999999999988762 11221 12234444442 23344577
Q ss_pred HHHHHHHHHHHHHHHHH
Q 001707 939 LKNLCIAAAYRPVQELL 955 (1023)
Q Consensus 939 L~~L~~~Aa~~Airr~l 955 (1023)
|+..+...+..+.++++
T Consensus 543 l~r~i~~~~~~~~~~~~ 559 (775)
T TIGR00763 543 LERQIEKICRKAAVKLV 559 (775)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 77777776666655544
No 88
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.58 E-value=7.9e-14 Score=163.69 Aligned_cols=211 Identities=18% Similarity=0.287 Sum_probs=136.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEeccccchhhhhhHHHHHHHHHHHHhhcCCeEEEeccchhhhhcc
Q 001707 766 KGILLFGPPGTGKTLLAKALATEA-----GANFISITGSTLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGAR 840 (1023)
Q Consensus 766 ~gVLL~GPPGTGKT~LArAIA~el-----g~~fi~vs~seL~s~~~ge~e~~I~~lF~~A~k~~PsIIfIDEID~L~~~r 840 (1023)
.+++||||||+|||+|++++|+++ +..++++++.++...+..........-|....+ .+.+|+||||+.+.+..
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~-~~dlLiiDDi~~l~~~~ 227 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFVNALRNNTMEEFKEKYR-SVDVLLIDDIQFLAGKE 227 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHcCcHHHHHHHHh-cCCEEEEehhhhhcCCH
Confidence 469999999999999999999987 567889998887766554432222233433333 57899999999985432
Q ss_pred CCCchhHHHHHHHHHHHhhhcCccCCCCceEEEEEecCCCCC---CcHHHHhhcCC--ceeecCCCHHHHHHHHHHHHhc
Q 001707 841 GGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPFD---LDDAVIRRLPR--RIYVDLPDAENRMKILRIFLAH 915 (1023)
Q Consensus 841 ~~~~~~e~~~ril~~LL~~Ldgl~~~~~~~VlVIaTTN~p~~---Ld~aLlrRFd~--~I~V~lPd~eeR~~ILk~~L~~ 915 (1023)
. ...+|+..++.+... .+.+||+++..|.. +++.+.+||.. .+.+.+|+.++|..|++..+..
T Consensus 228 ~----------~~~~l~~~~n~l~~~--~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~~~~ 295 (450)
T PRK00149 228 R----------TQEEFFHTFNALHEA--GKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKKKAEE 295 (450)
T ss_pred H----------HHHHHHHHHHHHHHC--CCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHHHHHHH
Confidence 1 112333333333221 23456666566655 67899999964 6888999999999999999886
Q ss_pred cccC-CccCHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCcCCCCHHHHHHHHHhhCCCcc
Q 001707 916 ESLE-SGFQFNELANATEGYSGSDLKNLCIAAAYRPVQELLEEERKLFIQRGKNDAAPVLRPLKLEDFIQSKAKVGPSVA 994 (1023)
Q Consensus 916 ~~l~-~dvdl~~LA~~TeGySgaDL~~L~~~Aa~~Airr~l~~e~~~~~~~~~~~~~~~~r~Lt~eDF~~Al~kv~PSvs 994 (1023)
.++. ++..+..||..+.| +.++|..++......+... .++||++.+.+++..+...-.
T Consensus 296 ~~~~l~~e~l~~ia~~~~~-~~R~l~~~l~~l~~~~~~~--------------------~~~it~~~~~~~l~~~~~~~~ 354 (450)
T PRK00149 296 EGIDLPDEVLEFIAKNITS-NVRELEGALNRLIAYASLT--------------------GKPITLELAKEALKDLLAAQK 354 (450)
T ss_pred cCCCCCHHHHHHHHcCcCC-CHHHHHHHHHHHHHHHHhh--------------------CCCCCHHHHHHHHHHhhccCC
Confidence 5543 44457788887776 7777777776554433221 145777777777776522111
Q ss_pred cchhhHHH-HHHHHHHhC
Q 001707 995 YDAASMNE-LRKWNEQYG 1011 (1023)
Q Consensus 995 ~d~~~m~e-l~kW~d~yG 1011 (1023)
. ....+. +....+.||
T Consensus 355 ~-~~~~~~i~~~v~~~~~ 371 (450)
T PRK00149 355 K-KITIENIQKVVAEYYN 371 (450)
T ss_pred C-CCCHHHHHHHHHHHcC
Confidence 1 112222 345666777
No 89
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.57 E-value=3.5e-14 Score=174.94 Aligned_cols=197 Identities=22% Similarity=0.265 Sum_probs=141.3
Q ss_pred ccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEEe
Q 001707 728 RFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEA----------GANFISIT 797 (1023)
Q Consensus 728 tfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~el----------g~~fi~vs 797 (1023)
.++.++|.++....+.+.+.. ....++||+||||||||++|+++|... +..++.++
T Consensus 184 ~~~~liGR~~ei~~~i~iL~r--------------~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~ 249 (758)
T PRK11034 184 GIDPLIGREKELERAIQVLCR--------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLD 249 (758)
T ss_pred CCCcCcCCCHHHHHHHHHHhc--------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEecc
Confidence 467788999888888776532 112468999999999999999999875 45566666
Q ss_pred ccccc--hhhhhhHHHHHHHHHHHHhhcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhcCccCCCCceEEEEE
Q 001707 798 GSTLT--SKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILG 875 (1023)
Q Consensus 798 ~seL~--s~~~ge~e~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~~~~~VlVIa 875 (1023)
...++ ..|.|+.+..++.+|..+.+..++||||||||.|++.......... +.+.|...+ ....+.||+
T Consensus 250 ~~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d---~~nlLkp~L------~~g~i~vIg 320 (758)
T PRK11034 250 IGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVD---AANLIKPLL------SSGKIRVIG 320 (758)
T ss_pred HHHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHH---HHHHHHHHH------hCCCeEEEe
Confidence 66655 3577888999999999998888999999999999876542221111 122222222 234699999
Q ss_pred ecCCCC-----CCcHHHHhhcCCceeecCCCHHHHHHHHHHHHhccccCCccCH-----HHHHHHccC-----CcHHHHH
Q 001707 876 ATNRPF-----DLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLESGFQF-----NELANATEG-----YSGSDLK 940 (1023)
Q Consensus 876 TTN~p~-----~Ld~aLlrRFd~~I~V~lPd~eeR~~ILk~~L~~~~l~~dvdl-----~~LA~~TeG-----ySgaDL~ 940 (1023)
+|+.++ ..|++|.|||. .|.|+.|+.+++..||+.+........++.+ ..++..+.. +-+....
T Consensus 321 ATt~~E~~~~~~~D~AL~rRFq-~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~ryi~~r~lPdKai 399 (758)
T PRK11034 321 STTYQEFSNIFEKDRALARRFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAI 399 (758)
T ss_pred cCChHHHHHHhhccHHHHhhCc-EEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhccccCccChHHHH
Confidence 998764 58999999995 7999999999999999987765444333433 333333333 3455777
Q ss_pred HHHHHHHH
Q 001707 941 NLCIAAAY 948 (1023)
Q Consensus 941 ~L~~~Aa~ 948 (1023)
.++.+|+.
T Consensus 400 dlldea~a 407 (758)
T PRK11034 400 DVIDEAGA 407 (758)
T ss_pred HHHHHHHH
Confidence 78887765
No 90
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.56 E-value=1.3e-13 Score=159.54 Aligned_cols=171 Identities=19% Similarity=0.336 Sum_probs=115.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEeccccchhhhhhHHHHHHHHHHHHhhcCCeEEEeccchhhhhcc
Q 001707 766 KGILLFGPPGTGKTLLAKALATEA-----GANFISITGSTLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGAR 840 (1023)
Q Consensus 766 ~gVLL~GPPGTGKT~LArAIA~el-----g~~fi~vs~seL~s~~~ge~e~~I~~lF~~A~k~~PsIIfIDEID~L~~~r 840 (1023)
.+++||||+|+|||+|++++++++ +..++.+++.++...+...........|....+ .+.+|+||||+.+.+..
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~-~~dlLiiDDi~~l~~~~ 215 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDFVNALRNNKMEEFKEKYR-SVDLLLIDDIQFLAGKE 215 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHHHHHHHcCCHHHHHHHHH-hCCEEEEehhhhhcCCH
Confidence 469999999999999999999987 578889998877655443321111112322222 36899999999985432
Q ss_pred CCCchhHHHHHHHHHHHhhhcCccCCCCceEEEEEecCCCCC---CcHHHHhhcCC--ceeecCCCHHHHHHHHHHHHhc
Q 001707 841 GGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPFD---LDDAVIRRLPR--RIYVDLPDAENRMKILRIFLAH 915 (1023)
Q Consensus 841 ~~~~~~e~~~ril~~LL~~Ldgl~~~~~~~VlVIaTTN~p~~---Ld~aLlrRFd~--~I~V~lPd~eeR~~ILk~~L~~ 915 (1023)
. ...+|+..++.+.. ..+.+||+++..|.. +++.+.+||.. .+.+++|+.++|..|++..+..
T Consensus 216 ~----------~~~~l~~~~n~~~~--~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~~~~ 283 (405)
T TIGR00362 216 R----------TQEEFFHTFNALHE--NGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQKKAEE 283 (405)
T ss_pred H----------HHHHHHHHHHHHHH--CCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHHHHH
Confidence 1 11223333333221 123456655555554 66789999964 6889999999999999999887
Q ss_pred cccC-CccCHHHHHHHccCCcHHHHHHHHHHHHHHH
Q 001707 916 ESLE-SGFQFNELANATEGYSGSDLKNLCIAAAYRP 950 (1023)
Q Consensus 916 ~~l~-~dvdl~~LA~~TeGySgaDL~~L~~~Aa~~A 950 (1023)
.++. ++..+..||....+ +.++|..++......+
T Consensus 284 ~~~~l~~e~l~~ia~~~~~-~~r~l~~~l~~l~~~a 318 (405)
T TIGR00362 284 EGLELPDEVLEFIAKNIRS-NVRELEGALNRLLAYA 318 (405)
T ss_pred cCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHH
Confidence 6554 44457788887775 7788888777655444
No 91
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.55 E-value=1.3e-13 Score=164.75 Aligned_cols=189 Identities=20% Similarity=0.235 Sum_probs=135.1
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC---------------
Q 001707 727 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGA--------------- 791 (1023)
Q Consensus 727 vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~elg~--------------- 791 (1023)
.+|+||+|++.+++.|..++.. + +.++.+||+||+|+|||++|+.+|+.+.+
T Consensus 13 qtFddVIGQe~vv~~L~~al~~----------g---RLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG 79 (700)
T PRK12323 13 RDFTTLVGQEHVVRALTHALEQ----------Q---RLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCG 79 (700)
T ss_pred CcHHHHcCcHHHHHHHHHHHHh----------C---CCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCc
Confidence 5799999999999999998743 1 23467899999999999999999999865
Q ss_pred --------------cEEEEeccccchhhhhhHHHHHHHHHHHHhhcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHH
Q 001707 792 --------------NFISITGSTLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFM 857 (1023)
Q Consensus 792 --------------~fi~vs~seL~s~~~ge~e~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL 857 (1023)
.++.++...- ..+.+....+..+..........|+||||+|.|. ....|.||
T Consensus 80 ~C~sC~~I~aG~hpDviEIdAas~--~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls------------~~AaNALL 145 (700)
T PRK12323 80 QCRACTEIDAGRFVDYIEMDAASN--RGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLT------------NHAFNAML 145 (700)
T ss_pred ccHHHHHHHcCCCCcceEeccccc--CCHHHHHHHHHHHHhchhcCCceEEEEEChHhcC------------HHHHHHHH
Confidence 2333333211 1122222223222222222345799999999983 22356777
Q ss_pred hhhcCccCCCCceEEEEEecCCCCCCcHHHHhhcCCceeecCCCHHHHHHHHHHHHhccccCCc-cCHHHHHHHccCCcH
Q 001707 858 SAWDGLRSKESQKILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLESG-FQFNELANATEGYSG 936 (1023)
Q Consensus 858 ~~Ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~V~lPd~eeR~~ILk~~L~~~~l~~d-vdl~~LA~~TeGySg 936 (1023)
..|+.- ..++++|.+|+.+..|.+.+++|| ..+.|..++.++..+.|+.++..+++..+ ..+..|+..+.| +.
T Consensus 146 KTLEEP----P~~v~FILaTtep~kLlpTIrSRC-q~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~~IA~~A~G-s~ 219 (700)
T PRK12323 146 KTLEEP----PEHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLAQAAQG-SM 219 (700)
T ss_pred HhhccC----CCCceEEEEeCChHhhhhHHHHHH-HhcccCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 777652 346788888999999999999999 68899999999999999988877665433 336677888776 77
Q ss_pred HHHHHHHHHHHH
Q 001707 937 SDLKNLCIAAAY 948 (1023)
Q Consensus 937 aDL~~L~~~Aa~ 948 (1023)
++..+++..+..
T Consensus 220 RdALsLLdQaia 231 (700)
T PRK12323 220 RDALSLTDQAIA 231 (700)
T ss_pred HHHHHHHHHHHH
Confidence 888888776554
No 92
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.54 E-value=1.4e-13 Score=160.72 Aligned_cols=184 Identities=17% Similarity=0.187 Sum_probs=132.0
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc--------------
Q 001707 727 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGAN-------------- 792 (1023)
Q Consensus 727 vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~elg~~-------------- 792 (1023)
.+|+|++|++.+...|..++.. + +.++.+||+||||||||++|+++|+.++..
T Consensus 15 ~~f~dvVGQe~iv~~L~~~i~~-----------~--ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC 81 (484)
T PRK14956 15 QFFRDVIHQDLAIGALQNALKS-----------G--KIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSC 81 (484)
T ss_pred CCHHHHhChHHHHHHHHHHHHc-----------C--CCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHH
Confidence 5799999999999999888743 1 233569999999999999999999998652
Q ss_pred ----------EEEEeccccchhhhhhHHHHHHHHHHHHh----hcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHh
Q 001707 793 ----------FISITGSTLTSKWFGDAEKLTKALFSFAS----KLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMS 858 (1023)
Q Consensus 793 ----------fi~vs~seL~s~~~ge~e~~I~~lF~~A~----k~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~ 858 (1023)
|+.+++..-. ....++.+...+. .....|+||||+|.|. ....+.|+.
T Consensus 82 ~~i~~g~~~dviEIdaas~~------gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls------------~~A~NALLK 143 (484)
T PRK14956 82 LEITKGISSDVLEIDAASNR------GIENIRELRDNVKFAPMGGKYKVYIIDEVHMLT------------DQSFNALLK 143 (484)
T ss_pred HHHHccCCccceeechhhcc------cHHHHHHHHHHHHhhhhcCCCEEEEEechhhcC------------HHHHHHHHH
Confidence 3333332110 1122333333322 2345699999999983 223566777
Q ss_pred hhcCccCCCCceEEEEEecCCCCCCcHHHHhhcCCceeecCCCHHHHHHHHHHHHhccccC-CccCHHHHHHHccCCcHH
Q 001707 859 AWDGLRSKESQKILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLE-SGFQFNELANATEGYSGS 937 (1023)
Q Consensus 859 ~Ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~V~lPd~eeR~~ILk~~L~~~~l~-~dvdl~~LA~~TeGySga 937 (1023)
.++. +...+++|.+|+.++.|.+++++|+ ..+.|..++.++..++++.++..+++. ++..+..||+.++| +.+
T Consensus 144 tLEE----Pp~~viFILaTte~~kI~~TI~SRC-q~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~S~G-d~R 217 (484)
T PRK14956 144 TLEE----PPAHIVFILATTEFHKIPETILSRC-QDFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKKGDG-SVR 217 (484)
T ss_pred Hhhc----CCCceEEEeecCChhhccHHHHhhh-heeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-hHH
Confidence 6654 2356888888888999999999999 578899999999999999988877654 44457778888887 667
Q ss_pred HHHHHHHHHH
Q 001707 938 DLKNLCIAAA 947 (1023)
Q Consensus 938 DL~~L~~~Aa 947 (1023)
|..++++.++
T Consensus 218 dAL~lLeq~i 227 (484)
T PRK14956 218 DMLSFMEQAI 227 (484)
T ss_pred HHHHHHHHHH
Confidence 7767666543
No 93
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.53 E-value=1.6e-13 Score=148.57 Aligned_cols=195 Identities=24% Similarity=0.277 Sum_probs=137.3
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccchhhh
Q 001707 727 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTSKWF 806 (1023)
Q Consensus 727 vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~elg~~fi~vs~seL~s~~~ 806 (1023)
.+|+|.+|++++|+.|.-++.....+. ...-+||||||||.|||+||..||+++|.++...+++-+.-
T Consensus 23 ~~l~efiGQ~~vk~~L~ifI~AAk~r~---------e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK--- 90 (332)
T COG2255 23 KTLDEFIGQEKVKEQLQIFIKAAKKRG---------EALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEK--- 90 (332)
T ss_pred ccHHHhcChHHHHHHHHHHHHHHHhcC---------CCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccccC---
Confidence 468999999999999998886543332 34568999999999999999999999999998877665432
Q ss_pred hhHHHHHHHHHHHHhhcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHH-hhhcCccC------CCCceEEEEEecCC
Q 001707 807 GDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFM-SAWDGLRS------KESQKILILGATNR 879 (1023)
Q Consensus 807 ge~e~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL-~~Ldgl~~------~~~~~VlVIaTTN~ 879 (1023)
..-+..++... ....|||||||+++.+.. .+..--.+..|. ..+-|-.+ -+-.++.+||+|.+
T Consensus 91 ---~gDlaaiLt~L--e~~DVLFIDEIHrl~~~v-----EE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGATTr 160 (332)
T COG2255 91 ---PGDLAAILTNL--EEGDVLFIDEIHRLSPAV-----EEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGATTR 160 (332)
T ss_pred ---hhhHHHHHhcC--CcCCeEEEehhhhcChhH-----HHHhhhhhhheeEEEEEccCCccceEeccCCCeeEeeeccc
Confidence 12233333332 245899999999995332 222222222221 01111111 12346889999999
Q ss_pred CCCCcHHHHhhcCCceeecCCCHHHHHHHHHHHHhccccC-CccCHHHHHHHccCCcHHHHHHHHH
Q 001707 880 PFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLE-SGFQFNELANATEGYSGSDLKNLCI 944 (1023)
Q Consensus 880 p~~Ld~aLlrRFd~~I~V~lPd~eeR~~ILk~~L~~~~l~-~dvdl~~LA~~TeGySgaDL~~L~~ 944 (1023)
...|...|+.||....++...+.++..+|+........+. .+....++|+.+.| |++=-..|++
T Consensus 161 ~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRG-TPRIAnRLLr 225 (332)
T COG2255 161 AGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRG-TPRIANRLLR 225 (332)
T ss_pred cccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccC-CcHHHHHHHH
Confidence 9999999999999999999999999999999887766554 33446789999988 5554444443
No 94
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.53 E-value=4e-13 Score=162.36 Aligned_cols=186 Identities=21% Similarity=0.231 Sum_probs=135.2
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC---------------
Q 001707 727 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGA--------------- 791 (1023)
Q Consensus 727 vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~elg~--------------- 791 (1023)
.+|++|+|++.+++.|+.++.. + +.++.+||+||+|||||++|+++|+.+++
T Consensus 13 qtFdEVIGQe~Vv~~L~~aL~~-----------g--RL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sC 79 (830)
T PRK07003 13 KDFASLVGQEHVVRALTHALDG-----------G--RLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRAC 79 (830)
T ss_pred CcHHHHcCcHHHHHHHHHHHhc-----------C--CCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHH
Confidence 5799999999999999988732 1 23457899999999999999999998864
Q ss_pred ---------cEEEEeccccchhhhhhHHHHHHHHHHHHh----hcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHh
Q 001707 792 ---------NFISITGSTLTSKWFGDAEKLTKALFSFAS----KLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMS 858 (1023)
Q Consensus 792 ---------~fi~vs~seL~s~~~ge~e~~I~~lF~~A~----k~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~ 858 (1023)
.++.++..+- .....++.+...+. .....||||||+|.|.. ...|.|+.
T Consensus 80 r~I~~G~h~DviEIDAas~------rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~------------~A~NALLK 141 (830)
T PRK07003 80 REIDEGRFVDYVEMDAASN------RGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTN------------HAFNAMLK 141 (830)
T ss_pred HHHhcCCCceEEEeccccc------ccHHHHHHHHHHHHhccccCCceEEEEeChhhCCH------------HHHHHHHH
Confidence 2333333211 11122344444432 22347999999999832 22456666
Q ss_pred hhcCccCCCCceEEEEEecCCCCCCcHHHHhhcCCceeecCCCHHHHHHHHHHHHhccccC-CccCHHHHHHHccCCcHH
Q 001707 859 AWDGLRSKESQKILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLE-SGFQFNELANATEGYSGS 937 (1023)
Q Consensus 859 ~Ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~V~lPd~eeR~~ILk~~L~~~~l~-~dvdl~~LA~~TeGySga 937 (1023)
.|+.. ...+.||.+||.+..|.+.|++|| ..+.|..++.++...+|+.++..+++. ++..+..|++.++| +.+
T Consensus 142 tLEEP----P~~v~FILaTtd~~KIp~TIrSRC-q~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A~G-smR 215 (830)
T PRK07003 142 TLEEP----PPHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQG-SMR 215 (830)
T ss_pred HHHhc----CCCeEEEEEECChhhccchhhhhe-EEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 66543 346888889999999999999999 688999999999999999998877654 34457788888887 667
Q ss_pred HHHHHHHHHHHH
Q 001707 938 DLKNLCIAAAYR 949 (1023)
Q Consensus 938 DL~~L~~~Aa~~ 949 (1023)
+..+++..+...
T Consensus 216 dALsLLdQAia~ 227 (830)
T PRK07003 216 DALSLTDQAIAY 227 (830)
T ss_pred HHHHHHHHHHHh
Confidence 777777666543
No 95
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=1.6e-12 Score=158.04 Aligned_cols=406 Identities=17% Similarity=0.199 Sum_probs=225.1
Q ss_pred HHHHHHHHHhhcCCeEEEEcCchhhhhhccCCccHHHHHHHHHHHHhcCCCCEEEEecccCCCCCccccccccccccccc
Q 001707 473 AMEALCEVLHSTQPLIVYFPDSSLWLSRAVPRCNRKEFVRKVEEMFDQLSGPVVLICGQNKNETGPKEKEKFTMILPNFG 552 (1023)
Q Consensus 473 ~i~~L~e~~~~~~p~Iiff~di~~~~~~s~~~~~~~~~~s~l~~~~~~~~g~v~vI~~~~~~d~~~~~~~~~~~~~~~~~ 552 (1023)
-+..+.+++.+..|.|||+|||-.++.-..+++-.-...++|+-+|.. |-+.+||+||-.+. .+-
T Consensus 250 Rlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLAR--GeL~~IGATT~~EY-Rk~------------ 314 (786)
T COG0542 250 RLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALAR--GELRCIGATTLDEY-RKY------------ 314 (786)
T ss_pred HHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhc--CCeEEEEeccHHHH-HHH------------
Confidence 678888999988899999999999988765433111346666665543 77888888876441 110
Q ss_pred cccCCCCcchhhhcccccCCCcchHHHHhccccEEEEcCCChHHHHHHHHHHHHHHh--hh-------------------
Q 001707 553 RLAKLPLPLQRLTEGLKATKRSDDNEIYNLFTNVLSIHPPKEEDLLRTFNKQVEEDR--RI------------------- 611 (1023)
Q Consensus 553 ~~~~~~~~~~~LvIGmTNR~d~iDeaL~rrFe~~ieI~LPdee~Rl~Il~Iht~~~~--~~------------------- 611 (1023)
=.-|.||.|||- .+.+.-|+.+.-.+||+---.+-- ..
T Consensus 315 --------------------iEKD~AL~RRFQ-~V~V~EPs~e~ti~ILrGlk~~yE~hH~V~i~D~Al~aAv~LS~RYI 373 (786)
T COG0542 315 --------------------IEKDAALERRFQ-KVLVDEPSVEDTIAILRGLKERYEAHHGVRITDEALVAAVTLSDRYI 373 (786)
T ss_pred --------------------hhhchHHHhcCc-eeeCCCCCHHHHHHHHHHHHHHHHHccCceecHHHHHHHHHHHHhhc
Confidence 024789999994 678899999998888865311100 00
Q ss_pred ---hhhhhhHHHHHHHHhhccC---Ccccccccccchhhhhhh----------hhhhhHhhcccccccccCCCCcc--CC
Q 001707 612 ---VIYRSNLNELHKVLEDHEL---SCTDLLHVNTDGVILTKQ----------RAEKVVGWAKNHYLSSCSFPSVK--GQ 673 (1023)
Q Consensus 612 ---~~~~~~v~~l~~~l~t~~~---~gaDL~~Lc~~a~~ls~~----------~~~~~V~~A~~~~l~~~~~~~v~--~~ 673 (1023)
-++++-++.+-++...... ...+|..|.++...+..+ .....+.... .++....+... -.
T Consensus 374 ~dR~LPDKAIDLiDeA~a~~~l~~~~p~~l~~~~~~~~~l~~e~~~~~~e~~~~~k~~~~~~~--~~~~~~~~~~~~~~~ 451 (786)
T COG0542 374 PDRFLPDKAIDLLDEAGARVRLEIDKPEELDELERELAQLEIEKEALEREQDEKEKKLIDEII--KLKEGRIPELEKELE 451 (786)
T ss_pred ccCCCCchHHHHHHHHHHHHHhcccCCcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH--HHhhhhhhhHHHHHh
Confidence 0112222222221111111 122333322111110000 0000000000 00000000000 00
Q ss_pred ceeeCHHHHHHHHHHhhhhhhccCCCcccccccchhhhhhhhcccccCCCCCCcccccccChHHHHHHHHHHHHcccCCc
Q 001707 674 RLHLPRESLEIAILRLKEQETASRKPTQNLKNLAKDEYESNFVSAVVPPGEIGVRFDDIGALEDVKKALNELVILPMRRP 753 (1023)
Q Consensus 674 kv~V~~~df~~Al~~l~p~~~~~~~~~~~~~~~~~~efe~~~~~~ii~~~e~~vtfdDIgGle~vk~~L~e~V~~pL~~p 753 (1023)
. .|+.+++...+.++... ++..+.+.+-++.+-.. ..--..|+|++.....+...|...
T Consensus 452 ~-~v~~~~Ia~vv~~~TgI---------Pv~~l~~~e~~kll~le-------~~L~~rViGQd~AV~avs~aIrra---- 510 (786)
T COG0542 452 A-EVDEDDIAEVVARWTGI---------PVAKLLEDEKEKLLNLE-------RRLKKRVIGQDEAVEAVSDAIRRA---- 510 (786)
T ss_pred h-ccCHHHHHHHHHHHHCC---------ChhhhchhhHHHHHHHH-------HHHhcceeChHHHHHHHHHHHHHH----
Confidence 0 15555555555444321 11112222211110000 001135789999999999888542
Q ss_pred hhhccCCC---CCCCceEEEEcCCCChHHHHHHHHHHHhC---CcEEEEeccccchh-----hhhhHHHHH-----HHHH
Q 001707 754 DLFSRGNL---LRPCKGILLFGPPGTGKTLLAKALATEAG---ANFISITGSTLTSK-----WFGDAEKLT-----KALF 817 (1023)
Q Consensus 754 elf~~~gl---i~p~~gVLL~GPPGTGKT~LArAIA~elg---~~fi~vs~seL~s~-----~~ge~e~~I-----~~lF 817 (1023)
+.|+ .+|..++||.||.|+|||-||+++|..+. -.++.+++++++.+ ..|.+..+| -.+-
T Consensus 511 ----RaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHsVSrLIGaPPGYVGyeeGG~LT 586 (786)
T COG0542 511 ----RAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHSVSRLIGAPPGYVGYEEGGQLT 586 (786)
T ss_pred ----hcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHHHHHHHHhCCCCCCceeccccchh
Confidence 3333 34545678999999999999999999995 79999999988543 222221111 1223
Q ss_pred HHHhhcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhcCccCC-------CCceEEEEEecCCCC---------
Q 001707 818 SFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSK-------ESQKILILGATNRPF--------- 881 (1023)
Q Consensus 818 ~~A~k~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~-------~~~~VlVIaTTN~p~--------- 881 (1023)
...++.+.|||++|||+.- ...+++.|++.||.-.-. .-.+.+||+|||--.
T Consensus 587 EaVRr~PySViLlDEIEKA------------HpdV~nilLQVlDdGrLTD~~Gr~VdFrNtiIImTSN~Gs~~i~~~~~~ 654 (786)
T COG0542 587 EAVRRKPYSVILLDEIEKA------------HPDVFNLLLQVLDDGRLTDGQGRTVDFRNTIIIMTSNAGSEEILRDADG 654 (786)
T ss_pred HhhhcCCCeEEEechhhhc------------CHHHHHHHHHHhcCCeeecCCCCEEecceeEEEEecccchHHHHhhccc
Confidence 3345666799999999873 356778888888743222 123678999997220
Q ss_pred -------------------CCcHHHHhhcCCceeecCCCHHHHHHHHHHHHhcc-------ccC---CccCHHHHHHHcc
Q 001707 882 -------------------DLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHE-------SLE---SGFQFNELANATE 932 (1023)
Q Consensus 882 -------------------~Ld~aLlrRFd~~I~V~lPd~eeR~~ILk~~L~~~-------~l~---~dvdl~~LA~~Te 932 (1023)
...|+|+.|++.+|.|.+.+.+...+|+...+... .+. ++.....|+...-
T Consensus 655 ~~~~~~~~~~~~v~~~l~~~F~PEFLNRid~II~F~~L~~~~l~~Iv~~~L~~l~~~L~~~~i~l~~s~~a~~~l~~~gy 734 (786)
T COG0542 655 DDFADKEALKEAVMEELKKHFRPEFLNRIDEIIPFNPLSKEVLERIVDLQLNRLAKRLAERGITLELSDEAKDFLAEKGY 734 (786)
T ss_pred cccchhhhHHHHHHHHHHhhCCHHHHhhcccEEeccCCCHHHHHHHHHHHHHHHHHHHHhCCceEEECHHHHHHHHHhcc
Confidence 04468888999999999999999999998877632 111 1122344454432
Q ss_pred --CCcHHHHHHHHHHHHHHHHHH
Q 001707 933 --GYSGSDLKNLCIAAAYRPVQE 953 (1023)
Q Consensus 933 --GySgaDL~~L~~~Aa~~Airr 953 (1023)
.|-++-|+.+++.-....+.+
T Consensus 735 d~~~GARpL~R~Iq~~i~~~La~ 757 (786)
T COG0542 735 DPEYGARPLRRAIQQEIEDPLAD 757 (786)
T ss_pred CCCcCchHHHHHHHHHHHHHHHH
Confidence 455566666665555444433
No 96
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.51 E-value=3.7e-13 Score=158.57 Aligned_cols=182 Identities=19% Similarity=0.202 Sum_probs=126.6
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC---------------
Q 001707 727 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGA--------------- 791 (1023)
Q Consensus 727 vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~elg~--------------- 791 (1023)
.+|+|++|++.+++.|...+.. + +.++++||+||||||||++|+++|+.++.
T Consensus 11 ~~~~divGq~~i~~~L~~~i~~-----------~--~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c 77 (472)
T PRK14962 11 KTFSEVVGQDHVKKLIINALKK-----------N--SISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRAC 77 (472)
T ss_pred CCHHHccCcHHHHHHHHHHHHc-----------C--CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHH
Confidence 5799999999999999887643 1 24457999999999999999999999864
Q ss_pred ---------cEEEEeccccchhhhhhHHHHHHHHHHHHhh----cCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHh
Q 001707 792 ---------NFISITGSTLTSKWFGDAEKLTKALFSFASK----LAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMS 858 (1023)
Q Consensus 792 ---------~fi~vs~seL~s~~~ge~e~~I~~lF~~A~k----~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~ 858 (1023)
.++.++++.-. .-..++.+...+.. ....||||||+|.|.. ...+.|+.
T Consensus 78 ~~i~~g~~~dv~el~aa~~~------gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~------------~a~~~LLk 139 (472)
T PRK14962 78 RSIDEGTFMDVIELDAASNR------GIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTK------------EAFNALLK 139 (472)
T ss_pred HHHhcCCCCccEEEeCcccC------CHHHHHHHHHHHhhChhcCCeEEEEEEChHHhHH------------HHHHHHHH
Confidence 34555443211 12234444444332 2346999999999841 12345566
Q ss_pred hhcCccCCCCceEEEEEecCCCCCCcHHHHhhcCCceeecCCCHHHHHHHHHHHHhccccC-CccCHHHHHHHccCCcHH
Q 001707 859 AWDGLRSKESQKILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLE-SGFQFNELANATEGYSGS 937 (1023)
Q Consensus 859 ~Ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~V~lPd~eeR~~ILk~~L~~~~l~-~dvdl~~LA~~TeGySga 937 (1023)
.++.. +..+++|++|+.+..+++++++|| ..+.+.+|+.++...+++..+...++. ++..+..|+..+.| ..+
T Consensus 140 ~LE~p----~~~vv~Ilattn~~kl~~~L~SR~-~vv~f~~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~~s~G-dlR 213 (472)
T PRK14962 140 TLEEP----PSHVVFVLATTNLEKVPPTIISRC-QVIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKRASG-GLR 213 (472)
T ss_pred HHHhC----CCcEEEEEEeCChHhhhHHHhcCc-EEEEECCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCC-CHH
Confidence 65542 235666667767788999999999 578999999999999999988765543 34457778887765 445
Q ss_pred HHHHHHHH
Q 001707 938 DLKNLCIA 945 (1023)
Q Consensus 938 DL~~L~~~ 945 (1023)
++.++++.
T Consensus 214 ~aln~Le~ 221 (472)
T PRK14962 214 DALTMLEQ 221 (472)
T ss_pred HHHHHHHH
Confidence 55555443
No 97
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.51 E-value=2.6e-13 Score=155.69 Aligned_cols=178 Identities=26% Similarity=0.366 Sum_probs=134.1
Q ss_pred ccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccch-hhhh-hH
Q 001707 732 IGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTS-KWFG-DA 809 (1023)
Q Consensus 732 IgGle~vk~~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~elg~~fi~vs~seL~s-~~~g-e~ 809 (1023)
|+|+++++..+..++...+.+..+.....--.++++|||+||||||||++|+++|..++.+|+.+++..+.. .|.| +.
T Consensus 14 IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~dv 93 (441)
T TIGR00390 14 IIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDV 93 (441)
T ss_pred ccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccCCH
Confidence 789999999999888765554433222111234589999999999999999999999999999999988763 6777 56
Q ss_pred HHHHHHHHHHHh--------------------------------------------------------------------
Q 001707 810 EKLTKALFSFAS-------------------------------------------------------------------- 821 (1023)
Q Consensus 810 e~~I~~lF~~A~-------------------------------------------------------------------- 821 (1023)
+..++.+|..|.
T Consensus 94 E~i~r~l~e~A~~~i~~d~i~~~r~~a~~~ae~riv~~Ll~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei~ 173 (441)
T TIGR00390 94 ESMVRDLTDAAVKLVKEEAIEKVRDRAEELAEERIVDVLLPPAKNQWGQTEQQQEPESAREAFRKKLREGELDDKEIEID 173 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCccccccccccccchHHHHHHHHHHHhcCCccCcEEEEe
Confidence 777777776650
Q ss_pred -----------------------------------------------------------------------hcCCeEEEe
Q 001707 822 -----------------------------------------------------------------------KLAPVIIFV 830 (1023)
Q Consensus 822 -----------------------------------------------------------------------k~~PsIIfI 830 (1023)
.-+-.||||
T Consensus 174 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ea~~~l~~~e~~~lid~~~v~~~a~~~~e~~GIVfi 253 (441)
T TIGR00390 174 VSAKMPSGIEIMAPPGMEEMTMQLQSLFQNLGGQKKKKRKLKIKDAKKALIAEEAAKLVDPEEIKQEAIDAVEQSGIIFI 253 (441)
T ss_pred ecCCCCCccccCCCcchhHHHhhHHHHHHhhcCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEEE
Confidence 013469999
Q ss_pred ccchhhhhccCCCchhHHHHHHHHHHHhhhcCccC------CCCceEEEEEec----CCCCCCcHHHHhhcCCceeecCC
Q 001707 831 DEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRS------KESQKILILGAT----NRPFDLDDAVIRRLPRRIYVDLP 900 (1023)
Q Consensus 831 DEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~------~~~~~VlVIaTT----N~p~~Ld~aLlrRFd~~I~V~lP 900 (1023)
||||.++....+.........+.+.||..++|-.. -...++++||+. ..|.+|-|+|.-||+.++.+..+
T Consensus 254 DEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~GR~Pi~v~L~~L 333 (441)
T TIGR00390 254 DEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQGRFPIRVELQAL 333 (441)
T ss_pred EchhhhcccCCCCCCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHhCccceEEECCCC
Confidence 99999986553222222234467788888887321 244678999876 46788999999999999999999
Q ss_pred CHHHHHHHH
Q 001707 901 DAENRMKIL 909 (1023)
Q Consensus 901 d~eeR~~IL 909 (1023)
+.++...||
T Consensus 334 ~~edL~rIL 342 (441)
T TIGR00390 334 TTDDFERIL 342 (441)
T ss_pred CHHHHHHHh
Confidence 999999988
No 98
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.50 E-value=2.6e-13 Score=157.41 Aligned_cols=234 Identities=24% Similarity=0.323 Sum_probs=151.1
Q ss_pred CCCCCccccc-ccChHHHHHHHHHHHHcccCCchhhcc--CCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEec
Q 001707 722 PGEIGVRFDD-IGALEDVKKALNELVILPMRRPDLFSR--GNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITG 798 (1023)
Q Consensus 722 ~~e~~vtfdD-IgGle~vk~~L~e~V~~pL~~pelf~~--~gli~p~~gVLL~GPPGTGKT~LArAIA~elg~~fi~vs~ 798 (1023)
|.++...+++ |+|++.+++.|...+..+..+...... .....+..+|||+||||||||++|+++|..++.+|+.+++
T Consensus 62 p~~i~~~L~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~ 141 (412)
T PRK05342 62 PKEIKAHLDQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADA 141 (412)
T ss_pred HHHHHHHHhhHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecch
Confidence 3444445654 799999999998887655443321101 0112245789999999999999999999999999999999
Q ss_pred cccch-hhhhhH-HHHHHHHHHH----HhhcCCeEEEeccchhhhhccCCCc-hh-HHHHHHHHHHHhhhcCcc------
Q 001707 799 STLTS-KWFGDA-EKLTKALFSF----ASKLAPVIIFVDEVDSLLGARGGAF-EH-EATRRMRNEFMSAWDGLR------ 864 (1023)
Q Consensus 799 seL~s-~~~ge~-e~~I~~lF~~----A~k~~PsIIfIDEID~L~~~r~~~~-~~-e~~~ril~~LL~~Ldgl~------ 864 (1023)
..+.. .|+|.. +..+..++.. ..+..++||||||||.+.....+.. .. .....+.+.||..|++..
T Consensus 142 ~~l~~~gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~~ 221 (412)
T PRK05342 142 TTLTEAGYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQ 221 (412)
T ss_pred hhcccCCcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcCeEEeCCC
Confidence 88753 577753 4445555443 2345789999999999976533211 11 112346677888887532
Q ss_pred ---CCCCceEEEEEecCCCC----------------------------------------------------CCcHHHHh
Q 001707 865 ---SKESQKILILGATNRPF----------------------------------------------------DLDDAVIR 889 (1023)
Q Consensus 865 ---~~~~~~VlVIaTTN~p~----------------------------------------------------~Ld~aLlr 889 (1023)
..+....++|.|+|-.+ .+.|+|+.
T Consensus 222 gg~~~~~~~~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEflg 301 (412)
T PRK05342 222 GGRKHPQQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFIG 301 (412)
T ss_pred CCcCcCCCCeEEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHHhC
Confidence 11122345555555411 04567778
Q ss_pred hcCCceeecCCCHHHHHHHHHH----HHh-------ccccC---CccCHHHHHHH--ccCCcHHHHHHHHHHHHHHHHHH
Q 001707 890 RLPRRIYVDLPDAENRMKILRI----FLA-------HESLE---SGFQFNELANA--TEGYSGSDLKNLCIAAAYRPVQE 953 (1023)
Q Consensus 890 RFd~~I~V~lPd~eeR~~ILk~----~L~-------~~~l~---~dvdl~~LA~~--TeGySgaDL~~L~~~Aa~~Airr 953 (1023)
|++.++.+.+.+.++..+|+.. +++ ..++. ++..+..||+. ...+-.+-|+.+++......+.+
T Consensus 302 Rld~iv~f~~L~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L~~t~~al~~Ia~~~~~~~~GAR~Lrriie~~l~~~~~~ 381 (412)
T PRK05342 302 RLPVVATLEELDEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDEALEAIAKKAIERKTGARGLRSILEEILLDVMFE 381 (412)
T ss_pred CCCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHhCCCCCCCCchHHHHHHHHhHHHHHh
Confidence 9999999999999999999873 322 12221 22335667765 34566778888877777666655
Q ss_pred HH
Q 001707 954 LL 955 (1023)
Q Consensus 954 ~l 955 (1023)
+.
T Consensus 382 ~p 383 (412)
T PRK05342 382 LP 383 (412)
T ss_pred cc
Confidence 43
No 99
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.50 E-value=1.1e-12 Score=152.45 Aligned_cols=180 Identities=24% Similarity=0.364 Sum_probs=124.2
Q ss_pred cccccccChHHHHHH---HHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccch
Q 001707 727 VRFDDIGALEDVKKA---LNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTS 803 (1023)
Q Consensus 727 vtfdDIgGle~vk~~---L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~elg~~fi~vs~seL~s 803 (1023)
.+|+|++|.+.+... |..++.. ....++||+||||||||+||+++|+.++.+|+.+++....
T Consensus 9 ~~l~d~vGq~~~v~~~~~L~~~i~~--------------~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~~- 73 (413)
T PRK13342 9 KTLDEVVGQEHLLGPGKPLRRMIEA--------------GRLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTSG- 73 (413)
T ss_pred CCHHHhcCcHHHhCcchHHHHHHHc--------------CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccc-
Confidence 468999999988666 7776632 1224799999999999999999999999999999875421
Q ss_pred hhhhhHHHHHHHHHHHHh----hcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhcCccCCCCceEEEEEec--
Q 001707 804 KWFGDAEKLTKALFSFAS----KLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGAT-- 877 (1023)
Q Consensus 804 ~~~ge~e~~I~~lF~~A~----k~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~~~~~VlVIaTT-- 877 (1023)
...++.++..+. .....||||||+|.+... ..+.|+..++. ..+++|++|
T Consensus 74 ------~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~~------------~q~~LL~~le~------~~iilI~att~ 129 (413)
T PRK13342 74 ------VKDLREVIEEARQRRSAGRRTILFIDEIHRFNKA------------QQDALLPHVED------GTITLIGATTE 129 (413)
T ss_pred ------HHHHHHHHHHHHHhhhcCCceEEEEechhhhCHH------------HHHHHHHHhhc------CcEEEEEeCCC
Confidence 123344444432 235689999999998421 12344444432 346666654
Q ss_pred CCCCCCcHHHHhhcCCceeecCCCHHHHHHHHHHHHhcc--cc--CCccCHHHHHHHccCCcHHHHHHHHHHHH
Q 001707 878 NRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHE--SL--ESGFQFNELANATEGYSGSDLKNLCIAAA 947 (1023)
Q Consensus 878 N~p~~Ld~aLlrRFd~~I~V~lPd~eeR~~ILk~~L~~~--~l--~~dvdl~~LA~~TeGySgaDL~~L~~~Aa 947 (1023)
|....+++++++|| ..+.+++++.++...+++..+... ++ ..+..+..|+..+.| ..+.+.++++.++
T Consensus 130 n~~~~l~~aL~SR~-~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~G-d~R~aln~Le~~~ 201 (413)
T PRK13342 130 NPSFEVNPALLSRA-QVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANG-DARRALNLLELAA 201 (413)
T ss_pred ChhhhccHHHhccc-eeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 34457999999999 688999999999999999887642 11 123335677777754 5666666666554
No 100
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.50 E-value=2.1e-13 Score=171.02 Aligned_cols=164 Identities=25% Similarity=0.390 Sum_probs=125.3
Q ss_pred ccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEEe
Q 001707 728 RFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEA----------GANFISIT 797 (1023)
Q Consensus 728 tfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~el----------g~~fi~vs 797 (1023)
.+++++|.+.....+.+.+.. +...+++|+||||||||++|+++|..+ +.+++.++
T Consensus 176 ~l~~vigr~~ei~~~i~iL~r--------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~ 241 (857)
T PRK10865 176 KLDPVIGRDEEIRRTIQVLQR--------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALD 241 (857)
T ss_pred CCCcCCCCHHHHHHHHHHHhc--------------CCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEe
Confidence 578899999876666665421 122469999999999999999999988 78899998
Q ss_pred ccccc--hhhhhhHHHHHHHHHHHHhh-cCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhcCccCCCCceEEEE
Q 001707 798 GSTLT--SKWFGDAEKLTKALFSFASK-LAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILIL 874 (1023)
Q Consensus 798 ~seL~--s~~~ge~e~~I~~lF~~A~k-~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~~~~~VlVI 874 (1023)
+..+. .++.|+.+..++.+|..+.+ ..++||||||++.|.+.....+..... +.|...+ ....+.+|
T Consensus 242 l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~----~~lkp~l------~~g~l~~I 311 (857)
T PRK10865 242 MGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAG----NMLKPAL------ARGELHCV 311 (857)
T ss_pred hhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHH----HHhcchh------hcCCCeEE
Confidence 88876 45788999999999998654 568999999999998665332222221 2222222 34578999
Q ss_pred EecCCCC-----CCcHHHHhhcCCceeecCCCHHHHHHHHHHHHhcc
Q 001707 875 GATNRPF-----DLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHE 916 (1023)
Q Consensus 875 aTTN~p~-----~Ld~aLlrRFd~~I~V~lPd~eeR~~ILk~~L~~~ 916 (1023)
|||+..+ .+|+++.|||. .|.++.|+.+++..||+.+....
T Consensus 312 gaTt~~e~r~~~~~d~al~rRf~-~i~v~eP~~~~~~~iL~~l~~~~ 357 (857)
T PRK10865 312 GATTLDEYRQYIEKDAALERRFQ-KVFVAEPSVEDTIAILRGLKERY 357 (857)
T ss_pred EcCCCHHHHHHhhhcHHHHhhCC-EEEeCCCCHHHHHHHHHHHhhhh
Confidence 9998775 48999999996 68899999999999999876543
No 101
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.49 E-value=2.5e-13 Score=170.00 Aligned_cols=184 Identities=23% Similarity=0.345 Sum_probs=134.6
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEE
Q 001707 727 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEA----------GANFISI 796 (1023)
Q Consensus 727 vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~el----------g~~fi~v 796 (1023)
-++++++|.+.....+.+.+.. ....++||+||||||||++|+.+|+.+ +.+++.+
T Consensus 184 ~~ld~~iGr~~ei~~~i~~l~r--------------~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l 249 (852)
T TIGR03345 184 GKIDPVLGRDDEIRQMIDILLR--------------RRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSL 249 (852)
T ss_pred CCCCcccCCHHHHHHHHHHHhc--------------CCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEe
Confidence 3678999999876666554411 122479999999999999999999986 2557888
Q ss_pred eccccch--hhhhhHHHHHHHHHHHHhhc-CCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhcCccCCCCceEEE
Q 001707 797 TGSTLTS--KWFGDAEKLTKALFSFASKL-APVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILI 873 (1023)
Q Consensus 797 s~seL~s--~~~ge~e~~I~~lF~~A~k~-~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~~~~~VlV 873 (1023)
++..+.. .+.|+.+..++.+|..++.. .++|||||||+.|.+.+......... +.|.-.+ ....+.+
T Consensus 250 ~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~----n~Lkp~l------~~G~l~~ 319 (852)
T TIGR03345 250 DLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAA----NLLKPAL------ARGELRT 319 (852)
T ss_pred ehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHH----HHhhHHh------hCCCeEE
Confidence 8877763 57889999999999998753 58999999999998755322211111 2222222 2456889
Q ss_pred EEecCCC-----CCCcHHHHhhcCCceeecCCCHHHHHHHHHHHHhccc----c-CCccCHHHHHHHccCCc
Q 001707 874 LGATNRP-----FDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHES----L-ESGFQFNELANATEGYS 935 (1023)
Q Consensus 874 IaTTN~p-----~~Ld~aLlrRFd~~I~V~lPd~eeR~~ILk~~L~~~~----l-~~dvdl~~LA~~TeGyS 935 (1023)
||||+.. ..+|++|.||| ..|.|+.|+.+++..||+.+..... + ..+..+..++..+.+|-
T Consensus 320 IgaTT~~e~~~~~~~d~AL~rRf-~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi 390 (852)
T TIGR03345 320 IAATTWAEYKKYFEKDPALTRRF-QVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYI 390 (852)
T ss_pred EEecCHHHHhhhhhccHHHHHhC-eEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHccccc
Confidence 9999764 34999999999 4899999999999999876654322 2 14555778888888764
No 102
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.49 E-value=9e-13 Score=150.86 Aligned_cols=184 Identities=22% Similarity=0.268 Sum_probs=129.8
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc--------------
Q 001707 727 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGAN-------------- 792 (1023)
Q Consensus 727 vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~elg~~-------------- 792 (1023)
.+|++|+|++.+++.|+..+.. + +.++.+||+||||+|||++|+++|+.+.+.
T Consensus 13 ~~~~~iiGq~~~~~~l~~~~~~-----------~--~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c 79 (363)
T PRK14961 13 QYFRDIIGQKHIVTAISNGLSL-----------G--RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIIC 79 (363)
T ss_pred CchhhccChHHHHHHHHHHHHc-----------C--CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHH
Confidence 5799999999999999888732 1 234578999999999999999999998532
Q ss_pred ----------EEEEeccccchhhhhhHHHHHHHHHHHHhhc----CCeEEEeccchhhhhccCCCchhHHHHHHHHHHHh
Q 001707 793 ----------FISITGSTLTSKWFGDAEKLTKALFSFASKL----APVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMS 858 (1023)
Q Consensus 793 ----------fi~vs~seL~s~~~ge~e~~I~~lF~~A~k~----~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~ 858 (1023)
++.+++.. ......++.+...+... ...|++|||+|.+.. ...+.|+.
T Consensus 80 ~~~~~~~~~d~~~~~~~~------~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~------------~a~naLLk 141 (363)
T PRK14961 80 KEIEKGLCLDLIEIDAAS------RTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSR------------HSFNALLK 141 (363)
T ss_pred HHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCH------------HHHHHHHH
Confidence 22222211 01123344555444322 246999999998831 22345666
Q ss_pred hhcCccCCCCceEEEEEecCCCCCCcHHHHhhcCCceeecCCCHHHHHHHHHHHHhccccC-CccCHHHHHHHccCCcHH
Q 001707 859 AWDGLRSKESQKILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLE-SGFQFNELANATEGYSGS 937 (1023)
Q Consensus 859 ~Ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~V~lPd~eeR~~ILk~~L~~~~l~-~dvdl~~LA~~TeGySga 937 (1023)
.++.. +..+.+|.+|+.++.+.+.+.+|+ ..+.+++|+.++..++++..+...+.. ++..+..++..+.| +.+
T Consensus 142 ~lEe~----~~~~~fIl~t~~~~~l~~tI~SRc-~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia~~s~G-~~R 215 (363)
T PRK14961 142 TLEEP----PQHIKFILATTDVEKIPKTILSRC-LQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHAHG-SMR 215 (363)
T ss_pred HHhcC----CCCeEEEEEcCChHhhhHHHHhhc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 66542 235666667777888999999998 578999999999999999988876643 34456778888776 777
Q ss_pred HHHHHHHHHH
Q 001707 938 DLKNLCIAAA 947 (1023)
Q Consensus 938 DL~~L~~~Aa 947 (1023)
++.++++.++
T Consensus 216 ~al~~l~~~~ 225 (363)
T PRK14961 216 DALNLLEHAI 225 (363)
T ss_pred HHHHHHHHHH
Confidence 7777776654
No 103
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.48 E-value=4.1e-12 Score=144.28 Aligned_cols=202 Identities=20% Similarity=0.250 Sum_probs=129.7
Q ss_pred ccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC---------CcEEEEeccc
Q 001707 730 DDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAG---------ANFISITGST 800 (1023)
Q Consensus 730 dDIgGle~vk~~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~elg---------~~fi~vs~se 800 (1023)
+++.|.++.++.|..++...+. + ..+.+++|+||||||||++++++++++. +.++.++|..
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~-------~---~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~ 84 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILR-------G---SRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQI 84 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHc-------C---CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCC
Confidence 4788999999999888753221 1 1235799999999999999999998762 5788888865
Q ss_pred cchhh--h----------h--------hHHHHHHHHHHHHh-hcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhh
Q 001707 801 LTSKW--F----------G--------DAEKLTKALFSFAS-KLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSA 859 (1023)
Q Consensus 801 L~s~~--~----------g--------e~e~~I~~lF~~A~-k~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~ 859 (1023)
..+.+ . + ........++.... ...+.||+|||+|.+.... ..++.+|+..
T Consensus 85 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~---------~~~L~~l~~~ 155 (365)
T TIGR02928 85 LDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDD---------DDLLYQLSRA 155 (365)
T ss_pred CCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCC---------cHHHHhHhcc
Confidence 43210 0 0 11223344455443 3457899999999997221 1233444433
Q ss_pred hcCccCCCCceEEEEEecCCCC---CCcHHHHhhcC-CceeecCCCHHHHHHHHHHHHhcc---ccCCccCHHHHHH---
Q 001707 860 WDGLRSKESQKILILGATNRPF---DLDDAVIRRLP-RRIYVDLPDAENRMKILRIFLAHE---SLESGFQFNELAN--- 929 (1023)
Q Consensus 860 Ldgl~~~~~~~VlVIaTTN~p~---~Ld~aLlrRFd-~~I~V~lPd~eeR~~ILk~~L~~~---~l~~dvdl~~LA~--- 929 (1023)
++. ....+.++.+|+++|.+. .+++.+.+||. ..+.+++++.++..+|++..+... ....+..+..++.
T Consensus 156 ~~~-~~~~~~~v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~ 234 (365)
T TIGR02928 156 RSN-GDLDNAKVGVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAA 234 (365)
T ss_pred ccc-cCCCCCeEEEEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHH
Confidence 111 112335788999998876 47888888885 578999999999999999887621 1112222333333
Q ss_pred HccCCcHHHHHHHHHHHHHHHHH
Q 001707 930 ATEGYSGSDLKNLCIAAAYRPVQ 952 (1023)
Q Consensus 930 ~TeGySgaDL~~L~~~Aa~~Air 952 (1023)
.+.| ..+.+.++|..|+..|..
T Consensus 235 ~~~G-d~R~al~~l~~a~~~a~~ 256 (365)
T TIGR02928 235 QEHG-DARKAIDLLRVAGEIAER 256 (365)
T ss_pred HhcC-CHHHHHHHHHHHHHHHHH
Confidence 3345 345556677777776654
No 104
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.48 E-value=1e-12 Score=157.49 Aligned_cols=185 Identities=23% Similarity=0.249 Sum_probs=134.3
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC---------------
Q 001707 727 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGA--------------- 791 (1023)
Q Consensus 727 vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~elg~--------------- 791 (1023)
.+|++|+|.+.+++.|..++.. + +.++.+||+||+|+|||++|+++|+.+++
T Consensus 12 ktFddVIGQe~vv~~L~~aI~~-----------g--rl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC 78 (702)
T PRK14960 12 RNFNELVGQNHVSRALSSALER-----------G--RLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATC 78 (702)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc-----------C--CCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHH
Confidence 5799999999999999988742 1 33568899999999999999999999865
Q ss_pred ---------cEEEEeccccchhhhhhHHHHHHHHHHHHh----hcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHh
Q 001707 792 ---------NFISITGSTLTSKWFGDAEKLTKALFSFAS----KLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMS 858 (1023)
Q Consensus 792 ---------~fi~vs~seL~s~~~ge~e~~I~~lF~~A~----k~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~ 858 (1023)
.++.+++++-. .-..++.+...+. .....|+||||+|.|.. ...+.|+.
T Consensus 79 ~~I~~g~hpDviEIDAAs~~------~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~------------~A~NALLK 140 (702)
T PRK14960 79 KAVNEGRFIDLIEIDAASRT------KVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLST------------HSFNALLK 140 (702)
T ss_pred HHHhcCCCCceEEecccccC------CHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCH------------HHHHHHHH
Confidence 34444443211 1223344443332 22356999999999842 23456666
Q ss_pred hhcCccCCCCceEEEEEecCCCCCCcHHHHhhcCCceeecCCCHHHHHHHHHHHHhccccC-CccCHHHHHHHccCCcHH
Q 001707 859 AWDGLRSKESQKILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLE-SGFQFNELANATEGYSGS 937 (1023)
Q Consensus 859 ~Ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~V~lPd~eeR~~ILk~~L~~~~l~-~dvdl~~LA~~TeGySga 937 (1023)
.++.. ...+.+|.+|+.+..+...+++|+ ..+.|..++.++...+++.++..+++. .+..+..||..+.| +.+
T Consensus 141 tLEEP----P~~v~FILaTtd~~kIp~TIlSRC-q~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~~S~G-dLR 214 (702)
T PRK14960 141 TLEEP----PEHVKFLFATTDPQKLPITVISRC-LQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQG-SLR 214 (702)
T ss_pred HHhcC----CCCcEEEEEECChHhhhHHHHHhh-heeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 66543 245677777888888999999999 578999999999999999998877654 34457778888776 778
Q ss_pred HHHHHHHHHHH
Q 001707 938 DLKNLCIAAAY 948 (1023)
Q Consensus 938 DL~~L~~~Aa~ 948 (1023)
++.+++..+..
T Consensus 215 dALnLLDQaIa 225 (702)
T PRK14960 215 DALSLTDQAIA 225 (702)
T ss_pred HHHHHHHHHHH
Confidence 88888766554
No 105
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.47 E-value=7.2e-13 Score=165.98 Aligned_cols=185 Identities=25% Similarity=0.339 Sum_probs=138.7
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEE
Q 001707 727 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEA----------GANFISI 796 (1023)
Q Consensus 727 vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~el----------g~~fi~v 796 (1023)
-.+++++|.++.+..+.+.+.. ....++||+||||||||++|+++|..+ +.+++.+
T Consensus 176 ~~~~~~igr~~ei~~~~~~L~r--------------~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l 241 (821)
T CHL00095 176 GNLDPVIGREKEIERVIQILGR--------------RTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITL 241 (821)
T ss_pred CCCCCCCCcHHHHHHHHHHHcc--------------cccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEe
Confidence 3578899999999999887632 233579999999999999999999987 3789999
Q ss_pred eccccc--hhhhhhHHHHHHHHHHHHhhcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhcCccCCCCceEEEE
Q 001707 797 TGSTLT--SKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILIL 874 (1023)
Q Consensus 797 s~seL~--s~~~ge~e~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~~~~~VlVI 874 (1023)
++..+. .+|.|+.+..++.+|..+....++||||||||.|.+.....+..... +.|...+ ....+.+|
T Consensus 242 ~~~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a----~lLkp~l------~rg~l~~I 311 (821)
T CHL00095 242 DIGLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAA----NILKPAL------ARGELQCI 311 (821)
T ss_pred eHHHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHH----HHhHHHH------hCCCcEEE
Confidence 988876 46788999999999999988889999999999998765432211111 2222222 23468899
Q ss_pred EecCCCC-----CCcHHHHhhcCCceeecCCCHHHHHHHHHHHHhc----ccc-CCccCHHHHHHHccCCcH
Q 001707 875 GATNRPF-----DLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAH----ESL-ESGFQFNELANATEGYSG 936 (1023)
Q Consensus 875 aTTN~p~-----~Ld~aLlrRFd~~I~V~lPd~eeR~~ILk~~L~~----~~l-~~dvdl~~LA~~TeGySg 936 (1023)
|+|+..+ ..++++.+||. .|.++.|+.++...|++.+... ..+ .++..+..++..+.+|.+
T Consensus 312 gaTt~~ey~~~ie~D~aL~rRf~-~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~yi~ 382 (821)
T CHL00095 312 GATTLDEYRKHIEKDPALERRFQ-PVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQYIA 382 (821)
T ss_pred EeCCHHHHHHHHhcCHHHHhcce-EEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCc
Confidence 9988653 47899999995 6889999999999998865432 222 234447777888887754
No 106
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.47 E-value=5.9e-13 Score=152.83 Aligned_cols=179 Identities=27% Similarity=0.400 Sum_probs=134.3
Q ss_pred ccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccch-hhhh-hH
Q 001707 732 IGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTS-KWFG-DA 809 (1023)
Q Consensus 732 IgGle~vk~~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~elg~~fi~vs~seL~s-~~~g-e~ 809 (1023)
|+|++.++..+..++...+++..+......-..+.+|||+||||||||+||+++|..++.+|+.++++.+.. .|.| +.
T Consensus 17 IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~d~ 96 (443)
T PRK05201 17 IIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDV 96 (443)
T ss_pred cCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccCCH
Confidence 789999999999988664444322211111123579999999999999999999999999999999988874 6888 55
Q ss_pred HHHHHHHHHHHh--------------------------------------------------------------------
Q 001707 810 EKLTKALFSFAS-------------------------------------------------------------------- 821 (1023)
Q Consensus 810 e~~I~~lF~~A~-------------------------------------------------------------------- 821 (1023)
+..++.+|..|.
T Consensus 97 e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~ri~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei~ 176 (443)
T PRK05201 97 ESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNNWGEEEEKEEISATRQKFRKKLREGELDDKEIEIE 176 (443)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCccccccchhhhHHHHHHHHHHHcCCcCCcEEEEE
Confidence 777777777761
Q ss_pred --h--------------------------------------------------------------------cCCeEEEec
Q 001707 822 --K--------------------------------------------------------------------LAPVIIFVD 831 (1023)
Q Consensus 822 --k--------------------------------------------------------------------~~PsIIfID 831 (1023)
. -+-.|||||
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eA~~~l~~~e~~~lid~~~v~~~ai~~ae~~GIVfiD 256 (443)
T PRK05201 177 VAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGPKKKKKRKLKVKEARKILIEEEAAKLIDMEEIKQEAIERVEQNGIVFID 256 (443)
T ss_pred ecCCCCcccCCCCcchhHHHHHHHHHHHhhCCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEEEE
Confidence 0 134699999
Q ss_pred cchhhhhccCCCchhHHHHHHHHHHHhhhcCccC------CCCceEEEEEec----CCCCCCcHHHHhhcCCceeecCCC
Q 001707 832 EVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRS------KESQKILILGAT----NRPFDLDDAVIRRLPRRIYVDLPD 901 (1023)
Q Consensus 832 EID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~------~~~~~VlVIaTT----N~p~~Ld~aLlrRFd~~I~V~lPd 901 (1023)
|||.++....+.........+.+.||..++|-.. -...++++||+. ..|++|-|+|+.||+.++.+..++
T Consensus 257 EiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~GR~Pi~v~L~~L~ 336 (443)
T PRK05201 257 EIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQGRFPIRVELDALT 336 (443)
T ss_pred cchhhcccCCCCCCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHhCccceEEECCCCC
Confidence 9999986653322222234467788888887321 134678999876 467888999999999999999999
Q ss_pred HHHHHHHHH
Q 001707 902 AENRMKILR 910 (1023)
Q Consensus 902 ~eeR~~ILk 910 (1023)
.++..+||.
T Consensus 337 ~~dL~~ILt 345 (443)
T PRK05201 337 EEDFVRILT 345 (443)
T ss_pred HHHHHHHhc
Confidence 999999883
No 107
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.47 E-value=2.1e-12 Score=151.31 Aligned_cols=169 Identities=21% Similarity=0.323 Sum_probs=111.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEeccccchhhhhhHHHHHHHHHHHHhhcCCeEEEeccchhhhhcc
Q 001707 766 KGILLFGPPGTGKTLLAKALATEA-----GANFISITGSTLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGAR 840 (1023)
Q Consensus 766 ~gVLL~GPPGTGKT~LArAIA~el-----g~~fi~vs~seL~s~~~ge~e~~I~~lF~~A~k~~PsIIfIDEID~L~~~r 840 (1023)
.+++||||+|+|||+|++++|+++ +..++++++.+++..+.......-..-|...++..+.+|+|||++.+.+..
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~~~~~~~~~~~~f~~~~~~~~dvLlIDDi~~l~~~~ 210 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNEFREKYRKKVDVLLIDDVQFLIGKT 210 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHhcccHHHHHHHHHhcCCEEEEechhhhcCcH
Confidence 459999999999999999999986 467888888877665443221111122444444468999999999885432
Q ss_pred CCCchhHHHHHHHHHHHhhhcCccCCCCceEEEEEecCCCCC---CcHHHHhhcCC--ceeecCCCHHHHHHHHHHHHhc
Q 001707 841 GGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPFD---LDDAVIRRLPR--RIYVDLPDAENRMKILRIFLAH 915 (1023)
Q Consensus 841 ~~~~~~e~~~ril~~LL~~Ldgl~~~~~~~VlVIaTTN~p~~---Ld~aLlrRFd~--~I~V~lPd~eeR~~ILk~~L~~ 915 (1023)
. .. .+|+..++.+.. ..+.+||++...|.. +.+.+.+||.. .+.+.+|+.+.|..|++..+..
T Consensus 211 ~------~q----~elf~~~n~l~~--~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~~~ 278 (440)
T PRK14088 211 G------VQ----TELFHTFNELHD--SGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARKMLEI 278 (440)
T ss_pred H------HH----HHHHHHHHHHHH--cCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHHHHHh
Confidence 1 11 122222222221 123556655566665 55678888853 5678899999999999999876
Q ss_pred cccC-CccCHHHHHHHccCCcHHHHHHHHHHHH
Q 001707 916 ESLE-SGFQFNELANATEGYSGSDLKNLCIAAA 947 (1023)
Q Consensus 916 ~~l~-~dvdl~~LA~~TeGySgaDL~~L~~~Aa 947 (1023)
..+. ++..+..||....| +.++|..++....
T Consensus 279 ~~~~l~~ev~~~Ia~~~~~-~~R~L~g~l~~l~ 310 (440)
T PRK14088 279 EHGELPEEVLNFVAENVDD-NLRRLRGAIIKLL 310 (440)
T ss_pred cCCCCCHHHHHHHHhcccc-CHHHHHHHHHHHH
Confidence 5443 34447778877775 7777777766543
No 108
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.47 E-value=1.4e-12 Score=157.87 Aligned_cols=184 Identities=25% Similarity=0.288 Sum_probs=132.1
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc--------------
Q 001707 727 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGAN-------------- 792 (1023)
Q Consensus 727 vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~elg~~-------------- 792 (1023)
.+|+||+|.+.+++.|...+.. + +.++.+||+||+|+|||++|+++|+.+++.
T Consensus 13 ~~f~divGQe~vv~~L~~~l~~----------~---rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C 79 (647)
T PRK07994 13 QTFAEVVGQEHVLTALANALDL----------G---RLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNC 79 (647)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc----------C---CCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHH
Confidence 5799999999999999988743 1 234568999999999999999999998652
Q ss_pred ----------EEEEeccccchhhhhhHHHHHHHHHHHHh----hcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHh
Q 001707 793 ----------FISITGSTLTSKWFGDAEKLTKALFSFAS----KLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMS 858 (1023)
Q Consensus 793 ----------fi~vs~seL~s~~~ge~e~~I~~lF~~A~----k~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~ 858 (1023)
|+.++...- .....++.+...+. .....|+||||+|.|. ....|.||.
T Consensus 80 ~~i~~g~~~D~ieidaas~------~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls------------~~a~NALLK 141 (647)
T PRK07994 80 REIEQGRFVDLIEIDAASR------TKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLS------------RHSFNALLK 141 (647)
T ss_pred HHHHcCCCCCceeeccccc------CCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCC------------HHHHHHHHH
Confidence 333333210 01122333333322 2345699999999984 233567777
Q ss_pred hhcCccCCCCceEEEEEecCCCCCCcHHHHhhcCCceeecCCCHHHHHHHHHHHHhccccC-CccCHHHHHHHccCCcHH
Q 001707 859 AWDGLRSKESQKILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLE-SGFQFNELANATEGYSGS 937 (1023)
Q Consensus 859 ~Ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~V~lPd~eeR~~ILk~~L~~~~l~-~dvdl~~LA~~TeGySga 937 (1023)
.|+.- ...+.+|.+|+.+..|.+.+++|+ ..+.|..++.++...+|+.++..+++. .+..+..|+..+.| +.+
T Consensus 142 tLEEP----p~~v~FIL~Tt~~~kLl~TI~SRC-~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia~~s~G-s~R 215 (647)
T PRK07994 142 TLEEP----PEHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLARAADG-SMR 215 (647)
T ss_pred HHHcC----CCCeEEEEecCCccccchHHHhhh-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 77653 346777777888889999999998 788999999999999999988766654 33446778888777 777
Q ss_pred HHHHHHHHHH
Q 001707 938 DLKNLCIAAA 947 (1023)
Q Consensus 938 DL~~L~~~Aa 947 (1023)
+..+++..|.
T Consensus 216 ~Al~lldqai 225 (647)
T PRK07994 216 DALSLTDQAI 225 (647)
T ss_pred HHHHHHHHHH
Confidence 7777776554
No 109
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.46 E-value=1.4e-12 Score=160.20 Aligned_cols=184 Identities=23% Similarity=0.249 Sum_probs=130.4
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcE-------------
Q 001707 727 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANF------------- 793 (1023)
Q Consensus 727 vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~elg~~f------------- 793 (1023)
.+|++|+|.+.++..|+.++.. + +.++.+||+||||||||++|+++|+.+++.-
T Consensus 13 ~tFddIIGQe~Iv~~LknaI~~----------~---rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC 79 (944)
T PRK14949 13 ATFEQMVGQSHVLHALTNALTQ----------Q---RLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSC 79 (944)
T ss_pred CCHHHhcCcHHHHHHHHHHHHh----------C---CCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHH
Confidence 5799999999999999988743 1 2345679999999999999999999986531
Q ss_pred -----------EEEeccccchhhhhhHHHHHHHHHHHHh----hcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHh
Q 001707 794 -----------ISITGSTLTSKWFGDAEKLTKALFSFAS----KLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMS 858 (1023)
Q Consensus 794 -----------i~vs~seL~s~~~ge~e~~I~~lF~~A~----k~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~ 858 (1023)
+.++... ......++.+...+. .....|+||||+|.|. ....+.|+.
T Consensus 80 ~~i~~g~~~DviEidAas------~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT------------~eAqNALLK 141 (944)
T PRK14949 80 VEIAQGRFVDLIEVDAAS------RTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLS------------RSSFNALLK 141 (944)
T ss_pred HHHhcCCCceEEEecccc------ccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcC------------HHHHHHHHH
Confidence 1122111 001122333333332 2334699999999983 234567777
Q ss_pred hhcCccCCCCceEEEEEecCCCCCCcHHHHhhcCCceeecCCCHHHHHHHHHHHHhccccC-CccCHHHHHHHccCCcHH
Q 001707 859 AWDGLRSKESQKILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLE-SGFQFNELANATEGYSGS 937 (1023)
Q Consensus 859 ~Ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~V~lPd~eeR~~ILk~~L~~~~l~-~dvdl~~LA~~TeGySga 937 (1023)
.|+.. ...+.+|.+|+.+..|.+.+++|+ ..+.|..++.++...+|+.++...++. .+..+..|+..+.| +.+
T Consensus 142 tLEEP----P~~vrFILaTTe~~kLl~TIlSRC-q~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~~S~G-d~R 215 (944)
T PRK14949 142 TLEEP----PEHVKFLLATTDPQKLPVTVLSRC-LQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAANG-SMR 215 (944)
T ss_pred HHhcc----CCCeEEEEECCCchhchHHHHHhh-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 77653 345667777888888999999999 678999999999999999888766543 33347778888877 777
Q ss_pred HHHHHHHHHH
Q 001707 938 DLKNLCIAAA 947 (1023)
Q Consensus 938 DL~~L~~~Aa 947 (1023)
++.++|..|.
T Consensus 216 ~ALnLLdQal 225 (944)
T PRK14949 216 DALSLTDQAI 225 (944)
T ss_pred HHHHHHHHHH
Confidence 8888876544
No 110
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.46 E-value=1.2e-12 Score=153.28 Aligned_cols=214 Identities=18% Similarity=0.216 Sum_probs=133.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccchhhhhhHHHHHHHHHHHHhhcCCeEEEeccchhhhhccCC
Q 001707 766 KGILLFGPPGTGKTLLAKALATEA---GANFISITGSTLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGG 842 (1023)
Q Consensus 766 ~gVLL~GPPGTGKT~LArAIA~el---g~~fi~vs~seL~s~~~ge~e~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~ 842 (1023)
.+++||||+|+|||+|++++++++ +..++++++..+...+...........|...+ ..+.+|+||||+.+.+...
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~~~~l~~~~~~~f~~~~-~~~dvLiIDDiq~l~~k~~- 219 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHLVSAIRSGEMQRFRQFY-RNVDALFIEDIEVFSGKGA- 219 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHHHHHHhcchHHHHHHHc-ccCCEEEEcchhhhcCChh-
Confidence 569999999999999999999976 68889998877655443322211122344433 3568999999999853321
Q ss_pred CchhHHHHHHHHHHHhhhcCccCCCCceEEEEEecCCCC---CCcHHHHhhcC--CceeecCCCHHHHHHHHHHHHhccc
Q 001707 843 AFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPF---DLDDAVIRRLP--RRIYVDLPDAENRMKILRIFLAHES 917 (1023)
Q Consensus 843 ~~~~e~~~ril~~LL~~Ldgl~~~~~~~VlVIaTTN~p~---~Ld~aLlrRFd--~~I~V~lPd~eeR~~ILk~~L~~~~ 917 (1023)
..+....+++.+. . ..+.+|++++..|. .+++.+.+||. ..+.+.+|+.++|..|++..+...+
T Consensus 220 --~qeelf~l~N~l~-------~--~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~ 288 (445)
T PRK12422 220 --TQEEFFHTFNSLH-------T--EGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERKAEALS 288 (445)
T ss_pred --hHHHHHHHHHHHH-------H--CCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHHHHHcC
Confidence 1122222222222 1 12345555545454 46789999996 5677888999999999999988765
Q ss_pred cC-CccCHHHHHHHccCCcHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhCCCCCCCCcCCCCHHHHHHHHHhhCCCccc
Q 001707 918 LE-SGFQFNELANATEGYSGSDLKNLCIAAAYR-PVQELLEEERKLFIQRGKNDAAPVLRPLKLEDFIQSKAKVGPSVAY 995 (1023)
Q Consensus 918 l~-~dvdl~~LA~~TeGySgaDL~~L~~~Aa~~-Airr~l~~e~~~~~~~~~~~~~~~~r~Lt~eDF~~Al~kv~PSvs~ 995 (1023)
+. ++..+..||....+ +.++|..++...+.. |..++ ..++|++++..+++..+-..-..
T Consensus 289 ~~l~~evl~~la~~~~~-dir~L~g~l~~l~~~~a~~~~------------------~~~~i~~~~~~~~l~~~~~~~~~ 349 (445)
T PRK12422 289 IRIEETALDFLIEALSS-NVKSLLHALTLLAKRVAYKKL------------------SHQLLYVDDIKALLHDVLEAAES 349 (445)
T ss_pred CCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHHHh------------------hCCCCCHHHHHHHHHHhhhcccC
Confidence 43 33345667776664 566666666555322 22211 11479999999999876221111
Q ss_pred chhhHH-HHHHHHHHhC
Q 001707 996 DAASMN-ELRKWNEQYG 1011 (1023)
Q Consensus 996 d~~~m~-el~kW~d~yG 1011 (1023)
.....+ -.+.|.+.||
T Consensus 350 ~~~t~~~I~~~Va~~~~ 366 (445)
T PRK12422 350 VRLTPSKIIRAVAQYYG 366 (445)
T ss_pred CCCCHHHHHHHHHHHhC
Confidence 111222 2458999999
No 111
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.46 E-value=1.1e-12 Score=157.06 Aligned_cols=217 Identities=20% Similarity=0.247 Sum_probs=139.5
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEE
Q 001707 727 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEA----------GANFISI 796 (1023)
Q Consensus 727 vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~el----------g~~fi~v 796 (1023)
.+|+++.|.+..++.++..+.. ..+.+|||+||||||||++|+++++++ +.+|+.+
T Consensus 62 ~~f~~iiGqs~~i~~l~~al~~--------------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~i 127 (531)
T TIGR02902 62 KSFDEIIGQEEGIKALKAALCG--------------PNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEI 127 (531)
T ss_pred CCHHHeeCcHHHHHHHHHHHhC--------------CCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEE
Confidence 5799999999999988865421 123579999999999999999998753 3689999
Q ss_pred eccccc-------hhhhhhHHHHH---HHHHH----------HHhhcCCeEEEeccchhhhhccCCCchhHHHHHHHHHH
Q 001707 797 TGSTLT-------SKWFGDAEKLT---KALFS----------FASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEF 856 (1023)
Q Consensus 797 s~seL~-------s~~~ge~e~~I---~~lF~----------~A~k~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~L 856 (1023)
+|.... ....+.....+ ...|. ...+....+||||||+.|.. ...+.++..+
T Consensus 128 d~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI~~L~~--------~~q~~LL~~L 199 (531)
T TIGR02902 128 DATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEIGELHP--------VQMNKLLKVL 199 (531)
T ss_pred ccccccCCccccchhhcCCcccchhccccccccCCcccccCchhhccCCcEEEEechhhCCH--------HHHHHHHHHH
Confidence 986421 11111100000 00011 11123458999999999842 2222222211
Q ss_pred Hh---hhc-----Ccc-------------CCCCceEEEEEecCCCCCCcHHHHhhcCCceeecCCCHHHHHHHHHHHHhc
Q 001707 857 MS---AWD-----GLR-------------SKESQKILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAH 915 (1023)
Q Consensus 857 L~---~Ld-----gl~-------------~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~V~lPd~eeR~~ILk~~L~~ 915 (1023)
-. .+. +.. ..+.+-.+|++||+.|+.+++++++|| ..+.+++++.+++.+|++..+++
T Consensus 200 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrsR~-~~I~f~pL~~eei~~Il~~~a~k 278 (531)
T TIGR02902 200 EDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRSRC-VEIFFRPLLDEEIKEIAKNAAEK 278 (531)
T ss_pred HhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhhhh-heeeCCCCCHHHHHHHHHHHHHH
Confidence 10 010 000 001123455667788999999999998 47889888999999999999887
Q ss_pred cccC-CccCHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCcCCCCHHHHHHHHH
Q 001707 916 ESLE-SGFQFNELANATEGYSGSDLKNLCIAAAYRPVQELLEEERKLFIQRGKNDAAPVLRPLKLEDFIQSKA 987 (1023)
Q Consensus 916 ~~l~-~dvdl~~LA~~TeGySgaDL~~L~~~Aa~~Airr~l~~e~~~~~~~~~~~~~~~~r~Lt~eDF~~Al~ 987 (1023)
..+. ++..++.|+..+ .+++++.++++.|+..|..+ . ...|+.+|+..++.
T Consensus 279 ~~i~is~~al~~I~~y~--~n~Rel~nll~~Aa~~A~~~----~---------------~~~It~~dI~~vl~ 330 (531)
T TIGR02902 279 IGINLEKHALELIVKYA--SNGREAVNIVQLAAGIALGE----G---------------RKRILAEDIEWVAE 330 (531)
T ss_pred cCCCcCHHHHHHHHHhh--hhHHHHHHHHHHHHHHHhhC----C---------------CcEEcHHHHHHHhC
Confidence 6643 233355566544 37899999999988766532 0 13589999999886
No 112
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.46 E-value=8e-13 Score=166.10 Aligned_cols=183 Identities=23% Similarity=0.372 Sum_probs=134.5
Q ss_pred ccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEEe
Q 001707 728 RFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEA----------GANFISIT 797 (1023)
Q Consensus 728 tfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~el----------g~~fi~vs 797 (1023)
.++.++|.+.....+.+.+.. +...+++|+||||||||++++++|..+ +.+++.++
T Consensus 171 ~~~~~igr~~ei~~~~~~l~r--------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~ 236 (852)
T TIGR03346 171 KLDPVIGRDEEIRRTIQVLSR--------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALD 236 (852)
T ss_pred CCCcCCCcHHHHHHHHHHHhc--------------CCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEee
Confidence 577899999877777665421 123468999999999999999999986 67888888
Q ss_pred ccccc--hhhhhhHHHHHHHHHHHHhhc-CCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhcCccCCCCceEEEE
Q 001707 798 GSTLT--SKWFGDAEKLTKALFSFASKL-APVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILIL 874 (1023)
Q Consensus 798 ~seL~--s~~~ge~e~~I~~lF~~A~k~-~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~~~~~VlVI 874 (1023)
+..+. ..|.|+.+..++.+|..+... .++|||||||+.|.+......... ..+.|.-.+ ....+.+|
T Consensus 237 ~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d----~~~~Lk~~l------~~g~i~~I 306 (852)
T TIGR03346 237 MGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMD----AGNMLKPAL------ARGELHCI 306 (852)
T ss_pred HHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhH----HHHHhchhh------hcCceEEE
Confidence 88775 457888999999999988664 589999999999986432221111 122222222 23468899
Q ss_pred EecCCC-----CCCcHHHHhhcCCceeecCCCHHHHHHHHHHHHhccccC-----CccCHHHHHHHccCCc
Q 001707 875 GATNRP-----FDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLE-----SGFQFNELANATEGYS 935 (1023)
Q Consensus 875 aTTN~p-----~~Ld~aLlrRFd~~I~V~lPd~eeR~~ILk~~L~~~~l~-----~dvdl~~LA~~TeGyS 935 (1023)
|+|+.. ..+|+++.|||. .|.++.|+.+++..||+.+....... .+..+..++..+.+|-
T Consensus 307 gaTt~~e~r~~~~~d~al~rRf~-~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~yi 376 (852)
T TIGR03346 307 GATTLDEYRKYIEKDAALERRFQ-PVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRYI 376 (852)
T ss_pred EeCcHHHHHHHhhcCHHHHhcCC-EEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhccccc
Confidence 999866 358999999995 68999999999999999886654432 3334666677777664
No 113
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.45 E-value=4.5e-12 Score=145.58 Aligned_cols=223 Identities=19% Similarity=0.245 Sum_probs=143.0
Q ss_pred cccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEeccccch
Q 001707 729 FDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEA-----GANFISITGSTLTS 803 (1023)
Q Consensus 729 fdDIgGle~vk~~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~el-----g~~fi~vs~seL~s 803 (1023)
.+.+.|.++..+.|...+...+. + ..+.+++|+||||||||++++.+++++ ++.++.+++....+
T Consensus 29 P~~l~~Re~e~~~l~~~l~~~~~-------~---~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~ 98 (394)
T PRK00411 29 PENLPHREEQIEELAFALRPALR-------G---SRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRT 98 (394)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhC-------C---CCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCC
Confidence 35678889988888887743221 1 123569999999999999999999887 57889998865422
Q ss_pred h----------hhh--------hHHHHHHHHHHHHhh-cCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhcCcc
Q 001707 804 K----------WFG--------DAEKLTKALFSFASK-LAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLR 864 (1023)
Q Consensus 804 ~----------~~g--------e~e~~I~~lF~~A~k-~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~ 864 (1023)
. ..+ .....+..+...... ..+.||+|||+|.+.... + ...+..|+..++..
T Consensus 99 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~-~-------~~~l~~l~~~~~~~- 169 (394)
T PRK00411 99 RYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKE-G-------NDVLYSLLRAHEEY- 169 (394)
T ss_pred HHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccC-C-------chHHHHHHHhhhcc-
Confidence 1 111 122333333333332 356899999999996211 1 12345555555443
Q ss_pred CCCCceEEEEEecCCCC---CCcHHHHhhcC-CceeecCCCHHHHHHHHHHHHhcc---ccCCccCHHHHHHHccCCc--
Q 001707 865 SKESQKILILGATNRPF---DLDDAVIRRLP-RRIYVDLPDAENRMKILRIFLAHE---SLESGFQFNELANATEGYS-- 935 (1023)
Q Consensus 865 ~~~~~~VlVIaTTN~p~---~Ld~aLlrRFd-~~I~V~lPd~eeR~~ILk~~L~~~---~l~~dvdl~~LA~~TeGyS-- 935 (1023)
.+.++.+|+++|... .+++.+.+||. ..|.+++++.++..+|++..+... ...++..++.+++.+.+.+
T Consensus 170 --~~~~v~vI~i~~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd 247 (394)
T PRK00411 170 --PGARIGVIGISSDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGD 247 (394)
T ss_pred --CCCeEEEEEEECCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCc
Confidence 233688888888664 47788888774 568899999999999999887532 1223444677777775422
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCcCCCCHHHHHHHHHhhCC
Q 001707 936 GSDLKNLCIAAAYRPVQELLEEERKLFIQRGKNDAAPVLRPLKLEDFIQSKAKVGP 991 (1023)
Q Consensus 936 gaDL~~L~~~Aa~~Airr~l~~e~~~~~~~~~~~~~~~~r~Lt~eDF~~Al~kv~P 991 (1023)
.+.+..+|..|+..|..+. ...|+.+|+..|+.++.+
T Consensus 248 ~r~a~~ll~~a~~~a~~~~-------------------~~~I~~~~v~~a~~~~~~ 284 (394)
T PRK00411 248 ARVAIDLLRRAGLIAEREG-------------------SRKVTEEDVRKAYEKSEI 284 (394)
T ss_pred HHHHHHHHHHHHHHHHHcC-------------------CCCcCHHHHHHHHHHHHH
Confidence 3445566766665554321 125777777777776643
No 114
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.45 E-value=1.5e-12 Score=154.75 Aligned_cols=186 Identities=19% Similarity=0.191 Sum_probs=133.3
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc--------------
Q 001707 727 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGAN-------------- 792 (1023)
Q Consensus 727 vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~elg~~-------------- 792 (1023)
.+|+||+|.+.+++.|..++.. .+.++.+||+||||+|||++|+++|+.+++.
T Consensus 13 ~~f~divGq~~v~~~L~~~~~~-------------~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C 79 (509)
T PRK14958 13 RCFQEVIGQAPVVRALSNALDQ-------------QYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENC 79 (509)
T ss_pred CCHHHhcCCHHHHHHHHHHHHh-------------CCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHH
Confidence 5799999999999999998843 1234578999999999999999999998642
Q ss_pred ----------EEEEeccccchhhhhhHHHHHHHHHHHHh----hcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHh
Q 001707 793 ----------FISITGSTLTSKWFGDAEKLTKALFSFAS----KLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMS 858 (1023)
Q Consensus 793 ----------fi~vs~seL~s~~~ge~e~~I~~lF~~A~----k~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~ 858 (1023)
++.++.+.- ..-..++.+...+. .....|+||||+|.|.. ...+.|+.
T Consensus 80 ~~i~~g~~~d~~eidaas~------~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~------------~a~naLLk 141 (509)
T PRK14958 80 REIDEGRFPDLFEVDAASR------TKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSG------------HSFNALLK 141 (509)
T ss_pred HHHhcCCCceEEEEccccc------CCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCH------------HHHHHHHH
Confidence 445544321 11122344433332 12346999999999842 22456777
Q ss_pred hhcCccCCCCceEEEEEecCCCCCCcHHHHhhcCCceeecCCCHHHHHHHHHHHHhccccC-CccCHHHHHHHccCCcHH
Q 001707 859 AWDGLRSKESQKILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLE-SGFQFNELANATEGYSGS 937 (1023)
Q Consensus 859 ~Ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~V~lPd~eeR~~ILk~~L~~~~l~-~dvdl~~LA~~TeGySga 937 (1023)
.|+.. ...+.+|.+|+.+..+.+.+++|+ ..+.+..++.++....++..+..+++. .+..+..|+..+.| +.+
T Consensus 142 ~LEep----p~~~~fIlattd~~kl~~tI~SRc-~~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~ia~~s~G-slR 215 (509)
T PRK14958 142 TLEEP----PSHVKFILATTDHHKLPVTVLSRC-LQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARAANG-SVR 215 (509)
T ss_pred HHhcc----CCCeEEEEEECChHhchHHHHHHh-hhhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-cHH
Confidence 66653 235667777788888888999998 678899999999899998888877654 33446778887776 788
Q ss_pred HHHHHHHHHHHH
Q 001707 938 DLKNLCIAAAYR 949 (1023)
Q Consensus 938 DL~~L~~~Aa~~ 949 (1023)
++.+++..++..
T Consensus 216 ~al~lLdq~ia~ 227 (509)
T PRK14958 216 DALSLLDQSIAY 227 (509)
T ss_pred HHHHHHHHHHhc
Confidence 888888766543
No 115
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.45 E-value=2e-12 Score=149.29 Aligned_cols=185 Identities=18% Similarity=0.225 Sum_probs=124.7
Q ss_pred ccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc---------------
Q 001707 728 RFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGAN--------------- 792 (1023)
Q Consensus 728 tfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~elg~~--------------- 792 (1023)
.|++|+|++.+++.|+..+......+.. .+ ...++.+||+||||+|||++|+++|+.+.+.
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~~~~~---~~-~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~ 78 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARADVAA---AG-SGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRT 78 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhccccccc---cC-CCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHH
Confidence 5899999999999999999764332221 12 2346789999999999999999999987443
Q ss_pred --------EEEEeccccchhhhhhHHHHHHHHHHHHhhc----CCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhh
Q 001707 793 --------FISITGSTLTSKWFGDAEKLTKALFSFASKL----APVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAW 860 (1023)
Q Consensus 793 --------fi~vs~seL~s~~~ge~e~~I~~lF~~A~k~----~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~L 860 (1023)
+..+.+.. .. -.-..++.++..+... ...|+||||+|.|... ..+.|+..|
T Consensus 79 ~~~~~hpD~~~i~~~~-~~----i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~------------aanaLLk~L 141 (394)
T PRK07940 79 VLAGTHPDVRVVAPEG-LS----IGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTER------------AANALLKAV 141 (394)
T ss_pred HhcCCCCCEEEecccc-cc----CCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHH------------HHHHHHHHh
Confidence 11222111 00 1123366777766542 3469999999998421 235677766
Q ss_pred cCccCCCCceEEEEEecCCCCCCcHHHHhhcCCceeecCCCHHHHHHHHHHHHhccccCCccCHHHHHHHccCCcHHHHH
Q 001707 861 DGLRSKESQKILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLESGFQFNELANATEGYSGSDLK 940 (1023)
Q Consensus 861 dgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~V~lPd~eeR~~ILk~~L~~~~l~~dvdl~~LA~~TeGySgaDL~ 940 (1023)
+.. +...++|+ +|+.++.+.+.+++|+ ..+.|++|+.++..++|.... ++ +......++..+.|..+..+.
T Consensus 142 Eep---~~~~~fIL-~a~~~~~llpTIrSRc-~~i~f~~~~~~~i~~~L~~~~---~~-~~~~a~~la~~s~G~~~~A~~ 212 (394)
T PRK07940 142 EEP---PPRTVWLL-CAPSPEDVLPTIRSRC-RHVALRTPSVEAVAEVLVRRD---GV-DPETARRAARASQGHIGRARR 212 (394)
T ss_pred hcC---CCCCeEEE-EECChHHChHHHHhhC-eEEECCCCCHHHHHHHHHHhc---CC-CHHHHHHHHHHcCCCHHHHHH
Confidence 543 22344444 5555899999999999 689999999999888776321 22 233466788899998776655
Q ss_pred HH
Q 001707 941 NL 942 (1023)
Q Consensus 941 ~L 942 (1023)
-+
T Consensus 213 l~ 214 (394)
T PRK07940 213 LA 214 (394)
T ss_pred Hh
Confidence 44
No 116
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.44 E-value=4.8e-12 Score=151.58 Aligned_cols=166 Identities=23% Similarity=0.362 Sum_probs=112.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEeccccchhhhhhHHHHHHHHHHHHhhcCCeEEEeccchhhhhccC
Q 001707 767 GILLFGPPGTGKTLLAKALATEA-----GANFISITGSTLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARG 841 (1023)
Q Consensus 767 gVLL~GPPGTGKT~LArAIA~el-----g~~fi~vs~seL~s~~~ge~e~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~ 841 (1023)
.++|||++|+|||+|++||++++ +..++++++.+++..+...........|...++ .+.+|+||||+.+.++..
T Consensus 316 pL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~~~~~~f~~~y~-~~DLLlIDDIq~l~gke~ 394 (617)
T PRK14086 316 PLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRRRYR-EMDILLVDDIQFLEDKES 394 (617)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHhccHHHHHHHhh-cCCEEEEehhccccCCHH
Confidence 49999999999999999999987 578899999888776655433322333543333 468999999999864321
Q ss_pred CCchhHHHHHHHHHHHhhhcCccCCCCceEEEEEecCC-CC---CCcHHHHhhcCC--ceeecCCCHHHHHHHHHHHHhc
Q 001707 842 GAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNR-PF---DLDDAVIRRLPR--RIYVDLPDAENRMKILRIFLAH 915 (1023)
Q Consensus 842 ~~~~~e~~~ril~~LL~~Ldgl~~~~~~~VlVIaTTN~-p~---~Ld~aLlrRFd~--~I~V~lPd~eeR~~ILk~~L~~ 915 (1023)
..+ +|+..++.+.. ..+.+|| |++. |. .+++.|.+||.. .+.+..|+.+.|..||+..+..
T Consensus 395 ---tqe-------eLF~l~N~l~e--~gk~III-TSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka~~ 461 (617)
T PRK14086 395 ---TQE-------EFFHTFNTLHN--ANKQIVL-SSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAVQ 461 (617)
T ss_pred ---HHH-------HHHHHHHHHHh--cCCCEEE-ecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHHHh
Confidence 111 22222222221 1233444 5544 33 478899999965 4577889999999999999887
Q ss_pred cccC-CccCHHHHHHHccCCcHHHHHHHHHHHH
Q 001707 916 ESLE-SGFQFNELANATEGYSGSDLKNLCIAAA 947 (1023)
Q Consensus 916 ~~l~-~dvdl~~LA~~TeGySgaDL~~L~~~Aa 947 (1023)
..+. ++.-+..|+....+ +.++|..++....
T Consensus 462 r~l~l~~eVi~yLa~r~~r-nvR~LegaL~rL~ 493 (617)
T PRK14086 462 EQLNAPPEVLEFIASRISR-NIRELEGALIRVT 493 (617)
T ss_pred cCCCCCHHHHHHHHHhccC-CHHHHHHHHHHHH
Confidence 7654 33446777777764 6677777665543
No 117
>PRK04195 replication factor C large subunit; Provisional
Probab=99.44 E-value=1.4e-12 Score=154.37 Aligned_cols=185 Identities=25% Similarity=0.361 Sum_probs=129.7
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccchhhh
Q 001707 727 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTSKWF 806 (1023)
Q Consensus 727 vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~elg~~fi~vs~seL~s~~~ 806 (1023)
.+|++++|.+.+++.|..++.... ++ .+++++||+||||||||++|+++|++++++++.+++++....
T Consensus 11 ~~l~dlvg~~~~~~~l~~~l~~~~-------~g---~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~~-- 78 (482)
T PRK04195 11 KTLSDVVGNEKAKEQLREWIESWL-------KG---KPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRTA-- 78 (482)
T ss_pred CCHHHhcCCHHHHHHHHHHHHHHh-------cC---CCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcccccccH--
Confidence 579999999999999999985432 22 246789999999999999999999999999999998765421
Q ss_pred hhHHHHHHHHHHHHhh------cCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhcCccCCCCceEEEEEecCCC
Q 001707 807 GDAEKLTKALFSFASK------LAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRP 880 (1023)
Q Consensus 807 ge~e~~I~~lF~~A~k------~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~~~~~VlVIaTTN~p 880 (1023)
..+..+...+.. ..+.||+|||+|.+..... ....+.|+..++.. +..+|+++|.+
T Consensus 79 ----~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~d--------~~~~~aL~~~l~~~------~~~iIli~n~~ 140 (482)
T PRK04195 79 ----DVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNED--------RGGARAILELIKKA------KQPIILTANDP 140 (482)
T ss_pred ----HHHHHHHHHhhccCcccCCCCeEEEEecCcccccccc--------hhHHHHHHHHHHcC------CCCEEEeccCc
Confidence 122222222211 2568999999999854211 11233444444321 23466678888
Q ss_pred CCCcH-HHHhhcCCceeecCCCHHHHHHHHHHHHhccccC-CccCHHHHHHHccCCcHHHHHHHHHHH
Q 001707 881 FDLDD-AVIRRLPRRIYVDLPDAENRMKILRIFLAHESLE-SGFQFNELANATEGYSGSDLKNLCIAA 946 (1023)
Q Consensus 881 ~~Ld~-aLlrRFd~~I~V~lPd~eeR~~ILk~~L~~~~l~-~dvdl~~LA~~TeGySgaDL~~L~~~A 946 (1023)
..+.. .+++|+ ..|.|+.|+..++..+++.++...++. ++..+..|+..+.| ||+.+++..
T Consensus 141 ~~~~~k~Lrsr~-~~I~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s~G----DlR~ain~L 203 (482)
T PRK04195 141 YDPSLRELRNAC-LMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSGG----DLRSAINDL 203 (482)
T ss_pred cccchhhHhccc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC----CHHHHHHHH
Confidence 88887 566565 679999999999999999998876653 34457777777665 555554433
No 118
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.43 E-value=3.2e-12 Score=141.70 Aligned_cols=208 Identities=22% Similarity=0.349 Sum_probs=135.2
Q ss_pred cccccccChHHHHH---HHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc---EEEEeccc
Q 001707 727 VRFDDIGALEDVKK---ALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGAN---FISITGST 800 (1023)
Q Consensus 727 vtfdDIgGle~vk~---~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~elg~~---fi~vs~se 800 (1023)
.+++|.+|++.+.. .|+.+|++ ....+++||||||||||+||+.|+.-..-+ |+.++...
T Consensus 135 ktL~dyvGQ~hlv~q~gllrs~ieq--------------~~ipSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~ 200 (554)
T KOG2028|consen 135 KTLDDYVGQSHLVGQDGLLRSLIEQ--------------NRIPSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATN 200 (554)
T ss_pred chHHHhcchhhhcCcchHHHHHHHc--------------CCCCceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccc
Confidence 35677777766543 33444422 123579999999999999999999988655 77776543
Q ss_pred cchhhhhhHHHHHHHHHHHHhhc-----CCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhcCccCCCCceEEEEE
Q 001707 801 LTSKWFGDAEKLTKALFSFASKL-----APVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILG 875 (1023)
Q Consensus 801 L~s~~~ge~e~~I~~lF~~A~k~-----~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~~~~~VlVIa 875 (1023)
- ..+-++.+|+.+++. ...|||||||+++....+ ..||-. .+...|++||
T Consensus 201 a-------~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFNksQQ------------D~fLP~------VE~G~I~lIG 255 (554)
T KOG2028|consen 201 A-------KTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNKSQQ------------DTFLPH------VENGDITLIG 255 (554)
T ss_pred c-------chHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhhhhhh------------hcccce------eccCceEEEe
Confidence 2 345677788877643 358999999999853332 233332 2456788888
Q ss_pred ec--CCCCCCcHHHHhhcCCceeecCCCHHHHHHHHHHHHhcc--------ccC------CccCHHHHHHHccCCcHHHH
Q 001707 876 AT--NRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHE--------SLE------SGFQFNELANATEGYSGSDL 939 (1023)
Q Consensus 876 TT--N~p~~Ld~aLlrRFd~~I~V~lPd~eeR~~ILk~~L~~~--------~l~------~dvdl~~LA~~TeGySgaDL 939 (1023)
+| |+.+.|..+|++|+ +++.+.....+....||...+... ++. .+--++.|+..++|-....|
T Consensus 256 ATTENPSFqln~aLlSRC-~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR~aL 334 (554)
T KOG2028|consen 256 ATTENPSFQLNAALLSRC-RVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDARAAL 334 (554)
T ss_pred cccCCCccchhHHHHhcc-ceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHHHHH
Confidence 77 66677999999999 577788888899999988754411 111 12236778888888555544
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCcCCCCHHHHHHHHHhhC
Q 001707 940 KNLCIAAAYRPVQELLEEERKLFIQRGKNDAAPVLRPLKLEDFIQSKAKVG 990 (1023)
Q Consensus 940 ~~L~~~Aa~~Airr~l~~e~~~~~~~~~~~~~~~~r~Lt~eDF~~Al~kv~ 990 (1023)
..|--.+.+...|. ......+|+.+|+.++++.-.
T Consensus 335 N~Lems~~m~~tr~----------------g~~~~~~lSidDvke~lq~s~ 369 (554)
T KOG2028|consen 335 NALEMSLSMFCTRS----------------GQSSRVLLSIDDVKEGLQRSH 369 (554)
T ss_pred HHHHHHHHHHHhhc----------------CCcccceecHHHHHHHHhhcc
Confidence 44322111111111 112335789999998887544
No 119
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.43 E-value=3.5e-12 Score=151.21 Aligned_cols=186 Identities=23% Similarity=0.249 Sum_probs=135.2
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc--------------
Q 001707 727 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGAN-------------- 792 (1023)
Q Consensus 727 vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~elg~~-------------- 792 (1023)
.+|+|++|++.+...|...+.. -+.++++||+||||||||++|+++|+.+++.
T Consensus 18 ~~f~dliGq~~vv~~L~~ai~~-------------~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~ 84 (507)
T PRK06645 18 SNFAELQGQEVLVKVLSYTILN-------------DRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQ 84 (507)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc-------------CCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCC
Confidence 5799999999999999887632 1335689999999999999999999998642
Q ss_pred --------------EEEEeccccchhhhhhHHHHHHHHHHHHhhc----CCeEEEeccchhhhhccCCCchhHHHHHHHH
Q 001707 793 --------------FISITGSTLTSKWFGDAEKLTKALFSFASKL----APVIIFVDEVDSLLGARGGAFEHEATRRMRN 854 (1023)
Q Consensus 793 --------------fi~vs~seL~s~~~ge~e~~I~~lF~~A~k~----~PsIIfIDEID~L~~~r~~~~~~e~~~ril~ 854 (1023)
++.++... ......++.+...+... ...|+||||+|.+.. ...+
T Consensus 85 C~~C~~i~~~~h~Dv~eidaas------~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~------------~a~n 146 (507)
T PRK06645 85 CTNCISFNNHNHPDIIEIDAAS------KTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSK------------GAFN 146 (507)
T ss_pred ChHHHHHhcCCCCcEEEeeccC------CCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCH------------HHHH
Confidence 22222211 11234455666655432 346999999998831 2345
Q ss_pred HHHhhhcCccCCCCceEEEEEecCCCCCCcHHHHhhcCCceeecCCCHHHHHHHHHHHHhccccC-CccCHHHHHHHccC
Q 001707 855 EFMSAWDGLRSKESQKILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLE-SGFQFNELANATEG 933 (1023)
Q Consensus 855 ~LL~~Ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~V~lPd~eeR~~ILk~~L~~~~l~-~dvdl~~LA~~TeG 933 (1023)
.|+..++.. +..+++|.+|+.+..+.+.+.+|+ ..+.+..++.++...+++..+..+++. ++..+..|+..+.|
T Consensus 147 aLLk~LEep----p~~~vfI~aTte~~kI~~tI~SRc-~~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia~~s~G 221 (507)
T PRK06645 147 ALLKTLEEP----PPHIIFIFATTEVQKIPATIISRC-QRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYKSEG 221 (507)
T ss_pred HHHHHHhhc----CCCEEEEEEeCChHHhhHHHHhcc-eEEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 666666542 345677777788888999999999 578899999999999999999877754 33447778888876
Q ss_pred CcHHHHHHHHHHHHHH
Q 001707 934 YSGSDLKNLCIAAAYR 949 (1023)
Q Consensus 934 ySgaDL~~L~~~Aa~~ 949 (1023)
+.+++.++++.++..
T Consensus 222 -slR~al~~Ldkai~~ 236 (507)
T PRK06645 222 -SARDAVSILDQAASM 236 (507)
T ss_pred -CHHHHHHHHHHHHHh
Confidence 888888888777544
No 120
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.42 E-value=3.6e-12 Score=154.00 Aligned_cols=186 Identities=22% Similarity=0.223 Sum_probs=135.3
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc--------------
Q 001707 727 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGAN-------------- 792 (1023)
Q Consensus 727 vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~elg~~-------------- 792 (1023)
.+|+||+|.+.+++.|+.++.. -+.++.+||+||+|+|||++|+++|+.+++.
T Consensus 13 ~tFddIIGQe~vv~~L~~ai~~-------------~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sC 79 (709)
T PRK08691 13 KTFADLVGQEHVVKALQNALDE-------------GRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSC 79 (709)
T ss_pred CCHHHHcCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHH
Confidence 5799999999999999998743 1345689999999999999999999987542
Q ss_pred ----------EEEEeccccchhhhhhHHHHHHHHHHHHhh----cCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHh
Q 001707 793 ----------FISITGSTLTSKWFGDAEKLTKALFSFASK----LAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMS 858 (1023)
Q Consensus 793 ----------fi~vs~seL~s~~~ge~e~~I~~lF~~A~k----~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~ 858 (1023)
++.++... ......++.++..+.. ....||||||+|.|. ....+.|+.
T Consensus 80 r~i~~g~~~DvlEidaAs------~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls------------~~A~NALLK 141 (709)
T PRK08691 80 TQIDAGRYVDLLEIDAAS------NTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLS------------KSAFNAMLK 141 (709)
T ss_pred HHHhccCccceEEEeccc------cCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccC------------HHHHHHHHH
Confidence 22222211 1112345555554322 234799999999873 123456777
Q ss_pred hhcCccCCCCceEEEEEecCCCCCCcHHHHhhcCCceeecCCCHHHHHHHHHHHHhccccC-CccCHHHHHHHccCCcHH
Q 001707 859 AWDGLRSKESQKILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLE-SGFQFNELANATEGYSGS 937 (1023)
Q Consensus 859 ~Ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~V~lPd~eeR~~ILk~~L~~~~l~-~dvdl~~LA~~TeGySga 937 (1023)
.|+.. ...+.+|.+|+.+..+...+++|| ..+.|..++.++...+|+.++..+++. .+..+..|++.+.| +.+
T Consensus 142 tLEEP----p~~v~fILaTtd~~kL~~TIrSRC-~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A~G-slR 215 (709)
T PRK08691 142 TLEEP----PEHVKFILATTDPHKVPVTVLSRC-LQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAAG-SMR 215 (709)
T ss_pred HHHhC----CCCcEEEEEeCCccccchHHHHHH-hhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCC-CHH
Confidence 66643 245677778888999999999999 678888999999999999999887754 33447788888875 888
Q ss_pred HHHHHHHHHHHH
Q 001707 938 DLKNLCIAAAYR 949 (1023)
Q Consensus 938 DL~~L~~~Aa~~ 949 (1023)
++.+++..++..
T Consensus 216 dAlnLLDqaia~ 227 (709)
T PRK08691 216 DALSLLDQAIAL 227 (709)
T ss_pred HHHHHHHHHHHh
Confidence 888888776653
No 121
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.42 E-value=3.8e-12 Score=150.08 Aligned_cols=186 Identities=19% Similarity=0.213 Sum_probs=136.3
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC----------------
Q 001707 727 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAG---------------- 790 (1023)
Q Consensus 727 vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~elg---------------- 790 (1023)
.+|+|++|++.+++.|...+.. + +.++++||+||+|+|||++|+.+|+.+.
T Consensus 10 ~~f~dliGQe~vv~~L~~a~~~----------~---ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C 76 (491)
T PRK14964 10 SSFKDLVGQDVLVRILRNAFTL----------N---KIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNC 76 (491)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc----------C---CCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHH
Confidence 5799999999999999887632 1 3457899999999999999999998763
Q ss_pred --------CcEEEEeccccchhhhhhHHHHHHHHHHHHhh----cCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHh
Q 001707 791 --------ANFISITGSTLTSKWFGDAEKLTKALFSFASK----LAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMS 858 (1023)
Q Consensus 791 --------~~fi~vs~seL~s~~~ge~e~~I~~lF~~A~k----~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~ 858 (1023)
..++.+++++-. .-..++.+...+.. ...-|++|||+|.|.. ...+.|+.
T Consensus 77 ~~i~~~~~~Dv~eidaas~~------~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~------------~A~NaLLK 138 (491)
T PRK14964 77 ISIKNSNHPDVIEIDAASNT------SVDDIKVILENSCYLPISSKFKVYIIDEVHMLSN------------SAFNALLK 138 (491)
T ss_pred HHHhccCCCCEEEEecccCC------CHHHHHHHHHHHHhccccCCceEEEEeChHhCCH------------HHHHHHHH
Confidence 234556554321 12334445444432 2346999999998832 23566777
Q ss_pred hhcCccCCCCceEEEEEecCCCCCCcHHHHhhcCCceeecCCCHHHHHHHHHHHHhccccC-CccCHHHHHHHccCCcHH
Q 001707 859 AWDGLRSKESQKILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLE-SGFQFNELANATEGYSGS 937 (1023)
Q Consensus 859 ~Ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~V~lPd~eeR~~ILk~~L~~~~l~-~dvdl~~LA~~TeGySga 937 (1023)
.|+.. ...+.+|.+|+.+..+.+.+++|+ ..+.+..++.++...+++..+..+++. ++..+..|++.+.| +.+
T Consensus 139 ~LEeP----p~~v~fIlatte~~Kl~~tI~SRc-~~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~s~G-slR 212 (491)
T PRK14964 139 TLEEP----APHVKFILATTEVKKIPVTIISRC-QRFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENSSG-SMR 212 (491)
T ss_pred HHhCC----CCCeEEEEEeCChHHHHHHHHHhh-eeeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 77653 335777777788888999999999 578999999999999999998877654 44457778888876 888
Q ss_pred HHHHHHHHHHHH
Q 001707 938 DLKNLCIAAAYR 949 (1023)
Q Consensus 938 DL~~L~~~Aa~~ 949 (1023)
++.+++..++..
T Consensus 213 ~alslLdqli~y 224 (491)
T PRK14964 213 NALFLLEQAAIY 224 (491)
T ss_pred HHHHHHHHHHHh
Confidence 888888776643
No 122
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.42 E-value=5.5e-12 Score=135.83 Aligned_cols=189 Identities=25% Similarity=0.369 Sum_probs=136.8
Q ss_pred CcccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccc
Q 001707 726 GVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEA---GANFISITGSTLT 802 (1023)
Q Consensus 726 ~vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~el---g~~fi~vs~seL~ 802 (1023)
.+.++++.|++.+++.|.+-... |..+ .|..+|||||++|||||++++|+..+. |..+|.+.-..+.
T Consensus 23 ~~~l~~L~Gie~Qk~~l~~Nt~~-------Fl~G---~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L~ 92 (249)
T PF05673_consen 23 PIRLDDLIGIERQKEALIENTEQ-------FLQG---LPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDLG 92 (249)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHH-------HHcC---CCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHhc
Confidence 47899999999999999876644 4443 367899999999999999999999877 7788888765543
Q ss_pred hhhhhhHHHHHHHHHHHHh-hcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhcCccCCCCceEEEEEecCCCC
Q 001707 803 SKWFGDAEKLTKALFSFAS-KLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPF 881 (1023)
Q Consensus 803 s~~~ge~e~~I~~lF~~A~-k~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~~~~~VlVIaTTN~p~ 881 (1023)
. +..++...+ +...-|||+||+- +... ..-...|...|+|-....+.+|+|.||+|+.+
T Consensus 93 ~---------l~~l~~~l~~~~~kFIlf~DDLs--Fe~~---------d~~yk~LKs~LeGgle~~P~NvliyATSNRRH 152 (249)
T PF05673_consen 93 D---------LPELLDLLRDRPYKFILFCDDLS--FEEG---------DTEYKALKSVLEGGLEARPDNVLIYATSNRRH 152 (249)
T ss_pred c---------HHHHHHHHhcCCCCEEEEecCCC--CCCC---------cHHHHHHHHHhcCccccCCCcEEEEEecchhh
Confidence 2 334444433 3346899999863 1111 12245777788887666778999999999765
Q ss_pred CCcH-----------------------HHHhhcCCceeecCCCHHHHHHHHHHHHhccccCCc-cCH----HHHHHHccC
Q 001707 882 DLDD-----------------------AVIRRLPRRIYVDLPDAENRMKILRIFLAHESLESG-FQF----NELANATEG 933 (1023)
Q Consensus 882 ~Ld~-----------------------aLlrRFd~~I~V~lPd~eeR~~ILk~~L~~~~l~~d-vdl----~~LA~~TeG 933 (1023)
.+++ +|-.||...|.|.+|+.++-.+|++.++...++.-+ ..+ ...|..-.|
T Consensus 153 Lv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~~~e~l~~~Al~wa~~rg~ 232 (249)
T PF05673_consen 153 LVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLELDEEELRQEALQWALRRGG 232 (249)
T ss_pred ccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHcCC
Confidence 4332 444599999999999999999999999987776433 122 233444557
Q ss_pred CcHHHHHHHHH
Q 001707 934 YSGSDLKNLCI 944 (1023)
Q Consensus 934 ySgaDL~~L~~ 944 (1023)
.||+--++.|.
T Consensus 233 RSGRtA~QF~~ 243 (249)
T PF05673_consen 233 RSGRTARQFID 243 (249)
T ss_pred CCHHHHHHHHH
Confidence 78876666654
No 123
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=1.9e-12 Score=153.00 Aligned_cols=166 Identities=25% Similarity=0.362 Sum_probs=123.5
Q ss_pred ccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccc-------
Q 001707 730 DDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLT------- 802 (1023)
Q Consensus 730 dDIgGle~vk~~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~elg~~fi~vs~seL~------- 802 (1023)
+|-.|++++|+.+.|++.--..+ + ....+-+.|+||||+|||++|++||+.++..|+.++...+.
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLr------g--s~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkG 482 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLR------G--SVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKG 482 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhc------c--cCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhcc
Confidence 36789999999999988532111 1 22335688999999999999999999999999999876542
Q ss_pred --hhhhhhHHHHHHHHHHHHhhcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhc------------CccCCCC
Q 001707 803 --SKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWD------------GLRSKES 868 (1023)
Q Consensus 803 --s~~~ge~e~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ld------------gl~~~~~ 868 (1023)
-.|+|.....+.+......-..| +++|||||.+...-++. +. .+||..|| .++ -+-
T Consensus 483 HRRTYVGAMPGkiIq~LK~v~t~NP-liLiDEvDKlG~g~qGD--Pa------sALLElLDPEQNanFlDHYLdVp-~DL 552 (906)
T KOG2004|consen 483 HRRTYVGAMPGKIIQCLKKVKTENP-LILIDEVDKLGSGHQGD--PA------SALLELLDPEQNANFLDHYLDVP-VDL 552 (906)
T ss_pred cceeeeccCChHHHHHHHhhCCCCc-eEEeehhhhhCCCCCCC--hH------HHHHHhcChhhccchhhhccccc-cch
Confidence 23777777777777777766555 66799999997433332 11 23333333 111 133
Q ss_pred ceEEEEEecCCCCCCcHHHHhhcCCceeecCCCHHHHHHHHHHHHh
Q 001707 869 QKILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLA 914 (1023)
Q Consensus 869 ~~VlVIaTTN~p~~Ld~aLlrRFd~~I~V~lPd~eeR~~ILk~~L~ 914 (1023)
.+|++|||+|..+.++++|++|+ ..|.++-+..++...|.+.|+-
T Consensus 553 SkVLFicTAN~idtIP~pLlDRM-EvIelsGYv~eEKv~IA~~yLi 597 (906)
T KOG2004|consen 553 SKVLFICTANVIDTIPPPLLDRM-EVIELSGYVAEEKVKIAERYLI 597 (906)
T ss_pred hheEEEEeccccccCChhhhhhh-heeeccCccHHHHHHHHHHhhh
Confidence 58999999999999999999999 5789988999999999998864
No 124
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.40 E-value=8.7e-12 Score=139.69 Aligned_cols=184 Identities=18% Similarity=0.206 Sum_probs=118.9
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC-----CcEEEEecccc
Q 001707 727 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAG-----ANFISITGSTL 801 (1023)
Q Consensus 727 vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~elg-----~~fi~vs~seL 801 (1023)
.+|+++.|.+.+++.|..++.. + ...++||+||||||||++|+++++++. .+++.+++.++
T Consensus 12 ~~~~~~~g~~~~~~~L~~~~~~-----------~---~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~ 77 (337)
T PRK12402 12 ALLEDILGQDEVVERLSRAVDS-----------P---NLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADF 77 (337)
T ss_pred CcHHHhcCCHHHHHHHHHHHhC-----------C---CCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhh
Confidence 4689999999999999887732 1 113699999999999999999999883 35677787665
Q ss_pred chhhh-------------hh-------HHHHHHHHHHHHhh-----cCCeEEEeccchhhhhccCCCchhHHHHHHHHHH
Q 001707 802 TSKWF-------------GD-------AEKLTKALFSFASK-----LAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEF 856 (1023)
Q Consensus 802 ~s~~~-------------ge-------~e~~I~~lF~~A~k-----~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~L 856 (1023)
..... +. ....++.+...... ..+.+|+|||+|.+... ..+.|
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~------------~~~~L 145 (337)
T PRK12402 78 FDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALRED------------AQQAL 145 (337)
T ss_pred hhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHH------------HHHHH
Confidence 32210 00 01222222222222 23469999999987321 12234
Q ss_pred HhhhcCccCCCCceEEEEEecCCCCCCcHHHHhhcCCceeecCCCHHHHHHHHHHHHhccccC-CccCHHHHHHHccCCc
Q 001707 857 MSAWDGLRSKESQKILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLE-SGFQFNELANATEGYS 935 (1023)
Q Consensus 857 L~~Ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~V~lPd~eeR~~ILk~~L~~~~l~-~dvdl~~LA~~TeGyS 935 (1023)
...++... . ...+|.+++.+..+.+.+.+|+ ..+.+.+|+.++...+++..+...++. ++..+..|+..+.| +
T Consensus 146 ~~~le~~~---~-~~~~Il~~~~~~~~~~~L~sr~-~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~~l~~~~~g-d 219 (337)
T PRK12402 146 RRIMEQYS---R-TCRFIIATRQPSKLIPPIRSRC-LPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIAYYAGG-D 219 (337)
T ss_pred HHHHHhcc---C-CCeEEEEeCChhhCchhhcCCc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 44444321 1 2334455656667778888887 578899999999999999988876654 44456777777643 4
Q ss_pred HHHHHHH
Q 001707 936 GSDLKNL 942 (1023)
Q Consensus 936 gaDL~~L 942 (1023)
.+++.+.
T Consensus 220 lr~l~~~ 226 (337)
T PRK12402 220 LRKAILT 226 (337)
T ss_pred HHHHHHH
Confidence 4444333
No 125
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.40 E-value=5.8e-12 Score=152.09 Aligned_cols=186 Identities=21% Similarity=0.227 Sum_probs=132.2
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc--------------
Q 001707 727 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGAN-------------- 792 (1023)
Q Consensus 727 vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~elg~~-------------- 792 (1023)
.+|+||+|.+.+++.|..++.. + +.++.+||+||+|+|||++|+++|+.+.+.
T Consensus 13 ~~f~dviGQe~vv~~L~~~l~~-----------~--rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg 79 (618)
T PRK14951 13 RSFSEMVGQEHVVQALTNALTQ-----------Q--RLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCG 79 (618)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc-----------C--CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCC
Confidence 5799999999999999998743 1 234568999999999999999999998641
Q ss_pred ---------------EEEEeccccchhhhhhHHHHHHHHHHHHhhc----CCeEEEeccchhhhhccCCCchhHHHHHHH
Q 001707 793 ---------------FISITGSTLTSKWFGDAEKLTKALFSFASKL----APVIIFVDEVDSLLGARGGAFEHEATRRMR 853 (1023)
Q Consensus 793 ---------------fi~vs~seL~s~~~ge~e~~I~~lF~~A~k~----~PsIIfIDEID~L~~~r~~~~~~e~~~ril 853 (1023)
++.++...- ..-..++.+...+... .-.|++|||+|.|.. ...
T Consensus 80 ~C~~C~~i~~g~h~D~~eldaas~------~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~------------~a~ 141 (618)
T PRK14951 80 VCQACRDIDSGRFVDYTELDAASN------RGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTN------------TAF 141 (618)
T ss_pred ccHHHHHHHcCCCCceeecCcccc------cCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCH------------HHH
Confidence 233332211 1122344444443322 235999999999842 224
Q ss_pred HHHHhhhcCccCCCCceEEEEEecCCCCCCcHHHHhhcCCceeecCCCHHHHHHHHHHHHhccccC-CccCHHHHHHHcc
Q 001707 854 NEFMSAWDGLRSKESQKILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLE-SGFQFNELANATE 932 (1023)
Q Consensus 854 ~~LL~~Ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~V~lPd~eeR~~ILk~~L~~~~l~-~dvdl~~LA~~Te 932 (1023)
|.|+..++.. ...+.+|.+|+.+..+...+++|+ ..+.|..++.++...+++..+...++. ++..+..|+..+.
T Consensus 142 NaLLKtLEEP----P~~~~fIL~Ttd~~kil~TIlSRc-~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~La~~s~ 216 (618)
T PRK14951 142 NAMLKTLEEP----PEYLKFVLATTDPQKVPVTVLSRC-LQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLARAAR 216 (618)
T ss_pred HHHHHhcccC----CCCeEEEEEECCchhhhHHHHHhc-eeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 5666666542 345667777778888888899998 688999999999999999988877664 3334778888887
Q ss_pred CCcHHHHHHHHHHHHHH
Q 001707 933 GYSGSDLKNLCIAAAYR 949 (1023)
Q Consensus 933 GySgaDL~~L~~~Aa~~ 949 (1023)
| +.+++.+++..+...
T Consensus 217 G-slR~al~lLdq~ia~ 232 (618)
T PRK14951 217 G-SMRDALSLTDQAIAF 232 (618)
T ss_pred C-CHHHHHHHHHHHHHh
Confidence 6 778888887665543
No 126
>PLN03025 replication factor C subunit; Provisional
Probab=99.40 E-value=8.4e-12 Score=140.36 Aligned_cols=183 Identities=19% Similarity=0.179 Sum_probs=121.9
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC-----CcEEEEecccc
Q 001707 727 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAG-----ANFISITGSTL 801 (1023)
Q Consensus 727 vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~elg-----~~fi~vs~seL 801 (1023)
.+|+|+.|.+++.+.|+.++.. + ...++|||||||||||++|+++|+++. ..++.++.++.
T Consensus 10 ~~l~~~~g~~~~~~~L~~~~~~-----------~---~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd~ 75 (319)
T PLN03025 10 TKLDDIVGNEDAVSRLQVIARD-----------G---NMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASDD 75 (319)
T ss_pred CCHHHhcCcHHHHHHHHHHHhc-----------C---CCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeeccccc
Confidence 5799999999999999887632 1 123699999999999999999999972 24566666543
Q ss_pred chhhhhhHHHHHHHHHHHHh----hcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhcCccCCCCceEEEEEec
Q 001707 802 TSKWFGDAEKLTKALFSFAS----KLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGAT 877 (1023)
Q Consensus 802 ~s~~~ge~e~~I~~lF~~A~----k~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~~~~~VlVIaTT 877 (1023)
.+. ......++ .|.... .....||+|||+|.+.... .+.|+..++.. .....+|.+|
T Consensus 76 ~~~--~~vr~~i~-~~~~~~~~~~~~~~kviiiDE~d~lt~~a------------q~aL~~~lE~~----~~~t~~il~~ 136 (319)
T PLN03025 76 RGI--DVVRNKIK-MFAQKKVTLPPGRHKIVILDEADSMTSGA------------QQALRRTMEIY----SNTTRFALAC 136 (319)
T ss_pred ccH--HHHHHHHH-HHHhccccCCCCCeEEEEEechhhcCHHH------------HHHHHHHHhcc----cCCceEEEEe
Confidence 221 11111121 121111 1235799999999984221 23344444322 1234466678
Q ss_pred CCCCCCcHHHHhhcCCceeecCCCHHHHHHHHHHHHhccccC-CccCHHHHHHHccCCcHHHHHHHHH
Q 001707 878 NRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLE-SGFQFNELANATEGYSGSDLKNLCI 944 (1023)
Q Consensus 878 N~p~~Ld~aLlrRFd~~I~V~lPd~eeR~~ILk~~L~~~~l~-~dvdl~~LA~~TeGySgaDL~~L~~ 944 (1023)
|.+..+.+++++|+ ..+.|+.|+.++...+++..+..+++. ++..+..|+..+.| ..+.+.+.++
T Consensus 137 n~~~~i~~~L~SRc-~~i~f~~l~~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~g-DlR~aln~Lq 202 (319)
T PLN03025 137 NTSSKIIEPIQSRC-AIVRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTADG-DMRQALNNLQ 202 (319)
T ss_pred CCccccchhHHHhh-hcccCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHH
Confidence 88888999999998 578999999999999999988877654 34457777776665 4444444444
No 127
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.40 E-value=6.8e-12 Score=132.90 Aligned_cols=187 Identities=18% Similarity=0.210 Sum_probs=119.3
Q ss_pred ccccccc--ChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccc
Q 001707 727 VRFDDIG--ALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEA---GANFISITGSTL 801 (1023)
Q Consensus 727 vtfdDIg--Gle~vk~~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~el---g~~fi~vs~seL 801 (1023)
.+|+++. +.......++.++.. ..+.+|+|+||+|||||+||+++++++ +.+++.+++..+
T Consensus 12 ~~~~~~~~~~~~~~~~~l~~~~~~--------------~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~ 77 (226)
T TIGR03420 12 PTFDNFYAGGNAELLAALRQLAAG--------------KGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAEL 77 (226)
T ss_pred hhhcCcCcCCcHHHHHHHHHHHhc--------------CCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHH
Confidence 4566654 466677777776521 234579999999999999999999887 578888888776
Q ss_pred chhhhhhHHHHHHHHHHHHhhcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhcCccCCCCceEEEEEecCCCC
Q 001707 802 TSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPF 881 (1023)
Q Consensus 802 ~s~~~ge~e~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~~~~~VlVIaTTN~p~ 881 (1023)
.... ..++... ..+.+|+|||+|.+.... ... ..+...++.... ....+|++++..+.
T Consensus 78 ~~~~--------~~~~~~~--~~~~lLvIDdi~~l~~~~------~~~----~~L~~~l~~~~~--~~~~iIits~~~~~ 135 (226)
T TIGR03420 78 AQAD--------PEVLEGL--EQADLVCLDDVEAIAGQP------EWQ----EALFHLYNRVRE--AGGRLLIAGRAAPA 135 (226)
T ss_pred HHhH--------HHHHhhc--ccCCEEEEeChhhhcCCh------HHH----HHHHHHHHHHHH--cCCeEEEECCCChH
Confidence 5432 1222222 234699999999874221 011 122222222211 11234444444444
Q ss_pred CCc---HHHHhhcC--CceeecCCCHHHHHHHHHHHHhccccC-CccCHHHHHHHccCCcHHHHHHHHHHHHHHH
Q 001707 882 DLD---DAVIRRLP--RRIYVDLPDAENRMKILRIFLAHESLE-SGFQFNELANATEGYSGSDLKNLCIAAAYRP 950 (1023)
Q Consensus 882 ~Ld---~aLlrRFd--~~I~V~lPd~eeR~~ILk~~L~~~~l~-~dvdl~~LA~~TeGySgaDL~~L~~~Aa~~A 950 (1023)
.++ +.+.+||. ..+.+++|+.+++..+++.++....+. ++..+..|+.... -+.+++.++++.+...+
T Consensus 136 ~~~~~~~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~l~~L~~~~~-gn~r~L~~~l~~~~~~~ 209 (226)
T TIGR03420 136 QLPLRLPDLRTRLAWGLVFQLPPLSDEEKIAALQSRAARRGLQLPDEVADYLLRHGS-RDMGSLMALLDALDRAS 209 (226)
T ss_pred HCCcccHHHHHHHhcCeeEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcc-CCHHHHHHHHHHHHHHH
Confidence 332 78888874 678899999999999999877655443 3344677777544 48899999887765433
No 128
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.40 E-value=8.4e-12 Score=150.18 Aligned_cols=185 Identities=21% Similarity=0.289 Sum_probs=133.3
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC---------------
Q 001707 727 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGA--------------- 791 (1023)
Q Consensus 727 vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~elg~--------------- 791 (1023)
.+|++++|.+.+++.|+..+.. -+.++.+||+||+|||||++|+.+|+.+.+
T Consensus 13 ~~f~~viGq~~v~~~L~~~i~~-------------~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C 79 (559)
T PRK05563 13 QTFEDVVGQEHITKTLKNAIKQ-------------GKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEIC 79 (559)
T ss_pred CcHHhccCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHH
Confidence 5799999999999999998743 134567899999999999999999998742
Q ss_pred ---------cEEEEeccccchhhhhhHHHHHHHHHHHHhh----cCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHh
Q 001707 792 ---------NFISITGSTLTSKWFGDAEKLTKALFSFASK----LAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMS 858 (1023)
Q Consensus 792 ---------~fi~vs~seL~s~~~ge~e~~I~~lF~~A~k----~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~ 858 (1023)
+++.++++. ......++.+...+.. ...-|+||||+|.|.. ...+.|+.
T Consensus 80 ~~i~~g~~~dv~eidaas------~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~------------~a~naLLK 141 (559)
T PRK05563 80 KAITNGSLMDVIEIDAAS------NNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLST------------GAFNALLK 141 (559)
T ss_pred HHHhcCCCCCeEEeeccc------cCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCH------------HHHHHHHH
Confidence 344444422 1123345555555442 2346999999998831 23556776
Q ss_pred hhcCccCCCCceEEEEEecCCCCCCcHHHHhhcCCceeecCCCHHHHHHHHHHHHhccccC-CccCHHHHHHHccCCcHH
Q 001707 859 AWDGLRSKESQKILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLE-SGFQFNELANATEGYSGS 937 (1023)
Q Consensus 859 ~Ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~V~lPd~eeR~~ILk~~L~~~~l~-~dvdl~~LA~~TeGySga 937 (1023)
.++.. +..+++|.+|+.++.+.+.+++|+ ..+.|..|+.++...+++..+...++. ++..+..|+..+.| +.+
T Consensus 142 tLEep----p~~~ifIlatt~~~ki~~tI~SRc-~~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~ia~~s~G-~~R 215 (559)
T PRK05563 142 TLEEP----PAHVIFILATTEPHKIPATILSRC-QRFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARAAEG-GMR 215 (559)
T ss_pred HhcCC----CCCeEEEEEeCChhhCcHHHHhHh-eEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 66543 335666666777899999999999 468899999999999999988877654 33446777887776 777
Q ss_pred HHHHHHHHHHH
Q 001707 938 DLKNLCIAAAY 948 (1023)
Q Consensus 938 DL~~L~~~Aa~ 948 (1023)
++.+++..+..
T Consensus 216 ~al~~Ldq~~~ 226 (559)
T PRK05563 216 DALSILDQAIS 226 (559)
T ss_pred HHHHHHHHHHH
Confidence 77777765543
No 129
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.40 E-value=1.9e-11 Score=143.60 Aligned_cols=212 Identities=17% Similarity=0.236 Sum_probs=131.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEeccccchhhhhhHHH---HHHHHHHHHhhcCCeEEEeccchhhh
Q 001707 766 KGILLFGPPGTGKTLLAKALATEA-----GANFISITGSTLTSKWFGDAEK---LTKALFSFASKLAPVIIFVDEVDSLL 837 (1023)
Q Consensus 766 ~gVLL~GPPGTGKT~LArAIA~el-----g~~fi~vs~seL~s~~~ge~e~---~I~~lF~~A~k~~PsIIfIDEID~L~ 837 (1023)
.+++|||++|+|||+|++|+++++ +..++++++.++...+...... .+.. |.... ....+|+|||++.+.
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~~~~~~~~~-~~~~~-~~~dvLiIDDiq~l~ 219 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQKTHKEIEQ-FKNEI-CQNDVLIIDDVQFLS 219 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHHhhhHHHH-HHHHh-ccCCEEEEecccccc
Confidence 469999999999999999999965 5788889988877665443322 1211 22212 356799999999885
Q ss_pred hccCCCchhHHHHHHHHHHHhhhcCccCCCCceEEEEEecCCCCC---CcHHHHhhcCC--ceeecCCCHHHHHHHHHHH
Q 001707 838 GARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPFD---LDDAVIRRLPR--RIYVDLPDAENRMKILRIF 912 (1023)
Q Consensus 838 ~~r~~~~~~e~~~ril~~LL~~Ldgl~~~~~~~VlVIaTTN~p~~---Ld~aLlrRFd~--~I~V~lPd~eeR~~ILk~~ 912 (1023)
+... ..+ +|...++.+.. ..+.+||++...|.. +++.+.+||.. .+.+.+|+.++|.+|++..
T Consensus 220 ~k~~---~~e-------~lf~l~N~~~~--~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~ 287 (450)
T PRK14087 220 YKEK---TNE-------IFFTIFNNFIE--NDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKE 287 (450)
T ss_pred CCHH---HHH-------HHHHHHHHHHH--cCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHHH
Confidence 3221 112 22222222211 123344443344433 67899999964 4567789999999999999
Q ss_pred Hhcccc---CCccCHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCcCCCCHHHHHHHHHhh
Q 001707 913 LAHESL---ESGFQFNELANATEGYSGSDLKNLCIAAAYRPVQELLEEERKLFIQRGKNDAAPVLRPLKLEDFIQSKAKV 989 (1023)
Q Consensus 913 L~~~~l---~~dvdl~~LA~~TeGySgaDL~~L~~~Aa~~Airr~l~~e~~~~~~~~~~~~~~~~r~Lt~eDF~~Al~kv 989 (1023)
+...++ .++..+..||..+.| +.+.|..+|..+...+... ...++|+++.+.++++.+
T Consensus 288 ~~~~gl~~~l~~evl~~Ia~~~~g-d~R~L~gaL~~l~~~a~~~------------------~~~~~it~~~v~~~l~~~ 348 (450)
T PRK14087 288 IKNQNIKQEVTEEAINFISNYYSD-DVRKIKGSVSRLNFWSQQN------------------PEEKIITIEIVSDLFRDI 348 (450)
T ss_pred HHhcCCCCCCCHHHHHHHHHccCC-CHHHHHHHHHHHHHHHhcc------------------cCCCCCCHHHHHHHHhhc
Confidence 886543 234446778887776 7788888887765444321 001467888888887766
Q ss_pred CCCcccchhhHHH-HHHHHHHhC
Q 001707 990 GPSVAYDAASMNE-LRKWNEQYG 1011 (1023)
Q Consensus 990 ~PSvs~d~~~m~e-l~kW~d~yG 1011 (1023)
... .......+. .+...+.||
T Consensus 349 ~~~-~~~~~t~~~I~~~Va~~~~ 370 (450)
T PRK14087 349 PTS-KLGILNVKKIKEVVSEKYG 370 (450)
T ss_pred ccc-ccCCCCHHHHHHHHHHHcC
Confidence 321 111122333 335666677
No 130
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.39 E-value=6.1e-12 Score=150.38 Aligned_cols=185 Identities=22% Similarity=0.245 Sum_probs=131.7
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc--------------
Q 001707 727 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGAN-------------- 792 (1023)
Q Consensus 727 vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~elg~~-------------- 792 (1023)
.+|+||+|.+.+++.|..++.. -+.++.+||+||||+|||++|+++|+.+.+.
T Consensus 13 ~~f~divGq~~v~~~L~~~i~~-------------~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C 79 (527)
T PRK14969 13 KSFSELVGQEHVVRALTNALEQ-------------QRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSAC 79 (527)
T ss_pred CcHHHhcCcHHHHHHHHHHHHc-------------CCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHH
Confidence 4799999999999999988743 1334678999999999999999999998652
Q ss_pred ----------EEEEeccccchhhhhhHHHHHHHHHHHHhhc----CCeEEEeccchhhhhccCCCchhHHHHHHHHHHHh
Q 001707 793 ----------FISITGSTLTSKWFGDAEKLTKALFSFASKL----APVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMS 858 (1023)
Q Consensus 793 ----------fi~vs~seL~s~~~ge~e~~I~~lF~~A~k~----~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~ 858 (1023)
++.++.+. ......++.+...+... ...|+||||+|.+.. ...+.|+.
T Consensus 80 ~~i~~~~~~d~~ei~~~~------~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~------------~a~naLLK 141 (527)
T PRK14969 80 LEIDSGRFVDLIEVDAAS------NTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSK------------SAFNAMLK 141 (527)
T ss_pred HHHhcCCCCceeEeeccc------cCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCH------------HHHHHHHH
Confidence 22232211 11123455555555322 246999999998831 23466777
Q ss_pred hhcCccCCCCceEEEEEecCCCCCCcHHHHhhcCCceeecCCCHHHHHHHHHHHHhccccC-CccCHHHHHHHccCCcHH
Q 001707 859 AWDGLRSKESQKILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLE-SGFQFNELANATEGYSGS 937 (1023)
Q Consensus 859 ~Ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~V~lPd~eeR~~ILk~~L~~~~l~-~dvdl~~LA~~TeGySga 937 (1023)
.++.. ...+.+|.+|+.+..+.+.+++|+ ..+.|..++.++....+...+..+++. ++..+..|+..+.| +.+
T Consensus 142 ~LEep----p~~~~fIL~t~d~~kil~tI~SRc-~~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~la~~s~G-slr 215 (527)
T PRK14969 142 TLEEP----PEHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAAAG-SMR 215 (527)
T ss_pred HHhCC----CCCEEEEEEeCChhhCchhHHHHH-HHHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 77653 335667777777888888899998 688999999999999999888776654 33346777777765 777
Q ss_pred HHHHHHHHHHH
Q 001707 938 DLKNLCIAAAY 948 (1023)
Q Consensus 938 DL~~L~~~Aa~ 948 (1023)
++.+++..|..
T Consensus 216 ~al~lldqai~ 226 (527)
T PRK14969 216 DALSLLDQAIA 226 (527)
T ss_pred HHHHHHHHHHH
Confidence 87777776553
No 131
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.39 E-value=1.2e-11 Score=148.83 Aligned_cols=185 Identities=20% Similarity=0.266 Sum_probs=127.2
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc--------------
Q 001707 727 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGAN-------------- 792 (1023)
Q Consensus 727 vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~elg~~-------------- 792 (1023)
.+|+||+|.+.+++.|..++.. + +-++.+||+||||+|||++|+++|+.+.+.
T Consensus 13 ~sf~dIiGQe~v~~~L~~ai~~-----------~--ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC 79 (624)
T PRK14959 13 QTFAEVAGQETVKAILSRAAQE-----------N--RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQC 79 (624)
T ss_pred CCHHHhcCCHHHHHHHHHHHHc-----------C--CCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHH
Confidence 5799999999999999988743 1 223579999999999999999999998652
Q ss_pred ----------EEEEeccccchhhhhhHHHHHHHHHHH-HhhcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhc
Q 001707 793 ----------FISITGSTLTSKWFGDAEKLTKALFSF-ASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWD 861 (1023)
Q Consensus 793 ----------fi~vs~seL~s~~~ge~e~~I~~lF~~-A~k~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ld 861 (1023)
++.++...-. .+..... +...+.. .......||||||+|.|. ....+.|+..|+
T Consensus 80 ~~i~~g~hpDv~eId~a~~~--~Id~iR~-L~~~~~~~p~~g~~kVIIIDEad~Lt------------~~a~naLLk~LE 144 (624)
T PRK14959 80 RKVTQGMHVDVVEIDGASNR--GIDDAKR-LKEAIGYAPMEGRYKVFIIDEAHMLT------------REAFNALLKTLE 144 (624)
T ss_pred HHHhcCCCCceEEEeccccc--CHHHHHH-HHHHHHhhhhcCCceEEEEEChHhCC------------HHHHHHHHHHhh
Confidence 3444332110 1112222 2222222 122345799999999983 122466676665
Q ss_pred CccCCCCceEEEEEecCCCCCCcHHHHhhcCCceeecCCCHHHHHHHHHHHHhccccC-CccCHHHHHHHccCCcHHHHH
Q 001707 862 GLRSKESQKILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLE-SGFQFNELANATEGYSGSDLK 940 (1023)
Q Consensus 862 gl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~V~lPd~eeR~~ILk~~L~~~~l~-~dvdl~~LA~~TeGySgaDL~ 940 (1023)
.. ...+++|.+|+.+..+...+++|+ ..+.|..++.++...+|+..+...++. ++..+..|+..+.| +.+++.
T Consensus 145 EP----~~~~ifILaTt~~~kll~TI~SRc-q~i~F~pLs~~eL~~~L~~il~~egi~id~eal~lIA~~s~G-dlR~Al 218 (624)
T PRK14959 145 EP----PARVTFVLATTEPHKFPVTIVSRC-QHFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARRAAG-SVRDSM 218 (624)
T ss_pred cc----CCCEEEEEecCChhhhhHHHHhhh-hccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHH
Confidence 42 235777788888888888999998 578899999999999999888776642 44456777877776 455555
Q ss_pred HHHHH
Q 001707 941 NLCIA 945 (1023)
Q Consensus 941 ~L~~~ 945 (1023)
+++..
T Consensus 219 ~lLeq 223 (624)
T PRK14959 219 SLLGQ 223 (624)
T ss_pred HHHHH
Confidence 55543
No 132
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.39 E-value=1.1e-11 Score=153.85 Aligned_cols=226 Identities=16% Similarity=0.242 Sum_probs=147.5
Q ss_pred cccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccch-------
Q 001707 731 DIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTS------- 803 (1023)
Q Consensus 731 DIgGle~vk~~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~elg~~fi~vs~seL~s------- 803 (1023)
++.|++++|+.+.+++....... ......++|+||||+|||++++.+|..++.+|+.+++.....
T Consensus 323 ~~~g~~~vK~~i~~~l~~~~~~~--------~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~ 394 (784)
T PRK10787 323 DHYGLERVKDRILEYLAVQSRVN--------KIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGH 394 (784)
T ss_pred hccCHHHHHHHHHHHHHHHHhcc--------cCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccc
Confidence 48999999999998876432211 012346999999999999999999999999999988765422
Q ss_pred --hhhhhHHHHHHHHHHHHhhcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhcCcc-----------CCCCce
Q 001707 804 --KWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLR-----------SKESQK 870 (1023)
Q Consensus 804 --~~~ge~e~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~-----------~~~~~~ 870 (1023)
.|.|.....+.+.+..+....| ||+|||||.+....++. ....|+..+|.-. ...-.+
T Consensus 395 ~~~~~g~~~G~~~~~l~~~~~~~~-villDEidk~~~~~~g~--------~~~aLlevld~~~~~~~~d~~~~~~~dls~ 465 (784)
T PRK10787 395 RRTYIGSMPGKLIQKMAKVGVKNP-LFLLDEIDKMSSDMRGD--------PASALLEVLDPEQNVAFSDHYLEVDYDLSD 465 (784)
T ss_pred hhccCCCCCcHHHHHHHhcCCCCC-EEEEEChhhcccccCCC--------HHHHHHHHhccccEEEEecccccccccCCc
Confidence 2444444455555555544344 89999999997543221 1234554444210 012357
Q ss_pred EEEEEecCCCCCCcHHHHhhcCCceeecCCCHHHHHHHHHHHHhc-----cccC------CccCHHHHHHH-ccCCcHHH
Q 001707 871 ILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAH-----ESLE------SGFQFNELANA-TEGYSGSD 938 (1023)
Q Consensus 871 VlVIaTTN~p~~Ld~aLlrRFd~~I~V~lPd~eeR~~ILk~~L~~-----~~l~------~dvdl~~LA~~-TeGySgaD 938 (1023)
+++|+|+|.. .++++|++||. .|.+..++.++..+|.+.++.. ..+. .+..+..|++. +..+-.+.
T Consensus 466 v~~i~TaN~~-~i~~aLl~R~~-ii~~~~~t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~ai~~ii~~yt~e~GaR~ 543 (784)
T PRK10787 466 VMFVATSNSM-NIPAPLLDRME-VIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRS 543 (784)
T ss_pred eEEEEcCCCC-CCCHHHhccee-eeecCCCCHHHHHHHHHHhhhHHHHHHhCCCCCeEEECHHHHHHHHHhCCcccCCcH
Confidence 8999999887 59999999994 7889999999999999988742 1111 11224444432 22344577
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCcCCCCHHHHHHHHH
Q 001707 939 LKNLCIAAAYRPVQELLEEERKLFIQRGKNDAAPVLRPLKLEDFIQSKA 987 (1023)
Q Consensus 939 L~~L~~~Aa~~Airr~l~~e~~~~~~~~~~~~~~~~r~Lt~eDF~~Al~ 987 (1023)
|+.++...+..++.+.+... ......|+.+++.+.+.
T Consensus 544 LeR~I~~i~r~~l~~~~~~~------------~~~~v~v~~~~~~~~lg 580 (784)
T PRK10787 544 LEREISKLCRKAVKQLLLDK------------SLKHIEINGDNLHDYLG 580 (784)
T ss_pred HHHHHHHHHHHHHHHHHhcC------------CCceeeecHHHHHHHhC
Confidence 88777776666655543211 01123578888877765
No 133
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.39 E-value=8.9e-12 Score=148.08 Aligned_cols=184 Identities=19% Similarity=0.246 Sum_probs=129.2
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC---------------
Q 001707 727 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGA--------------- 791 (1023)
Q Consensus 727 vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~elg~--------------- 791 (1023)
.+|+||+|++.+++.|+.++.. + +.++.+||+||||||||++|+++|+.+.+
T Consensus 11 ~~~~dvvGq~~v~~~L~~~i~~-----------~--~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~ 77 (504)
T PRK14963 11 ITFDEVVGQEHVKEVLLAALRQ-----------G--RLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCL 77 (504)
T ss_pred CCHHHhcChHHHHHHHHHHHHc-----------C--CCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhH
Confidence 5799999999999999988743 1 23456799999999999999999998853
Q ss_pred --------cEEEEeccccchhhhhhHHHHHHHHHHHHhh----cCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhh
Q 001707 792 --------NFISITGSTLTSKWFGDAEKLTKALFSFASK----LAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSA 859 (1023)
Q Consensus 792 --------~fi~vs~seL~s~~~ge~e~~I~~lF~~A~k----~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~ 859 (1023)
.++.++...- .....++.+...+.. ..+.||||||+|.+. ....+.|+..
T Consensus 78 ~i~~~~h~dv~el~~~~~------~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls------------~~a~naLLk~ 139 (504)
T PRK14963 78 AVRRGAHPDVLEIDAASN------NSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMS------------KSAFNALLKT 139 (504)
T ss_pred HHhcCCCCceEEeccccc------CCHHHHHHHHHHHhhccccCCCeEEEEECccccC------------HHHHHHHHHH
Confidence 1344443211 112233444333322 345799999999762 2234566666
Q ss_pred hcCccCCCCceEEEEEecCCCCCCcHHHHhhcCCceeecCCCHHHHHHHHHHHHhccccC-CccCHHHHHHHccCCcHHH
Q 001707 860 WDGLRSKESQKILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLE-SGFQFNELANATEGYSGSD 938 (1023)
Q Consensus 860 Ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~V~lPd~eeR~~ILk~~L~~~~l~-~dvdl~~LA~~TeGySgaD 938 (1023)
++.. ...+++|.+|+.+..+.+.+.+|+ ..+.|..|+.++...+++..+...++. ++..+..|+..+.| ..++
T Consensus 140 LEep----~~~t~~Il~t~~~~kl~~~I~SRc-~~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia~~s~G-dlR~ 213 (504)
T PRK14963 140 LEEP----PEHVIFILATTEPEKMPPTILSRT-QHFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLADG-AMRD 213 (504)
T ss_pred HHhC----CCCEEEEEEcCChhhCChHHhcce-EEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHH
Confidence 5542 335677777888899999999998 478999999999999999998877654 33446777877776 5566
Q ss_pred HHHHHHHHH
Q 001707 939 LKNLCIAAA 947 (1023)
Q Consensus 939 L~~L~~~Aa 947 (1023)
+.++++.+.
T Consensus 214 aln~Lekl~ 222 (504)
T PRK14963 214 AESLLERLL 222 (504)
T ss_pred HHHHHHHHH
Confidence 666665543
No 134
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.39 E-value=9.3e-12 Score=140.74 Aligned_cols=185 Identities=20% Similarity=0.291 Sum_probs=129.8
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC---------------
Q 001707 727 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGA--------------- 791 (1023)
Q Consensus 727 vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~elg~--------------- 791 (1023)
.+|++++|.+.+++.|.+.+.. + +.++.+||+||||+|||++|+++|+.+..
T Consensus 11 ~~~~~iig~~~~~~~l~~~~~~-----------~--~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c 77 (355)
T TIGR02397 11 QTFEDVIGQEHIVQTLKNAIKN-----------G--RIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESC 77 (355)
T ss_pred CcHhhccCcHHHHHHHHHHHHc-----------C--CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHH
Confidence 5799999999999999987732 1 23467999999999999999999998742
Q ss_pred ---------cEEEEeccccchhhhhhHHHHHHHHHHHHhhc----CCeEEEeccchhhhhccCCCchhHHHHHHHHHHHh
Q 001707 792 ---------NFISITGSTLTSKWFGDAEKLTKALFSFASKL----APVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMS 858 (1023)
Q Consensus 792 ---------~fi~vs~seL~s~~~ge~e~~I~~lF~~A~k~----~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~ 858 (1023)
.++.++... ......++.++..+... ...||+|||+|.+.. ...+.|+.
T Consensus 78 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~------------~~~~~Ll~ 139 (355)
T TIGR02397 78 KEINSGSSLDVIEIDAAS------NNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSK------------SAFNALLK 139 (355)
T ss_pred HHHhcCCCCCEEEeeccc------cCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcCH------------HHHHHHHH
Confidence 233333321 11223355666655432 235999999998831 22456666
Q ss_pred hhcCccCCCCceEEEEEecCCCCCCcHHHHhhcCCceeecCCCHHHHHHHHHHHHhccccC-CccCHHHHHHHccCCcHH
Q 001707 859 AWDGLRSKESQKILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLE-SGFQFNELANATEGYSGS 937 (1023)
Q Consensus 859 ~Ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~V~lPd~eeR~~ILk~~L~~~~l~-~dvdl~~LA~~TeGySga 937 (1023)
.++.. ...+++|.+|+.+..+.+.+.+|+ ..+.+++|+.++...+++..+...++. ++..+..|+..+.| +.+
T Consensus 140 ~le~~----~~~~~lIl~~~~~~~l~~~l~sr~-~~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g-~~~ 213 (355)
T TIGR02397 140 TLEEP----PEHVVFILATTEPHKIPATILSRC-QRFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAADG-SLR 213 (355)
T ss_pred HHhCC----ccceeEEEEeCCHHHHHHHHHhhe-eEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-ChH
Confidence 66542 235667777788888889999998 578899999999999999988876653 33446667777765 666
Q ss_pred HHHHHHHHHHH
Q 001707 938 DLKNLCIAAAY 948 (1023)
Q Consensus 938 DL~~L~~~Aa~ 948 (1023)
.+.+.++.++.
T Consensus 214 ~a~~~lekl~~ 224 (355)
T TIGR02397 214 DALSLLDQLIS 224 (355)
T ss_pred HHHHHHHHHHh
Confidence 66666655544
No 135
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.38 E-value=1.9e-11 Score=130.43 Aligned_cols=200 Identities=20% Similarity=0.224 Sum_probs=125.9
Q ss_pred ccccccc--ChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccc
Q 001707 727 VRFDDIG--ALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEA---GANFISITGSTL 801 (1023)
Q Consensus 727 vtfdDIg--Gle~vk~~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~el---g~~fi~vs~seL 801 (1023)
.+|+++. +...+...++++... .....+++|+||+|||||+||+++++++ +.+++.+++..+
T Consensus 15 ~~~d~f~~~~~~~~~~~l~~~~~~-------------~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~ 81 (227)
T PRK08903 15 PTFDNFVAGENAELVARLRELAAG-------------PVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASP 81 (227)
T ss_pred hhhcccccCCcHHHHHHHHHHHhc-------------cCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHh
Confidence 6778754 345566666665421 1234579999999999999999999976 678888887664
Q ss_pred chhhhhhHHHHHHHHHHHHhhcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhcCccCCCCceEEEEEecCCCC
Q 001707 802 TSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPF 881 (1023)
Q Consensus 802 ~s~~~ge~e~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~~~~~VlVIaTTN~p~ 881 (1023)
... +. ......+|+|||+|.+... . ...|...++..... ...+++++++..+.
T Consensus 82 ~~~------------~~--~~~~~~~liiDdi~~l~~~--------~----~~~L~~~~~~~~~~-~~~~vl~~~~~~~~ 134 (227)
T PRK08903 82 LLA------------FD--FDPEAELYAVDDVERLDDA--------Q----QIALFNLFNRVRAH-GQGALLVAGPAAPL 134 (227)
T ss_pred HHH------------Hh--hcccCCEEEEeChhhcCch--------H----HHHHHHHHHHHHHc-CCcEEEEeCCCCHH
Confidence 321 11 1224679999999987321 1 11222233222111 12234444443332
Q ss_pred --CCcHHHHhhc--CCceeecCCCHHHHHHHHHHHHhccccC-CccCHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHH
Q 001707 882 --DLDDAVIRRL--PRRIYVDLPDAENRMKILRIFLAHESLE-SGFQFNELANATEGYSGSDLKNLCIAAAYRPVQELLE 956 (1023)
Q Consensus 882 --~Ld~aLlrRF--d~~I~V~lPd~eeR~~ILk~~L~~~~l~-~dvdl~~LA~~TeGySgaDL~~L~~~Aa~~Airr~l~ 956 (1023)
.+.+.+.+|| ...+.+++|+.+++..++..+.....+. ++..+..|+....| +.+++.++++.-...+..
T Consensus 135 ~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~~~al~~L~~~~~g-n~~~l~~~l~~l~~~~~~---- 209 (227)
T PRK08903 135 ALPLREDLRTRLGWGLVYELKPLSDADKIAALKAAAAERGLQLADEVPDYLLTHFRR-DMPSLMALLDALDRYSLE---- 209 (227)
T ss_pred hCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHHHHHHHH----
Confidence 3568888888 4588899999988999998877665543 33446777775554 778888777653322221
Q ss_pred HHHHHHHhhCCCCCCCCcCCCCHHHHHHHHH
Q 001707 957 EERKLFIQRGKNDAAPVLRPLKLEDFIQSKA 987 (1023)
Q Consensus 957 ~e~~~~~~~~~~~~~~~~r~Lt~eDF~~Al~ 987 (1023)
..++||+..+.+++.
T Consensus 210 ----------------~~~~i~~~~~~~~l~ 224 (227)
T PRK08903 210 ----------------QKRPVTLPLLREMLA 224 (227)
T ss_pred ----------------hCCCCCHHHHHHHHh
Confidence 115799888888875
No 136
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.38 E-value=1.3e-11 Score=147.31 Aligned_cols=184 Identities=20% Similarity=0.241 Sum_probs=128.4
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC---------------
Q 001707 727 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGA--------------- 791 (1023)
Q Consensus 727 vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~elg~--------------- 791 (1023)
.+|++++|.+.+++.|...+.. + +.++.+||+||+|+|||++|+++|+.+.+
T Consensus 13 ~~f~diiGq~~~v~~L~~~i~~-----------~--rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC 79 (546)
T PRK14957 13 QSFAEVAGQQHALNSLVHALET-----------Q--KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENC 79 (546)
T ss_pred CcHHHhcCcHHHHHHHHHHHHc-----------C--CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHH
Confidence 5799999999999999888743 1 23456899999999999999999998854
Q ss_pred ---------cEEEEeccccchhhhhhHHHHHHHHHHHHh----hcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHh
Q 001707 792 ---------NFISITGSTLTSKWFGDAEKLTKALFSFAS----KLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMS 858 (1023)
Q Consensus 792 ---------~fi~vs~seL~s~~~ge~e~~I~~lF~~A~----k~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~ 858 (1023)
.++.++...-. + -..++.+...+. .....|+||||+|.+.. ...+.|+.
T Consensus 80 ~~i~~~~~~dlieidaas~~----g--vd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~------------~a~naLLK 141 (546)
T PRK14957 80 VAINNNSFIDLIEIDAASRT----G--VEETKEILDNIQYMPSQGRYKVYLIDEVHMLSK------------QSFNALLK 141 (546)
T ss_pred HHHhcCCCCceEEeeccccc----C--HHHHHHHHHHHHhhhhcCCcEEEEEechhhccH------------HHHHHHHH
Confidence 23333322111 1 112233333332 22456999999998832 23456777
Q ss_pred hhcCccCCCCceEEEEEecCCCCCCcHHHHhhcCCceeecCCCHHHHHHHHHHHHhccccC-CccCHHHHHHHccCCcHH
Q 001707 859 AWDGLRSKESQKILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLE-SGFQFNELANATEGYSGS 937 (1023)
Q Consensus 859 ~Ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~V~lPd~eeR~~ILk~~L~~~~l~-~dvdl~~LA~~TeGySga 937 (1023)
.|+.. +..+.+|.+|+.+..+.+.+++|+ ..+.+..++.++...+++..+..+++. .+..+..|+..+.| +.+
T Consensus 142 ~LEep----p~~v~fIL~Ttd~~kil~tI~SRc-~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia~~s~G-dlR 215 (546)
T PRK14957 142 TLEEP----PEYVKFILATTDYHKIPVTILSRC-IQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHAKG-SLR 215 (546)
T ss_pred HHhcC----CCCceEEEEECChhhhhhhHHHhe-eeEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 76653 235666666677888888899999 689999999999999999888876654 33446677777765 777
Q ss_pred HHHHHHHHHH
Q 001707 938 DLKNLCIAAA 947 (1023)
Q Consensus 938 DL~~L~~~Aa 947 (1023)
++.++++.++
T Consensus 216 ~alnlLek~i 225 (546)
T PRK14957 216 DALSLLDQAI 225 (546)
T ss_pred HHHHHHHHHH
Confidence 7777776554
No 137
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.38 E-value=3.8e-11 Score=129.63 Aligned_cols=185 Identities=12% Similarity=0.073 Sum_probs=113.4
Q ss_pred Cccccccc--ChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC---CcEEEEeccc
Q 001707 726 GVRFDDIG--ALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAG---ANFISITGST 800 (1023)
Q Consensus 726 ~vtfdDIg--Gle~vk~~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~elg---~~fi~vs~se 800 (1023)
..+|+++. +...+...+..+... ....+++||||||||||+|++++++++. ..+..++...
T Consensus 18 ~~~fd~f~~~~n~~a~~~l~~~~~~--------------~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~ 83 (235)
T PRK08084 18 DETFASFYPGDNDSLLAALQNALRQ--------------EHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDK 83 (235)
T ss_pred cCCccccccCccHHHHHHHHHHHhC--------------CCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHH
Confidence 35677755 345566666655421 1124799999999999999999998763 4455555443
Q ss_pred cchhhhhhHHHHHHHHHHHHhhcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhcCccCCCCceEEEEEecCCC
Q 001707 801 LTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRP 880 (1023)
Q Consensus 801 L~s~~~ge~e~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~~~~~VlVIaTTN~p 880 (1023)
.... ...+..... ...+|+||||+.+.+... ..+....+++.+ ++ .+...+|+++++.|
T Consensus 84 ~~~~--------~~~~~~~~~--~~dlliiDdi~~~~~~~~---~~~~lf~l~n~~---~e-----~g~~~li~ts~~~p 142 (235)
T PRK08084 84 RAWF--------VPEVLEGME--QLSLVCIDNIECIAGDEL---WEMAIFDLYNRI---LE-----SGRTRLLITGDRPP 142 (235)
T ss_pred Hhhh--------hHHHHHHhh--hCCEEEEeChhhhcCCHH---HHHHHHHHHHHH---HH-----cCCCeEEEeCCCCh
Confidence 2211 111111111 136899999999853321 111222222222 11 11123455555666
Q ss_pred CC---CcHHHHhhcC--CceeecCCCHHHHHHHHHHHHhccccC-CccCHHHHHHHccCCcHHHHHHHHHHH
Q 001707 881 FD---LDDAVIRRLP--RRIYVDLPDAENRMKILRIFLAHESLE-SGFQFNELANATEGYSGSDLKNLCIAA 946 (1023)
Q Consensus 881 ~~---Ld~aLlrRFd--~~I~V~lPd~eeR~~ILk~~L~~~~l~-~dvdl~~LA~~TeGySgaDL~~L~~~A 946 (1023)
.. +.+.+++|+. .++.+.+|+.+++.++++..+...++. ++..+..|+....| +.+.+..+++..
T Consensus 143 ~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l~~~v~~~L~~~~~~-d~r~l~~~l~~l 213 (235)
T PRK08084 143 RQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQLRARLRGFELPEDVGRFLLKRLDR-EMRTLFMTLDQL 213 (235)
T ss_pred HHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhhcC-CHHHHHHHHHHH
Confidence 55 5789999996 577888999999999999876655443 44457788888886 677777776653
No 138
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.38 E-value=8.3e-12 Score=144.55 Aligned_cols=227 Identities=23% Similarity=0.323 Sum_probs=143.0
Q ss_pred ccccc-ccChHHHHHHHHHHHHcccCCchhh----ccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccc
Q 001707 727 VRFDD-IGALEDVKKALNELVILPMRRPDLF----SRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTL 801 (1023)
Q Consensus 727 vtfdD-IgGle~vk~~L~e~V~~pL~~pelf----~~~gli~p~~gVLL~GPPGTGKT~LArAIA~elg~~fi~vs~seL 801 (1023)
..+++ |+|++++++.+...+.....+-... ...+......+|||+||||||||++|+++|..++.+|..+++..+
T Consensus 73 ~~L~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L 152 (413)
T TIGR00382 73 AHLDEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTL 152 (413)
T ss_pred HHhcceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhc
Confidence 34444 6899999999988875443332110 001111224689999999999999999999999999999998877
Q ss_pred ch-hhhhhH-HHHHHHHHHHH----hhcCCeEEEeccchhhhhccCCCc-hhH-HHHHHHHHHHhhhcCccC--------
Q 001707 802 TS-KWFGDA-EKLTKALFSFA----SKLAPVIIFVDEVDSLLGARGGAF-EHE-ATRRMRNEFMSAWDGLRS-------- 865 (1023)
Q Consensus 802 ~s-~~~ge~-e~~I~~lF~~A----~k~~PsIIfIDEID~L~~~r~~~~-~~e-~~~ril~~LL~~Ldgl~~-------- 865 (1023)
.. .|.|.. +..+..++..+ ....++||||||||.+...+.+.. ... ....+.+.||..|+|...
T Consensus 153 ~~~gyvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v~~~~gr 232 (413)
T TIGR00382 153 TEAGYVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVANVPPQGGR 232 (413)
T ss_pred cccccccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHHHHHHhhccceecccCCCc
Confidence 53 576753 45555544432 345678999999999976543221 111 112456677777765431
Q ss_pred -CCCceEEEEEecCCCC--------------------------------------------------CCcHHHHhhcCCc
Q 001707 866 -KESQKILILGATNRPF--------------------------------------------------DLDDAVIRRLPRR 894 (1023)
Q Consensus 866 -~~~~~VlVIaTTN~p~--------------------------------------------------~Ld~aLlrRFd~~ 894 (1023)
.+..+.++|.|+|-.+ .+.|+|+.|++.+
T Consensus 233 ~~~~~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEflgRld~I 312 (413)
T TIGR00382 233 KHPYQEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFIGRLPVI 312 (413)
T ss_pred cccCCCeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHHhCCCCeE
Confidence 1223567777776510 0346777789988
Q ss_pred eeecCCCHHHHHHHHHHH----Hhc-------cccC---CccCHHHHHHH--ccCCcHHHHHHHHHHHHHHHHHH
Q 001707 895 IYVDLPDAENRMKILRIF----LAH-------ESLE---SGFQFNELANA--TEGYSGSDLKNLCIAAAYRPVQE 953 (1023)
Q Consensus 895 I~V~lPd~eeR~~ILk~~----L~~-------~~l~---~dvdl~~LA~~--TeGySgaDL~~L~~~Aa~~Airr 953 (1023)
+.+.+.+.++..+|+... ++. .++. ++..+..||+. ...+-.+-|+.+++.....++-+
T Consensus 313 v~f~pL~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~~~~~~~~GAR~Lr~iie~~l~~~m~e 387 (413)
T TIGR00382 313 ATLEKLDEEALIAILTKPKNALVKQYQALFKMDNVELDFEEEALKAIAKKALERKTGARGLRSIVEGLLLDVMFD 387 (413)
T ss_pred eecCCCCHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEECHHHHHHHHHhCCCCCCCchHHHHHHHHhhHHHHhh
Confidence 899999999999988752 221 1111 22235566665 23455677777776666555544
No 139
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.37 E-value=1.4e-11 Score=137.43 Aligned_cols=155 Identities=23% Similarity=0.277 Sum_probs=108.0
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccchhhh
Q 001707 727 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTSKWF 806 (1023)
Q Consensus 727 vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~elg~~fi~vs~seL~s~~~ 806 (1023)
.+|+++.|.+.+++.+..++.. + ..++.+||+||||+|||++|++++++.+.+++.+++.+ .. .
T Consensus 18 ~~~~~~~~~~~~~~~l~~~~~~-----------~--~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~--~~-~ 81 (316)
T PHA02544 18 STIDECILPAADKETFKSIVKK-----------G--RIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD--CR-I 81 (316)
T ss_pred CcHHHhcCcHHHHHHHHHHHhc-----------C--CCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc--cc-H
Confidence 5799999999999999988731 1 23345677999999999999999999999999998876 22 2
Q ss_pred hhHHHHHHHHHHHHh-hcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhcCccCCCCceEEEEEecCCCCCCcH
Q 001707 807 GDAEKLTKALFSFAS-KLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPFDLDD 885 (1023)
Q Consensus 807 ge~e~~I~~lF~~A~-k~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~~~~~VlVIaTTN~p~~Ld~ 885 (1023)
......+........ ...+.||+|||+|.+.. .. ... .|...++.. ...+.+|.|||.+..+.+
T Consensus 82 ~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~-------~~-~~~---~L~~~le~~----~~~~~~Ilt~n~~~~l~~ 146 (316)
T PHA02544 82 DFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGL-------AD-AQR---HLRSFMEAY----SKNCSFIITANNKNGIIE 146 (316)
T ss_pred HHHHHHHHHHHHhhcccCCCeEEEEECcccccC-------HH-HHH---HHHHHHHhc----CCCceEEEEcCChhhchH
Confidence 222222222111111 12578999999998721 11 112 222333332 234677889999999999
Q ss_pred HHHhhcCCceeecCCCHHHHHHHHHHHH
Q 001707 886 AVIRRLPRRIYVDLPDAENRMKILRIFL 913 (1023)
Q Consensus 886 aLlrRFd~~I~V~lPd~eeR~~ILk~~L 913 (1023)
++++||. .+.++.|+.+++..+++.++
T Consensus 147 ~l~sR~~-~i~~~~p~~~~~~~il~~~~ 173 (316)
T PHA02544 147 PLRSRCR-VIDFGVPTKEEQIEMMKQMI 173 (316)
T ss_pred HHHhhce-EEEeCCCCHHHHHHHHHHHH
Confidence 9999994 78899999999988776543
No 140
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.37 E-value=1.5e-11 Score=149.27 Aligned_cols=190 Identities=17% Similarity=0.204 Sum_probs=124.9
Q ss_pred ccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEEecc
Q 001707 730 DDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEA----------GANFISITGS 799 (1023)
Q Consensus 730 dDIgGle~vk~~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~el----------g~~fi~vs~s 799 (1023)
+.|.+.++..++|..++...+.. ..+...++|+|+||||||++++.+..++ .+.++.++|.
T Consensus 755 D~LPhREeEIeeLasfL~paIkg---------sgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm 825 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIKQ---------SGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGM 825 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHhc---------CCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCC
Confidence 56889999999998888543321 1233345799999999999999998776 2567899986
Q ss_pred ccchhhh----------------h-hHHHHHHHHHHHHh--hcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhh
Q 001707 800 TLTSKWF----------------G-DAEKLTKALFSFAS--KLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAW 860 (1023)
Q Consensus 800 eL~s~~~----------------g-e~e~~I~~lF~~A~--k~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~L 860 (1023)
.+...+. + .....+..+|.... .....||+|||||.|.... ..++..|+.+.
T Consensus 826 ~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~---------QDVLYnLFR~~ 896 (1164)
T PTZ00112 826 NVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKT---------QKVLFTLFDWP 896 (1164)
T ss_pred ccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccH---------HHHHHHHHHHh
Confidence 5432210 1 12345666776542 2345799999999996431 12233333322
Q ss_pred cCccCCCCceEEEEEecCC---CCCCcHHHHhhcCC-ceeecCCCHHHHHHHHHHHHhcc-ccCCccCHHHHHHHccCCc
Q 001707 861 DGLRSKESQKILILGATNR---PFDLDDAVIRRLPR-RIYVDLPDAENRMKILRIFLAHE-SLESGFQFNELANATEGYS 935 (1023)
Q Consensus 861 dgl~~~~~~~VlVIaTTN~---p~~Ld~aLlrRFd~-~I~V~lPd~eeR~~ILk~~L~~~-~l~~dvdl~~LA~~TeGyS 935 (1023)
. ....+++|||++|. +..|++.+.+||.. .|.|++++.+++.+||+..+... .+..+..+..+|+.+...
T Consensus 897 ~----~s~SKLiLIGISNdlDLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~- 971 (1164)
T PTZ00112 897 T----KINSKLVLIAISNTMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANV- 971 (1164)
T ss_pred h----ccCCeEEEEEecCchhcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhc-
Confidence 1 23457999999986 45577888888864 47889999999999999988743 222344466666655432
Q ss_pred HHHHHHH
Q 001707 936 GSDLKNL 942 (1023)
Q Consensus 936 gaDL~~L 942 (1023)
.+|++.+
T Consensus 972 SGDARKA 978 (1164)
T PTZ00112 972 SGDIRKA 978 (1164)
T ss_pred CCHHHHH
Confidence 2455544
No 141
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.37 E-value=1.4e-11 Score=153.16 Aligned_cols=187 Identities=20% Similarity=0.175 Sum_probs=128.4
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC---------------
Q 001707 727 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGA--------------- 791 (1023)
Q Consensus 727 vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~elg~--------------- 791 (1023)
.+|++|+|.+.+++.|+..+.. + +.++.+||+||+|||||++|+.||+.+.+
T Consensus 12 ~~f~eiiGqe~v~~~L~~~i~~-----------~--ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC 78 (824)
T PRK07764 12 ATFAEVIGQEHVTEPLSTALDS-----------G--RINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSC 78 (824)
T ss_pred CCHHHhcCcHHHHHHHHHHHHh-----------C--CCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHH
Confidence 5799999999999999988742 1 23456899999999999999999999864
Q ss_pred -----------cEEEEeccccchhhhhhHHHHHHHHHHHHhhcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhh
Q 001707 792 -----------NFISITGSTLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAW 860 (1023)
Q Consensus 792 -----------~fi~vs~seL~s~~~ge~e~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~L 860 (1023)
.|+.++..... .+.+....+..++.........|+||||+|.|.. ...|.|+..|
T Consensus 79 ~~~~~g~~~~~dv~eidaas~~--~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~------------~a~NaLLK~L 144 (824)
T PRK07764 79 VALAPGGPGSLDVTEIDAASHG--GVDDARELRERAFFAPAESRYKIFIIDEAHMVTP------------QGFNALLKIV 144 (824)
T ss_pred HHHHcCCCCCCcEEEecccccC--CHHHHHHHHHHHHhchhcCCceEEEEechhhcCH------------HHHHHHHHHH
Confidence 13333332211 1222223333333222334557999999999842 2356777777
Q ss_pred cCccCCCCceEEEEEecCCCCCCcHHHHhhcCCceeecCCCHHHHHHHHHHHHhccccC-CccCHHHHHHHccCCcHHHH
Q 001707 861 DGLRSKESQKILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLE-SGFQFNELANATEGYSGSDL 939 (1023)
Q Consensus 861 dgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~V~lPd~eeR~~ILk~~L~~~~l~-~dvdl~~LA~~TeGySgaDL 939 (1023)
+.. ...+++|.+|+.++.|.+.|++|+ ..+.|..++.++...+|+.++..+++. .+..+..|+..+.| +.+++
T Consensus 145 EEp----P~~~~fIl~tt~~~kLl~TIrSRc-~~v~F~~l~~~~l~~~L~~il~~EGv~id~eal~lLa~~sgG-dlR~A 218 (824)
T PRK07764 145 EEP----PEHLKFIFATTEPDKVIGTIRSRT-HHYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLVIRAGGG-SVRDS 218 (824)
T ss_pred hCC----CCCeEEEEEeCChhhhhHHHHhhe-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHH
Confidence 654 345777777788888999999998 678999999999999999988877654 22335556666665 55555
Q ss_pred HHHHHHH
Q 001707 940 KNLCIAA 946 (1023)
Q Consensus 940 ~~L~~~A 946 (1023)
.++++..
T Consensus 219 l~eLEKL 225 (824)
T PRK07764 219 LSVLDQL 225 (824)
T ss_pred HHHHHHH
Confidence 5555443
No 142
>PRK06893 DNA replication initiation factor; Validated
Probab=99.36 E-value=1.6e-11 Score=132.12 Aligned_cols=158 Identities=16% Similarity=0.198 Sum_probs=100.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccchhhhhhHHHHHHHHHHHHhhcCCeEEEeccchhhhhccCC
Q 001707 766 KGILLFGPPGTGKTLLAKALATEA---GANFISITGSTLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGG 842 (1023)
Q Consensus 766 ~gVLL~GPPGTGKT~LArAIA~el---g~~fi~vs~seL~s~~~ge~e~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~ 842 (1023)
+.++||||||||||+|++|+|+++ +.....++..... .....++... .+..+|+||||+.+.+...
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~--------~~~~~~~~~~--~~~dlLilDDi~~~~~~~~- 108 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQ--------YFSPAVLENL--EQQDLVCLDDLQAVIGNEE- 108 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhh--------hhhHHHHhhc--ccCCEEEEeChhhhcCChH-
Confidence 358999999999999999999986 3455555443211 1111222222 2457999999999854321
Q ss_pred CchhHHHHHHHHHHHhhhcCccCCCCceEEEEEecCCCCCCc---HHHHhhcC--CceeecCCCHHHHHHHHHHHHhccc
Q 001707 843 AFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPFDLD---DAVIRRLP--RRIYVDLPDAENRMKILRIFLAHES 917 (1023)
Q Consensus 843 ~~~~e~~~ril~~LL~~Ldgl~~~~~~~VlVIaTTN~p~~Ld---~aLlrRFd--~~I~V~lPd~eeR~~ILk~~L~~~~ 917 (1023)
. . ..++..++.... .+..++|++++..|..++ +.+.+|+. ..+.++.|+.++|.+|++..+....
T Consensus 109 -----~-~---~~l~~l~n~~~~-~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~ 178 (229)
T PRK06893 109 -----W-E---LAIFDLFNRIKE-QGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRG 178 (229)
T ss_pred -----H-H---HHHHHHHHHHHH-cCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcC
Confidence 1 1 122233332221 123455666666676654 78988764 5778999999999999998887655
Q ss_pred cC-CccCHHHHHHHccCCcHHHHHHHHHH
Q 001707 918 LE-SGFQFNELANATEGYSGSDLKNLCIA 945 (1023)
Q Consensus 918 l~-~dvdl~~LA~~TeGySgaDL~~L~~~ 945 (1023)
+. ++..+..|++...| +.+.+..+++.
T Consensus 179 l~l~~~v~~~L~~~~~~-d~r~l~~~l~~ 206 (229)
T PRK06893 179 IELSDEVANFLLKRLDR-DMHTLFDALDL 206 (229)
T ss_pred CCCCHHHHHHHHHhccC-CHHHHHHHHHH
Confidence 53 44446778887775 55666665553
No 143
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=8.1e-12 Score=148.66 Aligned_cols=172 Identities=22% Similarity=0.308 Sum_probs=125.0
Q ss_pred cccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccc--------
Q 001707 731 DIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLT-------- 802 (1023)
Q Consensus 731 DIgGle~vk~~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~elg~~fi~vs~seL~-------- 802 (1023)
|-.|++++|+.+.+++.-....+. . ...-++|+||||+|||+|++.||..++..|+.++...+.
T Consensus 324 dHYGLekVKeRIlEyLAV~~l~~~-------~-kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGH 395 (782)
T COG0466 324 DHYGLEKVKERILEYLAVQKLTKK-------L-KGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGH 395 (782)
T ss_pred cccCchhHHHHHHHHHHHHHHhcc-------C-CCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhccc
Confidence 567999999999998854322211 1 123588999999999999999999999999999876542
Q ss_pred -hhhhhhHHHHHHHHHHHHhhcCCeEEEeccchhhhhccCCCchhHHHHHHH-----HHHHhhhcCccCCCCceEEEEEe
Q 001707 803 -SKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMR-----NEFMSAWDGLRSKESQKILILGA 876 (1023)
Q Consensus 803 -s~~~ge~e~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~e~~~ril-----~~LL~~Ldgl~~~~~~~VlVIaT 876 (1023)
-.|+|.....+.+-...|....| +++|||||.+...-.+.. ..++-.++ +.|..+.-.+.. +-..|++|+|
T Consensus 396 RRTYIGamPGrIiQ~mkka~~~NP-v~LLDEIDKm~ss~rGDP-aSALLEVLDPEQN~~F~DhYLev~y-DLS~VmFiaT 472 (782)
T COG0466 396 RRTYIGAMPGKIIQGMKKAGVKNP-VFLLDEIDKMGSSFRGDP-ASALLEVLDPEQNNTFSDHYLEVPY-DLSKVMFIAT 472 (782)
T ss_pred cccccccCChHHHHHHHHhCCcCC-eEEeechhhccCCCCCCh-HHHHHhhcCHhhcCchhhccccCcc-chhheEEEee
Confidence 24788877777777788877766 667999999976543321 11111111 112222112211 2347999999
Q ss_pred cCCCCCCcHHHHhhcCCceeecCCCHHHHHHHHHHHHh
Q 001707 877 TNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLA 914 (1023)
Q Consensus 877 TN~p~~Ld~aLlrRFd~~I~V~lPd~eeR~~ILk~~L~ 914 (1023)
+|..+.++.+|++|+ .+|.+.-.+.++..+|.+.|+-
T Consensus 473 ANsl~tIP~PLlDRM-EiI~lsgYt~~EKl~IAk~~Li 509 (782)
T COG0466 473 ANSLDTIPAPLLDRM-EVIRLSGYTEDEKLEIAKRHLI 509 (782)
T ss_pred cCccccCChHHhcce-eeeeecCCChHHHHHHHHHhcc
Confidence 999999999999999 5899999999999999998863
No 144
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.35 E-value=2.7e-11 Score=145.85 Aligned_cols=188 Identities=18% Similarity=0.197 Sum_probs=127.3
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC---------------
Q 001707 727 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGA--------------- 791 (1023)
Q Consensus 727 vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~elg~--------------- 791 (1023)
.+|+||+|++.+++.|+.++.. + +.++.+||+||+|||||++|+++|+.+.+
T Consensus 10 ~~f~eivGq~~i~~~L~~~i~~-----------~--r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C 76 (584)
T PRK14952 10 ATFAEVVGQEHVTEPLSSALDA-----------G--RINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESC 76 (584)
T ss_pred CcHHHhcCcHHHHHHHHHHHHc-----------C--CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHH
Confidence 4799999999999999998742 1 33456899999999999999999998753
Q ss_pred -----------cEEEEeccccchhhhhhHHHHHHHHHHHHhhcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhh
Q 001707 792 -----------NFISITGSTLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAW 860 (1023)
Q Consensus 792 -----------~fi~vs~seL~s~~~ge~e~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~L 860 (1023)
.++.++.+... .+......+..+...-.....-|+||||+|.|.. ...+.|+..|
T Consensus 77 ~~i~~~~~~~~dvieidaas~~--gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~------------~A~NALLK~L 142 (584)
T PRK14952 77 VALAPNGPGSIDVVELDAASHG--GVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTT------------AGFNALLKIV 142 (584)
T ss_pred HHhhcccCCCceEEEecccccc--CHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCH------------HHHHHHHHHH
Confidence 13333332211 1122222222222111123346999999999842 2356677777
Q ss_pred cCccCCCCceEEEEEecCCCCCCcHHHHhhcCCceeecCCCHHHHHHHHHHHHhccccC-CccCHHHHHHHccCCcHHHH
Q 001707 861 DGLRSKESQKILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLE-SGFQFNELANATEGYSGSDL 939 (1023)
Q Consensus 861 dgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~V~lPd~eeR~~ILk~~L~~~~l~-~dvdl~~LA~~TeGySgaDL 939 (1023)
+.. ...+++|.+|+.+..+.+.+++|+ ..+.|..++.++..+++..++...++. ++..+..|+..+.| +.+++
T Consensus 143 EEp----p~~~~fIL~tte~~kll~TI~SRc-~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~al~~Ia~~s~G-dlR~a 216 (584)
T PRK14952 143 EEP----PEHLIFIFATTEPEKVLPTIRSRT-HHYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVIRAGGG-SPRDT 216 (584)
T ss_pred hcC----CCCeEEEEEeCChHhhHHHHHHhc-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHH
Confidence 653 346777777788889999999997 678999999999999999988877653 33335556665554 66666
Q ss_pred HHHHHHHH
Q 001707 940 KNLCIAAA 947 (1023)
Q Consensus 940 ~~L~~~Aa 947 (1023)
.++++.++
T Consensus 217 ln~Ldql~ 224 (584)
T PRK14952 217 LSVLDQLL 224 (584)
T ss_pred HHHHHHHH
Confidence 66665543
No 145
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.34 E-value=2.3e-11 Score=145.68 Aligned_cols=183 Identities=17% Similarity=0.248 Sum_probs=128.4
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC---------------
Q 001707 727 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGA--------------- 791 (1023)
Q Consensus 727 vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~elg~--------------- 791 (1023)
.+|++++|.+.+++.|...+.. + +.++.+||+||+|+|||++|+++|+.+.+
T Consensus 13 ~~F~dIIGQe~iv~~L~~aI~~-----------~--rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sC 79 (605)
T PRK05896 13 HNFKQIIGQELIKKILVNAILN-----------N--KLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVC 79 (605)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc-----------C--CCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHH
Confidence 5799999999999999887732 1 23467999999999999999999998743
Q ss_pred ---------cEEEEeccccchhhhhhHHHHHHHHHHHHhhc----CCeEEEeccchhhhhccCCCchhHHHHHHHHHHHh
Q 001707 792 ---------NFISITGSTLTSKWFGDAEKLTKALFSFASKL----APVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMS 858 (1023)
Q Consensus 792 ---------~fi~vs~seL~s~~~ge~e~~I~~lF~~A~k~----~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~ 858 (1023)
.++.+++... ..-..++.+...+... ...|++|||+|.|.. ...+.|+.
T Consensus 80 r~i~~~~h~DiieIdaas~------igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~------------~A~NaLLK 141 (605)
T PRK05896 80 ESINTNQSVDIVELDAASN------NGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLST------------SAWNALLK 141 (605)
T ss_pred HHHHcCCCCceEEeccccc------cCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCH------------HHHHHHHH
Confidence 2333333211 1112344444444322 246999999998831 12456776
Q ss_pred hhcCccCCCCceEEEEEecCCCCCCcHHHHhhcCCceeecCCCHHHHHHHHHHHHhccccC-CccCHHHHHHHccCCcHH
Q 001707 859 AWDGLRSKESQKILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLE-SGFQFNELANATEGYSGS 937 (1023)
Q Consensus 859 ~Ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~V~lPd~eeR~~ILk~~L~~~~l~-~dvdl~~LA~~TeGySga 937 (1023)
.|+.. +..+++|.+|+.+..+.+.+++|+ ..+.+.+|+..+...+++..+...++. ++..+..++..+.| +.+
T Consensus 142 tLEEP----p~~tvfIL~Tt~~~KLl~TI~SRc-q~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~La~lS~G-dlR 215 (605)
T PRK05896 142 TLEEP----PKHVVFIFATTEFQKIPLTIISRC-QRYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLADG-SLR 215 (605)
T ss_pred HHHhC----CCcEEEEEECCChHhhhHHHHhhh-hhcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-cHH
Confidence 66553 335667777778899999999999 478999999999999999888776542 34446777877776 666
Q ss_pred HHHHHHHHH
Q 001707 938 DLKNLCIAA 946 (1023)
Q Consensus 938 DL~~L~~~A 946 (1023)
++.++++.+
T Consensus 216 ~AlnlLekL 224 (605)
T PRK05896 216 DGLSILDQL 224 (605)
T ss_pred HHHHHHHHH
Confidence 666666653
No 146
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.33 E-value=2e-11 Score=150.19 Aligned_cols=181 Identities=23% Similarity=0.336 Sum_probs=121.7
Q ss_pred cccccccChHHHHH---HHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccch
Q 001707 727 VRFDDIGALEDVKK---ALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTS 803 (1023)
Q Consensus 727 vtfdDIgGle~vk~---~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~elg~~fi~vs~seL~s 803 (1023)
.+|+|++|.+.+.. .|+.++.. ....++|||||||||||+||+++|+..+.+|+.+++....
T Consensus 25 ~tldd~vGQe~ii~~~~~L~~~i~~--------------~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~~- 89 (725)
T PRK13341 25 RTLEEFVGQDHILGEGRLLRRAIKA--------------DRVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLAG- 89 (725)
T ss_pred CcHHHhcCcHHHhhhhHHHHHHHhc--------------CCCceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhhh-
Confidence 57899999998885 45555421 1224799999999999999999999999999888765311
Q ss_pred hhhhhHHHHHHHHHHHH-----hhcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhcCccCCCCceEEEEEec-
Q 001707 804 KWFGDAEKLTKALFSFA-----SKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGAT- 877 (1023)
Q Consensus 804 ~~~ge~e~~I~~lF~~A-----~k~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~~~~~VlVIaTT- 877 (1023)
. ..++..+..+ ......||||||||.+.... .+.|+..++ ...+++|++|
T Consensus 90 --i----~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~q------------QdaLL~~lE------~g~IiLI~aTT 145 (725)
T PRK13341 90 --V----KDLRAEVDRAKERLERHGKRTILFIDEVHRFNKAQ------------QDALLPWVE------NGTITLIGATT 145 (725)
T ss_pred --h----HHHHHHHHHHHHHhhhcCCceEEEEeChhhCCHHH------------HHHHHHHhc------CceEEEEEecC
Confidence 1 1122222222 11245799999999984211 123333332 2356777665
Q ss_pred -CCCCCCcHHHHhhcCCceeecCCCHHHHHHHHHHHHhc-------cccC-CccCHHHHHHHccCCcHHHHHHHHHHHHH
Q 001707 878 -NRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAH-------ESLE-SGFQFNELANATEGYSGSDLKNLCIAAAY 948 (1023)
Q Consensus 878 -N~p~~Ld~aLlrRFd~~I~V~lPd~eeR~~ILk~~L~~-------~~l~-~dvdl~~LA~~TeGySgaDL~~L~~~Aa~ 948 (1023)
|....+++++++|+ ..+.+++++.+++..+++..+.. ..+. ++..+..|+....| ..+.+.++++.|+.
T Consensus 146 enp~~~l~~aL~SR~-~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~G-D~R~lln~Le~a~~ 223 (725)
T PRK13341 146 ENPYFEVNKALVSRS-RLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANG-DARSLLNALELAVE 223 (725)
T ss_pred CChHhhhhhHhhccc-cceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 33356899999997 57899999999999999998862 2222 33346777777754 66777777776653
No 147
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.33 E-value=2.6e-11 Score=146.45 Aligned_cols=182 Identities=21% Similarity=0.246 Sum_probs=128.3
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc--------------
Q 001707 727 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGAN-------------- 792 (1023)
Q Consensus 727 vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~elg~~-------------- 792 (1023)
.+|+||+|.+.+++.|...+.. + +.++.+|||||+|+|||++|+++|+.+.+.
T Consensus 13 ~~f~~iiGq~~v~~~L~~~i~~-----------~--~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c 79 (576)
T PRK14965 13 QTFSDLTGQEHVSRTLQNAIDT-----------G--RVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPC 79 (576)
T ss_pred CCHHHccCcHHHHHHHHHHHHc-----------C--CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHH
Confidence 5799999999999999998743 1 345678999999999999999999998532
Q ss_pred ----------EEEEeccccchhhhhhHHHHHHHHHHHHhhc----CCeEEEeccchhhhhccCCCchhHHHHHHHHHHHh
Q 001707 793 ----------FISITGSTLTSKWFGDAEKLTKALFSFASKL----APVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMS 858 (1023)
Q Consensus 793 ----------fi~vs~seL~s~~~ge~e~~I~~lF~~A~k~----~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~ 858 (1023)
++.++.... ..-..++.+...+... ...|++|||+|.|.. ...+.|+.
T Consensus 80 ~~i~~g~~~d~~eid~~s~------~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~------------~a~naLLk 141 (576)
T PRK14965 80 VEITEGRSVDVFEIDGASN------TGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLST------------NAFNALLK 141 (576)
T ss_pred HHHhcCCCCCeeeeeccCc------cCHHHHHHHHHHHHhccccCCceEEEEEChhhCCH------------HHHHHHHH
Confidence 333433221 1122344444444321 235999999998842 23467777
Q ss_pred hhcCccCCCCceEEEEEecCCCCCCcHHHHhhcCCceeecCCCHHHHHHHHHHHHhccccC-CccCHHHHHHHccCCcHH
Q 001707 859 AWDGLRSKESQKILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLE-SGFQFNELANATEGYSGS 937 (1023)
Q Consensus 859 ~Ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~V~lPd~eeR~~ILk~~L~~~~l~-~dvdl~~LA~~TeGySga 937 (1023)
.|+.. ...+++|.+|+.++.|.+.+++|+ ..+.|..++.++....+..++...++. ++..+..|+..+.| +.+
T Consensus 142 ~LEep----p~~~~fIl~t~~~~kl~~tI~SRc-~~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~la~~a~G-~lr 215 (576)
T PRK14965 142 TLEEP----PPHVKFIFATTEPHKVPITILSRC-QRFDFRRIPLQKIVDRLRYIADQEGISISDAALALVARKGDG-SMR 215 (576)
T ss_pred HHHcC----CCCeEEEEEeCChhhhhHHHHHhh-hhhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC-CHH
Confidence 77653 345777778888899999999998 578899999999999998888877654 34446677777776 555
Q ss_pred HHHHHHHH
Q 001707 938 DLKNLCIA 945 (1023)
Q Consensus 938 DL~~L~~~ 945 (1023)
++.+++..
T Consensus 216 ~al~~Ldq 223 (576)
T PRK14965 216 DSLSTLDQ 223 (576)
T ss_pred HHHHHHHH
Confidence 55555543
No 148
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.32 E-value=4.1e-11 Score=146.12 Aligned_cols=190 Identities=19% Similarity=0.260 Sum_probs=130.4
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEE---ec-----
Q 001707 727 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISI---TG----- 798 (1023)
Q Consensus 727 vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~elg~~fi~v---s~----- 798 (1023)
.+|++|+|++.+++.|+..+.. + +.++.+||+||+|+|||++|+++|+.+.+.-... .|
T Consensus 15 ~~f~dIiGQe~~v~~L~~aI~~-----------~--rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~ 81 (725)
T PRK07133 15 KTFDDIVGQDHIVQTLKNIIKS-----------N--KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIE 81 (725)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc-----------C--CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHH
Confidence 5799999999999999998843 1 3346789999999999999999999885421000 00
Q ss_pred -----cccc--hhhhhhHHHHHHHHHHHHhhc----CCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhcCccCCC
Q 001707 799 -----STLT--SKWFGDAEKLTKALFSFASKL----APVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKE 867 (1023)
Q Consensus 799 -----seL~--s~~~ge~e~~I~~lF~~A~k~----~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~~ 867 (1023)
.++. ..........++.+...+... ...|++|||+|.|.. ...+.|+..|+..
T Consensus 82 ~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~------------~A~NALLKtLEEP---- 145 (725)
T PRK07133 82 NVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSK------------SAFNALLKTLEEP---- 145 (725)
T ss_pred hhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCH------------HHHHHHHHHhhcC----
Confidence 0000 000001123355665555432 346999999998842 2356777777653
Q ss_pred CceEEEEEecCCCCCCcHHHHhhcCCceeecCCCHHHHHHHHHHHHhccccC-CccCHHHHHHHccCCcHHHHHHHHHHH
Q 001707 868 SQKILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLE-SGFQFNELANATEGYSGSDLKNLCIAA 946 (1023)
Q Consensus 868 ~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~V~lPd~eeR~~ILk~~L~~~~l~-~dvdl~~LA~~TeGySgaDL~~L~~~A 946 (1023)
+..+++|.+|+.++.|.+.+++|+ ..+.|.+|+.++...+++..+...++. .+..+..||..+.| +.+++..++..+
T Consensus 146 P~~tifILaTte~~KLl~TI~SRc-q~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~lS~G-slR~AlslLekl 223 (725)
T PRK07133 146 PKHVIFILATTEVHKIPLTILSRV-QRFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSG-SLRDALSIAEQV 223 (725)
T ss_pred CCceEEEEEcCChhhhhHHHHhhc-eeEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHH
Confidence 345677777788899999999999 478999999999999999888776654 22336677777776 666666666554
Q ss_pred H
Q 001707 947 A 947 (1023)
Q Consensus 947 a 947 (1023)
+
T Consensus 224 ~ 224 (725)
T PRK07133 224 S 224 (725)
T ss_pred H
Confidence 3
No 149
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.31 E-value=6.2e-11 Score=135.56 Aligned_cols=184 Identities=17% Similarity=0.233 Sum_probs=125.6
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc----------E--E
Q 001707 727 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGAN----------F--I 794 (1023)
Q Consensus 727 vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~elg~~----------f--i 794 (1023)
.+|+|++|.+.+++.+...+.. + ..++++|||||||+|||++|+++|+.+..+ + +
T Consensus 14 ~~~~~iig~~~~~~~l~~~i~~-----------~--~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~ 80 (367)
T PRK14970 14 QTFDDVVGQSHITNTLLNAIEN-----------N--HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIF 80 (367)
T ss_pred CcHHhcCCcHHHHHHHHHHHHc-----------C--CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceE
Confidence 5799999999999999988732 1 234689999999999999999999987542 1 1
Q ss_pred EEeccccchhhhhhHHHHHHHHHHHHhhc----CCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhcCccCCCCce
Q 001707 795 SITGSTLTSKWFGDAEKLTKALFSFASKL----APVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQK 870 (1023)
Q Consensus 795 ~vs~seL~s~~~ge~e~~I~~lF~~A~k~----~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~~~~~ 870 (1023)
.++... ......++.++..+... ...||+|||+|.+.. ...+.|+..++.. ...
T Consensus 81 ~l~~~~------~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~------------~~~~~ll~~le~~----~~~ 138 (367)
T PRK14970 81 ELDAAS------NNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSS------------AAFNAFLKTLEEP----PAH 138 (367)
T ss_pred Eecccc------CCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCH------------HHHHHHHHHHhCC----CCc
Confidence 121111 11124455666655322 346999999998732 1245566555442 223
Q ss_pred EEEEEecCCCCCCcHHHHhhcCCceeecCCCHHHHHHHHHHHHhccccC-CccCHHHHHHHccCCcHHHHHHHHHHHH
Q 001707 871 ILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLE-SGFQFNELANATEGYSGSDLKNLCIAAA 947 (1023)
Q Consensus 871 VlVIaTTN~p~~Ld~aLlrRFd~~I~V~lPd~eeR~~ILk~~L~~~~l~-~dvdl~~LA~~TeGySgaDL~~L~~~Aa 947 (1023)
.++|.+|+.+..+.+++.+|+ ..+.+..|+.++...++...+...++. ++..+..|+..+.| +.+.+.+.++...
T Consensus 139 ~~~Il~~~~~~kl~~~l~sr~-~~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~~g-dlr~~~~~lekl~ 214 (367)
T PRK14970 139 AIFILATTEKHKIIPTILSRC-QIFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADG-ALRDALSIFDRVV 214 (367)
T ss_pred eEEEEEeCCcccCCHHHHhcc-eeEecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 555556777788999999998 468899999999999999888776653 44456777776664 5555555554433
No 150
>PRK08727 hypothetical protein; Validated
Probab=99.31 E-value=6.8e-11 Score=127.57 Aligned_cols=179 Identities=21% Similarity=0.190 Sum_probs=109.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccchhhhhhHHHHHHHHHHHHhhcCCeEEEeccchhhhhccCC
Q 001707 766 KGILLFGPPGTGKTLLAKALATEA---GANFISITGSTLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGG 842 (1023)
Q Consensus 766 ~gVLL~GPPGTGKT~LArAIA~el---g~~fi~vs~seL~s~~~ge~e~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~ 842 (1023)
..++|+||+|||||+|+.|+++++ +..++.++..++.. .+..++... ....+|+|||++.+.....
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~~--------~~~~~~~~l--~~~dlLiIDDi~~l~~~~~- 110 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAAG--------RLRDALEAL--EGRSLVALDGLESIAGQRE- 110 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhhh--------hHHHHHHHH--hcCCEEEEeCcccccCChH-
Confidence 359999999999999999998775 66667776544322 222333322 2457999999998854321
Q ss_pred CchhHHHHHHHHHHHhhhcCccCCCCceEEEEEec-CCCCCC---cHHHHhhc--CCceeecCCCHHHHHHHHHHHHhcc
Q 001707 843 AFEHEATRRMRNEFMSAWDGLRSKESQKILILGAT-NRPFDL---DDAVIRRL--PRRIYVDLPDAENRMKILRIFLAHE 916 (1023)
Q Consensus 843 ~~~~e~~~ril~~LL~~Ldgl~~~~~~~VlVIaTT-N~p~~L---d~aLlrRF--d~~I~V~lPd~eeR~~ILk~~L~~~ 916 (1023)
... .++..++.... . +..||.|+ ..|..+ .+.+.+|| ...+.+++|+.+++.+|++..+...
T Consensus 111 -----~~~----~lf~l~n~~~~--~-~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~a~~~ 178 (233)
T PRK08727 111 -----DEV----ALFDFHNRARA--A-GITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRERAQRR 178 (233)
T ss_pred -----HHH----HHHHHHHHHHH--c-CCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHHHHHc
Confidence 111 12222222211 1 22244444 455554 68999997 4567889999999999999877655
Q ss_pred ccC-CccCHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCcCCCCHHHHHHHHHh
Q 001707 917 SLE-SGFQFNELANATEGYSGSDLKNLCIAAAYRPVQELLEEERKLFIQRGKNDAAPVLRPLKLEDFIQSKAK 988 (1023)
Q Consensus 917 ~l~-~dvdl~~LA~~TeGySgaDL~~L~~~Aa~~Airr~l~~e~~~~~~~~~~~~~~~~r~Lt~eDF~~Al~k 988 (1023)
.+. ++..+..|+..+.| ..+.+.++++.....+... .++||.+.+.+.+..
T Consensus 179 ~l~l~~e~~~~La~~~~r-d~r~~l~~L~~l~~~~~~~--------------------~~~it~~~~~~~l~~ 230 (233)
T PRK08727 179 GLALDEAAIDWLLTHGER-ELAGLVALLDRLDRESLAA--------------------KRRVTVPFLRRVLEE 230 (233)
T ss_pred CCCCCHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHh--------------------CCCCCHHHHHHHHhh
Confidence 443 34456778877764 3344444444322212110 146888888877754
No 151
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.31 E-value=7.3e-11 Score=138.83 Aligned_cols=187 Identities=22% Similarity=0.300 Sum_probs=126.9
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC---------------
Q 001707 727 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGA--------------- 791 (1023)
Q Consensus 727 vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~elg~--------------- 791 (1023)
.+|+||+|.+.++..|...+.. + +.++.+|||||||+|||++|+++|+.+..
T Consensus 14 ~~~~diiGq~~~v~~L~~~i~~-----------~--~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~ 80 (451)
T PRK06305 14 QTFSEILGQDAVVAVLKNALRF-----------N--RAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCAS 80 (451)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc-----------C--CCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHH
Confidence 5799999999999999988732 1 33467999999999999999999998743
Q ss_pred ----------cEEEEeccccchhhhhhHHHHHHHHHHHHhhcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhc
Q 001707 792 ----------NFISITGSTLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWD 861 (1023)
Q Consensus 792 ----------~fi~vs~seL~s~~~ge~e~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ld 861 (1023)
.++.+++....+ ..........+-.........||||||+|.+.. ...+.|+..++
T Consensus 81 C~~i~~~~~~d~~~i~g~~~~g--id~ir~i~~~l~~~~~~~~~kvvIIdead~lt~------------~~~n~LLk~lE 146 (451)
T PRK06305 81 CKEISSGTSLDVLEIDGASHRG--IEDIRQINETVLFTPSKSRYKIYIIDEVHMLTK------------EAFNSLLKTLE 146 (451)
T ss_pred HHHHhcCCCCceEEeeccccCC--HHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCH------------HHHHHHHHHhh
Confidence 233343321110 111111111111111234568999999998841 12456666665
Q ss_pred CccCCCCceEEEEEecCCCCCCcHHHHhhcCCceeecCCCHHHHHHHHHHHHhccccC-CccCHHHHHHHccCCcHHHHH
Q 001707 862 GLRSKESQKILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLE-SGFQFNELANATEGYSGSDLK 940 (1023)
Q Consensus 862 gl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~V~lPd~eeR~~ILk~~L~~~~l~-~dvdl~~LA~~TeGySgaDL~ 940 (1023)
.. ...+++|.+|+.+..|.+.+++|+ ..+.+..++.++...++...+...++. ++..+..|+..+.| +.+++.
T Consensus 147 ep----~~~~~~Il~t~~~~kl~~tI~sRc-~~v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~~~s~g-dlr~a~ 220 (451)
T PRK06305 147 EP----PQHVKFFLATTEIHKIPGTILSRC-QKMHLKRIPEETIIDKLALIAKQEGIETSREALLPIARAAQG-SLRDAE 220 (451)
T ss_pred cC----CCCceEEEEeCChHhcchHHHHhc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHH
Confidence 53 235667777788889999999999 478999999999999999888776643 33456778877765 555555
Q ss_pred HHHHHH
Q 001707 941 NLCIAA 946 (1023)
Q Consensus 941 ~L~~~A 946 (1023)
++++..
T Consensus 221 ~~Lekl 226 (451)
T PRK06305 221 SLYDYV 226 (451)
T ss_pred HHHHHH
Confidence 555443
No 152
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.30 E-value=5.6e-11 Score=142.95 Aligned_cols=183 Identities=19% Similarity=0.209 Sum_probs=128.5
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc--------------
Q 001707 727 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGAN-------------- 792 (1023)
Q Consensus 727 vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~elg~~-------------- 792 (1023)
.+|+||+|++.+++.|+..+.. + +.++.+|||||+|+|||++|+++|+.+.+.
T Consensus 13 ~~f~diiGqe~iv~~L~~~i~~-----------~--~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C 79 (563)
T PRK06647 13 RDFNSLEGQDFVVETLKHSIES-----------N--KIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSC 79 (563)
T ss_pred CCHHHccCcHHHHHHHHHHHHc-----------C--CCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHH
Confidence 5799999999999999988742 1 234679999999999999999999998542
Q ss_pred ----------EEEEeccccchhhhhhHHHHHHHHHHHHh----hcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHh
Q 001707 793 ----------FISITGSTLTSKWFGDAEKLTKALFSFAS----KLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMS 858 (1023)
Q Consensus 793 ----------fi~vs~seL~s~~~ge~e~~I~~lF~~A~----k~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~ 858 (1023)
++.+++.. ...-..++.+...+. .....|++|||+|.|. ....+.|+.
T Consensus 80 ~~i~~~~~~dv~~idgas------~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls------------~~a~naLLK 141 (563)
T PRK06647 80 KSIDNDNSLDVIEIDGAS------NTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLS------------NSAFNALLK 141 (563)
T ss_pred HHHHcCCCCCeEEecCcc------cCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcC------------HHHHHHHHH
Confidence 23232211 011223334433322 2345699999999883 123566777
Q ss_pred hhcCccCCCCceEEEEEecCCCCCCcHHHHhhcCCceeecCCCHHHHHHHHHHHHhccccC-CccCHHHHHHHccCCcHH
Q 001707 859 AWDGLRSKESQKILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLE-SGFQFNELANATEGYSGS 937 (1023)
Q Consensus 859 ~Ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~V~lPd~eeR~~ILk~~L~~~~l~-~dvdl~~LA~~TeGySga 937 (1023)
.++.. +..+++|.+|+.+..+.+++++|+. .+.+.+++.++...+++..+...++. ++..+..|+..+.| +.+
T Consensus 142 ~LEep----p~~~vfI~~tte~~kL~~tI~SRc~-~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa~~s~G-dlR 215 (563)
T PRK06647 142 TIEEP----PPYIVFIFATTEVHKLPATIKSRCQ-HFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKSTG-SVR 215 (563)
T ss_pred hhccC----CCCEEEEEecCChHHhHHHHHHhce-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 66642 3456777777778889999999994 68899999999999999888766653 34456677777776 677
Q ss_pred HHHHHHHHH
Q 001707 938 DLKNLCIAA 946 (1023)
Q Consensus 938 DL~~L~~~A 946 (1023)
++.+++..+
T Consensus 216 ~alslLdkl 224 (563)
T PRK06647 216 DAYTLFDQV 224 (563)
T ss_pred HHHHHHHHH
Confidence 777776554
No 153
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.30 E-value=5.7e-11 Score=140.77 Aligned_cols=184 Identities=23% Similarity=0.258 Sum_probs=125.2
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc--------------
Q 001707 727 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGAN-------------- 792 (1023)
Q Consensus 727 vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~elg~~-------------- 792 (1023)
.+|++++|.+.+...|+..+.. + +.++.+|||||+|+|||++|+.+|..+.+.
T Consensus 13 ~~f~diiGq~~i~~~L~~~i~~-----------~--~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc 79 (486)
T PRK14953 13 KFFKEVIGQEIVVRILKNAVKL-----------Q--RVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENC 79 (486)
T ss_pred CcHHHccChHHHHHHHHHHHHc-----------C--CCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHH
Confidence 4799999999999999988732 1 234568999999999999999999987531
Q ss_pred ----------EEEEeccccchhhhhhHHHHHHHHHHHHhh----cCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHh
Q 001707 793 ----------FISITGSTLTSKWFGDAEKLTKALFSFASK----LAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMS 858 (1023)
Q Consensus 793 ----------fi~vs~seL~s~~~ge~e~~I~~lF~~A~k----~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~ 858 (1023)
++.++.+.- ..-..++.+...+.. ....|++|||+|.+.. ...+.|+.
T Consensus 80 ~~i~~g~~~d~~eidaas~------~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~------------~a~naLLk 141 (486)
T PRK14953 80 VEIDKGSFPDLIEIDAASN------RGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTK------------EAFNALLK 141 (486)
T ss_pred HHHhcCCCCcEEEEeCccC------CCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCH------------HHHHHHHH
Confidence 222222110 111223444333332 2356999999998731 22456666
Q ss_pred hhcCccCCCCceEEEEEecCCCCCCcHHHHhhcCCceeecCCCHHHHHHHHHHHHhccccC-CccCHHHHHHHccCCcHH
Q 001707 859 AWDGLRSKESQKILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLE-SGFQFNELANATEGYSGS 937 (1023)
Q Consensus 859 ~Ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~V~lPd~eeR~~ILk~~L~~~~l~-~dvdl~~LA~~TeGySga 937 (1023)
.++.. +. .+++|.+|+.++.+.+++.+|+. .+.+.+|+.++...++..++...++. ++..+..|+..+.| +.+
T Consensus 142 ~LEep---p~-~~v~Il~tt~~~kl~~tI~SRc~-~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La~~s~G-~lr 215 (486)
T PRK14953 142 TLEEP---PP-RTIFILCTTEYDKIPPTILSRCQ-RFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASEG-GMR 215 (486)
T ss_pred HHhcC---CC-CeEEEEEECCHHHHHHHHHHhce-EEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 66543 22 34555556667788889999984 78899999999999999998877654 33346677777775 667
Q ss_pred HHHHHHHHHH
Q 001707 938 DLKNLCIAAA 947 (1023)
Q Consensus 938 DL~~L~~~Aa 947 (1023)
++.++++.++
T Consensus 216 ~al~~Ldkl~ 225 (486)
T PRK14953 216 DAASLLDQAS 225 (486)
T ss_pred HHHHHHHHHH
Confidence 7766666554
No 154
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.30 E-value=8.1e-11 Score=125.98 Aligned_cols=198 Identities=22% Similarity=0.298 Sum_probs=117.3
Q ss_pred CCccccccc-C--hHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEE
Q 001707 725 IGVRFDDIG-A--LEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEA-----GANFISI 796 (1023)
Q Consensus 725 ~~vtfdDIg-G--le~vk~~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~el-----g~~fi~v 796 (1023)
++.||++++ | .+.+...++.+...+ + .....++||||+|+|||+|.+|+++++ +..++++
T Consensus 3 ~~~tFdnfv~g~~N~~a~~~~~~ia~~~----------~--~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~ 70 (219)
T PF00308_consen 3 PKYTFDNFVVGESNELAYAAAKAIAENP----------G--ERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYL 70 (219)
T ss_dssp TT-SCCCS--TTTTHHHHHHHHHHHHST----------T--TSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEE
T ss_pred CCCccccCCcCCcHHHHHHHHHHHHhcC----------C--CCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceee
Confidence 346788763 3 344455555544321 1 122359999999999999999999875 5778999
Q ss_pred eccccchhhhhhHHHHHHHHHHHHhhcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhcCccCCCCceEEEEEe
Q 001707 797 TGSTLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGA 876 (1023)
Q Consensus 797 s~seL~s~~~ge~e~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~~~~~VlVIaT 876 (1023)
++.++...+..........-|..... ...+|+|||++.+.+.. ....+|...++.+.. ..+.+||++
T Consensus 71 ~~~~f~~~~~~~~~~~~~~~~~~~~~-~~DlL~iDDi~~l~~~~----------~~q~~lf~l~n~~~~--~~k~li~ts 137 (219)
T PF00308_consen 71 SAEEFIREFADALRDGEIEEFKDRLR-SADLLIIDDIQFLAGKQ----------RTQEELFHLFNRLIE--SGKQLILTS 137 (219)
T ss_dssp EHHHHHHHHHHHHHTTSHHHHHHHHC-TSSEEEEETGGGGTTHH----------HHHHHHHHHHHHHHH--TTSEEEEEE
T ss_pred cHHHHHHHHHHHHHcccchhhhhhhh-cCCEEEEecchhhcCch----------HHHHHHHHHHHHHHh--hCCeEEEEe
Confidence 88877665544332211122332222 56899999999985321 112233333333221 234556656
Q ss_pred cCCCCC---CcHHHHhhcCC--ceeecCCCHHHHHHHHHHHHhccccC-CccCHHHHHHHccCCcHHHHHHHHHHHHH
Q 001707 877 TNRPFD---LDDAVIRRLPR--RIYVDLPDAENRMKILRIFLAHESLE-SGFQFNELANATEGYSGSDLKNLCIAAAY 948 (1023)
Q Consensus 877 TN~p~~---Ld~aLlrRFd~--~I~V~lPd~eeR~~ILk~~L~~~~l~-~dvdl~~LA~~TeGySgaDL~~L~~~Aa~ 948 (1023)
...|.. +++.+.+||.. .+.+..|+.+.|.+|++..+...++. ++.-+..|+....+ +.++|..++..-..
T Consensus 138 ~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~l~~~v~~~l~~~~~~-~~r~L~~~l~~l~~ 214 (219)
T PF00308_consen 138 DRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRILQKKAKERGIELPEEVIEYLARRFRR-DVRELEGALNRLDA 214 (219)
T ss_dssp SS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHHHHHHHHTT--S-HHHHHHHHHHTTS-SHHHHHHHHHHHHH
T ss_pred CCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHHHHHHHHhCCCCcHHHHHHHHHhhcC-CHHHHHHHHHHHHH
Confidence 556654 56889999866 66788899999999999998877765 33335667777664 77888777765433
No 155
>PRK06620 hypothetical protein; Validated
Probab=99.28 E-value=1.1e-10 Score=124.48 Aligned_cols=173 Identities=17% Similarity=0.177 Sum_probs=108.4
Q ss_pred CCcccccccCh---HHHHHHHHHHHHcccCCchhhccCCCCCC-CceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccc
Q 001707 725 IGVRFDDIGAL---EDVKKALNELVILPMRRPDLFSRGNLLRP-CKGILLFGPPGTGKTLLAKALATEAGANFISITGST 800 (1023)
Q Consensus 725 ~~vtfdDIgGl---e~vk~~L~e~V~~pL~~pelf~~~gli~p-~~gVLL~GPPGTGKT~LArAIA~elg~~fi~vs~se 800 (1023)
+..+|++++-- ..+...++++... .+ ..| ...++||||||||||+|++++++..+..++. ...
T Consensus 11 ~~~tfd~Fvvg~~N~~a~~~~~~~~~~----------~~-~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~--~~~ 77 (214)
T PRK06620 11 SKYHPDEFIVSSSNDQAYNIIKNWQCG----------FG-VNPYKFTLLIKGPSSSGKTYLTKIWQNLSNAYIIK--DIF 77 (214)
T ss_pred CCCCchhhEecccHHHHHHHHHHHHHc----------cc-cCCCcceEEEECCCCCCHHHHHHHHHhccCCEEcc--hhh
Confidence 34578875433 3445555554321 11 123 2579999999999999999999988764433 000
Q ss_pred cchhhhhhHHHHHHHHHHHHhhcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhcCccCCCCceEEEEEecCCC
Q 001707 801 LTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRP 880 (1023)
Q Consensus 801 L~s~~~ge~e~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~~~~~VlVIaTTN~p 880 (1023)
. ....+ ....+|+|||||.+- ....-.++|.+. +.++.+||+++..|
T Consensus 78 ~-----------~~~~~-----~~~d~lliDdi~~~~--------~~~lf~l~N~~~---------e~g~~ilits~~~p 124 (214)
T PRK06620 78 F-----------NEEIL-----EKYNAFIIEDIENWQ--------EPALLHIFNIIN---------EKQKYLLLTSSDKS 124 (214)
T ss_pred h-----------chhHH-----hcCCEEEEeccccch--------HHHHHHHHHHHH---------hcCCEEEEEcCCCc
Confidence 0 00111 134799999999651 111222222221 23356777777655
Q ss_pred CC--CcHHHHhhcCC--ceeecCCCHHHHHHHHHHHHhccccC-CccCHHHHHHHccCCcHHHHHHHHHH
Q 001707 881 FD--LDDAVIRRLPR--RIYVDLPDAENRMKILRIFLAHESLE-SGFQFNELANATEGYSGSDLKNLCIA 945 (1023)
Q Consensus 881 ~~--Ld~aLlrRFd~--~I~V~lPd~eeR~~ILk~~L~~~~l~-~dvdl~~LA~~TeGySgaDL~~L~~~ 945 (1023)
.. + +++++|+.. .+.+..|+.+.+..+++..+...++. ++..+..|+....| +.+.+.++++.
T Consensus 125 ~~l~l-~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~l~~ev~~~L~~~~~~-d~r~l~~~l~~ 192 (214)
T PRK06620 125 RNFTL-PDLSSRIKSVLSILLNSPDDELIKILIFKHFSISSVTISRQIIDFLLVNLPR-EYSKIIEILEN 192 (214)
T ss_pred cccch-HHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccC-CHHHHHHHHHH
Confidence 54 5 789999864 57788999999999999888765543 44457778887775 66777666654
No 156
>PRK05642 DNA replication initiation factor; Validated
Probab=99.28 E-value=8.8e-11 Score=126.82 Aligned_cols=158 Identities=18% Similarity=0.222 Sum_probs=103.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccchhhhhhHHHHHHHHHHHHhhcCCeEEEeccchhhhhccCC
Q 001707 766 KGILLFGPPGTGKTLLAKALATEA---GANFISITGSTLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGG 842 (1023)
Q Consensus 766 ~gVLL~GPPGTGKT~LArAIA~el---g~~fi~vs~seL~s~~~ge~e~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~ 842 (1023)
..++||||+|+|||+|++|+++++ +..+++++..++.... ..+..... ...+|+|||++.+.+...
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~~--------~~~~~~~~--~~d~LiiDDi~~~~~~~~- 114 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDRG--------PELLDNLE--QYELVCLDDLDVIAGKAD- 114 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhhh--------HHHHHhhh--hCCEEEEechhhhcCChH-
Confidence 569999999999999999999865 6778888877665421 11222221 236899999998753321
Q ss_pred CchhHHHHHHHHHHHhhhcCccCCCCceEEEEEecCCCCC---CcHHHHhhcC--CceeecCCCHHHHHHHHHHHHhccc
Q 001707 843 AFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPFD---LDDAVIRRLP--RRIYVDLPDAENRMKILRIFLAHES 917 (1023)
Q Consensus 843 ~~~~e~~~ril~~LL~~Ldgl~~~~~~~VlVIaTTN~p~~---Ld~aLlrRFd--~~I~V~lPd~eeR~~ILk~~L~~~~ 917 (1023)
.. .+|...++... +.++.+||+++..|.. +.+.+++||. ..+.+..|+.++|..+++..+...+
T Consensus 115 --~~-------~~Lf~l~n~~~--~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka~~~~ 183 (234)
T PRK05642 115 --WE-------EALFHLFNRLR--DSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLRASRRG 183 (234)
T ss_pred --HH-------HHHHHHHHHHH--hcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcC
Confidence 11 12333333322 2335677777665544 3689999995 4556788999999999996665544
Q ss_pred cC-CccCHHHHHHHccCCcHHHHHHHHHHH
Q 001707 918 LE-SGFQFNELANATEGYSGSDLKNLCIAA 946 (1023)
Q Consensus 918 l~-~dvdl~~LA~~TeGySgaDL~~L~~~A 946 (1023)
+. ++..+..|++...+ +.+.+..+++.-
T Consensus 184 ~~l~~ev~~~L~~~~~~-d~r~l~~~l~~l 212 (234)
T PRK05642 184 LHLTDEVGHFILTRGTR-SMSALFDLLERL 212 (234)
T ss_pred CCCCHHHHHHHHHhcCC-CHHHHHHHHHHH
Confidence 42 34446777777775 667777666543
No 157
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.28 E-value=1.3e-10 Score=129.12 Aligned_cols=183 Identities=26% Similarity=0.300 Sum_probs=120.8
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC-----CcEEEEecccc
Q 001707 727 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAG-----ANFISITGSTL 801 (1023)
Q Consensus 727 vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~elg-----~~fi~vs~seL 801 (1023)
.+|+|+.|.+.+++.|..++.. +. .+++||+||||||||++++++++++. .+++.+++++.
T Consensus 14 ~~~~~~~g~~~~~~~l~~~i~~----------~~----~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~~ 79 (319)
T PRK00440 14 RTLDEIVGQEEIVERLKSYVKE----------KN----MPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNASDE 79 (319)
T ss_pred CcHHHhcCcHHHHHHHHHHHhC----------CC----CCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEeccccc
Confidence 5799999999999999988732 11 12589999999999999999999872 34565554432
Q ss_pred chhhhhhHHHHHH-HHHHHHhh-----cCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhcCccCCCCceEEEEE
Q 001707 802 TSKWFGDAEKLTK-ALFSFASK-----LAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILG 875 (1023)
Q Consensus 802 ~s~~~ge~e~~I~-~lF~~A~k-----~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~~~~~VlVIa 875 (1023)
.+. ..+. .+...+.. ..+.+|+|||+|.+... . ...|+..++... ....+|.
T Consensus 80 ~~~------~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~~--------~----~~~L~~~le~~~----~~~~lIl 137 (319)
T PRK00440 80 RGI------DVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTSD--------A----QQALRRTMEMYS----QNTRFIL 137 (319)
T ss_pred cch------HHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCHH--------H----HHHHHHHHhcCC----CCCeEEE
Confidence 210 1111 11122221 23569999999988321 1 223444444332 2344556
Q ss_pred ecCCCCCCcHHHHhhcCCceeecCCCHHHHHHHHHHHHhccccC-CccCHHHHHHHccCCcHHHHHHHHHHHH
Q 001707 876 ATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLE-SGFQFNELANATEGYSGSDLKNLCIAAA 947 (1023)
Q Consensus 876 TTN~p~~Ld~aLlrRFd~~I~V~lPd~eeR~~ILk~~L~~~~l~-~dvdl~~LA~~TeGySgaDL~~L~~~Aa 947 (1023)
++|.+..+.+++.+|+. .+.+++|+.++...+++.++...++. ++..+..|+..+.| +.+.+.+.++.++
T Consensus 138 ~~~~~~~l~~~l~sr~~-~~~~~~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~~~~~g-d~r~~~~~l~~~~ 208 (319)
T PRK00440 138 SCNYSSKIIDPIQSRCA-VFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYVSEG-DMRKAINALQAAA 208 (319)
T ss_pred EeCCccccchhHHHHhh-eeeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 77777888888999985 68999999999999999998876653 44457788877765 4444444444433
No 158
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.28 E-value=9.7e-11 Score=139.44 Aligned_cols=187 Identities=21% Similarity=0.225 Sum_probs=131.3
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC---------------
Q 001707 727 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGA--------------- 791 (1023)
Q Consensus 727 vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~elg~--------------- 791 (1023)
.+|++++|.+.+++.|...+.. + +.++.+|||||+|+|||++|+++|+.+..
T Consensus 11 ~~fdeiiGqe~v~~~L~~~I~~-----------g--rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C 77 (535)
T PRK08451 11 KHFDELIGQESVSKTLSLALDN-----------N--RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQC 77 (535)
T ss_pred CCHHHccCcHHHHHHHHHHHHc-----------C--CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHH
Confidence 5799999999999999988732 1 23456799999999999999999998732
Q ss_pred ---------cEEEEeccccchhhhhhHHHHHHHHHHHHhhc----CCeEEEeccchhhhhccCCCchhHHHHHHHHHHHh
Q 001707 792 ---------NFISITGSTLTSKWFGDAEKLTKALFSFASKL----APVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMS 858 (1023)
Q Consensus 792 ---------~fi~vs~seL~s~~~ge~e~~I~~lF~~A~k~----~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~ 858 (1023)
.++.++...-. .-..++.+...+... ..-|++|||+|.|. ....+.|+.
T Consensus 78 ~~~~~~~h~dv~eldaas~~------gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt------------~~A~NALLK 139 (535)
T PRK08451 78 QSALENRHIDIIEMDAASNR------GIDDIRELIEQTKYKPSMARFKIFIIDEVHMLT------------KEAFNALLK 139 (535)
T ss_pred HHHhhcCCCeEEEecccccc------CHHHHHHHHHHHhhCcccCCeEEEEEECcccCC------------HHHHHHHHH
Confidence 13333322110 112344443332211 23599999999883 223456666
Q ss_pred hhcCccCCCCceEEEEEecCCCCCCcHHHHhhcCCceeecCCCHHHHHHHHHHHHhccccC-CccCHHHHHHHccCCcHH
Q 001707 859 AWDGLRSKESQKILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLE-SGFQFNELANATEGYSGS 937 (1023)
Q Consensus 859 ~Ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~V~lPd~eeR~~ILk~~L~~~~l~-~dvdl~~LA~~TeGySga 937 (1023)
.|+.. +..+.+|.+|+.+..+.+++++|+ ..+.|.+++.++....++..+...++. ++..+..|+..+.| +.+
T Consensus 140 ~LEEp----p~~t~FIL~ttd~~kL~~tI~SRc-~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~~s~G-dlR 213 (535)
T PRK08451 140 TLEEP----PSYVKFILATTDPLKLPATILSRT-QHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILARSGNG-SLR 213 (535)
T ss_pred HHhhc----CCceEEEEEECChhhCchHHHhhc-eeEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-cHH
Confidence 66653 234566666777899999999997 588999999999999999888877654 34457778887776 888
Q ss_pred HHHHHHHHHHHHH
Q 001707 938 DLKNLCIAAAYRP 950 (1023)
Q Consensus 938 DL~~L~~~Aa~~A 950 (1023)
++.+++..|+..+
T Consensus 214 ~alnlLdqai~~~ 226 (535)
T PRK08451 214 DTLTLLDQAIIYC 226 (535)
T ss_pred HHHHHHHHHHHhc
Confidence 8888887766543
No 159
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.27 E-value=6.4e-11 Score=129.88 Aligned_cols=173 Identities=20% Similarity=0.271 Sum_probs=119.3
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc------EEEEeccc
Q 001707 727 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGAN------FISITGST 800 (1023)
Q Consensus 727 vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~elg~~------fi~vs~se 800 (1023)
.+|+++.|++.+.+.|+..+.. ....++|||||||||||+.|+++|+++..+ +...+.++
T Consensus 33 kt~de~~gQe~vV~~L~~a~~~--------------~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSd 98 (346)
T KOG0989|consen 33 KTFDELAGQEHVVQVLKNALLR--------------RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASD 98 (346)
T ss_pred CcHHhhcchHHHHHHHHHHHhh--------------cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccc
Confidence 5899999999999999998732 122479999999999999999999999652 23334444
Q ss_pred cchhhhhhHHHHHHHHHHHHh---------hcCC-eEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhcCccCCCCce
Q 001707 801 LTSKWFGDAEKLTKALFSFAS---------KLAP-VIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQK 870 (1023)
Q Consensus 801 L~s~~~ge~e~~I~~lF~~A~---------k~~P-sIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~~~~~ 870 (1023)
..+..+.. ..+ +-|.... -.+| -||+|||.|.|.... .++|...|+. ..+.
T Consensus 99 erGisvvr--~Ki-k~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsda------------q~aLrr~mE~----~s~~ 159 (346)
T KOG0989|consen 99 ERGISVVR--EKI-KNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDA------------QAALRRTMED----FSRT 159 (346)
T ss_pred cccccchh--hhh-cCHHHHhhccccccCCCCCcceEEEEechhhhhHHH------------HHHHHHHHhc----cccc
Confidence 33322111 111 1122211 1122 699999999985322 2344444444 2456
Q ss_pred EEEEEecCCCCCCcHHHHhhcCCceeecCCCHHHHHHHHHHHHhccccCC-ccCHHHHHHHccC
Q 001707 871 ILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLES-GFQFNELANATEG 933 (1023)
Q Consensus 871 VlVIaTTN~p~~Ld~aLlrRFd~~I~V~lPd~eeR~~ILk~~L~~~~l~~-dvdl~~LA~~TeG 933 (1023)
+.+|..||.++.|...+.+|+. .+.|+....+.....|+.+..++++.- +-.+..|+..++|
T Consensus 160 trFiLIcnylsrii~pi~SRC~-KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~G 222 (346)
T KOG0989|consen 160 TRFILICNYLSRIIRPLVSRCQ-KFRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKISDG 222 (346)
T ss_pred eEEEEEcCChhhCChHHHhhHH-HhcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC
Confidence 8889999999999999999994 678888888888888888888887753 3336677777666
No 160
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.27 E-value=9.8e-11 Score=135.73 Aligned_cols=184 Identities=17% Similarity=0.201 Sum_probs=123.4
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc--------------
Q 001707 727 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGAN-------------- 792 (1023)
Q Consensus 727 vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~elg~~-------------- 792 (1023)
.+|++|+|.+.+++.|+..+.. + +.++.+||+||||+|||++|+++|+.+.+.
T Consensus 13 ~~~~eiiGq~~~~~~L~~~~~~-----------~--~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~ 79 (397)
T PRK14955 13 KKFADITAQEHITRTIQNSLRM-----------G--RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTE 79 (397)
T ss_pred CcHhhccChHHHHHHHHHHHHh-----------C--CcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCC
Confidence 4799999999999999887742 1 345679999999999999999999998652
Q ss_pred ------------------EEEEeccccchhhhhhHHHHHHHHHHHHhh----cCCeEEEeccchhhhhccCCCchhHHHH
Q 001707 793 ------------------FISITGSTLTSKWFGDAEKLTKALFSFASK----LAPVIIFVDEVDSLLGARGGAFEHEATR 850 (1023)
Q Consensus 793 ------------------fi~vs~seL~s~~~ge~e~~I~~lF~~A~k----~~PsIIfIDEID~L~~~r~~~~~~e~~~ 850 (1023)
++.++.... .....++.+...+.. ....||||||+|.+..
T Consensus 80 ~c~~c~~c~~~~~~~~~n~~~~~~~~~------~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~------------ 141 (397)
T PRK14955 80 PCGECESCRDFDAGTSLNISEFDAASN------NSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSI------------ 141 (397)
T ss_pred CCCCCHHHHHHhcCCCCCeEeeccccc------CCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCH------------
Confidence 222221110 112334444333321 1236999999999842
Q ss_pred HHHHHHHhhhcCccCCCCceEEEEEecCCCCCCcHHHHhhcCCceeecCCCHHHHHHHHHHHHhccccC-CccCHHHHHH
Q 001707 851 RMRNEFMSAWDGLRSKESQKILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLE-SGFQFNELAN 929 (1023)
Q Consensus 851 ril~~LL~~Ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~V~lPd~eeR~~ILk~~L~~~~l~-~dvdl~~LA~ 929 (1023)
...+.|+..++.. ....++|.+|+.+..+.+.+.+|+ ..+.+.+++.++...+++..+...++. ++..+..|+.
T Consensus 142 ~~~~~LLk~LEep----~~~t~~Il~t~~~~kl~~tl~sR~-~~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~al~~l~~ 216 (397)
T PRK14955 142 AAFNAFLKTLEEP----PPHAIFIFATTELHKIPATIASRC-QRFNFKRIPLEEIQQQLQGICEAEGISVDADALQLIGR 216 (397)
T ss_pred HHHHHHHHHHhcC----CCCeEEEEEeCChHHhHHHHHHHH-HHhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 1234555555432 234555556666778888999888 478899999999998888888766542 4445677777
Q ss_pred HccCCcHHHHHHHHHHHH
Q 001707 930 ATEGYSGSDLKNLCIAAA 947 (1023)
Q Consensus 930 ~TeGySgaDL~~L~~~Aa 947 (1023)
.+.| +.+.+.+.++.+.
T Consensus 217 ~s~g-~lr~a~~~L~kl~ 233 (397)
T PRK14955 217 KAQG-SMRDAQSILDQVI 233 (397)
T ss_pred HcCC-CHHHHHHHHHHHH
Confidence 7776 6666666665543
No 161
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.26 E-value=1.3e-10 Score=127.56 Aligned_cols=134 Identities=25% Similarity=0.348 Sum_probs=89.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccc------cchhhhhhHHHH-HHH-------------------HHHH
Q 001707 766 KGILLFGPPGTGKTLLAKALATEAGANFISITGST------LTSKWFGDAEKL-TKA-------------------LFSF 819 (1023)
Q Consensus 766 ~gVLL~GPPGTGKT~LArAIA~elg~~fi~vs~se------L~s~~~ge~e~~-I~~-------------------lF~~ 819 (1023)
.+|||+||||||||++|+++|..+|.+|+.+++.. +++.+.+..... +.. .+..
T Consensus 22 ~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~ 101 (262)
T TIGR02640 22 YPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLTL 101 (262)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchHHH
Confidence 46999999999999999999999999999997754 233332211111 111 1112
Q ss_pred HhhcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhcCcc--C----------CCCceEEEEEecCCCC-----C
Q 001707 820 ASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLR--S----------KESQKILILGATNRPF-----D 882 (1023)
Q Consensus 820 A~k~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~--~----------~~~~~VlVIaTTN~p~-----~ 882 (1023)
|.+ .+.+|+||||+.+- .+ +.+.|+..|+.-. . .....+.||+|+|... .
T Consensus 102 A~~-~g~~lllDEi~r~~--------~~----~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~~~ 168 (262)
T TIGR02640 102 AVR-EGFTLVYDEFTRSK--------PE----TNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGVHE 168 (262)
T ss_pred HHH-cCCEEEEcchhhCC--------HH----HHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccccceec
Confidence 222 35799999999863 12 2233333333210 0 0123567999999763 4
Q ss_pred CcHHHHhhcCCceeecCCCHHHHHHHHHHHH
Q 001707 883 LDDAVIRRLPRRIYVDLPDAENRMKILRIFL 913 (1023)
Q Consensus 883 Ld~aLlrRFd~~I~V~lPd~eeR~~ILk~~L 913 (1023)
+++++++|| ..+.++.|+.++..+|++..+
T Consensus 169 l~~aL~~R~-~~i~i~~P~~~~e~~Il~~~~ 198 (262)
T TIGR02640 169 TQDALLDRL-ITIFMDYPDIDTETAILRAKT 198 (262)
T ss_pred ccHHHHhhc-EEEECCCCCHHHHHHHHHHhh
Confidence 789999999 578999999999999998775
No 162
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.25 E-value=1.8e-10 Score=139.35 Aligned_cols=190 Identities=21% Similarity=0.151 Sum_probs=129.4
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe---------
Q 001707 727 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISIT--------- 797 (1023)
Q Consensus 727 vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~elg~~fi~vs--------- 797 (1023)
.+|+||+|++.++..|...+.. + +.++.+||+||+|+|||++|+++|+.+.+......
T Consensus 21 ~~f~dliGq~~~v~~L~~~~~~----------g---ri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg 87 (598)
T PRK09111 21 QTFDDLIGQEAMVRTLTNAFET----------G---RIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCG 87 (598)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc----------C---CCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCc
Confidence 5799999999999999987742 2 34568999999999999999999999865321110
Q ss_pred ----c--------cccchhh--hhhHHHHHHHHHHHHhhc----CCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhh
Q 001707 798 ----G--------STLTSKW--FGDAEKLTKALFSFASKL----APVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSA 859 (1023)
Q Consensus 798 ----~--------seL~s~~--~ge~e~~I~~lF~~A~k~----~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~ 859 (1023)
| .+++... ....-..++.+...+... ...||||||+|.|.. ...+.|+..
T Consensus 88 ~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~------------~a~naLLKt 155 (598)
T PRK09111 88 VGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLST------------AAFNALLKT 155 (598)
T ss_pred ccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCH------------HHHHHHHHH
Confidence 0 0010000 001123355555554332 346999999999831 234566666
Q ss_pred hcCccCCCCceEEEEEecCCCCCCcHHHHhhcCCceeecCCCHHHHHHHHHHHHhccccC-CccCHHHHHHHccCCcHHH
Q 001707 860 WDGLRSKESQKILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLE-SGFQFNELANATEGYSGSD 938 (1023)
Q Consensus 860 Ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~V~lPd~eeR~~ILk~~L~~~~l~-~dvdl~~LA~~TeGySgaD 938 (1023)
|+.. ...+.+|.+|+.+..+.+.+++|+ ..+.|..|+.++...+++..+...++. .+..+..|+..+.| +.++
T Consensus 156 LEeP----p~~~~fIl~tte~~kll~tI~SRc-q~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~lIa~~a~G-dlr~ 229 (598)
T PRK09111 156 LEEP----PPHVKFIFATTEIRKVPVTVLSRC-QRFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIARAAEG-SVRD 229 (598)
T ss_pred HHhC----CCCeEEEEEeCChhhhhHHHHhhe-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHH
Confidence 6553 234666666777778888899999 578999999999999999988877654 33446667777765 6777
Q ss_pred HHHHHHHHH
Q 001707 939 LKNLCIAAA 947 (1023)
Q Consensus 939 L~~L~~~Aa 947 (1023)
+.+++..++
T Consensus 230 al~~Ldkli 238 (598)
T PRK09111 230 GLSLLDQAI 238 (598)
T ss_pred HHHHHHHHH
Confidence 777766553
No 163
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.25 E-value=1.6e-10 Score=110.74 Aligned_cols=122 Identities=40% Similarity=0.635 Sum_probs=81.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccchhhhhhHHHH---HHHHHHHHhhcCCeEEEeccchhhhh
Q 001707 765 CKGILLFGPPGTGKTLLAKALATEA---GANFISITGSTLTSKWFGDAEKL---TKALFSFASKLAPVIIFVDEVDSLLG 838 (1023)
Q Consensus 765 ~~gVLL~GPPGTGKT~LArAIA~el---g~~fi~vs~seL~s~~~ge~e~~---I~~lF~~A~k~~PsIIfIDEID~L~~ 838 (1023)
..+++|+||||||||+++++++..+ +.+++.+++.............. ....+..+....+.+|+|||++.+..
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lilDe~~~~~~ 98 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSLSR 98 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhccCCCeEEEEeChhhhhH
Confidence 3579999999999999999999998 88999998877665433322111 12233444556789999999998721
Q ss_pred ccCCCchhHHHHHHHHHHHhhhcCccC--CCCceEEEEEecCCCC--CCcHHHHhhcCCceeec
Q 001707 839 ARGGAFEHEATRRMRNEFMSAWDGLRS--KESQKILILGATNRPF--DLDDAVIRRLPRRIYVD 898 (1023)
Q Consensus 839 ~r~~~~~~e~~~ril~~LL~~Ldgl~~--~~~~~VlVIaTTN~p~--~Ld~aLlrRFd~~I~V~ 898 (1023)
... ..++..+..... .....+.+|++++... .+++.+.+||+..+.++
T Consensus 99 --------~~~----~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~r~~~~i~~~ 150 (151)
T cd00009 99 --------GAQ----NALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDRALYDRLDIRIVIP 150 (151)
T ss_pred --------HHH----HHHHHHHHhcCceeccCCCeEEEEecCccccCCcChhHHhhhccEeecC
Confidence 111 122222222211 1134688888888777 78889999998666654
No 164
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.24 E-value=1.8e-10 Score=140.02 Aligned_cols=181 Identities=23% Similarity=0.255 Sum_probs=125.5
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc--------------
Q 001707 727 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGAN-------------- 792 (1023)
Q Consensus 727 vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~elg~~-------------- 792 (1023)
.+|++++|.+.+++.|..++.. . +-.+++||+||+|+|||++|+++|+.+.+.
T Consensus 13 ~~f~~liGq~~i~~~L~~~l~~----------~---rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~ 79 (620)
T PRK14948 13 QRFDELVGQEAIATTLKNALIS----------N---RIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCE 79 (620)
T ss_pred CcHhhccChHHHHHHHHHHHHc----------C---CCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccH
Confidence 5799999999999999988743 1 123579999999999999999999998652
Q ss_pred ------------EEEEeccccchhhhhhHHHHHHHHHHHHhhc----CCeEEEeccchhhhhccCCCchhHHHHHHHHHH
Q 001707 793 ------------FISITGSTLTSKWFGDAEKLTKALFSFASKL----APVIIFVDEVDSLLGARGGAFEHEATRRMRNEF 856 (1023)
Q Consensus 793 ------------fi~vs~seL~s~~~ge~e~~I~~lF~~A~k~----~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~L 856 (1023)
++.++.. .......++.+...+... ...||||||+|.|. ....+.|
T Consensus 80 ~C~~i~~g~h~D~~ei~~~------~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt------------~~a~naL 141 (620)
T PRK14948 80 LCRAIAAGNALDVIEIDAA------SNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLS------------TAAFNAL 141 (620)
T ss_pred HHHHHhcCCCccEEEEecc------ccCCHHHHHHHHHHHhhChhcCCceEEEEECccccC------------HHHHHHH
Confidence 2222221 112234556666555432 34699999999883 1234667
Q ss_pred HhhhcCccCCCCceEEEEEecCCCCCCcHHHHhhcCCceeecCCCHHHHHHHHHHHHhccccC-CccCHHHHHHHccCCc
Q 001707 857 MSAWDGLRSKESQKILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLE-SGFQFNELANATEGYS 935 (1023)
Q Consensus 857 L~~Ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~V~lPd~eeR~~ILk~~L~~~~l~-~dvdl~~LA~~TeGyS 935 (1023)
+..|+.. ...+++|++|+.+..+.+.+++|+ ..+.|..++.++....+..++.+.++. ....+..|+..+.| .
T Consensus 142 LK~LEeP----p~~tvfIL~t~~~~~llpTIrSRc-~~~~f~~l~~~ei~~~L~~ia~kegi~is~~al~~La~~s~G-~ 215 (620)
T PRK14948 142 LKTLEEP----PPRVVFVLATTDPQRVLPTIISRC-QRFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQRSQG-G 215 (620)
T ss_pred HHHHhcC----CcCeEEEEEeCChhhhhHHHHhhe-eEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC-C
Confidence 7777642 335667777777888889999998 578888898888888888877765543 23346777777776 3
Q ss_pred HHHHHHHHH
Q 001707 936 GSDLKNLCI 944 (1023)
Q Consensus 936 gaDL~~L~~ 944 (1023)
.+++.++++
T Consensus 216 lr~A~~lLe 224 (620)
T PRK14948 216 LRDAESLLD 224 (620)
T ss_pred HHHHHHHHH
Confidence 455555544
No 165
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.24 E-value=1e-10 Score=138.05 Aligned_cols=193 Identities=22% Similarity=0.232 Sum_probs=141.4
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcE-------EEE-ec
Q 001707 727 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANF-------ISI-TG 798 (1023)
Q Consensus 727 vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~elg~~f-------i~v-s~ 798 (1023)
.+|+|+.|++.+...|...+.. -+-.++.||.||.|||||++||.+|+.+++.- ..+ .|
T Consensus 13 ~~F~evvGQe~v~~~L~nal~~-------------~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~C 79 (515)
T COG2812 13 KTFDDVVGQEHVVKTLSNALEN-------------GRIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISC 79 (515)
T ss_pred ccHHHhcccHHHHHHHHHHHHh-------------CcchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhh
Confidence 5799999999999999998854 13346799999999999999999999986531 111 11
Q ss_pred cccchh-h---------hhhHHHHHHHHHHHHh----hcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhcCcc
Q 001707 799 STLTSK-W---------FGDAEKLTKALFSFAS----KLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLR 864 (1023)
Q Consensus 799 seL~s~-~---------~ge~e~~I~~lF~~A~----k~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~ 864 (1023)
-.+..+ + ....-..++.+-+.+. ....-|.+|||++.|. ....|.||..++.
T Consensus 80 k~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS------------~~afNALLKTLEE-- 145 (515)
T COG2812 80 KEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLS------------KQAFNALLKTLEE-- 145 (515)
T ss_pred HhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhh------------HHHHHHHhccccc--
Confidence 111110 0 0012233444444442 3345699999999873 4456777777655
Q ss_pred CCCCceEEEEEecCCCCCCcHHHHhhcCCceeecCCCHHHHHHHHHHHHhccccCCc-cCHHHHHHHccCCcHHHHHHHH
Q 001707 865 SKESQKILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLESG-FQFNELANATEGYSGSDLKNLC 943 (1023)
Q Consensus 865 ~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~V~lPd~eeR~~ILk~~L~~~~l~~d-vdl~~LA~~TeGySgaDL~~L~ 943 (1023)
++..|.+|.+|..+..++..+++|+ ..+.+..-+.++....|..++.++.+..+ ..+..+|+..+| +.+|...+.
T Consensus 146 --PP~hV~FIlATTe~~Kip~TIlSRc-q~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~G-s~RDalslL 221 (515)
T COG2812 146 --PPSHVKFILATTEPQKIPNTILSRC-QRFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEG-SLRDALSLL 221 (515)
T ss_pred --CccCeEEEEecCCcCcCchhhhhcc-ccccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcCC-ChhhHHHHH
Confidence 3457999999999999999999999 57788889999999999999998887644 447778888887 889999998
Q ss_pred HHHHHHH
Q 001707 944 IAAAYRP 950 (1023)
Q Consensus 944 ~~Aa~~A 950 (1023)
..|...+
T Consensus 222 Dq~i~~~ 228 (515)
T COG2812 222 DQAIAFG 228 (515)
T ss_pred HHHHHcc
Confidence 8877654
No 166
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.22 E-value=3.5e-10 Score=137.77 Aligned_cols=224 Identities=19% Similarity=0.225 Sum_probs=131.9
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEE
Q 001707 727 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEA----------GANFISI 796 (1023)
Q Consensus 727 vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~el----------g~~fi~v 796 (1023)
.+|++++|.+.....+...+.. ..+.+++|+||||||||++|+++++.. +.+|+.+
T Consensus 151 ~~~~~iiGqs~~~~~l~~~ia~--------------~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i 216 (615)
T TIGR02903 151 RAFSEIVGQERAIKALLAKVAS--------------PFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEV 216 (615)
T ss_pred CcHHhceeCcHHHHHHHHHHhc--------------CCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEE
Confidence 5789999999988887665522 113469999999999999999998765 3578999
Q ss_pred eccccch-------hhhhhHH----HHHHHHHHH----------HhhcCCeEEEeccchhhhhccCCCchhHHHHHHHHH
Q 001707 797 TGSTLTS-------KWFGDAE----KLTKALFSF----------ASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNE 855 (1023)
Q Consensus 797 s~seL~s-------~~~ge~e----~~I~~lF~~----------A~k~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~ 855 (1023)
++..+.. .+++... ......+.. .......+|||||++.|... ... .
T Consensus 217 ~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~--------~Q~----~ 284 (615)
T TIGR02903 217 DGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPL--------LQN----K 284 (615)
T ss_pred echhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHH--------HHH----H
Confidence 8876521 1111110 000011110 01223579999999987322 112 2
Q ss_pred HHhhhcCc------------------------cCCCCceEEEEE-ecCCCCCCcHHHHhhcCCceeecCCCHHHHHHHHH
Q 001707 856 FMSAWDGL------------------------RSKESQKILILG-ATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILR 910 (1023)
Q Consensus 856 LL~~Ldgl------------------------~~~~~~~VlVIa-TTN~p~~Ld~aLlrRFd~~I~V~lPd~eeR~~ILk 910 (1023)
|+..++.- .......+++|+ ||+.+..+++++++||. .+.+++++.++...|++
T Consensus 285 Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~-~i~~~pls~edi~~Il~ 363 (615)
T TIGR02903 285 LLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCA-EVFFEPLTPEDIALIVL 363 (615)
T ss_pred HHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHhcee-EEEeCCCCHHHHHHHHH
Confidence 22222110 001122345554 55678889999999995 67888899999999999
Q ss_pred HHHhccccC-CccCHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCcCCCCHHHHHHHHHhh
Q 001707 911 IFLAHESLE-SGFQFNELANATEGYSGSDLKNLCIAAAYRPVQELLEEERKLFIQRGKNDAAPVLRPLKLEDFIQSKAKV 989 (1023)
Q Consensus 911 ~~L~~~~l~-~dvdl~~LA~~TeGySgaDL~~L~~~Aa~~Airr~l~~e~~~~~~~~~~~~~~~~r~Lt~eDF~~Al~kv 989 (1023)
..+....+. ++..+..|+..+. .++...+++..+...++.+.... . .......|+.+|+.+++..-
T Consensus 364 ~~a~~~~v~ls~eal~~L~~ys~--~gRraln~L~~~~~~~~~~~~~~-------~----~~~~~~~I~~edv~~~l~~~ 430 (615)
T TIGR02903 364 NAAEKINVHLAAGVEELIARYTI--EGRKAVNILADVYGYALYRAAEA-------G----KENDKVTITQDDVYEVIQIS 430 (615)
T ss_pred HHHHHcCCCCCHHHHHHHHHCCC--cHHHHHHHHHHHHHHHHHHHHHh-------c----cCCCCeeECHHHHHHHhCCC
Confidence 988865432 2223344444332 44544455555543333321100 0 01122579999999998754
Q ss_pred C
Q 001707 990 G 990 (1023)
Q Consensus 990 ~ 990 (1023)
+
T Consensus 431 r 431 (615)
T TIGR02903 431 R 431 (615)
T ss_pred c
Confidence 3
No 167
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.22 E-value=3.7e-10 Score=136.96 Aligned_cols=182 Identities=18% Similarity=0.236 Sum_probs=123.2
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc--------------
Q 001707 727 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGAN-------------- 792 (1023)
Q Consensus 727 vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~elg~~-------------- 792 (1023)
.+|++|+|++.+++.|+..+.. + +-++.+||+||+|+|||++|+++|+.+.+.
T Consensus 13 ~~f~eivGQe~i~~~L~~~i~~-----------~--ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~ 79 (620)
T PRK14954 13 SKFADITAQEHITHTIQNSLRM-----------D--RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTE 79 (620)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc-----------C--CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCC
Confidence 5799999999999999987732 1 334679999999999999999999998652
Q ss_pred ------------------EEEEeccccchhhhhhHHHHHHHHHHHHh----hcCCeEEEeccchhhhhccCCCchhHHHH
Q 001707 793 ------------------FISITGSTLTSKWFGDAEKLTKALFSFAS----KLAPVIIFVDEVDSLLGARGGAFEHEATR 850 (1023)
Q Consensus 793 ------------------fi~vs~seL~s~~~ge~e~~I~~lF~~A~----k~~PsIIfIDEID~L~~~r~~~~~~e~~~ 850 (1023)
|+.++.... .....|+.+...+. ....-|++|||+|.|..
T Consensus 80 ~Cg~C~sC~~~~~g~~~n~~~~d~~s~------~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~------------ 141 (620)
T PRK14954 80 PCGECESCRDFDAGTSLNISEFDAASN------NSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLST------------ 141 (620)
T ss_pred CCccCHHHHHHhccCCCCeEEeccccc------CCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCH------------
Confidence 112221110 01223333333332 12346999999999842
Q ss_pred HHHHHHHhhhcCccCCCCceEEEEEecCCCCCCcHHHHhhcCCceeecCCCHHHHHHHHHHHHhccccC-CccCHHHHHH
Q 001707 851 RMRNEFMSAWDGLRSKESQKILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLE-SGFQFNELAN 929 (1023)
Q Consensus 851 ril~~LL~~Ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~V~lPd~eeR~~ILk~~L~~~~l~-~dvdl~~LA~ 929 (1023)
...+.|+..|+.. ...+++|.+|+.+..|.+.+.+|+ ..+.|..++.++...++...+...++. ++..+..|+.
T Consensus 142 ~a~naLLK~LEeP----p~~tv~IL~t~~~~kLl~TI~SRc-~~vef~~l~~~ei~~~L~~i~~~egi~I~~eal~~La~ 216 (620)
T PRK14954 142 AAFNAFLKTLEEP----PPHAIFIFATTELHKIPATIASRC-QRFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLIAR 216 (620)
T ss_pred HHHHHHHHHHhCC----CCCeEEEEEeCChhhhhHHHHhhc-eEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 1245677666553 223555555566788888999998 588999999999998888888766542 4455777888
Q ss_pred HccCCcHHHHHHHHHH
Q 001707 930 ATEGYSGSDLKNLCIA 945 (1023)
Q Consensus 930 ~TeGySgaDL~~L~~~ 945 (1023)
.+.| +.+++.+.++.
T Consensus 217 ~s~G-dlr~al~eLeK 231 (620)
T PRK14954 217 KAQG-SMRDAQSILDQ 231 (620)
T ss_pred HhCC-CHHHHHHHHHH
Confidence 7776 55555554443
No 168
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.20 E-value=4.2e-10 Score=136.50 Aligned_cols=182 Identities=21% Similarity=0.270 Sum_probs=122.9
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc--------------
Q 001707 727 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGAN-------------- 792 (1023)
Q Consensus 727 vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~elg~~-------------- 792 (1023)
.+|++|+|++.+++.|+..+.. + +.++.+||+||+|+|||++|+++|+.+.+.
T Consensus 13 ~~~~eiiGq~~~~~~L~~~i~~----------~---~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~ 79 (585)
T PRK14950 13 QTFAELVGQEHVVQTLRNAIAE----------G---RVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEM 79 (585)
T ss_pred CCHHHhcCCHHHHHHHHHHHHh----------C---CCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHH
Confidence 5799999999999999887743 1 234568999999999999999999988532
Q ss_pred -----------EEEEeccccchhhhhhHHHHHHHHHHHHh----hcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHH
Q 001707 793 -----------FISITGSTLTSKWFGDAEKLTKALFSFAS----KLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFM 857 (1023)
Q Consensus 793 -----------fi~vs~seL~s~~~ge~e~~I~~lF~~A~----k~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL 857 (1023)
++.++..... .-..++.+...+. .....||||||+|.|.. ...+.|+
T Consensus 80 c~~i~~~~~~d~~~i~~~~~~------~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~------------~a~naLL 141 (585)
T PRK14950 80 CRAIAEGSAVDVIEMDAASHT------SVDDAREIIERVQFRPALARYKVYIIDEVHMLST------------AAFNALL 141 (585)
T ss_pred HHHHhcCCCCeEEEEeccccC------CHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCH------------HHHHHHH
Confidence 2222221110 1122333332222 12346999999998831 2245666
Q ss_pred hhhcCccCCCCceEEEEEecCCCCCCcHHHHhhcCCceeecCCCHHHHHHHHHHHHhccccC-CccCHHHHHHHccCCcH
Q 001707 858 SAWDGLRSKESQKILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLE-SGFQFNELANATEGYSG 936 (1023)
Q Consensus 858 ~~Ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~V~lPd~eeR~~ILk~~L~~~~l~-~dvdl~~LA~~TeGySg 936 (1023)
..++.. ...+++|.+++..+.+.+.+.+|+ ..+.|..++..+...++...+...++. ++..+..|+..+.| +.
T Consensus 142 k~LEep----p~~tv~Il~t~~~~kll~tI~SR~-~~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La~~s~G-dl 215 (585)
T PRK14950 142 KTLEEP----PPHAIFILATTEVHKVPATILSRC-QRFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAATG-SM 215 (585)
T ss_pred HHHhcC----CCCeEEEEEeCChhhhhHHHHhcc-ceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 666553 234566666677777888898898 468899999999999999888776643 33346677777776 66
Q ss_pred HHHHHHHHH
Q 001707 937 SDLKNLCIA 945 (1023)
Q Consensus 937 aDL~~L~~~ 945 (1023)
+++.++++.
T Consensus 216 r~al~~Lek 224 (585)
T PRK14950 216 RDAENLLQQ 224 (585)
T ss_pred HHHHHHHHH
Confidence 666666654
No 169
>PRK09087 hypothetical protein; Validated
Probab=99.14 E-value=1.8e-09 Score=116.32 Aligned_cols=172 Identities=15% Similarity=0.110 Sum_probs=107.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccchhhhhhHHHHHHHHHHHHhhcCCeEEEeccchhhhhccCCCch
Q 001707 766 KGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFE 845 (1023)
Q Consensus 766 ~gVLL~GPPGTGKT~LArAIA~elg~~fi~vs~seL~s~~~ge~e~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~ 845 (1023)
+.++|+||+|+|||+|+++++...++.++.. ..+.... +.... ..+|+|||++.+.. .
T Consensus 45 ~~l~l~G~~GsGKThLl~~~~~~~~~~~i~~--~~~~~~~-----------~~~~~---~~~l~iDDi~~~~~------~ 102 (226)
T PRK09087 45 PVVVLAGPVGSGKTHLASIWREKSDALLIHP--NEIGSDA-----------ANAAA---EGPVLIEDIDAGGF------D 102 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhcCCEEecH--HHcchHH-----------HHhhh---cCeEEEECCCCCCC------C
Confidence 3599999999999999999999877664443 2221111 11111 15889999997621 1
Q ss_pred hHHHHHHHHHHHhhhcCccCCCCceEEEEEecCCCCC---CcHHHHhhcC--CceeecCCCHHHHHHHHHHHHhccccC-
Q 001707 846 HEATRRMRNEFMSAWDGLRSKESQKILILGATNRPFD---LDDAVIRRLP--RRIYVDLPDAENRMKILRIFLAHESLE- 919 (1023)
Q Consensus 846 ~e~~~ril~~LL~~Ldgl~~~~~~~VlVIaTTN~p~~---Ld~aLlrRFd--~~I~V~lPd~eeR~~ILk~~L~~~~l~- 919 (1023)
.+..-.+++.+. +..+.+||+++..|.. ..+.+++||. ..+.+..|+.+.|..|++..+....+.
T Consensus 103 ~~~lf~l~n~~~---------~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~~l 173 (226)
T PRK09087 103 ETGLFHLINSVR---------QAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFADRQLYV 173 (226)
T ss_pred HHHHHHHHHHHH---------hCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHHHHcCCCC
Confidence 222222222222 2234566666655543 3578999985 567888999999999999999876553
Q ss_pred CccCHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCcCCCCHHHHHHHHHhh
Q 001707 920 SGFQFNELANATEGYSGSDLKNLCIAAAYRPVQELLEEERKLFIQRGKNDAAPVLRPLKLEDFIQSKAKV 989 (1023)
Q Consensus 920 ~dvdl~~LA~~TeGySgaDL~~L~~~Aa~~Airr~l~~e~~~~~~~~~~~~~~~~r~Lt~eDF~~Al~kv 989 (1023)
++..+..|++...+ +.+.+..++......++. ..++||...++++++.+
T Consensus 174 ~~ev~~~La~~~~r-~~~~l~~~l~~L~~~~~~--------------------~~~~it~~~~~~~l~~~ 222 (226)
T PRK09087 174 DPHVVYYLVSRMER-SLFAAQTIVDRLDRLALE--------------------RKSRITRALAAEVLNEM 222 (226)
T ss_pred CHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHH--------------------hCCCCCHHHHHHHHHhh
Confidence 44457778887774 334444333332222111 12578999888888765
No 170
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.13 E-value=1.5e-09 Score=124.99 Aligned_cols=172 Identities=22% Similarity=0.312 Sum_probs=118.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEeccccchhhhhhHHHHHHHHHHHHhhcCCeEEEeccchhhhhc
Q 001707 765 CKGILLFGPPGTGKTLLAKALATEA-----GANFISITGSTLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGA 839 (1023)
Q Consensus 765 ~~gVLL~GPPGTGKT~LArAIA~el-----g~~fi~vs~seL~s~~~ge~e~~I~~lF~~A~k~~PsIIfIDEID~L~~~ 839 (1023)
...++||||.|.|||+|++|+++++ +..++.++...++..++......-..-|..-+ +-.+++||||+.+.++
T Consensus 113 ~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v~a~~~~~~~~Fk~~y--~~dlllIDDiq~l~gk 190 (408)
T COG0593 113 YNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFVKALRDNEMEKFKEKY--SLDLLLIDDIQFLAGK 190 (408)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHHHHHHHhhhHHHHHHhh--ccCeeeechHhHhcCC
Confidence 3459999999999999999999988 34578888777776666555444445566655 5689999999999655
Q ss_pred cCCCchhHHHHHHHHHHHhhhcCccCCCCceEEEEEecCCCCC---CcHHHHhhcCCc--eeecCCCHHHHHHHHHHHHh
Q 001707 840 RGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPFD---LDDAVIRRLPRR--IYVDLPDAENRMKILRIFLA 914 (1023)
Q Consensus 840 r~~~~~~e~~~ril~~LL~~Ldgl~~~~~~~VlVIaTTN~p~~---Ld~aLlrRFd~~--I~V~lPd~eeR~~ILk~~L~ 914 (1023)
... .+..-.++|.+. ...+-+|+.+...|.. +.+.|.+||.+- +.+.+|+.+.|..||+....
T Consensus 191 ~~~---qeefFh~FN~l~---------~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka~ 258 (408)
T COG0593 191 ERT---QEEFFHTFNALL---------ENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILRKKAE 258 (408)
T ss_pred hhH---HHHHHHHHHHHH---------hcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHHHHHH
Confidence 321 222223333332 1234555555556655 558999999764 55788999999999999877
Q ss_pred ccccC-CccCHHHHHHHccCCcHHHHHHHHHHHHHHHH
Q 001707 915 HESLE-SGFQFNELANATEGYSGSDLKNLCIAAAYRPV 951 (1023)
Q Consensus 915 ~~~l~-~dvdl~~LA~~TeGySgaDL~~L~~~Aa~~Ai 951 (1023)
..++. ++..+..+|..... +.++|..++......+.
T Consensus 259 ~~~~~i~~ev~~~la~~~~~-nvReLegaL~~l~~~a~ 295 (408)
T COG0593 259 DRGIEIPDEVLEFLAKRLDR-NVRELEGALNRLDAFAL 295 (408)
T ss_pred hcCCCCCHHHHHHHHHHhhc-cHHHHHHHHHHHHHHHH
Confidence 66655 44446777777664 77777777766555544
No 171
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.13 E-value=1.7e-10 Score=126.80 Aligned_cols=179 Identities=24% Similarity=0.360 Sum_probs=117.0
Q ss_pred cCCceeeCHHHHHHHHHHhhhhhhccCCCcccccccchhhhhhhhcccccCCCCCCccccc-ccChHHHHHHHHHHHHcc
Q 001707 671 KGQRLHLPRESLEIAILRLKEQETASRKPTQNLKNLAKDEYESNFVSAVVPPGEIGVRFDD-IGALEDVKKALNELVILP 749 (1023)
Q Consensus 671 ~~~kv~V~~~df~~Al~~l~p~~~~~~~~~~~~~~~~~~efe~~~~~~ii~~~e~~vtfdD-IgGle~vk~~L~e~V~~p 749 (1023)
.+..+.|+.+..+.+.+.+........ ...-...+-.|.++...+|+ ++|++..|+.|.-+|...
T Consensus 15 agp~v~ICdeCielc~~ii~ee~~~~~--------------~~~~~~~lPtP~eik~~Ld~YVIGQe~AKKvLsVAVYNH 80 (408)
T COG1219 15 AGPGVYICDECIELCNDIIREELKEAL--------------DEKELSELPTPKEIKAHLDEYVIGQEQAKKVLSVAVYNH 80 (408)
T ss_pred cCCCceehHHHHHHHHHHHHHhhhhhc--------------cchhhccCCChHHHHHHhhhheecchhhhceeeeeehhH
Confidence 345568899988888776655321110 00001122223344445555 689999998887777655
Q ss_pred cCCchhhcc-CCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccc-hhhhhhH-HHHHHHHHHHH----hh
Q 001707 750 MRRPDLFSR-GNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLT-SKWFGDA-EKLTKALFSFA----SK 822 (1023)
Q Consensus 750 L~~pelf~~-~gli~p~~gVLL~GPPGTGKT~LArAIA~elg~~fi~vs~seL~-s~~~ge~-e~~I~~lF~~A----~k 822 (1023)
..|-..... ..+--...+|||.||.|||||+||+.+|+.+++||..-++..|. .+|+|+. |..+..+...| .+
T Consensus 81 YKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAGYVGEDVENillkLlqaadydV~r 160 (408)
T COG1219 81 YKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVER 160 (408)
T ss_pred HHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhccccchhHHHHHHHHHHHcccCHHH
Confidence 433221111 11111235799999999999999999999999999999999886 4688865 66677776654 34
Q ss_pred cCCeEEEeccchhhhhccCCCc-hhH-HHHHHHHHHHhhhcCc
Q 001707 823 LAPVIIFVDEVDSLLGARGGAF-EHE-ATRRMRNEFMSAWDGL 863 (1023)
Q Consensus 823 ~~PsIIfIDEID~L~~~r~~~~-~~e-~~~ril~~LL~~Ldgl 863 (1023)
....||||||||.+.....++. ... ....+.+.||..+.|.
T Consensus 161 AerGIIyIDEIDKIarkSeN~SITRDVSGEGVQQALLKiiEGT 203 (408)
T COG1219 161 AERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEGT 203 (408)
T ss_pred HhCCeEEEechhhhhccCCCCCcccccCchHHHHHHHHHHcCc
Confidence 4678999999999987664432 122 2345667788888764
No 172
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.12 E-value=1.7e-09 Score=115.47 Aligned_cols=190 Identities=23% Similarity=0.332 Sum_probs=135.5
Q ss_pred CcccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccc
Q 001707 726 GVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEA---GANFISITGSTLT 802 (1023)
Q Consensus 726 ~vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~el---g~~fi~vs~seL~ 802 (1023)
.+.+.+|.|++.+++.|.+-. +.|..+ .|..+|||+|..||||++|++|+-++. |..+|.|+-.++.
T Consensus 56 ~i~L~~l~Gvd~qk~~L~~NT-------~~F~~G---~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~dl~ 125 (287)
T COG2607 56 PIDLADLVGVDRQKEALVRNT-------EQFAEG---LPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKEDLA 125 (287)
T ss_pred CcCHHHHhCchHHHHHHHHHH-------HHHHcC---CcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHHHh
Confidence 478999999999999997654 445544 366899999999999999999999887 6678888766654
Q ss_pred hhhhhhHHHHHHHHHHHHhh-cCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhcCccCCCCceEEEEEecCCCC
Q 001707 803 SKWFGDAEKLTKALFSFASK-LAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPF 881 (1023)
Q Consensus 803 s~~~ge~e~~I~~lF~~A~k-~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~~~~~VlVIaTTN~p~ 881 (1023)
. +-.++...+. ...-|||+|++-- + ....-...|-..|+|-....+.+|+|.||+|+.+
T Consensus 126 ~---------Lp~l~~~Lr~~~~kFIlFcDDLSF---------e--~gd~~yK~LKs~LeG~ve~rP~NVl~YATSNRRH 185 (287)
T COG2607 126 T---------LPDLVELLRARPEKFILFCDDLSF---------E--EGDDAYKALKSALEGGVEGRPANVLFYATSNRRH 185 (287)
T ss_pred h---------HHHHHHHHhcCCceEEEEecCCCC---------C--CCchHHHHHHHHhcCCcccCCCeEEEEEecCCcc
Confidence 3 3334444433 2357999999731 0 0112234566677776666678999999999887
Q ss_pred CCcH----------------------HHHhhcCCceeecCCCHHHHHHHHHHHHhccccCCc---cCH--HHHHHHccCC
Q 001707 882 DLDD----------------------AVIRRLPRRIYVDLPDAENRMKILRIFLAHESLESG---FQF--NELANATEGY 934 (1023)
Q Consensus 882 ~Ld~----------------------aLlrRFd~~I~V~lPd~eeR~~ILk~~L~~~~l~~d---vdl--~~LA~~TeGy 934 (1023)
.|++ .+-.||...+.|.++++++-.+|+..++++.++.-+ .+. .+.|..-.|-
T Consensus 186 Ll~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~~~~e~l~~eAl~WAt~rg~R 265 (287)
T COG2607 186 LLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLDISDEELHAEALQWATTRGGR 265 (287)
T ss_pred cccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCC
Confidence 7662 223399999999999999999999999998877532 112 2334455577
Q ss_pred cHHHHHHHHHH
Q 001707 935 SGSDLKNLCIA 945 (1023)
Q Consensus 935 SgaDL~~L~~~ 945 (1023)
||+--.+.++.
T Consensus 266 SGR~A~QF~~~ 276 (287)
T COG2607 266 SGRVAWQFIRD 276 (287)
T ss_pred ccHhHHHHHHH
Confidence 77766555543
No 173
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.12 E-value=1.9e-09 Score=131.15 Aligned_cols=183 Identities=17% Similarity=0.233 Sum_probs=127.7
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC---------------
Q 001707 727 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGA--------------- 791 (1023)
Q Consensus 727 vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~elg~--------------- 791 (1023)
.+|++|+|.+.+++.|...+.. + +.++.+|||||+|+|||++|+++|+.+.+
T Consensus 14 ~~f~~viGq~~~~~~L~~~i~~-----------~--~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~s 80 (614)
T PRK14971 14 STFESVVGQEALTTTLKNAIAT-----------N--KLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECES 80 (614)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc-----------C--CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchH
Confidence 5799999999999999988742 1 23467999999999999999999998752
Q ss_pred ----------cEEEEeccccchhhhhhHHHHHHHHHHHHhhc----CCeEEEeccchhhhhccCCCchhHHHHHHHHHHH
Q 001707 792 ----------NFISITGSTLTSKWFGDAEKLTKALFSFASKL----APVIIFVDEVDSLLGARGGAFEHEATRRMRNEFM 857 (1023)
Q Consensus 792 ----------~fi~vs~seL~s~~~ge~e~~I~~lF~~A~k~----~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL 857 (1023)
+++.+++... .....++.+...+... ..-|++|||+|.|.. ...+.|+
T Consensus 81 C~~~~~~~~~n~~~ld~~~~------~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~------------~a~naLL 142 (614)
T PRK14971 81 CVAFNEQRSYNIHELDAASN------NSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQ------------AAFNAFL 142 (614)
T ss_pred HHHHhcCCCCceEEeccccc------CCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCH------------HHHHHHH
Confidence 3344433211 1123344444444322 235999999999832 2345677
Q ss_pred hhhcCccCCCCceEEEEEecCCCCCCcHHHHhhcCCceeecCCCHHHHHHHHHHHHhccccCCc-cCHHHHHHHccCCcH
Q 001707 858 SAWDGLRSKESQKILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLESG-FQFNELANATEGYSG 936 (1023)
Q Consensus 858 ~~Ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~V~lPd~eeR~~ILk~~L~~~~l~~d-vdl~~LA~~TeGySg 936 (1023)
..|+.. ....++|.+|+.+..+-+.+++|+ ..+.|..++.++...+++..+...++.-+ ..+..|+..+.| +.
T Consensus 143 K~LEep----p~~tifIL~tt~~~kIl~tI~SRc-~iv~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~La~~s~g-dl 216 (614)
T PRK14971 143 KTLEEP----PSYAIFILATTEKHKILPTILSRC-QIFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQKADG-GM 216 (614)
T ss_pred HHHhCC----CCCeEEEEEeCCchhchHHHHhhh-heeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 776653 234556666667788999999998 57899999999999999988887776533 346777877765 66
Q ss_pred HHHHHHHHHH
Q 001707 937 SDLKNLCIAA 946 (1023)
Q Consensus 937 aDL~~L~~~A 946 (1023)
+++.+++...
T Consensus 217 r~al~~Lekl 226 (614)
T PRK14971 217 RDALSIFDQV 226 (614)
T ss_pred HHHHHHHHHH
Confidence 6666655443
No 174
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.10 E-value=9.1e-10 Score=124.82 Aligned_cols=161 Identities=23% Similarity=0.352 Sum_probs=100.0
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-------CCc--EEEEe
Q 001707 727 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEA-------GAN--FISIT 797 (1023)
Q Consensus 727 vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~el-------g~~--fi~vs 797 (1023)
..|++|.|++.++..|.-.+.. ....++||+|+||||||++|+++|.-+ +.+ +..+.
T Consensus 5 ~~f~~i~Gq~~~~~~l~~~~~~--------------~~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~ 70 (334)
T PRK13407 5 FPFSAIVGQEEMKQAMVLTAID--------------PGIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPE 70 (334)
T ss_pred CCHHHhCCHHHHHHHHHHHHhc--------------cCCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCccc
Confidence 5689999999999988754421 112579999999999999999999988 332 11110
Q ss_pred c-c--------ccch---------------hhhhhH--HHHH-H--HHHHH--HhhcCCeEEEeccchhhhhccCCCchh
Q 001707 798 G-S--------TLTS---------------KWFGDA--EKLT-K--ALFSF--ASKLAPVIIFVDEVDSLLGARGGAFEH 846 (1023)
Q Consensus 798 ~-s--------eL~s---------------~~~ge~--e~~I-~--~lF~~--A~k~~PsIIfIDEID~L~~~r~~~~~~ 846 (1023)
+ . .+.. ..+|.. +..+ . ..|.. ..+....+||||||+.+..
T Consensus 71 ~~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl~~-------- 142 (334)
T PRK13407 71 DCPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLLED-------- 142 (334)
T ss_pred CCcccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhCCH--------
Confidence 0 0 0000 011110 0000 0 00110 0012236999999999732
Q ss_pred HHHHHHHHHHHhhhc---------CccCCCCceEEEEEecCCCC-CCcHHHHhhcCCceeecCCCH-HHHHHHHHHHH
Q 001707 847 EATRRMRNEFMSAWD---------GLRSKESQKILILGATNRPF-DLDDAVIRRLPRRIYVDLPDA-ENRMKILRIFL 913 (1023)
Q Consensus 847 e~~~ril~~LL~~Ld---------gl~~~~~~~VlVIaTTN~p~-~Ld~aLlrRFd~~I~V~lPd~-eeR~~ILk~~L 913 (1023)
.+.+.|+..|+ |.......++++|+|+|..+ .++++++.||...+.++.|.. ++|.+|++...
T Consensus 143 ----~~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLldRF~~~v~v~~~~~~~e~~~il~~~~ 216 (334)
T PRK13407 143 ----HIVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLDRFGLSVEVRSPRDVETRVEVIRRRD 216 (334)
T ss_pred ----HHHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHhhcceEEEcCCCCcHHHHHHHHHHhh
Confidence 22333444432 22222345789999999755 599999999999999988766 89999998754
No 175
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.08 E-value=7e-10 Score=124.75 Aligned_cols=140 Identities=15% Similarity=0.195 Sum_probs=95.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccchh--hhhhHH----------HHHHHHHHHHhhcCCeEEEecc
Q 001707 765 CKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTSK--WFGDAE----------KLTKALFSFASKLAPVIIFVDE 832 (1023)
Q Consensus 765 ~~gVLL~GPPGTGKT~LArAIA~elg~~fi~vs~seL~s~--~~ge~e----------~~I~~lF~~A~k~~PsIIfIDE 832 (1023)
.++|||.||||||||++|+++|..++.+++.+++...+.. ..|... ......+..|.+ .+.+|++||
T Consensus 64 ~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~-~g~illlDE 142 (327)
T TIGR01650 64 DRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQ-HNVALCFDE 142 (327)
T ss_pred CCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHh-CCeEEEech
Confidence 3579999999999999999999999999999987665433 333211 111223444443 568899999
Q ss_pred chhhhhccCCCchhHHHHHHHHHHHhh-----h-cCccC-CCCceEEEEEecCCCC------------CCcHHHHhhcCC
Q 001707 833 VDSLLGARGGAFEHEATRRMRNEFMSA-----W-DGLRS-KESQKILILGATNRPF------------DLDDAVIRRLPR 893 (1023)
Q Consensus 833 ID~L~~~r~~~~~~e~~~ril~~LL~~-----L-dgl~~-~~~~~VlVIaTTN~p~------------~Ld~aLlrRFd~ 893 (1023)
+|..-+. ....++.+|.. + +.... .....+.||||+|... .|++++++||..
T Consensus 143 in~a~p~---------~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lDRF~i 213 (327)
T TIGR01650 143 YDAGRPD---------VMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQMDRWSI 213 (327)
T ss_pred hhccCHH---------HHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHHhheee
Confidence 9986321 11223333321 1 11111 1334688999999865 278999999987
Q ss_pred ceeecCCCHHHHHHHHHHHHh
Q 001707 894 RIYVDLPDAENRMKILRIFLA 914 (1023)
Q Consensus 894 ~I~V~lPd~eeR~~ILk~~L~ 914 (1023)
.+.++.|+.++-.+|+.....
T Consensus 214 ~~~~~Yp~~e~E~~Il~~~~~ 234 (327)
T TIGR01650 214 VTTLNYLEHDNEAAIVLAKAK 234 (327)
T ss_pred EeeCCCCCHHHHHHHHHhhcc
Confidence 788999999999999887643
No 176
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.08 E-value=5e-09 Score=119.77 Aligned_cols=189 Identities=16% Similarity=0.112 Sum_probs=120.5
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC-------cEEEE-e-
Q 001707 727 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGA-------NFISI-T- 797 (1023)
Q Consensus 727 vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~elg~-------~fi~v-s- 797 (1023)
..+++|.|.+.+++.|...+.. + +.++.+||+||+|+|||++|+++|+.+.. +.... .
T Consensus 20 ~~~~~l~Gh~~a~~~L~~a~~~-----------g--rl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~ 86 (351)
T PRK09112 20 SENTRLFGHEEAEAFLAQAYRE-----------G--KLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPD 86 (351)
T ss_pred CchhhccCcHHHHHHHHHHHHc-----------C--CCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCC
Confidence 4688999999999999988733 2 34567999999999999999999998854 11000 0
Q ss_pred --c-----------cccc--h-h--h-h----h-hHHHHHHHHHHH----HhhcCCeEEEeccchhhhhccCCCchhHHH
Q 001707 798 --G-----------STLT--S-K--W-F----G-DAEKLTKALFSF----ASKLAPVIIFVDEVDSLLGARGGAFEHEAT 849 (1023)
Q Consensus 798 --~-----------seL~--s-~--~-~----g-e~e~~I~~lF~~----A~k~~PsIIfIDEID~L~~~r~~~~~~e~~ 849 (1023)
| +++. . . . . . -.-..++.+-.. +.....-||+|||+|.|.
T Consensus 87 ~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~------------ 154 (351)
T PRK09112 87 PASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMN------------ 154 (351)
T ss_pred CCCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcC------------
Confidence 0 0110 0 0 0 0 0 001222332222 222345699999999983
Q ss_pred HHHHHHHHhhhcCccCCCCceEEEEEecCCCCCCcHHHHhhcCCceeecCCCHHHHHHHHHHHHhccccCCccCHHHHHH
Q 001707 850 RRMRNEFMSAWDGLRSKESQKILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLESGFQFNELAN 929 (1023)
Q Consensus 850 ~ril~~LL~~Ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~V~lPd~eeR~~ILk~~L~~~~l~~dvdl~~LA~ 929 (1023)
....+.|+..++.. ..+.++|..|+.+..+.+.+++|+ ..+.+++|+.++...++........ .++..+..++.
T Consensus 155 ~~aanaLLk~LEEp----p~~~~fiLit~~~~~llptIrSRc-~~i~l~pl~~~~~~~~L~~~~~~~~-~~~~~~~~i~~ 228 (351)
T PRK09112 155 RNAANAILKTLEEP----PARALFILISHSSGRLLPTIRSRC-QPISLKPLDDDELKKALSHLGSSQG-SDGEITEALLQ 228 (351)
T ss_pred HHHHHHHHHHHhcC----CCCceEEEEECChhhccHHHHhhc-cEEEecCCCHHHHHHHHHHhhcccC-CCHHHHHHHHH
Confidence 12245677777653 234555556777888889999999 6899999999999999987533222 11233566777
Q ss_pred HccCCcHHHHHHHHHHHH
Q 001707 930 ATEGYSGSDLKNLCIAAA 947 (1023)
Q Consensus 930 ~TeGySgaDL~~L~~~Aa 947 (1023)
.+.| +++...+++....
T Consensus 229 ~s~G-~pr~Al~ll~~~~ 245 (351)
T PRK09112 229 RSKG-SVRKALLLLNYGG 245 (351)
T ss_pred HcCC-CHHHHHHHHhcCc
Confidence 7776 5555555554433
No 177
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.07 E-value=1.2e-09 Score=130.07 Aligned_cols=167 Identities=22% Similarity=0.287 Sum_probs=110.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccchhhhhhHHHHHHHH-HHHH---hhcCCeEEEeccchhhhhccC
Q 001707 766 KGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTSKWFGDAEKLTKAL-FSFA---SKLAPVIIFVDEVDSLLGARG 841 (1023)
Q Consensus 766 ~gVLL~GPPGTGKT~LArAIA~elg~~fi~vs~seL~s~~~ge~e~~I~~l-F~~A---~k~~PsIIfIDEID~L~~~r~ 841 (1023)
+-+||+||||-|||+||+.||+++|+.++.+++++-.+.. .....|..+ +... ....|.+|+|||||--.
T Consensus 327 KilLL~GppGlGKTTLAHViAkqaGYsVvEINASDeRt~~--~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa~---- 400 (877)
T KOG1969|consen 327 KILLLCGPPGLGKTTLAHVIAKQAGYSVVEINASDERTAP--MVKEKIENAVQNHSVLDADSRPVCLVIDEIDGAP---- 400 (877)
T ss_pred ceEEeecCCCCChhHHHHHHHHhcCceEEEecccccccHH--HHHHHHHHHHhhccccccCCCcceEEEecccCCc----
Confidence 5678999999999999999999999999999998865421 112222221 2111 23579999999998521
Q ss_pred CCchhHHHHHHHHHHHhhhc-------CccCCCC----------ceEEEEEecCCCCCCcHHHH--hhcCCceeecCCCH
Q 001707 842 GAFEHEATRRMRNEFMSAWD-------GLRSKES----------QKILILGATNRPFDLDDAVI--RRLPRRIYVDLPDA 902 (1023)
Q Consensus 842 ~~~~~e~~~ril~~LL~~Ld-------gl~~~~~----------~~VlVIaTTN~p~~Ld~aLl--rRFd~~I~V~lPd~ 902 (1023)
...+..++..+. |-..... -.--|||.||.... |+|+ |-|...|+|.+|..
T Consensus 401 --------~~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdLYa--PaLR~Lr~~A~ii~f~~p~~ 470 (877)
T KOG1969|consen 401 --------RAAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDLYA--PALRPLRPFAEIIAFVPPSQ 470 (877)
T ss_pred --------HHHHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecCccc--hhhhhcccceEEEEecCCCh
Confidence 222333333333 1111000 01237888887543 4444 46888999999999
Q ss_pred HHHHHHHHHHHhccccCCccCHHHHHHHccCCcHHHHHHHHHHHHHHHH
Q 001707 903 ENRMKILRIFLAHESLESGFQFNELANATEGYSGSDLKNLCIAAAYRPV 951 (1023)
Q Consensus 903 eeR~~ILk~~L~~~~l~~dvdl~~LA~~TeGySgaDL~~L~~~Aa~~Ai 951 (1023)
....+-|+.++..+++. .|...|+..++ ++..||++.++..-+.+.
T Consensus 471 s~Lv~RL~~IC~rE~mr--~d~~aL~~L~e-l~~~DIRsCINtLQfLa~ 516 (877)
T KOG1969|consen 471 SRLVERLNEICHRENMR--ADSKALNALCE-LTQNDIRSCINTLQFLAS 516 (877)
T ss_pred hHHHHHHHHHHhhhcCC--CCHHHHHHHHH-HhcchHHHHHHHHHHHHH
Confidence 99999999998888774 45555555555 455699998888766665
No 178
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=6.2e-09 Score=119.56 Aligned_cols=199 Identities=24% Similarity=0.281 Sum_probs=127.1
Q ss_pred ccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-----EEEEeccccchhh-
Q 001707 732 IGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGAN-----FISITGSTLTSKW- 805 (1023)
Q Consensus 732 IgGle~vk~~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~elg~~-----fi~vs~seL~s~~- 805 (1023)
+.+.+..+.++...+.-.+. + ..|.++++|||||||||.+++.++.++.-. +++++|..+.+.+
T Consensus 19 l~~Re~ei~~l~~~l~~~~~-------~---~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~ 88 (366)
T COG1474 19 LPHREEEINQLASFLAPALR-------G---ERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQ 88 (366)
T ss_pred ccccHHHHHHHHHHHHHHhc-------C---CCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHH
Confidence 66788888888887644322 2 123469999999999999999999988433 8899987654332
Q ss_pred --------------hhh-HHHHHHHHHHHHh-hcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhcCccCCCCc
Q 001707 806 --------------FGD-AEKLTKALFSFAS-KLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQ 869 (1023)
Q Consensus 806 --------------~ge-~e~~I~~lF~~A~-k~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~~~~ 869 (1023)
.|. .......++.... .....||++||+|.|....+ .++-.|+..... ...
T Consensus 89 i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~---------~~LY~L~r~~~~----~~~ 155 (366)
T COG1474 89 VLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDG---------EVLYSLLRAPGE----NKV 155 (366)
T ss_pred HHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccc---------hHHHHHHhhccc----cce
Confidence 111 1222333333322 24568999999999975542 223333333222 256
Q ss_pred eEEEEEecCCCC---CCcHHHHhhcC-CceeecCCCHHHHHHHHHHHHhcc---ccCCccCHHHHHHHccCC--cHHHHH
Q 001707 870 KILILGATNRPF---DLDDAVIRRLP-RRIYVDLPDAENRMKILRIFLAHE---SLESGFQFNELANATEGY--SGSDLK 940 (1023)
Q Consensus 870 ~VlVIaTTN~p~---~Ld~aLlrRFd-~~I~V~lPd~eeR~~ILk~~L~~~---~l~~dvdl~~LA~~TeGy--SgaDL~ 940 (1023)
+|.||+.+|..+ .+++.+.++|. ..|.|++.+.+|...|++...... ....+.-+..+|....-. ..+--.
T Consensus 156 ~v~vi~i~n~~~~~~~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~ai 235 (366)
T COG1474 156 KVSIIAVSNDDKFLDYLDPRVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAI 235 (366)
T ss_pred eEEEEEEeccHHHHHHhhhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHH
Confidence 789999998874 48888888763 458899999999999999886632 111222244344333322 334444
Q ss_pred HHHHHHHHHHHHH
Q 001707 941 NLCIAAAYRPVQE 953 (1023)
Q Consensus 941 ~L~~~Aa~~Airr 953 (1023)
.+|+.|+..|-++
T Consensus 236 dilr~A~eiAe~~ 248 (366)
T COG1474 236 DILRRAGEIAERE 248 (366)
T ss_pred HHHHHHHHHHHhh
Confidence 6677777777654
No 179
>PHA02244 ATPase-like protein
Probab=99.05 E-value=1.9e-09 Score=122.68 Aligned_cols=125 Identities=19% Similarity=0.222 Sum_probs=79.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccchhhh---hhHHHHHHHHHHHHhhcCCeEEEeccchhhhhccCC
Q 001707 766 KGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTSKWF---GDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGG 842 (1023)
Q Consensus 766 ~gVLL~GPPGTGKT~LArAIA~elg~~fi~vs~seL~s~~~---ge~e~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~ 842 (1023)
.+|||+||||||||+||+++|..++.+|+.++...-..... .........-|..|. ....+|||||++.+.+..
T Consensus 120 ~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G~i~~~g~~~dgpLl~A~-~~GgvLiLDEId~a~p~v-- 196 (383)
T PHA02244 120 IPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKGFIDANGKFHETPFYEAF-KKGGLFFIDEIDASIPEA-- 196 (383)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhcccccccccccchHHHHHh-hcCCEEEEeCcCcCCHHH--
Confidence 46999999999999999999999999999987421000111 111111112233333 356899999999873221
Q ss_pred CchhHHHHHHHHHHH-----hhhcCccCCCCceEEEEEecCCC-----------CCCcHHHHhhcCCceeecCCCH
Q 001707 843 AFEHEATRRMRNEFM-----SAWDGLRSKESQKILILGATNRP-----------FDLDDAVIRRLPRRIYVDLPDA 902 (1023)
Q Consensus 843 ~~~~e~~~ril~~LL-----~~Ldgl~~~~~~~VlVIaTTN~p-----------~~Ld~aLlrRFd~~I~V~lPd~ 902 (1023)
...++.++ ..+++.. ....++.||+|+|.+ ..|++++++|| ..|.+..|+.
T Consensus 197 -------q~~L~~lLd~r~l~l~g~~i-~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllDRF-v~I~~dyp~~ 263 (383)
T PHA02244 197 -------LIIINSAIANKFFDFADERV-TAHEDFRVISAGNTLGKGADHIYVARNKIDGATLDRF-APIEFDYDEK 263 (383)
T ss_pred -------HHHHHHHhccCeEEecCcEE-ecCCCEEEEEeeCCCccCcccccCCCcccCHHHHhhc-EEeeCCCCcH
Confidence 11122222 1222221 123468899999974 45899999999 4688999884
No 180
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.03 E-value=9.8e-09 Score=115.35 Aligned_cols=169 Identities=16% Similarity=0.220 Sum_probs=111.7
Q ss_pred ccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC--------cEEEEecc
Q 001707 728 RFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGA--------NFISITGS 799 (1023)
Q Consensus 728 tfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~elg~--------~fi~vs~s 799 (1023)
+|++|.|.+.+++.|...+.. + +.++.+||+||+|+|||++|+++|+.+-+ .++.+...
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~~-----------~--~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~ 68 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSIIK-----------N--RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPI 68 (313)
T ss_pred ChhhccCcHHHHHHHHHHHHc-----------C--CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccc
Confidence 589999999999999888732 1 33467899999999999999999998732 23333221
Q ss_pred ccchhhhhhHHHHHHHHHHHHh----hcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhcCccCCCCceEEEEE
Q 001707 800 TLTSKWFGDAEKLTKALFSFAS----KLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILG 875 (1023)
Q Consensus 800 eL~s~~~ge~e~~I~~lF~~A~----k~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~~~~~VlVIa 875 (1023)
+ +... .-..++.+...+. ....-|++||++|.+. ....|.|+..++.. +..+++|.
T Consensus 69 ~--~~~i--~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~------------~~a~naLLK~LEep----p~~t~~il 128 (313)
T PRK05564 69 N--KKSI--GVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMT------------EQAQNAFLKTIEEP----PKGVFIIL 128 (313)
T ss_pred c--CCCC--CHHHHHHHHHHHhcCcccCCceEEEEechhhcC------------HHHHHHHHHHhcCC----CCCeEEEE
Confidence 0 1111 1122444444332 2334699999999883 22345677777653 23455555
Q ss_pred ecCCCCCCcHHHHhhcCCceeecCCCHHHHHHHHHHHHhccccCCccCHHHHHHHccC
Q 001707 876 ATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLESGFQFNELANATEG 933 (1023)
Q Consensus 876 TTN~p~~Ld~aLlrRFd~~I~V~lPd~eeR~~ILk~~L~~~~l~~dvdl~~LA~~TeG 933 (1023)
+|+.++.+.+.+++|+ ..+.+..|+.++...++...+.. + +...+..++..+.|
T Consensus 129 ~~~~~~~ll~TI~SRc-~~~~~~~~~~~~~~~~l~~~~~~--~-~~~~~~~l~~~~~g 182 (313)
T PRK05564 129 LCENLEQILDTIKSRC-QIYKLNRLSKEEIEKFISYKYND--I-KEEEKKSAIAFSDG 182 (313)
T ss_pred EeCChHhCcHHHHhhc-eeeeCCCcCHHHHHHHHHHHhcC--C-CHHHHHHHHHHcCC
Confidence 6677889999999999 58899999999888888765431 1 22335556666665
No 181
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.03 E-value=1.4e-08 Score=115.85 Aligned_cols=161 Identities=22% Similarity=0.287 Sum_probs=102.6
Q ss_pred CcccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC-------CcEEEEec
Q 001707 726 GVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAG-------ANFISITG 798 (1023)
Q Consensus 726 ~vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~elg-------~~fi~vs~ 798 (1023)
...|++|+|++++|..|...+..| ...+|||.|++|||||++|++++..+. .+|. ..+
T Consensus 13 ~~pf~~ivGq~~~k~al~~~~~~p--------------~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~-~~p 77 (350)
T CHL00081 13 VFPFTAIVGQEEMKLALILNVIDP--------------KIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFN-SHP 77 (350)
T ss_pred CCCHHHHhChHHHHHHHHHhccCC--------------CCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCC-CCC
Confidence 357999999999999998766432 124799999999999999999987762 2332 000
Q ss_pred --cc-----cchh---------------h----hhhHHHH------HHHHHHHHh---------hcCCeEEEeccchhhh
Q 001707 799 --ST-----LTSK---------------W----FGDAEKL------TKALFSFAS---------KLAPVIIFVDEVDSLL 837 (1023)
Q Consensus 799 --se-----L~s~---------------~----~ge~e~~------I~~lF~~A~---------k~~PsIIfIDEID~L~ 837 (1023)
++ +... + .+.++.. +...|.... +....+||||||+.+.
T Consensus 78 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~ 157 (350)
T CHL00081 78 SDPELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLD 157 (350)
T ss_pred CChhhhchhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhCC
Confidence 00 0000 0 0111111 111222111 2234799999999984
Q ss_pred hccCCCchhHHHHHHHHHHHhhhc---------CccCCCCceEEEEEecCCCC-CCcHHHHhhcCCceeecCCC-HHHHH
Q 001707 838 GARGGAFEHEATRRMRNEFMSAWD---------GLRSKESQKILILGATNRPF-DLDDAVIRRLPRRIYVDLPD-AENRM 906 (1023)
Q Consensus 838 ~~r~~~~~~e~~~ril~~LL~~Ld---------gl~~~~~~~VlVIaTTN~p~-~Ld~aLlrRFd~~I~V~lPd-~eeR~ 906 (1023)
.. . ...|+..|+ |.......++++|+|.|..+ .+.++++.||...+.+..|+ .+.+.
T Consensus 158 ~~--------~----Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~LldRf~l~i~l~~~~~~~~e~ 225 (350)
T CHL00081 158 DH--------L----VDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGMHAEIRTVKDPELRV 225 (350)
T ss_pred HH--------H----HHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHHHhCceeecCCCCChHHHH
Confidence 22 2 222333332 22222345788999888765 59999999999999999987 69999
Q ss_pred HHHHHHH
Q 001707 907 KILRIFL 913 (1023)
Q Consensus 907 ~ILk~~L 913 (1023)
+|++...
T Consensus 226 ~il~~~~ 232 (350)
T CHL00081 226 KIVEQRT 232 (350)
T ss_pred HHHHhhh
Confidence 9998754
No 182
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.02 E-value=8.3e-09 Score=118.55 Aligned_cols=183 Identities=19% Similarity=0.159 Sum_probs=118.1
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc--------------
Q 001707 727 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGAN-------------- 792 (1023)
Q Consensus 727 vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~elg~~-------------- 792 (1023)
.++++|+|.+.+++.|...+.. + +.++.+||+||+|+||+++|.++|+.+-+.
T Consensus 16 ~~~~~iiGq~~~~~~L~~~~~~-----------~--rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~ 82 (365)
T PRK07471 16 RETTALFGHAAAEAALLDAYRS-----------G--RLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTS 82 (365)
T ss_pred CchhhccChHHHHHHHHHHHHc-----------C--CCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCcccccccc
Confidence 4789999999999999988743 1 345679999999999999999999987221
Q ss_pred --------------------EEEEecc--ccchhhhhh-HHHHHHHHHHHH----hhcCCeEEEeccchhhhhccCCCch
Q 001707 793 --------------------FISITGS--TLTSKWFGD-AEKLTKALFSFA----SKLAPVIIFVDEVDSLLGARGGAFE 845 (1023)
Q Consensus 793 --------------------fi~vs~s--eL~s~~~ge-~e~~I~~lF~~A----~k~~PsIIfIDEID~L~~~r~~~~~ 845 (1023)
++.+... +-....... .-..|+.+-..+ ....+.||+|||+|.+.
T Consensus 83 l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~-------- 154 (365)
T PRK07471 83 LAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMN-------- 154 (365)
T ss_pred ccCCCCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcC--------
Confidence 1111110 000000000 112244443333 23457899999999873
Q ss_pred hHHHHHHHHHHHhhhcCccCCCCceEEEEEecCCCCCCcHHHHhhcCCceeecCCCHHHHHHHHHHHHhccccCCccCHH
Q 001707 846 HEATRRMRNEFMSAWDGLRSKESQKILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLESGFQFN 925 (1023)
Q Consensus 846 ~e~~~ril~~LL~~Ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~V~lPd~eeR~~ILk~~L~~~~l~~dvdl~ 925 (1023)
....+.|+..++.. ....++|.+|+.++.+.+.+++|+ ..+.+++|+.++-.+++...... ..+..+.
T Consensus 155 ----~~aanaLLK~LEep----p~~~~~IL~t~~~~~llpti~SRc-~~i~l~~l~~~~i~~~L~~~~~~---~~~~~~~ 222 (365)
T PRK07471 155 ----ANAANALLKVLEEP----PARSLFLLVSHAPARLLPTIRSRC-RKLRLRPLAPEDVIDALAAAGPD---LPDDPRA 222 (365)
T ss_pred ----HHHHHHHHHHHhcC----CCCeEEEEEECCchhchHHhhccc-eEEECCCCCHHHHHHHHHHhccc---CCHHHHH
Confidence 23345677776543 234667778888888999999998 68899999999999988875321 1122234
Q ss_pred HHHHHccCCcHHHHHHHH
Q 001707 926 ELANATEGYSGSDLKNLC 943 (1023)
Q Consensus 926 ~LA~~TeGySgaDL~~L~ 943 (1023)
.++..+.| ++....+++
T Consensus 223 ~l~~~s~G-sp~~Al~ll 239 (365)
T PRK07471 223 ALAALAEG-SVGRALRLA 239 (365)
T ss_pred HHHHHcCC-CHHHHHHHh
Confidence 66767766 444444444
No 183
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=99.02 E-value=2e-09 Score=101.72 Aligned_cols=127 Identities=34% Similarity=0.425 Sum_probs=82.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCc---EEEEeccccchhh--------------hhhHHHHHHHHHHHHhhcCCeEE
Q 001707 766 KGILLFGPPGTGKTLLAKALATEAGAN---FISITGSTLTSKW--------------FGDAEKLTKALFSFASKLAPVII 828 (1023)
Q Consensus 766 ~gVLL~GPPGTGKT~LArAIA~elg~~---fi~vs~seL~s~~--------------~ge~e~~I~~lF~~A~k~~PsII 828 (1023)
..++|+||||||||++++++|..+... ++.+++....... ..........++..++...+.||
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi 82 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDVL 82 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 579999999999999999999999765 7888776543321 12345667788888988888999
Q ss_pred EeccchhhhhccCCCchhHHHHHHHHHHHhhhcCccCCCCceEEEEEecCC-CCCCcHHHHhhcCCceeecCC
Q 001707 829 FVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNR-PFDLDDAVIRRLPRRIYVDLP 900 (1023)
Q Consensus 829 fIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~~~~~VlVIaTTN~-p~~Ld~aLlrRFd~~I~V~lP 900 (1023)
||||++.+....... ............ .. .......+|+++|. ....+..+..|++..+.+..+
T Consensus 83 iiDei~~~~~~~~~~-----~~~~~~~~~~~~-~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (148)
T smart00382 83 ILDEITSLLDAEQEA-----LLLLLEELRLLL-LL--KSEKNLTVILTTNDEKDLGPALLRRRFDRRIVLLLI 147 (148)
T ss_pred EEECCcccCCHHHHH-----HHHhhhhhHHHH-HH--HhcCCCEEEEEeCCCccCchhhhhhccceEEEecCC
Confidence 999999985432110 000000000000 00 12335778888886 444555666688777776544
No 184
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.98 E-value=9.3e-09 Score=106.84 Aligned_cols=143 Identities=18% Similarity=0.197 Sum_probs=94.6
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCc------------------------EEEEeccccchhhhhhHHHHHHHHHHH
Q 001707 764 PCKGILLFGPPGTGKTLLAKALATEAGAN------------------------FISITGSTLTSKWFGDAEKLTKALFSF 819 (1023)
Q Consensus 764 p~~gVLL~GPPGTGKT~LArAIA~elg~~------------------------fi~vs~seL~s~~~ge~e~~I~~lF~~ 819 (1023)
.++.+||+||+|+|||++|++++..+... +..+.... .. -....++.+...
T Consensus 13 ~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~---~~--~~~~~i~~i~~~ 87 (188)
T TIGR00678 13 LAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEG---QS--IKVDQVRELVEF 87 (188)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEecccc---Cc--CCHHHHHHHHHH
Confidence 44679999999999999999999987431 22222111 00 112334444444
Q ss_pred Hhh----cCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhcCccCCCCceEEEEEecCCCCCCcHHHHhhcCCce
Q 001707 820 ASK----LAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPFDLDDAVIRRLPRRI 895 (1023)
Q Consensus 820 A~k----~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I 895 (1023)
+.. ....||+|||+|.+.. ...+.|+..|+.. +...++|.+|+.+..+.+++.+|+ ..+
T Consensus 88 ~~~~~~~~~~kviiide~~~l~~------------~~~~~Ll~~le~~----~~~~~~il~~~~~~~l~~~i~sr~-~~~ 150 (188)
T TIGR00678 88 LSRTPQESGRRVVIIEDAERMNE------------AAANALLKTLEEP----PPNTLFILITPSPEKLLPTIRSRC-QVL 150 (188)
T ss_pred HccCcccCCeEEEEEechhhhCH------------HHHHHHHHHhcCC----CCCeEEEEEECChHhChHHHHhhc-EEe
Confidence 433 3457999999999842 1245566666553 234556666777788999999999 588
Q ss_pred eecCCCHHHHHHHHHHHHhccccCCccCHHHHHHHccC
Q 001707 896 YVDLPDAENRMKILRIFLAHESLESGFQFNELANATEG 933 (1023)
Q Consensus 896 ~V~lPd~eeR~~ILk~~L~~~~l~~dvdl~~LA~~TeG 933 (1023)
.+.+|+.++..+++... ++ ++..+..++..+.|
T Consensus 151 ~~~~~~~~~~~~~l~~~----gi-~~~~~~~i~~~~~g 183 (188)
T TIGR00678 151 PFPPLSEEALLQWLIRQ----GI-SEEAAELLLALAGG 183 (188)
T ss_pred eCCCCCHHHHHHHHHHc----CC-CHHHHHHHHHHcCC
Confidence 99999999998888775 23 23346666666665
No 185
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=5e-09 Score=128.20 Aligned_cols=183 Identities=23% Similarity=0.355 Sum_probs=133.0
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEE
Q 001707 727 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEA----------GANFISI 796 (1023)
Q Consensus 727 vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~el----------g~~fi~v 796 (1023)
..+|.++|.++-+..+.+.+.. +...+-+|.|+||+|||.++..+|... +..++.+
T Consensus 167 gklDPvIGRd~EI~r~iqIL~R--------------R~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sL 232 (786)
T COG0542 167 GKLDPVIGRDEEIRRTIQILSR--------------RTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSL 232 (786)
T ss_pred CCCCCCcChHHHHHHHHHHHhc--------------cCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEe
Confidence 4677889999888888776632 112356889999999999999999876 4678889
Q ss_pred eccccch--hhhhhHHHHHHHHHHHHhhcCCeEEEeccchhhhhccCCCch-hHHHHHHHHHHHhhhcCccCCCCceEEE
Q 001707 797 TGSTLTS--KWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFE-HEATRRMRNEFMSAWDGLRSKESQKILI 873 (1023)
Q Consensus 797 s~seL~s--~~~ge~e~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~-~e~~~ril~~LL~~Ldgl~~~~~~~VlV 873 (1023)
++..+.. +|.|+.|..++.+..+..+..+.|||||||+.+.+.....++ -.+.+-+. -.| ....+-+
T Consensus 233 D~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLK-PaL---------ARGeL~~ 302 (786)
T COG0542 233 DLGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLK-PAL---------ARGELRC 302 (786)
T ss_pred cHHHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhH-HHH---------hcCCeEE
Confidence 9888864 688999999999999999999999999999999876543221 22222222 221 2345778
Q ss_pred EEecCC-----CCCCcHHHHhhcCCceeecCCCHHHHHHHHHHHHhccccC-----CccCHHHHHHHccCC
Q 001707 874 LGATNR-----PFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLE-----SGFQFNELANATEGY 934 (1023)
Q Consensus 874 IaTTN~-----p~~Ld~aLlrRFd~~I~V~lPd~eeR~~ILk~~L~~~~l~-----~dvdl~~LA~~TeGy 934 (1023)
||+|.. ...=|+||-||| ..|.|..|+.++-..||+-+-..+... .+..+...+..+.-|
T Consensus 303 IGATT~~EYRk~iEKD~AL~RRF-Q~V~V~EPs~e~ti~ILrGlk~~yE~hH~V~i~D~Al~aAv~LS~RY 372 (786)
T COG0542 303 IGATTLDEYRKYIEKDAALERRF-QKVLVDEPSVEDTIAILRGLKERYEAHHGVRITDEALVAAVTLSDRY 372 (786)
T ss_pred EEeccHHHHHHHhhhchHHHhcC-ceeeCCCCCHHHHHHHHHHHHHHHHHccCceecHHHHHHHHHHHHhh
Confidence 888753 344788999999 578999999999999999875543322 233345555555433
No 186
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=98.96 E-value=2.5e-09 Score=102.90 Aligned_cols=81 Identities=9% Similarity=0.237 Sum_probs=62.2
Q ss_pred HHHHHHHHHhhcC-CeEEEEcCchhhhhhc--cCCccHHHHHHHHHHHHhcCCC---CEEEEecccCCCCCccccccccc
Q 001707 473 AMEALCEVLHSTQ-PLIVYFPDSSLWLSRA--VPRCNRKEFVRKVEEMFDQLSG---PVVLICGQNKNETGPKEKEKFTM 546 (1023)
Q Consensus 473 ~i~~L~e~~~~~~-p~Iiff~di~~~~~~s--~~~~~~~~~~s~l~~~~~~~~g---~v~vI~~~~~~d~~~~~~~~~~~ 546 (1023)
.+..+|+.+++.. |.||||||+|.+.... ........+++.|...|+.... +++||
T Consensus 45 ~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI------------------ 106 (132)
T PF00004_consen 45 KIRDFFKKAKKSAKPCVLFIDEIDKLFPKSQPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVI------------------ 106 (132)
T ss_dssp HHHHHHHHHHHTSTSEEEEEETGGGTSHHCSTSSSHHHHHHHHHHHHHHHTTTTTSSSEEEE------------------
T ss_pred ccccccccccccccceeeeeccchhcccccccccccccccccceeeecccccccccccceeE------------------
Confidence 5677788888777 9999999999986664 1223344568888888888875 36665
Q ss_pred cccccccccCCCCcchhhhcccccCCCcchHHHH-hccccEEEEcC
Q 001707 547 ILPNFGRLAKLPLPLQRLTEGLKATKRSDDNEIY-NLFTNVLSIHP 591 (1023)
Q Consensus 547 ~~~~~~~~~~~~~~~~~LvIGmTNR~d~iDeaL~-rrFe~~ieI~L 591 (1023)
++||+++.||++|+ +||+..|+|+|
T Consensus 107 --------------------~ttn~~~~i~~~l~~~rf~~~i~~~~ 132 (132)
T PF00004_consen 107 --------------------ATTNSPDKIDPALLRSRFDRRIEFPL 132 (132)
T ss_dssp --------------------EEESSGGGSCHHHHSTTSEEEEEE-S
T ss_pred --------------------EeeCChhhCCHhHHhCCCcEEEEcCC
Confidence 66777788999999 89999999986
No 187
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.94 E-value=8.8e-08 Score=104.25 Aligned_cols=192 Identities=17% Similarity=0.162 Sum_probs=114.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCC-cEEE--Eecccc-----ch---hhhh-----h-HHHHHHHHH----HHHhhcC
Q 001707 766 KGILLFGPPGTGKTLLAKALATEAGA-NFIS--ITGSTL-----TS---KWFG-----D-AEKLTKALF----SFASKLA 824 (1023)
Q Consensus 766 ~gVLL~GPPGTGKT~LArAIA~elg~-~fi~--vs~seL-----~s---~~~g-----e-~e~~I~~lF----~~A~k~~ 824 (1023)
..++|+||+|+|||++++.++..+.. .++. +....+ .. ...| . ....+..+. .......
T Consensus 44 ~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~~ 123 (269)
T TIGR03015 44 GFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAGK 123 (269)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 35899999999999999999998752 2221 111111 00 0011 0 111112221 2233556
Q ss_pred CeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhcCccCCCCceEEEEEecCC--CCCC----cHHHHhhcCCceeec
Q 001707 825 PVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNR--PFDL----DDAVIRRLPRRIYVD 898 (1023)
Q Consensus 825 PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~~~~~VlVIaTTN~--p~~L----d~aLlrRFd~~I~V~ 898 (1023)
+.||+|||++.+.. ... ..+..+... .......+.|+.+... ...+ ...+.+|+...++++
T Consensus 124 ~~vliiDe~~~l~~--------~~~-~~l~~l~~~----~~~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~r~~~~~~l~ 190 (269)
T TIGR03015 124 RALLVVDEAQNLTP--------ELL-EELRMLSNF----QTDNAKLLQIFLVGQPEFRETLQSPQLQQLRQRIIASCHLG 190 (269)
T ss_pred CeEEEEECcccCCH--------HHH-HHHHHHhCc----ccCCCCeEEEEEcCCHHHHHHHcCchhHHHHhheeeeeeCC
Confidence 78999999998731 111 111122111 1111222333333321 1112 124666887888999
Q ss_pred CCCHHHHHHHHHHHHhcccc-----CCccCHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCC
Q 001707 899 LPDAENRMKILRIFLAHESL-----ESGFQFNELANATEGYSGSDLKNLCIAAAYRPVQELLEEERKLFIQRGKNDAAPV 973 (1023)
Q Consensus 899 lPd~eeR~~ILk~~L~~~~l-----~~dvdl~~LA~~TeGySgaDL~~L~~~Aa~~Airr~l~~e~~~~~~~~~~~~~~~ 973 (1023)
+.+.++...++...+...+. ..+..+..|++.+.|+. +.|..+|..|...|..+ .
T Consensus 191 ~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p-~~i~~l~~~~~~~a~~~-------------------~ 250 (269)
T TIGR03015 191 PLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIP-RLINILCDRLLLSAFLE-------------------E 250 (269)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcc-cHHHHHHHHHHHHHHHc-------------------C
Confidence 99999999999988764331 23456788899999975 55999999888877653 1
Q ss_pred cCCCCHHHHHHHHHhhC
Q 001707 974 LRPLKLEDFIQSKAKVG 990 (1023)
Q Consensus 974 ~r~Lt~eDF~~Al~kv~ 990 (1023)
...|+.+++..++..++
T Consensus 251 ~~~i~~~~v~~~~~~~~ 267 (269)
T TIGR03015 251 KREIGGEEVREVIAEID 267 (269)
T ss_pred CCCCCHHHHHHHHHHhh
Confidence 13699999999998765
No 188
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.93 E-value=4e-09 Score=103.91 Aligned_cols=112 Identities=28% Similarity=0.398 Sum_probs=69.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccch--hhhhhHH------HHHHHHHHHHhhcCCeEEEeccchhhhh
Q 001707 767 GILLFGPPGTGKTLLAKALATEAGANFISITGSTLTS--KWFGDAE------KLTKALFSFASKLAPVIIFVDEVDSLLG 838 (1023)
Q Consensus 767 gVLL~GPPGTGKT~LArAIA~elg~~fi~vs~seL~s--~~~ge~e------~~I~~lF~~A~k~~PsIIfIDEID~L~~ 838 (1023)
+|||+||||||||+||+.+|..++.+++.+.++.... +..|... ......+..+. ..+.|+|||||+..-
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~-~~~~il~lDEin~a~- 78 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAM-RKGGILVLDEINRAP- 78 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTH-HEEEEEEESSCGG---
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeecccccccccccccccc-cceeEEEECCcccCC-
Confidence 5899999999999999999999999999988765432 1111100 00000000011 157899999999752
Q ss_pred ccCCCchhHHHHHHHHHHHhhhcCccC----------CCCc-----eEEEEEecCCCC----CCcHHHHhhc
Q 001707 839 ARGGAFEHEATRRMRNEFMSAWDGLRS----------KESQ-----KILILGATNRPF----DLDDAVIRRL 891 (1023)
Q Consensus 839 ~r~~~~~~e~~~ril~~LL~~Ldgl~~----------~~~~-----~VlVIaTTN~p~----~Ld~aLlrRF 891 (1023)
..++..|+..++.-.. .... .+.+|+|+|+.. .+++++++||
T Consensus 79 -----------~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~Rf 139 (139)
T PF07728_consen 79 -----------PEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLDRF 139 (139)
T ss_dssp -----------HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHTT-
T ss_pred -----------HHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHhhC
Confidence 2334444444442111 0111 389999999998 7999999998
No 189
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.92 E-value=2.6e-08 Score=112.36 Aligned_cols=183 Identities=16% Similarity=0.186 Sum_probs=119.8
Q ss_pred ccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc---------------
Q 001707 728 RFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGAN--------------- 792 (1023)
Q Consensus 728 tfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~elg~~--------------- 792 (1023)
.|++|+|.+.+++.|...+.. + +-++.+||+||+|+||+++|.++|+.+-..
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~-----------~--rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~ 68 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQ-----------N--RIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGN 68 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHh-----------C--CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCC
Confidence 588999999999999998843 1 234689999999999999999999987221
Q ss_pred ---EEEEeccccc-hh--------hhh-------h-HHHHHHHHHHHHhh----cCCeEEEeccchhhhhccCCCchhHH
Q 001707 793 ---FISITGSTLT-SK--------WFG-------D-AEKLTKALFSFASK----LAPVIIFVDEVDSLLGARGGAFEHEA 848 (1023)
Q Consensus 793 ---fi~vs~seL~-s~--------~~g-------e-~e~~I~~lF~~A~k----~~PsIIfIDEID~L~~~r~~~~~~e~ 848 (1023)
++.+.+.... ++ ..| . .-..++.+-..+.. ....|++||++|.|.
T Consensus 69 hPDl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~----------- 137 (314)
T PRK07399 69 HPDLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMN----------- 137 (314)
T ss_pred CCCEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcC-----------
Confidence 1222211000 00 000 0 01234445444332 235799999999883
Q ss_pred HHHHHHHHHhhhcCccCCCCceEEEEEecCCCCCCcHHHHhhcCCceeecCCCHHHHHHHHHHHHhccccCCccCHHHHH
Q 001707 849 TRRMRNEFMSAWDGLRSKESQKILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLESGFQFNELA 928 (1023)
Q Consensus 849 ~~ril~~LL~~Ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~V~lPd~eeR~~ILk~~L~~~~l~~dvdl~~LA 928 (1023)
....|.|+..|+.. + +.++|.+|+.++.|-+.+++|+ ..+.|++|+.++..++|......... +.+...++
T Consensus 138 -~~aaNaLLK~LEEP----p-~~~fILi~~~~~~Ll~TI~SRc-q~i~f~~l~~~~~~~~L~~~~~~~~~--~~~~~~l~ 208 (314)
T PRK07399 138 -EAAANALLKTLEEP----G-NGTLILIAPSPESLLPTIVSRC-QIIPFYRLSDEQLEQVLKRLGDEEIL--NINFPELL 208 (314)
T ss_pred -HHHHHHHHHHHhCC----C-CCeEEEEECChHhCcHHHHhhc-eEEecCCCCHHHHHHHHHHhhccccc--hhHHHHHH
Confidence 22346777777653 2 3356667778899999999999 68899999999999999876432211 22346778
Q ss_pred HHccCCcHHHHHHHHH
Q 001707 929 NATEGYSGSDLKNLCI 944 (1023)
Q Consensus 929 ~~TeGySgaDL~~L~~ 944 (1023)
....| ++....++++
T Consensus 209 ~~a~G-s~~~al~~l~ 223 (314)
T PRK07399 209 ALAQG-SPGAAIANIE 223 (314)
T ss_pred HHcCC-CHHHHHHHHH
Confidence 77777 4444444443
No 190
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=98.91 E-value=3.7e-08 Score=112.04 Aligned_cols=160 Identities=23% Similarity=0.331 Sum_probs=98.4
Q ss_pred ccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-------CCcEE------
Q 001707 728 RFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEA-------GANFI------ 794 (1023)
Q Consensus 728 tfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~el-------g~~fi------ 794 (1023)
.|..|+|++.+|..|.-.+..| ...+|||.|+||+|||+|+++++..+ +.++-
T Consensus 2 pf~~ivgq~~~~~al~~~~~~~--------------~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~ 67 (337)
T TIGR02030 2 PFTAIVGQDEMKLALLLNVIDP--------------KIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDP 67 (337)
T ss_pred CccccccHHHHHHHHHHHhcCC--------------CCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCc
Confidence 3788999999999886654221 12479999999999999999999876 22221
Q ss_pred ---EEec-------------------cccch-----hhhhhH--HHHHH---HHHH--HHhhcCCeEEEeccchhhhhcc
Q 001707 795 ---SITG-------------------STLTS-----KWFGDA--EKLTK---ALFS--FASKLAPVIIFVDEVDSLLGAR 840 (1023)
Q Consensus 795 ---~vs~-------------------seL~s-----~~~ge~--e~~I~---~lF~--~A~k~~PsIIfIDEID~L~~~r 840 (1023)
..+| .++-. ...|.. +..+. ..|. ...+....+||||||+.+..
T Consensus 68 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A~~GvL~lDEi~~L~~-- 145 (337)
T TIGR02030 68 EMMCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARANRGILYIDEVNLLED-- 145 (337)
T ss_pred cccChHHhhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceeccCCEEEecChHhCCH--
Confidence 0000 01100 112211 11100 0011 00122347999999999732
Q ss_pred CCCchhHHHHHHHHHHHhhhc---------CccCCCCceEEEEEecCCCC-CCcHHHHhhcCCceeecCCCH-HHHHHHH
Q 001707 841 GGAFEHEATRRMRNEFMSAWD---------GLRSKESQKILILGATNRPF-DLDDAVIRRLPRRIYVDLPDA-ENRMKIL 909 (1023)
Q Consensus 841 ~~~~~~e~~~ril~~LL~~Ld---------gl~~~~~~~VlVIaTTN~p~-~Ld~aLlrRFd~~I~V~lPd~-eeR~~IL 909 (1023)
. +...|+..|+ |.......++++|+|+|..+ .+.++++.||...+.++.|.. ++|.+|+
T Consensus 146 ------~----~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~LldRf~l~i~l~~p~~~eer~eIL 215 (337)
T TIGR02030 146 ------H----LVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGLHAEIRTVRDVELRVEIV 215 (337)
T ss_pred ------H----HHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHhhcceEEECCCCCCHHHHHHHH
Confidence 2 2233333332 22222335788999988765 599999999998899998875 8899999
Q ss_pred HHHH
Q 001707 910 RIFL 913 (1023)
Q Consensus 910 k~~L 913 (1023)
+...
T Consensus 216 ~~~~ 219 (337)
T TIGR02030 216 ERRT 219 (337)
T ss_pred Hhhh
Confidence 8743
No 191
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.91 E-value=1.1e-08 Score=119.22 Aligned_cols=143 Identities=21% Similarity=0.271 Sum_probs=85.9
Q ss_pred cccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC--c-----EEEEecc--
Q 001707 729 FDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGA--N-----FISITGS-- 799 (1023)
Q Consensus 729 fdDIgGle~vk~~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~elg~--~-----fi~vs~s-- 799 (1023)
++++.+.+...+.+...+. ..++++|+||||||||++|+++|..+.. . ++.+...
T Consensus 174 l~d~~i~e~~le~l~~~L~----------------~~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsyS 237 (459)
T PRK11331 174 LNDLFIPETTIETILKRLT----------------IKKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYS 237 (459)
T ss_pred hhcccCCHHHHHHHHHHHh----------------cCCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeeccccc
Confidence 4455556666666655441 1357999999999999999999998842 1 2223221
Q ss_pred --ccchhhhhh------HHHHHHHHHHHHhhc--CCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhcCc------
Q 001707 800 --TLTSKWFGD------AEKLTKALFSFASKL--APVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGL------ 863 (1023)
Q Consensus 800 --eL~s~~~ge------~e~~I~~lF~~A~k~--~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl------ 863 (1023)
+++..+... ....+..+...|... .|.|||||||++-.. .++..+++.+|+.-
T Consensus 238 YeDFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani-----------~kiFGel~~lLE~~~rg~~~ 306 (459)
T PRK11331 238 YEDFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANL-----------SKVFGEVMMLMEHDKRGENW 306 (459)
T ss_pred HHHHhcccCCCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCH-----------HHhhhhhhhhcccccccccc
Confidence 222111000 011233444556543 479999999998532 22333444433310
Q ss_pred ------------cCCCCceEEEEEecCCCC----CCcHHHHhhcCCceeecC
Q 001707 864 ------------RSKESQKILILGATNRPF----DLDDAVIRRLPRRIYVDL 899 (1023)
Q Consensus 864 ------------~~~~~~~VlVIaTTN~p~----~Ld~aLlrRFd~~I~V~l 899 (1023)
.-..+.++.||||+|..+ .+|.|++|||. .|.+.+
T Consensus 307 ~v~l~y~e~d~e~f~iP~Nl~IIgTMNt~Drs~~~lD~AlrRRF~-fi~i~p 357 (459)
T PRK11331 307 SVPLTYSENDEERFYVPENVYIIGLMNTADRSLAVVDYALRRRFS-FIDIEP 357 (459)
T ss_pred ceeeeccccccccccCCCCeEEEEecCccccchhhccHHHHhhhh-eEEecC
Confidence 012346799999999887 69999999994 455554
No 192
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=98.91 E-value=3.4e-08 Score=109.88 Aligned_cols=148 Identities=24% Similarity=0.327 Sum_probs=97.7
Q ss_pred cccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC--------------------
Q 001707 731 DIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAG-------------------- 790 (1023)
Q Consensus 731 DIgGle~vk~~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~elg-------------------- 790 (1023)
++.+.+.+...+..++... + +.++.+||+||||+|||++|.++|+++.
T Consensus 2 ~~~~~~~~~~~l~~~~~~~---------~---~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~ 69 (325)
T COG0470 2 ELVPWQEAVKRLLVQALES---------G---RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIP 69 (325)
T ss_pred CcccchhHHHHHHHHHHhc---------C---CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHh
Confidence 4556667777776666321 1 2234699999999999999999999986
Q ss_pred ----CcEEEEeccccchhhhhhHHHHHHHHHHHHhh----cCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhcC
Q 001707 791 ----ANFISITGSTLTSKWFGDAEKLTKALFSFASK----LAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDG 862 (1023)
Q Consensus 791 ----~~fi~vs~seL~s~~~ge~e~~I~~lF~~A~k----~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldg 862 (1023)
-.|+.++.++....- -....++.+-..... ...-||+|||+|.|.. ...+.++..+..
T Consensus 70 ~~~~~d~lel~~s~~~~~~--i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~------------~A~nallk~lEe 135 (325)
T COG0470 70 AGNHPDFLELNPSDLRKID--IIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTE------------DAANALLKTLEE 135 (325)
T ss_pred hcCCCceEEecccccCCCc--chHHHHHHHHHHhccCCCCCCceEEEeCcHHHHhH------------HHHHHHHHHhcc
Confidence 467777776654421 112233333332222 3457999999999853 224555555543
Q ss_pred ccCCCCceEEEEEecCCCCCCcHHHHhhcCCceeecCCCHHHHHHHH
Q 001707 863 LRSKESQKILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKIL 909 (1023)
Q Consensus 863 l~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~V~lPd~eeR~~IL 909 (1023)
+..+..+|.+||.+..+-+.+++|+ ..+.|.+|+...+....
T Consensus 136 ----p~~~~~~il~~n~~~~il~tI~SRc-~~i~f~~~~~~~~i~~~ 177 (325)
T COG0470 136 ----PPKNTRFILITNDPSKILPTIRSRC-QRIRFKPPSRLEAIAWL 177 (325)
T ss_pred ----CCCCeEEEEEcCChhhccchhhhcc-eeeecCCchHHHHHHHh
Confidence 3446788889999999999999999 56777775544444433
No 193
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=98.90 E-value=1.4e-08 Score=124.51 Aligned_cols=161 Identities=26% Similarity=0.370 Sum_probs=102.9
Q ss_pred ccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHh------------------
Q 001707 728 RFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEA------------------ 789 (1023)
Q Consensus 728 tfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~el------------------ 789 (1023)
.|.+|+|++.++..|.-....+ ...+|||+|+||||||++|++|+..+
T Consensus 2 pf~~ivGq~~~~~al~~~av~~--------------~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~ 67 (633)
T TIGR02442 2 PFTAIVGQEDLKLALLLNAVDP--------------RIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDP 67 (633)
T ss_pred CcchhcChHHHHHHHHHHhhCC--------------CCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCc
Confidence 3789999999998886655321 11369999999999999999999887
Q ss_pred -----------------CCcEEEEeccccchhhhhhH--HHHHH---HHHH--HHhhcCCeEEEeccchhhhhccCCCch
Q 001707 790 -----------------GANFISITGSTLTSKWFGDA--EKLTK---ALFS--FASKLAPVIIFVDEVDSLLGARGGAFE 845 (1023)
Q Consensus 790 -----------------g~~fi~vs~seL~s~~~ge~--e~~I~---~lF~--~A~k~~PsIIfIDEID~L~~~r~~~~~ 845 (1023)
..+|+.+.+.......+|.. +..+. ..+. ........|||||||+.+..
T Consensus 68 ~~~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~L~~A~~GiL~lDEi~~l~~------- 140 (633)
T TIGR02442 68 EEWCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLDIERALREGEKAFQPGLLAEAHRGILYIDEVNLLDD------- 140 (633)
T ss_pred cccChhhhhcccccccCCCCeeeCCCCCcHHHcCCcccHHHHhhcCCeeecCcceeecCCCeEEeChhhhCCH-------
Confidence 24666665543333333321 11111 0000 00111346999999999842
Q ss_pred hHHHHHHHHHHHhhhcC---------ccCCCCceEEEEEecCCC-CCCcHHHHhhcCCceeecCC-CHHHHHHHHHHHHh
Q 001707 846 HEATRRMRNEFMSAWDG---------LRSKESQKILILGATNRP-FDLDDAVIRRLPRRIYVDLP-DAENRMKILRIFLA 914 (1023)
Q Consensus 846 ~e~~~ril~~LL~~Ldg---------l~~~~~~~VlVIaTTN~p-~~Ld~aLlrRFd~~I~V~lP-d~eeR~~ILk~~L~ 914 (1023)
.+.+.|+..|+. .......+++||+|+|.. ..+.++|+.||+..|.++.| +.+++.++++..+.
T Consensus 141 -----~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~dR~~l~i~v~~~~~~~~~~~il~~~~~ 215 (633)
T TIGR02442 141 -----HLVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLDRFGLCVDVAAPRDPEERVEIIRRRLA 215 (633)
T ss_pred -----HHHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHhhcceEEEccCCCchHHHHHHHHHHHh
Confidence 223344444431 111223568999999864 35889999999988888766 46778888876543
No 194
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=98.89 E-value=6.4e-09 Score=117.63 Aligned_cols=135 Identities=32% Similarity=0.527 Sum_probs=86.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccch--hhhhhHHHHH----HHHHHHHh--hcCC--eEEEeccchh
Q 001707 766 KGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTS--KWFGDAEKLT----KALFSFAS--KLAP--VIIFVDEVDS 835 (1023)
Q Consensus 766 ~gVLL~GPPGTGKT~LArAIA~elg~~fi~vs~seL~s--~~~ge~e~~I----~~lF~~A~--k~~P--sIIfIDEID~ 835 (1023)
.++||.||||||||+||+++|..++.+|+.+.|..-+. +..|...-.. ...|.... -... +|+++|||++
T Consensus 44 ~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~~ill~DEInr 123 (329)
T COG0714 44 GHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVRVILLLDEINR 123 (329)
T ss_pred CCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccceEEEEecccc
Confidence 46999999999999999999999999999998864432 2222211111 00011000 0001 4999999998
Q ss_pred hhhccCCCchhHHHHHHHHHHHhhhc-------Ccc-CCCCceEEEEEecC-----CCCCCcHHHHhhcCCceeecCC-C
Q 001707 836 LLGARGGAFEHEATRRMRNEFMSAWD-------GLR-SKESQKILILGATN-----RPFDLDDAVIRRLPRRIYVDLP-D 901 (1023)
Q Consensus 836 L~~~r~~~~~~e~~~ril~~LL~~Ld-------gl~-~~~~~~VlVIaTTN-----~p~~Ld~aLlrRFd~~I~V~lP-d 901 (1023)
..+ .+.+.|+..|+ +.. ..-..+++||+|+| ....|++++++||...+.++.| +
T Consensus 124 a~p------------~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~e~~g~~~l~eA~ldRf~~~~~v~yp~~ 191 (329)
T COG0714 124 APP------------EVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPEALLDRFLLRIYVDYPDS 191 (329)
T ss_pred CCH------------HHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCccccCCCcCCCHHHHhhEEEEEecCCCCc
Confidence 531 22333443333 222 23346789999999 4455899999999888999999 4
Q ss_pred HHHHHHHHHHH
Q 001707 902 AENRMKILRIF 912 (1023)
Q Consensus 902 ~eeR~~ILk~~ 912 (1023)
..+...++...
T Consensus 192 ~~e~~~i~~~~ 202 (329)
T COG0714 192 EEEERIILARV 202 (329)
T ss_pred hHHHHHHHHhC
Confidence 44455554443
No 195
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.88 E-value=4.6e-08 Score=110.96 Aligned_cols=148 Identities=20% Similarity=0.269 Sum_probs=98.1
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCC------------------------cEEEEeccccchhhhhhHHHHHHHHHHH
Q 001707 764 PCKGILLFGPPGTGKTLLAKALATEAGA------------------------NFISITGSTLTSKWFGDAEKLTKALFSF 819 (1023)
Q Consensus 764 p~~gVLL~GPPGTGKT~LArAIA~elg~------------------------~fi~vs~seL~s~~~ge~e~~I~~lF~~ 819 (1023)
.++.+||+||+|+|||++|+++|+.+.+ .++.+....- ++.. .-..++.+-..
T Consensus 21 ~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~-~~~i--~id~iR~l~~~ 97 (328)
T PRK05707 21 HPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEA-DKTI--KVDQVRELVSF 97 (328)
T ss_pred cceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCC-CCCC--CHHHHHHHHHH
Confidence 4568999999999999999999998843 1222322110 0000 12233444333
Q ss_pred H----hhcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhcCccCCCCceEEEEEecCCCCCCcHHHHhhcCCce
Q 001707 820 A----SKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPFDLDDAVIRRLPRRI 895 (1023)
Q Consensus 820 A----~k~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I 895 (1023)
+ .....-|++||++|.|. ....|.|+..++.- +.++++|.+|+.++.|.+.+++|+ ..+
T Consensus 98 ~~~~~~~~~~kv~iI~~a~~m~------------~~aaNaLLK~LEEP----p~~~~fiL~t~~~~~ll~TI~SRc-~~~ 160 (328)
T PRK05707 98 VVQTAQLGGRKVVLIEPAEAMN------------RNAANALLKSLEEP----SGDTVLLLISHQPSRLLPTIKSRC-QQQ 160 (328)
T ss_pred HhhccccCCCeEEEECChhhCC------------HHHHHHHHHHHhCC----CCCeEEEEEECChhhCcHHHHhhc-eee
Confidence 3 33445699999999984 23356777777653 346788889999999999999999 468
Q ss_pred eecCCCHHHHHHHHHHHHhccccCCccCHHHHHHHccCC
Q 001707 896 YVDLPDAENRMKILRIFLAHESLESGFQFNELANATEGY 934 (1023)
Q Consensus 896 ~V~lPd~eeR~~ILk~~L~~~~l~~dvdl~~LA~~TeGy 934 (1023)
.|++|+.++-.+++...... ..+.+...++..+.|-
T Consensus 161 ~~~~~~~~~~~~~L~~~~~~---~~~~~~~~~l~la~Gs 196 (328)
T PRK05707 161 ACPLPSNEESLQWLQQALPE---SDERERIELLTLAGGS 196 (328)
T ss_pred eCCCcCHHHHHHHHHHhccc---CChHHHHHHHHHcCCC
Confidence 99999999888888764311 1223344556666663
No 196
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.88 E-value=1.1e-08 Score=113.53 Aligned_cols=178 Identities=26% Similarity=0.383 Sum_probs=121.1
Q ss_pred ccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccch-hhhh---
Q 001707 732 IGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTS-KWFG--- 807 (1023)
Q Consensus 732 IgGle~vk~~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~elg~~fi~vs~seL~s-~~~g--- 807 (1023)
|+|+++.|..+.-++....++..+-.....--.|++||..||.|+|||-+|+.+|+-.++||+.+-+..+.. +|+|
T Consensus 17 IIGQ~~AKkaVAIALRNR~RR~qL~~~lr~EV~PKNILMIGpTGVGKTEIARRLAkl~~aPFiKVEATKfTEVGYVGrDV 96 (444)
T COG1220 17 IIGQDEAKKAVAIALRNRWRRMQLEEELRDEVTPKNILMIGPTGVGKTEIARRLAKLAGAPFIKVEATKFTEVGYVGRDV 96 (444)
T ss_pred hcCcHHHHHHHHHHHHHHHHHHhcCHHHhhccCccceEEECCCCCcHHHHHHHHHHHhCCCeEEEEeeeeeecccccccH
Confidence 789999999988888776666555444332335689999999999999999999999999998875543311 1111
Q ss_pred --------------------------------------------------------------------------------
Q 001707 808 -------------------------------------------------------------------------------- 807 (1023)
Q Consensus 808 -------------------------------------------------------------------------------- 807 (1023)
T Consensus 97 esivRDLve~av~lvke~~~~~vk~~ae~~aeeRild~Lvp~~~~~~g~~~~~~~~~~~r~~~rkkLr~GeLdd~eIeie 176 (444)
T COG1220 97 ESIIRDLVEIAVKLVREEKIEKVKDKAEELAEERILDALVPPAKNFWGQSENKQESSATREKFRKKLREGELDDKEIEIE 176 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCcCcccccchHHHHHHHHHHHcCCCCccEEEEE
Confidence
Q ss_pred ------------------hHHHHHHHHHHHHhh---------------------------------------cCCeEEEe
Q 001707 808 ------------------DAEKLTKALFSFASK---------------------------------------LAPVIIFV 830 (1023)
Q Consensus 808 ------------------e~e~~I~~lF~~A~k---------------------------------------~~PsIIfI 830 (1023)
+....+..+|..+.. -+..||||
T Consensus 177 v~~~~~~~~~i~~~pgme~~~~~l~~m~~~~~~~kkkkrk~~Vk~A~~~L~~eea~KLid~e~i~~eAi~~aE~~GIvFI 256 (444)
T COG1220 177 VADKGPPGFEIMGPPGMEEMTNNLQDMFGNLGGKKKKKRKLKVKEAKKLLIEEEADKLIDQEEIKQEAIDAAEQNGIVFI 256 (444)
T ss_pred EeccCCCccccCCCCcHHHHHHHHHHHHHHhcCCCcceeeeeHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhcCeEEE
Confidence 011112222222110 02379999
Q ss_pred ccchhhhhccCCCchhHHHH-HHHHHHHhhhcCccC------CCCceEEEEEec----CCCCCCcHHHHhhcCCceeecC
Q 001707 831 DEVDSLLGARGGAFEHEATR-RMRNEFMSAWDGLRS------KESQKILILGAT----NRPFDLDDAVIRRLPRRIYVDL 899 (1023)
Q Consensus 831 DEID~L~~~r~~~~~~e~~~-ril~~LL~~Ldgl~~------~~~~~VlVIaTT----N~p~~Ld~aLlrRFd~~I~V~l 899 (1023)
||||.++.....+. ..+++ .+...||-.+.|-.- -....+++||+. ..|++|-|.|.-||+.++.+..
T Consensus 257 DEIDKIa~~~~~g~-~dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSDLiPELQGRfPIRVEL~~ 335 (444)
T COG1220 257 DEIDKIAKRGGSGG-PDVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSDLIPELQGRFPIRVELDA 335 (444)
T ss_pred ehhhHHHhcCCCCC-CCcchhhhcccccccccCceeeccccccccceEEEEecCceecCChhhcChhhcCCCceEEEccc
Confidence 99999987654222 13333 334456655554321 245679999886 6899999999999999999999
Q ss_pred CCHHHHHHHHH
Q 001707 900 PDAENRMKILR 910 (1023)
Q Consensus 900 Pd~eeR~~ILk 910 (1023)
.+.++-.+||.
T Consensus 336 Lt~~Df~rILt 346 (444)
T COG1220 336 LTKEDFERILT 346 (444)
T ss_pred CCHHHHHHHHc
Confidence 99988887764
No 197
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.87 E-value=1.3e-07 Score=105.87 Aligned_cols=91 Identities=21% Similarity=0.156 Sum_probs=63.7
Q ss_pred CCCCCcHHHHhhcCCceeecCCCHHHHHHHHHHHHhccccC-CccCHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHHH
Q 001707 879 RPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLE-SGFQFNELANATEGYSGSDLKNLCIAAAYRPVQELLEE 957 (1023)
Q Consensus 879 ~p~~Ld~aLlrRFd~~I~V~lPd~eeR~~ILk~~L~~~~l~-~dvdl~~LA~~TeGySgaDL~~L~~~Aa~~Airr~l~~ 957 (1023)
.|+.++..|++|. .+|...+.+.++..+|++..+....+. ++..++.|+....--|-+--.+|+.-|...|.++.
T Consensus 341 sPhGIP~DlLDRl-lII~t~py~~~EireIi~iRa~ee~i~l~~~Ale~L~~ig~etSLRYa~qLL~pa~iiA~~rg--- 416 (450)
T COG1224 341 SPHGIPLDLLDRL-LIISTRPYSREEIREIIRIRAKEEDIELSDDALEYLTDIGEETSLRYAVQLLTPASIIAKRRG--- 416 (450)
T ss_pred CCCCCCHhhhhhe-eEEecCCCCHHHHHHHHHHhhhhhccccCHHHHHHHHhhchhhhHHHHHHhccHHHHHHHHhC---
Confidence 5677999999998 677888889999999999998877665 44456777766655555555555554554444331
Q ss_pred HHHHHHhhCCCCCCCCcCCCCHHHHHHHHHhh
Q 001707 958 ERKLFIQRGKNDAAPVLRPLKLEDFIQSKAKV 989 (1023)
Q Consensus 958 e~~~~~~~~~~~~~~~~r~Lt~eDF~~Al~kv 989 (1023)
...+..+|+..|..-+
T Consensus 417 ----------------~~~V~~~dVe~a~~lF 432 (450)
T COG1224 417 ----------------SKRVEVEDVERAKELF 432 (450)
T ss_pred ----------------CCeeehhHHHHHHHHH
Confidence 1357888988887644
No 198
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.84 E-value=5e-08 Score=111.14 Aligned_cols=98 Identities=30% Similarity=0.477 Sum_probs=75.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccch-hhhhh-HHHHHHHHHHHH----hhcCCeEEEeccchhhhhc
Q 001707 766 KGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTS-KWFGD-AEKLTKALFSFA----SKLAPVIIFVDEVDSLLGA 839 (1023)
Q Consensus 766 ~gVLL~GPPGTGKT~LArAIA~elg~~fi~vs~seL~s-~~~ge-~e~~I~~lF~~A----~k~~PsIIfIDEID~L~~~ 839 (1023)
.+|||.||.|+|||.||+.+|+-+++||...+|..|.. .|+|+ .|..|.++...| .+.+..|+||||+|.|...
T Consensus 227 SNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~~ 306 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITKK 306 (564)
T ss_pred ccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhccc
Confidence 46999999999999999999999999999999999974 68885 488888888876 3557799999999999844
Q ss_pred cCCCch--hHHHHHHHHHHHhhhcCc
Q 001707 840 RGGAFE--HEATRRMRNEFMSAWDGL 863 (1023)
Q Consensus 840 r~~~~~--~e~~~ril~~LL~~Ldgl 863 (1023)
..+... .....-+.+.||.+++|-
T Consensus 307 ~~~i~~~RDVsGEGVQQaLLKllEGt 332 (564)
T KOG0745|consen 307 AESIHTSRDVSGEGVQQALLKLLEGT 332 (564)
T ss_pred CccccccccccchhHHHHHHHHhccc
Confidence 322111 112244566777777753
No 199
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=98.83 E-value=9.9e-08 Score=108.30 Aligned_cols=149 Identities=16% Similarity=0.132 Sum_probs=100.6
Q ss_pred ccccccC-hHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc--------------
Q 001707 728 RFDDIGA-LEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGAN-------------- 792 (1023)
Q Consensus 728 tfdDIgG-le~vk~~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~elg~~-------------- 792 (1023)
.|+.|.| .+.+++.|...+.. + +.++.+||+||+|+|||++|+++|+.+-..
T Consensus 3 ~~~~i~~~q~~~~~~L~~~~~~-----------~--~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c 69 (329)
T PRK08058 3 TWEQLTALQPVVVKMLQNSIAK-----------N--RLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNC 69 (329)
T ss_pred cHHHHHhhHHHHHHHHHHHHHc-----------C--CCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHH
Confidence 4777777 88899999887732 1 345678999999999999999999987321
Q ss_pred ----------EEEEeccccchhhhhhHHHHHHHHHHHHh----hcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHh
Q 001707 793 ----------FISITGSTLTSKWFGDAEKLTKALFSFAS----KLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMS 858 (1023)
Q Consensus 793 ----------fi~vs~seL~s~~~ge~e~~I~~lF~~A~----k~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~ 858 (1023)
+..+... +... .-..++.+-..+. ....-|++|||+|.+. ....|.|+.
T Consensus 70 ~~~~~~~hpD~~~i~~~---~~~i--~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~------------~~a~NaLLK 132 (329)
T PRK08058 70 KRIDSGNHPDVHLVAPD---GQSI--KKDQIRYLKEEFSKSGVESNKKVYIIEHADKMT------------ASAANSLLK 132 (329)
T ss_pred HHHhcCCCCCEEEeccc---cccC--CHHHHHHHHHHHhhCCcccCceEEEeehHhhhC------------HHHHHHHHH
Confidence 2222111 0100 1123333333322 2234699999999883 223467777
Q ss_pred hhcCccCCCCceEEEEEecCCCCCCcHHHHhhcCCceeecCCCHHHHHHHHHH
Q 001707 859 AWDGLRSKESQKILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRI 911 (1023)
Q Consensus 859 ~Ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~V~lPd~eeR~~ILk~ 911 (1023)
.|+.. +..+++|.+|+.+..|.+.+++|+ ..+.+.+|+.++...+|+.
T Consensus 133 ~LEEP----p~~~~~Il~t~~~~~ll~TIrSRc-~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 133 FLEEP----SGGTTAILLTENKHQILPTILSRC-QVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred HhcCC----CCCceEEEEeCChHhCcHHHHhhc-eeeeCCCCCHHHHHHHHHH
Confidence 77653 345666678888889999999999 6789999999888777753
No 200
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=98.81 E-value=1.6e-08 Score=104.60 Aligned_cols=115 Identities=24% Similarity=0.295 Sum_probs=76.5
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCC----cEEEEeccccchhhhhhHHHHHHHHHHHH----hhcCCeEEEeccchh
Q 001707 764 PCKGILLFGPPGTGKTLLAKALATEAGA----NFISITGSTLTSKWFGDAEKLTKALFSFA----SKLAPVIIFVDEVDS 835 (1023)
Q Consensus 764 p~~gVLL~GPPGTGKT~LArAIA~elg~----~fi~vs~seL~s~~~ge~e~~I~~lF~~A----~k~~PsIIfIDEID~ 835 (1023)
|...+||.||+|+|||.||+++|..+.. +++.++++++... ++.+..+..+...+ ......||||||||.
T Consensus 2 p~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~--~~~~~~~~~l~~~~~~~v~~~~~gVVllDEidK 79 (171)
T PF07724_consen 2 PKSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEG--DDVESSVSKLLGSPPGYVGAEEGGVVLLDEIDK 79 (171)
T ss_dssp -SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSH--HHCSCHCHHHHHHTTCHHHHHHHTEEEEETGGG
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhccccc--chHHhhhhhhhhcccceeeccchhhhhhHHHhh
Confidence 5567999999999999999999999996 9999999988761 11112222222211 111234999999999
Q ss_pred hhhccCCCchhHHHHHHHHHHHhhhcCccC-------CCCceEEEEEecCCCC
Q 001707 836 LLGARGGAFEHEATRRMRNEFMSAWDGLRS-------KESQKILILGATNRPF 881 (1023)
Q Consensus 836 L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~-------~~~~~VlVIaTTN~p~ 881 (1023)
..+. ...........+.+.||..|++-.- -.-.++++|+|+|--.
T Consensus 80 a~~~-~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~ 131 (171)
T PF07724_consen 80 AHPS-NSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGA 131 (171)
T ss_dssp CSHT-TTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSST
T ss_pred cccc-ccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEeccccc
Confidence 9765 2222344445677888888864321 1234789999998654
No 201
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=98.80 E-value=3.4e-09 Score=112.19 Aligned_cols=46 Identities=46% Similarity=0.713 Sum_probs=36.7
Q ss_pred ccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 001707 728 RFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEA 789 (1023)
Q Consensus 728 tfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~el 789 (1023)
.|+||.|++..|..|.-+.. + .++|||+||||||||++|+++...+
T Consensus 1 Df~dI~GQe~aKrAL~iAAa-----------G-----~h~lLl~GppGtGKTmlA~~l~~lL 46 (206)
T PF01078_consen 1 DFSDIVGQEEAKRALEIAAA-----------G-----GHHLLLIGPPGTGKTMLARRLPSLL 46 (206)
T ss_dssp -TCCSSSTHHHHHHHHHHHH-----------C-----C--EEEES-CCCTHHHHHHHHHHCS
T ss_pred ChhhhcCcHHHHHHHHHHHc-----------C-----CCCeEEECCCCCCHHHHHHHHHHhC
Confidence 37899999999999987652 2 2689999999999999999999765
No 202
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=98.79 E-value=7.1e-08 Score=109.32 Aligned_cols=66 Identities=38% Similarity=0.541 Sum_probs=45.4
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC--CcEEEEecccc
Q 001707 727 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAG--ANFISITGSTL 801 (1023)
Q Consensus 727 vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~elg--~~fi~vs~seL 801 (1023)
...+.++|+.+++++.--.+.+- +.+ .-..++|||.||||||||+||-++|+++| .||+.++++++
T Consensus 21 ~~~~GlVGQ~~AReAagiiv~mI--------k~~-K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEi 88 (398)
T PF06068_consen 21 YIADGLVGQEKAREAAGIIVDMI--------KEG-KIAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEI 88 (398)
T ss_dssp SEETTEES-HHHHHHHHHHHHHH--------HTT---TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG
T ss_pred eccccccChHHHHHHHHHHHHHH--------hcc-cccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEccccee
Confidence 34567899999998887666542 111 12347899999999999999999999996 67766655544
No 203
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=98.79 E-value=8.8e-08 Score=116.75 Aligned_cols=51 Identities=27% Similarity=0.414 Sum_probs=43.0
Q ss_pred CcccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc
Q 001707 726 GVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGAN 792 (1023)
Q Consensus 726 ~vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~elg~~ 792 (1023)
..-|+++.|.++++..++..+.. .++++|+||||||||++++++|..++..
T Consensus 14 ~~~~~~viG~~~a~~~l~~a~~~----------------~~~~ll~G~pG~GKT~la~~la~~l~~~ 64 (608)
T TIGR00764 14 ERLIDQVIGQEEAVEIIKKAAKQ----------------KRNVLLIGEPGVGKSMLAKAMAELLPDE 64 (608)
T ss_pred hhhHhhccCHHHHHHHHHHHHHc----------------CCCEEEECCCCCCHHHHHHHHHHHcCch
Confidence 35688999999999999887732 1379999999999999999999998643
No 204
>PRK04132 replication factor C small subunit; Provisional
Probab=98.78 E-value=6.9e-08 Score=120.28 Aligned_cols=160 Identities=22% Similarity=0.210 Sum_probs=115.2
Q ss_pred CCceEEEEc--CCCChHHHHHHHHHHHh-----CCcEEEEeccccchhhhhhHHHHHHHHHHHHhhc------CCeEEEe
Q 001707 764 PCKGILLFG--PPGTGKTLLAKALATEA-----GANFISITGSTLTSKWFGDAEKLTKALFSFASKL------APVIIFV 830 (1023)
Q Consensus 764 p~~gVLL~G--PPGTGKT~LArAIA~el-----g~~fi~vs~seL~s~~~ge~e~~I~~lF~~A~k~------~PsIIfI 830 (1023)
|.-+-+..| |++.|||++|+++|+++ +.+++.+++++..+. ..++.+...+... +..||||
T Consensus 563 ~~~~~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rgi------d~IR~iIk~~a~~~~~~~~~~KVvII 636 (846)
T PRK04132 563 PGYHNFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERGI------NVIREKVKEFARTKPIGGASFKIIFL 636 (846)
T ss_pred CchhhhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcccH------HHHHHHHHHHHhcCCcCCCCCEEEEE
Confidence 444556778 99999999999999998 568999999875331 2333333332221 2369999
Q ss_pred ccchhhhhccCCCchhHHHHHHHHHHHhhhcCccCCCCceEEEEEecCCCCCCcHHHHhhcCCceeecCCCHHHHHHHHH
Q 001707 831 DEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILR 910 (1023)
Q Consensus 831 DEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~V~lPd~eeR~~ILk 910 (1023)
||+|.|.. ...+.|+..|+.. ...+.+|.+||.++.+.+++++|| ..+.|++|+.++....++
T Consensus 637 DEaD~Lt~------------~AQnALLk~lEep----~~~~~FILi~N~~~kIi~tIrSRC-~~i~F~~ls~~~i~~~L~ 699 (846)
T PRK04132 637 DEADALTQ------------DAQQALRRTMEMF----SSNVRFILSCNYSSKIIEPIQSRC-AIFRFRPLRDEDIAKRLR 699 (846)
T ss_pred ECcccCCH------------HHHHHHHHHhhCC----CCCeEEEEEeCChhhCchHHhhhc-eEEeCCCCCHHHHHHHHH
Confidence 99999842 1245566666542 346888999999999999999998 688999999999999999
Q ss_pred HHHhccccC-CccCHHHHHHHccCCcHHHHHHHHHHHH
Q 001707 911 IFLAHESLE-SGFQFNELANATEGYSGSDLKNLCIAAA 947 (1023)
Q Consensus 911 ~~L~~~~l~-~dvdl~~LA~~TeGySgaDL~~L~~~Aa 947 (1023)
.++..+++. ++..+..|+..++| +.+...++++.++
T Consensus 700 ~I~~~Egi~i~~e~L~~Ia~~s~G-DlR~AIn~Lq~~~ 736 (846)
T PRK04132 700 YIAENEGLELTEEGLQAILYIAEG-DMRRAINILQAAA 736 (846)
T ss_pred HHHHhcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 888776653 45567888888887 4444445555443
No 205
>smart00350 MCM minichromosome maintenance proteins.
Probab=98.77 E-value=6.5e-08 Score=115.82 Aligned_cols=167 Identities=23% Similarity=0.265 Sum_probs=98.0
Q ss_pred cccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-EEEE---eccccchhhh
Q 001707 731 DIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGAN-FISI---TGSTLTSKWF 806 (1023)
Q Consensus 731 DIgGle~vk~~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~elg~~-fi~v---s~seL~s~~~ 806 (1023)
+|.|.+.+|..+.-.+..-. ......+..++...+|||+|+||||||++|++++..+... |+.. ++..+.....
T Consensus 204 ~i~G~~~~k~~l~l~l~gg~--~~~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~~ 281 (509)
T smart00350 204 SIYGHEDIKKAILLLLFGGV--HKNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVT 281 (509)
T ss_pred cccCcHHHHHHHHHHHhCCC--ccccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccce
Confidence 46788888887765553211 0111112223344589999999999999999999987533 3221 2212211110
Q ss_pred hhH---HHHH-HHHHHHHhhcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhc---------CccCCCCceEEE
Q 001707 807 GDA---EKLT-KALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWD---------GLRSKESQKILI 873 (1023)
Q Consensus 807 ge~---e~~I-~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ld---------gl~~~~~~~VlV 873 (1023)
... +..+ ...+ ......+++|||++.+... . ...|+..|+ |....-+.+..|
T Consensus 282 ~~~~~g~~~~~~G~l---~~A~~Gil~iDEi~~l~~~--------~----q~~L~e~me~~~i~i~k~G~~~~l~~~~~v 346 (509)
T smart00350 282 RDPETREFTLEGGAL---VLADNGVCCIDEFDKMDDS--------D----RTAIHEAMEQQTISIAKAGITTTLNARCSV 346 (509)
T ss_pred EccCcceEEecCccE---EecCCCEEEEechhhCCHH--------H----HHHHHHHHhcCEEEEEeCCEEEEecCCcEE
Confidence 000 0000 0001 1124579999999998322 1 222233332 222222357889
Q ss_pred EEecCCCC-------------CCcHHHHhhcCCcee-ecCCCHHHHHHHHHHHHh
Q 001707 874 LGATNRPF-------------DLDDAVIRRLPRRIY-VDLPDAENRMKILRIFLA 914 (1023)
Q Consensus 874 IaTTN~p~-------------~Ld~aLlrRFd~~I~-V~lPd~eeR~~ILk~~L~ 914 (1023)
|||+|+.+ .|++++++||+..+. .+.|+.+...+|.++.+.
T Consensus 347 iAa~NP~~g~y~~~~~~~~n~~l~~~lLsRFdLi~~~~d~~~~~~d~~i~~~i~~ 401 (509)
T smart00350 347 LAAANPIGGRYDPKLTPEENIDLPAPILSRFDLLFVVLDEVDEERDRELAKHVVD 401 (509)
T ss_pred EEEeCCCCcccCCCcChhhccCCChHHhCceeeEEEecCCCChHHHHHHHHHHHH
Confidence 99999753 599999999987655 467999999999988764
No 206
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=98.77 E-value=7.5e-08 Score=102.46 Aligned_cols=173 Identities=23% Similarity=0.298 Sum_probs=108.6
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-CC----cEEEEecccc
Q 001707 727 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEA-GA----NFISITGSTL 801 (1023)
Q Consensus 727 vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~el-g~----~fi~vs~seL 801 (1023)
..+.||+|.++..+.|.-+. +.| .-++++|.||||||||+-+.++|+++ |- -+..+++++-
T Consensus 24 ~~l~dIVGNe~tv~rl~via-----------~~g---nmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASde 89 (333)
T KOG0991|consen 24 SVLQDIVGNEDTVERLSVIA-----------KEG---NMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDE 89 (333)
T ss_pred hHHHHhhCCHHHHHHHHHHH-----------HcC---CCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCccc
Confidence 45789999999999997655 223 12479999999999999999999998 32 3456666553
Q ss_pred chhhhhhHHHHHHHHHHHHh-hcCC---eEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhcCccCCCCceEEEEEec
Q 001707 802 TSKWFGDAEKLTKALFSFAS-KLAP---VIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGAT 877 (1023)
Q Consensus 802 ~s~~~ge~e~~I~~lF~~A~-k~~P---sIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~~~~~VlVIaTT 877 (1023)
.+- +.-..--+.|..-+ ..+| -||++||+|++... ...+.++.+.-. ++ ...+..++
T Consensus 90 RGI---DvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT~g-----AQQAlRRtMEiy--------S~---ttRFalaC 150 (333)
T KOG0991|consen 90 RGI---DVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTAG-----AQQALRRTMEIY--------SN---TTRFALAC 150 (333)
T ss_pred ccc---HHHHHHHHHHHHhhccCCCCceeEEEeeccchhhhH-----HHHHHHHHHHHH--------cc---cchhhhhh
Confidence 321 11122223344332 2233 49999999998522 234445544222 12 23466688
Q ss_pred CCCCCCcHHHHhhcCCceeecCCCHHHHHHHHHHHHhccccC-CccCHHHHHHHccC
Q 001707 878 NRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLE-SGFQFNELANATEG 933 (1023)
Q Consensus 878 N~p~~Ld~aLlrRFd~~I~V~lPd~eeR~~ILk~~L~~~~l~-~dvdl~~LA~~TeG 933 (1023)
|....+-+.+.+|+. .+.+...+..+...-+....+.+.+. .+.-++.+.-..+|
T Consensus 151 N~s~KIiEPIQSRCA-iLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaiifta~G 206 (333)
T KOG0991|consen 151 NQSEKIIEPIQSRCA-ILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAIIFTAQG 206 (333)
T ss_pred cchhhhhhhHHhhhH-hhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhhhhccc
Confidence 999999999999884 56666666666555555555544443 33345555555555
No 207
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=98.73 E-value=2.3e-07 Score=105.16 Aligned_cols=195 Identities=22% Similarity=0.242 Sum_probs=113.6
Q ss_pred ccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccchh
Q 001707 728 RFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEA---GANFISITGSTLTSK 804 (1023)
Q Consensus 728 tfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~el---g~~fi~vs~seL~s~ 804 (1023)
.+++++|.....+.+.+.+... . ....+|||+|++||||+++|++|.... +.+|+.++|..+...
T Consensus 4 ~~~~liG~S~~~~~~~~~i~~~-------a-----~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~ 71 (326)
T PRK11608 4 YKDNLLGEANSFLEVLEQVSRL-------A-----PLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNEN 71 (326)
T ss_pred ccCccEECCHHHHHHHHHHHHH-------h-----CCCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHH
Confidence 4667888887777777766432 1 123469999999999999999998765 469999999886422
Q ss_pred -----hhhhHH-------HHHHHHHHHHhhcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhcCcc-------C
Q 001707 805 -----WFGDAE-------KLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLR-------S 865 (1023)
Q Consensus 805 -----~~ge~e-------~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~-------~ 865 (1023)
++|... ......|. ......||||||+.|... . ...|+..++.-. .
T Consensus 72 ~~~~~lfg~~~~~~~g~~~~~~g~l~---~a~gGtL~l~~i~~L~~~--------~----Q~~L~~~l~~~~~~~~g~~~ 136 (326)
T PRK11608 72 LLDSELFGHEAGAFTGAQKRHPGRFE---RADGGTLFLDELATAPML--------V----QEKLLRVIEYGELERVGGSQ 136 (326)
T ss_pred HHHHHHccccccccCCcccccCCchh---ccCCCeEEeCChhhCCHH--------H----HHHHHHHHhcCcEEeCCCCc
Confidence 111100 00011222 224579999999998422 2 223333332211 0
Q ss_pred CCCceEEEEEecCCC-------CCCcHHHHhhcCCceeecCCCHHHHHH----HHHHHHhcc----ccC--CccCHHHHH
Q 001707 866 KESQKILILGATNRP-------FDLDDAVIRRLPRRIYVDLPDAENRMK----ILRIFLAHE----SLE--SGFQFNELA 928 (1023)
Q Consensus 866 ~~~~~VlVIaTTN~p-------~~Ld~aLlrRFd~~I~V~lPd~eeR~~----ILk~~L~~~----~l~--~dvdl~~LA 928 (1023)
.....+.||+||+.. ..+.+.|..||. .+.+..|...+|.+ ++.+++... +.. ..++-+.+.
T Consensus 137 ~~~~~~RiI~~s~~~l~~l~~~g~f~~dL~~~l~-~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~~s~~al~ 215 (326)
T PRK11608 137 PLQVNVRLVCATNADLPAMVAEGKFRADLLDRLA-FDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPLFPGFTERARE 215 (326)
T ss_pred eeeccEEEEEeCchhHHHHHHcCCchHHHHHhcC-CCEEECCChhhhhhhHHHHHHHHHHHHHHHhCCCCCCCCCHHHHH
Confidence 111247788887653 346678888884 35566677666644 444544322 111 223333333
Q ss_pred HHcc-C--CcHHHHHHHHHHHHHHH
Q 001707 929 NATE-G--YSGSDLKNLCIAAAYRP 950 (1023)
Q Consensus 929 ~~Te-G--ySgaDL~~L~~~Aa~~A 950 (1023)
.... . -+.++|+++++.|+..+
T Consensus 216 ~L~~y~WPGNvrEL~~vl~~a~~~~ 240 (326)
T PRK11608 216 TLLNYRWPGNIRELKNVVERSVYRH 240 (326)
T ss_pred HHHhCCCCcHHHHHHHHHHHHHHhc
Confidence 3222 2 25689999988887643
No 208
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.72 E-value=3e-07 Score=112.01 Aligned_cols=196 Identities=14% Similarity=0.169 Sum_probs=113.1
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEE-Eecc---cc-
Q 001707 727 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFIS-ITGS---TL- 801 (1023)
Q Consensus 727 vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~elg~~fi~-vs~s---eL- 801 (1023)
.+++|+.|.+..++.|+.++.... .+ ..+...++|+||||||||++++.+|.+++..++. ++.. ..
T Consensus 81 ~~ldel~~~~~ki~~l~~~l~~~~--------~~-~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~npv~~~~~~ 151 (637)
T TIGR00602 81 ETQHELAVHKKKIEEVETWLKAQV--------LE-NAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWSNPTLPDFQK 151 (637)
T ss_pred CCHHHhcCcHHHHHHHHHHHHhcc--------cc-cCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhhhhhhcccc
Confidence 578999999999999988874321 11 2334469999999999999999999999876543 1110 00
Q ss_pred ------------chhhhhhHHHHHHHHHHHHh----------hcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHh-
Q 001707 802 ------------TSKWFGDAEKLTKALFSFAS----------KLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMS- 858 (1023)
Q Consensus 802 ------------~s~~~ge~e~~I~~lF~~A~----------k~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~- 858 (1023)
+..+ .........+...+. .....|||||||+.++.. . . ..+..++.
T Consensus 152 ~~~~~~~s~~~~~~~~-~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r-~----~----~~lq~lLr~ 221 (637)
T TIGR00602 152 NDHKVTLSLESCFSNF-QSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYR-D----T----RALHEILRW 221 (637)
T ss_pred cccccchhhhhccccc-cchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchh-h----H----HHHHHHHHH
Confidence 0001 112233333444443 124679999999987522 1 1 12333333
Q ss_pred hhcCccCCCCceEEEEEecCCCC----------C----CcHHHHh--hcCCceeecCCCHHHHHHHHHHHHhccccC--C
Q 001707 859 AWDGLRSKESQKILILGATNRPF----------D----LDDAVIR--RLPRRIYVDLPDAENRMKILRIFLAHESLE--S 920 (1023)
Q Consensus 859 ~Ldgl~~~~~~~VlVIaTTN~p~----------~----Ld~aLlr--RFd~~I~V~lPd~eeR~~ILk~~L~~~~l~--~ 920 (1023)
.... .+...+|+++|..+. . |.+++++ |. .+|.|++.+.....+.|+.++..+... .
T Consensus 222 ~~~e----~~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv-~~I~FnPia~t~l~K~L~rIl~~E~~~~~~ 296 (637)
T TIGR00602 222 KYVS----IGRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRV-SNISFNPIAPTIMKKFLNRIVTIEAKKNGE 296 (637)
T ss_pred Hhhc----CCCceEEEEecCCccccccccccccchhcccCHhHhcccce-eEEEeCCCCHHHHHHHHHHHHHhhhhcccc
Confidence 1111 111223333332221 1 4467876 44 468899999999888888888754321 1
Q ss_pred ------ccCHHHHHHHccCCcHHHHHHHHHHHHHHH
Q 001707 921 ------GFQFNELANATEGYSGSDLKNLCIAAAYRP 950 (1023)
Q Consensus 921 ------dvdl~~LA~~TeGySgaDL~~L~~~Aa~~A 950 (1023)
...+..|+.... +||+.++..--+.+
T Consensus 297 ~~~~p~~~~l~~I~~~s~----GDiRsAIn~LQf~~ 328 (637)
T TIGR00602 297 KIKVPKKTSVELLCQGCS----GDIRSAINSLQFSS 328 (637)
T ss_pred ccccCCHHHHHHHHHhCC----ChHHHHHHHHHHHH
Confidence 124555665444 58887776544443
No 209
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=98.71 E-value=1.1e-07 Score=114.34 Aligned_cols=193 Identities=19% Similarity=0.206 Sum_probs=115.0
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccch
Q 001707 727 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEA---GANFISITGSTLTS 803 (1023)
Q Consensus 727 vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~el---g~~fi~vs~seL~s 803 (1023)
.+|++++|.....+.+.+.+... .....+|||+|++||||+++|++|...+ +.+|+.++|..+..
T Consensus 193 ~~~~~liG~s~~~~~~~~~~~~~------------a~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~~ 260 (534)
T TIGR01817 193 GKEDGIIGKSPAMRQVVDQARVV------------ARSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSE 260 (534)
T ss_pred CccCceEECCHHHHHHHHHHHHH------------hCcCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCCH
Confidence 56788899888888887776442 1223469999999999999999999886 57999999988743
Q ss_pred hhhhhHHHHHHHHHHHH---------------hhcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhcCcc--C-
Q 001707 804 KWFGDAEKLTKALFSFA---------------SKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLR--S- 865 (1023)
Q Consensus 804 ~~~ge~e~~I~~lF~~A---------------~k~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~--~- 865 (1023)
.... ..+|... ......+||||||+.|... . ...|+..++.-. .
T Consensus 261 ~~~~------~~lfg~~~~~~~~~~~~~~g~~~~a~~GtL~ldei~~L~~~--------~----Q~~Ll~~l~~~~~~~~ 322 (534)
T TIGR01817 261 TLLE------SELFGHEKGAFTGAIAQRKGRFELADGGTLFLDEIGEISPA--------F----QAKLLRVLQEGEFERV 322 (534)
T ss_pred HHHH------HHHcCCCCCccCCCCcCCCCcccccCCCeEEEechhhCCHH--------H----HHHHHHHHhcCcEEEC
Confidence 2211 1122211 1224579999999998422 2 223333332211 0
Q ss_pred ----CCCceEEEEEecCCC-------CCCcHHHHhhcCCceeecCCCHHHH----HHHHHHHHhccc----cCCccC---
Q 001707 866 ----KESQKILILGATNRP-------FDLDDAVIRRLPRRIYVDLPDAENR----MKILRIFLAHES----LESGFQ--- 923 (1023)
Q Consensus 866 ----~~~~~VlVIaTTN~p-------~~Ld~aLlrRFd~~I~V~lPd~eeR----~~ILk~~L~~~~----l~~dvd--- 923 (1023)
.....+.+|+||+.. ..+.+.|..|+. .+.+..|...+| ..++..++.... ....++
T Consensus 323 ~~~~~~~~~~riI~~s~~~l~~~~~~~~f~~~L~~rl~-~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~~~~~~s~~a 401 (534)
T TIGR01817 323 GGNRTLKVDVRLVAATNRDLEEAVAKGEFRADLYYRIN-VVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPLTITPSA 401 (534)
T ss_pred CCCceEeecEEEEEeCCCCHHHHHHcCCCCHHHHHHhc-CCeeeCCCcccccccHHHHHHHHHHHHHHHcCCCCCCCHHH
Confidence 011246788888653 235566777774 345555655444 345555554322 112233
Q ss_pred HHHHHHHccCCcHHHHHHHHHHHHHHH
Q 001707 924 FNELANATEGYSGSDLKNLCIAAAYRP 950 (1023)
Q Consensus 924 l~~LA~~TeGySgaDL~~L~~~Aa~~A 950 (1023)
+..|....=--+.++|+++++.|+..+
T Consensus 402 ~~~L~~~~WPGNvrEL~~v~~~a~~~~ 428 (534)
T TIGR01817 402 IRVLMSCKWPGNVRELENCLERTATLS 428 (534)
T ss_pred HHHHHhCCCCChHHHHHHHHHHHHHhC
Confidence 233333221226699999998887654
No 210
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=98.70 E-value=4.8e-07 Score=102.79 Aligned_cols=169 Identities=20% Similarity=0.272 Sum_probs=97.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccchhhhhh-----HH-------HHHHHHHHHHhhcCCeEEEe
Q 001707 766 KGILLFGPPGTGKTLLAKALATEA---GANFISITGSTLTSKWFGD-----AE-------KLTKALFSFASKLAPVIIFV 830 (1023)
Q Consensus 766 ~gVLL~GPPGTGKT~LArAIA~el---g~~fi~vs~seL~s~~~ge-----~e-------~~I~~lF~~A~k~~PsIIfI 830 (1023)
.+|||+|++||||+++|++|.... +.||+.++|..+....... .. ......|..| ..++|||
T Consensus 23 ~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~lfG~~~g~~~ga~~~~~G~~~~a---~gGtL~L 99 (329)
T TIGR02974 23 RPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSELFGHEAGAFTGAQKRHQGRFERA---DGGTLFL 99 (329)
T ss_pred CCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHHHhccccccccCcccccCCchhhC---CCCEEEe
Confidence 469999999999999999998766 4799999998764322110 00 0001112322 4689999
Q ss_pred ccchhhhhccCCCchhHHHHHHHHHHHhhhcCcc-------CCCCceEEEEEecCCC-------CCCcHHHHhhcCCcee
Q 001707 831 DEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLR-------SKESQKILILGATNRP-------FDLDDAVIRRLPRRIY 896 (1023)
Q Consensus 831 DEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~-------~~~~~~VlVIaTTN~p-------~~Ld~aLlrRFd~~I~ 896 (1023)
|||+.|... . ...|+..++.-. ......+.||++|+.. ..+.+.|..|+. .+.
T Consensus 100 dei~~L~~~--------~----Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~~l~~~~~~g~fr~dL~~rl~-~~~ 166 (329)
T TIGR02974 100 DELATASLL--------V----QEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNADLPALAAEGRFRADLLDRLA-FDV 166 (329)
T ss_pred CChHhCCHH--------H----HHHHHHHHHcCcEEecCCCceeccceEEEEechhhHHHHhhcCchHHHHHHHhc-chh
Confidence 999998422 2 223333332110 1112357788888653 235677778884 345
Q ss_pred ecCCCHHHHHH----HHHHHHhcc----ccC--CccCHHHHHHHcc---CCcHHHHHHHHHHHHHHH
Q 001707 897 VDLPDAENRMK----ILRIFLAHE----SLE--SGFQFNELANATE---GYSGSDLKNLCIAAAYRP 950 (1023)
Q Consensus 897 V~lPd~eeR~~----ILk~~L~~~----~l~--~dvdl~~LA~~Te---GySgaDL~~L~~~Aa~~A 950 (1023)
+..|...+|.+ +++.++... +.. ..++-+.+..... --+.++|+++++.|+..+
T Consensus 167 i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvrEL~n~i~~~~~~~ 233 (329)
T TIGR02974 167 ITLPPLRERQEDIMLLAEHFAIRMARELGLPLFPGFTPQAREQLLEYHWPGNVRELKNVVERSVYRH 233 (329)
T ss_pred cCCCchhhhhhhHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHhCCCCchHHHHHHHHHHHHHhC
Confidence 66666666544 444444322 111 1233333332222 225688999888887754
No 211
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.68 E-value=1e-06 Score=101.73 Aligned_cols=232 Identities=19% Similarity=0.191 Sum_probs=146.2
Q ss_pred cccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEeccccchh-
Q 001707 731 DIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEA-----GANFISITGSTLTSK- 804 (1023)
Q Consensus 731 DIgGle~vk~~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~el-----g~~fi~vs~seL~s~- 804 (1023)
.+.|.+..+..+++++..++.. ..+.++.+.|.||||||.+..-+.... +...++++|.++...
T Consensus 151 ~l~gRe~e~~~v~~F~~~hle~----------~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~ 220 (529)
T KOG2227|consen 151 TLKGRELEMDIVREFFSLHLEL----------NTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEAS 220 (529)
T ss_pred CccchHHHHHHHHHHHHhhhhc----------ccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchH
Confidence 4668888899999988776543 233579999999999999999877665 235578888764221
Q ss_pred -----hhh---------hHHHHHHHHHHH-Hhhc-CCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhcCccCCCC
Q 001707 805 -----WFG---------DAEKLTKALFSF-ASKL-APVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKES 868 (1023)
Q Consensus 805 -----~~g---------e~e~~I~~lF~~-A~k~-~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~~~ 868 (1023)
..+ ..+......|.. .... .+-||++||+|.|+...+ +.+..+..+...++
T Consensus 221 aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~-------------~vLy~lFewp~lp~ 287 (529)
T KOG2227|consen 221 AIFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQ-------------TVLYTLFEWPKLPN 287 (529)
T ss_pred HHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhccc-------------ceeeeehhcccCCc
Confidence 111 112122223332 1222 478999999999984432 22333334444467
Q ss_pred ceEEEEEecCCCCCCcHHHHh------hcCCceeecCCCHHHHHHHHHHHHhccccCCc--cCHHHHHHHccCCcHHHHH
Q 001707 869 QKILILGATNRPFDLDDAVIR------RLPRRIYVDLPDAENRMKILRIFLAHESLESG--FQFNELANATEGYSGSDLK 940 (1023)
Q Consensus 869 ~~VlVIaTTN~p~~Ld~aLlr------RFd~~I~V~lPd~eeR~~ILk~~L~~~~l~~d--vdl~~LA~~TeGySgaDL~ 940 (1023)
.++++||.+|..+.-|..|.+ .-+..+.|++++.++..+||+..+........ ..++-.|....|.|| |++
T Consensus 288 sr~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SG-DlR 366 (529)
T KOG2227|consen 288 SRIILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSG-DLR 366 (529)
T ss_pred ceeeeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCch-hHH
Confidence 799999999998876665554 23567899999999999999999887664433 346778888888775 555
Q ss_pred HH---HHHHHHHHHHHHHHHHHHHH-HhhCCCCCC-CCcCCCCHHHHHHHHHhhCC
Q 001707 941 NL---CIAAAYRPVQELLEEERKLF-IQRGKNDAA-PVLRPLKLEDFIQSKAKVGP 991 (1023)
Q Consensus 941 ~L---~~~Aa~~Airr~l~~e~~~~-~~~~~~~~~-~~~r~Lt~eDF~~Al~kv~P 991 (1023)
.+ |+.|.. +.+.+.+.. ......... ....+|.++++..++.++--
T Consensus 367 kaLdv~R~aiE-----I~E~e~r~~~~~~l~~~~~p~~~~~v~~~~va~viSk~~~ 417 (529)
T KOG2227|consen 367 KALDVCRRAIE-----IAEIEKRKILDDPLSPGTSPEKKKKVGVEHVAAVISKVDG 417 (529)
T ss_pred HHHHHHHHHHH-----HHHHHHhhccccCCCCCCCcccccccchHHHHHHhhhhcc
Confidence 44 444333 223233221 111111111 12256778999888877643
No 212
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=98.67 E-value=6.3e-07 Score=107.41 Aligned_cols=227 Identities=17% Similarity=0.185 Sum_probs=143.3
Q ss_pred cChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEEeccccc
Q 001707 733 GALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEA----------GANFISITGSTLT 802 (1023)
Q Consensus 733 gGle~vk~~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~el----------g~~fi~vs~seL~ 802 (1023)
-+.+....++..++...+.. + .+ ...+++.|.||||||.++..+-.++ .+.|+.+++-.|.
T Consensus 399 pcRe~E~~~I~~f~~~~i~~-~---~~-----g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~ 469 (767)
T KOG1514|consen 399 PCRENEFSEIEDFLRSFISD-Q---GL-----GSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLA 469 (767)
T ss_pred cchhHHHHHHHHHHHhhcCC-C---CC-----ceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeec
Confidence 34566666666666543322 0 11 1358999999999999999998865 4678888876664
Q ss_pred hh----------hhhh------HHHHHHHHHHHH-hhcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhcCccC
Q 001707 803 SK----------WFGD------AEKLTKALFSFA-SKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRS 865 (1023)
Q Consensus 803 s~----------~~ge------~e~~I~~lF~~A-~k~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~ 865 (1023)
+. +.|+ .-..+..-|... .+..++||+|||+|.|+...+ ..|..+-....
T Consensus 470 ~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~Q-------------dVlYn~fdWpt 536 (767)
T KOG1514|consen 470 SPREIYEKIWEALSGERVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQ-------------DVLYNIFDWPT 536 (767)
T ss_pred CHHHHHHHHHHhcccCcccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccH-------------HHHHHHhcCCc
Confidence 32 1111 122333444421 244689999999999986542 22333333445
Q ss_pred CCCceEEEEEecCCCCCCcH----HHHhhcC-CceeecCCCHHHHHHHHHHHHhccccCCccCHHHHHHHccCCcH--HH
Q 001707 866 KESQKILILGATNRPFDLDD----AVIRRLP-RRIYVDLPDAENRMKILRIFLAHESLESGFQFNELANATEGYSG--SD 938 (1023)
Q Consensus 866 ~~~~~VlVIaTTN~p~~Ld~----aLlrRFd-~~I~V~lPd~eeR~~ILk~~L~~~~l~~dvdl~~LA~~TeGySg--aD 938 (1023)
.++.+++||+.+|..+.... .+-+|.+ .+|.|.+.+.++..+|+...+..........++-+|+.....|| +.
T Consensus 537 ~~~sKLvvi~IaNTmdlPEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRr 616 (767)
T KOG1514|consen 537 LKNSKLVVIAIANTMDLPERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARR 616 (767)
T ss_pred CCCCceEEEEecccccCHHHHhccchhhhccceeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHH
Confidence 56788999999987654332 2223543 35788999999999999999887654444445556666666665 34
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCcCCCCHHHHHHHHHhhCCCc
Q 001707 939 LKNLCIAAAYRPVQELLEEERKLFIQRGKNDAAPVLRPLKLEDFIQSKAKVGPSV 993 (1023)
Q Consensus 939 L~~L~~~Aa~~Airr~l~~e~~~~~~~~~~~~~~~~r~Lt~eDF~~Al~kv~PSv 993 (1023)
...+|++|+..|-.+... ........|++.|+.+|++++..+.
T Consensus 617 aldic~RA~Eia~~~~~~------------~k~~~~q~v~~~~v~~Ai~em~~~~ 659 (767)
T KOG1514|consen 617 ALDICRRAAEIAEERNVK------------GKLAVSQLVGILHVMEAINEMLASP 659 (767)
T ss_pred HHHHHHHHHHHhhhhccc------------ccccccceeehHHHHHHHHHHhhhh
Confidence 445677777666544320 0111224688999999999886543
No 213
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.67 E-value=9e-08 Score=110.35 Aligned_cols=197 Identities=20% Similarity=0.250 Sum_probs=116.1
Q ss_pred CcccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEecccc
Q 001707 726 GVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEA----GANFISITGSTL 801 (1023)
Q Consensus 726 ~vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~el----g~~fi~vs~seL 801 (1023)
...+++++|-....+.+++.+.. +... ..+|||+|++||||+.+|++|.... +.|||.++|+.+
T Consensus 74 ~~~~~~LIG~~~~~~~~~eqik~-------~ap~-----~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~ 141 (403)
T COG1221 74 SEALDDLIGESPSLQELREQIKA-------YAPS-----GLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAY 141 (403)
T ss_pred chhhhhhhccCHHHHHHHHHHHh-------hCCC-----CCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHh
Confidence 34577888888777777776633 2222 3579999999999999999997543 569999999887
Q ss_pred chhhhhhH------------HHHHHHHHHHHhhcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhcC-----c-
Q 001707 802 TSKWFGDA------------EKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDG-----L- 863 (1023)
Q Consensus 802 ~s~~~ge~------------e~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldg-----l- 863 (1023)
........ ...-..+|..| ...+||+|||..+-... ...++..++. +
T Consensus 142 ~en~~~~eLFG~~kGaftGa~~~k~Glfe~A---~GGtLfLDEI~~LP~~~------------Q~kLl~~le~g~~~rvG 206 (403)
T COG1221 142 SENLQEAELFGHEKGAFTGAQGGKAGLFEQA---NGGTLFLDEIHRLPPEG------------QEKLLRVLEEGEYRRVG 206 (403)
T ss_pred CcCHHHHHHhccccceeecccCCcCchheec---CCCEEehhhhhhCCHhH------------HHHHHHHHHcCceEecC
Confidence 54322110 11111222222 34799999999984221 1233333432 1
Q ss_pred -cCCCCceEEEEEecCCC--CCCcH--HHHh-hcCCceeecCCCHHHHH----HHHHHHHh----ccccCCccCHHHHHH
Q 001707 864 -RSKESQKILILGATNRP--FDLDD--AVIR-RLPRRIYVDLPDAENRM----KILRIFLA----HESLESGFQFNELAN 929 (1023)
Q Consensus 864 -~~~~~~~VlVIaTTN~p--~~Ld~--aLlr-RFd~~I~V~lPd~eeR~----~ILk~~L~----~~~l~~dvdl~~LA~ 929 (1023)
.......|.+|++|+.. ..+-. .+.+ ++. +.|.+|...+|. .++.+++. +.......+..++..
T Consensus 207 ~~~~~~~dVRli~AT~~~l~~~~~~g~dl~~rl~~--~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~~~~a~~ 284 (403)
T COG1221 207 GSQPRPVDVRLICATTEDLEEAVLAGADLTRRLNI--LTITLPPLRERKEDILLLAEHFLKSEARRLGLPLSVDSPEALR 284 (403)
T ss_pred CCCCcCCCceeeeccccCHHHHHHhhcchhhhhcC--ceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHH
Confidence 11234568888888642 22333 4444 454 445556665553 34444444 333332233333333
Q ss_pred HccCC----cHHHHHHHHHHHHHHHH
Q 001707 930 ATEGY----SGSDLKNLCIAAAYRPV 951 (1023)
Q Consensus 930 ~TeGy----SgaDL~~L~~~Aa~~Ai 951 (1023)
....| +.++|+++++.++..+.
T Consensus 285 ~L~~y~~pGNirELkN~Ve~~~~~~~ 310 (403)
T COG1221 285 ALLAYDWPGNIRELKNLVERAVAQAS 310 (403)
T ss_pred HHHhCCCCCcHHHHHHHHHHHHHHhc
Confidence 33333 67999999999998875
No 214
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.67 E-value=1.1e-07 Score=105.33 Aligned_cols=74 Identities=26% Similarity=0.378 Sum_probs=61.7
Q ss_pred ccCCCcccccccccccccchhhHHHHHHhhhccccCccchhhccccccCCCCceeeccCCChhHHHHHHHHHHHhhcCCc
Q 001707 171 IVPWEKINISWDTFPYYINENTKSLLVECVGSHLKHKKFTATFGARLTSSSGRILLRSVPGTELYRERLIRALARELQVP 250 (1023)
Q Consensus 171 v~~~~~~~vsf~~fpyylse~tk~~L~~~~~~hl~~~~~~~~~~~~l~~~~~~iLL~~~~gsE~y~e~L~kAlA~~~~a~ 250 (1023)
++|+.+..=-|++.=|= -+-|+-|++-|.+-|+-.+. +-..+|-+-++=|||.|||| .+++.|.||||+++-++
T Consensus 131 ~LPa~eF~glWEsLiyd--s~lK~~ll~Ya~s~l~fsek--~vntnlIt~NRliLlhGPPG--TGKTSLCKaLaQkLSIR 204 (423)
T KOG0744|consen 131 YLPAAEFDGLWESLIYD--SNLKERLLSYAASALLFSEK--KVNTNLITWNRLILLHGPPG--TGKTSLCKALAQKLSIR 204 (423)
T ss_pred eccchhhhhhHHHHhhc--ccHHHHHHHHHHHHHHHHhc--CCCCceeeeeeEEEEeCCCC--CChhHHHHHHHHhheee
Confidence 45555555567776555 67899999999989988775 56689999999999999999 89999999999998887
No 215
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=98.67 E-value=2.6e-07 Score=112.45 Aligned_cols=136 Identities=21% Similarity=0.338 Sum_probs=87.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC--CcEEEEeccccchhhhhhH--HHHHH-H--HHH--HHhhcCCeEEEeccchhh
Q 001707 766 KGILLFGPPGTGKTLLAKALATEAG--ANFISITGSTLTSKWFGDA--EKLTK-A--LFS--FASKLAPVIIFVDEVDSL 836 (1023)
Q Consensus 766 ~gVLL~GPPGTGKT~LArAIA~elg--~~fi~vs~seL~s~~~ge~--e~~I~-~--lF~--~A~k~~PsIIfIDEID~L 836 (1023)
.+|||.|+||||||++|++++..+. .+|+.+.........+|.. +..+. . .|. ...+....+||||||+.+
T Consensus 17 g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~idl~~~~~~g~~~~~~G~L~~A~~GvL~lDEi~rl 96 (589)
T TIGR02031 17 GGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGIDVEESLAGGQRVTQPGLLDEAPRGVLYVDMANLL 96 (589)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccchhhhhhhhcCcccCCCCCeeeCCCCcEeccchhhC
Confidence 4799999999999999999999875 3688877532222233322 11000 0 000 000123469999999998
Q ss_pred hhccCCCchhHHHHHHHHHHHhhhc---------CccCCCCceEEEEEecCCCC---CCcHHHHhhcCCceeec-CCCHH
Q 001707 837 LGARGGAFEHEATRRMRNEFMSAWD---------GLRSKESQKILILGATNRPF---DLDDAVIRRLPRRIYVD-LPDAE 903 (1023)
Q Consensus 837 ~~~r~~~~~~e~~~ril~~LL~~Ld---------gl~~~~~~~VlVIaTTN~p~---~Ld~aLlrRFd~~I~V~-lPd~e 903 (1023)
.. .+.+.|+..|+ |.......++.||+|+|..+ .|.++++.||...+.+. .|+.+
T Consensus 97 ~~------------~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~LldRf~l~v~~~~~~~~~ 164 (589)
T TIGR02031 97 DD------------GLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLDRLALHVSLEDVASQD 164 (589)
T ss_pred CH------------HHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHHhccCeeecCCCCCHH
Confidence 42 22334444443 22112234688999998765 69999999999877765 46788
Q ss_pred HHHHHHHHHH
Q 001707 904 NRMKILRIFL 913 (1023)
Q Consensus 904 eR~~ILk~~L 913 (1023)
+|.+|++..+
T Consensus 165 er~eil~~~~ 174 (589)
T TIGR02031 165 LRVEIVRRER 174 (589)
T ss_pred HHHHHHHHHH
Confidence 8999998876
No 216
>PRK08116 hypothetical protein; Validated
Probab=98.66 E-value=8e-08 Score=106.16 Aligned_cols=130 Identities=20% Similarity=0.247 Sum_probs=74.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccchhhhhhH----HHHHHHHHHHHhhcCCeEEEeccchhhh
Q 001707 765 CKGILLFGPPGTGKTLLAKALATEA---GANFISITGSTLTSKWFGDA----EKLTKALFSFASKLAPVIIFVDEVDSLL 837 (1023)
Q Consensus 765 ~~gVLL~GPPGTGKT~LArAIA~el---g~~fi~vs~seL~s~~~ge~----e~~I~~lF~~A~k~~PsIIfIDEID~L~ 837 (1023)
..+++|+|++|||||+||.|||+++ +.+++.++.++++....... ......++... ....+|+|||+....
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l--~~~dlLviDDlg~e~ 191 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSL--VNADLLILDDLGAER 191 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHh--cCCCEEEEecccCCC
Confidence 3579999999999999999999986 78899998887765432211 01111222222 235799999996421
Q ss_pred hccCCCchhHHHHHHHHHHHhhhcCccCCCCceEEEEEecCCC-CC----CcHHHHhhc---CCceeecCCCHHHHHHHH
Q 001707 838 GARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRP-FD----LDDAVIRRL---PRRIYVDLPDAENRMKIL 909 (1023)
Q Consensus 838 ~~r~~~~~~e~~~ril~~LL~~Ldgl~~~~~~~VlVIaTTN~p-~~----Ld~aLlrRF---d~~I~V~lPd~eeR~~IL 909 (1023)
. .+ .....|...++..... ...+|.|||.+ .. ++..+.+|+ ...|.+.-|+ -|.++.
T Consensus 192 ~-------t~---~~~~~l~~iin~r~~~---~~~~IiTsN~~~~eL~~~~~~ri~sRl~e~~~~v~~~g~d--~R~~~~ 256 (268)
T PRK08116 192 D-------TE---WAREKVYNIIDSRYRK---GLPTIVTTNLSLEELKNQYGKRIYDRILEMCTPVENEGKS--YRKEIA 256 (268)
T ss_pred C-------CH---HHHHHHHHHHHHHHHC---CCCEEEECCCCHHHHHHHHhHHHHHHHHHcCEEEEeeCcC--hhHHHH
Confidence 0 11 1122333444432211 22366677754 33 456777774 2234444455 354444
Q ss_pred HH
Q 001707 910 RI 911 (1023)
Q Consensus 910 k~ 911 (1023)
+.
T Consensus 257 ~e 258 (268)
T PRK08116 257 KE 258 (268)
T ss_pred HH
Confidence 43
No 217
>PRK13531 regulatory ATPase RavA; Provisional
Probab=98.65 E-value=1.8e-07 Score=110.08 Aligned_cols=152 Identities=19% Similarity=0.248 Sum_probs=86.6
Q ss_pred ccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC--cEEEEecc-ccchhhhhh
Q 001707 732 IGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGA--NFISITGS-TLTSKWFGD 808 (1023)
Q Consensus 732 IgGle~vk~~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~elg~--~fi~vs~s-eL~s~~~ge 808 (1023)
|.|.+++++.+...+. ...+|||+||||||||++|++++..++. +|..+.+. ....+.+|.
T Consensus 22 i~gre~vI~lll~aal----------------ag~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG~ 85 (498)
T PRK13531 22 LYERSHAIRLCLLAAL----------------SGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGP 85 (498)
T ss_pred ccCcHHHHHHHHHHHc----------------cCCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcCc
Confidence 4567777777766541 1247999999999999999999998743 44433322 111222332
Q ss_pred H-HHHH--HHHHHHHhhc---CCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhcCcc-------CCCCceEEEEE
Q 001707 809 A-EKLT--KALFSFASKL---APVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLR-------SKESQKILILG 875 (1023)
Q Consensus 809 ~-e~~I--~~lF~~A~k~---~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~-------~~~~~~VlVIa 875 (1023)
. -... ...|...... ...+||+|||..+. ..+.+.|+..|..-. .+-+.+++|+
T Consensus 86 l~i~~~~~~g~f~r~~~G~L~~A~lLfLDEI~ras------------p~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~- 152 (498)
T PRK13531 86 LSIQALKDEGRYQRLTSGYLPEAEIVFLDEIWKAG------------PAILNTLLTAINERRFRNGAHEEKIPMRLLVT- 152 (498)
T ss_pred HHHhhhhhcCchhhhcCCccccccEEeecccccCC------------HHHHHHHHHHHHhCeEecCCeEEeCCCcEEEE-
Confidence 1 0000 1122211111 23499999998653 334455666552211 1112244444
Q ss_pred ecCCCC---CCcHHHHhhcCCceeecCCC-HHHHHHHHHHH
Q 001707 876 ATNRPF---DLDDAVIRRLPRRIYVDLPD-AENRMKILRIF 912 (1023)
Q Consensus 876 TTN~p~---~Ld~aLlrRFd~~I~V~lPd-~eeR~~ILk~~ 912 (1023)
|||... ...+++..||-..+.+++|+ .++-.+++...
T Consensus 153 ATN~LPE~g~~leAL~DRFliri~vp~l~~~~~e~~lL~~~ 193 (498)
T PRK13531 153 ASNELPEADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQ 193 (498)
T ss_pred ECCCCcccCCchHHhHhhEEEEEECCCCCchHHHHHHHHcc
Confidence 446432 23458999998788899986 45557777653
No 218
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=98.65 E-value=2.7e-07 Score=114.33 Aligned_cols=196 Identities=18% Similarity=0.283 Sum_probs=116.3
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccch
Q 001707 727 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEA---GANFISITGSTLTS 803 (1023)
Q Consensus 727 vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~el---g~~fi~vs~seL~s 803 (1023)
..|++++|.....+.+.+.+... . ....+|||+|++|||||++|++|...+ +.+|+.++|..+..
T Consensus 373 ~~~~~liG~S~~~~~~~~~~~~~-------a-----~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~ 440 (686)
T PRK15429 373 SEFGEIIGRSEAMYSVLKQVEMV-------A-----QSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPA 440 (686)
T ss_pred ccccceeecCHHHHHHHHHHHHH-------h-----CCCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCCh
Confidence 46889999988888887776431 1 122469999999999999999998866 57999999987643
Q ss_pred h-----hhhhH-------HHHHHHHHHHHhhcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhcCcc-------
Q 001707 804 K-----WFGDA-------EKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLR------- 864 (1023)
Q Consensus 804 ~-----~~ge~-------e~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~------- 864 (1023)
. .+|.. .......|.. ...++||||||+.+.. ... ..|+..++...
T Consensus 441 ~~~~~~lfg~~~~~~~g~~~~~~g~le~---a~~GtL~Ldei~~L~~--------~~Q----~~L~~~l~~~~~~~~g~~ 505 (686)
T PRK15429 441 GLLESDLFGHERGAFTGASAQRIGRFEL---ADKSSLFLDEVGDMPL--------ELQ----PKLLRVLQEQEFERLGSN 505 (686)
T ss_pred hHhhhhhcCcccccccccccchhhHHHh---cCCCeEEEechhhCCH--------HHH----HHHHHHHHhCCEEeCCCC
Confidence 2 11210 0011122333 2458999999999832 222 23333332110
Q ss_pred CCCCceEEEEEecCCCC-------CCcHHHHhhcCCceeecCCCHHHHHH----HHHHHHhcc----ccC-CccC---HH
Q 001707 865 SKESQKILILGATNRPF-------DLDDAVIRRLPRRIYVDLPDAENRMK----ILRIFLAHE----SLE-SGFQ---FN 925 (1023)
Q Consensus 865 ~~~~~~VlVIaTTN~p~-------~Ld~aLlrRFd~~I~V~lPd~eeR~~----ILk~~L~~~----~l~-~dvd---l~ 925 (1023)
......+.||++|+..- .+...+..|+. .+.+..|...+|.+ +++.++.+. +.. ..+. +.
T Consensus 506 ~~~~~~~RiI~~t~~~l~~~~~~~~f~~~L~~~l~-~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~~s~~al~ 584 (686)
T PRK15429 506 KIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLN-VFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPAETLR 584 (686)
T ss_pred CcccceEEEEEeCCCCHHHHHHcCcccHHHHhccC-eeEEeCCChhhhHhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHH
Confidence 11124577888887642 24445555663 45677788777755 445544432 111 1122 22
Q ss_pred HHHHHccCCcHHHHHHHHHHHHHHH
Q 001707 926 ELANATEGYSGSDLKNLCIAAAYRP 950 (1023)
Q Consensus 926 ~LA~~TeGySgaDL~~L~~~Aa~~A 950 (1023)
.|....=--+.++|+++++.|+..+
T Consensus 585 ~L~~y~WPGNvrEL~~~i~~a~~~~ 609 (686)
T PRK15429 585 TLSNMEWPGNVRELENVIERAVLLT 609 (686)
T ss_pred HHHhCCCCCcHHHHHHHHHHHHHhC
Confidence 3322221236699999999888754
No 219
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=2.3e-07 Score=104.99 Aligned_cols=97 Identities=12% Similarity=0.197 Sum_probs=70.3
Q ss_pred HHHHHHHHHhh-cCCeEEEEcCchhh-hhhccCCccHHHHHHHHHHHHh---cCCCCEEEEecccCCCCCcccccccccc
Q 001707 473 AMEALCEVLHS-TQPLIVYFPDSSLW-LSRAVPRCNRKEFVRKVEEMFD---QLSGPVVLICGQNKNETGPKEKEKFTMI 547 (1023)
Q Consensus 473 ~i~~L~e~~~~-~~p~Iiff~di~~~-~~~s~~~~~~~~~~s~l~~~~~---~~~g~v~vI~~~~~~d~~~~~~~~~~~~ 547 (1023)
.|..||.-+++ ..-++||+||.|-+ ..+++.. ..+..-++|-++|= ..+-.+|++
T Consensus 430 kiH~lFDWakkS~rGLllFIDEADAFLceRnkty-mSEaqRsaLNAlLfRTGdqSrdivLv------------------- 489 (630)
T KOG0742|consen 430 KIHKLFDWAKKSRRGLLLFIDEADAFLCERNKTY-MSEAQRSALNALLFRTGDQSRDIVLV------------------- 489 (630)
T ss_pred HHHHHHHHHhhcccceEEEehhhHHHHHHhchhh-hcHHHHHHHHHHHHHhcccccceEEE-------------------
Confidence 67888888876 58899999999996 4454422 33333444444442 222222222
Q ss_pred ccccccccCCCCcchhhhcccccCCCcchHHHHhccccEEEEcCCChHHHHHHHHHHHHHH
Q 001707 548 LPNFGRLAKLPLPLQRLTEGLKATKRSDDNEIYNLFTNVLSIHPPKEEDLLRTFNKQVEED 608 (1023)
Q Consensus 548 ~~~~~~~~~~~~~~~~LvIGmTNR~d~iDeaL~rrFe~~ieI~LPdee~Rl~Il~Iht~~~ 608 (1023)
=+||||..+|-|+..||+-.+||+||-+|.|..+|+..+.+-
T Consensus 490 -------------------lAtNrpgdlDsAV~DRide~veFpLPGeEERfkll~lYlnky 531 (630)
T KOG0742|consen 490 -------------------LATNRPGDLDSAVNDRIDEVVEFPLPGEEERFKLLNLYLNKY 531 (630)
T ss_pred -------------------eccCCccchhHHHHhhhhheeecCCCChHHHHHHHHHHHHHH
Confidence 268888889999999999999999999999999999887763
No 220
>PRK12377 putative replication protein; Provisional
Probab=98.64 E-value=1.6e-07 Score=102.63 Aligned_cols=107 Identities=17% Similarity=0.240 Sum_probs=67.1
Q ss_pred cccccCCCCCCccccccc----ChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHh--
Q 001707 716 VSAVVPPGEIGVRFDDIG----ALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEA-- 789 (1023)
Q Consensus 716 ~~~ii~~~e~~vtfdDIg----Gle~vk~~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~el-- 789 (1023)
...-+|+.....+|+... |...+...+..++.. |.. ...+++|+||||||||+||.|||+++
T Consensus 60 ~~s~i~~~~~~~tFdnf~~~~~~~~~a~~~a~~~a~~-------~~~-----~~~~l~l~G~~GtGKThLa~AIa~~l~~ 127 (248)
T PRK12377 60 NRSGIQPLHRKCSFANYQVQNDGQRYALSQAKSIADE-------LMT-----GCTNFVFSGKPGTGKNHLAAAIGNRLLA 127 (248)
T ss_pred HHcCCCcccccCCcCCcccCChhHHHHHHHHHHHHHH-------HHh-----cCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 334456666667888764 333344444444432 211 22579999999999999999999988
Q ss_pred -CCcEEEEeccccchhhhhhHH--HHHHHHHHHHhhcCCeEEEeccchhh
Q 001707 790 -GANFISITGSTLTSKWFGDAE--KLTKALFSFASKLAPVIIFVDEVDSL 836 (1023)
Q Consensus 790 -g~~fi~vs~seL~s~~~ge~e--~~I~~lF~~A~k~~PsIIfIDEID~L 836 (1023)
|..++.++.++++........ .....++... ....+|+|||++..
T Consensus 128 ~g~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l--~~~dLLiIDDlg~~ 175 (248)
T PRK12377 128 KGRSVIVVTVPDVMSRLHESYDNGQSGEKFLQEL--CKVDLLVLDEIGIQ 175 (248)
T ss_pred cCCCeEEEEHHHHHHHHHHHHhccchHHHHHHHh--cCCCEEEEcCCCCC
Confidence 677888888777654322110 0111222222 35689999999764
No 221
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.63 E-value=1.5e-06 Score=98.47 Aligned_cols=128 Identities=13% Similarity=0.170 Sum_probs=89.0
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCc------------------------EEEEeccccchhhhhhHHHHHHHHHHH
Q 001707 764 PCKGILLFGPPGTGKTLLAKALATEAGAN------------------------FISITGSTLTSKWFGDAEKLTKALFSF 819 (1023)
Q Consensus 764 p~~gVLL~GPPGTGKT~LArAIA~elg~~------------------------fi~vs~seL~s~~~ge~e~~I~~lF~~ 819 (1023)
.++.+||+||+|+||+++|+++|+.+-+. |+.+...+ ++.. .-..++.+-..
T Consensus 23 l~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~--~~~I--~id~iR~l~~~ 98 (325)
T PRK06871 23 GHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPID--NKDI--GVDQVREINEK 98 (325)
T ss_pred cceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEcccc--CCCC--CHHHHHHHHHH
Confidence 45789999999999999999999987321 22222110 1111 12233433333
Q ss_pred ----HhhcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhcCccCCCCceEEEEEecCCCCCCcHHHHhhcCCce
Q 001707 820 ----ASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPFDLDDAVIRRLPRRI 895 (1023)
Q Consensus 820 ----A~k~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I 895 (1023)
+....--|++||++|.|. ....|.||..|+.- +..+++|.+|+.++.|.+.+++|+ ..+
T Consensus 99 ~~~~~~~g~~KV~iI~~a~~m~------------~~AaNaLLKtLEEP----p~~~~fiL~t~~~~~llpTI~SRC-~~~ 161 (325)
T PRK06871 99 VSQHAQQGGNKVVYIQGAERLT------------EAAANALLKTLEEP----RPNTYFLLQADLSAALLPTIYSRC-QTW 161 (325)
T ss_pred HhhccccCCceEEEEechhhhC------------HHHHHHHHHHhcCC----CCCeEEEEEECChHhCchHHHhhc-eEE
Confidence 333344699999999984 22356777777663 446788889999999999999999 578
Q ss_pred eecCCCHHHHHHHHHHH
Q 001707 896 YVDLPDAENRMKILRIF 912 (1023)
Q Consensus 896 ~V~lPd~eeR~~ILk~~ 912 (1023)
.+++|+.++..+.|...
T Consensus 162 ~~~~~~~~~~~~~L~~~ 178 (325)
T PRK06871 162 LIHPPEEQQALDWLQAQ 178 (325)
T ss_pred eCCCCCHHHHHHHHHHH
Confidence 89999999888887764
No 222
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.63 E-value=1.1e-08 Score=100.68 Aligned_cols=108 Identities=30% Similarity=0.425 Sum_probs=57.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEecc-ccc-hhhhhhH----HHHHHHHHHHHhhcC---CeEEEeccchhhh
Q 001707 767 GILLFGPPGTGKTLLAKALATEAGANFISITGS-TLT-SKWFGDA----EKLTKALFSFASKLA---PVIIFVDEVDSLL 837 (1023)
Q Consensus 767 gVLL~GPPGTGKT~LArAIA~elg~~fi~vs~s-eL~-s~~~ge~----e~~I~~lF~~A~k~~---PsIIfIDEID~L~ 837 (1023)
+|||+|+||+|||++|+++|+.++..|..|.+. +++ ++..|.. +. ..|.. ... ..|+++|||++..
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~---~~f~~--~~GPif~~ill~DEiNrap 75 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQET---GEFEF--RPGPIFTNILLADEINRAP 75 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTT---TEEEE--EE-TT-SSEEEEETGGGS-
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCC---CeeEe--ecChhhhceeeecccccCC
Confidence 589999999999999999999999999888663 332 2222210 00 00000 001 2599999999864
Q ss_pred hccCCCchhHHHHHHHHHHHhhhc-------CccCCCCceEEEEEecCCCC-----CCcHHHHhhc
Q 001707 838 GARGGAFEHEATRRMRNEFMSAWD-------GLRSKESQKILILGATNRPF-----DLDDAVIRRL 891 (1023)
Q Consensus 838 ~~r~~~~~~e~~~ril~~LL~~Ld-------gl~~~~~~~VlVIaTTN~p~-----~Ld~aLlrRF 891 (1023)
++ +.+.|+..|. +....-..+.+||||-|+.+ .|++++++||
T Consensus 76 pk------------tQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~DRF 129 (131)
T PF07726_consen 76 PK------------TQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLDRF 129 (131)
T ss_dssp HH------------HHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHTTS
T ss_pred HH------------HHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhccc
Confidence 32 2333443332 32223345789999999876 4999999998
No 223
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=98.62 E-value=5.5e-07 Score=108.18 Aligned_cols=195 Identities=19% Similarity=0.296 Sum_probs=113.6
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHH-----------hCCcEEE
Q 001707 727 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATE-----------AGANFIS 795 (1023)
Q Consensus 727 vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~e-----------lg~~fi~ 795 (1023)
.+|++++|.....+.+.+.+... . ....+|||+|++||||+++|++|-.. .+.||+.
T Consensus 216 ~~f~~iiG~S~~m~~~~~~i~~~-------A-----~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~ 283 (538)
T PRK15424 216 YVLGDLLGQSPQMEQVRQTILLY-------A-----RSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVA 283 (538)
T ss_pred cchhheeeCCHHHHHHHHHHHHH-------h-----CCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEE
Confidence 46889999998888888877431 1 12346999999999999999999887 3679999
Q ss_pred Eeccccchhhh-----hhHHH--------HHHHHHHHHhhcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhcC
Q 001707 796 ITGSTLTSKWF-----GDAEK--------LTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDG 862 (1023)
Q Consensus 796 vs~seL~s~~~-----ge~e~--------~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldg 862 (1023)
++|..+..... |..+. .-..+|..| ....||||||+.|.. .. ...|+..++.
T Consensus 284 inCaal~e~lleseLFG~~~gaftga~~~~~~Gl~e~A---~gGTLfLdeI~~Lp~--------~~----Q~kLl~~L~e 348 (538)
T PRK15424 284 VNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIA---HGGTLFLDEIGEMPL--------PL----QTRLLRVLEE 348 (538)
T ss_pred eecccCChhhHHHHhcCCccccccCccccccCCchhcc---CCCEEEEcChHhCCH--------HH----HHHHHhhhhc
Confidence 99987643221 10000 001233333 357999999999832 22 2233333322
Q ss_pred cc-------CCCCceEEEEEecCCCC-------CCcHHHHhhcCCceeecCCCHHHHHH----HHHHHHhccc--cCCcc
Q 001707 863 LR-------SKESQKILILGATNRPF-------DLDDAVIRRLPRRIYVDLPDAENRMK----ILRIFLAHES--LESGF 922 (1023)
Q Consensus 863 l~-------~~~~~~VlVIaTTN~p~-------~Ld~aLlrRFd~~I~V~lPd~eeR~~----ILk~~L~~~~--l~~dv 922 (1023)
-. ......+.||++|+..- .+.+.+..|+. .+.+..|...+|.+ ++..++.... ....+
T Consensus 349 ~~~~r~G~~~~~~~dvRiIaat~~~L~~~v~~g~Fr~dL~yrL~-~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~ 427 (538)
T PRK15424 349 KEVTRVGGHQPVPVDVRVISATHCDLEEDVRQGRFRRDLFYRLS-ILRLQLPPLRERVADILPLAESFLKQSLAALSAPF 427 (538)
T ss_pred CeEEecCCCceeccceEEEEecCCCHHHHHhcccchHHHHHHhc-CCeecCCChhhchhHHHHHHHHHHHHHHHHcCCCC
Confidence 10 01123467888887542 13344555663 46677777776654 4555554321 11112
Q ss_pred CHHHH------HHHcc--CC--cHHHHHHHHHHHHHH
Q 001707 923 QFNEL------ANATE--GY--SGSDLKNLCIAAAYR 949 (1023)
Q Consensus 923 dl~~L------A~~Te--Gy--SgaDL~~L~~~Aa~~ 949 (1023)
.-..+ ..... .| +.++|++++++++..
T Consensus 428 ~~~a~~~~~~a~~~L~~y~WPGNvREL~nvier~~i~ 464 (538)
T PRK15424 428 SAALRQGLQQCETLLLHYDWPGNVRELRNLMERLALF 464 (538)
T ss_pred CHHHHHhhHHHHHHHHhCCCCchHHHHHHHHHHHHHh
Confidence 11111 11111 22 569999999988764
No 224
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=98.62 E-value=2.5e-07 Score=110.30 Aligned_cols=146 Identities=24% Similarity=0.306 Sum_probs=86.1
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC----------------
Q 001707 727 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAG---------------- 790 (1023)
Q Consensus 727 vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~elg---------------- 790 (1023)
..|+|+.|...+++.+.-.+ ....+++|.||||||||+++++++..+.
T Consensus 189 ~d~~dv~Gq~~~~~al~~aa----------------~~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~ 252 (499)
T TIGR00368 189 LDLKDIKGQQHAKRALEIAA----------------AGGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSL 252 (499)
T ss_pred CCHHHhcCcHHHHhhhhhhc----------------cCCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccc
Confidence 47899999998877765433 2335799999999999999999986431
Q ss_pred ------------CcEEEEeccccchhhhhhHHHHHHHHHHHHhhcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHh
Q 001707 791 ------------ANFISITGSTLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMS 858 (1023)
Q Consensus 791 ------------~~fi~vs~seL~s~~~ge~e~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~ 858 (1023)
.||....++......+|.....-...+..| ...+|||||++.+. ..+...|+.
T Consensus 253 ~g~~~~~~~~~~~Pf~~p~~s~s~~~~~ggg~~~~pG~i~lA---~~GvLfLDEi~e~~------------~~~~~~L~~ 317 (499)
T TIGR00368 253 VGKLIDRKQIKQRPFRSPHHSASKPALVGGGPIPLPGEISLA---HNGVLFLDELPEFK------------RSVLDALRE 317 (499)
T ss_pred hhhhccccccccCCccccccccchhhhhCCccccchhhhhcc---CCCeEecCChhhCC------------HHHHHHHHH
Confidence 122222211111111111100011122222 34899999999873 122333333
Q ss_pred hhcCc---------cCCCCceEEEEEecCCC-----C------------------CCcHHHHhhcCCceeecCCCHH
Q 001707 859 AWDGL---------RSKESQKILILGATNRP-----F------------------DLDDAVIRRLPRRIYVDLPDAE 903 (1023)
Q Consensus 859 ~Ldgl---------~~~~~~~VlVIaTTN~p-----~------------------~Ld~aLlrRFd~~I~V~lPd~e 903 (1023)
.|+.- ......++.+|+++|.- . .+...|++||+..+.++.++..
T Consensus 318 ~LE~~~v~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllDR~dl~~~~~~~~~~ 394 (499)
T TIGR00368 318 PIEDGSISISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLDRIDLSVEVPLLPPE 394 (499)
T ss_pred HHHcCcEEEEecCcceeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHhhCCEEEEEcCCCHH
Confidence 33211 11123468899999852 1 3778899999988888776644
No 225
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.61 E-value=1.9e-06 Score=96.09 Aligned_cols=177 Identities=18% Similarity=0.262 Sum_probs=107.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---------CCcEEEEeccccchh--------------h--hhhHHHHHHHHHHHH
Q 001707 766 KGILLFGPPGTGKTLLAKALATEA---------GANFISITGSTLTSK--------------W--FGDAEKLTKALFSFA 820 (1023)
Q Consensus 766 ~gVLL~GPPGTGKT~LArAIA~el---------g~~fi~vs~seL~s~--------------~--~ge~e~~I~~lF~~A 820 (1023)
.++||+|++|+|||++++.++... .+|++.+.++.--+. + .......-..+....
T Consensus 62 p~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~ll 141 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRPRDRVAKLEQQVLRLL 141 (302)
T ss_pred CceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHH
Confidence 479999999999999999998765 247777766432110 0 011233334445556
Q ss_pred hhcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhcCccCCCCceEEEEEecCC--CCCCcHHHHhhcCCceeec
Q 001707 821 SKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNR--PFDLDDAVIRRLPRRIYVD 898 (1023)
Q Consensus 821 ~k~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~~~~~VlVIaTTN~--p~~Ld~aLlrRFd~~I~V~ 898 (1023)
+...+-+|+|||++.++... ....+.+++.| +.+...-.-+++.+||-.. .-.-|+.+.+||. .+.++
T Consensus 142 r~~~vrmLIIDE~H~lLaGs-----~~~qr~~Ln~L----K~L~NeL~ipiV~vGt~~A~~al~~D~QLa~RF~-~~~Lp 211 (302)
T PF05621_consen 142 RRLGVRMLIIDEFHNLLAGS-----YRKQREFLNAL----KFLGNELQIPIVGVGTREAYRALRTDPQLASRFE-PFELP 211 (302)
T ss_pred HHcCCcEEEeechHHHhccc-----HHHHHHHHHHH----HHHhhccCCCeEEeccHHHHHHhccCHHHHhccC-CccCC
Confidence 67788999999999986432 22223333333 3332222335666666432 2336788999995 55666
Q ss_pred CCC-HHHHHHHHHHHHhccccC--CccC----HHHHHHHccCCcHHHHHHHHHHHHHHHHHH
Q 001707 899 LPD-AENRMKILRIFLAHESLE--SGFQ----FNELANATEGYSGSDLKNLCIAAAYRPVQE 953 (1023)
Q Consensus 899 lPd-~eeR~~ILk~~L~~~~l~--~dvd----l~~LA~~TeGySgaDL~~L~~~Aa~~Airr 953 (1023)
.-. -++-..++..+-...++. +... ...|-.+++|.+ ++|..++..|+..|++.
T Consensus 212 ~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~i-G~l~~ll~~aA~~AI~s 272 (302)
T PF05621_consen 212 RWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLI-GELSRLLNAAAIAAIRS 272 (302)
T ss_pred CCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCch-HHHHHHHHHHHHHHHhc
Confidence 532 234455666665544432 2222 245556777754 68999999999999974
No 226
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=98.61 E-value=2.8e-07 Score=110.53 Aligned_cols=195 Identities=19% Similarity=0.256 Sum_probs=112.2
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccch
Q 001707 727 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEA---GANFISITGSTLTS 803 (1023)
Q Consensus 727 vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~el---g~~fi~vs~seL~s 803 (1023)
.+|++++|.....+.+.+.+... . ....+|||+|++||||+++|++|.+.+ +.||+.++|..+..
T Consensus 209 ~~f~~iiG~S~~m~~~~~~i~~~-------A-----~~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e 276 (526)
T TIGR02329 209 YRLDDLLGASAPMEQVRALVRLY-------A-----RSDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAE 276 (526)
T ss_pred cchhheeeCCHHHHHHHHHHHHH-------h-----CCCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCCh
Confidence 56889999998888888877431 1 122469999999999999999998765 57999999987643
Q ss_pred hhh-----hhHH--------HHHHHHHHHHhhcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhcCcc------
Q 001707 804 KWF-----GDAE--------KLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLR------ 864 (1023)
Q Consensus 804 ~~~-----ge~e--------~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~------ 864 (1023)
... |..+ ..-..+|..| ....||||||+.|.. ... ..|+..++.-.
T Consensus 277 ~lleseLFG~~~gaftga~~~~~~Gl~e~A---~gGTLfLdeI~~Lp~--------~~Q----~~Ll~~L~~~~~~r~g~ 341 (526)
T TIGR02329 277 SLLEAELFGYEEGAFTGARRGGRTGLIEAA---HRGTLFLDEIGEMPL--------PLQ----TRLLRVLEEREVVRVGG 341 (526)
T ss_pred hHHHHHhcCCcccccccccccccccchhhc---CCceEEecChHhCCH--------HHH----HHHHHHHhcCcEEecCC
Confidence 221 1000 0011223322 357999999999832 222 23333332110
Q ss_pred -CCCCceEEEEEecCCCC-------CCcHHHHhhcCCceeecCCCHHHHHH----HHHHHHhccccC--CccCHHHHHH-
Q 001707 865 -SKESQKILILGATNRPF-------DLDDAVIRRLPRRIYVDLPDAENRMK----ILRIFLAHESLE--SGFQFNELAN- 929 (1023)
Q Consensus 865 -~~~~~~VlVIaTTN~p~-------~Ld~aLlrRFd~~I~V~lPd~eeR~~----ILk~~L~~~~l~--~dvdl~~LA~- 929 (1023)
......+.||++|+..- .+.+.+..|+. .+.+..|...+|.+ ++..++...... ..+.-..+..
T Consensus 342 ~~~~~~dvRiIaat~~~l~~~v~~g~fr~dL~~rL~-~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~~~ 420 (526)
T TIGR02329 342 TEPVPVDVRVVAATHCALTTAVQQGRFRRDLFYRLS-ILRIALPPLRERPGDILPLAAEYLVQAAAALRLPDSEAAAQVL 420 (526)
T ss_pred CceeeecceEEeccCCCHHHHhhhcchhHHHHHhcC-CcEEeCCCchhchhHHHHHHHHHHHHHHHHcCCCCCHHHHHHh
Confidence 01112457888886542 23344555663 45666777766654 445555432211 1122111111
Q ss_pred ------H-ccCC--cHHHHHHHHHHHHHH
Q 001707 930 ------A-TEGY--SGSDLKNLCIAAAYR 949 (1023)
Q Consensus 930 ------~-TeGy--SgaDL~~L~~~Aa~~ 949 (1023)
+ ...| +.++|++++++++..
T Consensus 421 ~~~~~~L~~y~WPGNvrEL~nvier~~i~ 449 (526)
T TIGR02329 421 AGVADPLQRYPWPGNVRELRNLVERLALE 449 (526)
T ss_pred HHHHHHHHhCCCCchHHHHHHHHHHHHHh
Confidence 1 1122 558888888887764
No 227
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=98.61 E-value=9.6e-07 Score=105.87 Aligned_cols=196 Identities=16% Similarity=0.198 Sum_probs=115.5
Q ss_pred cccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccchhh
Q 001707 729 FDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEA---GANFISITGSTLTSKW 805 (1023)
Q Consensus 729 fdDIgGle~vk~~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~el---g~~fi~vs~seL~s~~ 805 (1023)
+.+++|.....+.+.+.+... . ....+|||+|++||||+++|++|...+ +.+|+.++|..+....
T Consensus 186 ~~~iig~s~~~~~~~~~i~~~-------a-----~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~ 253 (509)
T PRK05022 186 EGEMIGQSPAMQQLKKEIEVV-------A-----ASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESL 253 (509)
T ss_pred CCceeecCHHHHHHHHHHHHH-------h-----CCCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHH
Confidence 556778877777777766431 1 223469999999999999999999876 5799999998874321
Q ss_pred h-----hhHHH-------HHHHHHHHHhhcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhcCcc-------CC
Q 001707 806 F-----GDAEK-------LTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLR-------SK 866 (1023)
Q Consensus 806 ~-----ge~e~-------~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~-------~~ 866 (1023)
. |.... .....|.. .....|||||||.|.. ... ..|+..++.-. ..
T Consensus 254 ~e~~lfG~~~g~~~ga~~~~~g~~~~---a~gGtL~ldeI~~L~~--------~~Q----~~Ll~~l~~~~~~~~g~~~~ 318 (509)
T PRK05022 254 AESELFGHVKGAFTGAISNRSGKFEL---ADGGTLFLDEIGELPL--------ALQ----AKLLRVLQYGEIQRVGSDRS 318 (509)
T ss_pred HHHHhcCccccccCCCcccCCcchhh---cCCCEEEecChhhCCH--------HHH----HHHHHHHhcCCEeeCCCCcc
Confidence 1 10000 00112322 2457899999999842 222 23333332110 01
Q ss_pred CCceEEEEEecCCC-------CCCcHHHHhhcCCceeecCCCHHHHHH----HHHHHHhccc----c-CCccCHHHHHHH
Q 001707 867 ESQKILILGATNRP-------FDLDDAVIRRLPRRIYVDLPDAENRMK----ILRIFLAHES----L-ESGFQFNELANA 930 (1023)
Q Consensus 867 ~~~~VlVIaTTN~p-------~~Ld~aLlrRFd~~I~V~lPd~eeR~~----ILk~~L~~~~----l-~~dvdl~~LA~~ 930 (1023)
....+.||++|+.. ..+.+.|..|+. .+.+..|...+|.+ ++++++.... . ...+.-..+...
T Consensus 319 ~~~~~RiI~~t~~~l~~~~~~~~f~~dL~~rl~-~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~a~~~L 397 (509)
T PRK05022 319 LRVDVRVIAATNRDLREEVRAGRFRADLYHRLS-VFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPAAQAAL 397 (509)
T ss_pred eecceEEEEecCCCHHHHHHcCCccHHHHhccc-ccEeeCCCchhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHH
Confidence 12357888888764 235566666774 45666777766644 4444444321 1 122333333332
Q ss_pred cc---CCcHHHHHHHHHHHHHHHHH
Q 001707 931 TE---GYSGSDLKNLCIAAAYRPVQ 952 (1023)
Q Consensus 931 Te---GySgaDL~~L~~~Aa~~Air 952 (1023)
.. -.+.++|+++++.|+..+-.
T Consensus 398 ~~y~WPGNvrEL~~~i~ra~~~~~~ 422 (509)
T PRK05022 398 LAYDWPGNVRELEHVISRAALLARA 422 (509)
T ss_pred HhCCCCCcHHHHHHHHHHHHHhcCC
Confidence 22 23669999999998886643
No 228
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=98.60 E-value=8.6e-07 Score=108.98 Aligned_cols=193 Identities=15% Similarity=0.168 Sum_probs=112.8
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccch
Q 001707 727 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEA---GANFISITGSTLTS 803 (1023)
Q Consensus 727 vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~el---g~~fi~vs~seL~s 803 (1023)
.+|++++|.....+.+.+.+... . ....+|||+|++||||+++|++|.+.+ +.+|+.++|..+..
T Consensus 322 ~~~~~l~g~s~~~~~~~~~~~~~-------a-----~~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~ 389 (638)
T PRK11388 322 HTFDHMPQDSPQMRRLIHFGRQA-------A-----KSSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPD 389 (638)
T ss_pred ccccceEECCHHHHHHHHHHHHH-------h-----CcCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCCh
Confidence 46888888887777776665331 1 122459999999999999999998876 46999999987642
Q ss_pred hhhhhHHHHHHHHHHHH------------hhcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhcCcc-C-----
Q 001707 804 KWFGDAEKLTKALFSFA------------SKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLR-S----- 865 (1023)
Q Consensus 804 ~~~ge~e~~I~~lF~~A------------~k~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~-~----- 865 (1023)
.. ....+|..+ .....++||||||+.|... . ...|+..++.-. .
T Consensus 390 ~~------~~~elfg~~~~~~~~~~~g~~~~a~~GtL~ldei~~l~~~--------~----Q~~Ll~~l~~~~~~~~~~~ 451 (638)
T PRK11388 390 EA------LAEEFLGSDRTDSENGRLSKFELAHGGTLFLEKVEYLSPE--------L----QSALLQVLKTGVITRLDSR 451 (638)
T ss_pred HH------HHHHhcCCCCcCccCCCCCceeECCCCEEEEcChhhCCHH--------H----HHHHHHHHhcCcEEeCCCC
Confidence 11 111222211 1224589999999998322 2 223333332110 0
Q ss_pred -CCCceEEEEEecCCC-------CCCcHHHHhhcCCceeecCCCHHHHHH----HHHHHHhcc----ccCCccCHH---H
Q 001707 866 -KESQKILILGATNRP-------FDLDDAVIRRLPRRIYVDLPDAENRMK----ILRIFLAHE----SLESGFQFN---E 926 (1023)
Q Consensus 866 -~~~~~VlVIaTTN~p-------~~Ld~aLlrRFd~~I~V~lPd~eeR~~----ILk~~L~~~----~l~~dvdl~---~ 926 (1023)
.....+.||+||+.. ..+.+.|.-|+. .+.+..|...+|.+ +++.++... .....+.-+ .
T Consensus 452 ~~~~~~~riI~~t~~~l~~~~~~~~f~~dL~~~l~-~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~s~~a~~~ 530 (638)
T PRK11388 452 RLIPVDVRVIATTTADLAMLVEQNRFSRQLYYALH-AFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLKIDDDALAR 530 (638)
T ss_pred ceEEeeEEEEEeccCCHHHHHhcCCChHHHhhhhc-eeEEeCCChhhhhhHHHHHHHHHHHHHHHHhCCCCCcCHHHHHH
Confidence 011257788888754 234455555663 56677788777743 444444432 111123322 3
Q ss_pred HHHHccCCcHHHHHHHHHHHHHHH
Q 001707 927 LANATEGYSGSDLKNLCIAAAYRP 950 (1023)
Q Consensus 927 LA~~TeGySgaDL~~L~~~Aa~~A 950 (1023)
|....=.-+.++|+++++.|+..+
T Consensus 531 L~~y~WPGNvreL~~~l~~~~~~~ 554 (638)
T PRK11388 531 LVSYRWPGNDFELRSVIENLALSS 554 (638)
T ss_pred HHcCCCCChHHHHHHHHHHHHHhC
Confidence 332221235689999998877643
No 229
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=98.59 E-value=8.2e-07 Score=106.75 Aligned_cols=197 Identities=19% Similarity=0.262 Sum_probs=113.6
Q ss_pred CcccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccc
Q 001707 726 GVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEA---GANFISITGSTLT 802 (1023)
Q Consensus 726 ~vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~el---g~~fi~vs~seL~ 802 (1023)
..+|++++|.....+.+.+.+... .. ....|||+|++||||+++|+++-..+ ..||+.++|+.+.
T Consensus 200 ~~~f~~~ig~s~~~~~~~~~~~~~-------A~-----~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~ 267 (520)
T PRK10820 200 DSAFSQIVAVSPKMRQVVEQARKL-------AM-----LDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIP 267 (520)
T ss_pred cccccceeECCHHHHHHHHHHHHH-------hC-----CCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCC
Confidence 457899999887777666655321 11 12359999999999999999987665 4699999998875
Q ss_pred hhhh-----hhHH-------HHHHHHHHHHhhcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhcCc--cC---
Q 001707 803 SKWF-----GDAE-------KLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGL--RS--- 865 (1023)
Q Consensus 803 s~~~-----ge~e-------~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl--~~--- 865 (1023)
.... |... .....+|..| ....||||||+.|... .. ..|+..+..- ..
T Consensus 268 ~~~~e~elFG~~~~~~~~~~~~~~g~~e~a---~~GtL~LdeI~~L~~~--------~Q----~~Ll~~l~~~~~~~~g~ 332 (520)
T PRK10820 268 DDVVESELFGHAPGAYPNALEGKKGFFEQA---NGGSVLLDEIGEMSPR--------MQ----AKLLRFLNDGTFRRVGE 332 (520)
T ss_pred HHHHHHHhcCCCCCCcCCcccCCCChhhhc---CCCEEEEeChhhCCHH--------HH----HHHHHHHhcCCcccCCC
Confidence 3211 1000 0001223322 3578999999998422 22 2333333221 10
Q ss_pred --CCCceEEEEEecCCC-------CCCcHHHHhhcCCceeecCCCHHHHHH----HHHHHHhc----ccc-CCccCHHHH
Q 001707 866 --KESQKILILGATNRP-------FDLDDAVIRRLPRRIYVDLPDAENRMK----ILRIFLAH----ESL-ESGFQFNEL 927 (1023)
Q Consensus 866 --~~~~~VlVIaTTN~p-------~~Ld~aLlrRFd~~I~V~lPd~eeR~~----ILk~~L~~----~~l-~~dvdl~~L 927 (1023)
.....+.||+||+.+ ..+.+.|..|+. .+.+..|...+|.+ ++..++.. .+. ...+.-+.+
T Consensus 333 ~~~~~~~vRiI~st~~~l~~l~~~g~f~~dL~~rL~-~~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~~~~~ls~~a~ 411 (520)
T PRK10820 333 DHEVHVDVRVICATQKNLVELVQKGEFREDLYYRLN-VLTLNLPPLRDRPQDIMPLTELFVARFADEQGVPRPKLAADLN 411 (520)
T ss_pred CcceeeeeEEEEecCCCHHHHHHcCCccHHHHhhcC-eeEEeCCCcccChhHHHHHHHHHHHHHHHHcCCCCCCcCHHHH
Confidence 012356788888654 225567777875 36677777666653 33344432 221 123333333
Q ss_pred HHHcc-CC--cHHHHHHHHHHHHHHH
Q 001707 928 ANATE-GY--SGSDLKNLCIAAAYRP 950 (1023)
Q Consensus 928 A~~Te-Gy--SgaDL~~L~~~Aa~~A 950 (1023)
..... .| +.++|++++..|+..+
T Consensus 412 ~~L~~y~WPGNvreL~nvl~~a~~~~ 437 (520)
T PRK10820 412 TVLTRYGWPGNVRQLKNAIYRALTQL 437 (520)
T ss_pred HHHhcCCCCCHHHHHHHHHHHHHHhC
Confidence 33322 12 5688888888877653
No 230
>CHL00181 cbbX CbbX; Provisional
Probab=98.57 E-value=4.4e-07 Score=101.30 Aligned_cols=98 Identities=12% Similarity=0.168 Sum_probs=68.0
Q ss_pred HHHHHHHhhcCCeEEEEcCchhhhhhccCCccHHHHHHHHHHHHhcCCCCEEEEecccCCCCCccccccccccccccccc
Q 001707 475 EALCEVLHSTQPLIVYFPDSSLWLSRAVPRCNRKEFVRKVEEMFDQLSGPVVLICGQNKNETGPKEKEKFTMILPNFGRL 554 (1023)
Q Consensus 475 ~~L~e~~~~~~p~Iiff~di~~~~~~s~~~~~~~~~~s~l~~~~~~~~g~v~vI~~~~~~d~~~~~~~~~~~~~~~~~~~ 554 (1023)
..+|+.+ .+-||||||++.+.......+...+.+++|..+|+.-.+.++||++++... .+ .
T Consensus 115 ~~~l~~a---~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~---~~--~----------- 175 (287)
T CHL00181 115 KEVLKKA---MGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDR---MD--K----------- 175 (287)
T ss_pred HHHHHHc---cCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHH---HH--H-----------
Confidence 3445444 457999999998753211112234677888888888778888886643211 00 0
Q ss_pred cCCCCcchhhhcccccCCCcchHHHHhccccEEEEcCCChHHHHHHHHHHHHHH
Q 001707 555 AKLPLPLQRLTEGLKATKRSDDNEIYNLFTNVLSIHPPKEEDLLRTFNKQVEED 608 (1023)
Q Consensus 555 ~~~~~~~~~LvIGmTNR~d~iDeaL~rrFe~~ieI~LPdee~Rl~Il~Iht~~~ 608 (1023)
+ -.++++|++||+.+|+|++++.+.+.+|++..+++.
T Consensus 176 ---------~--------~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~~ 212 (287)
T CHL00181 176 ---------F--------YESNPGLSSRIANHVDFPDYTPEELLQIAKIMLEEQ 212 (287)
T ss_pred ---------H--------HhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHHh
Confidence 0 124589999999999999999999999999987653
No 231
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.57 E-value=1.6e-06 Score=98.81 Aligned_cols=152 Identities=15% Similarity=0.189 Sum_probs=99.2
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCC------------------------cEEEEecccc-chhhhhhHHHHHHHHH
Q 001707 763 RPCKGILLFGPPGTGKTLLAKALATEAGA------------------------NFISITGSTL-TSKWFGDAEKLTKALF 817 (1023)
Q Consensus 763 ~p~~gVLL~GPPGTGKT~LArAIA~elg~------------------------~fi~vs~seL-~s~~~ge~e~~I~~lF 817 (1023)
+.++.+||+||+|+||+++|.++|+.+-+ .|..+.+..- ..-.+.+....+..+.
T Consensus 22 rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~idqiR~l~~~~~ 101 (334)
T PRK07993 22 RGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGKSSLGVDAVREVTEKLY 101 (334)
T ss_pred CcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccCCHHHHHHHHHHHh
Confidence 44678999999999999999999998732 1222222110 0011223333334444
Q ss_pred HHHhhcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhcCccCCCCceEEEEEecCCCCCCcHHHHhhcCCceee
Q 001707 818 SFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPFDLDDAVIRRLPRRIYV 897 (1023)
Q Consensus 818 ~~A~k~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~V 897 (1023)
........-|++||++|.|. ....|.||..|+. ++.++++|.+|+.++.|.+.+++|+. .+.+
T Consensus 102 ~~~~~g~~kV~iI~~ae~m~------------~~AaNaLLKtLEE----Pp~~t~fiL~t~~~~~lLpTIrSRCq-~~~~ 164 (334)
T PRK07993 102 EHARLGGAKVVWLPDAALLT------------DAAANALLKTLEE----PPENTWFFLACREPARLLATLRSRCR-LHYL 164 (334)
T ss_pred hccccCCceEEEEcchHhhC------------HHHHHHHHHHhcC----CCCCeEEEEEECChhhChHHHHhccc-cccC
Confidence 44444455799999999984 2335677777766 34568888899999999999999995 6899
Q ss_pred cCCCHHHHHHHHHHHHhccccCCccCHHHHHHHccCCc
Q 001707 898 DLPDAENRMKILRIFLAHESLESGFQFNELANATEGYS 935 (1023)
Q Consensus 898 ~lPd~eeR~~ILk~~L~~~~l~~dvdl~~LA~~TeGyS 935 (1023)
++|+.++....|.... ++. ..+...++..+.|-.
T Consensus 165 ~~~~~~~~~~~L~~~~---~~~-~~~a~~~~~la~G~~ 198 (334)
T PRK07993 165 APPPEQYALTWLSREV---TMS-QDALLAALRLSAGAP 198 (334)
T ss_pred CCCCHHHHHHHHHHcc---CCC-HHHHHHHHHHcCCCH
Confidence 9999888887775421 221 222445555666533
No 232
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.56 E-value=3.3e-07 Score=99.99 Aligned_cols=107 Identities=21% Similarity=0.254 Sum_probs=67.4
Q ss_pred cccccCCCCCCcccccccCh----HHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHh--
Q 001707 716 VSAVVPPGEIGVRFDDIGAL----EDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEA-- 789 (1023)
Q Consensus 716 ~~~ii~~~e~~vtfdDIgGl----e~vk~~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~el-- 789 (1023)
....+|+.....+|+++... ..+...+.+++.. |. ....+++|+|+||||||+|+.+||+++
T Consensus 58 ~~s~i~~~~~~~tFdnf~~~~~~q~~al~~a~~~~~~-------~~-----~~~~~~~l~G~~GtGKThLa~aia~~l~~ 125 (244)
T PRK07952 58 NRSGIRPLHQNCSFENYRVECEGQMNALSKARQYVEE-------FD-----GNIASFIFSGKPGTGKNHLAAAICNELLL 125 (244)
T ss_pred HHcCCCccccCCccccccCCCchHHHHHHHHHHHHHh-------hc-----cCCceEEEECCCCCCHHHHHHHHHHHHHh
Confidence 34445665566788886432 2233344433321 11 112479999999999999999999998
Q ss_pred -CCcEEEEeccccchhhhhhH---HHHHHHHHHHHhhcCCeEEEeccchhh
Q 001707 790 -GANFISITGSTLTSKWFGDA---EKLTKALFSFASKLAPVIIFVDEVDSL 836 (1023)
Q Consensus 790 -g~~fi~vs~seL~s~~~ge~---e~~I~~lF~~A~k~~PsIIfIDEID~L 836 (1023)
+..++.++.++++....... ......++... ....+|+|||++..
T Consensus 126 ~g~~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~l--~~~dlLvIDDig~~ 174 (244)
T PRK07952 126 RGKSVLIITVADIMSAMKDTFSNSETSEEQLLNDL--SNVDLLVIDEIGVQ 174 (244)
T ss_pred cCCeEEEEEHHHHHHHHHHHHhhccccHHHHHHHh--ccCCEEEEeCCCCC
Confidence 77888888888765433221 11122333332 25689999999875
No 233
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.53 E-value=7.2e-07 Score=101.78 Aligned_cols=133 Identities=19% Similarity=0.216 Sum_probs=90.4
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------------------EEEEeccccc---------------
Q 001707 763 RPCKGILLFGPPGTGKTLLAKALATEAGAN-------------------------FISITGSTLT--------------- 802 (1023)
Q Consensus 763 ~p~~gVLL~GPPGTGKT~LArAIA~elg~~-------------------------fi~vs~seL~--------------- 802 (1023)
+.++.+||+||+|+||+++|+++|+.+.+. ++.+......
T Consensus 19 rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~ 98 (342)
T PRK06964 19 RLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEADA 98 (342)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccchh
Confidence 445789999999999999999999988432 1222111000
Q ss_pred ---hh----hhh-hHHHHHHHHHHHHh----hcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhcCccCCCCce
Q 001707 803 ---SK----WFG-DAEKLTKALFSFAS----KLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQK 870 (1023)
Q Consensus 803 ---s~----~~g-e~e~~I~~lF~~A~----k~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~~~~~ 870 (1023)
++ ... -.-..++.+...+. ...--|++||++|.|. ....|.||..|+. ++.+
T Consensus 99 ~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~------------~~AaNaLLKtLEE----Pp~~ 162 (342)
T PRK06964 99 DEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALN------------VAAANALLKTLEE----PPPG 162 (342)
T ss_pred hcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcC------------HHHHHHHHHHhcC----CCcC
Confidence 00 000 01123444444332 2234599999999983 2335677777775 3457
Q ss_pred EEEEEecCCCCCCcHHHHhhcCCceeecCCCHHHHHHHHHHH
Q 001707 871 ILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIF 912 (1023)
Q Consensus 871 VlVIaTTN~p~~Ld~aLlrRFd~~I~V~lPd~eeR~~ILk~~ 912 (1023)
+++|.+|+.++.|.+.+++|+ ..+.|++|+.++..++|...
T Consensus 163 t~fiL~t~~~~~LLpTI~SRc-q~i~~~~~~~~~~~~~L~~~ 203 (342)
T PRK06964 163 TVFLLVSARIDRLLPTILSRC-RQFPMTVPAPEAAAAWLAAQ 203 (342)
T ss_pred cEEEEEECChhhCcHHHHhcC-EEEEecCCCHHHHHHHHHHc
Confidence 888889999999999999999 68999999999988888653
No 234
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.53 E-value=1.1e-06 Score=100.42 Aligned_cols=63 Identities=21% Similarity=0.253 Sum_probs=48.6
Q ss_pred ccc-cccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC-------cEEEEec
Q 001707 728 RFD-DIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGA-------NFISITG 798 (1023)
Q Consensus 728 tfd-DIgGle~vk~~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~elg~-------~fi~vs~ 798 (1023)
-|+ ++.|+++.+.++.+++..... |.-...+.++|+||||+|||+||++||+.++. +++.+..
T Consensus 48 ~F~~~~~G~~~~i~~lv~~l~~~a~--------g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~ 118 (361)
T smart00763 48 FFDHDFFGMEEAIERFVNYFKSAAQ--------GLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKW 118 (361)
T ss_pred ccchhccCcHHHHHHHHHHHHHHHh--------cCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEe
Confidence 366 899999999999887754321 11233467899999999999999999999965 7777765
No 235
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.52 E-value=7e-07 Score=91.49 Aligned_cols=133 Identities=23% Similarity=0.298 Sum_probs=85.4
Q ss_pred ChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC----------------------
Q 001707 734 ALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGA---------------------- 791 (1023)
Q Consensus 734 Gle~vk~~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~elg~---------------------- 791 (1023)
|++.+.+.|...+.. -+.++.+||+||+|+||+++|.++|+.+-.
T Consensus 1 gq~~~~~~L~~~~~~-------------~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~ 67 (162)
T PF13177_consen 1 GQEEIIELLKNLIKS-------------GRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNH 67 (162)
T ss_dssp S-HHHHHHHHHHHHC-------------TC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-C
T ss_pred CcHHHHHHHHHHHHc-------------CCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccC
Confidence 677888888887743 134567999999999999999999998721
Q ss_pred -cEEEEeccccchhhhhhHHHHHHHHHHHHh----hcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhcCccCC
Q 001707 792 -NFISITGSTLTSKWFGDAEKLTKALFSFAS----KLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSK 866 (1023)
Q Consensus 792 -~fi~vs~seL~s~~~ge~e~~I~~lF~~A~----k~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~ 866 (1023)
.++.+........ -....++.+...+. ....-|++|||+|.|. ....|.|+..|+..
T Consensus 68 ~d~~~~~~~~~~~~---i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~------------~~a~NaLLK~LEep--- 129 (162)
T PF13177_consen 68 PDFIIIKPDKKKKS---IKIDQIREIIEFLSLSPSEGKYKVIIIDEADKLT------------EEAQNALLKTLEEP--- 129 (162)
T ss_dssp TTEEEEETTTSSSS---BSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS-------------HHHHHHHHHHHHST---
T ss_pred cceEEEecccccch---hhHHHHHHHHHHHHHHHhcCCceEEEeehHhhhh------------HHHHHHHHHHhcCC---
Confidence 2344433321000 01233444444433 2345699999999984 23356777777653
Q ss_pred CCceEEEEEecCCCCCCcHHHHhhcCCceeecC
Q 001707 867 ESQKILILGATNRPFDLDDAVIRRLPRRIYVDL 899 (1023)
Q Consensus 867 ~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~V~l 899 (1023)
+..+.+|.+|+.++.|-+.+++|+ ..+.+++
T Consensus 130 -p~~~~fiL~t~~~~~il~TI~SRc-~~i~~~~ 160 (162)
T PF13177_consen 130 -PENTYFILITNNPSKILPTIRSRC-QVIRFRP 160 (162)
T ss_dssp -TTTEEEEEEES-GGGS-HHHHTTS-EEEEE--
T ss_pred -CCCEEEEEEECChHHChHHHHhhc-eEEecCC
Confidence 456888889999999999999998 4566654
No 236
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=98.52 E-value=3.2e-07 Score=107.81 Aligned_cols=199 Identities=23% Similarity=0.305 Sum_probs=116.4
Q ss_pred CCcccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccc
Q 001707 725 IGVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEA---GANFISITGSTL 801 (1023)
Q Consensus 725 ~~vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~el---g~~fi~vs~seL 801 (1023)
...+|++|+|-......+.+.+.. + .....+|||.|.+||||..+|++|-+.+ +.||+.++|+-+
T Consensus 240 a~y~f~~Iig~S~~m~~~~~~akr-------~-----A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAi 307 (560)
T COG3829 240 AKYTFDDIIGESPAMLRVLELAKR-------I-----AKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAI 307 (560)
T ss_pred cccchhhhccCCHHHHHHHHHHHh-------h-----cCCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccC
Confidence 357899999998888888776632 1 2334579999999999999999998877 679999999766
Q ss_pred chhhhhh-HHHHHHHHHHHHhhc---------CCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhc-------Ccc
Q 001707 802 TSKWFGD-AEKLTKALFSFASKL---------APVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWD-------GLR 864 (1023)
Q Consensus 802 ~s~~~ge-~e~~I~~lF~~A~k~---------~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ld-------gl~ 864 (1023)
-...... .=......|.-|.+. ...-||+|||..|. ..+...||..|. |-.
T Consensus 308 Pe~LlESELFGye~GAFTGA~~~GK~GlfE~A~gGTLFLDEIgemp------------l~LQaKLLRVLQEkei~rvG~t 375 (560)
T COG3829 308 PETLLESELFGYEKGAFTGASKGGKPGLFELANGGTLFLDEIGEMP------------LPLQAKLLRVLQEKEIERVGGT 375 (560)
T ss_pred CHHHHHHHHhCcCCccccccccCCCCcceeeccCCeEEehhhccCC------------HHHHHHHHHHHhhceEEecCCC
Confidence 3322110 001112223333332 24799999998873 112223333332 111
Q ss_pred CCCCceEEEEEecCCCC--C-----CcHHHHhhcCCceeecCCCHHHHHH----HHHHHHhc----cccC-CccCHHHHH
Q 001707 865 SKESQKILILGATNRPF--D-----LDDAVIRRLPRRIYVDLPDAENRMK----ILRIFLAH----ESLE-SGFQFNELA 928 (1023)
Q Consensus 865 ~~~~~~VlVIaTTN~p~--~-----Ld~aLlrRFd~~I~V~lPd~eeR~~----ILk~~L~~----~~l~-~dvdl~~LA 928 (1023)
......|.||||||+.- . +-..|-=|.+ ++.+..|...+|.+ +...++.+ ++.. ..+.-+.++
T Consensus 376 ~~~~vDVRIIAATN~nL~~~i~~G~FReDLYYRLN-V~~i~iPPLReR~eDI~~L~~~Fl~k~s~~~~~~v~~ls~~a~~ 454 (560)
T COG3829 376 KPIPVDVRIIAATNRNLEKMIAEGTFREDLYYRLN-VIPITIPPLRERKEDIPLLAEYFLDKFSRRYGRNVKGLSPDALA 454 (560)
T ss_pred CceeeEEEEEeccCcCHHHHHhcCcchhhheeeec-eeeecCCCcccCcchHHHHHHHHHHHHHHHcCCCcccCCHHHHH
Confidence 12345789999999741 1 1122222553 56677787766654 33333332 2211 222223333
Q ss_pred HHcc-CC--cHHHHHHHHHHHHH
Q 001707 929 NATE-GY--SGSDLKNLCIAAAY 948 (1023)
Q Consensus 929 ~~Te-Gy--SgaDL~~L~~~Aa~ 948 (1023)
.... .| +.++|.+++.+|..
T Consensus 455 ~L~~y~WPGNVRELeNviER~v~ 477 (560)
T COG3829 455 LLLRYDWPGNVRELENVIERAVN 477 (560)
T ss_pred HHHhCCCCchHHHHHHHHHHHHh
Confidence 3222 22 56999999988886
No 237
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.51 E-value=2.9e-06 Score=96.02 Aligned_cols=169 Identities=20% Similarity=0.217 Sum_probs=105.2
Q ss_pred hHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc---------------------E
Q 001707 735 LEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGAN---------------------F 793 (1023)
Q Consensus 735 le~vk~~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~elg~~---------------------f 793 (1023)
+..+.+.|...+.. + +-++.+||+||+|+||+++|.++|+.+-+. |
T Consensus 9 ~~~~~~~l~~~~~~----------~---rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~ 75 (319)
T PRK08769 9 QQRAYDQTVAALDA----------G---RLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDL 75 (319)
T ss_pred HHHHHHHHHHHHHc----------C---CcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCE
Confidence 45566666665522 1 345689999999999999999999877321 1
Q ss_pred EEEe-ccccchh-h-hhhHHHHHHHHHHHHhhc----CCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhcCccCC
Q 001707 794 ISIT-GSTLTSK-W-FGDAEKLTKALFSFASKL----APVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSK 866 (1023)
Q Consensus 794 i~vs-~seL~s~-~-~ge~e~~I~~lF~~A~k~----~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~ 866 (1023)
+.+. .++-.+. . ..-.-..|+.+...+... .--|++||++|.|. ....|.||..|+.-
T Consensus 76 ~~i~~~p~~~~~k~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~------------~~AaNaLLKtLEEP--- 140 (319)
T PRK08769 76 QLVSFIPNRTGDKLRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAIN------------RAACNALLKTLEEP--- 140 (319)
T ss_pred EEEecCCCcccccccccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhC------------HHHHHHHHHHhhCC---
Confidence 2221 0000000 0 000123445555444332 23699999999983 22356777777653
Q ss_pred CCceEEEEEecCCCCCCcHHHHhhcCCceeecCCCHHHHHHHHHHHHhccccCCccCHHHHHHHccCCcHHH
Q 001707 867 ESQKILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLESGFQFNELANATEGYSGSD 938 (1023)
Q Consensus 867 ~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~V~lPd~eeR~~ILk~~L~~~~l~~dvdl~~LA~~TeGySgaD 938 (1023)
..++++|.+|+.++.|.+.+++|+ ..+.|+.|+.++-...|... .+ +..+...++..+.|-.+.-
T Consensus 141 -p~~~~fiL~~~~~~~lLpTIrSRC-q~i~~~~~~~~~~~~~L~~~----~~-~~~~a~~~~~l~~G~p~~A 205 (319)
T PRK08769 141 -SPGRYLWLISAQPARLPATIRSRC-QRLEFKLPPAHEALAWLLAQ----GV-SERAAQEALDAARGHPGLA 205 (319)
T ss_pred -CCCCeEEEEECChhhCchHHHhhh-eEeeCCCcCHHHHHHHHHHc----CC-ChHHHHHHHHHcCCCHHHH
Confidence 345777778888999999999999 57889999998877777642 22 2223445666666644433
No 238
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=98.51 E-value=9.5e-07 Score=91.26 Aligned_cols=69 Identities=33% Similarity=0.549 Sum_probs=46.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccchhh-----hhhHH-------HHHHHHHHHHhhcCCeEEEe
Q 001707 766 KGILLFGPPGTGKTLLAKALATEA---GANFISITGSTLTSKW-----FGDAE-------KLTKALFSFASKLAPVIIFV 830 (1023)
Q Consensus 766 ~gVLL~GPPGTGKT~LArAIA~el---g~~fi~vs~seL~s~~-----~ge~e-------~~I~~lF~~A~k~~PsIIfI 830 (1023)
.+|||+|++||||+++|++|-+.+ +.||+.++|+.+.... +|... .....+|..| ...+|||
T Consensus 23 ~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~LFG~~~~~~~~~~~~~~G~l~~A---~~GtL~L 99 (168)
T PF00158_consen 23 LPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESELFGHEKGAFTGARSDKKGLLEQA---NGGTLFL 99 (168)
T ss_dssp S-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHHHHEBCSSSSTTTSSEBEHHHHHT---TTSEEEE
T ss_pred CCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhhhhccccccccccccccCCceeec---cceEEee
Confidence 579999999999999999998876 4799999998874331 11100 0011333333 4589999
Q ss_pred ccchhhh
Q 001707 831 DEVDSLL 837 (1023)
Q Consensus 831 DEID~L~ 837 (1023)
|||+.|.
T Consensus 100 d~I~~L~ 106 (168)
T PF00158_consen 100 DEIEDLP 106 (168)
T ss_dssp ETGGGS-
T ss_pred cchhhhH
Confidence 9999984
No 239
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=98.51 E-value=5.8e-07 Score=105.40 Aligned_cols=203 Identities=20% Similarity=0.284 Sum_probs=123.2
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccch
Q 001707 727 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEA---GANFISITGSTLTS 803 (1023)
Q Consensus 727 vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~el---g~~fi~vs~seL~s 803 (1023)
..+.+++|.....+++.+.+... .....+|||+|++||||-.+|++|-..+ +.||+.++|..+..
T Consensus 138 ~~~~~liG~S~am~~l~~~i~kv------------A~s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~ 205 (464)
T COG2204 138 SLGGELVGESPAMQQLRRLIAKV------------APSDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPE 205 (464)
T ss_pred cccCCceecCHHHHHHHHHHHHH------------hCCCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCH
Confidence 34567888888888888877431 1223469999999999999999998877 56999999987643
Q ss_pred hh-----hhhH-------HHHHHHHHHHHhhcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHH-hhhcCcc--CCCC
Q 001707 804 KW-----FGDA-------EKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFM-SAWDGLR--SKES 868 (1023)
Q Consensus 804 ~~-----~ge~-------e~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL-~~Ldgl~--~~~~ 868 (1023)
.. +|.. ...-...|+.| ....||||||..|. .+..-+++..+- ..+..+. ..-.
T Consensus 206 ~l~ESELFGhekGAFTGA~~~r~G~fE~A---~GGTLfLDEI~~mp--------l~~Q~kLLRvLqe~~~~rvG~~~~i~ 274 (464)
T COG2204 206 NLLESELFGHEKGAFTGAITRRIGRFEQA---NGGTLFLDEIGEMP--------LELQVKLLRVLQEREFERVGGNKPIK 274 (464)
T ss_pred HHHHHHhhcccccCcCCcccccCcceeEc---CCceEEeeccccCC--------HHHHHHHHHHHHcCeeEecCCCcccc
Confidence 32 1100 00111123332 45899999999873 122222222111 1111121 1123
Q ss_pred ceEEEEEecCCCC-------CCcHHHHhhcCCceeecCCCHHHHHH----HHHHHHhc----ccc-CCccCHHHHHHHcc
Q 001707 869 QKILILGATNRPF-------DLDDAVIRRLPRRIYVDLPDAENRMK----ILRIFLAH----ESL-ESGFQFNELANATE 932 (1023)
Q Consensus 869 ~~VlVIaTTN~p~-------~Ld~aLlrRFd~~I~V~lPd~eeR~~----ILk~~L~~----~~l-~~dvdl~~LA~~Te 932 (1023)
-.|-||++||..= .+-+.|.-|+ .++.+..|...+|.+ ++.+++.. .+. ...+.-..++.+..
T Consensus 275 vdvRiIaaT~~dL~~~v~~G~FReDLyyRL-nV~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~~~~~~s~~a~~~L~~ 353 (464)
T COG2204 275 VDVRIIAATNRDLEEEVAAGRFREDLYYRL-NVVPLRLPPLRERKEDIPLLAEHFLKRFAAELGRPPKGFSPEALAALLA 353 (464)
T ss_pred eeeEEEeecCcCHHHHHHcCCcHHHHHhhh-ccceecCCcccccchhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHh
Confidence 4688999998641 2444555577 467888888877766 44455443 221 23455555555543
Q ss_pred -CC--cHHHHHHHHHHHHHHHHHH
Q 001707 933 -GY--SGSDLKNLCIAAAYRPVQE 953 (1023)
Q Consensus 933 -Gy--SgaDL~~L~~~Aa~~Airr 953 (1023)
.| +.++|+|+|+.|+..+-..
T Consensus 354 y~WPGNVREL~N~ver~~il~~~~ 377 (464)
T COG2204 354 YDWPGNVRELENVVERAVILSEGP 377 (464)
T ss_pred CCCChHHHHHHHHHHHHHhcCCcc
Confidence 23 4588999988887766433
No 240
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=98.50 E-value=1.7e-06 Score=108.73 Aligned_cols=99 Identities=10% Similarity=0.094 Sum_probs=65.4
Q ss_pred HHHHhhcCCeEEEEcCchhhhhhccCCccHHHHHHHHHHHHhcCCCCEEEEecccCCCCCccccccccccccccccccCC
Q 001707 478 CEVLHSTQPLIVYFPDSSLWLSRAVPRCNRKEFVRKVEEMFDQLSGPVVLICGQNKNETGPKEKEKFTMILPNFGRLAKL 557 (1023)
Q Consensus 478 ~e~~~~~~p~Iiff~di~~~~~~s~~~~~~~~~~s~l~~~~~~~~g~v~vI~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 557 (1023)
|..+....| ||||||||++.... + ....+.|++.||......++ |. ....
T Consensus 408 l~~~~~~~~-villDEidk~~~~~-~----~~~~~aLl~~ld~~~~~~f~-------d~-----------------~~~~ 457 (775)
T TIGR00763 408 LKKAKTKNP-LFLLDEIDKIGSSF-R----GDPASALLEVLDPEQNNAFS-------DH-----------------YLDV 457 (775)
T ss_pred HHHhCcCCC-EEEEechhhcCCcc-C----CCHHHHHHHhcCHHhcCccc-------cc-----------------cCCc
Confidence 445555667 78999999986431 2 23345666666632211111 10 0011
Q ss_pred CCc-chhhhcccccCCCcchHHHHhccccEEEEcCCChHHHHHHHHHHHHH
Q 001707 558 PLP-LQRLTEGLKATKRSDDNEIYNLFTNVLSIHPPKEEDLLRTFNKQVEE 607 (1023)
Q Consensus 558 ~~~-~~~LvIGmTNR~d~iDeaL~rrFe~~ieI~LPdee~Rl~Il~Iht~~ 607 (1023)
+.. -++++|++||+.+.|+++|++||+ .|+|+.|+.+.+.+|++.|+..
T Consensus 458 ~~d~s~v~~I~TtN~~~~i~~~L~~R~~-vi~~~~~~~~e~~~I~~~~l~~ 507 (775)
T TIGR00763 458 PFDLSKVIFIATANSIDTIPRPLLDRME-VIELSGYTEEEKLEIAKKYLIP 507 (775)
T ss_pred eeccCCEEEEEecCCchhCCHHHhCCee-EEecCCCCHHHHHHHHHHHHHH
Confidence 111 145678899999999999999996 6899999999999999999743
No 241
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=98.50 E-value=7.7e-07 Score=99.17 Aligned_cols=96 Identities=9% Similarity=0.110 Sum_probs=69.0
Q ss_pred HHHHHHHHhhcCCeEEEEcCchhhhhhccCCccHHHHHHHHHHHHhcCCCCEEEEecccCCCCCcccccccccccccccc
Q 001707 474 MEALCEVLHSTQPLIVYFPDSSLWLSRAVPRCNRKEFVRKVEEMFDQLSGPVVLICGQNKNETGPKEKEKFTMILPNFGR 553 (1023)
Q Consensus 474 i~~L~e~~~~~~p~Iiff~di~~~~~~s~~~~~~~~~~s~l~~~~~~~~g~v~vI~~~~~~d~~~~~~~~~~~~~~~~~~ 553 (1023)
+..+|+.+ .+-||||||++.+...........+..+.|...|+...+.++||++++..
T Consensus 113 ~~~~~~~a---~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~------------------- 170 (284)
T TIGR02880 113 TKEILKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKD------------------- 170 (284)
T ss_pred HHHHHHHc---cCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcH-------------------
Confidence 34556555 45799999999874322111223466778888888777888888655431
Q ss_pred ccCCCCcchhhhcccccCCC---cchHHHHhccccEEEEcCCChHHHHHHHHHHHHHH
Q 001707 554 LAKLPLPLQRLTEGLKATKR---SDDNEIYNLFTNVLSIHPPKEEDLLRTFNKQVEED 608 (1023)
Q Consensus 554 ~~~~~~~~~~LvIGmTNR~d---~iDeaL~rrFe~~ieI~LPdee~Rl~Il~Iht~~~ 608 (1023)
+.+ .++++|++||+.+|+|++++.+.+.+|++.++.+.
T Consensus 171 -----------------~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~~~ 211 (284)
T TIGR02880 171 -----------------RMDSFFESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLKEQ 211 (284)
T ss_pred -----------------HHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHHHh
Confidence 111 24799999999999999999999999999987663
No 242
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.47 E-value=7e-06 Score=92.98 Aligned_cols=144 Identities=15% Similarity=0.129 Sum_probs=96.8
Q ss_pred hHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC-----------------------
Q 001707 735 LEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGA----------------------- 791 (1023)
Q Consensus 735 le~vk~~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~elg~----------------------- 791 (1023)
+....+.|...+.. -+.++.+||+||.|+||+.+|.++|+.+-+
T Consensus 8 l~~~~~~l~~~~~~-------------~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HP 74 (319)
T PRK06090 8 LVPVWQNWKAGLDA-------------GRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHP 74 (319)
T ss_pred HHHHHHHHHHHHHc-------------CCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCC
Confidence 45666667665522 234578999999999999999999998722
Q ss_pred cEEEEeccccchhhhhhHHHHHHHHHHHHh----hcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhcCccCCC
Q 001707 792 NFISITGSTLTSKWFGDAEKLTKALFSFAS----KLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKE 867 (1023)
Q Consensus 792 ~fi~vs~seL~s~~~ge~e~~I~~lF~~A~----k~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~~ 867 (1023)
.|+.+.... .++.+ .-..++.+-..+. ...--|++||++|.|. ....|.||..++.-
T Consensus 75 D~~~i~p~~-~~~~I--~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~------------~~AaNaLLKtLEEP---- 135 (319)
T PRK06090 75 DLHVIKPEK-EGKSI--TVEQIRQCNRLAQESSQLNGYRLFVIEPADAMN------------ESASNALLKTLEEP---- 135 (319)
T ss_pred CEEEEecCc-CCCcC--CHHHHHHHHHHHhhCcccCCceEEEecchhhhC------------HHHHHHHHHHhcCC----
Confidence 133332211 00111 1223333333332 2334699999999983 23356777777663
Q ss_pred CceEEEEEecCCCCCCcHHHHhhcCCceeecCCCHHHHHHHHHH
Q 001707 868 SQKILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRI 911 (1023)
Q Consensus 868 ~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~V~lPd~eeR~~ILk~ 911 (1023)
+.++++|.+|+.++.|-+.+++|+ ..+.|++|+.++..+.+..
T Consensus 136 p~~t~fiL~t~~~~~lLpTI~SRC-q~~~~~~~~~~~~~~~L~~ 178 (319)
T PRK06090 136 APNCLFLLVTHNQKRLLPTIVSRC-QQWVVTPPSTAQAMQWLKG 178 (319)
T ss_pred CCCeEEEEEECChhhChHHHHhcc-eeEeCCCCCHHHHHHHHHH
Confidence 446888888999999999999999 5789999999888887754
No 243
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=98.45 E-value=2e-06 Score=94.30 Aligned_cols=112 Identities=13% Similarity=0.073 Sum_probs=72.5
Q ss_pred HHHHHHHhhcCCeEEEEcCchhhhhhccCCccHHHHHHHHHHHHhcCCCCEEEEecccCCCCCccccccccccccccccc
Q 001707 475 EALCEVLHSTQPLIVYFPDSSLWLSRAVPRCNRKEFVRKVEEMFDQLSGPVVLICGQNKNETGPKEKEKFTMILPNFGRL 554 (1023)
Q Consensus 475 ~~L~e~~~~~~p~Iiff~di~~~~~~s~~~~~~~~~~s~l~~~~~~~~g~v~vI~~~~~~d~~~~~~~~~~~~~~~~~~~ 554 (1023)
..+|+.+ .+.||||||++.+.+. .+.....+.+.+|...|+...+.++||++.+..+ .+
T Consensus 98 ~~~~~~a---~~~VL~IDE~~~L~~~-~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~-~~---------------- 156 (261)
T TIGR02881 98 REVIKKA---LGGVLFIDEAYSLARG-GEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDE-MD---------------- 156 (261)
T ss_pred HHHHHhc---cCCEEEEechhhhccC-CccchHHHHHHHHHHHHhccCCCEEEEecCCcch-hH----------------
Confidence 4455544 4579999999987542 1111223556677777888888887775543321 00
Q ss_pred cCCCCcchhhhcccccCCCcchHHHHhccccEEEEcCCChHHHHHHHHHHHHHHhhhhhhhhhHHHHHHH
Q 001707 555 AKLPLPLQRLTEGLKATKRSDDNEIYNLFTNVLSIHPPKEEDLLRTFNKQVEEDRRIVIYRSNLNELHKV 624 (1023)
Q Consensus 555 ~~~~~~~~~LvIGmTNR~d~iDeaL~rrFe~~ieI~LPdee~Rl~Il~Iht~~~~~~~~~~~~v~~l~~~ 624 (1023)
....++++|++||+.+++|+.++.+.+.+|++..+.. ......+.-+..+...
T Consensus 157 ----------------~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~-~~~~l~~~a~~~l~~~ 209 (261)
T TIGR02881 157 ----------------YFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVKE-REYKLTEEAKWKLREH 209 (261)
T ss_pred ----------------HHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHHH-cCCccCHHHHHHHHHH
Confidence 0124789999999999999999999999999977543 2223333334444443
No 244
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=98.45 E-value=1e-06 Score=102.52 Aligned_cols=204 Identities=19% Similarity=0.241 Sum_probs=119.3
Q ss_pred CCCcccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccc
Q 001707 724 EIGVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEA---GANFISITGST 800 (1023)
Q Consensus 724 e~~vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~el---g~~fi~vs~se 800 (1023)
++...+..|+|......++.+.|... . .....|||.|..||||-.+|++|-+.+ ..||+.++|+.
T Consensus 217 ~~~~~~~~iIG~S~am~~ll~~i~~V-------A-----~Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAA 284 (550)
T COG3604 217 EVVLEVGGIIGRSPAMRQLLKEIEVV-------A-----KSDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAA 284 (550)
T ss_pred chhcccccceecCHHHHHHHHHHHHH-------h-----cCCCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccc
Confidence 34567788999999888888877542 1 223579999999999999999998887 57999999987
Q ss_pred cchhhhh-hHHHHHHHHHHHHhhc--------CCeEEEeccchhhhhccCCCchhHHHHHHHHHHH-hhhcCccCC--CC
Q 001707 801 LTSKWFG-DAEKLTKALFSFASKL--------APVIIFVDEVDSLLGARGGAFEHEATRRMRNEFM-SAWDGLRSK--ES 868 (1023)
Q Consensus 801 L~s~~~g-e~e~~I~~lF~~A~k~--------~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL-~~Ldgl~~~--~~ 868 (1023)
+-..... +-=...+..|.-|... ..+-||+|||..|-- +...+++..|. ..+..+-.. -.
T Consensus 285 lPesLlESELFGHeKGAFTGA~~~r~GrFElAdGGTLFLDEIGelPL--------~lQaKLLRvLQegEieRvG~~r~ik 356 (550)
T COG3604 285 LPESLLESELFGHEKGAFTGAINTRRGRFELADGGTLFLDEIGELPL--------ALQAKLLRVLQEGEIERVGGDRTIK 356 (550)
T ss_pred cchHHHHHHHhcccccccccchhccCcceeecCCCeEechhhccCCH--------HHHHHHHHHHhhcceeecCCCceeE
Confidence 6433211 0111223344444322 347999999988731 12222221111 112222111 22
Q ss_pred ceEEEEEecCCCCCCcHHHHh---------hcCCceeecCCCHHHHHH----HHHHHHhc----ccc-CCccC---HHHH
Q 001707 869 QKILILGATNRPFDLDDAVIR---------RLPRRIYVDLPDAENRMK----ILRIFLAH----ESL-ESGFQ---FNEL 927 (1023)
Q Consensus 869 ~~VlVIaTTN~p~~Ld~aLlr---------RFd~~I~V~lPd~eeR~~----ILk~~L~~----~~l-~~dvd---l~~L 927 (1023)
..|-|||+||+ +|..++.. |++ ++.+..|...+|.. +.++++++ .+. ...+. ++.|
T Consensus 357 VDVRiIAATNR--DL~~~V~~G~FRaDLYyRLs-V~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~~l~ls~~Al~~L 433 (550)
T COG3604 357 VDVRVIAATNR--DLEEMVRDGEFRADLYYRLS-VFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRAILSLSAEALELL 433 (550)
T ss_pred EEEEEEeccch--hHHHHHHcCcchhhhhhccc-ccccCCCCcccCCccHHHHHHHHHHHHHHhcCCcccccCHHHHHHH
Confidence 35889999997 34444433 442 34455576666543 23333332 222 11122 2333
Q ss_pred HHHccCCcHHHHHHHHHHHHHHH
Q 001707 928 ANATEGYSGSDLKNLCIAAAYRP 950 (1023)
Q Consensus 928 A~~TeGySgaDL~~L~~~Aa~~A 950 (1023)
.+..---+.++|++++..|+..|
T Consensus 434 ~~y~wPGNVRELen~veRavlla 456 (550)
T COG3604 434 SSYEWPGNVRELENVVERAVLLA 456 (550)
T ss_pred HcCCCCCcHHHHHHHHHHHHHHh
Confidence 33222226799999999999977
No 245
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.44 E-value=1.8e-06 Score=99.28 Aligned_cols=163 Identities=25% Similarity=0.361 Sum_probs=102.5
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-------CCcEEEE---
Q 001707 727 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEA-------GANFISI--- 796 (1023)
Q Consensus 727 vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~el-------g~~fi~v--- 796 (1023)
..|.-+.|.+..+..|...... ..-.++||.|+.|||||++++|||.-+ |++|-.-
T Consensus 14 ~pf~aivGqd~lk~aL~l~av~--------------P~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~ 79 (423)
T COG1239 14 LPFTAIVGQDPLKLALGLNAVD--------------PQIGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDD 79 (423)
T ss_pred cchhhhcCchHHHHHHhhhhcc--------------cccceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCC
Confidence 4577788999998887543211 122579999999999999999999877 2222100
Q ss_pred ---ecc-------------------ccchhhhhhHHH----------HHH---HHHHH--HhhcCCeEEEeccchhhhhc
Q 001707 797 ---TGS-------------------TLTSKWFGDAEK----------LTK---ALFSF--ASKLAPVIIFVDEVDSLLGA 839 (1023)
Q Consensus 797 ---s~s-------------------eL~s~~~ge~e~----------~I~---~lF~~--A~k~~PsIIfIDEID~L~~~ 839 (1023)
.|. .++....+.++. .+. ..|.. ..+..-.||||||+..|.
T Consensus 80 P~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~AnRGIlYvDEvnlL~-- 157 (423)
T COG1239 80 PEEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARANRGILYVDEVNLLD-- 157 (423)
T ss_pred hhhhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhccCCEEEEecccccc--
Confidence 000 011111122222 222 11110 011234799999999883
Q ss_pred cCCCchhHHHHHHHHHHHhhh---------cCccCCCCceEEEEEecCCCC-CCcHHHHhhcCCceeecCC-CHHHHHHH
Q 001707 840 RGGAFEHEATRRMRNEFMSAW---------DGLRSKESQKILILGATNRPF-DLDDAVIRRLPRRIYVDLP-DAENRMKI 908 (1023)
Q Consensus 840 r~~~~~~e~~~ril~~LL~~L---------dgl~~~~~~~VlVIaTTN~p~-~Ld~aLlrRFd~~I~V~lP-d~eeR~~I 908 (1023)
.++.+.||..+ +|+.-.-.-++++|||+|+.. .|-+.|++||...+.+..| +.++|.+|
T Consensus 158 ----------d~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlDRfg~~v~~~~~~~~~~rv~I 227 (423)
T COG1239 158 ----------DHLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLDRFGLEVDTHYPLDLEERVEI 227 (423)
T ss_pred ----------HHHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchhhHhhhcceeeccCCCCHHHHHHH
Confidence 23333444332 344444556899999999864 4999999999999998776 67899999
Q ss_pred HHHHHhc
Q 001707 909 LRIFLAH 915 (1023)
Q Consensus 909 Lk~~L~~ 915 (1023)
.+..+.-
T Consensus 228 i~r~~~f 234 (423)
T COG1239 228 IRRRLAF 234 (423)
T ss_pred HHHHHHh
Confidence 9887654
No 246
>PRK08181 transposase; Validated
Probab=98.39 E-value=5.3e-07 Score=99.77 Aligned_cols=71 Identities=24% Similarity=0.315 Sum_probs=50.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccchhhhhhH-HHHHHHHHHHHhhcCCeEEEeccchhhh
Q 001707 765 CKGILLFGPPGTGKTLLAKALATEA---GANFISITGSTLTSKWFGDA-EKLTKALFSFASKLAPVIIFVDEVDSLL 837 (1023)
Q Consensus 765 ~~gVLL~GPPGTGKT~LArAIA~el---g~~fi~vs~seL~s~~~ge~-e~~I~~lF~~A~k~~PsIIfIDEID~L~ 837 (1023)
..+++|+||||||||+||.|+|+++ |..++.++..+++....... .......+... ..+.+|+|||++.+.
T Consensus 106 ~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l--~~~dLLIIDDlg~~~ 180 (269)
T PRK08181 106 GANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKL--DKFDLLILDDLAYVT 180 (269)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHH--hcCCEEEEecccccc
Confidence 3579999999999999999999765 78888888888776543211 11122333322 356899999998763
No 247
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=98.37 E-value=5.2e-06 Score=97.36 Aligned_cols=167 Identities=21% Similarity=0.307 Sum_probs=99.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccchhhhhhHHHHHHHHHHH---------------HhhcCCeE
Q 001707 766 KGILLFGPPGTGKTLLAKALATEA---GANFISITGSTLTSKWFGDAEKLTKALFSF---------------ASKLAPVI 827 (1023)
Q Consensus 766 ~gVLL~GPPGTGKT~LArAIA~el---g~~fi~vs~seL~s~~~ge~e~~I~~lF~~---------------A~k~~PsI 827 (1023)
.+|+|+|++||||+++|+++.... +.+|+.++|..+...... ..+|.. ......++
T Consensus 163 ~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~~~------~~lfg~~~~~~~~~~~~~~g~~~~a~~gt 236 (445)
T TIGR02915 163 ITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLLE------SELFGYEKGAFTGAVKQTLGKIEYAHGGT 236 (445)
T ss_pred CCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHHHH------HHhcCCCCCCcCCCccCCCCceeECCCCE
Confidence 469999999999999999998876 468999999887432211 122221 11234689
Q ss_pred EEeccchhhhhccCCCchhHHHHHHHHHHHhhhcCcc-------CCCCceEEEEEecCCC-------CCCcHHHHhhcCC
Q 001707 828 IFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLR-------SKESQKILILGATNRP-------FDLDDAVIRRLPR 893 (1023)
Q Consensus 828 IfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~-------~~~~~~VlVIaTTN~p-------~~Ld~aLlrRFd~ 893 (1023)
||||||+.|.. .. ...|+..++.-. ......+.||+||+.. ..+.+.|..|+.
T Consensus 237 l~l~~i~~l~~--------~~----q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~~l~- 303 (445)
T TIGR02915 237 LFLDEIGDLPL--------NL----QAKLLRFLQERVIERLGGREEIPVDVRIVCATNQDLKRMIAEGTFREDLFYRIA- 303 (445)
T ss_pred EEEechhhCCH--------HH----HHHHHHHHhhCeEEeCCCCceeeeceEEEEecCCCHHHHHHcCCccHHHHHHhc-
Confidence 99999999842 22 223333332110 0111256788888764 346666777773
Q ss_pred ceeecCCCHHHHHH----HHHHHHhcc----ccC-CccC---HHHHHHHccCCcHHHHHHHHHHHHHHHH
Q 001707 894 RIYVDLPDAENRMK----ILRIFLAHE----SLE-SGFQ---FNELANATEGYSGSDLKNLCIAAAYRPV 951 (1023)
Q Consensus 894 ~I~V~lPd~eeR~~----ILk~~L~~~----~l~-~dvd---l~~LA~~TeGySgaDL~~L~~~Aa~~Ai 951 (1023)
.+.+..|...+|.+ +++.++... +.. ..+. +..|....=--+.++|+++++.|+..+-
T Consensus 304 ~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNvreL~~~i~~a~~~~~ 373 (445)
T TIGR02915 304 EISITIPPLRSRDGDAVLLANAFLERFARELKRKTKGFTDDALRALEAHAWPGNVRELENKVKRAVIMAE 373 (445)
T ss_pred cceecCCCchhchhhHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHhCCCCChHHHHHHHHHHHHHhCC
Confidence 46677777777755 444444432 111 1233 2333322212356899999988886543
No 248
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.32 E-value=3e-06 Score=88.90 Aligned_cols=179 Identities=22% Similarity=0.257 Sum_probs=91.9
Q ss_pred cChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC---cEEEEec-cccc----hh
Q 001707 733 GALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGA---NFISITG-STLT----SK 804 (1023)
Q Consensus 733 gGle~vk~~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~elg~---~fi~vs~-seL~----s~ 804 (1023)
.|.+...+.|.+++.. .+...++|+||.|+|||+|++.+.....- ..+.+.. .... ..
T Consensus 2 ~gR~~el~~l~~~l~~--------------~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~ 67 (234)
T PF01637_consen 2 FGREKELEKLKELLES--------------GPSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRS 67 (234)
T ss_dssp -S-HHHHHHHHHCHHH----------------SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh--------------hcCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHH
Confidence 3556666666665422 12357999999999999999999998832 1111111 1000 00
Q ss_pred h------------------------------hhhHHHHHHHHHHHHhhc-CCeEEEeccchhhh-hccCCCchhHHHHHH
Q 001707 805 W------------------------------FGDAEKLTKALFSFASKL-APVIIFVDEVDSLL-GARGGAFEHEATRRM 852 (1023)
Q Consensus 805 ~------------------------------~ge~e~~I~~lF~~A~k~-~PsIIfIDEID~L~-~~r~~~~~~e~~~ri 852 (1023)
. .......+..++....+. ...||+|||++.+. .... ...+
T Consensus 68 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~-------~~~~ 140 (234)
T PF01637_consen 68 FIEETSLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEE-------DKDF 140 (234)
T ss_dssp HHHHHHHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTT-------THHH
T ss_pred HHHHHHHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccc-------hHHH
Confidence 0 011234455555555443 34899999999997 2221 1234
Q ss_pred HHHHHhhhcCccCCCCceEEEEEecCCCCC------CcHHHHhhcCCceeecCCCHHHHHHHHHHHHhccc-c-CCccCH
Q 001707 853 RNEFMSAWDGLRSKESQKILILGATNRPFD------LDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHES-L-ESGFQF 924 (1023)
Q Consensus 853 l~~LL~~Ldgl~~~~~~~VlVIaTTN~p~~------Ld~aLlrRFd~~I~V~lPd~eeR~~ILk~~L~~~~-l-~~dvdl 924 (1023)
...|...++...... ...+|++++. ... -...+..|+.. +.+++.+.++..++++..+.... + .++.++
T Consensus 141 ~~~l~~~~~~~~~~~-~~~~v~~~S~-~~~~~~~~~~~~~~~~~~~~-~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~~ 217 (234)
T PF01637_consen 141 LKSLRSLLDSLLSQQ-NVSIVITGSS-DSLMEEFLDDKSPLFGRFSH-IELKPLSKEEAREFLKELFKELIKLPFSDEDI 217 (234)
T ss_dssp HHHHHHHHHH----T-TEEEEEEESS-HHHHHHTT-TTSTTTT---E-EEE----HHHHHHHHHHHHHCC------HHHH
T ss_pred HHHHHHHHhhccccC-CceEEEECCc-hHHHHHhhcccCccccccce-EEEeeCCHHHHHHHHHHHHHHhhcccCCHHHH
Confidence 445555555432222 2233333333 111 11234456755 88999999999999998776541 1 256678
Q ss_pred HHHHHHccCCc
Q 001707 925 NELANATEGYS 935 (1023)
Q Consensus 925 ~~LA~~TeGyS 935 (1023)
+.+...+.|+.
T Consensus 218 ~~i~~~~gG~P 228 (234)
T PF01637_consen 218 EEIYSLTGGNP 228 (234)
T ss_dssp HHHHHHHTT-H
T ss_pred HHHHHHhCCCH
Confidence 88888888844
No 249
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.32 E-value=1.2e-05 Score=96.53 Aligned_cols=199 Identities=17% Similarity=0.203 Sum_probs=113.4
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccc----
Q 001707 727 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLT---- 802 (1023)
Q Consensus 727 vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~elg~~fi~vs~seL~---- 802 (1023)
.+.+|+.-..+..++++.++...+. + ..+.+-+||+||||||||++++.+|+++|+.++....+...
T Consensus 16 ~~~~eLavhkkKv~eV~~wl~~~~~--------~-~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~Ew~np~~~~~~~ 86 (519)
T PF03215_consen 16 KTLDELAVHKKKVEEVRSWLEEMFS--------G-SSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQEWINPVSFRESD 86 (519)
T ss_pred CCHHHhhccHHHHHHHHHHHHHHhc--------c-CCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEEecCCCCccccc
Confidence 4566777677777777777753211 1 12345688999999999999999999999988875433221
Q ss_pred ---hhhhhhH---H---HHHHHHHHH-----Hhh-----------cCCeEEEeccchhhhhccCCCchhHHHHHHHHHHH
Q 001707 803 ---SKWFGDA---E---KLTKALFSF-----ASK-----------LAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFM 857 (1023)
Q Consensus 803 ---s~~~ge~---e---~~I~~lF~~-----A~k-----------~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL 857 (1023)
..+.+.. . ..+ ..|.. ++. ..+.||+|+|+-.++.. ...++...|.
T Consensus 87 ~~~~d~~s~~~~~~~f~sq~-~~F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~~~--------~~~~f~~~L~ 157 (519)
T PF03215_consen 87 NQEDDFESDFNKFDEFLSQS-DKFSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVFHR--------DTSRFREALR 157 (519)
T ss_pred cccccccccccccccccchh-hhhccccccccccccccccCCCcCCCceEEEeeccccccch--------hHHHHHHHHH
Confidence 1111100 0 111 11221 111 24679999999755321 1133333333
Q ss_pred hhhcCccCCCCc-eEEEEEe-c------CCC--------CCCcHHHHhhc-CCceeecCCCHHHHHHHHHHHHhcc----
Q 001707 858 SAWDGLRSKESQ-KILILGA-T------NRP--------FDLDDAVIRRL-PRRIYVDLPDAENRMKILRIFLAHE---- 916 (1023)
Q Consensus 858 ~~Ldgl~~~~~~-~VlVIaT-T------N~p--------~~Ld~aLlrRF-d~~I~V~lPd~eeR~~ILk~~L~~~---- 916 (1023)
..+..- .. ++++|.| + +.. ..+++.++... -..|.|.+-...-..+.|+.++..+
T Consensus 158 ~~l~~~----~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i~~I~FNpIa~T~mkKaL~rI~~~E~~~~ 233 (519)
T PF03215_consen 158 QYLRSS----RCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGITRIKFNPIAPTFMKKALKRILKKEARSS 233 (519)
T ss_pred HHHHcC----CCCCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCceEEEecCCCHHHHHHHHHHHHHHHhhhh
Confidence 333221 12 5666666 1 111 13566776622 2467888877777777777776654
Q ss_pred -cc--CCc-cC-HHHHHHHccCCcHHHHHHHHHHHHHHHH
Q 001707 917 -SL--ESG-FQ-FNELANATEGYSGSDLKNLCIAAAYRPV 951 (1023)
Q Consensus 917 -~l--~~d-vd-l~~LA~~TeGySgaDL~~L~~~Aa~~Ai 951 (1023)
.. .++ .. ++.|+..+. +||+.++..--+.+.
T Consensus 234 ~~~~~~p~~~~~l~~I~~~s~----GDIRsAIn~LQf~~~ 269 (519)
T PF03215_consen 234 SGKNKVPDKQSVLDSIAESSN----GDIRSAINNLQFWCL 269 (519)
T ss_pred cCCccCCChHHHHHHHHHhcC----chHHHHHHHHHHHhc
Confidence 11 111 22 566766655 499988877666666
No 250
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=98.31 E-value=1.5e-05 Score=87.60 Aligned_cols=52 Identities=23% Similarity=0.226 Sum_probs=37.2
Q ss_pred CCCCCcHHHHhhcCCceeecCCCHHHHHHHHHHHHhccccC-CccCHHHHHHHc
Q 001707 879 RPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLE-SGFQFNELANAT 931 (1023)
Q Consensus 879 ~p~~Ld~aLlrRFd~~I~V~lPd~eeR~~ILk~~L~~~~l~-~dvdl~~LA~~T 931 (1023)
.|+.+++.+++|+ .+|..-+.+.++..+|++...+.+++. .+..+..|+...
T Consensus 347 sPhGip~dllDRl-~Iirt~~y~~~e~r~Ii~~Ra~~E~l~~~e~a~~~l~~~g 399 (456)
T KOG1942|consen 347 SPHGIPPDLLDRL-LIIRTLPYDEEEIRQIIKIRAQVEGLQVEEEALDLLAEIG 399 (456)
T ss_pred CCCCCCHHHhhhe-eEEeeccCCHHHHHHHHHHHHhhhcceecHHHHHHHHhhc
Confidence 4567889999998 567777778888899999888877664 233345555443
No 251
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=98.30 E-value=1.2e-05 Score=94.08 Aligned_cols=82 Identities=24% Similarity=0.325 Sum_probs=61.5
Q ss_pred HHHHHHhhcccCCCcccccccccccccchhhHHHHHHhhhccccCccchhhccccccCCCCceeeccCCChhHHHHHHHH
Q 001707 162 RFKNEFSRRIVPWEKINISWDTFPYYINENTKSLLVECVGSHLKHKKFTATFGARLTSSSGRILLRSVPGTELYRERLIR 241 (1023)
Q Consensus 162 ~~~~~~~~~v~~~~~~~vsf~~fpyylse~tk~~L~~~~~~hl~~~~~~~~~~~~l~~~~~~iLL~~~~gsE~y~e~L~k 241 (1023)
.+++.|.+.||-. |..|.+|..|+|-|.++-....+-..+.....+.|||.|||| ..+++|||
T Consensus 64 ~i~~~L~~~ViGq---------------~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~G--tGKT~lAr 126 (412)
T PRK05342 64 EIKAHLDQYVIGQ---------------ERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTG--SGKTLLAQ 126 (412)
T ss_pred HHHHHHhhHeeCh---------------HHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCC--CCHHHHHH
Confidence 3666666665544 899999999999888874321000013444667899999999 89999999
Q ss_pred HHHhhcCCcEEEeecCCCC
Q 001707 242 ALARELQVPLLVLDSSVLA 260 (1023)
Q Consensus 242 AlA~~~~a~ll~~ds~~l~ 260 (1023)
+||+.+++++..+|.+.+.
T Consensus 127 ~lA~~l~~pf~~id~~~l~ 145 (412)
T PRK05342 127 TLARILDVPFAIADATTLT 145 (412)
T ss_pred HHHHHhCCCceecchhhcc
Confidence 9999999999999987443
No 252
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.29 E-value=5.5e-06 Score=94.11 Aligned_cols=132 Identities=17% Similarity=0.185 Sum_probs=87.0
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCC-------------------------cEEEEecccc---chhhhh-hHHHHH
Q 001707 763 RPCKGILLFGPPGTGKTLLAKALATEAGA-------------------------NFISITGSTL---TSKWFG-DAEKLT 813 (1023)
Q Consensus 763 ~p~~gVLL~GPPGTGKT~LArAIA~elg~-------------------------~fi~vs~seL---~s~~~g-e~e~~I 813 (1023)
+.++.+||+||+|+|||++|+++|+.+.+ .|+.+.+..- .++... -.-..|
T Consensus 19 r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id~i 98 (325)
T PRK08699 19 RRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDAV 98 (325)
T ss_pred CcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHHHH
Confidence 34578999999999999999999998732 2344433210 000000 013345
Q ss_pred HHHHHHHhh----cCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhcCccCCCCceEEEEEecCCCCCCcHHHHh
Q 001707 814 KALFSFASK----LAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPFDLDDAVIR 889 (1023)
Q Consensus 814 ~~lF~~A~k----~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlr 889 (1023)
+.+...+.. ...-|++||+++.+.. ...+.++..++... ..+.+|.+|+.++.+.+.+.+
T Consensus 99 R~l~~~~~~~p~~~~~kV~iiEp~~~Ld~------------~a~naLLk~LEep~----~~~~~Ilvth~~~~ll~ti~S 162 (325)
T PRK08699 99 REIIDNVYLTSVRGGLRVILIHPAESMNL------------QAANSLLKVLEEPP----PQVVFLLVSHAADKVLPTIKS 162 (325)
T ss_pred HHHHHHHhhCcccCCceEEEEechhhCCH------------HHHHHHHHHHHhCc----CCCEEEEEeCChHhChHHHHH
Confidence 555555443 2346999999998831 22455666665542 235566688888899999999
Q ss_pred hcCCceeecCCCHHHHHHHHHH
Q 001707 890 RLPRRIYVDLPDAENRMKILRI 911 (1023)
Q Consensus 890 RFd~~I~V~lPd~eeR~~ILk~ 911 (1023)
|+ ..+.|++|+.++....|..
T Consensus 163 Rc-~~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 163 RC-RKMVLPAPSHEEALAYLRE 183 (325)
T ss_pred Hh-hhhcCCCCCHHHHHHHHHh
Confidence 99 6788999999888877754
No 253
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=98.28 E-value=6.8e-06 Score=97.11 Aligned_cols=191 Identities=20% Similarity=0.274 Sum_probs=109.7
Q ss_pred cccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccchhh
Q 001707 729 FDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEA---GANFISITGSTLTSKW 805 (1023)
Q Consensus 729 fdDIgGle~vk~~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~el---g~~fi~vs~seL~s~~ 805 (1023)
+.++.|.....+.+.+.+.. . ......|||.|++|||||++|+++...+ +.+|+.++|..+....
T Consensus 137 ~~~lig~s~~~~~l~~~~~~-------~-----~~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~ 204 (469)
T PRK10923 137 TTDIIGEAPAMQDVFRIIGR-------L-----SRSSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDL 204 (469)
T ss_pred cccceecCHHHHHHHHHHHH-------H-----hccCCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHH
Confidence 34566665555555554422 1 1223469999999999999999999886 5799999998874322
Q ss_pred hhhHHHHHHHHHHHH---------------hhcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhcCcc------
Q 001707 806 FGDAEKLTKALFSFA---------------SKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLR------ 864 (1023)
Q Consensus 806 ~ge~e~~I~~lF~~A---------------~k~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~------ 864 (1023)
.-..+|... .....+.||||||+.|... . ...|+..++.-.
T Consensus 205 ------~~~~lfg~~~g~~~~~~~~~~g~~~~a~~Gtl~l~~i~~l~~~--------~----q~~L~~~l~~~~~~~~~~ 266 (469)
T PRK10923 205 ------IESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGDMPLD--------V----QTRLLRVLADGQFYRVGG 266 (469)
T ss_pred ------HHHHhcCCCCCCCCCCCcCCCCCeeECCCCEEEEeccccCCHH--------H----HHHHHHHHhcCcEEeCCC
Confidence 112222211 1223578999999998422 2 223333333211
Q ss_pred -CCCCceEEEEEecCCC-------CCCcHHHHhhcCCceeecCCCHHHHHH----HHHHHHhccc----cC-CccC---H
Q 001707 865 -SKESQKILILGATNRP-------FDLDDAVIRRLPRRIYVDLPDAENRMK----ILRIFLAHES----LE-SGFQ---F 924 (1023)
Q Consensus 865 -~~~~~~VlVIaTTN~p-------~~Ld~aLlrRFd~~I~V~lPd~eeR~~----ILk~~L~~~~----l~-~dvd---l 924 (1023)
......+.||+||+.. ..+.+.|..||. .+.+..|...+|.+ ++.+++.... .. ..+. +
T Consensus 267 ~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~~l~-~~~i~~PpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~ 345 (469)
T PRK10923 267 YAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLN-VIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETE 345 (469)
T ss_pred CCeEEeeEEEEEeCCCCHHHHHHcCCchHHHHHHhc-ceeecCCCcccchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHH
Confidence 0112346788888653 246677888884 45566666555543 5555554321 11 1122 2
Q ss_pred HHHHHHccCCcHHHHHHHHHHHHHHH
Q 001707 925 NELANATEGYSGSDLKNLCIAAAYRP 950 (1023)
Q Consensus 925 ~~LA~~TeGySgaDL~~L~~~Aa~~A 950 (1023)
..|....=--+.++|+++++.|+..+
T Consensus 346 ~~L~~~~wpgNv~eL~~~i~~~~~~~ 371 (469)
T PRK10923 346 AALTRLAWPGNVRQLENTCRWLTVMA 371 (469)
T ss_pred HHHHhCCCCChHHHHHHHHHHHHHhC
Confidence 33332222235699999998887654
No 254
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=98.27 E-value=3.6e-07 Score=106.21 Aligned_cols=48 Identities=42% Similarity=0.643 Sum_probs=40.0
Q ss_pred CcccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 001707 726 GVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEA 789 (1023)
Q Consensus 726 ~vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~el 789 (1023)
...|.||.|++..|..|.... .+ .+++|++||||||||+||+.+..-+
T Consensus 175 ~~D~~DV~GQ~~AKrAleiAA-----------AG-----gHnLl~~GpPGtGKTmla~Rl~~lL 222 (490)
T COG0606 175 APDFKDVKGQEQAKRALEIAA-----------AG-----GHNLLLVGPPGTGKTMLASRLPGLL 222 (490)
T ss_pred CcchhhhcCcHHHHHHHHHHH-----------hc-----CCcEEEecCCCCchHHhhhhhcccC
Confidence 357999999999999998765 23 3789999999999999999886543
No 255
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.27 E-value=4.7e-06 Score=94.79 Aligned_cols=69 Identities=23% Similarity=0.417 Sum_probs=48.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccchhhhhhH---HHHHHHHHHHHhhcCCeEEEeccchhh
Q 001707 766 KGILLFGPPGTGKTLLAKALATEA---GANFISITGSTLTSKWFGDA---EKLTKALFSFASKLAPVIIFVDEVDSL 836 (1023)
Q Consensus 766 ~gVLL~GPPGTGKT~LArAIA~el---g~~fi~vs~seL~s~~~ge~---e~~I~~lF~~A~k~~PsIIfIDEID~L 836 (1023)
.+++|+||+|||||+||.|||+++ |..++.++..+++....... .......+.. -....+|+|||+...
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~--l~~~DLLIIDDlG~e 258 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDL--LINCDLLIIDDLGTE 258 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHH--hccCCEEEEeccCCC
Confidence 579999999999999999999987 78899998888765442210 0011111222 224589999999775
No 256
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.26 E-value=2.3e-05 Score=85.84 Aligned_cols=175 Identities=21% Similarity=0.305 Sum_probs=115.3
Q ss_pred ccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-C--CcEEEEec------
Q 001707 728 RFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEA-G--ANFISITG------ 798 (1023)
Q Consensus 728 tfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~el-g--~~fi~vs~------ 798 (1023)
+++.+.+.++....|+.+... ....++|+|||+|+||-+.+.++.+++ | +.=..+..
T Consensus 11 sl~~l~~~~e~~~~Lksl~~~--------------~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tp 76 (351)
T KOG2035|consen 11 SLDELIYHEELANLLKSLSST--------------GDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTP 76 (351)
T ss_pred hhhhcccHHHHHHHHHHhccc--------------CCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecC
Confidence 466677788888888775521 122579999999999999999999988 3 21111100
Q ss_pred -------cccchhh--------hhh-HHHHHHHHHHHHhhcCC---------eEEEeccchhhhhccCCCchhHHHHHHH
Q 001707 799 -------STLTSKW--------FGD-AEKLTKALFSFASKLAP---------VIIFVDEVDSLLGARGGAFEHEATRRMR 853 (1023)
Q Consensus 799 -------seL~s~~--------~ge-~e~~I~~lF~~A~k~~P---------sIIfIDEID~L~~~r~~~~~~e~~~ril 853 (1023)
+.+.+.| .|. ..-.+..+..+..+.+| -|++|.|+|.|.... ..+.++.+
T Consensus 77 S~kklEistvsS~yHlEitPSDaG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT~dA-----Q~aLRRTM 151 (351)
T KOG2035|consen 77 SKKKLEISTVSSNYHLEITPSDAGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELTRDA-----QHALRRTM 151 (351)
T ss_pred CCceEEEEEecccceEEeChhhcCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhhHHH-----HHHHHHHH
Confidence 0111111 121 23344555554433332 599999999995332 23445544
Q ss_pred HHHHhhhcCccCCCCceEEEEEecCCCCCCcHHHHhhcCCceeecCCCHHHHHHHHHHHHhccccCCc-cCHHHHHHHcc
Q 001707 854 NEFMSAWDGLRSKESQKILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLESG-FQFNELANATE 932 (1023)
Q Consensus 854 ~~LL~~Ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~V~lPd~eeR~~ILk~~L~~~~l~~d-vdl~~LA~~Te 932 (1023)
..+. ...-+|..+|....+-+++++|+ ..|.++.|+.++...++...+.++++.-. .-+..+|+.++
T Consensus 152 EkYs-----------~~~RlIl~cns~SriIepIrSRC-l~iRvpaps~eeI~~vl~~v~~kE~l~lp~~~l~rIa~kS~ 219 (351)
T KOG2035|consen 152 EKYS-----------SNCRLILVCNSTSRIIEPIRSRC-LFIRVPAPSDEEITSVLSKVLKKEGLQLPKELLKRIAEKSN 219 (351)
T ss_pred HHHh-----------cCceEEEEecCcccchhHHhhhe-eEEeCCCCCHHHHHHHHHHHHHHhcccCcHHHHHHHHHHhc
Confidence 4432 24557778899999999999998 57899999999999999999998887633 33566777666
Q ss_pred C
Q 001707 933 G 933 (1023)
Q Consensus 933 G 933 (1023)
|
T Consensus 220 ~ 220 (351)
T KOG2035|consen 220 R 220 (351)
T ss_pred c
Confidence 5
No 257
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.26 E-value=3.9e-06 Score=104.76 Aligned_cols=170 Identities=18% Similarity=0.149 Sum_probs=94.3
Q ss_pred cccChHHHHHHHHHHHHcccCCchhhc---cC----CCCCCCceEEEEcCCCChHHHHHHHHHHHhC-------CcEEEE
Q 001707 731 DIGALEDVKKALNELVILPMRRPDLFS---RG----NLLRPCKGILLFGPPGTGKTLLAKALATEAG-------ANFISI 796 (1023)
Q Consensus 731 DIgGle~vk~~L~e~V~~pL~~pelf~---~~----gli~p~~gVLL~GPPGTGKT~LArAIA~elg-------~~fi~v 796 (1023)
.|.|.+.+|..|.-.+.--......+. .+ ..++...+|||.|+||||||.+|+++++... .++..+
T Consensus 451 ~I~G~e~vK~ailL~L~gG~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~v 530 (915)
T PTZ00111 451 SIKARNNVKIGLLCQLFSGNKNSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSSV 530 (915)
T ss_pred eEECCHHHHHHHHHHHhcCCccccccccccccccccccccCCceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCccc
Confidence 467899999888655533221110010 00 1234456899999999999999999998653 334433
Q ss_pred eccccchhhhhh-HHHHH--HHHHHHHhhcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhh----c--CccCCC
Q 001707 797 TGSTLTSKWFGD-AEKLT--KALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAW----D--GLRSKE 867 (1023)
Q Consensus 797 s~seL~s~~~ge-~e~~I--~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~L----d--gl~~~~ 867 (1023)
.+..... +.+. ..... ...+ ......+++|||++.+... .+..+.++|..= . |+...-
T Consensus 531 gLTa~~~-~~d~~tG~~~le~GaL---vlAdgGtL~IDEidkms~~---------~Q~aLlEaMEqqtIsI~KaGi~~tL 597 (915)
T PTZ00111 531 GLTASIK-FNESDNGRAMIQPGAV---VLANGGVCCIDELDKCHNE---------SRLSLYEVMEQQTVTIAKAGIVATL 597 (915)
T ss_pred cccchhh-hcccccCcccccCCcE---EEcCCCeEEecchhhCCHH---------HHHHHHHHHhCCEEEEecCCcceec
Confidence 3322111 0000 00000 0001 1123479999999998321 112222222110 0 222223
Q ss_pred CceEEEEEecCCCC-------------CCcHHHHhhcCCcee-ecCCCHHHHHHHHHHHH
Q 001707 868 SQKILILGATNRPF-------------DLDDAVIRRLPRRIY-VDLPDAENRMKILRIFL 913 (1023)
Q Consensus 868 ~~~VlVIaTTN~p~-------------~Ld~aLlrRFd~~I~-V~lPd~eeR~~ILk~~L 913 (1023)
+.++.||||+|+.. .|++++++||+.++. ++.|+.+.-..|-.+++
T Consensus 598 ~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLSRFDLIf~l~D~~d~~~D~~lA~hI~ 657 (915)
T PTZ00111 598 KAETAILASCNPINSRYNKNKAVIENINISPSLFTRFDLIYLVLDHIDQDTDQLISLSIA 657 (915)
T ss_pred CCCeEEEEEcCCcccccCcccCcccccCCChHHhhhhcEEEEecCCCChHHHHHHHHHHH
Confidence 45789999999742 278999999987644 46788776666655554
No 258
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.25 E-value=3e-06 Score=95.49 Aligned_cols=70 Identities=20% Similarity=0.310 Sum_probs=49.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccchhhhhhHH-HHHHHHHHHHhhcCCeEEEeccchhh
Q 001707 765 CKGILLFGPPGTGKTLLAKALATEA---GANFISITGSTLTSKWFGDAE-KLTKALFSFASKLAPVIIFVDEVDSL 836 (1023)
Q Consensus 765 ~~gVLL~GPPGTGKT~LArAIA~el---g~~fi~vs~seL~s~~~ge~e-~~I~~lF~~A~k~~PsIIfIDEID~L 836 (1023)
.++++|+||+|||||+||.|+|+++ |.++..+..++++........ ..+...+... ....||+|||+..-
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~~~~~~~~~~l~~l--~~~dlLiIDDiG~e 229 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNSISDGSVKEKIDAV--KEAPVLMLDDIGAE 229 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHhcCcHHHHHHHh--cCCCEEEEecCCCc
Confidence 4689999999999999999999998 788888888877654432210 1122222222 24689999999753
No 259
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.24 E-value=5.3e-06 Score=91.20 Aligned_cols=71 Identities=28% Similarity=0.413 Sum_probs=50.9
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccchhhhhhHHH-H-HHHHHHHHhhcCCeEEEeccchhh
Q 001707 764 PCKGILLFGPPGTGKTLLAKALATEA---GANFISITGSTLTSKWFGDAEK-L-TKALFSFASKLAPVIIFVDEVDSL 836 (1023)
Q Consensus 764 p~~gVLL~GPPGTGKT~LArAIA~el---g~~fi~vs~seL~s~~~ge~e~-~-I~~lF~~A~k~~PsIIfIDEID~L 836 (1023)
.+.+++|+||||+|||+||.|||+++ |..+..++.++++......... . -..+... -....+|+|||+...
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~--l~~~dlLIiDDlG~~ 179 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKLLRE--LKKVDLLIIDDIGYE 179 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCchHHHHHHH--hhcCCEEEEecccCc
Confidence 34689999999999999999999988 7899999999887764332211 1 1111111 124579999999775
No 260
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=98.24 E-value=1.4e-05 Score=93.97 Aligned_cols=166 Identities=21% Similarity=0.272 Sum_probs=97.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccchhhhhhHHHHHHHHHHH---------------HhhcCCeE
Q 001707 766 KGILLFGPPGTGKTLLAKALATEA---GANFISITGSTLTSKWFGDAEKLTKALFSF---------------ASKLAPVI 827 (1023)
Q Consensus 766 ~gVLL~GPPGTGKT~LArAIA~el---g~~fi~vs~seL~s~~~ge~e~~I~~lF~~---------------A~k~~PsI 827 (1023)
..||++|++||||+++|+++...+ +.+|+.++|..+..... -..+|.. .......+
T Consensus 167 ~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~~------~~~lfg~~~~~~~~~~~~~~g~~~~a~~gt 240 (457)
T PRK11361 167 ASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLL------ESELFGHEKGAFTGAQTLRQGLFERANEGT 240 (457)
T ss_pred cEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHHH------HHHhcCCCCCCCCCCCCCCCCceEECCCCE
Confidence 469999999999999999998775 57999999988743221 1122221 11223579
Q ss_pred EEeccchhhhhccCCCchhHHHHHHHHHHHhhhcCcc-------CCCCceEEEEEecCCC-------CCCcHHHHhhcCC
Q 001707 828 IFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLR-------SKESQKILILGATNRP-------FDLDDAVIRRLPR 893 (1023)
Q Consensus 828 IfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~-------~~~~~~VlVIaTTN~p-------~~Ld~aLlrRFd~ 893 (1023)
||||||+.|... . ...|+..++... ......+.||+||+.. ..+.+.+..|+.
T Consensus 241 l~ld~i~~l~~~--------~----q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~l~~~~~~g~~~~~l~~~l~- 307 (457)
T PRK11361 241 LLLDEIGEMPLV--------L----QAKLLRILQEREFERIGGHQTIKVDIRIIAATNRDLQAMVKEGTFREDLFYRLN- 307 (457)
T ss_pred EEEechhhCCHH--------H----HHHHHHHHhcCcEEeCCCCceeeeceEEEEeCCCCHHHHHHcCCchHHHHHHhc-
Confidence 999999998422 2 223333332210 0111347788888754 235566666773
Q ss_pred ceeecCCCHHHHHH----HHHHHHhcccc----C-CccCHHHHHHHcc---CCcHHHHHHHHHHHHHHH
Q 001707 894 RIYVDLPDAENRMK----ILRIFLAHESL----E-SGFQFNELANATE---GYSGSDLKNLCIAAAYRP 950 (1023)
Q Consensus 894 ~I~V~lPd~eeR~~----ILk~~L~~~~l----~-~dvdl~~LA~~Te---GySgaDL~~L~~~Aa~~A 950 (1023)
.+.+..|...+|.+ ++..++..... . ..++-+.+..... --+.++|++++..|+..+
T Consensus 308 ~~~i~~ppLreR~~di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNv~eL~~~~~~~~~~~ 376 (457)
T PRK11361 308 VIHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMAMSLLTAWSWPGNIRELSNVIERAVVMN 376 (457)
T ss_pred cceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHcCCCCCcHHHHHHHHHHHHHhC
Confidence 46677777777654 33444443211 1 1233332322222 236799999998887644
No 261
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.24 E-value=6.4e-07 Score=93.30 Aligned_cols=71 Identities=31% Similarity=0.455 Sum_probs=47.2
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccchhhhhhH-HHHHHHHHHHHhhcCCeEEEeccchh
Q 001707 763 RPCKGILLFGPPGTGKTLLAKALATEA---GANFISITGSTLTSKWFGDA-EKLTKALFSFASKLAPVIIFVDEVDS 835 (1023)
Q Consensus 763 ~p~~gVLL~GPPGTGKT~LArAIA~el---g~~fi~vs~seL~s~~~ge~-e~~I~~lF~~A~k~~PsIIfIDEID~ 835 (1023)
....+++|+||||||||+||.|+++++ |.++..++.++++....... .......+... ....+|+|||+..
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l--~~~dlLilDDlG~ 119 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRL--KRVDLLILDDLGY 119 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHH--HTSSCEEEETCTS
T ss_pred ccCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCcc--ccccEecccccce
Confidence 345689999999999999999999877 88899999888876543211 01112222222 2458999999964
No 262
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=98.24 E-value=6.2e-05 Score=87.69 Aligned_cols=67 Identities=12% Similarity=0.316 Sum_probs=53.8
Q ss_pred hhhHHHHHHhhhccccCccchhhccccccCCCCceeeccCCChhHHHHHHHHHHHhhcCCcEEEeecCCCC
Q 001707 190 ENTKSLLVECVGSHLKHKKFTATFGARLTSSSGRILLRSVPGTELYRERLIRALARELQVPLLVLDSSVLA 260 (1023)
Q Consensus 190 e~tk~~L~~~~~~hl~~~~~~~~~~~~l~~~~~~iLL~~~~gsE~y~e~L~kAlA~~~~a~ll~~ds~~l~ 260 (1023)
+..|..|..|++-|.++..+.......+ ..+.|||.|||| ..+.+|||+||+.++++++.+|.+.+.
T Consensus 21 e~AkkalavAl~~~~~r~~l~~~~~~e~--~~~~ILliGp~G--~GKT~LAr~LAk~l~~~fi~vD~t~f~ 87 (443)
T PRK05201 21 DDAKRAVAIALRNRWRRMQLPEELRDEV--TPKNILMIGPTG--VGKTEIARRLAKLANAPFIKVEATKFT 87 (443)
T ss_pred HHHHHHHHHHHHHHHHHhcCCccccccc--CCceEEEECCCC--CCHHHHHHHHHHHhCChheeecchhhc
Confidence 8999999999999987765421111112 247899999999 999999999999999999999997444
No 263
>PRK06526 transposase; Provisional
Probab=98.23 E-value=1.8e-06 Score=94.91 Aligned_cols=73 Identities=26% Similarity=0.341 Sum_probs=48.8
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccchhhhhhH-HHHHHHHHHHHhhcCCeEEEeccchhh
Q 001707 762 LRPCKGILLFGPPGTGKTLLAKALATEA---GANFISITGSTLTSKWFGDA-EKLTKALFSFASKLAPVIIFVDEVDSL 836 (1023)
Q Consensus 762 i~p~~gVLL~GPPGTGKT~LArAIA~el---g~~fi~vs~seL~s~~~ge~-e~~I~~lF~~A~k~~PsIIfIDEID~L 836 (1023)
+....+|+|+||||||||+||.+|+.++ |..+..+++.+++....... ...+...+.. -..+.+|+|||++.+
T Consensus 95 i~~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~--l~~~dlLIIDD~g~~ 171 (254)
T PRK06526 95 VTGKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVK--LGRYPLLIVDEVGYI 171 (254)
T ss_pred hhcCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHH--hccCCEEEEcccccC
Confidence 3445689999999999999999999876 77777777766654432110 1111122221 234689999999876
No 264
>PF13173 AAA_14: AAA domain
Probab=98.21 E-value=3.2e-06 Score=82.87 Aligned_cols=69 Identities=33% Similarity=0.406 Sum_probs=48.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC--CcEEEEeccccchhhhhhHHHHHHHHHHHHhhcCCeEEEeccchhh
Q 001707 766 KGILLFGPPGTGKTLLAKALATEAG--ANFISITGSTLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSL 836 (1023)
Q Consensus 766 ~gVLL~GPPGTGKT~LArAIA~elg--~~fi~vs~seL~s~~~ge~e~~I~~lF~~A~k~~PsIIfIDEID~L 836 (1023)
+.++|+||+|+|||++++.++..+. -+++.+++.+.......... +...+.......+.+||||||+.+
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~iDEiq~~ 73 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPD--LLEYFLELIKPGKKYIFIDEIQYL 73 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhh--hHHHHHHhhccCCcEEEEehhhhh
Confidence 4589999999999999999999886 77888887765432211111 223333222226789999999987
No 265
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=98.19 E-value=2.1e-05 Score=96.32 Aligned_cols=48 Identities=27% Similarity=0.430 Sum_probs=41.2
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC
Q 001707 727 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAG 790 (1023)
Q Consensus 727 vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~elg 790 (1023)
..|+++.|.+.++..|...+.. .++++|+||||||||++|++++..+.
T Consensus 28 ~~~~~vigq~~a~~~L~~~~~~----------------~~~~l~~G~~G~GKttla~~l~~~l~ 75 (637)
T PRK13765 28 RLIDQVIGQEHAVEVIKKAAKQ----------------RRHVMMIGSPGTGKSMLAKAMAELLP 75 (637)
T ss_pred ccHHHcCChHHHHHHHHHHHHh----------------CCeEEEECCCCCcHHHHHHHHHHHcC
Confidence 5799999999999999877632 13699999999999999999998774
No 266
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.17 E-value=2.8e-06 Score=84.35 Aligned_cols=58 Identities=36% Similarity=0.589 Sum_probs=42.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC---CcEEEEeccccchhhhhhHHHHHHHHHHHHhhcCCeEEEeccchhhh
Q 001707 766 KGILLFGPPGTGKTLLAKALATEAG---ANFISITGSTLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLL 837 (1023)
Q Consensus 766 ~gVLL~GPPGTGKT~LArAIA~elg---~~fi~vs~seL~s~~~ge~e~~I~~lF~~A~k~~PsIIfIDEID~L~ 837 (1023)
..|||+|++||||+++|++|....+ .+|+.+++..+. ..++..+ ....|||+|||.|.
T Consensus 22 ~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~-----------~~~l~~a---~~gtL~l~~i~~L~ 82 (138)
T PF14532_consen 22 SPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP-----------AELLEQA---KGGTLYLKNIDRLS 82 (138)
T ss_dssp S-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC-----------HHHHHHC---TTSEEEEECGCCS-
T ss_pred CcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc-----------HHHHHHc---CCCEEEECChHHCC
Confidence 4699999999999999999998875 366666665533 2234433 67899999999984
No 267
>PRK09183 transposase/IS protein; Provisional
Probab=98.16 E-value=3.7e-06 Score=92.62 Aligned_cols=72 Identities=32% Similarity=0.418 Sum_probs=50.1
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccchhhhhh-HHHHHHHHHHHHhhcCCeEEEeccchhh
Q 001707 764 PCKGILLFGPPGTGKTLLAKALATEA---GANFISITGSTLTSKWFGD-AEKLTKALFSFASKLAPVIIFVDEVDSL 836 (1023)
Q Consensus 764 p~~gVLL~GPPGTGKT~LArAIA~el---g~~fi~vs~seL~s~~~ge-~e~~I~~lF~~A~k~~PsIIfIDEID~L 836 (1023)
...+++|+||||||||+||.+++..+ |..+..+++.++...+... ....+..+|... ...+.+++|||++.+
T Consensus 101 ~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~-~~~~dlLiiDdlg~~ 176 (259)
T PRK09183 101 RNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRG-VMAPRLLIIDEIGYL 176 (259)
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHH-hcCCCEEEEcccccC
Confidence 34579999999999999999998764 7788888877766443221 111233444433 245789999999875
No 268
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.15 E-value=5.1e-06 Score=99.18 Aligned_cols=145 Identities=21% Similarity=0.303 Sum_probs=84.8
Q ss_pred ccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC----cEEEEe------
Q 001707 728 RFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGA----NFISIT------ 797 (1023)
Q Consensus 728 tfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~elg~----~fi~vs------ 797 (1023)
.|.++.|...++..+.-. .....+++|+||||+|||+|++.++..+.- ..+.+.
T Consensus 189 d~~~v~Gq~~~~~al~la----------------a~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~ 252 (506)
T PRK09862 189 DLSDVIGQEQGKRGLEIT----------------AAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLV 252 (506)
T ss_pred CeEEEECcHHHHhhhhee----------------ccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhh
Confidence 677888887766665321 123468999999999999999999875521 111110
Q ss_pred cc-----ccc-------------hhhhhhHHHHHHHHHHHHhhcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhh
Q 001707 798 GS-----TLT-------------SKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSA 859 (1023)
Q Consensus 798 ~s-----eL~-------------s~~~ge~e~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~ 859 (1023)
.. .+. ...+|.....-...+..| ...+|||||++.+- ..++..|+..
T Consensus 253 g~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~pG~l~~A---~gGvLfLDEi~e~~------------~~~~~~L~~~ 317 (506)
T PRK09862 253 NAESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEISLA---HNGVLFLDELPEFE------------RRTLDALREP 317 (506)
T ss_pred ccccccCCcCCCCccCCCccchHHHHhCCCceehhhHhhhc---cCCEEecCCchhCC------------HHHHHHHHHH
Confidence 00 000 001111100111223333 34799999998762 2233344444
Q ss_pred hcCc---------cCCCCceEEEEEecCCCC---------------------CCcHHHHhhcCCceeecCCCHH
Q 001707 860 WDGL---------RSKESQKILILGATNRPF---------------------DLDDAVIRRLPRRIYVDLPDAE 903 (1023)
Q Consensus 860 Ldgl---------~~~~~~~VlVIaTTN~p~---------------------~Ld~aLlrRFd~~I~V~lPd~e 903 (1023)
|+.- ......++.+|+|+|... .+..++++||+..+.++.|+.+
T Consensus 318 LE~g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLDRfdL~v~v~~~~~~ 391 (506)
T PRK09862 318 IESGQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPG 391 (506)
T ss_pred HHcCcEEEecCCcceeccCCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHhhccEEEEeCCCCHH
Confidence 4211 111234689999998752 3777999999999999988654
No 269
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.14 E-value=1.4e-05 Score=77.34 Aligned_cols=97 Identities=23% Similarity=0.426 Sum_probs=59.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh--------CCcEEEEeccccch--hhh--------------hhHHHHHHHHHHHHh
Q 001707 766 KGILLFGPPGTGKTLLAKALATEA--------GANFISITGSTLTS--KWF--------------GDAEKLTKALFSFAS 821 (1023)
Q Consensus 766 ~gVLL~GPPGTGKT~LArAIA~el--------g~~fi~vs~seL~s--~~~--------------ge~e~~I~~lF~~A~ 821 (1023)
..++|+||||+|||++++.++... ..+++.++++...+ .+. .........+.....
T Consensus 5 ~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l~ 84 (131)
T PF13401_consen 5 RILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDALD 84 (131)
T ss_dssp --EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHHH
T ss_pred cccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHHH
Confidence 469999999999999999999987 67888887654431 000 112333344444444
Q ss_pred hcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhcCccCCCCceEEEEEec
Q 001707 822 KLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGAT 877 (1023)
Q Consensus 822 k~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~~~~~VlVIaTT 877 (1023)
.....+|+|||+|.+. ...+++.+..+++ ..+-+++++|+.
T Consensus 85 ~~~~~~lviDe~~~l~-----------~~~~l~~l~~l~~----~~~~~vvl~G~~ 125 (131)
T PF13401_consen 85 RRRVVLLVIDEADHLF-----------SDEFLEFLRSLLN----ESNIKVVLVGTP 125 (131)
T ss_dssp HCTEEEEEEETTHHHH-----------THHHHHHHHHHTC----SCBEEEEEEESS
T ss_pred hcCCeEEEEeChHhcC-----------CHHHHHHHHHHHh----CCCCeEEEEECh
Confidence 4444699999999974 1334455544444 233456666654
No 270
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=98.13 E-value=0.00013 Score=84.99 Aligned_cols=68 Identities=13% Similarity=0.332 Sum_probs=54.5
Q ss_pred chhhHHHHHHhhhccccCccchhhccccccCCCCceeeccCCChhHHHHHHHHHHHhhcCCcEEEeecCCCC
Q 001707 189 NENTKSLLVECVGSHLKHKKFTATFGARLTSSSGRILLRSVPGTELYRERLIRALARELQVPLLVLDSSVLA 260 (1023)
Q Consensus 189 se~tk~~L~~~~~~hl~~~~~~~~~~~~l~~~~~~iLL~~~~gsE~y~e~L~kAlA~~~~a~ll~~ds~~l~ 260 (1023)
-++.|.+|.-|++.|.++..+...-.... ..++|||.|||| ..+.+|||+||+.++++++-+|.+.+.
T Consensus 17 Q~eAkk~lsvAl~n~~~r~~~~~~~~~e~--~p~~ILLiGppG--~GKT~lAraLA~~l~~~fi~vdat~~~ 84 (441)
T TIGR00390 17 QDNAKKSVAIALRNRYRRSQLNEELKDEV--TPKNILMIGPTG--VGKTEIARRLAKLANAPFIKVEATKFT 84 (441)
T ss_pred HHHHHHHHHHHHHhhhhhhcccccccccc--CCceEEEECCCC--CCHHHHHHHHHHHhCCeEEEeecceee
Confidence 38999999999999977765421111122 347899999999 999999999999999999999998554
No 271
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.11 E-value=4.8e-05 Score=83.94 Aligned_cols=91 Identities=20% Similarity=0.150 Sum_probs=64.2
Q ss_pred CCCCCcHHHHhhcCCceeecCCCHHHHHHHHHHHHhccccCCccC-HHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHHH
Q 001707 879 RPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLESGFQ-FNELANATEGYSGSDLKNLCIAAAYRPVQELLEE 957 (1023)
Q Consensus 879 ~p~~Ld~aLlrRFd~~I~V~lPd~eeR~~ILk~~L~~~~l~~dvd-l~~LA~~TeGySgaDL~~L~~~Aa~~Airr~l~~ 957 (1023)
.|+.++-.|++|. .+|...+.+.++..+||+..+..+.+.-+.+ +..|.......+-+---+|+..|.+.+++|.-
T Consensus 338 SphGiP~D~lDR~-lII~t~py~~~d~~~IL~iRc~EEdv~m~~~A~d~Lt~i~~~tsLRYai~Lit~a~~~~~krk~-- 414 (454)
T KOG2680|consen 338 SPHGIPIDLLDRM-LIISTQPYTEEDIKKILRIRCQEEDVEMNPDALDLLTKIGEATSLRYAIHLITAASLVCLKRKG-- 414 (454)
T ss_pred CCCCCcHHHhhhh-heeecccCcHHHHHHHHHhhhhhhccccCHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhcC--
Confidence 4677999999998 5677778899999999999998776653333 44444444455556666777778877777521
Q ss_pred HHHHHHhhCCCCCCCCcCCCCHHHHHHHHHhh
Q 001707 958 ERKLFIQRGKNDAAPVLRPLKLEDFIQSKAKV 989 (1023)
Q Consensus 958 e~~~~~~~~~~~~~~~~r~Lt~eDF~~Al~kv 989 (1023)
..+..+|+..+..-+
T Consensus 415 -----------------~~v~~~di~r~y~LF 429 (454)
T KOG2680|consen 415 -----------------KVVEVDDIERVYRLF 429 (454)
T ss_pred -----------------ceeehhHHHHHHHHH
Confidence 356778888877644
No 272
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=98.09 E-value=1.1e-05 Score=89.94 Aligned_cols=158 Identities=20% Similarity=0.197 Sum_probs=101.3
Q ss_pred CCcccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc--E----EEEec
Q 001707 725 IGVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGAN--F----ISITG 798 (1023)
Q Consensus 725 ~~vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~elg~~--f----i~vs~ 798 (1023)
....++|+++.+++...+.++... . + ..++|+|||||||||....+.|+.+-.+ + ..+++
T Consensus 36 rP~~l~dv~~~~ei~st~~~~~~~----------~---~-lPh~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~lelna 101 (360)
T KOG0990|consen 36 RPPFLGIVIKQEPIWSTENRYSGM----------P---G-LPHLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLELNA 101 (360)
T ss_pred CCchhhhHhcCCchhhHHHHhccC----------C---C-CCcccccCCCCCCCCCchhhhhhhhcCCCCchhHHHHhhc
Confidence 345678888888888888876421 1 1 2389999999999999999999988553 1 11222
Q ss_pred cccchhhhh-hHHHHHHHHHHHHhh-------cCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhcCccCCCCce
Q 001707 799 STLTSKWFG-DAEKLTKALFSFASK-------LAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQK 870 (1023)
Q Consensus 799 seL~s~~~g-e~e~~I~~lF~~A~k-------~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~~~~~ 870 (1023)
++ -.| .....-...|..++. ..+..|++||.|.+....+ .+.++++..+ ..+
T Consensus 102 Sd----~rgid~vr~qi~~fast~~~~~fst~~~fKlvILDEADaMT~~AQ-----nALRRviek~-----------t~n 161 (360)
T KOG0990|consen 102 SD----DRGIDPVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAMTRDAQ-----NALRRVIEKY-----------TAN 161 (360)
T ss_pred cC----ccCCcchHHHHHHHHhhccceeccccCceeEEEecchhHhhHHHH-----HHHHHHHHHh-----------ccc
Confidence 21 111 122233344555442 2578999999999853322 2233333222 234
Q ss_pred EEEEEecCCCCCCcHHHHhhcCCceeecCCCHHHHHHHHHHHHhccc
Q 001707 871 ILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHES 917 (1023)
Q Consensus 871 VlVIaTTN~p~~Ld~aLlrRFd~~I~V~lPd~eeR~~ILk~~L~~~~ 917 (1023)
+.++..+|.+..+.+++.+||. .+.+.+-+...-...+.+++..+.
T Consensus 162 ~rF~ii~n~~~ki~pa~qsRct-rfrf~pl~~~~~~~r~shi~e~e~ 207 (360)
T KOG0990|consen 162 TRFATISNPPQKIHPAQQSRCT-RFRFAPLTMAQQTERQSHIRESEQ 207 (360)
T ss_pred eEEEEeccChhhcCchhhcccc-cCCCCCCChhhhhhHHHHHHhcch
Confidence 5566778999999999999985 456666666666666666665443
No 273
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=98.08 E-value=2.6e-05 Score=91.83 Aligned_cols=167 Identities=22% Similarity=0.324 Sum_probs=96.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccchhhhhhHHHHHHHHHHH---------------HhhcCCeE
Q 001707 766 KGILLFGPPGTGKTLLAKALATEA---GANFISITGSTLTSKWFGDAEKLTKALFSF---------------ASKLAPVI 827 (1023)
Q Consensus 766 ~gVLL~GPPGTGKT~LArAIA~el---g~~fi~vs~seL~s~~~ge~e~~I~~lF~~---------------A~k~~PsI 827 (1023)
..+++.|.+||||+++|+++.... +.+|+.++|..+...+.. ..+|.. ......+.
T Consensus 158 ~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~~------~~lfg~~~~~~~~~~~~~~g~~~~a~~gt 231 (463)
T TIGR01818 158 ITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLIE------SELFGHEKGAFTGANTRRQGRFEQADGGT 231 (463)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHH------HHhcCCCCCCCCCcccCCCCcEEECCCCe
Confidence 469999999999999999998875 569999999887433221 111221 11224688
Q ss_pred EEeccchhhhhccCCCchhHHHHHHHHHHHhhhcCcc-------CCCCceEEEEEecCCC-------CCCcHHHHhhcCC
Q 001707 828 IFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLR-------SKESQKILILGATNRP-------FDLDDAVIRRLPR 893 (1023)
Q Consensus 828 IfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~-------~~~~~~VlVIaTTN~p-------~~Ld~aLlrRFd~ 893 (1023)
||||||+.|.. ... ..|+..++.-. ......+.||+||+.. ..+.+.+..|+.
T Consensus 232 l~l~ei~~l~~--------~~q----~~ll~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~f~~~L~~rl~- 298 (463)
T TIGR01818 232 LFLDEIGDMPL--------DAQ----TRLLRVLADGEFYRVGGRTPIKVDVRIVAATHQNLEALVRQGKFREDLFHRLN- 298 (463)
T ss_pred EEEEchhhCCH--------HHH----HHHHHHHhcCcEEECCCCceeeeeeEEEEeCCCCHHHHHHcCCcHHHHHHHhC-
Confidence 99999999842 222 23333332110 0111246688888654 235567777774
Q ss_pred ceeecCCCHHH----HHHHHHHHHhcccc----C-CccCHHHHHHHcc-CC--cHHHHHHHHHHHHHHHH
Q 001707 894 RIYVDLPDAEN----RMKILRIFLAHESL----E-SGFQFNELANATE-GY--SGSDLKNLCIAAAYRPV 951 (1023)
Q Consensus 894 ~I~V~lPd~ee----R~~ILk~~L~~~~l----~-~dvdl~~LA~~Te-Gy--SgaDL~~L~~~Aa~~Ai 951 (1023)
.+.+..|...+ ...++..++..... . ..++-+.+..... +| +.++|++++..|+..+-
T Consensus 299 ~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNvreL~~~~~~~~~~~~ 368 (463)
T TIGR01818 299 VIRIHLPPLRERREDIPRLARHFLALAARELDVEPKLLDPEALERLKQLRWPGNVRQLENLCRWLTVMAS 368 (463)
T ss_pred cceecCCCcccchhhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHhCC
Confidence 34555555444 44455555443211 1 1233333333222 23 45999999988887553
No 274
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.08 E-value=1.9e-05 Score=98.63 Aligned_cols=127 Identities=22% Similarity=0.308 Sum_probs=90.1
Q ss_pred cccChHHHHHHHHHHHHcccCCchhhccCCCCC--CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccch--
Q 001707 731 DIGALEDVKKALNELVILPMRRPDLFSRGNLLR--PCKGILLFGPPGTGKTLLAKALATEA---GANFISITGSTLTS-- 803 (1023)
Q Consensus 731 DIgGle~vk~~L~e~V~~pL~~pelf~~~gli~--p~~gVLL~GPPGTGKT~LArAIA~el---g~~fi~vs~seL~s-- 803 (1023)
.|+|++++...+-++|... +.|+.. |...+||.||.|+|||-||+|+|..+ .-.|+.++++++..
T Consensus 563 ~V~gQ~eAv~aIa~AI~~s--------r~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~evs 634 (898)
T KOG1051|consen 563 RVIGQDEAVAAIAAAIRRS--------RAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEVS 634 (898)
T ss_pred hccchHHHHHHHHHHHHhh--------hcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhhhh
Confidence 5788999999999988653 223233 66789999999999999999999988 45789999986322
Q ss_pred -------hhhhhHHHHHHHHHHHHhhcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhcCccCC-------CCc
Q 001707 804 -------KWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSK-------ESQ 869 (1023)
Q Consensus 804 -------~~~ge~e~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~-------~~~ 869 (1023)
.|.|. .....+....++.+-+||+|||||.- ...+++.|+..+|...-. .-.
T Consensus 635 kligsp~gyvG~--e~gg~LteavrrrP~sVVLfdeIEkA------------h~~v~n~llq~lD~GrltDs~Gr~Vd~k 700 (898)
T KOG1051|consen 635 KLIGSPPGYVGK--EEGGQLTEAVKRRPYSVVLFEEIEKA------------HPDVLNILLQLLDRGRLTDSHGREVDFK 700 (898)
T ss_pred hccCCCcccccc--hhHHHHHHHHhcCCceEEEEechhhc------------CHHHHHHHHHHHhcCccccCCCcEeecc
Confidence 13332 22346666677778899999999973 234456666666643322 224
Q ss_pred eEEEEEecCC
Q 001707 870 KILILGATNR 879 (1023)
Q Consensus 870 ~VlVIaTTN~ 879 (1023)
+++||+|+|.
T Consensus 701 N~I~IMTsn~ 710 (898)
T KOG1051|consen 701 NAIFIMTSNV 710 (898)
T ss_pred ceEEEEeccc
Confidence 6899999874
No 275
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=98.06 E-value=4.1e-05 Score=89.51 Aligned_cols=83 Identities=27% Similarity=0.352 Sum_probs=61.5
Q ss_pred HHHHHHHhhcccCCCcccccccccccccchhhHHHHHHhhhccccCccch-hhc-cccccCCCCceeeccCCChhHHHHH
Q 001707 161 ERFKNEFSRRIVPWEKINISWDTFPYYINENTKSLLVECVGSHLKHKKFT-ATF-GARLTSSSGRILLRSVPGTELYRER 238 (1023)
Q Consensus 161 ~~~~~~~~~~v~~~~~~~vsf~~fpyylse~tk~~L~~~~~~hl~~~~~~-~~~-~~~l~~~~~~iLL~~~~gsE~y~e~ 238 (1023)
..+++.|...||-- |+.|..|.-|+|-|.++-... ... ..+..-....|||.|||| ..++.
T Consensus 69 ~~i~~~L~~~ViGQ---------------e~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~G--sGKT~ 131 (413)
T TIGR00382 69 KEIKAHLDEYVIGQ---------------EQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTG--SGKTL 131 (413)
T ss_pred HHHHHHhcceecCH---------------HHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCC--cCHHH
Confidence 34677776666554 899999999999998874320 000 011223457899999999 89999
Q ss_pred HHHHHHhhcCCcEEEeecCCCC
Q 001707 239 LIRALARELQVPLLVLDSSVLA 260 (1023)
Q Consensus 239 L~kAlA~~~~a~ll~~ds~~l~ 260 (1023)
|||+||+.+++++.++|.+.|.
T Consensus 132 lAraLA~~l~~pf~~~da~~L~ 153 (413)
T TIGR00382 132 LAQTLARILNVPFAIADATTLT 153 (413)
T ss_pred HHHHHHHhcCCCeEEechhhcc
Confidence 9999999999999998886543
No 276
>PRK15115 response regulator GlrR; Provisional
Probab=98.06 E-value=5.6e-05 Score=88.73 Aligned_cols=166 Identities=20% Similarity=0.309 Sum_probs=96.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccchhhhhhHHHHHHHHHHHH---------------hhcCCeE
Q 001707 766 KGILLFGPPGTGKTLLAKALATEA---GANFISITGSTLTSKWFGDAEKLTKALFSFA---------------SKLAPVI 827 (1023)
Q Consensus 766 ~gVLL~GPPGTGKT~LArAIA~el---g~~fi~vs~seL~s~~~ge~e~~I~~lF~~A---------------~k~~PsI 827 (1023)
..|+|+|++|||||++|+++.... +.+|+.++|..+..... -..+|..+ ......+
T Consensus 158 ~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~~------~~~lfg~~~~~~~~~~~~~~g~~~~a~~gt 231 (444)
T PRK15115 158 VSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLL------ESELFGHARGAFTGAVSNREGLFQAAEGGT 231 (444)
T ss_pred CeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHHH------HHHhcCCCcCCCCCCccCCCCcEEECCCCE
Confidence 469999999999999999998876 57999999988743221 11233221 1223579
Q ss_pred EEeccchhhhhccCCCchhHHHHHHHHHHHhhhcCcc-------CCCCceEEEEEecCCC-------CCCcHHHHhhcCC
Q 001707 828 IFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLR-------SKESQKILILGATNRP-------FDLDDAVIRRLPR 893 (1023)
Q Consensus 828 IfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~-------~~~~~~VlVIaTTN~p-------~~Ld~aLlrRFd~ 893 (1023)
|||||||.|... . ...|+..++.-. ......+.+|+||+.. ..+.+.+..|+.
T Consensus 232 l~l~~i~~l~~~--------~----q~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~~~l~~~~~~~~f~~~l~~~l~- 298 (444)
T PRK15115 232 LFLDEIGDMPAP--------L----QVKLLRVLQERKVRPLGSNRDIDIDVRIISATHRDLPKAMARGEFREDLYYRLN- 298 (444)
T ss_pred EEEEccccCCHH--------H----HHHHHHHHhhCCEEeCCCCceeeeeEEEEEeCCCCHHHHHHcCCccHHHHHhhc-
Confidence 999999998422 1 223333332110 0112257888888753 123344444553
Q ss_pred ceeecCCCHHHHHH----HHHHHHhccc----cC-CccC---HHHHHHHccCCcHHHHHHHHHHHHHHH
Q 001707 894 RIYVDLPDAENRMK----ILRIFLAHES----LE-SGFQ---FNELANATEGYSGSDLKNLCIAAAYRP 950 (1023)
Q Consensus 894 ~I~V~lPd~eeR~~----ILk~~L~~~~----l~-~dvd---l~~LA~~TeGySgaDL~~L~~~Aa~~A 950 (1023)
.+.+..|...+|.+ +++.++.... .. ..++ +..|....=.-+.++|+++++.|+..+
T Consensus 299 ~~~i~lPpLr~R~eDi~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~WpgNvreL~~~i~~~~~~~ 367 (444)
T PRK15115 299 VVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVIEQCVALT 367 (444)
T ss_pred eeeecCCChHhccccHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHhC
Confidence 45677788877754 4445544321 11 1122 333443331236789999998877643
No 277
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.05 E-value=2.8e-05 Score=76.72 Aligned_cols=72 Identities=29% Similarity=0.390 Sum_probs=49.3
Q ss_pred EEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccchhh------------------------hhhHHHHHHHHHHHH
Q 001707 768 ILLFGPPGTGKTLLAKALATEA---GANFISITGSTLTSKW------------------------FGDAEKLTKALFSFA 820 (1023)
Q Consensus 768 VLL~GPPGTGKT~LArAIA~el---g~~fi~vs~seL~s~~------------------------~ge~e~~I~~lF~~A 820 (1023)
++|+||||+|||+++..++... +.+++.++........ ...........+..+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERLR 81 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHHH
Confidence 7899999999999999998887 5667666654332211 001122223345556
Q ss_pred hhcCCeEEEeccchhhhhc
Q 001707 821 SKLAPVIIFVDEVDSLLGA 839 (1023)
Q Consensus 821 ~k~~PsIIfIDEID~L~~~ 839 (1023)
....|.+|+|||+..+...
T Consensus 82 ~~~~~~~lviDe~~~~~~~ 100 (165)
T cd01120 82 ERGGDDLIILDELTRLVRA 100 (165)
T ss_pred hCCCCEEEEEEcHHHHHHH
Confidence 6778999999999998644
No 278
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.04 E-value=8.1e-05 Score=84.45 Aligned_cols=60 Identities=12% Similarity=0.036 Sum_probs=47.1
Q ss_pred hhhcccccCCCcchHHHHhccccEEEEcCCChHHHHHHHHHHHHHHhhhhhhhhhHHHHHH
Q 001707 563 RLTEGLKATKRSDDNEIYNLFTNVLSIHPPKEEDLLRTFNKQVEEDRRIVIYRSNLNELHK 623 (1023)
Q Consensus 563 ~LvIGmTNR~d~iDeaL~rrFe~~ieI~LPdee~Rl~Il~Iht~~~~~~~~~~~~v~~l~~ 623 (1023)
..+||+||+...++++|+.||...++|++|+.+.+.+|++.+... ......++-++.++.
T Consensus 151 ~~li~at~~~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~-~~~~~~~~~~~~ia~ 210 (328)
T PRK00080 151 FTLIGATTRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARI-LGVEIDEEGALEIAR 210 (328)
T ss_pred ceEEeecCCcccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHH-cCCCcCHHHHHHHHH
Confidence 357999999999999999999999999999999999999987554 233333334555554
No 279
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.03 E-value=2.9e-06 Score=94.06 Aligned_cols=140 Identities=19% Similarity=0.306 Sum_probs=78.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhC-Cc--EEEEeccccchhhhhhHHHHHHHHHHHH----h-------hcCCeEEEe
Q 001707 765 CKGILLFGPPGTGKTLLAKALATEAG-AN--FISITGSTLTSKWFGDAEKLTKALFSFA----S-------KLAPVIIFV 830 (1023)
Q Consensus 765 ~~gVLL~GPPGTGKT~LArAIA~elg-~~--fi~vs~seL~s~~~ge~e~~I~~lF~~A----~-------k~~PsIIfI 830 (1023)
.++|||+||+|||||++++..-..+. .. ...++++... ....+..+.+.. + ..+..|+||
T Consensus 33 ~~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~T------ts~~~q~~ie~~l~k~~~~~~gP~~~k~lv~fi 106 (272)
T PF12775_consen 33 GRPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQT------TSNQLQKIIESKLEKRRGRVYGPPGGKKLVLFI 106 (272)
T ss_dssp TEEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTH------HHHHHHHCCCTTECECTTEEEEEESSSEEEEEE
T ss_pred CCcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCCC------CHHHHHHHHhhcEEcCCCCCCCCCCCcEEEEEe
Confidence 36799999999999999999877653 22 2334443221 112222221111 0 112469999
Q ss_pred ccchhhhhccCCCchhHHHHHHHHHHHhhhcCccCC------CCceEEEEEecCCCC---CCcHHHHhhcCCceeecCCC
Q 001707 831 DEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSK------ESQKILILGATNRPF---DLDDAVIRRLPRRIYVDLPD 901 (1023)
Q Consensus 831 DEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~------~~~~VlVIaTTN~p~---~Ld~aLlrRFd~~I~V~lPd 901 (1023)
||+..-.....+.. ....++.+++.. .|.... .-..+.+||++++.. .+++.++|.| .++.++.|+
T Consensus 107 DDlN~p~~d~ygtq---~~iElLRQ~i~~-~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~r~f-~i~~~~~p~ 181 (272)
T PF12775_consen 107 DDLNMPQPDKYGTQ---PPIELLRQLIDY-GGFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFLRHF-NILNIPYPS 181 (272)
T ss_dssp ETTT-S---TTS-----HHHHHHHHHHHC-SEEECTTTTEEEEECSEEEEEEESSTTT--SHHHHHHTTE-EEEE----T
T ss_pred cccCCCCCCCCCCc---CHHHHHHHHHHh-cCcccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHhhhe-EEEEecCCC
Confidence 99998765554432 122344444422 122211 113578889887643 3788999988 588899999
Q ss_pred HHHHHHHHHHHHhc
Q 001707 902 AENRMKILRIFLAH 915 (1023)
Q Consensus 902 ~eeR~~ILk~~L~~ 915 (1023)
.+....|+..++..
T Consensus 182 ~~sl~~If~~il~~ 195 (272)
T PF12775_consen 182 DESLNTIFSSILQS 195 (272)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhh
Confidence 99999999988764
No 280
>PF05729 NACHT: NACHT domain
Probab=98.00 E-value=2.9e-05 Score=77.31 Aligned_cols=140 Identities=16% Similarity=0.248 Sum_probs=72.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhC--------Cc-EEEEeccccchh--------h----hhhHHHHHHH-HHHHHhhcC
Q 001707 767 GILLFGPPGTGKTLLAKALATEAG--------AN-FISITGSTLTSK--------W----FGDAEKLTKA-LFSFASKLA 824 (1023)
Q Consensus 767 gVLL~GPPGTGKT~LArAIA~elg--------~~-fi~vs~seL~s~--------~----~ge~e~~I~~-lF~~A~k~~ 824 (1023)
-++|+|+||+|||++++.++..+. .. ++.+.+...... . .......+.. ....+....
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKNK 81 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcCC
Confidence 489999999999999999998771 11 223333222111 0 0011111111 122234556
Q ss_pred CeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhcCccCCCCceEEEEEecCCCCCCcHHHHhhcC--CceeecCCCH
Q 001707 825 PVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPFDLDDAVIRRLP--RRIYVDLPDA 902 (1023)
Q Consensus 825 PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd--~~I~V~lPd~ 902 (1023)
..+|+||.+|.+...... .........+..++... ...+ +-+|.|++ +..... +.+.+. ..+.+...+.
T Consensus 82 ~~llilDglDE~~~~~~~----~~~~~~~~~l~~l~~~~-~~~~--~~liit~r-~~~~~~-~~~~~~~~~~~~l~~~~~ 152 (166)
T PF05729_consen 82 RVLLILDGLDELEEQDQS----QERQRLLDLLSQLLPQA-LPPG--VKLIITSR-PRAFPD-LRRRLKQAQILELEPFSE 152 (166)
T ss_pred ceEEEEechHhcccchhh----hHHHHHHHHHHHHhhhc-cCCC--CeEEEEEc-CChHHH-HHHhcCCCcEEEECCCCH
Confidence 789999999999643321 01111222222222221 1122 33333443 222222 334333 3478888899
Q ss_pred HHHHHHHHHHHhc
Q 001707 903 ENRMKILRIFLAH 915 (1023)
Q Consensus 903 eeR~~ILk~~L~~ 915 (1023)
+++.++++.+++.
T Consensus 153 ~~~~~~~~~~f~~ 165 (166)
T PF05729_consen 153 EDIKQYLRKYFSN 165 (166)
T ss_pred HHHHHHHHHHhhc
Confidence 9999999988753
No 281
>PRK06921 hypothetical protein; Provisional
Probab=97.99 E-value=1.9e-05 Score=87.34 Aligned_cols=68 Identities=26% Similarity=0.301 Sum_probs=45.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEeccccchhhhhhHHHHHHHHHHHHhhcCCeEEEeccchh
Q 001707 765 CKGILLFGPPGTGKTLLAKALATEA----GANFISITGSTLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDS 835 (1023)
Q Consensus 765 ~~gVLL~GPPGTGKT~LArAIA~el----g~~fi~vs~seL~s~~~ge~e~~I~~lF~~A~k~~PsIIfIDEID~ 835 (1023)
..+++|+||||+|||+|+.|||+++ +..++.++..+++....... ......+.. -....+|+|||++.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~~-~~~~~~~~~--~~~~dlLiIDDl~~ 188 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDDF-DLLEAKLNR--MKKVEVLFIDDLFK 188 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHHH-HHHHHHHHH--hcCCCEEEEecccc
Confidence 3579999999999999999999986 56778887766544321111 111111111 23468999999954
No 282
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=97.97 E-value=0.0001 Score=82.24 Aligned_cols=60 Identities=12% Similarity=0.060 Sum_probs=46.6
Q ss_pred hhhcccccCCCcchHHHHhccccEEEEcCCChHHHHHHHHHHHHHHhhhhhhhhhHHHHHH
Q 001707 563 RLTEGLKATKRSDDNEIYNLFTNVLSIHPPKEEDLLRTFNKQVEEDRRIVIYRSNLNELHK 623 (1023)
Q Consensus 563 ~LvIGmTNR~d~iDeaL~rrFe~~ieI~LPdee~Rl~Il~Iht~~~~~~~~~~~~v~~l~~ 623 (1023)
..+||+||++..++++|+.||...+.|.+|+.+...+|++..... .......+-++.++.
T Consensus 130 ~~li~~t~~~~~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~-~~~~~~~~al~~ia~ 189 (305)
T TIGR00635 130 FTLVGATTRAGMLTSPLRDRFGIILRLEFYTVEELAEIVSRSAGL-LNVEIEPEAALEIAR 189 (305)
T ss_pred eEEEEecCCccccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHH-hCCCcCHHHHHHHHH
Confidence 468899999999999999999999999999999999999877543 222333333555554
No 283
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=97.91 E-value=7.9e-05 Score=91.29 Aligned_cols=171 Identities=26% Similarity=0.287 Sum_probs=95.8
Q ss_pred cccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEE-Eecccc--------
Q 001707 731 DIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFIS-ITGSTL-------- 801 (1023)
Q Consensus 731 DIgGle~vk~~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~elg~~fi~-vs~seL-------- 801 (1023)
.|-|.+.+|+.+.-.+.-. -......+..++.--+|||.|.||||||.|.+.+++-+-..++. -.++.-
T Consensus 287 sIyG~e~VKkAilLqLfgG--v~k~~~~g~~iRGDInILLvGDPgtaKSqlLk~v~~~aPr~vytsgkgss~~GLTAav~ 364 (682)
T COG1241 287 SIYGHEDVKKAILLQLFGG--VKKNLPDGTRIRGDIHILLVGDPGTAKSQLLKYVAKLAPRGVYTSGKGSSAAGLTAAVV 364 (682)
T ss_pred cccCcHHHHHHHHHHhcCC--CcccCCCCcccccceeEEEcCCCchhHHHHHHHHHhhCCceEEEccccccccCceeEEE
Confidence 4678999999886555322 22222223334455689999999999999999999887443322 111111
Q ss_pred ----chhhhhhHHHHHHHHHHHHhhcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhh-cCccCCCCceEEEEEe
Q 001707 802 ----TSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAW-DGLRSKESQKILILGA 876 (1023)
Q Consensus 802 ----~s~~~ge~e~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~L-dgl~~~~~~~VlVIaT 876 (1023)
.+.|.-+... .-...++|.+|||+|.+-..... .....+-++.+..- -|+...-+.+.-|+||
T Consensus 365 rd~~tge~~LeaGA--------LVlAD~Gv~cIDEfdKm~~~dr~----aihEaMEQQtIsIaKAGI~atLnARcsvLAA 432 (682)
T COG1241 365 RDKVTGEWVLEAGA--------LVLADGGVCCIDEFDKMNEEDRV----AIHEAMEQQTISIAKAGITATLNARCSVLAA 432 (682)
T ss_pred EccCCCeEEEeCCE--------EEEecCCEEEEEeccCCChHHHH----HHHHHHHhcEeeecccceeeecchhhhhhhh
Confidence 1111111100 01235689999999987322110 11111111111111 1222223456678999
Q ss_pred cCCCCC-------------CcHHHHhhcCCceee-cCCCHHHHHHHHHHHHhc
Q 001707 877 TNRPFD-------------LDDAVIRRLPRRIYV-DLPDAENRMKILRIFLAH 915 (1023)
Q Consensus 877 TN~p~~-------------Ld~aLlrRFd~~I~V-~lPd~eeR~~ILk~~L~~ 915 (1023)
+|+... |++.|++|||..+.+ ..|+.+.-..+..+.+..
T Consensus 433 aNP~~Gryd~~~~~~enI~l~~~lLSRFDLifvl~D~~d~~~D~~ia~hil~~ 485 (682)
T COG1241 433 ANPKFGRYDPKKTVAENINLPAPLLSRFDLIFVLKDDPDEEKDEEIAEHILDK 485 (682)
T ss_pred hCCCCCcCCCCCCHHHhcCCChhHHhhCCeeEEecCCCCccchHHHHHHHHHH
Confidence 997763 788999999976665 357776555555555443
No 284
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=97.89 E-value=0.00022 Score=77.47 Aligned_cols=128 Identities=22% Similarity=0.217 Sum_probs=73.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccchhhhhhHHHHHHHHHHHHhhcCCeEEEeccchhhhhccCCCch
Q 001707 766 KGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFE 845 (1023)
Q Consensus 766 ~gVLL~GPPGTGKT~LArAIA~elg~~fi~vs~seL~s~~~ge~e~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~ 845 (1023)
.+-.++||+|||||.+++++|+.+|.+++.++|++.+. ...+.++|.-+.. ..+-+++||+++|-
T Consensus 33 ~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~------~~~l~ril~G~~~-~GaW~cfdefnrl~-------- 97 (231)
T PF12774_consen 33 LGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMD------YQSLSRILKGLAQ-SGAWLCFDEFNRLS-------- 97 (231)
T ss_dssp TEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-------HHHHHHHHHHHHH-HT-EEEEETCCCSS--------
T ss_pred CCCCCcCCCCCCchhHHHHHHHHhCCeEEEeccccccc------HHHHHHHHHHHhh-cCchhhhhhhhhhh--------
Confidence 46778999999999999999999999999999988654 3455666654443 35889999999983
Q ss_pred hHHHHHHHHH---HHhhhcCccC---------CCCceEEEEEecCCC----CCCcHHHHhhcCCceeecCCCHHHHHHHH
Q 001707 846 HEATRRMRNE---FMSAWDGLRS---------KESQKILILGATNRP----FDLDDAVIRRLPRRIYVDLPDAENRMKIL 909 (1023)
Q Consensus 846 ~e~~~ril~~---LL~~Ldgl~~---------~~~~~VlVIaTTN~p----~~Ld~aLlrRFd~~I~V~lPd~eeR~~IL 909 (1023)
.+....+.+. +...+..-.. .-+...-++.|.|.. ..|++.++.-| +.+.+..||.....+++
T Consensus 98 ~~vLS~i~~~i~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np~y~gr~~LP~nLk~lF-Rpvam~~PD~~~I~ei~ 176 (231)
T PF12774_consen 98 EEVLSVISQQIQSIQDALRAKQKSFTLEGQEIKLNPNCGIFITMNPGYAGRSELPENLKALF-RPVAMMVPDLSLIAEIL 176 (231)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTSSEEEETTCEEE--TT-EEEEEE-B-CCCC--S-HHHCTTE-EEEE--S--HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcccccccccCCCEEEEccceeEEEeeccccCCcccCCHhHHHHh-heeEEeCCCHHHHHHHH
Confidence 2333222222 2222221100 011123345566633 45888888777 77888889877665554
No 285
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=97.84 E-value=0.00011 Score=88.21 Aligned_cols=177 Identities=21% Similarity=0.217 Sum_probs=95.0
Q ss_pred cccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEE-eccccchh--hh-
Q 001707 731 DIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISI-TGSTLTSK--WF- 806 (1023)
Q Consensus 731 DIgGle~vk~~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~elg~~fi~v-s~seL~s~--~~- 806 (1023)
.|.|++++|.-|.-.+.- ..-..|.++|-.+.--+|||+|.||||||.|.+.+++-+..-.+.- ..+.-.+- |+
T Consensus 430 sIye~edvKkglLLqLfG--Gt~k~~~~~~~~R~~INILL~GDPGtsKSqlLqyv~~l~pRg~yTSGkGsSavGLTayVt 507 (804)
T KOG0478|consen 430 SIYELEDVKKGLLLQLFG--GTRKEDEKSGRFRGDINILLVGDPGTSKSQLLQYCHRLLPRGVYTSGKGSSAVGLTAYVT 507 (804)
T ss_pred hhhcccchhhhHHHHHhc--CCcccccccccccccceEEEecCCCcCHHHHHHHHHHhCCcceeecCCccchhcceeeEE
Confidence 456789999888554422 2223344554455557899999999999999999998773322110 00000000 00
Q ss_pred --hhHHHHHHHHHHHHhhcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhcCccCCCCceEEEEEecCCCCC--
Q 001707 807 --GDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPFD-- 882 (1023)
Q Consensus 807 --ge~e~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~~~~~VlVIaTTN~p~~-- 882 (1023)
+++.+.+-+--. .--....|-.|||+|.|.....+. -++++.+ +++-...-|+...-+.+.-|||++|+...
T Consensus 508 rd~dtkqlVLesGA-LVLSD~GiCCIDEFDKM~dStrSv-LhEvMEQ--QTvSIAKAGII~sLNAR~SVLAaANP~~sky 583 (804)
T KOG0478|consen 508 KDPDTRQLVLESGA-LVLSDNGICCIDEFDKMSDSTRSV-LHEVMEQ--QTLSIAKAGIIASLNARCSVLAAANPIRSKY 583 (804)
T ss_pred ecCccceeeeecCc-EEEcCCceEEchhhhhhhHHHHHH-HHHHHHH--hhhhHhhcceeeeccccceeeeeeccccccC
Confidence 000000000000 011245789999999994322111 1222111 11112222443334557779999985422
Q ss_pred -----------CcHHHHhhcCCcee-ecCCCHHHHHHHHHHHH
Q 001707 883 -----------LDDAVIRRLPRRIY-VDLPDAENRMKILRIFL 913 (1023)
Q Consensus 883 -----------Ld~aLlrRFd~~I~-V~lPd~eeR~~ILk~~L 913 (1023)
|++.|++||+.++- +..||+..-+.+-.++.
T Consensus 584 np~k~i~eNI~LpptLLSRFDLIylllD~~DE~~Dr~La~Hiv 626 (804)
T KOG0478|consen 584 NPNKSIIENINLPPTLLSRFDLIFLLLDKPDERSDRRLADHIV 626 (804)
T ss_pred CCCCchhhccCCChhhhhhhcEEEEEecCcchhHHHHHHHHHH
Confidence 88999999987644 56777764445544443
No 286
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=97.82 E-value=0.0003 Score=78.83 Aligned_cols=118 Identities=14% Similarity=0.124 Sum_probs=76.3
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCCc----------------EEEEeccccchhhhhhHHHHHHHHHHHHhh----
Q 001707 763 RPCKGILLFGPPGTGKTLLAKALATEAGAN----------------FISITGSTLTSKWFGDAEKLTKALFSFASK---- 822 (1023)
Q Consensus 763 ~p~~gVLL~GPPGTGKT~LArAIA~elg~~----------------fi~vs~seL~s~~~ge~e~~I~~lF~~A~k---- 822 (1023)
+-++.+||+||+|+||+.+|.++|..+-+. ++.+.+.. .+... .-..++.+-..+..
T Consensus 17 rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~-~~~~I--~idqiR~l~~~~~~~p~e 93 (290)
T PRK05917 17 KVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQG-KGRLH--SIETPRAIKKQIWIHPYE 93 (290)
T ss_pred CcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCC-CCCcC--cHHHHHHHHHHHhhCccC
Confidence 345789999999999999999999987431 12221110 00000 12233444443332
Q ss_pred cCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhcCccCCCCceEEEEEecCCCCCCcHHHHhhcCCceeecCC
Q 001707 823 LAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPFDLDDAVIRRLPRRIYVDLP 900 (1023)
Q Consensus 823 ~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~V~lP 900 (1023)
...-|++||++|.|.. ...|.|+..|+. ++.++++|..|+.++.|.+.+++|+ ..+.|+++
T Consensus 94 ~~~kv~ii~~ad~mt~------------~AaNaLLK~LEE----Pp~~~~fiL~~~~~~~ll~TI~SRc-q~~~~~~~ 154 (290)
T PRK05917 94 SPYKIYIIHEADRMTL------------DAISAFLKVLED----PPQHGVIILTSAKPQRLPPTIRSRS-LSIHIPME 154 (290)
T ss_pred CCceEEEEechhhcCH------------HHHHHHHHHhhc----CCCCeEEEEEeCChhhCcHHHHhcc-eEEEccch
Confidence 3346999999999842 234677777765 3456788888888999999999998 45666654
No 287
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=97.81 E-value=0.00015 Score=79.59 Aligned_cols=157 Identities=18% Similarity=0.130 Sum_probs=82.1
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHH--hCCcE---EEEecccc------chh-------h------hhhHHHHHHHHHHH
Q 001707 764 PCKGILLFGPPGTGKTLLAKALATE--AGANF---ISITGSTL------TSK-------W------FGDAEKLTKALFSF 819 (1023)
Q Consensus 764 p~~gVLL~GPPGTGKT~LArAIA~e--lg~~f---i~vs~seL------~s~-------~------~ge~e~~I~~lF~~ 819 (1023)
..+-|.|+|++|+|||+||..+++. ..-.| +.++...- ... . ....+.....+...
T Consensus 18 ~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~ 97 (287)
T PF00931_consen 18 EVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSSISDPKDIEELQDQLREL 97 (287)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-STSSCCSSHHHHHHHHHHH
T ss_pred CeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccchhh
Confidence 4467999999999999999999987 33221 22222211 000 0 01123333444443
Q ss_pred HhhcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhcCccCCCCceEEEEEecCCCCCCcHHHHhhcCCceeecC
Q 001707 820 ASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPFDLDDAVIRRLPRRIYVDL 899 (1023)
Q Consensus 820 A~k~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~V~l 899 (1023)
-...+++|+||+++... .+..+...+.. ...+.-||.||....... .+... ...+.++.
T Consensus 98 -L~~~~~LlVlDdv~~~~--------------~~~~l~~~~~~----~~~~~kilvTTR~~~v~~-~~~~~-~~~~~l~~ 156 (287)
T PF00931_consen 98 -LKDKRCLLVLDDVWDEE--------------DLEELREPLPS----FSSGSKILVTTRDRSVAG-SLGGT-DKVIELEP 156 (287)
T ss_dssp -HCCTSEEEEEEEE-SHH--------------HH-------HC----HHSS-EEEEEESCGGGGT-THHSC-EEEEECSS
T ss_pred -hccccceeeeeeecccc--------------ccccccccccc----cccccccccccccccccc-ccccc-cccccccc
Confidence 34458999999998642 11122222211 112344666776543221 11111 34678888
Q ss_pred CCHHHHHHHHHHHHhccc----cCCccCHHHHHHHccCCcHHHHHHH
Q 001707 900 PDAENRMKILRIFLAHES----LESGFQFNELANATEGYSGSDLKNL 942 (1023)
Q Consensus 900 Pd~eeR~~ILk~~L~~~~----l~~dvdl~~LA~~TeGySgaDL~~L 942 (1023)
.+.++-.++|........ ........+|++.+.| .+--|..+
T Consensus 157 L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~g-lPLal~~~ 202 (287)
T PF00931_consen 157 LSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGG-LPLALKLI 202 (287)
T ss_dssp --HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT--HHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccc-cccccccc
Confidence 899999999998866443 1112335688888876 44555444
No 288
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=97.80 E-value=0.00021 Score=83.56 Aligned_cols=166 Identities=19% Similarity=0.284 Sum_probs=93.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccchhhhhhHHHHHHHHHHH---------------HhhcCCe
Q 001707 765 CKGILLFGPPGTGKTLLAKALATEA---GANFISITGSTLTSKWFGDAEKLTKALFSF---------------ASKLAPV 826 (1023)
Q Consensus 765 ~~gVLL~GPPGTGKT~LArAIA~el---g~~fi~vs~seL~s~~~ge~e~~I~~lF~~---------------A~k~~Ps 826 (1023)
...++|+|.+||||+++|+++.... +.+|+.++|..+...... ..+|.. ......+
T Consensus 162 ~~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~~~~------~~lfg~~~~~~~~~~~~~~g~~~~a~~g 235 (441)
T PRK10365 162 EATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLE------SELFGHEKGAFTGADKRREGRFVEADGG 235 (441)
T ss_pred CCeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHHHHH------HHhcCCCCCCcCCCCcCCCCceeECCCC
Confidence 3579999999999999999998765 579999999876433221 112221 1123468
Q ss_pred EEEeccchhhhhccCCCchhHHHHHHHHHHHhhhcCcc-------CCCCceEEEEEecCCCC-------CCcHHHHhhcC
Q 001707 827 IIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLR-------SKESQKILILGATNRPF-------DLDDAVIRRLP 892 (1023)
Q Consensus 827 IIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~-------~~~~~~VlVIaTTN~p~-------~Ld~aLlrRFd 892 (1023)
+||||||+.|... .. ..|+..++.-. ......+.+|+||+.+- .+.+.|..|+.
T Consensus 236 tl~ldei~~l~~~--------~q----~~l~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~~~~~~~~~~~~~~l~~~l~ 303 (441)
T PRK10365 236 TLFLDEIGDISPM--------MQ----VRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAAEVNAGRFRQDLYYRLN 303 (441)
T ss_pred EEEEeccccCCHH--------HH----HHHHHHHccCcEEeCCCCceeeeceEEEEeCCCCHHHHHHcCCchHHHHHHhc
Confidence 9999999998422 11 23333332210 00112456777775531 24455555663
Q ss_pred CceeecCCCHHHHHH----HHHHHHhccc----cC-CccCH---HHHHHHccCCcHHHHHHHHHHHHHH
Q 001707 893 RRIYVDLPDAENRMK----ILRIFLAHES----LE-SGFQF---NELANATEGYSGSDLKNLCIAAAYR 949 (1023)
Q Consensus 893 ~~I~V~lPd~eeR~~----ILk~~L~~~~----l~-~dvdl---~~LA~~TeGySgaDL~~L~~~Aa~~ 949 (1023)
.+.+..|...+|.+ +++.++.... .. ..+.- ..|....=.-+.++|+++++.|+..
T Consensus 304 -~~~i~~ppLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgN~reL~~~~~~~~~~ 371 (441)
T PRK10365 304 -VVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENAVERAVVL 371 (441)
T ss_pred -cceecCCChhhcchhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCCHHHHHHHHHHHHHHh
Confidence 46677777766644 4555544321 10 11222 2333222122557788877776654
No 289
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=97.78 E-value=0.00011 Score=84.86 Aligned_cols=103 Identities=17% Similarity=0.237 Sum_probs=56.2
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHhCC-cEEEEeccccchhhhhhH------HHHHHHHHHHHhhcCCeEEEeccch
Q 001707 762 LRPCKGILLFGPPGTGKTLLAKALATEAGA-NFISITGSTLTSKWFGDA------EKLTKALFSFASKLAPVIIFVDEVD 834 (1023)
Q Consensus 762 i~p~~gVLL~GPPGTGKT~LArAIA~elg~-~fi~vs~seL~s~~~ge~------e~~I~~lF~~A~k~~PsIIfIDEID 834 (1023)
..+++||+||||+|+|||+|+-.+...+.. .-..+....++....... ...+..+-... ...-.||++||++
T Consensus 59 ~~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~Fm~~vh~~l~~~~~~~~~l~~va~~l-~~~~~lLcfDEF~ 137 (362)
T PF03969_consen 59 PPPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEFMLDVHSRLHQLRGQDDPLPQVADEL-AKESRLLCFDEFQ 137 (362)
T ss_pred CCCCceEEEECCCCCchhHHHHHHHHhCCccccccccccHHHHHHHHHHHHHhCCCccHHHHHHHH-HhcCCEEEEeeee
Confidence 457899999999999999999999888744 111111122222111111 00111111111 1223599999997
Q ss_pred hhhhccCCCchhHHHHHHHHHHHhhhcCccCCCCceEEEEEecCCC
Q 001707 835 SLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRP 880 (1023)
Q Consensus 835 ~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~~~~~VlVIaTTN~p 880 (1023)
.- ....-.++..|+..+- ..++++|+|+|.+
T Consensus 138 V~---------DiaDAmil~rLf~~l~------~~gvvlVaTSN~~ 168 (362)
T PF03969_consen 138 VT---------DIADAMILKRLFEALF------KRGVVLVATSNRP 168 (362)
T ss_pred cc---------chhHHHHHHHHHHHHH------HCCCEEEecCCCC
Confidence 63 1112233334443331 2468899999874
No 290
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=97.78 E-value=8.7e-05 Score=90.37 Aligned_cols=127 Identities=12% Similarity=0.132 Sum_probs=81.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC--CcEEEEeccccchhhhhhH--HHHHH---HHHH--HHhhcCCeEEEeccchhh
Q 001707 766 KGILLFGPPGTGKTLLAKALATEAG--ANFISITGSTLTSKWFGDA--EKLTK---ALFS--FASKLAPVIIFVDEVDSL 836 (1023)
Q Consensus 766 ~gVLL~GPPGTGKT~LArAIA~elg--~~fi~vs~seL~s~~~ge~--e~~I~---~lF~--~A~k~~PsIIfIDEID~L 836 (1023)
.||||.|++||||++++++++.-+. .||+.+..+--....+|.. +..++ ..|. ........||||||+..+
T Consensus 26 gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~Dl~~~l~~g~~~~~pGlla~Ah~GvL~lDe~n~~ 105 (584)
T PRK13406 26 GGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGLDLAATLRAGRPVAQRGLLAEADGGVLVLAMAERL 105 (584)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCchHHhHhhcCCcCCCCCceeeccCCEEEecCcccC
Confidence 4799999999999999999999874 5887765543333333322 22221 0010 001113479999999887
Q ss_pred hhccCCCchhHHHHHHHHHHHhhhc---------CccCCCCceEEEEEecCCC---CCCcHHHHhhcCCceeecCCCHHH
Q 001707 837 LGARGGAFEHEATRRMRNEFMSAWD---------GLRSKESQKILILGATNRP---FDLDDAVIRRLPRRIYVDLPDAEN 904 (1023)
Q Consensus 837 ~~~r~~~~~~e~~~ril~~LL~~Ld---------gl~~~~~~~VlVIaTTN~p---~~Ld~aLlrRFd~~I~V~lPd~ee 904 (1023)
- ..++..|+..|+ +....-..+++||+|-|.. ..|.+++++||+..+.+..|+..+
T Consensus 106 ~------------~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLDRf~l~v~v~~~~~~~ 173 (584)
T PRK13406 106 E------------PGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALADRLAFHLDLDGLALRD 173 (584)
T ss_pred C------------HHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhHhheEEEEEcCCCChHH
Confidence 3 344555555554 2222234578888874432 349999999999999998877543
No 291
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.77 E-value=0.00073 Score=80.07 Aligned_cols=173 Identities=16% Similarity=0.223 Sum_probs=90.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecc-------ccchhh------hhhHHHHHHHHHHHHh-----------
Q 001707 766 KGILLFGPPGTGKTLLAKALATEAGANFISITGS-------TLTSKW------FGDAEKLTKALFSFAS----------- 821 (1023)
Q Consensus 766 ~gVLL~GPPGTGKT~LArAIA~elg~~fi~vs~s-------eL~s~~------~ge~e~~I~~lF~~A~----------- 821 (1023)
+-+||+||+|||||+.++.++.++|+.++.-..+ .+-... ....-.........+.
T Consensus 111 ~iLLltGPsGcGKSTtvkvLskelg~~~~Ew~Npi~~~~~~~~h~~t~~~~~~~~s~L~~fesFler~~kyg~l~~~g~~ 190 (634)
T KOG1970|consen 111 RILLLTGPSGCGKSTTVKVLSKELGYQLIEWSNPINLKEPENLHNETSFLMFPYQSQLAVFESFLLRATKYGSLQMSGDD 190 (634)
T ss_pred eEEEEeCCCCCCchhHHHHHHHhhCceeeeecCCccccccccccccchhcccchhhHHHHHHHHHHHHHhhchhhhcccc
Confidence 4689999999999999999999999988876522 111111 1100011111111121
Q ss_pred -hcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhcCccCCCCceEEEEEe-cCCCCCCcHHHHh--------hc
Q 001707 822 -KLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGA-TNRPFDLDDAVIR--------RL 891 (1023)
Q Consensus 822 -k~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~~~~~VlVIaT-TN~p~~Ld~aLlr--------RF 891 (1023)
...+.+|+|||+=..+... ..+..+.++. ++-.. ..-++++|.| +..++..++..+. |.
T Consensus 191 ~~~~~~liLveDLPn~~~~d----~~~~f~evL~----~y~s~---g~~PlIf~iTd~~~~g~nnq~rlf~~d~q~~~ri 259 (634)
T KOG1970|consen 191 LRTDKKLILVEDLPNQFYRD----DSETFREVLR----LYVSI---GRCPLIFIITDSLSNGNNNQDRLFPKDIQEEPRI 259 (634)
T ss_pred cccCceEEEeeccchhhhhh----hHHHHHHHHH----HHHhc---CCCcEEEEEeccccCCCcchhhhchhhhhhccCc
Confidence 1246799999997654221 1222233333 22211 1223333333 3334444332221 44
Q ss_pred CCceeecCCCHHHHHHHHHHHHhccccCCc----cCHHHHHHHccCCcHHHHHHHHHHHHHHHH
Q 001707 892 PRRIYVDLPDAENRMKILRIFLAHESLESG----FQFNELANATEGYSGSDLKNLCIAAAYRPV 951 (1023)
Q Consensus 892 d~~I~V~lPd~eeR~~ILk~~L~~~~l~~d----vdl~~LA~~TeGySgaDL~~L~~~Aa~~Ai 951 (1023)
..|.|.+-...-..+.|+.++........ .+...+-..+.| +++||+.++....+-++
T Consensus 260 -~~IsFNPIa~T~MKK~L~ric~~e~~~~s~~k~~~~~~v~~i~~~-s~GDIRsAInsLQlsss 321 (634)
T KOG1970|consen 260 -SNISFNPIAPTIMKKFLKRICRIEANKKSGIKVPDTAEVELICQG-SGGDIRSAINSLQLSSS 321 (634)
T ss_pred -ceEeecCCcHHHHHHHHHHHHHHhcccccCCcCchhHHHHHHHHh-cCccHHHHHhHhhhhcc
Confidence 35677776777777777777664432211 223333334443 55699988877666543
No 292
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=97.75 E-value=0.0013 Score=73.85 Aligned_cols=154 Identities=16% Similarity=0.096 Sum_probs=88.4
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCCcE----------------EEEeccccchh-hhhh--HHHHHHHHHHHHh--
Q 001707 763 RPCKGILLFGPPGTGKTLLAKALATEAGANF----------------ISITGSTLTSK-WFGD--AEKLTKALFSFAS-- 821 (1023)
Q Consensus 763 ~p~~gVLL~GPPGTGKT~LArAIA~elg~~f----------------i~vs~seL~s~-~~ge--~e~~I~~lF~~A~-- 821 (1023)
+.++.+||+|| .||+.+|.++|..+-+.- ..-+-+++.-- ..|. .-..|+.+-..+.
T Consensus 22 rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~~~~I~idqIR~l~~~~~~~ 99 (290)
T PRK07276 22 RLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQGQVIKTDTIRELVKNFSQS 99 (290)
T ss_pred CcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCCCCcCCHHHHHHHHHHHhhC
Confidence 34578999996 689999999998763210 00001111100 0010 1233444433332
Q ss_pred --hcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhcCccCCCCceEEEEEecCCCCCCcHHHHhhcCCceeecC
Q 001707 822 --KLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPFDLDDAVIRRLPRRIYVDL 899 (1023)
Q Consensus 822 --k~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~V~l 899 (1023)
.....|++||++|.|. ....|.||..++.- +.++++|.+|+.++.+-+.+++|+ ..+.|+.
T Consensus 100 p~~~~~kV~II~~ad~m~------------~~AaNaLLKtLEEP----p~~t~~iL~t~~~~~lLpTI~SRc-q~i~f~~ 162 (290)
T PRK07276 100 GYEGKQQVFIIKDADKMH------------VNAANSLLKVIEEP----QSEIYIFLLTNDENKVLPTIKSRT-QIFHFPK 162 (290)
T ss_pred cccCCcEEEEeehhhhcC------------HHHHHHHHHHhcCC----CCCeEEEEEECChhhCchHHHHcc-eeeeCCC
Confidence 2234699999999984 22356777777653 345778888888999999999999 5677755
Q ss_pred CCHHHHHHHHHHHHhccccCCccCHHHHHHHccCCcHHHHHHHH
Q 001707 900 PDAENRMKILRIFLAHESLESGFQFNELANATEGYSGSDLKNLC 943 (1023)
Q Consensus 900 Pd~eeR~~ILk~~L~~~~l~~dvdl~~LA~~TeGySgaDL~~L~ 943 (1023)
+.+...+++. ..++.. +...++....| ++.....+.
T Consensus 163 -~~~~~~~~L~----~~g~~~--~~a~~la~~~~-s~~~A~~l~ 198 (290)
T PRK07276 163 -NEAYLIQLLE----QKGLLK--TQAELLAKLAQ-STSEAEKLA 198 (290)
T ss_pred -cHHHHHHHHH----HcCCCh--HHHHHHHHHCC-CHHHHHHHh
Confidence 4444444443 233321 22334444445 555555555
No 293
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=97.69 E-value=0.00078 Score=74.30 Aligned_cols=121 Identities=12% Similarity=0.063 Sum_probs=77.4
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHhCCc----------------------EEEEeccccchhhhhhHHHHHHHHHHH
Q 001707 762 LRPCKGILLFGPPGTGKTLLAKALATEAGAN----------------------FISITGSTLTSKWFGDAEKLTKALFSF 819 (1023)
Q Consensus 762 i~p~~gVLL~GPPGTGKT~LArAIA~elg~~----------------------fi~vs~seL~s~~~ge~e~~I~~lF~~ 819 (1023)
..+++.+||+||+|+||..+|.++|+.+-+. +..+.... ..-...+....+..+...
T Consensus 4 ~~~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~-~~I~id~ir~l~~~l~~~ 82 (261)
T PRK05818 4 KNKTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQK-NPIKKEDALSIINKLNRP 82 (261)
T ss_pred CCCCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCc-ccCCHHHHHHHHHHHccC
Confidence 3567889999999999999999999887221 11111110 000111222222222222
Q ss_pred Hhh-cCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhcCccCCCCceEEEEEecCCCCCCcHHHHhhcCCceeec
Q 001707 820 ASK-LAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPFDLDDAVIRRLPRRIYVD 898 (1023)
Q Consensus 820 A~k-~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~V~ 898 (1023)
+.. ...-|++|+++|.+. ....|.||..++. ++.++++|.+|+.++.+.+.+++|+. .+.++
T Consensus 83 s~e~~~~KV~II~~ae~m~------------~~AaNaLLK~LEE----Pp~~t~fiLit~~~~~lLpTI~SRCq-~~~~~ 145 (261)
T PRK05818 83 SVESNGKKIYIIYGIEKLN------------KQSANSLLKLIEE----PPKNTYGIFTTRNENNILNTILSRCV-QYVVL 145 (261)
T ss_pred chhcCCCEEEEeccHhhhC------------HHHHHHHHHhhcC----CCCCeEEEEEECChHhCchHhhhhee-eeecC
Confidence 212 235799999999983 2335777777766 34568888899999999999999984 46666
Q ss_pred CC
Q 001707 899 LP 900 (1023)
Q Consensus 899 lP 900 (1023)
.+
T Consensus 146 ~~ 147 (261)
T PRK05818 146 SK 147 (261)
T ss_pred Ch
Confidence 55
No 294
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.66 E-value=0.00035 Score=73.72 Aligned_cols=79 Identities=24% Similarity=0.418 Sum_probs=54.1
Q ss_pred CCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccchhhhh-----------------------hHHHH
Q 001707 759 GNLLRPCKGILLFGPPGTGKTLLAKALATEA---GANFISITGSTLTSKWFG-----------------------DAEKL 812 (1023)
Q Consensus 759 ~gli~p~~gVLL~GPPGTGKT~LArAIA~el---g~~fi~vs~seL~s~~~g-----------------------e~e~~ 812 (1023)
+| +.+..-++|+||||+|||+++..++... +..++.++...+...... +....
T Consensus 7 GG-i~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~~~~~rl~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 85 (209)
T TIGR02237 7 GG-VERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEGLSPERFKQIAEDRPERALSNFIVFEVFDFDEQGVA 85 (209)
T ss_pred CC-CCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhChHHHhcCEEEEECCCHHHHHHH
Confidence 45 4566779999999999999999988654 667888887652111100 11222
Q ss_pred HHHHHHHHhhcCCeEEEeccchhhhh
Q 001707 813 TKALFSFASKLAPVIIFVDEVDSLLG 838 (1023)
Q Consensus 813 I~~lF~~A~k~~PsIIfIDEID~L~~ 838 (1023)
+..+...+....+.+|+||-+..+..
T Consensus 86 ~~~l~~~~~~~~~~lvVIDSis~l~~ 111 (209)
T TIGR02237 86 IQKTSKFIDRDSASLVVVDSFTALYR 111 (209)
T ss_pred HHHHHHHHhhcCccEEEEeCcHHHhH
Confidence 44444455556789999999998864
No 295
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.66 E-value=0.00017 Score=81.01 Aligned_cols=161 Identities=24% Similarity=0.341 Sum_probs=94.9
Q ss_pred cccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHH---HhCCcEEEEeccccchh---
Q 001707 731 DIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALAT---EAGANFISITGSTLTSK--- 804 (1023)
Q Consensus 731 DIgGle~vk~~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~---elg~~fi~vs~seL~s~--- 804 (1023)
.+.|..+..+.+.+++.+-.. .....+|++.||.|+|||+|...... +.|-+|+.+........
T Consensus 25 ~l~g~~~~~~~l~~~lkqt~~----------~gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~ 94 (408)
T KOG2228|consen 25 NLFGVQDEQKHLSELLKQTIL----------HGESNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKI 94 (408)
T ss_pred ceeehHHHHHHHHHHHHHHHH----------hcCCCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHH
Confidence 345777777777777643211 12335799999999999987665543 56777766654322111
Q ss_pred ------------------hhhhHHHHHHHHHHHHhh-----cCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhc
Q 001707 805 ------------------WFGDAEKLTKALFSFASK-----LAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWD 861 (1023)
Q Consensus 805 ------------------~~ge~e~~I~~lF~~A~k-----~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ld 861 (1023)
.+|.....+..+....++ ..+.|.++||||..++.. .++++..+-
T Consensus 95 al~~I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~------------rQtllYnlf 162 (408)
T KOG2228|consen 95 ALKGITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHS------------RQTLLYNLF 162 (408)
T ss_pred HHHHHHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccch------------hhHHHHHHH
Confidence 111111222222222111 123455667899886443 123343333
Q ss_pred CccCCCCceEEEEEecCCCCC---CcHHHHhhcCCc-eeecC-CCHHHHHHHHHHHH
Q 001707 862 GLRSKESQKILILGATNRPFD---LDDAVIRRLPRR-IYVDL-PDAENRMKILRIFL 913 (1023)
Q Consensus 862 gl~~~~~~~VlVIaTTN~p~~---Ld~aLlrRFd~~-I~V~l-Pd~eeR~~ILk~~L 913 (1023)
.+......++.|||.|.+.+. |...+.+||.++ |++.+ ....+-..+++..+
T Consensus 163 Disqs~r~Piciig~Ttrld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 163 DISQSARAPICIIGVTTRLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred HHHhhcCCCeEEEEeeccccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 333334568999999988766 556888899877 55544 35788888888877
No 296
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.65 E-value=0.0006 Score=89.59 Aligned_cols=172 Identities=19% Similarity=0.256 Sum_probs=94.4
Q ss_pred ccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcE---EEEecc-----
Q 001707 728 RFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANF---ISITGS----- 799 (1023)
Q Consensus 728 tfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~elg~~f---i~vs~s----- 799 (1023)
.+++++|++...++|..++... ....+-|-|+|++|+|||+||+++++.+..+| +.++..
T Consensus 182 ~~~~~vG~~~~l~~l~~lL~l~------------~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~~~ 249 (1153)
T PLN03210 182 DFEDFVGIEDHIAKMSSLLHLE------------SEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFISKS 249 (1153)
T ss_pred ccccccchHHHHHHHHHHHccc------------cCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeeccccccc
Confidence 5778999999999998876321 12345688999999999999999998874433 111110
Q ss_pred -ccch-----hh---hhhHHHHHHHH-------------HHHHhhcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHH
Q 001707 800 -TLTS-----KW---FGDAEKLTKAL-------------FSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFM 857 (1023)
Q Consensus 800 -eL~s-----~~---~ge~e~~I~~l-------------F~~A~k~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL 857 (1023)
.... .+ ..-....+..+ ....-..++.+|+|||++.. ..+..+.
T Consensus 250 ~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~~~~~~~~L~~krvLLVLDdv~~~--------------~~l~~L~ 315 (1153)
T PLN03210 250 MEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYHLGAMEERLKHRKVLIFIDDLDDQ--------------DVLDALA 315 (1153)
T ss_pred hhhcccccccccchhHHHHHHHHHHHhCCCCcccCCHHHHHHHHhCCeEEEEEeCCCCH--------------HHHHHHH
Confidence 0000 00 00001111111 11112346789999998742 1122222
Q ss_pred hhhcCccCCCCceEEEEEecCCCCCCcHHHHh--hcCCceeecCCCHHHHHHHHHHHHhccccCCccCHH----HHHHHc
Q 001707 858 SAWDGLRSKESQKILILGATNRPFDLDDAVIR--RLPRRIYVDLPDAENRMKILRIFLAHESLESGFQFN----ELANAT 931 (1023)
Q Consensus 858 ~~Ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlr--RFd~~I~V~lPd~eeR~~ILk~~L~~~~l~~dvdl~----~LA~~T 931 (1023)
...+.. +..-.||.||... .+++ ..+..+.++.|+.++..++|..++-.... +..++. ++++.+
T Consensus 316 ~~~~~~----~~GsrIIiTTrd~-----~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~-~~~~~~~l~~~iv~~c 385 (1153)
T PLN03210 316 GQTQWF----GSGSRIIVITKDK-----HFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNS-PPDGFMELASEVALRA 385 (1153)
T ss_pred hhCccC----CCCcEEEEEeCcH-----HHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCC-CcHHHHHHHHHHHHHh
Confidence 211111 1123355577643 3333 35677889999999999999877643322 122233 355556
Q ss_pred cCCc
Q 001707 932 EGYS 935 (1023)
Q Consensus 932 eGyS 935 (1023)
.|..
T Consensus 386 ~GLP 389 (1153)
T PLN03210 386 GNLP 389 (1153)
T ss_pred CCCc
Confidence 6543
No 297
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.63 E-value=0.00045 Score=70.98 Aligned_cols=71 Identities=30% Similarity=0.353 Sum_probs=47.0
Q ss_pred EEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccchhhh------h-----------------------hHH-----
Q 001707 768 ILLFGPPGTGKTLLAKALATEA---GANFISITGSTLTSKWF------G-----------------------DAE----- 810 (1023)
Q Consensus 768 VLL~GPPGTGKT~LArAIA~el---g~~fi~vs~seL~s~~~------g-----------------------e~e----- 810 (1023)
+||+||||||||+|+..++.+. |.+++.++..+-..... | ..+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~~~~~~~~~~~g~~~~~l~~~g~l~~~d~~~~~~s~~~~~~~~ 81 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESPEELIENAESLGWDLERLEDEGLLAIVDADPDEIGPAESSLRL 81 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHcCCChHHHHhcCCeEEEecCccccchhhhhhhH
Confidence 7999999999999999887754 66777766532211100 0 000
Q ss_pred HHHHHHHHHHhhcCCeEEEeccchhhhh
Q 001707 811 KLTKALFSFASKLAPVIIFVDEVDSLLG 838 (1023)
Q Consensus 811 ~~I~~lF~~A~k~~PsIIfIDEID~L~~ 838 (1023)
..+..+...+....|.+|+||++..+..
T Consensus 82 ~~~~~i~~~~~~~~~~~lviD~~~~~~~ 109 (187)
T cd01124 82 ELIQRLKDAIEEFKAKRVVIDSVSGLLL 109 (187)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCcHHHhh
Confidence 1234445555667899999999998764
No 298
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.58 E-value=0.00015 Score=78.25 Aligned_cols=22 Identities=45% Similarity=0.629 Sum_probs=20.1
Q ss_pred CceEEEEcCCCChHHHHHHHHH
Q 001707 765 CKGILLFGPPGTGKTLLAKALA 786 (1023)
Q Consensus 765 ~~gVLL~GPPGTGKT~LArAIA 786 (1023)
+..+||||+||+|||++|+.++
T Consensus 12 ~~~~liyG~~G~GKtt~a~~~~ 33 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKYLP 33 (220)
T ss_pred CcEEEEECCCCCCHHHHHHhcC
Confidence 4569999999999999999997
No 299
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=97.57 E-value=0.0025 Score=71.93 Aligned_cols=125 Identities=11% Similarity=0.052 Sum_probs=81.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCC-------------cEEEEeccccchhhhhhHHHHHHHHHHHHhh-----cCCe
Q 001707 765 CKGILLFGPPGTGKTLLAKALATEAGA-------------NFISITGSTLTSKWFGDAEKLTKALFSFASK-----LAPV 826 (1023)
Q Consensus 765 ~~gVLL~GPPGTGKT~LArAIA~elg~-------------~fi~vs~seL~s~~~ge~e~~I~~lF~~A~k-----~~Ps 826 (1023)
.+..||+|+.|.||+.+|+++++.+-+ .++.++... ... .-..++.+...... ...-
T Consensus 18 ~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g---~~i--~vd~Ir~l~~~~~~~~~~~~~~K 92 (299)
T PRK07132 18 SHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFD---KDL--SKSEFLSAINKLYFSSFVQSQKK 92 (299)
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCC---CcC--CHHHHHHHHHHhccCCcccCCce
Confidence 457889999999999999999998721 223332100 100 11223333333321 2457
Q ss_pred EEEeccchhhhhccCCCchhHHHHHHHHHHHhhhcCccCCCCceEEEEEecCCCCCCcHHHHhhcCCceeecCCCHHHHH
Q 001707 827 IIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRM 906 (1023)
Q Consensus 827 IIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~V~lPd~eeR~ 906 (1023)
|++||++|.+. ....+.|+..++.. +..+++|.+|+.+..+-+.+++|+ ..+.+.+|+.++..
T Consensus 93 vvII~~~e~m~------------~~a~NaLLK~LEEP----p~~t~~il~~~~~~kll~TI~SRc-~~~~f~~l~~~~l~ 155 (299)
T PRK07132 93 ILIIKNIEKTS------------NSLLNALLKTIEEP----PKDTYFLLTTKNINKVLPTIVSRC-QVFNVKEPDQQKIL 155 (299)
T ss_pred EEEEecccccC------------HHHHHHHHHHhhCC----CCCeEEEEEeCChHhChHHHHhCe-EEEECCCCCHHHHH
Confidence 99999998873 22345677777663 334566666667788999999999 57889999888887
Q ss_pred HHHHH
Q 001707 907 KILRI 911 (1023)
Q Consensus 907 ~ILk~ 911 (1023)
..|..
T Consensus 156 ~~l~~ 160 (299)
T PRK07132 156 AKLLS 160 (299)
T ss_pred HHHHH
Confidence 77654
No 300
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=97.57 E-value=5.1e-05 Score=86.54 Aligned_cols=163 Identities=27% Similarity=0.368 Sum_probs=81.8
Q ss_pred cccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccc-----c----
Q 001707 731 DIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGST-----L---- 801 (1023)
Q Consensus 731 DIgGle~vk~~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~elg~~fi~vs~se-----L---- 801 (1023)
.|.|.+.+|..+.-.+...... ....+...+..-+|||.|.||||||.|.+.++..+...++ +++.. |
T Consensus 25 ~i~g~~~iK~aill~L~~~~~~--~~~~~~~~r~~ihiLlvGdpg~gKS~ll~~~~~~~pr~v~-~~g~~~s~~gLta~~ 101 (331)
T PF00493_consen 25 SIYGHEDIKKAILLQLFGGVEK--NDPDGTRIRGNIHILLVGDPGTGKSQLLKYVAKLAPRSVY-TSGKGSSAAGLTASV 101 (331)
T ss_dssp TTTT-HHHHHHHCCCCTT--SC--CCCT-TEE--S--EEEECSCHHCHHHHHHCCCCT-SSEEE-EECCGSTCCCCCEEE
T ss_pred cCcCcHHHHHHHHHHHHhcccc--ccccccccccccceeeccchhhhHHHHHHHHHhhCCceEE-ECCCCcccCCcccee
Confidence 4678888887774333221111 0111111334568999999999999999988765543332 22111 1
Q ss_pred -----chhhhhhHHHHHHHHHHHHhhcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhcC---------ccCCC
Q 001707 802 -----TSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDG---------LRSKE 867 (1023)
Q Consensus 802 -----~s~~~ge~e~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldg---------l~~~~ 867 (1023)
.+.|.-+.. .+-.| ...|++|||+|.+-.. . ...|+..|+. +...-
T Consensus 102 ~~d~~~~~~~leaG-----alvla---d~GiccIDe~dk~~~~---------~---~~~l~eaMEqq~isi~kagi~~~l 161 (331)
T PF00493_consen 102 SRDPVTGEWVLEAG-----ALVLA---DGGICCIDEFDKMKED---------D---RDALHEAMEQQTISIAKAGIVTTL 161 (331)
T ss_dssp CCCGGTSSECEEE------HHHHC---TTSEEEECTTTT--CH---------H---HHHHHHHHHCSCEEECTSSSEEEE
T ss_pred ccccccceeEEeCC-----chhcc---cCceeeecccccccch---------H---HHHHHHHHHcCeeccchhhhcccc
Confidence 122221221 12222 4589999999998321 1 1223333321 11112
Q ss_pred CceEEEEEecCCCC-------------CCcHHHHhhcCCceee-cCCCHHHHHHHHHHHHhcc
Q 001707 868 SQKILILGATNRPF-------------DLDDAVIRRLPRRIYV-DLPDAENRMKILRIFLAHE 916 (1023)
Q Consensus 868 ~~~VlVIaTTN~p~-------------~Ld~aLlrRFd~~I~V-~lPd~eeR~~ILk~~L~~~ 916 (1023)
+.+.-|+|++|+.. .+++.+++|||..+.+ ..|+.+.-..+.++.+...
T Consensus 162 ~ar~svlaa~NP~~g~~~~~~~~~~ni~l~~~LLSRFDLif~l~D~~d~~~D~~la~~il~~~ 224 (331)
T PF00493_consen 162 NARCSVLAAANPKFGRYDPNKSLSENINLPPPLLSRFDLIFLLRDKPDEEEDERLAEHILDSH 224 (331)
T ss_dssp E---EEEEEE--TT--S-TTS-CGCCT-S-CCCHCC-SEEECC--TTT-HHHHHHHHHHHTTT
T ss_pred cchhhhHHHHhhhhhhcchhhhhHHhcccchhhHhhcCEEEEeccccccccccccceEEEecc
Confidence 34677999998765 3777999999977554 6688777777777776643
No 301
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=97.49 E-value=0.0021 Score=71.67 Aligned_cols=131 Identities=17% Similarity=0.177 Sum_probs=74.3
Q ss_pred ccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---C--CcEEEE-----ecc--
Q 001707 732 IGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEA---G--ANFISI-----TGS-- 799 (1023)
Q Consensus 732 IgGle~vk~~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~el---g--~~fi~v-----s~s-- 799 (1023)
+.|+.-+++.+...+...+.++. -+.|--+=|||++||||.++++.||+.+ | .+++.. +++
T Consensus 84 lfGQHla~~~Vv~alk~~~~n~~-------p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~~ 156 (344)
T KOG2170|consen 84 LFGQHLAKQLVVNALKSHWANPN-------PRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFPHA 156 (344)
T ss_pred hhchHHHHHHHHHHHHHHhcCCC-------CCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCCCh
Confidence 45677677777666655444432 1233445588999999999999999987 2 233221 111
Q ss_pred ccchhhhhhHHHHHHHHHHHHhhcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhcCccCCCCceEEEEEecCC
Q 001707 800 TLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNR 879 (1023)
Q Consensus 800 eL~s~~~ge~e~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~~~~~VlVIaTTN~ 879 (1023)
.-+..|. ++....+-..+...+.+|.++||+|.|- +. .-..+.-|+............+-++|.-+|.
T Consensus 157 ~~ie~Yk---~eL~~~v~~~v~~C~rslFIFDE~DKmp--------~g-Lld~lkpfLdyyp~v~gv~frkaIFIfLSN~ 224 (344)
T KOG2170|consen 157 SKIEDYK---EELKNRVRGTVQACQRSLFIFDEVDKLP--------PG-LLDVLKPFLDYYPQVSGVDFRKAIFIFLSNA 224 (344)
T ss_pred HHHHHHH---HHHHHHHHHHHHhcCCceEEechhhhcC--------Hh-HHHHHhhhhccccccccccccceEEEEEcCC
Confidence 1122222 3334445555667788999999999982 11 1222233333222222234456777777765
Q ss_pred CC
Q 001707 880 PF 881 (1023)
Q Consensus 880 p~ 881 (1023)
-.
T Consensus 225 gg 226 (344)
T KOG2170|consen 225 GG 226 (344)
T ss_pred cc
Confidence 44
No 302
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.49 E-value=0.0081 Score=71.17 Aligned_cols=198 Identities=19% Similarity=0.218 Sum_probs=97.9
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccchh-------h--------hh-----hHHHHHHHHHHHH
Q 001707 764 PCKGILLFGPPGTGKTLLAKALATEA---GANFISITGSTLTSK-------W--------FG-----DAEKLTKALFSFA 820 (1023)
Q Consensus 764 p~~gVLL~GPPGTGKT~LArAIA~el---g~~fi~vs~seL~s~-------~--------~g-----e~e~~I~~lF~~A 820 (1023)
+|..|+|+|++|+|||+++..+|..+ |..+..+++...... + .+ .....+......+
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~~ 173 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEKF 173 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHh
Confidence 46789999999999999999999877 566666665443110 0 00 1122233444444
Q ss_pred hhcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhcCccCCCCceEEEEEecCCCCCCcHHHHhhcCCc-----e
Q 001707 821 SKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPFDLDDAVIRRLPRR-----I 895 (1023)
Q Consensus 821 ~k~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~-----I 895 (1023)
... .+|+||...++. ....++.++....... .+...++|+-++...+.++. .++|... +
T Consensus 174 ~~~--DvVIIDTAGr~~----------~d~~lm~El~~l~~~~--~pdevlLVvda~~gq~av~~--a~~F~~~l~i~gv 237 (437)
T PRK00771 174 KKA--DVIIVDTAGRHA----------LEEDLIEEMKEIKEAV--KPDEVLLVIDATIGQQAKNQ--AKAFHEAVGIGGI 237 (437)
T ss_pred hcC--CEEEEECCCccc----------chHHHHHHHHHHHHHh--cccceeEEEeccccHHHHHH--HHHHHhcCCCCEE
Confidence 333 789999886642 1122233332222212 12334566655543332322 2334321 2
Q ss_pred eecCCCHHHHHH-HHHHHHh-ccc---------c--CCccCHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001707 896 YVDLPDAENRMK-ILRIFLA-HES---------L--ESGFQFNELANATEGYSGSDLKNLCIAAAYRPVQELLEEERKLF 962 (1023)
Q Consensus 896 ~V~lPd~eeR~~-ILk~~L~-~~~---------l--~~dvdl~~LA~~TeGySgaDL~~L~~~Aa~~Airr~l~~e~~~~ 962 (1023)
-+...|...|.- +|..... ..+ + -..++...++.+.-|. .|+..|++.|... +.+-..++-...
T Consensus 238 IlTKlD~~a~~G~~ls~~~~~~~Pi~fig~Ge~v~Dle~f~~~~~~~~ilgm--gd~~~l~e~~~~~-~~~~~~~~~~~~ 314 (437)
T PRK00771 238 IITKLDGTAKGGGALSAVAETGAPIKFIGTGEKIDDLERFDPDRFISRLLGM--GDLESLLEKVEEA-LDEEEEEKDVEK 314 (437)
T ss_pred EEecccCCCcccHHHHHHHHHCcCEEEEecCCCcccCCcCCHHHHHHHHhCC--CChHHHHHHHHHh-hhHHHHHHHHHH
Confidence 233344444332 3332211 111 1 1234567777776553 5888888776542 221100000000
Q ss_pred HhhCCCCCCCCcCCCCHHHHHHHHHhh
Q 001707 963 IQRGKNDAAPVLRPLKLEDFIQSKAKV 989 (1023)
Q Consensus 963 ~~~~~~~~~~~~r~Lt~eDF~~Al~kv 989 (1023)
... -..+++||..-++.+
T Consensus 315 ~~~---------~~f~l~d~~~q~~~~ 332 (437)
T PRK00771 315 MMK---------GKFTLKDMYKQLEAM 332 (437)
T ss_pred HHc---------CCcCHHHHHHHHHHH
Confidence 111 258899998876644
No 303
>PHA00729 NTP-binding motif containing protein
Probab=97.48 E-value=0.00015 Score=78.47 Aligned_cols=27 Identities=30% Similarity=0.410 Sum_probs=24.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCc
Q 001707 766 KGILLFGPPGTGKTLLAKALATEAGAN 792 (1023)
Q Consensus 766 ~gVLL~GPPGTGKT~LArAIA~elg~~ 792 (1023)
.+|+|+|+||||||+||.+||..++..
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l~~~ 44 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDVFWK 44 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 379999999999999999999987633
No 304
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=97.48 E-value=0.00017 Score=90.78 Aligned_cols=164 Identities=21% Similarity=0.256 Sum_probs=105.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccchhhhh-----h--HHHHHHHHH---HHHh--hcCCeEEEeccch
Q 001707 767 GILLFGPPGTGKTLLAKALATEAGANFISITGSTLTSKWFG-----D--AEKLTKALF---SFAS--KLAPVIIFVDEVD 834 (1023)
Q Consensus 767 gVLL~GPPGTGKT~LArAIA~elg~~fi~vs~seL~s~~~g-----e--~e~~I~~lF---~~A~--k~~PsIIfIDEID 834 (1023)
.+|++||||.|||+.+.++|.++|+.++.++.++..++... + ....+...| .... ...-.||++||+|
T Consensus 359 ~~l~~G~pGigKT~~~h~~~k~~g~~v~E~Nas~~RSk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD 438 (871)
T KOG1968|consen 359 ALLLSGPPGIGKTTAAHKAAKELGFKVVEKNASDVRSKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVD 438 (871)
T ss_pred HHHhcCCCCCCchhhHhhhhhhcccceeecCccccccccHHHhhhhccccccchhhhhcccccccccccceeEEEEeccc
Confidence 37999999999999999999999999999999877655322 1 112233333 0000 1112399999999
Q ss_pred hhhhccCCCchhHHHHHHHHHHHhhhcCccCCCCceEEEEEecCCCCCCcHHHHhhcCCceeecCCCHHHHHHHHHHHHh
Q 001707 835 SLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLA 914 (1023)
Q Consensus 835 ~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~V~lPd~eeR~~ILk~~L~ 914 (1023)
.+.... +..+.++...... ..+-||+++|.........+.+....++|+.|+.+.+...+..++.
T Consensus 439 ~~~~~d---------Rg~v~~l~~l~~k------s~~Piv~~cndr~~p~sr~~~~~~~~l~f~kP~~~~i~~ri~si~~ 503 (871)
T KOG1968|consen 439 GMFGED---------RGGVSKLSSLCKK------SSRPLVCTCNDRNLPKSRALSRACSDLRFSKPSSELIRSRIMSICK 503 (871)
T ss_pred cccchh---------hhhHHHHHHHHHh------ccCCeEEEecCCCCccccchhhhcceeeecCCcHHHHHhhhhhhhc
Confidence 987511 1223333333321 1234777888777766645555445689999999998887777776
Q ss_pred ccccC-CccCHHHHHHHccCCcHHHHHHHHHHHHHH
Q 001707 915 HESLE-SGFQFNELANATEGYSGSDLKNLCIAAAYR 949 (1023)
Q Consensus 915 ~~~l~-~dvdl~~LA~~TeGySgaDL~~L~~~Aa~~ 949 (1023)
.+.+. .+..++++...+ ++||++.+..-.+.
T Consensus 504 se~~ki~~~~l~~~s~~~----~~DiR~~i~~lq~~ 535 (871)
T KOG1968|consen 504 SEGIKISDDVLEEISKLS----GGDIRQIIMQLQFW 535 (871)
T ss_pred ccceecCcHHHHHHHHhc----ccCHHHHHHHHhhh
Confidence 55433 444566666655 56888776554433
No 305
>PRK11823 DNA repair protein RadA; Provisional
Probab=97.44 E-value=0.001 Score=78.97 Aligned_cols=101 Identities=22% Similarity=0.310 Sum_probs=64.8
Q ss_pred CCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccchhhhhh--------------HHHHHHHHHHHHh
Q 001707 759 GNLLRPCKGILLFGPPGTGKTLLAKALATEA---GANFISITGSTLTSKWFGD--------------AEKLTKALFSFAS 821 (1023)
Q Consensus 759 ~gli~p~~gVLL~GPPGTGKT~LArAIA~el---g~~fi~vs~seL~s~~~ge--------------~e~~I~~lF~~A~ 821 (1023)
+| +.+..-+||+|+||+|||+|+..+|... +.++++++..+-....... .+..+..++....
T Consensus 75 GG-i~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~~ra~rlg~~~~~l~~~~e~~l~~i~~~i~ 153 (446)
T PRK11823 75 GG-LVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIKLRAERLGLPSDNLYLLAETNLEAILATIE 153 (446)
T ss_pred CC-ccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHHHHHHHcCCChhcEEEeCCCCHHHHHHHHH
Confidence 45 4566788999999999999999998765 6788888876543221110 1122455666666
Q ss_pred hcCCeEEEeccchhhhhccCC--CchhHHHHHHHHHHHhhh
Q 001707 822 KLAPVIIFVDEVDSLLGARGG--AFEHEATRRMRNEFMSAW 860 (1023)
Q Consensus 822 k~~PsIIfIDEID~L~~~r~~--~~~~e~~~ril~~LL~~L 860 (1023)
...|.+|+||.|..+...... .......+.++..|....
T Consensus 154 ~~~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~~a 194 (446)
T PRK11823 154 EEKPDLVVIDSIQTMYSPELESAPGSVSQVRECAAELMRLA 194 (446)
T ss_pred hhCCCEEEEechhhhccccccCCCCCHHHHHHHHHHHHHHH
Confidence 778999999999988653211 112233444455555444
No 306
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=97.43 E-value=0.00034 Score=75.49 Aligned_cols=88 Identities=16% Similarity=0.189 Sum_probs=51.5
Q ss_pred CeEEEEcCchhhhhhccCCccHHHHHHHHHHHHhcCCCCEEEEecccCCC-CCccccccccccccccccccCCCCcchhh
Q 001707 486 PLIVYFPDSSLWLSRAVPRCNRKEFVRKVEEMFDQLSGPVVLICGQNKNE-TGPKEKEKFTMILPNFGRLAKLPLPLQRL 564 (1023)
Q Consensus 486 p~Iiff~di~~~~~~s~~~~~~~~~~s~l~~~~~~~~g~v~vI~~~~~~d-~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 564 (1023)
.-|||+|||-.+-.. +++- |.-.|+ +|.+-||.|...-. ...-...+|+
T Consensus 102 ~~ILFIDEIHRlnk~-----~qe~----LlpamE--d~~idiiiG~g~~ar~~~~~l~~FT------------------- 151 (233)
T PF05496_consen 102 GDILFIDEIHRLNKA-----QQEI----LLPAME--DGKIDIIIGKGPNARSIRINLPPFT------------------- 151 (233)
T ss_dssp T-EEEECTCCC--HH-----HHHH----HHHHHH--CSEEEEEBSSSSS-BEEEEE----E-------------------
T ss_pred CcEEEEechhhccHH-----HHHH----HHHHhc--cCeEEEEeccccccceeeccCCCce-------------------
Confidence 459999999875332 2223 333455 57884544543211 1111223333
Q ss_pred hcccccCCCcchHHHHhccccEEEEcCCChHHHHHHHHH
Q 001707 565 TEGLKATKRSDDNEIYNLFTNVLSIHPPKEEDLLRTFNK 603 (1023)
Q Consensus 565 vIGmTNR~d~iDeaL~rrFe~~ieI~LPdee~Rl~Il~I 603 (1023)
+||+|.|..++...|+.||.....+..=+.+.-.+|++.
T Consensus 152 ligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r 190 (233)
T PF05496_consen 152 LIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKR 190 (233)
T ss_dssp EEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHH
T ss_pred EeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHH
Confidence 789999999999999999999888887777777777754
No 307
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.41 E-value=0.004 Score=68.26 Aligned_cols=174 Identities=24% Similarity=0.256 Sum_probs=101.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCC---cEEEEeccccc-----hhhhhh------------HHHHHHHHHHHHhh-cCC
Q 001707 767 GILLFGPPGTGKTLLAKALATEAGA---NFISITGSTLT-----SKWFGD------------AEKLTKALFSFASK-LAP 825 (1023)
Q Consensus 767 gVLL~GPPGTGKT~LArAIA~elg~---~fi~vs~seL~-----s~~~ge------------~e~~I~~lF~~A~k-~~P 825 (1023)
-+.++|+-|+|||++++|++..+.- -.+.++...+. ..++.+ .++.-+.+....++ ..|
T Consensus 53 ~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~~g~r~ 132 (269)
T COG3267 53 ILAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVKKGKRP 132 (269)
T ss_pred eEEEEecCCCchhHHHHHHHHhcCCCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHhCCCC
Confidence 4789999999999999977766632 22344433321 111111 12222333333333 346
Q ss_pred eEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhcCccCCCCceEEEEEecCCCCCCc-H---HHHhhcCCceeecCCC
Q 001707 826 VIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPFDLD-D---AVIRRLPRRIYVDLPD 901 (1023)
Q Consensus 826 sIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~~~~~VlVIaTTN~p~~Ld-~---aLlrRFd~~I~V~lPd 901 (1023)
.++++||.+.+.... -+..+. |...-.+. . ..-++++||-..-...+- + .+..|+...|.+++.+
T Consensus 133 v~l~vdEah~L~~~~-----le~Lrl----l~nl~~~~-~-~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~ 201 (269)
T COG3267 133 VVLMVDEAHDLNDSA-----LEALRL----LTNLEEDS-S-KLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLT 201 (269)
T ss_pred eEEeehhHhhhChhH-----HHHHHH----HHhhcccc-c-CceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcC
Confidence 999999999985321 122111 11111111 1 112455665442222121 1 3334887668888889
Q ss_pred HHHHHHHHHHHHhccc----cCCccCHHHHHHHccCCcHHHHHHHHHHHHHHHHH
Q 001707 902 AENRMKILRIFLAHES----LESGFQFNELANATEGYSGSDLKNLCIAAAYRPVQ 952 (1023)
Q Consensus 902 ~eeR~~ILk~~L~~~~----l~~dvdl~~LA~~TeGySgaDL~~L~~~Aa~~Air 952 (1023)
.++-..+++..++... +.++..+..+...+.| .+.-|.++|..|...|..
T Consensus 202 ~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg-~P~lin~~~~~Al~~a~~ 255 (269)
T COG3267 202 EAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQG-IPRLINNLATLALDAAYS 255 (269)
T ss_pred hHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhcc-chHHHHHHHHHHHHHHHH
Confidence 9988889998887543 3344557778888888 678888888877776664
No 308
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.40 E-value=0.0014 Score=76.19 Aligned_cols=99 Identities=22% Similarity=0.323 Sum_probs=62.9
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccchhhh------h--------hHHHHHHHHHHHHhhcC
Q 001707 762 LRPCKGILLFGPPGTGKTLLAKALATEA---GANFISITGSTLTSKWF------G--------DAEKLTKALFSFASKLA 824 (1023)
Q Consensus 762 i~p~~gVLL~GPPGTGKT~LArAIA~el---g~~fi~vs~seL~s~~~------g--------e~e~~I~~lF~~A~k~~ 824 (1023)
+.+..-+||+|+||+|||+|+..+|... +.++++++..+-..... + ..+..+..++..+....
T Consensus 79 i~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~~~ 158 (372)
T cd01121 79 LVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILASIEELK 158 (372)
T ss_pred ccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHHHHHHHcCCCcccEEEEccCcHHHHHHHHHhcC
Confidence 4566779999999999999999998765 45777777654322110 0 01223455666666778
Q ss_pred CeEEEeccchhhhhccCC--CchhHHHHHHHHHHHhhh
Q 001707 825 PVIIFVDEVDSLLGARGG--AFEHEATRRMRNEFMSAW 860 (1023)
Q Consensus 825 PsIIfIDEID~L~~~r~~--~~~~e~~~ril~~LL~~L 860 (1023)
|.+|+||+|..+...... .......+.++..|....
T Consensus 159 ~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~la 196 (372)
T cd01121 159 PDLVIIDSIQTVYSSELTSAPGSVSQVRECTAELMRFA 196 (372)
T ss_pred CcEEEEcchHHhhccccccCCCCHHHHHHHHHHHHHHH
Confidence 999999999998643321 122333444555555444
No 309
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.40 E-value=0.0024 Score=65.72 Aligned_cols=25 Identities=36% Similarity=0.563 Sum_probs=22.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh
Q 001707 765 CKGILLFGPPGTGKTLLAKALATEA 789 (1023)
Q Consensus 765 ~~gVLL~GPPGTGKT~LArAIA~el 789 (1023)
...|+++|+||+|||+++.-++..+
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHH
Confidence 4579999999999999999999877
No 310
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.38 E-value=0.00018 Score=68.64 Aligned_cols=23 Identities=52% Similarity=0.901 Sum_probs=20.9
Q ss_pred EEEEcCCCChHHHHHHHHHHHhC
Q 001707 768 ILLFGPPGTGKTLLAKALATEAG 790 (1023)
Q Consensus 768 VLL~GPPGTGKT~LArAIA~elg 790 (1023)
|.|+||||+|||+||+.||..+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 57999999999999999998874
No 311
>PF14516 AAA_35: AAA-like domain
Probab=97.36 E-value=0.0043 Score=70.90 Aligned_cols=160 Identities=19% Similarity=0.181 Sum_probs=87.7
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccchh-------hhhh------------------------
Q 001707 763 RPCKGILLFGPPGTGKTLLAKALATEA---GANFISITGSTLTSK-------WFGD------------------------ 808 (1023)
Q Consensus 763 ~p~~gVLL~GPPGTGKT~LArAIA~el---g~~fi~vs~seL~s~-------~~ge------------------------ 808 (1023)
.|..-+.|+||..+|||+|...+.+.+ |+..+.+++..+-.. +...
T Consensus 29 ~~G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~~~~~~~~~~~f~~~~~~~i~~~L~l~~~l~~~w~~~~~ 108 (331)
T PF14516_consen 29 QPGSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQLGSAIFSDLEQFLRWFCEEISRQLKLDEKLDEYWDEEIG 108 (331)
T ss_pred cCCCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecCCCcccCCHHHHHHHHHHHHHHHcCCChhHHHHHHHhcC
Confidence 345679999999999999999987766 778888877654221 1000
Q ss_pred HHHHHHHHHHH---HhhcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhcCccC-----CCCceEEEEEecCCC
Q 001707 809 AEKLTKALFSF---ASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRS-----KESQKILILGATNRP 880 (1023)
Q Consensus 809 ~e~~I~~lF~~---A~k~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~-----~~~~~VlVIaTTN~p 880 (1023)
........|.. .....|-||+|||||.++.... +...|+..++.... ....++.+|.+....
T Consensus 109 ~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~----------~~~dF~~~LR~~~~~~~~~~~~~~L~li~~~~t~ 178 (331)
T PF14516_consen 109 SKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQ----------IADDFFGLLRSWYEQRKNNPIWQKLRLILAGSTE 178 (331)
T ss_pred ChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcc----------hHHHHHHHHHHHHHhcccCcccceEEEEEecCcc
Confidence 01111222322 1224689999999999974321 12233333333221 112334444333222
Q ss_pred CCCcHHH-Hh--hcCCceeecCCCHHHHHHHHHHHHhccccCCccCHHHHHHHccCCc
Q 001707 881 FDLDDAV-IR--RLPRRIYVDLPDAENRMKILRIFLAHESLESGFQFNELANATEGYS 935 (1023)
Q Consensus 881 ~~Ld~aL-lr--RFd~~I~V~lPd~eeR~~ILk~~L~~~~l~~dvdl~~LA~~TeGyS 935 (1023)
..+.... .+ .+...|.++.-+.++-..+++.+-.. . ....++.|-..|.|..
T Consensus 179 ~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~--~-~~~~~~~l~~~tgGhP 233 (331)
T PF14516_consen 179 DYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLE--F-SQEQLEQLMDWTGGHP 233 (331)
T ss_pred cccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhcc--C-CHHHHHHHHHHHCCCH
Confidence 2222111 11 22345666767888888887766322 2 2223888888888854
No 312
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.32 E-value=0.0016 Score=69.69 Aligned_cols=79 Identities=28% Similarity=0.408 Sum_probs=51.3
Q ss_pred CCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccchhhhh-----------------------hHHHH
Q 001707 759 GNLLRPCKGILLFGPPGTGKTLLAKALATEA---GANFISITGSTLTSKWFG-----------------------DAEKL 812 (1023)
Q Consensus 759 ~gli~p~~gVLL~GPPGTGKT~LArAIA~el---g~~fi~vs~seL~s~~~g-----------------------e~e~~ 812 (1023)
+| +.+..-++|+||||+|||++|..+|.+. +.+++.++...+...... +....
T Consensus 18 GG-i~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (225)
T PRK09361 18 GG-FERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTEGLSPERFKQIAGEDFEELLSNIIIFEPSSFEEQSEA 96 (225)
T ss_pred CC-CCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHhhChHhHhhCeEEEeCCCHHHHHHH
Confidence 44 4556678999999999999999998755 778888887632111110 01111
Q ss_pred HHHHHHHHhhcCCeEEEeccchhhhhc
Q 001707 813 TKALFSFASKLAPVIIFVDEVDSLLGA 839 (1023)
Q Consensus 813 I~~lF~~A~k~~PsIIfIDEID~L~~~ 839 (1023)
+..+..... ..+.+|+||.+..+...
T Consensus 97 i~~~~~~~~-~~~~lvVIDsi~al~~~ 122 (225)
T PRK09361 97 IRKAEKLAK-ENVGLIVLDSATSLYRL 122 (225)
T ss_pred HHHHHHHHH-hcccEEEEeCcHHHhHH
Confidence 222222222 57899999999988643
No 313
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.32 E-value=0.0002 Score=68.52 Aligned_cols=31 Identities=48% Similarity=0.797 Sum_probs=28.1
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEEEec
Q 001707 768 ILLFGPPGTGKTLLAKALATEAGANFISITG 798 (1023)
Q Consensus 768 VLL~GPPGTGKT~LArAIA~elg~~fi~vs~ 798 (1023)
|+|.||||+|||++|+.+|..+|++++.++.
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~~i~~d~ 32 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFPVISMDD 32 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCEEEEEHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEEecc
Confidence 7899999999999999999999988876653
No 314
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.31 E-value=0.0013 Score=74.92 Aligned_cols=80 Identities=28% Similarity=0.276 Sum_probs=54.8
Q ss_pred CCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccchh----------------hhhhHHHHHHHHHHH
Q 001707 759 GNLLRPCKGILLFGPPGTGKTLLAKALATEA---GANFISITGSTLTSK----------------WFGDAEKLTKALFSF 819 (1023)
Q Consensus 759 ~gli~p~~gVLL~GPPGTGKT~LArAIA~el---g~~fi~vs~seL~s~----------------~~ge~e~~I~~lF~~ 819 (1023)
+| +.+..-++|+||||||||+||..++.+. |.+++.++....... .....+..+..+...
T Consensus 50 GG-lp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~l 128 (321)
T TIGR02012 50 GG-LPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETL 128 (321)
T ss_pred CC-CcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHH
Confidence 44 4566678999999999999988876654 667777765432210 111234445555555
Q ss_pred HhhcCCeEEEeccchhhhhc
Q 001707 820 ASKLAPVIIFVDEVDSLLGA 839 (1023)
Q Consensus 820 A~k~~PsIIfIDEID~L~~~ 839 (1023)
.+...+.+|+||-+-.+.+.
T Consensus 129 i~~~~~~lIVIDSv~al~~~ 148 (321)
T TIGR02012 129 VRSGAVDIIVVDSVAALVPK 148 (321)
T ss_pred hhccCCcEEEEcchhhhccc
Confidence 56678999999999998753
No 315
>KOG2383 consensus Predicted ATPase [General function prediction only]
Probab=97.27 E-value=0.0019 Score=74.31 Aligned_cols=158 Identities=16% Similarity=0.207 Sum_probs=84.5
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHhCCc--EEEEeccccchhh----------------------hhhHHHHHHHHH
Q 001707 762 LRPCKGILLFGPPGTGKTLLAKALATEAGAN--FISITGSTLTSKW----------------------FGDAEKLTKALF 817 (1023)
Q Consensus 762 i~p~~gVLL~GPPGTGKT~LArAIA~elg~~--fi~vs~seL~s~~----------------------~ge~e~~I~~lF 817 (1023)
..+|+||+|||.-|||||+|.-.+...+--. =..+....++... .-.+-..|..-+
T Consensus 111 ~~~PkGlYlYG~VGcGKTmLMDlFy~~~~~i~rkqRvHFh~fM~~VH~r~H~~k~~~~~~~~~~a~~~~~Dpl~~vA~eI 190 (467)
T KOG2383|consen 111 PGPPKGLYLYGSVGCGKTMLMDLFYDALPPIWRKQRVHFHGFMLSVHKRMHELKQEQGAEKPGYAKSWEIDPLPVVADEI 190 (467)
T ss_pred CCCCceEEEecccCcchhHHHHHHhhcCCchhhhhhhhHHHHHHHHHHHHHHHHHhccccCccccccccCCccHHHHHHH
Confidence 4678999999999999999998887544110 0001111111100 001111111111
Q ss_pred HHHhhcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhcCccCCCCceEEEEEecCC-CCCCcHHHHhhcCCcee
Q 001707 818 SFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNR-PFDLDDAVIRRLPRRIY 896 (1023)
Q Consensus 818 ~~A~k~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~~~~~VlVIaTTN~-p~~Ld~aLlrRFd~~I~ 896 (1023)
....++|++||+..- ..+.--+++.|+..|- ...|+++||+|+ |++|...=+.|= ..
T Consensus 191 ----a~ea~lLCFDEfQVT---------DVADAmiL~rLf~~Lf------~~GvVlvATSNR~P~dLYknGlQR~---~F 248 (467)
T KOG2383|consen 191 ----AEEAILLCFDEFQVT---------DVADAMILKRLFEHLF------KNGVVLVATSNRAPEDLYKNGLQRE---NF 248 (467)
T ss_pred ----hhhceeeeechhhhh---------hHHHHHHHHHHHHHHH------hCCeEEEEeCCCChHHHhhcchhhh---hh
Confidence 112479999999753 1222233444444431 236899999987 555665333321 11
Q ss_pred ecCCCHHHHHHHHHHHHhccccCCccCHHHHHHHcc-C--CcHH-HHHHHHHHHH
Q 001707 897 VDLPDAENRMKILRIFLAHESLESGFQFNELANATE-G--YSGS-DLKNLCIAAA 947 (1023)
Q Consensus 897 V~lPd~eeR~~ILk~~L~~~~l~~dvdl~~LA~~Te-G--ySga-DL~~L~~~Aa 947 (1023)
+| -..+|+..+.-..+.+.+|+...+.-.+ + |.+. |+..++++-.
T Consensus 249 ~P------fI~~L~~rc~vi~ldS~vDYR~~~~~~~~~~yf~~~~d~~~~l~~~f 297 (467)
T KOG2383|consen 249 IP------FIALLEERCKVIQLDSGVDYRRKAKSAGENYYFISETDVETVLKEWF 297 (467)
T ss_pred hh------HHHHHHHhheEEecCCccchhhccCCCCceeEecChhhHHHHHHHHH
Confidence 11 1356777777777888889884443222 1 3344 7776665543
No 316
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=97.24 E-value=0.0025 Score=72.28 Aligned_cols=193 Identities=22% Similarity=0.330 Sum_probs=106.2
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccch
Q 001707 727 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEA---GANFISITGSTLTS 803 (1023)
Q Consensus 727 vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~el---g~~fi~vs~seL~s 803 (1023)
..|+.|++.....+.+.+... .|.- .. ..+||.|..||||-.+|++.-..+ ..||+.++|+.+-.
T Consensus 201 ~~F~~~v~~S~~mk~~v~qA~-------k~Am---lD--APLLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~lPe 268 (511)
T COG3283 201 SGFEQIVAVSPKMKHVVEQAQ-------KLAM---LD--APLLITGETGTGKDLLAKACHLASPRHSKPFLALNCASLPE 268 (511)
T ss_pred cchHHHhhccHHHHHHHHHHH-------Hhhc---cC--CCeEEecCCCchHHHHHHHHhhcCcccCCCeeEeecCCCch
Confidence 457777666655554443221 1111 11 249999999999999999876655 67999999987743
Q ss_pred hh-----hhhH--HHHHHHHHHHHhhcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhc-CccCC------CCc
Q 001707 804 KW-----FGDA--EKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWD-GLRSK------ESQ 869 (1023)
Q Consensus 804 ~~-----~ge~--e~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ld-gl~~~------~~~ 869 (1023)
.. +|-. ..--..+|+.|. ..-+|+|||..+. .++...|+..+. |.... -..
T Consensus 269 ~~aEsElFG~apg~~gk~GffE~An---gGTVlLDeIgEmS------------p~lQaKLLRFL~DGtFRRVGee~Ev~v 333 (511)
T COG3283 269 DAAESELFGHAPGDEGKKGFFEQAN---GGTVLLDEIGEMS------------PRLQAKLLRFLNDGTFRRVGEDHEVHV 333 (511)
T ss_pred hHhHHHHhcCCCCCCCccchhhhcc---CCeEEeehhhhcC------------HHHHHHHHHHhcCCceeecCCcceEEE
Confidence 31 1211 122234566553 4789999998774 233344554443 22111 123
Q ss_pred eEEEEEecCCCC-------CCcHHHHhhcCCceeecCCCHHHHHH----HHH----HHHhccccC-CccCHHHHHHHcc-
Q 001707 870 KILILGATNRPF-------DLDDAVIRRLPRRIYVDLPDAENRMK----ILR----IFLAHESLE-SGFQFNELANATE- 932 (1023)
Q Consensus 870 ~VlVIaTTN~p~-------~Ld~aLlrRFd~~I~V~lPd~eeR~~----ILk----~~L~~~~l~-~dvdl~~LA~~Te- 932 (1023)
.|.||+||..+- .+-+.+.-|.+ ++.+..|...+|.. +.+ .+..+..+. +..+-..+...+.
T Consensus 334 dVRVIcatq~nL~~lv~~g~fReDLfyRLN-VLtl~~PpLRer~~di~pL~e~Fv~q~s~elg~p~pkl~~~~~~~L~~y 412 (511)
T COG3283 334 DVRVICATQVNLVELVQKGKFREDLFYRLN-VLTLNLPPLRERPQDIMPLAELFVQQFSDELGVPRPKLAADLLTVLTRY 412 (511)
T ss_pred EEEEEecccccHHHHHhcCchHHHHHHHhh-eeeecCCccccCcccchHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHc
Confidence 688999996541 23344444663 56677777666543 222 233333322 3333333333332
Q ss_pred CC--cHHHHHHHHHHHH
Q 001707 933 GY--SGSDLKNLCIAAA 947 (1023)
Q Consensus 933 Gy--SgaDL~~L~~~Aa 947 (1023)
++ +.++|+|++-+|+
T Consensus 413 ~WpGNVRqL~N~iyRA~ 429 (511)
T COG3283 413 AWPGNVRQLKNAIYRAL 429 (511)
T ss_pred CCCccHHHHHHHHHHHH
Confidence 22 4577776654444
No 317
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.22 E-value=0.0048 Score=78.65 Aligned_cols=153 Identities=16% Similarity=0.187 Sum_probs=81.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccchh---hhh---------------------------hHHHHHH
Q 001707 765 CKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTSK---WFG---------------------------DAEKLTK 814 (1023)
Q Consensus 765 ~~gVLL~GPPGTGKT~LArAIA~elg~~fi~vs~seL~s~---~~g---------------------------e~e~~I~ 814 (1023)
.+-++|+||+|.|||+++...+...+ ++.-++...--+. +.. .....+.
T Consensus 32 ~~~~~v~apaG~GKTtl~~~~~~~~~-~~~w~~l~~~d~~~~~f~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (903)
T PRK04841 32 YRLVLVTSPAGYGKTTLISQWAAGKN-NLGWYSLDESDNQPERFASYLIAALQQATNGHCSKSEALAQKRQYASLSSLFA 110 (903)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhCC-CeEEEecCcccCCHHHHHHHHHHHHHHhcCcccchhhhhhccCCcCCHHHHHH
Confidence 34699999999999999999988776 5555444211000 000 0011222
Q ss_pred HHHHHHhh-cCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhcCccCCCCceEEEEEecCCCCCCcHHHHhhcCC
Q 001707 815 ALFSFASK-LAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPFDLDDAVIRRLPR 893 (1023)
Q Consensus 815 ~lF~~A~k-~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~ 893 (1023)
.++..... ..|.+|+|||++.+. .......+..|+.. . +....+|| ++.....+.-.-++.-+.
T Consensus 111 ~~~~~l~~~~~~~~lvlDD~h~~~--------~~~~~~~l~~l~~~---~---~~~~~lv~-~sR~~~~~~~~~l~~~~~ 175 (903)
T PRK04841 111 QLFIELADWHQPLYLVIDDYHLIT--------NPEIHEAMRFFLRH---Q---PENLTLVV-LSRNLPPLGIANLRVRDQ 175 (903)
T ss_pred HHHHHHhcCCCCEEEEEeCcCcCC--------ChHHHHHHHHHHHh---C---CCCeEEEE-EeCCCCCCchHhHHhcCc
Confidence 33333222 568999999999872 11122233344332 2 22234444 554422232211121122
Q ss_pred ceeec----CCCHHHHHHHHHHHHhccccCCccCHHHHHHHccCCc
Q 001707 894 RIYVD----LPDAENRMKILRIFLAHESLESGFQFNELANATEGYS 935 (1023)
Q Consensus 894 ~I~V~----lPd~eeR~~ILk~~L~~~~l~~dvdl~~LA~~TeGyS 935 (1023)
.+.+. ..+.++-.+++...+... .+..++..|...|+|+.
T Consensus 176 ~~~l~~~~l~f~~~e~~~ll~~~~~~~--~~~~~~~~l~~~t~Gwp 219 (903)
T PRK04841 176 LLEIGSQQLAFDHQEAQQFFDQRLSSP--IEAAESSRLCDDVEGWA 219 (903)
T ss_pred ceecCHHhCCCCHHHHHHHHHhccCCC--CCHHHHHHHHHHhCChH
Confidence 33444 557888888887654321 23445677888888854
No 318
>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair]
Probab=97.20 E-value=0.0031 Score=74.10 Aligned_cols=213 Identities=23% Similarity=0.237 Sum_probs=117.5
Q ss_pred cccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe-ccccchhhhhhH
Q 001707 731 DIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISIT-GSTLTSKWFGDA 809 (1023)
Q Consensus 731 DIgGle~vk~~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~elg~~fi~vs-~seL~s~~~ge~ 809 (1023)
+|.|.+++|+.|.-++.--..+. ...+-.++..-+|+|.|.||+-|+-|.+.|.+-.-..++.-. ++. -+|-+
T Consensus 343 EIyGheDVKKaLLLlLVGgvd~~--~~dGMKIRGdINicLmGDPGVAKSQLLkyi~rlapRgvYTTGrGSS----GVGLT 416 (721)
T KOG0482|consen 343 EIYGHEDVKKALLLLLVGGVDKS--PGDGMKIRGDINICLMGDPGVAKSQLLKYISRLAPRGVYTTGRGSS----GVGLT 416 (721)
T ss_pred hhccchHHHHHHHHHhhCCCCCC--CCCCceeecceeEEecCCCchhHHHHHHHHHhcCcccceecCCCCC----ccccc
Confidence 57799999999977664322211 112322556678999999999999999999886633332211 000 01111
Q ss_pred HHHHHHHHH-H------H-hhcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhcCccCCCCceEEEEEecCCCC
Q 001707 810 EKLTKALFS-F------A-SKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPF 881 (1023)
Q Consensus 810 e~~I~~lF~-~------A-~k~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~~~~~VlVIaTTN~p~ 881 (1023)
...++.-.. + | --....|.+|||+|.+....... -++++.+. ++-..--|+...-+.+.-|+|++|+..
T Consensus 417 AAVmkDpvTgEM~LEGGALVLAD~GICCIDEfDKM~e~DRtA-IHEVMEQQ--TISIaKAGI~TtLNAR~sILaAANPay 493 (721)
T KOG0482|consen 417 AAVMKDPVTGEMVLEGGALVLADGGICCIDEFDKMDESDRTA-IHEVMEQQ--TISIAKAGINTTLNARTSILAAANPAY 493 (721)
T ss_pred hhhhcCCCCCeeEeccceEEEccCceEeehhhhhhhhhhhHH-HHHHHHhh--hhhhhhhccccchhhhHHhhhhcCccc
Confidence 111100000 0 0 01134789999999996432211 12222211 111111244444456788999998654
Q ss_pred C-------------CcHHHHhhcCCcee-ecCCCHHHHHHHHHHHHhc--cccCCc-----cCHH------HHHHHccCC
Q 001707 882 D-------------LDDAVIRRLPRRIY-VDLPDAENRMKILRIFLAH--ESLESG-----FQFN------ELANATEGY 934 (1023)
Q Consensus 882 ~-------------Ld~aLlrRFd~~I~-V~lPd~eeR~~ILk~~L~~--~~l~~d-----vdl~------~LA~~TeGy 934 (1023)
. |+.+|++||+..+- ...|+.+.-..+.+++.-- +.-.+. ++.. .+|+...-+
T Consensus 494 GRYnprrs~e~NI~LPaALLSRFDll~Li~D~pdrd~D~~LA~HiTyVH~H~~qp~~~fepl~~~~mR~yI~~ak~~~P~ 573 (721)
T KOG0482|consen 494 GRYNPRRSPEQNINLPAALLSRFDLLWLIQDRPDRDNDLRLAQHITYVHQHEEQPPLDFEPLDPNLMRRYISLAKRKNPV 573 (721)
T ss_pred cccCcccChhHhcCCcHHHHHhhhhhhhhccCCcccchHHHHHHhHhhhccCCCCCccCCCCCHHHHHHHHHHHhhcCCC
Confidence 2 88999999997654 4578887777776665431 111122 3322 334555566
Q ss_pred cHHHHHHHHHHHHHHHHH
Q 001707 935 SGSDLKNLCIAAAYRPVQ 952 (1023)
Q Consensus 935 SgaDL~~L~~~Aa~~Air 952 (1023)
.+.+|...+..|.-..-+
T Consensus 574 vp~~l~dyi~~AYv~~Rr 591 (721)
T KOG0482|consen 574 VPEALADYITGAYVELRR 591 (721)
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 677777777665544433
No 319
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.19 E-value=0.0032 Score=79.51 Aligned_cols=42 Identities=7% Similarity=0.090 Sum_probs=34.4
Q ss_pred hhhcccccCCCcchHHHHhccccEEEEcCCChHHHHHHHHHHHH
Q 001707 563 RLTEGLKATKRSDDNEIYNLFTNVLSIHPPKEEDLLRTFNKQVE 606 (1023)
Q Consensus 563 ~LvIGmTNR~d~iDeaL~rrFe~~ieI~LPdee~Rl~Il~Iht~ 606 (1023)
+++|+.+|--. |++||+.||+ .|.|..+.++.-++|.+.|+.
T Consensus 466 v~~i~TaN~~~-i~~aLl~R~~-ii~~~~~t~eek~~Ia~~~L~ 507 (784)
T PRK10787 466 VMFVATSNSMN-IPAPLLDRME-VIRLSGYTEDEKLNIAKRHLL 507 (784)
T ss_pred eEEEEcCCCCC-CCHHHhccee-eeecCCCCHHHHHHHHHHhhh
Confidence 45666666654 9999999997 588888889999999999984
No 320
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.18 E-value=0.0027 Score=70.12 Aligned_cols=36 Identities=22% Similarity=0.350 Sum_probs=33.0
Q ss_pred CCCceeeccCCChhHHHHHHHHHHHhhcCCcEEEeecC
Q 001707 220 SSGRILLRSVPGTELYRERLIRALARELQVPLLVLDSS 257 (1023)
Q Consensus 220 ~~~~iLL~~~~gsE~y~e~L~kAlA~~~~a~ll~~ds~ 257 (1023)
.++.|||.|||| .++++||++||+.+|.+++.+..+
T Consensus 20 ~g~~vLL~G~~G--tGKT~lA~~la~~lg~~~~~i~~~ 55 (262)
T TIGR02640 20 SGYPVHLRGPAG--TGKTTLAMHVARKRDRPVMLINGD 55 (262)
T ss_pred cCCeEEEEcCCC--CCHHHHHHHHHHHhCCCEEEEeCC
Confidence 467899999999 899999999999999999999874
No 321
>PRK08118 topology modulation protein; Reviewed
Probab=97.14 E-value=0.0008 Score=69.43 Aligned_cols=32 Identities=28% Similarity=0.493 Sum_probs=29.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEec
Q 001707 767 GILLFGPPGTGKTLLAKALATEAGANFISITG 798 (1023)
Q Consensus 767 gVLL~GPPGTGKT~LArAIA~elg~~fi~vs~ 798 (1023)
.|+|.||||+|||+||+.|+..++.+++.++.
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~ 34 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDA 34 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecch
Confidence 59999999999999999999999999988764
No 322
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=97.13 E-value=0.00087 Score=70.55 Aligned_cols=122 Identities=16% Similarity=0.153 Sum_probs=57.6
Q ss_pred EEEEcCCCChHHHHHHHH-HHHh---CCcEEEEeccccchhhhhh----H-HH------------HHHHHHHHHhhcCCe
Q 001707 768 ILLFGPPGTGKTLLAKAL-ATEA---GANFISITGSTLTSKWFGD----A-EK------------LTKALFSFASKLAPV 826 (1023)
Q Consensus 768 VLL~GPPGTGKT~LArAI-A~el---g~~fi~vs~seL~s~~~ge----~-e~------------~I~~lF~~A~k~~Ps 826 (1023)
.|++|.||+|||+.|-.. .... |.+++. +...|.-..... . .. ..............+
T Consensus 3 ~~~~G~pGsGKS~~av~~~i~~~l~~gr~V~t-ni~gL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (193)
T PF05707_consen 3 YLITGKPGSGKSYYAVSYVIIPALKKGRPVYT-NIPGLNIEKIQPVLGYDIPTRLIDLSDPDFEEDWDDPDDWRKLPKGS 81 (193)
T ss_dssp EEEE--TTSSHHHHHHHHHHH-GGGS---EEE---TTB-S--EEEE--TTT-S-----S--SSSEEGGGHHHHTTSGTT-
T ss_pred EEEEcCCCCcHhHHHHHHHHHHHHhCCCEEEE-ccCCcchhhhhhhccccccccccccccccchhhhhhhhhhcccCCCc
Confidence 689999999999988666 4433 666555 433222111110 0 00 001111111111578
Q ss_pred EEEeccchhhhhccCCCchhHHHHHHHHHHHhhhcCccCCCCceEEEEEecCCCCCCcHHHHhhcCCceeecC
Q 001707 827 IIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPFDLDDAVIRRLPRRIYVDL 899 (1023)
Q Consensus 827 IIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~V~l 899 (1023)
||+|||+..+++.+.... ......+ .++... ....+-||.+|..+..+|..+++.....+++..
T Consensus 82 liviDEa~~~~~~r~~~~--~~~~~~~-~~l~~h------Rh~g~diiliTQ~~~~id~~ir~lve~~~~~~k 145 (193)
T PF05707_consen 82 LIVIDEAQNFFPSRSWKG--KKVPEII-EFLAQH------RHYGWDIILITQSPSQIDKFIRDLVEYHYHCRK 145 (193)
T ss_dssp EEEETTGGGTSB---T-T------HHH-HGGGGC------CCTT-EEEEEES-GGGB-HHHHCCEEEEEEEEE
T ss_pred EEEEECChhhcCCCcccc--ccchHHH-HHHHHh------CcCCcEEEEEeCCHHHHhHHHHHHHheEEEEEe
Confidence 999999999998775421 1112223 333322 223567888999999999999886665555543
No 323
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=97.13 E-value=0.0043 Score=67.37 Aligned_cols=40 Identities=28% Similarity=0.443 Sum_probs=30.7
Q ss_pred CCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecc
Q 001707 759 GNLLRPCKGILLFGPPGTGKTLLAKALATEA---GANFISITGS 799 (1023)
Q Consensus 759 ~gli~p~~gVLL~GPPGTGKT~LArAIA~el---g~~fi~vs~s 799 (1023)
+| +.+...+||+||||+|||++|..++.+. |-+.+.++..
T Consensus 16 GG-~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~e 58 (237)
T TIGR03877 16 GG-IPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALE 58 (237)
T ss_pred CC-CcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEee
Confidence 55 5677889999999999999998876543 6666666543
No 324
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.13 E-value=0.0022 Score=73.11 Aligned_cols=80 Identities=26% Similarity=0.266 Sum_probs=54.2
Q ss_pred CCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccchh----------------hhhhHHHHHHHHHHH
Q 001707 759 GNLLRPCKGILLFGPPGTGKTLLAKALATEA---GANFISITGSTLTSK----------------WFGDAEKLTKALFSF 819 (1023)
Q Consensus 759 ~gli~p~~gVLL~GPPGTGKT~LArAIA~el---g~~fi~vs~seL~s~----------------~~ge~e~~I~~lF~~ 819 (1023)
+| +.+.+-++|+||||+|||+||-.++.+. |..++.++...-... .....+..+..+-..
T Consensus 50 GG-lp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~i~~~l 128 (325)
T cd00983 50 GG-YPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQALEIADSL 128 (325)
T ss_pred CC-ccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHHHHHHcCCCHHHheecCCCCHHHHHHHHHHH
Confidence 44 4555678999999999999999887554 667777776432110 011234444444445
Q ss_pred HhhcCCeEEEeccchhhhhc
Q 001707 820 ASKLAPVIIFVDEVDSLLGA 839 (1023)
Q Consensus 820 A~k~~PsIIfIDEID~L~~~ 839 (1023)
++...+.+|+||-+-.+.+.
T Consensus 129 i~s~~~~lIVIDSvaal~~~ 148 (325)
T cd00983 129 VRSGAVDLIVVDSVAALVPK 148 (325)
T ss_pred HhccCCCEEEEcchHhhccc
Confidence 56678999999999998753
No 325
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.12 E-value=0.00048 Score=69.69 Aligned_cols=34 Identities=32% Similarity=0.526 Sum_probs=30.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001707 764 PCKGILLFGPPGTGKTLLAKALATEAGANFISIT 797 (1023)
Q Consensus 764 p~~gVLL~GPPGTGKT~LArAIA~elg~~fi~vs 797 (1023)
++..|+|+|+||||||++|+++|..++++|+..+
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~d 36 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDTD 36 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 4568999999999999999999999999888643
No 326
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.11 E-value=0.0015 Score=66.50 Aligned_cols=59 Identities=27% Similarity=0.318 Sum_probs=36.8
Q ss_pred ccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc---EEEEecccc
Q 001707 732 IGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGAN---FISITGSTL 801 (1023)
Q Consensus 732 IgGle~vk~~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~elg~~---fi~vs~seL 801 (1023)
+.|.++..+.|...+.. . . ...++.++|+|++|+|||+|+++++..+..+ ++.+.+...
T Consensus 2 fvgR~~e~~~l~~~l~~-~-------~---~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~~ 63 (185)
T PF13191_consen 2 FVGREEEIERLRDLLDA-A-------Q---SGSPRNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCDDS 63 (185)
T ss_dssp -TT-HHHHHHHHHTTGG-T-------S---S-----EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEETT
T ss_pred CCCHHHHHHHHHHHHHH-H-------H---cCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEecc
Confidence 46788888888876631 0 1 2334789999999999999999998877333 777666554
No 327
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.09 E-value=0.0034 Score=68.14 Aligned_cols=76 Identities=24% Similarity=0.348 Sum_probs=49.2
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccchhhh-------------------------------h
Q 001707 762 LRPCKGILLFGPPGTGKTLLAKALATEA---GANFISITGSTLTSKWF-------------------------------G 807 (1023)
Q Consensus 762 i~p~~gVLL~GPPGTGKT~LArAIA~el---g~~fi~vs~seL~s~~~-------------------------------g 807 (1023)
+.+...++|.||||||||++|..++... |...+.++..+-..... .
T Consensus 21 i~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~ 100 (230)
T PRK08533 21 IPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQLTTTEFIKQMMSLGYDINKKLISGKLLYIPVYPLLSGNS 100 (230)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhCCchHHHhhcCcEEEEEecccccChH
Confidence 4555679999999999999986665544 56666665432111000 0
Q ss_pred hHHHHHHHHHHHHhhcCCeEEEeccchhhh
Q 001707 808 DAEKLTKALFSFASKLAPVIIFVDEVDSLL 837 (1023)
Q Consensus 808 e~e~~I~~lF~~A~k~~PsIIfIDEID~L~ 837 (1023)
+.+..+..+...+....|.+++||++-.+.
T Consensus 101 ~~~~~l~~il~~~~~~~~~~lVIDe~t~~l 130 (230)
T PRK08533 101 EKRKFLKKLMNTRRFYEKDVIIIDSLSSLI 130 (230)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEECccHHh
Confidence 113444555555555679999999998765
No 328
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.09 E-value=0.0042 Score=66.04 Aligned_cols=77 Identities=30% Similarity=0.453 Sum_probs=49.4
Q ss_pred CCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccchhhh-----------------------hhHHHH
Q 001707 759 GNLLRPCKGILLFGPPGTGKTLLAKALATEA---GANFISITGSTLTSKWF-----------------------GDAEKL 812 (1023)
Q Consensus 759 ~gli~p~~gVLL~GPPGTGKT~LArAIA~el---g~~fi~vs~seL~s~~~-----------------------ge~e~~ 812 (1023)
+| +.+..-++|+|+||+|||+++..+|.+. +.+++.++......... .+....
T Consensus 14 GG-i~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (218)
T cd01394 14 GG-VERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTEGLSSERFRQIAGDRPERAASSIIVFEPMDFNEQGRA 92 (218)
T ss_pred CC-ccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHhHChHhhhcCEEEEeCCCHHHHHHH
Confidence 45 4556679999999999999999999775 56777776543211100 011122
Q ss_pred HHHHHHHHhhcCCeEEEeccchhhh
Q 001707 813 TKALFSFASKLAPVIIFVDEVDSLL 837 (1023)
Q Consensus 813 I~~lF~~A~k~~PsIIfIDEID~L~ 837 (1023)
+..+..... ..+.+|+||-+-.+.
T Consensus 93 ~~~~~~~~~-~~~~lvvIDsi~~l~ 116 (218)
T cd01394 93 IQETETFAD-EKVDLVVVDSATALY 116 (218)
T ss_pred HHHHHHHHh-cCCcEEEEechHHhh
Confidence 223333332 248999999999885
No 329
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.08 E-value=0.0016 Score=83.88 Aligned_cols=136 Identities=25% Similarity=0.306 Sum_probs=86.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccch--hhhh-----h--HHHH-HHHHHHHHhhcCCeEEEeccch
Q 001707 765 CKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTS--KWFG-----D--AEKL-TKALFSFASKLAPVIIFVDEVD 834 (1023)
Q Consensus 765 ~~gVLL~GPPGTGKT~LArAIA~elg~~fi~vs~seL~s--~~~g-----e--~e~~-I~~lF~~A~k~~PsIIfIDEID 834 (1023)
.+++||.|.||+|||.|..|+|+..|-.++.++.++-.. +.+| + .+-. ...-|-.|-+ ...-|++||+.
T Consensus 1543 ~kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~amr-~G~WVlLDEiN 1621 (4600)
T COG5271 1543 GKPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHAMR-DGGWVLLDEIN 1621 (4600)
T ss_pred CCceeecCCCCccHHHHHHHHHHHhcCceEEeeccccchHHHHhCCCCCcccCceeEecccHHHHHhh-cCCEEEeehhh
Confidence 356999999999999999999999999999999876421 1122 1 1111 1222333333 34678899997
Q ss_pred hhhhccCCCchhHHHHHHHHHHHhhhcCc---cC-------CCCceEEEEEecCCCCC------CcHHHHhhcCCceeec
Q 001707 835 SLLGARGGAFEHEATRRMRNEFMSAWDGL---RS-------KESQKILILGATNRPFD------LDDAVIRRLPRRIYVD 898 (1023)
Q Consensus 835 ~L~~~r~~~~~~e~~~ril~~LL~~Ldgl---~~-------~~~~~VlVIaTTN~p~~------Ld~aLlrRFd~~I~V~ 898 (1023)
.-. ..++.-|-..+|-- .- .-..+..|+||-|+.+. |+..++.||. ++.+.
T Consensus 1622 LaS------------QSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggGRKgLPkSF~nRFs-vV~~d 1688 (4600)
T COG5271 1622 LAS------------QSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGGRKGLPKSFLNRFS-VVKMD 1688 (4600)
T ss_pred hhH------------HHHHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhcCCCcccCCHHHhhhhh-eEEec
Confidence 532 22333333333311 10 12346778888876543 9999999995 66777
Q ss_pred CCCHHHHHHHHHHHHh
Q 001707 899 LPDAENRMKILRIFLA 914 (1023)
Q Consensus 899 lPd~eeR~~ILk~~L~ 914 (1023)
..+.++...|......
T Consensus 1689 ~lt~dDi~~Ia~~~yp 1704 (4600)
T COG5271 1689 GLTTDDITHIANKMYP 1704 (4600)
T ss_pred ccccchHHHHHHhhCC
Confidence 7777666666665543
No 330
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.07 E-value=0.002 Score=68.22 Aligned_cols=98 Identities=23% Similarity=0.339 Sum_probs=51.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccchhhhhh----HHHHHHHHHHHHh---------hcCCeEEE
Q 001707 766 KGILLFGPPGTGKTLLAKALATEA---GANFISITGSTLTSKWFGD----AEKLTKALFSFAS---------KLAPVIIF 829 (1023)
Q Consensus 766 ~gVLL~GPPGTGKT~LArAIA~el---g~~fi~vs~seL~s~~~ge----~e~~I~~lF~~A~---------k~~PsIIf 829 (1023)
+.++|.||||||||+++++++..+ +..++.+.+..-...-... ....+..++.... .....+|+
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~~Aa~~L~~~~~~~a~Ti~~~l~~~~~~~~~~~~~~~~~~vli 98 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTNKAAKELREKTGIEAQTIHSFLYRIPNGDDEGRPELPKKDVLI 98 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHHTS-EEEHHHHTTEECCEECCSSCC-TSTSEEE
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcHHHHHHHHHhhCcchhhHHHHHhcCCcccccccccCCcccEEE
Confidence 358889999999999999987655 6677766554321111100 0111222221111 12347999
Q ss_pred eccchhhhhccCCCchhHHHHHHHHHHHhhhcCccCCCCceEEEEEecCC
Q 001707 830 VDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNR 879 (1023)
Q Consensus 830 IDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~~~~~VlVIaTTN~ 879 (1023)
|||+..+. ...+..++..... .+.+++++|-.+.
T Consensus 99 VDEasmv~------------~~~~~~ll~~~~~----~~~klilvGD~~Q 132 (196)
T PF13604_consen 99 VDEASMVD------------SRQLARLLRLAKK----SGAKLILVGDPNQ 132 (196)
T ss_dssp ESSGGG-B------------HHHHHHHHHHS-T-----T-EEEEEE-TTS
T ss_pred EecccccC------------HHHHHHHHHHHHh----cCCEEEEECCcch
Confidence 99998763 2223444444322 2457888887664
No 331
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=97.02 E-value=0.003 Score=75.94 Aligned_cols=199 Identities=18% Similarity=0.128 Sum_probs=111.5
Q ss_pred ccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe------------
Q 001707 730 DDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISIT------------ 797 (1023)
Q Consensus 730 dDIgGle~vk~~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~elg~~fi~vs------------ 797 (1023)
..|.|.+.+|.-+.-.+.--...... .+--++.-.+|+|.|.||+||+-+.++++.-+-..++...
T Consensus 345 PsIyGhe~VK~GilL~LfGGv~K~a~--eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fsPR~vYtsGkaSSaAGLTaaV 422 (764)
T KOG0480|consen 345 PSIYGHELVKAGILLSLFGGVHKSAG--EGTSLRGDINVCIVGDPGTGKSQFLKAVCAFSPRSVYTSGKASSAAGLTAAV 422 (764)
T ss_pred ccccchHHHHhhHHHHHhCCccccCC--CCccccCCceEEEeCCCCccHHHHHHHHhccCCcceEecCcccccccceEEE
Confidence 35778999998876555332222111 1111344467999999999999999999887643333211
Q ss_pred -ccccchhhhhhHHHHHHHHHHHHhhcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhc-CccCCCCceEEEEE
Q 001707 798 -GSTLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWD-GLRSKESQKILILG 875 (1023)
Q Consensus 798 -~seL~s~~~ge~e~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ld-gl~~~~~~~VlVIa 875 (1023)
-.+..++|.-+....+ -....|-.|||+|.+.-..+. .....+-++-+..-+ |+...-+.+.-|||
T Consensus 423 vkD~esgdf~iEAGALm--------LADnGICCIDEFDKMd~~dqv----AihEAMEQQtISIaKAGv~aTLnARtSIlA 490 (764)
T KOG0480|consen 423 VKDEESGDFTIEAGALM--------LADNGICCIDEFDKMDVKDQV----AIHEAMEQQTISIAKAGVVATLNARTSILA 490 (764)
T ss_pred EecCCCCceeeecCcEE--------EccCceEEechhcccChHhHH----HHHHHHHhheehheecceEEeecchhhhhh
Confidence 1111112211111110 123579999999998532211 111111122111111 22222344667899
Q ss_pred ecCCCCC-------------CcHHHHhhcCCcee-ecCCCHHHHHHHHHHHHhccccCCccCHHHHHHHccCCcHHHHHH
Q 001707 876 ATNRPFD-------------LDDAVIRRLPRRIY-VDLPDAENRMKILRIFLAHESLESGFQFNELANATEGYSGSDLKN 941 (1023)
Q Consensus 876 TTN~p~~-------------Ld~aLlrRFd~~I~-V~lPd~eeR~~ILk~~L~~~~l~~dvdl~~LA~~TeGySgaDL~~ 941 (1023)
|+|+... ++.++++||+..+. +.-|++..-..|-++++..+....+ -......|+-.+++.
T Consensus 491 AANPv~GhYdR~ktl~eNi~msApimSRFDL~FiLlD~~nE~~D~~ia~hIld~h~~i~~-----~~~~~~~~~~e~vrk 565 (764)
T KOG0480|consen 491 AANPVGGHYDRKKTLRENINMSAPIMSRFDLFFILLDDCNEVVDYAIARHILDLHRGIDD-----ATERVCVYTLEQVRK 565 (764)
T ss_pred hcCCcCCccccccchhhhcCCCchhhhhhcEEEEEecCCchHHHHHHHHHHHHHhccccc-----cccccccccHHHHHH
Confidence 9987643 77899999986543 5779988888888888765432211 112224677777777
Q ss_pred HHHHHH
Q 001707 942 LCIAAA 947 (1023)
Q Consensus 942 L~~~Aa 947 (1023)
.+.-|.
T Consensus 566 Yi~yAR 571 (764)
T KOG0480|consen 566 YIRYAR 571 (764)
T ss_pred HHHHHH
Confidence 665543
No 332
>PRK07261 topology modulation protein; Provisional
Probab=97.00 E-value=0.0014 Score=67.75 Aligned_cols=33 Identities=24% Similarity=0.423 Sum_probs=29.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEecc
Q 001707 767 GILLFGPPGTGKTLLAKALATEAGANFISITGS 799 (1023)
Q Consensus 767 gVLL~GPPGTGKT~LArAIA~elg~~fi~vs~s 799 (1023)
.|+|.|+||+|||+||+.|+..++.+++.++.-
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~ 34 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTL 34 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCE
Confidence 489999999999999999999999998877643
No 333
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.99 E-value=0.0046 Score=66.74 Aligned_cols=78 Identities=24% Similarity=0.356 Sum_probs=51.3
Q ss_pred CCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccchhhh-----------------------------
Q 001707 759 GNLLRPCKGILLFGPPGTGKTLLAKALATEA---GANFISITGSTLTSKWF----------------------------- 806 (1023)
Q Consensus 759 ~gli~p~~gVLL~GPPGTGKT~LArAIA~el---g~~fi~vs~seL~s~~~----------------------------- 806 (1023)
+| +.+...++++|+||+|||+|+.+++.+. |.+++.++..+-...+.
T Consensus 20 gG-~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~~~~~~~~~~~~g~~~~~~~~~g~l~i~~~~~~~~ 98 (234)
T PRK06067 20 GG-IPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENTSKSYLKQMESVKIDISDFFLWGYLRIFPLNTEGF 98 (234)
T ss_pred CC-CcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHHHHHCCCChhHHHhCCCceEEecccccc
Confidence 45 5566789999999999999999997653 66776666533211100
Q ss_pred ----hhHHHHHHHHHHHHhhcCCeEEEeccchhhh
Q 001707 807 ----GDAEKLTKALFSFASKLAPVIIFVDEVDSLL 837 (1023)
Q Consensus 807 ----ge~e~~I~~lF~~A~k~~PsIIfIDEID~L~ 837 (1023)
...+..+..+-.......|.+|+||++..+.
T Consensus 99 ~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~ 133 (234)
T PRK06067 99 EWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFA 133 (234)
T ss_pred ccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHH
Confidence 0112334444444455688999999998764
No 334
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.98 E-value=0.017 Score=68.02 Aligned_cols=112 Identities=19% Similarity=0.219 Sum_probs=58.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEeccccchh-------hh---h---hHHHHHHHHHHHHhhcCCeE
Q 001707 765 CKGILLFGPPGTGKTLLAKALATEA----GANFISITGSTLTSK-------WF---G---DAEKLTKALFSFASKLAPVI 827 (1023)
Q Consensus 765 ~~gVLL~GPPGTGKT~LArAIA~el----g~~fi~vs~seL~s~-------~~---g---e~e~~I~~lF~~A~k~~PsI 827 (1023)
+..++|.||+|+|||+++..+|... |..+..+++...... |. + .....+..+...+......+
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~ 302 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSEL 302 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCE
Confidence 4568899999999999999999754 445555554432111 10 0 00111223333333345578
Q ss_pred EEeccchhhhhccCCCchhHHHHHHHHHHHhhhcCccC-CCCceEEEEEecCCCCCCcHH
Q 001707 828 IFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRS-KESQKILILGATNRPFDLDDA 886 (1023)
Q Consensus 828 IfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~-~~~~~VlVIaTTN~p~~Ld~a 886 (1023)
|+||=..... + .. ..+.++...++.... .+...++|+.+|.....+...
T Consensus 303 VLIDTaGr~~--r----d~----~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~ 352 (432)
T PRK12724 303 ILIDTAGYSH--R----NL----EQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTV 352 (432)
T ss_pred EEEeCCCCCc--c----CH----HHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHH
Confidence 8887543221 0 01 122333333332211 123567888887776666443
No 335
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.98 E-value=0.086 Score=62.42 Aligned_cols=37 Identities=27% Similarity=0.266 Sum_probs=30.0
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccc
Q 001707 764 PCKGILLFGPPGTGKTLLAKALATEA---GANFISITGST 800 (1023)
Q Consensus 764 p~~gVLL~GPPGTGKT~LArAIA~el---g~~fi~vs~se 800 (1023)
++.-|+|.|++|+||||++..+|..+ |..+..+++..
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~ 138 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADT 138 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcc
Confidence 45678999999999999999999877 66666666643
No 336
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=96.98 E-value=0.0042 Score=78.35 Aligned_cols=139 Identities=26% Similarity=0.324 Sum_probs=97.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEEeccccch--hhhhhHHHHHHHHHHHHh-hcCCeEEEecc
Q 001707 766 KGILLFGPPGTGKTLLAKALATEA----------GANFISITGSTLTS--KWFGDAEKLTKALFSFAS-KLAPVIIFVDE 832 (1023)
Q Consensus 766 ~gVLL~GPPGTGKT~LArAIA~el----------g~~fi~vs~seL~s--~~~ge~e~~I~~lF~~A~-k~~PsIIfIDE 832 (1023)
++-+|.|.||+|||.++.-+|+.. +..++.++...+.. ++.|+.+..++.+..++. .....||||||
T Consensus 209 ~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~g~l~aGa~~rge~E~rlk~l~k~v~~~~~gvILfige 288 (898)
T KOG1051|consen 209 NNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDFGSLVAGAKRRGEFEERLKELLKEVESGGGGVILFLGE 288 (898)
T ss_pred CCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEhhhcccCcccchHHHHHHHHHHHHHhcCCCcEEEEecc
Confidence 567899999999999999999876 24567777765543 466788999999999887 44678999999
Q ss_pred chhhhhccCCCchhHHHHHHHHHHHhhhcCccCCCCceEEEEEecCCC-----CCCcHHHHhhcCCceeecCCCHHHHHH
Q 001707 833 VDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRP-----FDLDDAVIRRLPRRIYVDLPDAENRMK 907 (1023)
Q Consensus 833 ID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~~~~~VlVIaTTN~p-----~~Ld~aLlrRFd~~I~V~lPd~eeR~~ 907 (1023)
++.+.+...+.. .....+-|.-.+ ....+-+||||... -.-+|++-+||+ .+.|+.|+.++-..
T Consensus 289 lh~lvg~g~~~~----~~d~~nlLkp~L------~rg~l~~IGatT~e~Y~k~iekdPalErrw~-l~~v~~pS~~~~~~ 357 (898)
T KOG1051|consen 289 LHWLVGSGSNYG----AIDAANLLKPLL------ARGGLWCIGATTLETYRKCIEKDPALERRWQ-LVLVPIPSVENLSL 357 (898)
T ss_pred eeeeecCCCcch----HHHHHHhhHHHH------hcCCeEEEecccHHHHHHHHhhCcchhhCcc-eeEeccCcccchhh
Confidence 999986654411 111222222222 12238899988522 236789999995 57789999887666
Q ss_pred HHHHHHhc
Q 001707 908 ILRIFLAH 915 (1023)
Q Consensus 908 ILk~~L~~ 915 (1023)
||...-..
T Consensus 358 iL~~l~~~ 365 (898)
T KOG1051|consen 358 ILPGLSER 365 (898)
T ss_pred hhhhhhhh
Confidence 77665443
No 337
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.96 E-value=0.014 Score=70.02 Aligned_cols=90 Identities=12% Similarity=0.162 Sum_probs=59.4
Q ss_pred CCeEEEEcCchhhhhhccCCccHHHHHHHHHHHHhcCCCCEEEEecccCCCCCccccccccccccccccccCCCCcchhh
Q 001707 485 QPLIVYFPDSSLWLSRAVPRCNRKEFVRKVEEMFDQLSGPVVLICGQNKNETGPKEKEKFTMILPNFGRLAKLPLPLQRL 564 (1023)
Q Consensus 485 ~p~Iiff~di~~~~~~s~~~~~~~~~~s~l~~~~~~~~g~v~vI~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 564 (1023)
..-|||+||++.+-.. ..+.|+..|+..++.+++|++++
T Consensus 117 ~~kVvIIDE~h~Lt~~---------a~~~LLk~LE~p~~~vv~Ilatt-------------------------------- 155 (472)
T PRK14962 117 KYKVYIIDEVHMLTKE---------AFNALLKTLEEPPSHVVFVLATT-------------------------------- 155 (472)
T ss_pred CeEEEEEEChHHhHHH---------HHHHHHHHHHhCCCcEEEEEEeC--------------------------------
Confidence 3469999999986322 23456677777888888874443
Q ss_pred hcccccCCCcchHHHHhccccEEEEcCCChHHHHHHHHHHHHHHhhhhhhhhhHHHHHH
Q 001707 565 TEGLKATKRSDDNEIYNLFTNVLSIHPPKEEDLLRTFNKQVEEDRRIVIYRSNLNELHK 623 (1023)
Q Consensus 565 vIGmTNR~d~iDeaL~rrFe~~ieI~LPdee~Rl~Il~Iht~~~~~~~~~~~~v~~l~~ 623 (1023)
.+..+.++|..|+. .++|.+|+.+....+++.-..+ ......++-++.|+.
T Consensus 156 ------n~~kl~~~L~SR~~-vv~f~~l~~~el~~~L~~i~~~-egi~i~~eal~~Ia~ 206 (472)
T PRK14962 156 ------NLEKVPPTIISRCQ-VIEFRNISDELIIKRLQEVAEA-EGIEIDREALSFIAK 206 (472)
T ss_pred ------ChHhhhHHHhcCcE-EEEECCccHHHHHHHHHHHHHH-cCCCCCHHHHHHHHH
Confidence 23457788999985 7999999998877777655322 222334444555544
No 338
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=96.96 E-value=0.0095 Score=68.42 Aligned_cols=156 Identities=16% Similarity=0.103 Sum_probs=86.0
Q ss_pred ccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccchh-------
Q 001707 732 IGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTSK------- 804 (1023)
Q Consensus 732 IgGle~vk~~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~elg~~fi~vs~seL~s~------- 804 (1023)
+.+.+.++..|..++.. .. ..-|..|.|||..|||||++.+++.+.++.+.+.+++-+..+-
T Consensus 8 v~~Re~qi~~L~~Llg~---------~~--~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~~vw~n~~ecft~~~lle~I 76 (438)
T KOG2543|consen 8 VPCRESQIRRLKSLLGN---------NS--CTIPSIVHIYGHSGTGKTYLVRQLLRKLNLENVWLNCVECFTYAILLEKI 76 (438)
T ss_pred ccchHHHHHHHHHHhCC---------CC--cccceeEEEeccCCCchhHHHHHHHhhcCCcceeeehHHhccHHHHHHHH
Confidence 44567777777776621 11 1344578999999999999999999999998888876543211
Q ss_pred --------hhh----hHHHHH---HHHHHH---Hhhc-CCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhcCccC
Q 001707 805 --------WFG----DAEKLT---KALFSF---ASKL-APVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRS 865 (1023)
Q Consensus 805 --------~~g----e~e~~I---~~lF~~---A~k~-~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~ 865 (1023)
.-| ....++ ..+|.. +.+. +...|++|++|.+-.. ...+++.|+.+-.-+.
T Consensus 77 L~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~---------~a~ll~~l~~L~el~~- 146 (438)
T KOG2543|consen 77 LNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDM---------DAILLQCLFRLYELLN- 146 (438)
T ss_pred HHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhcc---------chHHHHHHHHHHHHhC-
Confidence 111 111111 122222 2222 4578999999998421 2233444443332221
Q ss_pred CCCceEEEEEecCCCCCCcHHHH--h-hcCCceeecCCCHHHHHHHHHHH
Q 001707 866 KESQKILILGATNRPFDLDDAVI--R-RLPRRIYVDLPDAENRMKILRIF 912 (1023)
Q Consensus 866 ~~~~~VlVIaTTN~p~~Ld~aLl--r-RFd~~I~V~lPd~eeR~~ILk~~ 912 (1023)
.+ .+.+|...-.... .-.. . --...+++|.|+.++-.+|+..-
T Consensus 147 ~~--~i~iils~~~~e~--~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 147 EP--TIVIILSAPSCEK--QYLINTGTLEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred CC--ceEEEEeccccHH--HhhcccCCCCceEEecCCCCHHHHHHHHhcC
Confidence 11 2222222211111 0111 1 11246788999999988888654
No 339
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=96.95 E-value=0.0021 Score=71.25 Aligned_cols=94 Identities=21% Similarity=0.262 Sum_probs=60.4
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC---CcEEEEe-ccccc
Q 001707 727 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAG---ANFISIT-GSTLT 802 (1023)
Q Consensus 727 vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~elg---~~fi~vs-~seL~ 802 (1023)
.+++++|-.....+.|++++.. +...++|.||+|+|||++++++..+.. ..++.+. ..++.
T Consensus 57 ~~l~~lg~~~~~~~~l~~~~~~---------------~~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~ 121 (264)
T cd01129 57 LDLEKLGLKPENLEIFRKLLEK---------------PHGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQ 121 (264)
T ss_pred CCHHHcCCCHHHHHHHHHHHhc---------------CCCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceec
Confidence 4677887777777777766522 223589999999999999999987763 3344442 12211
Q ss_pred hh-----hh-hhHHHHHHHHHHHHhhcCCeEEEeccchh
Q 001707 803 SK-----WF-GDAEKLTKALFSFASKLAPVIIFVDEVDS 835 (1023)
Q Consensus 803 s~-----~~-ge~e~~I~~lF~~A~k~~PsIIfIDEID~ 835 (1023)
-. .+ .........+...+.+..|.+|+|+||..
T Consensus 122 ~~~~~q~~v~~~~~~~~~~~l~~~lR~~PD~i~vgEiR~ 160 (264)
T cd01129 122 IPGINQVQVNEKAGLTFARGLRAILRQDPDIIMVGEIRD 160 (264)
T ss_pred CCCceEEEeCCcCCcCHHHHHHHHhccCCCEEEeccCCC
Confidence 10 00 11112345556666788999999999954
No 340
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.91 E-value=0.002 Score=63.26 Aligned_cols=28 Identities=61% Similarity=0.924 Sum_probs=24.4
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 001707 768 ILLFGPPGTGKTLLAKALATEAGANFIS 795 (1023)
Q Consensus 768 VLL~GPPGTGKT~LArAIA~elg~~fi~ 795 (1023)
|++.||||+|||++|+.++..++..++.
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~~~~i~ 29 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLGAVVIS 29 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHSTEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCEEEe
Confidence 7899999999999999999999944433
No 341
>PRK10867 signal recognition particle protein; Provisional
Probab=96.89 E-value=0.09 Score=62.43 Aligned_cols=74 Identities=23% Similarity=0.259 Sum_probs=48.2
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEeccccchhh--------------------hhhHHHHHHHHHH
Q 001707 763 RPCKGILLFGPPGTGKTLLAKALATEA----GANFISITGSTLTSKW--------------------FGDAEKLTKALFS 818 (1023)
Q Consensus 763 ~p~~gVLL~GPPGTGKT~LArAIA~el----g~~fi~vs~seL~s~~--------------------~ge~e~~I~~lF~ 818 (1023)
.++.-|++.||+|+|||+++..+|..+ |..+..+++....... .............
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a~~ 177 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAALE 177 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHH
Confidence 346778999999999999888888755 5666666654332110 0123344445555
Q ss_pred HHhhcCCeEEEeccchhh
Q 001707 819 FASKLAPVIIFVDEVDSL 836 (1023)
Q Consensus 819 ~A~k~~PsIIfIDEID~L 836 (1023)
.++.....+|+||=..++
T Consensus 178 ~a~~~~~DvVIIDTaGrl 195 (433)
T PRK10867 178 EAKENGYDVVIVDTAGRL 195 (433)
T ss_pred HHHhcCCCEEEEeCCCCc
Confidence 666666789998877654
No 342
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=96.88 E-value=0.0043 Score=72.18 Aligned_cols=73 Identities=22% Similarity=0.364 Sum_probs=45.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCC-----c-EEEEeccc---------------cchhhhhhHHHHHH---HHHHHHh
Q 001707 766 KGILLFGPPGTGKTLLAKALATEAGA-----N-FISITGST---------------LTSKWFGDAEKLTK---ALFSFAS 821 (1023)
Q Consensus 766 ~gVLL~GPPGTGKT~LArAIA~elg~-----~-fi~vs~se---------------L~s~~~ge~e~~I~---~lF~~A~ 821 (1023)
...||+||||+|||+|++.|++.... . ++.+.... +.+.+-..+...++ .++..|+
T Consensus 170 QR~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie~Ae 249 (416)
T PRK09376 170 QRGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIEKAK 249 (416)
T ss_pred ceEEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHHHHH
Confidence 45899999999999999999987743 2 22222221 12222223333333 3333443
Q ss_pred h----cCCeEEEeccchhhhh
Q 001707 822 K----LAPVIIFVDEVDSLLG 838 (1023)
Q Consensus 822 k----~~PsIIfIDEID~L~~ 838 (1023)
. ....+||||||.++..
T Consensus 250 ~~~e~G~dVlL~iDsItR~ar 270 (416)
T PRK09376 250 RLVEHGKDVVILLDSITRLAR 270 (416)
T ss_pred HHHHcCCCEEEEEEChHHHHH
Confidence 2 3568999999999974
No 343
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=96.87 E-value=0.0085 Score=64.16 Aligned_cols=98 Identities=23% Similarity=0.385 Sum_probs=62.2
Q ss_pred CCCCCCCceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEeccccchh--------------h---------------
Q 001707 759 GNLLRPCKGILLFGPPGTGKTLLAKALATEA----GANFISITGSTLTSK--------------W--------------- 805 (1023)
Q Consensus 759 ~gli~p~~gVLL~GPPGTGKT~LArAIA~el----g~~fi~vs~seL~s~--------------~--------------- 805 (1023)
+| +.+...+||.||||+|||.|+..++... |-+++.++..+-... +
T Consensus 14 GG-ip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~~~s~g~d~~~~~~~g~l~~~d~~~~~ 92 (226)
T PF06745_consen 14 GG-IPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIENMKSFGWDLEEYEDSGKLKIIDAFPER 92 (226)
T ss_dssp TS-EETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHHHHTTTS-HHHHHHTTSEEEEESSGGG
T ss_pred CC-CCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHHHHHcCCcHHHHhhcCCEEEEeccccc
Confidence 45 5666789999999999999999876543 777777765322100 0
Q ss_pred ----hhhHHHHHHHHHHHHhhcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhc
Q 001707 806 ----FGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWD 861 (1023)
Q Consensus 806 ----~ge~e~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ld 861 (1023)
.......+..+........+.+++||.+..+. ... .....+..+..+...+.
T Consensus 93 ~~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls~l~-~~~---~~~~~r~~l~~l~~~l~ 148 (226)
T PF06745_consen 93 IGWSPNDLEELLSKIREAIEELKPDRVVIDSLSALL-LYD---DPEELRRFLRALIKFLK 148 (226)
T ss_dssp ST-TSCCHHHHHHHHHHHHHHHTSSEEEEETHHHHT-TSS---SGGGHHHHHHHHHHHHH
T ss_pred ccccccCHHHHHHHHHHHHHhcCCCEEEEECHHHHh-hcC---CHHHHHHHHHHHHHHHH
Confidence 01234555666666667788999999999982 221 23344555666666653
No 344
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.84 E-value=0.0081 Score=63.99 Aligned_cols=41 Identities=34% Similarity=0.477 Sum_probs=31.4
Q ss_pred CCCCCCCceEEEEcCCCChHHHHHHHHHHHh---C------CcEEEEeccc
Q 001707 759 GNLLRPCKGILLFGPPGTGKTLLAKALATEA---G------ANFISITGST 800 (1023)
Q Consensus 759 ~gli~p~~gVLL~GPPGTGKT~LArAIA~el---g------~~fi~vs~se 800 (1023)
+| +.+..-+.|+||||+|||+|+..+|... + ..++.++...
T Consensus 14 GG-~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~ 63 (226)
T cd01393 14 GG-IPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEG 63 (226)
T ss_pred CC-CcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCC
Confidence 44 4566678999999999999999998764 3 5667776654
No 345
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.83 E-value=0.0013 Score=79.24 Aligned_cols=64 Identities=17% Similarity=0.233 Sum_probs=47.3
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-CCcEEEEec
Q 001707 727 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEA-GANFISITG 798 (1023)
Q Consensus 727 vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~el-g~~fi~vs~ 798 (1023)
.-|+|+.|++++++.+.+++...... + -...+.++|.||||+|||+||++||+.+ .++++.+..
T Consensus 73 ~fF~d~yGlee~ieriv~~l~~Aa~g------l--~~~~~IL~LvGPpG~GKSsLa~~la~~le~~~~Y~~kg 137 (644)
T PRK15455 73 PAFEEFYGMEEAIEQIVSYFRHAAQG------L--EEKKQILYLLGPVGGGKSSLAERLKSLMERVPIYVLKA 137 (644)
T ss_pred cchhcccCcHHHHHHHHHHHHHHHHh------c--CCCCceEEEecCCCCCchHHHHHHHHHHHhCcceeecC
Confidence 35889999999999998877332111 1 2234578999999999999999999987 456665543
No 346
>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair]
Probab=96.81 E-value=0.013 Score=70.56 Aligned_cols=166 Identities=20% Similarity=0.290 Sum_probs=91.3
Q ss_pred cccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe---------cc--
Q 001707 731 DIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISIT---------GS-- 799 (1023)
Q Consensus 731 DIgGle~vk~~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~elg~~fi~vs---------~s-- 799 (1023)
.|.|..++|..+.-.+.--..+.. ...--++.--+|||+|.|||||+-+.+.+++-....++.-. +.
T Consensus 450 sIyGh~~VK~AvAlaLfGGv~kn~--~~khkvRGDinvLL~GDPGTaKSQFLKY~eK~s~RAV~tTGqGASavGLTa~v~ 527 (854)
T KOG0477|consen 450 SIYGHEDVKRAVALALFGGVPKNP--GGKHKVRGDINVLLLGDPGTAKSQFLKYAEKTSPRAVFTTGQGASAVGLTAYVR 527 (854)
T ss_pred hhhchHHHHHHHHHHHhcCCccCC--CCCceeccceeEEEecCCCccHHHHHHHHHhcCcceeEeccCCccccceeEEEe
Confidence 467999999998776643222111 00011233457999999999999999999987755444321 11
Q ss_pred --ccchhhhhhHHHHHHHHHHHHhhcCCeEEEeccchhhhhccCCCchhHHHHHHH-----HHHHhhhcCccCCCCceEE
Q 001707 800 --TLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMR-----NEFMSAWDGLRSKESQKIL 872 (1023)
Q Consensus 800 --eL~s~~~ge~e~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~e~~~ril-----~~LL~~Ldgl~~~~~~~Vl 872 (1023)
-+...|.-+.... ..| ...|.+|||+|.+......+. ++++.+.. .-+.+.| ..+..
T Consensus 528 KdPvtrEWTLEaGAL-----VLA---DkGvClIDEFDKMndqDRtSI-HEAMEQQSISISKAGIVtsL-------qArct 591 (854)
T KOG0477|consen 528 KDPVTREWTLEAGAL-----VLA---DKGVCLIDEFDKMNDQDRTSI-HEAMEQQSISISKAGIVTSL-------QARCT 591 (854)
T ss_pred eCCccceeeeccCeE-----EEc---cCceEEeehhhhhcccccchH-HHHHHhcchhhhhhhHHHHH-------Hhhhh
Confidence 0111222111111 111 347889999999965433222 33332111 1122222 34577
Q ss_pred EEEecCCCC-------------CCcHHHHhhcCCceeecC---CCHHHHHH--HHHHHHh
Q 001707 873 ILGATNRPF-------------DLDDAVIRRLPRRIYVDL---PDAENRMK--ILRIFLA 914 (1023)
Q Consensus 873 VIaTTN~p~-------------~Ld~aLlrRFd~~I~V~l---Pd~eeR~~--ILk~~L~ 914 (1023)
||||+|+.. .|.+.+++||+....|.- |-.+++.. ++..+.+
T Consensus 592 vIAAanPigGRY~~s~tFaqNV~ltePIlSRFDiLcVvkD~vd~~~De~lA~fVV~Sh~r 651 (854)
T KOG0477|consen 592 VIAAANPIGGRYNPSLTFAQNVDLTEPILSRFDILCVVKDTVDPVQDEKLAKFVVGSHVR 651 (854)
T ss_pred hheecCCCCCccCCccchhhccccccchhhhcceeeeeecccCchhHHHHHHHHHHhHhh
Confidence 999998731 366789999986655542 44444433 3444444
No 347
>PRK09354 recA recombinase A; Provisional
Probab=96.81 E-value=0.007 Score=69.62 Aligned_cols=79 Identities=25% Similarity=0.270 Sum_probs=52.7
Q ss_pred CCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccchh----------------hhhhHHHHHHHHHHH
Q 001707 759 GNLLRPCKGILLFGPPGTGKTLLAKALATEA---GANFISITGSTLTSK----------------WFGDAEKLTKALFSF 819 (1023)
Q Consensus 759 ~gli~p~~gVLL~GPPGTGKT~LArAIA~el---g~~fi~vs~seL~s~----------------~~ge~e~~I~~lF~~ 819 (1023)
+| +...+-++|+||||||||+||-.++... |...+.++...-... .....+..+..+-..
T Consensus 55 GG-ip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~~~a~~lGvdld~lli~qp~~~Eq~l~i~~~l 133 (349)
T PRK09354 55 GG-LPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQALEIADTL 133 (349)
T ss_pred CC-CcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHH
Confidence 44 4555678999999999999999877544 667777766542110 011233344444444
Q ss_pred HhhcCCeEEEeccchhhhh
Q 001707 820 ASKLAPVIIFVDEVDSLLG 838 (1023)
Q Consensus 820 A~k~~PsIIfIDEID~L~~ 838 (1023)
.+...+.+|+||-+-.+.+
T Consensus 134 i~s~~~~lIVIDSvaaL~~ 152 (349)
T PRK09354 134 VRSGAVDLIVVDSVAALVP 152 (349)
T ss_pred hhcCCCCEEEEeChhhhcc
Confidence 5566789999999999875
No 348
>PHA02774 E1; Provisional
Probab=96.81 E-value=0.0084 Score=72.58 Aligned_cols=33 Identities=27% Similarity=0.581 Sum_probs=27.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEEE-Ee
Q 001707 765 CKGILLFGPPGTGKTLLAKALATEAGANFIS-IT 797 (1023)
Q Consensus 765 ~~gVLL~GPPGTGKT~LArAIA~elg~~fi~-vs 797 (1023)
...++|+||||||||++|.+|++.++..++. ++
T Consensus 434 knciv~~GPP~TGKS~fa~sL~~~L~G~vi~fvN 467 (613)
T PHA02774 434 KNCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVN 467 (613)
T ss_pred ccEEEEECCCCCCHHHHHHHHHHHhCCCEEEEEE
Confidence 3579999999999999999999999655544 44
No 349
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.80 E-value=0.0083 Score=64.30 Aligned_cols=79 Identities=22% Similarity=0.247 Sum_probs=49.7
Q ss_pred CCCCCCCceEEEEcCCCChHHHHHHHHHHHh---------CCcEEEEeccccch-hh-----------------------
Q 001707 759 GNLLRPCKGILLFGPPGTGKTLLAKALATEA---------GANFISITGSTLTS-KW----------------------- 805 (1023)
Q Consensus 759 ~gli~p~~gVLL~GPPGTGKT~LArAIA~el---------g~~fi~vs~seL~s-~~----------------------- 805 (1023)
+| +.+..-+.|+||||+|||+|+..++... +..++.++...-.. ..
T Consensus 14 GG-i~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~ 92 (235)
T cd01123 14 GG-IETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQIAERFGLDPEEVLDNIYVAR 92 (235)
T ss_pred CC-CCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHHHHHHhccChHhHhcCEEEEe
Confidence 44 5566678999999999999999998553 25677777654211 00
Q ss_pred ---hhhHHHHHHHHHHHHhhc-CCeEEEeccchhhhh
Q 001707 806 ---FGDAEKLTKALFSFASKL-APVIIFVDEVDSLLG 838 (1023)
Q Consensus 806 ---~ge~e~~I~~lF~~A~k~-~PsIIfIDEID~L~~ 838 (1023)
..+....+..+-...... .+.+|+||-+..+..
T Consensus 93 ~~~~~~l~~~l~~l~~~l~~~~~~~liVIDSis~~~~ 129 (235)
T cd01123 93 AYNSDHQLQLLEELEAILIESSRIKLVIVDSVTALFR 129 (235)
T ss_pred cCCHHHHHHHHHHHHHHHhhcCCeeEEEEeCcHHHHH
Confidence 001112222232333445 789999999998753
No 350
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=96.80 E-value=0.0096 Score=61.88 Aligned_cols=69 Identities=19% Similarity=0.231 Sum_probs=46.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccchhhhhhHHH--------------------HHHHHHHHHhhcCCe
Q 001707 767 GILLFGPPGTGKTLLAKALATEAGANFISITGSTLTSKWFGDAEK--------------------LTKALFSFASKLAPV 826 (1023)
Q Consensus 767 gVLL~GPPGTGKT~LArAIA~elg~~fi~vs~seL~s~~~ge~e~--------------------~I~~lF~~A~k~~Ps 826 (1023)
.+|+.|+||+|||++|..++..++.+++.+........ +..+ .+..++... ..++.
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~~~~~---e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~-~~~~~ 78 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGLQVLYIATAQPFDD---EMAARIAHHRQRRPAHWQTVEEPLDLAELLRAD-AAPGR 78 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCCCcEeCcCCCCChH---HHHHHHHHHHhcCCCCCeEecccccHHHHHHhh-cCCCC
Confidence 48999999999999999999998877777665443211 1111 122322211 23467
Q ss_pred EEEeccchhhhhc
Q 001707 827 IIFVDEVDSLLGA 839 (1023)
Q Consensus 827 IIfIDEID~L~~~ 839 (1023)
+|+||-+..|...
T Consensus 79 ~VlID~Lt~~~~n 91 (170)
T PRK05800 79 CVLVDCLTTWVTN 91 (170)
T ss_pred EEEehhHHHHHHH
Confidence 8999999999654
No 351
>PRK13947 shikimate kinase; Provisional
Probab=96.78 E-value=0.0012 Score=67.20 Aligned_cols=31 Identities=42% Similarity=0.553 Sum_probs=28.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001707 767 GILLFGPPGTGKTLLAKALATEAGANFISIT 797 (1023)
Q Consensus 767 gVLL~GPPGTGKT~LArAIA~elg~~fi~vs 797 (1023)
+|+|.|+||||||++|+.+|..++++|+..+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d 33 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTD 33 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECc
Confidence 6999999999999999999999999997754
No 352
>PRK04296 thymidine kinase; Provisional
Probab=96.78 E-value=0.0091 Score=62.86 Aligned_cols=69 Identities=17% Similarity=0.231 Sum_probs=40.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecc----c----cchhhhhh-HH----HHHHHHHHHH--hhcCCeEE
Q 001707 767 GILLFGPPGTGKTLLAKALATEA---GANFISITGS----T----LTSKWFGD-AE----KLTKALFSFA--SKLAPVII 828 (1023)
Q Consensus 767 gVLL~GPPGTGKT~LArAIA~el---g~~fi~vs~s----e----L~s~~~ge-~e----~~I~~lF~~A--~k~~PsII 828 (1023)
-+|++||+|+|||+++..++..+ +..++.+... . +.+. .|- .. .....++..+ ....+.+|
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~~d~~~~~~~i~~~-lg~~~~~~~~~~~~~~~~~~~~~~~~~dvv 82 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPAIDDRYGEGKVVSR-IGLSREAIPVSSDTDIFELIEEEGEKIDCV 82 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEeccccccccCCcEecC-CCCcccceEeCChHHHHHHHHhhCCCCCEE
Confidence 47899999999999998888776 5555555331 1 1111 110 00 1122333332 23457899
Q ss_pred Eeccchhh
Q 001707 829 FVDEVDSL 836 (1023)
Q Consensus 829 fIDEID~L 836 (1023)
+|||++.+
T Consensus 83 iIDEaq~l 90 (190)
T PRK04296 83 LIDEAQFL 90 (190)
T ss_pred EEEccccC
Confidence 99999765
No 353
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=96.78 E-value=0.012 Score=65.12 Aligned_cols=40 Identities=25% Similarity=0.386 Sum_probs=30.6
Q ss_pred CCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecc
Q 001707 759 GNLLRPCKGILLFGPPGTGKTLLAKALATEA---GANFISITGS 799 (1023)
Q Consensus 759 ~gli~p~~gVLL~GPPGTGKT~LArAIA~el---g~~fi~vs~s 799 (1023)
+| +.+...+||+||||||||++|..+|... |-+++.++..
T Consensus 31 GG-ip~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~E 73 (259)
T TIGR03878 31 GG-IPAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVE 73 (259)
T ss_pred CC-eECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEec
Confidence 44 5666789999999999999999987653 5566666543
No 354
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=96.77 E-value=0.011 Score=70.43 Aligned_cols=79 Identities=22% Similarity=0.318 Sum_probs=54.2
Q ss_pred CCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccchhhh------hh--------HHHHHHHHHHHHh
Q 001707 759 GNLLRPCKGILLFGPPGTGKTLLAKALATEA---GANFISITGSTLTSKWF------GD--------AEKLTKALFSFAS 821 (1023)
Q Consensus 759 ~gli~p~~gVLL~GPPGTGKT~LArAIA~el---g~~fi~vs~seL~s~~~------ge--------~e~~I~~lF~~A~ 821 (1023)
+| +.+..-+||+|+||+|||+|+..+|... +.++++++..+-..... +- .+..+..+...+.
T Consensus 89 GG-i~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi~~ra~rlg~~~~~l~~~~e~~~~~I~~~i~ 167 (454)
T TIGR00416 89 GG-IVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQIKMRAIRLGLPEPNLYVLSETNWEQICANIE 167 (454)
T ss_pred CC-ccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHHHHHHHHcCCChHHeEEcCCCCHHHHHHHHH
Confidence 44 5666779999999999999999998765 45777777654322111 00 0122345555566
Q ss_pred hcCCeEEEeccchhhhh
Q 001707 822 KLAPVIIFVDEVDSLLG 838 (1023)
Q Consensus 822 k~~PsIIfIDEID~L~~ 838 (1023)
...|.+|+||.|..+..
T Consensus 168 ~~~~~~vVIDSIq~l~~ 184 (454)
T TIGR00416 168 EENPQACVIDSIQTLYS 184 (454)
T ss_pred hcCCcEEEEecchhhcc
Confidence 77899999999999864
No 355
>PRK10536 hypothetical protein; Provisional
Probab=96.76 E-value=0.0077 Score=66.59 Aligned_cols=22 Identities=41% Similarity=0.496 Sum_probs=20.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHH
Q 001707 767 GILLFGPPGTGKTLLAKALATE 788 (1023)
Q Consensus 767 gVLL~GPPGTGKT~LArAIA~e 788 (1023)
-|++.||+|||||+||.++|.+
T Consensus 76 lV~i~G~aGTGKT~La~a~a~~ 97 (262)
T PRK10536 76 LIFATGEAGCGKTWISAAKAAE 97 (262)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5999999999999999999985
No 356
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=96.76 E-value=0.0084 Score=59.53 Aligned_cols=52 Identities=15% Similarity=0.192 Sum_probs=37.9
Q ss_pred cccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 001707 731 DIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEA 789 (1023)
Q Consensus 731 DIgGle~vk~~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~el 789 (1023)
.|.|+.-+.+.+..++...+..+. -..|.-+-|+|++|||||++++.||+.+
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~~-------p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANPN-------PRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCCC-------CCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 456788788888777766554431 1223445699999999999999999986
No 357
>PRK13342 recombination factor protein RarA; Reviewed
Probab=96.76 E-value=0.019 Score=67.59 Aligned_cols=75 Identities=15% Similarity=0.291 Sum_probs=51.6
Q ss_pred CCeEEEEcCchhhhhhccCCccHHHHHHHHHHHHhcCCCCEEEEecccCCCCCccccccccccccccccccCCCCcchhh
Q 001707 485 QPLIVYFPDSSLWLSRAVPRCNRKEFVRKVEEMFDQLSGPVVLICGQNKNETGPKEKEKFTMILPNFGRLAKLPLPLQRL 564 (1023)
Q Consensus 485 ~p~Iiff~di~~~~~~s~~~~~~~~~~s~l~~~~~~~~g~v~vI~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 564 (1023)
+..|||+|||+.+-.. . ...|+..|+. |.+++|++++...
T Consensus 92 ~~~vL~IDEi~~l~~~-----~----q~~LL~~le~--~~iilI~att~n~----------------------------- 131 (413)
T PRK13342 92 RRTILFIDEIHRFNKA-----Q----QDALLPHVED--GTITLIGATTENP----------------------------- 131 (413)
T ss_pred CceEEEEechhhhCHH-----H----HHHHHHHhhc--CcEEEEEeCCCCh-----------------------------
Confidence 4579999999986432 1 1234444443 7888886654211
Q ss_pred hcccccCCCcchHHHHhccccEEEEcCCChHHHHHHHHHHHHH
Q 001707 565 TEGLKATKRSDDNEIYNLFTNVLSIHPPKEEDLLRTFNKQVEE 607 (1023)
Q Consensus 565 vIGmTNR~d~iDeaL~rrFe~~ieI~LPdee~Rl~Il~Iht~~ 607 (1023)
...++++|++|+ ..+.|++|+++...++++..+.+
T Consensus 132 -------~~~l~~aL~SR~-~~~~~~~ls~e~i~~lL~~~l~~ 166 (413)
T PRK13342 132 -------SFEVNPALLSRA-QVFELKPLSEEDIEQLLKRALED 166 (413)
T ss_pred -------hhhccHHHhccc-eeeEeCCCCHHHHHHHHHHHHHH
Confidence 134778999999 78999999999888888776543
No 358
>PHA02624 large T antigen; Provisional
Probab=96.75 E-value=0.0068 Score=73.62 Aligned_cols=122 Identities=16% Similarity=0.195 Sum_probs=67.5
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccchhhhhhHHHHHHHHHHHHhhcCCeEEEeccchhhhhccCC
Q 001707 763 RPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGG 842 (1023)
Q Consensus 763 ~p~~gVLL~GPPGTGKT~LArAIA~elg~~fi~vs~seL~s~~~ge~e~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~ 842 (1023)
...+.+||+||||||||+++.+|++.++...+.++++.-.+. |...-....-+.+||++-.-......
T Consensus 429 PKk~~il~~GPpnTGKTtf~~sLl~~L~G~vlsVNsPt~ks~------------FwL~pl~D~~~~l~dD~t~~~~~~~~ 496 (647)
T PHA02624 429 PKRRYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPPDKLN------------FELGCAIDQFMVVFEDVKGQPADNKD 496 (647)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcCCeEEEeeCCcchhH------------HHhhhhhhceEEEeeecccccccccc
Confidence 344679999999999999999999999777777876653222 22211122357777777432211100
Q ss_pred -CchhHHHHHHHHHHHhhhcCc-cC----CCCceE-----EEEEecCCCCCCcHHHHhhcCCceeecC
Q 001707 843 -AFEHEATRRMRNEFMSAWDGL-RS----KESQKI-----LILGATNRPFDLDDAVIRRLPRRIYVDL 899 (1023)
Q Consensus 843 -~~~~e~~~ril~~LL~~Ldgl-~~----~~~~~V-----lVIaTTN~p~~Ld~aLlrRFd~~I~V~l 899 (1023)
+.+.... -+..|-..|||- .. +...++ -+|.|||. ..++..+.-||..++.|..
T Consensus 497 Lp~G~~~d--Nl~~lRn~LDG~V~v~ld~KH~n~~q~~~PPlliT~Ne-y~iP~T~~~Rf~~~~~F~~ 561 (647)
T PHA02624 497 LPSGQGMN--NLDNLRDYLDGSVPVNLEKKHLNKRSQIFPPGIVTMNE-YLIPQTVKARFAKVLDFKP 561 (647)
T ss_pred CCcccccc--hhhHHHhhcCCCCccccchhccCchhccCCCeEEeecC-cccchhHHHHHHHhccccc
Confidence 0000000 011233344543 10 000011 14557775 4688888889988888754
No 359
>PRK03839 putative kinase; Provisional
Probab=96.73 E-value=0.0014 Score=67.78 Aligned_cols=31 Identities=39% Similarity=0.659 Sum_probs=28.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001707 767 GILLFGPPGTGKTLLAKALATEAGANFISIT 797 (1023)
Q Consensus 767 gVLL~GPPGTGKT~LArAIA~elg~~fi~vs 797 (1023)
.|+|.|+||+|||++++.+|+.++++|+.++
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~d 32 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDLT 32 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 4899999999999999999999999997754
No 360
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=96.71 E-value=0.0015 Score=65.02 Aligned_cols=31 Identities=35% Similarity=0.626 Sum_probs=28.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001707 767 GILLFGPPGTGKTLLAKALATEAGANFISIT 797 (1023)
Q Consensus 767 gVLL~GPPGTGKT~LArAIA~elg~~fi~vs 797 (1023)
+|+|+|+||+|||++|+.+|..++++++..+
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~~~~~~d 31 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDLD 31 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCEEEch
Confidence 4899999999999999999999999988654
No 361
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.70 E-value=0.02 Score=67.02 Aligned_cols=160 Identities=16% Similarity=0.178 Sum_probs=83.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh-------CCcEEEEeccccchh-------h---------hhhHHHHHHHHHHHHh
Q 001707 765 CKGILLFGPPGTGKTLLAKALATEA-------GANFISITGSTLTSK-------W---------FGDAEKLTKALFSFAS 821 (1023)
Q Consensus 765 ~~gVLL~GPPGTGKT~LArAIA~el-------g~~fi~vs~seL~s~-------~---------~ge~e~~I~~lF~~A~ 821 (1023)
+..|+|+||+|+|||+++..+|..+ +..+..+++...... | .......+...+...
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~- 252 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS- 252 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh-
Confidence 4579999999999999999999765 234444443332110 0 001112222222222
Q ss_pred hcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhcCccCCCCceEEEEEecCCCCCCcHHHHhhcC----Cceee
Q 001707 822 KLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPFDLDDAVIRRLP----RRIYV 897 (1023)
Q Consensus 822 k~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd----~~I~V 897 (1023)
....+|+||.+.+... ... .+.++...++.... +...++|+.+|.....+... ..+|. ..+-+
T Consensus 253 -~~~DlVLIDTaGr~~~------~~~----~l~el~~~l~~~~~-~~e~~LVlsat~~~~~~~~~-~~~~~~~~~~~~I~ 319 (388)
T PRK12723 253 -KDFDLVLVDTIGKSPK------DFM----KLAEMKELLNACGR-DAEFHLAVSSTTKTSDVKEI-FHQFSPFSYKTVIF 319 (388)
T ss_pred -CCCCEEEEcCCCCCcc------CHH----HHHHHHHHHHhcCC-CCeEEEEEcCCCCHHHHHHH-HHHhcCCCCCEEEE
Confidence 3458999999987521 111 13344444443321 23578899888887777643 34442 23445
Q ss_pred cCCCHHHHHH-HHHHHHh-ccc---------cC---CccCHHHHHHHccCCcHHH
Q 001707 898 DLPDAENRMK-ILRIFLA-HES---------LE---SGFQFNELANATEGYSGSD 938 (1023)
Q Consensus 898 ~lPd~eeR~~-ILk~~L~-~~~---------l~---~dvdl~~LA~~TeGySgaD 938 (1023)
.-.|...+.- ++..... +.+ +. ...+-..+++..-||+-++
T Consensus 320 TKlDet~~~G~~l~~~~~~~~Pi~yit~Gq~vPeDl~~~~~~~~~~~l~g~~~~~ 374 (388)
T PRK12723 320 TKLDETTCVGNLISLIYEMRKEVSYVTDGQIVPHNISIAEPLTFIKKINGYRISD 374 (388)
T ss_pred EeccCCCcchHHHHHHHHHCCCEEEEeCCCCChhhhhhCCHHHHHHHhcCCCccc
Confidence 5555544433 3332222 111 11 1234556777777776644
No 362
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.70 E-value=0.0045 Score=72.42 Aligned_cols=75 Identities=19% Similarity=0.294 Sum_probs=59.4
Q ss_pred ccccccccccc---------cchhhHHHHHHhhhccccCccchhhccccccCCCCceeeccCCChhHHHHHHHHHHHhhc
Q 001707 177 INISWDTFPYY---------INENTKSLLVECVGSHLKHKKFTATFGARLTSSSGRILLRSVPGTELYRERLIRALAREL 247 (1023)
Q Consensus 177 ~~vsf~~fpyy---------lse~tk~~L~~~~~~hl~~~~~~~~~~~~l~~~~~~iLL~~~~gsE~y~e~L~kAlA~~~ 247 (1023)
-.-.|..||+= +.+..|.-+++=..-.++.+++ |.+.=-+=-++-||+|||| .++-.++=|+|+|+
T Consensus 185 ~~~~W~~v~f~HpstF~TlaMd~~~K~~I~~Dl~~F~k~k~~---YkrvGkawKRGYLLYGPPG--TGKSS~IaAmAn~L 259 (457)
T KOG0743|consen 185 KGGEWRSVGFPHPSTFETLAMDPDLKERIIDDLDDFIKGKDF---YKRVGKAWKRGYLLYGPPG--TGKSSFIAAMANYL 259 (457)
T ss_pred cCCcceecCCCCCCCccccccChhHHHHHHHHHHHHHhcchH---HHhcCcchhccceeeCCCC--CCHHHHHHHHHhhc
Confidence 35567777663 5788899999999999999998 4444445567899999999 89999999999998
Q ss_pred CCcEEEeec
Q 001707 248 QVPLLVLDS 256 (1023)
Q Consensus 248 ~a~ll~~ds 256 (1023)
+-..-.|.-
T Consensus 260 ~ydIydLeL 268 (457)
T KOG0743|consen 260 NYDIYDLEL 268 (457)
T ss_pred CCceEEeee
Confidence 866555544
No 363
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.66 E-value=0.0029 Score=66.92 Aligned_cols=68 Identities=21% Similarity=0.307 Sum_probs=42.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCC----cEEEEecc-ccch---------hhhhhHHHHHHHHHHHHhhcCCeEEEecc
Q 001707 767 GILLFGPPGTGKTLLAKALATEAGA----NFISITGS-TLTS---------KWFGDAEKLTKALFSFASKLAPVIIFVDE 832 (1023)
Q Consensus 767 gVLL~GPPGTGKT~LArAIA~elg~----~fi~vs~s-eL~s---------~~~ge~e~~I~~lF~~A~k~~PsIIfIDE 832 (1023)
-++|.||+|+|||+++++++..+.. .++.+..+ ++.. ...+.........+..+.+..|.+|++||
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~~~~~~~i~q~~vg~~~~~~~~~i~~aLr~~pd~ii~gE 82 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHESKRSLINQREVGLDTLSFENALKAALRQDPDVILVGE 82 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccccccCccceeeecccCCCccCHHHHHHHHhcCCcCEEEEcC
Confidence 3899999999999999999988742 22322211 1110 00111112234455566677899999999
Q ss_pred ch
Q 001707 833 VD 834 (1023)
Q Consensus 833 ID 834 (1023)
+-
T Consensus 83 ir 84 (198)
T cd01131 83 MR 84 (198)
T ss_pred CC
Confidence 83
No 364
>PRK13948 shikimate kinase; Provisional
Probab=96.66 E-value=0.0031 Score=66.31 Aligned_cols=36 Identities=31% Similarity=0.360 Sum_probs=32.2
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001707 762 LRPCKGILLFGPPGTGKTLLAKALATEAGANFISIT 797 (1023)
Q Consensus 762 i~p~~gVLL~GPPGTGKT~LArAIA~elg~~fi~vs 797 (1023)
..++..|+|.|.+|+|||++++.+|..++.+|+..+
T Consensus 7 ~~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D 42 (182)
T PRK13948 7 ERPVTWVALAGFMGTGKSRIGWELSRALMLHFIDTD 42 (182)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECC
Confidence 456688999999999999999999999999998654
No 365
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=96.65 E-value=0.0024 Score=66.28 Aligned_cols=23 Identities=48% Similarity=0.775 Sum_probs=20.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh
Q 001707 767 GILLFGPPGTGKTLLAKALATEA 789 (1023)
Q Consensus 767 gVLL~GPPGTGKT~LArAIA~el 789 (1023)
+|+|+|+||+|||||++.++..+
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHHHh
Confidence 48999999999999999999888
No 366
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=96.65 E-value=0.0053 Score=57.96 Aligned_cols=24 Identities=42% Similarity=0.459 Sum_probs=21.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhC
Q 001707 767 GILLFGPPGTGKTLLAKALATEAG 790 (1023)
Q Consensus 767 gVLL~GPPGTGKT~LArAIA~elg 790 (1023)
+++|+||+|+|||+++.+++....
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~ 25 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELL 25 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHH
Confidence 689999999999998888887763
No 367
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=96.63 E-value=0.0071 Score=78.38 Aligned_cols=137 Identities=20% Similarity=0.245 Sum_probs=88.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccc--hhhhhh-------HHHHHHHHHHHHhhcCCeEEEeccchhhh
Q 001707 767 GILLFGPPGTGKTLLAKALATEAGANFISITGSTLT--SKWFGD-------AEKLTKALFSFASKLAPVIIFVDEVDSLL 837 (1023)
Q Consensus 767 gVLL~GPPGTGKT~LArAIA~elg~~fi~vs~seL~--s~~~ge-------~e~~I~~lF~~A~k~~PsIIfIDEID~L~ 837 (1023)
.|||-||.-+|||.+...+|.+.|-.|+.++-.+-. ..|.|. .-..-..+...|-+. .--|++||+..-
T Consensus 890 P~LiQGpTSSGKTSMI~yla~~tghkfVRINNHEHTdlqeYiGTyvTdd~G~lsFkEGvLVeAlR~-GyWIVLDELNLA- 967 (4600)
T COG5271 890 PLLIQGPTSSGKTSMILYLARETGHKFVRINNHEHTDLQEYIGTYVTDDDGSLSFKEGVLVEALRR-GYWIVLDELNLA- 967 (4600)
T ss_pred cEEEecCCCCCcchHHHHHHHHhCccEEEecCcccchHHHHhhceeecCCCceeeehhHHHHHHhc-CcEEEeeccccC-
Confidence 599999999999999999999999999999875542 233331 011112223333332 346789999753
Q ss_pred hccCCCchhHHHHHHHHHHHhhhcCccC-------CCCceEEEEEecCCCCC------CcHHHHhhcCCceeecCCCHHH
Q 001707 838 GARGGAFEHEATRRMRNEFMSAWDGLRS-------KESQKILILGATNRPFD------LDDAVIRRLPRRIYVDLPDAEN 904 (1023)
Q Consensus 838 ~~r~~~~~~e~~~ril~~LL~~Ldgl~~-------~~~~~VlVIaTTN~p~~------Ld~aLlrRFd~~I~V~lPd~ee 904 (1023)
+...-..+|.|+.--+.+.- .+....+++||-|+|.. |..|++.|| ..++|.--.+++
T Consensus 968 --------pTDVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg~YgGRK~LSrAFRNRF-lE~hFddipedE 1038 (4600)
T COG5271 968 --------PTDVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPGGYGGRKGLSRAFRNRF-LEMHFDDIPEDE 1038 (4600)
T ss_pred --------cHHHHHHHHHhhccccceecCCcceeeccCCCeeEEeecCCCccccchHHHHHHHHhhh-HhhhcccCcHHH
Confidence 12222333444432222221 24456778888888865 788999999 577887777788
Q ss_pred HHHHHHHHHh
Q 001707 905 RMKILRIFLA 914 (1023)
Q Consensus 905 R~~ILk~~L~ 914 (1023)
...||...++
T Consensus 1039 le~ILh~rc~ 1048 (4600)
T COG5271 1039 LEEILHGRCE 1048 (4600)
T ss_pred HHHHHhccCc
Confidence 8888876543
No 368
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.62 E-value=0.021 Score=62.70 Aligned_cols=37 Identities=30% Similarity=0.356 Sum_probs=29.3
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEec
Q 001707 762 LRPCKGILLFGPPGTGKTLLAKALATEA----GANFISITG 798 (1023)
Q Consensus 762 i~p~~gVLL~GPPGTGKT~LArAIA~el----g~~fi~vs~ 798 (1023)
+.+..-++|.||||+|||+++..+|... |.+++.+++
T Consensus 27 ~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~ 67 (271)
T cd01122 27 LRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISL 67 (271)
T ss_pred EcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEc
Confidence 4555678999999999999999887664 667766665
No 369
>PRK13695 putative NTPase; Provisional
Probab=96.62 E-value=0.019 Score=59.15 Aligned_cols=23 Identities=43% Similarity=0.598 Sum_probs=20.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh
Q 001707 767 GILLFGPPGTGKTLLAKALATEA 789 (1023)
Q Consensus 767 gVLL~GPPGTGKT~LArAIA~el 789 (1023)
.++|.|++|+|||+|++.++..+
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 48999999999999999988775
No 370
>PRK00625 shikimate kinase; Provisional
Probab=96.61 E-value=0.0019 Score=67.26 Aligned_cols=31 Identities=39% Similarity=0.484 Sum_probs=29.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001707 767 GILLFGPPGTGKTLLAKALATEAGANFISIT 797 (1023)
Q Consensus 767 gVLL~GPPGTGKT~LArAIA~elg~~fi~vs 797 (1023)
.|+|.|.||+|||++++.+|..++++|+.++
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D 32 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTD 32 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhh
Confidence 5999999999999999999999999998765
No 371
>PF09336 Vps4_C: Vps4 C terminal oligomerisation domain; InterPro: IPR015415 This domain is found at the C-terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerisation []. ; PDB: 1XWI_A 3EIH_C 2QPA_C 3EIE_A 2RKO_A 2QP9_X 3MHV_C 3CF3_C 3CF1_A 3CF2_A ....
Probab=96.61 E-value=0.0014 Score=57.23 Aligned_cols=35 Identities=31% Similarity=0.776 Sum_probs=31.2
Q ss_pred CCCCHHHHHHHHHhhCCCcccchhhHHHHHHHHHHhC
Q 001707 975 RPLKLEDFIQSKAKVGPSVAYDAASMNELRKWNEQYG 1011 (1023)
Q Consensus 975 r~Lt~eDF~~Al~kv~PSvs~d~~~m~el~kW~d~yG 1011 (1023)
.+|+++||..|+++++|||+.++ +..+.+|++.||
T Consensus 28 p~it~~DF~~Al~~~kpSVs~~d--l~~ye~w~~~FG 62 (62)
T PF09336_consen 28 PPITMEDFEEALKKVKPSVSQED--LKKYEEWTKEFG 62 (62)
T ss_dssp HHBCHHHHHHHHHTCGGSS-HHH--HHHHHHHHHHTS
T ss_pred CCCCHHHHHHHHHHcCCCCCHHH--HHHHHHHHHHcC
Confidence 47999999999999999999876 778999999998
No 372
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=96.60 E-value=0.023 Score=61.21 Aligned_cols=38 Identities=26% Similarity=0.383 Sum_probs=30.2
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEecc
Q 001707 762 LRPCKGILLFGPPGTGKTLLAKALATEA----GANFISITGS 799 (1023)
Q Consensus 762 i~p~~gVLL~GPPGTGKT~LArAIA~el----g~~fi~vs~s 799 (1023)
+.+..-++|.|+||+|||+++..++... +.+++.+++.
T Consensus 10 l~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E 51 (242)
T cd00984 10 LQPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLE 51 (242)
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCC
Confidence 4566679999999999999999887654 7787777643
No 373
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=96.59 E-value=0.015 Score=64.06 Aligned_cols=28 Identities=29% Similarity=0.421 Sum_probs=24.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCC
Q 001707 764 PCKGILLFGPPGTGKTLLAKALATEAGA 791 (1023)
Q Consensus 764 p~~gVLL~GPPGTGKT~LArAIA~elg~ 791 (1023)
....++|.||+|+|||+|++.+++....
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~~ 42 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAITK 42 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcccc
Confidence 3456999999999999999999988754
No 374
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=96.57 E-value=0.0093 Score=72.20 Aligned_cols=174 Identities=21% Similarity=0.302 Sum_probs=94.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh--CCcEEEEeccccchhhhhhH-HHHHHHHHHHHhh---------cCCeEEEeccc
Q 001707 766 KGILLFGPPGTGKTLLAKALATEA--GANFISITGSTLTSKWFGDA-EKLTKALFSFASK---------LAPVIIFVDEV 833 (1023)
Q Consensus 766 ~gVLL~GPPGTGKT~LArAIA~el--g~~fi~vs~seL~s~~~ge~-e~~I~~lF~~A~k---------~~PsIIfIDEI 833 (1023)
-.|||.|.+||||-.||++|-..+ ..||+.++|..+-....++. -..+...|.-|+. .....+|+|||
T Consensus 337 ~pvll~GEtGtGKe~laraiH~~s~~~gpfvAvNCaAip~~liesELFGy~~GafTga~~kG~~g~~~~A~gGtlFldeI 416 (606)
T COG3284 337 LPVLLQGETGTGKEVLARAIHQNSEAAGPFVAVNCAAIPEALIESELFGYVAGAFTGARRKGYKGKLEQADGGTLFLDEI 416 (606)
T ss_pred CCeEecCCcchhHHHHHHHHHhcccccCCeEEEEeccchHHhhhHHHhccCccccccchhccccccceecCCCccHHHHh
Confidence 359999999999999999998776 46899999976643322110 1111122222221 12469999999
Q ss_pred hhhhhccCCCchhHHHHHHHHHH----HhhhcCccCCCCceEEEEEecCCCCC-------CcHHHHhhcCCceeecCCCH
Q 001707 834 DSLLGARGGAFEHEATRRMRNEF----MSAWDGLRSKESQKILILGATNRPFD-------LDDAVIRRLPRRIYVDLPDA 902 (1023)
Q Consensus 834 D~L~~~r~~~~~~e~~~ril~~L----L~~Ldgl~~~~~~~VlVIaTTN~p~~-------Ld~aLlrRFd~~I~V~lPd~ 902 (1023)
..|. .....+++..| +.-+.+-. ....|-||+||+++-. +-+.|-=|. ..+.+.+|..
T Consensus 417 gd~p--------~~~Qs~LLrVl~e~~v~p~g~~~--~~vdirvi~ath~dl~~lv~~g~fredLyyrL-~~~~i~lP~l 485 (606)
T COG3284 417 GDMP--------LALQSRLLRVLQEGVVTPLGGTR--IKVDIRVIAATHRDLAQLVEQGRFREDLYYRL-NAFVITLPPL 485 (606)
T ss_pred hhch--------HHHHHHHHHHHhhCceeccCCcc--eeEEEEEEeccCcCHHHHHHcCCchHHHHHHh-cCeeeccCch
Confidence 8872 11112222111 11122221 3456889999986421 222333244 2455667777
Q ss_pred HHHHH---HHHHHHhccccC-CccCHHHHHHHcc-CC--cHHHHHHHHHHHHHHH
Q 001707 903 ENRMK---ILRIFLAHESLE-SGFQFNELANATE-GY--SGSDLKNLCIAAAYRP 950 (1023)
Q Consensus 903 eeR~~---ILk~~L~~~~l~-~dvdl~~LA~~Te-Gy--SgaDL~~L~~~Aa~~A 950 (1023)
.+|.. .|..++..+.-. -.++-..++.... .+ +.++|.++++.++..+
T Consensus 486 r~R~d~~~~l~~~~~~~~~~~~~l~~~~~~~l~~~~WPGNirel~~v~~~~~~l~ 540 (606)
T COG3284 486 RERSDRIPLLDRILKRENDWRLQLDDDALARLLAYRWPGNIRELDNVIERLAALS 540 (606)
T ss_pred hcccccHHHHHHHHHHccCCCccCCHHHHHHHHhCCCCCcHHHHHHHHHHHHHcC
Confidence 66544 455555443321 2223233333322 12 5688999888777644
No 375
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=96.57 E-value=0.096 Score=58.82 Aligned_cols=29 Identities=28% Similarity=0.256 Sum_probs=24.9
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCC
Q 001707 763 RPCKGILLFGPPGTGKTLLAKALATEAGA 791 (1023)
Q Consensus 763 ~p~~gVLL~GPPGTGKT~LArAIA~elg~ 791 (1023)
.++..|.|+|+=|+|||++.+.+-.++.-
T Consensus 18 ~~~~~IgL~G~WGsGKSs~l~~l~~~L~~ 46 (325)
T PF07693_consen 18 DDPFVIGLYGEWGSGKSSFLNMLKEELKE 46 (325)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 45678999999999999999999888743
No 376
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=96.56 E-value=0.012 Score=67.34 Aligned_cols=93 Identities=14% Similarity=0.219 Sum_probs=60.3
Q ss_pred HHHHHHHHHhh-cCCeEEEEcCchhhhhhccCCccHHHHHHHHHHH--HhcCC-CCEEEEecccCCCCCccccccccccc
Q 001707 473 AMEALCEVLHS-TQPLIVYFPDSSLWLSRAVPRCNRKEFVRKVEEM--FDQLS-GPVVLICGQNKNETGPKEKEKFTMIL 548 (1023)
Q Consensus 473 ~i~~L~e~~~~-~~p~Iiff~di~~~~~~s~~~~~~~~~~s~l~~~--~~~~~-g~v~vI~~~~~~d~~~~~~~~~~~~~ 548 (1023)
+++.+++.+.. .+|.||+|||+|.+.... ..++..|... ...++ .++.+|+.+|.++.
T Consensus 116 ~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~------~~~L~~l~~~~~~~~~~~~~v~lI~i~n~~~~------------ 177 (365)
T TIGR02928 116 VFRRLYKELNERGDSLIIVLDEIDYLVGDD------DDLLYQLSRARSNGDLDNAKVGVIGISNDLKF------------ 177 (365)
T ss_pred HHHHHHHHHHhcCCeEEEEECchhhhccCC------cHHHHhHhccccccCCCCCeEEEEEEECCcch------------
Confidence 46667776654 578999999999987321 1333233332 23333 45555544443220
Q ss_pred cccccccCCCCcchhhhcccccCCCcchHHHHhccc-cEEEEcCCChHHHHHHHHHHHH
Q 001707 549 PNFGRLAKLPLPLQRLTEGLKATKRSDDNEIYNLFT-NVLSIHPPKEEDLLRTFNKQVE 606 (1023)
Q Consensus 549 ~~~~~~~~~~~~~~~LvIGmTNR~d~iDeaL~rrFe-~~ieI~LPdee~Rl~Il~Iht~ 606 (1023)
.+.+++.+.+||. ..++|++++.+...+|++.+++
T Consensus 178 -----------------------~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~ 213 (365)
T TIGR02928 178 -----------------------RENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAE 213 (365)
T ss_pred -----------------------HhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHH
Confidence 1236778887885 7899999999999999998865
No 377
>PRK14974 cell division protein FtsY; Provisional
Probab=96.56 E-value=0.02 Score=65.70 Aligned_cols=36 Identities=31% Similarity=0.320 Sum_probs=28.0
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecc
Q 001707 764 PCKGILLFGPPGTGKTLLAKALATEA---GANFISITGS 799 (1023)
Q Consensus 764 p~~gVLL~GPPGTGKT~LArAIA~el---g~~fi~vs~s 799 (1023)
.+.-++|.||+|+|||++++.+|..+ +..+..+.+.
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~D 177 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGD 177 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCC
Confidence 35678999999999999999998766 5556555544
No 378
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=96.56 E-value=0.0018 Score=65.73 Aligned_cols=32 Identities=47% Similarity=0.802 Sum_probs=29.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001707 766 KGILLFGPPGTGKTLLAKALATEAGANFISIT 797 (1023)
Q Consensus 766 ~gVLL~GPPGTGKT~LArAIA~elg~~fi~vs 797 (1023)
++||+.|-||||||+++..||..++++++.++
T Consensus 8 PNILvtGTPG~GKstl~~~lae~~~~~~i~is 39 (176)
T KOG3347|consen 8 PNILVTGTPGTGKSTLAERLAEKTGLEYIEIS 39 (176)
T ss_pred CCEEEeCCCCCCchhHHHHHHHHhCCceEehh
Confidence 47999999999999999999999999998864
No 379
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=96.56 E-value=0.016 Score=67.16 Aligned_cols=111 Identities=14% Similarity=0.214 Sum_probs=70.0
Q ss_pred HHHHHHHHHhh-cCCeEEEEcCchhhhhhccCCccHHHHHHHHHHHHhcCCC-CEEEEecccCCCCCccccccccccccc
Q 001707 473 AMEALCEVLHS-TQPLIVYFPDSSLWLSRAVPRCNRKEFVRKVEEMFDQLSG-PVVLICGQNKNETGPKEKEKFTMILPN 550 (1023)
Q Consensus 473 ~i~~L~e~~~~-~~p~Iiff~di~~~~~~s~~~~~~~~~~s~l~~~~~~~~g-~v~vI~~~~~~d~~~~~~~~~~~~~~~ 550 (1023)
+++.+.+.+.+ .+|.||+|||+|.+.... . ...+..|...++.+++ ++.||+..|..+
T Consensus 125 ~~~~~~~~l~~~~~~~viviDE~d~l~~~~---~--~~~l~~l~~~~~~~~~~~v~vI~i~~~~~--------------- 184 (394)
T PRK00411 125 LFDKIAEYLDERDRVLIVALDDINYLFEKE---G--NDVLYSLLRAHEEYPGARIGVIGISSDLT--------------- 184 (394)
T ss_pred HHHHHHHHHHhcCCEEEEEECCHhHhhccC---C--chHHHHHHHhhhccCCCeEEEEEEECCcc---------------
Confidence 55666666664 578999999999987322 1 1344445555666666 565664444332
Q ss_pred cccccCCCCcchhhhcccccCCCcchHHHHhcc-ccEEEEcCCChHHHHHHHHHHHHHHh-hhhhhhhhHHHHHH
Q 001707 551 FGRLAKLPLPLQRLTEGLKATKRSDDNEIYNLF-TNVLSIHPPKEEDLLRTFNKQVEEDR-RIVIYRSNLNELHK 623 (1023)
Q Consensus 551 ~~~~~~~~~~~~~LvIGmTNR~d~iDeaL~rrF-e~~ieI~LPdee~Rl~Il~Iht~~~~-~~~~~~~~v~~l~~ 623 (1023)
-++.+++.+..|| ...++|++++.+...+||+.+++..- .....++.++.++.
T Consensus 185 --------------------~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~ 239 (394)
T PRK00411 185 --------------------FLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIAD 239 (394)
T ss_pred --------------------hhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHH
Confidence 0133667777666 46789999999999999998864321 12233444556655
No 380
>PRK14532 adenylate kinase; Provisional
Probab=96.55 E-value=0.0021 Score=66.81 Aligned_cols=35 Identities=37% Similarity=0.614 Sum_probs=28.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccch
Q 001707 767 GILLFGPPGTGKTLLAKALATEAGANFISITGSTLTS 803 (1023)
Q Consensus 767 gVLL~GPPGTGKT~LArAIA~elg~~fi~vs~seL~s 803 (1023)
.|+|.||||+|||++|+.+|..+|++++. ..+++.
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~is--~~d~lr 36 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQLS--TGDMLR 36 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEEe--CcHHHH
Confidence 58999999999999999999999876654 444443
No 381
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.55 E-value=0.28 Score=58.33 Aligned_cols=73 Identities=21% Similarity=0.279 Sum_probs=47.3
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEeccccchh-------hh-------------hhHHHHHHHHHHH
Q 001707 764 PCKGILLFGPPGTGKTLLAKALATEA----GANFISITGSTLTSK-------WF-------------GDAEKLTKALFSF 819 (1023)
Q Consensus 764 p~~gVLL~GPPGTGKT~LArAIA~el----g~~fi~vs~seL~s~-------~~-------------ge~e~~I~~lF~~ 819 (1023)
+|..+++.|++|+|||+++..+|..+ |..+..+++...... +. ..+..........
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al~~ 177 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRALEY 177 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHH
Confidence 45679999999999999998888764 566766666533211 00 0123334455555
Q ss_pred HhhcCCeEEEeccchhh
Q 001707 820 ASKLAPVIIFVDEVDSL 836 (1023)
Q Consensus 820 A~k~~PsIIfIDEID~L 836 (1023)
+......+|+||=..++
T Consensus 178 ~~~~~~DvVIIDTaGr~ 194 (428)
T TIGR00959 178 AKENGFDVVIVDTAGRL 194 (428)
T ss_pred HHhcCCCEEEEeCCCcc
Confidence 55566778988876554
No 382
>PRK04328 hypothetical protein; Provisional
Probab=96.55 E-value=0.025 Score=62.16 Aligned_cols=39 Identities=26% Similarity=0.445 Sum_probs=28.8
Q ss_pred CCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEec
Q 001707 759 GNLLRPCKGILLFGPPGTGKTLLAKALATEA---GANFISITG 798 (1023)
Q Consensus 759 ~gli~p~~gVLL~GPPGTGKT~LArAIA~el---g~~fi~vs~ 798 (1023)
+| +.+...+||+||||||||.|+..++.+. |-+.+.++.
T Consensus 18 GG-ip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ 59 (249)
T PRK04328 18 GG-IPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVAL 59 (249)
T ss_pred CC-CcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEe
Confidence 45 4566789999999999999998876542 555555543
No 383
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=96.53 E-value=0.033 Score=67.29 Aligned_cols=86 Identities=6% Similarity=0.092 Sum_probs=59.3
Q ss_pred HHHHHHHHhh----cCCeEEEEcCchhhhhhccCCccHHHHHHHHHHHHhcCCCCEEEEecccCCCCCcccccccccccc
Q 001707 474 MEALCEVLHS----TQPLIVYFPDSSLWLSRAVPRCNRKEFVRKVEEMFDQLSGPVVLICGQNKNETGPKEKEKFTMILP 549 (1023)
Q Consensus 474 i~~L~e~~~~----~~p~Iiff~di~~~~~~s~~~~~~~~~~s~l~~~~~~~~g~v~vI~~~~~~d~~~~~~~~~~~~~~ 549 (1023)
|..+.+.+.. ...-||++||++.+-. .-.+.|++.|+..++.+++|.++
T Consensus 113 Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~---------~a~naLLk~LEepp~~~vfI~aT------------------ 165 (507)
T PRK06645 113 IRRIIESAEYKPLQGKHKIFIIDEVHMLSK---------GAFNALLKTLEEPPPHIIFIFAT------------------ 165 (507)
T ss_pred HHHHHHHHHhccccCCcEEEEEEChhhcCH---------HHHHHHHHHHhhcCCCEEEEEEe------------------
Confidence 3445554432 2345999999987522 33456677788888888877444
Q ss_pred ccccccCCCCcchhhhcccccCCCcchHHHHhccccEEEEcCCChHHHHHHHHHHHHH
Q 001707 550 NFGRLAKLPLPLQRLTEGLKATKRSDDNEIYNLFTNVLSIHPPKEEDLLRTFNKQVEE 607 (1023)
Q Consensus 550 ~~~~~~~~~~~~~~LvIGmTNR~d~iDeaL~rrFe~~ieI~LPdee~Rl~Il~Iht~~ 607 (1023)
+.++.|.++|..|. ..++|..++.+...++++...++
T Consensus 166 --------------------te~~kI~~tI~SRc-~~~ef~~ls~~el~~~L~~i~~~ 202 (507)
T PRK06645 166 --------------------TEVQKIPATIISRC-QRYDLRRLSFEEIFKLLEYITKQ 202 (507)
T ss_pred --------------------CChHHhhHHHHhcc-eEEEccCCCHHHHHHHHHHHHHH
Confidence 33455788888888 57999999999888888777543
No 384
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=96.53 E-value=0.0035 Score=68.99 Aligned_cols=98 Identities=24% Similarity=0.364 Sum_probs=59.0
Q ss_pred CcccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC---CcEEEEe-cccc
Q 001707 726 GVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAG---ANFISIT-GSTL 801 (1023)
Q Consensus 726 ~vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~elg---~~fi~vs-~seL 801 (1023)
..++++++-.....+.+.+++... ++...+||+.||+|+|||+++++++.+.. ..++.+. ..++
T Consensus 100 ~~sle~l~~~~~~~~~~~~~l~~~------------v~~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~ 167 (270)
T PF00437_consen 100 PFSLEDLGESGSIPEEIAEFLRSA------------VRGRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPEL 167 (270)
T ss_dssp --CHCCCCHTHHCHHHHHHHHHHC------------HHTTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S
T ss_pred cccHhhccCchhhHHHHHHHHhhc------------cccceEEEEECCCccccchHHHHHhhhccccccceEEeccccce
Confidence 346777766665556666655331 12336799999999999999999998873 3444433 2222
Q ss_pred chh------hh-hhHHHHHHHHHHHHhhcCCeEEEeccchh
Q 001707 802 TSK------WF-GDAEKLTKALFSFASKLAPVIIFVDEVDS 835 (1023)
Q Consensus 802 ~s~------~~-ge~e~~I~~lF~~A~k~~PsIIfIDEID~ 835 (1023)
.-. .. .........++..+-+..|.+|+|.||-.
T Consensus 168 ~l~~~~~~~~~~~~~~~~~~~~l~~~LR~~pD~iiigEiR~ 208 (270)
T PF00437_consen 168 RLPGPNQIQIQTRRDEISYEDLLKSALRQDPDVIIIGEIRD 208 (270)
T ss_dssp --SCSSEEEEEEETTTBSHHHHHHHHTTS--SEEEESCE-S
T ss_pred eecccceEEEEeecCcccHHHHHHHHhcCCCCcccccccCC
Confidence 110 00 11233455667777888999999999964
No 385
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=96.52 E-value=0.011 Score=62.71 Aligned_cols=69 Identities=30% Similarity=0.470 Sum_probs=42.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH-----hCCcE-------------EEEeccc-cc---hhhhhhHHHHHHHHHHHHhhc
Q 001707 766 KGILLFGPPGTGKTLLAKALATE-----AGANF-------------ISITGST-LT---SKWFGDAEKLTKALFSFASKL 823 (1023)
Q Consensus 766 ~gVLL~GPPGTGKT~LArAIA~e-----lg~~f-------------i~vs~se-L~---s~~~ge~e~~I~~lF~~A~k~ 823 (1023)
.-++|.||.|+|||+|++.|+.. .|.++ ..+...+ +. +.+..+. ..+..++..+...
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v~a~~~~~q~~~l~~~~~~~d~l~~~~s~~~~e~-~~~~~iL~~~~~~ 104 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVNVILAQAGAPVCASSFELPPVKIFTSIRVSDDLRDGISYFYAEL-RRLKEIVEKAKKG 104 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHHHcCCEEecCccCcccceEEEeccchhccccccChHHHHH-HHHHHHHHhccCC
Confidence 56899999999999999999853 34432 1111111 10 1111122 4466667766555
Q ss_pred CCeEEEeccchh
Q 001707 824 APVIIFVDEVDS 835 (1023)
Q Consensus 824 ~PsIIfIDEID~ 835 (1023)
.|.+|++||.-.
T Consensus 105 ~p~llllDEp~~ 116 (199)
T cd03283 105 EPVLFLLDEIFK 116 (199)
T ss_pred CCeEEEEecccC
Confidence 899999999743
No 386
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=96.52 E-value=0.0022 Score=66.13 Aligned_cols=33 Identities=21% Similarity=0.497 Sum_probs=27.3
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccc
Q 001707 768 ILLFGPPGTGKTLLAKALATEAGANFISITGSTLT 802 (1023)
Q Consensus 768 VLL~GPPGTGKT~LArAIA~elg~~fi~vs~seL~ 802 (1023)
|+|+||||+|||++|+.+|..+++..+ ++.+++
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~~~i--s~~d~l 34 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGFTHL--SAGDLL 34 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEE--ECChHH
Confidence 789999999999999999999986554 444544
No 387
>COG1485 Predicted ATPase [General function prediction only]
Probab=96.51 E-value=0.021 Score=65.28 Aligned_cols=29 Identities=31% Similarity=0.589 Sum_probs=25.6
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCC
Q 001707 763 RPCKGILLFGPPGTGKTLLAKALATEAGA 791 (1023)
Q Consensus 763 ~p~~gVLL~GPPGTGKT~LArAIA~elg~ 791 (1023)
.+++|+.|||+-|.|||+|.-.....+-.
T Consensus 63 ~~~~GlYl~GgVGrGKT~LMD~Fy~~lp~ 91 (367)
T COG1485 63 GPVRGLYLWGGVGRGKTMLMDLFYESLPG 91 (367)
T ss_pred CCCceEEEECCCCccHHHHHHHHHhhCCc
Confidence 47799999999999999999999887743
No 388
>PRK13949 shikimate kinase; Provisional
Probab=96.47 E-value=0.0024 Score=66.01 Aligned_cols=31 Identities=52% Similarity=0.728 Sum_probs=29.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001707 767 GILLFGPPGTGKTLLAKALATEAGANFISIT 797 (1023)
Q Consensus 767 gVLL~GPPGTGKT~LArAIA~elg~~fi~vs 797 (1023)
.|+|.|+||+|||++++.+|..++++|+..+
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~~~~id~D 33 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELGLSFIDLD 33 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCeeccc
Confidence 6999999999999999999999999998865
No 389
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=96.45 E-value=0.0045 Score=68.99 Aligned_cols=68 Identities=25% Similarity=0.391 Sum_probs=43.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCC----------cEEEEe-ccccchhh-------hh------hHHHHHHHHHHHHh
Q 001707 766 KGILLFGPPGTGKTLLAKALATEAGA----------NFISIT-GSTLTSKW-------FG------DAEKLTKALFSFAS 821 (1023)
Q Consensus 766 ~gVLL~GPPGTGKT~LArAIA~elg~----------~fi~vs-~seL~s~~-------~g------e~e~~I~~lF~~A~ 821 (1023)
.+++|.||+|+|||+|.++++..+.. .+..++ ..++...+ .+ +.......++..++
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k~~~~~~~i~ 191 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGCPKAEGMMMLIR 191 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhcccccccccccccccccchHHHHHHHHHH
Confidence 57999999999999999999988732 222121 11221110 00 11122345666777
Q ss_pred hcCCeEEEeccc
Q 001707 822 KLAPVIIFVDEV 833 (1023)
Q Consensus 822 k~~PsIIfIDEI 833 (1023)
.+.|.||++||+
T Consensus 192 ~~~P~villDE~ 203 (270)
T TIGR02858 192 SMSPDVIVVDEI 203 (270)
T ss_pred hCCCCEEEEeCC
Confidence 789999999996
No 390
>PRK06762 hypothetical protein; Provisional
Probab=96.45 E-value=0.0071 Score=61.48 Aligned_cols=37 Identities=27% Similarity=0.442 Sum_probs=30.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccc
Q 001707 766 KGILLFGPPGTGKTLLAKALATEAGANFISITGSTLT 802 (1023)
Q Consensus 766 ~gVLL~GPPGTGKT~LArAIA~elg~~fi~vs~seL~ 802 (1023)
.-|+|+|+||+|||++|+.++..++..++.++...+.
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~r 39 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVVR 39 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHHH
Confidence 4588999999999999999999997666666654443
No 391
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.44 E-value=0.0074 Score=70.09 Aligned_cols=110 Identities=21% Similarity=0.284 Sum_probs=60.3
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh----C-CcEEEEeccccchh----------hhhh------HHHHHHHHHHHHhh
Q 001707 764 PCKGILLFGPPGTGKTLLAKALATEA----G-ANFISITGSTLTSK----------WFGD------AEKLTKALFSFASK 822 (1023)
Q Consensus 764 p~~gVLL~GPPGTGKT~LArAIA~el----g-~~fi~vs~seL~s~----------~~ge------~e~~I~~lF~~A~k 822 (1023)
....++|.||+|+|||+++..||..+ | ..+..+....+... ..+- ....+.... .+.
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l--~~l 213 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLAL--AEL 213 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHH--HHh
Confidence 34578999999999999999999764 3 24444444332100 0010 001111111 222
Q ss_pred cCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhcCccCCCCceEEEEEecCCCCCCcHHH
Q 001707 823 LAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPFDLDDAV 887 (1023)
Q Consensus 823 ~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~~~~~VlVIaTTN~p~~Ld~aL 887 (1023)
....+|+||....... +..+.+.+..+..... .-..++||.+|+....+...+
T Consensus 214 ~~~DlVLIDTaG~~~~-----------d~~l~e~La~L~~~~~-~~~~lLVLsAts~~~~l~evi 266 (374)
T PRK14722 214 RNKHMVLIDTIGMSQR-----------DRTVSDQIAMLHGADT-PVQRLLLLNATSHGDTLNEVV 266 (374)
T ss_pred cCCCEEEEcCCCCCcc-----------cHHHHHHHHHHhccCC-CCeEEEEecCccChHHHHHHH
Confidence 3468999999864310 1112333344433321 235688888888887776543
No 392
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=96.44 E-value=0.0099 Score=76.63 Aligned_cols=142 Identities=20% Similarity=0.243 Sum_probs=82.0
Q ss_pred CCCceEEEEcCCCChHHHH-HHHHHHHhCCcEEEEeccccchhhhhhHHHHHHHHHHHHhhc--------------CCeE
Q 001707 763 RPCKGILLFGPPGTGKTLL-AKALATEAGANFISITGSTLTSKWFGDAEKLTKALFSFASKL--------------APVI 827 (1023)
Q Consensus 763 ~p~~gVLL~GPPGTGKT~L-ArAIA~elg~~fi~vs~seL~s~~~ge~e~~I~~lF~~A~k~--------------~PsI 827 (1023)
...++++++||||+|||+| .-++-.++-..|+.++.+.-.. ++..+..+-+..... .--|
T Consensus 1492 nt~R~~i~cGppGSgK~mlM~~sLrs~~~~ev~~~Nfs~~t~-----T~s~ls~Ler~t~yy~~tg~~~l~PK~~vK~lV 1566 (3164)
T COG5245 1492 NTLRSYIYCGPPGSGKEMLMCPSLRSELITEVKYFNFSTCTM-----TPSKLSVLERETEYYPNTGVVRLYPKPVVKDLV 1566 (3164)
T ss_pred hccceEEEECCCCCccchhcchhhhhhhheeeeEEeeccccC-----CHHHHHHHHhhceeeccCCeEEEccCcchhheE
Confidence 3457899999999999995 4567777777777766543221 122222222221111 1259
Q ss_pred EEeccchhhhhccCCCch-hHHHHHHHHH------HHhhhcCccCCCCceEEEEEecCCCCCC-----cHHHHhhcCCce
Q 001707 828 IFVDEVDSLLGARGGAFE-HEATRRMRNE------FMSAWDGLRSKESQKILILGATNRPFDL-----DDAVIRRLPRRI 895 (1023)
Q Consensus 828 IfIDEID~L~~~r~~~~~-~e~~~ril~~------LL~~Ldgl~~~~~~~VlVIaTTN~p~~L-----d~aLlrRFd~~I 895 (1023)
||.|||+.--+..-.+.. --..+.++.. +-..|-. -.+++|.|++|++.+. ...++|+- ..+
T Consensus 1567 LFcDeInLp~~~~y~~~~vI~FlR~l~e~QGfw~s~~~~wvT-----I~~i~l~Gacnp~td~gRv~~~eRf~r~~-v~v 1640 (3164)
T COG5245 1567 LFCDEINLPYGFEYYPPTVIVFLRPLVERQGFWSSIAVSWVT-----ICGIILYGACNPGTDEGRVKYYERFIRKP-VFV 1640 (3164)
T ss_pred EEeeccCCccccccCCCceEEeeHHHHHhcccccchhhhHhh-----hcceEEEccCCCCCCcccCccHHHHhcCc-eEE
Confidence 999999932211111110 1112222211 1122211 2478999999998763 34555543 457
Q ss_pred eecCCCHHHHHHHHHHHHhc
Q 001707 896 YVDLPDAENRMKILRIFLAH 915 (1023)
Q Consensus 896 ~V~lPd~eeR~~ILk~~L~~ 915 (1023)
++..|.......|...++..
T Consensus 1641 f~~ype~~SL~~Iyea~l~~ 1660 (3164)
T COG5245 1641 FCCYPELASLRNIYEAVLMG 1660 (3164)
T ss_pred EecCcchhhHHHHHHHHHHH
Confidence 88899999999998887764
No 393
>PRK14531 adenylate kinase; Provisional
Probab=96.43 E-value=0.003 Score=65.77 Aligned_cols=31 Identities=35% Similarity=0.665 Sum_probs=27.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001707 766 KGILLFGPPGTGKTLLAKALATEAGANFISI 796 (1023)
Q Consensus 766 ~gVLL~GPPGTGKT~LArAIA~elg~~fi~v 796 (1023)
..|+|+||||+|||++++.+|..+|++++.+
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g~~~is~ 33 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHGLRHLST 33 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeEec
Confidence 3599999999999999999999999887653
No 394
>PRK04195 replication factor C large subunit; Provisional
Probab=96.43 E-value=0.039 Score=66.25 Aligned_cols=62 Identities=27% Similarity=0.324 Sum_probs=44.5
Q ss_pred cccccccccchhhHHHHHHhhhccccCccchhhccccccCCCCceeeccCCChhHHHHHHHHHHHhhcCCcEEEeecC
Q 001707 180 SWDTFPYYINENTKSLLVECVGSHLKHKKFTATFGARLTSSSGRILLRSVPGTELYRERLIRALARELQVPLLVLDSS 257 (1023)
Q Consensus 180 sf~~fpyylse~tk~~L~~~~~~hl~~~~~~~~~~~~l~~~~~~iLL~~~~gsE~y~e~L~kAlA~~~~a~ll~~ds~ 257 (1023)
+|+++-+. +..+..|.+.+-.+.+ . ...+.+||+|||| +++++||+|||++++..++.++.+
T Consensus 12 ~l~dlvg~--~~~~~~l~~~l~~~~~-g-----------~~~~~lLL~GppG--~GKTtla~ala~el~~~~ielnas 73 (482)
T PRK04195 12 TLSDVVGN--EKAKEQLREWIESWLK-G-----------KPKKALLLYGPPG--VGKTSLAHALANDYGWEVIELNAS 73 (482)
T ss_pred CHHHhcCC--HHHHHHHHHHHHHHhc-C-----------CCCCeEEEECCCC--CCHHHHHHHHHHHcCCCEEEEccc
Confidence 44554443 7777777766543331 0 1257799999999 999999999999999887777664
No 395
>PRK06217 hypothetical protein; Validated
Probab=96.42 E-value=0.003 Score=65.74 Aligned_cols=31 Identities=29% Similarity=0.410 Sum_probs=28.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001707 767 GILLFGPPGTGKTLLAKALATEAGANFISIT 797 (1023)
Q Consensus 767 gVLL~GPPGTGKT~LArAIA~elg~~fi~vs 797 (1023)
.|+|.|+||+|||++|++|+..++++++..+
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D 33 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIPHLDTD 33 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEEcC
Confidence 5999999999999999999999999887654
No 396
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=96.41 E-value=0.0048 Score=68.36 Aligned_cols=72 Identities=29% Similarity=0.393 Sum_probs=51.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHH------HhCCcEEEEeccccchhhhhhH-HHHHHHHHHHHh--------hcCCeEEEe
Q 001707 766 KGILLFGPPGTGKTLLAKALAT------EAGANFISITGSTLTSKWFGDA-EKLTKALFSFAS--------KLAPVIIFV 830 (1023)
Q Consensus 766 ~gVLL~GPPGTGKT~LArAIA~------elg~~fi~vs~seL~s~~~ge~-e~~I~~lF~~A~--------k~~PsIIfI 830 (1023)
..+||.||.|.||++||+.|.. .+.-+|+.++|..+.++..... -..++..|.-|+ .....++|+
T Consensus 209 ~p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~amsalfghvkgaftga~~~r~gllrsadggmlfl 288 (531)
T COG4650 209 APILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDTAMSALFGHVKGAFTGARESREGLLRSADGGMLFL 288 (531)
T ss_pred CCeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCchHHHHHHhhhccccccchhhhhhhhccCCCceEeh
Confidence 4599999999999999999863 4577999999999876532111 122333343332 234679999
Q ss_pred ccchhhh
Q 001707 831 DEVDSLL 837 (1023)
Q Consensus 831 DEID~L~ 837 (1023)
|||..+.
T Consensus 289 deigelg 295 (531)
T COG4650 289 DEIGELG 295 (531)
T ss_pred HhhhhcC
Confidence 9999885
No 397
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=96.38 E-value=0.003 Score=62.11 Aligned_cols=30 Identities=37% Similarity=0.640 Sum_probs=28.1
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001707 768 ILLFGPPGTGKTLLAKALATEAGANFISIT 797 (1023)
Q Consensus 768 VLL~GPPGTGKT~LArAIA~elg~~fi~vs 797 (1023)
|.|.|+||+|||++|+.+|..++++++..+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~~~~~~~ 31 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDTG 31 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence 789999999999999999999999998876
No 398
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.37 E-value=0.032 Score=65.53 Aligned_cols=121 Identities=20% Similarity=0.191 Sum_probs=68.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccchhhhhhHHHHHHHHHHHHhhcCCeEEEeccchhhhhccCCCchh
Q 001707 767 GILLFGPPGTGKTLLAKALATEAGANFISITGSTLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEH 846 (1023)
Q Consensus 767 gVLL~GPPGTGKT~LArAIA~elg~~fi~vs~seL~s~~~ge~e~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~ 846 (1023)
-++|+||.+||||++++.+.....-.++.++..++......- ......+..++......||||||+.+- .+
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~~iy~~~~d~~~~~~~l--~d~~~~~~~~~~~~~~yifLDEIq~v~------~W- 109 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEEIIYINFDDLRLDRIEL--LDLLRAYIELKEREKSYIFLDEIQNVP------DW- 109 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcceEEEEecchhcchhhH--HHHHHHHHHhhccCCceEEEecccCch------hH-
Confidence 799999999999999988887775556666665554433221 122222333333355899999998862 11
Q ss_pred HHHHHHHHHHHhhhcCccCCCCceEEEEEecCCCC--CCcHHHHhhcCCceeecCCCHHHHHH
Q 001707 847 EATRRMRNEFMSAWDGLRSKESQKILILGATNRPF--DLDDAVIRRLPRRIYVDLPDAENRMK 907 (1023)
Q Consensus 847 e~~~ril~~LL~~Ldgl~~~~~~~VlVIaTTN~p~--~Ld~aLlrRFd~~I~V~lPd~eeR~~ 907 (1023)
.+.+..+ .|.. ...+++.+++...- .+.+.+..|. ..+.+.+.+..+...
T Consensus 110 ---~~~lk~l---~d~~----~~~v~itgsss~ll~~~~~~~L~GR~-~~~~l~PlSF~Efl~ 161 (398)
T COG1373 110 ---ERALKYL---YDRG----NLDVLITGSSSSLLSKEISESLAGRG-KDLELYPLSFREFLK 161 (398)
T ss_pred ---HHHHHHH---Hccc----cceEEEECCchhhhccchhhhcCCCc-eeEEECCCCHHHHHh
Confidence 1112222 2221 11345544443221 2334555574 567777778888754
No 399
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=96.37 E-value=0.03 Score=58.23 Aligned_cols=71 Identities=17% Similarity=0.180 Sum_probs=46.8
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccchhhhh-----------------hHHHHHHHHHHHHhhcCCeEEEe
Q 001707 768 ILLFGPPGTGKTLLAKALATEAGANFISITGSTLTSKWFG-----------------DAEKLTKALFSFASKLAPVIIFV 830 (1023)
Q Consensus 768 VLL~GPPGTGKT~LArAIA~elg~~fi~vs~seL~s~~~g-----------------e~e~~I~~lF~~A~k~~PsIIfI 830 (1023)
+|+.|++|+|||++|..++...+.+++++....-...-.. +....+...+... ..+.+|+|
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~~~~y~at~~~~d~em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~--~~~~~VLI 79 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGGPVTYIATAEAFDDEMAERIARHRKRRPAHWRTIETPRDLVSALKEL--DPGDVVLI 79 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeEEEEccCcCCHHHHHHHHHHHHhCCCCceEeecHHHHHHHHHhc--CCCCEEEE
Confidence 6899999999999999999887778877765443221100 1112233333221 14679999
Q ss_pred ccchhhhhcc
Q 001707 831 DEVDSLLGAR 840 (1023)
Q Consensus 831 DEID~L~~~r 840 (1023)
|-+..|...-
T Consensus 80 Dclt~~~~n~ 89 (169)
T cd00544 80 DCLTLWVTNL 89 (169)
T ss_pred EcHhHHHHHh
Confidence 9999987554
No 400
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=96.34 E-value=0.0031 Score=65.33 Aligned_cols=33 Identities=48% Similarity=0.715 Sum_probs=27.7
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccc
Q 001707 768 ILLFGPPGTGKTLLAKALATEAGANFISITGSTLT 802 (1023)
Q Consensus 768 VLL~GPPGTGKT~LArAIA~elg~~fi~vs~seL~ 802 (1023)
|+|.||||+|||++|+.||..+++.++. ..+++
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~i~--~~~l~ 34 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPHIS--TGDLL 34 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEE--CcHHH
Confidence 8999999999999999999998877655 44443
No 401
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=96.33 E-value=0.041 Score=58.93 Aligned_cols=40 Identities=25% Similarity=0.364 Sum_probs=30.8
Q ss_pred CCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecc
Q 001707 759 GNLLRPCKGILLFGPPGTGKTLLAKALATEA---GANFISITGS 799 (1023)
Q Consensus 759 ~gli~p~~gVLL~GPPGTGKT~LArAIA~el---g~~fi~vs~s 799 (1023)
+| +.+...++|.|+||+|||+++..++... +-+++.++..
T Consensus 11 gG-i~~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e 53 (224)
T TIGR03880 11 GG-FPEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLE 53 (224)
T ss_pred CC-CCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 44 4566789999999999999999888653 6666666654
No 402
>PTZ00202 tuzin; Provisional
Probab=96.32 E-value=0.093 Score=62.07 Aligned_cols=59 Identities=12% Similarity=0.137 Sum_probs=45.3
Q ss_pred ccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecc
Q 001707 730 DDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGS 799 (1023)
Q Consensus 730 dDIgGle~vk~~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~elg~~fi~vs~s 799 (1023)
.++.|.+.....|...+... . ...++-++|.||+|||||+|++.++..++.+.+.++..
T Consensus 262 ~~FVGReaEla~Lr~VL~~~----------d-~~~privvLtG~~G~GKTTLlR~~~~~l~~~qL~vNpr 320 (550)
T PTZ00202 262 RQFVSREAEESWVRQVLRRL----------D-TAHPRIVVFTGFRGCGKSSLCRSAVRKEGMPAVFVDVR 320 (550)
T ss_pred cCCCCcHHHHHHHHHHHhcc----------C-CCCceEEEEECCCCCCHHHHHHHHHhcCCceEEEECCC
Confidence 47789999999998877421 1 12234688999999999999999999998776666654
No 403
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=96.31 E-value=0.01 Score=71.23 Aligned_cols=96 Identities=20% Similarity=0.283 Sum_probs=60.5
Q ss_pred CCcccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC---CcEEEEec-cc
Q 001707 725 IGVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAG---ANFISITG-ST 800 (1023)
Q Consensus 725 ~~vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~elg---~~fi~vs~-se 800 (1023)
...+++++|-..+..+.+..++.. +..-+|++||+|+|||++..++..++. .+++.+.- .+
T Consensus 217 ~~~~l~~Lg~~~~~~~~l~~~~~~---------------~~GlilitGptGSGKTTtL~a~L~~l~~~~~~iiTiEDpvE 281 (486)
T TIGR02533 217 VRLDLETLGMSPELLSRFERLIRR---------------PHGIILVTGPTGSGKTTTLYAALSRLNTPERNILTVEDPVE 281 (486)
T ss_pred CCCCHHHcCCCHHHHHHHHHHHhc---------------CCCEEEEEcCCCCCHHHHHHHHHhccCCCCCcEEEEcCCee
Confidence 345788888778888888876632 222379999999999999998887763 34544421 11
Q ss_pred cchh-----hhh-hHHHHHHHHHHHHhhcCCeEEEeccchh
Q 001707 801 LTSK-----WFG-DAEKLTKALFSFASKLAPVIIFVDEVDS 835 (1023)
Q Consensus 801 L~s~-----~~g-e~e~~I~~lF~~A~k~~PsIIfIDEID~ 835 (1023)
+.-. .+. ............+-+..|.||+|.||-.
T Consensus 282 ~~~~~~~q~~v~~~~g~~f~~~lr~~LR~dPDvI~vGEiRd 322 (486)
T TIGR02533 282 YQIEGIGQIQVNPKIGLTFAAGLRAILRQDPDIIMVGEIRD 322 (486)
T ss_pred eecCCCceEEEccccCccHHHHHHHHHhcCCCEEEEeCCCC
Confidence 1100 011 0111233344455678999999999954
No 404
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=96.31 E-value=0.045 Score=58.70 Aligned_cols=37 Identities=30% Similarity=0.414 Sum_probs=28.2
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEec
Q 001707 762 LRPCKGILLFGPPGTGKTLLAKALATEA---GANFISITG 798 (1023)
Q Consensus 762 i~p~~gVLL~GPPGTGKT~LArAIA~el---g~~fi~vs~ 798 (1023)
+.+...++|.||||+|||+|+..++.+. +-+.+.++.
T Consensus 17 i~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~ 56 (229)
T TIGR03881 17 IPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTT 56 (229)
T ss_pred CcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEc
Confidence 5666789999999999999999877543 555555554
No 405
>PRK14530 adenylate kinase; Provisional
Probab=96.28 E-value=0.0041 Score=66.40 Aligned_cols=30 Identities=40% Similarity=0.672 Sum_probs=27.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001707 767 GILLFGPPGTGKTLLAKALATEAGANFISI 796 (1023)
Q Consensus 767 gVLL~GPPGTGKT~LArAIA~elg~~fi~v 796 (1023)
.|+|.||||+|||++|+.||..++++++..
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~~~~i~~ 34 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFGVEHVTT 34 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 699999999999999999999999887754
No 406
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=96.28 E-value=0.0086 Score=69.60 Aligned_cols=69 Identities=23% Similarity=0.293 Sum_probs=44.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhC-----CcEEEEecc-ccc-----------hhhhhhHHHHHHHHHHHHhhcCCeEEE
Q 001707 767 GILLFGPPGTGKTLLAKALATEAG-----ANFISITGS-TLT-----------SKWFGDAEKLTKALFSFASKLAPVIIF 829 (1023)
Q Consensus 767 gVLL~GPPGTGKT~LArAIA~elg-----~~fi~vs~s-eL~-----------s~~~ge~e~~I~~lF~~A~k~~PsIIf 829 (1023)
.+|++||+|+|||+++++++.+.. ..++.+.-+ ++. ....+............+-+..|.+|+
T Consensus 151 lilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E~~~~~~~~~~~~~q~evg~~~~~~~~~l~~aLR~~PD~I~ 230 (372)
T TIGR02525 151 LGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIEYILGSPDDLLPPAQSQIGRDVDSFANGIRLALRRAPKIIG 230 (372)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCchhccCCCceeecccccccCCCccCHHHHHHHhhccCCCEEe
Confidence 489999999999999999988772 345544221 211 001111111234455667778999999
Q ss_pred eccchh
Q 001707 830 VDEVDS 835 (1023)
Q Consensus 830 IDEID~ 835 (1023)
|.|+-.
T Consensus 231 vGEiRd 236 (372)
T TIGR02525 231 VGEIRD 236 (372)
T ss_pred eCCCCC
Confidence 999953
No 407
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.27 E-value=0.065 Score=58.91 Aligned_cols=134 Identities=16% Similarity=0.279 Sum_probs=74.7
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHhCC--cEEEEeccccchhhh--------------hhHHHHHHH----HHHHHh
Q 001707 762 LRPCKGILLFGPPGTGKTLLAKALATEAGA--NFISITGSTLTSKWF--------------GDAEKLTKA----LFSFAS 821 (1023)
Q Consensus 762 i~p~~gVLL~GPPGTGKT~LArAIA~elg~--~fi~vs~seL~s~~~--------------ge~e~~I~~----lF~~A~ 821 (1023)
...+-.+++.|++|||||+|+..+...+.- ..+.+-++.....+. .+.+..+.. +-..+.
T Consensus 10 ~~~~fr~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t~~~n~~~~~~i~p~~i~~~~~~e~le~~l~~~k~~I~k~~~ 89 (241)
T PF04665_consen 10 LKDPFRMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLITPEYNNEYYKYIWPDHIFKVFDKEELEYILIRQKEKIEKYIK 89 (241)
T ss_pred cCCCceEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEecCCchhhhhhcchhhccccccHHHHHHHHHHHHHHHHHHhh
Confidence 344457999999999999999999877743 233332222211110 011111111 111111
Q ss_pred ---h---cCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhcCccCCCCceEEEEEecCCCCCCcHHHHhhcCCce
Q 001707 822 ---K---LAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPFDLDDAVIRRLPRRI 895 (1023)
Q Consensus 822 ---k---~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I 895 (1023)
. .++.+|++||+..- ..-...+..++.. | ..-++.+|..+.....|++.++.-.+..+
T Consensus 90 k~~~~k~~~~~LiIlDD~~~~----------~~k~~~l~~~~~~--g----RH~~is~i~l~Q~~~~lp~~iR~n~~y~i 153 (241)
T PF04665_consen 90 KSPQKKNNPRFLIILDDLGDK----------KLKSKILRQFFNN--G----RHYNISIIFLSQSYFHLPPNIRSNIDYFI 153 (241)
T ss_pred hhcccCCCCCeEEEEeCCCCc----------hhhhHHHHHHHhc--c----cccceEEEEEeeecccCCHHHhhcceEEE
Confidence 1 23689999997420 0112233444431 1 22358888899999999999877676655
Q ss_pred eecCCCHHHHHHHHHHH
Q 001707 896 YVDLPDAENRMKILRIF 912 (1023)
Q Consensus 896 ~V~lPd~eeR~~ILk~~ 912 (1023)
.+. -+..+...|++.+
T Consensus 154 ~~~-~s~~dl~~i~~~~ 169 (241)
T PF04665_consen 154 IFN-NSKRDLENIYRNM 169 (241)
T ss_pred Eec-CcHHHHHHHHHhc
Confidence 554 3555555555543
No 408
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.27 E-value=0.022 Score=60.50 Aligned_cols=109 Identities=23% Similarity=0.284 Sum_probs=57.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccchh-------h-------------hhhHHHHHHHHHHHHh
Q 001707 765 CKGILLFGPPGTGKTLLAKALATEA---GANFISITGSTLTSK-------W-------------FGDAEKLTKALFSFAS 821 (1023)
Q Consensus 765 ~~gVLL~GPPGTGKT~LArAIA~el---g~~fi~vs~seL~s~-------~-------------~ge~e~~I~~lF~~A~ 821 (1023)
|+-++|.||+|+|||+.+..+|.++ +..+-.+++...... | ..+....+......+.
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~ 80 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFR 80 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHh
Confidence 4568999999999999999998776 444444443322111 0 0012333444555554
Q ss_pred hcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhcCccCCCCceEEEEEecCCCCCCcH
Q 001707 822 KLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPFDLDD 885 (1023)
Q Consensus 822 k~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~~~~~VlVIaTTN~p~~Ld~ 885 (1023)
...-.+|+||=..+.. ...+.... +..++..+ .+...++|+.++...+.+..
T Consensus 81 ~~~~D~vlIDT~Gr~~------~d~~~~~e-l~~~~~~~-----~~~~~~LVlsa~~~~~~~~~ 132 (196)
T PF00448_consen 81 KKGYDLVLIDTAGRSP------RDEELLEE-LKKLLEAL-----NPDEVHLVLSATMGQEDLEQ 132 (196)
T ss_dssp HTTSSEEEEEE-SSSS------THHHHHHH-HHHHHHHH-----SSSEEEEEEEGGGGGHHHHH
T ss_pred hcCCCEEEEecCCcch------hhHHHHHH-HHHHhhhc-----CCccceEEEecccChHHHHH
Confidence 5455789988765421 11111122 22333333 23346777777766666653
No 409
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=96.27 E-value=0.0037 Score=62.37 Aligned_cols=28 Identities=46% Similarity=0.780 Sum_probs=25.2
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 001707 768 ILLFGPPGTGKTLLAKALATEAGANFIS 795 (1023)
Q Consensus 768 VLL~GPPGTGKT~LArAIA~elg~~fi~ 795 (1023)
++|.|+||+|||++|+.++..++..++.
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~~~i~ 29 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGAPFID 29 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCCEEEe
Confidence 7899999999999999999998876654
No 410
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=96.26 E-value=0.044 Score=55.09 Aligned_cols=24 Identities=29% Similarity=0.488 Sum_probs=18.5
Q ss_pred ceEEEEcCCCChHHH-HHHHHHHHh
Q 001707 766 KGILLFGPPGTGKTL-LAKALATEA 789 (1023)
Q Consensus 766 ~gVLL~GPPGTGKT~-LArAIA~el 789 (1023)
..+++.||+|+|||. ++..+....
T Consensus 25 ~~~~i~~~~GsGKT~~~~~~~~~~~ 49 (201)
T smart00487 25 RDVILAAPTGSGKTLAALLPALEAL 49 (201)
T ss_pred CcEEEECCCCCchhHHHHHHHHHHh
Confidence 469999999999999 555555544
No 411
>PRK08233 hypothetical protein; Provisional
Probab=96.25 E-value=0.03 Score=57.30 Aligned_cols=32 Identities=25% Similarity=0.287 Sum_probs=25.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC-CcEEEEe
Q 001707 766 KGILLFGPPGTGKTLLAKALATEAG-ANFISIT 797 (1023)
Q Consensus 766 ~gVLL~GPPGTGKT~LArAIA~elg-~~fi~vs 797 (1023)
.-|.|.|+||+||||+|+.|+..++ .+++.++
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d 36 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHKLKNSKALYFD 36 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhCCCCceEEEC
Confidence 3578899999999999999999985 4444443
No 412
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=96.24 E-value=0.0097 Score=69.82 Aligned_cols=63 Identities=25% Similarity=0.322 Sum_probs=39.8
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEeccccchhhhhhHHHHHHHHHHHHhhcCCeEEEeccchhhh
Q 001707 763 RPCKGILLFGPPGTGKTLLAKALATEA----GANFISITGSTLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLL 837 (1023)
Q Consensus 763 ~p~~gVLL~GPPGTGKT~LArAIA~el----g~~fi~vs~seL~s~~~ge~e~~I~~lF~~A~k~~PsIIfIDEID~L~ 837 (1023)
....++++.||+|||||+|+.+++.+. | -.++.+.|+.. ... ..... -....+|+|||+..+.
T Consensus 207 e~~~Nli~lGp~GTGKThla~~l~~~~a~~sG---~f~T~a~Lf~~----L~~---~~lg~--v~~~DlLI~DEvgylp 273 (449)
T TIGR02688 207 EPNYNLIELGPKGTGKSYIYNNLSPYVILISG---GTITVAKLFYN----IST---RQIGL--VGRWDVVAFDEVATLK 273 (449)
T ss_pred hcCCcEEEECCCCCCHHHHHHHHhHHHHHHcC---CcCcHHHHHHH----HHH---HHHhh--hccCCEEEEEcCCCCc
Confidence 344689999999999999999998772 4 22223333222 111 11111 1245899999998864
No 413
>PRK05973 replicative DNA helicase; Provisional
Probab=96.24 E-value=0.041 Score=60.32 Aligned_cols=38 Identities=45% Similarity=0.525 Sum_probs=30.3
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecc
Q 001707 762 LRPCKGILLFGPPGTGKTLLAKALATEA---GANFISITGS 799 (1023)
Q Consensus 762 i~p~~gVLL~GPPGTGKT~LArAIA~el---g~~fi~vs~s 799 (1023)
+.+..-+||.|+||+|||+++-.+|.+. |.+++.++..
T Consensus 61 l~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlE 101 (237)
T PRK05973 61 LKPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLE 101 (237)
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEe
Confidence 4666789999999999999999887755 7677666644
No 414
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=96.23 E-value=0.0097 Score=64.42 Aligned_cols=71 Identities=25% Similarity=0.376 Sum_probs=46.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC--------CcEEEEec-cccchhhhh-------------hHHHHHHHHHHHHhhc
Q 001707 766 KGILLFGPPGTGKTLLAKALATEAG--------ANFISITG-STLTSKWFG-------------DAEKLTKALFSFASKL 823 (1023)
Q Consensus 766 ~gVLL~GPPGTGKT~LArAIA~elg--------~~fi~vs~-seL~s~~~g-------------e~e~~I~~lF~~A~k~ 823 (1023)
.+.||.||||||||+|.+-||+-+. ..+..++- +++.+...| ..+-.-..+....+.+
T Consensus 138 lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~cpk~~gmmmaIrsm 217 (308)
T COG3854 138 LNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDPCPKAEGMMMAIRSM 217 (308)
T ss_pred eeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhhhhhhhcccchHHHHHHHHHHhc
Confidence 4689999999999999999998772 22333433 222221111 1222233445556788
Q ss_pred CCeEEEeccchhh
Q 001707 824 APVIIFVDEVDSL 836 (1023)
Q Consensus 824 ~PsIIfIDEID~L 836 (1023)
.|-||++|||...
T Consensus 218 ~PEViIvDEIGt~ 230 (308)
T COG3854 218 SPEVIIVDEIGTE 230 (308)
T ss_pred CCcEEEEeccccH
Confidence 9999999999764
No 415
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.20 E-value=0.032 Score=59.92 Aligned_cols=22 Identities=27% Similarity=0.508 Sum_probs=20.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHH
Q 001707 766 KGILLFGPPGTGKTLLAKALAT 787 (1023)
Q Consensus 766 ~gVLL~GPPGTGKT~LArAIA~ 787 (1023)
+.++|.||.|+|||++.+.++.
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 6799999999999999999983
No 416
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=96.20 E-value=0.0038 Score=65.03 Aligned_cols=32 Identities=34% Similarity=0.525 Sum_probs=29.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001707 766 KGILLFGPPGTGKTLLAKALATEAGANFISIT 797 (1023)
Q Consensus 766 ~gVLL~GPPGTGKT~LArAIA~elg~~fi~vs 797 (1023)
++|+|.|++|+|||++.+++|+.++.+|+..+
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D 34 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTD 34 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcccch
Confidence 46999999999999999999999999998765
No 417
>PRK10436 hypothetical protein; Provisional
Probab=96.19 E-value=0.012 Score=70.26 Aligned_cols=102 Identities=17% Similarity=0.229 Sum_probs=63.7
Q ss_pred ccCCCCCCcccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC---CcEEE
Q 001707 719 VVPPGEIGVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAG---ANFIS 795 (1023)
Q Consensus 719 ii~~~e~~vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~elg---~~fi~ 795 (1023)
+++......+++++|-.....+.+++++.. +..-||+.||+|+|||++..++..++. .+++.
T Consensus 187 ll~~~~~~~~L~~LG~~~~~~~~l~~~~~~---------------~~GliLvtGpTGSGKTTtL~a~l~~~~~~~~~i~T 251 (462)
T PRK10436 187 LLQQVQQALDLETLGMTPAQLAQFRQALQQ---------------PQGLILVTGPTGSGKTVTLYSALQTLNTAQINICS 251 (462)
T ss_pred EeccccCCCCHHHcCcCHHHHHHHHHHHHh---------------cCCeEEEECCCCCChHHHHHHHHHhhCCCCCEEEE
Confidence 344333345788998888888888876632 223489999999999999988877763 34444
Q ss_pred Ee-ccccchh-----hhh-hHHHHHHHHHHHHhhcCCeEEEeccchh
Q 001707 796 IT-GSTLTSK-----WFG-DAEKLTKALFSFASKLAPVIIFVDEVDS 835 (1023)
Q Consensus 796 vs-~seL~s~-----~~g-e~e~~I~~lF~~A~k~~PsIIfIDEID~ 835 (1023)
+- +.++.-. .+. ............+-+..|.||+|.||-.
T Consensus 252 iEDPvE~~l~gi~Q~~v~~~~g~~f~~~lr~~LR~dPDvI~vGEIRD 298 (462)
T PRK10436 252 VEDPVEIPLAGINQTQIHPKAGLTFQRVLRALLRQDPDVIMVGEIRD 298 (462)
T ss_pred ecCCccccCCCcceEeeCCccCcCHHHHHHHHhcCCCCEEEECCCCC
Confidence 32 1111100 011 1112234455556678999999999853
No 418
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=96.18 E-value=0.0042 Score=64.12 Aligned_cols=34 Identities=24% Similarity=0.363 Sum_probs=29.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecc
Q 001707 766 KGILLFGPPGTGKTLLAKALATEAGANFISITGS 799 (1023)
Q Consensus 766 ~gVLL~GPPGTGKT~LArAIA~elg~~fi~vs~s 799 (1023)
+-|+|.|+||+|||++|++++..++.+++.++..
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D 36 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLAEPWLHFGVD 36 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhCCCccccCcc
Confidence 4589999999999999999999998877765443
No 419
>PRK13764 ATPase; Provisional
Probab=96.17 E-value=0.0095 Score=72.96 Aligned_cols=70 Identities=24% Similarity=0.323 Sum_probs=41.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhC---CcEEEEe-cccc-----chhhhhhHHHHHHHHHHHHhhcCCeEEEeccchh
Q 001707 765 CKGILLFGPPGTGKTLLAKALATEAG---ANFISIT-GSTL-----TSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDS 835 (1023)
Q Consensus 765 ~~gVLL~GPPGTGKT~LArAIA~elg---~~fi~vs-~seL-----~s~~~ge~e~~I~~lF~~A~k~~PsIIfIDEID~ 835 (1023)
..+||++||||+|||+++++++.++. ..+..+. ..++ ...+.. ...........+-+..|.+|++||+-.
T Consensus 257 ~~~ILIsG~TGSGKTTll~AL~~~i~~~~riV~TiEDp~El~~~~~i~q~~~-~~~~~~~~~~~lLR~rPD~IivGEiRd 335 (602)
T PRK13764 257 AEGILIAGAPGAGKSTFAQALAEFYADMGKIVKTMESPRDLQVPPEITQYSK-LEGSMEETADILLLVRPDYTIYDEMRK 335 (602)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhhCCCEEEEECCCccccCCCcceEEee-ccccHHHHHHHHHhhCCCEEEECCCCC
Confidence 35799999999999999999998874 3332321 1111 111110 000111222223467899999999853
No 420
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=96.17 E-value=0.011 Score=66.67 Aligned_cols=69 Identities=33% Similarity=0.401 Sum_probs=45.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC-----CcEEEEec-cccc-------hhhhhhHHHHHHHHHHHHhhcCCeEEEecc
Q 001707 766 KGILLFGPPGTGKTLLAKALATEAG-----ANFISITG-STLT-------SKWFGDAEKLTKALFSFASKLAPVIIFVDE 832 (1023)
Q Consensus 766 ~gVLL~GPPGTGKT~LArAIA~elg-----~~fi~vs~-seL~-------s~~~ge~e~~I~~lF~~A~k~~PsIIfIDE 832 (1023)
.++|+.||+|+|||+++++++.... ..++.+.- .++. .-...........++..+-+..|..|++.|
T Consensus 133 ~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~~~~v~~~~~~~~~~~~~~l~~aLR~~pD~iivGE 212 (299)
T TIGR02782 133 KNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAAPNVVQLRTSDDAISMTRLLKATLRLRPDRIIVGE 212 (299)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCCCCEEEEEecCCCCCHHHHHHHHhcCCCCEEEEec
Confidence 5799999999999999999998862 33333321 1111 000111111456677778889999999999
Q ss_pred ch
Q 001707 833 VD 834 (1023)
Q Consensus 833 ID 834 (1023)
+-
T Consensus 213 iR 214 (299)
T TIGR02782 213 VR 214 (299)
T ss_pred cC
Confidence 95
No 421
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=96.13 E-value=0.0056 Score=62.54 Aligned_cols=32 Identities=34% Similarity=0.575 Sum_probs=28.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001707 766 KGILLFGPPGTGKTLLAKALATEAGANFISIT 797 (1023)
Q Consensus 766 ~gVLL~GPPGTGKT~LArAIA~elg~~fi~vs 797 (1023)
..++|.|++|+|||++++.+|..+|++|+..+
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d~D 34 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALGYRFVDTD 34 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEEcc
Confidence 35899999999999999999999999988653
No 422
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.12 E-value=0.093 Score=59.92 Aligned_cols=36 Identities=31% Similarity=0.347 Sum_probs=28.1
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecc
Q 001707 764 PCKGILLFGPPGTGKTLLAKALATEA---GANFISITGS 799 (1023)
Q Consensus 764 p~~gVLL~GPPGTGKT~LArAIA~el---g~~fi~vs~s 799 (1023)
++.-++|.||+|+|||+++..+|..+ +..+..+++.
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D 151 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGD 151 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecC
Confidence 45678899999999999999999877 4555555543
No 423
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=96.12 E-value=0.0042 Score=62.98 Aligned_cols=28 Identities=46% Similarity=0.781 Sum_probs=24.9
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 001707 768 ILLFGPPGTGKTLLAKALATEAGANFIS 795 (1023)
Q Consensus 768 VLL~GPPGTGKT~LArAIA~elg~~fi~ 795 (1023)
|+|.||+|+|||++|+.++..++..++.
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v~ 28 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFIE 28 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEEe
Confidence 4789999999999999999999877654
No 424
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.12 E-value=0.06 Score=63.06 Aligned_cols=35 Identities=31% Similarity=0.340 Sum_probs=27.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecc
Q 001707 765 CKGILLFGPPGTGKTLLAKALATEA---GANFISITGS 799 (1023)
Q Consensus 765 ~~gVLL~GPPGTGKT~LArAIA~el---g~~fi~vs~s 799 (1023)
++.|+|.||+|+|||+++..||..+ +..+..+++.
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aD 278 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTD 278 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecC
Confidence 4679999999999999999999877 4455555543
No 425
>PTZ00088 adenylate kinase 1; Provisional
Probab=96.11 E-value=0.0057 Score=66.55 Aligned_cols=31 Identities=35% Similarity=0.652 Sum_probs=27.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001707 766 KGILLFGPPGTGKTLLAKALATEAGANFISI 796 (1023)
Q Consensus 766 ~gVLL~GPPGTGKT~LArAIA~elg~~fi~v 796 (1023)
..|+|.||||+|||++|+.+|+.++++++.+
T Consensus 7 mrIvl~G~PGsGK~T~a~~La~~~g~~~is~ 37 (229)
T PTZ00088 7 LKIVLFGAPGVGKGTFAEILSKKENLKHINM 37 (229)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEEC
Confidence 4599999999999999999999999877764
No 426
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.10 E-value=0.0054 Score=64.24 Aligned_cols=32 Identities=44% Similarity=0.759 Sum_probs=25.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccc
Q 001707 767 GILLFGPPGTGKTLLAKALATEAGANFISITGST 800 (1023)
Q Consensus 767 gVLL~GPPGTGKT~LArAIA~elg~~fi~vs~se 800 (1023)
.|+|.||||+||||+|+.||..++++ .++...
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~i~--hlstgd 33 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLGLP--HLDTGD 33 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCc--EEcHhH
Confidence 58999999999999999999995544 444333
No 427
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.10 E-value=0.012 Score=69.95 Aligned_cols=102 Identities=21% Similarity=0.231 Sum_probs=66.3
Q ss_pred cccccCCCCCCcccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEE-
Q 001707 716 VSAVVPPGEIGVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFI- 794 (1023)
Q Consensus 716 ~~~ii~~~e~~vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~elg~~fi- 794 (1023)
...+++......+|+++|......+.+..++.. |..-+|+.||.|+|||+...++..+++.+..
T Consensus 224 VlRil~~~~~~l~l~~Lg~~~~~~~~~~~~~~~---------------p~GliLvTGPTGSGKTTTLY~~L~~ln~~~~n 288 (500)
T COG2804 224 VLRILDKDQVILDLEKLGMSPFQLARLLRLLNR---------------PQGLILVTGPTGSGKTTTLYAALSELNTPERN 288 (500)
T ss_pred EEEEeccccccCCHHHhCCCHHHHHHHHHHHhC---------------CCeEEEEeCCCCCCHHHHHHHHHHHhcCCCce
Confidence 334555555567899999999999999887733 2233788899999999999999999865433
Q ss_pred --EEec------cccc----hhhhhhHHHHHHHHHHHHhhcCCeEEEeccchh
Q 001707 795 --SITG------STLT----SKWFGDAEKLTKALFSFASKLAPVIIFVDEVDS 835 (1023)
Q Consensus 795 --~vs~------seL~----s~~~ge~e~~I~~lF~~A~k~~PsIIfIDEID~ 835 (1023)
.+.- +.+. +.-.| -.....+...-++.|.||+|.||-.
T Consensus 289 I~TiEDPVE~~~~gI~Q~qVN~k~g---ltfa~~LRa~LRqDPDvImVGEIRD 338 (500)
T COG2804 289 IITIEDPVEYQLPGINQVQVNPKIG---LTFARALRAILRQDPDVIMVGEIRD 338 (500)
T ss_pred EEEeeCCeeeecCCcceeecccccC---CCHHHHHHHHhccCCCeEEEeccCC
Confidence 3211 1111 11111 1122333444567999999999964
No 428
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=96.09 E-value=0.0089 Score=68.67 Aligned_cols=69 Identities=20% Similarity=0.271 Sum_probs=43.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC----CcEEEEec-cccc---------hhhhhhHHHHHHHHHHHHhhcCCeEEEec
Q 001707 766 KGILLFGPPGTGKTLLAKALATEAG----ANFISITG-STLT---------SKWFGDAEKLTKALFSFASKLAPVIIFVD 831 (1023)
Q Consensus 766 ~gVLL~GPPGTGKT~LArAIA~elg----~~fi~vs~-seL~---------s~~~ge~e~~I~~lF~~A~k~~PsIIfID 831 (1023)
..+||.||+|+|||+++++++..+. ..++.+.- .++. ....+.........+..+-+..|.+|++|
T Consensus 123 g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~~~~~~~i~q~evg~~~~~~~~~l~~~lr~~pd~i~vg 202 (343)
T TIGR01420 123 GLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVHRNKRSLINQREVGLDTLSFANALRAALREDPDVILIG 202 (343)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhccCccceEEccccCCCCcCHHHHHHHhhccCCCEEEEe
Confidence 4589999999999999999998764 23333321 1111 00112111223445556667899999999
Q ss_pred cch
Q 001707 832 EVD 834 (1023)
Q Consensus 832 EID 834 (1023)
|+-
T Consensus 203 Eir 205 (343)
T TIGR01420 203 EMR 205 (343)
T ss_pred CCC
Confidence 994
No 429
>KOG0479 consensus DNA replication licensing factor, MCM3 component [Replication, recombination and repair]
Probab=96.06 E-value=0.016 Score=69.35 Aligned_cols=166 Identities=23% Similarity=0.272 Sum_probs=94.7
Q ss_pred cccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEE---------EEecccc
Q 001707 731 DIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFI---------SITGSTL 801 (1023)
Q Consensus 731 DIgGle~vk~~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~elg~~fi---------~vs~seL 801 (1023)
.|.|.+.+|+.+.-++.--. ......+..++.--+|||.|.|-+-|+.|.+.+.+-+...+- -+.++--
T Consensus 302 SI~GH~~vKkAillLLlGGv--Ek~L~NGshlRGDINiLlvGDPSvAKSQLLRyVLntAplAI~TTGRGSSGVGLTAAVT 379 (818)
T KOG0479|consen 302 SIYGHDYVKKAILLLLLGGV--EKNLENGSHLRGDINILLVGDPSVAKSQLLRYVLNTAPLAIATTGRGSSGVGLTAAVT 379 (818)
T ss_pred ccccHHHHHHHHHHHHhccc--eeccCCCceeccceeEEEecCchHHHHHHHHHHHhcccccccccCCCCCCccceeEEe
Confidence 36789999999877663321 112334444555678999999999999999999876532211 1111110
Q ss_pred chhhhhhHHHHHH-HHHHHHhhcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhh------cCccCCCCceEEEE
Q 001707 802 TSKWFGDAEKLTK-ALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAW------DGLRSKESQKILIL 874 (1023)
Q Consensus 802 ~s~~~ge~e~~I~-~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~L------dgl~~~~~~~VlVI 874 (1023)
...-. .|..+. .....| ...|++|||+|.+..- .+..+.+.|.+- -|+...-+.+.-||
T Consensus 380 tD~eT--GERRLEAGAMVLA---DRGVVCIDEFDKMsDi---------DRvAIHEVMEQqtVTIaKAGIHasLNARCSVl 445 (818)
T KOG0479|consen 380 TDQET--GERRLEAGAMVLA---DRGVVCIDEFDKMSDI---------DRVAIHEVMEQQTVTIAKAGIHASLNARCSVL 445 (818)
T ss_pred ecccc--chhhhhcCceEEc---cCceEEehhcccccch---------hHHHHHHHHhcceEEeEeccchhhhccceeee
Confidence 11111 122221 011111 3479999999998422 122233333221 25555556788999
Q ss_pred EecCCCCC-------------CcHHHHhhcCCceee-cCCCHHHHHHHHHHH
Q 001707 875 GATNRPFD-------------LDDAVIRRLPRRIYV-DLPDAENRMKILRIF 912 (1023)
Q Consensus 875 aTTN~p~~-------------Ld~aLlrRFd~~I~V-~lPd~eeR~~ILk~~ 912 (1023)
|++|+.+. |+..|++||+..+.+ .--+...-..|-.+.
T Consensus 446 AAANPvyG~Yd~~k~P~eNIgLpDSLLSRFDLlFv~lD~~d~~~D~~iSeHV 497 (818)
T KOG0479|consen 446 AAANPVYGQYDQSKTPMENIGLPDSLLSRFDLLFVVLDDIDADIDRMISEHV 497 (818)
T ss_pred eecCccccccCCCCChhhccCCcHHHHhhhcEEEEEeccccchHHHHHHHHH
Confidence 99997643 788999999865443 333443333443333
No 430
>PRK06547 hypothetical protein; Provisional
Probab=96.05 E-value=0.0063 Score=63.31 Aligned_cols=34 Identities=35% Similarity=0.523 Sum_probs=29.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001707 764 PCKGILLFGPPGTGKTLLAKALATEAGANFISIT 797 (1023)
Q Consensus 764 p~~gVLL~GPPGTGKT~LArAIA~elg~~fi~vs 797 (1023)
++.-|+|.|++|+|||++|+.++..++.+++.++
T Consensus 14 ~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d 47 (172)
T PRK06547 14 GMITVLIDGRSGSGKTTLAGALAARTGFQLVHLD 47 (172)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhCCCeeccc
Confidence 4457899999999999999999999988877654
No 431
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.05 E-value=0.0066 Score=62.43 Aligned_cols=30 Identities=30% Similarity=0.522 Sum_probs=26.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 001707 766 KGILLFGPPGTGKTLLAKALATEAGANFIS 795 (1023)
Q Consensus 766 ~gVLL~GPPGTGKT~LArAIA~elg~~fi~ 795 (1023)
.-|+|.||||+|||++|+.++..+|+.++.
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~~~~g~~~~~ 33 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIVEKYGFTHLS 33 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCcEEe
Confidence 358999999999999999999999876554
No 432
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=96.05 E-value=0.014 Score=71.46 Aligned_cols=95 Identities=21% Similarity=0.234 Sum_probs=61.0
Q ss_pred CcccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC---CcEEEEecc-cc
Q 001707 726 GVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAG---ANFISITGS-TL 801 (1023)
Q Consensus 726 ~vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gli~p~~gVLL~GPPGTGKT~LArAIA~elg---~~fi~vs~s-eL 801 (1023)
..+++++|-.....+.+.+++.. +...||++||+|+|||++..++..+++ .+++.+--+ ++
T Consensus 292 ~~~l~~lg~~~~~~~~l~~~~~~---------------~~Glilv~G~tGSGKTTtl~a~l~~~~~~~~~i~tiEdpvE~ 356 (564)
T TIGR02538 292 QLDIDKLGFEPDQKALFLEAIHK---------------PQGMVLVTGPTGSGKTVSLYTALNILNTEEVNISTAEDPVEI 356 (564)
T ss_pred cCCHHHcCCCHHHHHHHHHHHHh---------------cCCeEEEECCCCCCHHHHHHHHHHhhCCCCceEEEecCCcee
Confidence 35688888888888888877632 223489999999999999988888774 334433211 11
Q ss_pred -----chhhhh-hHHHHHHHHHHHHhhcCCeEEEeccchh
Q 001707 802 -----TSKWFG-DAEKLTKALFSFASKLAPVIIFVDEVDS 835 (1023)
Q Consensus 802 -----~s~~~g-e~e~~I~~lF~~A~k~~PsIIfIDEID~ 835 (1023)
....+. ............+-+..|.||+|.||-.
T Consensus 357 ~~~~~~q~~v~~~~g~~~~~~l~~~LR~dPDvI~vGEiRd 396 (564)
T TIGR02538 357 NLPGINQVNVNPKIGLTFAAALRSFLRQDPDIIMVGEIRD 396 (564)
T ss_pred cCCCceEEEeccccCCCHHHHHHHHhccCCCEEEeCCCCC
Confidence 110011 1112244455566778999999999964
No 433
>PRK14528 adenylate kinase; Provisional
Probab=96.04 E-value=0.006 Score=63.93 Aligned_cols=31 Identities=42% Similarity=0.634 Sum_probs=27.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001707 766 KGILLFGPPGTGKTLLAKALATEAGANFISI 796 (1023)
Q Consensus 766 ~gVLL~GPPGTGKT~LArAIA~elg~~fi~v 796 (1023)
+.|+|.||||+|||++|+.+|..++++++.+
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~~~~~is~ 32 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERLSIPQIST 32 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeeeC
Confidence 3589999999999999999999999887653
No 434
>PRK13946 shikimate kinase; Provisional
Probab=96.00 E-value=0.0058 Score=63.79 Aligned_cols=32 Identities=31% Similarity=0.561 Sum_probs=29.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001707 766 KGILLFGPPGTGKTLLAKALATEAGANFISIT 797 (1023)
Q Consensus 766 ~gVLL~GPPGTGKT~LArAIA~elg~~fi~vs 797 (1023)
+.|+|.|++|+|||++++.+|..+|++|+..+
T Consensus 11 ~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D 42 (184)
T PRK13946 11 RTVVLVGLMGAGKSTVGRRLATMLGLPFLDAD 42 (184)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCeECcC
Confidence 57999999999999999999999999998765
No 435
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=96.00 E-value=0.023 Score=58.91 Aligned_cols=76 Identities=26% Similarity=0.368 Sum_probs=43.3
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh--C-----------CcEEEEeccccchh----h---hh-----h----------
Q 001707 764 PCKGILLFGPPGTGKTLLAKALATEA--G-----------ANFISITGSTLTSK----W---FG-----D---------- 808 (1023)
Q Consensus 764 p~~gVLL~GPPGTGKT~LArAIA~el--g-----------~~fi~vs~seL~s~----~---~g-----e---------- 808 (1023)
+..-++|+||||+|||+++..+|..+ | .+++.++...-... + .. .
T Consensus 31 ~g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~ 110 (193)
T PF13481_consen 31 RGELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSESQIARRLRALLQDYDDDANLFFVDLSNW 110 (193)
T ss_dssp TTSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-HHHHHHHHHHHHTTS-HHHHHHHHHH--E
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCHHHHHHHHHHHhcccCCccceEEeecccc
Confidence 33458999999999999999988765 2 35666655332100 0 00 0
Q ss_pred --------------HHHHHHHHHHHHhh-cCCeEEEeccchhhhhc
Q 001707 809 --------------AEKLTKALFSFASK-LAPVIIFVDEVDSLLGA 839 (1023)
Q Consensus 809 --------------~e~~I~~lF~~A~k-~~PsIIfIDEID~L~~~ 839 (1023)
....+..+...+.. ..+.+|+||.+..+...
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lvviD~l~~~~~~ 156 (193)
T PF13481_consen 111 GCIRLFEPDSGGPLLDEDLEELEAALKELYGPDLVVIDPLQSLHDG 156 (193)
T ss_dssp -EE---TTS---TTSHHHHHHHHHHHTT----SEEEEE-GGGG--S
T ss_pred ccceeeecccccccchHHHHHHHHHHhhcCCCcEEEEcCHHHHhcC
Confidence 01223445555556 57899999999999865
No 436
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=96.00 E-value=0.0098 Score=67.38 Aligned_cols=38 Identities=29% Similarity=0.487 Sum_probs=33.2
Q ss_pred CCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001707 760 NLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISIT 797 (1023)
Q Consensus 760 gli~p~~gVLL~GPPGTGKT~LArAIA~elg~~fi~vs 797 (1023)
....+...|+|.|+||||||++++.+|..+|++|+.++
T Consensus 128 ~~~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D 165 (309)
T PRK08154 128 RRAARRRRIALIGLRGAGKSTLGRMLAARLGVPFVELN 165 (309)
T ss_pred hhccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHH
Confidence 33567788999999999999999999999999999543
No 437
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=95.97 E-value=0.021 Score=57.82 Aligned_cols=34 Identities=32% Similarity=0.567 Sum_probs=28.3
Q ss_pred EEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccc
Q 001707 768 ILLFGPPGTGKTLLAKALATEA---GANFISITGSTL 801 (1023)
Q Consensus 768 VLL~GPPGTGKT~LArAIA~el---g~~fi~vs~seL 801 (1023)
|+|.|+||+|||++|+.++..+ +.+.+.++...+
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~ 38 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNV 38 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHH
Confidence 7899999999999999999998 667776665433
No 438
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=95.96 E-value=0.006 Score=62.83 Aligned_cols=28 Identities=43% Similarity=0.710 Sum_probs=26.6
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 001707 768 ILLFGPPGTGKTLLAKALATEAGANFIS 795 (1023)
Q Consensus 768 VLL~GPPGTGKT~LArAIA~elg~~fi~ 795 (1023)
|-+.||||||||++|+.||.++|.++++
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~gl~~vs 30 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLGLKLVS 30 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhCCceee
Confidence 6789999999999999999999999986
No 439
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=95.95 E-value=0.053 Score=63.18 Aligned_cols=101 Identities=21% Similarity=0.260 Sum_probs=71.7
Q ss_pred CCCCCCCceEEEEcCCCChHHHHHHHHHHHh--CCcEEEEeccccchhhh--------------hhHHHHHHHHHHHHhh
Q 001707 759 GNLLRPCKGILLFGPPGTGKTLLAKALATEA--GANFISITGSTLTSKWF--------------GDAEKLTKALFSFASK 822 (1023)
Q Consensus 759 ~gli~p~~gVLL~GPPGTGKT~LArAIA~el--g~~fi~vs~seL~s~~~--------------ge~e~~I~~lF~~A~k 822 (1023)
+| +-|..-+||-|.||.|||+|.-.+|..+ ..++++++..+-..... --.+..+..+......
T Consensus 88 GG-~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~~vLYVsGEES~~QiklRA~RL~~~~~~l~l~aEt~~e~I~~~l~~ 166 (456)
T COG1066 88 GG-LVPGSVILIGGDPGIGKSTLLLQVAARLAKRGKVLYVSGEESLQQIKLRADRLGLPTNNLYLLAETNLEDIIAELEQ 166 (456)
T ss_pred CC-cccccEEEEccCCCCCHHHHHHHHHHHHHhcCcEEEEeCCcCHHHHHHHHHHhCCCccceEEehhcCHHHHHHHHHh
Confidence 44 4566678999999999999988888776 23789998876433221 1246667888888888
Q ss_pred cCCeEEEeccchhhhhccC--CCchhHHHHHHHHHHHhhh
Q 001707 823 LAPVIIFVDEVDSLLGARG--GAFEHEATRRMRNEFMSAW 860 (1023)
Q Consensus 823 ~~PsIIfIDEID~L~~~r~--~~~~~e~~~ril~~LL~~L 860 (1023)
.+|.+++||-|..+....- .++.....+...++|+..-
T Consensus 167 ~~p~lvVIDSIQT~~s~~~~SapGsVsQVRe~t~~L~~~A 206 (456)
T COG1066 167 EKPDLVVIDSIQTLYSEEITSAPGSVSQVREVAAELMRLA 206 (456)
T ss_pred cCCCEEEEeccceeecccccCCCCcHHHHHHHHHHHHHHH
Confidence 9999999999999976542 2233445566666666543
No 440
>PLN02200 adenylate kinase family protein
Probab=95.95 E-value=0.0077 Score=65.67 Aligned_cols=39 Identities=18% Similarity=0.326 Sum_probs=31.1
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccch
Q 001707 763 RPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTS 803 (1023)
Q Consensus 763 ~p~~gVLL~GPPGTGKT~LArAIA~elg~~fi~vs~seL~s 803 (1023)
+.+..|+|.||||+|||++|+.+|..+|++. +++.+++-
T Consensus 41 ~~~~ii~I~G~PGSGKsT~a~~La~~~g~~h--is~gdllR 79 (234)
T PLN02200 41 KTPFITFVLGGPGSGKGTQCEKIVETFGFKH--LSAGDLLR 79 (234)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCeE--EEccHHHH
Confidence 3456789999999999999999999998764 55555543
No 441
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=95.94 E-value=0.0074 Score=62.55 Aligned_cols=33 Identities=30% Similarity=0.601 Sum_probs=29.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEec
Q 001707 766 KGILLFGPPGTGKTLLAKALATEAGANFISITG 798 (1023)
Q Consensus 766 ~gVLL~GPPGTGKT~LArAIA~elg~~fi~vs~ 798 (1023)
..|+|.||+|+|||++++.+|..++++++..+.
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~ 37 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQ 37 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHHcCCcEEECCc
Confidence 469999999999999999999999999887653
No 442
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=95.93 E-value=0.048 Score=61.92 Aligned_cols=41 Identities=22% Similarity=0.333 Sum_probs=31.2
Q ss_pred CCCCCCCceEEEEcCCCChHHHHHHHHHHHh---------CCcEEEEeccc
Q 001707 759 GNLLRPCKGILLFGPPGTGKTLLAKALATEA---------GANFISITGST 800 (1023)
Q Consensus 759 ~gli~p~~gVLL~GPPGTGKT~LArAIA~el---------g~~fi~vs~se 800 (1023)
+| +....-++|+||||+|||.++..+|... +..+++++..+
T Consensus 97 GG-i~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~ 146 (317)
T PRK04301 97 GG-IETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEG 146 (317)
T ss_pred CC-ccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCC
Confidence 44 4556678999999999999999998764 23677777654
No 443
>PRK02496 adk adenylate kinase; Provisional
Probab=95.92 E-value=0.0069 Score=62.80 Aligned_cols=30 Identities=37% Similarity=0.579 Sum_probs=26.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001707 767 GILLFGPPGTGKTLLAKALATEAGANFISI 796 (1023)
Q Consensus 767 gVLL~GPPGTGKT~LArAIA~elg~~fi~v 796 (1023)
.++|.||||+|||++|+.||..++++.+.+
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~~~~~i~~ 32 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHLHIPHIST 32 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEEh
Confidence 489999999999999999999999877654
No 444
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=95.91 E-value=0.014 Score=67.17 Aligned_cols=23 Identities=57% Similarity=0.677 Sum_probs=21.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh
Q 001707 767 GILLFGPPGTGKTLLAKALATEA 789 (1023)
Q Consensus 767 gVLL~GPPGTGKT~LArAIA~el 789 (1023)
-+++.|.||||||.||-.+|.++
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l 25 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKEL 25 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHh
Confidence 47899999999999999999988
No 445
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=95.91 E-value=0.055 Score=57.16 Aligned_cols=22 Identities=32% Similarity=0.545 Sum_probs=20.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHH
Q 001707 766 KGILLFGPPGTGKTLLAKALAT 787 (1023)
Q Consensus 766 ~gVLL~GPPGTGKT~LArAIA~ 787 (1023)
+.++|.||.|+|||+|.+.++.
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~~ 50 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLGL 50 (200)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 4599999999999999999983
No 446
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=95.89 E-value=0.056 Score=61.00 Aligned_cols=41 Identities=27% Similarity=0.416 Sum_probs=31.3
Q ss_pred CCCCCCCceEEEEcCCCChHHHHHHHHHHHh---------CCcEEEEeccc
Q 001707 759 GNLLRPCKGILLFGPPGTGKTLLAKALATEA---------GANFISITGST 800 (1023)
Q Consensus 759 ~gli~p~~gVLL~GPPGTGKT~LArAIA~el---------g~~fi~vs~se 800 (1023)
+| +....-++|+||||+|||+++-.+|... +..+++++..+
T Consensus 90 GG-i~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~ 139 (310)
T TIGR02236 90 GG-IETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTEN 139 (310)
T ss_pred CC-CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCC
Confidence 45 4455668999999999999999998764 23677777655
No 447
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=95.89 E-value=0.069 Score=64.24 Aligned_cols=79 Identities=24% Similarity=0.263 Sum_probs=56.5
Q ss_pred CCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccchhhh----------------------------h
Q 001707 759 GNLLRPCKGILLFGPPGTGKTLLAKALATEA---GANFISITGSTLTSKWF----------------------------G 807 (1023)
Q Consensus 759 ~gli~p~~gVLL~GPPGTGKT~LArAIA~el---g~~fi~vs~seL~s~~~----------------------------g 807 (1023)
+| +.+...+||.||||+|||+|+-.++... |-+.++++..+-..... .
T Consensus 258 GG-~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~~~~lg~~~~~~~~~g~l~~~~~~p~~~ 336 (484)
T TIGR02655 258 GG-FFKDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRNAYSWGIDFEEMEQQGLLKIICAYPESA 336 (484)
T ss_pred CC-ccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHHHHHcCCChHHHhhCCcEEEEEcccccC
Confidence 45 5666789999999999999999998765 55666665543211110 0
Q ss_pred hHHHHHHHHHHHHhhcCCeEEEeccchhhhh
Q 001707 808 DAEKLTKALFSFASKLAPVIIFVDEVDSLLG 838 (1023)
Q Consensus 808 e~e~~I~~lF~~A~k~~PsIIfIDEID~L~~ 838 (1023)
..+..+..+........|.+|+||-+..+..
T Consensus 337 ~~~~~~~~i~~~i~~~~~~~vvIDsi~~~~~ 367 (484)
T TIGR02655 337 GLEDHLQIIKSEIADFKPARIAIDSLSALAR 367 (484)
T ss_pred ChHHHHHHHHHHHHHcCCCEEEEcCHHHHHH
Confidence 1255667777777788899999999998754
No 448
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=95.89 E-value=0.017 Score=66.14 Aligned_cols=71 Identities=28% Similarity=0.346 Sum_probs=47.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCC--cEEEE-eccccch-----------hh--hhhHHHHHHHHHHHHhhcCCeEE
Q 001707 765 CKGILLFGPPGTGKTLLAKALATEAGA--NFISI-TGSTLTS-----------KW--FGDAEKLTKALFSFASKLAPVII 828 (1023)
Q Consensus 765 ~~gVLL~GPPGTGKT~LArAIA~elg~--~fi~v-s~seL~s-----------~~--~ge~e~~I~~lF~~A~k~~PsII 828 (1023)
..+||+.|++|+|||+++++++.+... .++.+ +..++.- .. .+...-....+...+.+..|.+|
T Consensus 160 ~~nili~G~tgSGKTTll~aL~~~ip~~~ri~tiEd~~El~l~~~~n~~~~~~~~~~~~~~~~~~~~ll~~~LR~~PD~I 239 (332)
T PRK13900 160 KKNIIISGGTSTGKTTFTNAALREIPAIERLITVEDAREIVLSNHPNRVHLLASKGGQGRAKVTTQDLIEACLRLRPDRI 239 (332)
T ss_pred CCcEEEECCCCCCHHHHHHHHHhhCCCCCeEEEecCCCccccccCCCEEEEEecCCCCCcCcCcHHHHHHHHhccCCCeE
Confidence 357999999999999999999988742 33332 1112210 00 11122345677788889999999
Q ss_pred Eeccchh
Q 001707 829 FVDEVDS 835 (1023)
Q Consensus 829 fIDEID~ 835 (1023)
++.|+-.
T Consensus 240 ivGEiR~ 246 (332)
T PRK13900 240 IVGELRG 246 (332)
T ss_pred EEEecCC
Confidence 9999953
No 449
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.88 E-value=0.2 Score=55.99 Aligned_cols=37 Identities=30% Similarity=0.402 Sum_probs=28.8
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecc
Q 001707 763 RPCKGILLFGPPGTGKTLLAKALATEA---GANFISITGS 799 (1023)
Q Consensus 763 ~p~~gVLL~GPPGTGKT~LArAIA~el---g~~fi~vs~s 799 (1023)
.+++-++|.||+|+|||+++..+|..+ |..+.-+++.
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D 109 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGD 109 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 345678889999999999999998876 5566556554
No 450
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=95.88 E-value=0.0069 Score=64.42 Aligned_cols=29 Identities=45% Similarity=0.752 Sum_probs=26.3
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001707 768 ILLFGPPGTGKTLLAKALATEAGANFISI 796 (1023)
Q Consensus 768 VLL~GPPGTGKT~LArAIA~elg~~fi~v 796 (1023)
|+|.||||+|||++|+.||..+|++.+.+
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is~ 30 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHIST 30 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeeeh
Confidence 89999999999999999999998877653
No 451
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=95.87 E-value=0.066 Score=56.00 Aligned_cols=20 Identities=20% Similarity=0.459 Sum_probs=18.6
Q ss_pred EEEEcCCCChHHHHHHHHHH
Q 001707 768 ILLFGPPGTGKTLLAKALAT 787 (1023)
Q Consensus 768 VLL~GPPGTGKT~LArAIA~ 787 (1023)
++|+||.|+|||++.+.++.
T Consensus 2 ~~ltG~N~~GKst~l~~i~~ 21 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVGL 21 (185)
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 78999999999999999983
No 452
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=95.85 E-value=0.12 Score=59.16 Aligned_cols=35 Identities=17% Similarity=0.319 Sum_probs=31.8
Q ss_pred CCceeeccCCChhHHHHHHHHHHHhhcCCcEEEeecC
Q 001707 221 SGRILLRSVPGTELYRERLIRALARELQVPLLVLDSS 257 (1023)
Q Consensus 221 ~~~iLL~~~~gsE~y~e~L~kAlA~~~~a~ll~~ds~ 257 (1023)
++.|||.|||| ..+.+||++||+.++.+++.+.-+
T Consensus 64 ~~~ilL~G~pG--tGKTtla~~lA~~l~~~~~rV~~~ 98 (327)
T TIGR01650 64 DRRVMVQGYHG--TGKSTHIEQIAARLNWPCVRVNLD 98 (327)
T ss_pred CCcEEEEeCCC--ChHHHHHHHHHHHHCCCeEEEEec
Confidence 46799999999 999999999999999999887764
No 453
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=95.85 E-value=0.026 Score=59.79 Aligned_cols=51 Identities=18% Similarity=0.188 Sum_probs=35.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccchhhhh---hHHHHHHHHHHH
Q 001707 767 GILLFGPPGTGKTLLAKALATEAGANFISITGSTLTSKWFG---DAEKLTKALFSF 819 (1023)
Q Consensus 767 gVLL~GPPGTGKT~LArAIA~elg~~fi~vs~seL~s~~~g---e~e~~I~~lF~~ 819 (1023)
-|.|+|++|+|||++++.++..+|++++. +..+...... ..-..+...|..
T Consensus 3 ~i~itG~~gsGKst~~~~l~~~~g~~~i~--~D~~~~~~~~~~~~~~~~l~~~fg~ 56 (195)
T PRK14730 3 RIGLTGGIASGKSTVGNYLAQQKGIPILD--ADIYAREALAPGSPILKAILQRYGN 56 (195)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCCeEee--CcHHHHHHHhcCchHHHHHHHHhCH
Confidence 48899999999999999999988988874 4444333222 223455555654
No 454
>PF13479 AAA_24: AAA domain
Probab=95.84 E-value=0.035 Score=59.45 Aligned_cols=21 Identities=57% Similarity=0.977 Sum_probs=18.9
Q ss_pred CceEEEEcCCCChHHHHHHHH
Q 001707 765 CKGILLFGPPGTGKTLLAKAL 785 (1023)
Q Consensus 765 ~~gVLL~GPPGTGKT~LArAI 785 (1023)
+..++|||+||+|||++|..+
T Consensus 3 ~~~~lIyG~~G~GKTt~a~~~ 23 (213)
T PF13479_consen 3 PIKILIYGPPGSGKTTLAASL 23 (213)
T ss_pred ceEEEEECCCCCCHHHHHHhC
Confidence 357999999999999999888
No 455
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=95.84 E-value=0.048 Score=68.62 Aligned_cols=77 Identities=22% Similarity=0.213 Sum_probs=50.4
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHH---hCCcEEEEeccccch-h---------------hhhhHHHHHHHHHHHHhh
Q 001707 762 LRPCKGILLFGPPGTGKTLLAKALATE---AGANFISITGSTLTS-K---------------WFGDAEKLTKALFSFASK 822 (1023)
Q Consensus 762 i~p~~gVLL~GPPGTGKT~LArAIA~e---lg~~fi~vs~seL~s-~---------------~~ge~e~~I~~lF~~A~k 822 (1023)
+.+...++|+||||||||+|+..++.. .|-.++.++..+-.. . .....+..+..+-...+.
T Consensus 57 ip~GsiteI~G~~GsGKTtLal~~~~~a~~~G~~v~yId~E~t~~~~~A~~lGvDl~~llv~~~~~~E~~l~~i~~lv~~ 136 (790)
T PRK09519 57 LPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTGEQALEIADMLIRS 136 (790)
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchhHHHHHHcCCChhHeEEecCCCHHHHHHHHHHHhhc
Confidence 556677899999999999999776543 366677766544221 0 011223333333333455
Q ss_pred cCCeEEEeccchhhhh
Q 001707 823 LAPVIIFVDEVDSLLG 838 (1023)
Q Consensus 823 ~~PsIIfIDEID~L~~ 838 (1023)
..+.+|+||-|..+..
T Consensus 137 ~~~~LVVIDSI~aL~~ 152 (790)
T PRK09519 137 GALDIVVIDSVAALVP 152 (790)
T ss_pred CCCeEEEEcchhhhcc
Confidence 6799999999999885
No 456
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=95.83 E-value=0.54 Score=55.51 Aligned_cols=107 Identities=15% Similarity=0.086 Sum_probs=57.1
Q ss_pred CcHHHHhhcCCceeecCCCHHHHHHHHHHHHhccccC-------------C-----ccCHHHHHHHcc--CCcHHHHHHH
Q 001707 883 LDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLE-------------S-----GFQFNELANATE--GYSGSDLKNL 942 (1023)
Q Consensus 883 Ld~aLlrRFd~~I~V~lPd~eeR~~ILk~~L~~~~l~-------------~-----dvdl~~LA~~Te--GySgaDL~~L 942 (1023)
|..++-.+--+.|.+.-.+.+.-..++...+....-. . ..+..++-...+ |-=-.||..+
T Consensus 199 LskaLPn~vf~tI~L~Das~~~Ak~yV~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~l 278 (431)
T PF10443_consen 199 LSKALPNRVFKTISLSDASPESAKQYVLSQLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFL 278 (431)
T ss_pred HHHhCCCCceeEEeecCCCHHHHHHHHHHHhcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHH
Confidence 6666666544778888888777777777777543100 0 123334433332 2233677777
Q ss_pred HHHH-----HHHHHHHHHHHHHHHHHhhCC--CCCCCCcCCCCHHHHHHHHHhh
Q 001707 943 CIAA-----AYRPVQELLEEERKLFIQRGK--NDAAPVLRPLKLEDFIQSKAKV 989 (1023)
Q Consensus 943 ~~~A-----a~~Airr~l~~e~~~~~~~~~--~~~~~~~r~Lt~eDF~~Al~kv 989 (1023)
+++. ...|+.++++........... ........+.+.+.+-.-++.+
T Consensus 279 vrRiksGe~p~~Av~~iI~qsa~eI~k~fl~~~~~~~~~~~Wt~~QaW~LIk~L 332 (431)
T PF10443_consen 279 VRRIKSGESPEEAVEEIISQSASEIRKMFLLDDSDDAKSLKWTREQAWYLIKLL 332 (431)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCCcccCCCCCHHHHHHHHHHh
Confidence 6552 234555544432221111111 1223445788888887777766
No 457
>PRK00279 adk adenylate kinase; Reviewed
Probab=95.82 E-value=0.0084 Score=64.01 Aligned_cols=30 Identities=43% Similarity=0.702 Sum_probs=26.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001707 767 GILLFGPPGTGKTLLAKALATEAGANFISI 796 (1023)
Q Consensus 767 gVLL~GPPGTGKT~LArAIA~elg~~fi~v 796 (1023)
.|+++||||+|||++|+.||..++++.+.+
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~~~~is~ 31 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYGIPHIST 31 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEEC
Confidence 489999999999999999999999776653
No 458
>PRK04040 adenylate kinase; Provisional
Probab=95.79 E-value=0.0096 Score=62.78 Aligned_cols=31 Identities=23% Similarity=0.385 Sum_probs=26.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh--CCcEEE
Q 001707 765 CKGILLFGPPGTGKTLLAKALATEA--GANFIS 795 (1023)
Q Consensus 765 ~~gVLL~GPPGTGKT~LArAIA~el--g~~fi~ 795 (1023)
+..|+|+|+||+|||++++.++..+ ++.++.
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~~ 34 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLKEDYKIVN 34 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhccCCeEEe
Confidence 3568999999999999999999999 666643
No 459
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=95.79 E-value=0.077 Score=56.12 Aligned_cols=23 Identities=22% Similarity=0.392 Sum_probs=20.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHH
Q 001707 765 CKGILLFGPPGTGKTLLAKALAT 787 (1023)
Q Consensus 765 ~~gVLL~GPPGTGKT~LArAIA~ 787 (1023)
...++|.||.|+|||++.+.|+.
T Consensus 29 ~~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 29 GRLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred CeEEEEECCCCCccHHHHHHHHH
Confidence 35699999999999999999993
No 460
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.77 E-value=0.057 Score=57.86 Aligned_cols=23 Identities=57% Similarity=0.787 Sum_probs=21.6
Q ss_pred EEEEcCCCChHHHHHHHHHHHhC
Q 001707 768 ILLFGPPGTGKTLLAKALATEAG 790 (1023)
Q Consensus 768 VLL~GPPGTGKT~LArAIA~elg 790 (1023)
|+|.|+||+|||++|+.+|+++.
T Consensus 4 iIlTGyPgsGKTtfakeLak~L~ 26 (261)
T COG4088 4 IILTGYPGSGKTTFAKELAKELR 26 (261)
T ss_pred EEEecCCCCCchHHHHHHHHHHH
Confidence 89999999999999999999983
No 461
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=95.75 E-value=0.025 Score=61.74 Aligned_cols=34 Identities=32% Similarity=0.556 Sum_probs=28.3
Q ss_pred EEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccc
Q 001707 768 ILLFGPPGTGKTLLAKALATEA---GANFISITGSTL 801 (1023)
Q Consensus 768 VLL~GPPGTGKT~LArAIA~el---g~~fi~vs~seL 801 (1023)
|+|.|+||+|||++|++++..+ +.+++.++...+
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~l 38 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLI 38 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHH
Confidence 7899999999999999999987 566777765444
No 462
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=95.73 E-value=0.056 Score=61.58 Aligned_cols=81 Identities=23% Similarity=0.267 Sum_probs=49.2
Q ss_pred cCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---------CCcEEEEeccccch-h-------hhh-------------
Q 001707 758 RGNLLRPCKGILLFGPPGTGKTLLAKALATEA---------GANFISITGSTLTS-K-------WFG------------- 807 (1023)
Q Consensus 758 ~~gli~p~~gVLL~GPPGTGKT~LArAIA~el---------g~~fi~vs~seL~s-~-------~~g------------- 807 (1023)
.+| +.+..-++|+||||+|||.|+..+|-.. +..+++++...-+. . ..+
T Consensus 90 gGG-i~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~~a~~~g~d~~~~l~~i~~~ 168 (313)
T TIGR02238 90 GGG-IESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRAIAERFGVDPDAVLDNILYA 168 (313)
T ss_pred CCC-CcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHHHHHHcCCChHHhcCcEEEe
Confidence 345 4566678899999999999998887432 34667777554110 0 000
Q ss_pred ---hHH---HHHHHHHHHHhhcCCeEEEeccchhhhhc
Q 001707 808 ---DAE---KLTKALFSFASKLAPVIIFVDEVDSLLGA 839 (1023)
Q Consensus 808 ---e~e---~~I~~lF~~A~k~~PsIIfIDEID~L~~~ 839 (1023)
..+ ..+..+-.......+.+|+||-|-.++..
T Consensus 169 ~~~~~e~~~~~l~~l~~~i~~~~~~LvVIDSisal~r~ 206 (313)
T TIGR02238 169 RAYTSEHQMELLDYLAAKFSEEPFRLLIVDSIMALFRV 206 (313)
T ss_pred cCCCHHHHHHHHHHHHHHhhccCCCEEEEEcchHhhhh
Confidence 111 12222222233457889999999988653
No 463
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=95.73 E-value=0.17 Score=54.88 Aligned_cols=21 Identities=43% Similarity=0.506 Sum_probs=19.1
Q ss_pred EEEEcCCCChHHHHHHHHHHH
Q 001707 768 ILLFGPPGTGKTLLAKALATE 788 (1023)
Q Consensus 768 VLL~GPPGTGKT~LArAIA~e 788 (1023)
-+|.||||+|||+|+..+|..
T Consensus 4 ~ll~g~~G~GKS~lal~la~~ 24 (239)
T cd01125 4 SALVAPGGTGKSSLLLVLALA 24 (239)
T ss_pred eEEEcCCCCCHHHHHHHHHHH
Confidence 589999999999999999864
No 464
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.72 E-value=0.0081 Score=57.39 Aligned_cols=22 Identities=50% Similarity=0.670 Sum_probs=20.9
Q ss_pred EEEEcCCCChHHHHHHHHHHHh
Q 001707 768 ILLFGPPGTGKTLLAKALATEA 789 (1023)
Q Consensus 768 VLL~GPPGTGKT~LArAIA~el 789 (1023)
|+|.|+||+|||++|+.|+.++
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999987
No 465
>PRK14527 adenylate kinase; Provisional
Probab=95.72 E-value=0.0089 Score=62.57 Aligned_cols=31 Identities=42% Similarity=0.672 Sum_probs=27.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 001707 765 CKGILLFGPPGTGKTLLAKALATEAGANFIS 795 (1023)
Q Consensus 765 ~~gVLL~GPPGTGKT~LArAIA~elg~~fi~ 795 (1023)
+.-|+++||||+|||++|+.+|...++..+.
T Consensus 6 ~~~i~i~G~pGsGKsT~a~~La~~~~~~~is 36 (191)
T PRK14527 6 NKVVIFLGPPGAGKGTQAERLAQELGLKKLS 36 (191)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCCCCC
Confidence 4569999999999999999999999876554
No 466
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=95.70 E-value=0.069 Score=61.61 Aligned_cols=80 Identities=24% Similarity=0.235 Sum_probs=48.5
Q ss_pred CCCCCCCceEEEEcCCCChHHHHHHHHHHHh---------CCcEEEEeccccch-h-------hhh--------------
Q 001707 759 GNLLRPCKGILLFGPPGTGKTLLAKALATEA---------GANFISITGSTLTS-K-------WFG-------------- 807 (1023)
Q Consensus 759 ~gli~p~~gVLL~GPPGTGKT~LArAIA~el---------g~~fi~vs~seL~s-~-------~~g-------------- 807 (1023)
+| +....-..|+||||||||.|+..+|-.. +..+++++...-+. . .++
T Consensus 121 GG-i~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~ia~~~g~d~~~~l~~I~~~~ 199 (344)
T PLN03187 121 GG-IETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVPIAERFGMDADAVLDNIIYAR 199 (344)
T ss_pred CC-CCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHHHHHHcCCChhhhcCeEEEec
Confidence 45 4555667899999999999999887433 24667776643100 0 000
Q ss_pred --hHH---HHHHHHHHHHhhcCCeEEEeccchhhhhc
Q 001707 808 --DAE---KLTKALFSFASKLAPVIIFVDEVDSLLGA 839 (1023)
Q Consensus 808 --e~e---~~I~~lF~~A~k~~PsIIfIDEID~L~~~ 839 (1023)
..+ ..+..+-......++.+|+||-|-.++..
T Consensus 200 ~~~~e~~~~~l~~l~~~i~~~~~~LvVIDSital~r~ 236 (344)
T PLN03187 200 AYTYEHQYNLLLGLAAKMAEEPFRLLIVDSVIALFRV 236 (344)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHhhhc
Confidence 111 12222222333456899999999988654
No 467
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=95.68 E-value=0.018 Score=60.13 Aligned_cols=70 Identities=34% Similarity=0.451 Sum_probs=44.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhC--CcEEEEecc-ccch---hh----------hhhHHHHHHHHHHHHhhcCCeEE
Q 001707 765 CKGILLFGPPGTGKTLLAKALATEAG--ANFISITGS-TLTS---KW----------FGDAEKLTKALFSFASKLAPVII 828 (1023)
Q Consensus 765 ~~gVLL~GPPGTGKT~LArAIA~elg--~~fi~vs~s-eL~s---~~----------~ge~e~~I~~lF~~A~k~~PsII 828 (1023)
...++|.||+|+|||+++++++.... ...+.+... ++.. .+ .+........++..+.+..|.+|
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lR~~pd~i 104 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADLLRSALRMRPDRI 104 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHHHHHHhccCCCEE
Confidence 35799999999999999999998763 122222111 1100 00 01112345566667778889999
Q ss_pred Eeccch
Q 001707 829 FVDEVD 834 (1023)
Q Consensus 829 fIDEID 834 (1023)
++.|+-
T Consensus 105 ~igEir 110 (186)
T cd01130 105 IVGEVR 110 (186)
T ss_pred EEEccC
Confidence 999994
No 468
>PRK06696 uridine kinase; Validated
Probab=95.67 E-value=0.023 Score=61.14 Aligned_cols=38 Identities=26% Similarity=0.287 Sum_probs=32.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccc
Q 001707 765 CKGILLFGPPGTGKTLLAKALATEA---GANFISITGSTLT 802 (1023)
Q Consensus 765 ~~gVLL~GPPGTGKT~LArAIA~el---g~~fi~vs~seL~ 802 (1023)
+.-|.|.|++|+|||+||+.|+..+ |.+++.+++.++.
T Consensus 22 ~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~ 62 (223)
T PRK06696 22 PLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFH 62 (223)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecccccc
Confidence 4568899999999999999999998 6778777766554
No 469
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=95.65 E-value=0.031 Score=65.44 Aligned_cols=27 Identities=30% Similarity=0.455 Sum_probs=23.7
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhC
Q 001707 764 PCKGILLFGPPGTGKTLLAKALATEAG 790 (1023)
Q Consensus 764 p~~gVLL~GPPGTGKT~LArAIA~elg 790 (1023)
+...++|.||||+|||+|++.|++...
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I~ 193 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQAIT 193 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHhhc
Confidence 445699999999999999999999863
No 470
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=95.63 E-value=0.028 Score=70.68 Aligned_cols=101 Identities=20% Similarity=0.304 Sum_probs=58.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh---C--CcEEEEecccc----chhhhhhHHHHHHHHHHHHh----------hcCCeE
Q 001707 767 GILLFGPPGTGKTLLAKALATEA---G--ANFISITGSTL----TSKWFGDAEKLTKALFSFAS----------KLAPVI 827 (1023)
Q Consensus 767 gVLL~GPPGTGKT~LArAIA~el---g--~~fi~vs~seL----~s~~~ge~e~~I~~lF~~A~----------k~~PsI 827 (1023)
-++|.|+||||||++++++...+ + .+++.+.+..- +....|.....++.++.... .....+
T Consensus 340 ~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApTg~AA~~L~e~~g~~a~Tih~lL~~~~~~~~~~~~~~~~~~~l 419 (720)
T TIGR01448 340 VVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPTGRAAKRLGEVTGLTASTIHRLLGYGPDTFRHNHLEDPIDCDL 419 (720)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCchHHHHHHHHhcCCccccHHHHhhccCCccchhhhhccccCCE
Confidence 58999999999999999997655 4 34443332211 11122222344555553211 134579
Q ss_pred EEeccchhhhhccCCCchhHHHHHHHHHHHhhhcCccCCCCceEEEEEecCCCCCCc
Q 001707 828 IFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPFDLD 884 (1023)
Q Consensus 828 IfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~~~~~VlVIaTTN~p~~Ld 884 (1023)
|+|||+-.+. ..++..|+..+ ..+.+++++|-.+....+.
T Consensus 420 lIvDEaSMvd------------~~~~~~Ll~~~-----~~~~rlilvGD~~QLpsV~ 459 (720)
T TIGR01448 420 LIVDESSMMD------------TWLALSLLAAL-----PDHARLLLVGDTDQLPSVG 459 (720)
T ss_pred EEEeccccCC------------HHHHHHHHHhC-----CCCCEEEEECccccccCCC
Confidence 9999997762 12233444332 2356788888776544443
No 471
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=95.62 E-value=0.02 Score=65.39 Aligned_cols=70 Identities=26% Similarity=0.397 Sum_probs=45.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEe-ccccch---h---hhhhHHHHHHHHHHHHhhcCCeEEEecc
Q 001707 765 CKGILLFGPPGTGKTLLAKALATEA-----GANFISIT-GSTLTS---K---WFGDAEKLTKALFSFASKLAPVIIFVDE 832 (1023)
Q Consensus 765 ~~gVLL~GPPGTGKT~LArAIA~el-----g~~fi~vs-~seL~s---~---~~ge~e~~I~~lF~~A~k~~PsIIfIDE 832 (1023)
..++++.|++|+|||+++++++.+. ...++.+. ..++.- . +....+.....++..+-+..|..|++.|
T Consensus 148 ~~~ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtIEd~~El~~~~~~~v~~~~~~~~~~~~ll~~aLR~~PD~IivGE 227 (319)
T PRK13894 148 HRNILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIEDTGEIQCAAENYVQYHTSIDVNMTALLKTTLRMRPDRILVGE 227 (319)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEEcCCCccccCCCCEEEEecCCCCCHHHHHHHHhcCCCCEEEEec
Confidence 3579999999999999999999874 12233221 112210 0 1111122356777788889999999999
Q ss_pred ch
Q 001707 833 VD 834 (1023)
Q Consensus 833 ID 834 (1023)
+-
T Consensus 228 iR 229 (319)
T PRK13894 228 VR 229 (319)
T ss_pred cC
Confidence 95
No 472
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=95.62 E-value=0.081 Score=63.94 Aligned_cols=77 Identities=22% Similarity=0.247 Sum_probs=50.1
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEeccccchh--------------hh-----------------
Q 001707 762 LRPCKGILLFGPPGTGKTLLAKALATEA----GANFISITGSTLTSK--------------WF----------------- 806 (1023)
Q Consensus 762 i~p~~gVLL~GPPGTGKT~LArAIA~el----g~~fi~vs~seL~s~--------------~~----------------- 806 (1023)
+.+..-+||+|+||+|||+|+..++.+. |-+++.++..+-... +.
T Consensus 28 ~p~Gs~~li~G~pGsGKT~l~~qf~~~~~~~~ge~~lyis~ee~~~~i~~~~~~~g~d~~~~~~~g~l~~~~~~~~~~~~ 107 (509)
T PRK09302 28 LPKGRPTLVSGTAGTGKTLFALQFLVNGIKRFDEPGVFVTFEESPEDIIRNVASFGWDLQKLIDEGKLFILDASPDPSEQ 107 (509)
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCEEEEEccCCHHHHHHHHHHcCCCHHHHhhCCeEEEEecCcccccc
Confidence 4566789999999999999999876543 556666554322110 00
Q ss_pred -----hhHHHHHHHHHHHHhhcCCeEEEeccchhhhh
Q 001707 807 -----GDAEKLTKALFSFASKLAPVIIFVDEVDSLLG 838 (1023)
Q Consensus 807 -----ge~e~~I~~lF~~A~k~~PsIIfIDEID~L~~ 838 (1023)
.+.+..+..+-..+....+.+|+||-+..+..
T Consensus 108 ~~~~~~~~~~l~~~l~~~i~~~~~~~vVIDSls~l~~ 144 (509)
T PRK09302 108 EEAGEYDLEALFIRIEYAIDKIGAKRVVLDSIEALFS 144 (509)
T ss_pred cccccccHHHHHHHHHHHHHhhCCCEEEECCHHHHHh
Confidence 01123344455556677889999999988753
No 473
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=95.60 E-value=0.18 Score=52.11 Aligned_cols=113 Identities=18% Similarity=0.140 Sum_probs=61.7
Q ss_pred EEEEcCCCChHHHHHHHHHHHh---CCcEEE---Eeccc----c--c-----------h-------hhhhhHHHHHHHHH
Q 001707 768 ILLFGPPGTGKTLLAKALATEA---GANFIS---ITGST----L--T-----------S-------KWFGDAEKLTKALF 817 (1023)
Q Consensus 768 VLL~GPPGTGKT~LArAIA~el---g~~fi~---vs~se----L--~-----------s-------~~~ge~e~~I~~lF 817 (1023)
|.+|+++|.|||++|-++|..+ |..+.. +.... . + + ....+.....+..+
T Consensus 5 i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~~~~gE~~~l~~l~~v~~~~~g~~~~~~~~~~~~~~~~a~~~~ 84 (159)
T cd00561 5 IQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKGGWKYGELKALERLPNIEIHRMGRGFFWTTENDEEDIAAAAEGW 84 (159)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCCCCccCHHHHHHhCCCcEEEECCCCCccCCCChHHHHHHHHHHH
Confidence 7889999999999999998776 444333 33310 0 0 0 00011122334455
Q ss_pred HHHh----hcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhcCccCCCCceEEEEEecCCCCCCcHHHHhhcCC
Q 001707 818 SFAS----KLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPFDLDDAVIRRLPR 893 (1023)
Q Consensus 818 ~~A~----k~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~ 893 (1023)
..|+ .....+|+||||-......--. ...++..++.. +..+=||.|... .++.++.+.|.
T Consensus 85 ~~a~~~~~~~~~dLlVLDEi~~a~~~gli~---------~~~v~~ll~~r----p~~~evIlTGr~---~p~~l~e~AD~ 148 (159)
T cd00561 85 AFAKEAIASGEYDLVILDEINYALGYGLLD---------VEEVVDLLKAK----PEDLELVLTGRN---APKELIEAADL 148 (159)
T ss_pred HHHHHHHhcCCCCEEEEechHhHhhCCCCC---------HHHHHHHHHcC----CCCCEEEEECCC---CCHHHHHhCce
Confidence 5443 2356899999998765332111 12344444432 234556667754 45566665554
Q ss_pred cee
Q 001707 894 RIY 896 (1023)
Q Consensus 894 ~I~ 896 (1023)
+-+
T Consensus 149 VTE 151 (159)
T cd00561 149 VTE 151 (159)
T ss_pred eee
Confidence 433
No 474
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=95.58 E-value=0.036 Score=58.50 Aligned_cols=67 Identities=28% Similarity=0.424 Sum_probs=43.0
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh-CCcEEEEeccccchhhh---h---------------hHHHHHHHHHHHHhhc
Q 001707 763 RPCKGILLFGPPGTGKTLLAKALATEA-GANFISITGSTLTSKWF---G---------------DAEKLTKALFSFASKL 823 (1023)
Q Consensus 763 ~p~~gVLL~GPPGTGKT~LArAIA~el-g~~fi~vs~seL~s~~~---g---------------e~e~~I~~lF~~A~k~ 823 (1023)
..|.-++|.|+||+|||+++..+...+ +-.++.++..++..... + ........+...+...
T Consensus 13 ~~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~~~p~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~a~~~ 92 (199)
T PF06414_consen 13 EKPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFRQFHPDYDELLKADPDEASELTQKEASRLAEKLIEYAIEN 92 (199)
T ss_dssp SS-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGGGSTTHHHHHHHHCCCTHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cCCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHHHhccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHc
Confidence 455778999999999999999999988 78888888877643321 1 1223445556666666
Q ss_pred CCeEEE
Q 001707 824 APVIIF 829 (1023)
Q Consensus 824 ~PsIIf 829 (1023)
...|||
T Consensus 93 ~~nii~ 98 (199)
T PF06414_consen 93 RYNIIF 98 (199)
T ss_dssp T--EEE
T ss_pred CCCEEE
Confidence 666764
No 475
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=95.55 E-value=0.041 Score=64.41 Aligned_cols=98 Identities=17% Similarity=0.304 Sum_probs=64.7
Q ss_pred CCeEEEEcCchhhhhhccCCccHHHHHHHHHHHHhcCCCCEEEEecccCCCCCccccccccccccccccccCCCCcchhh
Q 001707 485 QPLIVYFPDSSLWLSRAVPRCNRKEFVRKVEEMFDQLSGPVVLICGQNKNETGPKEKEKFTMILPNFGRLAKLPLPLQRL 564 (1023)
Q Consensus 485 ~p~Iiff~di~~~~~~s~~~~~~~~~~s~l~~~~~~~~g~v~vI~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 564 (1023)
++-+|+|||++.+... +..++.++.+|..+.+. |..+||+++..+. +
T Consensus 199 ~~dlLiiDDi~~l~~~---~~~~~~l~~~~n~~~~~--~~~iiits~~~p~----~------------------------ 245 (405)
T TIGR00362 199 SVDLLLIDDIQFLAGK---ERTQEEFFHTFNALHEN--GKQIVLTSDRPPK----E------------------------ 245 (405)
T ss_pred hCCEEEEehhhhhcCC---HHHHHHHHHHHHHHHHC--CCCEEEecCCCHH----H------------------------
Confidence 3679999999976432 12345677777766553 4556665544332 0
Q ss_pred hcccccCCCcchHHHHhccc--cEEEEcCCChHHHHHHHHHHHHHHhhhhhhhhhHHHHHH
Q 001707 565 TEGLKATKRSDDNEIYNLFT--NVLSIHPPKEEDLLRTFNKQVEEDRRIVIYRSNLNELHK 623 (1023)
Q Consensus 565 vIGmTNR~d~iDeaL~rrFe--~~ieI~LPdee~Rl~Il~Iht~~~~~~~~~~~~v~~l~~ 623 (1023)
.+.+++.|..||. ..++|++||.+.|.+|++..... ......++-++.|+.
T Consensus 246 -------l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~~~~-~~~~l~~e~l~~ia~ 298 (405)
T TIGR00362 246 -------LPGLEERLRSRFEWGLVVDIEPPDLETRLAILQKKAEE-EGLELPDEVLEFIAK 298 (405)
T ss_pred -------HhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHHHHH-cCCCCCHHHHHHHHH
Confidence 1236788888997 48999999999999999987544 334445555666655
No 476
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=95.54 E-value=0.031 Score=63.87 Aligned_cols=69 Identities=25% Similarity=0.313 Sum_probs=45.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC-----CcEEEEe-ccccchh------hhhhHHHHHHHHHHHHhhcCCeEEEeccc
Q 001707 766 KGILLFGPPGTGKTLLAKALATEAG-----ANFISIT-GSTLTSK------WFGDAEKLTKALFSFASKLAPVIIFVDEV 833 (1023)
Q Consensus 766 ~gVLL~GPPGTGKT~LArAIA~elg-----~~fi~vs-~seL~s~------~~ge~e~~I~~lF~~A~k~~PsIIfIDEI 833 (1023)
.++|+.|++|+|||+++++++.... ..++.+. ..++.-. +.....-....+...+-+..|..|++.|+
T Consensus 145 ~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~~El~~~~~n~v~l~~~~~~~~~~lv~~aLR~~PD~IivGEi 224 (323)
T PRK13833 145 LNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAEIQCAAENAVALHTSDTVDMARLLKSTMRLRPDRIIVGEV 224 (323)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecCCcccccCCCCEEEeccCCCcCHHHHHHHHhCCCCCEEEEeec
Confidence 5799999999999999999998762 2333332 2222110 00111223556677788899999999998
Q ss_pred h
Q 001707 834 D 834 (1023)
Q Consensus 834 D 834 (1023)
-
T Consensus 225 R 225 (323)
T PRK13833 225 R 225 (323)
T ss_pred C
Confidence 4
No 477
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.54 E-value=0.049 Score=55.84 Aligned_cols=33 Identities=39% Similarity=0.509 Sum_probs=27.2
Q ss_pred EEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccc
Q 001707 768 ILLFGPPGTGKTLLAKALATEA---GANFISITGST 800 (1023)
Q Consensus 768 VLL~GPPGTGKT~LArAIA~el---g~~fi~vs~se 800 (1023)
+++.||||+|||+++..+|..+ +..+..+++..
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~ 38 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADT 38 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCC
Confidence 7899999999999999998876 66676666553
No 478
>PRK04182 cytidylate kinase; Provisional
Probab=95.52 E-value=0.012 Score=59.88 Aligned_cols=29 Identities=45% Similarity=0.718 Sum_probs=26.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 001707 767 GILLFGPPGTGKTLLAKALATEAGANFIS 795 (1023)
Q Consensus 767 gVLL~GPPGTGKT~LArAIA~elg~~fi~ 795 (1023)
.|+|.|++|+|||++|+.+|..+|++++.
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg~~~id 30 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLGLKHVS 30 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEec
Confidence 48899999999999999999999998875
No 479
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=95.51 E-value=0.028 Score=62.72 Aligned_cols=69 Identities=26% Similarity=0.369 Sum_probs=37.0
Q ss_pred EEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccc---hhhh-hhHHHHHHHHH----HHHhhcCCeEEEeccchhh
Q 001707 768 ILLFGPPGTGKTLLAKALATEA---GANFISITGSTLT---SKWF-GDAEKLTKALF----SFASKLAPVIIFVDEVDSL 836 (1023)
Q Consensus 768 VLL~GPPGTGKT~LArAIA~el---g~~fi~vs~seL~---s~~~-ge~e~~I~~lF----~~A~k~~PsIIfIDEID~L 836 (1023)
|+|+|.||+|||++|+.|+..+ +..++.++-..+. ..|. ...++.++..+ ..+- ....||++|+...+
T Consensus 4 iil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~~~~~~y~~~~~Ek~~R~~l~s~v~r~l-s~~~iVI~Dd~nYi 82 (270)
T PF08433_consen 4 IILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLGIDRNDYADSKKEKEARGSLKSAVERAL-SKDTIVILDDNNYI 82 (270)
T ss_dssp EEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH-TTSSS--GGGHHHHHHHHHHHHHHHH-TT-SEEEE-S---S
T ss_pred EEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccccchhhhhchhhhHHHHHHHHHHHHHhh-ccCeEEEEeCCchH
Confidence 8999999999999999999876 5677776644432 1121 12344444333 3322 23479999998876
Q ss_pred h
Q 001707 837 L 837 (1023)
Q Consensus 837 ~ 837 (1023)
-
T Consensus 83 K 83 (270)
T PF08433_consen 83 K 83 (270)
T ss_dssp H
T ss_pred H
Confidence 4
No 480
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=95.50 E-value=0.012 Score=59.11 Aligned_cols=33 Identities=39% Similarity=0.603 Sum_probs=26.2
Q ss_pred EEcCCCChHHHHHHHHHHHhCCcEEEEeccccchh
Q 001707 770 LFGPPGTGKTLLAKALATEAGANFISITGSTLTSK 804 (1023)
Q Consensus 770 L~GPPGTGKT~LArAIA~elg~~fi~vs~seL~s~ 804 (1023)
|.||||+|||++|+.||.+.|+.. ++..+++..
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~~~--is~~~llr~ 33 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGLVH--ISVGDLLRE 33 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTSEE--EEHHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhcCcce--echHHHHHH
Confidence 689999999999999999997654 455555443
No 481
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=95.49 E-value=0.035 Score=59.59 Aligned_cols=23 Identities=52% Similarity=0.683 Sum_probs=19.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh
Q 001707 767 GILLFGPPGTGKTLLAKALATEA 789 (1023)
Q Consensus 767 gVLL~GPPGTGKT~LArAIA~el 789 (1023)
-+.+.||+|||||+||-+.|.+.
T Consensus 21 ~v~~~G~AGTGKT~LA~a~Al~~ 43 (205)
T PF02562_consen 21 LVIVNGPAGTGKTFLALAAALEL 43 (205)
T ss_dssp EEEEE--TTSSTTHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHH
Confidence 48999999999999999999766
No 482
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=95.49 E-value=0.12 Score=64.77 Aligned_cols=154 Identities=21% Similarity=0.216 Sum_probs=86.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh--CCcEEEEec--cccc------------hhhh---h-------------hHHH
Q 001707 764 PCKGILLFGPPGTGKTLLAKALATEA--GANFISITG--STLT------------SKWF---G-------------DAEK 811 (1023)
Q Consensus 764 p~~gVLL~GPPGTGKT~LArAIA~el--g~~fi~vs~--seL~------------s~~~---g-------------e~e~ 811 (1023)
..+-+||.-|.|.|||+|+...+..+ +.++.-+++ ++.- +.+. + ..+.
T Consensus 36 ~~RL~li~APAGfGKttl~aq~~~~~~~~~~v~Wlslde~dndp~rF~~yLi~al~~~~p~~~~~a~~l~q~~~~~~l~~ 115 (894)
T COG2909 36 DYRLILISAPAGFGKTTLLAQWRELAADGAAVAWLSLDESDNDPARFLSYLIAALQQATPTLGDEAQTLLQKHQYVSLES 115 (894)
T ss_pred CceEEEEeCCCCCcHHHHHHHHHHhcCcccceeEeecCCccCCHHHHHHHHHHHHHHhCccccHHHHHHHHhcccccHHH
Confidence 34569999999999999999998633 444433333 2210 0000 0 1223
Q ss_pred HHHHHHHH-HhhcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhcCccCCCCceEEEEEec-CCCCC-CcHHHH
Q 001707 812 LTKALFSF-ASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGAT-NRPFD-LDDAVI 888 (1023)
Q Consensus 812 ~I~~lF~~-A~k~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~~~~~VlVIaTT-N~p~~-Ld~aLl 888 (1023)
.+..+|.+ +....|..+||||.+.+- +.....-+..|+... +.++.+|.|| ++|.. +.. +
T Consensus 116 l~~~L~~Ela~~~~pl~LVlDDyHli~--------~~~l~~~l~fLl~~~-------P~~l~lvv~SR~rP~l~la~--l 178 (894)
T COG2909 116 LLSSLLNELASYEGPLYLVLDDYHLIS--------DPALHEALRFLLKHA-------PENLTLVVTSRSRPQLGLAR--L 178 (894)
T ss_pred HHHHHHHHHHhhcCceEEEeccccccC--------cccHHHHHHHHHHhC-------CCCeEEEEEeccCCCCcccc--e
Confidence 45566664 445579999999999873 223344444555432 3456666666 44432 222 1
Q ss_pred hhcCCceeec----CCCHHHHHHHHHHHHhccccCCccCHHHHHHHccCCcH
Q 001707 889 RRLPRRIYVD----LPDAENRMKILRIFLAHESLESGFQFNELANATEGYSG 936 (1023)
Q Consensus 889 rRFd~~I~V~----lPd~eeR~~ILk~~L~~~~l~~dvdl~~LA~~TeGySg 936 (1023)
|-=+..+++. ..+.++-.++|...... . -+..++..|-..++|+..
T Consensus 179 Rlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l-~-Ld~~~~~~L~~~teGW~~ 228 (894)
T COG2909 179 RLRDELLEIGSEELRFDTEEAAAFLNDRGSL-P-LDAADLKALYDRTEGWAA 228 (894)
T ss_pred eehhhHHhcChHhhcCChHHHHHHHHHcCCC-C-CChHHHHHHHhhcccHHH
Confidence 1111122222 14667777777655321 1 245677888888888643
No 483
>PLN02199 shikimate kinase
Probab=95.48 E-value=0.022 Score=64.17 Aligned_cols=33 Identities=27% Similarity=0.467 Sum_probs=30.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001707 765 CKGILLFGPPGTGKTLLAKALATEAGANFISIT 797 (1023)
Q Consensus 765 ~~gVLL~GPPGTGKT~LArAIA~elg~~fi~vs 797 (1023)
..+|+|.|.+|+|||++++.+|..+|++|+..+
T Consensus 102 ~~~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD 134 (303)
T PLN02199 102 GRSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCD 134 (303)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEehH
Confidence 357999999999999999999999999998754
No 484
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=95.48 E-value=0.013 Score=59.65 Aligned_cols=27 Identities=44% Similarity=0.669 Sum_probs=21.5
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 001707 768 ILLFGPPGTGKTLLAKALATEAGANFIS 795 (1023)
Q Consensus 768 VLL~GPPGTGKT~LArAIA~elg~~fi~ 795 (1023)
|.|+|+||||||+|+++|+.. |++++.
T Consensus 2 I~i~G~~stGKTTL~~~L~~~-g~~~v~ 28 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR-GYPVVP 28 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH-T-EEE-
T ss_pred EEEECCCCCCHHHHHHHHHHc-CCeEEe
Confidence 789999999999999999999 888763
No 485
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=95.48 E-value=0.12 Score=62.49 Aligned_cols=77 Identities=23% Similarity=0.242 Sum_probs=50.6
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccchhhh----------------------------hhHH
Q 001707 762 LRPCKGILLFGPPGTGKTLLAKALATEA---GANFISITGSTLTSKWF----------------------------GDAE 810 (1023)
Q Consensus 762 i~p~~gVLL~GPPGTGKT~LArAIA~el---g~~fi~vs~seL~s~~~----------------------------ge~e 810 (1023)
+.....+||+|+||+|||+|+..++.+. |-+++.++..+-..... ...+
T Consensus 270 ~~~g~~~li~G~~G~GKT~l~~~~~~~~~~~g~~~~yis~e~~~~~i~~~~~~~g~~~~~~~~~g~l~i~~~~~~~~~~~ 349 (509)
T PRK09302 270 FFRGSIILVSGATGTGKTLLASKFAEAACRRGERCLLFAFEESRAQLIRNARSWGIDLEKMEEKGLLKIICARPESYGLE 349 (509)
T ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHcCCChHHHhhcCCceeecCCcccCCHH
Confidence 4455678999999999999999988654 66776665432211100 0112
Q ss_pred HHHHHHHHHHhhcCCeEEEeccchhhhh
Q 001707 811 KLTKALFSFASKLAPVIIFVDEVDSLLG 838 (1023)
Q Consensus 811 ~~I~~lF~~A~k~~PsIIfIDEID~L~~ 838 (1023)
..+..+-.......+.+|+||-+..+..
T Consensus 350 ~~~~~i~~~i~~~~~~~vVIDslt~l~~ 377 (509)
T PRK09302 350 DHLIIIKREIEEFKPSRVAIDPLSALAR 377 (509)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCHHHHHH
Confidence 3344444455566789999999998854
No 486
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=95.46 E-value=2.9 Score=49.60 Aligned_cols=204 Identities=21% Similarity=0.277 Sum_probs=111.7
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccch---------------hhhh-----hHHHHHHHHHHH
Q 001707 763 RPCKGILLFGPPGTGKTLLAKALATEA---GANFISITGSTLTS---------------KWFG-----DAEKLTKALFSF 819 (1023)
Q Consensus 763 ~p~~gVLL~GPPGTGKT~LArAIA~el---g~~fi~vs~seL~s---------------~~~g-----e~e~~I~~lF~~ 819 (1023)
.+|.-||+.|--|+||||.|.-+|.++ +..+..+.+....- .+++ .+....+.....
T Consensus 98 ~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~~ 177 (451)
T COG0541 98 KPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALEK 177 (451)
T ss_pred CCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHHH
Confidence 567789999999999999999999988 55555555432210 1111 244566777888
Q ss_pred HhhcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhcCccCCCCceEEEEEecCCCCCCc--HHHHhhcCC-cee
Q 001707 820 ASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPFDLD--DAVIRRLPR-RIY 896 (1023)
Q Consensus 820 A~k~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~~~~~VlVIaTTN~p~~Ld--~aLlrRFd~-~I~ 896 (1023)
|+...-.||+||=..++- ....++.++...-+-+ ++...++|+=++.-.+..+ .+|-.+.+. -+-
T Consensus 178 ak~~~~DvvIvDTAGRl~----------ide~Lm~El~~Ik~~~--~P~E~llVvDam~GQdA~~~A~aF~e~l~itGvI 245 (451)
T COG0541 178 AKEEGYDVVIVDTAGRLH----------IDEELMDELKEIKEVI--NPDETLLVVDAMIGQDAVNTAKAFNEALGITGVI 245 (451)
T ss_pred HHHcCCCEEEEeCCCccc----------ccHHHHHHHHHHHhhc--CCCeEEEEEecccchHHHHHHHHHhhhcCCceEE
Confidence 888888999999887762 1223344443332223 2445566665543333222 233333321 123
Q ss_pred ecCCCHHHHHHH---HHHHHh--------cccc--CCccCHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001707 897 VDLPDAENRMKI---LRIFLA--------HESL--ESGFQFNELANATEGYSGSDLKNLCIAAAYRPVQELLEEERKLFI 963 (1023)
Q Consensus 897 V~lPd~eeR~~I---Lk~~L~--------~~~l--~~dvdl~~LA~~TeGySgaDL~~L~~~Aa~~Airr~l~~e~~~~~ 963 (1023)
+...|-+.|--- ++..+. .+.+ ...++-+.+|.+.-|. .|+..|++.|...--.+-.++-... .
T Consensus 246 lTKlDGdaRGGaALS~~~~tg~PIkFiGtGEki~dLE~F~P~R~asRILGM--GDv~sLvEk~~~~~d~e~a~~~~~k-l 322 (451)
T COG0541 246 LTKLDGDARGGAALSARAITGKPIKFIGTGEKIDDLEPFHPDRFASRILGM--GDVLSLIEKAEEVVDEEEAEKLAEK-L 322 (451)
T ss_pred EEcccCCCcchHHHhhHHHHCCCeEEEecCCCcccCCCcChHHHHHHhcCc--ccHHHHHHHHHHhhhHHHHHHHHHH-H
Confidence 334454444321 111111 1111 1345677888887764 5999999877654322111111100 0
Q ss_pred hhCCCCCCCCcCCCCHHHHHHHHHhhC
Q 001707 964 QRGKNDAAPVLRPLKLEDFIQSKAKVG 990 (1023)
Q Consensus 964 ~~~~~~~~~~~r~Lt~eDF~~Al~kv~ 990 (1023)
.. -..|++||.+-+++++
T Consensus 323 ~~---------g~FtL~Df~~Ql~~m~ 340 (451)
T COG0541 323 KK---------GKFTLEDFLEQLEQMK 340 (451)
T ss_pred Hh---------CCCCHHHHHHHHHHHH
Confidence 01 1488999987776543
No 487
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=95.46 E-value=0.044 Score=65.18 Aligned_cols=98 Identities=16% Similarity=0.286 Sum_probs=65.1
Q ss_pred CCeEEEEcCchhhhhhccCCccHHHHHHHHHHHHhcCCCCEEEEecccCCCCCccccccccccccccccccCCCCcchhh
Q 001707 485 QPLIVYFPDSSLWLSRAVPRCNRKEFVRKVEEMFDQLSGPVVLICGQNKNETGPKEKEKFTMILPNFGRLAKLPLPLQRL 564 (1023)
Q Consensus 485 ~p~Iiff~di~~~~~~s~~~~~~~~~~s~l~~~~~~~~g~v~vI~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 564 (1023)
.+.+|++|||+.+.... ..++.++.+|..+.+. |..+||+++..+. +
T Consensus 211 ~~dlLiiDDi~~l~~~~---~~~~~l~~~~n~l~~~--~~~iiits~~~p~----~------------------------ 257 (450)
T PRK00149 211 SVDVLLIDDIQFLAGKE---RTQEEFFHTFNALHEA--GKQIVLTSDRPPK----E------------------------ 257 (450)
T ss_pred cCCEEEEehhhhhcCCH---HHHHHHHHHHHHHHHC--CCcEEEECCCCHH----H------------------------
Confidence 57799999999864331 1345677777776664 4556665544322 0
Q ss_pred hcccccCCCcchHHHHhccc--cEEEEcCCChHHHHHHHHHHHHHHhhhhhhhhhHHHHHH
Q 001707 565 TEGLKATKRSDDNEIYNLFT--NVLSIHPPKEEDLLRTFNKQVEEDRRIVIYRSNLNELHK 623 (1023)
Q Consensus 565 vIGmTNR~d~iDeaL~rrFe--~~ieI~LPdee~Rl~Il~Iht~~~~~~~~~~~~v~~l~~ 623 (1023)
.+.++++|..||. ..++|.+||.+.|.+|++..... ......++-++.|+.
T Consensus 258 -------l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~~~~-~~~~l~~e~l~~ia~ 310 (450)
T PRK00149 258 -------LPGLEERLRSRFEWGLTVDIEPPDLETRIAILKKKAEE-EGIDLPDEVLEFIAK 310 (450)
T ss_pred -------HHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHHHHHHH-cCCCCCHHHHHHHHc
Confidence 0226788998996 58999999999999999988543 333344444555554
No 488
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=95.43 E-value=0.16 Score=55.92 Aligned_cols=131 Identities=12% Similarity=0.063 Sum_probs=86.3
Q ss_pred ceEEEEcCCC-ChHHHHHHHHHHHhCC---------cEEEEeccccc---hhhhhhHHHHHHHHHHHH----hhcCCeEE
Q 001707 766 KGILLFGPPG-TGKTLLAKALATEAGA---------NFISITGSTLT---SKWFGDAEKLTKALFSFA----SKLAPVII 828 (1023)
Q Consensus 766 ~gVLL~GPPG-TGKT~LArAIA~elg~---------~fi~vs~seL~---s~~~ge~e~~I~~lF~~A----~k~~PsII 828 (1023)
+..||.|..+ +||..++.-++..+-. .+..+....-. +... .-..++.+-..+ .....-|+
T Consensus 16 hAYLfeG~n~~~~~~~~~~f~~~~l~~~~i~~~~HPD~~~I~pe~~~~~~~~~I--~IdqIReL~~~l~~~p~~g~~KVi 93 (263)
T PRK06581 16 NSWLIEAENIEQALKDLEKFIYIKLFKNSIPLENNPDYHFIARETSATSNAKNI--SIEQIRKLQDFLSKTSAISGYKVA 93 (263)
T ss_pred heeeEeCCChhhHHHHHHHHHHHHHhccCcccCCCCCEEEEeccccccccCCcc--cHHHHHHHHHHHhhCcccCCcEEE
Confidence 5799999998 9999998888877622 23333322100 0111 122333333333 33345799
Q ss_pred EeccchhhhhccCCCchhHHHHHHHHHHHhhhcCccCCCCceEEEEEecCCCCCCcHHHHhhcCCceeecCCCHHHHHHH
Q 001707 829 FVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKI 908 (1023)
Q Consensus 829 fIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~~~~~VlVIaTTN~p~~Ld~aLlrRFd~~I~V~lPd~eeR~~I 908 (1023)
+|+++|.|. ....|.||..++.- +..+++|.+|..+..+.+.+++|+ ..+.++.|+...-.++
T Consensus 94 II~~ae~mt------------~~AANALLKtLEEP----P~~t~fILit~~~~~LLpTIrSRC-q~i~~~~p~~~~~~e~ 156 (263)
T PRK06581 94 IIYSAELMN------------LNAANSCLKILEDA----PKNSYIFLITSRAASIISTIRSRC-FKINVRSSILHAYNEL 156 (263)
T ss_pred EEechHHhC------------HHHHHHHHHhhcCC----CCCeEEEEEeCChhhCchhHhhce-EEEeCCCCCHHHHHHH
Confidence 999999984 23356777777663 345777777888999999999999 6788999988777777
Q ss_pred HHHHHhc
Q 001707 909 LRIFLAH 915 (1023)
Q Consensus 909 Lk~~L~~ 915 (1023)
....+..
T Consensus 157 ~~~~~~p 163 (263)
T PRK06581 157 YSQFIQP 163 (263)
T ss_pred HHHhccc
Confidence 7666543
No 489
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=95.43 E-value=0.074 Score=60.67 Aligned_cols=39 Identities=28% Similarity=0.333 Sum_probs=29.4
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHh------C---CcEEEEeccc
Q 001707 762 LRPCKGILLFGPPGTGKTLLAKALATEA------G---ANFISITGST 800 (1023)
Q Consensus 762 i~p~~gVLL~GPPGTGKT~LArAIA~el------g---~~fi~vs~se 800 (1023)
+.+..-+.|+||||+|||+|+..++... | ..+++++...
T Consensus 93 i~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~ 140 (316)
T TIGR02239 93 IETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEG 140 (316)
T ss_pred CCCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCC
Confidence 5666778999999999999999988632 1 2557776655
No 490
>PRK01184 hypothetical protein; Provisional
Probab=95.39 E-value=0.014 Score=60.48 Aligned_cols=29 Identities=34% Similarity=0.536 Sum_probs=25.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001707 767 GILLFGPPGTGKTLLAKALATEAGANFISI 796 (1023)
Q Consensus 767 gVLL~GPPGTGKT~LArAIA~elg~~fi~v 796 (1023)
-|+|+||||+||||+++ ++.+.|++++..
T Consensus 3 ~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~ 31 (184)
T PRK01184 3 IIGVVGMPGSGKGEFSK-IAREMGIPVVVM 31 (184)
T ss_pred EEEEECCCCCCHHHHHH-HHHHcCCcEEEh
Confidence 48899999999999987 788999888664
No 491
>PLN02674 adenylate kinase
Probab=95.39 E-value=0.015 Score=63.84 Aligned_cols=31 Identities=29% Similarity=0.513 Sum_probs=27.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 001707 765 CKGILLFGPPGTGKTLLAKALATEAGANFIS 795 (1023)
Q Consensus 765 ~~gVLL~GPPGTGKT~LArAIA~elg~~fi~ 795 (1023)
...|+|.||||+||+++|+.||..++++.+.
T Consensus 31 ~~~i~l~G~PGsGKgT~a~~La~~~~~~his 61 (244)
T PLN02674 31 DKRLILIGPPGSGKGTQSPIIKDEYCLCHLA 61 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHcCCcEEc
Confidence 4579999999999999999999999876654
No 492
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=95.38 E-value=0.015 Score=58.94 Aligned_cols=30 Identities=47% Similarity=0.660 Sum_probs=27.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001707 767 GILLFGPPGTGKTLLAKALATEAGANFISI 796 (1023)
Q Consensus 767 gVLL~GPPGTGKT~LArAIA~elg~~fi~v 796 (1023)
-|.|+|++|+|||++|+.+|..++++++..
T Consensus 2 iI~i~G~~GSGKstia~~la~~lg~~~~~~ 31 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKLSLKLISA 31 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCceecH
Confidence 388999999999999999999999987653
No 493
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.37 E-value=0.062 Score=54.99 Aligned_cols=74 Identities=19% Similarity=0.176 Sum_probs=44.4
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHhCC--cEEEEeccccch--------h---hh--hhHHHHHHHHHHHHhhcCCe
Q 001707 762 LRPCKGILLFGPPGTGKTLLAKALATEAGA--NFISITGSTLTS--------K---WF--GDAEKLTKALFSFASKLAPV 826 (1023)
Q Consensus 762 i~p~~gVLL~GPPGTGKT~LArAIA~elg~--~fi~vs~seL~s--------~---~~--ge~e~~I~~lF~~A~k~~Ps 826 (1023)
+.+...+.|.||.|+|||+|.+.++..... --+.++...+.. . +. =......+-.+..|--..|.
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~~qrl~laral~~~p~ 102 (163)
T cd03216 23 VRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQLSVGERQMVEIARALARNAR 102 (163)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEEecCHHHHHHHHHHHHHhcCCC
Confidence 345567999999999999999999876521 112222211110 0 00 01122334445556667899
Q ss_pred EEEeccchh
Q 001707 827 IIFVDEVDS 835 (1023)
Q Consensus 827 IIfIDEID~ 835 (1023)
||++||--.
T Consensus 103 illlDEP~~ 111 (163)
T cd03216 103 LLILDEPTA 111 (163)
T ss_pred EEEEECCCc
Confidence 999999754
No 494
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=95.36 E-value=0.13 Score=62.00 Aligned_cols=79 Identities=20% Similarity=0.201 Sum_probs=50.7
Q ss_pred cCCCCCCCceEEEEcCCCChHHHHHHHHHHH----hCCcEEEEeccccchhhh---------------------------
Q 001707 758 RGNLLRPCKGILLFGPPGTGKTLLAKALATE----AGANFISITGSTLTSKWF--------------------------- 806 (1023)
Q Consensus 758 ~~gli~p~~gVLL~GPPGTGKT~LArAIA~e----lg~~fi~vs~seL~s~~~--------------------------- 806 (1023)
.+| +.+...+||.||||||||+||..++.+ .|-+.+.++..+-.....
T Consensus 15 ~GG-lp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~eE~~~~l~~~~~~~G~~~~~~~~~g~l~~~~~~~~ 93 (484)
T TIGR02655 15 HGG-LPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFEESPQDIIKNARSFGWDLQKLVDEGKLFILDASPD 93 (484)
T ss_pred CCC-CCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCHHHHHHHHHHcCCCHHHHhhcCceEEEecCch
Confidence 345 566788999999999999999998543 256666665432111100
Q ss_pred ---------hhHHHHHHHHHHHHhhcCCeEEEeccchhhh
Q 001707 807 ---------GDAEKLTKALFSFASKLAPVIIFVDEVDSLL 837 (1023)
Q Consensus 807 ---------ge~e~~I~~lF~~A~k~~PsIIfIDEID~L~ 837 (1023)
-+....+..+........+..|+||-+..+.
T Consensus 94 ~~~~~~~~~~~l~~~l~~i~~~ls~g~~qRVvIDSl~aL~ 133 (484)
T TIGR02655 94 PEGQDVVGGFDLSALIERINYAIRKYKAKRVSIDSVTAVF 133 (484)
T ss_pred hccccccccCCHHHHHHHHHHHHHHhCCcEEEEeehhHhh
Confidence 0123344555555666678899999777664
No 495
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=95.36 E-value=0.011 Score=61.39 Aligned_cols=30 Identities=40% Similarity=0.598 Sum_probs=27.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001707 767 GILLFGPPGTGKTLLAKALATEAGANFISIT 797 (1023)
Q Consensus 767 gVLL~GPPGTGKT~LArAIA~elg~~fi~vs 797 (1023)
.|+|+|.||+|||++++.++ ++|.+++.++
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~ 31 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR-ELGYKVIELN 31 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH-HhCCceeeHH
Confidence 48999999999999999999 9999988754
No 496
>PF13245 AAA_19: Part of AAA domain
Probab=95.36 E-value=0.026 Score=51.17 Aligned_cols=23 Identities=48% Similarity=0.667 Sum_probs=16.8
Q ss_pred eEEEEcCCCChHH-HHHHHHHHHh
Q 001707 767 GILLFGPPGTGKT-LLAKALATEA 789 (1023)
Q Consensus 767 gVLL~GPPGTGKT-~LArAIA~el 789 (1023)
-+++.|||||||| ++++.++...
T Consensus 12 ~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 12 LFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH
Confidence 3666999999999 5555555554
No 497
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=95.35 E-value=0.081 Score=61.04 Aligned_cols=114 Identities=15% Similarity=0.163 Sum_probs=61.7
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHhC---------CcEEEEeccccch---------hh------------------
Q 001707 762 LRPCKGILLFGPPGTGKTLLAKALATEAG---------ANFISITGSTLTS---------KW------------------ 805 (1023)
Q Consensus 762 i~p~~gVLL~GPPGTGKT~LArAIA~elg---------~~fi~vs~seL~s---------~~------------------ 805 (1023)
+.+..-++|+|+||+|||.|+..+|.... ..+++++...-+. .+
T Consensus 120 ~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~qia~~~~~~~~~~l~~i~~~~~~~ 199 (342)
T PLN03186 120 IETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLIQIAERFGLNGADVLENVAYARAYN 199 (342)
T ss_pred CcCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHHHHHHHcCCChhhhccceEEEecCC
Confidence 45566788999999999999998875431 2577777654100 00
Q ss_pred hhhHHHHHHHHHHHHhhcCCeEEEeccchhhhhccCCCc-hhHHHHHHHHHHHhhhcCccCCCCceEEEEEec
Q 001707 806 FGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAF-EHEATRRMRNEFMSAWDGLRSKESQKILILGAT 877 (1023)
Q Consensus 806 ~ge~e~~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~-~~e~~~ril~~LL~~Ldgl~~~~~~~VlVIaTT 877 (1023)
.......+..+........+.+|+||-|-.++....... ....-...+..++..|..+... .++.||.|.
T Consensus 200 ~e~~~~ll~~~~~~~~~~~~~LIVIDSI~alfr~~~~~~g~l~~r~~~L~~~l~~L~~lA~~--~~vaVviTN 270 (342)
T PLN03186 200 TDHQSELLLEAASMMAETRFALMIVDSATALYRTEFSGRGELSARQMHLGKFLRSLQRLADE--FGVAVVITN 270 (342)
T ss_pred HHHHHHHHHHHHHHhhccCCCEEEEeCcHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHH--cCCEEEEEc
Confidence 000111222222333455789999999998865321111 1111122345555555444322 245555554
No 498
>PRK00889 adenylylsulfate kinase; Provisional
Probab=95.35 E-value=0.063 Score=55.21 Aligned_cols=37 Identities=30% Similarity=0.443 Sum_probs=29.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccc
Q 001707 765 CKGILLFGPPGTGKTLLAKALATEA---GANFISITGSTL 801 (1023)
Q Consensus 765 ~~gVLL~GPPGTGKT~LArAIA~el---g~~fi~vs~seL 801 (1023)
+.-|.|.|+||+|||++|++++..+ +..+..++...+
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~ 43 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAV 43 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccH
Confidence 4568999999999999999999987 445666665443
No 499
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=95.35 E-value=0.019 Score=64.96 Aligned_cols=72 Identities=26% Similarity=0.369 Sum_probs=46.6
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCC--cEEEEe-ccccch---hh---------hhhHHHHHHHHHHHHhhcCCeE
Q 001707 763 RPCKGILLFGPPGTGKTLLAKALATEAGA--NFISIT-GSTLTS---KW---------FGDAEKLTKALFSFASKLAPVI 827 (1023)
Q Consensus 763 ~p~~gVLL~GPPGTGKT~LArAIA~elg~--~fi~vs-~seL~s---~~---------~ge~e~~I~~lF~~A~k~~PsI 827 (1023)
....+++|.||+|+|||+|+++++..... .++.+. ..++.- .. .+...-....++..+.+..|.+
T Consensus 142 ~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied~~El~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~Lr~~pd~ 221 (308)
T TIGR02788 142 ASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIEDTREIFLPHPNYVHLFYSKGGQGLAKVTPKDLLQSCLRMRPDR 221 (308)
T ss_pred hCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEcCccccCCCCCCEEEEEecCCCCCcCccCHHHHHHHHhcCCCCe
Confidence 34468999999999999999999987632 222221 111110 00 0111233556777778889999
Q ss_pred EEeccch
Q 001707 828 IFVDEVD 834 (1023)
Q Consensus 828 IfIDEID 834 (1023)
|++||+-
T Consensus 222 ii~gE~r 228 (308)
T TIGR02788 222 IILGELR 228 (308)
T ss_pred EEEeccC
Confidence 9999996
No 500
>PRK12608 transcription termination factor Rho; Provisional
Probab=95.27 E-value=0.08 Score=61.58 Aligned_cols=25 Identities=32% Similarity=0.571 Sum_probs=22.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC
Q 001707 766 KGILLFGPPGTGKTLLAKALATEAG 790 (1023)
Q Consensus 766 ~gVLL~GPPGTGKT~LArAIA~elg 790 (1023)
..+||+||||||||+|++.+|+.+.
T Consensus 134 QR~LIvG~pGtGKTTLl~~la~~i~ 158 (380)
T PRK12608 134 QRGLIVAPPRAGKTVLLQQIAAAVA 158 (380)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHH
Confidence 3589999999999999999998773
Done!