Query 001707
Match_columns 1023
No_of_seqs 477 out of 3459
Neff 5.5
Searched_HMMs 29240
Date Tue Mar 26 16:54:55 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001707.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1004-1008//hhsearch_pdb/001707hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3cf2_A TER ATPase, transitiona 1.0 1 1 662.4 13.6 551 176-1012 198-764 (806)
2 1ypw_A Transitional endoplasmi 1.0 1 1 454.1 5.1 553 176-1012 198-764 (806)
3 4b4t_J 26S protease regulatory 1.0 1 1 388.1 26.0 252 723-996 141-396 (405)
4 4b4t_H 26S protease regulatory 1.0 1 1 380.7 25.1 262 723-1007 202-467 (467)
5 4b4t_M 26S protease regulatory 1.0 1 1 380.0 24.3 252 723-996 174-429 (434)
6 4b4t_I 26S protease regulatory 1.0 1 1 379.4 22.3 252 723-996 175-430 (437)
7 4b4t_L 26S protease subunit RP 1.0 1 1 377.5 22.6 252 723-996 174-429 (437)
8 3cf2_A TER ATPase, transitiona 1.0 1 1 367.4 14.4 283 723-1013 197-483 (806)
9 4b4t_K 26S protease regulatory 1.0 1 1 366.2 26.3 252 723-996 165-422 (428)
10 1xwi_A SKD1 protein; VPS4B, AA 1.0 1 1 330.9 28.9 285 724-1014 6-322 (322)
No 1
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=1.00 E-value=1 Score=662.37 Aligned_cols=551 Identities=25% Similarity=0.409 Sum_probs=451.1
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 65542135654430356988888643025576410100134468877304126897058899999999854099599842
Q 001707 176 KINISWDTFPYYINENTKSLLVECVGSHLKHKKFTATFGARLTSSSGRILLRSVPGTELYRERLIRALARELQVPLLVLD 255 (1023)
Q Consensus 176 ~~~vsfd~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~~l~~~s~rILL~~~pgsE~Yqe~LakALA~~~~a~LL~lD 255 (1023)
--+|+|+++.++ +..|..|.+.+..+|+|++++.+++ ....+.|||+|||| ....+||||+|++++++++.++
T Consensus 198 ~~~v~~~dIgGl--~~~~~~l~e~v~~pl~~p~~f~~~g---~~~p~GILL~GPPG--TGKT~LAraiA~elg~~~~~v~ 270 (806)
T 3cf2_A 198 LNEVGYDDIGGC--RKQLAQIKEMVELPLRHPALFKAIG---VKPPRGILLYGPPG--TGKTLIARAVANETGAFFFLIN 270 (806)
T ss_dssp SSSCCGGGCCSC--CTTHHHHHHHHHHHHHCCGGGTSCC---CCCCCEEEEECCTT--SCHHHHHHHHHTTTTCEEEEEE
T ss_pred CCCCCHHHHCCH--HHHHHHHHHHHHHHCCCHHHHHHCC---CCCCCEEEEECCCC--CCHHHHHHHHHHHHCCEEEEEE
T ss_conf 899990351499--9999999999998751989886358---99997589779899--9889999999997198399997
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf 67889977888889765777456650000112345740000134544568999557788879999731167636888654
Q 001707 256 SSVLAPYDFADDSSDCESDNYEETSESEVEDENDASNEEEWTSSNEARTDGSDSEADMQATAEAALKKLVPFNLEELEKK 335 (1023)
Q Consensus 256 s~~l~~~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~k~~~s~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 335 (1023)
.+.+.+. +
T Consensus 271 ~~~l~sk--------~---------------------------------------------------------------- 278 (806)
T 3cf2_A 271 GPEIMSK--------L---------------------------------------------------------------- 278 (806)
T ss_dssp HHHHHSS--------C----------------------------------------------------------------
T ss_pred HHHHHCC--------C----------------------------------------------------------------
T ss_conf 3795433--------3----------------------------------------------------------------
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 21655678644446567997422111247991898188842245651454101257999997422467878888766178
Q 001707 336 LSGELDSSSESSKSEAAEPSDTSKRLLKKGDRVKYIGPSVRVEADNRIILGKIMTSDGPKNAYTIIPDRALSSGQRGEVY 415 (1023)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gdrvk~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~g~v~ 415 (1023)
.
T Consensus 279 -~------------------------------------------------------------------------------ 279 (806)
T 3cf2_A 279 -A------------------------------------------------------------------------------ 279 (806)
T ss_dssp -T------------------------------------------------------------------------------
T ss_pred -C------------------------------------------------------------------------------
T ss_conf -1------------------------------------------------------------------------------
Q ss_pred EECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCH
Q ss_conf 45277112551355699998988875567899998322225654455664024567799999999730697599973922
Q 001707 416 EVNGDRAAVILDISADNKGEGEKDDKVAEQPARPPVYWIDVKHIEHDLDTQAEDCYIAMEALCEVLHSTQPLIVYFPDSS 495 (1023)
Q Consensus 416 e~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~e~~~~~~p~Iiff~di~ 495 (1023)
| .-.-.+..+|+.|+..+|+||||||+|
T Consensus 280 ---------------------g-------------------------------ese~~lr~lF~~A~~~~PsIIfIDEiD 307 (806)
T 3cf2_A 280 ---------------------G-------------------------------ESESNLRKAFEEAEKNAPAIIFIDELD 307 (806)
T ss_dssp ---------------------T-------------------------------HHHHHHHHHHHHHTTSCSEEEEEESGG
T ss_pred ---------------------H-------------------------------HHHHHHHHHHHHHHHCCCEEEEEEHHC
T ss_conf ---------------------6-------------------------------789999999999997299299985100
Q ss_pred HHHH--HCCCCCCHHHHHHHHHHHHHCCCC--CEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCC
Q ss_conf 4432--026776378999999998735899--999992256888994211221233454333457997200110022358
Q 001707 496 LWLS--RAVPRCNRKEFVRKVEEMFDQLSG--PVVLICGQNKNETGPKEKEKFTMILPNFGRLAKLPLPLQRLTEGLKAT 571 (1023)
Q Consensus 496 ~~~~--~s~~~~~~~~~~s~l~~~~~~~~g--~v~vI~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~LvIGmTnR 571 (1023)
.+.. .+...+...++++.|+++||++.. +|+ |||+|||
T Consensus 308 al~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~--------------------------------------VIaaTN~ 349 (806)
T 3cf2_A 308 AIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVI--------------------------------------VMAATNR 349 (806)
T ss_dssp GTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEE--------------------------------------EEEECSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEE--------------------------------------EEEECCC
T ss_conf 23344577887399999999999974666669879--------------------------------------9996698
Q ss_pred CCCCHHHHHH--CCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 9740499982--03617897689968799999999999755544223179999997630587443233454202455664
Q 001707 572 KRSDDNEIYN--LFTNVLSIHPPKEEDLLRTFNKQVEEDRRIVIYRSNLNELHKVLEDHELSCTDLLHVNTDGVILTKQR 649 (1023)
Q Consensus 572 ~d~iDeaL~r--rFe~~ieI~LPdee~Rl~Il~Ih~~k~~~~~~~~~~i~~la~~l~t~~~~gaDL~~Lct~a~lls~~~ 649 (1023)
++++|+||+| ||+++|+|++||.++|.+||++|+.++. ...+.++..++. .|.||+|+||.+||.+|++.+..+
T Consensus 350 ~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~--~~~dvdl~~lA~--~T~GfsgaDL~~Lv~eA~~~A~~r 425 (806)
T 3cf2_A 350 PNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMK--LADDVDLEQVAN--ETHGHVGADLAALCSEAALQAIRK 425 (806)
T ss_dssp TTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSE--ECTTCCHHHHHH--HCCSCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHCCCC--CCCCCCHHHHHH--HCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 0326988857863616886689798999999999856899--886438999997--568998999999999999999984
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCEEECHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 33467540112222467887469711347888999999841110004788522235544566321002646899988654
Q 001707 650 AEKVVGWAKNHYLSSCSFPSVKGQRLHLPRESLEIAILRLKEQETASRKPTQNLKNLAKDEYESNFVSAVVPPGEIGVRF 729 (1023)
Q Consensus 650 ~~~~V~~A~~~~l~~~~~~~v~~~ki~V~~~df~~al~~i~p~~~~~~~~~~~~~~l~~~efe~~~l~~iI~~~e~~v~f 729 (1023)
....+...... ......+.+.|+++||+.|+..++|+..+. +....+.++|
T Consensus 426 ~~~~i~~~~~~------~~~e~~~~~~v~~~Df~~Al~~~~ps~~r~-----------------------~~~~~p~v~w 476 (806)
T 3cf2_A 426 KMDLIDLEDET------IDAEVMNSLAVTMDDFRWALSQSNPSALRE-----------------------TVVEVPQVTW 476 (806)
T ss_dssp HHHHGGGTCCC------CSHHHHHHCEECTTHHHHHHSSSSCCCCCC-----------------------CCCBCCCCCS
T ss_pred CCCCCCCCCCC------CCHHHHCCCEEEHHHHHHHHHHCCCCCCCC-----------------------CCCCCCCCCH
T ss_conf 14512000133------204552255651999999997287831123-----------------------4445788788
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHH
Q ss_conf 44568299999999998720279011103998889924999948999399999999999299389994563111223118
Q 001707 730 DDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTSKWFGDA 809 (1023)
Q Consensus 730 dDI~Gle~vk~~L~e~V~~pL~~pelF~k~gl~~P~rgILL~GPPGTGKT~LAkAIA~elg~~fi~Is~seL~sk~~ges 809 (1023)
++++|++++++.|++.+.+|+.+|+.|.+.+ ..|++|+|||||||||||++|+|+|++++.+|+.+++++++++|.|++
T Consensus 477 ~diggl~~~k~~l~e~v~~p~~~p~~f~~~g-~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~~vGes 555 (806)
T 3cf2_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFG-MTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGES 555 (806)
T ss_dssp TTCCSCHHHHHHHTTTTTTTTTCSGGGSSSC-CCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTTTCSSC
T ss_pred HHHCCHHHHHHHHHHHHHHHHHCHHHHHHCC-CCCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEECCCHHHCCCCCHH
T ss_conf 8817889999999999975666899997148-888860798668778963999999998389668742411210334368
Q ss_pred HHHHHHHHHHHHHCCCEEEEECCCHHHHHCCCCC--CHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCHHH
Q ss_conf 9999999999861199489864301221025998--60578899999887641176677886099999428999995999
Q 001707 810 EKLTKALFSFASKLAPVIIFVDEVDSLLGARGGA--FEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPFDLDDAV 887 (1023)
Q Consensus 810 ek~I~~iF~~Akk~~PsIIfIDEID~L~~~r~~~--~~~e~~~ril~~LL~~Ldgl~~~~~~~VlVIaTTN~p~~LD~aL 887 (1023)
++.++.+|..|++.+||||||||||+|++.|+.. .++...++++++||.+||++.. ..+|+||||||+|+.||+++
T Consensus 556 e~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~--~~~V~vi~aTN~p~~lD~Al 633 (806)
T 3cf2_A 556 EANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMST--KKNVFIIGATNRPDIIDPAI 633 (806)
T ss_dssp HHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCS--SSSEEEECC-CCSSSSCHHH
T ss_pred HHHHHHHHHHHHHCCCCEEECHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCC--CCCEEEEEECCCCHHCCHHH
T ss_conf 9999999999997299635204256776315888889866999999999999748787--79989999379804389847
Q ss_pred HH--HCCCCEEECCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q ss_conf 81--068750206999999999999997004668755788999980499699999999999999999999999999985-
Q 001707 888 IR--RLPRRIYVDLPDAENRMKILRIFLAHESLESGFQFNELANATEGYSGSDLKNLCIAAAYRPVQELLEEERKLFIQ- 964 (1023)
Q Consensus 888 lr--RFd~~I~V~lPd~eeR~eILk~~l~~~~l~~dvDl~~LA~~teGySgaDL~~Lv~~Aa~~Airr~l~~e~~~~~~- 964 (1023)
+| ||++.|+|++|+.++|.+||+.++++..+..++|+..||..|+||||+||.++|.+|++.|+++.++........
T Consensus 634 lRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~~~~dl~~la~~t~g~SGadi~~l~~~A~~~a~r~~~~~~~~~~~~~ 713 (806)
T 3cf2_A 634 LRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERER 713 (806)
T ss_dssp HSTTTSCCEEEC-----CHHHHTTTTTSSCC--CCC----------------CHHHHHHHHHHHHHHHHHC---------
T ss_pred CCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 17785507999799699999999999856799987789999997689999999999999999999999998564443330
Q ss_pred -----HCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf -----078899987678779999999986399820014409999999998489
Q 001707 965 -----RGKNDAAPVLRPLKLEDFIQSKAKVGPSVAYDAASMNELRKWNEQYGE 1012 (1023)
Q Consensus 965 -----~~~~~~~~~~r~It~eDF~~Al~kv~Psvs~d~~~m~el~qW~e~yG~ 1012 (1023)
..........++|+++||..|+.+++||++.+. +..|.+|++.|+.
T Consensus 714 ~~~~~~~~~~~~~~~~~i~~~df~~al~~~~pSvs~~~--l~~y~~~~~~f~~ 764 (806)
T 3cf2_A 714 QTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDND--IRKYEMFAQTLQQ 764 (806)
T ss_dssp --------------CCC----CCTTTC-----------------CCCC-----
T ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHH--HHHHHHHHHHHHC
T ss_conf 15741001233456686479999999986799999999--9999999999725
No 2
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=1.00 E-value=1 Score=454.08 Aligned_cols=553 Identities=25% Similarity=0.416 Sum_probs=422.8
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 65542135654430356988888643025576410100134468877304126897058899999999854099599842
Q 001707 176 KINISWDTFPYYINENTKSLLVECVGSHLKHKKFTATFGARLTSSSGRILLRSVPGTELYRERLIRALARELQVPLLVLD 255 (1023)
Q Consensus 176 ~~~vsfd~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~~l~~~s~rILL~~~pgsE~Yqe~LakALA~~~~a~LL~lD 255 (1023)
.-.++|+++.++ +..+..|.+....++++++++..++ ......|||.|||| ....+||||||+..+.+++.++
T Consensus 198 ~~~v~~~di~G~--~~~~~~l~e~i~~~l~~~~~~~~l~---i~~~~~vLL~Gp~G--tGKTtLarala~~l~~~~i~v~ 270 (806)
T 1ypw_A 198 LNEVGYDDVGGC--RKQLAQIKEMVELPLRHPALFKAIG---VKPPRGILLYGPPG--TGKTLIARAVANETGAFFFLIN 270 (806)
T ss_dssp SSSCCGGGCCSC--SGGGGHHHHHHHHHHHCGGGGTSSC---CCCCCEEEECSCTT--SSHHHHHHHHHHTTTCEEEEEE
T ss_pred CCCCCHHHHCCH--HHHHHHHHHHHHHHHHCHHHHHHCC---CCCCCEEEEECCCC--CCHHHHHHHHHHHCCCCEEEEE
T ss_conf 578998882880--9999999999998742989998638---89997389989399--9879999999997199689997
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf 67889977888889765777456650000112345740000134544568999557788879999731167636888654
Q 001707 256 SSVLAPYDFADDSSDCESDNYEETSESEVEDENDASNEEEWTSSNEARTDGSDSEADMQATAEAALKKLVPFNLEELEKK 335 (1023)
Q Consensus 256 s~~l~~~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~k~~~s~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 335 (1023)
...+.+
T Consensus 271 ~~~l~~-------------------------------------------------------------------------- 276 (806)
T 1ypw_A 271 GPEIMS-------------------------------------------------------------------------- 276 (806)
T ss_dssp HHHHSS--------------------------------------------------------------------------
T ss_pred CHHHHH--------------------------------------------------------------------------
T ss_conf 557654--------------------------------------------------------------------------
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 21655678644446567997422111247991898188842245651454101257999997422467878888766178
Q 001707 336 LSGELDSSSESSKSEAAEPSDTSKRLLKKGDRVKYIGPSVRVEADNRIILGKIMTSDGPKNAYTIIPDRALSSGQRGEVY 415 (1023)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gdrvk~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~g~v~ 415 (1023)
.. .
T Consensus 277 ---~~----~---------------------------------------------------------------------- 279 (806)
T 1ypw_A 277 ---KL----A---------------------------------------------------------------------- 279 (806)
T ss_dssp ---SS----T----------------------------------------------------------------------
T ss_pred ---HH----H----------------------------------------------------------------------
T ss_conf ---41----0----------------------------------------------------------------------
Q ss_pred EECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCH
Q ss_conf 45277112551355699998988875567899998322225654455664024567799999999730697599973922
Q 001707 416 EVNGDRAAVILDISADNKGEGEKDDKVAEQPARPPVYWIDVKHIEHDLDTQAEDCYIAMEALCEVLHSTQPLIVYFPDSS 495 (1023)
Q Consensus 416 e~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~e~~~~~~p~Iiff~di~ 495 (1023)
| ...-.+..+|+.+....|.|+|+||++
T Consensus 280 ---------------------g-------------------------------~~~~~l~~vf~~a~~~~p~il~iDEid 307 (806)
T 1ypw_A 280 ---------------------G-------------------------------ESESNLRKAFEEAEKNAPAIIFIDELD 307 (806)
T ss_dssp ---------------------T-------------------------------HHHHHHHHHHHHHHHHCSEEEEEESGG
T ss_pred ---------------------H-------------------------------HHHHHHHHHHHHHHHCCCCEEEECCHH
T ss_conf ---------------------1-------------------------------589999999999986499579830077
Q ss_pred HHHHH--CCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCC
Q ss_conf 44320--2677637899999999873589999999225688899421122123345433345799720011002235897
Q 001707 496 LWLSR--AVPRCNRKEFVRKVEEMFDQLSGPVVLICGQNKNETGPKEKEKFTMILPNFGRLAKLPLPLQRLTEGLKATKR 573 (1023)
Q Consensus 496 ~~~~~--s~~~~~~~~~~s~l~~~~~~~~g~v~vI~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~LvIGmTnR~d 573 (1023)
.+... ..+.....++.+.|+.+|+++..+.- +++|++||+++
T Consensus 308 ~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~------------------------------------v~vI~atn~~~ 351 (806)
T 1ypw_A 308 AIAPKREKTHGEVERRIVSQLLTLMDGLKQRAH------------------------------------VIVMAATNRPN 351 (806)
T ss_dssp GTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSC------------------------------------CEEEEECSCTT
T ss_pred HHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCC------------------------------------EEEECCCCCCH
T ss_conf 751114666316889999999998654114661------------------------------------78760239810
Q ss_pred CCHHHHHH--CCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 40499982--0361789768996879999999999975554422317999999763058744323345420245566433
Q 001707 574 SDDNEIYN--LFTNVLSIHPPKEEDLLRTFNKQVEEDRRIVIYRSNLNELHKVLEDHELSCTDLLHVNTDGVILTKQRAE 651 (1023)
Q Consensus 574 ~iDeaL~r--rFe~~ieI~LPdee~Rl~Il~Ih~~k~~~~~~~~~~i~~la~~l~t~~~~gaDL~~Lct~a~lls~~~~~ 651 (1023)
.+|+++++ ||+++++|++|+.+.|++||+.++.+.. ...+.++..++. .+.+|.++|+..+|.+++.....+..
T Consensus 352 ~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~--l~~~~~l~~la~--~t~g~~g~dl~~l~~ea~~~a~r~~~ 427 (806)
T 1ypw_A 352 SIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMK--LADDVDLEQVAN--ETHGHVGADLAALCSEAALQAIRKKM 427 (806)
T ss_dssp TSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSC--CCTTCCTHHHHH--SCSSCCHHHHHHHHHHHHHHHHHHTT
T ss_pred HCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC--CCCCCHHHHHHH--HHCCCCHHHHHHHHHHHHHHHHHHHC
T ss_conf 04999864655444355699999999999999873387--762200677777--61475368999999999999876420
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCEEECHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 46754011222246788746971134788899999984111000478852223554456632100264689998865444
Q 001707 652 KVVGWAKNHYLSSCSFPSVKGQRLHLPRESLEIAILRLKEQETASRKPTQNLKNLAKDEYESNFVSAVVPPGEIGVRFDD 731 (1023)
Q Consensus 652 ~~V~~A~~~~l~~~~~~~v~~~ki~V~~~df~~al~~i~p~~~~~~~~~~~~~~l~~~efe~~~l~~iI~~~e~~v~fdD 731 (1023)
..+..... .+ .......+.++.++|..++....|+.. ...+ ...+.++|++
T Consensus 428 ~~i~~~~~-~~-----~~~~~~~~~v~~~d~~~al~~~~~s~~---------------------~~~~--~~~~~v~~~d 478 (806)
T 1ypw_A 428 DLIDLEDE-TI-----DAEVMNSLAVTMDDFRWALSQSNPSAL---------------------RETV--VEVPQVTWED 478 (806)
T ss_dssp TTTSCHHH-HC-----CHHHHTTCCCCTTHHHHHHHHSCCCCC---------------------CCCC--CCCCCCSSCS
T ss_pred CCCCHHHH-CC-----CHHHHHHHHHHHHHHHCCCCCCCCHHH---------------------HHHC--CCCCCCCCCC
T ss_conf 10115542-01-----012444555556653111123571444---------------------2000--2575421111
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHH
Q ss_conf 56829999999999872027901110399888992499994899939999999999929938999456311122311899
Q 001707 732 IGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTSKWFGDAEK 811 (1023)
Q Consensus 732 I~Gle~vk~~L~e~V~~pL~~pelF~k~gl~~P~rgILL~GPPGTGKT~LAkAIA~elg~~fi~Is~seL~sk~~gesek 811 (1023)
++|++++++.|.+++.+++.+++.|...+ +.++.++||+||||||||++|+++|.+++.+|+.++++++.++|.|+.+.
T Consensus 479 i~gl~~vk~~l~~~v~~~~~~~~~~~~~~-~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~~~~g~~~~ 557 (806)
T 1ypw_A 479 IGGLEDVKRELQELVQYPVEHPDKFLKFG-MTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEA 557 (806)
T ss_dssp SSCCCCHHHHHHTTTTSSSSSCTTTTCCC-CCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSSTTCCTTTSSH
T ss_pred CCCCHHHHHHHHHHHHHHHHCHHHHHHCC-CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECHHHHHHHCCCCHH
T ss_conf 24430222218999975553639897548-88775368977999878999999999848987998616765530575478
Q ss_pred HHHHHHHHHHHCCCEEEEECCCHHHHHCCCCC--CHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCHHHHH
Q ss_conf 99999999861199489864301221025998--6057889999988764117667788609999942899999599981
Q 001707 812 LTKALFSFASKLAPVIIFVDEVDSLLGARGGA--FEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPFDLDDAVIR 889 (1023)
Q Consensus 812 ~I~~iF~~Akk~~PsIIfIDEID~L~~~r~~~--~~~e~~~ril~~LL~~Ldgl~~~~~~~VlVIaTTN~p~~LD~aLlr 889 (1023)
.++.+|..|+...|+||||||||.+...+... .......+++++|+..|+++.. ...++||+|||+++.||++++|
T Consensus 558 ~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~~--~~~v~vI~tTN~~~~ld~allr 635 (806)
T 1ypw_A 558 NVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMST--KKNVFIIGATNRPDIIDPAILR 635 (806)
T ss_dssp HHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC--------CCBCCCCCBSCGGGSCTTSS
T ss_pred HHHHHHHHHHHCCCEEEEEECHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCC--CCCEEEEEECCCCCCCCHHHHC
T ss_conf 89999999870698599998744542112687777641689999999998754566--6876999843871227987837
Q ss_pred --HCCCCEEECCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
Q ss_conf --06875020699999999999999700466875578899998049969999999999999999999999999998507-
Q 001707 890 --RLPRRIYVDLPDAENRMKILRIFLAHESLESGFQFNELANATEGYSGSDLKNLCIAAAYRPVQELLEEERKLFIQRG- 966 (1023)
Q Consensus 890 --RFd~~I~V~lPd~eeR~eILk~~l~~~~l~~dvDl~~LA~~teGySgaDL~~Lv~~Aa~~Airr~l~~e~~~~~~~~- 966 (1023)
||+..|++++|+.++|..||+.++....+..++++..|+..+.||+++||.++|..|+..|+++.++.+........
T Consensus 636 pgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~l~~la~~t~g~sgadi~~l~~~a~~~a~~~~~~~~~~~~~~~~~ 715 (806)
T 1ypw_A 636 PGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQT 715 (806)
T ss_dssp GGGTTSCCCCCCCCCSHHHHHTTTTTSCC----CCCCSCSCGGGSSSCCHHHHHHHHHHHHHHHSCC-------------
T ss_pred CCCCCCEEECCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 65567305559979999999999986459997522799999735005999999999999999999999987766543014
Q ss_pred -----CCCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf -----8899987678779999999986399820014409999999998489
Q 001707 967 -----KNDAAPVLRPLKLEDFIQSKAKVGPSVAYDAASMNELRKWNEQYGE 1012 (1023)
Q Consensus 967 -----~~~~~~~~r~It~eDF~~Al~kv~Psvs~d~~~m~el~qW~e~yG~ 1012 (1023)
.........+|+++||..|+..++|+++.+. +..|.+|.+.+..
T Consensus 716 ~~~~~~~~~~~~~~~i~~~~f~~a~~~~~~svs~~~--~~~ye~~~~~~~~ 764 (806)
T 1ypw_A 716 NPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDND--IRKYEMFAQTLQQ 764 (806)
T ss_dssp -----------CCTTTTTTSSCCCCCC------------------------
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHH--HHHHHHHHHHHHH
T ss_conf 643123343466676079999999986789999999--9999999999976
No 3
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=388.10 Aligned_cols=252 Identities=34% Similarity=0.554 Sum_probs=231.8
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEEEECCCCC
Q ss_conf 99886544456829999999999872027901110399888992499994899939999999999929938999456311
Q 001707 723 GEIGVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLT 802 (1023)
Q Consensus 723 ~e~~v~fdDI~Gle~vk~~L~e~V~~pL~~pelF~k~gl~~P~rgILL~GPPGTGKT~LAkAIA~elg~~fi~Is~seL~ 802 (1023)
..|+++|+||+|+++++++|++.|.+|+.+|+.|.+.| +.|++|+|||||||||||++|+|+|++++.+|+.++++++.
T Consensus 141 ~~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~g-i~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~ 219 (405)
T 4b4t_J 141 KVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLG-IAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELV 219 (405)
T ss_dssp CSCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHT-CCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGS
T ss_pred CCCCCCHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHCC-CCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCEEEEHHHHH
T ss_conf 79999888828889999999999999874999998679-99888258858999987899999998518885288868951
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHCCCCCC--HHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCC
Q ss_conf 122311899999999998611994898643012210259986--057889999988764117667788609999942899
Q 001707 803 SKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAF--EHEATRRMRNEFMSAWDGLRSKESQKILILGATNRP 880 (1023)
Q Consensus 803 sk~~gesek~I~~iF~~Akk~~PsIIfIDEID~L~~~r~~~~--~~e~~~ril~~LL~~Ldgl~~~~~~~VlVIaTTN~p 880 (1023)
++|.|++++.++.+|..|+..+||||||||||.+++.|.... .....++++++||..||++.. ..+|+||||||+|
T Consensus 220 sk~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~--~~~V~vIaATNrp 297 (405)
T 4b4t_J 220 QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFET--SKNIKIIMATNRL 297 (405)
T ss_dssp CSSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTC--CCCEEEEEEESCS
T ss_pred CCCCCHHHHHHHHHHHHHHHHCCCEEEEECCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC--CCCEEEEECCCCH
T ss_conf 13354689999999999987099467653341111577888999768999999999996043388--8875788126981
Q ss_pred CCCCHHHHH--HCCCCEEECCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999599981--068750206999999999999997004668755788999980499699999999999999999999999
Q 001707 881 FDLDDAVIR--RLPRRIYVDLPDAENRMKILRIFLAHESLESGFQFNELANATEGYSGSDLKNLCIAAAYRPVQELLEEE 958 (1023)
Q Consensus 881 ~~LD~aLlr--RFd~~I~V~lPd~eeR~eILk~~l~~~~l~~dvDl~~LA~~teGySgaDL~~Lv~~Aa~~Airr~l~~e 958 (1023)
+.||++++| ||++.|+|++|+.++|.+||+.++++..+..++|+..||..|+||||+||.++|.+|++.|+++.
T Consensus 298 d~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl~~lA~~t~G~SGADi~~l~~eA~~~Air~~---- 373 (405)
T 4b4t_J 298 DILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVCTEAGMYALRER---- 373 (405)
T ss_dssp SSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTT----
T ss_pred HHCCHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC----
T ss_conf 4489967287767669976996999999999998559999965799999987799999999999999999999869----
Q ss_pred HHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCC
Q ss_conf 99998507889998767877999999998639982001
Q 001707 959 RKLFIQRGKNDAAPVLRPLKLEDFIQSKAKVGPSVAYD 996 (1023)
Q Consensus 959 ~~~~~~~~~~~~~~~~r~It~eDF~~Al~kv~Psvs~d 996 (1023)
...|+++||..|+.++.++....
T Consensus 374 ---------------~~~vt~~Df~~Al~~v~~~~~~~ 396 (405)
T 4b4t_J 374 ---------------RIHVTQEDFELAVGKVMNKNQET 396 (405)
T ss_dssp ---------------CSBCCHHHHHHHHHHHHHHHTCC
T ss_pred ---------------CCCCCHHHHHHHHHHHHCCCCCC
T ss_conf ---------------98759999999999985726555
No 4
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=380.66 Aligned_cols=262 Identities=33% Similarity=0.552 Sum_probs=236.7
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEEEECCCCC
Q ss_conf 99886544456829999999999872027901110399888992499994899939999999999929938999456311
Q 001707 723 GEIGVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLT 802 (1023)
Q Consensus 723 ~e~~v~fdDI~Gle~vk~~L~e~V~~pL~~pelF~k~gl~~P~rgILL~GPPGTGKT~LAkAIA~elg~~fi~Is~seL~ 802 (1023)
..|+++|+||+|++++|++|++.|.+|+.+|+.|.+.| +.|++|||||||||||||++|+|||++++.+|+.++++++.
T Consensus 202 e~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~G-i~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~ 280 (467)
T 4b4t_H 202 EKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLG-IDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELV 280 (467)
T ss_dssp SSCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHT-CCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGC
T ss_pred CCCCCCHHHHCCHHHHHHHHHHHHHHHHCCHHHHHHCC-CCCCCCEEEECCCCCCHHHHHHHHHHCCCCCEEEEEHHHHH
T ss_conf 79999878854599999999999998842999998779-99998147648999809999999984468986998869950
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHCCCCCC--HHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCC
Q ss_conf 122311899999999998611994898643012210259986--057889999988764117667788609999942899
Q 001707 803 SKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAF--EHEATRRMRNEFMSAWDGLRSKESQKILILGATNRP 880 (1023)
Q Consensus 803 sk~~gesek~I~~iF~~Akk~~PsIIfIDEID~L~~~r~~~~--~~e~~~ril~~LL~~Ldgl~~~~~~~VlVIaTTN~p 880 (1023)
++|.|++++.++.+|..|+..+||||||||+|.++..|.... ......++++++|..|++... ..+|+||+|||+|
T Consensus 281 sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~--~~~ViVIaATNrp 358 (467)
T 4b4t_H 281 QKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDP--RGNIKVMFATNRP 358 (467)
T ss_dssp CCSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCC--TTTEEEEEECSCT
T ss_pred CCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC--CCCEEEEECCCCC
T ss_conf 26677899999999999876178467522321101355676778627899999999998655578--8837988287893
Q ss_pred CCCCHHHHH--HCCCCEEECCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999599981--068750206999999999999997004668755788999980499699999999999999999999999
Q 001707 881 FDLDDAVIR--RLPRRIYVDLPDAENRMKILRIFLAHESLESGFQFNELANATEGYSGSDLKNLCIAAAYRPVQELLEEE 958 (1023)
Q Consensus 881 ~~LD~aLlr--RFd~~I~V~lPd~eeR~eILk~~l~~~~l~~dvDl~~LA~~teGySgaDL~~Lv~~Aa~~Airr~l~~e 958 (1023)
+.||++++| ||++.|+|++|+.++|.+||+.++++..+..++++..||..|+||||+||.++|.+|++.|+++.
T Consensus 359 d~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eAa~~Air~~---- 434 (467)
T 4b4t_H 359 NTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRAR---- 434 (467)
T ss_dssp TSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHT----
T ss_pred CCCCHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC----
T ss_conf 1179546366655079983896999999999998548999877799999977799999999999999999999838----
Q ss_pred HHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf 9999850788999876787799999999863998200144099999999
Q 001707 959 RKLFIQRGKNDAAPVLRPLKLEDFIQSKAKVGPSVAYDAASMNELRKWN 1007 (1023)
Q Consensus 959 ~~~~~~~~~~~~~~~~r~It~eDF~~Al~kv~Psvs~d~~~m~el~qW~ 1007 (1023)
...++++||..|++++.+....- .....|.+||
T Consensus 435 ---------------~~~it~~Df~~Al~kV~~g~~k~-s~~~~y~~~n 467 (467)
T 4b4t_H 435 ---------------RKVATEKDFLKAVDKVISGYKKF-SSTSRYMQYN 467 (467)
T ss_dssp ---------------CSSBCHHHHHHHHHHHHHHHCC------------
T ss_pred ---------------CCCCCHHHHHHHHHHHHCCCCCC-HHHHHHHHHC
T ss_conf ---------------87669999999999996474561-2578998619
No 5
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=379.98 Aligned_cols=252 Identities=33% Similarity=0.563 Sum_probs=232.8
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEEEECCCCC
Q ss_conf 99886544456829999999999872027901110399888992499994899939999999999929938999456311
Q 001707 723 GEIGVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLT 802 (1023)
Q Consensus 723 ~e~~v~fdDI~Gle~vk~~L~e~V~~pL~~pelF~k~gl~~P~rgILL~GPPGTGKT~LAkAIA~elg~~fi~Is~seL~ 802 (1023)
..|.++|+||+|++++|++|++.|.+|+.+|+.|.+.| +.|++|||||||||||||++|+|+|++++.+|+.++++++.
T Consensus 174 ~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g-~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~ 252 (434)
T 4b4t_M 174 EKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMG-IRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLV 252 (434)
T ss_dssp SSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHC-CCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGC
T ss_pred CCCCCCHHHCCCHHHHHHHHHHHHHHHHHCHHHHHHCC-CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEHHHHH
T ss_conf 89799867609579999999999999974999998679-99887268779499988999999999959988998644643
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHCCCCCCH--HHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCC
Q ss_conf 1223118999999999986119948986430122102599860--57889999988764117667788609999942899
Q 001707 803 SKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFE--HEATRRMRNEFMSAWDGLRSKESQKILILGATNRP 880 (1023)
Q Consensus 803 sk~~gesek~I~~iF~~Akk~~PsIIfIDEID~L~~~r~~~~~--~e~~~ril~~LL~~Ldgl~~~~~~~VlVIaTTN~p 880 (1023)
++|.|++++.++.+|..|+..+||||||||+|.+++.|..... .....+++++||..++++.. ..+|+||||||+|
T Consensus 253 ~~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~--~~~ViVIaaTNrp 330 (434)
T 4b4t_M 253 QMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSS--DDRVKVLAATNRV 330 (434)
T ss_dssp SSCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCS--SCSSEEEEECSSC
T ss_pred HCCCCHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCC--CCCEEEEEECCCC
T ss_conf 13456389999999999986199089603325665225778888746999999999997136688--8998999948992
Q ss_pred CCCCHHHHH--HCCCCEEECCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999599981--068750206999999999999997004668755788999980499699999999999999999999999
Q 001707 881 FDLDDAVIR--RLPRRIYVDLPDAENRMKILRIFLAHESLESGFQFNELANATEGYSGSDLKNLCIAAAYRPVQELLEEE 958 (1023)
Q Consensus 881 ~~LD~aLlr--RFd~~I~V~lPd~eeR~eILk~~l~~~~l~~dvDl~~LA~~teGySgaDL~~Lv~~Aa~~Airr~l~~e 958 (1023)
+.||++++| ||++.|+|++|+.++|.+||+.++++..+..++++..||..|+||||+||.++|.+|++.|+++.
T Consensus 331 ~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~sGADi~~l~~eA~~~a~r~~---- 406 (434)
T 4b4t_M 331 DVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELARSTDEFNGAQLKAVTVEAGMIALRNG---- 406 (434)
T ss_dssp CCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHT----
T ss_pred HHCCHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC----
T ss_conf 2339967157740389980895999999999998568999876799999986899899999999999999999869----
Q ss_pred HHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCC
Q ss_conf 99998507889998767877999999998639982001
Q 001707 959 RKLFIQRGKNDAAPVLRPLKLEDFIQSKAKVGPSVAYD 996 (1023)
Q Consensus 959 ~~~~~~~~~~~~~~~~r~It~eDF~~Al~kv~Psvs~d 996 (1023)
...|+++||..|+.+++|+.+..
T Consensus 407 ---------------~~~i~~~Df~~Al~~v~~~~~~~ 429 (434)
T 4b4t_M 407 ---------------QSSVKHEDFVEGISEVQARKSKS 429 (434)
T ss_dssp ---------------CSSBCHHHHHHHHHSCSSSCCCC
T ss_pred ---------------CCCCCHHHHHHHHHHHHCCCCCC
T ss_conf ---------------98769999999999973777757
No 6
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=379.38 Aligned_cols=252 Identities=33% Similarity=0.567 Sum_probs=231.7
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEEEECCCCC
Q ss_conf 99886544456829999999999872027901110399888992499994899939999999999929938999456311
Q 001707 723 GEIGVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLT 802 (1023)
Q Consensus 723 ~e~~v~fdDI~Gle~vk~~L~e~V~~pL~~pelF~k~gl~~P~rgILL~GPPGTGKT~LAkAIA~elg~~fi~Is~seL~ 802 (1023)
..+.++|+||+|+++++++|++.|.+|+.+|+.|.+.+ +.|++|||||||||||||++|+|+|++++.+|+.++++++.
T Consensus 175 ~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~G-i~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~ 253 (437)
T 4b4t_I 175 KSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMG-IKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELI 253 (437)
T ss_dssp SSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHT-CCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGC
T ss_pred CCCCCCCEECCCHHHHHHHHHHHHHHHHHCHHHHHHCC-CCCCCCCCEECCCCCHHHHHHHHHHHHHCCCEEEEEHHHHH
T ss_conf 68998600557699999999999999876999998679-99777884488999639999999999859987998879953
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHCCCCCC--HHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCC
Q ss_conf 122311899999999998611994898643012210259986--057889999988764117667788609999942899
Q 001707 803 SKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAF--EHEATRRMRNEFMSAWDGLRSKESQKILILGATNRP 880 (1023)
Q Consensus 803 sk~~gesek~I~~iF~~Akk~~PsIIfIDEID~L~~~r~~~~--~~e~~~ril~~LL~~Ldgl~~~~~~~VlVIaTTN~p 880 (1023)
++|.|++++.++.+|..|+..+||||||||||.++..|.... ......+++++||..+|+... ...|+||+|||+|
T Consensus 254 sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~--~~~ViVIaATNrp 331 (437)
T 4b4t_I 254 QKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDD--RGDVKVIMATNKI 331 (437)
T ss_dssp CSSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCC--SSSEEEEEEESCS
T ss_pred HCCCCHHHHHHHHHHHHHHHCCCCEEEEEHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC--CCCEEEEEECCCH
T ss_conf 14476699999999999986599189876122203667788877658999999999997247678--8997999957980
Q ss_pred CCCCHHHHH--HCCCCEEECCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999599981--068750206999999999999997004668755788999980499699999999999999999999999
Q 001707 881 FDLDDAVIR--RLPRRIYVDLPDAENRMKILRIFLAHESLESGFQFNELANATEGYSGSDLKNLCIAAAYRPVQELLEEE 958 (1023)
Q Consensus 881 ~~LD~aLlr--RFd~~I~V~lPd~eeR~eILk~~l~~~~l~~dvDl~~LA~~teGySgaDL~~Lv~~Aa~~Airr~l~~e 958 (1023)
+.||++++| ||++.|+|++|+.++|.+||+.++++..+..++|+..||..|+||||+||.++|.+|++.|+++.
T Consensus 332 d~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eA~~~Air~~---- 407 (437)
T 4b4t_I 332 ETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALRER---- 407 (437)
T ss_dssp TTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTT----
T ss_pred HHCCHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC----
T ss_conf 5559988648860279980896999999999999648999976799999976799989999999999999999848----
Q ss_pred HHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCC
Q ss_conf 99998507889998767877999999998639982001
Q 001707 959 RKLFIQRGKNDAAPVLRPLKLEDFIQSKAKVGPSVAYD 996 (1023)
Q Consensus 959 ~~~~~~~~~~~~~~~~r~It~eDF~~Al~kv~Psvs~d 996 (1023)
...|+++||..|++++.|+...+
T Consensus 408 ---------------~~~It~eDf~~Al~rv~~~~~~e 430 (437)
T 4b4t_I 408 ---------------RMQVTAEDFKQAKERVMKNKVEE 430 (437)
T ss_dssp ---------------CSCBCHHHHHHHHHHHHHHHCCC
T ss_pred ---------------CCCCCHHHHHHHHHHHHCCCCHH
T ss_conf ---------------99669999999999870798733
No 7
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=377.53 Aligned_cols=252 Identities=33% Similarity=0.624 Sum_probs=231.1
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEEEECCCCC
Q ss_conf 99886544456829999999999872027901110399888992499994899939999999999929938999456311
Q 001707 723 GEIGVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLT 802 (1023)
Q Consensus 723 ~e~~v~fdDI~Gle~vk~~L~e~V~~pL~~pelF~k~gl~~P~rgILL~GPPGTGKT~LAkAIA~elg~~fi~Is~seL~ 802 (1023)
..|.++|+||+|+++++++|++.|.+|+.+|+.|.+.| +.|++|||||||||||||++|+|+|++++.+|+.++++++.
T Consensus 174 ~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g-~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~ 252 (437)
T 4b4t_L 174 EQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVG-IKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIV 252 (437)
T ss_dssp ESCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHC-CCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTC
T ss_pred CCCCCCHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHCC-CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEHHHHC
T ss_conf 59998966717859999999999999874999998679-89787699989999849999999999859998998414620
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHCCCCCC--HHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCC
Q ss_conf 122311899999999998611994898643012210259986--057889999988764117667788609999942899
Q 001707 803 SKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAF--EHEATRRMRNEFMSAWDGLRSKESQKILILGATNRP 880 (1023)
Q Consensus 803 sk~~gesek~I~~iF~~Akk~~PsIIfIDEID~L~~~r~~~~--~~e~~~ril~~LL~~Ldgl~~~~~~~VlVIaTTN~p 880 (1023)
++|.|++++.++.+|..|+..+||||||||||.++..|.... ......+++++||..||++... .+|+||+|||+|
T Consensus 253 sk~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~--~~vivI~ATNrp 330 (437)
T 4b4t_L 253 DKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNL--GQTKIIMATNRP 330 (437)
T ss_dssp CSSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCT--TSSEEEEEESST
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCC--CCEEEEEECCCC
T ss_conf 552017899999999999863896464204433333334478875368999999999983466677--986999933990
Q ss_pred CCCCHHHHH--HCCCCEEECCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999599981--068750206999999999999997004668755788999980499699999999999999999999999
Q 001707 881 FDLDDAVIR--RLPRRIYVDLPDAENRMKILRIFLAHESLESGFQFNELANATEGYSGSDLKNLCIAAAYRPVQELLEEE 958 (1023)
Q Consensus 881 ~~LD~aLlr--RFd~~I~V~lPd~eeR~eILk~~l~~~~l~~dvDl~~LA~~teGySgaDL~~Lv~~Aa~~Airr~l~~e 958 (1023)
+.||++++| ||++.|+|++|+.++|.+||+.++.+..+..++|+..||..|+||||+||.++|.+|++.|+++.
T Consensus 331 ~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl~~lA~~t~G~sGADi~~l~~eA~~~air~~---- 406 (437)
T 4b4t_L 331 DTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRNCATEAGFFAIRDD---- 406 (437)
T ss_dssp TSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCHHHHHHTCCSCCHHHHHHHHHHHHHHHHHTT----
T ss_pred HHHCHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC----
T ss_conf 3318978277710200135996999999999998658999864589999976899999999999999999999869----
Q ss_pred HHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCC
Q ss_conf 99998507889998767877999999998639982001
Q 001707 959 RKLFIQRGKNDAAPVLRPLKLEDFIQSKAKVGPSVAYD 996 (1023)
Q Consensus 959 ~~~~~~~~~~~~~~~~r~It~eDF~~Al~kv~Psvs~d 996 (1023)
...|+++||..|++++.|+...+
T Consensus 407 ---------------~~~i~~~d~~~Al~~v~~~~k~e 429 (437)
T 4b4t_L 407 ---------------RDHINPDDLMKAVRKVAEVKKLE 429 (437)
T ss_dssp ---------------CSSBCHHHHHHHHHHHHHTCC--
T ss_pred ---------------CCCCCHHHHHHHHHHHHHCCCCC
T ss_conf ---------------98779999999999987503701
No 8
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=1.00 E-value=1 Score=367.40 Aligned_cols=283 Identities=33% Similarity=0.556 Sum_probs=242.6
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEEEECCCCC
Q ss_conf 99886544456829999999999872027901110399888992499994899939999999999929938999456311
Q 001707 723 GEIGVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLT 802 (1023)
Q Consensus 723 ~e~~v~fdDI~Gle~vk~~L~e~V~~pL~~pelF~k~gl~~P~rgILL~GPPGTGKT~LAkAIA~elg~~fi~Is~seL~ 802 (1023)
..+.++|+||+|+++++++|++.+.+|+.+|+.|.+.+ ..||+|||||||||||||+||+++|++++.+|+.++++++.
T Consensus 197 ~~~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g-~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~ 275 (806)
T 3cf2_A 197 SLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIG-VKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIM 275 (806)
T ss_dssp CSSSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCC-CCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHH
T ss_pred CCCCCCHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHCC-CCCCCEEEEECCCCCCHHHHHHHHHHHHCCEEEEEEHHHHH
T ss_conf 58999903514999999999999998751989886358-99997589779899988999999999719839999737954
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCC
Q ss_conf 12231189999999999861199489864301221025998605788999998876411766778860999994289999
Q 001707 803 SKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPFD 882 (1023)
Q Consensus 803 sk~~gesek~I~~iF~~Akk~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~~~~~VlVIaTTN~p~~ 882 (1023)
++|.|++++.++.+|..|++++||||||||||.+++.+... ..+..++++++|+.+|+++.. ..+|+||++||+++.
T Consensus 276 sk~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~-~~~~~~riv~~LL~~mdg~~~--~~~V~VIaaTN~~d~ 352 (806)
T 3cf2_A 276 SKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT-HGEVERRIVSQLLTLMDGLKQ--RAHVIVMAATNRPNS 352 (806)
T ss_dssp SSCTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTC-CCTTHHHHHHHHHTHHHHCCG--GGCEEEEEECSSTTT
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCEEEEEEHHCCCCCCCCCC-CCHHHHHHHHHHHHHHHCCCC--CCCEEEEEECCCHHH
T ss_conf 33316789999999999997299299985100233445778-873999999999999746666--698799996698032
Q ss_pred CCHHHHH--HCCCCEEECCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9599981--06875020699999999999999700466875578899998049969999999999999999999999999
Q 001707 883 LDDAVIR--RLPRRIYVDLPDAENRMKILRIFLAHESLESGFQFNELANATEGYSGSDLKNLCIAAAYRPVQELLEEERK 960 (1023)
Q Consensus 883 LD~aLlr--RFd~~I~V~lPd~eeR~eILk~~l~~~~l~~dvDl~~LA~~teGySgaDL~~Lv~~Aa~~Airr~l~~e~~ 960 (1023)
||++++| ||++.|++++|+.++|.+||+.++++..+..++++..||..|+||+|+||.++|.+|++.|+++.......
T Consensus 353 LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl~~lA~~T~GfsgaDL~~Lv~eA~~~A~~r~~~~i~~ 432 (806)
T 3cf2_A 353 IDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDL 432 (806)
T ss_dssp SCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred CCHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 69888578636168866897989999999998568998864389999975689989999999999999999841451200
Q ss_pred HHHHHCCCC--CCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 998507889--99876787799999999863998200144099999999984899
Q 001707 961 LFIQRGKND--AAPVLRPLKLEDFIQSKAKVGPSVAYDAASMNELRKWNEQYGEG 1013 (1023)
Q Consensus 961 ~~~~~~~~~--~~~~~r~It~eDF~~Al~kv~Psvs~d~~~m~el~qW~e~yG~~ 1013 (1023)
..... .......++++||..|+..++|+...+...-..-..|.+++|..
T Consensus 433 ----~~~~~~~e~~~~~~v~~~Df~~Al~~~~ps~~r~~~~~~p~v~w~diggl~ 483 (806)
T 3cf2_A 433 ----EDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLE 483 (806)
T ss_dssp ----TCCCCSHHHHHHCEECTTHHHHHHSSSSCCCCCCCCCBCCCCCSTTCCSCH
T ss_pred ----CCCCCCHHHHCCCEEEHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHCCHH
T ss_conf ----013320455225565199999999728783112344457887888817889
No 9
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=366.22 Aligned_cols=252 Identities=32% Similarity=0.508 Sum_probs=229.4
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEEEECCCCC
Q ss_conf 99886544456829999999999872027901110399888992499994899939999999999929938999456311
Q 001707 723 GEIGVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLT 802 (1023)
Q Consensus 723 ~e~~v~fdDI~Gle~vk~~L~e~V~~pL~~pelF~k~gl~~P~rgILL~GPPGTGKT~LAkAIA~elg~~fi~Is~seL~ 802 (1023)
..|+++|+||+|++++|+.|++.+.+|+.+|+.|.+.| +.|++|+|||||||||||++|+|+|++++++|+.++++++.
T Consensus 165 ~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g-~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~ 243 (428)
T 4b4t_K 165 EKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIG-IDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFV 243 (428)
T ss_dssp SSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHC-CCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTC
T ss_pred CCCCCCHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHCC-CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCHHH
T ss_conf 89999888851699999999999999873999998679-99886588889899888999999999867996999330443
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHCCCCC--CHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCC
Q ss_conf 12231189999999999861199489864301221025998--6057889999988764117667788609999942899
Q 001707 803 SKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGA--FEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRP 880 (1023)
Q Consensus 803 sk~~gesek~I~~iF~~Akk~~PsIIfIDEID~L~~~r~~~--~~~e~~~ril~~LL~~Ldgl~~~~~~~VlVIaTTN~p 880 (1023)
++|.|++++.++.+|..|+..+||||||||+|.++..|... .......+++++||..|||+.. ..+|+||||||+|
T Consensus 244 ~~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~--~~~v~vI~aTN~~ 321 (428)
T 4b4t_K 244 HKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQ--STNVKVIMATNRA 321 (428)
T ss_dssp CSSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCS--SCSEEEEEEESCS
T ss_pred CCCCCHHHHHHHHHHHHHHHCCCCEEECHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC--CCCEEEEEECCCH
T ss_conf 14546059999999999997399746300224330355678788871899999999998438787--7997999961981
Q ss_pred CCCCHHHHH--HCCCCEEEC-CCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999599981--068750206-99999999999999700466875578899998049969999999999999999999999
Q 001707 881 FDLDDAVIR--RLPRRIYVD-LPDAENRMKILRIFLAHESLESGFQFNELANATEGYSGSDLKNLCIAAAYRPVQELLEE 957 (1023)
Q Consensus 881 ~~LD~aLlr--RFd~~I~V~-lPd~eeR~eILk~~l~~~~l~~dvDl~~LA~~teGySgaDL~~Lv~~Aa~~Airr~l~~ 957 (1023)
+.||++++| ||++.|++| +|+.++|..||+.++++..+..++|+..||..|+||||+||.++|.+|++.|+++.
T Consensus 322 ~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl~~lA~~t~G~sgadi~~l~~eA~~~a~r~~--- 398 (428)
T 4b4t_K 322 DTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKN--- 398 (428)
T ss_dssp SSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTT---
T ss_pred HHCCHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC---
T ss_conf 55696663687515999819999999999999998557999963589999977799889999999999999999879---
Q ss_pred HHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHH-CCCCCCC
Q ss_conf 99999850788999876787799999999863-9982001
Q 001707 958 ERKLFIQRGKNDAAPVLRPLKLEDFIQSKAKV-GPSVAYD 996 (1023)
Q Consensus 958 e~~~~~~~~~~~~~~~~r~It~eDF~~Al~kv-~Psvs~d 996 (1023)
...|+++||..|+.++ +++.+.+
T Consensus 399 ----------------~~~i~~~d~~~A~~~~~~~~~~~~ 422 (428)
T 4b4t_K 399 ----------------RYVILQSDLEEAYATQVKTDNTVD 422 (428)
T ss_dssp ----------------CSSBCHHHHHHHHHHHSCSCCCSS
T ss_pred ----------------CCCCCHHHHHHHHHHHHCCCCCCC
T ss_conf ----------------987799999999997617668954
No 10
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=1.00 E-value=1 Score=330.93 Aligned_cols=285 Identities=39% Similarity=0.693 Sum_probs=245.9
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHH-CCCEEEEECCCCC
Q ss_conf 988654445682999999999987202790111039988899249999489993999999999992-9938999456311
Q 001707 724 EIGVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEA-GANFISITGSTLT 802 (1023)
Q Consensus 724 e~~v~fdDI~Gle~vk~~L~e~V~~pL~~pelF~k~gl~~P~rgILL~GPPGTGKT~LAkAIA~el-g~~fi~Is~seL~ 802 (1023)
.+.++|+||+|++.+++.|++.+.+|+.+++.|... ..|++++|||||||||||++|+++|+++ +.+|+.++++++.
T Consensus 6 ~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~--~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~ 83 (322)
T 1xwi_A 6 RPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGK--RTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLV 83 (322)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTT--CCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSC
T ss_pred CCCCCHHHHCCHHHHHHHHHHHHHHHHHCHHHHHCC--CCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEHHHHH
T ss_conf 999998873498999999999999987698977178--899954999899996099999999998089967998749977
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCC
Q ss_conf 12231189999999999861199489864301221025998605788999998876411766778860999994289999
Q 001707 803 SKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPFD 882 (1023)
Q Consensus 803 sk~~gesek~I~~iF~~Akk~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~~~~~VlVIaTTN~p~~ 882 (1023)
++|.|+.++.++.+|..++..+|+||||||||.+.+.+... .....++++++|+..++++.. ...+++||++||.++.
T Consensus 84 ~~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~-~~~~~~~~~~~ll~~ld~~~~-~~~~v~vI~atn~~~~ 161 (322)
T 1xwi_A 84 SKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSEN-ESEAARRIKTEFLVQMQGVGV-DNDGILVLGATNIPWV 161 (322)
T ss_dssp CSSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSC-CTTHHHHHHHHHHHHHHCSSS-CCTTEEEEEEESCTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHCCCCCCC-CCHHHHHHHHHHHHHHHCCCC-CCCCEEEEEECCCCCC
T ss_conf 64311999999999999986299589960478753556665-335899999999999743456-6888799996698565
Q ss_pred CCHHHHHHCCCCEEECCCCHHHHHHHHHHHHHCCCCC-CCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9599981068750206999999999999997004668-755788999980499699999999999999999999999999
Q 001707 883 LDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLE-SGFQFNELANATEGYSGSDLKNLCIAAAYRPVQELLEEERKL 961 (1023)
Q Consensus 883 LD~aLlrRFd~~I~V~lPd~eeR~eILk~~l~~~~l~-~dvDl~~LA~~teGySgaDL~~Lv~~Aa~~Airr~l~~e~~~ 961 (1023)
+|++++|||+..+++++|+.++|..|++.++...... .+.++..|+..++||+|+||..+|.+|++.|+++........
T Consensus 162 ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~A~~~a~r~~~~~~~~~ 241 (322)
T 1xwi_A 162 LDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQPVRKVQSATHFK 241 (322)
T ss_dssp SCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHHHHHHHHHHHHTHHHHHHHHCSEEE
T ss_pred CCHHHHHHCCEEEEECCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 89999931676899579699999999999972178889999999999976999999999999999999999998645555
Q ss_pred HHHH------------------------------CCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 9850------------------------------7889998767877999999998639982001440999999999848
Q 001707 962 FIQR------------------------------GKNDAAPVLRPLKLEDFIQSKAKVGPSVAYDAASMNELRKWNEQYG 1011 (1023)
Q Consensus 962 ~~~~------------------------------~~~~~~~~~r~It~eDF~~Al~kv~Psvs~d~~~m~el~qW~e~yG 1011 (1023)
.... ..........+|+++||..|+.+++||++.+. +..|.+|++.||
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~al~~~~ps~~~~~--~~~~~~~~~~~~ 319 (322)
T 1xwi_A 242 KVRGPSRADPNHLVDDLLTPCSPGDPGAIEMTWMDVPGDKLLEPVVSMSDMLRSLSNTKPTVNEHD--LLKLKKFTEDFG 319 (322)
T ss_dssp EEEEECSSCTTSEEEEEEEECCSSSTTEEECCGGGSCGGGBCCCCBCHHHHHHHHHTCCCSCCHHH--HHHHHHHHHTTC
T ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHH--HHHHHHHHHHHC
T ss_conf 421443333100000002556544410000121236500035787089999999986799999999--999999999974
Q ss_pred CCC
Q ss_conf 998
Q 001707 1012 EGG 1014 (1023)
Q Consensus 1012 ~~g 1014 (1023)
.+|
T Consensus 320 ~~~ 322 (322)
T 1xwi_A 320 QEG 322 (322)
T ss_dssp SCC
T ss_pred CCC
T ss_conf 699
Done!