BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001708
(1022 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1GAX|A Chain A, Crystal Structure Of Thermus Thermophilus Valyl-Trna
Synthetase Complexed With Trna(Val) And Valyl-Adenylate
Analogue
pdb|1GAX|B Chain B, Crystal Structure Of Thermus Thermophilus Valyl-Trna
Synthetase Complexed With Trna(Val) And Valyl-Adenylate
Analogue
pdb|1IVS|A Chain A, Crystal Structure Of Thermus Thermophilus Valyl-Trna
Synthetase Complexed With Trna(Val) And Valyl-Adenylate
Analogue
pdb|1IVS|B Chain B, Crystal Structure Of Thermus Thermophilus Valyl-Trna
Synthetase Complexed With Trna(Val) And Valyl-Adenylate
Analogue
pdb|1IYW|A Chain A, Preliminary Structure Of Thermus Thermophilus Ligand-Free
Valyl-Trna Synthetase
pdb|1IYW|B Chain B, Preliminary Structure Of Thermus Thermophilus Ligand-Free
Valyl-Trna Synthetase
Length = 862
Score = 584 bits (1506), Expect = e-167, Method: Compositional matrix adjust.
Identities = 341/826 (41%), Positives = 463/826 (56%), Gaps = 93/826 (11%)
Query: 143 MAKEYNPSSVEKSWYSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQD 202
+ K Y+P SVE W W + F+A+ KS KP FVI +PPPNVTG+LH+GHAL ++QD
Sbjct: 3 LPKAYDPKSVEPKWAEKWAKNP-FVANPKSGKPPFVIFMPPPNVTGSLHMGHALDNSLQD 61
Query: 203 TIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWKWKDE 262
+IR++RM G+ A+W+PG DHAGIATQVVVE+ L++E K TRHD+GRE+F+ VW+WK+E
Sbjct: 62 ALIRYKRMRGFEAVWLPGTDHAGIATQVVVERLLLKEGK-TRHDLGREKFLERVWQWKEE 120
Query: 263 YGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDLRLVNWDCVLR 322
GGTIL+Q +RLGAS DWSRE FTMDEKRS+AV AF R Y EGL YR RLVNW
Sbjct: 121 SGGTILKQLKRLGASADWSREAFTMDEKRSRAVRYAFSRYYHEGLAYRAPRLVNWCPRCE 180
Query: 323 TAISDIEVDYVDIPKREMRNVPGYEKQVEFGVLTSFAYPLEGGLGEIVVATTRVETMLGD 382
T +SD+EV+ P G L + Y +EGG G I +AT R ET+ D
Sbjct: 181 TTLSDLEVETEPTP----------------GKLYTLRYEVEGG-GFIEIATVRPETVFAD 223
Query: 383 TAIAIHPEDARYSHLHGKFAIHPFNGRKIPIICDAILVDPKFGTGAVKITPAHDPNDFDV 442
AIA+HPED RY HL GK A P IPI+ D V+ FGTGA+K+TPAHDP D+++
Sbjct: 224 QAIAVHPEDERYRHLLGKRARIPLTEVWIPILADPA-VEKDFGTGALKVTPAHDPLDYEI 282
Query: 443 GKRHNLEFINIFTDDGKINSNGGLE-FEGMPRFKAREAVNEALKKKGLYRGAKDNEMRLG 501
G+RH L+ +++ +G++ E G+ RF+AR E ++ G +D + L
Sbjct: 283 GERHGLKPVSVINLEGRMEGERVPEALRGLDRFEARRKAVELFREAGHLVKEEDYTIALA 342
Query: 502 LCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKLELIPRQYTAEWRRWLEAIRD 561
CSR +E I PQW++ +A E L + D + +P ++ WLE ++D
Sbjct: 343 TCSRCGTPIEYAIFPQWWLRMRPLAEEVLKGLRRGD---IAFVPERWKKVNMDWLENVKD 399
Query: 562 WCVSRQLWWGHQIPAWYVTLEDDELKELGSYNDHWIVARDEKEALAVANKKFSGKKFEMC 621
W +SRQLWWGHQIPAWY ++ + N V R E+ + + G +
Sbjct: 400 WNISRQLWWGHQIPAWYC-------EDCQAVN----VPRPERYLEDPTSCEACGSP-RLK 447
Query: 622 QDPDVLDTWFSSGLFPLSVLGWPDDTDDLKAFYPTSVLETGHDILFFWVARMVMLGIKLG 681
+D DV DTWFSS L+PLS LGWP++T+DLKAFYP VL TG+DILF WV+RM + G
Sbjct: 448 RDEDVFDTWFSSALWPLSTLGWPEETEDLKAFYPGDVLVTGYDILFLWVSRMEVSGYHFM 507
Query: 682 GEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLEGLHKRLEEGNLDPKELEV 741
GE PF V LH ++ D G+KMSKS GNVIDPLE++
Sbjct: 508 GERPFKTVLLHGLVLDEKGQKMSKSKGNVIDPLEMVE----------------------- 544
Query: 742 AKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLDIQRVVGYRQWCNKLWNAVRFSM 801
G DALRFAL+ I LD++ + R + NKL+NA RF +
Sbjct: 545 --------------RYGADALRFALIYLATGGQDIRLDLRWLEMARNFANKLYNAARFVL 590
Query: 802 SKLGEGFVPPLKLHPHNLPFSCKWILSVLNKAISRTASSLNSYEFSDAASTVYSWWQYQF 861
EGF + + +++ S L++ + + + + + AA VY +F
Sbjct: 591 LS-REGF----QAKEDTPTLADRFMRSRLSRGVEEITALYEALDLAQAAREVYELVWSEF 645
Query: 862 CDVFIEAIKPYFAGDNPAFASERSAAQHVLWVCLETGLRLLHPFMPFVTEELWQRLPQPK 921
CD ++EA KP N A + VL V L+LLHP MPF+T EL+Q L
Sbjct: 646 CDWYLEAAKPALKAGN---AHTLRTLEEVLAVL----LKLLHPMMPFLTSELYQAL---- 694
Query: 922 GCATKESIMLCEYPSAVEGWTDERAEFEMDLVESTVRCIRSLRAEV 967
KE + L +P G DE AE + ++ V +R+L+AE
Sbjct: 695 --TGKEELALEAWPEP--GGRDEEAERAFEALKQAVTAVRALKAEA 736
>pdb|1JZQ|A Chain A, Isoleucyl-Trna Synthetase Complexed With Isoleucyl-
Adenylate Analogue
pdb|1JZS|A Chain A, Isoleucyl-trna Synthetase Complexed With Mupirocin
pdb|1ILE|A Chain A, Isoleucyl-Trna Synthetase
Length = 821
Score = 179 bits (454), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 200/869 (23%), Positives = 347/869 (39%), Gaps = 105/869 (12%)
Query: 146 EYNPSSVEKSWYSWWENSGYF--IADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDT 203
E N +E+ ++W+ F +N+ P + + PP G H+GHA + +D
Sbjct: 7 EPNFPKLEEEVLAFWKREKIFQKSVENRKGGPRYTVYEGPPTANGLPHVGHAQARSYKDL 66
Query: 204 IIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVS----EVWKW 259
R++ M GY A G D G+ ++ VEKKL + K G E+F V+ +
Sbjct: 67 FPRYKTMRGYYAPRRAGWDTHGLPVELEVEKKLGLKSKREIEAYGIERFNQACRESVFTY 126
Query: 260 KDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDLRLVNWDC 319
+ E+ R+ +D T++ +++ + L+ GL+YRD ++V +
Sbjct: 127 EKEWEAFT----ERIAYWVDLEDAYATLEPTYIESIWWSLKNLFDRGLLYRDHKVVPYCP 182
Query: 320 VLRTAISDIEVD-----------YVDIPKREMRNVPGYEKQVEFGVLTSFAYPLEGGLGE 368
T +S EV YV P +E + + G EK + T+ + L G +
Sbjct: 183 RCGTPLSSHEVALGYKEIQDPSVYVRFPLKEPKKL-GLEK-ASLLIWTTTPWTLPGNVAA 240
Query: 369 IV-VATTRVETMLGDTAIAIHPEDARYSHLHGKFAIHPFNGRKIP--------------- 412
V T +GD A+ + R G + F G+ +
Sbjct: 241 AVHPEYTYAAFQVGDEALILEEGLGRKLLGEGTQVLKTFPGKALEGLPYTPPYPQALEKG 300
Query: 413 -IICDAILVDPKFGTGAVKITPAHDPNDFDVGKRHNLEFINIFTDDGKINSNGGLEFEGM 471
+ A V + GTG V PA D + + + L + ++GK+ F+G+
Sbjct: 301 YFVVLADYVSQEDGTGIVHQAPAFGAEDLETARVYGLPLLKTVDEEGKLLVE---PFKGL 357
Query: 472 PRFKAREAVNEALKKKGLYRGAKDNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALY 531
+A A+ L+ +GL + C R + + W++ N++ + L
Sbjct: 358 YFREANRAILRDLRGRGLLFKEESYLHSYPHCWRCSTPLMYYATESWFIK-NTLFKDEL- 415
Query: 532 AVMDDDKKKLELIPRQYTAEWRRWLEAIRDWCVSRQLWWGHQIPAWYVTLEDDELKELGS 591
+ ++++ + P + WL+ + DW +SR +WG +P W E + +GS
Sbjct: 416 --IRNNQEIHWVPPHIKEGRYGEWLKNLVDWALSRNRYWGTPLPIWVCQACGKE-EAIGS 472
Query: 592 YNDHWIVARDEKEALAVANKKFSGKKFEMC-------QDPDVLDTWFSSGLFPLSVLGWP 644
+ + A ++ + + C + P V+D W+ SG P + L +P
Sbjct: 473 FQELKARATKPLPEPFDPHRPYVDQVELACACGGTMRRVPYVIDVWYDSGAMPFASLHYP 532
Query: 645 DDTDDL-KAFYPTSVLETGHDILFFWVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKM 703
+ +++ + +P + G D W + LG+ L G + F V H +I D G+KM
Sbjct: 533 FEHEEVFRESFPADFIAEGIDQTRGWFNSLHQLGVMLFGSIAFKNVICHGLILDEKGQKM 592
Query: 704 SKSLGNVIDPLEVINGISLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALR 763
SKS GNV+DP ++I + G DALR
Sbjct: 593 SKSKGNVVDPWDIIR-------------------------------------KFGADALR 615
Query: 764 -FALVSYTAQSDK---INLDIQRVVGYRQWCNKLWNAVRFSMSKLGEGFVPPLK--LHPH 817
+ VS ++D+ NL + V R + LWN F ++ P LK P
Sbjct: 616 WYIYVSAPPEADRRFGPNLVRETV---RDYFLTLWNVYSFFVTYANLD-RPDLKNPPPPE 671
Query: 818 NLPFSCKWILSVLNKAISRTASSLNSYEFSDAASTVYSWWQYQFCDVFIEAIKPYFAGDN 877
P +W+L+ + I R +L +Y+ + +A + + ++ + F +
Sbjct: 672 KRPEMDRWLLARMQDLIQRVTEALEAYDPTTSARALRDFVVEDLSQWYVRRNRRRFWKNE 731
Query: 878 PAFASERSAAQHVLWVCLETGLRLLHPFMPFVTEELWQRLPQPKGCATKESIMLCEYPSA 937
A +R AA L+ L L PF PF+ E LWQ L + KES+ L ++P A
Sbjct: 732 DAL--DREAAYATLYEALVLVATLAAPFTPFLAEVLWQNLVRSVRLEAKESVHLADWPEA 789
Query: 938 VEGWTDERAEFEMDLVESTVRCIRSLRAE 966
DE +M V V R+ RA+
Sbjct: 790 DPALADEALVAQMRAVLKVVDLARAARAK 818
>pdb|1QU2|A Chain A, Insights Into Editing From An Ile-Trna Synthetase
Structure With Trna(Ile) And Mupirocin
pdb|1QU3|A Chain A, Insights Into Editing From An Ile-Trna Synthetase
Structure With Trna(Ile) And Mupirocin
pdb|1FFY|A Chain A, Insights Into Editing From An Ile-Trna Synthetase
Structure With Trna(Ile) And Mupirocin
Length = 917
Score = 175 bits (444), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 225/906 (24%), Positives = 361/906 (39%), Gaps = 181/906 (19%)
Query: 176 SFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKK 235
+F++ PP G LH+GHAL ++D I+R++ M G+ A +VPG D G+ + + KK
Sbjct: 49 TFILHDGPPYANGNLHMGHALNKILKDFIVRYKTMQGFYAPYVPGWDTHGLPIEQALTKK 108
Query: 236 LMRERKLTRHDIGREQFVSEVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAV 295
+ +K++ +F + ++ E + RRLG D++ T+ + A
Sbjct: 109 GVDRKKMST-----AEFREKCKEFALEQIELQKKDFRRLGVRGDFNDPYITLKPEYEAAQ 163
Query: 296 TEAFVRLYKEGLIYRDLRLVNWDCVLRTAISDIEVDYVDIPKREMRNVPGYEKQVEFGVL 355
F + +GLIY+ + V W +++++ E++Y D KR + + + GV+
Sbjct: 164 IRIFGEMADKGLIYKGKKPVYWSPSSESSLAEAEIEYHD--KRSASIYVAFNVKDDKGVV 221
Query: 356 TSFAYPLEGGLGEIVVATTRVETMLGDTAIAIHPE--------------------DARYS 395
+ A + ++ TT T+ + AI +HPE DA
Sbjct: 222 DADA--------KFIIWTTTPWTIPSNVAITVHPELKYGQYNVNGEKYIIAEALSDAVAE 273
Query: 396 HLH-------------GK-----FAIHPFNGRKIPII-CDAILVDPKFGTGAVKITPAHD 436
L GK A HPF R+ +I D + D GTG V P H
Sbjct: 274 ALDWDKASIKLEKEYTGKELEWVVAQHPFLDRESLVINGDHVTTDA--GTGCVHTAPGHG 331
Query: 437 PNDFDVGKRHNLEFINIFTDDGKINSNGGLEFEGMPRFKAREAVNEALKKKGLYRGAKDN 496
+D+ VG+++ L I+ D G GG +FEGM KA +AV + L +KG
Sbjct: 332 EDDYIVGQQYELPVISPIDDKGVFTEEGG-QFEGMFYDKANKAVTDLLTEKGAL------ 384
Query: 497 EMRLGLCSRSN----DVVEPMI---KPQWYVNCNSMAMEALYAVMDDDKKKLELIPRQYT 549
++L + S +P+I PQW+ + + + + L A+ + + +
Sbjct: 385 -LKLDFITHSYPHDWRTKKPVIFRATPQWFASISKVRQDILDAIENTN----------FK 433
Query: 550 AEW--RRWLEAIRD---WCVSRQLWWGHQIPAWY------------VTLEDDELKELGSY 592
W R +RD W +SRQ WG +P +Y V D E GS
Sbjct: 434 VNWGKTRIYNMVRDRGEWVISRQRVWGVPLPVFYAENGEIIMTKETVNHVADLFAEHGS- 492
Query: 593 NDHWIVARDEKEALAVANKKFSGKKFEMCQDPDVLDTWFSSGLFPLSVLGWPDDTDDLKA 652
+ W R+ K+ L ++ D++D WF SG VL +
Sbjct: 493 -NIWF-EREAKDLLPEGFTHPGSPNGTFTKETDIMDVWFDSGSSHRGVLETRPELS---- 546
Query: 653 FYPTSVLETGHDILFFWVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGNVID 712
+P + G D W + + G P+ + H + D G+KMSKSLGNVI
Sbjct: 547 -FPADMYLEGSDQYRGWFNSSITTSVATRGVSPYKFLLSHGFVMDGEGKKMSKSLGNVIV 605
Query: 713 PLEVINGISLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQ 772
P +V+ + G D R + S
Sbjct: 606 PDQVVK-------------------------------------QKGADIARLWVSSTDYL 628
Query: 773 SD-KINLDI--QRVVGYRQWCNKLWNAVRFSMSKLGEGFVPPLKLHPHNLPFSCKWILSV 829
+D +I+ +I Q YR K+ N +RF + + + F P P + L
Sbjct: 629 ADVRISDEILKQTSDDYR----KIRNTLRFMLGNIND-FNPDTDSIPESELLEVDRYL-- 681
Query: 830 LNKAISRTASSLNSYEFSDAASTVYSWWQYQFCDVFIEAIKPYF---AGDNPAFASERS- 885
LN+ TAS++N+YE D + YQ FI F G + + +R
Sbjct: 682 LNRLREFTASTINNYENFDYLNI------YQEVQNFINVELSNFYLDYGKDILYIEQRDS 735
Query: 886 ----AAQHVLWVCLETGLRLLHPFMPFVTEELWQRLPQPKGCATKESIMLCEYPSAVE-- 939
+ Q VL+ L +LL P + EE+W P K +ES+ L + P VE
Sbjct: 736 HIRRSMQTVLYQILVDMTKLLAPILVHTAEEVWSHTPHVK----EESVHLADMPKVVEVD 791
Query: 940 -GWTDERAEFEMDLVESTVRCIRSLRAE-VLGKQKNERLPAIAFCQTKGVSEIIRS---- 993
D+ F M+L + R + + R E V+GK ++ IA SE + S
Sbjct: 792 QALLDKWRTF-MNLRDDVNRALETARNEKVIGKSLEAKV-TIASNDKFNASEFLTSFDAL 849
Query: 994 HELEIV 999
H+L IV
Sbjct: 850 HQLFIV 855
>pdb|1WZ2|A Chain A, The Crystal Structure Of Leucyl-Trna Synthetase And
Trna(Leucine) Complex
pdb|1WZ2|B Chain B, The Crystal Structure Of Leucyl-Trna Synthetase And
Trna(Leucine) Complex
Length = 967
Score = 119 bits (299), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 208/958 (21%), Positives = 358/958 (37%), Gaps = 251/958 (26%)
Query: 146 EYNPSSVEKSWYSWWENSGYFIAD--NKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDT 203
E N ++E+ W W + F + +K + F I + P ++G LH+GHA T I D
Sbjct: 3 ELNFKAIEEKWQKRWLEAKIFEPNIRDKPKEKKFYITVAFPYLSGHLHVGHARTYTIPDV 62
Query: 204 IIRWRRMSGYNALW-----VPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQF-VSEVW 257
I R++RM GYN L+ + G GIA ++ + R I R+ + V E
Sbjct: 63 IARFKRMQGYNVLFPMAWHITGSPIVGIAERI-------KNRDPKTIWIYRDVYKVPEEI 115
Query: 258 KWKDEYGGTILRQQR--------RLGASLDWSRECFTMD--EKRSKAVTEAFVRLYKEGL 307
W E I++ R G S+DWSRE +T SK + F +L ++G
Sbjct: 116 LWTFEDPINIVKYFMKAAKETFIRAGFSVDWSREFYTTSLFPPFSKFIEWQFWKLKEKGY 175
Query: 308 IYRDLRLVNWDCVLRTAISDIEVDYVDIPKREMRNVPGYEKQVEFGVLTSFAYPLEGGLG 367
I + V WD V+ T + D ++ E +VP + ++ F G +
Sbjct: 176 IVKGAHRVRWDPVVGTPLGDHDL-------MEGEDVPILDY-----IIIKFELRENGEVI 223
Query: 368 EIVVATTRVETMLGDTAIAIHP-------------------------------------- 389
+ AT R ET+ G T + ++P
Sbjct: 224 YLPAATLRPETVYGVTNMWVNPNATYVKAKVRRKDKEETWIVSKEAAYKLSFQDREIEVI 283
Query: 390 EDARYSHLHGKFAIHPFNGRKIPIICDAILVDPKFGTGAVKITPAHDPND---------- 439
E+ + L GK+ +P +G ++ II A VDP TG V PAH P D
Sbjct: 284 EEFKGEKLIGKYVRNPVSGDEV-IILPAEFVDPDNATGVVMSVPAHAPFDHVALEDLKRE 342
Query: 440 ------FDVGKR--HNLEFINIFTDDG--------KINSNG--------GLE-------- 467
+D+ R N+ +I++ +G ++N G LE
Sbjct: 343 TEILEKYDIDPRIVENITYISLIKLEGYGDFPAVEEVNKLGIKSQKDKEKLEQATKTIYK 402
Query: 468 ------------FEGMPRFKAREAVNEALKKKG----LYRGAKDNEMRLGLCSR-SNDVV 510
+EG P + +EA+ + + +KG +Y A+ N + SR N V
Sbjct: 403 AEYHKGIFKVPPYEGKPVQEVKEAIAKEMLEKGIAEIMYEFAEKN-----VISRFGNRAV 457
Query: 511 EPMIKPQWYVNCNS-----MAMEALYAVMDDDKKKLELIPRQYTAEWRRWLEAIRDW--- 562
+I QW+++ + A +AL ++++++P A+ EAI DW
Sbjct: 458 IKIIHDQWFIDYGNPEWKEKARKAL--------ERMKILPETRRAQ----FEAIIDWLDK 505
Query: 563 -CVSRQLWWGHQIPAWYVTLEDDELKELGSYNDHWIVARDEKEALAVANKKFSGKKFEMC 621
+R++ G +P W + L + Y ++ ++R + + GK
Sbjct: 506 KACARKIGLGTPLP-WDPEWVIESLSDSTIYMAYYTISRH------INKLRQEGK----- 553
Query: 622 QDPDVLDTWFSSGLF-----------PLSVLGWPDDT-----DDLKAFYPTSVLETGHDI 665
DP+ L F +F G P + ++ + +YP +G D+
Sbjct: 554 LDPEKLTPEFFDYIFLEEFSEDKEKELEKKTGIPAEIIHEMKEEFEYWYPLDWRCSGKDL 613
Query: 666 LFFWVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLEGL 725
+ + + + + E + K G+KMSKS GNV+
Sbjct: 614 IPNHLTFFIFNHVAIFREEHWPKGIAVNGFGTLEGQKMSKSKGNVL-------------- 659
Query: 726 HKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLDIQRVVG 785
+F + I E G D +R ++S + + V
Sbjct: 660 -----------------------NFIDAIEENGADVVRLYIMSLAEHDSDFDWRRKEVGK 696
Query: 786 YRQWCNKLWNAVRFSMSKLGEGFVPPLKLHPHNLPFSCKWILSVLNKAISRTASSLNSYE 845
R+ + + + +G V L +W+L LNKAI T ++L +
Sbjct: 697 LRKQIERFYELISQFAEYEVKGNV--------ELKDIDRWMLHRLNKAIKETTNALEEFR 748
Query: 846 FSDAASTVYSWWQYQFCDVFIEAIKPYFAGDNPAFASERSAAQHVLWVCLETGLRLLHPF 905
T W Y + ++ D+ A ++VL + +RL+ PF
Sbjct: 749 ----TRTAVQWAFYSIMNDLRWYLRRTEGRDD-------EAKRYVLRTLADVWVRLMAPF 797
Query: 906 MPFVTEELWQRLPQPKGCATKESIMLCEYPSAVEGWTDERAEFEMDLVESTVRCIRSL 963
P + EELW++L + + L ++P VE W +E E E + + S + I+ +
Sbjct: 798 TPHICEELWEKL------GGEGFVSLAKWPEPVEEWWNETIEAEEEFIRSVMEDIKEI 849
>pdb|1WK9|A Chain A, Structural Basis For Non-Cognate Amino Acid Discrimination
By The Valyl-Trna Synthetase Editing Domain
Length = 146
Score = 108 bits (270), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 60/137 (43%), Positives = 84/137 (61%), Gaps = 3/137 (2%)
Query: 353 GVLTSFAYPLEGGLGEIVVATTRVETMLGDTAIAIHPEDARYSHLHGKFAIHPFNGRKIP 412
G L + Y +EGG G I +AT R ET+ D AIA+HPED RY HL GK A P IP
Sbjct: 4 GKLYTLRYEVEGG-GFIEIATVRPETVFADQAIAVHPEDERYRHLLGKRARIPLTEVWIP 62
Query: 413 IICDAILVDPKFGTGAVKITPAHDPNDFDVGKRHNLEFINIFTDDGKINSNGGLE-FEGM 471
I+ D V+ FGTGA+K+TPAHDP D+++G+RH L+ +++ +G++ E G+
Sbjct: 63 ILADPA-VEKDFGTGALKVTPAHDPLDYEIGERHGLKPVSVINLEGRMEGERVPEALRGL 121
Query: 472 PRFKAREAVNEALKKKG 488
RF+AR E ++ G
Sbjct: 122 DRFEARRKAVELFREAG 138
>pdb|1WKA|A Chain A, Structural Basis For Non-Cognate Amino Acid Discrimination
By The Valyl-Trna Synthetase Editing Domain
Length = 147
Score = 108 bits (270), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 60/137 (43%), Positives = 84/137 (61%), Gaps = 3/137 (2%)
Query: 353 GVLTSFAYPLEGGLGEIVVATTRVETMLGDTAIAIHPEDARYSHLHGKFAIHPFNGRKIP 412
G L + Y +EGG G I +AT R ET+ D AIA+HPED RY HL GK A P IP
Sbjct: 4 GKLYTLRYEVEGG-GFIEIATVRPETVFADQAIAVHPEDERYRHLLGKRARIPLTEVWIP 62
Query: 413 IICDAILVDPKFGTGAVKITPAHDPNDFDVGKRHNLEFINIFTDDGKINSNGGLE-FEGM 471
I+ D V+ FGTGA+K+TPAHDP D+++G+RH L+ +++ +G++ E G+
Sbjct: 63 ILADPA-VEKDFGTGALKVTPAHDPLDYEIGERHGLKPVSVINLEGRMEGERVPEALRGL 121
Query: 472 PRFKAREAVNEALKKKG 488
RF+AR E ++ G
Sbjct: 122 DRFEARRKAVELFREAG 138
>pdb|1WKB|A Chain A, Crystal Structure Of Leucyl-Trna Synthetase From The
Archaeon Pyrococcus Horikoshii Reveals A Novel Editing
Domain Orientation
Length = 810
Score = 107 bits (267), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 197/907 (21%), Positives = 336/907 (37%), Gaps = 235/907 (25%)
Query: 146 EYNPSSVEKSWYSWWENSGYFIAD--NKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDT 203
E N ++E+ W W + F + +K + F I + P ++G LH+GHA T I D
Sbjct: 3 ELNFKAIEEKWQKRWLEAKIFEPNIRDKPKEKKFYITVAFPYLSGHLHVGHARTYTIPDV 62
Query: 204 IIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQF-VSEVWKWKDE 262
I R++RM GYN L+ G + E+ R+ K I R+ + V E W E
Sbjct: 63 IARFKRMQGYNVLFPMAWHITGSPIVGIAERIKNRDPKTIW--IYRDVYKVPEEILWTFE 120
Query: 263 YGGTILRQQR--------RLGASLDWSRECFTMD--EKRSKAVTEAFVRLYKEGLIYRDL 312
I++ R G S+DWSRE +T SK + F +L ++G I +
Sbjct: 121 DPINIVKYFMKAAKETFIRAGFSVDWSREFYTTSLFPPFSKFIEWQFWKLKEKGYIVKGA 180
Query: 313 RLVNWDCVLRTAISDIEVDYVDIPKREMRNVPGYEKQVEFGVLTSFAYPLEGGLGEIVVA 372
V WD V+ T + D ++ E +VP + ++ F G + + A
Sbjct: 181 HRVRWDPVVGTPLGDHDL-------MEGEDVPILDY-----IIIKFELRENGEVIYLPAA 228
Query: 373 TTRVETMLGDTAIAIHP--------------------------------------EDARY 394
T R ET+ G T + ++P E+ +
Sbjct: 229 TLRPETVYGVTNMWVNPNATYVKAKVRRKDKEETWIVSKEAAYKLSFQDREIEVIEEFKG 288
Query: 395 SHLHGKFAIHPFNGRKIPIICDAILVDPKFGTGAVKITPAHDPND--------------- 439
L GK+ +P +G ++ II A VDP TG V PAH P D
Sbjct: 289 EKLIGKYVRNPVSGDEV-IILPAEFVDPDNATGVVMSVPAHAPFDHVALEDLKRETEILE 347
Query: 440 -FDVGKR--HNLEFINIFTDDG--------KINSNG--------GLE------------- 467
+D+ R N+ +I++ +G ++N G LE
Sbjct: 348 KYDIDPRIVENITYISLIKLEGYGDFPAVEEVNKLGIKSQKDKEKLEQATKTIYKAEYHK 407
Query: 468 -------FEGMPRFKAREAVNEALKKKG----LYRGAKDNEMRLGLCSR-SNDVVEPMIK 515
+EG P + +EA+ + + +KG +Y A+ N + SR N V +I
Sbjct: 408 GIFKVPPYEGKPVQEVKEAIAKEMLEKGIAEIMYEFAEKN-----VISRFGNRAVIKIIH 462
Query: 516 PQWYVNCNS-----MAMEALYAVMDDDKKKLELIPRQYTAEWRRWLEAIRDW----CVSR 566
QW+++ + A +AL ++++++P A+ EAI DW +R
Sbjct: 463 DQWFIDYGNPEWKEKARKAL--------ERMKILPETRRAQ----FEAIIDWLDKKACAR 510
Query: 567 QLWWGHQIPAWYVTLEDDELKELGSYNDHWIVARDEKEALAVANKKFSGKKFEMCQDPDV 626
++ G +P W + L + Y ++ ++R + + GK DP+
Sbjct: 511 KIGLGTPLP-WDPEWVIESLSDSTIYMAYYTISRH------INKLRQEGK-----LDPEK 558
Query: 627 LDTWFSSGLF-----------PLSVLGWPDDT-----DDLKAFYPTSVLETGHDILFFWV 670
L F +F G P + ++ + +YP +G D++ +
Sbjct: 559 LTPEFFDYIFLEEFSEDKEKELEKKTGIPAEIIHEMKEEFEYWYPLDWRCSGKDLIPNHL 618
Query: 671 ARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLEGLHKRLE 730
+ + + E + K G+KMSKS GNV+
Sbjct: 619 TFFIFNHVAIFREEHWPKGIAVNGFGTLEGQKMSKSKGNVL------------------- 659
Query: 731 EGNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLDIQRVVGYRQWC 790
+F + I E G D +R ++S + + V R+
Sbjct: 660 ------------------NFIDAIEENGADVVRLYIMSLAEHDSDFDWRRKEVGKLRKQI 701
Query: 791 NKLWNAVRFSMSKLGEGFVPPLKLHPHNLPFSCKWILSVLNKAISRTASSLNSYEFSDAA 850
+ + + +G V L +W+L LNKAI T ++L +
Sbjct: 702 ERFYELISQFAEYEVKGNV--------ELKDIDRWMLHRLNKAIKETTNALEEFR----T 749
Query: 851 STVYSWWQYQFCDVFIEAIKPYFAGDNPAFASERSAAQHVLWVCLETGLRLLHPFMPFVT 910
T W Y + ++ D+ A ++VL + +RL+ PF P +
Sbjct: 750 RTAVQWAFYSIMNDLRWYLRRTEGRDD-------EAKRYVLRTLADVWVRLMAPFTPHIC 802
Query: 911 EELWQRL 917
EELW++L
Sbjct: 803 EELWEKL 809
>pdb|2V0C|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Sulphamoyl Analogue Of Leucyl-Adenylate In The
Synthetic Site And An Adduct Of Amp With 5-Fluoro-1,3-
Dihydro-1-Hydroxy-2,1-Benzoxaborole (An2690) In The
Editing Site
Length = 878
Score = 102 bits (255), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 106/449 (23%), Positives = 174/449 (38%), Gaps = 108/449 (24%)
Query: 145 KEYNPSSVEKSWYSWWENSGYFIADN---KSSKPSFVIVLPPPNVTGALHIGHALTTAIQ 201
++YNP ++E W +WE G+ A + K +++ P P +G LH+GH +
Sbjct: 2 EKYNPHAIEAKWQRFWEEKGFMKAKDLPGGRGKQYVLVMFPYP--SGDLHMGHLKNYTMG 59
Query: 202 DTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWKWKD 261
D + R+RRM GY L G D G+ + K + + T +I + +
Sbjct: 60 DVLARFRRMQGYEVLHPMGWDAFGLPAENAALKFGVHPKDWTYANIRQAK---------- 109
Query: 262 EYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDLRLVNWDCVL 321
R +G DW RE T + + + F++++++GL YR LVNW
Sbjct: 110 -------ESLRLMGILYDWDREVTTCEPEYYRWNQWIFLKMWEKGLAYRAKGLVNWCPKC 162
Query: 322 RTAISDIEV------DYVDIP--KREMR--------------------NVPGYEKQVEFG 353
+T +++ +V + D P KRE+ N P K ++
Sbjct: 163 QTVLANEQVVEGRCWRHEDTPVEKRELEQWYLRITAYAERLLKDLEGLNWPEKVKAMQRA 222
Query: 354 VL-----TSFAYPLEGGLGEIVVATTRVETMLGDTAIAIHPEDARYSHLH---------- 398
+ +P+EG I V TTR +T+ G T + + PE L
Sbjct: 223 WIGRSEGAEILFPVEGKEVRIPVFTTRPDTLFGATFLVLAPEHPLTLELAAPEKREEVLA 282
Query: 399 -------------------------GKFAIHPFNGRKIPI-ICDAILVDPKFGTGAVKIT 432
G +A++P G +IPI D +L +GTGA+
Sbjct: 283 YVEAAKRKTEIERQAEGREKTGVFLGAYALNPATGERIPIWTADYVLFG--YGTGAIMAV 340
Query: 433 PAHDPNDFDVGKRHNLEFINIFTDDGK--------------INSNGGLEFEGMPRFKARE 478
PAHD D++ ++ L + G+ I N G F+G + +
Sbjct: 341 PAHDQRDYEFARKFGLPIKKVIERPGEPLPEPLERAYEEPGIMVNSG-PFDGTESEEGKR 399
Query: 479 AVNEALKKKGLYRGAKDNEMRLGLCSRSN 507
V L++KGL +G +R L SR
Sbjct: 400 KVIAWLEEKGLGKGRVTYRLRDWLISRQR 428
>pdb|1OBH|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Pre-Transfer Editing Substrate Analogue In Both
Synthetic Active Site And Editing Site
pdb|2BTE|A Chain A, Thermus Thermophilus Leucyl-Trna Synthetase Complexed With
With A Trnaleu Transcript In The Post-Editing
Conformation And A Post-Transfer Editing Substrate
Analogue
pdb|2BTE|D Chain D, Thermus Thermophilus Leucyl-Trna Synthetase Complexed With
With A Trnaleu Transcript In The Post-Editing
Conformation And A Post-Transfer Editing Substrate
Analogue
pdb|2BYT|A Chain A, Thermus Thermophilus Leucyl-Trna Synthetase Complexed With
A Trnaleu Transcript In The Post-Editing Conformation
pdb|2BYT|D Chain D, Thermus Thermophilus Leucyl-Trna Synthetase Complexed With
A Trnaleu Transcript In The Post-Editing Conformation
pdb|1H3N|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Sulphamoyl Analogue Of Leucyl-Adenylate
pdb|1OBC|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Post-Transfer Editing Substrate Analogue
pdb|2V0G|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Trna(Leu) Transcript With 5-Fluoro-1,3-Dihydro-1-
Hydroxy-2,1-Benzoxaborole (An2690) Forming An Adduct To
The Ribose Of Adenosine-76 In The Enzyme Editing Site.
pdb|2V0G|D Chain D, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Trna(Leu) Transcript With 5-Fluoro-1,3-Dihydro-1-
Hydroxy-2,1-Benzoxaborole (An2690) Forming An Adduct To
The Ribose Of Adenosine-76 In The Enzyme Editing Site
Length = 878
Score = 102 bits (254), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 106/449 (23%), Positives = 174/449 (38%), Gaps = 108/449 (24%)
Query: 145 KEYNPSSVEKSWYSWWENSGYFIADN---KSSKPSFVIVLPPPNVTGALHIGHALTTAIQ 201
++YNP ++E W +WE G+ A + K +++ P P +G LH+GH +
Sbjct: 2 EKYNPHAIEAKWQRFWEEKGFMKAKDLPGGRGKQYVLVMFPYP--SGDLHMGHLKNYTMG 59
Query: 202 DTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWKWKD 261
D + R+RRM GY L G D G+ + K + + T +I + +
Sbjct: 60 DVLARFRRMQGYEVLHPMGWDAFGLPAENAALKFGVHPKDWTYANIRQAK---------- 109
Query: 262 EYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDLRLVNWDCVL 321
R +G DW RE T + + + F++++++GL YR LVNW
Sbjct: 110 -------ESLRLMGILYDWDREVTTCEPEYYRWNQWIFLKMWEKGLAYRAKGLVNWCPKC 162
Query: 322 RTAISDIEV------DYVDIP--KREMR--------------------NVPGYEKQVEFG 353
+T +++ +V + D P KRE+ N P K ++
Sbjct: 163 QTVLANEQVVEGRCWRHEDTPVEKRELEQWYLRITAYAERLLKDLEGLNWPEKVKAMQRA 222
Query: 354 VL-----TSFAYPLEGGLGEIVVATTRVETMLGDTAIAIHPEDARYSHLH---------- 398
+ +P+EG I V TTR +T+ G T + + PE L
Sbjct: 223 WIGRSEGAEILFPVEGKEVRIPVFTTRPDTLFGATFLVLAPEHPLTLELAAPEKREEVLA 282
Query: 399 -------------------------GKFAIHPFNGRKIPI-ICDAILVDPKFGTGAVKIT 432
G +A++P G +IPI D +L +GTGA+
Sbjct: 283 YVEAAKRKTEIERQAEGREKTGVFLGAYALNPATGERIPIWTADYVLFG--YGTGAIMAV 340
Query: 433 PAHDPNDFDVGKRHNLEFINIFTDDGK--------------INSNGGLEFEGMPRFKARE 478
PAHD D++ ++ L + G+ I N G F+G + +
Sbjct: 341 PAHDQRDYEFARKFGLPIKKVIERPGEPLPEPLERAYEEPGIMVNSG-PFDGTESEEGKR 399
Query: 479 AVNEALKKKGLYRGAKDNEMRLGLCSRSN 507
V L++KGL +G +R L SR
Sbjct: 400 KVIAWLEEKGLGKGRVTYRLRDWLISRQR 428
>pdb|4AQ7|A Chain A, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
Trna(Leu) And Leucyl-Adenylate Analogue In The
Aminoacylation Conformation
pdb|4AQ7|D Chain D, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
Trna(Leu) And Leucyl-Adenylate Analogue In The
Aminoacylation Conformation
pdb|4ARC|A Chain A, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
Trna(Leu) And Leucine In The Editing Conformation
pdb|4ARI|A Chain A, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
Trna(Leu) And The Benzoxaborole An2679 In The Editing
Conformation
pdb|4AS1|A Chain A, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
Trna(Leu) And The Benzoxaborole An2679 In The Editing
Conformation
pdb|3ZGZ|A Chain A, Ternary Complex Of E. Coli Leucyl-trna Synthetase,
Trna(leu) And Toxic Moiety From Agrocin 84 (tm84) In
Aminoacylation- Like Conformation
pdb|3ZGZ|D Chain D, Ternary Complex Of E. Coli Leucyl-trna Synthetase,
Trna(leu) And Toxic Moiety From Agrocin 84 (tm84) In
Aminoacylation- Like Conformation
Length = 880
Score = 90.1 bits (222), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 117/515 (22%), Positives = 179/515 (34%), Gaps = 148/515 (28%)
Query: 142 QMAKEYNPSSVEKSWYSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQ 201
M ++Y P +E W+ F SK + + P +G LH+GH I
Sbjct: 20 HMQEQYRPEEIESKVQLHWDEKRTFEVTEDESKEKYYCLSMLPYPSGRLHMGHVRNYTIG 79
Query: 202 DTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWKWKD 261
D I R++RM G N L G D G+ + K T +I
Sbjct: 80 DVIARYQRMLGKNVLQPIGWDAFGLPAEGAAVKNNTAPAPWTYDNIAY------------ 127
Query: 262 EYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDLRLVNWDCVL 321
+ Q + LG DWSRE T + + + F LYK+GL+Y+ VNW
Sbjct: 128 -----MKNQLKMLGFGYDWSRELATCTPEYYRWEQKFFTELYKKGLVYKKTSAVNWCPND 182
Query: 322 RTAIS------------DIEVDYVDIP---------------------------KREMRN 342
+T ++ D +V+ +IP K RN
Sbjct: 183 QTVLANEQVIDGCCWRCDTKVERKEIPQWFIKITAYADELLNDLDKLDHWPDTVKTMQRN 242
Query: 343 VPGYEKQVEFGVLTSFAYPLEGGLGEIVVATTRVETMLGDTAIAI---HP---------- 389
G + VE + + + V TTR +T +G T +A+ HP
Sbjct: 243 WIGRSEGVE------ITFNVNDYDNTLTVYTTRPDTFMGCTYLAVAAGHPLAQKAAENNP 296
Query: 390 ------EDARYSHLH--------------GKFAIHPFNGRKIPIICDAILVDPKFGTGAV 429
++ R + + G A+HP G +IP+ A V ++GTGAV
Sbjct: 297 ELAAFIDECRNTKVAEAEMATMEKKGVDTGFKAVHPLTGEEIPVWA-ANFVLMEYGTGAV 355
Query: 430 KITPAHDPNDFDVGKRHNLEFIN-IFTDDGKINSNGGLEFEGMPRFKAREAVNEALKKKG 488
P HD D++ ++ L I DG + +AL +KG
Sbjct: 356 MAVPGHDQRDYEFASKYGLNIKPVILAADG----------------SEPDLSQQALTEKG 399
Query: 489 LYRGAKDNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKLELIPRQY 548
+ + + N + EA + + D + + R+
Sbjct: 400 VLFNSGE--------------------------FNGLDHEAAFNAIADKLTAMGVGERKV 433
Query: 549 TAEWRRWLEAIRDWCVSRQLWWGHQIPAWYVTLED 583
+RDW VSRQ +WG IP VTLED
Sbjct: 434 NYR-------LRDWGVSRQRYWGAPIP--MVTLED 459
>pdb|3ZIU|A Chain A, Crystal Structure Of Mycoplasma Mobile Leucyl-trna
Synthetase With Leu-ams In The Active Site
pdb|3ZIU|B Chain B, Crystal Structure Of Mycoplasma Mobile Leucyl-trna
Synthetase With Leu-ams In The Active Site
Length = 637
Score = 66.2 bits (160), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 59/218 (27%), Positives = 92/218 (42%), Gaps = 23/218 (10%)
Query: 147 YNPSSVEKSWYSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIR 206
YN + +EK W + WE + F NKS + + + P LH+GH D I R
Sbjct: 9 YNHNEIEKKWQTRWEKTKAFKTTNKSKDKFYALDMFPYPSGSGLHVGHPEGYTATDIISR 68
Query: 207 WRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWKWKDEYGGT 266
++R+ G++ L G D G+ + + T +I E F
Sbjct: 69 YKRLKGFDVLHPIGWDAFGLPAEQYALSSGKHPQPFTLKNI--ENF-------------- 112
Query: 267 ILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDLRLVNWDCVLRTAIS 326
RQ + LG S D+ +E T D + F ++YK+GL VNW L T ++
Sbjct: 113 -RRQLKSLGFSFDYEKEVNTTDPSYYRWTQWIFKQIYKKGLAEIREVDVNWCPGLGTVLA 171
Query: 327 DIEVDYVDIPKREM----RNVPGYEKQVEFGVLTSFAY 360
+ E+ V+ K EM + P Y+K ++ VL Y
Sbjct: 172 NEEI--VENDKGEMVSERGSFPVYKKPMKQWVLKITNY 207
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 84/193 (43%), Gaps = 30/193 (15%)
Query: 559 IRDWCVSRQLWWGHQIPAWYVTLED----DELKELGSYNDHWIVARDEKEALAVANK--- 611
++DW +RQ +WG P ++ + DEL EL + I+ E N
Sbjct: 245 LQDWIFARQRYWGEPFPVYFDEDNNVYLIDELVELPHMEN--IMPSGTGEGPLATNTEWV 302
Query: 612 --KFSGKKFEMCQDPDVLDTWFSSGLFPLSVLGWPDD-----TDDLKAF------YPTSV 658
K + K F+ +D + + W S + L+ + +D D KA+ P +
Sbjct: 303 QYKKNNKIFK--RDTNTMPQWAGSCWYYLAYIMKQEDGTYLPIDSKKAYEAFSKWLPVDL 360
Query: 659 LETG--HDILFFWVARM---VMLGIKL-GGEVPFTKVYLHPMIRDAHGRKMSKSLGNVID 712
G H +L AR ++ +K+ + PF K+ MI G+KMSKSLGNV++
Sbjct: 361 YIGGQEHAVLHLLYARFWHKILYDLKIVPTKEPFQKLINQGMILGKDGQKMSKSLGNVVN 420
Query: 713 PLEVINGISLEGL 725
P E+I + L
Sbjct: 421 PDEIIQNFGADTL 433
>pdb|4DLP|A Chain A, Crystal Structure Of Methionyl-Trna Synthetase Metrs From
Brucella Melitensis Bound To Selenomethionine
pdb|4DLP|B Chain B, Crystal Structure Of Methionyl-Trna Synthetase Metrs From
Brucella Melitensis Bound To Selenomethionine
pdb|4DLP|C Chain C, Crystal Structure Of Methionyl-Trna Synthetase Metrs From
Brucella Melitensis Bound To Selenomethionine
Length = 536
Score = 60.8 bits (146), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 77/308 (25%), Positives = 125/308 (40%), Gaps = 68/308 (22%)
Query: 626 VLDTWFSSGLFPLSVLGWPDDTDDLKAFYPTSVLETGHDI----LFFWVARMVMLGIKLG 681
V+ W + ++ LG+PD TD+ A++P + G DI +W A + +
Sbjct: 247 VMYVWVDALTNYITALGYPDTTDERWAYWPANAHIIGKDISRFHAVYWPAFL------MS 300
Query: 682 GEVPFTK-VYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLEGLHKRLEEGNLDPKELE 740
++P K V+ H + + G KMSKS+GNVIDP E++ L+ L L +E+
Sbjct: 301 AQLPLPKRVFAHGFLFN-RGEKMSKSVGNVIDPFELVERYGLDQLRYFLM------REVP 353
Query: 741 VAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLDIQRVVGYRQWCNKLWNAVRFS 800
+ G S+ A ++ N D+ N L N + S
Sbjct: 354 FGQDGS--------------------YSHEAIVNRTNADL---------ANDLGNLAQRS 384
Query: 801 MSKLG---EGFVPPLKLHPHNLPFSCKWILSVLNKAISRTASSLNSYEFSDAASTVYSWW 857
+S + EG VP P + K IL + A+ +++ A +++
Sbjct: 385 LSMIAKNCEGKVP----QPGAFSEADKAILDQADAALETARKAMDDQALHLALGAIFA-- 438
Query: 858 QYQFCDVFIEAIKPYFAGDNPAFASERSAAQH--VLWVCLETGLR---LLHPFMPFVTEE 912
V EA + YFAG P + A+ VL+V E R ++ PF+P E+
Sbjct: 439 ------VVAEANR-YFAGQEPWALRKTDPARMGTVLYVTAEVLRRVGIMVQPFIPQSAEK 491
Query: 913 LWQRLPQP 920
L L P
Sbjct: 492 LLDILAVP 499
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 37/84 (44%)
Query: 173 SKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVV 232
S+ + I G HIGHA D + R++R++G + ++ G D GI
Sbjct: 23 SREKYYITTAIAYPNGKPHIGHAYELIATDAMARFQRLNGMDVYFLTGTDEHGIKMLQSA 82
Query: 233 EKKLMRERKLTRHDIGREQFVSEV 256
K+ + R L + + ++EV
Sbjct: 83 RKEGITPRDLADRNTSAFRRMAEV 106
>pdb|2CSX|A Chain A, Crystal Structure Of Aquifex Aeolicus Methionyl-Trna
Synthetase Complexed With Trna(Met)
pdb|2CSX|B Chain B, Crystal Structure Of Aquifex Aeolicus Methionyl-Trna
Synthetase Complexed With Trna(Met)
pdb|2CT8|A Chain A, Crystal Structure Of Aquifex Aeolicus Methionyl-Trna
Synthetase Complexed With Trna(Met) And
Methionyl-Adenylate Anologue
pdb|2CT8|B Chain B, Crystal Structure Of Aquifex Aeolicus Methionyl-Trna
Synthetase Complexed With Trna(Met) And
Methionyl-Adenylate Anologue
Length = 497
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 61/145 (42%), Gaps = 20/145 (13%)
Query: 176 SFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKK 235
F + P V H+GHA TT DTI R+ R+ Y+ ++ G D G+ Q E+
Sbjct: 6 KFYVTTPIYYVNDVPHLGHAYTTIAADTIARYYRLRDYDVFFLTGTDEHGLKIQKKAEEL 65
Query: 236 LMRERKLTRHDIGREQFVSEVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAV 295
+ ++L D E+F ++W++ +++++ T D K V
Sbjct: 66 GISPKELV--DRNAERF-KKLWEF----------------LKIEYTKFIRTTDPYHVKFV 106
Query: 296 TEAFVRLYKEGLIYRDLRLVNWDCV 320
+ F YK G IY W CV
Sbjct: 107 QKVFEECYKRGDIYLG-EYEGWYCV 130
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 51/102 (50%), Gaps = 8/102 (7%)
Query: 623 DPD-VLDTWFSSGLFPLSVLGWPDDTDDLKAFYPTSVLETGHDILFFWVARMVMLGIKLG 681
DP+ + WF + +S L D ++ ++P + G DIL F + LG
Sbjct: 222 DPEHTIYVWFDALFNYISAL-----EDKVEIYWPADLHLVGKDILRFHTVYWPAFLMSLG 276
Query: 682 GEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLE 723
E+P KV+ H G+KMSK+LGNV+DP EV+ L+
Sbjct: 277 YELP-KKVFAHGWW-TVEGKKMSKTLGNVVDPYEVVQEYGLD 316
>pdb|3O0A|A Chain A, Crystal Structure Of The Wild Type Cp1 Hydrolitic Domain
From Aquifex Aeolicus Leucyl-Trna
pdb|3O0A|B Chain B, Crystal Structure Of The Wild Type Cp1 Hydrolitic Domain
From Aquifex Aeolicus Leucyl-Trna
Length = 219
Score = 49.7 bits (117), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 60/125 (48%), Gaps = 20/125 (16%)
Query: 390 EDARYSHLHGKFAIHPFNGRKIPIICDAILVDPKFGTGAVKITPAHDPNDFDVGKRHNLE 449
E+ + G +A +P NG KIP+ A V ++GTGA+ PAHD D++ K+++L
Sbjct: 101 EEDKEGVFLGVYATNPANGEKIPV-WSANYVLYEYGTGAIMCVPAHDQRDWEFAKKYDLP 159
Query: 450 FINIFTDDGK--------------INSNGGLEFEGMPRFKAREAVNEALKKKGLYRGAKD 495
+ +G +NS+G F+G+ A+ + E L+ +GL G K
Sbjct: 160 IKVVVKPEGAWDFEKGAYEGKGTLVNSDG---FDGLDSETAKRKITEWLQDRGL--GEKK 214
Query: 496 NEMRL 500
RL
Sbjct: 215 VSYRL 219
>pdb|3PZ5|A Chain A, The Crystal Structure Of Aaleurs-Cp1-D20
pdb|3PZ5|B Chain B, The Crystal Structure Of Aaleurs-Cp1-D20
Length = 201
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 56/114 (49%), Gaps = 18/114 (15%)
Query: 390 EDARYSHLHGKFAIHPFNGRKIPIICDAILVDPKFGTGAVKITPAHDPNDFDVGKRHNLE 449
E+ + G +A +P NG KIP+ A V ++GTGA+ PAHD D++ K+++L
Sbjct: 87 EEDKEGVFLGVYATNPANGEKIPV-WSANYVLYEYGTGAIMCVPAHDQRDWEFAKKYDLP 145
Query: 450 FINIFTDDGK--------------INSNGGLEFEGMPRFKAREAVNEALKKKGL 489
+ +G +NS+G F+G+ A+ + E L+ +GL
Sbjct: 146 IKVVVKPEGAWDFEKGAYEGKGTLVNSDG---FDGLDSETAKRKITEWLQDRGL 196
>pdb|3PZ0|A Chain A, The Crystal Structure Of Aaleurs-Cp1
pdb|3PZ0|B Chain B, The Crystal Structure Of Aaleurs-Cp1
pdb|3PZ0|C Chain C, The Crystal Structure Of Aaleurs-Cp1
pdb|3PZ0|D Chain D, The Crystal Structure Of Aaleurs-Cp1
Length = 221
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 56/114 (49%), Gaps = 18/114 (15%)
Query: 390 EDARYSHLHGKFAIHPFNGRKIPIICDAILVDPKFGTGAVKITPAHDPNDFDVGKRHNLE 449
E+ + G +A +P NG KIP+ A V ++GTGA+ PAHD D++ K+++L
Sbjct: 107 EEDKEGVFLGVYATNPANGEKIPV-WSANYVLYEYGTGAIMCVPAHDQRDWEFAKKYDLP 165
Query: 450 FINIFTDDGK--------------INSNGGLEFEGMPRFKAREAVNEALKKKGL 489
+ +G +NS+G F+G+ A+ + E L+ +GL
Sbjct: 166 IKVVVKPEGAWDFEKGAYEGKGTLVNSDG---FDGLDSETAKRKITEWLQDRGL 216
>pdb|2X1L|A Chain A, Crystal Structure Of Mycobacterium Smegmatis
Methionyl-Trna Synthetase In Complex With Methionine And
Adenosine
pdb|2X1L|B Chain B, Crystal Structure Of Mycobacterium Smegmatis
Methionyl-Trna Synthetase In Complex With Methionine And
Adenosine
pdb|2X1L|C Chain C, Crystal Structure Of Mycobacterium Smegmatis
Methionyl-Trna Synthetase In Complex With Methionine And
Adenosine
pdb|2X1M|A Chain A, Crystal Structure Of Mycobacterium Smegmatis
Methionyl-Trna Synthetase In Complex With Methionine
Length = 524
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 58/106 (54%), Gaps = 12/106 (11%)
Query: 624 PD-VLDTWFSSGLFPLSVLGWPD-DTDDLKAFYPTSVLETGHDILFF----WVARMVMLG 677
PD V+ W + L+ +G+PD +++ + ++P + G DI+ F W A ++ G
Sbjct: 232 PDHVMYVWVDALTNYLTGVGFPDTESESFRRYWPADLHMIGKDIIRFHTVYWPAFLMSAG 291
Query: 678 IKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLE 723
+ L +++ H + + G KMSKS+GNV+DP+ +++ L+
Sbjct: 292 LPLP-----KRIFAHGWLLN-RGEKMSKSIGNVVDPVNLVDTFGLD 331
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 59/140 (42%), Gaps = 22/140 (15%)
Query: 173 SKPSFVIV-LPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVV 231
S+P ++ + PN G HIGHA D I R++R+ GY+ ++ G D G
Sbjct: 11 SEPFYITTAIAYPN--GVPHIGHAYEYIATDAIARFKRLDGYDVRYLTGTDVHGQKMAET 68
Query: 232 VEKKLMRERKLTRHDIGREQFVSEVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKR 291
K+ + +L R + S+V++ R Q +L S D R T D
Sbjct: 69 AAKEGIPAAELARRN-------SDVFQ----------RLQEKLNISFD--RFIRTSDADH 109
Query: 292 SKAVTEAFVRLYKEGLIYRD 311
+A + R+ G IY D
Sbjct: 110 YEASKAIWKRMADAGDIYLD 129
>pdb|2D54|A Chain A, Crystal Structure Of Methionyl Trna Synthetase Y225a
Mutant From Thermus Thermophilus
Length = 502
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 49/108 (45%), Gaps = 10/108 (9%)
Query: 626 VLDTWFSSGLFPLSVLGWPDDTDDLKAFYPTSVLETGHDIL----FFWVARMVMLGIKLG 681
V WF + L +S L +P+ + + F+P + G DIL FW + GI +
Sbjct: 223 VTAVWFDALLNYVSALDYPEG-EAYRTFWPHAWHLIGKDILKPHAVFWPTMLKAAGIPMY 281
Query: 682 GEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLEGLHKRL 729
+ L P GRKMSK+LGNV+DP ++ + L L
Sbjct: 282 RHLNVGGFLLGP-----DGRKMSKTLGNVVDPFALLEKYGRDALRYYL 324
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 25/49 (51%)
Query: 177 FVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAG 225
F + P V H+GHA TT + D + RW R+ GY ++ G D G
Sbjct: 5 FYVTTPIYYVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHG 53
>pdb|1WOY|A Chain A, Crystal Structure Of Methionyl Trna Synthetase Y225f
Mutant From Thermus Thermophilus
pdb|2D5B|A Chain A, Crystal Structure Of Thermus Thermophilus Methionyl Trna
Synthetase Y225f Mutant Obtained In The Presence Of
Peg6000
Length = 500
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 25/49 (51%)
Query: 177 FVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAG 225
F + P V H+GHA TT + D + RW R+ GY ++ G D G
Sbjct: 5 FYVTTPIYYVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHG 53
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 48/105 (45%), Gaps = 10/105 (9%)
Query: 629 TWFSSGLFPLSVLGWPDDTDDLKAFYPTSVLETGHDIL----FFWVARMVMLGIKLGGEV 684
WF + L +S L +P+ + + F+P + G DIL FW + GI + +
Sbjct: 226 VWFDALLNYVSALDYPEG-EAYRTFWPHAWHLIGKDILKPHAVFWPTMLKAAGIPMYRHL 284
Query: 685 PFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLEGLHKRL 729
L P GRKMSK+LGNV+DP ++ + L L
Sbjct: 285 NVGGFLLGP-----DGRKMSKTLGNVVDPFALLEKYGRDALRYYL 324
>pdb|1A8H|A Chain A, Methionyl-Trna Synthetase From Thermus Thermophilus
Length = 500
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 25/49 (51%)
Query: 177 FVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAG 225
F + P V H+GHA TT + D + RW R+ GY ++ G D G
Sbjct: 5 FYVTTPIYYVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHG 53
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 49/108 (45%), Gaps = 10/108 (9%)
Query: 626 VLDTWFSSGLFPLSVLGWPDDTDDLKAFYPTSVLETGHDIL----FFWVARMVMLGIKLG 681
V WF + L +S L +P+ + + F+P + G DIL FW + GI +
Sbjct: 223 VTYVWFDALLNYVSALDYPEG-EAYRTFWPHAWHLIGKDILKPHAVFWPTMLKAAGIPMY 281
Query: 682 GEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLEGLHKRL 729
+ L P GRKMSK+LGNV+DP ++ + L L
Sbjct: 282 RHLNVGGFLLGP-----DGRKMSKTLGNVVDPFALLEKYGRDALRYYL 324
>pdb|2AJG|A Chain A, Crystal Structure Of The Editing Domain Of E. Coli Leucyl-
Trna Synthetase
pdb|2AJG|B Chain B, Crystal Structure Of The Editing Domain Of E. Coli Leucyl-
Trna Synthetase
pdb|2AJH|A Chain A, Crystal Structure Of The Editing Domain Of E. Coli Leucyl-
Trna Synthetase Complexes With Methionine
pdb|2AJH|B Chain B, Crystal Structure Of The Editing Domain Of E. Coli Leucyl-
Trna Synthetase Complexes With Methionine
pdb|2AJI|A Chain A, Crystal Structure Of The Editing Domain Of E. Coli Leucyl-
Trna Synthetase Complexes With Isoleucine
pdb|2AJI|B Chain B, Crystal Structure Of The Editing Domain Of E. Coli Leucyl-
Trna Synthetase Complexes With Isoleucine
Length = 196
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 28/103 (27%), Positives = 46/103 (44%), Gaps = 18/103 (17%)
Query: 402 AIHPFNGRKIPIICDAILVDPKFGTGAVKITPAHDPNDFDVGKRHNLEFINI-------- 453
A+HP G +IP+ A V ++GTGAV P HD D++ ++ L +
Sbjct: 92 AVHPLTGEEIPVWA-ANFVLMEYGTGAVMAVPGHDQRDYEFASKYGLNIKPVILAADGSE 150
Query: 454 -------FTDDGKINSNGGLEFEGMPRFKAREAVNEALKKKGL 489
T+ G + ++G EF G+ A A+ + L G+
Sbjct: 151 PDLSQQALTEKGVLFNSG--EFNGLDHEAAFNAIADKLTAMGV 191
>pdb|4EG5|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1312
pdb|4EG5|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1312
Length = 542
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 59/135 (43%), Gaps = 23/135 (17%)
Query: 177 FVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 236
F + P V A HIGH +T I D I R+ R+ G + G D G Q V E
Sbjct: 11 FFVTSPIYYVNAAPHIGHVYSTLITDVIGRYHRVKGERVFALTGTDEHG---QKVAEA-- 65
Query: 237 MRERKLTRHDIGREQFVSEVWKWKDEYGGTILRQQRRLGASLDWSRECF--TMDEKRSKA 294
++++++ +D + + + ++ +D+S + F T +E+
Sbjct: 66 AKQKQVSPYD----------------FTTAVAGEFKKCFEQMDYSIDYFIRTTNEQHKAV 109
Query: 295 VTEAFVRLYKEGLIY 309
V E + +L ++G IY
Sbjct: 110 VKELWTKLEQKGDIY 124
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 52/122 (42%), Gaps = 30/122 (24%)
Query: 645 DDTDDLKAFYPTSVLETGHDIL----FFWVARMVMLGIKLGGEVPFTKVYLHPMIRDAHG 700
DD ++L+ F P V G DIL +W A ++ G+ L P AHG
Sbjct: 269 DDFNELERF-PADVHVIGKDILKFHAIYWPAFLLSAGLPL------------PKKIVAHG 315
Query: 701 ------RKMSKSLGNVIDPLEVINGISLEGLHKRL-------EEGNLDPKELEVAKKGQK 747
+K+SKSLGNV DP+E + L L ++G+ K + G+
Sbjct: 316 WWTKDRKKISKSLGNVFDPVEKAEEFGYDALKYFLLRESGFSDDGDYSDKNMIARLNGEL 375
Query: 748 AD 749
AD
Sbjct: 376 AD 377
>pdb|3TUN|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1356
pdb|3TUN|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1356
pdb|4EG4|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1289
pdb|4EG4|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1289
pdb|4EG7|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1331
pdb|4EG7|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1331
pdb|4EGA|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1320
pdb|4EGA|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1320
pdb|3U1Z|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1433
pdb|3U1Z|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1433
Length = 542
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 59/135 (43%), Gaps = 23/135 (17%)
Query: 177 FVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 236
F + P V A HIGH +T I D I R+ R+ G + G D G Q V E
Sbjct: 11 FFVTSPIYYVNAAPHIGHVYSTLITDVIGRYHRVKGERVFALTGTDEHG---QKVAEA-- 65
Query: 237 MRERKLTRHDIGREQFVSEVWKWKDEYGGTILRQQRRLGASLDWSRECF--TMDEKRSKA 294
++++++ +D + + + ++ +D+S + F T +E+
Sbjct: 66 AKQKQVSPYD----------------FTTAVAGEFKKXFEQMDYSIDYFIRTTNEQHKAV 109
Query: 295 VTEAFVRLYKEGLIY 309
V E + +L ++G IY
Sbjct: 110 VKELWTKLEQKGDIY 124
Score = 35.8 bits (81), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 52/122 (42%), Gaps = 30/122 (24%)
Query: 645 DDTDDLKAFYPTSVLETGHDIL----FFWVARMVMLGIKLGGEVPFTKVYLHPMIRDAHG 700
DD ++L+ F P V G DIL +W A ++ G+ L P AHG
Sbjct: 269 DDFNELERF-PADVHVIGKDILKFHAIYWPAFLLSAGLPL------------PKKIVAHG 315
Query: 701 ------RKMSKSLGNVIDPLEVINGISLEGLHKRL-------EEGNLDPKELEVAKKGQK 747
+K+SKSLGNV DP+E + L L ++G+ K + G+
Sbjct: 316 WWTKDRKKISKSLGNVFDPVEKAEEFGYDALKYFLLRESGFSDDGDYSDKNMIARLNGEL 375
Query: 748 AD 749
AD
Sbjct: 376 AD 377
>pdb|4EG1|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Substrate Methionine
pdb|4EG1|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Substrate Methionine
pdb|4EG3|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Product Methionyl-Adenylate
pdb|4EG3|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Product Methionyl-Adenylate
pdb|4EG6|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1325
pdb|4EG6|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1325
pdb|4EG8|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Compound Chem 89
pdb|4EG8|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Compound Chem 89
pdb|3U1E|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1387
pdb|3U1E|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1387
pdb|3U1F|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1392
pdb|3U1F|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1392
pdb|3U1G|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1415
pdb|3U1G|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1415
pdb|3U20|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1444
pdb|3U20|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1444
Length = 542
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 59/135 (43%), Gaps = 23/135 (17%)
Query: 177 FVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 236
F + P V A HIGH +T I D I R+ R+ G + G D G Q V E
Sbjct: 11 FFVTSPIYYVNAAPHIGHVYSTLITDVIGRYHRVKGERVFALTGTDEHG---QKVAEA-- 65
Query: 237 MRERKLTRHDIGREQFVSEVWKWKDEYGGTILRQQRRLGASLDWSRECF--TMDEKRSKA 294
++++++ +D + + + ++ +D+S + F T +E+
Sbjct: 66 AKQKQVSPYD----------------FTTAVAGEFKKCFEQMDYSIDYFIRTTNEQHKAV 109
Query: 295 VTEAFVRLYKEGLIY 309
V E + +L ++G IY
Sbjct: 110 VKELWTKLEQKGDIY 124
Score = 35.8 bits (81), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 52/122 (42%), Gaps = 30/122 (24%)
Query: 645 DDTDDLKAFYPTSVLETGHDIL----FFWVARMVMLGIKLGGEVPFTKVYLHPMIRDAHG 700
DD ++L+ F P V G DIL +W A ++ G+ L P AHG
Sbjct: 269 DDFNELERF-PADVHVIGKDILKFHAIYWPAFLLSAGLPL------------PKKIVAHG 315
Query: 701 ------RKMSKSLGNVIDPLEVINGISLEGLHKRL-------EEGNLDPKELEVAKKGQK 747
+K+SKSLGNV DP+E + L L ++G+ K + G+
Sbjct: 316 WWTKDRKKISKSLGNVFDPVEKAEEFGYDALKYFLLRESGFSDDGDYSDKNMIARLNGEL 375
Query: 748 AD 749
AD
Sbjct: 376 AD 377
>pdb|3FNR|A Chain A, Crystal Structure Of Putative Arginyl T-Rna Synthetase
From Campylobacter Jejuni
Length = 464
Score = 37.0 bits (84), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 21/40 (52%)
Query: 174 KPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGY 213
+ SF++ N TG LHIGHA DT+ R R GY
Sbjct: 29 QESFLLEYVSANPTGPLHIGHARGAVFGDTLTRLARHLGY 68
>pdb|4FBJ|A Chain A, Structure Of The Cif:nedd8 Complex - Photorhabdus
Luminescens Cycle Inhibiting Factor In Complex With
Human Nedd8
Length = 261
Score = 36.2 bits (82), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 48/112 (42%), Gaps = 18/112 (16%)
Query: 709 NVIDPLEVINGISLEGLHKRLEEGN--LDPKELEVAKKGQKADFPNGIPECGTDALRFAL 766
N DP E ++G+S + + K + EG +DP E+ K +F + + + AL
Sbjct: 67 NPYDPTEPVSGLSAQNIFKLMTEGEHAVDPVEMAQTGKIDGNEFAESVDQLSSAKNYVAL 126
Query: 767 VSYTAQSDKINLDI----QRVVGYRQWCNKLWNAVRFSMSKLGEGFVPPLKL 814
V+ +DI Q VGY S LG+G +PPLK+
Sbjct: 127 VNDRRLGHMFLIDIPSNDQETVGY------------IYQSDLGQGALPPLKI 166
>pdb|3GQJ|A Chain A, Crystal Structure Of Cell Inhibiting Factor (Cif) From
Photorhabdus Luminescens
Length = 261
Score = 35.0 bits (79), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 47/112 (41%), Gaps = 18/112 (16%)
Query: 709 NVIDPLEVINGISLEGLHKRLEEGN--LDPKELEVAKKGQKADFPNGIPECGTDALRFAL 766
N DP E + G+S + + K + EG +DP E+ K +F + + + AL
Sbjct: 67 NPYDPTEPVCGLSAQNIFKLMTEGEHAVDPVEMAQTGKIDGNEFAESVDQLSSAKNYVAL 126
Query: 767 VSYTAQSDKINLDI----QRVVGYRQWCNKLWNAVRFSMSKLGEGFVPPLKL 814
V+ +DI Q VGY S LG+G +PPLK+
Sbjct: 127 VNDRRLGHMFLIDIPSNDQETVGY------------IYQSDLGQGALPPLKI 166
>pdb|3P1T|A Chain A, Crystal Structure Of A Putative Aminotransferase
(Bpsl1724) From Burkholderia Pseudomallei K96243 At 2.60
A Resolution
pdb|3P1T|B Chain B, Crystal Structure Of A Putative Aminotransferase
(Bpsl1724) From Burkholderia Pseudomallei K96243 At 2.60
A Resolution
pdb|3P1T|C Chain C, Crystal Structure Of A Putative Aminotransferase
(Bpsl1724) From Burkholderia Pseudomallei K96243 At 2.60
A Resolution
pdb|3P1T|D Chain D, Crystal Structure Of A Putative Aminotransferase
(Bpsl1724) From Burkholderia Pseudomallei K96243 At 2.60
A Resolution
Length = 337
Score = 34.7 bits (78), Expect = 0.31, Method: Composition-based stats.
Identities = 17/63 (26%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 498 MRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKLELIPRQYTAEWRRWLE 557
+RLG ++++ + QW+ N ++ + AL A +D+D+ + I + A+ RR +
Sbjct: 205 LRLGALFGPSELIAAXKRKQWFCNVGTLDLHALEAALDNDRAREAHIAKTL-AQRRRVAD 263
Query: 558 AIR 560
A+R
Sbjct: 264 ALR 266
>pdb|3H97|A Chain A, Structure Of A Mutant Methionyl-trna Synthetase With
Modified Specificity
pdb|3H99|A Chain A, Structure Of A Mutant Methionyl-Trna Synthetase With
Modified Specificity Complexed With Methionine
pdb|3H9B|A Chain A, Structure Of A Mutant Methionyl-Trna Synthetase With
Modified Specificity Complexed With Azidonorleucine
Length = 560
Score = 33.1 bits (74), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 24/48 (50%)
Query: 178 VIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAG 225
++ P G++H+GH L D +R++RM G+ ++ D G
Sbjct: 21 LVTCASPYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHG 68
>pdb|3TQO|A Chain A, Structure Of The Cysteinyl-Trna Synthetase (Cyss) From
Coxiella Burnetii
Length = 462
Score = 33.1 bits (74), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 28/53 (52%)
Query: 681 GGEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLEGLHKRLEEGN 733
G E PF K++ H + + + K SKSLGN+I E + +E L L G+
Sbjct: 248 GEEKPFVKLWXHAGLLEINKEKXSKSLGNIISIREALKESDVEVLRYFLLSGH 300
>pdb|3KFL|A Chain A, Leishmania Major Methionyl-Trna Synthetase In Complex With
Methionyladenylate And Pyrophosphate
Length = 564
Score = 33.1 bits (74), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 22/49 (44%)
Query: 177 FVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAG 225
F P V + HIGH +T I D + R+ R+ G + G D G
Sbjct: 28 FFATTPIYYVNASPHIGHVYSTLIVDVLGRYHRVKGEEVFVMTGTDEHG 76
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 61/153 (39%), Gaps = 32/153 (20%)
Query: 625 DVLDTWFSSGLFPLSVLGWPDDTDDLKAF--YPTSVLETGHDIL----FFWVARMVMLGI 678
D L +++ L ++ G +D A +P V G DIL +W A +
Sbjct: 262 DALFNYYTGALTRVATDGTETLDEDHHALNRWPADVHVVGKDILKFHAIYWPAFL----- 316
Query: 679 KLGGEVPFTKVYLHPMIRDAHG------RKMSKSLGNVIDPLEVINGISLEGLHKRL--- 729
+ E+P P +HG +K+SKSLGN DP+E ++ L L
Sbjct: 317 -MSAELPL------PERLVSHGWWTKDHKKISKSLGNAFDPVEKAKEFGIDALKYFLMRE 369
Query: 730 ----EEGNLDPKELEVAKKGQKAD-FPNGIPEC 757
++G+ K + G+ AD N + C
Sbjct: 370 SNFQDDGDYSDKNMVARLNGELADTLGNLVSRC 402
>pdb|1P7P|A Chain A, Methionyl-trna Synthetase From Escherichia Coli Complexed
With Methionine Phosphonate
pdb|1PFU|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli Complexed
With Methionine Phosphinate
pdb|1PFV|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli Complexed
With Difluoromethionine
pdb|1PFW|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli Complexed
With Trifluoromethionine
pdb|1PFY|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli Complexed
With Methionyl Sulphamoyl Adenosine
pdb|1PG0|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli Complexed
With Methioninyl Adenylate
pdb|1PG2|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli Complexed
With Methionine And Adenosine
Length = 551
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 24/48 (50%)
Query: 178 VIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAG 225
++ P G++H+GH L D +R++RM G+ ++ D G
Sbjct: 8 LVTCALPYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHG 55
>pdb|1F4L|A Chain A, Crystal Structure Of The E.Coli Methionyl-Trna Synthetase
Complexed With Methionine
Length = 551
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 24/48 (50%)
Query: 178 VIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAG 225
++ P G++H+GH L D +R++RM G+ ++ D G
Sbjct: 9 LVTCALPYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHG 56
>pdb|1QQT|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli
Length = 551
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 24/48 (50%)
Query: 178 VIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAG 225
++ P G++H+GH L D +R++RM G+ ++ D G
Sbjct: 8 LVTCALPYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHG 55
>pdb|3H9C|A Chain A, Structure Of Methionyl-Trna Synthetase: Crystal Form 2
Length = 547
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 24/48 (50%)
Query: 178 VIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAG 225
++ P G++H+GH L D +R++RM G+ ++ D G
Sbjct: 8 LVTCALPYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHG 55
>pdb|3LFM|A Chain A, Crystal Structure Of The Fat Mass And Obesity Associated
(Fto) Protein Reveals Basis For Its Substrate
Specificity
Length = 495
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 282 RECFTMDEKRSKAVTEAFVRLYKEGLIYRDL 312
RE ++ E+ K V EAF+ L+K G ++RDL
Sbjct: 42 REASSVSEELHKEVQEAFLTLHKHGCLFRDL 72
>pdb|1OHF|A Chain A, The Refined Structure Of Nudaurelia Capensis Omega Virus
pdb|1OHF|B Chain B, The Refined Structure Of Nudaurelia Capensis Omega Virus
pdb|1OHF|C Chain C, The Refined Structure Of Nudaurelia Capensis Omega Virus
pdb|1OHF|D Chain D, The Refined Structure Of Nudaurelia Capensis Omega Virus
Length = 644
Score = 31.2 bits (69), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 47/111 (42%), Gaps = 6/111 (5%)
Query: 475 KAREAVNEALK-KKGLYRGAKDNEMRLGL---CSRSNDVVEPMIKPQWYVNCNSMAM--E 528
++ AV E K GL + + D E+R C +D P+ QW ++ S M
Sbjct: 103 ESARAVGEYSKIPDGLVKFSVDAEIREIYNEECPTVSDASIPLDGAQWSLSIISYPMFRT 162
Query: 529 ALYAVMDDDKKKLELIPRQYTAEWRRWLEAIRDWCVSRQLWWGHQIPAWYV 579
A +AV + D K++ L W L + RD S Q + P W+V
Sbjct: 163 AYFAVANVDNKEISLDVTNDLIVWLNNLASWRDVVDSGQWFTFSDDPTWFV 213
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,956,727
Number of Sequences: 62578
Number of extensions: 1245496
Number of successful extensions: 3082
Number of sequences better than 100.0: 38
Number of HSP's better than 100.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 2960
Number of HSP's gapped (non-prelim): 75
length of query: 1022
length of database: 14,973,337
effective HSP length: 109
effective length of query: 913
effective length of database: 8,152,335
effective search space: 7443081855
effective search space used: 7443081855
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)