Query 001708
Match_columns 1022
No_of_seqs 479 out of 2693
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 07:25:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001708.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001708hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0432 Valyl-tRNA synthetase 100.0 3E-249 6E-254 2136.4 74.7 883 122-1021 21-909 (995)
2 PLN02381 valyl-tRNA synthetase 100.0 4E-217 1E-221 2023.6 87.6 972 48-1021 2-976 (1066)
3 COG0525 ValS Valyl-tRNA synthe 100.0 1E-217 2E-222 1926.1 71.9 790 143-1020 1-793 (877)
4 PTZ00419 valyl-tRNA synthetase 100.0 4E-200 9E-205 1879.2 81.8 870 136-1020 17-907 (995)
5 PRK05729 valS valyl-tRNA synth 100.0 7E-188 2E-192 1749.6 74.0 785 142-1021 4-791 (874)
6 PLN02943 aminoacyl-tRNA ligase 100.0 3E-183 7E-188 1708.9 76.7 780 142-1011 56-857 (958)
7 PRK14900 valS valyl-tRNA synth 100.0 1E-182 3E-187 1714.0 77.0 798 140-1021 12-821 (1052)
8 TIGR00422 valS valyl-tRNA synt 100.0 1E-182 3E-187 1703.1 75.5 784 143-1012 1-787 (861)
9 PTZ00427 isoleucine-tRNA ligas 100.0 3E-179 6E-184 1681.4 76.8 811 140-1012 65-1020(1205)
10 PRK06039 ileS isoleucyl-tRNA s 100.0 4E-176 8E-181 1653.7 76.1 785 141-1008 5-857 (975)
11 COG0060 IleS Isoleucyl-tRNA sy 100.0 4E-175 8E-180 1577.7 56.6 758 126-967 7-827 (933)
12 PLN02882 aminoacyl-tRNA ligase 100.0 5E-173 1E-177 1631.7 76.0 789 145-1012 6-894 (1159)
13 PLN02843 isoleucyl-tRNA synthe 100.0 5E-173 1E-177 1616.7 75.4 794 149-1011 5-900 (974)
14 PRK13804 ileS isoleucyl-tRNA s 100.0 9E-173 2E-177 1614.7 76.0 790 125-1011 12-897 (961)
15 PRK05743 ileS isoleucyl-tRNA s 100.0 7E-173 2E-177 1612.7 72.0 786 125-1011 7-857 (912)
16 PRK13208 valS valyl-tRNA synth 100.0 8E-169 2E-173 1567.7 74.6 782 142-1012 5-790 (800)
17 TIGR00392 ileS isoleucyl-tRNA 100.0 2E-164 5E-169 1539.2 68.0 760 143-973 2-839 (861)
18 PLN02959 aminoacyl-tRNA ligase 100.0 5E-148 1E-152 1401.1 66.1 733 143-967 9-920 (1084)
19 TIGR00395 leuS_arch leucyl-tRN 100.0 1E-144 3E-149 1360.6 63.7 732 151-991 2-840 (938)
20 PF00133 tRNA-synt_1: tRNA syn 100.0 6E-146 1E-150 1321.7 38.2 563 155-779 1-601 (601)
21 KOG0433 Isoleucyl-tRNA synthet 100.0 2E-141 4E-146 1211.1 57.0 795 123-1008 18-889 (937)
22 PRK12300 leuS leucyl-tRNA synt 100.0 2E-138 4E-143 1300.7 55.8 701 190-1007 1-806 (897)
23 KOG0434 Isoleucyl-tRNA synthet 100.0 9E-134 2E-138 1134.3 49.7 787 144-1013 5-883 (1070)
24 PRK00390 leuS leucyl-tRNA synt 100.0 5E-134 1E-138 1248.6 49.3 652 143-958 1-753 (805)
25 TIGR00396 leuS_bact leucyl-tRN 100.0 4E-134 1E-138 1250.6 45.6 644 147-940 1-775 (842)
26 PLN02563 aminoacyl-tRNA ligase 100.0 5E-133 1E-137 1242.3 44.8 643 143-941 76-891 (963)
27 COG0495 LeuS Leucyl-tRNA synth 100.0 5E-103 1E-107 942.8 43.8 649 143-944 1-752 (814)
28 KOG0435 Leucyl-tRNA synthetase 100.0 9.4E-96 2E-100 829.1 39.2 648 151-940 34-797 (876)
29 PRK12268 methionyl-tRNA synthe 100.0 1.5E-88 3.3E-93 818.5 39.8 505 175-937 3-521 (556)
30 cd00817 ValRS_core catalytic c 100.0 2.4E-88 5.3E-93 779.1 33.4 380 175-778 1-382 (382)
31 TIGR00398 metG methionyl-tRNA 100.0 5.7E-87 1.2E-91 800.6 43.6 490 177-919 1-503 (530)
32 PRK00133 metG methionyl-tRNA s 100.0 3.8E-83 8.3E-88 783.5 43.5 484 175-919 2-503 (673)
33 PRK12267 methionyl-tRNA synthe 100.0 5E-83 1.1E-87 781.2 42.8 470 174-919 3-478 (648)
34 PLN02610 probable methionyl-tR 100.0 8.6E-81 1.9E-85 765.5 44.7 493 172-919 14-532 (801)
35 PRK11893 methionyl-tRNA synthe 100.0 1.2E-80 2.6E-85 743.6 42.3 464 175-919 1-476 (511)
36 KOG0437 Leucyl-tRNA synthetase 100.0 7.5E-81 1.6E-85 710.2 33.8 698 150-940 15-885 (1080)
37 PLN02224 methionine-tRNA ligas 100.0 3.3E-78 7.1E-83 723.6 42.5 477 162-919 51-546 (616)
38 cd00818 IleRS_core catalytic c 100.0 2.7E-78 5.8E-83 685.3 28.6 338 175-778 1-338 (338)
39 COG0143 MetG Methionyl-tRNA sy 100.0 2.1E-76 4.6E-81 693.5 41.5 488 174-919 4-512 (558)
40 cd00668 Ile_Leu_Val_MetRS_core 100.0 1.1E-67 2.4E-72 593.7 26.7 312 176-778 1-312 (312)
41 KOG0436 Methionyl-tRNA synthet 100.0 7.2E-63 1.6E-67 536.6 32.4 471 174-920 38-528 (578)
42 PF09334 tRNA-synt_1g: tRNA sy 100.0 6.6E-62 1.4E-66 559.7 16.3 375 177-801 1-391 (391)
43 cd00814 MetRS_core catalytic c 100.0 5.7E-60 1.2E-64 532.5 25.1 309 176-778 1-319 (319)
44 cd00812 LeuRS_core catalytic c 100.0 8.9E-56 1.9E-60 497.1 22.2 296 176-780 1-314 (314)
45 KOG1247 Methionyl-tRNA synthet 100.0 2E-43 4.3E-48 384.4 22.7 491 173-919 12-520 (567)
46 PRK00260 cysS cysteinyl-tRNA s 100.0 4.2E-41 9E-46 395.8 30.8 359 166-868 16-376 (463)
47 PTZ00399 cysteinyl-tRNA-synthe 100.0 8.7E-36 1.9E-40 360.5 31.8 379 166-867 53-437 (651)
48 TIGR00435 cysS cysteinyl-tRNA 100.0 7E-36 1.5E-40 351.0 27.2 355 166-857 14-371 (465)
49 PRK12418 cysteinyl-tRNA synthe 100.0 1.4E-34 3E-39 329.0 24.4 343 174-867 9-363 (384)
50 TIGR03447 mycothiol_MshC cyste 100.0 1.8E-34 3.9E-39 329.3 23.4 338 173-857 35-382 (411)
51 PRK14536 cysS cysteinyl-tRNA s 100.0 1.6E-31 3.4E-36 312.1 26.8 355 183-857 30-399 (490)
52 PLN02946 cysteine-tRNA ligase 100.0 7E-31 1.5E-35 309.4 23.0 360 176-867 82-443 (557)
53 PRK14535 cysS cysteinyl-tRNA s 100.0 2.4E-30 5.1E-35 305.9 24.3 334 183-857 255-607 (699)
54 cd00672 CysRS_core catalytic c 100.0 2.9E-30 6.2E-35 274.0 16.4 94 166-279 13-107 (213)
55 PRK01611 argS arginyl-tRNA syn 100.0 3.5E-28 7.7E-33 290.1 30.3 118 173-309 109-226 (507)
56 PRK14534 cysS cysteinyl-tRNA s 100.0 5E-28 1.1E-32 281.4 26.0 355 179-857 24-392 (481)
57 cd07961 Anticodon_Ia_Ile_ABEc 100.0 2.3E-27 5E-32 247.0 19.5 179 778-961 1-183 (183)
58 cd00674 LysRS_core_class_I cat 99.9 6E-27 1.3E-31 264.3 18.6 124 174-309 18-150 (353)
59 cd07960 Anticodon_Ia_Ile_BEm A 99.9 2.9E-25 6.3E-30 230.6 20.6 178 778-960 1-179 (180)
60 COG0215 CysS Cysteinyl-tRNA sy 99.9 1.6E-23 3.5E-28 239.0 20.1 145 657-857 223-368 (464)
61 PF08264 Anticodon_1: Anticodo 99.9 9.2E-23 2E-27 205.5 13.7 147 823-977 1-148 (153)
62 PRK00750 lysK lysyl-tRNA synth 99.9 2.3E-22 5E-27 239.0 18.7 126 174-309 22-156 (510)
63 PF01406 tRNA-synt_1e: tRNA sy 99.9 2.1E-22 4.5E-27 220.0 9.1 123 176-320 10-133 (300)
64 TIGR00456 argS arginyl-tRNA sy 99.9 3E-19 6.5E-24 215.9 33.5 220 662-903 335-559 (566)
65 PF13603 tRNA-synt_1_2: Leucyl 99.9 1E-21 2.2E-26 202.8 10.1 126 357-485 11-185 (185)
66 KOG2007 Cysteinyl-tRNA synthet 99.8 1.5E-18 3.2E-23 195.4 27.3 169 656-870 259-428 (586)
67 TIGR00467 lysS_arch lysyl-tRNA 99.7 6E-17 1.3E-21 191.7 18.8 97 175-280 18-122 (515)
68 COG0018 ArgS Arginyl-tRNA synt 99.7 6.4E-15 1.4E-19 176.2 32.8 215 661-903 341-570 (577)
69 cd07962 Anticodon_Ia_Val Antic 99.7 4.6E-16 1E-20 154.2 15.5 135 778-917 1-135 (135)
70 PRK12451 arginyl-tRNA syntheta 99.7 8.7E-14 1.9E-18 168.2 35.0 210 660-903 330-555 (562)
71 cd00671 ArgRS_core catalytic c 99.6 1.9E-15 4.2E-20 161.2 14.1 123 177-321 2-124 (212)
72 cd07959 Anticodon_Ia_Leu_AEc A 99.6 4.4E-15 9.5E-20 142.7 14.2 116 778-917 1-117 (117)
73 PLN02286 arginine-tRNA ligase 99.6 2.3E-12 5.1E-17 156.0 38.3 214 662-903 335-569 (576)
74 cd07958 Anticodon_Ia_Leu_BEm A 99.6 3.4E-14 7.3E-19 136.2 13.2 117 778-917 1-117 (117)
75 cd07957 Anticodon_Ia_Met Antic 99.5 8.8E-14 1.9E-18 135.6 11.9 96 819-917 34-129 (129)
76 cd07375 Anticodon_Ia_like Anti 99.3 5.1E-11 1.1E-15 113.4 13.2 116 781-906 2-117 (117)
77 PF00750 tRNA-synt_1d: tRNA sy 99.2 3.7E-10 8E-15 129.7 18.4 138 172-312 17-194 (354)
78 cd00802 class_I_aaRS_core cata 99.1 2.3E-10 5E-15 114.6 8.1 77 179-272 1-77 (143)
79 PF01921 tRNA-synt_1f: tRNA sy 98.6 5.7E-08 1.2E-12 109.8 6.7 100 173-280 21-128 (360)
80 COG1384 LysS Lysyl-tRNA synthe 98.4 3.6E-06 7.8E-11 98.0 15.6 98 175-279 19-124 (521)
81 cd09287 GluRS_non_core catalyt 97.9 2.2E-05 4.8E-10 85.0 7.7 92 182-310 6-97 (240)
82 PRK04156 gltX glutamyl-tRNA sy 97.8 6.4E-05 1.4E-09 90.5 9.5 97 179-312 103-199 (567)
83 PLN03233 putative glutamate-tR 97.5 0.00037 8.1E-09 83.1 9.9 96 178-312 12-107 (523)
84 TIGR03838 queuosine_YadB gluta 97.5 0.00037 7.9E-09 77.3 9.0 91 183-312 6-97 (272)
85 TIGR00463 gltX_arch glutamyl-t 97.5 0.00049 1.1E-08 82.9 10.8 96 178-312 94-189 (560)
86 PTZ00437 glutaminyl-tRNA synth 97.5 0.00044 9.6E-09 82.8 10.1 96 178-312 52-147 (574)
87 PTZ00402 glutamyl-tRNA synthet 97.5 0.00038 8.1E-09 84.0 9.5 93 178-309 53-146 (601)
88 PLN02907 glutamate-tRNA ligase 97.4 0.00059 1.3E-08 85.1 11.0 94 178-310 214-307 (722)
89 PF00749 tRNA-synt_1c: tRNA sy 97.4 0.00054 1.2E-08 77.8 9.4 92 183-312 7-98 (314)
90 TIGR00440 glnS glutaminyl-tRNA 97.3 0.00073 1.6E-08 80.8 9.4 94 181-312 4-97 (522)
91 PLN02859 glutamine-tRNA ligase 97.3 0.0011 2.3E-08 82.2 10.2 96 178-312 265-360 (788)
92 PRK05347 glutaminyl-tRNA synth 97.2 0.001 2.2E-08 79.8 9.2 97 178-312 30-126 (554)
93 PRK05710 glutamyl-Q tRNA(Asp) 97.2 0.0011 2.4E-08 74.4 9.0 95 179-312 7-102 (299)
94 cd00807 GlnRS_core catalytic c 97.2 0.0014 3.1E-08 71.0 9.3 92 180-310 4-95 (238)
95 PRK14895 gltX glutamyl-tRNA sy 97.1 0.0014 3E-08 78.3 9.4 95 179-312 6-101 (513)
96 COG0008 GlnS Glutamyl- and glu 97.1 0.0015 3.2E-08 77.6 9.4 96 178-312 10-106 (472)
97 PRK12558 glutamyl-tRNA synthet 97.1 0.0017 3.7E-08 76.6 9.8 94 180-312 5-98 (445)
98 PRK12410 glutamylglutaminyl-tR 97.1 0.0016 3.5E-08 76.4 9.0 91 183-312 5-95 (433)
99 PRK14703 glutaminyl-tRNA synth 97.0 0.0014 3.1E-08 81.7 8.4 97 178-312 32-128 (771)
100 TIGR00464 gltX_bact glutamyl-t 97.0 0.0021 4.5E-08 76.9 9.5 93 181-312 5-98 (470)
101 cd00418 GlxRS_core catalytic c 96.9 0.0032 6.9E-08 68.2 8.9 86 182-306 6-92 (230)
102 cd00808 GluRS_core catalytic c 96.9 0.0036 7.9E-08 68.2 9.0 87 181-306 5-100 (239)
103 PLN02627 glutamyl-tRNA synthet 96.7 0.0054 1.2E-07 73.6 9.5 96 178-312 46-150 (535)
104 PRK01406 gltX glutamyl-tRNA sy 96.6 0.0063 1.4E-07 72.9 9.4 95 179-312 6-108 (476)
105 cd07956 Anticodon_Ia_Arg Antic 95.7 0.25 5.4E-06 50.3 14.4 139 756-903 2-149 (156)
106 cd00805 TyrRS_core catalytic c 95.3 0.019 4.2E-07 63.9 4.9 58 656-718 152-210 (269)
107 cd00395 Tyr_Trp_RS_core cataly 95.2 0.032 6.9E-07 62.3 6.1 61 654-718 152-214 (273)
108 PRK13354 tyrosyl-tRNA syntheta 95.0 0.02 4.3E-07 67.5 4.0 59 654-716 185-244 (410)
109 KOG1147 Glutamyl-tRNA syntheta 94.7 0.086 1.9E-06 62.0 7.9 98 178-314 201-298 (712)
110 PRK05912 tyrosyl-tRNA syntheta 94.3 0.036 7.7E-07 65.4 3.8 58 654-715 187-245 (408)
111 KOG4426 Arginyl-tRNA synthetas 93.5 0.84 1.8E-05 52.7 12.5 162 689-867 434-611 (656)
112 cd00802 class_I_aaRS_core cata 93.2 0.084 1.8E-06 52.8 3.8 50 656-707 94-143 (143)
113 PF00579 tRNA-synt_1b: tRNA sy 92.7 0.1 2.3E-06 58.7 4.1 62 655-716 149-213 (292)
114 KOG1195 Arginyl-tRNA synthetas 92.7 1.7 3.7E-05 51.4 13.8 155 151-308 86-275 (567)
115 cd00418 GlxRS_core catalytic c 92.5 0.37 8E-06 52.4 7.8 22 688-709 139-160 (230)
116 PRK12556 tryptophanyl-tRNA syn 91.7 0.15 3.2E-06 58.5 3.8 59 654-713 148-213 (332)
117 PRK08560 tyrosyl-tRNA syntheta 91.4 0.2 4.3E-06 57.5 4.4 58 654-715 167-228 (329)
118 PRK12284 tryptophanyl-tRNA syn 90.6 0.19 4.1E-06 59.1 3.3 60 654-714 147-214 (431)
119 COG0495 LeuS Leucyl-tRNA synth 90.2 0.22 4.7E-06 62.9 3.5 78 477-559 137-229 (814)
120 KOG1148 Glutaminyl-tRNA synthe 90.0 0.77 1.7E-05 54.9 7.5 97 177-312 248-344 (764)
121 cd00808 GluRS_core catalytic c 89.5 0.66 1.4E-05 50.8 6.1 51 656-709 119-169 (239)
122 PLN02563 aminoacyl-tRNA ligase 89.0 0.48 1E-05 61.6 5.3 81 474-560 211-305 (963)
123 COG0180 TrpS Tryptophanyl-tRNA 88.9 0.36 7.8E-06 54.6 3.6 61 654-714 144-211 (314)
124 PRK12282 tryptophanyl-tRNA syn 88.8 0.33 7.1E-06 55.8 3.4 62 653-715 140-209 (333)
125 COG0162 TyrS Tyrosyl-tRNA synt 88.8 0.4 8.6E-06 56.2 4.0 53 656-712 181-234 (401)
126 PTZ00126 tyrosyl-tRNA syntheta 88.6 0.38 8.2E-06 56.3 3.7 59 654-715 209-271 (383)
127 TIGR00233 trpS tryptophanyl-tR 88.3 0.34 7.3E-06 55.6 3.0 60 654-715 138-206 (328)
128 TIGR00234 tyrS tyrosyl-tRNA sy 88.1 0.44 9.6E-06 55.7 3.9 55 656-714 178-233 (377)
129 PRK12285 tryptophanyl-tRNA syn 87.6 0.35 7.6E-06 56.3 2.6 59 655-715 203-265 (368)
130 TIGR00396 leuS_bact leucyl-tRN 86.9 0.37 8E-06 62.0 2.5 81 475-560 130-225 (842)
131 PRK12283 tryptophanyl-tRNA syn 85.7 0.38 8.3E-06 56.1 1.6 24 692-715 254-277 (398)
132 cd00806 TrpRS_core catalytic c 85.5 0.76 1.6E-05 51.6 3.8 59 655-715 137-205 (280)
133 KOG0435 Leucyl-tRNA synthetase 84.5 0.36 7.9E-06 58.5 0.7 75 477-557 160-249 (876)
134 PRK00927 tryptophanyl-tRNA syn 83.1 0.8 1.7E-05 52.7 2.8 61 654-715 137-209 (333)
135 PRK00390 leuS leucyl-tRNA synt 82.8 1.4 3E-05 56.7 4.9 86 474-564 132-231 (805)
136 PRK04156 gltX glutamyl-tRNA sy 82.8 2.9 6.2E-05 51.3 7.3 38 756-793 371-409 (567)
137 TIGR00464 gltX_bact glutamyl-t 80.7 4.1 8.8E-05 49.2 7.6 110 657-785 199-310 (470)
138 PRK12285 tryptophanyl-tRNA syn 79.6 9.4 0.0002 44.6 9.8 61 158-223 40-108 (368)
139 KOG1195 Arginyl-tRNA synthetas 77.2 32 0.00069 41.3 13.0 189 685-902 356-559 (567)
140 PLN02486 aminoacyl-tRNA ligase 76.7 11 0.00024 44.3 9.3 45 173-222 70-115 (383)
141 PLN02486 aminoacyl-tRNA ligase 74.9 3 6.4E-05 48.9 4.0 54 658-715 222-279 (383)
142 cd00671 ArgRS_core catalytic c 74.8 3.6 7.8E-05 44.2 4.4 50 658-708 162-212 (212)
143 cd00807 GlnRS_core catalytic c 71.9 11 0.00025 41.2 7.4 31 756-786 197-227 (238)
144 cd00805 TyrRS_core catalytic c 68.9 4.4 9.5E-05 45.3 3.5 35 185-223 8-43 (269)
145 PRK01406 gltX glutamyl-tRNA sy 68.6 8.3 0.00018 46.6 6.0 108 657-785 209-319 (476)
146 PTZ00348 tyrosyl-tRNA syntheta 68.3 4.5 9.7E-05 50.7 3.7 58 654-715 174-236 (682)
147 cd00395 Tyr_Trp_RS_core cataly 66.4 5.3 0.00011 44.7 3.5 34 186-223 8-42 (273)
148 PF05746 DALR_1: DALR anticodo 66.1 29 0.00063 33.1 8.2 81 820-903 32-112 (119)
149 PLN03233 putative glutamate-tR 65.6 14 0.00031 44.9 7.1 78 689-793 233-317 (523)
150 PRK12410 glutamylglutaminyl-tR 65.4 15 0.00031 43.9 7.0 22 688-709 221-242 (433)
151 PRK13354 tyrosyl-tRNA syntheta 62.9 16 0.00034 43.4 6.7 44 175-223 32-76 (410)
152 cd09287 GluRS_non_core catalyt 61.8 20 0.00043 39.5 6.7 30 756-785 199-228 (240)
153 PRK14895 gltX glutamyl-tRNA sy 61.4 16 0.00035 44.4 6.5 49 659-710 200-248 (513)
154 COG0162 TyrS Tyrosyl-tRNA synt 57.8 14 0.00031 43.5 5.1 41 176-225 35-76 (401)
155 PF01927 Mut7-C: Mut7-C RNAse 57.7 7.1 0.00015 39.5 2.3 23 204-226 12-34 (147)
156 PRK12284 tryptophanyl-tRNA syn 56.9 21 0.00045 42.5 6.2 97 186-311 11-108 (431)
157 TIGR00234 tyrS tyrosyl-tRNA sy 56.2 9.6 0.00021 44.7 3.4 44 177-226 31-75 (377)
158 cd00806 TrpRS_core catalytic c 55.8 8.1 0.00018 43.4 2.6 36 185-223 7-42 (280)
159 KOG1149 Glutamyl-tRNA syntheta 55.6 63 0.0014 38.2 9.5 97 180-312 36-138 (524)
160 PRK08560 tyrosyl-tRNA syntheta 54.9 11 0.00023 43.5 3.4 43 176-223 30-72 (329)
161 PRK12558 glutamyl-tRNA synthet 52.4 34 0.00075 41.0 7.2 30 678-709 218-247 (445)
162 PTZ00402 glutamyl-tRNA synthet 48.9 39 0.00084 41.9 7.0 37 756-792 321-358 (601)
163 PRK05912 tyrosyl-tRNA syntheta 48.2 15 0.00033 43.5 3.4 40 176-220 33-73 (408)
164 TIGR00463 gltX_arch glutamyl-t 47.7 39 0.00086 41.6 6.8 77 688-792 315-399 (560)
165 PLN02859 glutamine-tRNA ligase 46.9 38 0.00082 43.2 6.6 73 683-785 483-562 (788)
166 PF00579 tRNA-synt_1b: tRNA sy 46.7 16 0.00035 41.1 3.2 43 176-223 5-47 (292)
167 PLN02886 aminoacyl-tRNA ligase 46.6 17 0.00037 42.7 3.4 60 654-714 183-266 (389)
168 TIGR00233 trpS tryptophanyl-tR 45.0 13 0.00029 42.7 2.2 41 178-223 4-44 (328)
169 KOG4426 Arginyl-tRNA synthetas 44.7 1.8E+02 0.004 34.4 11.0 47 174-220 187-233 (656)
170 KOG2145 Cytoplasmic tryptophan 43.6 24 0.00052 39.3 3.7 85 172-291 81-170 (397)
171 PRK05347 glutaminyl-tRNA synth 43.1 64 0.0014 39.7 7.5 31 756-786 303-333 (554)
172 TIGR00440 glnS glutaminyl-tRNA 41.6 43 0.00094 40.9 5.8 72 684-785 226-303 (522)
173 smart00836 DALR_1 DALR anticod 41.0 1.9E+02 0.004 27.7 9.2 80 821-903 36-115 (122)
174 PLN02886 aminoacyl-tRNA ligase 40.1 29 0.00063 40.9 3.9 95 185-310 54-149 (389)
175 PRK00927 tryptophanyl-tRNA syn 39.7 19 0.00041 41.6 2.4 32 185-220 9-40 (333)
176 PRK05710 glutamyl-Q tRNA(Asp) 37.3 33 0.00072 39.0 3.7 30 679-710 215-244 (299)
177 cd06545 GH18_3CO4_chitinase Th 36.9 1.3E+02 0.0029 33.0 8.4 102 184-308 33-134 (253)
178 PLN02381 valyl-tRNA synthetase 36.1 59 0.0013 43.4 6.3 17 184-200 169-185 (1066)
179 PTZ00437 glutaminyl-tRNA synth 34.4 44 0.00095 41.2 4.3 72 696-794 280-358 (574)
180 KOG0614 cGMP-dependent protein 33.7 32 0.0007 41.4 2.9 27 289-315 523-549 (732)
181 PF04918 DltD_M: DltD central 32.2 35 0.00076 35.2 2.7 25 506-531 23-47 (163)
182 PRK12556 tryptophanyl-tRNA syn 31.8 39 0.00084 39.0 3.2 36 186-223 12-47 (332)
183 TIGR03838 queuosine_YadB gluta 31.7 43 0.00094 37.6 3.5 29 680-710 209-237 (272)
184 PLN02627 glutamyl-tRNA synthet 31.6 1.1E+02 0.0023 37.8 6.9 33 676-710 269-301 (535)
185 COG0008 GlnS Glutamyl- and glu 31.6 71 0.0015 38.7 5.5 25 688-713 236-260 (472)
186 PRK12283 tryptophanyl-tRNA syn 28.0 38 0.00083 39.9 2.3 29 186-219 11-40 (398)
187 COG0180 TrpS Tryptophanyl-tRNA 26.8 1.1E+02 0.0023 35.2 5.5 46 176-227 5-51 (314)
188 PTZ00126 tyrosyl-tRNA syntheta 26.1 61 0.0013 38.2 3.6 40 177-220 67-106 (383)
189 PTZ00348 tyrosyl-tRNA syntheta 25.7 55 0.0012 41.4 3.3 41 175-220 31-72 (682)
190 KOG2144 Tyrosyl-tRNA synthetas 24.4 50 0.0011 37.1 2.2 56 654-718 176-233 (360)
191 PF00749 tRNA-synt_1c: tRNA sy 23.2 68 0.0015 36.7 3.2 48 660-711 204-252 (314)
192 KOG2623 Tyrosyl-tRNA synthetas 22.8 65 0.0014 37.6 2.8 56 654-716 226-287 (467)
193 PF12569 NARP1: NMDA receptor- 22.2 93 0.002 38.2 4.2 20 14-33 370-389 (517)
194 PLN02907 glutamate-tRNA ligase 20.4 2.3E+02 0.005 36.4 7.2 37 756-792 481-518 (722)
195 PRK12282 tryptophanyl-tRNA syn 20.0 52 0.0011 38.0 1.4 15 186-200 11-25 (333)
No 1
>KOG0432 consensus Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.9e-249 Score=2136.44 Aligned_cols=883 Identities=60% Similarity=1.031 Sum_probs=845.8
Q ss_pred CCcCcCCCCCCCCcccccchhhhcCCCChhHHHHHHHHHHHcCCcccCCC-CCCCcEEEECCCCCCCCCCCcchhHHHHH
Q 001708 122 NAEEFVDPETPLGEKKRMSKQMAKEYNPSSVEKSWYSWWENSGYFIADNK-SSKPSFVIVLPPPNVTGALHIGHALTTAI 200 (1022)
Q Consensus 122 ~~~~~~~~~t~~~~k~~~~~~~~~~y~p~~vE~~w~~~W~~~~~f~~~~~-~~k~~f~i~~pPPy~nG~LHiGHal~~~i 200 (1022)
++...+.++|++|+|++++.+++..|+|..||++||.||+++|+|+|+.. ...+.|+|+.||||+||.||||||++.++
T Consensus 21 ~~~~~~~~~t~~ge~k~~~~~~~~~y~p~~vE~~wy~ww~k~g~fkp~~~~~~~~~f~i~~PPPNVTG~LHiGHALt~ai 100 (995)
T KOG0432|consen 21 EEVASYVPSTAPGEKKDLSGPLPAAYSPAYVESAWYKWWEKQGFFKPEYGPNPGGVFVIPLPPPNVTGSLHIGHALTVAI 100 (995)
T ss_pred CCcccccCCCCcchhhccCCcccccCCccchHHHHHHHHHHcCCCCcccCCCCCCcceeecCCCCcccccchhHHHHHHH
Confidence 45578899999999999999999999999999999999999999999986 34579999999999999999999999999
Q ss_pred HHHHHHHHHhCCCeeeeeccCCccChhHHHHHHHHHHHHhCCCccccChHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q 001708 201 QDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWKWKDEYGGTILRQQRRLGASLDW 280 (1022)
Q Consensus 201 ~Dii~Ry~rm~G~~Vl~~pG~D~~Glp~q~~vEk~l~~~~~~~~~~~g~e~f~~~~~~~~~~~~~~i~~ql~rlG~s~DW 280 (1022)
+|+++||+||+||+|+|+||+||+||+||++|||+++++.|++||++||++|+++||+|+++|+.+|.+||++||.|+||
T Consensus 101 qD~i~R~~rm~G~~vlw~PG~DHAGIATQ~VVEK~l~~~~~~~Rh~lgRe~F~~~vw~Wk~e~g~~I~~Qlk~lGas~DW 180 (995)
T KOG0432|consen 101 QDALARYNRMHGYQVLWVPGTDHAGIATQVVVEKQLAREGGKTRHDLGREEFLKEVWEWKEEYGGRIYNQLKRLGASLDW 180 (995)
T ss_pred HHHHHHHHHhcCCeeeecCCccccchhHHHHHHHHHHHhcCcchhhcCHHHHHHHHHHHHHHhCccHHHHHHHhcCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccCChhhHHHHHHHHHHHHHcCcEEEcceeeeecCCCCccccccccccccCCCceEEeecCccccccceeeEeEee
Q 001708 281 SRECFTMDEKRSKAVTEAFVRLYKEGLIYRDLRLVNWDCVLRTAISDIEVDYVDIPKREMRNVPGYEKQVEFGVLTSFAY 360 (1022)
Q Consensus 281 ~r~~~T~d~~~~~~v~~~F~~L~ekGlIyr~~~~V~W~p~~~TaLsd~EVe~~~~~~~t~~~vp~y~~~~e~g~l~~~~y 360 (1022)
+|++|||||..+++|.++|++||++|+|||++++|||||.++|+|||+||+++++.++|+++||||+.+|+||+|++|+|
T Consensus 181 ~re~fTmD~~~s~AV~eAFvrL~eeglIyR~~rlVNW~~~L~saiSdiEVe~~ei~~~t~l~vpGyd~~VeFG~L~~faY 260 (995)
T KOG0432|consen 181 DREAFTMDPKLSRAVTEAFVRLHEEGLIYRANRLVNWCPALRSAISDIEVESVEIPGRTLLSVPGYDTKVEFGVLYSFAY 260 (995)
T ss_pred cHhhcccCHHHHHHHHHHHHHHHhcCceEecCceeeechhHHhhhhhheecceecCCCceEecCCCCcceeeeeeeEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCcceEEEeeccccccccCcEEEEcCCccccccccCCeeecCCCCCccceEeCCccccCCCCCCceecCCCCCcchH
Q 001708 361 PLEGGLGEIVVATTRVETMLGDTAIAIHPEDARYSHLHGKFAIHPFNGRKIPIICDAILVDPKFGTGAVKITPAHDPNDF 440 (1022)
Q Consensus 361 ~l~~~~~~l~v~TTrPeTl~g~~avaV~P~d~ry~~L~G~~~~~P~~~~~~pIi~~~~~V~~~~GTG~V~~~PaH~~~Dy 440 (1022)
+++|+++.|+|+|||||||+||+||||||+|+||+||+|+++.|||+++.+|||+|.+ |||+||||+||||||||++||
T Consensus 261 ~v~gs~~~i~VaTTRpET~lGDvAvAVhP~D~RYk~lhGk~~~hP~~~r~lPiI~D~~-Vd~~fGTGaVKITPaHd~nDy 339 (995)
T KOG0432|consen 261 PVEGSDEEIVVATTRPETILGDVAVAVHPDDDRYKHLHGKFVKHPFTGRKLPIICDIA-VDMEFGTGAVKITPAHDPNDY 339 (995)
T ss_pred eccCCCCeEEEecCCccccccceeEEeCCCCcccccccCceeecCCCCCccceeeccc-ccccccccceEecCCCChhHH
Confidence 9999999999999999999999999999999999999999999999999999999985 999999999999999999999
Q ss_pred HHHHHcCCceeeeeCCCCccccCCCCCCCCCChhhHHHHHHHHHHHcCCccccccccccccccccCCCceecccccccce
Q 001708 441 DVGKRHNLEFINIFTDDGKINSNGGLEFEGMPRFKAREAVNEALKKKGLYRGAKDNEMRLGLCSRSNDVVEPMIKPQWYV 520 (1022)
Q Consensus 441 ~~~~~~~L~~i~iid~~G~~~e~~g~~f~G~~~~~ar~~vi~~L~~~gll~~~~~~~~~~p~c~Rs~~~i~~~~~~QWFi 520 (1022)
++|+||||+++|||++||.++..|| +|+||+||+||++|++.|++.||+++.++|+|++|+|+||||+|||+++|||||
T Consensus 340 EvgkRh~L~~~ni~~~dG~l~~~~g-ef~Gm~RFeAR~kvv~~L~e~gL~~g~~~h~mvlpiCSRsgDVIEpllkpQW~v 418 (995)
T KOG0432|consen 340 EVGKRHNLEFINIFTDDGLLNNVCG-EFKGMKRFEAREKVVEKLKELGLYVGKENHPMVLPICSRSGDVIEPLLKPQWFV 418 (995)
T ss_pred HHHHhcCCCceeEEcCCCceeccch-hccCcHHHHHHHHHHHHHHHhhhhhccCCCceeccccCCCCCcccccccchhee
Confidence 9999999999999999999999999 999999999999999999999999999999999999999999999999999999
Q ss_pred echHHHHHHHHhhhccCCCceEEeccccHHHHHHHHhhccCccceeccCCCCccCcceeccCchhhhccCCCCcceEEec
Q 001708 521 NCNSMAMEALYAVMDDDKKKLELIPRQYTAEWRRWLEAIRDWCVSRQLWWGHQIPAWYVTLEDDELKELGSYNDHWIVAR 600 (1022)
Q Consensus 521 ~~~~l~~~al~~v~~~~~~~i~~~P~~~~~~~~~wl~~l~DWcISRQ~~WG~pIP~~~~~~~~~~~~~~~~~~~~w~~~~ 600 (1022)
+|++|+++|+++| ++|++++.|+.++++|.+|++|++|||||||+||||+||+|++..+++ ....++|++++
T Consensus 419 ~c~ema~~A~~av---~sG~L~i~P~~~~k~w~~W~~~i~DWCiSRQLWWGHrIPAy~v~~~~~-----~~ee~~Wvvar 490 (995)
T KOG0432|consen 419 SCKEMAKKALKAV---ESGKLEILPEFHEKEWYRWLENIRDWCISRQLWWGHRIPAYFVNLSDG-----RAEEDYWVVAR 490 (995)
T ss_pred ehHHHHHHHHHHH---hcCCeEECchHHHHHHHHHHhhccccchhhhhhhccccceeeeecccC-----CCccceeEEeC
Confidence 9999999999999 999999999999999999999999999999999999999999976532 23456999999
Q ss_pred CHHHHHHHHhhhc-CCCCcccccCCCcEEEEeccCccccccccCCCCChhhhhcCCcCcccccccccchHHHHHHHHHhh
Q 001708 601 DEKEALAVANKKF-SGKKFEMCQDPDVLDTWFSSGLFPLSVLGWPDDTDDLKAFYPTSVLETGHDILFFWVARMVMLGIK 679 (1022)
Q Consensus 601 ~~~ea~~~~~~~~-~~~~~~~~~d~DvlDtWFdSgl~p~s~lg~p~~~~d~~~~~P~dl~~~G~Dil~fW~a~m~~~~~~ 679 (1022)
++++|++++..++ |+..++++||+||||||||||+||||++|||++++||..|||.++++||+||+||||+||+|+|+.
T Consensus 491 seeeA~ekaa~k~g~~~~~~L~qDpDVLDTWFSS~L~PfS~lGWP~~t~d~~~fyP~sllETG~DILfFWVaRMvmLg~k 570 (995)
T KOG0432|consen 491 SEEEAREKAAEKFGPGKEFTLEQDPDVLDTWFSSGLWPFSTLGWPEETKDFKNFYPLSLLETGHDILFFWVARMVMLGLK 570 (995)
T ss_pred CHHHHHHHHHHHhCCcccceeecCccHHHhhhhcccccchhcCCccccccHHhcCCchhhhcCchHHHHHHHHHHHhhhh
Confidence 9999999999999 788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCceEEEeccceeCCCCccceecCCcccCcchhhccccchhHHHhhhcCCCChHHHHHHHhcccCCCCCCCCCCCc
Q 001708 680 LGGEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGT 759 (1022)
Q Consensus 680 l~~~~Pfk~V~~Hg~v~D~~GrKMSKSlGNvIdP~dvI~g~~l~~l~~~l~~~nl~~~e~~~a~~~~~~~~~~~i~~~Ga 759 (1022)
|+|++||++|++||+|||.+|||||||+||||||+|||+|++||+||++|++|||||+|+++|++||+++||||||+||+
T Consensus 571 LtG~lPF~~V~LH~mVRDa~GRKMSKSLGNVIDPlDVI~Gisle~L~~~L~~gNLdp~Ev~~a~~gq~kdFPnGIpeCGt 650 (995)
T KOG0432|consen 571 LTGELPFKEVLLHGLVRDAHGRKMSKSLGNVIDPLDVIDGISLEKLHAKLLSGNLDPREVEKAKKGQKKDFPNGIPECGT 650 (995)
T ss_pred hcCCCCchheeechhhccccccccchhhccccCHHHHhccccHHHHHHHHHcCCCCHHHHHHHHHHHHhhcCCCCcccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhccCCCcccccchhhhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCC-hhhHHHHHHHHHHHHHHH
Q 001708 760 DALRFALVSYTAQSDKINLDIQRVVGYRQWCNKLWNAVRFSMSKLGEGFVPPLKLHPHNLP-FSCKWILSVLNKAISRTA 838 (1022)
Q Consensus 760 DaLR~~L~~~~~~~~Dinf~~~~~~~~r~f~nkl~N~~rf~l~~l~~~~~p~~~~~~~~~~-~~D~wil~~L~~~~~~v~ 838 (1022)
|||||+||+++.+++|||+|++++++||+|||||||++||+++.++++|.|.........+ ..|+||++||+.+++.|+
T Consensus 651 DALRFaL~s~~~~~~dInLDv~rv~g~r~FcNKlWNa~rF~l~~lg~~~~p~~~~~~~~~~~~~d~WIlsrL~~av~~~~ 730 (995)
T KOG0432|consen 651 DALRFALCSYTTQGRDINLDVLRVEGYRHFCNKLWNATRFALQRLGENFVPSPTEDLSGNESLVDEWILSRLAEAVEEVN 730 (995)
T ss_pred HHHHHHHHHccccCccccccHHHHhhHHHHHHHHHHHHHHHHHhcccCCCCCcccccCCCcchhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998889887654444333 399999999999999999
Q ss_pred hhhhcCCHHHHHHHHHHHHHhhhhHHHHHhhcccccCCCcccHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHhCC
Q 001708 839 SSLNSYEFSDAASTVYSWWQYQFCDVFIEAIKPYFAGDNPAFASERSAAQHVLWVCLETGLRLLHPFMPFVTEELWQRLP 918 (1022)
Q Consensus 839 ~a~e~~~f~~a~~~i~~f~~~~l~~~Yle~~K~~l~~~~~~~~~~r~~a~~~L~~~L~~~l~LL~PfmPfitEelwq~L~ 918 (1022)
++|+.|+|+.|++++++||+++|||+|+|.+||.+++++.. .+..|..||+.||+.+|+||||||||+||||||+||
T Consensus 731 ~~~~~~~f~~at~a~~~Fwl~~lCDVYlE~~Kp~l~~~~~~---~~~~a~~vL~~~ld~gLrll~PfMPFvtEel~qrlP 807 (995)
T KOG0432|consen 731 ESLEARNFHLATSALYAFWLYDLCDVYLEATKPLLWGDSEA---LAYEARRVLYRCLDNGLRLLHPFMPFITEELWQRLP 807 (995)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCCcHH---HHHHHHHHHHHHHHHHHHHhcCcccccHHHHHHhcc
Confidence 99999999999999999999999999999999999987644 678899999999999999999999999999999999
Q ss_pred CCCCCCCCCCeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCC--CcceEEEEecCchhHHHHHHHHH
Q 001708 919 QPKGCATKESIMLCEYPSAVEGWTDERAEFEMDLVESTVRCIRSLRAEVLGKQKN--ERLPAIAFCQTKGVSEIIRSHEL 996 (1022)
Q Consensus 919 ~~~~~~~~~SI~~~~~P~~~~~~~~~~~e~~~~~v~~iv~~iRslr~~~~~k~i~--~~~~v~i~~~~~~~~~~l~~~~~ 996 (1022)
.+.+ ....||+.++||...+.|.|+++|.+|+.+++++..+|++|+.| +++ .+..+++..+++....+++.+.+
T Consensus 808 ~r~~-~~~~si~va~yP~~~~~~~~~e~E~~~~~v~~i~~~iRslra~y---~l~~~~~~~v~~~~s~~~~~~~~~~~~~ 883 (995)
T KOG0432|consen 808 RRKG-SKPASISVSPYPSSNELWRNEELESAFELVLAITRAIRSLRAEY---NLSPKPRGSVFIASSDEEDKSILKEFLD 883 (995)
T ss_pred cCCC-CCCCceEecCCCchhcccCCHHHHHHHHHHHHHHHHHHHHHHhc---CCCCCCceEEEEecCCCcchhHHHHHHH
Confidence 8765 35679999999988889999999999999999999999999999 874 35667777776666678899999
Q ss_pred HHHHhhccCcEEEecCCC-CCCCCcc
Q 001708 997 EIVTLSTSSSLKALSFGL-LPLKIVV 1021 (1022)
Q Consensus 997 ~I~~L~~v~~v~i~~~~~-~p~~~~~ 1021 (1022)
.|.++.+++.|.++.+++ .|.||+.
T Consensus 884 ~i~~l~~~~~v~i~~~~~~~~~g~~~ 909 (995)
T KOG0432|consen 884 EISTLTNLELVSISSPAEEDAQGCAL 909 (995)
T ss_pred HHHHhhccceeEeccCCccccCcceE
Confidence 999999999999998877 7899985
No 2
>PLN02381 valyl-tRNA synthetase
Probab=100.00 E-value=4.5e-217 Score=2023.60 Aligned_cols=972 Identities=81% Similarity=1.334 Sum_probs=860.4
Q ss_pred cccCCcccccccchHHHhhhhhhhhhHHHHHHHHhHHHHHHHHH-HHHHHHHhhhcCCCccccccccccccCCCCCCcCc
Q 001708 48 SSIMTEPEKKIETAEDLERKKKKEEKAKEKELKKLKALEKAEQA-KLKAQQKQEQGGNSLKKSVKKNVKRDDGEDNAEEF 126 (1022)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (1022)
++.+.++++++.+.++++++.+++.+++++|.++.|+ .+|++ +|++++++..+.+.+++.+|+..+++.+.+.+...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (1066)
T PLN02381 2 SRTESEAEKKILTEEELERKKKKEEKAKEKELKKLKA--AQKEAKAKLQAQQASDGTNVPKKSEKKSRKRDVEDENPEDF 79 (1066)
T ss_pred CCcccchhcccCCHHHHHHHHhhhHHHHHHHHHHHHH--HHHHHHHHHHHHhccccCCCcccchhhhhhhhhhhcccccc
Confidence 5678899999999999999877665555444443333 33333 22222222121111222222222212222333344
Q ss_pred CCCCCCCCcccccchhhhcCCCChhHHHHHHHHHHHcCCcccCCCCCCCcEEEECCCCCCCCCCCcchhHHHHHHHHHHH
Q 001708 127 VDPETPLGEKKRMSKQMAKEYNPSSVEKSWYSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIR 206 (1022)
Q Consensus 127 ~~~~t~~~~k~~~~~~~~~~y~p~~vE~~w~~~W~~~~~f~~~~~~~k~~f~i~~pPPy~nG~LHiGHal~~~i~Dii~R 206 (1022)
..|+|++|+|++++.+|++.|||++||++||++|+++|+|++..+.++++|+|++|||||||.||||||+|++++|+++|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~yd~~~iE~~w~~~W~~~~~f~~~~~~~~~~f~i~~ppPy~nG~lHiGHa~~~ti~Dii~R 159 (1066)
T PLN02381 80 IDPDTPFGQKKRLSSQMAKQYSPSAVEKSWYAWWEKSGYFGADAKSSKPPFVIVLPPPNVTGALHIGHALTAAIEDTIIR 159 (1066)
T ss_pred CCCCCCcchhhccchhcccCCCHHHHHHHHHHHHHHCCCccCCccCCCCcEEEEeCCCCCCCCccHHHHHHHHHHHHHHH
Confidence 58999999999998889999999999999999999999999977667889999999999999999999999999999999
Q ss_pred HHHhCCCeeeeeccCCccChhHHHHHHHHHHHHhCCCccccChHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcccc
Q 001708 207 WRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWKWKDEYGGTILRQQRRLGASLDWSRECFT 286 (1022)
Q Consensus 207 y~rm~G~~Vl~~pG~D~~Glp~q~~vEk~l~~~~~~~~~~~g~e~f~~~~~~~~~~~~~~i~~ql~rlG~s~DW~r~~~T 286 (1022)
|+||+||+|+|+|||||||||||.+||++++.+.|++++++||++|+++||+|++++++.|++||++||+|+||+|+|+|
T Consensus 160 y~rm~G~~vl~~~G~D~~Glp~e~~vek~l~~~~~~~~~~~~re~f~~~~~~~~~~~~~~~~~q~~~lG~s~Dw~~~~~T 239 (1066)
T PLN02381 160 WKRMSGYNALWVPGVDHAGIATQVVVEKKLMRERHLTRHDIGREEFVSEVWKWKDEYGGTILNQLRRLGASLDWSRECFT 239 (1066)
T ss_pred HHHhCCCcccccCCCCCCcChHHHHHHHHhHhhcCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCchhccCCcccc
Confidence 99999999999999999999999999999988889999999999999999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHHcCcEEEcceeeeecCCCCccccccccccccCCCceEEeecCccccccceeeEeEeeecCCCc
Q 001708 287 MDEKRSKAVTEAFVRLYKEGLIYRDLRLVNWDCVLRTAISDIEVDYVDIPKREMRNVPGYEKQVEFGVLTSFAYPLEGGL 366 (1022)
Q Consensus 287 ~d~~~~~~v~~~F~~L~ekGlIyr~~~~V~W~p~~~TaLsd~EVe~~~~~~~t~~~vp~y~~~~e~g~l~~~~y~l~~~~ 366 (1022)
|||.|+++|+++|++||++|||||+.++|||||.|+|+|||+||+|+++.+++++.|||+...++||++++|+|++.+++
T Consensus 240 ~d~~~~~~v~~~F~~L~~~GlIyr~~~~VnWcP~~~TaLSd~EVey~d~~~~s~~~~~~~~~~~~~g~~~~~~Y~l~~~~ 319 (1066)
T PLN02381 240 MDEQRSKAVTEAFVRLYKEGLIYRDIRLVNWDCTLRTAISDVEVDYIDIKERTLLKVPGYDKPVEFGVLTSFAYPLEGGL 319 (1066)
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEeccccccCCCCCCCCccHHHhhhhccccchhhcccCCCcceeeEEEEEEEEEecCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998766
Q ss_pred ceEEEeeccccccccCcEEEEcCCccccccccCCeeecCCCCCccceEeCCccccCCCCCCceecCCCCCcchHHHHHHc
Q 001708 367 GEIVVATTRVETMLGDTAIAIHPEDARYSHLHGKFAIHPFNGRKIPIICDAILVDPKFGTGAVKITPAHDPNDFDVGKRH 446 (1022)
Q Consensus 367 ~~l~v~TTrPeTl~g~~avaV~P~d~ry~~L~G~~~~~P~~~~~~pIi~~~~~V~~~~GTG~V~~~PaH~~~Dy~~~~~~ 446 (1022)
.+|+|||||||||+|++||||||+|+||++|+|++|.|||.++.+|||+|+.|||+++|||+||+|||||++||++|++|
T Consensus 320 ~~i~vATtRpEti~g~~avaV~P~d~ry~~L~G~~~~~Pl~~~~ipIi~d~~~Vd~e~GTG~V~i~PaHd~~Dy~~~~~~ 399 (1066)
T PLN02381 320 GEIVVATTRIETMLGDTAIAIHPDDERYKHLHGKFAVHPFNGRKLPIICDAILVDPNFGTGAVKITPAHDPNDFEVGKRH 399 (1066)
T ss_pred CEEEEecCCHHHHhcccceeeCCCCcchhhhCCCEEECCCCCCEEEEEECCccccccCCCCcEEecCCCChHHHHHHHHc
Confidence 78999999999999999999999999999999999999999999999997645999999999999999999999999999
Q ss_pred CCceeeeeCCCCccccCCCCCCCCCChhhHHHHHHHHHHHcCCccccccccccccccccCCCceecccccccceechHHH
Q 001708 447 NLEFINIFTDDGKINSNGGLEFEGMPRFKAREAVNEALKKKGLYRGAKDNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMA 526 (1022)
Q Consensus 447 ~L~~i~iid~~G~~~e~~g~~f~G~~~~~ar~~vi~~L~~~gll~~~~~~~~~~p~c~Rs~~~i~~~~~~QWFi~~~~l~ 526 (1022)
||+++++||++|+|++++|+.|.||++++||+.|++.|++.|++++.+++.|+||+|||||+||||++++||||+|++++
T Consensus 400 ~L~~i~~id~~G~~~~~~~~~~~Gl~~~eAr~~Ii~~L~~~g~l~~~~~~~h~~p~c~R~~~~ie~~~~~QWFi~~~~l~ 479 (1066)
T PLN02381 400 NLEFINIFTDDGKINSNGGSEFAGMPRFAAREAVIEALQKKGLYRGAKNNEMRLGLCSRTNDVVEPMIKPQWFVNCSSMA 479 (1066)
T ss_pred CCCeeeeeCCCceeCCCCccccCCCCHHHHHHHHHHHHHhCCCEecceeeecCCCeeCCCCceEEEeecccceEEchHHH
Confidence 99999999999999998765799999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhccCCCceEEeccccHHHHHHHHhhccCccceeccCCCCccCcceeccCchhhhccCCCCcceEEecCHHHHH
Q 001708 527 MEALYAVMDDDKKKLELIPRQYTAEWRRWLEAIRDWCVSRQLWWGHQIPAWYVTLEDDELKELGSYNDHWIVARDEKEAL 606 (1022)
Q Consensus 527 ~~al~~v~~~~~~~i~~~P~~~~~~~~~wl~~l~DWcISRQ~~WG~pIP~~~~~~~~~~~~~~~~~~~~w~~~~~~~ea~ 606 (1022)
+++++++..+++++|+|+|++++++|.+||+|++|||||||||||||||+|||..+++.+...+.+++.|+++++..++.
T Consensus 480 ~~al~av~~~~~~~i~~~P~~~~~~~~~wl~n~~DWcISRQr~WG~pIPiw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 559 (1066)
T PLN02381 480 KQALDAAIDGENKKLEFIPKQYLAEWKRWLENIRDWCISRQLWWGHRIPAWYVTLEDDQLKELGSYNDHWVVARNESDAL 559 (1066)
T ss_pred HHHHHHHhhccCCceEEEChHHHHHHHHHHhcCccceeeeecccCCccceEEeccChhhcccCCcccceEEEccchHhhc
Confidence 99999883334689999999999999999999999999999999999999999744322222344557899988888777
Q ss_pred HHHhhhcCCCCcccccCCCcEEEEeccCccccccccCCCCChhhhhcCCcCcccccccccchHHHHHHHHHhhhcCCCCc
Q 001708 607 AVANKKFSGKKFEMCQDPDVLDTWFSSGLFPLSVLGWPDDTDDLKAFYPTSVLETGHDILFFWVARMVMLGIKLGGEVPF 686 (1022)
Q Consensus 607 ~~~~~~~~~~~~~~~~d~DvlDtWFdSgl~p~s~lg~p~~~~d~~~~~P~dl~~~G~Dil~fW~a~m~~~~~~l~~~~Pf 686 (1022)
..++..|++....++|++||||||||||+||++++|||+++.+|++|||+|++++|+||+||||+||+|+|+.++|++||
T Consensus 560 ~~~~~~~~~~~~~~~rd~DVlDtWF~Sg~~p~~~lg~P~~~~~~~~~~P~d~~~~G~Dii~~W~~rmi~~~~~~~~~~PF 639 (1066)
T PLN02381 560 LEASQKFPGKKFELSQDPDVLDTWFSSGLFPLSVLGWPDDTDDLKAFYPTSVLETGHDILFFWVARMVMMGMQLGGDVPF 639 (1066)
T ss_pred chhhcccCCCccceeecCceeeEEEeCCchHHHHhcCCCCHHHHhccCCCeeeeecchhhhhHHHHHHHHHHHhCCCCch
Confidence 66655666655579999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred eEEEeccceeCCCCccceecCCcccCcchhhccccchhHHHhhhcCCCChHHHHHHHhcccCCCCCCCCCCCchHHHHHH
Q 001708 687 TKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFAL 766 (1022)
Q Consensus 687 k~V~~Hg~v~D~~GrKMSKSlGNvIdP~dvI~g~~l~~l~~~l~~~nl~~~e~~~a~~~~~~~~~~~i~~~GaDaLR~~L 766 (1022)
++|++||||+|++|+|||||+||||||.++|+|++++.|+.+|..|||+++|+++|.++|+++||+|||+||||||||||
T Consensus 640 k~v~~hG~V~D~~G~KMSKS~GNvIdP~~vi~~~~~~~l~~~~~~~~~~~~e~~~~~~~~~~~~p~gi~~yGADalR~~l 719 (1066)
T PLN02381 640 RKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLEGLHKRLEEGNLDPKELVVAKEGQKKDFPNGIAECGTDALRFAL 719 (1066)
T ss_pred HHheecceEECCCCCCCCCCCCCCCCHHHHHhhcchhhHHHhhhccccchhhhhhHhhhccccCCCCccccChHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhccCCCcccccchhhhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHhhhhcCCH
Q 001708 767 VSYTAQSDKINLDIQRVVGYRQWCNKLWNAVRFSMSKLGEGFVPPLKLHPHNLPFSCKWILSVLNKAISRTASSLNSYEF 846 (1022)
Q Consensus 767 ~~~~~~~~Dinf~~~~~~~~r~f~nkl~N~~rf~l~~l~~~~~p~~~~~~~~~~~~D~wil~~L~~~~~~v~~a~e~~~f 846 (1022)
++++..++|++|+++++.++|+|||||||++||+++++.++|.|........++.+|+||+++|+.+++.++++|++|+|
T Consensus 720 ~~~~~~~~di~~~~~~v~~~r~f~nKlwNa~rf~~~~~~~~~~~~~~~~~~~~~~~DrWILskL~~~i~~v~~~~e~y~F 799 (1066)
T PLN02381 720 VSYTAQSDKINLDILRVVGYRQWCNKLWNAVRFAMSKLGDDYTPPATLSVETMPFSCKWILSVLNKAISKTVSSLDAYEF 799 (1066)
T ss_pred HcCCccccccCccHHHHHHHHHHHHHHHHHHHHHHhhcccccCcccccCccccCHHHHHHHHHHHHHHHHHHHHHHhCCH
Confidence 99999999999999999999999999999999999888655655322222345789999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhHHHHHhhcccccCCCcccHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHhCCCCCCCCCC
Q 001708 847 SDAASTVYSWWQYQFCDVFIEAIKPYFAGDNPAFASERSAAQHVLWVCLETGLRLLHPFMPFVTEELWQRLPQPKGCATK 926 (1022)
Q Consensus 847 ~~a~~~i~~f~~~~l~~~Yle~~K~~l~~~~~~~~~~r~~a~~~L~~~L~~~l~LL~PfmPfitEelwq~L~~~~~~~~~ 926 (1022)
+.|++.+|+|+|++|||+||+.+|+|+++++...+..+++++.||+.+|+.+++||||||||+|||||+.|+...+....
T Consensus 800 ~~A~~~l~~F~~~dl~d~Yie~~K~~l~~~~~~~~~~r~~a~~~L~~vL~~llrLL~PfmPfitEELw~~L~~~~~~~~~ 879 (1066)
T PLN02381 800 SDAASTVYSWWQYQFCDVFIEAIKPYFAGDNPEFASERAAAQDTLWICLDTGLRLLHPFMPFVTEELWQRLPQPKDHTRK 879 (1066)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHhHHHHccCCccccHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhhhccCCCC
Confidence 99999999999999999999999999876532111156789999999999999999999999999999999752110123
Q ss_pred CCeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcceEEEEecCchhHHHHHHHHHHHHHhhccCc
Q 001708 927 ESIMLCEYPSAVEGWTDERAEFEMDLVESTVRCIRSLRAEVLGKQKNERLPAIAFCQTKGVSEIIRSHELEIVTLSTSSS 1006 (1022)
Q Consensus 927 ~SI~~~~~P~~~~~~~~~~~e~~~~~v~~iv~~iRslr~~~~~k~i~~~~~v~i~~~~~~~~~~l~~~~~~I~~L~~v~~ 1006 (1022)
+||++++||.+++.|.|++++..|+.+++++..||++|+++.+...+.+.++++.+.+....+.++.+...|++|+++++
T Consensus 880 ~SI~~~~~P~~~~~~~d~~le~~~~~l~~ii~~iR~lR~~~~~i~~k~~~~~~~~~~~~~~~~~l~~~~~~i~~l~~~~~ 959 (1066)
T PLN02381 880 DSIMISEYPSAVEAWTNEKVEYEMDLVLSTVKCLRSLRAEVLEKQKNERLPAFALCRNQEIAAIIKSHQLEILTLANLSS 959 (1066)
T ss_pred CeeEeCCCCCCCchhCCHHHHHHHHHHHHHHHHHHHHHHHccccccCcCCcEEEEcCCHHHHHHHHHHHHHHHHhhCCCe
Confidence 69999999999999999999999999999999999999997211225566777777776677889999999999999999
Q ss_pred EEEe-cCCC-CCCCCcc
Q 001708 1007 LKAL-SFGL-LPLKIVV 1021 (1022)
Q Consensus 1007 v~i~-~~~~-~p~~~~~ 1021 (1022)
|+++ .... .|.||+.
T Consensus 960 v~~~~~~~~~~~~~~~~ 976 (1066)
T PLN02381 960 LKVLLSENDAPPAGCAF 976 (1066)
T ss_pred eeeeccccccCccccee
Confidence 9986 3333 6888863
No 3
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.1e-217 Score=1926.15 Aligned_cols=790 Identities=51% Similarity=0.910 Sum_probs=735.9
Q ss_pred hhcCCCChhHHHHHHHHHHHcCCcccCCCCCCCcEEEECCCCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeeeeeccCC
Q 001708 143 MAKEYNPSSVEKSWYSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMD 222 (1022)
Q Consensus 143 ~~~~y~p~~vE~~w~~~W~~~~~f~~~~~~~k~~f~i~~pPPy~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG~D 222 (1022)
|++.|||.++|++||++|+++|+|++..+...++|+|.+|||||||.||||||++++++|+|+||+||+||+|+|+||||
T Consensus 1 ~~~~ydp~~iE~k~~~~W~~~~~f~~~~~~~~~~f~I~~PPPNVTG~LHmGHAl~~tl~D~l~RykRM~G~~vl~~pG~D 80 (877)
T COG0525 1 LPKTYDPKEIEEKWYKKWEESGYFKPDPNEDKPPFSIDTPPPNVTGSLHMGHALNYTLQDILARYKRMRGYNVLWPPGTD 80 (877)
T ss_pred CCCCCChhhhhHHHHHHHHhcCCccCCCCCCCCCcEEeCCCCCCCCcccchhhhhHHHHHHHHHHHHcCCCeeecCCCCC
Confidence 46789999999999999999999999875442559999999999999999999999999999999999999999999999
Q ss_pred ccChhHHHHHHHHHHHHhCCCccccChHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHH
Q 001708 223 HAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRL 302 (1022)
Q Consensus 223 ~~Glp~q~~vEk~l~~~~~~~~~~~g~e~f~~~~~~~~~~~~~~i~~ql~rlG~s~DW~r~~~T~d~~~~~~v~~~F~~L 302 (1022)
|||||||.+||+++..+ |++++|+|||+|+++||+|++++++.|++||+|||+|+||+|+||||||.++++|+++|++|
T Consensus 81 hAGIaTq~~VEk~l~~~-g~~r~d~gRe~Fl~~~weWk~e~~~~I~~Q~~rLG~S~DWsrE~fTmD~~~s~av~~~Fv~L 159 (877)
T COG0525 81 HAGIATQVVVEKQLAAE-GITRHDLGREEFLKKCWEWKEESGGTIREQLRRLGVSVDWSRERFTMDPGLSRAVQEAFVRL 159 (877)
T ss_pred CCCchHHHHHHHHHHHc-CCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccccccCCHHHHHHHHHHHHHH
Confidence 99999999999999665 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCcEEEcceeeeecCCCCccccccccccccCCCceEEeecCccccccceeeEeEeeecCCCcceEEEeeccccccccC
Q 001708 303 YKEGLIYRDLRLVNWDCVLRTAISDIEVDYVDIPKREMRNVPGYEKQVEFGVLTSFAYPLEGGLGEIVVATTRVETMLGD 382 (1022)
Q Consensus 303 ~ekGlIyr~~~~V~W~p~~~TaLsd~EVe~~~~~~~t~~~vp~y~~~~e~g~l~~~~y~l~~~~~~l~v~TTrPeTl~g~ 382 (1022)
|++|||||++++|||||.|+|||||+||+|++++ |.|+||+||+++++++|+|||||||||+||
T Consensus 160 y~~GlIYr~~~lVNWcP~~~TAiSd~EVe~~e~~----------------g~L~~i~y~l~~~~~~i~VATTRPEtmlgd 223 (877)
T COG0525 160 YEKGLIYRGERLVNWCPKCRTAISDIEVEYKEVE----------------GKLYYIKYPLADGDGYLVVATTRPETLLGD 223 (877)
T ss_pred HHCCceeecCCcccCCCccccchhhhhhccceee----------------eeEEEEEEecCCCCceEEEEecCccccccc
Confidence 9999999999999999999999999999999887 689999999999999999999999999999
Q ss_pred cEEEEcCCccccccccCCeeecCCCCCccceEeCCccccCCCCCCceecCCCCCcchHHHHHHcCCceeeeeCCCCcccc
Q 001708 383 TAIAIHPEDARYSHLHGKFAIHPFNGRKIPIICDAILVDPKFGTGAVKITPAHDPNDFDVGKRHNLEFINIFTDDGKINS 462 (1022)
Q Consensus 383 ~avaV~P~d~ry~~L~G~~~~~P~~~~~~pIi~~~~~V~~~~GTG~V~~~PaH~~~Dy~~~~~~~L~~i~iid~~G~~~e 462 (1022)
|||||||+|+||+||+|+++++|++++++|||+|++ ||++||||+||||||||+|||++|+|||||+++++|+||++++
T Consensus 224 tAVaVhP~DeRYk~LvGk~v~lPl~~r~IpIiaD~~-VD~eFGTG~VkItpahD~nD~e~~krh~Lp~i~i~d~dG~in~ 302 (877)
T COG0525 224 TAVAVHPDDERYKHLVGKEVILPLVGREIPIIADEY-VDPEFGTGAVKITPAHDFNDYEVGKRHNLPLINIIDEDGRINE 302 (877)
T ss_pred eEEEECCCChhhHhhcCCEEecCCCCCeeeeecCcc-cCCcCCCceEEecCCCCchhhhhhhcCCCCceEEECCCCeecc
Confidence 999999999999999999999999999999999996 9999999999999999999999999999999999999999998
Q ss_pred CCCCCCCCCChhhHHHHHHHHHHHcCCccccccccccccccccCCCceecccccccceechHHHHHHHHhhhccCCCceE
Q 001708 463 NGGLEFEGMPRFKAREAVNEALKKKGLYRGAKDNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKLE 542 (1022)
Q Consensus 463 ~~g~~f~G~~~~~ar~~vi~~L~~~gll~~~~~~~~~~p~c~Rs~~~i~~~~~~QWFi~~~~l~~~al~~v~~~~~~~i~ 542 (1022)
+++.+|+||+|++||++|++.|++.|+|++.+++.|++|+|+|||+||||++++||||++..+++.+++++ ++|+++
T Consensus 303 ~~~~~~~Gl~r~eAR~kIv~~L~~~GlLvk~e~~~h~V~~~~R~g~~IEp~ls~QWfVk~~~la~~~l~~~---~~g~i~ 379 (877)
T COG0525 303 EAAGEFAGLDRFEARKKIVEDLEEQGLLVKIEPHKHSVGHCERCGTPIEPLLSKQWFVKVLELAKKALEAV---KDGKIK 379 (877)
T ss_pred CCccccCCCcHHHHHHHHHHHHHhCCCeEeeeeccccCccccCCCceeeeeecceeeEEhHhhHHHHHHHH---hcCCce
Confidence 88549999999999999999999999999999999999999999999999999999999999999999999 888999
Q ss_pred EeccccHHHHHHHHhhccCccceeccCCCCccCcceeccCchhhhccCCCCcceEEecCHHHHHHHHhhhcCCCCccccc
Q 001708 543 LIPRQYTAEWRRWLEAIRDWCVSRQLWWGHQIPAWYVTLEDDELKELGSYNDHWIVARDEKEALAVANKKFSGKKFEMCQ 622 (1022)
Q Consensus 543 ~~P~~~~~~~~~wl~~l~DWcISRQ~~WG~pIP~~~~~~~~~~~~~~~~~~~~w~~~~~~~ea~~~~~~~~~~~~~~~~~ 622 (1022)
|+|+.+++++.+||++++|||||||||||||||+|||..| +.+++++++.++... ...|+. ..++|
T Consensus 380 f~P~~~~~~~~~W~~~i~DWcISRQlwwGh~IPvWy~~~~-----------g~v~v~~~~~~~~~~-~~~~~~--~~~~q 445 (877)
T COG0525 380 FVPERMEKRYEDWMENIRDWCISRQLWWGHRIPVWYCKEC-----------GNVVVAEEEPEDPAA-AEKCPK--EELEQ 445 (877)
T ss_pred EecHHHHHHHHHHHhhCcCceeeeeeecCcccceEEecCC-----------CcEEeCCccccchhh-hccCch--hcccC
Confidence 9999999999999999999999999999999999999755 478888775554433 222322 56899
Q ss_pred CCCcEEEEeccCccccccccCCCCChhhhhcCCcCcccccccccchHHHHHHHHHhhhcCCCCceEEEeccceeCCCCcc
Q 001708 623 DPDVLDTWFSSGLFPLSVLGWPDDTDDLKAFYPTSVLETGHDILFFWVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRK 702 (1022)
Q Consensus 623 d~DvlDtWFdSgl~p~s~lg~p~~~~d~~~~~P~dl~~~G~Dil~fW~a~m~~~~~~l~~~~Pfk~V~~Hg~v~D~~GrK 702 (1022)
|+||||||||||+|||+++|||+++.+|++|||+|+++||+||||||++||+|+|+.++|++||++|++||+|+|++|+|
T Consensus 446 d~DVLDTWFSS~LwPfstlgWp~~t~~l~~fyPt~llvtG~DIIffWvarmi~~~~~~~~~~PFk~V~ihGLVrDe~G~K 525 (877)
T COG0525 446 DEDVLDTWFSSSLWPFSTLGWPEETPDLKKFYPTDLLVTGHDIIFFWVARMIMRGLHLTGEVPFKDVYIHGLVRDEQGRK 525 (877)
T ss_pred CcchhhhhhhcccccccccCCCCcchHHHhcCCCccccccchhhHHHHHHHHHHHHHhcCCCCccEEEEeeeEEcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceecCCcccCcchhhccccchhHHHhhhcCCCChHHHHHHHhcccCCCCCCCCCCCchHHHHHHHhccCCCcccccchhh
Q 001708 703 MSKSLGNVIDPLEVINGISLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLDIQR 782 (1022)
Q Consensus 703 MSKSlGNvIdP~dvI~g~~l~~l~~~l~~~nl~~~e~~~a~~~~~~~~~~~i~~~GaDaLR~~L~~~~~~~~Dinf~~~~ 782 (1022)
||||+||||||+|+|+ +||||||||||++.+.+|+|++|+.++
T Consensus 526 MSKS~GNvIDP~d~I~-------------------------------------~yGaDAlRf~la~~~~~G~Di~~~~~~ 568 (877)
T COG0525 526 MSKSKGNVIDPLDVID-------------------------------------KYGADALRFTLASLASPGRDINFDEKR 568 (877)
T ss_pred CcccCCCcCCHHHHHH-------------------------------------HhChHHHHHHHHhccCCCcccCcCHHH
Confidence 9999999999999999 999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHhhhh
Q 001708 783 VVGYRQWCNKLWNAVRFSMSKLGEGFVPPLKLHPHNLPFSCKWILSVLNKAISRTASSLNSYEFSDAASTVYSWWQYQFC 862 (1022)
Q Consensus 783 ~~~~r~f~nkl~N~~rf~l~~l~~~~~p~~~~~~~~~~~~D~wil~~L~~~~~~v~~a~e~~~f~~a~~~i~~f~~~~l~ 862 (1022)
++++|+|||||||+.||+++++.+ ..+... .....+.+|+|||++|+++++.++++|++|+|..|.+++|+|+|++||
T Consensus 569 ~~~~rnF~nKlWNa~Rfv~~~~~~-~~~~~~-~~~~~~~~drWIls~l~~~v~~v~~~ld~y~f~~a~~~ly~F~W~~fc 646 (877)
T COG0525 569 VEGYRNFLNKLWNATRFVLMNLDD-LGPDDL-DLLALSLADRWILSRLNETVKEVTEALDNYRFDEAARALYEFIWNDFC 646 (877)
T ss_pred HHHHHHHHHHHHhHHHHHHhcccc-cCcccc-cccccchHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhHHHHH
Confidence 999999999999999999998743 332211 112337899999999999999999999999999999999999999999
Q ss_pred HHHHHhhcccccCCCcccHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHhCCCCCCCCCCCCeeeccCCCCCCCCC
Q 001708 863 DVFIEAIKPYFAGDNPAFASERSAAQHVLWVCLETGLRLLHPFMPFVTEELWQRLPQPKGCATKESIMLCEYPSAVEGWT 942 (1022)
Q Consensus 863 ~~Yle~~K~~l~~~~~~~~~~r~~a~~~L~~~L~~~l~LL~PfmPfitEelwq~L~~~~~~~~~~SI~~~~~P~~~~~~~ 942 (1022)
|+|||++|++++++ +. .+++++.||+++|+.+++||||||||+||||||+|+.. +|||+++||.+++.+.
T Consensus 647 D~YlEl~K~~l~~~-~~---~~~~a~~tL~~vl~~~lrLLhPfmPfiTEei~q~l~~~------~si~~~~~P~~~~~~~ 716 (877)
T COG0525 647 DWYLELAKPRLYGG-EE---EKRAARATLYYVLDTLLRLLHPFMPFITEEIWQKLPGT------ESIHLASWPEVDEELI 716 (877)
T ss_pred HHHHHHhhhhhcCc-HH---HHHHHHHHHHHHHHHHHHHhCCCCccchHHHHHhcCCC------CeEEeccCCCcchhhc
Confidence 99999999999987 44 67799999999999999999999999999999999862 6999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhccCCCC--CcceEEEEecCchhHHHHHHHHHHHHHhhccCcEEEecCCC-CCCCC
Q 001708 943 DERAEFEMDLVESTVRCIRSLRAEVLGKQKN--ERLPAIAFCQTKGVSEIIRSHELEIVTLSTSSSLKALSFGL-LPLKI 1019 (1022)
Q Consensus 943 ~~~~e~~~~~v~~iv~~iRslr~~~~~k~i~--~~~~v~i~~~~~~~~~~l~~~~~~I~~L~~v~~v~i~~~~~-~p~~~ 1019 (1022)
|+.++..++.+.+++.+||++|+++ |++ .+.++++... .+..+.++.....|..+++++++++..++. .+.+|
T Consensus 717 d~~a~~~~~~l~~ii~~iR~~r~e~---~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~i~~~~~~~~~~~~~ 792 (877)
T COG0525 717 DEEAEKEFELLKEIISAIRNLRAEM---NLSPSAPLKVVLVGS-EELEDRLEANEDDIKGLANLEELEILSPDPEEPPVE 792 (877)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHc---CCCCCCceeEEEecc-HhHHHHHHHHHHHHHHhcCcceeeecccCccccchh
Confidence 9999999999999999999999999 884 4455555554 556677888999999999999999986433 34444
Q ss_pred c
Q 001708 1020 V 1020 (1022)
Q Consensus 1020 ~ 1020 (1022)
+
T Consensus 793 ~ 793 (877)
T COG0525 793 V 793 (877)
T ss_pred H
Confidence 3
No 4
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=100.00 E-value=4.1e-200 Score=1879.25 Aligned_cols=870 Identities=58% Similarity=0.992 Sum_probs=800.7
Q ss_pred ccccchhhhcCCCChhHHHHHHHHHHHcCCcccCC----CCCCCcEEEECCCCCCCCCCCcchhHHHHHHHHHHHHHHhC
Q 001708 136 KKRMSKQMAKEYNPSSVEKSWYSWWENSGYFIADN----KSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMS 211 (1022)
Q Consensus 136 k~~~~~~~~~~y~p~~vE~~w~~~W~~~~~f~~~~----~~~k~~f~i~~pPPy~nG~LHiGHal~~~i~Dii~Ry~rm~ 211 (1022)
||+++.++++.|||+++|++||++|+++++|++.. +.++++|+|++|||||||.||||||+|++++|+++||+||+
T Consensus 17 ~~~~~~~~~~~yd~~~iE~~~~~~W~~~~~f~~~~~~~~~~~~~~f~i~~ppP~~~G~lHiGHa~~~~~~D~~~Ry~rm~ 96 (995)
T PTZ00419 17 KKRNISSMAASYDPKEVESGWYEWWEKSGFFKPAEDAKSLNSGKKFVIVLPPPNVTGYLHIGHALTGAIQDSLIRYHRMK 96 (995)
T ss_pred hhhchhhcCCCCCHHHHHHHHHHHHHHCCCcccCccccccCCCCeEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHhc
Confidence 34577888999999999999999999999999852 34678999999999999999999999999999999999999
Q ss_pred CCeeeeeccCCccChhHHHHHHHHHHHHhCCCccccChHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCccccCChhh
Q 001708 212 GYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKR 291 (1022)
Q Consensus 212 G~~Vl~~pG~D~~Glp~q~~vEk~l~~~~~~~~~~~g~e~f~~~~~~~~~~~~~~i~~ql~rlG~s~DW~r~~~T~d~~~ 291 (1022)
||+|+|+|||||||||||.+||+++..+.|++++++||++|+++||+|++++++.|++||++||+|+||+|+|+||||.|
T Consensus 97 G~~v~~~~G~D~~Gl~~~~~vE~~l~~~~~~~~~~~~~e~f~~~~~~w~~~~~~~~~~~~~~lG~~~DW~~~~~T~d~~~ 176 (995)
T PTZ00419 97 GDETLWVPGTDHAGIATQVVVEKKLMKEENKTRHDLGREEFLKKVWEWKDKHGNNICNQLRRLGSSLDWSREVFTMDEQR 176 (995)
T ss_pred CCcccCCCCCCCCchhhHHHHHHHHHHhcCCChHHcCHHHHHHHHHHHHHHHHHHHHHHHHHhCceeeCCCCcCcCCHHH
Confidence 99999999999999999999999998888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCcEEEcceeeeecCCCCccccccccccccCCCceEEeecCccccccceeeEeEeeecCCCcc-eEE
Q 001708 292 SKAVTEAFVRLYKEGLIYRDLRLVNWDCVLRTAISDIEVDYVDIPKREMRNVPGYEKQVEFGVLTSFAYPLEGGLG-EIV 370 (1022)
Q Consensus 292 ~~~v~~~F~~L~ekGlIyr~~~~V~W~p~~~TaLsd~EVe~~~~~~~t~~~vp~y~~~~e~g~l~~~~y~l~~~~~-~l~ 370 (1022)
+++|+++|++||++|||||+.++|||||.|+|+|||+||+|++..+++++++|+|...+++|.+++++|++.+++. +|+
T Consensus 177 ~~~v~~~F~~l~~~Gliyr~~~~V~wcp~~~Talsd~EVe~~~~~~~~~~~~~~~~~~~~~g~l~~i~f~l~~~~~~~l~ 256 (995)
T PTZ00419 177 SKAVKEAFVRLYEDGLIYRDTRLVNWCCYLKTAISDIEVEFEEIEKPTKITIPGYDKKVEVGVLWHFAYPLEDSGQEEIV 256 (995)
T ss_pred HHHHHHHHHHHHHCCCEEecceeeecCCCCCCCCchhhcccccccccceeeccccccccccceeEEEEEeecCCCCcEEE
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999987665 999
Q ss_pred EeeccccccccCcEEEEcCCccccccccCCeeecCC-CCCccceEeCC-ccccCCCCCCceecCCCCCcchHHHHHHcCC
Q 001708 371 VATTRVETMLGDTAIAIHPEDARYSHLHGKFAIHPF-NGRKIPIICDA-ILVDPKFGTGAVKITPAHDPNDFDVGKRHNL 448 (1022)
Q Consensus 371 v~TTrPeTl~g~~avaV~P~d~ry~~L~G~~~~~P~-~~~~~pIi~~~-~~V~~~~GTG~V~~~PaH~~~Dy~~~~~~~L 448 (1022)
|||||||||+||+||||||+|+||++|+|++|.||+ .++.+|||+|+ + |++++|||+||+|||||++||++|++|||
T Consensus 257 vaTTrPeTl~g~~avav~P~d~~y~~l~G~~~~~Pl~~~~~ipii~~~~~-V~~~~GTG~V~~~Pahd~~D~~~~~~~~L 335 (995)
T PTZ00419 257 VATTRIETMLGDVAVAVHPKDERYKKLHGKELIHPFIPDRKIPIIADDEL-VDMEFGTGAVKITPAHDPNDYEIAKRHNL 335 (995)
T ss_pred EEeCCcchhhhCeEEEECCCCcHHHHhcCCEEECCccCCCEEEEEeCCcc-cCCCcCCCCeEeCCCCChHHHHHHHHcCC
Confidence 999999999999999999999999999999999999 89999999999 7 99999999999999999999999999999
Q ss_pred ceeeeeCCCCccccCCCCCCCCCChhhHHHHHHHHHHHcCCccccccccccccccccCCCceecccccccceechHHHHH
Q 001708 449 EFINIFTDDGKINSNGGLEFEGMPRFKAREAVNEALKKKGLYRGAKDNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAME 528 (1022)
Q Consensus 449 ~~i~iid~~G~~~e~~g~~f~G~~~~~ar~~vi~~L~~~gll~~~~~~~~~~p~c~Rs~~~i~~~~~~QWFi~~~~l~~~ 528 (1022)
+++++||++|+|++++| +|.|+.+++||+.|++.|+++|++++.+++.|+||+|||||+||++++++||||+|++++++
T Consensus 336 ~~~~~i~~~G~~~~~~~-~~~Gl~~~~ar~~ii~~L~~~g~l~~~~~~~~~~p~~~R~~~~ie~~~~~QWFi~~~~~~~~ 414 (995)
T PTZ00419 336 PFINIFTLDGKINENGG-EFAGMHRFDCRRKIEEELKEMGLLRDKVPNPMRLPRCSRSGDIVEPMLIPQWYVNCKDMAKR 414 (995)
T ss_pred CeeeeeCCCceEcCCCc-ccCCCCHHHHHHHHHHHHHhcCCEEeeEEeecCCCEeCCCCCEEEEEecCeeeEecHHHHHH
Confidence 99999999999999999 89999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhccCCCceEEeccccHHHHHHHHhhccCccceeccCCCCccCcceeccCchhhhccCCCCcceEEecCHHHHHHH
Q 001708 529 ALYAVMDDDKKKLELIPRQYTAEWRRWLEAIRDWCVSRQLWWGHQIPAWYVTLEDDELKELGSYNDHWIVARDEKEALAV 608 (1022)
Q Consensus 529 al~~v~~~~~~~i~~~P~~~~~~~~~wl~~l~DWcISRQ~~WG~pIP~~~~~~~~~~~~~~~~~~~~w~~~~~~~ea~~~ 608 (1022)
+++++ ++++++|+|+.+++++.+||+|++|||||||||||||||+|||..|+.. ....+++.|+++.+.+++...
T Consensus 415 al~~v---~~~~i~~~P~~~~~~~~~wl~~l~DWcISRQr~WG~pIP~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 489 (995)
T PTZ00419 415 AVEAV---RNGELKIIPSSHENVWYHWLENIQDWCISRQLWWGHRIPAYRVISKGPE--TDPSDEEPWVVARSEEEALEK 489 (995)
T ss_pred HHHHh---hcCCeEEEChHHHHHHHHHHhccccceeeeecccCceeeEEEeCCCCcc--ccCCCCceEEEcCCHHHHHhh
Confidence 99999 8889999999999999999999999999999999999999999877521 011134589988888777655
Q ss_pred Hhhhc--CCCCcccccCCCcEEEEeccCccccccccCCCCChhhhhcCCcCcccccccccchHHHHHHHHHhhhcCCCCc
Q 001708 609 ANKKF--SGKKFEMCQDPDVLDTWFSSGLFPLSVLGWPDDTDDLKAFYPTSVLETGHDILFFWVARMVMLGIKLGGEVPF 686 (1022)
Q Consensus 609 ~~~~~--~~~~~~~~~d~DvlDtWFdSgl~p~s~lg~p~~~~d~~~~~P~dl~~~G~Dil~fW~a~m~~~~~~l~~~~Pf 686 (1022)
+...+ +.++..++|++||||||||||+||++++|||+++.+|++|||+|++++|+||+||||+||+|+|+.++|++||
T Consensus 490 ~~~~~~~~~~~~~~~~~~DVlDtWFdS~l~p~~~~g~p~~~~~~~~~~P~d~~~~G~Dii~~W~arm~~~~~~~~~~~Pf 569 (995)
T PTZ00419 490 AKKKFGLSEEDFELEQDEDVLDTWFSSGLFPFSTLGWPDQTDDLQRFFPTSLLETGSDILFFWVARMVMMSLHLTDKLPF 569 (995)
T ss_pred hccccCCccccCCeEECCceEEEEEeCCHHHHHHhCCCCChHHHhhcCCCcEEEechhHHhHHHHHHHHHHHHhcCCCCh
Confidence 43332 2234579999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred eEEEeccceeCCCCccceecCCcccCcchhhccccchhHHHhhhcCCCChHHHHHHHhcccCCCCCCCCCCCchHHHHHH
Q 001708 687 TKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFAL 766 (1022)
Q Consensus 687 k~V~~Hg~v~D~~GrKMSKSlGNvIdP~dvI~g~~l~~l~~~l~~~nl~~~e~~~a~~~~~~~~~~~i~~~GaDaLR~~L 766 (1022)
++|++||+|+|.+|+|||||+||||||.++|+|+++++|+.++..||++++|+++|.++|+++||+|||+||||||||||
T Consensus 570 k~v~~HG~v~d~~G~KMSKSlGNvIdP~~ii~~~~~~~l~~~~~~~~~~~~e~~~~~~~~~~~f~~gi~~yGaDalR~~l 649 (995)
T PTZ00419 570 KTVFLHAMVRDSQGEKMSKSKGNVIDPLEVIEGISLQDLNQKLYEGNLPEKEIKRAIELQKKEFPNGIPECGTDALRFGL 649 (995)
T ss_pred HHHhccceEECCCCCCcccCCCCcCChHHHhcccchhhHHHhhhccccchhhhhhHhhhhhccCCCCCcccCcHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhccCCCcccccchhhhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCC-----CCCCCCChhhHHHHHHHHHHHHHHHhhh
Q 001708 767 VSYTAQSDKINLDIQRVVGYRQWCNKLWNAVRFSMSKLGEGFVPPLK-----LHPHNLPFSCKWILSVLNKAISRTASSL 841 (1022)
Q Consensus 767 ~~~~~~~~Dinf~~~~~~~~r~f~nkl~N~~rf~l~~l~~~~~p~~~-----~~~~~~~~~D~wil~~L~~~~~~v~~a~ 841 (1022)
+++++.++|++|+.+++.++++|||||||++||+++++.+...+... .....+..+|+||+++|+.+++.++++|
T Consensus 650 ~~~~~~~~Di~~~~~~v~~~~~f~nklwN~~rf~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~wIls~L~~~i~~v~~~~ 729 (995)
T PTZ00419 650 LAYTQQGRNINLDINRVVGYRHFCNKLWNAVKFALMKLLKDFNLPNSTLFKPNNVESLPWEDKWILHRLNVAIKEVTEGF 729 (995)
T ss_pred HhcCCCCCCccccHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999887642211110 0012456789999999999999999999
Q ss_pred hcCCHHHHHHHHHHHHHhhhhHHHHHhhcccccCC-CcccHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHhCCCC
Q 001708 842 NSYEFSDAASTVYSWWQYQFCDVFIEAIKPYFAGD-NPAFASERSAAQHVLWVCLETGLRLLHPFMPFVTEELWQRLPQP 920 (1022)
Q Consensus 842 e~~~f~~a~~~i~~f~~~~l~~~Yle~~K~~l~~~-~~~~~~~r~~a~~~L~~~L~~~l~LL~PfmPfitEelwq~L~~~ 920 (1022)
++|+|+.|++.+++|+|+++||+||+.+|+|++.. +.. .+++++.+|+.+|+.+++||||||||+|||||++|+..
T Consensus 730 e~y~f~~A~~~i~~F~~~~~~n~Yie~~K~~l~~~~~~~---~~~~~~~~L~~vL~~~l~LL~PfmPfitEElw~~L~~~ 806 (995)
T PTZ00419 730 KEYDFSEATQATYNFWLYELCDVYLELIKPRLSKQSDGE---RKQHAQDVLHTVLDIGLRLLHPMMPFITEELYQRLPNY 806 (995)
T ss_pred HccCHHHHHHHHHHHHHHhhHHHHHHHhhhhhhcCCCcH---HHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhhcc
Confidence 99999999999999999999999999999998432 222 46789999999999999999999999999999999752
Q ss_pred CCCCCCCCeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCC--CcceEEEEecCchhHHHHHHHHHHH
Q 001708 921 KGCATKESIMLCEYPSAVEGWTDERAEFEMDLVESTVRCIRSLRAEVLGKQKN--ERLPAIAFCQTKGVSEIIRSHELEI 998 (1022)
Q Consensus 921 ~~~~~~~SI~~~~~P~~~~~~~~~~~e~~~~~v~~iv~~iRslr~~~~~k~i~--~~~~v~i~~~~~~~~~~l~~~~~~I 998 (1022)
. ...+||++++||.+++.|.|++++..|+.+++++..||++|+++ +++ .+..+++.+.+++..+.++.+...|
T Consensus 807 ~--~~~~si~~~~~P~~~~~~~d~~~e~~~~~~~~ii~~iR~~r~~~---~i~~~~~l~~~i~~~~~~~~~~~~~~~~~i 881 (995)
T PTZ00419 807 L--RKSESISIAKYPQPNPGWNNEALDEEMKIIMSIVKSIRSLIATL---GIPNKTKPDCYVTAKDAELIELIESAENLI 881 (995)
T ss_pred C--CCCCeeeccCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHc---CCCCCCceeEEEEeCCHHHHHHHHHHHHHH
Confidence 1 12369999999999888999999999999999999999999999 884 4445666666666678889999999
Q ss_pred HHhhccCcEEEecC---CC-CCCCCc
Q 001708 999 VTLSTSSSLKALSF---GL-LPLKIV 1020 (1022)
Q Consensus 999 ~~L~~v~~v~i~~~---~~-~p~~~~ 1020 (1022)
+.|+++++|++..+ .. .|.+|+
T Consensus 882 ~~l~~~~~v~~~~~~~~~~~~~~~~~ 907 (995)
T PTZ00419 882 STLAKIGSVSVIPPIEEEAEVPKGCG 907 (995)
T ss_pred HHhcCCCeeEEeccccccccCcccce
Confidence 99999999998722 22 577775
No 5
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=7e-188 Score=1749.59 Aligned_cols=785 Identities=51% Similarity=0.908 Sum_probs=723.3
Q ss_pred hhhcCCCChhHHHHHHHHHHHcCCcccCCCCCCCcEEEECCCCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeeeeeccC
Q 001708 142 QMAKEYNPSSVEKSWYSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGM 221 (1022)
Q Consensus 142 ~~~~~y~p~~vE~~w~~~W~~~~~f~~~~~~~k~~f~i~~pPPy~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG~ 221 (1022)
+|++.|||+++|++||++|+++|+|+++.+ .+++|+|++|||||||.||||||+|++++|+++||+||+||+|+|+|||
T Consensus 4 ~~~~~y~~~~~E~~~~~~W~~~~~f~~~~~-~~~~f~i~~ppP~~~G~lHiGHa~~~~~~D~~~Ry~rm~G~~vl~~~G~ 82 (874)
T PRK05729 4 ELPKTYDPKEVEAKWYQKWEEKGYFKPDDN-SKKPFSIVIPPPNVTGSLHMGHALNNTLQDILIRYKRMQGYNTLWLPGT 82 (874)
T ss_pred cCCCCCCHHHHHHHHHHHHHHCCCcccCcC-CCCCEEEecCCCCCCCcchHHHHHHHHHHHHHHHHHHhCCCcccCCCCC
Confidence 467899999999999999999999999765 3456999999999999999999999999999999999999999999999
Q ss_pred CccChhHHHHHHHHHHHHhCCCccccChHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHH
Q 001708 222 DHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVR 301 (1022)
Q Consensus 222 D~~Glp~q~~vEk~l~~~~~~~~~~~g~e~f~~~~~~~~~~~~~~i~~ql~rlG~s~DW~r~~~T~d~~~~~~v~~~F~~ 301 (1022)
||||||||.+||+++.+ +|++++++||++|+++||+|++++++.|++||++||+|+||+|+|+|||+.|+++|+++|++
T Consensus 83 D~~Gi~~e~~ve~~l~~-~g~~~~~~~re~f~~~~~~w~~~~~~~~~~~~~~lG~s~Dw~r~~~T~d~~~~~~v~~~F~~ 161 (874)
T PRK05729 83 DHAGIATQMVVERQLAA-EGKSRHDLGREKFLEKVWEWKEESGGTITNQLRRLGASCDWSRERFTMDEGLSKAVREVFVR 161 (874)
T ss_pred CccchhhHHHHHHHHHh-cCCChHHCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcceecCCCcccCCHHHHHHHHHHHHH
Confidence 99999999999998854 59999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCcEEEcceeeeecCCCCccccccccccccCCCceEEeecCccccccceeeEeEeeecCCCcceEEEeecccccccc
Q 001708 302 LYKEGLIYRDLRLVNWDCVLRTAISDIEVDYVDIPKREMRNVPGYEKQVEFGVLTSFAYPLEGGLGEIVVATTRVETMLG 381 (1022)
Q Consensus 302 L~ekGlIyr~~~~V~W~p~~~TaLsd~EVe~~~~~~~t~~~vp~y~~~~e~g~l~~~~y~l~~~~~~l~v~TTrPeTl~g 381 (1022)
||++|||||+.++|||||.|+|+|||+||+|++.. |.+++++|++.+++.+|+|||||||||+|
T Consensus 162 L~~~GlIyr~~~~v~wcp~~~talsd~EV~~~~~~----------------~~~~~i~f~~~~~~~~l~vaTtrPeTl~~ 225 (874)
T PRK05729 162 LYEKGLIYRGKRLVNWDPKLQTALSDLEVEYKEVK----------------GKLWHIRYPLADGSDYLVVATTRPETMLG 225 (874)
T ss_pred HHHCCCEeecCcccccCCCCCCcchhhhccccccc----------------ceEEEEEEEecCCCcEEEEEeCCcchhhc
Confidence 99999999999999999999999999999998865 56788999999888999999999999999
Q ss_pred CcEEEEcCCccccccccCCeeecCCCCCccceEeCCccccCCCCCCceecCCCCCcchHHHHHHcCCceeeeeCCCCccc
Q 001708 382 DTAIAIHPEDARYSHLHGKFAIHPFNGRKIPIICDAILVDPKFGTGAVKITPAHDPNDFDVGKRHNLEFINIFTDDGKIN 461 (1022)
Q Consensus 382 ~~avaV~P~d~ry~~L~G~~~~~P~~~~~~pIi~~~~~V~~~~GTG~V~~~PaH~~~Dy~~~~~~~L~~i~iid~~G~~~ 461 (1022)
|+||||||+|+||++|+|++++||++++.+|||+|++ |++++|||+||+|||||++||++|++|||+++++||++|+|+
T Consensus 226 ~~avaV~P~d~ry~~l~g~~~~~P~~~~~ipii~~~~-V~~~~GTG~V~~~Pah~~~D~~~~~~~~l~~~~~i~~~G~~~ 304 (874)
T PRK05729 226 DTAVAVNPEDERYKHLIGKTVILPLVGREIPIIADEY-VDPEFGTGAVKITPAHDPNDFEVGKRHNLPMINIMDEDGTIN 304 (874)
T ss_pred CeeEeECCCccHHHHhcCCEEECCCCCCeeeEecCcc-CCCCCCCcceEecCCCCHHHHHHHHHcCCCcccccCCCCeEc
Confidence 9999999999999999999999999999999999995 999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCChhhHHHHHHHHHHHcCCccccccccccccccccCCCceecccccccceechHHHHHHHHhhhccCCCce
Q 001708 462 SNGGLEFEGMPRFKAREAVNEALKKKGLYRGAKDNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKL 541 (1022)
Q Consensus 462 e~~g~~f~G~~~~~ar~~vi~~L~~~gll~~~~~~~~~~p~c~Rs~~~i~~~~~~QWFi~~~~l~~~al~~v~~~~~~~i 541 (1022)
+++| +|.||+|++||++|++.|++.|++++.+++.|++|+|||||++||+++++||||+|+++++++++++ +++++
T Consensus 305 ~~~~-~~~G~~~~~ar~~i~~~L~~~g~l~~~~~~~~~~p~~~R~~~~i~~~~~~QWFi~~~~~~~~~~~~v---~~~~i 380 (874)
T PRK05729 305 ENPG-EYQGLDRFEARKAIVADLEELGLLVKIEPHTHSVGHSDRSGVVIEPYLSDQWFVKMKPLAKPALEAV---ENGEI 380 (874)
T ss_pred CCCc-ccCCCCHHHHHHHHHHHHHhCCCeeeeEEeeccCCeeCCCCceEEEEecCcceEehHHHHHHHHHHH---hcCCc
Confidence 9999 9999999999999999999999999999999999999999999999999999999999999999999 88899
Q ss_pred EEeccccHHHHHHHHhhccCccceeccCCCCccCcceeccCchhhhccCCCCcceEEecCHHHHHHHHhhhcCCCCcccc
Q 001708 542 ELIPRQYTAEWRRWLEAIRDWCVSRQLWWGHQIPAWYVTLEDDELKELGSYNDHWIVARDEKEALAVANKKFSGKKFEMC 621 (1022)
Q Consensus 542 ~~~P~~~~~~~~~wl~~l~DWcISRQ~~WG~pIP~~~~~~~~~~~~~~~~~~~~w~~~~~~~ea~~~~~~~~~~~~~~~~ 621 (1022)
+|+|+.+++++.+||+|++|||||||||||||||+|||.. +.+.++.+..++ +. ...++
T Consensus 381 ~~~P~~~~~~~~~wl~~l~DWcISRq~~WG~pIP~~~~~~------------~~~~v~~~~~~~-------~~--~~~~~ 439 (874)
T PRK05729 381 KFVPERWEKTYFHWMENIQDWCISRQLWWGHRIPAWYDED------------GEVYVGREEPEA-------RE--KALLT 439 (874)
T ss_pred EEEChHHHHHHHHHHhcCccceeeeecccCCcccEEEeCC------------CcEEeCCccccc-------cc--ccCeE
Confidence 9999999999999999999999999999999999999853 124444332111 11 12589
Q ss_pred cCCCcEEEEeccCccccccccCCCCChhhhhcCCcCcccccccccchHHHHHHHHHhhhcCCCCceEEEeccceeCCCCc
Q 001708 622 QDPDVLDTWFSSGLFPLSVLGWPDDTDDLKAFYPTSVLETGHDILFFWVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGR 701 (1022)
Q Consensus 622 ~d~DvlDtWFdSgl~p~s~lg~p~~~~d~~~~~P~dl~~~G~Dil~fW~a~m~~~~~~l~~~~Pfk~V~~Hg~v~D~~Gr 701 (1022)
||+||||||||||+||++++|||+++.+|++|||+|++++|+||+|||++||+|+|+.++|++||++|++||+|+|.+|+
T Consensus 440 ~~~DvlDtWfsS~l~~~~~lgwp~~~~~~~~~~P~d~~~~G~Dii~~W~a~~~~~~~~~~~~~Pfk~v~~hG~v~d~~G~ 519 (874)
T PRK05729 440 QDEDVLDTWFSSALWPFSTLGWPEKTEDLKRFYPTSVLVTGFDIIFFWVARMIMMGLHFTGQVPFKDVYIHGLVRDEQGR 519 (874)
T ss_pred eCCceecceecCCccHHHHhCCCCCcHHHHhcCCcccccccccccchHHHHHHHHHHHhcCCCchhheEEeeeEECCCCC
Confidence 99999999999999999999999988899999999999999999999999999999999999999999999999999999
Q ss_pred cceecCCcccCcchhhccccchhHHHhhhcCCCChHHHHHHHhcccCCCCCCCCCCCchHHHHHHHhccCCCcccccchh
Q 001708 702 KMSKSLGNVIDPLEVINGISLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLDIQ 781 (1022)
Q Consensus 702 KMSKSlGNvIdP~dvI~g~~l~~l~~~l~~~nl~~~e~~~a~~~~~~~~~~~i~~~GaDaLR~~L~~~~~~~~Dinf~~~ 781 (1022)
|||||+||||||.|+|+ +||+|+|||||++.++.++|++|+.+
T Consensus 520 KMSKSlGNvIdP~dvi~-------------------------------------~yGaDalR~~ll~~~~~~~Di~fs~~ 562 (874)
T PRK05729 520 KMSKSKGNVIDPLDLID-------------------------------------KYGADALRFTLAALASPGRDIRFDEE 562 (874)
T ss_pred CcccCCCCCCCHHHHHH-------------------------------------HhChHHHHHHHHhCCCCCCCceeCHH
Confidence 99999999999999999 89999999999999889999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHhhh
Q 001708 782 RVVGYRQWCNKLWNAVRFSMSKLGEGFVPPLKLHPHNLPFSCKWILSVLNKAISRTASSLNSYEFSDAASTVYSWWQYQF 861 (1022)
Q Consensus 782 ~~~~~r~f~nkl~N~~rf~l~~l~~~~~p~~~~~~~~~~~~D~wil~~L~~~~~~v~~a~e~~~f~~a~~~i~~f~~~~l 861 (1022)
.+.++++|+|||||++||+++++.+ +.+........++..|+||+++|+.+++.++++|++|+|+.|++.+++|+++++
T Consensus 563 ~l~~~~~~~nkl~N~~Rf~~~~~~~-~~~~~~~~~~~~~~~D~wil~~l~~~~~~v~~~~e~y~f~~a~~~l~~f~~~~~ 641 (874)
T PRK05729 563 RVEGYRNFANKLWNASRFVLMNLEG-ADVGELPDPEELSLADRWILSRLNRTVAEVTEALDKYRFDEAARALYEFIWNEF 641 (874)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccc-CCcccccccccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999887654 222111112245788999999999999999999999999999999999999999
Q ss_pred hHHHHHhhcccccCCCcccHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHhCCCCCCCCCCCCeeeccCCCCCCCC
Q 001708 862 CDVFIEAIKPYFAGDNPAFASERSAAQHVLWVCLETGLRLLHPFMPFVTEELWQRLPQPKGCATKESIMLCEYPSAVEGW 941 (1022)
Q Consensus 862 ~~~Yle~~K~~l~~~~~~~~~~r~~a~~~L~~~L~~~l~LL~PfmPfitEelwq~L~~~~~~~~~~SI~~~~~P~~~~~~ 941 (1022)
||+||+.+|+|++ + . .+++++.+|+.+|+.+++||||||||+||||||+|+.. ...+||++++||++++.+
T Consensus 642 ~~~Yle~~k~~l~-~--~---~~~~~~~~l~~~l~~~~~lL~Pf~PfitEelw~~l~~~---~~~~si~~~~~P~~~~~~ 712 (874)
T PRK05729 642 CDWYLELAKPVLQ-E--A---AKRATRATLAYVLEQILRLLHPFMPFITEELWQKLAPL---GIEESIMLAPWPEADEAI 712 (874)
T ss_pred HHHHHHHHHHHhh-h--h---HHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHhcccC---CCCCceeecCCCCCCccc
Confidence 9999999999987 2 2 36688999999999999999999999999999999853 123589999999999888
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhccCCCC--CcceEEEEecCchhHHHHHHHHHHHHHhhccCcEEEecCCC-CCCC
Q 001708 942 TDERAEFEMDLVESTVRCIRSLRAEVLGKQKN--ERLPAIAFCQTKGVSEIIRSHELEIVTLSTSSSLKALSFGL-LPLK 1018 (1022)
Q Consensus 942 ~~~~~e~~~~~v~~iv~~iRslr~~~~~k~i~--~~~~v~i~~~~~~~~~~l~~~~~~I~~L~~v~~v~i~~~~~-~p~~ 1018 (1022)
|+.++..|+.++++++.||++|+++ +++ .+..+++.+.+....+.++.+.+.|+.|+++++|+++...+ .|.|
T Consensus 713 -~~~~~~~~~~~~~ii~~ir~~r~~~---~i~~~~~~~~~i~~~~~~~~~~l~~~~~~i~~l~~~~~v~~~~~~~~~~~~ 788 (874)
T PRK05729 713 -DEAAEAEFEWLKELITAIRNIRAEM---NIPPSKKLPLLLKGADAEDRARLEANEAYIKRLARLESLEILADDEEAPEG 788 (874)
T ss_pred -CHHHHHHHHHHHHHHHHHHHHHHhc---CCCCCCeeeEEEEeCCHHHHHHHHHHHHHHHHHhCcCceEEecCCCcCCcC
Confidence 9999999999999999999999998 884 44456666666666678899999999999999999976544 7888
Q ss_pred Ccc
Q 001708 1019 IVV 1021 (1022)
Q Consensus 1019 ~~~ 1021 (1022)
|+.
T Consensus 789 ~~~ 791 (874)
T PRK05729 789 AAS 791 (874)
T ss_pred ceE
Confidence 863
No 6
>PLN02943 aminoacyl-tRNA ligase
Probab=100.00 E-value=3.3e-183 Score=1708.88 Aligned_cols=780 Identities=46% Similarity=0.834 Sum_probs=713.2
Q ss_pred hhhcCCCChhHHHHHHHHHHHcCCcccCCCCCCCcEEEECCCCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeeeeeccC
Q 001708 142 QMAKEYNPSSVEKSWYSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGM 221 (1022)
Q Consensus 142 ~~~~~y~p~~vE~~w~~~W~~~~~f~~~~~~~k~~f~i~~pPPy~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG~ 221 (1022)
+|++.|||+. |++||++|+++|+|++..+.++++|+|++|||||||.||||||+|++++|+++||+||+||+|+|+|||
T Consensus 56 ~~~~~y~~~~-E~~~~~~W~~~~~f~~~~~~~~~~f~i~~pPP~~tG~lHiGHa~~~~~~D~~~Ry~rm~G~~vl~~~G~ 134 (958)
T PLN02943 56 ETAKSFDFTS-EERIYNWWESQGYFKPNFDRGGDPFVIPMPPPNVTGSLHMGHAMFVTLEDIMVRYNRMKGRPTLWIPGT 134 (958)
T ss_pred ccCCCCChhh-hHHHHHHHHHCCCcccCcccCCCCEEEecCCCCCCCchhHHHHHHHHHHHHHHHHHHhcCCeeecCCCC
Confidence 3678899999 999999999999999987656788999999999999999999999999999999999999999999999
Q ss_pred CccChhHHHHHHHHHHHHhCCCccccChHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHH
Q 001708 222 DHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVR 301 (1022)
Q Consensus 222 D~~Glp~q~~vEk~l~~~~~~~~~~~g~e~f~~~~~~~~~~~~~~i~~ql~rlG~s~DW~r~~~T~d~~~~~~v~~~F~~ 301 (1022)
||||||||.+||+++ +.+|++++++||++|+++||+|++++++.|++||++||+|+||+|+|+||||.|+++|+++|++
T Consensus 135 D~~Gl~~e~~vek~l-~~~~~~~~~~~re~f~~~~~~~~~~~~~~~~~~~~~lG~s~Dw~~~~~T~d~~~~~~v~~~F~~ 213 (958)
T PLN02943 135 DHAGIATQLVVEKML-ASEGIKRTDLGRDEFTKRVWEWKEKYGGTITNQIKRLGASCDWSRERFTLDEQLSRAVVEAFVR 213 (958)
T ss_pred CcccchhHHHHHHHH-HHcCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcceecCCCcccCCHHHHHHHHHHHHH
Confidence 999999999999988 5679999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCcEEEcceeeeecCCCCccccccccccccCCCceEEeecCccccccceeeEeEeeecCCCc-ceEEEeeccccccc
Q 001708 302 LYKEGLIYRDLRLVNWDCVLRTAISDIEVDYVDIPKREMRNVPGYEKQVEFGVLTSFAYPLEGGL-GEIVVATTRVETML 380 (1022)
Q Consensus 302 L~ekGlIyr~~~~V~W~p~~~TaLsd~EVe~~~~~~~t~~~vp~y~~~~e~g~l~~~~y~l~~~~-~~l~v~TTrPeTl~ 380 (1022)
||++|||||+.++|||||.|+|+|||+||+|++.. |.+++++|++.+++ .+|+|||||||||+
T Consensus 214 l~~~Gliyr~~~~V~wcp~~~Tals~~Evey~e~~----------------~~~~~i~f~l~~~~~~~l~vaTTrPeTl~ 277 (958)
T PLN02943 214 LHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEP----------------GTLYYIKYRVAGGSEDFLTIATTRPETLF 277 (958)
T ss_pred HHHCCCEEecCceeccCCCCCCCcCHHHhhccccc----------------ccEEEEEEEEcCCCCCEEEEEeCChhhhh
Confidence 99999999999999999999999999999998865 45788999997654 68999999999999
Q ss_pred cCcEEEEcCCccccccccCCeeecCCC-CCccceEeCCccccCCCCCCceecCCCCCcchHHHHHHcCCceeeeeCCCCc
Q 001708 381 GDTAIAIHPEDARYSHLHGKFAIHPFN-GRKIPIICDAILVDPKFGTGAVKITPAHDPNDFDVGKRHNLEFINIFTDDGK 459 (1022)
Q Consensus 381 g~~avaV~P~d~ry~~L~G~~~~~P~~-~~~~pIi~~~~~V~~~~GTG~V~~~PaH~~~Dy~~~~~~~L~~i~iid~~G~ 459 (1022)
||+||||||+|+||++|+|++++||++ ++.+|||+|++ |+++||||+||+|||||++||++|++|||+++++||++|+
T Consensus 278 ~~~avavnP~d~ry~~l~g~~~~~Pl~~~~~ipii~~~~-V~~~~GTG~V~~~Pahd~~D~~~~~~~~L~~~~~id~~G~ 356 (958)
T PLN02943 278 GDVAIAVNPEDDRYSKYIGKMAIVPMTYGRHVPIIADRY-VDKDFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGT 356 (958)
T ss_pred cceEEEECCCCHHHHHHcCCEEECCCcCCCeeeEEecCc-ccCCCCCceEEeCCCCChHHHHHHHHcCCCceeeeCCCce
Confidence 999999999999999999999999996 99999999995 9999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCCCChhhHHHHHHHHHHHcCCccccccccccccccccCCCceecccccccceechHHHHHHHHhhhccCCC
Q 001708 460 INSNGGLEFEGMPRFKAREAVNEALKKKGLYRGAKDNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKK 539 (1022)
Q Consensus 460 ~~e~~g~~f~G~~~~~ar~~vi~~L~~~gll~~~~~~~~~~p~c~Rs~~~i~~~~~~QWFi~~~~l~~~al~~v~~~~~~ 539 (1022)
|++++| +.|++||++|++.|+++|++++.+++.|++|+|||||+||++++++||||+|+++++++++++ +++
T Consensus 357 ~~~~~g-----~~~~ear~~iv~~L~~~g~l~~~e~~~~~~p~c~R~~~~Ie~~~~~QWFi~~~~l~~~~l~~v---~~~ 428 (958)
T PLN02943 357 LNEVAG-----LYWFEAREKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALKAV---ENG 428 (958)
T ss_pred eeccCC-----ccHHHHHHHHHHHHHHCCCeeeeeeeecCCCeeCCCCcEeEEEeccceeEEHHHHHHHHHHHH---hcC
Confidence 997665 449999999999999999999999999999999999999999999999999999999999999 778
Q ss_pred ceEEeccccHHHHHHHHhhccCccceeccCCCCccCcceec--cCchhhhccCCCCcceEEecCHHHHHHHHhhhcCCCC
Q 001708 540 KLELIPRQYTAEWRRWLEAIRDWCVSRQLWWGHQIPAWYVT--LEDDELKELGSYNDHWIVARDEKEALAVANKKFSGKK 617 (1022)
Q Consensus 540 ~i~~~P~~~~~~~~~wl~~l~DWcISRQ~~WG~pIP~~~~~--~~~~~~~~~~~~~~~w~~~~~~~ea~~~~~~~~~~~~ 617 (1022)
+++|+|+.+++++.+||+|++|||||||||||||||+|||. .|+ ..|+++.+.+++...+..+|+. .
T Consensus 429 ~i~~~P~~~~~~~~~wl~~l~DWcISRQr~WG~pIP~w~~~~~~~~----------~~~~v~~~~~~~~~~~~~~~g~-~ 497 (958)
T PLN02943 429 ELTIIPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKDCE----------EDYIVARSAEEALEKAREKYGK-D 497 (958)
T ss_pred CcEEEChHHHHHHHHHHhcCccceEEEecCCCCccCceeccccCCC----------ceEEecCcHHHHHHHhhhhcCC-c
Confidence 99999999999999999999999999999999999999984 221 2588888888887766655543 3
Q ss_pred cccccCCCcEEEEeccCccccccccCCCC-ChhhhhcCCcCcccccccccchHHHHHHHHHhhhcCCCCceEEEecccee
Q 001708 618 FEMCQDPDVLDTWFSSGLFPLSVLGWPDD-TDDLKAFYPTSVLETGHDILFFWVARMVMLGIKLGGEVPFTKVYLHPMIR 696 (1022)
Q Consensus 618 ~~~~~d~DvlDtWFdSgl~p~s~lg~p~~-~~d~~~~~P~dl~~~G~Dil~fW~a~m~~~~~~l~~~~Pfk~V~~Hg~v~ 696 (1022)
..++|++||||||||||+||++++|||+. +++|++|||+|++++|+||+|||+++|+|+|+.++|+.||++|++||+++
T Consensus 498 ~~~~~~~DVlDtWFdS~l~p~s~lgwp~~~~~~~~~~yP~dl~~~G~Dii~fW~a~m~~~~~~~~~~~Pf~~v~~hg~v~ 577 (958)
T PLN02943 498 VEIYQDPDVLDTWFSSALWPFSTLGWPDVSAEDFKKFYPTTVLETGHDILFFWVARMVMMGIEFTGTVPFSYVYLHGLIR 577 (958)
T ss_pred hheeecCceEEEEEcCccchHHhcCCCccChHHHhccCCCeEEEEeehHHHHHHHHHHHhhhhhcCCCChheEEEeccEE
Confidence 45889999999999999999999999984 57899999999999999999999999999999999999999999999999
Q ss_pred CCCCccceecCCcccCcchhhccccchhHHHhhhcCCCChHHHHHHHhcccCCCCCCCCCCCchHHHHHHHhccCCCccc
Q 001708 697 DAHGRKMSKSLGNVIDPLEVINGISLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKI 776 (1022)
Q Consensus 697 D~~GrKMSKSlGNvIdP~dvI~g~~l~~l~~~l~~~nl~~~e~~~a~~~~~~~~~~~i~~~GaDaLR~~L~~~~~~~~Di 776 (1022)
|.+|+|||||+||||+|.++|+ +||+|++||||++.. .++|+
T Consensus 578 ~~~G~KMSKS~GN~i~p~~~i~-------------------------------------~ygaDalR~~l~~~~-~~~d~ 619 (958)
T PLN02943 578 DSQGRKMSKTLGNVIDPLDTIK-------------------------------------EFGTDALRFTLALGT-AGQDL 619 (958)
T ss_pred CCCCCcccCcCCCCCCHHHHHH-------------------------------------hcCChHHHHHHHhCC-CCCCc
Confidence 9999999999999999999999 899999999999755 58999
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHHHhhcCCC-------------CCCCCCCCCCCCChhhHHHHHHHHHHHHHHHhhhhc
Q 001708 777 NLDIQRVVGYRQWCNKLWNAVRFSMSKLGEG-------------FVPPLKLHPHNLPFSCKWILSVLNKAISRTASSLNS 843 (1022)
Q Consensus 777 nf~~~~~~~~r~f~nkl~N~~rf~l~~l~~~-------------~~p~~~~~~~~~~~~D~wil~~L~~~~~~v~~a~e~ 843 (1022)
+|+.+.+.+.++|+|||||++||+++++.+. |.+.. ....++..|+||+++|+.++++++++|++
T Consensus 620 ~fs~~~l~~~~~~~~kl~N~~rf~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~D~wilskl~~~i~~v~~~~e~ 697 (958)
T PLN02943 620 NLSTERLTSNKAFTNKLWNAGKFVLQNLPSQSDTSAWEHILACKFDKEE--SLLSLPLPECWVVSKLHELIDSVTTSYDK 697 (958)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccCCccc--cccccCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999876431 22110 11235688999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhhhhHHHHHhhcccccCCCcccHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHhCCCCCCC
Q 001708 844 YEFSDAASTVYSWWQYQFCDVFIEAIKPYFAGDNPAFASERSAAQHVLWVCLETGLRLLHPFMPFVTEELWQRLPQPKGC 923 (1022)
Q Consensus 844 ~~f~~a~~~i~~f~~~~l~~~Yle~~K~~l~~~~~~~~~~r~~a~~~L~~~L~~~l~LL~PfmPfitEelwq~L~~~~~~ 923 (1022)
|+|+.|++.+|+|+|+++||+|||.+||+++.++.. ..+++++.+|+.+++.+++||||||||+||||||+|+..
T Consensus 698 y~f~~A~~~i~~f~~~~~~d~YiE~~Kprl~~~~~~--~~~~~a~~vL~~vl~~ll~LL~PfmPfitEELwq~L~~~--- 772 (958)
T PLN02943 698 YFFGDVGREIYDFFWSDFADWYIEASKTRLYHSGDN--SALSRAQAVLLYVFENILKLLHPFMPFVTEELWQALPYR--- 772 (958)
T ss_pred cChhHHHHHHHHHHHHHHHHHHHHhccHhhccCCch--HHHHHHHHHHHHHHHHHHHHHhCcchhHHHHHHHHcCCC---
Confidence 999999999999999999999999999998865321 146778999999999999999999999999999999742
Q ss_pred CCCCCeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhccCCC--CCcceEEEEecCchhHHHHHHHHHHHHHh
Q 001708 924 ATKESIMLCEYPSAVEGWTDERAEFEMDLVESTVRCIRSLRAEVLGKQK--NERLPAIAFCQTKGVSEIIRSHELEIVTL 1001 (1022)
Q Consensus 924 ~~~~SI~~~~~P~~~~~~~~~~~e~~~~~v~~iv~~iRslr~~~~~k~i--~~~~~v~i~~~~~~~~~~l~~~~~~I~~L 1001 (1022)
.+||++++||+.+ .+.|+.++..++.+++++++||++|+++ ++ +.+..+++.+.+ +..+.++.+...|+.|
T Consensus 773 --~~si~~~~wP~~~-~~~d~~~~~~~~~v~~ii~~iR~~r~~~---~i~~~~~~~~~i~~~~-~~~~~~~~~~~~i~~l 845 (958)
T PLN02943 773 --KEALIVSPWPQTS-LPKDLKSIKRFENLQSLTRAIRNARAEY---SVEPAKRISASIVASA-EVIEYISKEKEVLALL 845 (958)
T ss_pred --CCceeecCCCCCc-ccCCHHHHHHHHHHHHHHHHHHHHHHHc---CCCCCCcccEEEecCh-hHHHHHHHHHHHHHHH
Confidence 3599999999986 5778889999999999999999999998 77 455567776655 4467788899999999
Q ss_pred hccC--cEEEec
Q 001708 1002 STSS--SLKALS 1011 (1022)
Q Consensus 1002 ~~v~--~v~i~~ 1011 (1022)
++++ ++++..
T Consensus 846 ~~~~~~~~~~~~ 857 (958)
T PLN02943 846 SRLDLQNVHFTD 857 (958)
T ss_pred hcCccccccccc
Confidence 9764 776643
No 7
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.3e-182 Score=1714.00 Aligned_cols=798 Identities=50% Similarity=0.901 Sum_probs=725.1
Q ss_pred chhhhcCCCChhHHHHHHHHHHHcCCcccCC-CCCCCcEEEECCCCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeeeee
Q 001708 140 SKQMAKEYNPSSVEKSWYSWWENSGYFIADN-KSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWV 218 (1022)
Q Consensus 140 ~~~~~~~y~p~~vE~~w~~~W~~~~~f~~~~-~~~k~~f~i~~pPPy~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~ 218 (1022)
...+++.|||..+|.+||++|+++++|++.. +.++++|+|++||||+||.||||||+|++++|+++||+||+||+|+|+
T Consensus 12 ~~~~~~~y~~~~iE~~~~~~W~~~~~f~~~~~~~~~~~f~i~~pPP~~nG~lHiGH~~~~~~~Di~~Ry~rm~G~~vl~~ 91 (1052)
T PRK14900 12 RTELAKGYEHREVEARWYPFWQERGYFHGDEHDRTRPPFSIVLPPPNVTGSLHLGHALTATLQDVLIRWKRMSGFNTLWL 91 (1052)
T ss_pred ccccCCCCCHHHHHHHHHHHHHHCCCccCCcccCCCCCEEEecCCCCCCCcchHHHHHhhHHHHHHHHHHHhcCCcccCC
Confidence 3457789999999999999999999999864 356789999999999999999999999999999999999999999999
Q ss_pred ccCCccChhHHHHHHHHHHHHhCCCccccChHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHH
Q 001708 219 PGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEA 298 (1022)
Q Consensus 219 pG~D~~Glp~q~~vEk~l~~~~~~~~~~~g~e~f~~~~~~~~~~~~~~i~~ql~rlG~s~DW~r~~~T~d~~~~~~v~~~ 298 (1022)
|||||||||||.+||+.+....|++++++||++|+++||+|++++++.|++||++||+|+||+|+|+||||.|+++|+++
T Consensus 92 ~G~D~~Glp~e~~ve~~l~~~~~~~~~~~~~e~f~~~~~~~~~~~~~~~~~~~~~lG~s~Dw~~~~~T~d~~~~~~v~~~ 171 (1052)
T PRK14900 92 PGTDHAGIATQMIVEKELKKTEKKSRHDLGREAFLERVWAWKEQYGSRIGEQHKALGASLDWQRERFTMDEGLSRAVREV 171 (1052)
T ss_pred CCCCccchHHHHHHHHHhhhccCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhchheecCCCcCcCCHHHHHHHHHH
Confidence 99999999999999999877789999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCcEEEcceeeeecCCCCccccccccccccCCCceEEeecCccccccceeeEeEeeecCCCcceEEEeeccccc
Q 001708 299 FVRLYKEGLIYRDLRLVNWDCVLRTAISDIEVDYVDIPKREMRNVPGYEKQVEFGVLTSFAYPLEGGLGEIVVATTRVET 378 (1022)
Q Consensus 299 F~~L~ekGlIyr~~~~V~W~p~~~TaLsd~EVe~~~~~~~t~~~vp~y~~~~e~g~l~~~~y~l~~~~~~l~v~TTrPeT 378 (1022)
|.+||++|||||+.++|+|||.|+|+|||+||+|+++.. |.+++++|++.+++.+|+||||||||
T Consensus 172 F~~L~~~Gliyr~~~~v~wcp~~~T~Lsd~Ev~~~e~~~---------------~~~~~i~f~l~~~~~~l~vaTTrPeT 236 (1052)
T PRK14900 172 FVRLHEEGLIYREKKLINWCPDCRTALSDLEVEHEEAHQ---------------GELWSFAYPLADGSGEIVVATTRPET 236 (1052)
T ss_pred HHHHHHCCCEEeccceeccCCCCCCCccHHHhcccCCCC---------------CeEEEEEEEecCCCcEEEEEECchhh
Confidence 999999999999999999999999999999999986442 56788999998888899999999999
Q ss_pred cccCcEEEEcCCccccccccCCeeecCCCCCccceEeCCccccCCCCCCceecCCCCCcchHHHHHHcCCceeeeeCCCC
Q 001708 379 MLGDTAIAIHPEDARYSHLHGKFAIHPFNGRKIPIICDAILVDPKFGTGAVKITPAHDPNDFDVGKRHNLEFINIFTDDG 458 (1022)
Q Consensus 379 l~g~~avaV~P~d~ry~~L~G~~~~~P~~~~~~pIi~~~~~V~~~~GTG~V~~~PaH~~~Dy~~~~~~~L~~i~iid~~G 458 (1022)
|+||+||||||+|+||++|+|++|.||+.++.+|||.|..+||+++|||+||+|||||++||++|++|||+++++||++|
T Consensus 237 l~~~~avaV~P~~~~y~~L~G~~~~~Pl~~~~ipIi~d~~~vd~~~GTG~V~~~Pahd~~D~~~~~~~~L~~~~~id~~G 316 (1052)
T PRK14900 237 MLGDTAVAVHPLDPRYMALHGKKVRHPITGRTFPIVADAILVDPKFGTGAVKVTPAHDFNDFEVGKRHGLEMITVIGPDG 316 (1052)
T ss_pred hhcceeEEECCCcHHHHHhcCCEEECCCCCCeeEEEecccccCcCCCCCeEEecCCCChhHHHHHHHcCCCccceECCCc
Confidence 99999999999999999999999999999999999977546999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCCCCChhhHHHHHHHHHHHcCCccccccccccccccccCCCceecccccccceechHHHHHHHHhhhccCC
Q 001708 459 KINSNGGLEFEGMPRFKAREAVNEALKKKGLYRGAKDNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDK 538 (1022)
Q Consensus 459 ~~~e~~g~~f~G~~~~~ar~~vi~~L~~~gll~~~~~~~~~~p~c~Rs~~~i~~~~~~QWFi~~~~l~~~al~~v~~~~~ 538 (1022)
+|++++| +|.|+++++||+.|++.|+++|++++.+++.|+||||||||+|||+++++||||+|+++++++++++ ++
T Consensus 317 ~~~~~~~-~~~Gl~~~ear~~Ii~~L~~~g~l~~~~~~~h~~~~c~R~~~~ie~~~s~qWFi~l~~~k~~~~~~v---~~ 392 (1052)
T PRK14900 317 RMTAEAG-PLAGLDRFEARKEVKRLLAEQGLDRGAKPHVLPLGRCQRSATILEPLLSDQWYVRIEPLARPAIEAV---EQ 392 (1052)
T ss_pred EEecCCc-ccCCcCHHHHHHHHHHHHHhCCCeecceeeeccCceeCCCCceEEEEeccceeeehHHHHHHHHHHH---hc
Confidence 9999988 8999999999999999999999999999999999999999999999999999999999999999999 77
Q ss_pred CceEEeccccHHHHHHHHhhccCccceeccCCCCccCcceeccCchhhhccCCCCcceEEecCHHHHHHHHhhhcCCC-C
Q 001708 539 KKLELIPRQYTAEWRRWLEAIRDWCVSRQLWWGHQIPAWYVTLEDDELKELGSYNDHWIVARDEKEALAVANKKFSGK-K 617 (1022)
Q Consensus 539 ~~i~~~P~~~~~~~~~wl~~l~DWcISRQ~~WG~pIP~~~~~~~~~~~~~~~~~~~~w~~~~~~~ea~~~~~~~~~~~-~ 617 (1022)
++++|+|+..++++.+||++++|||||||||||||||+|||.. +.|+++.... ..||.| +
T Consensus 393 ~~~~~~P~~~~~~~~~wl~~l~DW~ISRqr~WG~PIP~w~~~~------------~~~~v~~~~~-------~~~~~~~~ 453 (1052)
T PRK14900 393 GRTRFIPEQWTNTYMAWMRNIHDWCISRQLWWGHQIPAWYCPD------------GHVTVARETP-------EACSTCGK 453 (1052)
T ss_pred CCcEEEChHHHHHHHHHHhcCccceEEeecCCCceeCeEEcCC------------CcEEeccccc-------ccccccCc
Confidence 8899999999999999999999999999999999999999853 2355544321 123322 2
Q ss_pred cccccCCCcEEEEeccCccccccccCCCCChhhhhcCCcCcccccccccchHHHHHHHHHhhhcCCCCceEEEeccceeC
Q 001708 618 FEMCQDPDVLDTWFSSGLFPLSVLGWPDDTDDLKAFYPTSVLETGHDILFFWVARMVMLGIKLGGEVPFTKVYLHPMIRD 697 (1022)
Q Consensus 618 ~~~~~d~DvlDtWFdSgl~p~s~lg~p~~~~d~~~~~P~dl~~~G~Dil~fW~a~m~~~~~~l~~~~Pfk~V~~Hg~v~D 697 (1022)
..++|++||||||||||+||++++|||+++.+|++|||+|++++|+||+|||+++|+++|+.++|.+||++|++||||+|
T Consensus 454 ~~~~~~~dVlDvWFdS~l~y~s~~g~p~~~~~~~~~~P~d~~~~G~Dii~~W~a~~l~~~~~~~~~~Pfk~V~~hG~v~d 533 (1052)
T PRK14900 454 AELRQDEDVLDTWFSSGLWPFSTMGWPEQTDTLRTFYPTSVMETGHDIIFFWVARMMMMGLHFMGEVPFRTVYLHPMVRD 533 (1052)
T ss_pred cceecCCceEEEEEcCChHHHHHHcCCCchHHHHhhCCchhhcccccHHhHHHHHHHHHHHHhcCCCccceeEecccEEC
Confidence 35889999999999999999999999998888999999999999999999999999999999999999999999999999
Q ss_pred CCCccceecCCcccCcchhhccccchhHHHhhhcCCCChHHHHHHHhcccCCCCCCCCCCCchHHHHHHHhccCCCcccc
Q 001708 698 AHGRKMSKSLGNVIDPLEVINGISLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKIN 777 (1022)
Q Consensus 698 ~~GrKMSKSlGNvIdP~dvI~g~~l~~l~~~l~~~nl~~~e~~~a~~~~~~~~~~~i~~~GaDaLR~~L~~~~~~~~Din 777 (1022)
.+|+|||||+||||||.++|+ +||+|+|||||++.++.++|++
T Consensus 534 ~~G~KMSKSkGNvIdP~dvIe-------------------------------------~yGaDalR~~L~~~~~~g~D~~ 576 (1052)
T PRK14900 534 EKGQKMSKTKGNVIDPLVITE-------------------------------------QYGADALRFTLAALTAQGRDIK 576 (1052)
T ss_pred CCCCCccCCCCCCCCHHHHHH-------------------------------------HhCcHHHHHHHHhcCCCCCCCc
Confidence 999999999999999999999 8999999999999999999999
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCC-CCCCChhhHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHH
Q 001708 778 LDIQRVVGYRQWCNKLWNAVRFSMSKLGEGFVPPLKLH-PHNLPFSCKWILSVLNKAISRTASSLNSYEFSDAASTVYSW 856 (1022)
Q Consensus 778 f~~~~~~~~r~f~nkl~N~~rf~l~~l~~~~~p~~~~~-~~~~~~~D~wil~~L~~~~~~v~~a~e~~~f~~a~~~i~~f 856 (1022)
|+.+.++++++|+|+|||+.||+++++.+ |.+..... ...++..|+||+++|+.++..+.++|++|+|+.|++.+++|
T Consensus 577 fs~~~l~~~~~f~nkl~N~~R~~~~~~~~-~~~~~~~~~~~~~~~~D~wils~l~~~i~~v~~~~e~y~f~~A~~~i~~f 655 (1052)
T PRK14900 577 LAKERIEGYRAFANKLWNASRFALMNLSG-YQERGEDPARLARTPADRWILARLQRAVNETVEALEAFRFNDAANAVYAF 655 (1052)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhhhc-cCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 99999999999999999999999877643 53322111 12356789999999999999999999999999999999999
Q ss_pred HHhhhhHHHHHhhcccccCCCcccHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHhCCCCCCC-CCCCCeeeccCC
Q 001708 857 WQYQFCDVFIEAIKPYFAGDNPAFASERSAAQHVLWVCLETGLRLLHPFMPFVTEELWQRLPQPKGC-ATKESIMLCEYP 935 (1022)
Q Consensus 857 ~~~~l~~~Yle~~K~~l~~~~~~~~~~r~~a~~~L~~~L~~~l~LL~PfmPfitEelwq~L~~~~~~-~~~~SI~~~~~P 935 (1022)
+++++||+||+.+|+++++++.. .++.++.+|+.+|+.+++||||||||+|||||++|+..... ...+||++++||
T Consensus 656 ~~~~~~n~Yie~~k~~l~~~~~~---~~~~~~~~L~~~L~~l~~LLaPfmP~~aEeiw~~L~~~~~~~~~~~SV~~~~wP 732 (1052)
T PRK14900 656 VWHELCDWYIELAKEALASEDPE---ARRSVQAVLVHCLQTSYRLLHPFMPFITEELWHVLRAQVGASAWADSVLAAEYP 732 (1052)
T ss_pred HHHhhhHHHHHhccHhhccCCHH---HHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhccccccCCCCCceeecCCC
Confidence 99999999999999998876443 56678899999999999999999999999999999753110 113699999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCc--c----eEEEEecCchhHHHHHH-HHHHHHHhhccCcEE
Q 001708 936 SAVEGWTDERAEFEMDLVESTVRCIRSLRAEVLGKQKNER--L----PAIAFCQTKGVSEIIRS-HELEIVTLSTSSSLK 1008 (1022)
Q Consensus 936 ~~~~~~~~~~~e~~~~~v~~iv~~iRslr~~~~~k~i~~~--~----~v~i~~~~~~~~~~l~~-~~~~I~~L~~v~~v~ 1008 (1022)
.+++ .|+.++..|+.+++++..||++|+++ +++.+ . .++|.+.+.+..+.++. +...|+.|+++++|.
T Consensus 733 ~~~~--~d~~~e~~~~~v~~ii~~iR~~R~~~---~i~~~~~l~~~~~~~v~~~~~~~~~~l~~~~~~~i~~l~~~~~v~ 807 (1052)
T PRK14900 733 RKGE--ADEAAEAAFRPVLGIIDAVRNIRGEM---GIPWKVKLGAQAPVEIAVADPALRDLLQAGELARVHRVAGVEGSR 807 (1052)
T ss_pred CCCc--ccHHHHHHHHHHHHHHHHHHHHHHHc---CCCCCCccCCCCeEEEEcCCHHHHHHHHHHHHHHHHHhhCCCeeE
Confidence 9876 68889999999999999999999999 88543 3 45666667666677888 899999999999999
Q ss_pred EecCCC-CCCCCcc
Q 001708 1009 ALSFGL-LPLKIVV 1021 (1022)
Q Consensus 1009 i~~~~~-~p~~~~~ 1021 (1022)
++.... .+.+|++
T Consensus 808 ~~~~~~~~~~~~~~ 821 (1052)
T PRK14900 808 LVVAAATAPAPQSA 821 (1052)
T ss_pred eeccccccCcccce
Confidence 875432 4567653
No 8
>TIGR00422 valS valyl-tRNA synthetase. The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase.
Probab=100.00 E-value=1.3e-182 Score=1703.06 Aligned_cols=784 Identities=51% Similarity=0.887 Sum_probs=723.4
Q ss_pred hhcCCCChhHHHHHHHHHHHcCCcccCCCCCCCcEEEECCCCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeeeeeccCC
Q 001708 143 MAKEYNPSSVEKSWYSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMD 222 (1022)
Q Consensus 143 ~~~~y~p~~vE~~w~~~W~~~~~f~~~~~~~k~~f~i~~pPPy~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG~D 222 (1022)
|++.|||+++|++||++|+++|+|+++.+.++++|+|++|||||||.||||||+|++++|+++||+||+|++|+|+||||
T Consensus 1 ~~~~y~~~~iE~~~~~~W~~~~~f~~~~~~~~~~f~i~~ppPy~nG~lHiGH~~~~~~~D~~~Ry~rm~G~~vl~~~G~D 80 (861)
T TIGR00422 1 MPKDYDPHEVEKKWYKKWEKSGFFKPDGNSNKPPFCIDIPPPNVTGSLHIGHALNWSIQDIIARYKRMKGYNVLWLPGTD 80 (861)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCcccCcccCCCeEEEEeCCCCCCCCCcHHHhHHHHHHHHHHHHHHhcCCcccCCCCcC
Confidence 46789999999999999999999999876667899999999999999999999999999999999999999999999999
Q ss_pred ccChhHHHHHHHHHHHHhCCCccccChHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHH
Q 001708 223 HAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRL 302 (1022)
Q Consensus 223 ~~Glp~q~~vEk~l~~~~~~~~~~~g~e~f~~~~~~~~~~~~~~i~~ql~rlG~s~DW~r~~~T~d~~~~~~v~~~F~~L 302 (1022)
|||||||.+||+++. ..|++++++||++|+++||+|++++++.|++||++||+|+||+|+|+||||.|+++|+++|++|
T Consensus 81 ~~Glp~e~~vek~~~-~~g~~~~~~~~e~f~~~~~~~~~~~~~~~~~~~~~lG~s~Dw~r~~~T~d~~~~~~v~~~F~~L 159 (861)
T TIGR00422 81 HAGIATQVKVEKKLG-AEGKTKHDLGREEFREKIWEWKEESGGTIKNQIKRLGASLDWSRERFTMDEGLSKAVKEAFVRL 159 (861)
T ss_pred cCCCcHHHHHHHHhc-ccCCchhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCeeeecCCCcCcCCHHHHHHHHHHHHHH
Confidence 999999999999874 4688999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCcEEEcceeeeecCCCCccccccccccccCCCceEEeecCccccccceeeEeEeeecCCCc-ceEEEeecccccccc
Q 001708 303 YKEGLIYRDLRLVNWDCVLRTAISDIEVDYVDIPKREMRNVPGYEKQVEFGVLTSFAYPLEGGL-GEIVVATTRVETMLG 381 (1022)
Q Consensus 303 ~ekGlIyr~~~~V~W~p~~~TaLsd~EVe~~~~~~~t~~~vp~y~~~~e~g~l~~~~y~l~~~~-~~l~v~TTrPeTl~g 381 (1022)
|++|||||+.++|+|||+|+|+|||+||+|+++. |.+++++|++.+++ .+|+|||||||||+|
T Consensus 160 ~~~GlIy~~~~~v~wcp~~~t~lsd~Ev~~~~~~----------------~~~~~i~f~~~~~~~~~l~vaTtrPeTl~~ 223 (861)
T TIGR00422 160 YEKGLIYRGEYLVNWDPKLNTAISDIEVEYKEVK----------------GKLYYIRYPLANGSKDYLVVATTRPETMFG 223 (861)
T ss_pred HHCCCeeecCcccccCCCCCCcchHhHhhccccc----------------ceEEEEEEEecCCCCCEEEEEeCCcchhhh
Confidence 9999999999999999999999999999998876 45788999998765 799999999999999
Q ss_pred CcEEEEcCCccccccccCCeeecCCCCCccceEeCCccccCCCCCCceecCCCCCcchHHHHHHcCCceeeeeCCCCccc
Q 001708 382 DTAIAIHPEDARYSHLHGKFAIHPFNGRKIPIICDAILVDPKFGTGAVKITPAHDPNDFDVGKRHNLEFINIFTDDGKIN 461 (1022)
Q Consensus 382 ~~avaV~P~d~ry~~L~G~~~~~P~~~~~~pIi~~~~~V~~~~GTG~V~~~PaH~~~Dy~~~~~~~L~~i~iid~~G~~~ 461 (1022)
|+||||||+|+||++|+|+++.||++++++|||+|++ |++++|||+||+|||||++||++|++|||+++++||++|+++
T Consensus 224 ~~av~V~P~~~ry~~l~g~~~~~P~~~~~ipii~~~~-V~~~~GTG~V~~~Pah~~~D~~~~~~~~l~~~~~id~~G~~~ 302 (861)
T TIGR00422 224 DTAVAVHPEDERYKHLIGKKVILPLTGRKIPIIADEY-VDMEFGTGAVKVTPAHDFNDYEWGKRHNLEFINILDEDGLLN 302 (861)
T ss_pred CeEEEECCCchHHHHhcCCEEEcCCCCCcceeeecCC-CCcccCCCceEecCCCChHHHHHHHHcCCCccceeCCCCeEc
Confidence 9999999999999999999999999999999999995 999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCChhhHHHHHHHHHHHcCCccccccccccccccccCCCceecccccccceechHHHHHHHHhhhccCCCce
Q 001708 462 SNGGLEFEGMPRFKAREAVNEALKKKGLYRGAKDNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKL 541 (1022)
Q Consensus 462 e~~g~~f~G~~~~~ar~~vi~~L~~~gll~~~~~~~~~~p~c~Rs~~~i~~~~~~QWFi~~~~l~~~al~~v~~~~~~~i 541 (1022)
++|| .|+||++++||+.|++.|+++|++++.+++.|++|+|||||++|++++++||||+++++++++++++ +++++
T Consensus 303 ~~~~-~~~G~~~~~ar~~i~~~L~~~g~l~~~~~~~~~~p~~~R~g~~ve~~~~~qWFi~~~~~~~~~~~~~---~~~~i 378 (861)
T TIGR00422 303 ENAG-KYQGLTRFEARKKIVEDLKEEGLLVKIEPHTHNVGTCWRSGTVVEPLLSKQWFVKVEKLADKALEAA---EEGEI 378 (861)
T ss_pred CCCc-ccCCcCHHHhHHHHHHHHHhCCCeeeeeeeeccCCEeCCCCCEEEEEecCcceEecHHHHHHHHHHh---hcCCe
Confidence 9999 9999999999999999999999999999999999999999999999999999999999999999999 77889
Q ss_pred EEeccccHHHHHHHHhhccCccceeccCCCCccCcceeccCchhhhccCCCCcceEEecCHHHHHHHHhhhcCCCCcccc
Q 001708 542 ELIPRQYTAEWRRWLEAIRDWCVSRQLWWGHQIPAWYVTLEDDELKELGSYNDHWIVARDEKEALAVANKKFSGKKFEMC 621 (1022)
Q Consensus 542 ~~~P~~~~~~~~~wl~~l~DWcISRQ~~WG~pIP~~~~~~~~~~~~~~~~~~~~w~~~~~~~ea~~~~~~~~~~~~~~~~ 621 (1022)
+|+|++.++++.+||++++|||||||||||||||+|+|..|+ .+.++.+..++...+ .++ ....+.
T Consensus 379 ~~~P~~~~~~~~~wl~~l~DW~ISRq~~WG~piP~w~~~~~~-----------~~~v~~~~~~~~~~~--~~~-~~~~~~ 444 (861)
T TIGR00422 379 KFVPKRMEKRYLNWLRNIKDWCISRQLIWGHRIPVWYCKECG-----------EVYVAKEEPLPDDKT--NTG-PSVELE 444 (861)
T ss_pred EEEChHHHHHHHHHHhccccceeeeecccCCcceEEEECCCC-----------cEEeccchHHhhhhh--ccC-CcccEE
Confidence 999999999999999999999999999999999999997553 344555555444332 222 234799
Q ss_pred cCCCcEEEEeccCccccccccCCCCChhhhhcCCcCcccccccccchHHHHHHHHHhhhcCCCCceEEEeccceeCCCCc
Q 001708 622 QDPDVLDTWFSSGLFPLSVLGWPDDTDDLKAFYPTSVLETGHDILFFWVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGR 701 (1022)
Q Consensus 622 ~d~DvlDtWFdSgl~p~s~lg~p~~~~d~~~~~P~dl~~~G~Dil~fW~a~m~~~~~~l~~~~Pfk~V~~Hg~v~D~~Gr 701 (1022)
|++||||||||||+||++++|||+++.+|++|||+|++++|+||+|||+++|++++++++++.||++|++||+|+|.+|+
T Consensus 445 ~~~dVlDtWFdS~l~~~s~~g~p~~~~~~~~~~P~d~~~~G~Dii~fw~~~~~~~~~~~~~~~Pfk~v~~hG~v~d~~G~ 524 (861)
T TIGR00422 445 QDTDVLDTWFSSSLWPFSTLGWPDETKDLKKFYPTDLLVTGYDIIFFWVARMIFRSLALTGQVPFKEVYIHGLVRDEQGR 524 (861)
T ss_pred ECCCcccceeccchHHHHHhCCCCChHHHhhcCCcceeecchhhhhHHHHHHHHHHHHhcCCCchheEEEeeEEECCCCC
Confidence 99999999999999999999999988899999999999999999999999999999999999999999999999999999
Q ss_pred cceecCCcccCcchhhccccchhHHHhhhcCCCChHHHHHHHhcccCCCCCCCCCCCchHHHHHHHhccCCCcccccchh
Q 001708 702 KMSKSLGNVIDPLEVINGISLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLDIQ 781 (1022)
Q Consensus 702 KMSKSlGNvIdP~dvI~g~~l~~l~~~l~~~nl~~~e~~~a~~~~~~~~~~~i~~~GaDaLR~~L~~~~~~~~Dinf~~~ 781 (1022)
|||||+||+|+|.++|+ +||+|+|||||++.++.++|++|+.+
T Consensus 525 KMSKS~GN~i~p~~~i~-------------------------------------~ygaDalR~~l~~~~~~~~d~~f~~~ 567 (861)
T TIGR00422 525 KMSKSLGNVIDPLDVIE-------------------------------------KYGADALRFTLASLVTPGDDINFDWK 567 (861)
T ss_pred CCCcCCCCCCCHHHHHH-------------------------------------HhChHHHHHHHHhCCCCCCCceecHH
Confidence 99999999999999999 89999999999999888999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHhhh
Q 001708 782 RVVGYRQWCNKLWNAVRFSMSKLGEGFVPPLKLHPHNLPFSCKWILSVLNKAISRTASSLNSYEFSDAASTVYSWWQYQF 861 (1022)
Q Consensus 782 ~~~~~r~f~nkl~N~~rf~l~~l~~~~~p~~~~~~~~~~~~D~wil~~L~~~~~~v~~a~e~~~f~~a~~~i~~f~~~~l 861 (1022)
.+.++++|+|||||+.||+.+++.. +.. ...........|+||+++|+.+++.++++|++|+|+.|++.+++|+|+++
T Consensus 568 ~~~~~~~~~nkl~N~~rf~~~~~~~-~~~-~~~~~~~~~~~D~wil~~l~~~~~~v~~~~e~~~f~~A~~~l~~f~~~~~ 645 (861)
T TIGR00422 568 RVESARNFLNKLWNASRFVLMNLSD-DLE-LSGGEEKLSLADRWILSKLNRTIKEVRKALDKYRFAEAAKALYEFIWNDF 645 (861)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccc-ccc-cccccccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999876543 210 00001135678999999999999999999999999999999999988999
Q ss_pred hHHHHHhhcccccCCCcccHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHhCCCCCCCCCCCCeeeccCCCCCCCC
Q 001708 862 CDVFIEAIKPYFAGDNPAFASERSAAQHVLWVCLETGLRLLHPFMPFVTEELWQRLPQPKGCATKESIMLCEYPSAVEGW 941 (1022)
Q Consensus 862 ~~~Yle~~K~~l~~~~~~~~~~r~~a~~~L~~~L~~~l~LL~PfmPfitEelwq~L~~~~~~~~~~SI~~~~~P~~~~~~ 941 (1022)
||+||+.+|||++.++.. .++.++.+|+.+|+.+++||||||||+|||||++|+.. .+||++++||++++.+
T Consensus 646 ~n~Yie~~k~~~~~~~~~---~~~~~~~~l~~~l~~~~~lL~Pf~P~itEelw~~L~~~-----~~si~~~~~P~~~~~~ 717 (861)
T TIGR00422 646 CDWYIELVKYRLYNGNEA---EKKAARDTLYYVLDKALRLLHPFMPFITEEIWQHFKEG-----ADSIMLQSYPVVDAEF 717 (861)
T ss_pred HHHHHHHhHHHHcCCCcH---HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhCccc-----CCceeecCCCCccccc
Confidence 999999999998765433 57789999999999999999999999999999999752 3699999999999989
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhccCCCC--CcceEEEEecCchhHHHHHHHHHHHHHhhccCcEEEecC
Q 001708 942 TDERAEFEMDLVESTVRCIRSLRAEVLGKQKN--ERLPAIAFCQTKGVSEIIRSHELEIVTLSTSSSLKALSF 1012 (1022)
Q Consensus 942 ~~~~~e~~~~~v~~iv~~iRslr~~~~~k~i~--~~~~v~i~~~~~~~~~~l~~~~~~I~~L~~v~~v~i~~~ 1012 (1022)
.|++++..|+.+++++..+|++|+++ +++ .+..+++.+.+.+..+.++.+...|+.|+++++|+++.+
T Consensus 718 ~d~~~e~~~~~l~~ii~~iR~~r~~~---~i~~~~~l~~~i~~~~~~~~~~l~~~~~~I~~l~~v~~v~~~~~ 787 (861)
T TIGR00422 718 VDEEAEKAFELLKEIIVSIRNLKAES---NIPPNAPLKVLLIYTEAETAERLKLNAVDIKGAINFSEVEVVIE 787 (861)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHc---CCCCCCcceEEEEeCCHHHHHHHHHHHHHHhhhcCCCceEeecc
Confidence 99999999999999999999999998 884 444566656555566788999999999999999998754
No 9
>PTZ00427 isoleucine-tRNA ligase, putative; Provisional
Probab=100.00 E-value=2.9e-179 Score=1681.40 Aligned_cols=811 Identities=21% Similarity=0.349 Sum_probs=709.5
Q ss_pred chhhhcCCCChhHHHHHHHHHHHcCCcccCCC--CCCCcEEEECCCCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeeee
Q 001708 140 SKQMAKEYNPSSVEKSWYSWWENSGYFIADNK--SSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALW 217 (1022)
Q Consensus 140 ~~~~~~~y~p~~vE~~w~~~W~~~~~f~~~~~--~~k~~f~i~~pPPy~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~ 217 (1022)
..+++..|||.++|.+|+++|+++++|++..+ .++++|+|++|||||||.||||||+|++++|+++||+||+||+|+|
T Consensus 65 ~~~~~~~~~~~~~E~~~~~~W~e~~~f~~~~~~~~~~~~Fv~~~gPPyanG~lHiGHal~~tikDii~Ry~rm~G~~V~~ 144 (1205)
T PTZ00427 65 FTGVSENPNIVEEEEKVLKYWKSIDAFNTSNKLAKNKKAYIFYDGPPFATGLPHYGHLLAGIIKDCVTRYFYQCGFSVER 144 (1205)
T ss_pred ccCCCCCCCHHHHHHHHHHHHHhCCCcccCccccCCCCcEEEecCCCCCCCCcchhHHHHHHHHHHHHHHHHcCCCeecc
Confidence 34566779999999999999999999999764 4567899999999999999999999999999999999999999999
Q ss_pred eccCCccChhHHHHHHHHHHHHhCCCccccChHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHH
Q 001708 218 VPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTE 297 (1022)
Q Consensus 218 ~pG~D~~Glp~q~~vEk~l~~~~~~~~~~~g~e~f~~~~~~~~~~~~~~i~~ql~rlG~s~DW~r~~~T~d~~~~~~v~~ 297 (1022)
+|||||||||||.+|||+++........++|+++|+++|++|+.+|++.+++||++||+|+||+++|+||||.|+++|+|
T Consensus 145 ~~GwD~hGlPiE~~vEk~lg~~~k~~i~~~g~~~f~e~c~~~~~~~~~~~~~~~~rlG~~iDw~~~y~T~d~~~~~~v~~ 224 (1205)
T PTZ00427 145 KFGWDCHGLPIEYEIEKENNINKKEDILKMGIDVYNEKCRGIVLKYSNEWVKTVERIGRWIDFKNDYKTMDKTFMESVWW 224 (1205)
T ss_pred CCccCCCCcHHHHHHHHHhCCCcccchhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhCcEEecCCCcCcCCHHHHHHHHH
Confidence 99999999999999999874333334456999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCcEEEcceeeeecCCCCcccccccc--ccccCCCceE-EeecC-------------ccccccceeeEeEeee
Q 001708 298 AFVRLYKEGLIYRDLRLVNWDCVLRTAISDIEV--DYVDIPKREM-RNVPG-------------YEKQVEFGVLTSFAYP 361 (1022)
Q Consensus 298 ~F~~L~ekGlIyr~~~~V~W~p~~~TaLsd~EV--e~~~~~~~t~-~~vp~-------------y~~~~e~g~l~~~~y~ 361 (1022)
+|.+||++|||||+.++|+|||.|+|+|||+|| +|+|+.++++ ++||. +..+.++|.++++.|+
T Consensus 225 ~f~~L~ekGlIYr~~k~V~wcp~c~TaLS~~EV~~~ykd~~dpsi~v~F~l~~~~~~~~~~~~~~~~~~~~~~~~~i~y~ 304 (1205)
T PTZ00427 225 VFSELYKNNYVYKSFKVMPYSCKCNTPISNFELNLNYKDTPDPSIIISFVLCSDFPKVEEECNIEEDKQLLGEKYSVLYN 304 (1205)
T ss_pred HHHHHHHCCCEEecceeeccCCCCCCchhHHHhhcccccccCceEEEEeecccccccccccccccccccccccceeeccc
Confidence 999999999999999999999999999999999 8999999875 46644 3345667888888887
Q ss_pred cC-----------------CCcceEEEeeccccccccCcEEEEcCCcc--cc----------------------------
Q 001708 362 LE-----------------GGLGEIVVATTRVETMLGDTAIAIHPEDA--RY---------------------------- 394 (1022)
Q Consensus 362 l~-----------------~~~~~l~v~TTrPeTl~g~~avaV~P~d~--ry---------------------------- 394 (1022)
+. .++.+++||||||||||||+||||||+++ +|
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~lliwTTtPwTLpan~AlaVnPd~~Yv~v~~~~~~~~~i~a~~~~~~~~~~~~~~~~ 384 (1205)
T PTZ00427 305 NKRENSNNGNNNSTNNVCYAQHSEILAWTTTPWTLPSNLALCVNEHFTYLRIHHVKSNRVVIVGECRLEWIMKELKWNVE 384 (1205)
T ss_pred cccccccccccccccccccCCCCEEEEEECCchhhhhceEEEECCCCeEEEEEecCCCeEEEEehHHHHHHHHhhccccc
Confidence 62 12468999999999999999999999965 22
Q ss_pred ----------ccccCCeeecCC---------CCCccceEeCCccccCCCCCCceecCCCCCcchHHHHHHcCC------c
Q 001708 395 ----------SHLHGKFAIHPF---------NGRKIPIICDAILVDPKFGTGAVKITPAHDPNDFDVGKRHNL------E 449 (1022)
Q Consensus 395 ----------~~L~G~~~~~P~---------~~~~~pIi~~~~~V~~~~GTG~V~~~PaH~~~Dy~~~~~~~L------~ 449 (1022)
++|+|++|.||| .++.+|||+|++ |++++|||+||+|||||++||++|++||| +
T Consensus 385 ~~~v~~~~~G~~L~g~~Y~pl~~~~~~~~~~~~~~~pVi~~d~-V~~~~GTGiVh~aPahg~~Dy~v~~k~gL~~~~~~~ 463 (1205)
T PTZ00427 385 DLKIVNRFKGKELKGLRYKPLFTNFYEKYNFKERAYKILADDF-VTDDAGTGIVHCAPTYGEDDFRVCKKNGVIDPEKNI 463 (1205)
T ss_pred ccEEEEEeechhhCCCeeeCCccccccccccCCceeEEEccCc-cCCCCCceeeEecCCCChhHHHHHHHcCCCCccccc
Confidence 246688888887 267899999995 99999999999999999999999999999 2
Q ss_pred eeeeeCCCCccccCCCCCCCCCChhhHHHHHHHHHHHcCCccccccccccccccccCCCceecccccccceechHHHHHH
Q 001708 450 FINIFTDDGKINSNGGLEFEGMPRFKAREAVNEALKKKGLYRGAKDNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEA 529 (1022)
Q Consensus 450 ~i~iid~~G~~~e~~g~~f~G~~~~~ar~~vi~~L~~~gll~~~~~~~~~~p~c~Rs~~~i~~~~~~QWFi~~~~l~~~a 529 (1022)
++++||++|+|++++| +|+||.++|||+.|++.|+++|+|++.+++.|+||+|||||+||++++++||||+++++++++
T Consensus 464 ~~~~vd~~G~~~~~~~-~~~G~~v~dA~~~Ii~~Lk~~g~L~~~e~~~H~yP~cwR~~tpli~~a~~QWFI~~~~~k~~~ 542 (1205)
T PTZ00427 464 FIDPLDANGYFTNEVE-EVQNLYIKEADNVIKKKLKNENRLLSNNTIVHSYPFCWRSDTPLIYRAIPAWFIRVSNSTNEL 542 (1205)
T ss_pred cccccCCCceecCCCc-ccCCCCHHHhHHHHHHHHHhCCCeeeeeeeeccCCEeCCCCCEEEEEecceeEEeCcHHHHHH
Confidence 7899999999999988 899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhccCCCceEEecccc-HHHHHHHHhhccCccceeccCCCCccCcceeccCchhhhccCCCCcceEEecCHHHHHHH
Q 001708 530 LYAVMDDDKKKLELIPRQY-TAEWRRWLEAIRDWCVSRQLWWGHQIPAWYVTLEDDELKELGSYNDHWIVARDEKEALAV 608 (1022)
Q Consensus 530 l~~v~~~~~~~i~~~P~~~-~~~~~~wl~~l~DWcISRQ~~WG~pIP~~~~~~~~~~~~~~~~~~~~w~~~~~~~ea~~~ 608 (1022)
++++ ++++|+|+++ +++|.+||+|++|||||||||||||||+|+|..++ .+++..+.+++...
T Consensus 543 l~~~-----~~i~w~P~~~~~~r~~~wl~n~~DWcISRqR~WGtPIPvW~~~~~~-----------~~~~i~s~~el~~~ 606 (1205)
T PTZ00427 543 VKNN-----ETTYWIPAHIKEKKFHNWIKDAKDWCISRNRYWGTPIPIWADEKME-----------TVICVESIKHLEEL 606 (1205)
T ss_pred HHcC-----CccEEeCchhhHhHHHHHHhcCccceeeeccccCccceeEEcCCCC-----------eEeccCCHHHHHHH
Confidence 9876 7899999999 69999999999999999999999999999997553 22222333332221
Q ss_pred Hh----------------hhcCC-C-CcccccCCCcEEEEeccCccccccccCCC--CChhhhhcCCcCcccccccccch
Q 001708 609 AN----------------KKFSG-K-KFEMCQDPDVLDTWFSSGLFPLSVLGWPD--DTDDLKAFYPTSVLETGHDILFF 668 (1022)
Q Consensus 609 ~~----------------~~~~~-~-~~~~~~d~DvlDtWFdSgl~p~s~lg~p~--~~~d~~~~~P~dl~~~G~Dil~f 668 (1022)
.. -.||. + ...++|++||||||||||+||++++|||. ++.+|+++||+|++++|+||+||
T Consensus 607 ~~~~~~~dlh~~~iD~~~~~~~~g~~~~~~~r~~DVlD~WFdSg~~p~a~~~~P~~~~~~~f~~~fPaD~i~eG~Dq~rg 686 (1205)
T PTZ00427 607 SGVKNINDLHRHFIDHIEIKNPKGKTYPKLKRIPEVFDCWFESGSMPYAKVHYPFSTEKEDFHKIFPADFIAEGLDQTRG 686 (1205)
T ss_pred hccccchhhcccccChhhccCCccccccceeecCceEEEEEeCCCChHHHhCCCcccchhhHhccCCceEEEEecchhcc
Confidence 11 01221 1 12589999999999999999999999998 46789999999999999999999
Q ss_pred HHHHHHHHHhhhcCCCCceEEEeccceeCCCCccceecCCcccCcchhhccccchhHHHhhhcCCCChHHHHHHHhcccC
Q 001708 669 WVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLEGLHKRLEEGNLDPKELEVAKKGQKA 748 (1022)
Q Consensus 669 W~a~m~~~~~~l~~~~Pfk~V~~Hg~v~D~~GrKMSKSlGNvIdP~dvI~g~~l~~l~~~l~~~nl~~~e~~~a~~~~~~ 748 (1022)
||++|+++|++++|++||++|++||||+|++|+|||||+||||||.++|+
T Consensus 687 Wf~s~l~~s~~l~~~~PfK~VlvHG~Vld~dG~KMSKSlGNvIDP~evI~------------------------------ 736 (1205)
T PTZ00427 687 WFYTLLVISTLLFDKAPFKNLICNGLVLASDGKKMSKRLKNYPDPLYILD------------------------------ 736 (1205)
T ss_pred HHHHHHHHHHHhcCCCCcceeEEccEEEcCCCCCcccCCCCCCCHHHHHH------------------------------
Confidence 99999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCchHHHHHHHhccC-CCcccccchhhh-HHHHHHHHHHHHHHHHHHhhcCC-------CCCCCCCCCCCCC
Q 001708 749 DFPNGIPECGTDALRFALVSYTA-QSDKINLDIQRV-VGYRQWCNKLWNAVRFSMSKLGE-------GFVPPLKLHPHNL 819 (1022)
Q Consensus 749 ~~~~~i~~~GaDaLR~~L~~~~~-~~~Dinf~~~~~-~~~r~f~nkl~N~~rf~l~~l~~-------~~~p~~~~~~~~~ 819 (1022)
+||||||||||++.+. .++|++|+.+.+ +.+++|++++||+++|+++++.+ +|.+.........
T Consensus 737 -------kYGADaLR~~Lls~~~~~~~Dl~Fse~~v~e~~r~~l~klwN~~rF~~~~i~~~~~~~~~~f~~~~~~~~~~~ 809 (1205)
T PTZ00427 737 -------KYGADSLRLYLINSVAVRAENLKFQEKGVNEVVKSFILPFYHSFRFFSQEVTRYECLNKKQFLFNTDYIYKND 809 (1205)
T ss_pred -------hcCCcHHHHHHHhcCCCCCcccccCHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccCCcCcccccccC
Confidence 8999999999998766 478999999998 57899999999999999987642 2222110001234
Q ss_pred ChhhHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHhhhhHHHHHhhcccccCCC-cccHHHHHHHHHHHHHHHHHH
Q 001708 820 PFSCKWILSVLNKAISRTASSLNSYEFSDAASTVYSWWQYQFCDVFIEAIKPYFAGDN-PAFASERSAAQHVLWVCLETG 898 (1022)
Q Consensus 820 ~~~D~wil~~L~~~~~~v~~a~e~~~f~~a~~~i~~f~~~~l~~~Yle~~K~~l~~~~-~~~~~~r~~a~~~L~~~L~~~ 898 (1022)
+.+|+||+++|+++++.++++|++|+|+.|++.|++|++ ++|||||+.+|++++.+. .. .+.+++.||+++|..+
T Consensus 810 ~~~DrWILs~l~~li~~v~~~me~Y~f~~A~~~i~~Fi~-~lsnwYIe~~K~rl~~~~~~~---~~~~a~~tL~~vL~~~ 885 (1205)
T PTZ00427 810 NIMDQWIFSSVQSLTKSVHTEMKAYKLYNVLPKLLQFIE-NLTNWYIRLNRDRMRGSLGEE---NCLQSLCTTYRTLHLF 885 (1205)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH-HhccHHHHHcchhhccCCCcH---HHHHHHHHHHHHHHHH
Confidence 678999999999999999999999999999999999984 699999999999998652 32 5678999999999999
Q ss_pred HHHHhchhhHHHHHHHHhCCCCCCC--------------------CCCCCeeeccCCCCCCCC-CCHHHHHHHHHHHHHH
Q 001708 899 LRLLHPFMPFVTEELWQRLPQPKGC--------------------ATKESIMLCEYPSAVEGW-TDERAEFEMDLVESTV 957 (1022)
Q Consensus 899 l~LL~PfmPfitEelwq~L~~~~~~--------------------~~~~SI~~~~~P~~~~~~-~~~~~e~~~~~v~~iv 957 (1022)
++||||||||+||+|||+|+..... ...+|||++.||++++.+ +|++++..|+.+++++
T Consensus 886 ~~LLaPf~PfiaEeiyq~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Svh~~~~P~~~~~~~~d~~~e~~~~~~~~ii 965 (1205)
T PTZ00427 886 TVLMAPFTPFITEYIYQQLRRVKSTNEHNENNETGNTKEGDLNRGVIHKSVHFIMLPQVDEKYIIDYEIIELIEKMKDVI 965 (1205)
T ss_pred HHHccccchHHHHHHHHHhhhccccccccccccccccccccccccCCCCeeEeeCCCCCcchhccCHHHHHHHHHHHHHH
Confidence 9999999999999999999742100 013699999999998876 7999999999999999
Q ss_pred HHHHHHHHHhccCCCCCcceE---EEEecCchhHHHHHHHHHHHHHhhccCcEEEecC
Q 001708 958 RCIRSLRAEVLGKQKNERLPA---IAFCQTKGVSEIIRSHELEIVTLSTSSSLKALSF 1012 (1022)
Q Consensus 958 ~~iRslr~~~~~k~i~~~~~v---~i~~~~~~~~~~l~~~~~~I~~L~~v~~v~i~~~ 1012 (1022)
..+|++|++. +++.+.++ .|...+....+.++.+.+.|+.++||.+|++..+
T Consensus 966 ~~~R~~R~~~---~i~~r~pl~~~~v~~~~~~~~~~~~~~~~~i~~e~nv~~v~~~~~ 1020 (1205)
T PTZ00427 966 LLGRVLRERR---KVASKKPLKSITILHPNESYFKNFDQISNYIKEELNVLNVECSND 1020 (1205)
T ss_pred HHHHHHHHHc---CCCCCCccceeEEecCcHHHHHHHHHHHHHHHHhhCcceEEEEec
Confidence 9999999998 88656553 3444555566778888999999999999998754
No 10
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=3.9e-176 Score=1653.71 Aligned_cols=785 Identities=28% Similarity=0.437 Sum_probs=703.2
Q ss_pred hhhhcCCCChhHHHHHHHHHHHcCCcccCCC--CCCCcEEEECCCCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeeeee
Q 001708 141 KQMAKEYNPSSVEKSWYSWWENSGYFIADNK--SSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWV 218 (1022)
Q Consensus 141 ~~~~~~y~p~~vE~~w~~~W~~~~~f~~~~~--~~k~~f~i~~pPPy~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~ 218 (1022)
.++++.|||.++|++|+++|+++++|++..+ +++++|+|++|||||||.||||||+|++++|+++||+||+||+|+|+
T Consensus 5 ~~~~~~~~~~~iE~~~~~~W~~~~~f~~~~~~~~~~~~f~i~~~PPy~nG~lH~GH~l~~t~kD~i~Ry~rm~G~~v~~~ 84 (975)
T PRK06039 5 PEVDSQPDFPALEEEVLKFWKENDIFEKSIENREGGPEFVFYDGPPTANGLPHYGHLLTRTIKDVVPRYKTMKGYKVERR 84 (975)
T ss_pred cccCCCCCHHHHHHHHHHHHHHCCCcccCccccCCCCCEEEeCCCCCCCCCccHhhhHhhHHHHHHHHHHHhCCCcccCc
Confidence 4467889999999999999999999998654 56789999999999999999999999999999999999999999999
Q ss_pred ccCCccChhHHHHHHHHHHHHhCCCccccChHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHH
Q 001708 219 PGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEA 298 (1022)
Q Consensus 219 pG~D~~Glp~q~~vEk~l~~~~~~~~~~~g~e~f~~~~~~~~~~~~~~i~~ql~rlG~s~DW~r~~~T~d~~~~~~v~~~ 298 (1022)
|||||||||||.+|||+++.......+++|+++|+++|++|+.++++.|++||++||+|+||+|+|+||||.|+++|+|+
T Consensus 85 ~GwD~~GlPie~~vek~l~~~~~~~i~~~g~~~f~~~c~~~~~~~~~~~~~~~~rlG~~~Dw~~~y~T~d~~y~~~v~~~ 164 (975)
T PRK06039 85 AGWDTHGLPVELEVEKELGISGKKDIEEYGIEKFNEKCRESVLRYTDEWEEYTERLGRWVDFDNPYKTLDNEYMESVWWA 164 (975)
T ss_pred CCcCCCccHHHHHHHHHhCcccccchhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhCceeecCCCcCcCCHHHHHHHHHH
Confidence 99999999999999998743323345689999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCcEEEcceeeeecCCCCccccccccc--cccCCCceEEeecCccccccceeeEeEeeecCC-CcceEEEeecc
Q 001708 299 FVRLYKEGLIYRDLRLVNWDCVLRTAISDIEVD--YVDIPKREMRNVPGYEKQVEFGVLTSFAYPLEG-GLGEIVVATTR 375 (1022)
Q Consensus 299 F~~L~ekGlIyr~~~~V~W~p~~~TaLsd~EVe--~~~~~~~t~~~vp~y~~~~e~g~l~~~~y~l~~-~~~~l~v~TTr 375 (1022)
|.+||++|||||+.++|||||+|+|+|||+||+ |+++.++ .++++|++.+ ++.+|+|||||
T Consensus 165 F~~l~~kGliyr~~~~v~wcp~~~T~Ls~~Ev~~~y~~~~~~----------------~~~v~f~l~~~~~~~l~i~TTr 228 (975)
T PRK06039 165 LKQLYDKGLLYKGYRVVPYCPRCETPLSNHEVAQGYKDVKDP----------------SVYVKFKLKGEENEYLLAWTTT 228 (975)
T ss_pred HHHHHHCCCEEecceeeeecCCCCCCccHHHHhhcccccCCc----------------eEEEEEEecCCCCCEEEEEECC
Confidence 999999999999999999999999999999999 8887754 4578999864 56799999999
Q ss_pred ccccccCcEEEEcCCc---------ccc-----------------------ccccCCeeecCCC---C--CccceEeCCc
Q 001708 376 VETMLGDTAIAIHPED---------ARY-----------------------SHLHGKFAIHPFN---G--RKIPIICDAI 418 (1022)
Q Consensus 376 PeTl~g~~avaV~P~d---------~ry-----------------------~~L~G~~~~~P~~---~--~~~pIi~~~~ 418 (1022)
||||+||+||||||++ ++| ++|+|++|.|||. + +.+||+++++
T Consensus 229 P~Tl~~n~avaV~P~~~Y~~~~~~~~~yi~a~~~~~~~~~~~~~~~~~~~G~~L~G~~~~~P~~~~~~~~~~~pii~~~~ 308 (975)
T PRK06039 229 PWTLPSNLALAVHPDIDYVKVEGGGEVYILAEALLEKVLKEDYEVVETFKGSELEGLEYEPPFPYFADEKNAFRVVLADF 308 (975)
T ss_pred ccccccceEEEECCCCceEEEecCCeEEEEhHHHHHHHhhcccEEEeeecCccccCCEEECCcccccCCcceeEEEecCc
Confidence 9999999999999998 677 7899999999997 3 4799999995
Q ss_pred cccCCCCCCceecCCCCCcchHHHHHHcCCceeeeeCCCCccccCCCCCCCCCChhhHHHHHHHHHHHcCCccccccccc
Q 001708 419 LVDPKFGTGAVKITPAHDPNDFDVGKRHNLEFINIFTDDGKINSNGGLEFEGMPRFKAREAVNEALKKKGLYRGAKDNEM 498 (1022)
Q Consensus 419 ~V~~~~GTG~V~~~PaH~~~Dy~~~~~~~L~~i~iid~~G~~~e~~g~~f~G~~~~~ar~~vi~~L~~~gll~~~~~~~~ 498 (1022)
|++++|||+||+|||||++||++|++|||+++++||++|+|++++| +|+||.++|||+.|++.|+++|++++.+++.|
T Consensus 309 -V~~~~GTG~V~~aPahg~~D~~~~~~~~l~~~~~id~~G~~~~~~~-~~~G~~v~eA~~~Ii~~L~~~g~l~~~~~~~h 386 (975)
T PRK06039 309 -VTTEDGTGIVHIAPAFGEDDFEVGKKYGLPVVCPVDDDGRFTEEVP-DYAGKFVKDADKEIIRDLKERGLLFKAETYEH 386 (975)
T ss_pred -cCCCCCccceeeCCCCChHHHHHHHHcCCCccceeCCCceEcCCCc-cccCCCHHHhhHHHHHHHHhCCCEeeeeeecC
Confidence 9999999999999999999999999999999999999999999988 99999999999999999999999999999999
Q ss_pred cccccccCCCceecccccccceechHHHHHHHHhhhccCCCceEEeccccHH-HHHHHHhhccCccceeccCCCCccCcc
Q 001708 499 RLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKLELIPRQYTA-EWRRWLEAIRDWCVSRQLWWGHQIPAW 577 (1022)
Q Consensus 499 ~~p~c~Rs~~~i~~~~~~QWFi~~~~l~~~al~~v~~~~~~~i~~~P~~~~~-~~~~wl~~l~DWcISRQ~~WG~pIP~~ 577 (1022)
+||+|||||+||++++++||||+++++++++++++ ++++|+|++.++ ++.+||++++|||||||||||||||+|
T Consensus 387 ~~p~c~R~g~pv~~~~~~qWFi~~~~~k~~ll~~~-----~~i~~~P~~~~~~~~~~wl~~l~DW~ISRqr~WG~PIPiw 461 (975)
T PRK06039 387 SYPHCWRCDTPLIYYATESWFIRVTKIKDRMLELN-----QKINWYPEHIKDGRFGKWLENARDWNISRNRYWGTPLPIW 461 (975)
T ss_pred CCCEeCCCCCEEEEEecCeeeEecHHHHHHHHHhh-----CCeEEECcccchhhHHHHHhcCccceeeeccccCCcceEE
Confidence 99999999999999999999999999999999998 569999999999 999999999999999999999999999
Q ss_pred eeccCchhhhccCCCCcceEEecCHHHHHHHH-----------------hhhcCCCCcccccCCCcEEEEeccCcccccc
Q 001708 578 YVTLEDDELKELGSYNDHWIVARDEKEALAVA-----------------NKKFSGKKFEMCQDPDVLDTWFSSGLFPLSV 640 (1022)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~w~~~~~~~ea~~~~-----------------~~~~~~~~~~~~~d~DvlDtWFdSgl~p~s~ 640 (1022)
+|..|+ .+.+..+.+++.... ...||. +..++|++||||||||||++|+++
T Consensus 462 ~~~~~g-----------~~~v~~~~~el~~~~g~~~~~~~l~~~~~d~~~~~~~~-~~~~~r~~dVlDvWFdSg~~p~a~ 529 (975)
T PRK06039 462 RCEDCG-----------RIDVIGSIEELEELFGEDVEPIDLHRPYVDEVTLPCPD-GGTMRRVPDVIDVWFDSGSMPYAQ 529 (975)
T ss_pred EecCCC-----------eEEEeccHHHHHHHhCCCcchhhhcccccccccccCCC-CcceEeccccccceeecCCccHHH
Confidence 997653 223333333332221 112332 456999999999999999999999
Q ss_pred ccCCCC-ChhhhhcCCcCcccccccccchHHHHHHHHHhhhcCCCCceEEEeccceeCCCCccceecCCcccCcchhhcc
Q 001708 641 LGWPDD-TDDLKAFYPTSVLETGHDILFFWVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVING 719 (1022)
Q Consensus 641 lg~p~~-~~d~~~~~P~dl~~~G~Dil~fW~a~m~~~~~~l~~~~Pfk~V~~Hg~v~D~~GrKMSKSlGNvIdP~dvI~g 719 (1022)
++||.+ +..|++|||+|++++|+||+||||++|+++|+.++|+.||++|++||+|+|.+|+|||||+||||||.++|+
T Consensus 530 ~~~p~~~~~~f~~~~Pad~~~~G~Di~r~Wf~~l~~~~~~~~~~~pfk~v~~hG~Vld~~G~KMSKSlGNvIdP~dli~- 608 (975)
T PRK06039 530 LHYPFENKEWFEKHFPADFIVEGIDQTRGWFYTLLALSTALFDRPPYKNVLVHGHVLDEDGQKMSKSLGNYVDPFEVFD- 608 (975)
T ss_pred hCCcccChhhhhccCCceEEEechhhHhhHHHHHHHHHHHhcCCCcccEEEEeeeEECCCCCCcCCCCCCcCCHHHHHH-
Confidence 999986 456899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhHHHhhhcCCCChHHHHHHHhcccCCCCCCCCCCCchHHHHHHHhccCCCcccccchhh-hHHHHHHHHHHHHHHH
Q 001708 720 ISLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLDIQR-VVGYRQWCNKLWNAVR 798 (1022)
Q Consensus 720 ~~l~~l~~~l~~~nl~~~e~~~a~~~~~~~~~~~i~~~GaDaLR~~L~~~~~~~~Dinf~~~~-~~~~r~f~nkl~N~~r 798 (1022)
+||+|+|||||++.++.++|++|+.+. ++.+++++|+|||+++
T Consensus 609 ------------------------------------~yGaDalR~~lls~~~~~~D~~fs~~~~~~~~~~~l~kl~N~~~ 652 (975)
T PRK06039 609 ------------------------------------KYGADALRWYLLSSSAPWEDLRFSEDGVREVVRKFLLTLWNVYS 652 (975)
T ss_pred ------------------------------------HhChHHHHHHHHhCCCCCCCceechhHHHHHHHHHHHHHHHHHH
Confidence 899999999999988889999999999 7889999999999999
Q ss_pred HHHh--hcCCCCCCCC-CCCCCCCChhhHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHhhhhHHHHHhhcccccC
Q 001708 799 FSMS--KLGEGFVPPL-KLHPHNLPFSCKWILSVLNKAISRTASSLNSYEFSDAASTVYSWWQYQFCDVFIEAIKPYFAG 875 (1022)
Q Consensus 799 f~l~--~l~~~~~p~~-~~~~~~~~~~D~wil~~L~~~~~~v~~a~e~~~f~~a~~~i~~f~~~~l~~~Yle~~K~~l~~ 875 (1022)
|++. ++. +|.+.. ......++..|+||+++|+.+++.++++|++|+|+.|++.+++|+ ++|||+|++.+|++++.
T Consensus 653 f~~~y~~~~-~~~~~~~~~~~~~~~~~D~wils~l~~li~~v~~a~e~y~~~~A~~~l~~f~-~~lsn~Yi~~~k~r~w~ 730 (975)
T PRK06039 653 FFVLYANLD-GFDYPPAEDEVDSLNELDRWILSRLNSLVKEVTEALDNYDITKAARAIRDFV-DDLSNWYIRRSRRRFWK 730 (975)
T ss_pred HHHHHhhhc-cCCccccccccccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH-HHHHHHHHHHhhhhhcc
Confidence 9863 332 243321 111224568899999999999999999999999999999999998 99999999999998876
Q ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHhCCCCCCCCCCCCeeeccCCCCCCCCCCHHHHHHHHHHHH
Q 001708 876 DNPAFASERSAAQHVLWVCLETGLRLLHPFMPFVTEELWQRLPQPKGCATKESIMLCEYPSAVEGWTDERAEFEMDLVES 955 (1022)
Q Consensus 876 ~~~~~~~~r~~a~~~L~~~L~~~l~LL~PfmPfitEelwq~L~~~~~~~~~~SI~~~~~P~~~~~~~~~~~e~~~~~v~~ 955 (1022)
.... ..+++++.+|+.+|+.+++||||||||+||+|||.|+.. ...+||++++||++++.+.|++++..|+.+++
T Consensus 731 ~~~~--~~~~~a~~~L~~~L~~l~~lLaPf~Pf~aEei~~~L~~~---~~~~sv~~~~~P~~~~~~~d~~le~~~~~~~~ 805 (975)
T PRK06039 731 EEDD--PDKLAAYATLYTVLETLSRLAAPFTPFIAEEIYQNLTRE---DAPESVHLADWPEVDESLIDEELEEAMDLVRE 805 (975)
T ss_pred CCCc--HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcccc---CCCCeeEecCCCCCccccCCHHHHHHHHHHHH
Confidence 5211 156789999999999999999999999999999999752 12469999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCCCCCcceE---EEEecCchhHHHHHHHHHHHHHhhccCcEE
Q 001708 956 TVRCIRSLRAEVLGKQKNERLPA---IAFCQTKGVSEIIRSHELEIVTLSTSSSLK 1008 (1022)
Q Consensus 956 iv~~iRslr~~~~~k~i~~~~~v---~i~~~~~~~~~~l~~~~~~I~~L~~v~~v~ 1008 (1022)
++..+|++|++. +++.+.++ +|.+.+ +..+.++.+.+.|+.++||++|.
T Consensus 806 ii~~~r~~r~~~---~i~~~~pl~~~~v~~~~-~~~~~~~~~~~~i~~~~nv~~v~ 857 (975)
T PRK06039 806 IVSLGRSARKKA---GIKVRQPLSKITVAEDE-EVAEALERYEDLIKDELNVKEVP 857 (975)
T ss_pred HHHHHHHHHHHc---CCCCCCccceEEEecCH-HHHHHHHHHHHHHHHHhCcccch
Confidence 999999999998 88656543 343333 35567888899999999999874
No 11
>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.9e-175 Score=1577.67 Aligned_cols=758 Identities=29% Similarity=0.497 Sum_probs=677.7
Q ss_pred cCCCCCCCCcccccchhhhcCCCChhHHHHHHHHHHHcCCcccCCC---CCCCcEEEECCCCCCCCCCCcchhHHHHHHH
Q 001708 126 FVDPETPLGEKKRMSKQMAKEYNPSSVEKSWYSWWENSGYFIADNK---SSKPSFVIVLPPPNVTGALHIGHALTTAIQD 202 (1022)
Q Consensus 126 ~~~~~t~~~~k~~~~~~~~~~y~p~~vE~~w~~~W~~~~~f~~~~~---~~k~~f~i~~pPPy~nG~LHiGHal~~~i~D 202 (1022)
+++|+|.|+||.|+. .+|++|+++|+++++|++..+ +++|+|+++||||||||.+|||||+|++|+|
T Consensus 7 l~lp~T~fpmr~~l~----------~~E~~i~~~W~e~~iy~k~~~~~~~g~~~FvfhDGPPyANG~iHiGHalnKilKD 76 (933)
T COG0060 7 LNLPKTDFPMRANLP----------KKEPKILKFWEENDIYEKIREERNKGKPKFVLHDGPPYANGNIHIGHALNKILKD 76 (933)
T ss_pred ccCccCCCCccCChh----------hcCHHHHHHHHHhhHHHHHHHHHhCCCCcEEEeCCCCCCCCCcchhhhHHHhhhh
Confidence 899999999998875 699999999999999998762 6788999999999999999999999999999
Q ss_pred HHHHHHHhCCCeeeeeccCCccChhHHHHHHHHHHHHhCCCccccChHHHHHHHHHHHHHHHHHHHHHHHHhccccccCC
Q 001708 203 TIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWKWKDEYGGTILRQQRRLGASLDWSR 282 (1022)
Q Consensus 203 ii~Ry~rm~G~~Vl~~pG~D~~Glp~q~~vEk~l~~~~~~~~~~~g~e~f~~~~~~~~~~~~~~i~~ql~rlG~s~DW~r 282 (1022)
||.||++|+||+|.++|||||||||||..||++++. .+....++|.++|+++|++++.++.+.++++|+|||++.||++
T Consensus 77 iI~Ry~~m~G~~v~~~pGWDcHGLPIE~~vek~lg~-~k~~i~~~~~~efr~~Cr~~a~~~v~~q~~~f~RLGv~~Dw~n 155 (933)
T COG0060 77 IIVRYKTMQGYDVPYVPGWDCHGLPIELKVEKKLGI-GKKDIESFGVEEFREKCREFALEQVDEQKEQFKRLGVWGDWEN 155 (933)
T ss_pred hhhhhhcccCCcCCCCCCCcCCCchHHHHHHHHhCC-CcchhhhcCHHHHHHHHHHHHHHHHHHHHHHHHhheEeeccCC
Confidence 999999999999999999999999999999999865 4455677999999999999999999999999999999999999
Q ss_pred ccccCChhhHHHHHHHHHHHHHcCcEEEcceeeeecCCCCccccccccccccCCCceEEeecCccccccceeeEeEeeec
Q 001708 283 ECFTMDEKRSKAVTEAFVRLYKEGLIYRDLRLVNWDCVLRTAISDIEVDYVDIPKREMRNVPGYEKQVEFGVLTSFAYPL 362 (1022)
Q Consensus 283 ~~~T~d~~~~~~v~~~F~~L~ekGlIyr~~~~V~W~p~~~TaLsd~EVe~~~~~~~t~~~vp~y~~~~e~g~l~~~~y~l 362 (1022)
+|.|||+.|++.++++|.+|+++||||||.|||+|||+|+||||++||+|.++.++++ +++||+
T Consensus 156 pY~Tmd~~ye~~~~~~f~~~~~kGllyrg~Kpv~wsp~c~TaLAeaEvey~d~~dpSI----------------yV~F~v 219 (933)
T COG0060 156 PYKTMDPSYEESVWWAFKELYEKGLLYRGYKPVPWSPRCETALAEAEVEYGDVKDPSI----------------YVKFPV 219 (933)
T ss_pred CeecCCHHHHHHHHHHHHHHHHCCCeecCCeeeeecCCCCcchhhhhhcccccCCceE----------------EEEEEe
Confidence 9999999999999999999999999999999999999999999999999999888764 578888
Q ss_pred CC----CcceEEEeeccccccccCcEEEEcCCccc----------------------------c--------ccccCCee
Q 001708 363 EG----GLGEIVVATTRVETMLGDTAIAIHPEDAR----------------------------Y--------SHLHGKFA 402 (1022)
Q Consensus 363 ~~----~~~~l~v~TTrPeTl~g~~avaV~P~d~r----------------------------y--------~~L~G~~~ 402 (1022)
.+ .+.+|+||||||||||+|.||||||+.++ | ++|.|..|
T Consensus 220 ~~~~~~~~~~lviWTTTPWTLPaN~aiav~pd~~Y~lv~~~~~~~IlA~~lve~~~~~~~~~~~~vl~~~kG~~Leg~~y 299 (933)
T COG0060 220 KDEGLDENAYLVIWTTTPWTLPANLAIAVHPDLDYVLVEVNGEKLILAKALVESVAKKAGVEDYEVLETFKGSELEGLRY 299 (933)
T ss_pred ccCCCCCCcEEEEEeCCCCCchhcceeEeCCCcceEEEEECCEEEEEhHHHHHHHHHHcCCcceEEeEEeehhhhCCCEe
Confidence 64 46899999999999999999999999641 1 37899999
Q ss_pred ecCCCC----CccceEeCCccccCCCCCCceecCCCCCcchHHHHHHcC-CceeeeeCCCCccccCCCCCCCCCChhhHH
Q 001708 403 IHPFNG----RKIPIICDAILVDPKFGTGAVKITPAHDPNDFDVGKRHN-LEFINIFTDDGKINSNGGLEFEGMPRFKAR 477 (1022)
Q Consensus 403 ~~P~~~----~~~pIi~~~~~V~~~~GTG~V~~~PaH~~~Dy~~~~~~~-L~~i~iid~~G~~~e~~g~~f~G~~~~~ar 477 (1022)
.|||.+ +..||+.++ ||+.+.|||+||+|||||++||.+|+++| ||++++||++|+|+++++ .|.|+.++||+
T Consensus 300 ~hPf~~~~~~~~~~v~~gd-~VT~d~GTG~VHtAPghGeeDy~vg~~~g~l~v~~pVD~~G~yt~~~~-~~~G~~v~dAn 377 (933)
T COG0060 300 EHPFYDFVYDRAFPVILGD-HVTLDDGTGLVHTAPGHGEEDYEVGKKYGLLEVLNPVDDNGRYTEEAP-KYEGLFVKDAN 377 (933)
T ss_pred eCCcccccccceeeEEecC-eEecCCCccceecCCCCCHHHHHHHHHcCCcCCccccCCCccccccch-hhCCceeccCC
Confidence 999985 899999999 59999999999999999999999999999 799999999999999998 99999999999
Q ss_pred HHHHHHHHHcCCccccccccccccccccCCCceecccccccceechHHHHHHHHhhhccCCCceEEeccccHHHHHHHHh
Q 001708 478 EAVNEALKKKGLYRGAKDNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKLELIPRQYTAEWRRWLE 557 (1022)
Q Consensus 478 ~~vi~~L~~~gll~~~~~~~~~~p~c~Rs~~~i~~~~~~QWFi~~~~l~~~al~~v~~~~~~~i~~~P~~~~~~~~~wl~ 557 (1022)
+.||+.|+++|+|++.+.+.|+|||||||++||+++.+||||++|+++++++++++ .+++|+|++.++|+.+||+
T Consensus 378 ~~Ii~~Lk~~g~Ll~~e~i~HsYPhcWR~ktPlIyRAt~QWFi~v~~~r~~~l~~i-----~~v~w~P~~~~~R~~~mve 452 (933)
T COG0060 378 KKIIEDLKEKGNLLKSEKIEHSYPHCWRTKTPLIYRATPQWFVSVDKLRDKMLKEI-----NKVNWVPDWGKNRFGNMVE 452 (933)
T ss_pred HHHHHHHHhCCceeeeeeEEeCCCcccCCCCeeEEeecchheeEHHHHHHHHHHHH-----hcceEEChhHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999988 4999999999999999999
Q ss_pred hccCccceeccCCCCccCcceeccCchhhhc---c---C------CCCcceEEecCHHHHHHHHhhhcCCCCcccccCCC
Q 001708 558 AIRDWCVSRQLWWGHQIPAWYVTLEDDELKE---L---G------SYNDHWIVARDEKEALAVANKKFSGKKFEMCQDPD 625 (1022)
Q Consensus 558 ~l~DWcISRQ~~WG~pIP~~~~~~~~~~~~~---~---~------~~~~~w~~~~~~~ea~~~~~~~~~~~~~~~~~d~D 625 (1022)
|++||||||||+||+|||+|+|+.+++.... . . ...+.|.... .. ..-..|+.++.+++|.+|
T Consensus 453 ~r~DW~ISRQR~WGvPiPi~~~~~~g~~~~~~~El~e~~~~~~~~~g~~~w~~~~-id----el~~~~~~~g~~~~rv~D 527 (933)
T COG0060 453 NRPDWCISRQRYWGVPIPVWYCKETGEILVITEELEELVGQLVEEKGIDDWHRPD-ID----ELLPPCPEDGKEYRRVPD 527 (933)
T ss_pred CCCcceeeccccCCCceeEEEECCCCCeeccHHHHHHHHHHHhhhcCchhhhccc-hH----hhcCCCCCCcceeEecCc
Confidence 9999999999999999999999877543210 0 0 0011121100 00 000112244558999999
Q ss_pred cEEEEeccCccccccccCCCCChhhhhcCCcCcccccccccchHHHHHHHHHhhhcCCCCceEEEeccceeCCCCcccee
Q 001708 626 VLDTWFSSGLFPLSVLGWPDDTDDLKAFYPTSVLETGHDILFFWVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSK 705 (1022)
Q Consensus 626 vlDtWFdSgl~p~s~lg~p~~~~d~~~~~P~dl~~~G~Dil~fW~a~m~~~~~~l~~~~Pfk~V~~Hg~v~D~~GrKMSK 705 (1022)
|||||||||.+|.++++ |.+...|..++ +|++.+|+||+||||++++++|++++|++||++|++|||++|++|+||||
T Consensus 528 vlDVWFDSGs~~~a~~~-~~~~~~~~~~~-aD~~lEGsDQ~RGWF~Ssl~~s~a~~~~aPYk~vltHGfvlDe~GrKMSK 605 (933)
T COG0060 528 VLDVWFDSGSTPYAVLH-PRENLKFPALF-ADFYLEGSDQTRGWFYSSLLTSTALFGRAPYKNVLTHGFVLDEKGRKMSK 605 (933)
T ss_pred ceEEEEcCCCCcccccC-CcccccCcccc-CcEEEEeccccchhHHHHHHHHHHHcCCchHHHHhhcccEECCCCCCccc
Confidence 99999999999999998 77654444444 59999999999999999999999999999999999999999999999999
Q ss_pred cCCcccCcchhhccccchhHHHhhhcCCCChHHHHHHHhcccCCCCCCCCCCCchHHHHHHHhccCCCcccccchhhhHH
Q 001708 706 SLGNVIDPLEVINGISLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLDIQRVVG 785 (1022)
Q Consensus 706 SlGNvIdP~dvI~g~~l~~l~~~l~~~nl~~~e~~~a~~~~~~~~~~~i~~~GaDaLR~~L~~~~~~~~Dinf~~~~~~~ 785 (1022)
|+||+|+|.+|++ +||||+||||+++.. .+.|+.|+.+.++.
T Consensus 606 SlGN~v~P~~V~~-------------------------------------~yGADiLRLwv~ssd-~~~dl~~s~~il~~ 647 (933)
T COG0060 606 SLGNVVDPQDVID-------------------------------------KYGADILRLWVASSD-YWEDLRFSDEILKQ 647 (933)
T ss_pred cCCCcCCHHHHHH-------------------------------------hhCchheeeeeeecC-chhccccCHHHHHH
Confidence 9999999999999 999999999998765 78899999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCCCC-CCCCCCChhhHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHhhhhHH
Q 001708 786 YRQWCNKLWNAVRFSMSKLGEGFVPPLK-LHPHNLPFSCKWILSVLNKAISRTASSLNSYEFSDAASTVYSWWQYQFCDV 864 (1022)
Q Consensus 786 ~r~f~nkl~N~~rf~l~~l~~~~~p~~~-~~~~~~~~~D~wil~~L~~~~~~v~~a~e~~~f~~a~~~i~~f~~~~l~~~ 864 (1022)
.++..++|||++||+++++.+ |+|... +....+..+|||||++|+.+++.++++|++|+|+++++.+++|+..+|++|
T Consensus 648 ~~~~~r~irNt~rF~l~nl~~-fdp~~~~~~~~~~~~~Drwil~rl~~l~~~v~eaye~y~f~~v~~~l~~F~~~dLS~~ 726 (933)
T COG0060 648 VREVYRKIRNTYRFLLGNLDD-FDPKKDAVLPEELRELDRWILSRLNSLVKEVREAYENYDFHKVVRALMNFVSEDLSNW 726 (933)
T ss_pred HHHHHHHHHHHHHHHHHhccC-CCccccccchhhcchhHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhHH
Confidence 999999999999999999865 998754 344477889999999999999999999999999999999999999999999
Q ss_pred HHHhhcccccCCCcccHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHhCCCCCCCCCCCCeeeccCCCCCCCCC--
Q 001708 865 FIEAIKPYFAGDNPAFASERSAAQHVLWVCLETGLRLLHPFMPFVTEELWQRLPQPKGCATKESIMLCEYPSAVEGWT-- 942 (1022)
Q Consensus 865 Yle~~K~~l~~~~~~~~~~r~~a~~~L~~~L~~~l~LL~PfmPfitEelwq~L~~~~~~~~~~SI~~~~~P~~~~~~~-- 942 (1022)
||+.+|+++|++.. .+.+|++|++|||++|..++++|+||+||+||||||.|+... ..+|||++.||...+.+.
T Consensus 727 Yld~~kdr~y~~~~-~s~~rraa~~~Ly~il~~l~~~lAPilPftaEeiw~~l~~~~---~~eSVhl~~~p~~~~~~~~~ 802 (933)
T COG0060 727 YLDIIKDRLYTEAA-DSPDRRAAQTTLYHILKALVRLLAPILPFTAEEIWQNLPGER---KEESVHLEDWPEVDEELIDV 802 (933)
T ss_pred HHHHHHHHhhhcCC-CCHHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHhCccCC---CCceeEeccCCcccccccch
Confidence 99999999997621 122899999999999999999999999999999999998632 268999999999988776
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHh
Q 001708 943 DERAEFEMDLVESTVRCIRSLRAEV 967 (1022)
Q Consensus 943 ~~~~e~~~~~v~~iv~~iRslr~~~ 967 (1022)
+..+...++..+++...++.+....
T Consensus 803 ~~~~~~r~~~~~k~R~~v~~~l~~~ 827 (933)
T COG0060 803 EAALAARWEALLKLRDPVNKALEAA 827 (933)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666777777766666555443
No 12
>PLN02882 aminoacyl-tRNA ligase
Probab=100.00 E-value=4.8e-173 Score=1631.67 Aligned_cols=789 Identities=23% Similarity=0.390 Sum_probs=691.8
Q ss_pred cCCCChhHHHHHHHHHHHcCCcccCCC--CCCCcEEEECCCCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeeeeeccCC
Q 001708 145 KEYNPSSVEKSWYSWWENSGYFIADNK--SSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMD 222 (1022)
Q Consensus 145 ~~y~p~~vE~~w~~~W~~~~~f~~~~~--~~k~~f~i~~pPPy~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG~D 222 (1022)
+.|||.++|.+|+++|+++++|++..+ +++|+|+|++|||||||.||||||+|++++|+++||+||+||+|+|+||||
T Consensus 6 ~~~~~~~~E~~~~~~W~e~~~f~~~~~~~~~~~~f~~~dgPPyanG~~HiGH~~~~~ikDii~Ry~rm~G~~V~~~~GwD 85 (1159)
T PLN02882 6 KDFSFPKQEEKILSLWSEIDAFKTQLKRTEGLPEYIFYDGPPFATGLPHYGHILAGTIKDIVTRYQSMTGHHVTRRFGWD 85 (1159)
T ss_pred CCCCHHHHHHHHHHHHHhCCCccccccccCCCCCEEEeCCCCCCCCcchhhHHHHHHHHHHHHHHHHcCCCcccccCccC
Confidence 569999999999999999999998754 467889999999999999999999999999999999999999999999999
Q ss_pred ccChhHHHHHHHHHHHHhCCCccccChHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHH
Q 001708 223 HAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRL 302 (1022)
Q Consensus 223 ~~Glp~q~~vEk~l~~~~~~~~~~~g~e~f~~~~~~~~~~~~~~i~~ql~rlG~s~DW~r~~~T~d~~~~~~v~~~F~~L 302 (1022)
|||||||.+||++++...+....++|+++|+++|++|+.+|.+.+++|+++||+|+||+++|+||||.|+++|+|+|.+|
T Consensus 86 ~hGlPiE~~vek~lgi~~~~~i~~~g~~~f~~~c~~~~~~~~~~~~~~~~rlG~~~D~~~~y~T~d~~~~~~v~~~f~~l 165 (1159)
T PLN02882 86 CHGLPVEYEIDKKLGIKRRDDVLKMGIDKYNEECRSIVTRYSKEWEKTVTRTGRWIDFENDYKTMDPKFMESVWWVFKQL 165 (1159)
T ss_pred CCCcHHHHHHHHHcCCCCccchhhcCHHHHHHHHHHHHHHHHHHHHHHHHHcCcEEECCCCcCcCCHHHHHHHHHHHHHH
Confidence 99999999999876322222344699999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCcEEEcceeeeecCCCCcccccccc--ccccCCCceEEeecCccccccceeeEeEeeecCCCc--ceEEEeeccccc
Q 001708 303 YKEGLIYRDLRLVNWDCVLRTAISDIEV--DYVDIPKREMRNVPGYEKQVEFGVLTSFAYPLEGGL--GEIVVATTRVET 378 (1022)
Q Consensus 303 ~ekGlIyr~~~~V~W~p~~~TaLsd~EV--e~~~~~~~t~~~vp~y~~~~e~g~l~~~~y~l~~~~--~~l~v~TTrPeT 378 (1022)
+++|||||+.++|+|||.|+|+|||+|+ +|+++.+++ ++++||+.++. .+++||||||||
T Consensus 166 ~~kGliyr~~~~v~wcp~~~TaLs~~E~~~~Yk~~~~~s----------------i~v~F~l~~~~~~~~l~iwTTtPwT 229 (1159)
T PLN02882 166 FEKGLVYKGFKVMPYSTACKTPLSNFEAGLNYKDVSDPA----------------VMVSFPIVGDPDNASFVAWTTTPWT 229 (1159)
T ss_pred HHCCCEEecceeEeecCCCCCCcchhhhhhhcccCCCcE----------------EEEEEEecCCCCCcEEEEEeCCccc
Confidence 9999999999999999999999998888 788887654 46889987643 699999999999
Q ss_pred cccCcEEEEcCCcc------------------cc-------------------------------ccccCCeeecCCC--
Q 001708 379 MLGDTAIAIHPEDA------------------RY-------------------------------SHLHGKFAIHPFN-- 407 (1022)
Q Consensus 379 l~g~~avaV~P~d~------------------ry-------------------------------~~L~G~~~~~P~~-- 407 (1022)
||||+||||||+++ || ++|+|++|.|||.
T Consensus 230 Lpsn~Al~VnP~~~Y~~v~~~~~~~~~i~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~G~~L~g~~y~p~~~~~ 309 (1159)
T PLN02882 230 LPSNLALCVNPNFTYVKVRNKYTGKVYIVAESRLSALPTAKPKSKKGSKPENAAEGYEVLAKVPGSSLVGKKYEPLFDYF 309 (1159)
T ss_pred cccCeEEEECCCCcEEEEEecCCCeEEEEhHHHHHHHHhhhhcccccccccccccccEEEEEecchhhcCCEEECCcccc
Confidence 99999999999975 22 1689999988772
Q ss_pred ----CCccceEeCCccccCCCCCCceecCCCCCcchHHHHHHcCC-----ceeeeeCCCCccccCCCCCCCCCChhhHHH
Q 001708 408 ----GRKIPIICDAILVDPKFGTGAVKITPAHDPNDFDVGKRHNL-----EFINIFTDDGKINSNGGLEFEGMPRFKARE 478 (1022)
Q Consensus 408 ----~~~~pIi~~~~~V~~~~GTG~V~~~PaH~~~Dy~~~~~~~L-----~~i~iid~~G~~~e~~g~~f~G~~~~~ar~ 478 (1022)
++.+|||+|++ |++++|||+||+|||||++||++|++||| +++++||++|+|++++| +|+||.+++||+
T Consensus 310 ~~~~~~~~~Vi~~~~-V~~~~GTGiVh~aPahG~~Dy~v~~~~gl~~~~~~~~~~vd~~G~~~~~~~-~~~G~~v~eA~~ 387 (1159)
T PLN02882 310 SEFSDTAFRVVADDY-VTDDSGTGVVHCAPAFGEDDYRVCLANGIIEKGGNLPVPVDDDGCFTEKVT-DFSGRYVKDADK 387 (1159)
T ss_pred ccccCceEEEEccCc-cCCCCCcceeEecCCCChhHHHHHHHcCCCccccCccceECCCceEccCCc-ccCCCCHHHhhH
Confidence 46899999995 99999999999999999999999999999 79999999999999998 899999999999
Q ss_pred HHHHHHHHcCCccccccccccccccccCCCceecccccccceechHHHHHHHHhhhccCCCceEEecccc-HHHHHHHHh
Q 001708 479 AVNEALKKKGLYRGAKDNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKLELIPRQY-TAEWRRWLE 557 (1022)
Q Consensus 479 ~vi~~L~~~gll~~~~~~~~~~p~c~Rs~~~i~~~~~~QWFi~~~~l~~~al~~v~~~~~~~i~~~P~~~-~~~~~~wl~ 557 (1022)
.|++.|+++|++++.+++.|+||+|||||+||++++++||||+++++++++++++ ++++|+|++. +++|.+||+
T Consensus 388 ~Ii~~Lk~~g~L~~~~~~~Hsyp~cwR~~tpli~~a~~qWFi~~~~~k~~~l~~~-----~~i~w~P~~~~~~r~~~wl~ 462 (1159)
T PLN02882 388 DIIAAIKAKGRLVKSGSITHSYPFCWRSDTPLIYRAVPSWFVKVEEIKDRLLENN-----KQTYWVPDYVKEKRFHNWLE 462 (1159)
T ss_pred HHHHHHHHCCCccceeeeecCCCEeeCCCCEEEEEecceeEEEcHHHHHHHHHhh-----CCcEEECCcchhhHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999976 7899999999 589999999
Q ss_pred hccCccceeccCCCCccCcceeccCchhhhccCCCCcceEEecCHHHHHHHHhh-------------hcCC----CCccc
Q 001708 558 AIRDWCVSRQLWWGHQIPAWYVTLEDDELKELGSYNDHWIVARDEKEALAVANK-------------KFSG----KKFEM 620 (1022)
Q Consensus 558 ~l~DWcISRQ~~WG~pIP~~~~~~~~~~~~~~~~~~~~w~~~~~~~ea~~~~~~-------------~~~~----~~~~~ 620 (1022)
|++|||||||||||||||+|+|+.++ .+++..+.++....... .+|. ....+
T Consensus 463 ~~~DW~ISRqR~WGtPIPvw~~~~~~-----------~~~~~~s~~el~~~~~~~~~dlh~~~id~i~~p~~~~~~~~~~ 531 (1159)
T PLN02882 463 NARDWAVSRSRFWGTPLPIWISDDGE-----------EVVVIGSIAELEKLSGVKVTDLHRHFIDHITIPSSRGPEFGVL 531 (1159)
T ss_pred cCcccceeeccccCCccceEEeCCCC-----------eEEecCcHHHHHHHhCCchhhccccchhhhccccccCCchhce
Confidence 99999999999999999999996542 23333343333222100 0121 12369
Q ss_pred ccCCCcEEEEeccCccccccccCCCC-ChhhhhcCCcCcccccccccchHHHHHHHHHhhhcCCCCceEEEeccceeCCC
Q 001708 621 CQDPDVLDTWFSSGLFPLSVLGWPDD-TDDLKAFYPTSVLETGHDILFFWVARMVMLGIKLGGEVPFTKVYLHPMIRDAH 699 (1022)
Q Consensus 621 ~~d~DvlDtWFdSgl~p~s~lg~p~~-~~d~~~~~P~dl~~~G~Dil~fW~a~m~~~~~~l~~~~Pfk~V~~Hg~v~D~~ 699 (1022)
+|++||||||||||+||++++|||.+ +++|+.+||+|++++|+||+||||++|+++|++++|+.||++|++||||+|++
T Consensus 532 ~r~~dVlD~WFdSg~~p~a~~~~p~e~~~~f~~~~PaD~i~eG~Dq~RgWf~~ll~~s~~l~~~~pfk~VivhG~vlde~ 611 (1159)
T PLN02882 532 RRVDDVFDCWFESGSMPYAYIHYPFENKELFEKNFPADFVAEGLDQTRGWFYTLMVLSTALFDKPAFKNLICNGLVLAED 611 (1159)
T ss_pred EecCceeeeeeccCccHHHHcCCcccChhHhhccCCceEEEEecchhhhHHHHHHHHHHHhcCCCCcceeEEccEEECCC
Confidence 99999999999999999999999974 56789999999999999999999999999999999999999999999999999
Q ss_pred CccceecCCcccCcchhhccccchhHHHhhhcCCCChHHHHHHHhcccCCCCCCCCCCCchHHHHHHHhccC-CCccccc
Q 001708 700 GRKMSKSLGNVIDPLEVINGISLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTA-QSDKINL 778 (1022)
Q Consensus 700 GrKMSKSlGNvIdP~dvI~g~~l~~l~~~l~~~nl~~~e~~~a~~~~~~~~~~~i~~~GaDaLR~~L~~~~~-~~~Dinf 778 (1022)
|+|||||+||||||.++|+ +||||+|||||++... .++|++|
T Consensus 612 G~KMSKSlGNvIdP~evi~-------------------------------------~YGADaLR~~Ll~s~~~~~~d~~f 654 (1159)
T PLN02882 612 GKKMSKSLKNYPDPNEVID-------------------------------------KYGADALRLYLINSPVVRAEPLRF 654 (1159)
T ss_pred CCCcccCCCCCCCHHHHHH-------------------------------------HhCcHHHHHHHHhCCcccCcCccc
Confidence 9999999999999999999 8999999999996543 3788999
Q ss_pred chhhhHHH-HHHHHHHHHHHHHHHhhcCC-------CCCCCCCCCC-CCCChhhHHHHHHHHHHHHHHHhhhhcCCHHHH
Q 001708 779 DIQRVVGY-RQWCNKLWNAVRFSMSKLGE-------GFVPPLKLHP-HNLPFSCKWILSVLNKAISRTASSLNSYEFSDA 849 (1022)
Q Consensus 779 ~~~~~~~~-r~f~nkl~N~~rf~l~~l~~-------~~~p~~~~~~-~~~~~~D~wil~~L~~~~~~v~~a~e~~~f~~a 849 (1022)
+.+.+.+. +++++++||+++|+++++.+ +|.|...... .....+|+||+++++.+++.+.++|++|+|++|
T Consensus 655 s~~~v~~~~~~~l~kl~Na~rfl~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~D~wIls~l~~li~~v~~~me~y~f~~A 734 (1159)
T PLN02882 655 KEEGVFGVVKDVFLPWYNAYRFLVQNAKRLEVEGGAPFVPLDLAKLQNSANVLDRWINSATQSLVKFVREEMGAYRLYTV 734 (1159)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccCCCccccccccccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHH
Confidence 99998764 67999999999999987642 3554311111 134678999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhHHHHHhhcccccCCC-cccHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHhCCCCCCCCCCCC
Q 001708 850 ASTVYSWWQYQFCDVFIEAIKPYFAGDN-PAFASERSAAQHVLWVCLETGLRLLHPFMPFVTEELWQRLPQPKGCATKES 928 (1022)
Q Consensus 850 ~~~i~~f~~~~l~~~Yle~~K~~l~~~~-~~~~~~r~~a~~~L~~~L~~~l~LL~PfmPfitEelwq~L~~~~~~~~~~S 928 (1022)
++.|++|+ .++||+||+.+|||++.++ .. ++++++.||+++|..+++||||||||+||+|||+|+.... ...+|
T Consensus 735 ~~~I~~Fv-~~lsN~YIe~~Kprl~~~~~~~---~~~~al~tL~~vL~~l~~LLaPfmPf~aEeI~q~L~~~~~-~~~~S 809 (1159)
T PLN02882 735 VPYLVKFI-DNLTNIYVRFNRKRLKGRTGEE---DCRTALSTLYNVLLTSCKVMAPFTPFFTEVLYQNLRKVLP-GSEES 809 (1159)
T ss_pred HHHHHHHH-HHHhHHHHHhCCHhhhCCCChH---HHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHhccccC-CCCCc
Confidence 99999998 4799999999999998653 33 6788999999999999999999999999999999975211 12479
Q ss_pred eeeccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcc--eEE-EEecCchhH-HHHHHHHHHHHHhhcc
Q 001708 929 IMLCEYPSAVEGWTDERAEFEMDLVESTVRCIRSLRAEVLGKQKNERL--PAI-AFCQTKGVS-EIIRSHELEIVTLSTS 1004 (1022)
Q Consensus 929 I~~~~~P~~~~~~~~~~~e~~~~~v~~iv~~iRslr~~~~~k~i~~~~--~v~-i~~~~~~~~-~~l~~~~~~I~~L~~v 1004 (1022)
||++.||++++.+.|+++|..|+.+++++..+|++|++. +++.+. ... +...+.+.. +++..+.+.|+.++||
T Consensus 810 Vh~~~~P~~~~~~~d~~le~~~~~~~~ii~~~r~~r~~~---~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~i~~e~nv 886 (1159)
T PLN02882 810 IHYCSFPQVDEGELDERIEQSVSRMQTVIELARNIRERH---NKPLKTPLKEMVVVHPDAEFLDDITGKLKEYVLEELNV 886 (1159)
T ss_pred eeecCCCCcchhhcchhHHHHHHHHHHHHHHHHHHHHHc---CCCCCCccceeeEecCCHHHHHHHHHHHHHHHHHhhCc
Confidence 999999999999999999999999999999999999987 654333 333 333333333 3346888999999999
Q ss_pred CcEEEecC
Q 001708 1005 SSLKALSF 1012 (1022)
Q Consensus 1005 ~~v~i~~~ 1012 (1022)
++|++..+
T Consensus 887 ~~v~~~~~ 894 (1159)
T PLN02882 887 RSLVPCND 894 (1159)
T ss_pred ceEEEeec
Confidence 99998754
No 13
>PLN02843 isoleucyl-tRNA synthetase
Probab=100.00 E-value=5.1e-173 Score=1616.74 Aligned_cols=794 Identities=25% Similarity=0.395 Sum_probs=685.9
Q ss_pred ChhHHHHHHHHHHHcCCcccCCC-CCCCcEEEECCCCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeeeeeccCCccChh
Q 001708 149 PSSVEKSWYSWWENSGYFIADNK-SSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIA 227 (1022)
Q Consensus 149 p~~vE~~w~~~W~~~~~f~~~~~-~~k~~f~i~~pPPy~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG~D~~Glp 227 (1022)
...+|.+|+++|+++++|++..+ ..+++|+|++|||||||.||||||+|++++|+++||+||+||+|+|+|||||||||
T Consensus 5 ~~~~E~~~~~~W~~~~~y~~~~~~~~~~~f~i~~~PPy~nG~lHiGHa~~~~lkDii~Ry~rm~G~~v~~~pG~D~hGlp 84 (974)
T PLN02843 5 SVTREPEIQKLWEENQVYKRVSDRNNGESFTLHDGPPYANGDLHIGHALNKILKDFINRYQLLQGKKVHYVPGWDCHGLP 84 (974)
T ss_pred hHHhhHHHHHHHHHCCCccccccccCCCCEEEeCCCCCCCCCcchhHHHHHHHHHHHHHHHHhcCCccccCCccCCCCcH
Confidence 34799999999999999998764 34567999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCccccChHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHHHcCc
Q 001708 228 TQVVVEKKLMRERKLTRHDIGREQFVSEVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGL 307 (1022)
Q Consensus 228 ~q~~vEk~l~~~~~~~~~~~g~e~f~~~~~~~~~~~~~~i~~ql~rlG~s~DW~r~~~T~d~~~~~~v~~~F~~L~ekGl 307 (1022)
||.+||+++.. .+++++++++|+++|++|+.++++.|++||++||+++||+++|+||||.|+++|+++|.+|+++||
T Consensus 85 ie~~vek~l~~---~~~~~~~~~~f~~~c~~~~~~~~~~~~~~~~~lG~~~Dw~~~y~T~d~~~~~~v~~~f~~l~~~Gl 161 (974)
T PLN02843 85 IELKVLQSLDQ---EARKELTPIKLRAKAAKFAKKTVDTQRESFKRYGVWGDWENPYLTLDPEYEAAQIEVFGQMFLNGY 161 (974)
T ss_pred HHHHHHHHhch---hhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCceecCCCCccCCHHHHHHHHHHHHHHHHCCC
Confidence 99999988732 266789999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcceeeeecCCCCccccccccccccC-CCceEEeecCccccccceeeEeEeeecCCC-------------cceEEEee
Q 001708 308 IYRDLRLVNWDCVLRTAISDIEVDYVDI-PKREMRNVPGYEKQVEFGVLTSFAYPLEGG-------------LGEIVVAT 373 (1022)
Q Consensus 308 Iyr~~~~V~W~p~~~TaLsd~EVe~~~~-~~~t~~~vp~y~~~~e~g~l~~~~y~l~~~-------------~~~l~v~T 373 (1022)
|||+.+||+|||+|+|||||+||+|++. .++ .++++|++.++ +.+|+|||
T Consensus 162 Iyr~~kpV~Wcp~~~Talae~Evey~e~~~~~----------------s~yv~f~~~~~~~~~~~~~~~~~~~~~lviwT 225 (974)
T PLN02843 162 IYRGRKPVHWSPSSRTALAEAELEYPEGHVSK----------------SIYVAFPVVSPSETSPEELEEFLPGLSLAIWT 225 (974)
T ss_pred EEecceeeeecCCCCCcchHhHhcccCCccCc----------------eEEEEEEecCCccccccccccccccceEEEEe
Confidence 9999999999999999999999999974 333 34566766543 24899999
Q ss_pred ccccccccCcEEEEcCCcc-------------c-----------------------------------------------
Q 001708 374 TRVETMLGDTAIAIHPEDA-------------R----------------------------------------------- 393 (1022)
Q Consensus 374 TrPeTl~g~~avaV~P~d~-------------r----------------------------------------------- 393 (1022)
|||||||||+||||||+++ |
T Consensus 226 TtPwTlpan~AiaVnP~~~Y~~v~~~~~~~d~r~~~~~~~~~~~~~~~~~~~~~~iva~~l~~~~~~~~~~~~~~~~~~~ 305 (974)
T PLN02843 226 TTPWTMPANAAVAVNDKLQYSVVEVQSFSEDESTSGGNKKKRPGNVLKEQQKLFLIVATDLVPALEAKWGVKLVVLKTFP 305 (974)
T ss_pred CcchhhccCcEEEECCCCceEEEEeccccccccccccccccccccccccccCceEEeHHHHHHHHHHhhCCceEEEeeec
Confidence 9999999999999999954 2
Q ss_pred cccccCCeeecCCCCCccceEe-CCccccCCCCCCceecCCCCCcchHHHHHHcCCceeeeeCCCCccccCCCCCCCCCC
Q 001708 394 YSHLHGKFAIHPFNGRKIPIIC-DAILVDPKFGTGAVKITPAHDPNDFDVGKRHNLEFINIFTDDGKINSNGGLEFEGMP 472 (1022)
Q Consensus 394 y~~L~G~~~~~P~~~~~~pIi~-~~~~V~~~~GTG~V~~~PaH~~~Dy~~~~~~~L~~i~iid~~G~~~e~~g~~f~G~~ 472 (1022)
+++|+|++|.|||.++.+|||. ++ ||++++|||+||+|||||++||++|++|||+++++||++|+|++++| +|.|+.
T Consensus 306 g~~L~g~~~~~P~~~~~~pii~~~~-~V~~~~GTG~Vh~aPaHg~~Dy~~~~~~~l~~~~~vd~~G~~~~~~~-~~~G~~ 383 (974)
T PLN02843 306 GSDLEGCRYIHPLYNRESPVVIGGD-YITTESGTGLVHTAPGHGQEDYITGLKYGLPLLSPVDDAGKFTEEAG-QFSGLS 383 (974)
T ss_pred hHHcCCCEEECCCCCCceeEEecCC-ccCCCCCCCeEEeCCCCCHHHHHHHHHcCCCcccccCCCceEccCCc-ccCCcE
Confidence 2689999999999999999975 67 59999999999999999999999999999999999999999999988 899999
Q ss_pred hh-hHHHHHHHHHHHcCCccccccccccccccccCCCceecccccccceechHHHHHHHHhhhccCCCceEEeccccHHH
Q 001708 473 RF-KAREAVNEALKKKGLYRGAKDNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKLELIPRQYTAE 551 (1022)
Q Consensus 473 ~~-~ar~~vi~~L~~~gll~~~~~~~~~~p~c~Rs~~~i~~~~~~QWFi~~~~l~~~al~~v~~~~~~~i~~~P~~~~~~ 551 (1022)
++ +||+.|++.|+++|++++.+++.|+||||||||+||++++++||||+++.+++++++++ ++|+|+|++++++
T Consensus 384 v~~~a~~~Ii~~L~~~g~l~~~e~~~H~yp~cwR~~~pvi~r~t~QWFi~~~~~k~~al~~~-----~~v~~~P~~~~~r 458 (974)
T PLN02843 384 VLGEGNAAVVEALDEAGSLLMEEAYGHKYPYDWRTKKPTIFRATEQWFASVEGFRQAALDAI-----DKVKWIPAQGENR 458 (974)
T ss_pred ehhcchHHHHHHHHHCCCeeeeeeecCCCCccCCCCCeEEEEecCceeEeCHHHHHHHHHHH-----hccEEEChHHHHH
Confidence 98 89999999999999999999999999999999999999999999999999999999999 5799999999999
Q ss_pred HHHHHhhccCccceeccCCCCccCcceeccCchhhhc-----------cCCCCcceEEecCHHHHHHHHhhhcCCCCccc
Q 001708 552 WRRWLEAIRDWCVSRQLWWGHQIPAWYVTLEDDELKE-----------LGSYNDHWIVARDEKEALAVANKKFSGKKFEM 620 (1022)
Q Consensus 552 ~~~wl~~l~DWcISRQ~~WG~pIP~~~~~~~~~~~~~-----------~~~~~~~w~~~~~~~ea~~~~~~~~~~~~~~~ 620 (1022)
+.+||++++|||||||||||||||+|||..+++.+.. .....+.|+.. +.++.. ...+.++...+
T Consensus 459 ~~~~i~~~~DWcISRQr~WG~pIP~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~w~~~-~~~~l~---p~~~~~~~~~~ 534 (974)
T PLN02843 459 IRAMVSGRSDWCISRQRTWGVPIPVFYHVETKEPLMNEETIAHVKSIVAQKGSDAWWYM-DVEDLL---PEKYRDKASDY 534 (974)
T ss_pred HHHHHhcCcceeeeeccccccEEEEEEEcCCCCEeechhhHHHHHHHHHhhCCcccccC-CHHHhC---cccccCchhhh
Confidence 9999999999999999999999999999776543110 00122345432 222221 11122224468
Q ss_pred ccCCCcEEEEeccCccccccccCCCCChhhhhcCCcCcccccccccchHHHHHHHHHhhhcCCCCceEEEeccceeCCCC
Q 001708 621 CQDPDVLDTWFSSGLFPLSVLGWPDDTDDLKAFYPTSVLETGHDILFFWVARMVMLGIKLGGEVPFTKVYLHPMIRDAHG 700 (1022)
Q Consensus 621 ~~d~DvlDtWFdSgl~p~s~lg~p~~~~d~~~~~P~dl~~~G~Dil~fW~a~m~~~~~~l~~~~Pfk~V~~Hg~v~D~~G 700 (1022)
+|++||||||||||+++.+.+++. .+.+||+|++++|+||+||||++|++++++++|+.||++|++||+|+|.+|
T Consensus 535 ~k~~DvlDvWFdSg~~~~~~~~~~-----~~~~~PaDl~~eG~Di~rgWf~s~l~~~~~~~g~~Pfk~v~~HG~vld~~G 609 (974)
T PLN02843 535 EKGTDTMDVWFDSGSSWAGVLGSR-----EGLSYPADLYLEGSDQHRGWFQSSLLTSVATKGKAPYKSVLTHGFVLDEKG 609 (974)
T ss_pred EecccccccchhcCCChHHHhccc-----cccCCCceeeeeeccccchHHHHHHHHHHHhcCCCccceEEEeccEECCCC
Confidence 999999999999999887776532 134799999999999999999999999999999999999999999999999
Q ss_pred ccceecCCcccCcchhhccccchhHHHhhhcCCCChHHHHHHHhcccCCCCCCCCCCCchHHHHHHHhccCCCcccccch
Q 001708 701 RKMSKSLGNVIDPLEVINGISLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLDI 780 (1022)
Q Consensus 701 rKMSKSlGNvIdP~dvI~g~~l~~l~~~l~~~nl~~~e~~~a~~~~~~~~~~~i~~~GaDaLR~~L~~~~~~~~Dinf~~ 780 (1022)
+|||||+||||+|.++|+|+++ .+++|+||+|+||||+++ +..++|++|+.
T Consensus 610 ~KMSKSlGNvI~p~~vi~~~~~----------------------------~~~~~~yGaD~lR~~l~~-~~~~~d~~~s~ 660 (974)
T PLN02843 610 FKMSKSLGNVVDPRLVIEGGKN----------------------------QKQEPAYGADVLRLWVAS-VDYTGDVLIGP 660 (974)
T ss_pred CCcCCCCCCcCCHHHHHhhccc----------------------------cccccccChHHHHHHHHh-cccCCCceeCH
Confidence 9999999999999999997532 246789999999999986 55678999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHhh
Q 001708 781 QRVVGYRQWCNKLWNAVRFSMSKLGEGFVPPLKLHPHNLPFSCKWILSVLNKAISRTASSLNSYEFSDAASTVYSWWQYQ 860 (1022)
Q Consensus 781 ~~~~~~r~f~nkl~N~~rf~l~~l~~~~~p~~~~~~~~~~~~D~wil~~L~~~~~~v~~a~e~~~f~~a~~~i~~f~~~~ 860 (1022)
+.+...+++++||||++||+++++.+ |.|........+..+|+||+++|+++++.+.++|++|+|++|++.|++|++.+
T Consensus 661 ~~l~~~~~~~~kl~n~~rf~lgnl~~-~~~~~~~~~~~~~~~D~wiLskL~~li~~v~~aye~y~f~~A~~~i~~f~~~d 739 (974)
T PLN02843 661 QILKQMSDIYRKLRGTLRYLLGNLHD-WKPDNAVPYEDLPSIDKYALFQLENVVNEIEESYDNYQFFKIFQILQRFTIVD 739 (974)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCccC-CCcccccCccccCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999865 65522222334567899999999999999999999999999999999999999
Q ss_pred hhHHHHHhhcccccCCCcccHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHhCCCCCCCCCCCCeeeccCCCCCCC
Q 001708 861 FCDVFIEAIKPYFAGDNPAFASERSAAQHVLWVCLETGLRLLHPFMPFVTEELWQRLPQPKGCATKESIMLCEYPSAVEG 940 (1022)
Q Consensus 861 l~~~Yle~~K~~l~~~~~~~~~~r~~a~~~L~~~L~~~l~LL~PfmPfitEelwq~L~~~~~~~~~~SI~~~~~P~~~~~ 940 (1022)
+||+||+.+|||++.+... +..|++++.+|+.+|+.+++||||||||+|||||++|+...+....+||+++.||+.++.
T Consensus 740 lsn~Yie~~Kprly~~~~~-~~~r~~~qtvL~~iLe~l~~LLaPimPf~aEEiw~~L~~~~~~~~~~sv~~~~~P~~~~~ 818 (974)
T PLN02843 740 LSNFYLDVAKDRLYVGGTT-SFTRRSCQTVLAAHLLSLLRAIAPILPHLAEDAWQNLPFQEDGSAAESVFEAGWPTPNEE 818 (974)
T ss_pred HhHHHHHhcchhhhccCCC-HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhccccccCCCCCceEecCCCCCchh
Confidence 9999999999999876221 115778999999999999999999999999999999985211012469999999999887
Q ss_pred CCC--HHHHHHHHHH----HHHHHHHHHHHHHhccCCCC--CcceEEEEecCchhHHHHHH------HHHHHHHhhccCc
Q 001708 941 WTD--ERAEFEMDLV----ESTVRCIRSLRAEVLGKQKN--ERLPAIAFCQTKGVSEIIRS------HELEIVTLSTSSS 1006 (1022)
Q Consensus 941 ~~~--~~~e~~~~~v----~~iv~~iRslr~~~~~k~i~--~~~~v~i~~~~~~~~~~l~~------~~~~I~~L~~v~~ 1006 (1022)
+.| +.++..++.+ .++++++|++|++. .|+ .++.++|.+.+.+..+.++. ..+.|+.|++|++
T Consensus 819 ~~~~~~~~~~~~~~~~~~r~~v~~~l~~~r~~~---~i~~~~~~~v~l~~~~~~~~~~l~~~~~~~~~~~~l~~l~~vs~ 895 (974)
T PLN02843 819 WLSFPAEDVDFWSLLLEVRDEVNKVLESARNGK---LIGASLEAKVYLHASDASLAARLAELCGASNGADELRRIFITSQ 895 (974)
T ss_pred hcCchHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CCCcccceeEEEEeCCHHHHHHHHhhccccchHHHHHHHhccCc
Confidence 765 4444444444 44778889999886 674 45566776655545566766 2477999999999
Q ss_pred EEEec
Q 001708 1007 LKALS 1011 (1022)
Q Consensus 1007 v~i~~ 1011 (1022)
|+++.
T Consensus 896 v~~~~ 900 (974)
T PLN02843 896 VEVVS 900 (974)
T ss_pred eEeec
Confidence 99974
No 14
>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional
Probab=100.00 E-value=9.4e-173 Score=1614.74 Aligned_cols=790 Identities=25% Similarity=0.404 Sum_probs=696.1
Q ss_pred CcCCCCCCCCcccccchhhhcCCCChhHHHHHHHHHHHcCCcccCCC--CCCCcEEEECCCCCCCCCCCcchhHHHHHHH
Q 001708 125 EFVDPETPLGEKKRMSKQMAKEYNPSSVEKSWYSWWENSGYFIADNK--SSKPSFVIVLPPPNVTGALHIGHALTTAIQD 202 (1022)
Q Consensus 125 ~~~~~~t~~~~k~~~~~~~~~~y~p~~vE~~w~~~W~~~~~f~~~~~--~~k~~f~i~~pPPy~nG~LHiGHal~~~i~D 202 (1022)
.+++|+|.|+||.|+ .++|.+|+++|+++++|++..+ .++++|+|++|||||||.||||||+|++++|
T Consensus 12 tl~lp~t~f~m~~~~----------~~~E~~~~~~W~~~~~y~~~~~~~~~~~~f~l~dgPPyanG~lHiGHaln~~lkD 81 (961)
T PRK13804 12 TLNLPQTAFPMRAGL----------PQKEPEIQARWEEIDLYKKLREQAKGRPKFVLHDGPPYANGNIHIGHALNKILKD 81 (961)
T ss_pred hcCCCCCCCCCCCCh----------HHhHHHHHHHHHHCCCccccccccCCCCcEEEeCCCCCCCCCccHHHHHHHHHHH
Confidence 679999999999666 4699999999999999998653 4678999999999999999999999999999
Q ss_pred HHHHHHHhCCCeeeeeccCCccChhHHHHHHHHHHHHhCCCccccChHHHHHHHHHHHHHHHHHHHHHHHHhccccccCC
Q 001708 203 TIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWKWKDEYGGTILRQQRRLGASLDWSR 282 (1022)
Q Consensus 203 ii~Ry~rm~G~~Vl~~pG~D~~Glp~q~~vEk~l~~~~~~~~~~~g~e~f~~~~~~~~~~~~~~i~~ql~rlG~s~DW~r 282 (1022)
+++||+||+||+|+|+|||||||||||.+||+++ ..+|++++++++++|+++|++|+.++++.|++||+|||+++||+|
T Consensus 82 ii~Ry~rm~G~~v~~~pGwD~hGlPiE~~vek~~-~~~~~~~~~~~~~~f~~~c~~~a~~~i~~~~~~~~rlG~~~Dw~~ 160 (961)
T PRK13804 82 VIVRSKQMLGFDANYVPGWDCHGLPIEWKIEEKY-RAKGKNKDEVPVAEFRKECREYALSWIDVQREEFKRLGVLGDWDN 160 (961)
T ss_pred HHHHHHHhcCCcccCCCCcCCCCcHHHHHHHHhh-hhcCCChHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCceecCCC
Confidence 9999999999999999999999999999999887 345778889999999999999999999999999999999999999
Q ss_pred ccccCChhhHHHHHHHHHHHHHcCcEEEcceeeeecCCCCccccccccccccCCCceEEeecCccccccceeeEeEeeec
Q 001708 283 ECFTMDEKRSKAVTEAFVRLYKEGLIYRDLRLVNWDCVLRTAISDIEVDYVDIPKREMRNVPGYEKQVEFGVLTSFAYPL 362 (1022)
Q Consensus 283 ~~~T~d~~~~~~v~~~F~~L~ekGlIyr~~~~V~W~p~~~TaLsd~EVe~~~~~~~t~~~vp~y~~~~e~g~l~~~~y~l 362 (1022)
+|+||||.|+++|+++|.+|+++|||||+.+||+|||.|+|||||+||+|++..+. .++++|++
T Consensus 161 ~y~T~d~~y~~~~~~~F~~l~~kGliyr~~kpV~Wcp~~~TaLa~~Evey~~~~s~----------------~~~v~F~~ 224 (961)
T PRK13804 161 PYTTMDFHAEARIAREFGKFAAKGQLYRGSKPVMWSVVERTALAEAEIEYHDIESD----------------TIWVKFPV 224 (961)
T ss_pred CcCcCCHHHHHHHHHHHHHHHHCCCEEeCCcceecCCCCCCCccchhcccccccCc----------------eEEEEEEe
Confidence 99999999999999999999999999999999999999999999999999987654 35678887
Q ss_pred CCC------cceEEEeeccccccccCcEEEEcCCcc-------------------c-------------------cc---
Q 001708 363 EGG------LGEIVVATTRVETMLGDTAIAIHPEDA-------------------R-------------------YS--- 395 (1022)
Q Consensus 363 ~~~------~~~l~v~TTrPeTl~g~~avaV~P~d~-------------------r-------------------y~--- 395 (1022)
.++ +.+++||||||||||||+||||||+++ + |+
T Consensus 225 ~~~~~~~~~~~~lviwTTtPwTl~an~aiav~p~~~Y~~v~~~~~~~~~~~~~~e~~iva~~~~~~~~~~~~~~~~~~~~ 304 (961)
T PRK13804 225 KDGKGILDSGTYVVIWTTTPWTIPANRAISYSPDIEYGLYEVTGAENDFWAKPGERLVVADALAESVAKKAGVESFERLA 304 (961)
T ss_pred cCcccccCCCCeEEEEeCCchhhhhCeEEEECCCCceEEEEeccccccccccCCcEEEeHHHHHHHHHHHhCCCCcEEEE
Confidence 542 468999999999999999999999972 4 33
Q ss_pred -----cccCCeeecCCCCC-----ccceEeCCccccCCCCCCceecCCCCCcchHHHHHHcCC-ceeeeeCCCCccccCC
Q 001708 396 -----HLHGKFAIHPFNGR-----KIPIICDAILVDPKFGTGAVKITPAHDPNDFDVGKRHNL-EFINIFTDDGKINSNG 464 (1022)
Q Consensus 396 -----~L~G~~~~~P~~~~-----~~pIi~~~~~V~~~~GTG~V~~~PaH~~~Dy~~~~~~~L-~~i~iid~~G~~~e~~ 464 (1022)
+|+|++|.|||.++ .+|||++++ |++++|||+||+|||||++||++|++||| +++++||++|+|++++
T Consensus 305 ~~~g~~L~g~~~~~P~~~~~~~~~~~pvi~~~~-V~~~~GTG~Vh~aPahg~~Dy~~~~~~~l~~~~~~vd~~G~~~~~~ 383 (961)
T PRK13804 305 DVKGEDLEKIVCAHPLDGLDGYEFEVPVLDGDH-VTDDAGTGFVHTAPGHGREDFNVWMKYGRTEIPVTVDEDGFYTENA 383 (961)
T ss_pred EEEhhhccCCEEECCCCCcccccceeEEEecCc-cCCCCCCceEEeCCCCCHHHHHHHHHcCCCcccccCCCCeEEccCC
Confidence 79999999999998 899999995 99999999999999999999999999999 9999999999999988
Q ss_pred CCC--------CCCCChhhHHHHHHHHHHHcCCccccccccccccccccCCCceecccccccceechH-------HHHHH
Q 001708 465 GLE--------FEGMPRFKAREAVNEALKKKGLYRGAKDNEMRLGLCSRSNDVVEPMIKPQWYVNCNS-------MAMEA 529 (1022)
Q Consensus 465 g~~--------f~G~~~~~ar~~vi~~L~~~gll~~~~~~~~~~p~c~Rs~~~i~~~~~~QWFi~~~~-------l~~~a 529 (1022)
| + |.|+.+++||+.|++.|++.|++++.+++.|+||+|||||+||++++++||||+|++ +++++
T Consensus 384 ~-~~~g~~v~~~~G~~~~ea~~~Ii~~L~~~g~l~~~~~~~h~yp~~wR~~~pii~r~t~QWFi~~~~~~~~~~~~k~~a 462 (961)
T PRK13804 384 P-GFGGARVIDDEGKKYGDANKAVIEKLIEAGLLLARGRLKHSYPHSWRSKKPVIFRNTPQWFISMDKDLGDGTTLRSRA 462 (961)
T ss_pred C-ccccccccccCCcchhhhhHHHHHHHHhCCCcccccceecCCCccCCCCCeEEEeccccccEEcCCcccchHHHHHHH
Confidence 7 6 899999999999999999999999999999999999999999999999999999998 99999
Q ss_pred HHhhhccCCCceEEeccccHHHHHHHHhhccCccceeccCCCCccCcceeccCchhhhcc-----------CCCCcceEE
Q 001708 530 LYAVMDDDKKKLELIPRQYTAEWRRWLEAIRDWCVSRQLWWGHQIPAWYVTLEDDELKEL-----------GSYNDHWIV 598 (1022)
Q Consensus 530 l~~v~~~~~~~i~~~P~~~~~~~~~wl~~l~DWcISRQ~~WG~pIP~~~~~~~~~~~~~~-----------~~~~~~w~~ 598 (1022)
++++ ++|+|+|+++++++.+||++++||||||||+||||||+|||+. ++.+.+. ....+.|+.
T Consensus 463 l~~i-----~~v~~~P~~~~~r~~~~i~~~~DWcISRQR~WG~PIP~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~w~~ 536 (961)
T PRK13804 463 LDAI-----DKTRFVPAAGQNRLYNMIEDRPDWVISRQRAWGVPIPIFVAED-GEILMDEEVNARIADAFEEEGADAWFA 536 (961)
T ss_pred HHHH-----hccEEECHHHHHHHHHHHhcCccceeeeeccCCceeeEEEcCC-CCEeccHHHHHHHHHHHHhcCCccccc
Confidence 9999 6899999999999999999999999999999999999999953 3221100 011234442
Q ss_pred ecCHHHHHHHHhhhcCC---CCcccccCCCcEEEEeccCccccccccCCCCChhhhhcCCcCcccccccccchHHHHHHH
Q 001708 599 ARDEKEALAVANKKFSG---KKFEMCQDPDVLDTWFSSGLFPLSVLGWPDDTDDLKAFYPTSVLETGHDILFFWVARMVM 675 (1022)
Q Consensus 599 ~~~~~ea~~~~~~~~~~---~~~~~~~d~DvlDtWFdSgl~p~s~lg~p~~~~d~~~~~P~dl~~~G~Dil~fW~a~m~~ 675 (1022)
.. .. ..++. +...++|++||||||||||++++..+++ +.++ .||+|++++|+||+||||++|++
T Consensus 537 ~~-~~-------~~~~~~~~~~~~~~r~~DvlDvWFdSg~s~~~~~~~---~~~~--~~PaD~~~eG~Di~rgWF~s~ll 603 (961)
T PRK13804 537 EG-AK-------ERFLGGFHPNGEFTKVTDILDVWFDSGSTHAFVLED---RPDL--KWPADLYLEGSDQHRGWFNSSLL 603 (961)
T ss_pred cC-HH-------HhcCcccCcccceEecCcceeeeecCCCCccccccC---Cccc--CCCceEEEEEcccccHHHHHHHH
Confidence 11 11 11222 2446999999999999999988776543 3344 58999999999999999999999
Q ss_pred HHhhhcCCCCceEEEeccceeCCCCccceecCCcccCcchhhccccchhHHHhhhcCCCChHHHHHHHhcccCCCCCCCC
Q 001708 676 LGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIP 755 (1022)
Q Consensus 676 ~~~~l~~~~Pfk~V~~Hg~v~D~~GrKMSKSlGNvIdP~dvI~g~~l~~l~~~l~~~nl~~~e~~~a~~~~~~~~~~~i~ 755 (1022)
+++.++|..||++|++||||+|.+|+|||||+||||||.++|+
T Consensus 604 ~s~~~~~~~P~k~V~~HG~vld~~G~KMSKSlGNvIdP~~ii~------------------------------------- 646 (961)
T PRK13804 604 ESCGTRGRAPYKAVLTHGFTLDEKGEKMSKSLGNTVSPQDVIK------------------------------------- 646 (961)
T ss_pred HHHHhcCCCChhhEEEeccEECCCCCCccCCCCCcCCHHHHHH-------------------------------------
Confidence 9999999999999999999999999999999999999999999
Q ss_pred CCCchHHHHHHHhccCCCcccccchhhhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCC-CCCCCCChhhHHHHHHHHHHH
Q 001708 756 ECGTDALRFALVSYTAQSDKINLDIQRVVGYRQWCNKLWNAVRFSMSKLGEGFVPPLK-LHPHNLPFSCKWILSVLNKAI 834 (1022)
Q Consensus 756 ~~GaDaLR~~L~~~~~~~~Dinf~~~~~~~~r~f~nkl~N~~rf~l~~l~~~~~p~~~-~~~~~~~~~D~wil~~L~~~~ 834 (1022)
+||||+||||+++ +..++|++|+.+.+...++++++|||++||+++++.+ |.+... .....+..+|+||+++|++++
T Consensus 647 ~yGaD~lRl~lls-~~~~~D~~fs~~~l~~~~~~~~kL~N~~rf~l~nl~~-~~~~~~~~~~~~~~~~D~wil~~l~~~~ 724 (961)
T PRK13804 647 QSGADILRLWVAS-VDYSDDQRIGKEILKQVSETYRKLRNTLRWLLGNLAH-FDPGEDVVAYADLPELERYMLHRLNELD 724 (961)
T ss_pred hcCHHHHHHHHHh-CCCCCCcccCHHHHHHHHHHHHHHHHHHHHHHhcccc-CCcccccCChhhcCHHHHHHHHHHHHHH
Confidence 8999999999997 5678999999999998899999999999999998864 655321 122356778999999999999
Q ss_pred HHHHhhhhcCCHHHHHHHHHHHHHhhhhHHHHHhhcccccCCCcccHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHH
Q 001708 835 SRTASSLNSYEFSDAASTVYSWWQYQFCDVFIEAIKPYFAGDNPAFASERSAAQHVLWVCLETGLRLLHPFMPFVTEELW 914 (1022)
Q Consensus 835 ~~v~~a~e~~~f~~a~~~i~~f~~~~l~~~Yle~~K~~l~~~~~~~~~~r~~a~~~L~~~L~~~l~LL~PfmPfitEelw 914 (1022)
+.+.++|++|+|++|++.+++|++++|||+||+.+|+|++++... +..+++++.+|+.+|+.+++||||||||+|||||
T Consensus 725 ~~v~~~~e~y~f~~a~~~l~~f~~~~lsn~Yle~~K~rl~~~~~~-~~~r~~~~~vL~~il~~l~~lLaPi~P~~aEeiw 803 (961)
T PRK13804 725 GLVREAYDAYDFKRIYKALVNFVNVDLSAFYFDIRKDALYCDAPS-SLRRRAAQTVFYEIFVRLTKWLAPILPFTAEEAW 803 (961)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhhHhhhcCCCC-cHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 999999999999999999999998999999999999999876321 1157789999999999999999999999999999
Q ss_pred HhCCCCCCCCCCCCeeeccCCCCCCCCCCHHHHHHHHHHHH----HHHHHHHHHHHhccCCCC--CcceEEEEecCchhH
Q 001708 915 QRLPQPKGCATKESIMLCEYPSAVEGWTDERAEFEMDLVES----TVRCIRSLRAEVLGKQKN--ERLPAIAFCQTKGVS 988 (1022)
Q Consensus 915 q~L~~~~~~~~~~SI~~~~~P~~~~~~~~~~~e~~~~~v~~----iv~~iRslr~~~~~k~i~--~~~~v~i~~~~~~~~ 988 (1022)
++|+.. ..+||+++.||.+++.+.|++++..++.++. +..++|++|++. .|+ ..+.+.|.+.+....
T Consensus 804 ~~L~~~----~~~sv~l~~wP~~~~~~~d~~~~~~~~~~~~~r~~v~~~le~~R~~~---~i~~~~e~~v~l~~~~~~~~ 876 (961)
T PRK13804 804 LYRYPE----EEVSVHLEQFPETPAFWRDDALAEKWRKFRAVRDVVTGALEEERAAK---RIGSSLEAAPTVYIADPELL 876 (961)
T ss_pred HhcccC----CCCceEecCCCCCcchhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhC---CCCCCcceeEEEEcCCHHHH
Confidence 999841 2369999999999988989999888777766 346788888876 664 445566655554444
Q ss_pred HHHHHHHHHHHHhhccCcEEEec
Q 001708 989 EIIRSHELEIVTLSTSSSLKALS 1011 (1022)
Q Consensus 989 ~~l~~~~~~I~~L~~v~~v~i~~ 1011 (1022)
+.++.. .|+.|++|++|++..
T Consensus 877 ~~l~~~--~l~~~~~vs~~~~~~ 897 (961)
T PRK13804 877 AALEGL--DFAEICITSQLTVAA 897 (961)
T ss_pred HHHHHH--HHHHHhhhCceEEec
Confidence 666665 499999999999863
No 15
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=7.4e-173 Score=1612.67 Aligned_cols=786 Identities=28% Similarity=0.452 Sum_probs=699.7
Q ss_pred CcCCCCCCCCcccccchhhhcCCCChhHHHHHHHHHHHcCCcccCCC--CCCCcEEEECCCCCCCCCCCcchhHHHHHHH
Q 001708 125 EFVDPETPLGEKKRMSKQMAKEYNPSSVEKSWYSWWENSGYFIADNK--SSKPSFVIVLPPPNVTGALHIGHALTTAIQD 202 (1022)
Q Consensus 125 ~~~~~~t~~~~k~~~~~~~~~~y~p~~vE~~w~~~W~~~~~f~~~~~--~~k~~f~i~~pPPy~nG~LHiGHal~~~i~D 202 (1022)
.+++|+|.|+||.|+ .++|.+|+++|+++++|++..+ +++++|+|++|||||||.||||||+|++++|
T Consensus 7 tl~lp~t~f~m~~~l----------~~~E~~~~~~W~~~~~~~~~~~~~~~~~~f~i~~~pPyanG~lHiGHa~~~~~~D 76 (912)
T PRK05743 7 TLNLPKTDFPMRANL----------PKREPEILKRWEENDLYQKIREANKGKPKFILHDGPPYANGDIHIGHALNKILKD 76 (912)
T ss_pred hcCCCCCCCCCCCCh----------HHhhHHHHHHHHHCCCccccchhcCCCCcEEEeCCCCCCCCCccHHHHHHHHHHH
Confidence 578999999998554 5799999999999999997642 5678999999999999999999999999999
Q ss_pred HHHHHHHhCCCeeeeeccCCccChhHHHHHHHHHHHHhCCCccccChHHHHHHHHHHHHHHHHHHHHHHHHhccccccCC
Q 001708 203 TIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWKWKDEYGGTILRQQRRLGASLDWSR 282 (1022)
Q Consensus 203 ii~Ry~rm~G~~Vl~~pG~D~~Glp~q~~vEk~l~~~~~~~~~~~g~e~f~~~~~~~~~~~~~~i~~ql~rlG~s~DW~r 282 (1022)
+++||+||+||+|+|+|||||||||||.+||+++ |.+++++++++|+++|++|++++++.|++||++||+++||++
T Consensus 77 ii~Ry~rm~G~~v~~~~G~D~~Glpie~~~ek~l----~~~~~~~~~~~f~~~c~~~~~~~~~~~~~~~~~lG~~~dw~~ 152 (912)
T PRK05743 77 IIVKSKTMSGFDAPYVPGWDCHGLPIELKVEKKL----GKKGKKLSAAEFRKKCREYALEQVDIQREDFKRLGVLGDWDN 152 (912)
T ss_pred HHHHHHHccCCcccCCCCcCCCccHhHHHHHHHc----CCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccCCC
Confidence 9999999999999999999999999999999875 556788999999999999999999999999999999999999
Q ss_pred ccccCChhhHHHHHHHHHHHHHcCcEEEcceeeeecCCCCccccccccccccCCCceEEeecCccccccceeeEeEeeec
Q 001708 283 ECFTMDEKRSKAVTEAFVRLYKEGLIYRDLRLVNWDCVLRTAISDIEVDYVDIPKREMRNVPGYEKQVEFGVLTSFAYPL 362 (1022)
Q Consensus 283 ~~~T~d~~~~~~v~~~F~~L~ekGlIyr~~~~V~W~p~~~TaLsd~EVe~~~~~~~t~~~vp~y~~~~e~g~l~~~~y~l 362 (1022)
+|+||||.|+++|+++|.+|+++|+|||+.++|+|||.|+|+|||+||+|++..++ .++++|++
T Consensus 153 ~~~T~~~~~~~~v~~~f~~l~~~Gliy~~~~~v~w~p~~~TaLad~Evey~~~~s~----------------~~yv~f~l 216 (912)
T PRK05743 153 PYLTMDFKYEANIIRALGKMAKKGYLYKGLKPVYWCPDCGSALAEAEVEYHDKTSP----------------SIYVAFPV 216 (912)
T ss_pred CcCCCCHHHHHHHHHHHHHHHHCCCEEecceeEecCCCcCCCchhhHhhcccccCc----------------eEEEEEEe
Confidence 99999999999999999999999999999999999999999999999999986643 35678888
Q ss_pred CCC-------cceEEEeeccccccccCcEEEEcCCcc---------cc---------------------------ccccC
Q 001708 363 EGG-------LGEIVVATTRVETMLGDTAIAIHPEDA---------RY---------------------------SHLHG 399 (1022)
Q Consensus 363 ~~~-------~~~l~v~TTrPeTl~g~~avaV~P~d~---------ry---------------------------~~L~G 399 (1022)
.++ +.+|+|||||||||+||+||||||+++ +| ++|+|
T Consensus 217 ~~~~~~~~~~~~~l~i~TTrP~Tl~~n~aiav~p~~~Y~~~~~~~~~~i~a~~~~~~~~~~~~~~~~~~~~~~~G~~l~g 296 (912)
T PRK05743 217 VDGKLAAAFKDASLVIWTTTPWTLPANQAIAVHPEFDYVLVEVEGEKLIVAKDLVESVLERFGWEDYEVLATFKGKELEG 296 (912)
T ss_pred cCcchhcccCCCEEEEEeCCChhhhhCeEEEECCCCeeEEEEcCCCEEEEeHHhHHHHHHhhCCcceEEEEEechHhhcC
Confidence 653 368999999999999999999999983 67 47999
Q ss_pred CeeecCCCCCccceEeCCccccCCCCCCceecCCCCCcchHHHHHHcCCceeeeeCCCCccccCCCCCCCCCChhhHHHH
Q 001708 400 KFAIHPFNGRKIPIICDAILVDPKFGTGAVKITPAHDPNDFDVGKRHNLEFINIFTDDGKINSNGGLEFEGMPRFKAREA 479 (1022)
Q Consensus 400 ~~~~~P~~~~~~pIi~~~~~V~~~~GTG~V~~~PaH~~~Dy~~~~~~~L~~i~iid~~G~~~e~~g~~f~G~~~~~ar~~ 479 (1022)
++|.|||.++.+|||.+++ |++++|||+||+|||||++||++|++|||+++++||++|+|++++| +|.|+++++||++
T Consensus 297 ~~~~~Pl~~~~~pvi~~~~-V~~~~GTG~Vh~aPahg~~Dy~~~~~~~L~~~~~vd~~G~~~~~~~-~~~Gl~v~ea~~~ 374 (912)
T PRK05743 297 LVAQHPFYDRDSPVILGDH-VTLDAGTGLVHTAPGHGEDDYVVGQKYGLEVLNPVDDDGRYTEEAP-LFAGLFVFKANPK 374 (912)
T ss_pred CEEECCCCCCeeeEeCCCc-cCCCCCcCeEEeCCCCCHHHHHHHHHcCCCcccccCCCceEecCCc-ccCCcCHHHhHHH
Confidence 9999999999999999995 9999999999999999999999999999999999999999999988 8999999999999
Q ss_pred HHHHHHHcCCccccccccccccccccCCCceecccccccceechH--HHHHHHHhhhccCCCceEEeccccHHHHHHHHh
Q 001708 480 VNEALKKKGLYRGAKDNEMRLGLCSRSNDVVEPMIKPQWYVNCNS--MAMEALYAVMDDDKKKLELIPRQYTAEWRRWLE 557 (1022)
Q Consensus 480 vi~~L~~~gll~~~~~~~~~~p~c~Rs~~~i~~~~~~QWFi~~~~--l~~~al~~v~~~~~~~i~~~P~~~~~~~~~wl~ 557 (1022)
|++.|+++|++++.+++.|+||||||||+||++++++||||++++ +++++++++ ++++|+|+++++++.+||+
T Consensus 375 Ii~~L~~~g~l~~~~~~~h~yp~~wR~~~pvi~r~~~QWFi~~~~~~~k~~~l~~~-----~~v~~~P~~~~~r~~~~i~ 449 (912)
T PRK05743 375 IIEKLEEKGALLKEEKITHSYPHCWRTKKPVIFRATPQWFISMDKKGLREQALKAI-----EKVKWIPAWGKNRIESMVE 449 (912)
T ss_pred HHHHHHhCCCeeeeeeeeccCCeecCCCCEEEEEecCcccEeCChHHHHHHHHHHH-----cccEEEChHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999998 999999999 4799999999999999999
Q ss_pred hccCccceeccCCCCccCcceeccCchhhhc-c----------CCCCcceEEecCHHHHHHHHhhhcCCCCcccccCCCc
Q 001708 558 AIRDWCVSRQLWWGHQIPAWYVTLEDDELKE-L----------GSYNDHWIVARDEKEALAVANKKFSGKKFEMCQDPDV 626 (1022)
Q Consensus 558 ~l~DWcISRQ~~WG~pIP~~~~~~~~~~~~~-~----------~~~~~~w~~~~~~~ea~~~~~~~~~~~~~~~~~d~Dv 626 (1022)
+++||||||||+||||||+|||..|++.... . ....+.|+... ....+|.+...+.|++||
T Consensus 450 ~~~DWcISRQR~WG~PIP~~~~~~~g~~~~~~~~~~~i~~~~~~~g~~~W~~~~--------~~~~~~~~~~~~~~~~Dv 521 (912)
T PRK05743 450 NRPDWCISRQRTWGVPIPIFYHKETGELHPTPELIEHVAKLFEKEGIDAWFELD--------AKELLPDEADEYEKETDI 521 (912)
T ss_pred cCcCccccccceeCceEEEEEECCCCcEeecHHHHHHHHHHHHhhCCccccccC--------HHHhcCCcccCEEECCch
Confidence 9999999999999999999999876532100 0 01123444321 112244344578999999
Q ss_pred EEEEeccCccccccccCCCCChhhhhcCCcCcccccccccchHHHHHHHHHhhhcCCCCceEEEeccceeCCCCccceec
Q 001708 627 LDTWFSSGLFPLSVLGWPDDTDDLKAFYPTSVLETGHDILFFWVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKS 706 (1022)
Q Consensus 627 lDtWFdSgl~p~s~lg~p~~~~d~~~~~P~dl~~~G~Dil~fW~a~m~~~~~~l~~~~Pfk~V~~Hg~v~D~~GrKMSKS 706 (1022)
||||||||++|++++++ +. +.+||+|++++|+||+||||++|++.++.++|..||++|++||||+|.+|+|||||
T Consensus 522 lDvWfdSg~s~~~~~~~---~~--~~~~P~Dl~~~G~Di~r~Wf~~~l~~~~~~~g~~P~k~vl~HG~vld~~G~KMSKS 596 (912)
T PRK05743 522 LDVWFDSGSSHAAVLEQ---RP--ELGYPADLYLEGSDQHRGWFQSSLLTSVATRGKAPYKQVLTHGFTVDGKGRKMSKS 596 (912)
T ss_pred hhhhhhhCCCHHHHhcC---cc--ccCCCceEEEecccccchHHHHHHHHHHHhcCCCccceeEEeeeEECCCCCCCCCC
Confidence 99999999999999885 22 26899999999999999999999999999999999999999999999999999999
Q ss_pred CCcccCcchhhccccchhHHHhhhcCCCChHHHHHHHhcccCCCCCCCCCCCchHHHHHHHhccCCCcccccchhhhHHH
Q 001708 707 LGNVIDPLEVINGISLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLDIQRVVGY 786 (1022)
Q Consensus 707 lGNvIdP~dvI~g~~l~~l~~~l~~~nl~~~e~~~a~~~~~~~~~~~i~~~GaDaLR~~L~~~~~~~~Dinf~~~~~~~~ 786 (1022)
+||||||.++|+ +||||+||||+++ ++.++|++|+.+.+.+.
T Consensus 597 lGNvIdP~~ii~-------------------------------------~yGaDalR~~ll~-~~~~~D~~~s~~~l~~~ 638 (912)
T PRK05743 597 LGNVIDPQDVIK-------------------------------------KYGADILRLWVAS-TDYSGDVRISDEILKQV 638 (912)
T ss_pred CCCcCCHHHHHH-------------------------------------hcChHHHHHHHHh-cCCCCCeeecHHHHHHH
Confidence 999999999999 8999999999997 77899999999999998
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCCCC-CCCCCCChhhHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHhhhhHHH
Q 001708 787 RQWCNKLWNAVRFSMSKLGEGFVPPLK-LHPHNLPFSCKWILSVLNKAISRTASSLNSYEFSDAASTVYSWWQYQFCDVF 865 (1022)
Q Consensus 787 r~f~nkl~N~~rf~l~~l~~~~~p~~~-~~~~~~~~~D~wil~~L~~~~~~v~~a~e~~~f~~a~~~i~~f~~~~l~~~Y 865 (1022)
+++.+||||++||+++++.+ |.|... ++...+..+|+||+++|+++++.++++|++|+|++|++.|++|+++++||+|
T Consensus 639 ~~~~~kl~N~~rf~~~nl~~-~~~~~~~~~~~~l~~~D~~il~~l~~~~~~v~~~~e~~~f~~a~~~l~~f~~~~ls~~Y 717 (912)
T PRK05743 639 AEAYRRIRNTLRFLLGNLND-FDPAKDAVPYEELLELDRWALHRLAELQEEILEAYENYDFHKVYQKLHNFCSVDLSAFY 717 (912)
T ss_pred HHHHHHHHHHHHHHHhCccC-CCcccccCCchhCCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhhhceee
Confidence 89999999999999998864 554221 1122457889999999999999999999999999999999999989999999
Q ss_pred HHhhcccccCCCcccHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHhCCCCCCCCCCCCeeeccCCCCCCCCCCHH
Q 001708 866 IEAIKPYFAGDNPAFASERSAAQHVLWVCLETGLRLLHPFMPFVTEELWQRLPQPKGCATKESIMLCEYPSAVEGWTDER 945 (1022)
Q Consensus 866 le~~K~~l~~~~~~~~~~r~~a~~~L~~~L~~~l~LL~PfmPfitEelwq~L~~~~~~~~~~SI~~~~~P~~~~~~~~~~ 945 (1022)
++.+|+++++.... +..|++++.+|+.+|+.+++||||||||+|||||++|+.. ..+||+++.||+.++.+.|+.
T Consensus 718 ie~~K~rly~~~~~-~~~r~~~~~vL~~~l~~l~~lLaPi~P~~aEelw~~l~~~----~~~sv~~~~wP~~~~~~~~~~ 792 (912)
T PRK05743 718 LDIIKDRLYTDAAD-SLARRSAQTALYHILEALVRWLAPILSFTAEEIWQYLPGE----REESVFLEEWPEVPELADDEE 792 (912)
T ss_pred heeccHhhhcCCCC-cHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcccC----CCCceEEecCCCCccccCCHH
Confidence 99999998875211 1157789999999999999999999999999999999731 236999999999998889999
Q ss_pred HHHHHHHHHH----HHHHHHHHHHHhccCCCCC--cceEEEEecCchhHHHHHHHHHHHHHhhccCcEEEec
Q 001708 946 AEFEMDLVES----TVRCIRSLRAEVLGKQKNE--RLPAIAFCQTKGVSEIIRSHELEIVTLSTSSSLKALS 1011 (1022)
Q Consensus 946 ~e~~~~~v~~----iv~~iRslr~~~~~k~i~~--~~~v~i~~~~~~~~~~l~~~~~~I~~L~~v~~v~i~~ 1011 (1022)
++..++.+++ +++.+|..|++. .|+. ++.+.|.+.+ +.++...+.|+.+++|++|++..
T Consensus 793 ~~~~~~~~~~~r~~v~~~i~~~r~~~---~i~~~~~~~~~~~~~~----~~l~~~~~~l~~~~~vs~v~~~~ 857 (912)
T PRK05743 793 LLAKWEELLEVRDEVNKALEEARKEK---VIGSSLEAEVTLYADA----ALLESLGDELRFLLIVSQVEVAD 857 (912)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcc---CCCcccceEEEEEcCH----HHHHHHHHHHHHHhhhCceEEec
Confidence 9999999986 666777777765 6644 4445554432 66777778899999999999864
No 16
>PRK13208 valS valyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=7.8e-169 Score=1567.68 Aligned_cols=782 Identities=32% Similarity=0.566 Sum_probs=703.7
Q ss_pred hhhcCCCChhHHHHHHHHHHHcCCcccCCCCCCCcEEEECCCCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeeeeeccC
Q 001708 142 QMAKEYNPSSVEKSWYSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGM 221 (1022)
Q Consensus 142 ~~~~~y~p~~vE~~w~~~W~~~~~f~~~~~~~k~~f~i~~pPPy~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG~ 221 (1022)
++++.|||.++|++||++|+++++|+++.+.++++|+|++|||||||.||||||+|++++|+++||+||+||+|+|+|||
T Consensus 5 ~~~~~~~~~~~E~~~~~~W~~~~~f~~~~~~~~~~f~i~~ppPy~nG~lHiGH~~~~~~~D~~~R~~r~~G~~v~~~~G~ 84 (800)
T PRK13208 5 ELPKKYDPEELEEKWQKIWEEEGTYKFDPDERKPVYSIDTPPPTVSGSLHIGHVFSYTHTDFIARYQRMRGYNVFFPQGW 84 (800)
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCcccccccCCCcEEEecCcCCCCCCccHHHHHhHHHHHHHHHHHHcCCCcccCCCCc
Confidence 35678999999999999999999999987666789999999999999999999999999999999999999999999999
Q ss_pred CccChhHHHHHHHHHHHHhCCCccccChHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHH
Q 001708 222 DHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVR 301 (1022)
Q Consensus 222 D~~Glp~q~~vEk~l~~~~~~~~~~~g~e~f~~~~~~~~~~~~~~i~~ql~rlG~s~DW~r~~~T~d~~~~~~v~~~F~~ 301 (1022)
||||+|||.+||+++ |++++++|+++|++.|++|++++++.|++||++||+|+||+|+|+||||.|+++|+++|.+
T Consensus 85 D~~Glpie~~~ek~~----g~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~lg~s~Dw~~~~~T~d~~~~~~v~~~f~~ 160 (800)
T PRK13208 85 DDNGLPTERKVEKYY----GIRKDDISREEFIELCRELTDEDEKKFRELWRRLGLSVDWSLEYQTISPEYRRISQKSFLD 160 (800)
T ss_pred CCCcchHHHHHHHHh----CCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCeeeccCCCcccCCHHHHHHHHHHHHH
Confidence 999999999999754 8889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCcEEEcceeeeecCCCCccccccccccccCCCceEEeecCccccccceeeEeEeeecCCCcceEEEeecccccccc
Q 001708 302 LYKEGLIYRDLRLVNWDCVLRTAISDIEVDYVDIPKREMRNVPGYEKQVEFGVLTSFAYPLEGGLGEIVVATTRVETMLG 381 (1022)
Q Consensus 302 L~ekGlIyr~~~~V~W~p~~~TaLsd~EVe~~~~~~~t~~~vp~y~~~~e~g~l~~~~y~l~~~~~~l~v~TTrPeTl~g 381 (1022)
|+++|+|||+.++|+|||.|+|+|||+||+|++.. |.+++++|++.+ +.+|+|||||||||+|
T Consensus 161 L~~~Gliy~~~~~v~wcp~~~t~Lsd~ev~~~~~~----------------~~~~~ikf~~~~-~~~l~v~TtrPeTl~g 223 (800)
T PRK13208 161 LYKKGLIYRAEAPVLWCPRCETAIAQAEVEYRERE----------------GKLNYIKFPVED-GEEIEIATTRPELLPA 223 (800)
T ss_pred HHHCCCeeecCcccccCCCCCCccchhhhcccccc----------------ceEEEEEEEecC-CCEEEEEeCCcchhhh
Confidence 99999999999999999999999999999988765 346789999875 4689999999999999
Q ss_pred CcEEEEcCCccccccccCCeeecCCCCCccceEeCCccccCCCCCCceecCCCCCcchHHHHHHcCCceeeeeCCCCccc
Q 001708 382 DTAIAIHPEDARYSHLHGKFAIHPFNGRKIPIICDAILVDPKFGTGAVKITPAHDPNDFDVGKRHNLEFINIFTDDGKIN 461 (1022)
Q Consensus 382 ~~avaV~P~d~ry~~L~G~~~~~P~~~~~~pIi~~~~~V~~~~GTG~V~~~PaH~~~Dy~~~~~~~L~~i~iid~~G~~~ 461 (1022)
|+||||||++++|++|+|+++.||++++++|||++++ |++++|||+||+||+||++||++|++|||+++++||++|+|+
T Consensus 224 ~~ai~v~p~~~~~~~l~g~~~~~P~~~~~ipii~~~~-V~~~~GTG~V~~~p~hd~~D~~~~~~~~l~~~~~i~~~G~~~ 302 (800)
T PRK13208 224 CVAVVVHPDDERYKHLVGKTAIVPLFGVEVPILADPL-VDPDFGTGAVMICTFGDKTDVTWWRELNLPTRIIIDEDGRMT 302 (800)
T ss_pred CeEEEECCCchHHHHhcCCEEEcCCCCCcceEECCCc-cCCCCCcceEEeCCCCCHHHHHHHHHcCCCcccccCCCceEe
Confidence 9999999999999999999999999999999999995 999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCChhhHHHHHHHHHHHcCCccccccccccccccccCCCceecccccccceechHHHHHHHHhhhccCCCce
Q 001708 462 SNGGLEFEGMPRFKAREAVNEALKKKGLYRGAKDNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKL 541 (1022)
Q Consensus 462 e~~g~~f~G~~~~~ar~~vi~~L~~~gll~~~~~~~~~~p~c~Rs~~~i~~~~~~QWFi~~~~l~~~al~~v~~~~~~~i 541 (1022)
+++| +|+||++++||+.|++.|+++|++.+.+++.|+||+|||||++|++++++||||+++++++++++++ +++
T Consensus 303 ~~~g-~~~G~~~~~a~~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~v~~~~~~qwfl~~~~~~~~~~~~~-----~~~ 376 (800)
T PRK13208 303 EAAG-KLAGLTIEEARKKIVEDLKSGGLLGKQEPIKHNVKFCERCDTPLEILVTRQWFIKVLDLKEELLERG-----KEI 376 (800)
T ss_pred cCCc-ccCCCCHHHHHHHHHHHHHhCCCeeceeeeeccCCccCCCCCEEEEeccceeeEeCHHHHHHHHHhh-----cCc
Confidence 9999 8999999999999999999999999999999999999999999999999999999999999999999 579
Q ss_pred EEeccccHHHHHHHHhhcc-CccceeccCCCCccCcceeccCchhhhccCCCCcceEEecCHHHHHHHHhhhcCCCC-cc
Q 001708 542 ELIPRQYTAEWRRWLEAIR-DWCVSRQLWWGHQIPAWYVTLEDDELKELGSYNDHWIVARDEKEALAVANKKFSGKK-FE 619 (1022)
Q Consensus 542 ~~~P~~~~~~~~~wl~~l~-DWcISRQ~~WG~pIP~~~~~~~~~~~~~~~~~~~~w~~~~~~~ea~~~~~~~~~~~~-~~ 619 (1022)
+|+|++.++++.+||++++ |||||||||||||||+|+|..|+.... .. ..|+.-....++.. ...|+.++ ..
T Consensus 377 ~~~P~~~~~~~~~~l~~~~~DW~ISRqr~WG~pIP~~~~~~~g~~~~---~~-~~~l~~~~~~d~~~--~~~~~~~g~~~ 450 (800)
T PRK13208 377 NWYPEHMRVRLENWIEGLNWDWCISRQRYFGTPIPVWYCKDCGHPIL---PD-EEDLPVDPTKDEPP--GYKCPQCGSPG 450 (800)
T ss_pred EEECHHHHHHHHHHHHhcCCCceeeeccccCCcceEEEeCCCCCeec---Cc-hhhhccCchhhccc--cccccccCCcC
Confidence 9999999999999999988 999999999999999999987753110 00 01110001111100 01222222 35
Q ss_pred cccCCCcEEEEeccCccccccccCCCCChhhhhcCCcCcccccccccchHHHHHHHHHhhhcCCCCceEEEeccceeCCC
Q 001708 620 MCQDPDVLDTWFSSGLFPLSVLGWPDDTDDLKAFYPTSVLETGHDILFFWVARMVMLGIKLGGEVPFTKVYLHPMIRDAH 699 (1022)
Q Consensus 620 ~~~d~DvlDtWFdSgl~p~s~lg~p~~~~d~~~~~P~dl~~~G~Dil~fW~a~m~~~~~~l~~~~Pfk~V~~Hg~v~D~~ 699 (1022)
++|++||||||||||++|++++|||.++.+|++|||+|++++|+||++||+++|++++..++|..||++|++||+|+|.+
T Consensus 451 ~~~~~dvlD~WfdS~~~~~~~~~~~~~~~~~~~~~P~d~~~~G~Di~~~w~~~~l~~~~~~~~~~Pf~~v~~hg~v~~~~ 530 (800)
T PRK13208 451 FEGETDVMDTWATSSITPLIVTGWERDEDLFEKVFPMDLRPQGHDIIRTWLFYTILRAYLLTGKLPWKNIMISGMVLDPD 530 (800)
T ss_pred EEecCCEEEEEEeCCchHHHHhCCCCChhhhhhcCCceEEEeecchhhhHHHHHHHHHHHhcCCCCcceEEEeeEEECCC
Confidence 88999999999999999999999999888899999999999999999999999999999999999999999999999999
Q ss_pred CccceecCCcccCcchhhccccchhHHHhhhcCCCChHHHHHHHhcccCCCCCCCCCCCchHHHHHHHhccCCCcccccc
Q 001708 700 GRKMSKSLGNVIDPLEVINGISLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLD 779 (1022)
Q Consensus 700 GrKMSKSlGNvIdP~dvI~g~~l~~l~~~l~~~nl~~~e~~~a~~~~~~~~~~~i~~~GaDaLR~~L~~~~~~~~Dinf~ 779 (1022)
|+|||||+||+|+|.++|+ +||+|++||||+ .++.++|++|+
T Consensus 531 G~KMSKS~GN~i~p~~~i~-------------------------------------~yg~D~lR~~l~-~~~~~~d~~fs 572 (800)
T PRK13208 531 GKKMSKSKGNVVTPEELLE-------------------------------------KYGADAVRYWAA-SARLGSDTPFD 572 (800)
T ss_pred CCCCCCCCCCCCCHHHHHH-------------------------------------HcCccHHHHHHh-cCCCCCCceec
Confidence 9999999999999999999 899999999999 78888999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHh
Q 001708 780 IQRVVGYRQWCNKLWNAVRFSMSKLGEGFVPPLKLHPHNLPFSCKWILSVLNKAISRTASSLNSYEFSDAASTVYSWWQY 859 (1022)
Q Consensus 780 ~~~~~~~r~f~nkl~N~~rf~l~~l~~~~~p~~~~~~~~~~~~D~wil~~L~~~~~~v~~a~e~~~f~~a~~~i~~f~~~ 859 (1022)
.+.+.+.++|+|||||+++|++. +.+.... .........|+||+++|+.+++.+.++|++|+|+.|++.|++|+++
T Consensus 573 ~~~~~~~~~~l~kl~N~~r~~~~-~~~~~~~---~~~~~~~~~D~~il~~l~~~i~~v~~~~e~~~f~~A~~~i~~f~~~ 648 (800)
T PRK13208 573 EKQVKIGRRLLTKLWNASRFVLH-FSADPEP---DKAEVLEPLDRWILAKLAKVVEKATEALENYDFAKALEEIESFFWH 648 (800)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-ccccccc---CccccCCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 99999999999999999999873 3221111 0112456789999999999999999999999999999999999988
Q ss_pred hhhHHHHHhhcccccCCCcccHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHhCCCCCCCCCCCCeeeccCCCCCC
Q 001708 860 QFCDVFIEAIKPYFAGDNPAFASERSAAQHVLWVCLETGLRLLHPFMPFVTEELWQRLPQPKGCATKESIMLCEYPSAVE 939 (1022)
Q Consensus 860 ~l~~~Yle~~K~~l~~~~~~~~~~r~~a~~~L~~~L~~~l~LL~PfmPfitEelwq~L~~~~~~~~~~SI~~~~~P~~~~ 939 (1022)
++||+||+.+|++++.++.. ..+++++.+|+.+|+.+++||||||||+|||||++|+. +||+.++||++++
T Consensus 649 ~~~n~Yie~~k~~~~~~~~~--~~~~~~~~~l~~~l~~l~~LLaPf~P~iaEelw~~L~~-------~si~~~~wP~~~~ 719 (800)
T PRK13208 649 VFCDDYLELVKSRAYGEDEE--EEQKSARYTLYTVLDTLLRLLAPFLPFITEEVWSWLYG-------GSVHRASWPEPDE 719 (800)
T ss_pred HhhHHHHHHhhHHhcCCCCc--HHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHhCCC-------CceEeccCCCCCc
Confidence 99999999999998765332 02667889999999999999999999999999999971 4899999999988
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcce--EEEEecCchhHHHHHHHHHHHHHhhccCcEEEecC
Q 001708 940 GWTDERAEFEMDLVESTVRCIRSLRAEVLGKQKNERLP--AIAFCQTKGVSEIIRSHELEIVTLSTSSSLKALSF 1012 (1022)
Q Consensus 940 ~~~~~~~e~~~~~v~~iv~~iRslr~~~~~k~i~~~~~--v~i~~~~~~~~~~l~~~~~~I~~L~~v~~v~i~~~ 1012 (1022)
.+.++.++..++.+++++..+|++|+++ +++.+.+ +.+...+.+ .+.++.+.+.|+.+++|++|++...
T Consensus 720 ~~~~~~~~~~~~~v~~ii~~iR~~r~~~---~i~~~~~l~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~v~~~~~ 790 (800)
T PRK13208 720 ELIDEEDEELGELAKEILSAVRKYKSEA---GLSLNAPLKKVEVYGPAD-LELLEAAEEDLKAAGNIEELELVEG 790 (800)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHc---CCCcCCccceEEEecchH-HHHHHHHHHHHHHHhCcCeEEEecC
Confidence 8888999999999999999999999998 7754544 343344445 7788889999999999999999754
No 17
>TIGR00392 ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms.
Probab=100.00 E-value=2.4e-164 Score=1539.22 Aligned_cols=760 Identities=29% Similarity=0.483 Sum_probs=668.1
Q ss_pred hhcCCCChhHHHHHHHHHHHcCCcccCCC--CCCCcEEEECCCCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeeeeecc
Q 001708 143 MAKEYNPSSVEKSWYSWWENSGYFIADNK--SSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPG 220 (1022)
Q Consensus 143 ~~~~y~p~~vE~~w~~~W~~~~~f~~~~~--~~k~~f~i~~pPPy~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG 220 (1022)
++..|||.++|++|+++|+++++|++..+ .++++|+|++|||||||.||||||+|++++|+++||+||+||+|+|+||
T Consensus 2 f~~~~~~~~~E~~~~~~W~~~~~f~~~~~~~~~~~~f~i~~~pPy~nG~lH~GH~~~~~~~D~~~Ry~rm~G~~v~~~~G 81 (861)
T TIGR00392 2 FPMRGNLSKREEKILAFWQENDIFEKVKKLNKGKPEFIFHDGPPYANGSIHLGHALNKILKDIILRYKTMQGFNVTRKPG 81 (861)
T ss_pred CCCCCChhHhhHHHHHHHHHCCchhhhhhccCCCCCeEEecCCCCCCCCccHHHHHHHHHHHHHHHHHHcCCCccCCCCC
Confidence 34569999999999999999999997653 4678999999999999999999999999999999999999999999999
Q ss_pred CCccChhHHHHHHHHHHHHhCCCccccChHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHH
Q 001708 221 MDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFV 300 (1022)
Q Consensus 221 ~D~~Glp~q~~vEk~l~~~~~~~~~~~g~e~f~~~~~~~~~~~~~~i~~ql~rlG~s~DW~r~~~T~d~~~~~~v~~~F~ 300 (1022)
|||||||||.+|||+++.....+.+.+++++|+++|++|+.++++.+++||++||+|+||+|+|+||||.|+++|+|+|.
T Consensus 82 ~D~~Glpie~~~ek~l~~~~~~~~~~~~~~~f~~~c~~~~~~~~~~~~~~~~~lG~~~dw~~~y~T~~p~y~~~~~~~f~ 161 (861)
T TIGR00392 82 WDTHGLPIEHKVEKKLGISGKKEISSLEIEEFREKCREFALKQIEEQREQFQRLGVWGDWENPYKTMDPSYEESQWWLFK 161 (861)
T ss_pred cCCCccHHHHHHHHHhCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhCceecCCCCcCcCCHHHHHHHHHHHH
Confidence 99999999999998763322233445688999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCcEEEcceeeeecCCCCcccccccccccc----CCCceEEeecCccccccceeeEeEeeecCCCcc--------e
Q 001708 301 RLYKEGLIYRDLRLVNWDCVLRTAISDIEVDYVD----IPKREMRNVPGYEKQVEFGVLTSFAYPLEGGLG--------E 368 (1022)
Q Consensus 301 ~L~ekGlIyr~~~~V~W~p~~~TaLsd~EVe~~~----~~~~t~~~vp~y~~~~e~g~l~~~~y~l~~~~~--------~ 368 (1022)
+|+++|||||+.++|+|||.|+|+|||+||+|++ ..+ ..++++|++.+++. +
T Consensus 162 ~l~~~gliyr~~~~v~w~p~~~T~La~~Ev~~~~~~~~~~~----------------~~~~v~f~~~~~~~~~~~~~~~~ 225 (861)
T TIGR00392 162 EAHEKGLLYRGLKPVYWSPRCRTALAEAEVEYKENYKDVKD----------------PSIYVKFPVKKDKKTYLKVKLSS 225 (861)
T ss_pred HHHHCCCEeecceeeecCCCcCCcccHHHHhcccccccccC----------------ceEEEEEEecCCcccccccccce
Confidence 9999999999999999999999999999999875 333 34568888876554 8
Q ss_pred EEEeeccccccccCcEEEEcCCcc-----------cc--------------------------ccccCCeeecCCCCCcc
Q 001708 369 IVVATTRVETMLGDTAIAIHPEDA-----------RY--------------------------SHLHGKFAIHPFNGRKI 411 (1022)
Q Consensus 369 l~v~TTrPeTl~g~~avaV~P~d~-----------ry--------------------------~~L~G~~~~~P~~~~~~ 411 (1022)
|+|||||||||+||+||||||+++ +| ++|+|++|.||+.++.+
T Consensus 226 l~i~TTrP~Tl~~~~ai~v~p~~~Y~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~G~~l~g~~~~~P~~~~~~ 305 (861)
T TIGR00392 226 LLIWTTTPWTLPSNLAIAVHPDFEYALVQDNTKVEYFILAKKLVEKLYNKAGSDYEIIKTFKGSDLEGLEYEHPLYDFVS 305 (861)
T ss_pred EEEEECCcccccCCeeeeeCCCCceEEEEcCCCCcEEEEeHHHHHHHHHhcCCceEEEeeecchhhCCCEEECCCCcccc
Confidence 999999999999999999999965 44 56899999999999988
Q ss_pred ------ceE-eCCccccCCCCCCceecCCCCCcchHHHHHHcCCceeeeeCCCCccccCCCC------CCCCCChhhHHH
Q 001708 412 ------PII-CDAILVDPKFGTGAVKITPAHDPNDFDVGKRHNLEFINIFTDDGKINSNGGL------EFEGMPRFKARE 478 (1022)
Q Consensus 412 ------pIi-~~~~~V~~~~GTG~V~~~PaH~~~Dy~~~~~~~L~~i~iid~~G~~~e~~g~------~f~G~~~~~ar~ 478 (1022)
||+ +++ +|++++|||+||+|||||++||++|++|||+++++||++|+|+++.+. .|.|+++++||+
T Consensus 306 ~~~~~~p~v~~~~-~V~~~~GTG~V~~~Pah~~~D~~~~~~~~l~~~~~vd~~g~~~~~~~~~~g~~~~~~g~~~~~a~~ 384 (861)
T TIGR00392 306 QLKEGAPVVIGGD-HVTTEDGTGIVHTAPGHGEEDYEIGKKYGLEVLSPVDEKGVYTEGVNDFQGRFVKDADKDIIKANK 384 (861)
T ss_pred ccccCCcEEeCCC-CCCCCCCCceeEcCCCCCHHHHHHHHHcCCCcccccCCCceECCcCccccccccccCCccHHHhHH
Confidence 974 557 599999999999999999999999999999999999999998876652 489999999999
Q ss_pred HHHHHHHHcCCccccccccccccccccCCCceecccccccceechHHHHHHHHhhhccCCCceEEeccccHHHHHHHHhh
Q 001708 479 AVNEALKKKGLYRGAKDNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKLELIPRQYTAEWRRWLEA 558 (1022)
Q Consensus 479 ~vi~~L~~~gll~~~~~~~~~~p~c~Rs~~~i~~~~~~QWFi~~~~l~~~al~~v~~~~~~~i~~~P~~~~~~~~~wl~~ 558 (1022)
.|++.|+++|++++.+++.|+||+|||||+||++++++||||+++++++++++++ ++++|+|+..++++.+||++
T Consensus 385 ~ii~~L~~~g~l~~~~~~~h~~p~~~R~~~~v~~~~~~QWFi~~~~~k~~~l~~~-----~~i~~~P~~~~~~~~~~l~~ 459 (861)
T TIGR00392 385 IIIEQLKDKGLLLKAEKITHSYPHCWRTKTPVIYRATEQWFIKTKDIKDQMLEQI-----KKVNWVPEWGEGRFGNWLEN 459 (861)
T ss_pred HHHHHHHhCCCeeeeeeEecCCCccCCCCCEEEEecCccccEEcHHHHHHHHHHh-----CCcEEECchHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999999999 57999999999999999999
Q ss_pred ccCccceeccCCCCccCcceeccCchhhhcc----------CCCCcceEEecCHHHHHHHHhhhcCCCCcccccCCCcEE
Q 001708 559 IRDWCVSRQLWWGHQIPAWYVTLEDDELKEL----------GSYNDHWIVARDEKEALAVANKKFSGKKFEMCQDPDVLD 628 (1022)
Q Consensus 559 l~DWcISRQ~~WG~pIP~~~~~~~~~~~~~~----------~~~~~~w~~~~~~~ea~~~~~~~~~~~~~~~~~d~DvlD 628 (1022)
++||||||||+||||||+|+|+.|++..... ....+.|..... .+........|+.+ ..+.|++||||
T Consensus 460 l~DW~ISRqr~WG~pIP~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~w~~~~~-~~~~~~~~~~~~~~-~~~~r~~dvlD 537 (861)
T TIGR00392 460 RPDWCISRQRYWGIPIPIWYCEDTGEPIVVGSIEELIELIELKGIDAWFEDLH-RDFLDKITLKSGDG-GEYRRVPDVLD 537 (861)
T ss_pred CCcceeeccccCCCeeeEEEECCCCCCcCchhHHHHHHHHHHhCCccccccch-hhhcCchhccCCCC-cceEEcccccc
Confidence 9999999999999999999998765421000 001122322110 00001111234333 47899999999
Q ss_pred EEeccCccccccccCCCCChhhhhcCCcCcccccccccchHHHHHHHHHhhhcCCCCceEEEeccceeCCCCccceecCC
Q 001708 629 TWFSSGLFPLSVLGWPDDTDDLKAFYPTSVLETGHDILFFWVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLG 708 (1022)
Q Consensus 629 tWFdSgl~p~s~lg~p~~~~d~~~~~P~dl~~~G~Dil~fW~a~m~~~~~~l~~~~Pfk~V~~Hg~v~D~~GrKMSKSlG 708 (1022)
||||||++|++.++||.++.+|++|||+|++++|+||+||||++|++.++.+++..||++|++||||+|.+|+|||||+|
T Consensus 538 vWfdS~~~~~~~~~~~~~~~~f~~~~P~d~~i~G~Di~r~Wf~~~~~~~~~~~~~~P~k~v~~hG~vl~~~G~KMSKSkG 617 (861)
T TIGR00392 538 VWFDSGSMPYASIHYPFENEKFKEVFPADFILEGSDQTRGWFYSSLAIGTALFGQAPYKNVITHGFTLDEKGRKMSKSLG 617 (861)
T ss_pred chhhcCcchHHhcCCCCCcchhhccCCceEEEEecchhccHHHHHHHHHHHHcCCCChHhhEecceEECCCCCCcCCCCC
Confidence 99999999999999998777899999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCcchhhccccchhHHHhhhcCCCChHHHHHHHhcccCCCCCCCCCCCchHHHHHHHhccCCCcccccchhhhHHHHH
Q 001708 709 NVIDPLEVINGISLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLDIQRVVGYRQ 788 (1022)
Q Consensus 709 NvIdP~dvI~g~~l~~l~~~l~~~nl~~~e~~~a~~~~~~~~~~~i~~~GaDaLR~~L~~~~~~~~Dinf~~~~~~~~r~ 788 (1022)
|||+|.|+|+ +||+|+|||||++. +.++|++|+.+.+.+.++
T Consensus 618 NvI~p~d~i~-------------------------------------~yGaDalR~~ll~~-~~~~D~~fs~~~l~~~~~ 659 (861)
T TIGR00392 618 NVVDPLKVIN-------------------------------------KYGADILRLYVASS-DPWEDLRFSDEILKQVVE 659 (861)
T ss_pred CCCCHHHHHH-------------------------------------HcCHHHHHHHHHhC-CCCCCceECHHHHHHHHH
Confidence 9999999999 89999999999988 889999999999988665
Q ss_pred -HHHHHHHHHHHHH--hhcCCCCCCCC-CCCCCCCChhhHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHhhhhHH
Q 001708 789 -WCNKLWNAVRFSM--SKLGEGFVPPL-KLHPHNLPFSCKWILSVLNKAISRTASSLNSYEFSDAASTVYSWWQYQFCDV 864 (1022)
Q Consensus 789 -f~nkl~N~~rf~l--~~l~~~~~p~~-~~~~~~~~~~D~wil~~L~~~~~~v~~a~e~~~f~~a~~~i~~f~~~~l~~~ 864 (1022)
++|++||+++|++ +++.+ |.|.. ......+...|+|++++++.+++.+.++|++|+|+.|++.+++|++.+|||+
T Consensus 660 ~~~n~l~N~~~~~~~~~~l~~-~~~~~~~~~~~~l~~~d~~ll~~l~~~~~~v~~~~e~~~~~~a~~~l~~f~~~~l~n~ 738 (861)
T TIGR00392 660 KYRKIRWNTYRFLLTYANLDK-FDPLFNSVAVEKFPEEDRWILSRLNSLVEEVNEALEKYNFHKVLRALQDFIVEELSNW 738 (861)
T ss_pred HHHHHHHHHHHHHHHHhcccc-CCccccccccccCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998 66643 55421 1112245678999999999999999999999999999999999998889999
Q ss_pred HHHhhcccccCCCcccHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHhCCCCCCCCCCCCeeeccCCCCCCCCCCH
Q 001708 865 FIEAIKPYFAGDNPAFASERSAAQHVLWVCLETGLRLLHPFMPFVTEELWQRLPQPKGCATKESIMLCEYPSAVEGWTDE 944 (1022)
Q Consensus 865 Yle~~K~~l~~~~~~~~~~r~~a~~~L~~~L~~~l~LL~PfmPfitEelwq~L~~~~~~~~~~SI~~~~~P~~~~~~~~~ 944 (1022)
|++.+|++++..... + .+++++.+|+.+++.+++||+|||||+|||||+.|+.. ...+||++++||+.++.+.|+
T Consensus 739 Yi~~~k~~lw~~~~~-~-~~~~~~~~l~~~l~~l~~lL~P~~P~~aeeiw~~L~~~---~~~~si~~~~wP~~~~~~~d~ 813 (861)
T TIGR00392 739 YIRIIRDRLYCEAKD-N-DKRAAQTTLYYALLTLVRLLAPFLPHTAEEIYQNLPGG---EEEESVHLNLWPEVDEEFIDE 813 (861)
T ss_pred HHHHhhHHhccCCCC-H-HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcccc---CCCCceeccCCCCCchhhcCH
Confidence 999999987754221 0 34478999999999999999999999999999999752 123699999999999889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCC
Q 001708 945 RAEFEMDLVESTVRCIRSLRAEVLGKQKN 973 (1022)
Q Consensus 945 ~~e~~~~~v~~iv~~iRslr~~~~~k~i~ 973 (1022)
.++..++.+++++..+|++|++. +++
T Consensus 814 ~~~~~~~~l~~~i~~ir~ir~~~---~~~ 839 (861)
T TIGR00392 814 ALEANMAIVREIVEAFLALRDAA---NKK 839 (861)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh---Chh
Confidence 99999999999999999999998 664
No 18
>PLN02959 aminoacyl-tRNA ligase
Probab=100.00 E-value=4.6e-148 Score=1401.11 Aligned_cols=733 Identities=20% Similarity=0.286 Sum_probs=605.4
Q ss_pred hhcCCCChhHHHHHHHHHHHcCCcccCCCC----CCCcEEEECCCCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeeeee
Q 001708 143 MAKEYNPSSVEKSWYSWWENSGYFIADNKS----SKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWV 218 (1022)
Q Consensus 143 ~~~~y~p~~vE~~w~~~W~~~~~f~~~~~~----~k~~f~i~~pPPy~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~ 218 (1022)
++..+++.++|++||++|+++++|+++.+. ++++|+|++||||+||.||||||+|++++|+++||+||+||+|+|+
T Consensus 9 ~~~r~~l~~iE~k~q~~W~~~~~fe~~~~~~~~~~~~kf~i~~ppPY~NG~lHiGHa~t~t~~D~i~Rykrm~G~~vlfp 88 (1084)
T PLN02959 9 TARRDRLLEIEVAVQKWWEEEKVFEAEAGDEPPKPGEKFFGNFPYPYMNGLLHLGHAFSLSKLEFAAAYHRLRGANVLLP 88 (1084)
T ss_pred CchhcCHHHHHHHHHHHHHhcCCcccCcccccCCCCCcEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHHcCCCccCCC
Confidence 345678889999999999999999998642 3478999999999999999999999999999999999999999999
Q ss_pred ccCCccChhHHHHHHHHHH--HHhCCC----------------------ccccChHHHHHHHHHHHHH------------
Q 001708 219 PGMDHAGIATQVVVEKKLM--RERKLT----------------------RHDIGREQFVSEVWKWKDE------------ 262 (1022)
Q Consensus 219 pG~D~~Glp~q~~vEk~l~--~~~~~~----------------------~~~~g~e~f~~~~~~~~~~------------ 262 (1022)
|||||||+||+..|||... .+.|.. ..++++++|+++|++++.+
T Consensus 89 ~G~d~tGlPIe~~aek~~~ei~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~k~~~k~~~~~~~~~~~~ 168 (1084)
T PLN02959 89 FAFHCTGMPIKASADKLAREIQQYGNPPVFPEEDEDEAAAVAAAKAEAEAAAAPPDKFKGKKSKAVAKSGTQKYQWEIMR 168 (1084)
T ss_pred CCcCCCCccHHHHHHHHHHHHHHcCCCcccccccccccccccccccccccccccHHHHHHHHHHHHHHhCCchHHHHHHh
Confidence 9999999999999998531 223422 2456788999999888755
Q ss_pred ---------------------HHHHHHHHHHHhccccccCCccccCC--hhhHHHHHHHHHHHHHcCcEEEcceeeeecC
Q 001708 263 ---------------------YGGTILRQQRRLGASLDWSRECFTMD--EKRSKAVTEAFVRLYKEGLIYRDLRLVNWDC 319 (1022)
Q Consensus 263 ---------------------~~~~i~~ql~rlG~s~DW~r~~~T~d--~~~~~~v~~~F~~L~ekGlIyr~~~~V~W~p 319 (1022)
+...++++|++||+++||+|+|+||| |.|.++|+|+|.+|+++|+||||.|||+|||
T Consensus 169 ~~~~~~~~i~~f~dp~~~~~yF~~~~~~~~k~lG~~iDW~r~f~T~d~np~y~~~v~wqf~~L~ekG~I~~g~rpv~wcp 248 (1084)
T PLN02959 169 SFGLPDSEIAKFQDPYHWLSYFPPLAKEDLKAFGLGCDWRRSFITTDVNPYYDAFVRWQFRKLKKKGKIVKDKRYTIYSP 248 (1084)
T ss_pred hcCCchhhhhhccCHHHHHHhccHHHHHHHHHhCceEeCCCCcCCCCCChhHHHHHHHHHHHHHHCCCEEecCeeeeeCC
Confidence 23678999999999999999999999 9999999999999999999999999999999
Q ss_pred CCCccccccccccccCCCceE---EeecCccccccceeeEeEeeecCCCcceEEEeeccccccccCcEEEEcCCcc----
Q 001708 320 VLRTAISDIEVDYVDIPKREM---RNVPGYEKQVEFGVLTSFAYPLEGGLGEIVVATTRVETMLGDTAIAIHPEDA---- 392 (1022)
Q Consensus 320 ~~~TaLsd~EVe~~~~~~~t~---~~vp~y~~~~e~g~l~~~~y~l~~~~~~l~v~TTrPeTl~g~~avaV~P~d~---- 392 (1022)
.|+|+|||+|+++.+..++.. ++++..+. . .+. +. .+.+++.+++|||||||||+|||||||||+++
T Consensus 249 ~~~t~ladhe~~~~e~~~~~~y~~ikf~v~~~-~-~~~---~~-~~~~~~~~l~~aTtrPeTl~g~ta~~VnP~~~Y~~~ 322 (1084)
T PLN02959 249 LDGQPCADHDRASGEGVGPQEYVLIKMEVLPP-F-PGK---LK-ALEGKKVFLAAATLRPETMYGQTNCWVLPDGKYGAY 322 (1084)
T ss_pred CCCCCchhhHHhcCCCCCcceeEEEEEeecCc-c-hhh---hh-hcCCCCeEEEEEeCccchhhhheeEEECCCCeEEEE
Confidence 999999999999877554432 22222110 0 000 00 12345679999999999999999999999976
Q ss_pred ------------c------c------------------ccccCCeeecCCCCCc-cceEeCCccccCCCCCCceecCCCC
Q 001708 393 ------------R------Y------------------SHLHGKFAIHPFNGRK-IPIICDAILVDPKFGTGAVKITPAH 435 (1022)
Q Consensus 393 ------------r------y------------------~~L~G~~~~~P~~~~~-~pIi~~~~~V~~~~GTG~V~~~PaH 435 (1022)
| | ++|+|+.|.||+.+++ +||+++.+ |++++|||+||+||||
T Consensus 323 ~~~~~e~~i~s~~~~~~~~~q~~~~~~~~~~~l~~~~G~~L~G~~~~~Pl~~~~~i~ilp~~~-V~~~~GTGvV~~vPah 401 (1084)
T PLN02959 323 EINDTEVFILTARAALNLAYQNFSKVPGKPTCLVELTGYDLIGLPLKSPLAFNEVIYALPMLT-ILTDKGTGVVTSVPSD 401 (1084)
T ss_pred EecCCeEEEEehhhhhhhHHhhhcccCCCcEEEEEEEHHHhCCCEEECCCCCCcceeEeceEE-EeCCCCeeeEEeCCCC
Confidence 2 4 5799999999999887 89999994 9999999999999999
Q ss_pred CcchHHH----------HHHcCC--------ceeeeeCCCCc----------------------------------cccC
Q 001708 436 DPNDFDV----------GKRHNL--------EFINIFTDDGK----------------------------------INSN 463 (1022)
Q Consensus 436 ~~~Dy~~----------~~~~~L--------~~i~iid~~G~----------------------------------~~e~ 463 (1022)
||+||.+ +++||| +++++||.+|. |++.
T Consensus 402 ~pdDy~~~~dl~~k~~~~~kygi~~~~~~~~~~i~iid~~g~G~~~a~~~~~~~~i~s~~d~~~l~~a~~~~Y~~~f~~g 481 (1084)
T PLN02959 402 SPDDYMALSDLKAKPALRAKYGVKDEWVLPFEVVPIINIPEFGDKSAEKVCEDLKIKSQNDKEKLAEAKRLTYLKGFTDG 481 (1084)
T ss_pred CHHHHHHHHhhccchhHHHHcCCCcccccccCCcCccccCCCCcchhHHHHHhhcccccchhhHHHHHhhhhhhhccccc
Confidence 9999998 577887 56899888763 3333
Q ss_pred ---CCCCCCCCChhhHHHHHHHHHHHcCCccc-cccccccccccccCCCceecccccccceech--HHHHHHHHhhhccC
Q 001708 464 ---GGLEFEGMPRFKAREAVNEALKKKGLYRG-AKDNEMRLGLCSRSNDVVEPMIKPQWYVNCN--SMAMEALYAVMDDD 537 (1022)
Q Consensus 464 ---~g~~f~G~~~~~ar~~vi~~L~~~gll~~-~~~~~~~~p~c~Rs~~~i~~~~~~QWFi~~~--~l~~~al~~v~~~~ 537 (1022)
+| +|.|++|++||+.|++.|+++|+++. .++ ..|+|+|||++|++++++||||+++ ++++++++++
T Consensus 482 ~m~~g-~~~G~~v~eAr~~Ii~~L~~~G~l~~~~ep---~~pv~~R~g~~~~v~l~~QWFi~~~~~~~k~~a~~~l---- 553 (1084)
T PLN02959 482 TMLVG-EYAGRKVQEAKPLIKKKLIEAGQAILYSEP---EKKVMSRSGDECVVALTDQWYLTYGEEEWKKKAEKCL---- 553 (1084)
T ss_pred cccCc-CcCCcCHHHHHHHHHHHHHhCCCceeeeEc---CCCeEECCCCEEEEeecCCeeEECCchHHHHHHHHHH----
Confidence 67 89999999999999999999998774 453 3589999999999999999999998 6999999999
Q ss_pred CCceEEeccccHHHHHHHHhhccCccceeccCCCCccCcceeccCchhhhccCCCCcceEEecCHHHHHHHHhhhcCCC-
Q 001708 538 KKKLELIPRQYTAEWRRWLEAIRDWCVSRQLWWGHQIPAWYVTLEDDELKELGSYNDHWIVARDEKEALAVANKKFSGK- 616 (1022)
Q Consensus 538 ~~~i~~~P~~~~~~~~~wl~~l~DWcISRQ~~WG~pIP~~~~~~~~~~~~~~~~~~~~w~~~~~~~ea~~~~~~~~~~~- 616 (1022)
++|+|+|++++++|.+||+|++||||||||||||||| |++...-+.+.+++.++.++++++..+.. ..++..
T Consensus 554 -~~v~~~P~~~~~~~~~wl~~l~DWciSRQr~wGtpIP-Wd~~~~ieslsdstiy~a~yti~~~~~~~-----~~~g~~~ 626 (1084)
T PLN02959 554 -SKMNLYSDETRHGFEHTLGWLNQWACSRSFGLGTRIP-WDEQFLIESLSDSTIYMAYYTVAHLLQGG-----DMYGKDK 626 (1084)
T ss_pred -cccEEECHHHHHHHHHHHhCCCceeecccccCCCcCC-cccceeeccCCCCceeechhhHHHHHhhh-----hccCCcc
Confidence 6899999999999999999999999999999999999 75321111122345555555543322211 111111
Q ss_pred -Cccccc-CCCcEEEEeccCccccccccCCCC-----ChhhhhcCCcCcccccccccchHHHHHHHHHhhhcCCCCc-eE
Q 001708 617 -KFEMCQ-DPDVLDTWFSSGLFPLSVLGWPDD-----TDDLKAFYPTSVLETGHDILFFWVARMVMLGIKLGGEVPF-TK 688 (1022)
Q Consensus 617 -~~~~~~-d~DvlDtWFdSgl~p~s~lg~p~~-----~~d~~~~~P~dl~~~G~Dil~fW~a~m~~~~~~l~~~~Pf-k~ 688 (1022)
.+...+ ++|||||||+||++|+++ |||.+ +.+|++|||+|++++|+||+|||++++++++.+++++.|| +.
T Consensus 627 ~~i~~~~~~~dV~D~wF~Sg~~p~~t-~~p~~~l~~~r~ef~~~yP~Dl~~sG~Dii~~wl~~~l~~~~al~~~~P~p~~ 705 (1084)
T PLN02959 627 SSIKPEQMTDEVWDFVFCGGPLPKSS-DIPAELLEKMKQEFEYWYPFDLRVSGKDLIQNHLTFAIYNHTAIWAEEHWPRG 705 (1084)
T ss_pred ccCChhhcCccceeEeecCCCccccc-CCCHHHHhhhhHHHHhhCCCeEEEecccHHHHHHHHHHHHHHHhcCCCCCCce
Confidence 122223 689999999999999998 99985 5789999999999999999999999999999999999999 67
Q ss_pred EEeccceeCCCCccceecCCcccCcchhhccccchhHHHhhhcCCCChHHHHHHHhcccCCCCCCCCCCCchHHHHHHHh
Q 001708 689 VYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVS 768 (1022)
Q Consensus 689 V~~Hg~v~D~~GrKMSKSlGNvIdP~dvI~g~~l~~l~~~l~~~nl~~~e~~~a~~~~~~~~~~~i~~~GaDaLR~~L~~ 768 (1022)
|++||+|+ .+|+|||||+||||+|.++|+ +||||+|||||++
T Consensus 706 v~v~G~V~-~~G~KMSKSkGNvI~p~diI~-------------------------------------kyGADalRl~la~ 747 (1084)
T PLN02959 706 FRCNGHLM-LNSEKMSKSTGNFLTLRQAIE-------------------------------------EFSADATRFALAD 747 (1084)
T ss_pred EEEccEEe-cCCcCccccCCCcCCHHHHHH-------------------------------------HhCchHHHHHHhh
Confidence 99999999 999999999999999999999 8999999999999
Q ss_pred ccCCCcccccchhhhHHHHHHHHHHHHHHHHHHhhcCC--CCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHhhhhcCCH
Q 001708 769 YTAQSDKINLDIQRVVGYRQWCNKLWNAVRFSMSKLGE--GFVPPLKLHPHNLPFSCKWILSVLNKAISRTASSLNSYEF 846 (1022)
Q Consensus 769 ~~~~~~Dinf~~~~~~~~r~f~nkl~N~~rf~l~~l~~--~~~p~~~~~~~~~~~~D~wil~~L~~~~~~v~~a~e~~~f 846 (1022)
.++..+|++|+.+.... +..+++|..+|+...+.. .+.+ ...+...|+||+++|+.+++.++++|++|+|
T Consensus 748 ~~~~~~D~nF~~k~~n~---~~~~l~n~~~~~~~~~~~~~~~~~-----~~~~~~~D~wils~l~~~i~~v~~a~e~y~f 819 (1084)
T PLN02959 748 AGDGVDDANFVFETANA---AILRLTKEIAWMEEVLAAESSLRT-----GPPSTYADRVFENEINIAIAETEKNYEAMMF 819 (1084)
T ss_pred cCCccCCCCccHHHHHH---HHHHHHHHHHHHHHhhhhhcccCC-----cccCCHHHHHHHHHHHHHHHHHHHHHHcccH
Confidence 88888999999877654 344566777776554431 1211 1124678999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhHHH-HHhhcc--cccCCCcccHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHhCCCCCCC
Q 001708 847 SDAASTVYSWWQYQFCDVF-IEAIKP--YFAGDNPAFASERSAAQHVLWVCLETGLRLLHPFMPFVTEELWQRLPQPKGC 923 (1022)
Q Consensus 847 ~~a~~~i~~f~~~~l~~~Y-le~~K~--~l~~~~~~~~~~r~~a~~~L~~~L~~~l~LL~PfmPfitEelwq~L~~~~~~ 923 (1022)
+.|++.. +| |+..|+ ++++++. ..++.+|+.+|+.+++||||||||+|||||++|+..
T Consensus 820 ~~A~~~~----------~Yel~~~k~~yr~~~~~~------~~~~~~L~~vl~~~l~LLaP~~PfiaEEiW~~l~~~--- 880 (1084)
T PLN02959 820 REALKSG----------FYDLQAARDEYRLSCGSG------GMNRDLVWRFMDVQTRLITPICPHYAEHVWREILKK--- 880 (1084)
T ss_pred HHHHHHH----------HHHHHHhHHHHhhccccc------hHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhccCC---
Confidence 9999963 23 555555 4444321 145789999999999999999999999999999531
Q ss_pred CCCCCeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 001708 924 ATKESIMLCEYPSAVEGWTDERAEFEMDLVESTVRCIRSLRAEV 967 (1022)
Q Consensus 924 ~~~~SI~~~~~P~~~~~~~~~~~e~~~~~v~~iv~~iRslr~~~ 967 (1022)
.+||++++||.++. .|+.++..++.+++++..||++++.+
T Consensus 881 --~~sI~~~~wP~~~~--~d~~~e~~~~~l~~~i~~iR~~~~~~ 920 (1084)
T PLN02959 881 --EGFAVTAGWPVAGE--PDLTLKRANKYLQDSIVSFRKLLQKQ 920 (1084)
T ss_pred --CCeEEecCCCCCCc--cCHHHHHHHHHHHHHHHHHHHhHHHh
Confidence 36999999999863 48889999999999999999999876
No 19
>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS.
Probab=100.00 E-value=1.4e-144 Score=1360.59 Aligned_cols=732 Identities=21% Similarity=0.312 Sum_probs=621.9
Q ss_pred hHHHHHHHHHHHcCCcccCCCCCCCcEEEECCCCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeeeeeccCCccChhHHH
Q 001708 151 SVEKSWYSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQV 230 (1022)
Q Consensus 151 ~vE~~w~~~W~~~~~f~~~~~~~k~~f~i~~pPPy~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG~D~~Glp~q~ 230 (1022)
+||++||++|+++++|+++.+ ++++|+|++||||+||.||||||+|++++|+++||+||+||+|+|++||||||+||+.
T Consensus 2 ~iE~k~~~~W~~~~~fe~~~~-~~~kf~i~~ppPy~nG~lH~GH~~~~~~~D~~aRy~Rm~G~~vl~p~G~d~~G~pi~~ 80 (938)
T TIGR00395 2 AIEKKWQKRWEEAHIFEADPD-DREKFFLTMAYPYLNGVMHAGHCRTFTIPEVSARFERMKGKNVLFPLGFHVTGTPILG 80 (938)
T ss_pred hHHHHHHHHHHhCCCcccCCC-CCCceEEecCCCCCCCCcccchhhhhhHHHHHHHHHHhcCCccCCCCccCCCCCchHH
Confidence 599999999999999999764 5789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH-h----CCCccccChHHHHHHH--HHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHH
Q 001708 231 VVEKKLMRE-R----KLTRHDIGREQFVSEV--WKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLY 303 (1022)
Q Consensus 231 ~vEk~l~~~-~----~~~~~~~g~e~f~~~~--~~~~~~~~~~i~~ql~rlG~s~DW~r~~~T~d~~~~~~v~~~F~~L~ 303 (1022)
++|+..... . ..+.+++++++|.+.| ++|++++.+.+++||++||+|+||+|+|+||||.|.++|+|+|.+|+
T Consensus 81 ~aek~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~lG~s~DW~r~~~T~dp~y~~~v~~~f~~L~ 160 (938)
T TIGR00395 81 LAELIKRRDELTIKNYTEVHAIPREELLKFTDPEYIVEYFSREAESACKSMGYSIDWRRSFKTTDPYYDRFIEWQMNKLK 160 (938)
T ss_pred HHHHhhhhhhhccccchhhccCCHHHHHhhcCHHHHHHHHHHHHHHHHHHhCceEECCCCccCCChhHHHHHHHHHHHHH
Confidence 999853221 1 1255789999999997 99999999999999999999999999999999999999999999999
Q ss_pred HcCcEEEcceeeeecCCCCccccccccccccCCCceEEeecCccccccceeeEeEeeecCCCcceEEEeeccccccccCc
Q 001708 304 KEGLIYRDLRLVNWDCVLRTAISDIEVDYVDIPKREMRNVPGYEKQVEFGVLTSFAYPLEGGLGEIVVATTRVETMLGDT 383 (1022)
Q Consensus 304 ekGlIyr~~~~V~W~p~~~TaLsd~EVe~~~~~~~t~~~vp~y~~~~e~g~l~~~~y~l~~~~~~l~v~TTrPeTl~g~~ 383 (1022)
++|+|||+.++|+|||.|+|+|||+||++.+..+ .+.+++++|++.+++.+|+|||||||||+|+|
T Consensus 161 e~G~iy~g~~~v~wcp~~~t~lsd~e~~~~e~~~--------------~~~~~~ikf~~~~~~~~l~~aTtRPETl~g~t 226 (938)
T TIGR00395 161 ELGLIVKGEHPVRYCPKDGNPVEDHDLLSGEGVT--------------IVEYILIKFELEDGAFYFVAATLRPETVYGVT 226 (938)
T ss_pred HCCCEecCCeeEeecCCCCCCCchhHhccCCccc--------------cceEEEEEEEcCCCceEEEEeeCCcchhhcce
Confidence 9999999999999999999999999998765322 13456788998777779999999999999999
Q ss_pred EEEEcCCcc---------------------cc-------------ccccCCeeecCCCCCccceEeCCccccCCCCCCce
Q 001708 384 AIAIHPEDA---------------------RY-------------SHLHGKFAIHPFNGRKIPIICDAILVDPKFGTGAV 429 (1022)
Q Consensus 384 avaV~P~d~---------------------ry-------------~~L~G~~~~~P~~~~~~pIi~~~~~V~~~~GTG~V 429 (1022)
||||||+++ +| ++|+|+++.||+.++.+||+++++ |++++|||+|
T Consensus 227 av~V~P~~~Y~~~~~~~e~~i~s~~~~~~~~~q~~~~~~~~~~~g~~l~G~~~~~P~~~~~ipil~~~~-V~~~~GTGvV 305 (938)
T TIGR00395 227 NCWVNPTITYVIAEVGGEKWITSKEAFENLSYQKLKYKPIEEVPGKQFIGKKVHNPVVGPEVPILPAEF-VDTTKGTGVV 305 (938)
T ss_pred eEEECCCCcEEEEEeCCcEEEEeHHHHHhhhhcccceeEEEEEchHhccCCEEECCCCCCeeEEeecce-eecCCCcceE
Confidence 999999986 23 689999999999999999999995 9999999999
Q ss_pred ecCCCCCcchHHHHHHc--------------CCceeeeeCC---------------------------------------
Q 001708 430 KITPAHDPNDFDVGKRH--------------NLEFINIFTD--------------------------------------- 456 (1022)
Q Consensus 430 ~~~PaH~~~Dy~~~~~~--------------~L~~i~iid~--------------------------------------- 456 (1022)
|+|||||++||.+++++ +|+++++++.
T Consensus 306 ~~~Pah~p~Dy~~~~~l~~~~~~~gi~~~~~~~~~i~ii~~~~~g~~~a~~~~~~~~i~~~~d~~~l~~a~~~~y~~~f~ 385 (938)
T TIGR00395 306 MSVPAHAPDDYIALEDLLHDPEYLGIKPVVIDIEPVPLIHTDGYGDLPAKEIVEEKGIKSQKDKNLLEEATKILYKEEYH 385 (938)
T ss_pred EeCCCCCHHHHHHHHHhhhcchhcCCcchhcccCCccceecCCCCcccHHHHHHHhcCCCchhhhHHHHHHHHHhhhhcc
Confidence 99999999999998864 4666776642
Q ss_pred CCccccCCCCCCCCCChhhHHHHHHHHHHHcCCccccccccccccccccCCCceecc-cccccceech--HHHHHHHHhh
Q 001708 457 DGKINSNGGLEFEGMPRFKAREAVNEALKKKGLYRGAKDNEMRLGLCSRSNDVVEPM-IKPQWYVNCN--SMAMEALYAV 533 (1022)
Q Consensus 457 ~G~~~e~~g~~f~G~~~~~ar~~vi~~L~~~gll~~~~~~~~~~p~c~Rs~~~i~~~-~~~QWFi~~~--~l~~~al~~v 533 (1022)
+|+|++++| +|+|+++++||+.|++.|+++|+++..+++. ..|+|+|||++|++. +++||||+++ ++++++++++
T Consensus 386 ~G~m~~~~~-~~~G~~v~ear~~i~~~L~~~g~~~~~~~~~-~~~v~~R~g~~~vv~~~~~QWFi~~~~~~~k~~~~~~l 463 (938)
T TIGR00395 386 TGVMIYNIP-PYKGMKVSEAKEKVKADLIDAGLADVMYEFS-ESPVICRCGTDCIVKVVEDQWFVKYSDESWKELAHECL 463 (938)
T ss_pred CceeccCCc-ccCCcCHHHhHHHHHHHHHHCCCceEeeecC-CCCcEecCCCeEEEeccCCCCeEEcCcHHHHHHHHHHH
Confidence 467787888 8999999999999999999999999876653 358899999999987 9999999999 5999999999
Q ss_pred hccCCCceEEeccccHHHHHHHHhhccCccceeccCCCCccCc---ceeccCchhhhccCCCCcceEEecCHHHHHHHHh
Q 001708 534 MDDDKKKLELIPRQYTAEWRRWLEAIRDWCVSRQLWWGHQIPA---WYVTLEDDELKELGSYNDHWIVARDEKEALAVAN 610 (1022)
Q Consensus 534 ~~~~~~~i~~~P~~~~~~~~~wl~~l~DWcISRQ~~WG~pIP~---~~~~~~~~~~~~~~~~~~~w~~~~~~~ea~~~~~ 610 (1022)
++++|+|+..++++.+||+|++||||||||+||||||+ |++.. +.+++.|+.++..++.....
T Consensus 464 -----~~~~~~P~~~~~~~~~~l~~l~DW~ISRqr~WGtpIP~d~~~~ies----lsdstiY~~~~~i~~~l~~~----- 529 (938)
T TIGR00395 464 -----EGMRIIPEEVKNAFEGKIDWLKDWACCRRYGLGTRLPWDEKWLIES----LSDSTIYMAYYTIAHYLNKD----- 529 (938)
T ss_pred -----hcCEEeCHHHHHHHHHHHhhhhhcccccccccCcccceeecEEeee----cchhhhhhhhccHHHHhhcc-----
Confidence 57999999999999999999999999999999999994 44421 22334444333222111100
Q ss_pred hhcCCCCcccccCCCcEEEEeccCccccccccCCCC-----ChhhhhcCCcCcccccccccchHHHHHHHHHhhhcCCCC
Q 001708 611 KKFSGKKFEMCQDPDVLDTWFSSGLFPLSVLGWPDD-----TDDLKAFYPTSVLETGHDILFFWVARMVMLGIKLGGEVP 685 (1022)
Q Consensus 611 ~~~~~~~~~~~~d~DvlDtWFdSgl~p~s~lg~p~~-----~~d~~~~~P~dl~~~G~Dil~fW~a~m~~~~~~l~~~~P 685 (1022)
.++. .. ..++++|+||.++..+ ...|||.. +.+|++|||+|++++|+||++||...+++++.++.+..|
T Consensus 530 -~~~~--~~--l~~ev~D~~~~~~~~~-~~t~~~~~~~~~~~~ef~~~yP~D~~~~GkDii~~H~~~~i~~~~a~~~~~~ 603 (938)
T TIGR00395 530 -YYGN--EQ--MTDEFFDYIFLGKGDV-KNTNIPLPAIQKLRREFEYWYPLDWRISGKDLIPNHLTFYIFHHVAIFPEKF 603 (938)
T ss_pred -CCCh--HH--CCcccCceEEECCCCh-hhcCCCHHHHHHHHHHHhhcCCceEEEEeeccccchHHHHHHHHHHcCCccc
Confidence 0100 11 2468999999865444 34477753 468999999999999999999999999999988888777
Q ss_pred c-eEEEeccceeCCCCccceecCCcccCcchhhccccchhHHHhhhcCCCChHHHHHHHhcccCCCCCCCCCCCchHHHH
Q 001708 686 F-TKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRF 764 (1022)
Q Consensus 686 f-k~V~~Hg~v~D~~GrKMSKSlGNvIdP~dvI~g~~l~~l~~~l~~~nl~~~e~~~a~~~~~~~~~~~i~~~GaDaLR~ 764 (1022)
| +.|++||||++ +|+|||||+||||+|.++|+ +||+|++||
T Consensus 604 ~Pk~i~~~G~vl~-~G~KMSKSlGNvI~p~d~i~-------------------------------------~yGaDalRl 645 (938)
T TIGR00395 604 WPRGIVVNGYVML-EGKKMSKSKGNVLTLEQAVE-------------------------------------KFGADVARL 645 (938)
T ss_pred cCcEEEEeceEEe-CCccccCcCCCCCCHHHHHH-------------------------------------HcChHHHHH
Confidence 6 99999999996 89999999999999999999 899999999
Q ss_pred HHHhccCCCcccccchhhhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHhhhhcC
Q 001708 765 ALVSYTAQSDKINLDIQRVVGYRQWCNKLWNAVRFSMSKLGEGFVPPLKLHPHNLPFSCKWILSVLNKAISRTASSLNSY 844 (1022)
Q Consensus 765 ~L~~~~~~~~Dinf~~~~~~~~r~f~nkl~N~~rf~l~~l~~~~~p~~~~~~~~~~~~D~wil~~L~~~~~~v~~a~e~~ 844 (1022)
||++.++.++|++|+.+.+.+.+++++++||++++++.... +... ...+..|+||+++++.+++.+.++|++|
T Consensus 646 ~Ll~~~~~~~D~~fs~~~~~~~~~~l~~l~n~~~~~~~~~~----~~~~---~~~~~~D~wlls~l~~~i~~v~~a~e~~ 718 (938)
T TIGR00395 646 YIADAAETVQDADWKESEVEGTILRLERLYEFAEEITKESN----LETG---EETSFIDRWLESRMNAAIKETYEAMENF 718 (938)
T ss_pred HHHhcCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhhcc----cCCC---ccCChHHHHHHHHHHHHHHHHHHHHHcc
Confidence 99998889999999999999999999999999998765432 1100 1245789999999999999999999999
Q ss_pred CHHHHH-HHHHHHHHhhhhHHHHHhhcccccCCCcccHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHhCCCCCCC
Q 001708 845 EFSDAA-STVYSWWQYQFCDVFIEAIKPYFAGDNPAFASERSAAQHVLWVCLETGLRLLHPFMPFVTEELWQRLPQPKGC 923 (1022)
Q Consensus 845 ~f~~a~-~~i~~f~~~~l~~~Yle~~K~~l~~~~~~~~~~r~~a~~~L~~~L~~~l~LL~PfmPfitEelwq~L~~~~~~ 923 (1022)
+|+.|+ ..+++|+ ..||+|++..++ ....+|+.+|+.+++||||||||+|||||+.|+.
T Consensus 719 ~~~~Al~~~l~~~~--~~~n~Yl~~~~~--------------~~~~~l~~~l~~~~~LLaP~~P~~aEeiw~~Lg~---- 778 (938)
T TIGR00395 719 QTRKAVKYALFDLQ--ADVDWYRRRGGV--------------NHKDVLARYLETWIKLLAPFAPHFAEEMWEEVGN---- 778 (938)
T ss_pred CHHHHHHHHHHHHH--HHHHHHHHhCcc--------------hHHHHHHHHHHHHHHHhcCcccHHHHHHHHHcCC----
Confidence 999999 6799996 348999885321 1234899999999999999999999999999974
Q ss_pred CCCCCeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcceEEEEecCchhHHHH
Q 001708 924 ATKESIMLCEYPSAVEGWTDERAEFEMDLVESTVRCIRSLRAEVLGKQKNERLPAIAFCQTKGVSEII 991 (1022)
Q Consensus 924 ~~~~SI~~~~~P~~~~~~~~~~~e~~~~~v~~iv~~iRslr~~~~~k~i~~~~~v~i~~~~~~~~~~l 991 (1022)
.+||++++||++++.+.|+.++..++.++++++.||++.+. ..+....+.|.+.++...+.+
T Consensus 779 --~~sv~~~~wP~~~~~~~d~~~~~~~~~~~~~i~~iR~~~~~----~~~~p~~~~i~~~~~w~~~~~ 840 (938)
T TIGR00395 779 --EGFVSLAKFPEASEPAVDKEVEAAEEYLRNLVRDIQEIAKI----DASKPKRVYLYTSEDWKSQCL 840 (938)
T ss_pred --CCeEEecCCCCCCcccCCHHHHHHHHHHHHHHHHHHHhhcc----CCCCCcEEEEEECcHHHHHHH
Confidence 36999999999999889999999999999999888885321 113344667777665444433
No 20
>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1OBC_A 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 1QU3_A 1QU2_A ....
Probab=100.00 E-value=6.2e-146 Score=1321.73 Aligned_cols=563 Identities=41% Similarity=0.741 Sum_probs=490.2
Q ss_pred HHHHHHHHcCCcccC--CCCCCCcEEEECCCCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeeeeeccCCccChhHHHHH
Q 001708 155 SWYSWWENSGYFIAD--NKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVV 232 (1022)
Q Consensus 155 ~w~~~W~~~~~f~~~--~~~~k~~f~i~~pPPy~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG~D~~Glp~q~~v 232 (1022)
+||++|+++++|++. ..+++++|+|++||||+||.||||||+|++++|+++||+||+||+|+|+|||||||||||.+|
T Consensus 1 k~~~~W~~~~~~~~~~~~~~~~~~f~i~~~PPy~nG~lH~GH~~~~~~~D~i~Ry~rm~G~~v~~~~G~D~~Glpie~~v 80 (601)
T PF00133_consen 1 KWQKFWEENKLFEKQLEKNKNKPKFFIHDPPPYANGDLHIGHALNKTIKDIIARYKRMQGYNVLFPPGWDCHGLPIEAKV 80 (601)
T ss_dssp HHHHHHHHTTCCHHHHHCTTTSGEEEEEE---BTSSS-BHHHHHHHHHHHHHHHHHHCTTSEEEEEEEEB--SHHHHHHH
T ss_pred CHhHHHhhCCCcccccccCCCCCcEEEEeCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCcEeCCCCCcCCCCcchhhhH
Confidence 699999999999998 446788999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCccccChHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHHHcCcEEEcc
Q 001708 233 EKKLMRERKLTRHDIGREQFVSEVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDL 312 (1022)
Q Consensus 233 Ek~l~~~~~~~~~~~g~e~f~~~~~~~~~~~~~~i~~ql~rlG~s~DW~r~~~T~d~~~~~~v~~~F~~L~ekGlIyr~~ 312 (1022)
|++++.+.+++++++|+++|+++|++|++++.+.|++||++||+++||+|+|+||||.|+++|+|+|.+|+++|||||+.
T Consensus 81 ek~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~Dw~~~y~T~d~~y~~~v~~~F~~l~~kglIyr~~ 160 (601)
T PF00133_consen 81 EKKLGIKEKKDRKDLGREEFREECREWAEEFIEEQKEQFKRLGVSIDWDREYFTMDPEYEKFVWWQFKKLYEKGLIYRGK 160 (601)
T ss_dssp HHHTTTTSHHHCSCSTHHHHHHHHHHHHHHHHHHHHHHHHHTT--SECTCEEETTSHHHHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHhhcccccccccccccccchhhhcchhhhhhhhhhhhhhheeeecccCCceEECCccHhHHHHHHHHHHHhcCcEEeeC
Confidence 99987777778899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeecCCCCccccccccccccCCCceEEeecCccccccceeeEeEeeecCCCcc-eEEEeeccccccccCcEEEEcCC-
Q 001708 313 RLVNWDCVLRTAISDIEVDYVDIPKREMRNVPGYEKQVEFGVLTSFAYPLEGGLG-EIVVATTRVETMLGDTAIAIHPE- 390 (1022)
Q Consensus 313 ~~V~W~p~~~TaLsd~EVe~~~~~~~t~~~vp~y~~~~e~g~l~~~~y~l~~~~~-~l~v~TTrPeTl~g~~avaV~P~- 390 (1022)
+||+|||+|+|+|||+||+|+++. +..++++|++.+++. +|+|||||||||+||+||||||+
T Consensus 161 ~pv~w~p~~~t~lsd~Ev~~~~~~----------------~~~~~v~f~~~~~~~~~l~i~TtrPeTl~~~~ai~vnP~~ 224 (601)
T PF00133_consen 161 KPVNWCPSCQTALSDHEVEYKEVK----------------SPSIYVKFPLKDGEEVYLVIWTTRPETLPGNTAIAVNPDF 224 (601)
T ss_dssp EEEEEETTTTEEE-GGGEEEEEEE----------------EEEEEEEEEESSSSEEEEEEEES-GGGGGG-BEEEE-TTS
T ss_pred CCCCcCcccccchhhhhccccccc----------------CceEEEEEEecCccceEEEEEechhhHHhCCeeEEECCCc
Confidence 999999999999999999999876 456789999988765 99999999999999999999999
Q ss_pred ----------------------------ccccccccCCeeecCCCCCccceEeCCccccCCCCCCceecCCCCCcchHHH
Q 001708 391 ----------------------------DARYSHLHGKFAIHPFNGRKIPIICDAILVDPKFGTGAVKITPAHDPNDFDV 442 (1022)
Q Consensus 391 ----------------------------d~ry~~L~G~~~~~P~~~~~~pIi~~~~~V~~~~GTG~V~~~PaH~~~Dy~~ 442 (1022)
+.++++|+|++|.|||+++.+|||++++ |++++|||+||+|||||++||++
T Consensus 225 ~Y~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~L~g~~~~~P~~~~~~~vi~~~~-V~~~~GTGiV~~~Pah~~~Dy~~ 303 (601)
T PF00133_consen 225 DYVINGERYIVAKDLVEKLSKQEKTKLEDFRGKELVGLKYIHPLTGREVPVIPDDF-VDMDKGTGIVHSAPAHGPDDYEI 303 (601)
T ss_dssp EEEETTEEEEEEHHHHHHHHTTTSSSEEEEECHHHTTSEEE-TTSSSSEEEEEETT-S-SSSTTSEEEE-TTT-HHHHHH
T ss_pred cceeCCeeehHHHHHHHHHHhhhhhcccccCcceecCcEeccccccceeEEEcccc-cccccchhhhhhcccCCHHHHHH
Confidence 7789999999999999999999999995 99999999999999999999999
Q ss_pred HHHcCCceeeeeCCCCccccCCCCCCCCCChhhHHHHHHHHHHHcCCccccccccccccccccCCCceecccccccceec
Q 001708 443 GKRHNLEFINIFTDDGKINSNGGLEFEGMPRFKAREAVNEALKKKGLYRGAKDNEMRLGLCSRSNDVVEPMIKPQWYVNC 522 (1022)
Q Consensus 443 ~~~~~L~~i~iid~~G~~~e~~g~~f~G~~~~~ar~~vi~~L~~~gll~~~~~~~~~~p~c~Rs~~~i~~~~~~QWFi~~ 522 (1022)
|++|+|+++++||++|++++++| +|.||++++||+.|++.|+++|++++.+++.|+||+|||||++|++++++||||++
T Consensus 304 ~~~~~l~~~~~id~~G~~~~~~~-~~~G~~v~~ar~~ii~~L~~~g~l~~~~~~~~~~p~c~R~~~~ii~~~~~QWFi~~ 382 (601)
T PF00133_consen 304 GKKHNLPIINPIDEDGRFTEEAG-KFKGMKVFEAREKIIEDLKEKGLLLKIEEIEHSYPHCWRSGTPIIPRLTDQWFIKY 382 (601)
T ss_dssp HHHHHHCCGCCCCCTSTBBSCCS-TTTTSBHHHHHHHHHHHHHHTTSEEEEEEEEEEEEEETTTSCBEEEEEEEEEEEEH
T ss_pred HhhcCceeeEecCCCceEeeccc-ccCCceeeeccHHHHHHHHHhhhhccccccccccceecCCCCEEEecccceeEEec
Confidence 99999999999999999999999 99999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhhhccCCCceEEeccccHHHHHHHHhhccCccceeccCCCCccCcceeccCchhhhccCCCCcceEEecCH
Q 001708 523 NSMAMEALYAVMDDDKKKLELIPRQYTAEWRRWLEAIRDWCVSRQLWWGHQIPAWYVTLEDDELKELGSYNDHWIVARDE 602 (1022)
Q Consensus 523 ~~l~~~al~~v~~~~~~~i~~~P~~~~~~~~~wl~~l~DWcISRQ~~WG~pIP~~~~~~~~~~~~~~~~~~~~w~~~~~~ 602 (1022)
+++++++++++ .+|+|+|+..+++|.+||++++||||||||+||||||+|+|+.+++...... ....+.....
T Consensus 383 ~~~k~~~l~~~-----~~i~~~P~~~~~~~~~~i~~l~DWcISRQR~WG~PIPiw~~~~~~~~~~~~~--~~~~~~~~~~ 455 (601)
T PF00133_consen 383 DDWKKKALEAL-----EKIKFYPESYRKRFENWIDNLRDWCISRQRYWGTPIPIWYCEDCGEVLVIES--TIELIADRVE 455 (601)
T ss_dssp HHHHHHHHHHH-----HTSEESSSTCHHHHHHHHHT--EEE-EESSSSSEBETEEEETTSEEEECCGG--HHHHHHHHST
T ss_pred HHhHHHHHhhc-----ccceEEcccchhhhhhhccccccchhhccCCCCccceeeecccCcccccccc--cccccccccc
Confidence 99999999999 4899999999999999999999999999999999999999987653211000 0000000000
Q ss_pred HHH-----HHHHhhhcCCCCcccccCCCcEEEEeccCccccccccCCCC-ChhhhhcCCcCcccccccccchHHHHHHHH
Q 001708 603 KEA-----LAVANKKFSGKKFEMCQDPDVLDTWFSSGLFPLSVLGWPDD-TDDLKAFYPTSVLETGHDILFFWVARMVML 676 (1022)
Q Consensus 603 ~ea-----~~~~~~~~~~~~~~~~~d~DvlDtWFdSgl~p~s~lg~p~~-~~d~~~~~P~dl~~~G~Dil~fW~a~m~~~ 676 (1022)
... .......++.++..++|++||||||||||++|+++++||++ +.+|++|||+|++++|+||+++|+++|+++
T Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~dvlD~WfdSg~~~~~~~~~~~~~~~~~~~~~P~D~~~~G~D~~~~W~~~~l~~ 535 (601)
T PF00133_consen 456 KEGIDAWLHKPAEDKLPCCGGELRRDTDVLDTWFDSGLWPFAVLGWPENDREEFEYWYPVDLYIEGKDQIRGWFQSSLFL 535 (601)
T ss_dssp HHHHSCTSSHHHHHHHTTTSSEEEEHS-EE-HHHHHCTCHHHHTTSTTCSCHHHHHHSSBSEEEEEGGGTTTHHHHHHHH
T ss_pred cccccccccccccccccccccceEEeeeeccccccccCCcccccccccccchhccccCCcccccCCccchhhHHHHhHhh
Confidence 000 00112234556778999999999999999999999999986 889999999999999999999999999999
Q ss_pred HhhhcCCCCceEEEeccceeCCCCccceecCCcccCcchhhccccchhHHHhhhcCCCChHHHHHHHhcccCCCCCCCCC
Q 001708 677 GIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPE 756 (1022)
Q Consensus 677 ~~~l~~~~Pfk~V~~Hg~v~D~~GrKMSKSlGNvIdP~dvI~g~~l~~l~~~l~~~nl~~~e~~~a~~~~~~~~~~~i~~ 756 (1022)
+.+++++.||++|++||||+|.+|+|||||+||||+|.++|+ +
T Consensus 536 ~~~l~~~~pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~-------------------------------------~ 578 (601)
T PF00133_consen 536 SVALFGKEPFKKVITHGFVLDEDGRKMSKSKGNVIDPEDIIE-------------------------------------K 578 (601)
T ss_dssp HHHHSSSTSBSEEEEE--EEETTSSB-BTTTTB--BHHHHHH-------------------------------------H
T ss_pred ccccccCCchheeeecccccccceeecccCCCcccCHHHHHH-------------------------------------H
Confidence 999999999999999999999999999999999999999999 8
Q ss_pred CCchHHHHHHHhccCCCcccccc
Q 001708 757 CGTDALRFALVSYTAQSDKINLD 779 (1022)
Q Consensus 757 ~GaDaLR~~L~~~~~~~~Dinf~ 779 (1022)
||||+||||+++++..++|++||
T Consensus 579 yGaD~lRl~~~~~~~~~~D~~~s 601 (601)
T PF00133_consen 579 YGADALRLWLASSADPGQDINFS 601 (601)
T ss_dssp T-HHHHHHHHHHHS-TTS-EEE-
T ss_pred hCcHHHHHHHHhcCCcccCcccC
Confidence 99999999999889999999996
No 21
>KOG0433 consensus Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.6e-141 Score=1211.15 Aligned_cols=795 Identities=23% Similarity=0.338 Sum_probs=665.5
Q ss_pred CcCcCCCCCCCCcccccchhhhcCCCChhHHHHHHHHHHHcCCcccCCC-CCCCcEEEECCCCCCCCCCCcchhHHHHHH
Q 001708 123 AEEFVDPETPLGEKKRMSKQMAKEYNPSSVEKSWYSWWENSGYFIADNK-SSKPSFVIVLPPPNVTGALHIGHALTTAIQ 201 (1022)
Q Consensus 123 ~~~~~~~~t~~~~k~~~~~~~~~~y~p~~vE~~w~~~W~~~~~f~~~~~-~~k~~f~i~~pPPy~nG~LHiGHal~~~i~ 201 (1022)
.....+||| +.+-|.. ..+.+..+-|....++..... ..++.|++++ +||.||||||+|++++
T Consensus 18 s~T~~lpKt--~v~~Ns~----------gr~~q~~evi~~~~~~~~qls~~q~~~f~L~d----anG~lhlghalnkILk 81 (937)
T KOG0433|consen 18 SITSHLPKT--LVHFNST----------GRIGQVIEVIQPPEILSSQLSDQQRVEFELKD----ANGNLHLGHALNKILK 81 (937)
T ss_pred eeecCCCCC--ccccccc----------cchHHHHHHhCChHHHHHHHhhccCceEEEec----cCCCccchHHHHHHHH
Confidence 345778888 6665554 355557777777666665443 4567899999 9999999999999999
Q ss_pred HHHHHHHHhCCCeeeeeccCCccChhHHH-HHHHHHHHHhCCCccccChHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q 001708 202 DTIIRWRRMSGYNALWVPGMDHAGIATQV-VVEKKLMRERKLTRHDIGREQFVSEVWKWKDEYGGTILRQQRRLGASLDW 280 (1022)
Q Consensus 202 Dii~Ry~rm~G~~Vl~~pG~D~~Glp~q~-~vEk~l~~~~~~~~~~~g~e~f~~~~~~~~~~~~~~i~~ql~rlG~s~DW 280 (1022)
||+.||+.++|++|+|+|||||||||++. .+-+.+..+. ..++.-+.++.++.++++-++++++.|+|||++.||
T Consensus 82 dIinr~~laqg~~alyvpGwDchGLPiEs~kalssl~~~~----~~~s~leiR~~Ar~fA~~AIk~Q~e~F~r~gv~aDW 157 (937)
T KOG0433|consen 82 DIINRILLAQGKSALYVPGWDCHGLPIESTKALSSLTESE----GSRTPLEIRAKARIFADEAIKKQMEAFRRWGVTADW 157 (937)
T ss_pred HHHHHHHHhcCceeccCCCCCcCCCchHHHHHhhhhhhcc----ccCCcHHHHHHHHHHHHHHHHHHHHHHHHheeeccC
Confidence 99999999999999999999999999984 5554442222 356677889999999999999999999999999999
Q ss_pred CCccccCChhhHHHHHHHHHHHHHcCcEEEcceeeeecCCCCccccccccccccCCCceEEeecCccccccceeeEeEee
Q 001708 281 SRECFTMDEKRSKAVTEAFVRLYKEGLIYRDLRLVNWDCVLRTAISDIEVDYVDIPKREMRNVPGYEKQVEFGVLTSFAY 360 (1022)
Q Consensus 281 ~r~~~T~d~~~~~~v~~~F~~L~ekGlIyr~~~~V~W~p~~~TaLsd~EVe~~~~~~~t~~~vp~y~~~~e~g~l~~~~y 360 (1022)
.++|.||||+|+.++.++|.+||++|||||+.+||+|||+++|||+++|+||.+.+.++ -.||+|
T Consensus 158 ~n~Y~T~~~~ye~aQL~iF~~lyekgLvyR~~KPVyWSpSSRTALAEaELEYn~nH~S~---------------S~Y~~F 222 (937)
T KOG0433|consen 158 ENPYVTKSPSYEAAQLDIFAKLYEKGLVYRSFKPVYWSPSSRTALAESELEYNDNHQST---------------SAYFRF 222 (937)
T ss_pred CCceeecChHHHHHHHHHHHHHHhccceeccCCcceecCcchhhhhhhhccCCcCCcce---------------eEEEEE
Confidence 99999999999999999999999999999999999999999999999999999988654 346777
Q ss_pred ecCCC------------cceEEEeeccccccccCcEEEEcCCccc-------------c---------------------
Q 001708 361 PLEGG------------LGEIVVATTRVETMLGDTAIAIHPEDAR-------------Y--------------------- 394 (1022)
Q Consensus 361 ~l~~~------------~~~l~v~TTrPeTl~g~~avaV~P~d~r-------------y--------------------- 394 (1022)
|+.+. ..+++||||+|||||+|.||||||+..+ |
T Consensus 223 ~L~~~S~~~~~~~~~~~~iyaLVWTTTPWTlPsN~Ai~~n~~~~Yslv~~~~~~~~~~ylvas~L~~~fe~~~~~k~~i~ 302 (937)
T KOG0433|consen 223 KLINFSSSAHSEDSKIPQIYALVWTTTPWTLPSNNAISVNSAIQYSLVQFDNNPTSTFYLVASKLLEEFEKSSDRKCKIV 302 (937)
T ss_pred eccCCccccccCCCccCcEEEEEEeCCCccccccceeeeccccceEEEEeccCCcceEEEEccchhhhhhhhcCcceeee
Confidence 76431 3589999999999999999999999531 1
Q ss_pred -----ccccCCeeecCCC-CCccceEeCCccccCCCCCCceecCCCCCcchHHHHHHcCCceeeeeCCCCccccCCCCCC
Q 001708 395 -----SHLHGKFAIHPFN-GRKIPIICDAILVDPKFGTGAVKITPAHDPNDFDVGKRHNLEFINIFTDDGKINSNGGLEF 468 (1022)
Q Consensus 395 -----~~L~G~~~~~P~~-~~~~pIi~~~~~V~~~~GTG~V~~~PaH~~~Dy~~~~~~~L~~i~iid~~G~~~e~~g~~f 468 (1022)
.+|.|.+|.||+. +..+|++.++ ||+++.|||+||+|||||++||.+|..+||++.+++|++|+++.++|+.+
T Consensus 303 ~t~~g~~L~~~~Y~~pl~~~~~~P~l~g~-hVT~~~GTGLVHTAP~HG~eDYlv~l~~~l~~~s~VD~~G~yT~ea~~~l 381 (937)
T KOG0433|consen 303 GTVKGANLIGRRYKHPLHNELGLPILEGP-HVTDTVGTGLVHTAPAHGFEDYLVAISKGLRVESFVDSRGCYTREAGHDL 381 (937)
T ss_pred eecchhhccCceecCcCccccCCcccccc-ceecCcccceeecCCCCChHHHHHHhhcCCCcccccCCCCceeccccccc
Confidence 2688999999975 4679999999 59999999999999999999999999999999999999999999999889
Q ss_pred CCCChhh-HHHHHHHHHHHcCCccccccccccccccccCCCceecccccccceechHHHHHHHHhhhccCCCceEEeccc
Q 001708 469 EGMPRFK-AREAVNEALKKKGLYRGAKDNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKLELIPRQ 547 (1022)
Q Consensus 469 ~G~~~~~-ar~~vi~~L~~~gll~~~~~~~~~~p~c~Rs~~~i~~~~~~QWFi~~~~l~~~al~~v~~~~~~~i~~~P~~ 547 (1022)
.|+.|.+ ..+.|+..|. ..+++.+++.|+||++|||++|++.|.++|||+++++++..|.+++ ++|+|+|..
T Consensus 382 ~Gk~VL~eG~k~vl~~l~--~~iv~~sky~HsYPYDWRTKKPvIiRAseQWFi~~e~~k~~A~~al-----~~Vk~~P~~ 454 (937)
T KOG0433|consen 382 DGKEVLGEGQKIVLRLLN--HDIVHVSKYVHSYPYDWRTKKPVIIRASEQWFIDVEEIKKRASMAL-----DDVKVAPGD 454 (937)
T ss_pred ccchhhccccHhHHHHHh--hhhhhhhcccccCCcccccCCceEEecchhheeeHHhhhhHHHHHH-----hhceeCCcc
Confidence 9999975 5678888888 7789999999999999999999999999999999999999999999 789999999
Q ss_pred cHHHHHHHHhhccCccceeccCCCCccCcceeccCchhhhc-----------cCCCCcceEEecCHHHHHHHHhhhcCCC
Q 001708 548 YTAEWRRWLEAIRDWCVSRQLWWGHQIPAWYVTLEDDELKE-----------LGSYNDHWIVARDEKEALAVANKKFSGK 616 (1022)
Q Consensus 548 ~~~~~~~wl~~l~DWcISRQ~~WG~pIP~~~~~~~~~~~~~-----------~~~~~~~w~~~~~~~ea~~~~~~~~~~~ 616 (1022)
..+++..+|..+++|||||||.||+|||++|....+..+.. ...+.+.|+....++-..++.-...|..
T Consensus 455 ~~~rl~~~~~~R~~WCISRQR~WGvPIP~ly~k~~~~~l~ns~~~~h~~~~~eqeGsD~Ww~~~~eellpe~~~~e~~~~ 534 (937)
T KOG0433|consen 455 SDLRLKQLVTTRPSWCISRQRVWGVPIPALYDKNGGSYLSNSLIEWHAKLTREQEGSDVWWEIDVEELLPEEEVREIPDI 534 (937)
T ss_pred hHHHHHHHHcCCCcceeeeccccCCcceeEEecCCCceeehHHHHHHHHHHHHHhCCcceEeCChhHhCcHhhhcccchh
Confidence 99999999999999999999999999999998766543211 1123467877655433223322233334
Q ss_pred CcccccCCCcEEEEeccCccccccccCCCCChhhhhcCCcCcccccccccchHHHHHHHHHhhhcCCCCceEEEecccee
Q 001708 617 KFEMCQDPDVLDTWFSSGLFPLSVLGWPDDTDDLKAFYPTSVLETGHDILFFWVARMVMLGIKLGGEVPFTKVYLHPMIR 696 (1022)
Q Consensus 617 ~~~~~~d~DvlDtWFdSgl~p~s~lg~p~~~~d~~~~~P~dl~~~G~Dil~fW~a~m~~~~~~l~~~~Pfk~V~~Hg~v~ 696 (1022)
...+.+++|+||+|||||..+-++++- +.-.++|++.+|.||++|||+++++++++..+++||++|++|||++
T Consensus 535 a~ey~kgtDimDVWFDSGssWs~v~~~-------~~~~~aDv~LEG~DQ~rGWFQSsLLTsvA~q~kAPYk~vivHGFtl 607 (937)
T KOG0433|consen 535 ASEYKKGTDIMDVWFDSGSSWSAVLDN-------EREHVADVYLEGVDQFRGWFQSSLLTSVAVQNKAPYKKVIVHGFTL 607 (937)
T ss_pred HHHhccCCceeeeEecCCCcceeecCC-------CCCcceeeEEecchhcchHHHHHHHHHHHHhccCCchheeeeeeEe
Confidence 456889999999999999988777752 2236789999999999999999999999999999999999999999
Q ss_pred CCCCccceecCCcccCcchhhccccchhHHHhhhcCCCChHHHHHHHhcccCCCCCCCCCCCchHHHHHHHhccCCCccc
Q 001708 697 DAHGRKMSKSLGNVIDPLEVINGISLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKI 776 (1022)
Q Consensus 697 D~~GrKMSKSlGNvIdP~dvI~g~~l~~l~~~l~~~nl~~~e~~~a~~~~~~~~~~~i~~~GaDaLR~~L~~~~~~~~Di 776 (1022)
|++|.|||||+||||||..||+|- . .-|.||||+||||++. +....|+
T Consensus 608 DE~G~KMSKSlGNVidP~~v~~G~-~------------------------------k~payGaD~LR~WVA~-~~~t~d~ 655 (937)
T KOG0433|consen 608 DENGNKMSKSLGNVVDPTMVTDGS-L------------------------------KQPAYGADGLRFWVAG-SENTGES 655 (937)
T ss_pred cCCccchhhcccCcCCHHHHhCCc-c------------------------------cCCCccccceeeeeec-ccccCce
Confidence 999999999999999999999961 1 1358999999999985 4455699
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHHHhhcCCCCCCC-CCCCCCCCChhhHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHH
Q 001708 777 NLDIQRVVGYRQWCNKLWNAVRFSMSKLGEGFVPP-LKLHPHNLPFSCKWILSVLNKAISRTASSLNSYEFSDAASTVYS 855 (1022)
Q Consensus 777 nf~~~~~~~~r~f~nkl~N~~rf~l~~l~~~~~p~-~~~~~~~~~~~D~wil~~L~~~~~~v~~a~e~~~f~~a~~~i~~ 855 (1022)
....+.+..+..-+.|++|++||+++++.+ |++. ..++...+..+|+++|.+|+.+++++.+.|++|+|+++++.+..
T Consensus 656 ~iGp~il~qv~e~l~K~R~T~RfllGnl~d-~~~~~~~~p~~dl~~iDq~~L~ql~~~~~~i~e~Y~~Y~f~kVv~~lq~ 734 (937)
T KOG0433|consen 656 KIGPKILDQVDEKLIKFRNTFRFLLGNLQD-FDGKQVKFPLKDLRYIDQYMLQQLDAIVKRIIELYNDYKFRKVVNDLQQ 734 (937)
T ss_pred ecCHHHHHHHHHHHHHHHhHHHHHhhcccc-cCCccccccchhhhhhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 999999999999999999999999999986 7665 45566688899999999999999999999999999999999999
Q ss_pred HHHhhhhHHHHHhhcccccCC--CcccHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHhCCCCCCCCCCCCeeecc
Q 001708 856 WWQYQFCDVFIEAIKPYFAGD--NPAFASERSAAQHVLWVCLETGLRLLHPFMPFVTEELWQRLPQPKGCATKESIMLCE 933 (1022)
Q Consensus 856 f~~~~l~~~Yle~~K~~l~~~--~~~~~~~r~~a~~~L~~~L~~~l~LL~PfmPfitEelwq~L~~~~~~~~~~SI~~~~ 933 (1022)
|+.++|+++|++++|++||++ ++. .|+++|+||+++|..+++.++||+||++||+||+||... +-++...
T Consensus 735 F~~~~lSa~YfdivKDRLY~~~~~s~---~rrs~QttL~h~l~~l~~~iaPIlP~LaeEvwq~lP~~~-----~~~f~~k 806 (937)
T KOG0433|consen 735 FLQRNLSAFYFDIVKDRLYCDKVGSE---SRRSAQTTLHHLLHNLAHIISPILPHLAEEVWQHLPGSH-----EKIFRLK 806 (937)
T ss_pred HHHHHhhHHHHHHHhhhhhcCCCCcH---HHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHhCCCCC-----CcccccC
Confidence 999999999999999999998 454 899999999999999999999999999999999999422 2299999
Q ss_pred CCCCCCCCCCHHHHHH--HHHHHHHHHHHHHHHHHhccC-CCCCcceEEEEecCc-----hhHHHHHHHHHHHHHhhccC
Q 001708 934 YPSAVEGWTDERAEFE--MDLVESTVRCIRSLRAEVLGK-QKNERLPAIAFCQTK-----GVSEIIRSHELEIVTLSTSS 1005 (1022)
Q Consensus 934 ~P~~~~~~~~~~~e~~--~~~v~~iv~~iRslr~~~~~k-~i~~~~~v~i~~~~~-----~~~~~l~~~~~~I~~L~~v~ 1005 (1022)
||..++.|..+..+.. +..++++....-+......+. .++...+++....+. ++.++++....++..+.+..
T Consensus 807 ~~~l~s~~~~~~~~~~~~~~~vl~~~~~~~~~l~la~~~~~~~s~L~~~~~~ht~~~~~~~L~~~l~~~~~~~~~~~~~~ 886 (937)
T KOG0433|consen 807 WEDLHSGLLTPHDQLSKHMKFVLEVRNELESTLGLAIDTSKKGSVLQVTPEYHTIRIYESELPELLNVSQVILHENRDEN 886 (937)
T ss_pred ccccchhhcCchhHHHHHHHHHHHHHHhHHHHHHhhhhhhhccceEEEEEeecccccchhHHHHHHHHhhhhhhhhhccc
Confidence 9999999988776655 566666654443332222111 234455555544333 33345555555555554444
Q ss_pred cEE
Q 001708 1006 SLK 1008 (1022)
Q Consensus 1006 ~v~ 1008 (1022)
.+.
T Consensus 887 ~~~ 889 (937)
T KOG0433|consen 887 SVE 889 (937)
T ss_pred chH
Confidence 333
No 22
>PRK12300 leuS leucyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.7e-138 Score=1300.69 Aligned_cols=701 Identities=25% Similarity=0.383 Sum_probs=588.1
Q ss_pred CCcchhHHHHHHHHHHHHHHhCCCeeeeeccCCccChhHHHHHHHHHHH---------H-hCCCccccChHHHHHHHHHH
Q 001708 190 LHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMR---------E-RKLTRHDIGREQFVSEVWKW 259 (1022)
Q Consensus 190 LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG~D~~Glp~q~~vEk~l~~---------~-~~~~~~~~g~e~f~~~~~~~ 259 (1022)
||||||+|++++|+++||+||+||+|+|++||||||+||+..+|+.... + .|+++.++ ++| ..|++|
T Consensus 1 lHiGH~~~~t~~D~i~Ry~rm~G~~Vl~~~G~d~~GlPie~~ae~~~~~~~~~~~~~~~~~gi~~~~i--~~f-~~~~~~ 77 (897)
T PRK12300 1 LHVGHGRTYTIGDVIARYKRMRGYNVLFPMAFHVTGTPILGIAERIARGDPETIELYKSLYGIPEEEL--EKF-KDPEYI 77 (897)
T ss_pred CccchhHHHHHHHHHHHHHHcCCCcCCCCCCCCCCCcCHHHHHHHhhccchhHHHHHHHHcCCCHHHH--HHh-cCHHHH
Confidence 7999999999999999999999999999999999999999999863210 1 14433333 345 347999
Q ss_pred HHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHHHcCcEEEcceeeeecCCCCccccccccccccCCCce
Q 001708 260 KDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDLRLVNWDCVLRTAISDIEVDYVDIPKRE 339 (1022)
Q Consensus 260 ~~~~~~~i~~ql~rlG~s~DW~r~~~T~d~~~~~~v~~~F~~L~ekGlIyr~~~~V~W~p~~~TaLsd~EVe~~~~~~~t 339 (1022)
+++|.+.+++||++||+|+||+|+|+||||.|+++|+|+|.+|+++||||||.++|+|||.|+|+|||+||++.+..+
T Consensus 78 ~~~~~~~~~~~~~~lG~~~DW~r~y~T~dp~y~~~v~w~F~~L~ekGliyrg~~~v~wcp~~~t~lad~e~~~~e~~~-- 155 (897)
T PRK12300 78 VEYFSEEAKEDMKRIGYSIDWRREFTTTDPEYSKFIEWQFRKLKEKGLIVKGSHPVRYCPNDNNPVGDHDLLDGEEPE-- 155 (897)
T ss_pred HHHhHHHHHHHHHHhCcEEeCCCCeECCChhHHHHHHHHHHHHHHCCCEecCCEeeeeCCCCCCCchHHHHhcCCCCC--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998753322
Q ss_pred EEeecCccccccceeeEeEeeecCCCcceEEEeeccccccccCcEEEEcCCcc---------------------ccc---
Q 001708 340 MRNVPGYEKQVEFGVLTSFAYPLEGGLGEIVVATTRVETMLGDTAIAIHPEDA---------------------RYS--- 395 (1022)
Q Consensus 340 ~~~vp~y~~~~e~g~l~~~~y~l~~~~~~l~v~TTrPeTl~g~~avaV~P~d~---------------------ry~--- 395 (1022)
.+.+++++|+ .+++.+|+|||||||||+|||||||||+++ +|+
T Consensus 156 ------------~~~~~~ikf~-~~~~~~l~~~TtrPeTl~g~tai~V~P~~~Y~~~~~~~e~~i~a~~~~~~~~~~~~~ 222 (897)
T PRK12300 156 ------------IVEYTLIKFE-ESEDLILPAATLRPETIFGVTNLWVNPDATYVKAEVDGEKWIVSKEAAEKLSFQDRD 222 (897)
T ss_pred ------------cceEEEEEEe-CCCceEEEEEECCcchhccceEEEECCCCcEEEEEECCEEEEEeHHHHHHHhcCcCC
Confidence 2344567776 555678999999999999999999999997 354
Q ss_pred ----------cccCCeeecCCCCCccceEeCCccccCCCCCCceecCCCCCcchHHHHHHcC--------Cceeeee---
Q 001708 396 ----------HLHGKFAIHPFNGRKIPIICDAILVDPKFGTGAVKITPAHDPNDFDVGKRHN--------LEFINIF--- 454 (1022)
Q Consensus 396 ----------~L~G~~~~~P~~~~~~pIi~~~~~V~~~~GTG~V~~~PaH~~~Dy~~~~~~~--------L~~i~ii--- 454 (1022)
+|+|++|.|||.++.+||+++++ |++++|||+||+|||||++||+++++++ |+++.++
T Consensus 223 ~~~~~~~~G~~l~G~~~~~Pl~~~~ipil~~~~-V~~~~GTGvV~~~Pah~~~Dy~~~~~~~~~~~~~~~l~~i~ii~v~ 301 (897)
T PRK12300 223 VEIIEEIKGSELIGKKVKNPVTGKEVPILPADF-VDPDNGTGVVMSVPAHAPYDYVALRDLKKNKELLDVIEPIPLIEVE 301 (897)
T ss_pred ceEEEEeehHHhcCCEEECCCCCCeEEEeccCe-eecCCCeeeEEeCCCCCHHHHHHHHHhccccccccccCCcceEecC
Confidence 79999999999999999999995 9999999999999999999999999998 7766555
Q ss_pred --------------------C---------------CCCccccCCCCCCCCCChhhHHHHHHHHHHHcCCcccccccccc
Q 001708 455 --------------------T---------------DDGKINSNGGLEFEGMPRFKAREAVNEALKKKGLYRGAKDNEMR 499 (1022)
Q Consensus 455 --------------------d---------------~~G~~~e~~g~~f~G~~~~~ar~~vi~~L~~~gll~~~~~~~~~ 499 (1022)
| .+|+|++++| +|+|++++|||+.|++.|+++|++++..+++|
T Consensus 302 ~~g~~~a~~~~~~~~~~~~~d~~l~~a~~~~y~~~f~~G~~~~~~g-~~~G~~v~eA~~~I~~~L~~~g~~~~~~~~~~- 379 (897)
T PRK12300 302 GYGEFPAKEVVEKLGIKSQEDPELEEATKEVYRAEFHKGVLKENTG-EYAGKPVREAREKITKDLIEKGIADIMYEFSN- 379 (897)
T ss_pred CcCcccHHHHHHHhCCCCccchhHHHHHHHhhhccccceEEeeccc-CcCCeEHHHHHHHHHHHHHHCCCeEEEEecCC-
Confidence 3 4899998888 99999999999999999999999999988888
Q ss_pred ccccccCCCceeccc-ccccceech--HHHHHHHHhhhccCCCceEEeccccHHHHHHHHhhccCccceeccCCCCccCc
Q 001708 500 LGLCSRSNDVVEPMI-KPQWYVNCN--SMAMEALYAVMDDDKKKLELIPRQYTAEWRRWLEAIRDWCVSRQLWWGHQIPA 576 (1022)
Q Consensus 500 ~p~c~Rs~~~i~~~~-~~QWFi~~~--~l~~~al~~v~~~~~~~i~~~P~~~~~~~~~wl~~l~DWcISRQ~~WG~pIP~ 576 (1022)
+|+|||||++|++++ ++||||+++ ++++++++++ ++|+|+|++.++++.+||+|++||||||||+||||||+
T Consensus 380 ~~~~~R~~~~~i~~~~~~QWFi~~~~~~~k~~~~~~~-----~~~~~~P~~~~~~~~~~l~~l~DW~ISRqr~WGtpiP~ 454 (897)
T PRK12300 380 RPVYCRCGTECVVKVVKDQWFIDYSDPEWKELAHKAL-----DNMEIIPEEYRKEFENTIDWLKDRACARRRGLGTRLPW 454 (897)
T ss_pred CCcCcCCCCEEEEEecCCceEEEcCcHHHHHHHHHHH-----ccCEEECHHHHHHHHHHHhhhhhcceeeccccCCcCCc
Confidence 578889999999865 699999998 7999999998 67999999999999999999999999999999999995
Q ss_pred ---ceeccCchhhhccCCCCcceEEecCHHHHHHHHhhhcCCCCcccccCCCcEEEEeccCccc---cccccCCCC----
Q 001708 577 ---WYVTLEDDELKELGSYNDHWIVARDEKEALAVANKKFSGKKFEMCQDPDVLDTWFSSGLFP---LSVLGWPDD---- 646 (1022)
Q Consensus 577 ---~~~~~~~~~~~~~~~~~~~w~~~~~~~ea~~~~~~~~~~~~~~~~~d~DvlDtWFdSgl~p---~s~lg~p~~---- 646 (1022)
|.++. +.+++.|+.++.+++..++ ++.....+ .++++|+||.++..+ ....|||.+
T Consensus 455 ~~~w~~es----l~ds~iY~~~~~i~~~l~~--------~g~~~~~l--~~~~~D~~~~~~~~~~~~~~~sg~p~~~~~~ 520 (897)
T PRK12300 455 DEEWIIES----LSDSTIYMAYYTIAHKIRE--------YGIKPEQL--TPEFFDYVFLGKGDPEEVSKKTGIPKEILEE 520 (897)
T ss_pred cCCEEeee----ccccchhhhHHHHHHHHHH--------cCCChHHC--ChhhCceEEeCCCccccCchhcCCCHHHHHH
Confidence 55432 2223333322222111111 11110011 245666666543322 123455543
Q ss_pred -ChhhhhcCCcCcccccccccchHHHHHHHHHhhhcCCCCc-eEEEeccceeCCCCccceecCCcccCcchhhccccchh
Q 001708 647 -TDDLKAFYPTSVLETGHDILFFWVARMVMLGIKLGGEVPF-TKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLEG 724 (1022)
Q Consensus 647 -~~d~~~~~P~dl~~~G~Dil~fW~a~m~~~~~~l~~~~Pf-k~V~~Hg~v~D~~GrKMSKSlGNvIdP~dvI~g~~l~~ 724 (1022)
+.+|++|||+|++++|+||++||..++++++.++.+..|| ++|++||||++ +|+|||||+||||||.++|+
T Consensus 521 ~~~~f~~~~P~D~~~~GkDii~~Hl~~~~~~~~a~~~~~~~Pk~v~~hG~vl~-~G~KMSKS~GNvVdp~eii~------ 593 (897)
T PRK12300 521 MREEFLYWYPVDWRHSGKDLIPNHLTFFIFNHVAIFPEEKWPRGIVVNGFVLL-EGKKMSKSKGNVIPLRKAIE------ 593 (897)
T ss_pred HHHHHhccCCceEEEeeeccCccHHHHHHHHHHHhcCCCccCcEEEEcceEEE-CCccccCcCCCCCCHHHHHH------
Confidence 4679999999999999999999999999999999998888 99999999998 89999999999999999999
Q ss_pred HHHhhhcCCCChHHHHHHHhcccCCCCCCCCCCCchHHHHHHHhccCCCcccccchhhhHHHHHHHHHHHHHHHHHHhhc
Q 001708 725 LHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLDIQRVVGYRQWCNKLWNAVRFSMSKL 804 (1022)
Q Consensus 725 l~~~l~~~nl~~~e~~~a~~~~~~~~~~~i~~~GaDaLR~~L~~~~~~~~Dinf~~~~~~~~r~f~nkl~N~~rf~l~~l 804 (1022)
+||||+|||||++.++.++|++|+.+.+.+++++++++||+++++.+..
T Consensus 594 -------------------------------~yGaDalRl~L~~~~~~~~D~~fs~~~v~~~~~~l~r~~~~~~~~~~~~ 642 (897)
T PRK12300 594 -------------------------------EYGADVVRLYLTSSAELLQDADWREKEVESVRRQLERFYELAKELIEIG 642 (897)
T ss_pred -------------------------------HcChHHHHHHHHhCCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 8999999999999889999999999999999999999999999876432
Q ss_pred CCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHhhhhHHHHHhhcccccCCCcccHHHH
Q 001708 805 GEGFVPPLKLHPHNLPFSCKWILSVLNKAISRTASSLNSYEFSDAASTVYSWWQYQFCDVFIEAIKPYFAGDNPAFASER 884 (1022)
Q Consensus 805 ~~~~~p~~~~~~~~~~~~D~wil~~L~~~~~~v~~a~e~~~f~~a~~~i~~f~~~~l~~~Yle~~K~~l~~~~~~~~~~r 884 (1022)
. . ...+..|+||+++++.+++.+.++|++|+|+.|++.++.|+++ .+|+|++.+++
T Consensus 643 ~-----~-----~~~~~~D~wils~l~~~i~~v~~~~e~~~~~~A~~~i~~~l~~-~~n~Yi~~~k~------------- 698 (897)
T PRK12300 643 G-----E-----EELRFIDKWLLSRLNRIIKETTEAMESFQTRDAVQEAFYELLN-DLRWYLRRVGE------------- 698 (897)
T ss_pred C-----c-----cccCHhHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH-HHHHHHHhcch-------------
Confidence 1 1 1345789999999999999999999999999999998877644 47999998764
Q ss_pred HHHHHHHHHHHHHHHHHHhchhhHHHHHHHHhCCCCCCCCCCCCeeeccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 001708 885 SAAQHVLWVCLETGLRLLHPFMPFVTEELWQRLPQPKGCATKESIMLCEYPSAVEGWTDERAEFEMDLVESTVRCIRSLR 964 (1022)
Q Consensus 885 ~~a~~~L~~~L~~~l~LL~PfmPfitEelwq~L~~~~~~~~~~SI~~~~~P~~~~~~~~~~~e~~~~~v~~iv~~iRslr 964 (1022)
.++.+|+.+|+.+++||+|||||+|||||+.|+. .+||+++.||++++.+.|+.++..++.++++++.+|++|
T Consensus 699 -~~~~~l~~~l~~~~~lLaPf~P~~aEeiw~~L~~------~~sv~~~~wP~~~~~~~d~~~~~~~~~~~~~i~~ir~~~ 771 (897)
T PRK12300 699 -ANNKVLREVLEIWIRLLAPFTPHLAEELWHKLGG------EGFVSLEKWPEPDESKIDEEAELAEEYVKRLIEDIREIL 771 (897)
T ss_pred -HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHcCC------CCeEEeCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3577999999999999999999999999999974 269999999999999999999999999999999999999
Q ss_pred HHhccCCCCCcceEEEEecCchhHHHHHHHHHHHHHhhccCcE
Q 001708 965 AEVLGKQKNERLPAIAFCQTKGVSEIIRSHELEIVTLSTSSSL 1007 (1022)
Q Consensus 965 ~~~~~k~i~~~~~v~i~~~~~~~~~~l~~~~~~I~~L~~v~~v 1007 (1022)
+.. +++. ..++|.+.++...+. .+.|+...|++++
T Consensus 772 ~~~---~~~~-~~~~i~~~~~~~~~~----~~~~~~~~n~k~~ 806 (897)
T PRK12300 772 KVA---KIKP-KKVYIYVAPDWKYEV----LEIAAENGDVKEA 806 (897)
T ss_pred HHc---CCCC-ceEEEEECCHHHHHH----HHHHHHhhcHHHH
Confidence 987 6643 467776665544332 3344444454443
No 23
>KOG0434 consensus Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=9.2e-134 Score=1134.28 Aligned_cols=787 Identities=23% Similarity=0.383 Sum_probs=688.0
Q ss_pred hcCCCChhHHHHHHHHHHHcCCcccCCC--CCCCcEEEECCCCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeeeeeccC
Q 001708 144 AKEYNPSSVEKSWYSWWENSGYFIADNK--SSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGM 221 (1022)
Q Consensus 144 ~~~y~p~~vE~~w~~~W~~~~~f~~~~~--~~k~~f~i~~pPPy~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG~ 221 (1022)
++.+|...-|.+..++|.+.+.|+...+ +++|+|.+.+|||++||.+|.||.|+.+|+|++.||..|+||.|-..+||
T Consensus 5 ~~n~nfp~eEEkvle~W~e~~aF~~slk~sk~rp~ftFyDGPPFATGlPHyGHiLa~TIKDiVtRya~~~G~hVeRRFGW 84 (1070)
T KOG0434|consen 5 PENFNFPKEEEKVLEFWREIDAFHTSLKLSKGRPKFTFYDGPPFATGLPHYGHILASTIKDIVTRYATQTGHHVERRFGW 84 (1070)
T ss_pred cccCCCchhHHHHHHHHHHhhHHHHHHHhhCCCCceeeccCCccccCCCccchhhhhhHHHHHHHHhhccccceeeeccc
Confidence 4567777899999999999999987654 68899999999999999999999999999999999999999999999999
Q ss_pred CccChhHHHHHHHHHHHHhCCCcc----ccChHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHH
Q 001708 222 DHAGIATQVVVEKKLMRERKLTRH----DIGREQFVSEVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTE 297 (1022)
Q Consensus 222 D~~Glp~q~~vEk~l~~~~~~~~~----~~g~e~f~~~~~~~~~~~~~~i~~ql~rlG~s~DW~r~~~T~d~~~~~~v~~ 297 (1022)
||||+|+|..+.|+| |++.. .+|.+++..+|+..+..|...+++...|||-|+|+++.|.||+|.|.+.|+|
T Consensus 85 D~HGlPVE~eIDKkL----gI~g~~dV~kmGI~kYN~ECR~IVmrYssEWe~tv~RlGRWidF~ndYkTmyp~FMESvWw 160 (1070)
T KOG0434|consen 85 DTHGLPVEYEIDKKL----GITGRDDVMKMGIDKYNNECRKIVMRYSSEWEKTVERLGRWIDFDNDYKTLYPSFMESVWW 160 (1070)
T ss_pred ccCCCccceeechhc----CCCCHHHHHHHhHHhHhHHHHHHHHHHHHHHHHHHHhhccceeccCCcceecHHHHHHHHH
Confidence 999999888888776 66543 4899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCcEEEcceeeeecCCCCcccccccc--ccccCCCceEEeecCccccccceeeEeEeeecCCC-cceEEEeec
Q 001708 298 AFVRLYKEGLIYRDLRLVNWDCVLRTAISDIEV--DYVDIPKREMRNVPGYEKQVEFGVLTSFAYPLEGG-LGEIVVATT 374 (1022)
Q Consensus 298 ~F~~L~ekGlIyr~~~~V~W~p~~~TaLsd~EV--e~~~~~~~t~~~vp~y~~~~e~g~l~~~~y~l~~~-~~~l~v~TT 374 (1022)
+|.+||++|+||||.+..+||..|.|+|||.|- .|+|+.++.++ +.||+.+. ...++.|||
T Consensus 161 vFkeL~~kglVYRG~kVMP~STac~TPLSNFEa~QNYKdV~DPav~----------------v~F~li~~~~~slvAWTT 224 (1070)
T KOG0434|consen 161 VFKELHEKGLVYRGFKVMPYSTACTTPLSNFEAQQNYKDVPDPAVF----------------VAFPLIGDPNVSLVAWTT 224 (1070)
T ss_pred HHHHHHhcCceecceeeeccccccCCcccchhcccCcccCCCCeEE----------------EEeeccCCcceeEEEEec
Confidence 999999999999999999999999999999998 58999988642 56777543 568999999
Q ss_pred cccccccCcEEEEcCCccc----------------------c----------------ccccCCeeecCCC-------CC
Q 001708 375 RVETMLGDTAIAIHPEDAR----------------------Y----------------SHLHGKFAIHPFN-------GR 409 (1022)
Q Consensus 375 rPeTl~g~~avaV~P~d~r----------------------y----------------~~L~G~~~~~P~~-------~~ 409 (1022)
+|||||+|.|+||||+... | +.|.|++|..+|. ..
T Consensus 225 TPWTLPSNlal~Vnp~~~Yvki~dk~~~k~yil~esrl~~l~k~~~~~~~eiler~~G~~L~g~kYeplF~YF~~~~~~~ 304 (1070)
T KOG0434|consen 225 TPWTLPSNLALCVNPDFQYVKIKDKTTGKKYILMESRLGELYKNPKNDNYEILERFQGAALVGLKYEPLFPYFAETFEEG 304 (1070)
T ss_pred CCccCccceeEEEcCCeEEEEEEeccCCeEEEEeHHHHHHHhcCcccccHHHHHhcccccccCcccCccchHHHHHhccC
Confidence 9999999999999999531 1 3689999987763 34
Q ss_pred ccceEeCCccccCCCCCCceecCCCCCcchHHHHHHcCC-----ceeeeeCCCCccccCCCCCCCCCChhhHHHHHHHHH
Q 001708 410 KIPIICDAILVDPKFGTGAVKITPAHDPNDFDVGKRHNL-----EFINIFTDDGKINSNGGLEFEGMPRFKAREAVNEAL 484 (1022)
Q Consensus 410 ~~pIi~~~~~V~~~~GTG~V~~~PaH~~~Dy~~~~~~~L-----~~i~iid~~G~~~e~~g~~f~G~~~~~ar~~vi~~L 484 (1022)
...|+.|+| |+.+.|||+||++||.|.+||.+|...|+ -++|+||++|+++.+.. .|+|..+.||.+.||+.|
T Consensus 305 aFrvl~d~y-Vt~~sGTGiVH~AP~FGe~Dy~~c~~~giI~~d~~~~cpVDe~G~~Tsev~-dfaG~YVKDaDK~Ii~~l 382 (1070)
T KOG0434|consen 305 AFRVLSDDY-VTEDSGTGIVHQAPAFGEEDYRACVANGIIRKDSLPPCPVDESGLFTSEVT-DFAGQYVKDADKLIIRSL 382 (1070)
T ss_pred ceEEeccCc-EecCCCceeeecCCccChhhHHHHHHcCcccCCCCCCCccccCCccccccc-cccceeeccchHHHHHHH
Confidence 578999996 99999999999999999999999998876 57899999999999998 999999999999999999
Q ss_pred HHcCCccccccccccccccccCCCceecccccccceechHHHHHHHHhhhccCCCceEEeccccH-HHHHHHHhhccCcc
Q 001708 485 KKKGLYRGAKDNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKLELIPRQYT-AEWRRWLEAIRDWC 563 (1022)
Q Consensus 485 ~~~gll~~~~~~~~~~p~c~Rs~~~i~~~~~~QWFi~~~~l~~~al~~v~~~~~~~i~~~P~~~~-~~~~~wl~~l~DWc 563 (1022)
++.|.++....+.|+||+||||.+|+++++.|.||++++.+.+++++.. .+..|+|...+ +||.+||+|.+||.
T Consensus 383 k~~g~lv~~~~i~HsYPFCWRSDTPLiYraVPsWFVrVk~~v~~ll~nn-----~~t~WVP~~ikeKRF~NWL~nARDW~ 457 (1070)
T KOG0434|consen 383 KASGRLVKASQITHSYPFCWRSDTPLIYRAVPSWFVRVKNIVDQLLRNN-----MKTHWVPQNIKEKRFANWLKNARDWN 457 (1070)
T ss_pred HhcCceeeeeeeeeccCceecCCChHHHhhccHhhhhHHHHHHHHHhcc-----cccccCChhhhHHHHHHHHhhhhhcc
Confidence 9999999999999999999999999999999999999999999999854 78999999875 79999999999999
Q ss_pred ceeccCCCCccCcceeccCchhhhccCCCCcceEEecCHHHHHHHHhh-------------hcCC--CCcccccCCCcEE
Q 001708 564 VSRQLWWGHQIPAWYVTLEDDELKELGSYNDHWIVARDEKEALAVANK-------------KFSG--KKFEMCQDPDVLD 628 (1022)
Q Consensus 564 ISRQ~~WG~pIP~~~~~~~~~~~~~~~~~~~~w~~~~~~~ea~~~~~~-------------~~~~--~~~~~~~d~DvlD 628 (1022)
|||+|+||+|||.|..++-.+ -+.-.+..|..+.... ..|. .+..+.|.++|+|
T Consensus 458 iSRnR~WGTPIpLWVSdD~ee-----------vVcigSi~eLEeLSG~kItDlHRe~iD~itIps~~gkg~l~Rv~eVfD 526 (1070)
T KOG0434|consen 458 ISRNRYWGTPIPLWVSDDYEE-----------VVCIGSIKELEELSGVKITDLHRESIDHITIPSKKGKGVLHRVSEVFD 526 (1070)
T ss_pred cccccccCCCcceEEccCCce-----------EEEeccHHHHHHhcCCcchhhhhhhcCceecccCCCCcceehhhhHhh
Confidence 999999999999997543211 1111222222221111 1232 2356899999999
Q ss_pred EEeccCccccccccCCCC-ChhhhhcCCcCcccccccccchHHHHHHHHHhhhcCCCCceEEEeccceeCCCCccceecC
Q 001708 629 TWFSSGLFPLSVLGWPDD-TDDLKAFYPTSVLETGHDILFFWVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSL 707 (1022)
Q Consensus 629 tWFdSgl~p~s~lg~p~~-~~d~~~~~P~dl~~~G~Dil~fW~a~m~~~~~~l~~~~Pfk~V~~Hg~v~D~~GrKMSKSl 707 (1022)
+||.||.+|++..+||.+ ++.|+.-||+|+.-+|-||.||||+.++.+|.+|+|++||++|+++|+|+.++|+|||||+
T Consensus 527 CWFESGSMPYAq~HyPFenk~~fe~~fPadFIaEGlDQTRGWFYTL~VlsT~LF~kppfkNvIvnGlVLAeDG~KMSKrl 606 (1070)
T KOG0434|consen 527 CWFESGSMPYAQRHYPFENKEEFEENFPADFIAEGLDQTRGWFYTLLVLSTALFGKPPFKNVIVNGLVLAEDGKKMSKRL 606 (1070)
T ss_pred hhhccCCCcchhhcCCccchHHHhhcCchHhhhhccccccchhhHHHHHHHHHcCCCcchheeEeeeEEecccHHHhhhh
Confidence 999999999999999985 5789999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccCcchhhccccchhHHHhhhcCCCChHHHHHHHhcccCCCCCCCCCCCchHHHHHHHhccC-CCcccccchhhhHH-
Q 001708 708 GNVIDPLEVINGISLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTA-QSDKINLDIQRVVG- 785 (1022)
Q Consensus 708 GNvIdP~dvI~g~~l~~l~~~l~~~nl~~~e~~~a~~~~~~~~~~~i~~~GaDaLR~~L~~~~~-~~~Dinf~~~~~~~- 785 (1022)
.|.-||..||+ +|||||||+||+++.. ....+.|..+.+..
T Consensus 607 kNYPdP~~iin-------------------------------------kYGADalRlYLInSPVvraE~LkFkeeGVrev 649 (1070)
T KOG0434|consen 607 KNYPDPSLIIN-------------------------------------KYGADALRLYLINSPVVRAENLKFKEEGVREV 649 (1070)
T ss_pred hcCCCHHHHHH-------------------------------------hhcchheeeeeecCccccccccccchhhHHHH
Confidence 99999999999 9999999999997542 46688898888755
Q ss_pred HHHHHHHHHHHHHHHHhhcC-------CCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHH
Q 001708 786 YRQWCNKLWNAVRFSMSKLG-------EGFVPPLKLHPHNLPFSCKWILSVLNKAISRTASSLNSYEFSDAASTVYSWWQ 858 (1022)
Q Consensus 786 ~r~f~nkl~N~~rf~l~~l~-------~~~~p~~~~~~~~~~~~D~wil~~L~~~~~~v~~a~e~~~f~~a~~~i~~f~~ 858 (1022)
....+--+||+++|+.++.. ..|++...+ ...+.+|+||++..+.++.-+++-|++|++..++-.+..|+
T Consensus 650 vk~v~lPW~NsyrF~~qn~~~~~~~~g~~f~~~~~~--~S~NvmDrWI~a~~qslv~fv~~eM~~YrLytVvp~llkfi- 726 (1070)
T KOG0434|consen 650 VKDVLLPWYNSYRFLVQNAALLKKETGKDFVFDDSV--TSSNVMDRWILASTQSLVGFVREEMDQYRLYTVVPRLLKFI- 726 (1070)
T ss_pred HHhhhhhhhHHHHHHHHHHHHhccccCCcccccccc--ccchhHHHHHHHHHHHHHHHHHHHHHheehhhhHHHHHHHH-
Confidence 45577789999999987742 134443322 25678999999999999999999999999999999999998
Q ss_pred hhhhHHHHHhhcccccCCCcccHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHhCCCCCC----CCCCCCeeeccC
Q 001708 859 YQFCDVFIEAIKPYFAGDNPAFASERSAAQHVLWVCLETGLRLLHPFMPFVTEELWQRLPQPKG----CATKESIMLCEY 934 (1022)
Q Consensus 859 ~~l~~~Yle~~K~~l~~~~~~~~~~r~~a~~~L~~~L~~~l~LL~PfmPfitEelwq~L~~~~~----~~~~~SI~~~~~ 934 (1022)
.+|.|||+...+.++.+++..- +.-.|..+|+.+|-++.++|+||+||+||.+||+|..... .....|||..+|
T Consensus 727 D~LTNwYiR~nRrrlkGe~G~~--d~~~AL~~Lf~vL~t~~r~MaPfTPF~tE~iyq~Lk~~~~~~~~~~~~~SVHfl~~ 804 (1070)
T KOG0434|consen 727 DELTNWYIRFNRRRLKGENGEH--DCHNALNVLFEVLFTLVRVMAPFTPFFTEYIYQNLKKYIPIDKNEKSERSVHFLSY 804 (1070)
T ss_pred HHhhhhheehhhhhhcCCCchH--HHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhcCCccccCCccceeEEeec
Confidence 9999999999999998764321 5667899999999999999999999999999999964321 134579999999
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcce---EEEEecCchhHHHHHHHHHHHHHhhccCcEEEec
Q 001708 935 PSAVEGWTDERAEFEMDLVESTVRCIRSLRAEVLGKQKNERLP---AIAFCQTKGVSEIIRSHELEIVTLSTSSSLKALS 1011 (1022)
Q Consensus 935 P~~~~~~~~~~~e~~~~~v~~iv~~iRslr~~~~~k~i~~~~~---v~i~~~~~~~~~~l~~~~~~I~~L~~v~~v~i~~ 1011 (1022)
|.+.+..+|+.+|..++.++.+|..+|.+|... +|+.+.+ +.|..+|++..+.++.+.+.|...+||.+|.+..
T Consensus 805 P~~~~~~~de~ve~~v~~m~siIdl~R~iRern---~islKtPLK~~ivi~~d~~~ledik~l~~yI~eElNVr~v~~~~ 881 (1070)
T KOG0434|consen 805 PTPKEELIDETVERRVERMQSIIDLARNIRERN---TISLKTPLKELIVIHSDEEYLEDIKSLERYILEELNVREVVFTS 881 (1070)
T ss_pred CCchhhhccchHHHHHHHHHHHHHHHHHHhhcc---CCcccCchhheEEEcCCHHHHHHHHHHHHHHHHhhcceeeeecc
Confidence 999999999999999999999999999999997 7754443 4566677788888888999999999999998775
Q ss_pred CC
Q 001708 1012 FG 1013 (1022)
Q Consensus 1012 ~~ 1013 (1022)
++
T Consensus 882 d~ 883 (1070)
T KOG0434|consen 882 DE 883 (1070)
T ss_pred cc
Confidence 54
No 24
>PRK00390 leuS leucyl-tRNA synthetase; Validated
Probab=100.00 E-value=4.6e-134 Score=1248.55 Aligned_cols=652 Identities=28% Similarity=0.421 Sum_probs=538.3
Q ss_pred hhcCCCChhHHHHHHHHHHHcCCcccCCCCCCCcEEEECCCCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeeeeeccCC
Q 001708 143 MAKEYNPSSVEKSWYSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMD 222 (1022)
Q Consensus 143 ~~~~y~p~~vE~~w~~~W~~~~~f~~~~~~~k~~f~i~~pPPy~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG~D 222 (1022)
|.+.|||.++|++|+++|+++++|++..+++ ++|++++|||||||.|||||+++++++|+++||+||+|++|+|++|||
T Consensus 1 ~~~~y~~~~iE~~w~~~W~~~~~f~~~~~~~-~~~~i~~~pPy~nG~lHiGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D 79 (805)
T PRK00390 1 MMERYNPKEIEKKWQKYWEENKTFKTTEDSS-KKYYVLDMFPYPSGGLHMGHVRNYTIGDVIARYKRMQGYNVLHPMGWD 79 (805)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCcccCccCC-CCEEEEccCCCCCCCcchhhhHHHHHHHHHHHHHHhcCCcccccCccC
Confidence 3567999999999999999999999876433 479999999999999999999999999999999999999999999999
Q ss_pred ccChhHHHHHHHHHHHHhCCCccccChHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHH
Q 001708 223 HAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRL 302 (1022)
Q Consensus 223 ~~Glp~q~~vEk~l~~~~~~~~~~~g~e~f~~~~~~~~~~~~~~i~~ql~rlG~s~DW~r~~~T~d~~~~~~v~~~F~~L 302 (1022)
|||+|||..+++ .|++ +++|++++++.|++||++||+++||+++|+||||+|.++|+++|.+|
T Consensus 80 ~~Glpie~~a~~-----~g~~------------~~~~~~~~~~~~~~~~~~lGi~~Dw~~~~~T~~~~~~~~v~~~f~~L 142 (805)
T PRK00390 80 AFGLPAENAAIK-----TGTH------------PAEWTYENIANMKKQLKSLGFSYDWSREIATCDPEYYKWTQWIFLKL 142 (805)
T ss_pred CCCCHHHHHHHH-----cCCC------------HHHHHHHHHHHHHHHHHHhCCcccCCCCeecCCHHHHHHHHHHHHHH
Confidence 999999888765 3544 35899999999999999999999999999999999999999999999
Q ss_pred HHcCcEEEcceeeeecCCCCccccccccccc--cCCCce---------EEeecCccccc---------------------
Q 001708 303 YKEGLIYRDLRLVNWDCVLRTAISDIEVDYV--DIPKRE---------MRNVPGYEKQV--------------------- 350 (1022)
Q Consensus 303 ~ekGlIyr~~~~V~W~p~~~TaLsd~EVe~~--~~~~~t---------~~~vp~y~~~~--------------------- 350 (1022)
+++|+|||+.++|+|||.|+|+|||+||++. +..+.. +++++.|++.+
T Consensus 143 ~~~Gliy~~~~~v~wcp~~~t~La~~ev~~~~~~~~~~~~~~~~~~~~f~~i~~~~~~L~~~l~~~~~w~~~v~~~~~~w 222 (805)
T PRK00390 143 YEKGLAYRKESPVNWCPVDGTVLANEQVIDGRCWRCGAPVEKKELRQWFLKITDYADELLDDLDKLEDWPEKVKTMQRNW 222 (805)
T ss_pred HHCCCEEEecCEEEecCCcCCCCCHHHhhCCeecccCCeeEEEecceeeEecchhHHHHHHHHHhhccCcHHHHHHHHhh
Confidence 9999999999999999999999999999742 222222 23444332211
Q ss_pred -cceeeEeEeeecCCCcceEEEeeccccccccCcEEEEcCCcccccc---------------------------------
Q 001708 351 -EFGVLTSFAYPLEGGLGEIVVATTRVETMLGDTAIAIHPEDARYSH--------------------------------- 396 (1022)
Q Consensus 351 -e~g~l~~~~y~l~~~~~~l~v~TTrPeTl~g~~avaV~P~d~ry~~--------------------------------- 396 (1022)
..+..++++|++.+++.+|+|||||||||+||+||||||+++++..
T Consensus 223 ig~~~~~~i~f~~~~~~~~l~v~TTrPeTl~g~~aiav~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 302 (805)
T PRK00390 223 IGRSEGAEVTFKVEDSDEKIEVFTTRPDTLFGATYLVLAPEHPLVEKLAEQNPAVAAFIEECKKKSDLERQTETKEKTGV 302 (805)
T ss_pred ccccceEEEEEEccCCCCEEEEEeCCchHhhcceEEEECCCChhHHhhhcchHHHHHHHHHHhhhcchhhhhcccceeee
Confidence 1134567899998777899999999999999999999999987643
Q ss_pred ccCCeeecCCCCCccceEeCCccccCCCCCCceecCCCCCcchHHHHHHcCCceeeeeCCCC--------------cccc
Q 001708 397 LHGKFAIHPFNGRKIPIICDAILVDPKFGTGAVKITPAHDPNDFDVGKRHNLEFINIFTDDG--------------KINS 462 (1022)
Q Consensus 397 L~G~~~~~P~~~~~~pIi~~~~~V~~~~GTG~V~~~PaH~~~Dy~~~~~~~L~~i~iid~~G--------------~~~e 462 (1022)
|+|++|.||+.++++||+.+++ |++++|||+||+|||||++||++|++|||+++++||++| +|++
T Consensus 303 l~g~~~~~P~~~~~ipi~~~~~-V~~~~GTG~V~~~Pah~~~D~~~~~~~~L~~~~~i~~~g~~~~~~~~~~~~~g~~~~ 381 (805)
T PRK00390 303 FTGLYAIHPLTGEKIPVWIADY-VLMDYGTGAVMAVPAHDQRDFEFAKKYGLPIKPVIEPGDGDEDISEEAYTGDGVLIN 381 (805)
T ss_pred ecCcEEECCCCCCeeeEEEecc-ccCCCCCCeEEEcCCCCHHHHHHHHHcCCCceeeeCCCCcccccccccccCCeEEEe
Confidence 5899999999999999999995 999999999999999999999999999999999998544 4442
Q ss_pred CCCCCCCCCChhhHHHHHHHHHHHcCCccccccccccccccccCCCceecccccccceechHHHHHHHHhhhccCCCceE
Q 001708 463 NGGLEFEGMPRFKAREAVNEALKKKGLYRGAKDNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKLE 542 (1022)
Q Consensus 463 ~~g~~f~G~~~~~ar~~vi~~L~~~gll~~~~~~~~~~p~c~Rs~~~i~~~~~~QWFi~~~~l~~~al~~v~~~~~~~i~ 542 (1022)
.| .|.|+.+++||++|++.|+++|++. +.+.
T Consensus 382 -~~-~~~Gl~~~~a~~~Ii~~L~~~g~~~-----------------------------------------------~~v~ 412 (805)
T PRK00390 382 -SG-ELDGLDSEEAKEAIIAWLEEKGLGK-----------------------------------------------RKVN 412 (805)
T ss_pred -cc-ccCCCCHHHHHHHHHHHHHHcCCCC-----------------------------------------------CceE
Confidence 26 8999999999999999999999831 1122
Q ss_pred EeccccHHHHHHHHhhccCccceeccCCCCccCcceeccCchh-hhc--c---CCCCcceEEe--cCHHHHHHHHhhhcC
Q 001708 543 LIPRQYTAEWRRWLEAIRDWCVSRQLWWGHQIPAWYVTLEDDE-LKE--L---GSYNDHWIVA--RDEKEALAVANKKFS 614 (1022)
Q Consensus 543 ~~P~~~~~~~~~wl~~l~DWcISRQ~~WG~pIP~~~~~~~~~~-~~~--~---~~~~~~w~~~--~~~~ea~~~~~~~~~ 614 (1022)
+ +++|||||||||||||||+|||+.|+.. ... . -+ ......+ .....+..+....|+
T Consensus 413 ~--------------~l~DW~ISRQR~WG~PIPi~~~~~~g~~~v~~~~l~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~ 477 (805)
T PRK00390 413 Y--------------RLRDWGISRQRYWGEPIPIIHCEDCGIVPVPEEDLPVVLP-EDVVPDGTGSPLAKHPEWVNVTCP 477 (805)
T ss_pred E--------------ECCCccccccccCCCceeEEEECCCCceeCchHhhhhhhh-hhcccCCCCChhhhchhhhCCCcc
Confidence 2 4789999999999999999999877531 100 0 00 0000000 011112223334565
Q ss_pred CCCcccccCCCcEEEEeccCccccccccCCCC------ChhhhhcCCcCccccccccc-------chHHHHHHHHHhhhc
Q 001708 615 GKKFEMCQDPDVLDTWFSSGLFPLSVLGWPDD------TDDLKAFYPTSVLETGHDIL-------FFWVARMVMLGIKLG 681 (1022)
Q Consensus 615 ~~~~~~~~d~DvlDtWFdSgl~p~s~lg~p~~------~~d~~~~~P~dl~~~G~Dil-------~fW~a~m~~~~~~l~ 681 (1022)
.++..++|++|||||||||+ ||+..++||.+ +++|++|||+|++++|+|++ |||...|..+++ +.
T Consensus 478 ~~g~~~~re~Dv~DtwfdSs-w~~~~~~~p~~~~~~~~~~~~~~~~P~Dly~~G~D~~i~hL~y~Rf~~~~l~~~~~-~~ 555 (805)
T PRK00390 478 KCGKPARRETDTMDTFVGSS-WYYLRYTDPHNDEAPFDKEAANYWLPVDQYIGGIEHAVLHLLYARFFTKVLRDLGL-VS 555 (805)
T ss_pred ccCCCceeCCcccccccccc-cHHHHhcCcccccCcCChHHhhCcCCCcEEeccHHHHHHHHHHHHHHHHHHHHhhc-cc
Confidence 55667999999999999998 88888889863 56799999999999999965 555545555554 47
Q ss_pred CCCCceEEEeccceeCCCCccceecCCcccCcchhhccccchhHHHhhhcCCCChHHHHHHHhcccCCCCCCCCCCCchH
Q 001708 682 GEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDA 761 (1022)
Q Consensus 682 ~~~Pfk~V~~Hg~v~D~~GrKMSKSlGNvIdP~dvI~g~~l~~l~~~l~~~nl~~~e~~~a~~~~~~~~~~~i~~~GaDa 761 (1022)
++.||++|++|||| |||||+||+|+|.++|+ +||||+
T Consensus 556 ~~~Pfk~v~~~G~v------KMSKS~GN~i~p~~~i~-------------------------------------~ygaD~ 592 (805)
T PRK00390 556 SDEPFKKLLTQGMV------KMSKSKGNVVDPDDIIE-------------------------------------KYGADT 592 (805)
T ss_pred CCcchhhheecCcE------EeCCCCCCCCCHHHHHH-------------------------------------HcChHH
Confidence 89999999999999 99999999999999999 899999
Q ss_pred HHHHHHhccCCCcccccchhhhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHhhh
Q 001708 762 LRFALVSYTAQSDKINLDIQRVVGYRQWCNKLWNAVRFSMSKLGEGFVPPLKLHPHNLPFSCKWILSVLNKAISRTASSL 841 (1022)
Q Consensus 762 LR~~L~~~~~~~~Dinf~~~~~~~~r~f~nkl~N~~rf~l~~l~~~~~p~~~~~~~~~~~~D~wil~~L~~~~~~v~~a~ 841 (1022)
+|||+++.++.++|++|+.+.+.+.++|+++|||+++|.+++.. .+.+ .....|+|++++|+.++++++++|
T Consensus 593 lRl~l~~~~~~~~d~~~s~~~l~~~~~~l~kl~~~~~~~~~~~~-~~~~-------~~~~~D~~il~~l~~~i~~v~~~~ 664 (805)
T PRK00390 593 ARLFEMFAGPPEKDLEWSDSGVEGAYRFLQRVWRLVVDAKGEAG-ALDV-------AALSEDKELRRKLHKTIKKVTEDI 664 (805)
T ss_pred HHHHHHhcCCccCCcccCHHHHHHHHHHHHHHHHHHHHhhhccc-ccCc-------ccChhhHHHHHHHHHHHHHHHHHH
Confidence 99999988889999999999999999999999999999655432 1221 234689999999999999999999
Q ss_pred hcCCHHHHHHHHHHHHHhhhhHHHHHhhcccccCCCcccHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHhCCCCC
Q 001708 842 NSYEFSDAASTVYSWWQYQFCDVFIEAIKPYFAGDNPAFASERSAAQHVLWVCLETGLRLLHPFMPFVTEELWQRLPQPK 921 (1022)
Q Consensus 842 e~~~f~~a~~~i~~f~~~~l~~~Yle~~K~~l~~~~~~~~~~r~~a~~~L~~~L~~~l~LL~PfmPfitEelwq~L~~~~ 921 (1022)
++|+|+.|++.+++|+ ++++.+| + +.++.+|+.+++.+++||||||||+||||||.|+.
T Consensus 665 e~~~f~~ai~~l~~f~-n~lsk~~-~-----------------~~~~~~l~~~l~~l~~lLaPf~P~iaEElw~~L~~-- 723 (805)
T PRK00390 665 ERLRFNTAIAALMELV-NALYKAE-D-----------------EQDKAVLREALEILVRLLAPFAPHLAEELWEKLGH-- 723 (805)
T ss_pred HcCCHHHHHHHHHHHH-HHHHHHH-H-----------------HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHcCC--
Confidence 9999999999999998 5776665 1 13577999999999999999999999999999974
Q ss_pred CCCCCCCeeeccCCCCCCCCCCHHHHHHHHHHHHHHH
Q 001708 922 GCATKESIMLCEYPSAVEGWTDERAEFEMDLVESTVR 958 (1022)
Q Consensus 922 ~~~~~~SI~~~~~P~~~~~~~~~~~e~~~~~v~~iv~ 958 (1022)
.+||+.++||++++.+. .+..++.+.+++.
T Consensus 724 ----~~sv~~~~wP~~~~~~~---~~~~~~~~iqing 753 (805)
T PRK00390 724 ----EGSIANAPWPTADEAAL---VEDEVTIVVQVNG 753 (805)
T ss_pred ----CCeeEecCCCCCCHHHh---hhhccEEEEEEcc
Confidence 36899999999876543 2233444444444
No 25
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches.
Probab=100.00 E-value=4.5e-134 Score=1250.63 Aligned_cols=644 Identities=27% Similarity=0.401 Sum_probs=535.5
Q ss_pred CCChhHHHHHHHHHHHcCCcccCCCCCCCcEEEECCCCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeeeeeccCCccCh
Q 001708 147 YNPSSVEKSWYSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGI 226 (1022)
Q Consensus 147 y~p~~vE~~w~~~W~~~~~f~~~~~~~k~~f~i~~pPPy~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG~D~~Gl 226 (1022)
|||+++|++||++|+++++|++..++++++|++++|||||||.||||||++++++|+++||+||+||+|+|++||||||+
T Consensus 1 y~~~~iE~kwq~~W~~~~~f~~~~~~~k~k~~v~~~pPy~nG~lHiGH~~~~~~~Dvi~Ry~rm~G~~V~~~~G~D~~Gl 80 (842)
T TIGR00396 1 YNHIEIEEKWQQKWKENKVFKFTDDSNKPKYYILDMFPYPSGALHMGHVRNYTITDVLSRYYRMKGYNVLHPMGWDAFGL 80 (842)
T ss_pred CCHHHHHHHHHHHHHhcCCcccCCCCCCCCEEEEcCCCCCCCccccchhHHHHHHHHHHHHHHhcCCceeccCCcCCCCh
Confidence 89999999999999999999988766788999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhCCCccccChHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHHHcC
Q 001708 227 ATQVVVEKKLMRERKLTRHDIGREQFVSEVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEG 306 (1022)
Q Consensus 227 p~q~~vEk~l~~~~~~~~~~~g~e~f~~~~~~~~~~~~~~i~~ql~rlG~s~DW~r~~~T~d~~~~~~v~~~F~~L~ekG 306 (1022)
|||.++++ .|+++ ++|+.++++.|++||++||+++||+|+|+||||.|.++++|+|.+|+++|
T Consensus 81 pie~~a~~-----~g~~p------------~~~~~~~~~~~~~~~~~lG~~~Dw~~~~~T~d~~y~~~~~~~F~~L~~kG 143 (842)
T TIGR00396 81 PAENAAIK-----RGIHP------------AKWTYENIANMKKQLQALGFSYDWDREIATCDPEYYKWTQWIFLELFEKG 143 (842)
T ss_pred HHHHHHHH-----cCCCH------------HHHHHHHHHHHHHHHHHhCCcccCCCCcccCCHHHHHHHHHHHHHHHHCC
Confidence 99988764 46554 48999999999999999999999999999999999999999999999999
Q ss_pred cEEEcceeeeecCCCCcccccccccccc---CCCc---------eEEeecCcccccc----------------------c
Q 001708 307 LIYRDLRLVNWDCVLRTAISDIEVDYVD---IPKR---------EMRNVPGYEKQVE----------------------F 352 (1022)
Q Consensus 307 lIyr~~~~V~W~p~~~TaLsd~EVe~~~---~~~~---------t~~~vp~y~~~~e----------------------~ 352 (1022)
+|||+.++|||||.|+|+|||+||++.. ..+. .+++++.|++.+. -
T Consensus 144 liy~~~~~v~wcp~~~t~La~~ev~~~g~~~~~g~~v~~~~~~~~f~~i~~~~~~l~~~l~~~~~wp~~v~~~q~~wig~ 223 (842)
T TIGR00396 144 LAYVKEADVNWCPNDGTVLANEQVDSDGRSWRGGTPVEKKELKQWFLKITAYAEELLNDLEELDHWPESVKEMQRNWIGK 223 (842)
T ss_pred CeEeeccceEEeCCCCCCccHHHHhhcCccccCCCcceEeecceeEEehhhhHHHHHHHHhhhccccHHHHHHHHhcccc
Confidence 9999999999999999999999995422 1122 2456666553211 1
Q ss_pred eeeEeEeeecCCCcceEEEeeccccccccCcEEEEcCCccccc---------------------------------cccC
Q 001708 353 GVLTSFAYPLEGGLGEIVVATTRVETMLGDTAIAIHPEDARYS---------------------------------HLHG 399 (1022)
Q Consensus 353 g~l~~~~y~l~~~~~~l~v~TTrPeTl~g~~avaV~P~d~ry~---------------------------------~L~G 399 (1022)
+...+++|++.+++.+|+|||||||||+|++||||||+++++. .|+|
T Consensus 224 s~g~~i~f~~~~~~~~l~v~TTrP~Tl~g~~~iav~p~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~g 303 (842)
T TIGR00396 224 SEGVEITFKIADHKEKIAVFTTRPDTIFGVTYLALAPEHPLVEKIAENNPKVAAFIKKILQKTTTERTKETKLKKGVFTG 303 (842)
T ss_pred cceEEEEEEcCCCCCEEEEEeCCcHHhhhccEEEECCCCHHHHhhhcchHHHHHHHHHHhccCchhhhhhhcccccEecC
Confidence 2346788888876779999999999999999999999997532 2889
Q ss_pred CeeecCCCCCccceEeCCccccCCCCCCceecCCCCCcchHHHHHHcCCceeeeeCC------------CCccccCCCCC
Q 001708 400 KFAIHPFNGRKIPIICDAILVDPKFGTGAVKITPAHDPNDFDVGKRHNLEFINIFTD------------DGKINSNGGLE 467 (1022)
Q Consensus 400 ~~~~~P~~~~~~pIi~~~~~V~~~~GTG~V~~~PaH~~~Dy~~~~~~~L~~i~iid~------------~G~~~e~~g~~ 467 (1022)
++++||+.++.+||+.+++ |++++|||+||+|||||++||++|++|||+++++|++ +|+|++ .| .
T Consensus 304 ~~~~~P~~~~~ipi~~~~~-V~~~~GTG~V~~~Pahd~~D~~~~~k~~L~i~~vi~~~~~~~~~~~~~~~G~~~~-~~-~ 380 (842)
T TIGR00396 304 IKAIHPLTGEKIPIWVANY-VLASYGTGAVMGVPAHDERDFEFAQKYKLPIKVVIDPAGKNLKTQAFTEDGVLVN-SG-E 380 (842)
T ss_pred CEEECCCCCCEeEEEEeCc-ccCCCCCCeEEEcCCCCHHHHHHHHHhCCCcceeeCCcccccccccccCCceEec-ch-h
Confidence 9999999999999999995 9999999999999999999999999999999999983 788874 47 8
Q ss_pred CCCCChhhHHHHHHHHHHHcCCccccccccccccccccCCCceecccccccceechHHHHHHHHhhhccCCCceEEeccc
Q 001708 468 FEGMPRFKAREAVNEALKKKGLYRGAKDNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKLELIPRQ 547 (1022)
Q Consensus 468 f~G~~~~~ar~~vi~~L~~~gll~~~~~~~~~~p~c~Rs~~~i~~~~~~QWFi~~~~l~~~al~~v~~~~~~~i~~~P~~ 547 (1022)
|.||++++||+.|++.|+++|++.+. +.+
T Consensus 381 ~~Gl~~~~A~~~Ii~~L~~~g~~~~~-----------------------------------------------v~y---- 409 (842)
T TIGR00396 381 FNGLNSSEAREAIIAMLEKEGKGKRK-----------------------------------------------VNY---- 409 (842)
T ss_pred cCCCCHHHHHHHHHHHHHHcCCCCce-----------------------------------------------EEe----
Confidence 99999999999999999999984210 111
Q ss_pred cHHHHHHHHhhccCccceeccCCCCccCcceeccCchh-hhc-----cCCCC-cceEEec-CHHHHHHHHhhhcCCCCcc
Q 001708 548 YTAEWRRWLEAIRDWCVSRQLWWGHQIPAWYVTLEDDE-LKE-----LGSYN-DHWIVAR-DEKEALAVANKKFSGKKFE 619 (1022)
Q Consensus 548 ~~~~~~~wl~~l~DWcISRQ~~WG~pIP~~~~~~~~~~-~~~-----~~~~~-~~w~~~~-~~~ea~~~~~~~~~~~~~~ 619 (1022)
+++|||||||||||+|||+|||..|+.. .++ .-+.. ...-.+. .+.....+....||.|+..
T Consensus 410 ----------rlrDW~ISRQRyWG~PIPi~~~~~~g~~~v~~~~lp~~l~~~~~~~~~~~~pl~~~~~~~~~~cp~cg~~ 479 (842)
T TIGR00396 410 ----------RLRDWLFSRQRYWGEPIPIIHCEDGGAVPVPEEDLPVILPELVNYDPDGNSPLSRIQEWVNVTCPSCGKP 479 (842)
T ss_pred ----------ecccceeecccccCCceEEEEECCCCeEeCcchhcchhhhhhhhccCCCCCchhhhhhhhcCcCccCCCC
Confidence 4789999999999999999999877531 110 00000 0000011 1122223334567777778
Q ss_pred cccCCCcEEEEeccCccccccccCCC------CChhhhhcCCcCcccccccc--cchHHHHHHHHH----hhhcCCCCce
Q 001708 620 MCQDPDVLDTWFSSGLFPLSVLGWPD------DTDDLKAFYPTSVLETGHDI--LFFWVARMVMLG----IKLGGEVPFT 687 (1022)
Q Consensus 620 ~~~d~DvlDtWFdSgl~p~s~lg~p~------~~~d~~~~~P~dl~~~G~Di--l~fW~a~m~~~~----~~l~~~~Pfk 687 (1022)
++|++|||||||||| ||+..+.||. ++.++++|||+|++++|.|+ +++|++|+.... ..+.++.||+
T Consensus 480 ~~retDtmDtw~dSs-wy~~r~~~p~~~~~~~~~~~~~~~~PvD~yi~G~dhailHLlyaRf~~~~l~~~~~~~~~~Pfk 558 (842)
T TIGR00396 480 ALRETDTMDTFAGSS-WYYLRYLDPKNTDQPFDKEKAEYWLPVDLYIGGAEHAILHLLYARFWHKFLYDIGYVSTKEPFK 558 (842)
T ss_pred cEeCCCCCCCcccCC-HHHHHhhCCCCcCCCcChHHHhccCCCcEeeccHHHHHHHHHHHHHHHHHHHhccccCCCccHH
Confidence 999999999999998 5555544554 45678999999999999985 455555553222 2257899999
Q ss_pred EEEeccceeC----CCCc---------------------------cceecCCcccCcchhhccccchhHHHhhhcCCCCh
Q 001708 688 KVYLHPMIRD----AHGR---------------------------KMSKSLGNVIDPLEVINGISLEGLHKRLEEGNLDP 736 (1022)
Q Consensus 688 ~V~~Hg~v~D----~~Gr---------------------------KMSKSlGNvIdP~dvI~g~~l~~l~~~l~~~nl~~ 736 (1022)
+|++||||+| ++|+ |||||+||+|+|.++|+
T Consensus 559 ~l~~~G~Vl~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~KMSKS~GN~v~p~~ii~------------------ 620 (842)
T TIGR00396 559 KLINQGMVLGFYYPPNGKSPPDELTERDEKAKDKSGGELVVVGYEKMSKSKGNGIDPQEIVK------------------ 620 (842)
T ss_pred HHhccceEEeeeecCCCCccChhhhccccccccccCCcccccchhhhhhcCCCcCCHHHHHH------------------
Confidence 9999999999 8999 99999999999999999
Q ss_pred HHHHHHHhcccCCCCCCCCCCCchHHHHHHHhccCCCcccccchhhhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCC
Q 001708 737 KELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLDIQRVVGYRQWCNKLWNAVRFSMSKLGEGFVPPLKLHP 816 (1022)
Q Consensus 737 ~e~~~a~~~~~~~~~~~i~~~GaDaLR~~L~~~~~~~~Dinf~~~~~~~~r~f~nkl~N~~rf~l~~l~~~~~p~~~~~~ 816 (1022)
+||+|++|||+++.++.++|++|+.+.+++.++|++||||+++++++++.+ +.. ...
T Consensus 621 -------------------~ygaDalRl~~l~~~~~~~d~~~~~~~l~~~~~~l~kl~~~~~~~~~~~~~-~~~---~~~ 677 (842)
T TIGR00396 621 -------------------KHGADALRLYIMFMGPIAASLEWNDSGLEGARRFLDRVWNLFYNILGELDG-KTY---LTP 677 (842)
T ss_pred -------------------HcCchHHHHHHHhcCCcCCCCccCHHHHHHHHHHHHHHHHHHHHHHhhhcc-ccc---CCc
Confidence 899999999999888888999999999999999999999999998877642 210 111
Q ss_pred CCCChhhHHHHHHHHHHHHHHHhhhhcCC-HHHHHHHHHHHHHhhhhHHHHHhhcccccCCCcccHHHHHHHHHHHHHHH
Q 001708 817 HNLPFSCKWILSVLNKAISRTASSLNSYE-FSDAASTVYSWWQYQFCDVFIEAIKPYFAGDNPAFASERSAAQHVLWVCL 895 (1022)
Q Consensus 817 ~~~~~~D~wil~~L~~~~~~v~~a~e~~~-f~~a~~~i~~f~~~~l~~~Yle~~K~~l~~~~~~~~~~r~~a~~~L~~~L 895 (1022)
..++..|+||+++|+++++.++++|++|+ |+.|++.+++|+ +++++. . . ..+|+.+|
T Consensus 678 ~~l~~~d~~il~~l~~~i~~v~~~~e~y~~fn~ai~~l~~f~-n~L~~~-~----------------~----~~~l~~~l 735 (842)
T TIGR00396 678 TILEEAQKELRRDVHKFLKKVTEDLEKLESFNTAISAMMILL-NALYKA-K----------------K----DALYLEYL 735 (842)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH-HHHHhh-h----------------h----HHHHHHHH
Confidence 23467899999999999999999999998 999999999997 454431 0 0 13789999
Q ss_pred HHHHHHHhchhhHHHHHHHHhCCCCCCCCCCCCeeeccCCCCCCC
Q 001708 896 ETGLRLLHPFMPFVTEELWQRLPQPKGCATKESIMLCEYPSAVEG 940 (1022)
Q Consensus 896 ~~~l~LL~PfmPfitEelwq~L~~~~~~~~~~SI~~~~~P~~~~~ 940 (1022)
+.+++||||||||+|||||+.|+.. ..||+.++||++++.
T Consensus 736 ~~ll~lLaPf~PhiaEElW~~l~~~-----~~sv~~~~wP~~d~~ 775 (842)
T TIGR00396 736 KGFLTVLSPFAPHLAEELWEKLGSE-----PFIIKQAKWPKVDET 775 (842)
T ss_pred HHHHHHHhhhhhHHHHHHHHHhCCC-----CCeeecCCCCCCCHH
Confidence 9999999999999999999999741 258999999998754
No 26
>PLN02563 aminoacyl-tRNA ligase
Probab=100.00 E-value=5.2e-133 Score=1242.29 Aligned_cols=643 Identities=25% Similarity=0.394 Sum_probs=531.9
Q ss_pred hhcCCCChhHHHHHHHHHHHcCCcccCC--CCCCCcEEEECCCCCCCCC-CCcchhHHHHHHHHHHHHHHhCCCeeeeec
Q 001708 143 MAKEYNPSSVEKSWYSWWENSGYFIADN--KSSKPSFVIVLPPPNVTGA-LHIGHALTTAIQDTIIRWRRMSGYNALWVP 219 (1022)
Q Consensus 143 ~~~~y~p~~vE~~w~~~W~~~~~f~~~~--~~~k~~f~i~~pPPy~nG~-LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~p 219 (1022)
+++.|+|.++|++||++|+++++|+... +.++|+|+++++||||||. |||||+++++++|+++||+||+||+|+|++
T Consensus 76 ~~~~y~~~~iE~kwq~~W~e~~~f~~~~~~~~~k~k~~v~~~~PYpnG~~lHiGH~~~y~~~DviaRy~Rm~G~~Vl~~~ 155 (963)
T PLN02563 76 AKRAYPFHEIEPKWQRYWEENRTFRTPDDVDTSKPKFYVLDMFPYPSGAGLHVGHPEGYTATDILARYKRMQGYNVLHPM 155 (963)
T ss_pred cCCCCCHHHHHHHHHHHHHhCCCccccccccCCCCCEEEEeCCCCCCCcccchhhHHHHHHHHHHHHHHHhcCCeecccc
Confidence 5567999999999999999999999865 4567899999999999997 999999999999999999999999999999
Q ss_pred cCCccChhHHHHHHHHHHHHhCCCccccChHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHH
Q 001708 220 GMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAF 299 (1022)
Q Consensus 220 G~D~~Glp~q~~vEk~l~~~~~~~~~~~g~e~f~~~~~~~~~~~~~~i~~ql~rlG~s~DW~r~~~T~d~~~~~~v~~~F 299 (1022)
||||||||+|..+++ .|.++ .+|+.++++.|++||++||+|+||+|+|+||||.|+++++|+|
T Consensus 156 G~D~~GlPiE~~a~~-----~g~~p------------~~~~~~~i~~~~~q~~~lG~s~DW~r~~~T~dp~y~~~~q~~F 218 (963)
T PLN02563 156 GWDAFGLPAEQYAIE-----TGTHP------------KITTLKNIARFRSQLKSLGFSYDWDREISTTEPEYYKWTQWIF 218 (963)
T ss_pred cccccCcHHHHHHHH-----cCCCh------------HHhHHHHHHHHHHHHHHhCcEeeCCCCeecCCHHHHHHHHHHH
Confidence 999999999876643 45443 4789999999999999999999999999999999999999999
Q ss_pred HHHHHcCcEEEcceeeeecCCCCccccccccccc--cCCCc---------eEEeecCccccccce---------------
Q 001708 300 VRLYKEGLIYRDLRLVNWDCVLRTAISDIEVDYV--DIPKR---------EMRNVPGYEKQVEFG--------------- 353 (1022)
Q Consensus 300 ~~L~ekGlIyr~~~~V~W~p~~~TaLsd~EVe~~--~~~~~---------t~~~vp~y~~~~e~g--------------- 353 (1022)
.+|+++|||||+.++|||||.|+|+||++||++. +..+. .+++++.|++.+.-+
T Consensus 219 ~~L~~~GliY~~~~~v~wcp~~~T~La~~Ev~~~~~~~~~~~~~~~~~~q~f~~it~ya~~L~~~l~~~~wp~~v~~~q~ 298 (963)
T PLN02563 219 LQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGLSERGGHPVIRKPMRQWMLKITAYADRLLEDLDDLDWPESIKEMQR 298 (963)
T ss_pred HHHHHCCCEEeeeeeeeecCCcCCCCCHHHhhcCCCcCCCCceEEEecceeEEecchhHHHHHHhhhhcCCCHHHHHHHH
Confidence 9999999999999999999999999999999863 33333 245666665433221
Q ss_pred ------eeEeEeeecCC-----CcceEEEeeccccccccCcEEEEcCCcc---------------cccc-----------
Q 001708 354 ------VLTSFAYPLEG-----GLGEIVVATTRVETMLGDTAIAIHPEDA---------------RYSH----------- 396 (1022)
Q Consensus 354 ------~l~~~~y~l~~-----~~~~l~v~TTrPeTl~g~~avaV~P~d~---------------ry~~----------- 396 (1022)
...+++|++.+ .+.+|+|||||||||+|++||||||+++ +|.+
T Consensus 299 nwiG~s~g~~i~F~~~~~~~~~~~~~l~V~TTrPeTl~g~t~iav~p~~~yv~~~~~~~~~~~v~~y~~~~~~~~~~~~~ 378 (963)
T PLN02563 299 NWIGRSEGAELDFSVLDGEGKERDEKITVYTTRPDTLFGATYLVVAPEHPLLSSLTTAEQKEAVEEYVDAASRKSDLERT 378 (963)
T ss_pred HhccccceEEEEEEecCccccCCCCEEEEEeCCChHHhhccEEEECCCChhhHhhhcccchHHHHHHHHHHhchhHHhhh
Confidence 23567888765 2468999999999999999999999995 3321
Q ss_pred ---------ccCCeeecCCCCCccceEeCCccccCCCCCCceecCCCCCcchHHHHHHcCCceeeeeCC---C-----Cc
Q 001708 397 ---------LHGKFAIHPFNGRKIPIICDAILVDPKFGTGAVKITPAHDPNDFDVGKRHNLEFINIFTD---D-----GK 459 (1022)
Q Consensus 397 ---------L~G~~~~~P~~~~~~pIi~~~~~V~~~~GTG~V~~~PaH~~~Dy~~~~~~~L~~i~iid~---~-----G~ 459 (1022)
+.|.+++||++++.+||+.+++ |++++|||+||+|||||++||++|++|||+++++|+. + |.
T Consensus 379 ~~~~~k~g~~~g~~~~~P~~~~~iPI~~ad~-V~~~~GTGaVm~~PaHd~~D~~~a~k~~Lpi~~vI~~~d~~~~~~~~~ 457 (963)
T PLN02563 379 ELQKEKTGVFTGSYAINPATGEAIPIWVADY-VLGSYGTGAIMAVPAHDTRDFEFAQKFDLPIKWVVKPADGNEDDAEKA 457 (963)
T ss_pred hccceecccccCcEEeccCCCCeeEEEEecc-cCCCCCCCeEEEcCCCCHHHHHHHHHcCCCceeeeccCcccccccccc
Confidence 4699999999999999999995 9999999999999999999999999999999999942 1 33
Q ss_pred ccc-----CCC---CCCCCCChhhHHHHHHHHHHHcCCccccccccccccccccCCCceecccccccceechHHHHHHHH
Q 001708 460 INS-----NGG---LEFEGMPRFKAREAVNEALKKKGLYRGAKDNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALY 531 (1022)
Q Consensus 460 ~~e-----~~g---~~f~G~~~~~ar~~vi~~L~~~gll~~~~~~~~~~p~c~Rs~~~i~~~~~~QWFi~~~~l~~~al~ 531 (1022)
+++ |.| ..|.||.+++|++.|++.|+++|++.+
T Consensus 458 y~~~G~l~ns~~~~~~~~Gl~~~eA~~~Ii~~L~~~g~~~~--------------------------------------- 498 (963)
T PLN02563 458 YTGEGVIVNSSSSGLDINGLSSKEAAKKVIEWLEETGNGKK--------------------------------------- 498 (963)
T ss_pred ccCceeEecCCCcccccCCcCHHHHHHHHHHHHHhCCCCCC---------------------------------------
Confidence 332 224 139999999999999999999998521
Q ss_pred hhhccCCCceEEeccccHHHHHHHHhhccCccceeccCCCCccCcceeccCchhh-------hc----cCC----CCcce
Q 001708 532 AVMDDDKKKLELIPRQYTAEWRRWLEAIRDWCVSRQLWWGHQIPAWYVTLEDDEL-------KE----LGS----YNDHW 596 (1022)
Q Consensus 532 ~v~~~~~~~i~~~P~~~~~~~~~wl~~l~DWcISRQ~~WG~pIP~~~~~~~~~~~-------~~----~~~----~~~~w 596 (1022)
.++| +++|||||||||||+|||+|||..|+... +. ... ..+.|
T Consensus 499 --------~v~y--------------~lrDW~ISRQRyWG~PIPi~~c~~cg~~v~v~e~~Lpv~lpe~~~~~~~~~g~~ 556 (963)
T PLN02563 499 --------KVNY--------------KLRDWLFARQRYWGEPIPVVFLEDSGEPVPVPESDLPLTLPELDDFTPTGTGEP 556 (963)
T ss_pred --------eeEe--------------cCCCceEeeecccCCceEEEEEcCCCcEEecchHhCcccchhhhhcccCCCCCC
Confidence 1222 58999999999999999999998876321 10 000 01122
Q ss_pred EEecCHHHHHHHHhhhcCCCCcccccCCCcEEEEeccCccccccccCCCCCh------hhhhcCCcCccccccccc----
Q 001708 597 IVARDEKEALAVANKKFSGKKFEMCQDPDVLDTWFSSGLFPLSVLGWPDDTD------DLKAFYPTSVLETGHDIL---- 666 (1022)
Q Consensus 597 ~~~~~~~ea~~~~~~~~~~~~~~~~~d~DvlDtWFdSgl~p~s~lg~p~~~~------d~~~~~P~dl~~~G~Dil---- 666 (1022)
. +.....+....||.|+..++|++|||||||+|+++ +..+.||+++. .+++|||+|+|++|.|+.
T Consensus 557 p----l~~~~~~~~~~~p~cg~~~~RetDtmDtw~~Sswy-~~r~~~p~~~~~~~~~~~~~~w~PvD~yigG~dhailHL 631 (963)
T PLN02563 557 P----LAKAVSWVNTVDPSSGKPARRETNTMPQWAGSCWY-YLRFMDPKNSNALVDKEKEKYWMPVDLYVGGAEHAVLHL 631 (963)
T ss_pred c----hhcchhhhcCcCcCCCCCcEECCCcCCchhhccHH-HHHHhCCCccccccCHHHHhCcCCCcEeeccHHHHhhHh
Confidence 1 11222334445777777899999999999999854 55567888532 345799999999999994
Q ss_pred ---chHHHHHHHHHhhhcCCCCceEEEeccceeC---------CCCc---------------------------------
Q 001708 667 ---FFWVARMVMLGIKLGGEVPFTKVYLHPMIRD---------AHGR--------------------------------- 701 (1022)
Q Consensus 667 ---~fW~a~m~~~~~~l~~~~Pfk~V~~Hg~v~D---------~~Gr--------------------------------- 701 (1022)
|||+.+|+++|+ +.++.||++|++||||+| ++|+
T Consensus 632 lY~Rfw~~~l~~~g~-~~~~ePfk~ll~qGmVl~~~~~~~~~d~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 710 (963)
T PLN02563 632 LYARFWHKVLYDIGV-VSTKEPFQCLVNQGMILGEVEYTAFKDSDGEYVSADTADRLGELQQEKIPEEKVIKSGDSFVLK 710 (963)
T ss_pred HHHHHHHHHHHHhhc-cCCcccHHHHhccceeecCccccceecCCCcCcccccccccccccccccccccccccccccccc
Confidence 899999999999 578999999999999998 7888
Q ss_pred ------------cceecCCcccCcchhhccccchhHHHhhhcCCCChHHHHHHHhcccCCCCCCCCCCCchHHHHHHHhc
Q 001708 702 ------------KMSKSLGNVIDPLEVINGISLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSY 769 (1022)
Q Consensus 702 ------------KMSKSlGNvIdP~dvI~g~~l~~l~~~l~~~nl~~~e~~~a~~~~~~~~~~~i~~~GaDaLR~~L~~~ 769 (1022)
|||||+||||||.++|+ +||||+||||+++.
T Consensus 711 ~~~~~~~~~~~eKMSKSKGNvVdP~eiI~-------------------------------------kYGADaLRl~ll~~ 753 (963)
T PLN02563 711 DDPSIRLIARAHKMSKSRGNVVNPDDVVS-------------------------------------EYGADSLRLYEMFM 753 (963)
T ss_pred cCCcccccccccccccccCCcCCHHHHHH-------------------------------------HcCcHHHHHHHHhC
Confidence 99999999999999999 89999999999999
Q ss_pred cCCCcccccchhhhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHhhhhcCCHHHH
Q 001708 770 TAQSDKINLDIQRVVGYRQWCNKLWNAVRFSMSKLGEGFVPPLKLHPHNLPFSCKWILSVLNKAISRTASSLNSYEFSDA 849 (1022)
Q Consensus 770 ~~~~~Dinf~~~~~~~~r~f~nkl~N~~rf~l~~l~~~~~p~~~~~~~~~~~~D~wil~~L~~~~~~v~~a~e~~~f~~a 849 (1022)
++..+|++|+.+.+++.++|++++||++...... ...+.+.. .......|+|++++|+.++++++++|++|+|+.|
T Consensus 754 ap~~dd~~w~~~~V~g~~rfL~rlwn~~~~~~~~-~~~~~~~~---~~~~~~~d~~ll~kl~~~ikkVte~~e~y~FntA 829 (963)
T PLN02563 754 GPLRDSKTWSTSGVEGVHRFLGRTWRLVVGAPLP-DGSFRDGT---VVTDEEPSLEQLRLLHKCIAKVTEEIESTRFNTA 829 (963)
T ss_pred CCcccccccCHHHHHHHHHHHHHHHHHHHHhhhc-ccccCccc---cccCCcchHHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 9999999999999999999999999998654211 11122111 0112356999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhHHHHHhhcccccCCCcccHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHhCCCCCCCCCCCCe
Q 001708 850 ASTVYSWWQYQFCDVFIEAIKPYFAGDNPAFASERSAAQHVLWVCLETGLRLLHPFMPFVTEELWQRLPQPKGCATKESI 929 (1022)
Q Consensus 850 ~~~i~~f~~~~l~~~Yle~~K~~l~~~~~~~~~~r~~a~~~L~~~L~~~l~LL~PfmPfitEelwq~L~~~~~~~~~~SI 929 (1022)
++.+++|+ +.++++ . .+++++|+.+++||||||||+|||||++|+. .+||
T Consensus 830 i~~lmef~-n~l~~~------------------~-----~~~~~~l~~ll~LLaPf~PhiaEELW~~Lg~------~~sv 879 (963)
T PLN02563 830 ISAMMEFT-NAAYKW------------------D-----KVPREAIEPFVLLLSPYAPHLAEELWFRLGH------SNSL 879 (963)
T ss_pred HHHHHHHH-HHHhCc------------------h-----HHHHHHHHHHHHHHHhhhhhHHHHHHHHcCC------CCee
Confidence 99999997 444321 0 1346789999999999999999999999974 2699
Q ss_pred eeccCCCCCCCC
Q 001708 930 MLCEYPSAVEGW 941 (1022)
Q Consensus 930 ~~~~~P~~~~~~ 941 (1022)
+.++||++++.+
T Consensus 880 ~~~~WP~~d~~~ 891 (963)
T PLN02563 880 AYEPWPEANPSY 891 (963)
T ss_pred eeCCCCCCCHHH
Confidence 999999987643
No 27
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.3e-103 Score=942.84 Aligned_cols=649 Identities=28% Similarity=0.438 Sum_probs=510.2
Q ss_pred hhcCCCChhHHHHHHHHHHHcCCcccCCCCCC-CcEEEECCCCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeeeeeccC
Q 001708 143 MAKEYNPSSVEKSWYSWWENSGYFIADNKSSK-PSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGM 221 (1022)
Q Consensus 143 ~~~~y~p~~vE~~w~~~W~~~~~f~~~~~~~k-~~f~i~~pPPy~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG~ 221 (1022)
|...|+|.+||++||+.|+++++|+.+.+.++ +||++++|.|||||.|||||++||++.||++||+||+|||||+++||
T Consensus 1 ~~~~y~~~~IE~KWQ~~W~e~~~Fe~~~d~~~~~Kfyvl~mfPYpSG~LHvGH~r~Yti~Dv~aRykRm~GyNVL~PMGw 80 (814)
T COG0495 1 MMSRYNPREIEEKWQKRWEEAKVFEADEDSDKPEKFYVLVMFPYPSGALHVGHVRNYTIGDVIARYKRMQGYNVLHPMGW 80 (814)
T ss_pred CCcccchHHHHHHHHHHHHhcCCcccCCCCCCCCceEEEeCCCCCCCCcccCccccccHHHHHHHHHHhcCCeecccCcc
Confidence 35679999999999999999999999887665 59999999999999999999999999999999999999999999999
Q ss_pred CccChhHHHHHHHHHHHHhCCCccccChHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHH
Q 001708 222 DHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVR 301 (1022)
Q Consensus 222 D~~Glp~q~~vEk~l~~~~~~~~~~~g~e~f~~~~~~~~~~~~~~i~~ql~rlG~s~DW~r~~~T~d~~~~~~v~~~F~~ 301 (1022)
|++|+|++..+++ .|.+ +..|+.++++.+++||++||+|+||+|++.|+||+|++++||+|.+
T Consensus 81 dafGlPae~~A~~-----~~~~------------P~~wt~~ni~~~k~qlk~lG~siDW~Ref~T~Dp~Yyk~~QW~F~k 143 (814)
T COG0495 81 DAFGLPAENAAIK-----IGTD------------PAKWTYYNIAYMKKQLKSLGFSIDWRREFATCDPEYYKWIQWQFLK 143 (814)
T ss_pred cccCchHHHHHHH-----hCCC------------hHHHHHHHHHHHHHHHHHhCCccccccceecCCccHHHHHHHHHHH
Confidence 9999999888875 3444 4599999999999999999999999999999999999999999999
Q ss_pred HHHcCcEEEcceeeeecCCCCccccccccccc-------cCCCc----eEEeecCcccc-------cc------------
Q 001708 302 LYKEGLIYRDLRLVNWDCVLRTAISDIEVDYV-------DIPKR----EMRNVPGYEKQ-------VE------------ 351 (1022)
Q Consensus 302 L~ekGlIyr~~~~V~W~p~~~TaLsd~EVe~~-------~~~~~----t~~~vp~y~~~-------~e------------ 351 (1022)
|+++||||++..+|||||.|+|+|+|+||... .+..+ .++++..|++. ..
T Consensus 144 L~ekGL~y~~~~~VnwcP~d~tvlaneqv~~g~~~r~~~~V~~kel~qw~~kit~yae~ll~~l~~l~~~wPE~Vk~mq~ 223 (814)
T COG0495 144 LYEKGLAYRKEAPVNWCPVDGTVLANEQVIDGGCWRCGEPVEIKELTQWFFKITDYADELLDDLDKLATLWPETVKGMQR 223 (814)
T ss_pred HHHCCCEEeccccceeCCCcCCccccceeecCCcccCCCceeEeeeEEEEEEechhHHHHHhhhhhhccCCchhHHHHHH
Confidence 99999999999999999999999999999743 22221 24566666521 11
Q ss_pred ----ceeeEeEeeecCCC--cceEEEeeccccccccCcEEEEcCCccc---------------c-----------c----
Q 001708 352 ----FGVLTSFAYPLEGG--LGEIVVATTRVETMLGDTAIAIHPEDAR---------------Y-----------S---- 395 (1022)
Q Consensus 352 ----~g~l~~~~y~l~~~--~~~l~v~TTrPeTl~g~~avaV~P~d~r---------------y-----------~---- 395 (1022)
...-+.+.|.+.+. ...+.|+||||.|++|.+.+++-|+++. | +
T Consensus 224 nWIg~s~g~~v~f~~~~~~~~~~~~vfttr~dt~~gvt~~~~a~~h~lv~~~~~~~~~~~~a~fv~~~~~~~~~~~~~~~ 303 (814)
T COG0495 224 NWIGPSEGYEVAFVVDGEEEIVSIEVFTTRPDTLFGVTYVVLAPEHPLVGKLVTNPQTPLVAEFVDECKGTGVVESVPAH 303 (814)
T ss_pred cCcCCCCCeEEEEecCCcccceeeeeeeccCccccCeEEEEEeCCchHHHHHhcCccchhHHHHHHHhcCCCceeeeecc
Confidence 01123455565554 4689999999999999999999999752 1 0
Q ss_pred -----cccCCeeecCCCCCccceEeCCccccCCCCCCceecCCCCCcchHHHHHHcCCceeeeeCCC-----------Cc
Q 001708 396 -----HLHGKFAIHPFNGRKIPIICDAILVDPKFGTGAVKITPAHDPNDFDVGKRHNLEFINIFTDD-----------GK 459 (1022)
Q Consensus 396 -----~L~G~~~~~P~~~~~~pIi~~~~~V~~~~GTG~V~~~PaH~~~Dy~~~~~~~L~~i~iid~~-----------G~ 459 (1022)
-..|.+++||+.+..+||+.+++ |.+..|||+||.+||||..||+.+++++||+..+|... |.
T Consensus 304 ~~k~gv~~g~~a~~p~~~e~iPi~~a~~-vl~~ygtgavm~vpahd~rd~efA~~y~l~i~~vi~~~~~~~~~~~~~~g~ 382 (814)
T COG0495 304 AEKDGVFLGGYAINPVNGEKIPVWIANY-VLMEYGTGAVMGVPAHDERDLEFATKYKLPIKKVIMPEGTVGKKVYEGEGV 382 (814)
T ss_pred CCCcceeccccccCCCCCCcCCEEEeCc-ccccccccceecCCCCCchhhHHHHhcCCCeEEEEecCCCcccceeccCce
Confidence 13467889999999999999996 99999999999999999999999999999999888643 34
Q ss_pred cccCCCCCCCCCChhhHHHHHHHHHHHcCCccccccccccccccccCCCceecccccccceechHHHHHHHHhhhccCCC
Q 001708 460 INSNGGLEFEGMPRFKAREAVNEALKKKGLYRGAKDNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKK 539 (1022)
Q Consensus 460 ~~e~~g~~f~G~~~~~ar~~vi~~L~~~gll~~~~~~~~~~p~c~Rs~~~i~~~~~~QWFi~~~~l~~~al~~v~~~~~~ 539 (1022)
+. |.| .|.|+...+|...++.. ++-....|||+++
T Consensus 383 li-nS~-~~~gl~~e~a~~~~~~~--------------------------l~~~~~~q~~v~Y----------------- 417 (814)
T COG0495 383 LI-NSG-GLDGLDYEEAKVKIRCG--------------------------LVKRGLGQWFVNY----------------- 417 (814)
T ss_pred Ee-ccc-cccCcchhHHHHHHHHh--------------------------HHHhcCCceEEec-----------------
Confidence 33 334 57777776554444333 4455678999987
Q ss_pred ceEEeccccHHHHHHHHhhccCccceeccCCCCccCcceeccCchh------hhccCCCCcce-EEecCHHHHHHHHhhh
Q 001708 540 KLELIPRQYTAEWRRWLEAIRDWCVSRQLWWGHQIPAWYVTLEDDE------LKELGSYNDHW-IVARDEKEALAVANKK 612 (1022)
Q Consensus 540 ~i~~~P~~~~~~~~~wl~~l~DWcISRQ~~WG~pIP~~~~~~~~~~------~~~~~~~~~~w-~~~~~~~ea~~~~~~~ 612 (1022)
.++||++||||+||.|||+.+|+.|+.. ++..-+..... -.+..+.-..++....
T Consensus 418 ------------------~lrdW~~srqRywg~pipii~~e~~~~~~~~~d~Lpv~lp~~~~~~gt~~pL~~~~~W~~~s 479 (814)
T COG0495 418 ------------------RLRDWLKSRQRYWGEPIPIIHCEDCGVVPVPEDWLPVKLPERVRGLGTGSPLPWDEEWVIES 479 (814)
T ss_pred ------------------ccchHHHHHHHHhCCCcceeEcccCCcccCchHhcCcccccccccCCCCCCCCCCcceEEEe
Confidence 3689999999999999999999887631 11100000000 0000111111222234
Q ss_pred cCCCCcccccCCCcEEEEeccCccccccccC------CCCChhhhhcCCcCcccccccccchHHHHHHHHHhhhc-----
Q 001708 613 FSGKKFEMCQDPDVLDTWFSSGLFPLSVLGW------PDDTDDLKAFYPTSVLETGHDILFFWVARMVMLGIKLG----- 681 (1022)
Q Consensus 613 ~~~~~~~~~~d~DvlDtWFdSgl~p~s~lg~------p~~~~d~~~~~P~dl~~~G~Dil~fW~a~m~~~~~~l~----- 681 (1022)
||. .+..|+.||||+|++|+++++..+.. +..++.|++|||.|+|++|.|..-.+.....+...++.
T Consensus 480 ~~~--s~~~ret~Tm~~~~~sswy~~r~~d~~~~~~~~~~~e~~~yW~PVD~yigG~ehavlHLly~rF~Hkal~d~g~~ 557 (814)
T COG0495 480 LPD--STAYRETDTMDTFIDSSWYYLRFFDPIFLGELPFDREEFNYWYPVDLYIGGIEHAVLHLLYFRFFHKALFDEGLV 557 (814)
T ss_pred cCC--CceeeehhhhhHhcccccccHhhcChhcCccchhcHHHHhcccChheeecchhHHHHHHHHHHHHHHHhcccCcC
Confidence 544 57889999999999999877665532 33457899999999999999987665555555555553
Q ss_pred -CCCCceEEEeccceeCCCCccceecCCcccCcchhhccccchhHHHhhhcCCCChHHHHHHHhcccCCCCCCCCCCCch
Q 001708 682 -GEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTD 760 (1022)
Q Consensus 682 -~~~Pfk~V~~Hg~v~D~~GrKMSKSlGNvIdP~dvI~g~~l~~l~~~l~~~nl~~~e~~~a~~~~~~~~~~~i~~~GaD 760 (1022)
...||++++++|||+-.+|+|||||+||||+|+++|+ +||||
T Consensus 558 p~~epf~~L~~qGmVl~~~g~KMSKSKgN~v~p~~~i~-------------------------------------~yGAD 600 (814)
T COG0495 558 PKDEPFKKLITQGMVLGEEGEKMSKSKGNVVDPEEAVE-------------------------------------KYGAD 600 (814)
T ss_pred CCccchhhhhccceEEecCCCccccccCCCCCHHHHHH-------------------------------------HhCch
Confidence 3569999999999995589999999999999999999 99999
Q ss_pred HHHHHHHhccCCCcccccchhhhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHhh
Q 001708 761 ALRFALVSYTAQSDKINLDIQRVVGYRQWCNKLWNAVRFSMSKLGEGFVPPLKLHPHNLPFSCKWILSVLNKAISRTASS 840 (1022)
Q Consensus 761 aLR~~L~~~~~~~~Dinf~~~~~~~~r~f~nkl~N~~rf~l~~l~~~~~p~~~~~~~~~~~~D~wil~~L~~~~~~v~~a 840 (1022)
++|+|+++.++..+|.+|+.+.+++.++|++++|+++.-......... .......|+|.+|++...+ ++.
T Consensus 601 t~Rl~~m~~ap~~~d~~W~e~gv~g~~rfL~r~~~l~~~~~~~~~~~~-------~~~~~~~~~~~~h~~~~~v---~~~ 670 (814)
T COG0495 601 TVRLYIMFAAPPEQDLEWSESGVEGARRFLQRVWNLVKEHLEKLVEEL-------TKEQGKEDRWLLHRTIKKV---TED 670 (814)
T ss_pred HHHHHHHhhCChhhCCCCChhhhHHHHHHHHHHHHHHHHhhhcccccc-------cchhhHHHHHHHHHHHHHH---HHH
Confidence 999999999999999999999999999999999998876543221100 0011167888887766555 455
Q ss_pred hhc-CCHHHHHHHHHHHHHhhhhHHHHHhhcccccCCCcccHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHhCCC
Q 001708 841 LNS-YEFSDAASTVYSWWQYQFCDVFIEAIKPYFAGDNPAFASERSAAQHVLWVCLETGLRLLHPFMPFVTEELWQRLPQ 919 (1022)
Q Consensus 841 ~e~-~~f~~a~~~i~~f~~~~l~~~Yle~~K~~l~~~~~~~~~~r~~a~~~L~~~L~~~l~LL~PfmPfitEelwq~L~~ 919 (1022)
+++ +.|+.|+..+|.|. +. ...|...... . ..+|..+++.+++||+||+||+|||||+.|+.
T Consensus 671 ~e~~~~~nt~i~~~m~l~-N~-l~~~~~~~~~-----------~----~~~l~~~l~~~v~lLaP~aPH~aEElW~~lg~ 733 (814)
T COG0495 671 FEARQTFNTAIAALMELL-NA-LRKYLRRTEG-----------D----RKVLREALETWVRLLAPFAPHIAEELWEELGN 733 (814)
T ss_pred HHHHHHHHHHHHHHHHHH-HH-HHHHHhcccc-----------h----HHHHHHHHHHHHHHhcccccHHHHHHHHHhcC
Confidence 555 89999999999995 33 3455443211 1 16888999999999999999999999999985
Q ss_pred CCCCCCCCCeeeccCCCCCCCCCCH
Q 001708 920 PKGCATKESIMLCEYPSAVEGWTDE 944 (1022)
Q Consensus 920 ~~~~~~~~SI~~~~~P~~~~~~~~~ 944 (1022)
.++|..++||++++...++
T Consensus 734 ------~~~v~~~~wP~~de~~l~~ 752 (814)
T COG0495 734 ------EGFVSNAPWPEPDEEALVE 752 (814)
T ss_pred ------CCceeeCCCCCCChhhccc
Confidence 2489999999999865543
No 28
>KOG0435 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=9.4e-96 Score=829.08 Aligned_cols=648 Identities=27% Similarity=0.396 Sum_probs=515.7
Q ss_pred hHHHHHHHHHHHcCCcccCCCCCCCcEEEECCCCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeeeeeccCCccChhHHH
Q 001708 151 SVEKSWYSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQV 230 (1022)
Q Consensus 151 ~vE~~w~~~W~~~~~f~~~~~~~k~~f~i~~pPPy~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG~D~~Glp~q~ 230 (1022)
.||+.|.+.|++.-.|..+.+.++++ +|++++|||+|.|||||.+.|+|.|+++||+||+||+|+.++|||.+|||.|.
T Consensus 34 ~iEk~W~~~~~~~~~~~~~~d~sk~K-YiLsMFPYPSG~LHiGHvRVYTIsD~laRf~rm~GynVihPMGWDaFGLPAEN 112 (876)
T KOG0435|consen 34 MIEKHWKQYLKDGFPFSKDSDKSKKK-YILSMFPYPSGALHIGHVRVYTISDILARFYRMKGYNVIHPMGWDAFGLPAEN 112 (876)
T ss_pred HHHHHHHHHHhcCCccccccccCCCc-eEEEecCCCCCcccccceEEEEehHHHHHHHHhcCceeecCCcccccCCchhh
Confidence 79999999999988777666677778 77889999999999999999999999999999999999999999999999765
Q ss_pred HHHHHHHHHhCCCccccChHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHHHcCcEEE
Q 001708 231 VVEKKLMRERKLTRHDIGREQFVSEVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYR 310 (1022)
Q Consensus 231 ~vEk~l~~~~~~~~~~~g~e~f~~~~~~~~~~~~~~i~~ql~rlG~s~DW~r~~~T~d~~~~~~v~~~F~~L~ekGlIyr 310 (1022)
++ .+.|+.+. .|...+++.+++||++||+++||+|+..|++|+|+++.||+|.+||++||.||
T Consensus 113 AA-----iergv~P~------------sWT~~NI~~Mk~Ql~~lg~~FDWdrEiSTC~PdYYKWTQwiFlkLfe~GLAYq 175 (876)
T KOG0435|consen 113 AA-----IERGVHPA------------SWTINNIAKMKQQLKSLGISFDWDREISTCEPDYYKWTQWIFLKLFEKGLAYQ 175 (876)
T ss_pred HH-----HhcCCCch------------hhhHHHHHHHHHHHHHcCcccccccccccCCcchhHHHHHHHHHHHHhhhhhc
Confidence 54 45688764 89999999999999999999999999999999999999999999999999999
Q ss_pred cceeeeecCCCCccccccccccccCCCc------------eEEeecCcccccc-------------------ce--eeEe
Q 001708 311 DLRLVNWDCVLRTAISDIEVDYVDIPKR------------EMRNVPGYEKQVE-------------------FG--VLTS 357 (1022)
Q Consensus 311 ~~~~V~W~p~~~TaLsd~EVe~~~~~~~------------t~~~vp~y~~~~e-------------------~g--~l~~ 357 (1022)
...+|||||.++|+|++++|+....+-| .+++++.|+++.. .| +-..
T Consensus 176 ~Ea~VNWDPvD~TVLAnEQVD~~G~SWRSGA~VEkK~LrQWfikttaYAk~L~d~L~~L~~W~~vk~mQrnWIG~~~G~e 255 (876)
T KOG0435|consen 176 AEAEVNWDPVDKTVLANEQVDADGCSWRSGAKVEKKKLRQWFIKTTAYAKRLLDGLETLPEWPEVKDMQRNWIGRCDGAE 255 (876)
T ss_pred cccccccCcccceeecchhhcccCccccccchhhHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhHHHHHHhhcccccceE
Confidence 9999999999999999999987655544 3567777765321 12 1235
Q ss_pred EeeecCCC---cceEEEeeccccccccCcEEEEcCCccc------c------ccccC------CeeecCCCCCccceEeC
Q 001708 358 FAYPLEGG---LGEIVVATTRVETMLGDTAIAIHPEDAR------Y------SHLHG------KFAIHPFNGRKIPIICD 416 (1022)
Q Consensus 358 ~~y~l~~~---~~~l~v~TTrPeTl~g~~avaV~P~d~r------y------~~L~G------~~~~~P~~~~~~pIi~~ 416 (1022)
+.|++.++ ++.|.|+|||||||+|.+.+++.|++.. | .+|.+ -++.+|++++.+||+.+
T Consensus 256 l~F~ll~~~~~de~ltv~Tt~Petl~~~~f~vl~~~H~L~~~~~~lkefl~~~~l~~Kg~~lp~~A~Np~tg~~iPv~~a 335 (876)
T KOG0435|consen 256 LMFPLLDDGSNDEILTVYTTRPETLFGASFLVLAPSHSLLDKDSSLKEFLSKSDLPQKGVQLPCQAKNPVTGRAIPVVVA 335 (876)
T ss_pred EEEEeccCCCCCceEEEEecCchhhccceEEEEcCCchhhhhhchHHHhhhhhhccccCcccceeeccCCCCceeeEEEe
Confidence 77787544 4899999999999999999999999752 1 12333 36889999999999999
Q ss_pred CccccCCCCCCceecCCCCCcchHHHHHHcCCceee----eeCCCCccccCCCCCCCC-CChhhHHHHHHHHHHHcCCcc
Q 001708 417 AILVDPKFGTGAVKITPAHDPNDFDVGKRHNLEFIN----IFTDDGKINSNGGLEFEG-MPRFKAREAVNEALKKKGLYR 491 (1022)
Q Consensus 417 ~~~V~~~~GTG~V~~~PaH~~~Dy~~~~~~~L~~i~----iid~~G~~~e~~g~~f~G-~~~~~ar~~vi~~L~~~gll~ 491 (1022)
++ |..-.|||+|+.+|+|+..|++++++-++..+. +++++|+.++.. .|.| +.+.+|+..|++.++.+|+-.
T Consensus 336 ~~-v~~~~gt~a~m~~P~hd~rD~ela~~~~~~~~~~~~~~f~~~~K~~~~~--~~tn~~~~q~a~~~l~~~~~~~g~g~ 412 (876)
T KOG0435|consen 336 DY-VLDPYGTGAVMGAPGHDQRDKELAQKIGIKWIICIEVIFTNFGKKNEQK--AFTNLDIRQNAALKLFQFAERKGVGG 412 (876)
T ss_pred ch-hccCCCcceeeeccCcccchhHHHhcccceeEEEEeeeecchhhhhccc--cccchhHHHHHHHHHHHHHHhcCCCc
Confidence 96 999999999999999999999999997665543 346778876553 5788 566778999999998887631
Q ss_pred ccccccccccccccCCCceecccccccceechHHHHHHHHhhhccCCCceEEeccccHHHHHHHHhhccCccceeccCCC
Q 001708 492 GAKDNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKLELIPRQYTAEWRRWLEAIRDWCVSRQLWWG 571 (1022)
Q Consensus 492 ~~~~~~~~~p~c~Rs~~~i~~~~~~QWFi~~~~l~~~al~~v~~~~~~~i~~~P~~~~~~~~~wl~~l~DWcISRQ~~WG 571 (1022)
.. +. ..++||.|||||+||
T Consensus 413 ~~-----------------------------------------------vs--------------~kLkDWLiSRQRyWG 431 (876)
T KOG0435|consen 413 YV-----------------------------------------------VS--------------YKLKDWLISRQRYWG 431 (876)
T ss_pred ce-----------------------------------------------ec--------------chhhhhhhhhhhccC
Confidence 11 00 147899999999999
Q ss_pred CccCcceeccCchh------hhccCCC-CcceEEecCHHHHHHHHhhhcCCCCcccccCCCcEEEEeccCccccccccCC
Q 001708 572 HQIPAWYVTLEDDE------LKELGSY-NDHWIVARDEKEALAVANKKFSGKKFEMCQDPDVLDTWFSSGLFPLSVLGWP 644 (1022)
Q Consensus 572 ~pIP~~~~~~~~~~------~~~~~~~-~~~w~~~~~~~ea~~~~~~~~~~~~~~~~~d~DvlDtWFdSgl~p~s~lg~p 644 (1022)
+|||+.+|..|+.. ++...+. ++...-|.....+.++....||.|+...+|++|+||||+||+++||..+. |
T Consensus 432 TPIPivhc~~cG~vpVpes~LPV~LP~l~~~~~kG~Pls~~~e~vn~~cP~cg~pAkRETDTMDTFvDSsWYYlRylD-p 510 (876)
T KOG0435|consen 432 TPIPIVHCDDCGAVPVPESELPVTLPELNDFTPKGPPLSKADEWVNVDCPRCGEPAKRETDTMDTFVDSSWYYLRYLD-P 510 (876)
T ss_pred CCcceEEcCCCCcccCcHHHCCcccccccccCCCCCcccchhhheeccCccCCCcccccccccchhhccceeeEeecC-C
Confidence 99999999988741 1111111 22333455566666777778888888999999999999999999999885 4
Q ss_pred CC------ChhhhhcCCcCccccc--ccccchHHHHHHHHHhhh----cCCCCceEEEeccceeCC------CC------
Q 001708 645 DD------TDDLKAFYPTSVLETG--HDILFFWVARMVMLGIKL----GGEVPFTKVYLHPMIRDA------HG------ 700 (1022)
Q Consensus 645 ~~------~~d~~~~~P~dl~~~G--~Dil~fW~a~m~~~~~~l----~~~~Pfk~V~~Hg~v~D~------~G------ 700 (1022)
.| +.--.+|.|+|+|+.| |.+++..++|++..-+.- .+..||+.++++|||+.. .|
T Consensus 511 kN~e~~~d~a~a~k~MPVDvYIGG~EHAvlHLlYaRF~~kFl~di~~~~t~EPF~~Li~QGmV~G~tf~~~~sG~yl~~~ 590 (876)
T KOG0435|consen 511 KNPEEPFDKAKAKKNMPVDVYIGGKEHAVLHLLYARFIAKFLKDIGVVSTAEPFTKLITQGMVRGKTFRTKESGKYLGPE 590 (876)
T ss_pred CCcccccchhhhhccCceeEEeccHHHHHHHHHHHHHHHHHHhhcCCCcCCCcHHHHHhhhcccceEEecCCCCccCCHH
Confidence 43 3334679999999999 678888888887655543 346799999999999841 22
Q ss_pred -------------------------ccceecCCcccCcchhhccccchhHHHhhhcCCCChHHHHHHHhcccCCCCCCCC
Q 001708 701 -------------------------RKMSKSLGNVIDPLEVINGISLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIP 755 (1022)
Q Consensus 701 -------------------------rKMSKSlGNvIdP~dvI~g~~l~~l~~~l~~~nl~~~e~~~a~~~~~~~~~~~i~ 755 (1022)
+|||||++|+|||.++++
T Consensus 591 ev~~~nd~~~~~vlk~~~e~~v~t~eKMSKSK~NGVdP~~~v~------------------------------------- 633 (876)
T KOG0435|consen 591 EVQQVNDHQNKFVLKNDKEVVVVTYEKMSKSKHNGVDPADVVL------------------------------------- 633 (876)
T ss_pred HhhhhcCCcceeEecCCCcceeeeHHHhhhcccCCCCHHHHHH-------------------------------------
Confidence 799999999999999999
Q ss_pred CCCchHHHHHHHhccCCCcccccchhhhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCChhhHHHHHHHHHHHH
Q 001708 756 ECGTDALRFALVSYTAQSDKINLDIQRVVGYRQWCNKLWNAVRFSMSKLGEGFVPPLKLHPHNLPFSCKWILSVLNKAIS 835 (1022)
Q Consensus 756 ~~GaDaLR~~L~~~~~~~~Dinf~~~~~~~~r~f~nkl~N~~rf~l~~l~~~~~p~~~~~~~~~~~~D~wil~~L~~~~~ 835 (1022)
+||+|++|++++..++...++||+.+.+.|..+|+.++|+++.-++..-.++-.+......+.....++-+.+.+|.+++
T Consensus 634 ~yG~D~tRl~ilf~ap~~~~~nW~es~i~Gi~rwl~riw~l~~~~~~ar~~g~~~d~~~~td~~dae~~kl~~~~n~fi~ 713 (876)
T KOG0435|consen 634 EYGVDTTRLYILFAAPPRDPINWNESAIPGIKRWLQRIWALVSQILQARDDGKAKDLKKLTDGFDAETRKLKETYNFFIK 713 (876)
T ss_pred HhCchHHHHHHHhhCCcccccccccccchhHHHHHHHHHHHHHHHHHHHhcCCcccccccccccchhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999876665422211111111111234556789999999999
Q ss_pred HHHhhhhc-CCHHHHHHHHHHHHHhhhhHHHHHhhcccccCCCcccHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHH
Q 001708 836 RTASSLNS-YEFSDAASTVYSWWQYQFCDVFIEAIKPYFAGDNPAFASERSAAQHVLWVCLETGLRLLHPFMPFVTEELW 914 (1022)
Q Consensus 836 ~v~~a~e~-~~f~~a~~~i~~f~~~~l~~~Yle~~K~~l~~~~~~~~~~r~~a~~~L~~~L~~~l~LL~PfmPfitEelw 914 (1022)
.|+++|+. +.++.|+..++.|. +.|...+ |..+-. ++ ....+|+.++.||+|+.||+|+|+|
T Consensus 714 ~vt~~~e~~~slNtaIS~~m~lt-N~l~~a~----k~~~~h-~~-----------~~~~al~~lv~mlaP~aPh~asE~W 776 (876)
T KOG0435|consen 714 QVTEHYEVLFSLNTAISDMMGLT-NALKKAL----KIVLVH-SP-----------EFERALEALVIMLAPFAPHVASELW 776 (876)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHH-HHHHHhh----hhhhhc-Ch-----------HHHHHHHHHHHHHhccCchhHHHHH
Confidence 99999986 77999999999985 5554443 222211 12 2234577888999999999999999
Q ss_pred HhCCCCCCCCCCCCeeeccCCCCCCC
Q 001708 915 QRLPQPKGCATKESIMLCEYPSAVEG 940 (1022)
Q Consensus 915 q~L~~~~~~~~~~SI~~~~~P~~~~~ 940 (1022)
..|+..- .-.+++ .||.++..
T Consensus 777 s~l~~~~--~~~~~~---~WP~vd~~ 797 (876)
T KOG0435|consen 777 SALANDL--SWVSDV---KWPEVDPD 797 (876)
T ss_pred HHHhccc--cchhcc---CCccCChh
Confidence 9998521 111222 59987754
No 29
>PRK12268 methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.5e-88 Score=818.53 Aligned_cols=505 Identities=20% Similarity=0.292 Sum_probs=411.8
Q ss_pred CcEEEECCCCCCCCCCCcchhHHH-HHHHHHHHHHHhCCCeeeeeccCCccChhHHHHHHHHHHHHhCCCccccChHHHH
Q 001708 175 PSFVIVLPPPNVTGALHIGHALTT-AIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFV 253 (1022)
Q Consensus 175 ~~f~i~~pPPy~nG~LHiGHal~~-~i~Dii~Ry~rm~G~~Vl~~pG~D~~Glp~q~~vEk~l~~~~~~~~~~~g~e~f~ 253 (1022)
++|+|++|||||||.||||||+++ +++|+++||+||+|++|+|++|+||||+||+.++++ .|+++
T Consensus 3 ~~~~i~~~~py~ng~~HiGH~~~~~~~~D~~~R~~r~~G~~v~~~~g~d~~g~~i~~~a~~-----~g~~~--------- 68 (556)
T PRK12268 3 MRILITSAWPYANGPLHLGHLAGSGLPADVFARYQRLKGNEVLFVSGSDEHGTPIELAAKK-----EGVTP--------- 68 (556)
T ss_pred CcEEEecCCCCCCCCccccccccchhHHHHHHHHHHhcCCceEecCcCCCcccHHHHHHHH-----cCCCH---------
Confidence 479999999999999999999997 999999999999999999999999999999998875 46664
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHHHcCcEEEcceeeeecCCCCccccccccccc
Q 001708 254 SEVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDLRLVNWDCVLRTAISDIEVDYV 333 (1022)
Q Consensus 254 ~~~~~~~~~~~~~i~~ql~rlG~s~DW~r~~~T~d~~~~~~v~~~F~~L~ekGlIyr~~~~V~W~p~~~TaLsd~EVe~~ 333 (1022)
++|++++.+.+.++|++||+++| .+++|+||.|.+.++++|.+|+++|+||++.++|+|||.|+|+|++.+|.
T Consensus 69 ---~~~~~~~~~~~~~~~~~l~i~~d--~~~~t~~~~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~~~~l~~~~v~-- 141 (556)
T PRK12268 69 ---QELADKYHEEHKEDFKKLGISYD--LFTRTTSPNHHEVVQEFFLKLYENGYIYKKTIEQAYCPSDGRFLPDRYVE-- 141 (556)
T ss_pred ---HHHHHHHHHHHHHHHHHcCCcCC--CCcCCCCHHHHHHHHHHHHHHHHCCCeEEeeeEEEecCCCCcCcCcccee--
Confidence 57899999999999999999776 68899999999999999999999999999999999999999999985442
Q ss_pred cCCCceEEeecCccccccceeeEeEeeecCCCcceEEEeeccccccccCcEEEEcCCccccccccCCeeecCCCCCccce
Q 001708 334 DIPKREMRNVPGYEKQVEFGVLTSFAYPLEGGLGEIVVATTRVETMLGDTAIAIHPEDARYSHLHGKFAIHPFNGRKIPI 413 (1022)
Q Consensus 334 ~~~~~t~~~vp~y~~~~e~g~l~~~~y~l~~~~~~l~v~TTrPeTl~g~~avaV~P~d~ry~~L~G~~~~~P~~~~~~pI 413 (1022)
| .||.|+.
T Consensus 142 -----------------------------------------------------------------g---~cp~c~~---- 149 (556)
T PRK12268 142 -----------------------------------------------------------------G---TCPYCGY---- 149 (556)
T ss_pred -----------------------------------------------------------------c---cCCCCCC----
Confidence 1 1333221
Q ss_pred EeCCccccCCCCCCceecCCCCCcchHHHHHHcCCceeeeeCCCCccccCCCCCCCCCChhhHHHHHHHHHHHcCCcccc
Q 001708 414 ICDAILVDPKFGTGAVKITPAHDPNDFDVGKRHNLEFINIFTDDGKINSNGGLEFEGMPRFKAREAVNEALKKKGLYRGA 493 (1022)
Q Consensus 414 i~~~~~V~~~~GTG~V~~~PaH~~~Dy~~~~~~~L~~i~iid~~G~~~e~~g~~f~G~~~~~ar~~vi~~L~~~gll~~~ 493 (1022)
.+.+|..||.||..+
T Consensus 150 ----------------------------------------~~~~G~~ce~cg~~~------------------------- 164 (556)
T PRK12268 150 ----------------------------------------EGARGDQCDNCGALL------------------------- 164 (556)
T ss_pred ----------------------------------------cccCCchhhhccccC-------------------------
Confidence 123788899998321
Q ss_pred ccccccccccccCCCceecccccccceechHHHHHHHHhhhccCCCceEEeccccHHHHHHHHh-hccCccceeccCCCC
Q 001708 494 KDNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKLELIPRQYTAEWRRWLE-AIRDWCVSRQLWWGH 572 (1022)
Q Consensus 494 ~~~~~~~p~c~Rs~~~i~~~~~~QWFi~~~~l~~~al~~v~~~~~~~i~~~P~~~~~~~~~wl~-~l~DWcISRQ~~WG~ 572 (1022)
+...+..|+|+|||+++|++.++||||+++++++++++++ + ++.++|+..++++.+||+ +++||||||||+|||
T Consensus 165 ~~~~l~~p~~~~~~~~~e~~~~~qwF~~l~~~~~~l~~~~---~--~~~~~p~~~~~~~~~~l~~~l~Dw~ISR~~~WGi 239 (556)
T PRK12268 165 DPTDLINPRSKISGSTPEFRETEHFFLDLPAFAERLRAWI---E--SSGDWPPNVLNFTLNWLKEGLKPRAITRDLDWGI 239 (556)
T ss_pred ChHHhcCCccccCCCcCeEEecceEEEEhHHHHHHHHHHH---h--hccCCCHHHHHHHHHHHhCCCCCcCceeeCCCCe
Confidence 1223345999999999999999999999999999999998 3 678999999999999999 899999999999999
Q ss_pred ccCcceeccCchhhhccCCCCcceEEecCHHHHHHHHhhhcCCCCcccccCCCcEEEEeccCcccccccc-CCC---CCh
Q 001708 573 QIPAWYVTLEDDELKELGSYNDHWIVARDEKEALAVANKKFSGKKFEMCQDPDVLDTWFSSGLFPLSVLG-WPD---DTD 648 (1022)
Q Consensus 573 pIP~~~~~~~~~~~~~~~~~~~~w~~~~~~~ea~~~~~~~~~~~~~~~~~d~DvlDtWFdSgl~p~s~lg-~p~---~~~ 648 (1022)
||| |++. +..++|||||+.+.+++.++ |.. +..
T Consensus 240 piP-~~~~------------------------------------------~~~~iyvW~da~~~y~~~~~~~~~~~g~~~ 276 (556)
T PRK12268 240 PVP-WPGF------------------------------------------EGKVFYVWFDAVIGYISASKEWAERTGDPE 276 (556)
T ss_pred eCC-CCCC------------------------------------------CCcEEEEeehHhhHHHHHHHHHHHhcCCch
Confidence 999 6431 12689999998877776543 222 235
Q ss_pred hhhhcC----CcCcccccccccchHHHHHHHHHhhhc--CCCCceEEEeccceeCCCCccceecCCcccCcchhhccccc
Q 001708 649 DLKAFY----PTSVLETGHDILFFWVARMVMLGIKLG--GEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISL 722 (1022)
Q Consensus 649 d~~~~~----P~dl~~~G~Dil~fW~a~m~~~~~~l~--~~~Pfk~V~~Hg~v~D~~GrKMSKSlGNvIdP~dvI~g~~l 722 (1022)
+|..|| |.+++++|+||++||...+.++-+... ...| +++++||||++ +|+|||||+||||+|.|+|+
T Consensus 277 ~~~~~w~ds~~~~~~~~G~D~~~Fh~~~~p~~l~~~~~~~~~P-~~v~~~G~v~~-~G~KMSKS~GN~I~p~dli~---- 350 (556)
T PRK12268 277 AWKEFWLDPETKSYYFIGKDNIPFHSIIWPAMLLGSGEPLKLP-DEIVSSEYLTL-EGGKFSKSRGWGIWVDDALE---- 350 (556)
T ss_pred HHHHHhCCCCCeEEEEEeeccCcchHHHHHHHHHhcCCCCCCC-CEeeccCCEEE-CCeeeccCCCcccCHHHHHH----
Confidence 687788 778999999999987654333222222 4556 79999999985 89999999999999999999
Q ss_pred hhHHHhhhcCCCChHHHHHHHhcccCCCCCCCCCCCchHHHHHHHhccCCCcccccchhhhHH--HHHHHHHHHHHHHHH
Q 001708 723 EGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLDIQRVVG--YRQWCNKLWNAVRFS 800 (1022)
Q Consensus 723 ~~l~~~l~~~nl~~~e~~~a~~~~~~~~~~~i~~~GaDaLR~~L~~~~~~~~Dinf~~~~~~~--~r~f~nkl~N~~rf~ 800 (1022)
+||+|+|||||++.++.++|++|+.+.+.. .+++++++||.+.++
T Consensus 351 ---------------------------------~yGaDalR~~ll~~~~~~~d~~f~~~~~~~~~~~~~~~~l~n~~~r~ 397 (556)
T PRK12268 351 ---------------------------------RYPPDYLRYYLAANAPENSDTDFTWEEFVRRVNSELADKYGNLVNRV 397 (556)
T ss_pred ---------------------------------HcCcHHHHHHHHhcCCCCCCCCCCHHHHHHHHhHHhhhhHHHHHHHH
Confidence 899999999999988889999999998754 456889999987655
Q ss_pred HhhcCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHhhhhHHHHHhhcccccCCCccc
Q 001708 801 MSKLGEGFVPPLKLHPHNLPFSCKWILSVLNKAISRTASSLNSYEFSDAASTVYSWWQYQFCDVFIEAIKPYFAGDNPAF 880 (1022)
Q Consensus 801 l~~l~~~~~p~~~~~~~~~~~~D~wil~~L~~~~~~v~~a~e~~~f~~a~~~i~~f~~~~l~~~Yle~~K~~l~~~~~~~ 880 (1022)
...+...+... ......+..|+||+++|+.+++.+.++|++|+|+.|++.+++|+ ++||+|++..|||...++..
T Consensus 398 ~~~~~~~~~~~--~~~~~~~~~d~~ll~~l~~~~~~v~~~~~~~~~~~a~~~l~~~~--~~~n~yi~~~kpw~~~~~~~- 472 (556)
T PRK12268 398 LSFIEKYFGGI--VPPGELGDEDRELIAEAEALFKEVGELLEAGEFKKALEEIMELA--REANKYLDEKAPWKLAKTDR- 472 (556)
T ss_pred HHHHHHhcCCc--CCCCcCCcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH--HHHHHHHHcCCChhhhcCCH-
Confidence 44332111110 01123567899999999999999999999999999999999996 69999999999985433211
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHhCCCCCCCCCCCCeeeccCCCC
Q 001708 881 ASERSAAQHVLWVCLETGLRLLHPFMPFVTEELWQRLPQPKGCATKESIMLCEYPSA 937 (1022)
Q Consensus 881 ~~~r~~a~~~L~~~L~~~l~LL~PfmPfitEelwq~L~~~~~~~~~~SI~~~~~P~~ 937 (1022)
...+.+..++..+|+.+++||||||||+|||||++|+. +++...+||..
T Consensus 473 -~~~~~~l~~~~~~l~~~~~lL~P~~P~~aeei~~~Lg~-------~~~~~~~w~~~ 521 (556)
T PRK12268 473 -ERAATVLYTALNLVRLLAVLLYPFLPFSAQKIWEMLGG-------ENIEKLTWESL 521 (556)
T ss_pred -HHHHHHHHHHHHHHHHHHHHhhCccchHHHHHHHHhCC-------CCCcccchhhh
Confidence 02334445555688889999999999999999999974 23445567653
No 30
>cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases. Valine amino-acyl tRNA synthetase (ValRS) catalytic core domain. This enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=100.00 E-value=2.4e-88 Score=779.11 Aligned_cols=380 Identities=63% Similarity=1.117 Sum_probs=346.1
Q ss_pred CcEEEECCCCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeeeeeccCCccChhHHHHHHHHHHHHhCCCccccChHHHHH
Q 001708 175 PSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVS 254 (1022)
Q Consensus 175 ~~f~i~~pPPy~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG~D~~Glp~q~~vEk~l~~~~~~~~~~~g~e~f~~ 254 (1022)
|+|+|++|||||||.|||||+++++++|+++||+||+|++|+|++||||||+|||.++|+++.. .+++++++++++|++
T Consensus 1 ~~f~i~~~pPy~nG~lHiGH~~~~~~~Dv~~Ry~r~~G~~V~~~~G~D~hG~pie~~a~k~~~~-~~~~~~~~~~~~~~~ 79 (382)
T cd00817 1 PVFVIDTPPPNVTGSLHMGHALNNTIQDIIARYKRMKGYNVLWPPGTDHAGIATQVVVEKKLGI-EGKTRHDLGREEFLE 79 (382)
T ss_pred CcEEEecCCCCCCCcchHHHHHHHHHHHHHHHHHHhcCCcccccCccCCCCChHHHHHHHHhcc-cccchhcCCHHHHHH
Confidence 5799999999999999999999999999999999999999999999999999999999998743 344667899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHHHcCcEEEcceeeeecCCCCcccccccccccc
Q 001708 255 EVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDLRLVNWDCVLRTAISDIEVDYVD 334 (1022)
Q Consensus 255 ~~~~~~~~~~~~i~~ql~rlG~s~DW~r~~~T~d~~~~~~v~~~F~~L~ekGlIyr~~~~V~W~p~~~TaLsd~EVe~~~ 334 (1022)
.|++|++++++.++++|++||+++||++++.|+||.|.+.|+++|.+|+++|+||++.++|+|||.|+|+|||.|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~yc~~~~t~l~~~e----- 154 (382)
T cd00817 80 KCWEWKEESGGKIREQLKRLGASVDWSREYFTMDPGLSRAVQEAFVRLYEKGLIYRDNRLVNWCPKLRTAISDIE----- 154 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHhCceeecCCCcCCCCHHHHHHHHHHHHHHHHCCCEEeeeeEEeecCCcCCCCCcch-----
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998721
Q ss_pred CCCceEEeecCccccccceeeEeEeeecCCCcceEEEeeccccccccCcEEEEcCCccccccccCCeeecCCCCCccceE
Q 001708 335 IPKREMRNVPGYEKQVEFGVLTSFAYPLEGGLGEIVVATTRVETMLGDTAIAIHPEDARYSHLHGKFAIHPFNGRKIPII 414 (1022)
Q Consensus 335 ~~~~t~~~vp~y~~~~e~g~l~~~~y~l~~~~~~l~v~TTrPeTl~g~~avaV~P~d~ry~~L~G~~~~~P~~~~~~pIi 414 (1022)
T Consensus 155 -------------------------------------------------------------------------------- 154 (382)
T cd00817 155 -------------------------------------------------------------------------------- 154 (382)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eCCccccCCCCCCceecCCCCCcchHHHHHHcCCceeeeeCCCCccccCCCCCCCCCChhhHHHHHHHHHHHcCCccccc
Q 001708 415 CDAILVDPKFGTGAVKITPAHDPNDFDVGKRHNLEFINIFTDDGKINSNGGLEFEGMPRFKAREAVNEALKKKGLYRGAK 494 (1022)
Q Consensus 415 ~~~~~V~~~~GTG~V~~~PaH~~~Dy~~~~~~~L~~i~iid~~G~~~e~~g~~f~G~~~~~ar~~vi~~L~~~gll~~~~ 494 (1022)
|
T Consensus 155 -----v-------------------------------------------------------------------------- 155 (382)
T cd00817 155 -----V-------------------------------------------------------------------------- 155 (382)
T ss_pred -----h--------------------------------------------------------------------------
Confidence 1
Q ss_pred cccccccccccCCCceecccccccceechHHHHHHHHhhhccCCCceEEeccccHHHHHHHHhhccCccceeccCCCCcc
Q 001708 495 DNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKLELIPRQYTAEWRRWLEAIRDWCVSRQLWWGHQI 574 (1022)
Q Consensus 495 ~~~~~~p~c~Rs~~~i~~~~~~QWFi~~~~l~~~al~~v~~~~~~~i~~~P~~~~~~~~~wl~~l~DWcISRQ~~WG~pI 574 (1022)
|+|||++++++.++|||++++++++++++.+ +++.++|+|++.++++.+||++++|||||||++||+||
T Consensus 156 --------c~~cg~~~~~~~~~qwf~~l~~~~~~l~~~~---~~~~~~~~P~~~~~~~~~~l~~l~Dw~ISR~~~WGipv 224 (382)
T cd00817 156 --------CSRSGDVIEPLLKPQWFVKVKDLAKKALEAV---KEGDIKFVPERMEKRYENWLENIRDWCISRQLWWGHRI 224 (382)
T ss_pred --------cccCCCeEEEEecCeeEEehHHHHHHHHHHH---hcCCcEEEChHHHHHHHHHHhhCccceeeeccccCCcc
Confidence 8899999999999999999999999999999 76669999999999999999999999999999999999
Q ss_pred CcceeccCchhhhccCCCCcceEEecCHHHHHHHH--hhhcCCCCcccccCCCcEEEEeccCccccccccCCCCChhhhh
Q 001708 575 PAWYVTLEDDELKELGSYNDHWIVARDEKEALAVA--NKKFSGKKFEMCQDPDVLDTWFSSGLFPLSVLGWPDDTDDLKA 652 (1022)
Q Consensus 575 P~~~~~~~~~~~~~~~~~~~~w~~~~~~~ea~~~~--~~~~~~~~~~~~~d~DvlDtWFdSgl~p~s~lg~p~~~~d~~~ 652 (1022)
|+|+|.+++ ..+++...++....+ ...++.....+++++||||||||||++|+++++||.++.+|++
T Consensus 225 P~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~dvWfds~~~~~~~~~~~~~~~~~~~ 293 (382)
T cd00817 225 PAWYCKDGG-----------HWVVAREEDEAIDKAAPEACVPCGGEELKQDEDVLDTWFSSSLWPFSTLGWPEETKDLKK 293 (382)
T ss_pred ceEEeCCCC-----------cEEecchhHHHHHHhccccccCCCccCeeECCceeeeeecCCCcHHHHhCCCCcchhHhh
Confidence 999997653 233333333332222 1123333456899999999999999999999999988778999
Q ss_pred cCCcCcccccccccchHHHHHHHHHhhhcCCCCceEEEeccceeCCCCccceecCCcccCcchhhccccchhHHHhhhcC
Q 001708 653 FYPTSVLETGHDILFFWVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLEGLHKRLEEG 732 (1022)
Q Consensus 653 ~~P~dl~~~G~Dil~fW~a~m~~~~~~l~~~~Pfk~V~~Hg~v~D~~GrKMSKSlGNvIdP~dvI~g~~l~~l~~~l~~~ 732 (1022)
+||+|++++|+||+|||+.++++++..+.|..||++|++||+|+|.+|+|||||+||+|+|.|+++
T Consensus 294 ~~p~d~~~~G~D~~~~h~~~~l~~~~~~~g~~p~~~v~~hg~v~~~~g~KMSKS~Gn~v~~~dll~-------------- 359 (382)
T cd00817 294 FYPTSLLVTGHDIIFFWVARMIMRGLKLTGKLPFKEVYLHGLVRDEDGRKMSKSLGNVIDPLDVID-------------- 359 (382)
T ss_pred cCCCCeeeeecCcCchHHHHHHHHHHHhhCCCchHHeEeeeeEECCCCCCccccCCCCCCHHHHHH--------------
Confidence 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHhcccCCCCCCCCCCCchHHHHHHHhccCCCccccc
Q 001708 733 NLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINL 778 (1022)
Q Consensus 733 nl~~~e~~~a~~~~~~~~~~~i~~~GaDaLR~~L~~~~~~~~Dinf 778 (1022)
+||+|++|||+++.++.++|.+|
T Consensus 360 -----------------------~~g~Da~R~~ll~~~~~~~D~~f 382 (382)
T cd00817 360 -----------------------GYGADALRFTLASAATQGRDINL 382 (382)
T ss_pred -----------------------hcCcHHHHHHHHhCCCccCCCCC
Confidence 89999999999999989999876
No 31
>TIGR00398 metG methionyl-tRNA synthetase. The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to this model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (sma
Probab=100.00 E-value=5.7e-87 Score=800.56 Aligned_cols=490 Identities=24% Similarity=0.336 Sum_probs=417.9
Q ss_pred EEEECCCCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeeeeeccCCccChhHHHHHHHHHHHHhCCCccccChHHHHHHH
Q 001708 177 FVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEV 256 (1022)
Q Consensus 177 f~i~~pPPy~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG~D~~Glp~q~~vEk~l~~~~~~~~~~~g~e~f~~~~ 256 (1022)
|+|++|||||||.|||||+++++++|+++||+||+|++|+|++|+|+||+||+..+++ +|+++
T Consensus 1 ~~it~~~P~~ng~lHiGH~~~~~~aDvl~R~~r~~G~~V~~v~g~D~~g~~i~~~a~~-----~g~~~------------ 63 (530)
T TIGR00398 1 ILITTALPYANGKPHLGHAYTTILADVYARYKRLRGYEVLFVCGTDEHGTKIELKAEQ-----EGLTP------------ 63 (530)
T ss_pred CEEecCCCCCCCCcccchhHHHHHHHHHHHHHHhcCCeEEEecccCCCCcHHHHHHHH-----cCCCH------------
Confidence 6899999999999999999999999999999999999999999999999999888865 46654
Q ss_pred HHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHHHcCcEEEcceeeeecCCCCccccccccccccCC
Q 001708 257 WKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDLRLVNWDCVLRTAISDIEVDYVDIP 336 (1022)
Q Consensus 257 ~~~~~~~~~~i~~ql~rlG~s~DW~r~~~T~d~~~~~~v~~~F~~L~ekGlIyr~~~~V~W~p~~~TaLsd~EVe~~~~~ 336 (1022)
+++++++.+.+++++++||+++| ....|+++.|...|+++|.+|+++|+||++.++|+|||.|+|+|+|.+|+.
T Consensus 64 ~e~~~~~~~~~~~~l~~LgI~~D--~~~~t~~~~~~~~v~~~~~~L~~kG~iY~~~~~v~~~~~~~~~l~~~~v~g---- 137 (530)
T TIGR00398 64 KELVDKYHEEFKDDWKWLNISFD--RFIRTTDEEHKEIVQKIFQKLKENGYIYEKEIKQLYCPECEMFLPDRYVEG---- 137 (530)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCC--CCccCCCHHHHHHHHHHHHHHHHCCCEEEeeeEEEecCCCCcCCchhhhcC----
Confidence 47789999999999999999988 467799999999999999999999999999999999999999999965531
Q ss_pred CceEEeecCccccccceeeEeEeeecCCCcceEEEeeccccccccCcEEEEcCCccccccccCCeeecCCCCCccceEeC
Q 001708 337 KREMRNVPGYEKQVEFGVLTSFAYPLEGGLGEIVVATTRVETMLGDTAIAIHPEDARYSHLHGKFAIHPFNGRKIPIICD 416 (1022)
Q Consensus 337 ~~t~~~vp~y~~~~e~g~l~~~~y~l~~~~~~l~v~TTrPeTl~g~~avaV~P~d~ry~~L~G~~~~~P~~~~~~pIi~~ 416 (1022)
.||.|+
T Consensus 138 ------------------------------------------------------------------~cp~c~-------- 143 (530)
T TIGR00398 138 ------------------------------------------------------------------TCPKCG-------- 143 (530)
T ss_pred ------------------------------------------------------------------CCCCCC--------
Confidence 134332
Q ss_pred CccccCCCCCCceecCCCCCcchHHHHHHcCCceeeeeCCCCccccCCCCCCCCCChhhHHHHHHHHHHHcCCccccccc
Q 001708 417 AILVDPKFGTGAVKITPAHDPNDFDVGKRHNLEFINIFTDDGKINSNGGLEFEGMPRFKAREAVNEALKKKGLYRGAKDN 496 (1022)
Q Consensus 417 ~~~V~~~~GTG~V~~~PaH~~~Dy~~~~~~~L~~i~iid~~G~~~e~~g~~f~G~~~~~ar~~vi~~L~~~gll~~~~~~ 496 (1022)
.. |.+|.+|++||. ..++.
T Consensus 144 --------------------~~----------------~~~g~~ce~cg~-------------------------~~~~~ 162 (530)
T TIGR00398 144 --------------------SE----------------DARGDHCEVCGR-------------------------HLEPT 162 (530)
T ss_pred --------------------Cc----------------ccccchhhhccc-------------------------cCCHH
Confidence 22 236888999981 22556
Q ss_pred cccccccccCCCceecccccccceechHHHHHHHHhhhccCC-CceEEeccccHHHHHHHHhh-ccCccceeccC-CCCc
Q 001708 497 EMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDK-KKLELIPRQYTAEWRRWLEA-IRDWCVSRQLW-WGHQ 573 (1022)
Q Consensus 497 ~~~~p~c~Rs~~~i~~~~~~QWFi~~~~l~~~al~~v~~~~~-~~i~~~P~~~~~~~~~wl~~-l~DWcISRQ~~-WG~p 573 (1022)
.+.+|+|+|||+++|++.++|||++++++++.+++++ ++ .+..+.|+..++.+.+||++ ++|||||||++ ||+|
T Consensus 163 ~l~~p~~~~~~~~~e~~~~~~~f~~l~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~l~~~l~d~~iSR~~~~WGip 239 (530)
T TIGR00398 163 ELINPRCKICGAKPELRDSEHYFFRLSAFEKELEEWI---RKNPESGSPASNVKNKAQNWLKGGLKDLAITRDLVYWGIP 239 (530)
T ss_pred HhcCCccccCCCcceEEecceEEEEhHHHHHHHHHHH---HhCCccCCCcHHHHHHHHHHHhCCCCCccccCcCCCCCee
Confidence 6789999999999999999999999999999999998 43 23556788889999999997 99999999999 9999
Q ss_pred cCcceeccCchhhhccCCCCcceEEecCHHHHHHHHhhhcCCCCcccccCCCcEEEEeccCccccccccCCC-CChhhhh
Q 001708 574 IPAWYVTLEDDELKELGSYNDHWIVARDEKEALAVANKKFSGKKFEMCQDPDVLDTWFSSGLFPLSVLGWPD-DTDDLKA 652 (1022)
Q Consensus 574 IP~~~~~~~~~~~~~~~~~~~~w~~~~~~~ea~~~~~~~~~~~~~~~~~d~DvlDtWFdSgl~p~s~lg~p~-~~~d~~~ 652 (1022)
||.| +.+|+|||||+++.|++.++++. ++.+|+.
T Consensus 240 vP~~---------------------------------------------~~~~~yvW~da~~~y~~~~~~~~~~~~~~~~ 274 (530)
T TIGR00398 240 VPND---------------------------------------------PNKVVYVWFDALIGYISSLGILSGDTEDWKK 274 (530)
T ss_pred CCCC---------------------------------------------CCcEEEEeecchHHhHhhhccccCChhhHHH
Confidence 9964 12689999999999999888875 3567999
Q ss_pred cCCcC-----cccccccccchHHHHH--HHHHhhhcCCCCceEEEeccceeCCCCccceecCCcccCcchhhccccchhH
Q 001708 653 FYPTS-----VLETGHDILFFWVARM--VMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLEGL 725 (1022)
Q Consensus 653 ~~P~d-----l~~~G~Dil~fW~a~m--~~~~~~l~~~~Pfk~V~~Hg~v~D~~GrKMSKSlGNvIdP~dvI~g~~l~~l 725 (1022)
|||.+ ++++|+||++||.... +++++ |..||++|++||||++. |+|||||+||+|+|.|+|+
T Consensus 275 ~w~~~~~~~~v~~~G~Di~~~h~~~~~a~l~~~---~~~~~~~~~~~g~v~~~-g~KmSKS~Gn~i~~~d~i~------- 343 (530)
T TIGR00398 275 WWNNDEDAELIHFIGKDIVRFHTIYWPAMLMGL---GLPLPTQVFSHGYLTVE-GGKMSKSLGNVVDPSDLLA------- 343 (530)
T ss_pred hCCCCCCceEEEEEecccchhHHHHHHHHHHhC---CCCCCCEEEeeccEEEC-CceecccCCceecHHHHHH-------
Confidence 99999 9999999999743321 22332 34578999999999976 9999999999999999999
Q ss_pred HHhhhcCCCChHHHHHHHhcccCCCCCCCCCCCchHHHHHHHhccCCCcccccchhhhHHH--HHHHHHHHHHHHHHHhh
Q 001708 726 HKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLDIQRVVGY--RQWCNKLWNAVRFSMSK 803 (1022)
Q Consensus 726 ~~~l~~~nl~~~e~~~a~~~~~~~~~~~i~~~GaDaLR~~L~~~~~~~~Dinf~~~~~~~~--r~f~nkl~N~~rf~l~~ 803 (1022)
+||+|++||||++.++.++|++|+.+.+... .++++++||++.++++.
T Consensus 344 ------------------------------~~g~D~lR~~l~~~~~~~~d~~f~~~~l~~~~n~~l~~~l~n~~~r~~~~ 393 (530)
T TIGR00398 344 ------------------------------RFGADILRYYLLKERPLGKDGDFSWEDFVERVNADLANKLGNLLNRTLGF 393 (530)
T ss_pred ------------------------------HcCchHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999998888889999999998765 57899999999876654
Q ss_pred cCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHhhhhHHHHHhhcccccCCCcccHHH
Q 001708 804 LGEGFVPPLKLHPHNLPFSCKWILSVLNKAISRTASSLNSYEFSDAASTVYSWWQYQFCDVFIEAIKPYFAGDNPAFASE 883 (1022)
Q Consensus 804 l~~~~~p~~~~~~~~~~~~D~wil~~L~~~~~~v~~a~e~~~f~~a~~~i~~f~~~~l~~~Yle~~K~~l~~~~~~~~~~ 883 (1022)
+...+.... .........|+|++++++++++.+.++|++|+|+.|++.+++|+ ++||.|++.+|||....+.. .
T Consensus 394 ~~~~~~~~~-~~~~~~~~~d~~ll~~l~~~~~~v~~a~e~~~~~~a~~~l~~l~--~~~n~Yi~~~kpw~~~~~~~---~ 467 (530)
T TIGR00398 394 IKKYFNGVL-PSEDITDEEDKKLLKLINEALEQIDEAIESFEFRKALREIMKLA--DRGNKYIDENKPWELFKQSP---R 467 (530)
T ss_pred HHHhcCCcC-CCCcccchhhHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH--HHHHHHHhcCCChhhcCChH---H
Confidence 432121100 00112356899999999999999999999999999999999996 79999999999997654332 4
Q ss_pred HHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHhCCC
Q 001708 884 RSAAQHVLWVCLETGLRLLHPFMPFVTEELWQRLPQ 919 (1022)
Q Consensus 884 r~~a~~~L~~~L~~~l~LL~PfmPfitEelwq~L~~ 919 (1022)
+++++.+++.+++.+++||+|||||+||+||++|+.
T Consensus 468 ~~~~~~~l~~~l~~l~~ll~P~~P~~ae~i~~~L~~ 503 (530)
T TIGR00398 468 LKELLAVCSMLIRVLSILLYPIMPKLSEKILKFLNF 503 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHhCcccHHHHHHHHHhCC
Confidence 678899999999999999999999999999999985
No 32
>PRK00133 metG methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=3.8e-83 Score=783.48 Aligned_cols=484 Identities=20% Similarity=0.284 Sum_probs=409.5
Q ss_pred CcEEEECCCCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeeeeeccCCccChhHHHHHHHHHHHHhCCCccccChHHHHH
Q 001708 175 PSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVS 254 (1022)
Q Consensus 175 ~~f~i~~pPPy~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG~D~~Glp~q~~vEk~l~~~~~~~~~~~g~e~f~~ 254 (1022)
.+|+|++|||||||.|||||+++++++|+++||+||+|++|+|++|||+||+||+..+++ .|+++.
T Consensus 2 ~~~~itt~~py~ng~~HiGH~~~~l~aDv~aR~~r~~G~~V~~~~g~D~hG~~i~~~A~~-----~g~~p~--------- 67 (673)
T PRK00133 2 RKILVTCALPYANGPIHLGHLVEYIQADIWVRYQRMRGHEVLFVCADDAHGTPIMLKAEK-----EGITPE--------- 67 (673)
T ss_pred CCEEEeCCCCCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEeCccCCCChHHHHHHHH-----cCCCHH---------
Confidence 369999999999999999999999999999999999999999999999999999998875 477653
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHHHcCcEEEcceeeeecCCCCcccccccccccc
Q 001708 255 EVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDLRLVNWDCVLRTAISDIEVDYVD 334 (1022)
Q Consensus 255 ~~~~~~~~~~~~i~~ql~rlG~s~DW~r~~~T~d~~~~~~v~~~F~~L~ekGlIyr~~~~V~W~p~~~TaLsd~EVe~~~ 334 (1022)
+|+++|++.++++|++||+++| .++.|+++.|.+.|+++|.+|+++|+||++..+|+|||.|+++|+|.+|+
T Consensus 68 ---e~~~~~~~~~~~~~~~l~i~~d--~f~rtt~~~h~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~~~~v~--- 139 (673)
T PRK00133 68 ---ELIARYHAEHKRDFAGFGISFD--NYGSTHSEENRELAQEIYLKLKENGYIYEKTIEQLYDPEKGMFLPDRFVK--- 139 (673)
T ss_pred ---HHHHHHHHHHHHHHHHhCCCCC--CCccCCcHHHHHHHHHHHHHHHHCCCEEEeeeEEEEeCCCCCCccchhee---
Confidence 7899999999999999999988 57889999999999999999999999999999999999999999985542
Q ss_pred CCCceEEeecCccccccceeeEeEeeecCCCcceEEEeeccccccccCcEEEEcCCccccccccCCeeecCCCCCccceE
Q 001708 335 IPKREMRNVPGYEKQVEFGVLTSFAYPLEGGLGEIVVATTRVETMLGDTAIAIHPEDARYSHLHGKFAIHPFNGRKIPII 414 (1022)
Q Consensus 335 ~~~~t~~~vp~y~~~~e~g~l~~~~y~l~~~~~~l~v~TTrPeTl~g~~avaV~P~d~ry~~L~G~~~~~P~~~~~~pIi 414 (1022)
| .||.|+..
T Consensus 140 ----------------------------------------------------------------g---~cp~C~~~---- 148 (673)
T PRK00133 140 ----------------------------------------------------------------G---TCPKCGAE---- 148 (673)
T ss_pred ----------------------------------------------------------------c---ccCCCCCc----
Confidence 1 14544321
Q ss_pred eCCccccCCCCCCceecCCCCCcchHHHHHHcCCceeeeeCCCCccccCCCCCCCCCChhhHHHHHHHHHHHcCCccccc
Q 001708 415 CDAILVDPKFGTGAVKITPAHDPNDFDVGKRHNLEFINIFTDDGKINSNGGLEFEGMPRFKAREAVNEALKKKGLYRGAK 494 (1022)
Q Consensus 415 ~~~~~V~~~~GTG~V~~~PaH~~~Dy~~~~~~~L~~i~iid~~G~~~e~~g~~f~G~~~~~ar~~vi~~L~~~gll~~~~ 494 (1022)
|.+|..|++||..+.
T Consensus 149 ----------------------------------------d~~g~~ce~cg~~~~------------------------- 163 (673)
T PRK00133 149 ----------------------------------------DQYGDNCEVCGATYS------------------------- 163 (673)
T ss_pred ----------------------------------------ccCCchhhhccccCC-------------------------
Confidence 136778889993222
Q ss_pred cccccccccccCCCceecccccccceechHHHHHHHHhhhccCCCceEEeccccHHHHHHHHh-hccCccceeccCC-CC
Q 001708 495 DNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKLELIPRQYTAEWRRWLE-AIRDWCVSRQLWW-GH 572 (1022)
Q Consensus 495 ~~~~~~p~c~Rs~~~i~~~~~~QWFi~~~~l~~~al~~v~~~~~~~i~~~P~~~~~~~~~wl~-~l~DWcISRQ~~W-G~ 572 (1022)
+.....|+|.+||.++|++.++|||++++++++.+++.+ ++ +..| |+..++.+.+||+ +++|||||||++| |+
T Consensus 164 ~~~l~~~~~~~~g~~~e~~~~~~~f~~l~~~~~~l~~~~---~~-~~~~-~~~~~~~~~~~l~~~l~d~~ISR~~~W~Gi 238 (673)
T PRK00133 164 PTELINPKSAISGATPVLKESEHFFFKLPRFEEFLKEWI---TR-SGEL-QPNVANKMKEWLEEGLQDWDISRDAPYFGF 238 (673)
T ss_pred hHhhcCCccccCCCcceEEecceEEEEHHHHHHHHHHHH---hc-CCCC-CHHHHHHHHHHHhCCCcccceeeeCCccce
Confidence 223345899999999999999999999999999999998 43 3445 8899999999996 5999999999999 99
Q ss_pred ccCcceeccCchhhhccCCCCcceEEecCHHHHHHHHhhhcCCCCcccccCCCcEEEEeccCccccccc-cCCCC--Chh
Q 001708 573 QIPAWYVTLEDDELKELGSYNDHWIVARDEKEALAVANKKFSGKKFEMCQDPDVLDTWFSSGLFPLSVL-GWPDD--TDD 649 (1022)
Q Consensus 573 pIP~~~~~~~~~~~~~~~~~~~~w~~~~~~~ea~~~~~~~~~~~~~~~~~d~DvlDtWFdSgl~p~s~l-g~p~~--~~d 649 (1022)
|+|. + +..|+|||||+.+.|++.+ +|++. ..+
T Consensus 239 pvP~------~---------------------------------------~~~~iyVW~dal~~Yl~~~~~~~~~~~~~~ 273 (673)
T PRK00133 239 EIPG------A---------------------------------------PGKVFYVWLDAPIGYISSTKNLCDKRGGLD 273 (673)
T ss_pred ECCC------C---------------------------------------CCeEEEEcccchhhhhHHHhhhcccccchh
Confidence 9992 0 2369999999999999888 68763 457
Q ss_pred hhhcCC-cC----cccccccccch----HHHHHHHHHhhhcCCCCceEEEeccceeCCCCccceecCCcccCcchhhccc
Q 001708 650 LKAFYP-TS----VLETGHDILFF----WVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGI 720 (1022)
Q Consensus 650 ~~~~~P-~d----l~~~G~Dil~f----W~a~m~~~~~~l~~~~Pfk~V~~Hg~v~D~~GrKMSKSlGNvIdP~dvI~g~ 720 (1022)
|+.||| .+ +++.|+||++| |++++++.++ .++++|++||||++ +|+|||||+||||+|.|+|+
T Consensus 274 ~~~~w~~~~~~~~v~~iGkDi~~fH~i~wpa~l~a~g~-----~lP~~v~~hg~v~~-~G~KMSKS~GNvV~p~dlie-- 345 (673)
T PRK00133 274 WDEYWKKDSDTELYHFIGKDIIYFHTLFWPAMLEGAGY-----RLPTNVFAHGFLTV-EGAKMSKSRGTFIWARTYLD-- 345 (673)
T ss_pred HHHhcCCCCCceEEEEEeecchhHHHHHHHHHHHhCCC-----CCCCEEeeeccEEe-cCCcccccCCcccCHHHHHH--
Confidence 899994 42 89999999995 8887766443 34499999999997 99999999999999999999
Q ss_pred cchhHHHhhhcCCCChHHHHHHHhcccCCCCCCCCCCCchHHHHHHHhccCCC-cccccchhhhHH--HHHHHHHHHHHH
Q 001708 721 SLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQS-DKINLDIQRVVG--YRQWCNKLWNAV 797 (1022)
Q Consensus 721 ~l~~l~~~l~~~nl~~~e~~~a~~~~~~~~~~~i~~~GaDaLR~~L~~~~~~~-~Dinf~~~~~~~--~r~f~nkl~N~~ 797 (1022)
+||+|++||||++.++.+ +|++|+++.+.. ..+++|++||.+
T Consensus 346 -----------------------------------~ygaDalR~~ll~~~~~~~~D~~Fs~~~~~~~~n~~l~~~l~Nl~ 390 (673)
T PRK00133 346 -----------------------------------HLDPDYLRYYLAAKLPETIDDLDFNWEDFQQRVNSELVGKVVNFA 390 (673)
T ss_pred -----------------------------------HcCchHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999988888 999999998643 556899999988
Q ss_pred HHHHhhcCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHhhhhHHHHHhhcccccCC-
Q 001708 798 RFSMSKLGEGFVPPLKLHPHNLPFSCKWILSVLNKAISRTASSLNSYEFSDAASTVYSWWQYQFCDVFIEAIKPYFAGD- 876 (1022)
Q Consensus 798 rf~l~~l~~~~~p~~~~~~~~~~~~D~wil~~L~~~~~~v~~a~e~~~f~~a~~~i~~f~~~~l~~~Yle~~K~~l~~~- 876 (1022)
.++...+...|.... .....|+|++++++++++.+.++|++|+|+.|++.+++|+ ++||+|++.+|||....
T Consensus 391 ~R~~~~~~k~~~~~~-----~~~~~d~~ll~~l~~~~~~v~~a~e~~~~~~a~~~l~~l~--~~~N~yi~~~kpw~~~~~ 463 (673)
T PRK00133 391 SRTAGFINKRFDGKL-----PDALADPELLEEFEAAAEKIAEAYEAREFRKALREIMALA--DFANKYVDDNEPWKLAKQ 463 (673)
T ss_pred HHHHHHHHHhcCCCC-----CCCcccHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH--HHHHHHHHhcCChhhhcC
Confidence 877655433232211 1245699999999999999999999999999999999994 79999999999984332
Q ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHhCCC
Q 001708 877 NPAFASERSAAQHVLWVCLETGLRLLHPFMPFVTEELWQRLPQ 919 (1022)
Q Consensus 877 ~~~~~~~r~~a~~~L~~~L~~~l~LL~PfmPfitEelwq~L~~ 919 (1022)
+.+ ....+..+++.+++.+++||+|||||+||+||++|+.
T Consensus 464 ~~~---~~~~~l~~~~~~l~~l~~lL~Pf~P~~ae~i~~~Lg~ 503 (673)
T PRK00133 464 DGE---RLQAVCSVGLNLFRALAIYLKPVLPELAERAEAFLNL 503 (673)
T ss_pred CHH---HHHHHHHHHHHHHHHHHHHhhChhchHHHHHHHHhCC
Confidence 222 3445666777788899999999999999999999985
No 33
>PRK12267 methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=5e-83 Score=781.24 Aligned_cols=470 Identities=24% Similarity=0.354 Sum_probs=397.7
Q ss_pred CCcEEEECCCCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeeeeeccCCccChhHHHHHHHHHHHHhCCCccccChHHHH
Q 001708 174 KPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFV 253 (1022)
Q Consensus 174 k~~f~i~~pPPy~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG~D~~Glp~q~~vEk~l~~~~~~~~~~~g~e~f~ 253 (1022)
+++|+|++|+|||||.|||||++++++.|+++||+||+|++|+|++|+|+||+||+..+++ .|+++.
T Consensus 3 ~~~~~it~~~py~ng~~HiGH~~~~~~aDv~~R~~r~~G~~v~~~~g~D~~g~~i~~~A~~-----~g~~~~-------- 69 (648)
T PRK12267 3 KKTFYITTPIYYPNGKPHIGHAYTTIAADALARYKRLQGYDVFFLTGTDEHGQKIQQAAEK-----AGKTPQ-------- 69 (648)
T ss_pred CCCEEEeeCCCCCCCCcccccchHHHHHHHHHHHHHhcCCceEeecCCCCcchHHHHHHHH-----cCCCHH--------
Confidence 4579999999999999999999999999999999999999999999999999998876643 577653
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHHHcCcEEEcceeeeecCCCCccccccccccc
Q 001708 254 SEVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDLRLVNWDCVLRTAISDIEVDYV 333 (1022)
Q Consensus 254 ~~~~~~~~~~~~~i~~ql~rlG~s~DW~r~~~T~d~~~~~~v~~~F~~L~ekGlIyr~~~~V~W~p~~~TaLsd~EVe~~ 333 (1022)
++++++.+.|+++|++||+++| .++.|+|+.|.+.|+++|.+|+++|+||++...++|||.|+++|+|.|+.
T Consensus 70 ----e~~d~~~~~fk~~l~~lgI~~D--~f~rTt~~~h~~~v~~~~~~L~~kG~IY~~~~~~~yc~~~~~~l~~~~l~-- 141 (648)
T PRK12267 70 ----EYVDEISAGFKELWKKLDISYD--KFIRTTDERHKKVVQKIFEKLYEQGDIYKGEYEGWYCVSCETFFTESQLV-- 141 (648)
T ss_pred ----HHHHHHHHHHHHHHHHcCCCCC--CCeeCCCHHHHHHHHHHHHHHHHCCCEEEeeEEEeecCCCCccCChHHhc--
Confidence 7889999999999999999988 67889999999999999999999999999999999999999988873320
Q ss_pred cCCCceEEeecCccccccceeeEeEeeecCCCcceEEEeeccccccccCcEEEEcCCccccccccCCeeecCCCCCccce
Q 001708 334 DIPKREMRNVPGYEKQVEFGVLTSFAYPLEGGLGEIVVATTRVETMLGDTAIAIHPEDARYSHLHGKFAIHPFNGRKIPI 413 (1022)
Q Consensus 334 ~~~~~t~~~vp~y~~~~e~g~l~~~~y~l~~~~~~l~v~TTrPeTl~g~~avaV~P~d~ry~~L~G~~~~~P~~~~~~pI 413 (1022)
T Consensus 142 -------------------------------------------------------------------------------- 141 (648)
T PRK12267 142 -------------------------------------------------------------------------------- 141 (648)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EeCCccccCCCCCCceecCCCCCcchHHHHHHcCCceeeeeCCCCccccCCCCCCCCCChhhHHHHHHHHHHHcCCcccc
Q 001708 414 ICDAILVDPKFGTGAVKITPAHDPNDFDVGKRHNLEFINIFTDDGKINSNGGLEFEGMPRFKAREAVNEALKKKGLYRGA 493 (1022)
Q Consensus 414 i~~~~~V~~~~GTG~V~~~PaH~~~Dy~~~~~~~L~~i~iid~~G~~~e~~g~~f~G~~~~~ar~~vi~~L~~~gll~~~ 493 (1022)
+
T Consensus 142 -------~------------------------------------------------------------------------ 142 (648)
T PRK12267 142 -------D------------------------------------------------------------------------ 142 (648)
T ss_pred -------c------------------------------------------------------------------------
Confidence 0
Q ss_pred ccccccccccccCCCceecccccccceechHHHHHHHHhhhccCCCceEEeccccHHHHH-HHHhh-ccCccceecc-CC
Q 001708 494 KDNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKLELIPRQYTAEWR-RWLEA-IRDWCVSRQL-WW 570 (1022)
Q Consensus 494 ~~~~~~~p~c~Rs~~~i~~~~~~QWFi~~~~l~~~al~~v~~~~~~~i~~~P~~~~~~~~-~wl~~-l~DWcISRQ~-~W 570 (1022)
.|+|+|||.+++++.++|||++++++++++++++ ++....+.|+..++++. +||++ ++|||||||+ .|
T Consensus 143 ------~~~c~~cg~~~e~~~~~~~f~~l~~~~~~l~~~~---~~~~~~~~p~~~~~~~~~~~l~~~l~D~~ISR~~~~W 213 (648)
T PRK12267 143 ------GGKCPDCGREVELVKEESYFFRMSKYQDRLLEYY---EENPDFIQPESRKNEMINNFIKPGLEDLSISRTSFDW 213 (648)
T ss_pred ------CCcCCCCCCcCeEEecceEEEEcHHHHHHHHHHH---hhCCcccCCHHHHHHHHHHHhhCCCCCcccCCCCCCc
Confidence 1579999999999999999999999999999999 54444567999999999 99986 9999999996 79
Q ss_pred CCccCcceeccCchhhhccCCCCcceEEecCHHHHHHHHhhhcCCCCcccccCCCcEEEEeccCccccccccCCC-CChh
Q 001708 571 GHQIPAWYVTLEDDELKELGSYNDHWIVARDEKEALAVANKKFSGKKFEMCQDPDVLDTWFSSGLFPLSVLGWPD-DTDD 649 (1022)
Q Consensus 571 G~pIP~~~~~~~~~~~~~~~~~~~~w~~~~~~~ea~~~~~~~~~~~~~~~~~d~DvlDtWFdSgl~p~s~lg~p~-~~~d 649 (1022)
|+|||.+ +.+|+||||||+++|++.++||. +..+
T Consensus 214 GipvP~~---------------------------------------------~~~v~yVWfDA~~~y~s~~~~~~~~~~~ 248 (648)
T PRK12267 214 GIPVPFD---------------------------------------------PKHVVYVWIDALLNYITALGYGSDDDEL 248 (648)
T ss_pred ceECCCC---------------------------------------------CCCEEEEcccchHHHHHHcCCCCCCchH
Confidence 9999941 13799999999999999999986 3457
Q ss_pred hhhcCCcCcccccccccchHHHHHHHHHhhhcCCCCceEEEeccceeCCCCccceecCCcccCcchhhccccchhHHHhh
Q 001708 650 LKAFYPTSVLETGHDILFFWVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLEGLHKRL 729 (1022)
Q Consensus 650 ~~~~~P~dl~~~G~Dil~fW~a~m~~~~~~l~~~~Pfk~V~~Hg~v~D~~GrKMSKSlGNvIdP~dvI~g~~l~~l~~~l 729 (1022)
|+.|||+|++++|+||++||.....++-+. .|..||++|++|||+++ +|+|||||+||||+|.++|+
T Consensus 249 ~~~~wp~~~~~~GkDii~fH~i~wpa~l~~-~~~~~p~~v~~hg~l~~-eg~KMSKS~GN~i~p~d~l~----------- 315 (648)
T PRK12267 249 FKKFWPADVHLVGKDILRFHAIYWPIMLMA-LGLPLPKKVFAHGWWLM-KDGKMSKSKGNVVDPEELVD----------- 315 (648)
T ss_pred HHhhcccceEEEeeeecchhHHHHHHHHHh-CCCCCCcEEEecceEEE-CCceecccCCcccCHHHHHH-----------
Confidence 999999999999999999644332111111 24568899999999995 69999999999999999998
Q ss_pred hcCCCChHHHHHHHhcccCCCCCCCCCCCchHHHHHHHhccCCCcccccchhhhHH--HHHHHHHHHHHHHHHHhhcCCC
Q 001708 730 EEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLDIQRVVG--YRQWCNKLWNAVRFSMSKLGEG 807 (1022)
Q Consensus 730 ~~~nl~~~e~~~a~~~~~~~~~~~i~~~GaDaLR~~L~~~~~~~~Dinf~~~~~~~--~r~f~nkl~N~~rf~l~~l~~~ 807 (1022)
.||+|+|||||++.++.++|.+|+++.+.. .+.|+|+|+|++.+++..+...
T Consensus 316 --------------------------~ygaD~lR~~L~~~~~~~~D~~fs~~~~~~~~n~~l~~~lgNl~~R~~~~~~~~ 369 (648)
T PRK12267 316 --------------------------RYGLDALRYYLLREVPFGSDGDFSPEALVERINSDLANDLGNLLNRTVAMINKY 369 (648)
T ss_pred --------------------------HcCCcHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 899999999999988899999999999755 3458999999988776554332
Q ss_pred CCCCCCCCCCCCChhhHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHhhhhHHHHHhhcccccCCCcccHHHHHHH
Q 001708 808 FVPPLKLHPHNLPFSCKWILSVLNKAISRTASSLNSYEFSDAASTVYSWWQYQFCDVFIEAIKPYFAGDNPAFASERSAA 887 (1022)
Q Consensus 808 ~~p~~~~~~~~~~~~D~wil~~L~~~~~~v~~a~e~~~f~~a~~~i~~f~~~~l~~~Yle~~K~~l~~~~~~~~~~r~~a 887 (1022)
|..... .....+..|+|++++++++++.+.++|++|+|++|++.+++|+ .+||.|++..|||....++......+.+
T Consensus 370 ~~~~~p-~~~~~~~~D~~ll~~l~~~~~~v~~~~e~~~~~~al~~i~~~~--~~~N~Yi~~~kpW~~~~~~~~~~~~~~~ 446 (648)
T PRK12267 370 FDGEIP-APGNVTEFDEELIALAEETLKNYEELMEELQFSRALEEVWKLI--SRANKYIDETAPWVLAKDEGKKERLATV 446 (648)
T ss_pred cCCcCC-CCCCCchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH--HHHHHHHHhCCChhhhcCcccHHHHHHH
Confidence 221110 0123467899999999999999999999999999999999995 5899999999999543221101123445
Q ss_pred HHHHHHHHHHHHHHHhchhhHHHHHHHHhCCC
Q 001708 888 QHVLWVCLETGLRLLHPFMPFVTEELWQRLPQ 919 (1022)
Q Consensus 888 ~~~L~~~L~~~l~LL~PfmPfitEelwq~L~~ 919 (1022)
..+++.+|+.+++||+|||||+||+||+.|+.
T Consensus 447 l~~~~~~l~~~~~lL~P~~P~~ae~i~~~Lg~ 478 (648)
T PRK12267 447 MYHLAESLRKVAVLLSPFMPETSKKIFEQLGL 478 (648)
T ss_pred HHHHHHHHHHHHHHHhCccchHHHHHHHHcCC
Confidence 66777888888999999999999999999985
No 34
>PLN02610 probable methionyl-tRNA synthetase
Probab=100.00 E-value=8.6e-81 Score=765.48 Aligned_cols=493 Identities=15% Similarity=0.208 Sum_probs=406.8
Q ss_pred CCCCcEEEECCCCCCCCCCCcchhHH-HHHHHHHHHHHHhCCCeeeeeccCCccChhHHHHHHHHHHHHhCCCccccChH
Q 001708 172 SSKPSFVIVLPPPNVTGALHIGHALT-TAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGRE 250 (1022)
Q Consensus 172 ~~k~~f~i~~pPPy~nG~LHiGHal~-~~i~Dii~Ry~rm~G~~Vl~~pG~D~~Glp~q~~vEk~l~~~~~~~~~~~g~e 250 (1022)
+++++|+|++|||||||.|||||+++ ++.+|+++||+||+|++|+|++|+|+||+||+..+++ .|+++
T Consensus 14 ~~~~~~~ITt~~pY~Ng~~HlGH~~~~~l~aDv~aRy~r~~G~~v~f~~GtDehG~~i~~~A~~-----~g~~p------ 82 (801)
T PLN02610 14 PGKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNAIYICGTDEYGTATETKALE-----ENCTP------ 82 (801)
T ss_pred CCCCCEEEeCCCCCCCCCcccchhhhhHHHHHHHHHHHHhCCCceEecccccCCcHHHHHHHHH-----cCCCH------
Confidence 45668999999999999999999996 6779999999999999999999999999999988864 46665
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHHHcCcEEEcceeeeecCCCCcccccccc
Q 001708 251 QFVSEVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDLRLVNWDCVLRTAISDIEV 330 (1022)
Q Consensus 251 ~f~~~~~~~~~~~~~~i~~ql~rlG~s~DW~r~~~T~d~~~~~~v~~~F~~L~ekGlIyr~~~~V~W~p~~~TaLsd~EV 330 (1022)
++|++++++.++++|++||+++| ++++|+||.|.++|+++|.+|+++|+||++.+.++|||+|+|+|+|..|
T Consensus 83 ------~e~~d~~~~~~~~~~~~l~i~~D--~f~rT~~~~h~~~vq~~f~~L~~~G~Iy~~~~~~~yc~~~e~fl~d~~v 154 (801)
T PLN02610 83 ------KEICDKYHAIHKEVYDWFDISFD--KFGRTSTPQQTEICQAIFKKLMENNWLSENTMQQLYCDTCQKFLADRLV 154 (801)
T ss_pred ------HHHHHHHHHHHHHHHHHcCCccc--cCccCCCHHHHHHHHHHHHHHHHCCCEEEeeEEEeecCCCCCCcchHHh
Confidence 58899999999999999999988 8889999999999999999999999999999999999999999999665
Q ss_pred ccccCCCceEEeecCccccccceeeEeEeeecCCCcceEEEeeccccccccCcEEEEcCCccccccccCCeeecCC--CC
Q 001708 331 DYVDIPKREMRNVPGYEKQVEFGVLTSFAYPLEGGLGEIVVATTRVETMLGDTAIAIHPEDARYSHLHGKFAIHPF--NG 408 (1022)
Q Consensus 331 e~~~~~~~t~~~vp~y~~~~e~g~l~~~~y~l~~~~~~l~v~TTrPeTl~g~~avaV~P~d~ry~~L~G~~~~~P~--~~ 408 (1022)
+. .||. |+
T Consensus 155 ~G----------------------------------------------------------------------~CP~~~C~ 164 (801)
T PLN02610 155 EG----------------------------------------------------------------------TCPTEGCN 164 (801)
T ss_pred cC----------------------------------------------------------------------cCCccccC
Confidence 31 2565 32
Q ss_pred CccceEeCCccccCCCCCCceecCCCCCcchHHHHHHcCCceeeeeCCCCccccCCCCCCCCCChhhHHHHHHHHHHHcC
Q 001708 409 RKIPIICDAILVDPKFGTGAVKITPAHDPNDFDVGKRHNLEFINIFTDDGKINSNGGLEFEGMPRFKAREAVNEALKKKG 488 (1022)
Q Consensus 409 ~~~pIi~~~~~V~~~~GTG~V~~~PaH~~~Dy~~~~~~~L~~i~iid~~G~~~e~~g~~f~G~~~~~ar~~vi~~L~~~g 488 (1022)
.. +.+|..|++||.
T Consensus 165 ~~--------------------------------------------~a~Gd~Ce~Cg~---------------------- 178 (801)
T PLN02610 165 YD--------------------------------------------SARGDQCEKCGK---------------------- 178 (801)
T ss_pred cc--------------------------------------------ccccchhhhccc----------------------
Confidence 10 126778899982
Q ss_pred CccccccccccccccccCCCceecccccccceechHHHHHHHHhhhccCCCceEEeccccHH---HHHHHHh-hccCccc
Q 001708 489 LYRGAKDNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKLELIPRQYTA---EWRRWLE-AIRDWCV 564 (1022)
Q Consensus 489 ll~~~~~~~~~~p~c~Rs~~~i~~~~~~QWFi~~~~l~~~al~~v~~~~~~~i~~~P~~~~~---~~~~wl~-~l~DWcI 564 (1022)
...+..+..|+|++||.+++.+-+.|||++++++++++++++ ++.. +.|.+..+ .+.+||+ +++||||
T Consensus 179 ---~~~p~eLi~p~c~~~g~~~~~~~~~~~ff~Ls~~~~~L~~~~---~~~~--~~~~~~~n~~~~~~~~l~~gL~d~~I 250 (801)
T PLN02610 179 ---LLNPTELIDPKCKVCKNTPRIRDTDHLFLELPLLKDKLVEYI---NETS--VAGGWSQNAIQTTNAWLRDGLKPRCI 250 (801)
T ss_pred ---cCChhhhcCCcccCCCCcceEEEcceEEEEhHHHHHHHHHHH---HhCC--CCCCcCHHHHHHHHHHHhCCCCCcce
Confidence 234566778999999999999999999999999999999998 4332 45655554 4458996 6999999
Q ss_pred eeccCCCCccCcceeccCchhhhccCCCCcceEEecCHHHHHHHHhhhcCCCCcccccCCCcEEEEeccCccccccc-cC
Q 001708 565 SRQLWWGHQIPAWYVTLEDDELKELGSYNDHWIVARDEKEALAVANKKFSGKKFEMCQDPDVLDTWFSSGLFPLSVL-GW 643 (1022)
Q Consensus 565 SRQ~~WG~pIP~~~~~~~~~~~~~~~~~~~~w~~~~~~~ea~~~~~~~~~~~~~~~~~d~DvlDtWFdSgl~p~s~l-g~ 643 (1022)
||+..||+|+|. .+ -+..|++||||+.+.|++.+ +|
T Consensus 251 sR~~~WGipvP~-----~~--------------------------------------~~~~v~YVWfDAl~~Yis~~~~~ 287 (801)
T PLN02610 251 TRDLKWGVPVPL-----EK--------------------------------------YKDKVFYVWFDAPIGYVSITACY 287 (801)
T ss_pred eeecCCcccCCC-----CC--------------------------------------CCCcEEEEehhhHHHHHHHHhhh
Confidence 999999999994 00 02379999999999999987 77
Q ss_pred CCCChhhhhcCCc--C---cccccccccch----HHHHHHHHHhhhcCCCCceEEEeccceeCCCCccceecCCcccCcc
Q 001708 644 PDDTDDLKAFYPT--S---VLETGHDILFF----WVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPL 714 (1022)
Q Consensus 644 p~~~~d~~~~~P~--d---l~~~G~Dil~f----W~a~m~~~~~~l~~~~Pfk~V~~Hg~v~D~~GrKMSKSlGNvIdP~ 714 (1022)
.. +|+.|||. + +++.|+||++| |++++++.+... .++++|++|||+. .+|+|||||+||||+|.
T Consensus 288 ~~---~~~~~W~~~~~~~~~hfiGKDi~~fH~i~wPa~L~a~g~~~---~~p~~i~~~g~l~-~eG~KMSKS~GNvV~p~ 360 (801)
T PLN02610 288 TP---EWEKWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGENW---TMMKTISVTEYLN-YEGGKFSKSKGVGVFGN 360 (801)
T ss_pred hh---HHHHhcCCcccceEEEEEeeecchhHHHHHHHHHHhCCCCc---CCCCEEEeccCEe-cCCceecCcCCcccCHH
Confidence 53 58889976 6 79999999987 676665544311 1349999999997 89999999999999999
Q ss_pred hhhccccchhHHHhhhcCCCChHHHHHHHhcccCCCCCCCCC-CCchHHHHHHHhccCCCcccccchhhhHHH-H-HHHH
Q 001708 715 EVINGISLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPE-CGTDALRFALVSYTAQSDKINLDIQRVVGY-R-QWCN 791 (1022)
Q Consensus 715 dvI~g~~l~~l~~~l~~~nl~~~e~~~a~~~~~~~~~~~i~~-~GaDaLR~~L~~~~~~~~Dinf~~~~~~~~-r-~f~n 791 (1022)
++++ . ||+|++||||++..+.++|.+|+++.+... + .++|
T Consensus 361 ~~i~-------------------------------------~~yg~D~lRyyLl~~~p~~~D~dFs~~~f~~~~NsdL~n 403 (801)
T PLN02610 361 DAKD-------------------------------------TNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKLNSELLN 403 (801)
T ss_pred HHHh-------------------------------------ccCCchHhHHHhhhcCCCCCCCcCCHHHHHHHHHHHHHH
Confidence 9998 5 999999999999999999999999987654 3 3899
Q ss_pred HHHHHHHHHHhhcC----CCCCCCCCC-CCCCCChhhHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHhhhhHHHH
Q 001708 792 KLWNAVRFSMSKLG----EGFVPPLKL-HPHNLPFSCKWILSVLNKAISRTASSLNSYEFSDAASTVYSWWQYQFCDVFI 866 (1022)
Q Consensus 792 kl~N~~rf~l~~l~----~~~~p~~~~-~~~~~~~~D~wil~~L~~~~~~v~~a~e~~~f~~a~~~i~~f~~~~l~~~Yl 866 (1022)
+|+|++.+++..+. +.|...... .......+|+|++++++++++.+.++|++|+|+.|++.|++| .++||+||
T Consensus 404 ~lGNlv~R~~~~i~~~~~k~~~g~vp~~~~~~~~~~d~~Ll~~~~~~i~~v~~~me~~~~~~Al~~I~~l--~~~~NkYI 481 (801)
T PLN02610 404 NLGNFINRVLSFIAKPPGAGYGSVIPDAPGAESHPLTKKLAEKVGKLVEQYVEAMEKVKLKQGLKTAMSI--SSEGNAYL 481 (801)
T ss_pred HHHHHHHHHHHHHHhhhhhccCCcCCCccccccchhhHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH--HHHHHHHH
Confidence 99998877665543 223221100 011234579999999999999999999999999999999998 79999999
Q ss_pred Hhhcccc-cCCCcccHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHhCCC
Q 001708 867 EAIKPYF-AGDNPAFASERSAAQHVLWVCLETGLRLLHPFMPFVTEELWQRLPQ 919 (1022)
Q Consensus 867 e~~K~~l-~~~~~~~~~~r~~a~~~L~~~L~~~l~LL~PfmPfitEelwq~L~~ 919 (1022)
+..+||- ..++.+ +...+..++.++++.+++||+||||++||+||++|+.
T Consensus 482 e~~kPW~L~k~d~~---~l~~vl~~~le~lr~la~LL~PfmP~~aeeI~~~Lg~ 532 (801)
T PLN02610 482 QESQFWKLYKEDKP---SCAIVVKTSVGLVYLLACLLEPFMPSFSKEVLKQLNL 532 (801)
T ss_pred HhcCchhhhCCCHH---HHHHHHHHHHHHHHHHHHHHhCcccHHHHHHHHHhCC
Confidence 9999994 333222 2334555566688899999999999999999999985
No 35
>PRK11893 methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.2e-80 Score=743.58 Aligned_cols=464 Identities=24% Similarity=0.371 Sum_probs=401.3
Q ss_pred CcEEEECCCCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeeeeeccCCccChhHHHHHHHHHHHHhCCCccccChHHHHH
Q 001708 175 PSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVS 254 (1022)
Q Consensus 175 ~~f~i~~pPPy~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG~D~~Glp~q~~vEk~l~~~~~~~~~~~g~e~f~~ 254 (1022)
++|+|++|||||||.|||||++++++.|+++||+||+|++|.|++|+|+||.||+..++ +.|+++
T Consensus 1 ~~~~i~~~~P~~~g~~HiGh~~~~~~~Dv~~R~~r~~G~~v~~v~g~dd~g~~i~~~a~-----~~g~~~---------- 65 (511)
T PRK11893 1 KKFYITTPIYYPNGKPHIGHAYTTLAADVLARFKRLRGYDVFFLTGTDEHGQKIQRKAE-----EAGISP---------- 65 (511)
T ss_pred CCEEEecCCCCCCCCcccchhHHHHHHHHHHHHHHhcCCcEEecCCCCCCChHHHHHHH-----HcCCCH----------
Confidence 36999999999999999999999999999999999999999999999999999876654 357664
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHHHcCcEEEcceeeeecCCCCcccccccccccc
Q 001708 255 EVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDLRLVNWDCVLRTAISDIEVDYVD 334 (1022)
Q Consensus 255 ~~~~~~~~~~~~i~~ql~rlG~s~DW~r~~~T~d~~~~~~v~~~F~~L~ekGlIyr~~~~V~W~p~~~TaLsd~EVe~~~ 334 (1022)
.++++.++..|+++|++||+.+| ..+.|+++.|...|+++|.+|+++|+||++.+.|+||+.|+|+|++.|+.
T Consensus 66 --~~~~~~~~~~~~~~l~~l~I~~D--~~~~t~~~~~~~~v~~~~~~L~~~G~iY~~~~~~~~~~~~~~~l~~~~l~--- 138 (511)
T PRK11893 66 --QELADRNSAAFKRLWEALNISYD--DFIRTTDPRHKEAVQEIFQRLLANGDIYLGKYEGWYCVRCEEFYTESELI--- 138 (511)
T ss_pred --HHHHHHHHHHHHHHHHHhCCCcC--CceeCCCHHHHHHHHHHHHHHHHCCCEEEeeeeeeccccccccCCHHHhc---
Confidence 37789999999999999999877 56789999999999999999999999999999999999999999874421
Q ss_pred CCCceEEeecCccccccceeeEeEeeecCCCcceEEEeeccccccccCcEEEEcCCccccccccCCeeecCCCCCccceE
Q 001708 335 IPKREMRNVPGYEKQVEFGVLTSFAYPLEGGLGEIVVATTRVETMLGDTAIAIHPEDARYSHLHGKFAIHPFNGRKIPII 414 (1022)
Q Consensus 335 ~~~~t~~~vp~y~~~~e~g~l~~~~y~l~~~~~~l~v~TTrPeTl~g~~avaV~P~d~ry~~L~G~~~~~P~~~~~~pIi 414 (1022)
T Consensus 139 -------------------------------------------------------------------------------- 138 (511)
T PRK11893 139 -------------------------------------------------------------------------------- 138 (511)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eCCccccCCCCCCceecCCCCCcchHHHHHHcCCceeeeeCCCCccccCCCCCCCCCChhhHHHHHHHHHHHcCCccccc
Q 001708 415 CDAILVDPKFGTGAVKITPAHDPNDFDVGKRHNLEFINIFTDDGKINSNGGLEFEGMPRFKAREAVNEALKKKGLYRGAK 494 (1022)
Q Consensus 415 ~~~~~V~~~~GTG~V~~~PaH~~~Dy~~~~~~~L~~i~iid~~G~~~e~~g~~f~G~~~~~ar~~vi~~L~~~gll~~~~ 494 (1022)
+ +
T Consensus 139 ------------------------------------------------~-~----------------------------- 140 (511)
T PRK11893 139 ------------------------------------------------E-D----------------------------- 140 (511)
T ss_pred ------------------------------------------------C-C-----------------------------
Confidence 0 0
Q ss_pred cccccccccccCCCceecccccccceechHHHHHHHHhhhccCCCceEEeccccHHHHHHHHh-hccCcccee-ccCCCC
Q 001708 495 DNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKLELIPRQYTAEWRRWLE-AIRDWCVSR-QLWWGH 572 (1022)
Q Consensus 495 ~~~~~~p~c~Rs~~~i~~~~~~QWFi~~~~l~~~al~~v~~~~~~~i~~~P~~~~~~~~~wl~-~l~DWcISR-Q~~WG~ 572 (1022)
.|+|+|||++++++.++|||++++.+++++.+.+ +++...+.|+..++++.+||+ +++|||||| |++||+
T Consensus 141 -----~p~~~~~~~~~~~~~~~~~f~~l~~~~~~l~~~~---~~~~~~~~p~~~~~~~~~~l~~~~~D~~isR~~~~WGi 212 (511)
T PRK11893 141 -----GYRCPPTGAPVEWVEEESYFFRLSKYQDKLLELY---EANPDFIQPASRRNEVISFVKSGLKDLSISRTNFDWGI 212 (511)
T ss_pred -----CCCCCCCCCcceEEecCeEEEEcHHHHHHHHHHH---HhCCCccCCHHHHHHHHHHHHCCCCCcccCCCCCCCCc
Confidence 0799999999999999999999999999999998 533334579999999999998 599999999 999999
Q ss_pred ccCcceeccCchhhhccCCCCcceEEecCHHHHHHHHhhhcCCCCcccccCCCcEEEEeccCccccccccCCCCC----h
Q 001708 573 QIPAWYVTLEDDELKELGSYNDHWIVARDEKEALAVANKKFSGKKFEMCQDPDVLDTWFSSGLFPLSVLGWPDDT----D 648 (1022)
Q Consensus 573 pIP~~~~~~~~~~~~~~~~~~~~w~~~~~~~ea~~~~~~~~~~~~~~~~~d~DvlDtWFdSgl~p~s~lg~p~~~----~ 648 (1022)
|||.+ +.+|+||||||++.|++.++||.+. +
T Consensus 213 piP~~---------------------------------------------~~~~~~vWfda~~~y~s~~~~p~~~~~~~~ 247 (511)
T PRK11893 213 PVPGD---------------------------------------------PKHVIYVWFDALTNYLTALGYPDDEELLAE 247 (511)
T ss_pred cCCCC---------------------------------------------CCceEEEEecCcHHHHhHhccccccccchh
Confidence 99941 2379999999999999999998753 3
Q ss_pred hhhhcCCcCcccccccccchHHHHHHHHHhhhcCCCCceEEEeccceeCCCCccceecCCcccCcchhhccccchhHHHh
Q 001708 649 DLKAFYPTSVLETGHDILFFWVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLEGLHKR 728 (1022)
Q Consensus 649 d~~~~~P~dl~~~G~Dil~fW~a~m~~~~~~l~~~~Pfk~V~~Hg~v~D~~GrKMSKSlGNvIdP~dvI~g~~l~~l~~~ 728 (1022)
+|.+|||.|++++|+||++||....+++..++..+.| +.+++||||++ +|+|||||+||+|+|.|+|+
T Consensus 248 ~~~~~~~~D~~~~G~D~~~~h~~~~~a~~~a~~~~~p-~~~~~~g~v~~-~G~KMSKS~GN~i~~~dll~---------- 315 (511)
T PRK11893 248 LFNKYWPADVHLIGKDILRFHAVYWPAFLMAAGLPLP-KRVFAHGFLTL-DGEKMSKSLGNVIDPFDLVD---------- 315 (511)
T ss_pred HHHhcCCCcceEecccccccchhHHHHHHHhCCCCCC-CEEEeeccEEE-CCeeecccCCcEEcHHHHHH----------
Confidence 6899999999999999999988888777777666778 99999999995 89999999999999999999
Q ss_pred hhcCCCChHHHHHHHhcccCCCCCCCCCCCchHHHHHHHhccCCCcccccchhhhHHH--HHHHHHHHHHHHHHHhhcC-
Q 001708 729 LEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLDIQRVVGY--RQWCNKLWNAVRFSMSKLG- 805 (1022)
Q Consensus 729 l~~~nl~~~e~~~a~~~~~~~~~~~i~~~GaDaLR~~L~~~~~~~~Dinf~~~~~~~~--r~f~nkl~N~~rf~l~~l~- 805 (1022)
+||+|++||||++.++.++|++|+.+.+... ..++++++|+...+...+.
T Consensus 316 ---------------------------~~g~DalR~~ll~~~~~~~d~~Fs~~~~~~~~~~~l~~~l~n~~~r~~~~~~~ 368 (511)
T PRK11893 316 ---------------------------EYGVDAVRYFLLREIPFGQDGDFSREAFINRINADLANDLGNLAQRTLSMIAK 368 (511)
T ss_pred ---------------------------HcCcHHHHHHHHhcCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999888889999999998653 3488999998764443322
Q ss_pred --CCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHhhhhHHHHHhhcccccCC-CcccHH
Q 001708 806 --EGFVPPLKLHPHNLPFSCKWILSVLNKAISRTASSLNSYEFSDAASTVYSWWQYQFCDVFIEAIKPYFAGD-NPAFAS 882 (1022)
Q Consensus 806 --~~~~p~~~~~~~~~~~~D~wil~~L~~~~~~v~~a~e~~~f~~a~~~i~~f~~~~l~~~Yle~~K~~l~~~-~~~~~~ 882 (1022)
+++.|.. ......|+|++++++.+++.+.++|++|+|+.|++.+++|+ ..+|.|++..|||.... +..
T Consensus 369 ~~~~~~~~~----~~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~a~~~l~~l~--~~~n~y~~~~~pw~~~~~~~~--- 439 (511)
T PRK11893 369 NFDGKVPEP----GALTEADEALLEAAAALLERVRAAMDNLAFDKALEAILALV--RAANKYIDEQAPWSLAKTDPE--- 439 (511)
T ss_pred hcCCCCCCC----cccchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH--HHHHHHHhhCCChhhhcCCHH---
Confidence 2233321 13467799999999999999999999999999999999996 67899999999985433 222
Q ss_pred HHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHhCCC
Q 001708 883 ERSAAQHVLWVCLETGLRLLHPFMPFVTEELWQRLPQ 919 (1022)
Q Consensus 883 ~r~~a~~~L~~~L~~~l~LL~PfmPfitEelwq~L~~ 919 (1022)
..+.+..+++.+++.+++||+|||||+||+||+.|+.
T Consensus 440 ~~~~~l~~~~~~l~~l~~ll~P~~P~~ae~i~~~L~~ 476 (511)
T PRK11893 440 RLATVLYTLLEVLRGIAVLLQPVMPELAAKILDQLGV 476 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHhCC
Confidence 4566778888899999999999999999999999985
No 36
>KOG0437 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.5e-81 Score=710.22 Aligned_cols=698 Identities=21% Similarity=0.293 Sum_probs=544.7
Q ss_pred hhHHHHHHHHHHHcCCcccCCC----CCCCcEEEECCCCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeeeeeccCCccC
Q 001708 150 SSVEKSWYSWWENSGYFIADNK----SSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAG 225 (1022)
Q Consensus 150 ~~vE~~w~~~W~~~~~f~~~~~----~~k~~f~i~~pPPy~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG~D~~G 225 (1022)
.+||+++|++|+.+++|+.+.. +.+|+|+++.|.||+||.||+||+++.+-.|+.+-|+||+|++|||++|++|.|
T Consensus 15 ~eiEk~~q~~W~~e~~fevda~~el~~~~~Kff~tfpyPYMNG~LHlGH~FslSK~eFa~~y~rL~Gk~vLfPfgFHCTG 94 (1080)
T KOG0437|consen 15 LEIEKKYQKKWDTEKVFEVDAPNELQKSKPKFFVTFPYPYMNGRLHLGHAFSLSKVEFASGYERLQGKNVLFPFGFHCTG 94 (1080)
T ss_pred HHHHHHHHHhhhhhhheeccCchhcccccCceeEeccccccCceeeccceeehhhhHHHHHHHHhcCceEEeecccccCC
Confidence 4799999999999999998763 567899999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHH-h--------------------------------CCC----------c------cc--cChH---H
Q 001708 226 IATQVVVEKKLMRE-R--------------------------------KLT----------R------HD--IGRE---Q 251 (1022)
Q Consensus 226 lp~q~~vEk~l~~~-~--------------------------------~~~----------~------~~--~g~e---~ 251 (1022)
+||-+.+.|.- ++ + |+. . .+ +.++ +
T Consensus 95 MPI~A~AdKLk-rEie~fG~ppdf~~e~eeEv~eev~~~~~~~~~k~kgKKsk~aaK~g~~kYQw~IM~slGl~deEI~~ 173 (1080)
T KOG0437|consen 95 MPIKASADKLK-REIELFGCPPDFPEEEEEEVEEEVKTEDAIEDVKFKGKKSKAAAKTGGQKYQWEIMESLGLPDEEIKK 173 (1080)
T ss_pred CccHHhHHHHH-HHHHHhCCCCCCchhhhhhhhhcccccccccccccccchhhHHHhhcccchhHHHHHHcCCCHHHhhc
Confidence 99988776521 11 0 110 0 01 1223 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccccCCccccCC--hhhHHHHHHHHHHHHHcCcEEEcceeeeecCCCCccccccc
Q 001708 252 FVSEVWKWKDEYGGTILRQQRRLGASLDWSRECFTMD--EKRSKAVTEAFVRLYKEGLIYRDLRLVNWDCVLRTAISDIE 329 (1022)
Q Consensus 252 f~~~~~~~~~~~~~~i~~ql~rlG~s~DW~r~~~T~d--~~~~~~v~~~F~~L~ekGlIyr~~~~V~W~p~~~TaLsd~E 329 (1022)
|.+ +..|..++...-..++++||.-+||+|.|.|+| |.|..+|.|+|.+|.+.|.|..|.|...|||.+++++.|++
T Consensus 174 F~d-~~~WL~yFPpLc~~dlk~~gl~iDWRRSFITTDvNpYyDsFVRWQ~n~L~~~gkI~fgkRyTIyspkDgQpCmDHD 252 (1080)
T KOG0437|consen 174 FAD-PKHWLYYFPPLCERDLKRFGLGIDWRRSFITTDVNPYYDSFVRWQFNKLKEAGKIKFGKRYTIYSPKDGQPCMDHD 252 (1080)
T ss_pred ccC-hhHHHHhCChHHHHHHHHhCCCcceeeeeeecccchhHHHHHHHHHHHHHhcCCcccCcceeeecCCCCCcccccc
Confidence 433 678999999999999999999999999999987 89999999999999999999999999999999999999998
Q ss_pred cccccCCCc---eEEeecCccccccceeeEeEeeecCCCcceEEEeeccccccccCcEEEEcCCccc-------------
Q 001708 330 VDYVDIPKR---EMRNVPGYEKQVEFGVLTSFAYPLEGGLGEIVVATTRVETMLGDTAIAIHPEDAR------------- 393 (1022)
Q Consensus 330 Ve~~~~~~~---t~~~vp~y~~~~e~g~l~~~~y~l~~~~~~l~v~TTrPeTl~g~~avaV~P~d~r------------- 393 (1022)
-...|-.++ |++++...+..- ..| -.+.+.+.+++.||.|||||+|.|+.+|+|+.+.
T Consensus 253 R~sGEgV~PqeytliKle~le~~p--~~l----~~~~~~~v~lvAaTLRpetmyGQTnc~V~p~~~y~~fe~~~~~e~fi 326 (1080)
T KOG0437|consen 253 RASGEGVGPQEYTLIKLEVLEPFP--KAL----SSLKDLRVYLVAATLRPETMYGQTNCYVGPDIKYGGFEACNETEVFI 326 (1080)
T ss_pred cccCCCCCcceEEEEEEEecccch--hhc----cccccceeeeeehhcCCccccCccceEEcCCccEEeEEecCCceEEE
Confidence 865554443 444432211100 000 0123345789999999999999999999999531
Q ss_pred ----------c------------------ccccCCeeecCCC-CCccceEeCCccccCCCCCCceecCCCCCcchHHHHH
Q 001708 394 ----------Y------------------SHLHGKFAIHPFN-GRKIPIICDAILVDPKFGTGAVKITPAHDPNDFDVGK 444 (1022)
Q Consensus 394 ----------y------------------~~L~G~~~~~P~~-~~~~pIi~~~~~V~~~~GTG~V~~~PaH~~~Dy~~~~ 444 (1022)
| .+|+|..+..|+. ...+.+++... |..+.|||+|.++|+.+|+||..++
T Consensus 327 ~t~raa~NmsyQ~~tk~~g~~~~~~~i~G~~~iGa~l~aPlsv~~~vy~LPMlT-i~~~KGTGvVtsVpsdsPDDf~al~ 405 (1080)
T KOG0437|consen 327 ATERAARNMSYQKLTKERGVVSCLVTITGYDLIGAPLSAPLSVYERVYALPMLT-ILATKGTGVVTSVPSDSPDDFAALQ 405 (1080)
T ss_pred eehHHHhhcchhhccccCCcccceeeecchhhcCCcccCcchhhheeeecccee-eeccCCceeEEeCCCCCchhhhHHH
Confidence 1 3578888888884 45677788874 9999999999999999999999885
Q ss_pred H-------cCC-------ceeeeeCC---------------------------------------CCccccCCCCCCCCC
Q 001708 445 R-------HNL-------EFINIFTD---------------------------------------DGKINSNGGLEFEGM 471 (1022)
Q Consensus 445 ~-------~~L-------~~i~iid~---------------------------------------~G~~~e~~g~~f~G~ 471 (1022)
. ||| +++.||.- +|.|. .| +|.|.
T Consensus 406 dL~kK~~lYg~~~ew~~~E~vPii~~~~fGdl~ae~vc~~lKiqs~~dk~klaeaK~~~y~e~fy~g~ml--ig-~y~G~ 482 (1080)
T KOG0437|consen 406 DLKKKPELYGLKPEWVLFEIVPIIRIPGFGDLAAEVVCDELKIQSPNDKKKLAEAKKLAYLEGFYEGTML--IG-KYKGE 482 (1080)
T ss_pred hhhhcccccCCChhhccccccceeeccccchhhHHHHHHHHhccCchhHHHHHHhhHHHHHHhhhcceEE--Ee-ccccc
Confidence 3 232 44555431 34332 35 89999
Q ss_pred ChhhHHHHHHHHHHHcCCccccccccccccccccCCCceecccccccceechH--HHHHHHHhhhccCCCceEEeccccH
Q 001708 472 PRFKAREAVNEALKKKGLYRGAKDNEMRLGLCSRSNDVVEPMIKPQWYVNCNS--MAMEALYAVMDDDKKKLELIPRQYT 549 (1022)
Q Consensus 472 ~~~~ar~~vi~~L~~~gll~~~~~~~~~~p~c~Rs~~~i~~~~~~QWFi~~~~--l~~~al~~v~~~~~~~i~~~P~~~~ 549 (1022)
++.++++.|...|.+.|.++... +..-++-+|||+.|+..|.+||||++.+ +++.+.+.+ .+++...+..+
T Consensus 483 KVe~~K~~i~~~li~~g~a~~y~--EPEkqVmSRSGdeCiVAL~DQWYldYgE~eWKk~a~~cL-----e~l~~f~dEtR 555 (1080)
T KOG0437|consen 483 KVEDAKPKIKTDLIETGDALKYN--EPEKQVMSRSGDECIVALCDQWYLDYGEAEWKKQAKECL-----ENLNTFSDETR 555 (1080)
T ss_pred cHHhhhhHHHHHHHhcccceeec--CcchhhhccCCCceEEEeccchhhhcCcHHHHHHHHHHH-----hhhhccCHHHH
Confidence 99999999999999999987753 2334678999999999999999999975 888888888 56777788889
Q ss_pred HHHHHHHhhccCccceeccCCCCccCc---ceeccCchhhhccCCCCcceEEecCHHHHHHHHhhhcCCCCcccccC-CC
Q 001708 550 AEWRRWLEAIRDWCVSRQLWWGHQIPA---WYVTLEDDELKELGSYNDHWIVARDEKEALAVANKKFSGKKFEMCQD-PD 625 (1022)
Q Consensus 550 ~~~~~wl~~l~DWcISRQ~~WG~pIP~---~~~~~~~~~~~~~~~~~~~w~~~~~~~ea~~~~~~~~~~~~~~~~~d-~D 625 (1022)
+.|..-|+|+..|.|||....|++||+ |.+ +.+.++++|+.+|+++|-+..+...... +.-++...|- ++
T Consensus 556 ~~fE~tLdWL~~wacsRsyGLGTrlPWD~qyLv----ESLSDSTIYmAyYTvaHll~~d~~g~~~--~plgi~~~QMtde 629 (1080)
T KOG0437|consen 556 NGFEDTLDWLGQWACSRSYGLGTRLPWDEQYLV----ESLSDSTIYMAYYTVAHLLHRDLYGKVE--GPLGIKPDQMTDE 629 (1080)
T ss_pred HHHHHHHHHHHhhhhhccccCCCCCCCcHHHHH----HhcchhHHHHHHHHHHHHHHHhhccCCc--ccCCCChhhcCHH
Confidence 999999999999999999999999995 222 2356788999999998877653321110 0012333343 34
Q ss_pred cEEEEeccCccccccccCCCC-----ChhhhhcCCcCcccccccccchHHHHHHHHHhhhcC--CCCceEEEeccceeCC
Q 001708 626 VLDTWFSSGLFPLSVLGWPDD-----TDDLKAFYPTSVLETGHDILFFWVARMVMLGIKLGG--EVPFTKVYLHPMIRDA 698 (1022)
Q Consensus 626 vlDtWFdSgl~p~s~lg~p~~-----~~d~~~~~P~dl~~~G~Dil~fW~a~m~~~~~~l~~--~~Pfk~V~~Hg~v~D~ 698 (1022)
|+|.-|--+..+- .+..|++ +.+|++|||.|++++|+|++..+...++....++.. +-| +.|.++|+++ .
T Consensus 630 VwdYvF~~~~~~k-~t~i~~e~L~~lr~eF~Y~YPiDlrvsGKDLi~NHLtfflynHvAl~~~k~WP-kgiraNGHLm-L 706 (1080)
T KOG0437|consen 630 VWDYVFLNEPYPK-NTAIPEEALSNLRREFEYFYPIDLRVSGKDLIPNHLTFFLYNHVALFPEKKWP-KGIRANGHLM-L 706 (1080)
T ss_pred HHHHhhccCCCCc-CCCccHHHHHHHHHhhhcccceeeeeccccccccceeEeeeehhhhcccccCc-cceeeCceEE-e
Confidence 7776665444332 2223332 468999999999999999998888888777777754 557 9999999999 9
Q ss_pred CCccceecCCcccCcchhhccccchhHHHhhhcCCCChHHHHHHHhcccCCCCCCCCCCCchHHHHHHHhccCCCccccc
Q 001708 699 HGRKMSKSLGNVIDPLEVINGISLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINL 778 (1022)
Q Consensus 699 ~GrKMSKSlGNvIdP~dvI~g~~l~~l~~~l~~~nl~~~e~~~a~~~~~~~~~~~i~~~GaDaLR~~L~~~~~~~~Dinf 778 (1022)
+++|||||.||+.+..+.|+ ++|||+.|++|+..+++.+|.||
T Consensus 707 NsEKMSKSTGNfmTL~qaie-------------------------------------KFgad~tRlalAdaGD~veDANF 749 (1080)
T KOG0437|consen 707 NSEKMSKSTGNFMTLEQAIE-------------------------------------KFGADGTRLALADAGDGVEDANF 749 (1080)
T ss_pred cchhhccccCCeeeHHHHHH-------------------------------------HhCccceeeeeecccCCcccchh
Confidence 99999999999999999998 89999999999999999999999
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCC-CCChhhHHHHHHHHHHHHHHHhhhhcCCHHHHHHH-HHHH
Q 001708 779 DIQRVVGYRQWCNKLWNAVRFSMSKLGEGFVPPLKLHPH-NLPFSCKWILSVLNKAISRTASSLNSYEFSDAAST-VYSW 856 (1022)
Q Consensus 779 ~~~~~~~~r~f~nkl~N~~rf~l~~l~~~~~p~~~~~~~-~~~~~D~wil~~L~~~~~~v~~a~e~~~f~~a~~~-i~~f 856 (1022)
......+ ++-+|++...++...+... . .+... .....|+.+.+.+|.++....++|+...|..|++. +|+|
T Consensus 750 ~ea~AnA---aILRLyt~~ew~eEm~~~~-s---~LrtGp~~~FaDrvf~nemN~~i~~t~~aye~~~fk~aLK~Gfyd~ 822 (1080)
T KOG0437|consen 750 VEANANA---AILRLYTYVEWIEEMCENR-S---SLRTGPASTFADRVFENEMNALIAKTERAYEDTLFKDALKYGFYDL 822 (1080)
T ss_pred HHhcccH---HHHHHHHHHHHHHHHHhhH-H---hhccCchhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHH
Confidence 8765543 3446777776665444320 0 01111 22478999999999999999999999999999997 7888
Q ss_pred HHhhhhHHHHHhhcccccCCCcccHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHhCCCCCCCCCCCCeeeccCCC
Q 001708 857 WQYQFCDVFIEAIKPYFAGDNPAFASERSAAQHVLWVCLETGLRLLHPFMPFVTEELWQRLPQPKGCATKESIMLCEYPS 936 (1022)
Q Consensus 857 ~~~~l~~~Yle~~K~~l~~~~~~~~~~r~~a~~~L~~~L~~~l~LL~PfmPfitEelwq~L~~~~~~~~~~SI~~~~~P~ 936 (1022)
....|.|-+.+- + . .....++..+++...||+||.||++|.||+.+... ++++..+||.
T Consensus 823 --qaArD~Yrel~g-----~-~-------mh~dLv~r~ietqtlLLaPi~Ph~aeyiw~~~~~~------~~~v~~~wP~ 881 (1080)
T KOG0437|consen 823 --QAARDMYRELCG-----E-G-------MHRDLVFRFIETQTLLLAPICPHLAEYIWRTVLKK------NFSVNVGWPF 881 (1080)
T ss_pred --HHHHHHHHHHhc-----c-c-------ccHHHHHHHHHHHHHHHhccchHHHHHHHHHhccC------CceeecCCCC
Confidence 677888877653 1 1 22457888899999999999999999999998752 3455569998
Q ss_pred CCCC
Q 001708 937 AVEG 940 (1022)
Q Consensus 937 ~~~~ 940 (1022)
.++.
T Consensus 882 ~s~~ 885 (1080)
T KOG0437|consen 882 VSPP 885 (1080)
T ss_pred CCCH
Confidence 8753
No 37
>PLN02224 methionine-tRNA ligase
Probab=100.00 E-value=3.3e-78 Score=723.58 Aligned_cols=477 Identities=20% Similarity=0.315 Sum_probs=392.3
Q ss_pred HcCCcccCCC-----CCCCcEEEECCCCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeeeeeccCCccChhHHHHHHHHH
Q 001708 162 NSGYFIADNK-----SSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 236 (1022)
Q Consensus 162 ~~~~f~~~~~-----~~k~~f~i~~pPPy~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG~D~~Glp~q~~vEk~l 236 (1022)
++.+|.++.+ ..+++|+|++|||||||.||||||++++++|+++||+||+|++|+|++|||+||+||+..+++
T Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~ittp~pY~NG~~HiGHa~~~~~aDviaR~~r~~G~~V~fv~G~DehG~kI~~~A~~-- 128 (616)
T PLN02224 51 KRALYCTSSSQESTVDEADTFVLTTPLYYVNAPPHMGSAYTTIAADSIARFQRLLGKKVIFITGTDEHGEKIATSAAA-- 128 (616)
T ss_pred cceeeccCCCcccCCCCCCeEEEeCCCCCCCCCCchhccHHHHHHHHHHHHHHhcCCceEEecCcCCcchHHHHHHHH--
Confidence 3456655543 234689999999999999999999999999999999999999999999999999998877643
Q ss_pred HHHhCCCccccChHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHHHcCcEEEcceeee
Q 001708 237 MRERKLTRHDIGREQFVSEVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDLRLVN 316 (1022)
Q Consensus 237 ~~~~~~~~~~~g~e~f~~~~~~~~~~~~~~i~~ql~rlG~s~DW~r~~~T~d~~~~~~v~~~F~~L~ekGlIyr~~~~V~ 316 (1022)
.|+++ .+++++++..+++++++||+++| ++++|++|.|.+.|+++|.+|+++|+||++.++++
T Consensus 129 ---~g~~p------------~e~~~~~~~~~~~~~~~l~I~~D--~f~rTt~~~h~~~vq~~f~~L~~~G~Iy~~~~~~~ 191 (616)
T PLN02224 129 ---NGRNP------------PEHCDIISQSYRTLWKDLDIAYD--KFIRTTDPKHEAIVKEFYARVFANGDIYRADYEGL 191 (616)
T ss_pred ---cCCCh------------HHHHHHHHHHHHHHHHHcCCCCC--cCeeCCCHHHHHHHHHHHHHHHHCCCEEEeeeeee
Confidence 56664 36778888899999999999666 99999999999999999999999999999999999
Q ss_pred ecCCCCccccccccccccCCCceEEeecCccccccceeeEeEeeecCCCcceEEEeeccccccccCcEEEEcCCcccccc
Q 001708 317 WDCVLRTAISDIEVDYVDIPKREMRNVPGYEKQVEFGVLTSFAYPLEGGLGEIVVATTRVETMLGDTAIAIHPEDARYSH 396 (1022)
Q Consensus 317 W~p~~~TaLsd~EVe~~~~~~~t~~~vp~y~~~~e~g~l~~~~y~l~~~~~~l~v~TTrPeTl~g~~avaV~P~d~ry~~ 396 (1022)
|||+|++.+.+.|+.
T Consensus 192 yc~~ce~f~~~~~l~----------------------------------------------------------------- 206 (616)
T PLN02224 192 YCVNCEEYKDEKELL----------------------------------------------------------------- 206 (616)
T ss_pred ecCCCCCCCCHHHHc-----------------------------------------------------------------
Confidence 999998766542220
Q ss_pred ccCCeeecCCCCCccceEeCCccccCCCCCCceecCCCCCcchHHHHHHcCCceeeeeCCCCccccCCCCCCCCCChhhH
Q 001708 397 LHGKFAIHPFNGRKIPIICDAILVDPKFGTGAVKITPAHDPNDFDVGKRHNLEFINIFTDDGKINSNGGLEFEGMPRFKA 476 (1022)
Q Consensus 397 L~G~~~~~P~~~~~~pIi~~~~~V~~~~GTG~V~~~PaH~~~Dy~~~~~~~L~~i~iid~~G~~~e~~g~~f~G~~~~~a 476 (1022)
+
T Consensus 207 ------------------------~------------------------------------------------------- 207 (616)
T PLN02224 207 ------------------------E------------------------------------------------------- 207 (616)
T ss_pred ------------------------C-------------------------------------------------------
Confidence 0
Q ss_pred HHHHHHHHHHcCCccccccccccccccccCCCceecccccccceechHHHHHHHHhhhccCCCceEEeccccHHHHHHHH
Q 001708 477 REAVNEALKKKGLYRGAKDNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKLELIPRQYTAEWRRWL 556 (1022)
Q Consensus 477 r~~vi~~L~~~gll~~~~~~~~~~p~c~Rs~~~i~~~~~~QWFi~~~~l~~~al~~v~~~~~~~i~~~P~~~~~~~~~wl 556 (1022)
-+.|..||.+++.+-+++||++++++++.+.+.+ ++..-.+.|+..++...+||
T Consensus 208 -----------------------~~~~~~~~~~~~~~~e~~~ff~Ls~~~~~L~~~~---~~~~~~~~p~~~~~~~~~~l 261 (616)
T PLN02224 208 -----------------------NNCCPVHQMPCVARKEDNYFFALSKYQKPLEDIL---AQNPRFVQPSYRLNEVQSWI 261 (616)
T ss_pred -----------------------CCCCCCCCCcceEEecceEEEEhHHHHHHHHHHH---HhCCCccCCHHHHHHHHHHH
Confidence 0235557888999999999999999999999998 43333467999999999999
Q ss_pred hh-ccCccceecc-CCCCccCcceeccCchhhhccCCCCcceEEecCHHHHHHHHhhhcCCCCcccccCCCcEEEEeccC
Q 001708 557 EA-IRDWCVSRQL-WWGHQIPAWYVTLEDDELKELGSYNDHWIVARDEKEALAVANKKFSGKKFEMCQDPDVLDTWFSSG 634 (1022)
Q Consensus 557 ~~-l~DWcISRQ~-~WG~pIP~~~~~~~~~~~~~~~~~~~~w~~~~~~~ea~~~~~~~~~~~~~~~~~d~DvlDtWFdSg 634 (1022)
++ ++||||||++ .||+|+|.. +..|++||||+.
T Consensus 262 ~~gL~d~~ISR~~~~WGIpvP~~---------------------------------------------~~~viYVWfDAl 296 (616)
T PLN02224 262 KSGLRDFSISRALVDWGIPVPDD---------------------------------------------DKQTIYVWFDAL 296 (616)
T ss_pred hcCCCCccccCCCCCCceECCCC---------------------------------------------CCcEEEEehhhH
Confidence 85 9999999986 799999931 237999999999
Q ss_pred ccccccccCCCCCh----hhhhcCCcCcccccccccch----HHHHHHHHHhhhcCCCCceEEEeccceeCCCCccceec
Q 001708 635 LFPLSVLGWPDDTD----DLKAFYPTSVLETGHDILFF----WVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKS 706 (1022)
Q Consensus 635 l~p~s~lg~p~~~~----d~~~~~P~dl~~~G~Dil~f----W~a~m~~~~~~l~~~~Pfk~V~~Hg~v~D~~GrKMSKS 706 (1022)
+.|++.++++.+.. .+..+||.++++.|+||++| |+++++++++ ..| +.|++||++ +.+|+|||||
T Consensus 297 ~~Yls~~~~~~~~~~~~~~~~~~w~~~v~~iGKDii~fH~i~wpa~l~~~g~----~~P-~~i~~~g~l-~~eG~KMSKS 370 (616)
T PLN02224 297 LGYISALTEDNKQQNLETAVSFGWPASLHLIGKDILRFHAVYWPAMLMSAGL----ELP-KMVFGHGFL-TKDGMKMGKS 370 (616)
T ss_pred HHHHHHhcccccccccchhhccCCCcceEEEeecccccHHHHHHHHHHHCCC----CCC-cEEEecccE-ecCCcccccc
Confidence 99999998765322 24558999999999999996 8886554332 335 999999997 5999999999
Q ss_pred CCcccCcchhhccccchhHHHhhhcCCCChHHHHHHHhcccCCCCCCCCCCCchHHHHHHHhccCCCcccccchhhhHH-
Q 001708 707 LGNVIDPLEVINGISLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLDIQRVVG- 785 (1022)
Q Consensus 707 lGNvIdP~dvI~g~~l~~l~~~l~~~nl~~~e~~~a~~~~~~~~~~~i~~~GaDaLR~~L~~~~~~~~Dinf~~~~~~~- 785 (1022)
+||+|+|.++++ +||+|++||||++.++.++|.+|+.+.+..
T Consensus 371 ~GN~i~p~e~l~-------------------------------------~ygaD~~R~yLl~~~p~~~d~~fs~~~~~~~ 413 (616)
T PLN02224 371 LGNTLEPFELVQ-------------------------------------KFGPDAVRYFFLREVEFGNDGDYSEDRFIKI 413 (616)
T ss_pred CCccCCHHHHHH-------------------------------------HcCcHHHHHHHHhcCCCcCCCCCCHHHHHHH
Confidence 999999999998 899999999999999999999999998643
Q ss_pred -HHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHhhhhHH
Q 001708 786 -YRQWCNKLWNAVRFSMSKLGEGFVPPLKLHPHNLPFSCKWILSVLNKAISRTASSLNSYEFSDAASTVYSWWQYQFCDV 864 (1022)
Q Consensus 786 -~r~f~nkl~N~~rf~l~~l~~~~~p~~~~~~~~~~~~D~wil~~L~~~~~~v~~a~e~~~f~~a~~~i~~f~~~~l~~~ 864 (1022)
...++|.++|.+.+++......+..... ........|+|++++++++++.+.++|++|+|++|++.+++| ...+|+
T Consensus 414 ~NseLan~lgNll~R~l~~~~k~~~~~~~-~~~~~~~~d~~l~~~l~~li~~v~~~me~~~~~~Al~~i~el--~~~~N~ 490 (616)
T PLN02224 414 VNAHLANTIGNLLNRTLGLLKKNCESTLV-EDSTVAAEGVPLKDTVEKLVEKAQTNYENLSLSSACEAVLEI--GNAGNT 490 (616)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcCC-CccccccccHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH--HHHHHH
Confidence 3459999999988776554332211100 001224558999999999999999999999999999999999 589999
Q ss_pred HHHhhcccc--cCCCcccHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHhCCC
Q 001708 865 FIEAIKPYF--AGDNPAFASERSAAQHVLWVCLETGLRLLHPFMPFVTEELWQRLPQ 919 (1022)
Q Consensus 865 Yle~~K~~l--~~~~~~~~~~r~~a~~~L~~~L~~~l~LL~PfmPfitEelwq~L~~ 919 (1022)
|++..+||. ..++.. ......+..+++.+|+.+++||+|||||+||+||++|+.
T Consensus 491 Yi~~~~PW~l~k~~~~~-~~~~~~~l~~l~e~lr~~a~LLaPf~P~~Ae~I~~~Lg~ 546 (616)
T PLN02224 491 YMDQRAPWFLFKQGGVS-AEEAAKDLVIILEVMRVIAVALSPIAPCLSLRIYSQLGY 546 (616)
T ss_pred HHHhCCchhhhcccccc-HHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHhCC
Confidence 999999993 222111 002345566888999999999999999999999999985
No 38
>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases. Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=100.00 E-value=2.7e-78 Score=685.26 Aligned_cols=338 Identities=34% Similarity=0.637 Sum_probs=311.0
Q ss_pred CcEEEECCCCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeeeeeccCCccChhHHHHHHHHHHHHhCCCccccChHHHHH
Q 001708 175 PSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVS 254 (1022)
Q Consensus 175 ~~f~i~~pPPy~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG~D~~Glp~q~~vEk~l~~~~~~~~~~~g~e~f~~ 254 (1022)
++|+|++|||||||.||||||++++++|+++||+||+|++|+|++||||||+|||.++++++.......+.++++++|.+
T Consensus 1 ~~f~i~~~pP~vnG~lHiGHa~~~~~~Dvl~Ry~r~~G~~V~~~~g~D~hG~~ie~ka~k~lg~~~~~~~~~~~~~~~~~ 80 (338)
T cd00818 1 PEFVFHDGPPYANGLPHYGHALNKILKDIINRYKTMQGYYVPRRPGWDCHGLPIELKVEKELGISGKKDIEKMGIAEFNA 80 (338)
T ss_pred CCeEEecCCCCCCCCchHHHHHHHHHHHHHHHHHHhcCCccCCcCCcCCCCchhHHHHHHHhCCCCCcchhhcCHHHHHH
Confidence 46999999999999999999999999999999999999999999999999999999999876332224557899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHHHcCcEEEcceeeeecCCCCcccccccccccc
Q 001708 255 EVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDLRLVNWDCVLRTAISDIEVDYVD 334 (1022)
Q Consensus 255 ~~~~~~~~~~~~i~~ql~rlG~s~DW~r~~~T~d~~~~~~v~~~F~~L~ekGlIyr~~~~V~W~p~~~TaLsd~EVe~~~ 334 (1022)
.|++|++++.+.+.++|++||++.||+++++|+++.|.+.|+++|.+|+++|+||++.++|+|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~lgi~~~~~~~~~T~~~~~~~~v~~~f~~L~~~G~iY~~~~~v~~----------------- 143 (338)
T cd00818 81 KCREFALRYVDEQEEQFQRLGVWVDWENPYKTMDPEYMESVWWVFKQLHEKGLLYRGYKVVPW----------------- 143 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHhCceecCCCCeECCCHHHHHHHHHHHHHHHHCCCEeccCCeeee-----------------
Confidence 999999999999999999999999999999999999999999999999999999999987766
Q ss_pred CCCceEEeecCccccccceeeEeEeeecCCCcceEEEeeccccccccCcEEEEcCCccccccccCCeeecCCCCCccceE
Q 001708 335 IPKREMRNVPGYEKQVEFGVLTSFAYPLEGGLGEIVVATTRVETMLGDTAIAIHPEDARYSHLHGKFAIHPFNGRKIPII 414 (1022)
Q Consensus 335 ~~~~t~~~vp~y~~~~e~g~l~~~~y~l~~~~~~l~v~TTrPeTl~g~~avaV~P~d~ry~~L~G~~~~~P~~~~~~pIi 414 (1022)
T Consensus 144 -------------------------------------------------------------------------------- 143 (338)
T cd00818 144 -------------------------------------------------------------------------------- 143 (338)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eCCccccCCCCCCceecCCCCCcchHHHHHHcCCceeeeeCCCCccccCCCCCCCCCChhhHHHHHHHHHHHcCCccccc
Q 001708 415 CDAILVDPKFGTGAVKITPAHDPNDFDVGKRHNLEFINIFTDDGKINSNGGLEFEGMPRFKAREAVNEALKKKGLYRGAK 494 (1022)
Q Consensus 415 ~~~~~V~~~~GTG~V~~~PaH~~~Dy~~~~~~~L~~i~iid~~G~~~e~~g~~f~G~~~~~ar~~vi~~L~~~gll~~~~ 494 (1022)
T Consensus 144 -------------------------------------------------------------------------------- 143 (338)
T cd00818 144 -------------------------------------------------------------------------------- 143 (338)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccccccCCCceecccccccceechHHHHHHHHhhhccCCCceEEeccccHHHHHHHHhhccCccceeccCCCCcc
Q 001708 495 DNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKLELIPRQYTAEWRRWLEAIRDWCVSRQLWWGHQI 574 (1022)
Q Consensus 495 ~~~~~~p~c~Rs~~~i~~~~~~QWFi~~~~l~~~al~~v~~~~~~~i~~~P~~~~~~~~~wl~~l~DWcISRQ~~WG~pI 574 (1022)
+++++.++|||++++++++++++.+ .+++|+|+..++++.+||++++|||||||++||+||
T Consensus 144 --------------~v~~~~~~qwf~~l~~~~~~l~~~~-----~~~~~~P~~~~~~~~~~l~~l~dw~iSR~~~WGip~ 204 (338)
T cd00818 144 --------------PLIYRATPQWFIRVTKIKDRLLEAN-----DKVNWIPEWVKNRFGNWLENRRDWCISRQRYWGTPI 204 (338)
T ss_pred --------------EEEEEecCeEEEEcHHHHHHHHHHH-----hcCcEECHHHHHHHHHHHhcchhcceeeecccCcee
Confidence 2235567899999999999999999 458899999999999999999999999999999999
Q ss_pred CcceeccCchhhhccCCCCcceEEecCHHHHHHHHhhhcCCCCcccccCCCcEEEEeccCccccccccCCCCChhhhhcC
Q 001708 575 PAWYVTLEDDELKELGSYNDHWIVARDEKEALAVANKKFSGKKFEMCQDPDVLDTWFSSGLFPLSVLGWPDDTDDLKAFY 654 (1022)
Q Consensus 575 P~~~~~~~~~~~~~~~~~~~~w~~~~~~~ea~~~~~~~~~~~~~~~~~d~DvlDtWFdSgl~p~s~lg~p~~~~d~~~~~ 654 (1022)
|+|+|..++ ... +.++++|+|||||||++|++.++||.++.+|++||
T Consensus 205 P~~~~~~~~-----------~~~----------------------~~~~~~v~~vWfda~~~~~~~~~~~~~~~~~~~~~ 251 (338)
T cd00818 205 PVWYCEDCG-----------EVL----------------------VRRVPDVLDVWFDSGSMPYAQLHYPFENEDFEELF 251 (338)
T ss_pred eEEEecCCC-----------eEE----------------------EecCCceEEEEEeCCCCHHHHcCCCCcchhhhccC
Confidence 999886542 111 14678999999999999999999998777899999
Q ss_pred CcCcccccccccchHHHHHHHHHhhhcCCCCceEEEeccceeCCCCccceecCCcccCcchhhccccchhHHHhhhcCCC
Q 001708 655 PTSVLETGHDILFFWVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLEGLHKRLEEGNL 734 (1022)
Q Consensus 655 P~dl~~~G~Dil~fW~a~m~~~~~~l~~~~Pfk~V~~Hg~v~D~~GrKMSKSlGNvIdP~dvI~g~~l~~l~~~l~~~nl 734 (1022)
|+|++++|+||+++|+.++++.++.+.+..||++|++||++++.+|+|||||+||+|+|.|+++
T Consensus 252 p~d~~~~GkDii~~wf~~~~~~~~~~~~~~p~~~~~~hg~~~~~~g~KmSKS~gn~i~~~~~~~---------------- 315 (338)
T cd00818 252 PADFILEGSDQTRGWFYSLLLLSTALFGKAPYKNVIVHGFVLDEDGRKMSKSLGNYVDPQEVVD---------------- 315 (338)
T ss_pred CCeEEeecchHHhHHHHHHHHHHHHhcCCCccceEEEEeeEECCCCCCCCCCCCCcCCHHHHHH----------------
Confidence 9999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ChHHHHHHHhcccCCCCCCCCCCCchHHHHHHHhccCCCccccc
Q 001708 735 DPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINL 778 (1022)
Q Consensus 735 ~~~e~~~a~~~~~~~~~~~i~~~GaDaLR~~L~~~~~~~~Dinf 778 (1022)
+||+|++||||++.++.++|++|
T Consensus 316 ---------------------~~~~D~~R~~l~~~~~~~~d~~~ 338 (338)
T cd00818 316 ---------------------KYGADALRLWVASSDVYAEDLRF 338 (338)
T ss_pred ---------------------HcCcHHHHHHHHhCCCccCCCCC
Confidence 89999999999999989999876
No 39
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.1e-76 Score=693.49 Aligned_cols=488 Identities=25% Similarity=0.381 Sum_probs=419.8
Q ss_pred CCcEEEECCCCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeeeeeccCCccChhHHHHHHHHHHHHhCCCccccChHHHH
Q 001708 174 KPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFV 253 (1022)
Q Consensus 174 k~~f~i~~pPPy~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG~D~~Glp~q~~vEk~l~~~~~~~~~~~g~e~f~ 253 (1022)
.++|+|++|+|||||.|||||+++++.+||++||+||+|+.|+|++|+|+||+|||..+++ +|++++
T Consensus 4 ~~~~~VTtalpY~Ng~~HlGH~~~~l~ADv~aRy~Rl~G~~v~fvtGtDeHGt~I~~~A~~-----~g~tP~-------- 70 (558)
T COG0143 4 MKKILVTTALPYPNGPPHLGHLYTYLAADVYARYLRLRGYEVFFLTGTDEHGTKIELKAEK-----EGITPQ-------- 70 (558)
T ss_pred CCcEEEecCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCCeEEEEeccCCCCCHHHHHHHH-----cCCCHH--------
Confidence 4689999999999999999999999999999999999999999999999999999998875 688875
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHHHcCcEEEcceeeeecCCCCccccccccccc
Q 001708 254 SEVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDLRLVNWDCVLRTAISDIEVDYV 333 (1022)
Q Consensus 254 ~~~~~~~~~~~~~i~~ql~rlG~s~DW~r~~~T~d~~~~~~v~~~F~~L~ekGlIyr~~~~V~W~p~~~TaLsd~EVe~~ 333 (1022)
+++++++..+++.++.|+|++| ++.+|.++.|.+.|+++|.+|+++|+||.+...+.||++|++.|.|.+|+.
T Consensus 71 ----el~d~~~~~~~~~~~~l~IsfD--~F~rTt~~~h~~~vq~~f~~L~~~G~I~~~~~~~~Yc~~~e~fl~dr~v~g- 143 (558)
T COG0143 71 ----ELVDKNHEEFKELFKALNISFD--NFIRTTSPEHKELVQEFFLKLYENGDIYLREYEGLYCVSCERFLPDRYVEG- 143 (558)
T ss_pred ----HHHHHHHHHHHHHHHHhCCccc--ccccCCCHHHHHHHHHHHHHHHHCCCEeccceeeeEcccccccccchheec-
Confidence 6789999999999999999999 888899999999999999999999999999999999999999999987752
Q ss_pred cCCCceEEeecCccccccceeeEeEeeecCCCcceEEEeeccccccccCcEEEEcCCccccccccCCeeecCCCCCccce
Q 001708 334 DIPKREMRNVPGYEKQVEFGVLTSFAYPLEGGLGEIVVATTRVETMLGDTAIAIHPEDARYSHLHGKFAIHPFNGRKIPI 413 (1022)
Q Consensus 334 ~~~~~t~~~vp~y~~~~e~g~l~~~~y~l~~~~~~l~v~TTrPeTl~g~~avaV~P~d~ry~~L~G~~~~~P~~~~~~pI 413 (1022)
.||.|+...
T Consensus 144 ---------------------------------------------------------------------~cp~cg~~~-- 152 (558)
T COG0143 144 ---------------------------------------------------------------------TCPKCGGED-- 152 (558)
T ss_pred ---------------------------------------------------------------------cCCCcCccc--
Confidence 255554210
Q ss_pred EeCCccccCCCCCCceecCCCCCcchHHHHHHcCCceeeeeCCCCccccCCCCCCCCCChhhHHHHHHHHHHHcCCcccc
Q 001708 414 ICDAILVDPKFGTGAVKITPAHDPNDFDVGKRHNLEFINIFTDDGKINSNGGLEFEGMPRFKAREAVNEALKKKGLYRGA 493 (1022)
Q Consensus 414 i~~~~~V~~~~GTG~V~~~PaH~~~Dy~~~~~~~L~~i~iid~~G~~~e~~g~~f~G~~~~~ar~~vi~~L~~~gll~~~ 493 (1022)
..|.-|++||. ..
T Consensus 153 ------------------------------------------arGD~Ce~Cg~-------------------------~~ 165 (558)
T COG0143 153 ------------------------------------------ARGDQCENCGR-------------------------TL 165 (558)
T ss_pred ------------------------------------------cCcchhhhccC-------------------------cC
Confidence 14556888982 22
Q ss_pred ccccccccccccCCCceecccccccceechHHHHHHHHhhhccCCCceEEeccccHHHHHHHHhh-ccCcccee-ccCCC
Q 001708 494 KDNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKLELIPRQYTAEWRRWLEA-IRDWCVSR-QLWWG 571 (1022)
Q Consensus 494 ~~~~~~~p~c~Rs~~~i~~~~~~QWFi~~~~l~~~al~~v~~~~~~~i~~~P~~~~~~~~~wl~~-l~DWcISR-Q~~WG 571 (1022)
.+....-|+|++||...|.+.+++||++++++.+.+++.+ +++.-.+.|.+.++.+.+||++ ++|||||| ...||
T Consensus 166 ~P~~l~~p~~~i~g~~p~~r~~~hyFf~L~~~~~~L~~~~---~~~~~~~~p~~~~ne~~~~i~~GL~d~~IsR~~~~WG 242 (558)
T COG0143 166 DPTELINPVCVISGATPEVREEEHYFFRLSKFQDKLLEWY---ESNPDFIWPANRRNEVLNFLKEGLKDLSITRTDLDWG 242 (558)
T ss_pred CchhcCCCeeEeeCCCcccccceeEEEEHHHhHHHHHHHH---HhCccccCChHHHHHHHHHHHccCcccceecCCCCCC
Confidence 4445567999999999999999999999999999999999 6665678999999999999975 99999999 89999
Q ss_pred CccCcceeccCchhhhccCCCCcceEEecCHHHHHHHHhhhcCCCCcccccCCCcEEEEeccCccccccccCCC---CCh
Q 001708 572 HQIPAWYVTLEDDELKELGSYNDHWIVARDEKEALAVANKKFSGKKFEMCQDPDVLDTWFSSGLFPLSVLGWPD---DTD 648 (1022)
Q Consensus 572 ~pIP~~~~~~~~~~~~~~~~~~~~w~~~~~~~ea~~~~~~~~~~~~~~~~~d~DvlDtWFdSgl~p~s~lg~p~---~~~ 648 (1022)
+|+|- . ...|++||||+.+.|++.++... +..
T Consensus 243 ipvP~----~-----------------------------------------p~kv~YVWfDAligYisa~~~~~~~~~~~ 277 (558)
T COG0143 243 IPVPG----D-----------------------------------------PGKVIYVWFDALIGYISALGELAEIGDDE 277 (558)
T ss_pred ccCCC----C-----------------------------------------CCCEEEEeeccHHHHHHHhcchhccCChH
Confidence 99992 0 23799999999999999998763 557
Q ss_pred hhhhcCCcC----cccccccccch----HHHHHHHHHhhhcCCCCceEEEeccceeCCCCccceecCCcccCcchhhccc
Q 001708 649 DLKAFYPTS----VLETGHDILFF----WVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGI 720 (1022)
Q Consensus 649 d~~~~~P~d----l~~~G~Dil~f----W~a~m~~~~~~l~~~~Pfk~V~~Hg~v~D~~GrKMSKSlGNvIdP~dvI~g~ 720 (1022)
+|++|||.+ +++.|+||++| |+++++..+.. +| +.|+.||++. .+|+|||||+||||+|.++++
T Consensus 278 ~~~~~W~~~~~e~vhfIGKDii~FHav~wPamL~~~~~~----lP-~~i~ahg~l~-~~G~KmSKSrG~~V~~~~~~~-- 349 (558)
T COG0143 278 DFKKFWPADDTELVHFIGKDIIRFHAVYWPAMLMAAGLP----LP-TRIFAHGFLT-LEGQKMSKSRGNVVDPDELLE-- 349 (558)
T ss_pred HHHhhCCCCCceEEEEeccccCcchhhHHHHHHHhCCCC----CC-CEEEeeeeEE-ECCccccccCCcEEeHHHHHH--
Confidence 899999999 99999999985 88887766655 46 9999999998 899999999999999999998
Q ss_pred cchhHHHhhhcCCCChHHHHHHHhcccCCCCCCCCCCCchHHHHHHHhccCCCcccccchhhhHHHH--HHHHHHHHHHH
Q 001708 721 SLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLDIQRVVGYR--QWCNKLWNAVR 798 (1022)
Q Consensus 721 ~l~~l~~~l~~~nl~~~e~~~a~~~~~~~~~~~i~~~GaDaLR~~L~~~~~~~~Dinf~~~~~~~~r--~f~nkl~N~~r 798 (1022)
+||+|+|||||+...+.++|.+|+++.+.... .+.|++.|.+.
T Consensus 350 -----------------------------------~~~~D~lRYyL~~~~p~~~D~dFs~~~f~~rvN~dL~n~lgNl~~ 394 (558)
T COG0143 350 -----------------------------------QYGVDALRYYLARELPEGSDGDFSWEDFVERVNADLANKLGNLAN 394 (558)
T ss_pred -----------------------------------HcCchHhHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999987643 48999999998
Q ss_pred HHHhhcCCCCC---CCCCCCCCCCChhhHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHhhhhHHHHHhhcccccC
Q 001708 799 FSMSKLGEGFV---PPLKLHPHNLPFSCKWILSVLNKAISRTASSLNSYEFSDAASTVYSWWQYQFCDVFIEAIKPYFAG 875 (1022)
Q Consensus 799 f~l~~l~~~~~---p~~~~~~~~~~~~D~wil~~L~~~~~~v~~a~e~~~f~~a~~~i~~f~~~~l~~~Yle~~K~~l~~ 875 (1022)
.+++.+...|. |... . ... ..|+.++.+...+...+.++|++++|++|+..++++ ...+|.||+..+||...
T Consensus 395 R~~~fi~k~~~g~vp~~~-~-~~~-~~d~~~~~~~~~~~~~~~~~~e~~~~~~Al~~i~~l--~~~~N~Yi~~~~PW~l~ 469 (558)
T COG0143 395 RTLGFINKYFDGVVPAAG-A-PDL-EEDEELLALAREALEAVAEAMEKYEFRKALEEIMAL--ASRANKYIDEQAPWKLA 469 (558)
T ss_pred HHHHHHHhccCCcCCccc-c-ccc-hhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH--HHHHHHHhhcCCCchhh
Confidence 88876544443 2211 1 123 688999999999999999999999999999999999 58999999999999433
Q ss_pred CCcccHHHHHHHHHHH---HHHHHHHHHHHhchhhHHHHHHHHhCCC
Q 001708 876 DNPAFASERSAAQHVL---WVCLETGLRLLHPFMPFVTEELWQRLPQ 919 (1022)
Q Consensus 876 ~~~~~~~~r~~a~~~L---~~~L~~~l~LL~PfmPfitEelwq~L~~ 919 (1022)
.+. .+..+.++| .++++.+..||+||||.++++||+.|+.
T Consensus 470 k~~----~~~~~~~vl~~~~~~~r~la~ll~P~mP~~a~ki~~~L~~ 512 (558)
T COG0143 470 KED----KRERLATVLYLALELVRVLAILLYPFMPETAEKIWDQLGL 512 (558)
T ss_pred ccC----cHHHHHHHHHHHHHHHHHHHHHhcCcCcchHHHHHHHhCC
Confidence 221 233344444 4556677889999999999999999986
No 40
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.
Probab=100.00 E-value=1.1e-67 Score=593.70 Aligned_cols=312 Identities=39% Similarity=0.704 Sum_probs=288.9
Q ss_pred cEEEECCCCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeeeeeccCCccChhHHHHHHHHHHHHhCCCccccChHHHHHH
Q 001708 176 SFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSE 255 (1022)
Q Consensus 176 ~f~i~~pPPy~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG~D~~Glp~q~~vEk~l~~~~~~~~~~~g~e~f~~~ 255 (1022)
+|+|++|||||||.||||||++++++|+++||+||+|++|+|++||||||+||+.++|+++ +.......+++|.+.
T Consensus 1 ~~~i~~~pP~~~g~~HiGH~~~~i~~D~i~R~~r~~G~~v~~~~g~D~~g~~i~~~a~~~~----~~~~~~~~~~~~~~~ 76 (312)
T cd00668 1 KFYVTTPPPYANGSLHLGHALTHIIADFIARYKRMRGYEVPFLPGWDTHGLPIELKAERKG----GRKKKTIWIEEFRED 76 (312)
T ss_pred CEEEecCCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCCCCCccCCCCHHHHHHHHHhc----CcccccccHHHHHHH
Confidence 5999999999999999999999999999999999999999999999999999999998764 333344458999999
Q ss_pred HHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHHHcCcEEEcceeeeecCCCCccccccccccccC
Q 001708 256 VWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDLRLVNWDCVLRTAISDIEVDYVDI 335 (1022)
Q Consensus 256 ~~~~~~~~~~~i~~ql~rlG~s~DW~r~~~T~d~~~~~~v~~~F~~L~ekGlIyr~~~~V~W~p~~~TaLsd~EVe~~~~ 335 (1022)
|++|++++.+.|+++|++||+++||++.|.|+++.|.+.|+++|.+|+++|+||++.++|
T Consensus 77 ~~~~~~~~~~~~~~~l~~lgI~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~G~iY~~~~~v-------------------- 136 (312)
T cd00668 77 PKEFVEEMSGEHKEDFRRLGISYDWSDEYITTEPEYSKAVELIFSRLYEKGLIYRGTHPV-------------------- 136 (312)
T ss_pred HHHHHHHHHHHHHHHHHHhCccccCCCCeECCCHHHHHHHHHHHHHHHHCCCEEeeccee--------------------
Confidence 999999999999999999999999999999999999999999999999999999987432
Q ss_pred CCceEEeecCccccccceeeEeEeeecCCCcceEEEeeccccccccCcEEEEcCCccccccccCCeeecCCCCCccceEe
Q 001708 336 PKREMRNVPGYEKQVEFGVLTSFAYPLEGGLGEIVVATTRVETMLGDTAIAIHPEDARYSHLHGKFAIHPFNGRKIPIIC 415 (1022)
Q Consensus 336 ~~~t~~~vp~y~~~~e~g~l~~~~y~l~~~~~~l~v~TTrPeTl~g~~avaV~P~d~ry~~L~G~~~~~P~~~~~~pIi~ 415 (1022)
T Consensus 137 -------------------------------------------------------------------------------- 136 (312)
T cd00668 137 -------------------------------------------------------------------------------- 136 (312)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccccCCCCCCceecCCCCCcchHHHHHHcCCceeeeeCCCCccccCCCCCCCCCChhhHHHHHHHHHHHcCCcccccc
Q 001708 416 DAILVDPKFGTGAVKITPAHDPNDFDVGKRHNLEFINIFTDDGKINSNGGLEFEGMPRFKAREAVNEALKKKGLYRGAKD 495 (1022)
Q Consensus 416 ~~~~V~~~~GTG~V~~~PaH~~~Dy~~~~~~~L~~i~iid~~G~~~e~~g~~f~G~~~~~ar~~vi~~L~~~gll~~~~~ 495 (1022)
T Consensus 137 -------------------------------------------------------------------------------- 136 (312)
T cd00668 137 -------------------------------------------------------------------------------- 136 (312)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccccCCCceecccccccceechHHHHHHHHhhhccCCCceEEeccccHHHHHHHHhhccCccceeccCCCCccC
Q 001708 496 NEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKLELIPRQYTAEWRRWLEAIRDWCVSRQLWWGHQIP 575 (1022)
Q Consensus 496 ~~~~~p~c~Rs~~~i~~~~~~QWFi~~~~l~~~al~~v~~~~~~~i~~~P~~~~~~~~~wl~~l~DWcISRQ~~WG~pIP 575 (1022)
+..+|||++++++++++++.+ + +..+.|+..++++.+||++..|||||||++||+|+|
T Consensus 137 -----------------~~~~~~f~~~~~l~~~~~~~~---~--~~~~~p~~~~~~~~~~l~~~~d~~isR~~~WG~~~P 194 (312)
T cd00668 137 -----------------RITEQWFFDMPKFKEKLLKAL---R--RGKIVPEHVKNRMEAWLESLLDWAISRQRYWGTPLP 194 (312)
T ss_pred -----------------EeeeeEEEEcHHHHHHHHHHH---h--cCCcCChHHHHHHHHHHhCCCCeEEeccCCCCCcCC
Confidence 224589999999999999998 4 345899999999999999988999999999999999
Q ss_pred cceeccCchhhhccCCCCcceEEecCHHHHHHHHhhhcCCCCcccccCCCcEEEEeccCccccccccCCCCChhhhhcCC
Q 001708 576 AWYVTLEDDELKELGSYNDHWIVARDEKEALAVANKKFSGKKFEMCQDPDVLDTWFSSGLFPLSVLGWPDDTDDLKAFYP 655 (1022)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~ea~~~~~~~~~~~~~~~~~d~DvlDtWFdSgl~p~s~lg~p~~~~d~~~~~P 655 (1022)
- +|+||||||+++|+++++|+.++.+|+++||
T Consensus 195 ~------------------------------------------------~~i~~Wfds~~~~~~~~~~~~~~~~~~~~~~ 226 (312)
T cd00668 195 E------------------------------------------------DVFDVWFDSGIGPLGSLGYPEEKEWFKDSYP 226 (312)
T ss_pred c------------------------------------------------ccccchhhccHHHHHHcCCCccchhhhhcCC
Confidence 1 6899999999999999999987778999999
Q ss_pred cCcccccccccchHHHHHHHHHhhhcCCCCceEEEeccceeCCCCccceecCCcccCcchhhccccchhHHHhhhcCCCC
Q 001708 656 TSVLETGHDILFFWVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLEGLHKRLEEGNLD 735 (1022)
Q Consensus 656 ~dl~~~G~Dil~fW~a~m~~~~~~l~~~~Pfk~V~~Hg~v~D~~GrKMSKSlGNvIdP~dvI~g~~l~~l~~~l~~~nl~ 735 (1022)
.|++++|+||+|+|+.++++++.++.+..||+++++||+|++.+|+|||||+||+|+|.|+++
T Consensus 227 ~di~~~G~D~~~~h~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~KmSKS~gn~v~~~d~~~----------------- 289 (312)
T cd00668 227 ADWHLIGKDILRGWANFWITMLVALFGEIPPKNLLVHGFVLDEGGQKMSKSKGNVIDPSDVVE----------------- 289 (312)
T ss_pred ceEEEEecchhhhHHHHHHHHHHHhcCCCCcceeEECcEEEcCCCccccccCCCcCCHHHHHH-----------------
Confidence 999999999999999999999999988888999999999998888999999999999999998
Q ss_pred hHHHHHHHhcccCCCCCCCCCCCchHHHHHHHhccCCCccccc
Q 001708 736 PKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINL 778 (1022)
Q Consensus 736 ~~e~~~a~~~~~~~~~~~i~~~GaDaLR~~L~~~~~~~~Dinf 778 (1022)
+||+|++||||++..+.++|++|
T Consensus 290 --------------------~~~~da~R~~l~~~~~~~~d~~~ 312 (312)
T cd00668 290 --------------------KYGADALRYYLTSLAPYGDDIRL 312 (312)
T ss_pred --------------------HcCcHHHHHHHHhcCCccCCCCC
Confidence 89999999999999988899876
No 41
>KOG0436 consensus Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.2e-63 Score=536.62 Aligned_cols=471 Identities=23% Similarity=0.343 Sum_probs=388.7
Q ss_pred CCcEEEECCCCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeeeeeccCCccChhHHHHHHHHHHHHhCCCccccChHHHH
Q 001708 174 KPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFV 253 (1022)
Q Consensus 174 k~~f~i~~pPPy~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG~D~~Glp~q~~vEk~l~~~~~~~~~~~g~e~f~ 253 (1022)
.+.|++++|.-|||..+||||+++.++.|+|+||+|++|..|.|..|+|+||+.||.+++. .|.+|.
T Consensus 38 ~~~~~lTTPifYvNAaPHlGhlYS~llaDai~R~q~lkg~~v~fsTGTDEHGlKIqtaaat-----nG~~P~-------- 104 (578)
T KOG0436|consen 38 GETFVLTTPIFYVNAAPHLGHLYSTLLADAIARFQRLKGKKVIFSTGTDEHGLKIQTAAAT-----NGRNPP-------- 104 (578)
T ss_pred CceeEEecceeecCCCcchhHHHHHHHHHHHHHHHhhcCCceEeecCCCccchhhhhhHhh-----cCCChH--------
Confidence 3589999999999999999999999999999999999999999999999999999999874 577664
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHHHcCcEEEcceeeeecCCCCccccccccccc
Q 001708 254 SEVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDLRLVNWDCVLRTAISDIEVDYV 333 (1022)
Q Consensus 254 ~~~~~~~~~~~~~i~~ql~rlG~s~DW~r~~~T~d~~~~~~v~~~F~~L~ekGlIyr~~~~V~W~p~~~TaLsd~EVe~~ 333 (1022)
+.++...+.+.+.++..|++++ ++.+|+||.|.+.|++.+.++.++|+||++.+..+||.+|+|+..+.+|...
T Consensus 105 ----e~cDr~s~~f~qL~k~~gi~yt--~FIRTTdpkH~a~Vqefw~~~~knG~iy~g~~eGwYcvsdEtf~pEskv~k~ 178 (578)
T KOG0436|consen 105 ----ELCDRISQSFRQLWKDAGIAYT--KFIRTTDPKHEAIVQEFWARVFKNGDIYRGDYEGWYCVSDETFYPESKVLKN 178 (578)
T ss_pred ----HHHhhhhHHHHHHHHHhCcchh--heeecCCchHHHHHHHHHHHHHhCCceeeecccceEeccccccCCHHHHhcC
Confidence 5577777888888999999998 8999999999999999999999999999999999999999999988776321
Q ss_pred cCCCceEEeecCccccccceeeEeEeeecCCCcceEEEeeccccccccCcEEEEcCCccccccccCCeeecCCCCCccce
Q 001708 334 DIPKREMRNVPGYEKQVEFGVLTSFAYPLEGGLGEIVVATTRVETMLGDTAIAIHPEDARYSHLHGKFAIHPFNGRKIPI 413 (1022)
Q Consensus 334 ~~~~~t~~~vp~y~~~~e~g~l~~~~y~l~~~~~~l~v~TTrPeTl~g~~avaV~P~d~ry~~L~G~~~~~P~~~~~~pI 413 (1022)
|-+..
T Consensus 179 -----------------------------------------------------------------------p~~~g---- 183 (578)
T KOG0436|consen 179 -----------------------------------------------------------------------PCPPG---- 183 (578)
T ss_pred -----------------------------------------------------------------------CCCCC----
Confidence 00000
Q ss_pred EeCCccccCCCCCCceecCCCCCcchHHHHHHcCCceeeeeCCCCccccCCCCCCCCCChhhHHHHHHHHHHHcCCcccc
Q 001708 414 ICDAILVDPKFGTGAVKITPAHDPNDFDVGKRHNLEFINIFTDDGKINSNGGLEFEGMPRFKAREAVNEALKKKGLYRGA 493 (1022)
Q Consensus 414 i~~~~~V~~~~GTG~V~~~PaH~~~Dy~~~~~~~L~~i~iid~~G~~~e~~g~~f~G~~~~~ar~~vi~~L~~~gll~~~ 493 (1022)
..|.|+
T Consensus 184 ----k~vsmE---------------------------------------------------------------------- 189 (578)
T KOG0436|consen 184 ----KVVSME---------------------------------------------------------------------- 189 (578)
T ss_pred ----ceeeec----------------------------------------------------------------------
Confidence 012332
Q ss_pred ccccccccccccCCCceecccccccceechHHHHHHHHhhhccCCCceEEeccccHHHHHHHHh-hccCcccee--c-cC
Q 001708 494 KDNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKLELIPRQYTAEWRRWLE-AIRDWCVSR--Q-LW 569 (1022)
Q Consensus 494 ~~~~~~~p~c~Rs~~~i~~~~~~QWFi~~~~l~~~al~~v~~~~~~~i~~~P~~~~~~~~~wl~-~l~DWcISR--Q-~~ 569 (1022)
||.+|...-.+.+|++++++.+.+.+.+ +.+---+.|+...+....||+ +++|..||| + +.
T Consensus 190 ------------sg~~vv~~kE~NY~FrLSkfqk~l~d~l---rkNP~fvqPs~~~~qVl~~lktglpDlSISRpsarl~ 254 (578)
T KOG0436|consen 190 ------------SGNPVVWRKEDNYFFRLSKFQKPLEDHL---RKNPRFVQPSYFHNQVLSWLKTGLPDLSISRPSARLD 254 (578)
T ss_pred ------------cCCceeEecccceeeeHHhhhhHHHHHH---hcCCCccCchHHHHHHHHHHHcCCCcccccChhhhcc
Confidence 4556666677899999999999999998 655555778888999999997 699999999 4 79
Q ss_pred CCCccCcceeccCchhhhccCCCCcceEEecCHHHHHHHHhhhcCCCCcccccCCCcEEEEeccCccccccccCCCC---
Q 001708 570 WGHQIPAWYVTLEDDELKELGSYNDHWIVARDEKEALAVANKKFSGKKFEMCQDPDVLDTWFSSGLFPLSVLGWPDD--- 646 (1022)
Q Consensus 570 WG~pIP~~~~~~~~~~~~~~~~~~~~w~~~~~~~ea~~~~~~~~~~~~~~~~~d~DvlDtWFdSgl~p~s~lg~p~~--- 646 (1022)
||+|+|. .+.++++||||+.+.|++++|+|.+
T Consensus 255 WGIPvP~---------------------------------------------ddsQtIYVWfDAL~nYiSvig~~~~~~N 289 (578)
T KOG0436|consen 255 WGIPVPG---------------------------------------------DDSQTIYVWFDALLNYISVIGYPNKQQN 289 (578)
T ss_pred cCCCCCC---------------------------------------------CCcceEEEeHHHHhhHHHhhcCCchhcc
Confidence 9999992 1447999999999999999999963
Q ss_pred -ChhhhhcCCcCcccccccccch----HHHHHHHHHhhhcCCCCceEEEeccceeCCCCccceecCCcccCcchhhcccc
Q 001708 647 -TDDLKAFYPTSVLETGHDILFF----WVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGIS 721 (1022)
Q Consensus 647 -~~d~~~~~P~dl~~~G~Dil~f----W~a~m~~~~~~l~~~~Pfk~V~~Hg~v~D~~GrKMSKSlGNvIdP~dvI~g~~ 721 (1022)
...+..+||++++++|+||++| |++++|..|+.+ | +.|++||++. .+|.|||||+||||||.++++
T Consensus 290 ~k~~ls~~wPat~HvIGKDIlrFHavYWPafLmaAGlpl----P-~~I~vHghwt-~ngmKMsKSLGNvvdP~~l~~--- 360 (578)
T KOG0436|consen 290 LKTALSFGWPATLHVIGKDILRFHAVYWPAFLMAAGLPL----P-KMIFVHGHWT-KNGMKMSKSLGNVVDPFELVQ--- 360 (578)
T ss_pred ccceeecCCCceeeehhhhhhhhhhhhhHHHHHhcCCCC----c-cEEEEeeeee-ecceecchhhccccCHHHHHH---
Confidence 3457779999999999999996 999998887753 5 9999999997 999999999999999999998
Q ss_pred chhHHHhhhcCCCChHHHHHHHhcccCCCCCCCCCCCchHHHHHHHhccCCCcccccchhhhHHHH--HHHHHHHHHHHH
Q 001708 722 LEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLDIQRVVGYR--QWCNKLWNAVRF 799 (1022)
Q Consensus 722 l~~l~~~l~~~nl~~~e~~~a~~~~~~~~~~~i~~~GaDaLR~~L~~~~~~~~Dinf~~~~~~~~r--~f~nkl~N~~rf 799 (1022)
+||+|++||+|+..+..+.|.+|+++.+...+ .+.++|.|++..
T Consensus 361 ----------------------------------kygvD~vRyflLr~~~l~~Dgdy~eekl~k~~n~~La~~lG~LlnR 406 (578)
T KOG0436|consen 361 ----------------------------------KYGVDAVRYFLLREGELGNDGDYSEEKLIKIVNAHLANTLGNLLNR 406 (578)
T ss_pred ----------------------------------HhCccceeeEeeeccccCCCCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999987655 488999999988
Q ss_pred HHhhcCCCCCCCC-----CCCCCCCChhhHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHhhhhHHHHHhhccccc
Q 001708 800 SMSKLGEGFVPPL-----KLHPHNLPFSCKWILSVLNKAISRTASSLNSYEFSDAASTVYSWWQYQFCDVFIEAIKPYFA 874 (1022)
Q Consensus 800 ~l~~l~~~~~p~~-----~~~~~~~~~~D~wil~~L~~~~~~v~~a~e~~~f~~a~~~i~~f~~~~l~~~Yle~~K~~l~ 874 (1022)
+++.- +++.. ..+.......+.-+.+.++.+.+.+.+.|+++.+..|++++.+. ..-.|.|++..+||..
T Consensus 407 c~gkk---ln~sn~e~~l~~~s~~v~ae~~~lv~~v~kl~ev~a~~~d~f~~~~ale~V~si--~n~~ntlvq~~aPWkl 481 (578)
T KOG0436|consen 407 CLGKK---LNISNCESTLVVDSPTVAAEGEPLVDTVEKLPEVAATNYDNFSLYSALEAVLSI--GNAGNTLVQQRAPWKL 481 (578)
T ss_pred Hhhcc---cChhccccccccCCcchhhccchHHHHHHHhHHHHHhhcccccHHHHHHHHHHH--HHhhhhhhhhcCCcee
Confidence 77631 22211 00000112233457889999999999999999999999999987 4668999999999944
Q ss_pred CC-CcccHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHhCCCC
Q 001708 875 GD-NPAFASERSAAQHVLWVCLETGLRLLHPFMPFVTEELWQRLPQP 920 (1022)
Q Consensus 875 ~~-~~~~~~~r~~a~~~L~~~L~~~l~LL~PfmPfitEelwq~L~~~ 920 (1022)
.. .......-.....++.+||+++..||+|+||.++.+++.+|+-.
T Consensus 482 ~~dsq~~~~~la~~~~~~le~lrv~~illqpv~Psls~~llsqlgvs 528 (578)
T KOG0436|consen 482 FKDSQVSAEELAKVLHIILEVLRVIGILLQPVAPSLSLRLLSQLGVS 528 (578)
T ss_pred ccccCccHHHHHHHHHHHHHHHHHHHHHHccccchhHHHHHHHcCCC
Confidence 33 22211112223345667888889999999999999999999864
No 42
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....
Probab=100.00 E-value=6.6e-62 Score=559.67 Aligned_cols=375 Identities=26% Similarity=0.431 Sum_probs=297.9
Q ss_pred EEEECCCCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeeeeeccCCccChhHHHHHHHHHHHHhCCCccccChHHHHHHH
Q 001708 177 FVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEV 256 (1022)
Q Consensus 177 f~i~~pPPy~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG~D~~Glp~q~~vEk~l~~~~~~~~~~~g~e~f~~~~ 256 (1022)
|+|++|+|||||.|||||+.+++.+|+++||+||+|++|+|+.|+|+||++|+.++++ .|+++.
T Consensus 1 ~~ITt~~pY~Ng~lHlGH~~~~l~ADv~aR~~r~~G~~v~~~tGtDehG~~i~~~A~~-----~g~~p~----------- 64 (391)
T PF09334_consen 1 FYITTPIPYPNGDLHLGHLYPYLAADVLARYLRLRGHDVLFVTGTDEHGSKIETAAEK-----QGIDPE----------- 64 (391)
T ss_dssp EEEEEEEEETSSS-BHHHHHHHHHHHHHHHHHHHTT-EEEEEEEEE-SSHHHHHHHHH-----TTS-HH-----------
T ss_pred CEEecCCCCCCCCCCCChhHHHHHHHHHHHHHhhcccceeeEEecchhhHHHHHHHHH-----cCCCHH-----------
Confidence 7899999999999999999999999999999999999999999999999999988875 577664
Q ss_pred HHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHHHcCcEEEcceeeeecCCCCccccccccccccCC
Q 001708 257 WKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDLRLVNWDCVLRTAISDIEVDYVDIP 336 (1022)
Q Consensus 257 ~~~~~~~~~~i~~ql~rlG~s~DW~r~~~T~d~~~~~~v~~~F~~L~ekGlIyr~~~~V~W~p~~~TaLsd~EVe~~~~~ 336 (1022)
++++++++.+++.|++|||++| ++..|.|+.|.++|+++|.+|+++|+||++...++||+.|++.|+|.+|+.
T Consensus 65 -~~~~~~~~~~~~~~~~~~I~~D--~F~rTt~~~h~~~v~~i~~~L~~~G~I~~~~~~~~Yc~~~e~fl~e~~v~g---- 137 (391)
T PF09334_consen 65 -EFCDKYSAKFKELLEALNISYD--RFIRTTDDRHKEFVQEIFKRLYDNGYIYKREYEGWYCPSCERFLPESFVEG---- 137 (391)
T ss_dssp -HHHHHHHHHHHHHHHHTT---S--EEEETTSHHHHHHHHHHHHHHHHTTSEEEEEEEEEEETTTTEEE-GGGETC----
T ss_pred -HHHHHHHHHHHHHHHHcCCCCc--ceeCCCCHHHHHHHHHHHHHHHhcCceeecccceeEecCcCcccccceeec----
Confidence 7899999999999999999999 777899999999999999999999999999999999999999999987752
Q ss_pred CceEEeecCccccccceeeEeEeeecCCCcceEEEeeccccccccCcEEEEcCCccccccccCCeeecCCCCCccceEeC
Q 001708 337 KREMRNVPGYEKQVEFGVLTSFAYPLEGGLGEIVVATTRVETMLGDTAIAIHPEDARYSHLHGKFAIHPFNGRKIPIICD 416 (1022)
Q Consensus 337 ~~t~~~vp~y~~~~e~g~l~~~~y~l~~~~~~l~v~TTrPeTl~g~~avaV~P~d~ry~~L~G~~~~~P~~~~~~pIi~~ 416 (1022)
.||.|+..
T Consensus 138 ------------------------------------------------------------------~CP~C~~~------ 145 (391)
T PF09334_consen 138 ------------------------------------------------------------------TCPYCGSD------ 145 (391)
T ss_dssp ------------------------------------------------------------------EETTT--S------
T ss_pred ------------------------------------------------------------------cccCcCcc------
Confidence 25665411
Q ss_pred CccccCCCCCCceecCCCCCcchHHHHHHcCCceeeeeCCCCccccCCCCCCCCCChhhHHHHHHHHHHHcCCccccccc
Q 001708 417 AILVDPKFGTGAVKITPAHDPNDFDVGKRHNLEFINIFTDDGKINSNGGLEFEGMPRFKAREAVNEALKKKGLYRGAKDN 496 (1022)
Q Consensus 417 ~~~V~~~~GTG~V~~~PaH~~~Dy~~~~~~~L~~i~iid~~G~~~e~~g~~f~G~~~~~ar~~vi~~L~~~gll~~~~~~ 496 (1022)
. ..|..|++||. ..++.
T Consensus 146 ~--------------------------------------a~g~~Ce~cG~-------------------------~~~~~ 162 (391)
T PF09334_consen 146 K--------------------------------------ARGDQCENCGR-------------------------PLEPE 162 (391)
T ss_dssp S--------------------------------------CTTTEETTTSS-------------------------BEECC
T ss_pred c--------------------------------------cCCCcccCCCC-------------------------Ccccc
Confidence 0 25667888982 23455
Q ss_pred cccccccccCCCceecccccccceechHHHHHHHHhhhccCCCceEEeccccHHHHHHHHhh-ccCccceeccCCCCccC
Q 001708 497 EMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKLELIPRQYTAEWRRWLEA-IRDWCVSRQLWWGHQIP 575 (1022)
Q Consensus 497 ~~~~p~c~Rs~~~i~~~~~~QWFi~~~~l~~~al~~v~~~~~~~i~~~P~~~~~~~~~wl~~-l~DWcISRQ~~WG~pIP 575 (1022)
+..-|+|..||.+++.+..+|||++++++++.+.+.+ ++... +.|+..++...+||++ ++||||||...||+|+|
T Consensus 163 ~l~~p~~~~~g~~~~~r~e~~~ff~L~~~~~~L~~~l---~~~~~-~~~~~~~~~~~~~l~~~L~d~~Is~~~~WGI~vP 238 (391)
T PF09334_consen 163 ELINPVCKICGSPPEVREEENYFFKLSKFRDQLREWL---ESNPD-FPPPRVREIVRNWLKEGLPDLSISRPLDWGIPVP 238 (391)
T ss_dssp CSECEEETTTS-B-EEEEEEEEEE-GGGGHHHHHHHH---HHSTT-SSHHHHHHHHHHHHHT----EE-ECTTSSSEEET
T ss_pred cccCCccccccccCccccceEEEEehHHhHHHHHHHH---hcCCC-CCChhHHHHHHHHhhcccCceeeecCCCCcceee
Confidence 6778999999999999999999999999999999988 42221 2677778888899976 99999999999999999
Q ss_pred cceeccCchhhhccCCCCcceEEecCHHHHHHHHhhhcCCCCcccccCCCcEEEEeccCccccccccCCC----CChhhh
Q 001708 576 AWYVTLEDDELKELGSYNDHWIVARDEKEALAVANKKFSGKKFEMCQDPDVLDTWFSSGLFPLSVLGWPD----DTDDLK 651 (1022)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~ea~~~~~~~~~~~~~~~~~d~DvlDtWFdSgl~p~s~lg~p~----~~~d~~ 651 (1022)
. + +..|++||||+.+.|++.++++. +..+++
T Consensus 239 ~------~---------------------------------------~~~~iyVWfdal~~Ylt~~~~~~~~~~~~~~~~ 273 (391)
T PF09334_consen 239 G------D---------------------------------------PGQVIYVWFDALIGYLTATGYLAEKRGDPEEFK 273 (391)
T ss_dssp T------E---------------------------------------EEEEE-HHHHHHTHHHHTTTTTHHHTTTSHHHH
T ss_pred c------c---------------------------------------CCceEEEcchHHHHHHHHhccccccccccchhh
Confidence 2 0 23699999999999999998875 456788
Q ss_pred hcCC-----cCcccccccccch----HHHHHHHHHhhhcCCCCceEEEeccceeCCCCccceecCCcccCcchhhccccc
Q 001708 652 AFYP-----TSVLETGHDILFF----WVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISL 722 (1022)
Q Consensus 652 ~~~P-----~dl~~~G~Dil~f----W~a~m~~~~~~l~~~~Pfk~V~~Hg~v~D~~GrKMSKSlGNvIdP~dvI~g~~l 722 (1022)
.+|+ ..+++.|+||++| |++.+++.++ .+| +.+++|||++ .+|+|||||+||+|+|.|+++
T Consensus 274 ~~w~~~~~~~~v~~iGkDi~~fH~i~~pa~l~a~~~----~lP-~~i~~~~~~~-~~g~K~SkS~gn~i~~~~~~~---- 343 (391)
T PF09334_consen 274 KWWANDSDVEIVHFIGKDIIRFHAIYWPAMLLAAGL----PLP-RRIVVHGFLT-LDGEKMSKSRGNVIWPDDLLE---- 343 (391)
T ss_dssp HHHCST--SEEEEEEEGGGHHHHHTHHHHHHHHCTB--------SEEEEE--EE-ETTCCEETTTTESSBHHHHHH----
T ss_pred hhccccCCceEEEEEccchhHHHHHHhHHHHhcccC----CCC-CEEEeeeeEE-ECCeeccccCCcccCHHHHHH----
Confidence 8882 2389999999987 6665554332 345 9999999998 899999999999999999999
Q ss_pred hhHHHhhhcCCCChHHHHHHHhcccCCCCCCCCCCCchHHHHHHHhccCCCcccccchhhhHHH-H-HHHHHHHHHHHHH
Q 001708 723 EGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLDIQRVVGY-R-QWCNKLWNAVRFS 800 (1022)
Q Consensus 723 ~~l~~~l~~~nl~~~e~~~a~~~~~~~~~~~i~~~GaDaLR~~L~~~~~~~~Dinf~~~~~~~~-r-~f~nkl~N~~rf~ 800 (1022)
+||+|++||||++.++.++|.+|+++.+... + .+.|++.|++.++
T Consensus 344 ---------------------------------~~~~D~~R~~L~~~~~~~~d~~F~~~~~~~~~n~~L~~~~gNl~~R~ 390 (391)
T PF09334_consen 344 ---------------------------------EYGADALRYYLAREGPEGQDSDFSWEDFIERVNNELANTLGNLVNRV 390 (391)
T ss_dssp ---------------------------------HH-HHHHHHHHHHHSSTTS-EEE-HHHHHHHHHHCCCCCHHHHHHHH
T ss_pred ---------------------------------hCChHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHhhhhHHhcc
Confidence 8999999999999999999999999987653 3 3677788887665
Q ss_pred H
Q 001708 801 M 801 (1022)
Q Consensus 801 l 801 (1022)
+
T Consensus 391 ~ 391 (391)
T PF09334_consen 391 L 391 (391)
T ss_dssp H
T ss_pred C
Confidence 3
No 43
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases. Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.
Probab=100.00 E-value=5.7e-60 Score=532.52 Aligned_cols=309 Identities=26% Similarity=0.412 Sum_probs=273.1
Q ss_pred cEEEECCCCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeeeeeccCCccChhHHHHHHHHHHHHhCCCccccChHHHHHH
Q 001708 176 SFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSE 255 (1022)
Q Consensus 176 ~f~i~~pPPy~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG~D~~Glp~q~~vEk~l~~~~~~~~~~~g~e~f~~~ 255 (1022)
+|+|++|||||||.|||||+++++++|+++||+||+|++|+|++|+|+||+||+..+++ .|+++
T Consensus 1 ~~~it~~~Py~ng~~HlGH~~~~~~~Dv~~R~~r~~G~~V~~~~g~Dd~g~~i~~~a~~-----~g~~~----------- 64 (319)
T cd00814 1 KVLITTALPYVNGVPHLGHLYGTVLADVFARYQRLRGYDVLFVTGTDEHGTKIEQKAEE-----EGVTP----------- 64 (319)
T ss_pred CEEEEeCCCCCCCCcchhhHHHHHHHHHHHHHHHhCCCcccccCccCCCCcHHHHHHHH-----cCCCH-----------
Confidence 58999999999999999999999999999999999999999999999999999888864 46654
Q ss_pred HHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHHHcCcEEEcceeeeecCCCCccccccccccccC
Q 001708 256 VWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDLRLVNWDCVLRTAISDIEVDYVDI 335 (1022)
Q Consensus 256 ~~~~~~~~~~~i~~ql~rlG~s~DW~r~~~T~d~~~~~~v~~~F~~L~ekGlIyr~~~~V~W~p~~~TaLsd~EVe~~~~ 335 (1022)
.++++.+.+.|++++++||+++| ..++|+++.|...|+++|.+|+++|+||++...++|||.|+++|+
T Consensus 65 -~e~~~~~~~~~~~~l~~LgI~~D--~~~~tt~~~~~~~v~~i~~~L~ekG~iY~~~~~~~yc~~~~~~l~--------- 132 (319)
T cd00814 65 -QELCDKYHEIFKDLFKWLNISFD--YFIRTTSPRHKEIVQEFFKKLYENGYIYEGEYEGLYCVSCERFLP--------- 132 (319)
T ss_pred -HHHHHHHHHHHHHHHHHcCCcCC--CCeeCCCHHHHHHHHHHHHHHHHCCCEEeeeeeeeECCCCCcEee---------
Confidence 37789999999999999999877 677899999999999999999999999999999999999987664
Q ss_pred CCceEEeecCccccccceeeEeEeeecCCCcceEEEeeccccccccCcEEEEcCCccccccccCCeeecCCCCCccceEe
Q 001708 336 PKREMRNVPGYEKQVEFGVLTSFAYPLEGGLGEIVVATTRVETMLGDTAIAIHPEDARYSHLHGKFAIHPFNGRKIPIIC 415 (1022)
Q Consensus 336 ~~~t~~~vp~y~~~~e~g~l~~~~y~l~~~~~~l~v~TTrPeTl~g~~avaV~P~d~ry~~L~G~~~~~P~~~~~~pIi~ 415 (1022)
T Consensus 133 -------------------------------------------------------------------------------- 132 (319)
T cd00814 133 -------------------------------------------------------------------------------- 132 (319)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccccCCCCCCceecCCCCCcchHHHHHHcCCceeeeeCCCCccccCCCCCCCCCChhhHHHHHHHHHHHcCCcccccc
Q 001708 416 DAILVDPKFGTGAVKITPAHDPNDFDVGKRHNLEFINIFTDDGKINSNGGLEFEGMPRFKAREAVNEALKKKGLYRGAKD 495 (1022)
Q Consensus 416 ~~~~V~~~~GTG~V~~~PaH~~~Dy~~~~~~~L~~i~iid~~G~~~e~~g~~f~G~~~~~ar~~vi~~L~~~gll~~~~~ 495 (1022)
T Consensus 133 -------------------------------------------------------------------------------- 132 (319)
T cd00814 133 -------------------------------------------------------------------------------- 132 (319)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccccCCCceecccccccceechHHHHHHHHhhhccCCCceEEeccccHHHHHHHHhh-ccCccceecc-CCCCc
Q 001708 496 NEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKLELIPRQYTAEWRRWLEA-IRDWCVSRQL-WWGHQ 573 (1022)
Q Consensus 496 ~~~~~p~c~Rs~~~i~~~~~~QWFi~~~~l~~~al~~v~~~~~~~i~~~P~~~~~~~~~wl~~-l~DWcISRQ~-~WG~p 573 (1022)
+++.++|||++++++++.+++.+ +++...+.|+..++.+.+||++ ++|||||||+ +||+|
T Consensus 133 ---------------e~~~~~~~ff~l~~~~~~l~~~~---~~~~~~~~p~~~~~~~~~~l~~~l~d~~isR~~~~WGip 194 (319)
T cd00814 133 ---------------EWREEEHYFFRLSKFQDRLLEWL---EKNPDFIWPENARNEVLSWLKEGLKDLSITRDLFDWGIP 194 (319)
T ss_pred ---------------EEEeeeeEEEEhHHHHHHHHHHH---HhCCccCCCHHHHHHHHHHHhCCCcccCCCccCcccCee
Confidence 12334689999999999999998 6555568899999999999996 9999999999 99999
Q ss_pred cCcceeccCchhhhccCCCCcceEEecCHHHHHHHHhhhcCCCCcccccCCCcEEEEeccCccccccccCCCCCh----h
Q 001708 574 IPAWYVTLEDDELKELGSYNDHWIVARDEKEALAVANKKFSGKKFEMCQDPDVLDTWFSSGLFPLSVLGWPDDTD----D 649 (1022)
Q Consensus 574 IP~~~~~~~~~~~~~~~~~~~~w~~~~~~~ea~~~~~~~~~~~~~~~~~d~DvlDtWFdSgl~p~s~lg~p~~~~----d 649 (1022)
+|.. +.+|++|||||.+.|++.++++.+.. .
T Consensus 195 vp~~---------------------------------------------~~~~~yvWfda~~~y~~~~~~~~~~~~~~~~ 229 (319)
T cd00814 195 VPLD---------------------------------------------PGKVIYVWFDALIGYISATGYYNEEWGNSWW 229 (319)
T ss_pred CCCC---------------------------------------------CCcEEEEehhhHHHHHHHcccccccccchhh
Confidence 9941 23799999999999999999876432 4
Q ss_pred hhhcCCcCcccccccccch----HHHHHHHHHhhhcCCCCceEEEeccceeCCCCccceecCCcccCcchhhccccchhH
Q 001708 650 LKAFYPTSVLETGHDILFF----WVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLEGL 725 (1022)
Q Consensus 650 ~~~~~P~dl~~~G~Dil~f----W~a~m~~~~~~l~~~~Pfk~V~~Hg~v~D~~GrKMSKSlGNvIdP~dvI~g~~l~~l 725 (1022)
+...+|.++++.|+||++| |++.++. .|..|++.+++||+++ .+|+|||||+||+|+|.++++
T Consensus 230 ~~~~~~~~v~~~G~D~~~fh~~~~pa~l~~-----~~~~~~~~~~~~~~~~-~~g~kmSkS~gn~i~~~~~l~------- 296 (319)
T cd00814 230 WKDGWPELVHFIGKDIIRFHAIYWPAMLLG-----AGLPLPTRIVAHGYLT-VEGKKMSKSRGNVVDPDDLLE------- 296 (319)
T ss_pred hhcCCCceEEEEeechhhhhHHHHHHHHHh-----CCCCCCcEeeeeeeEE-ECCeeecccCCcccCHHHHHH-------
Confidence 5667899999999999997 5553322 2355679999999998 569999999999999999998
Q ss_pred HHhhhcCCCChHHHHHHHhcccCCCCCCCCCCCchHHHHHHHhccCCCccccc
Q 001708 726 HKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINL 778 (1022)
Q Consensus 726 ~~~l~~~nl~~~e~~~a~~~~~~~~~~~i~~~GaDaLR~~L~~~~~~~~Dinf 778 (1022)
.||+|++||+|++.++.++|.||
T Consensus 297 ------------------------------~~~~d~~R~~l~~~~~~~~d~~f 319 (319)
T cd00814 297 ------------------------------RYGADALRYYLLRERPEGKDSDF 319 (319)
T ss_pred ------------------------------HcCchHHHHHHHhcCCCCCCCCC
Confidence 89999999999999999999987
No 44
>cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases. Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=100.00 E-value=8.9e-56 Score=497.05 Aligned_cols=296 Identities=29% Similarity=0.484 Sum_probs=255.7
Q ss_pred cEEEECCCCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeeeeeccCCccChhHHHHHHHHHHHHhCCCccccChHHHHHH
Q 001708 176 SFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSE 255 (1022)
Q Consensus 176 ~f~i~~pPPy~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG~D~~Glp~q~~vEk~l~~~~~~~~~~~g~e~f~~~ 255 (1022)
+|+|++|||||||.+||||+++++++|+++||+||+|++|++++|+|+||+|++..+++ .|.+
T Consensus 1 k~~it~~~Py~ng~~HiGH~~~~v~~Dv~~R~lr~~G~~V~~v~g~Dd~g~~i~~~a~~-----~g~~------------ 63 (314)
T cd00812 1 KFYILVMFPYPSGALHVGHVRTYTIGDIIARYKRMQGYNVLFPMGFDAFGLPAENAAIK-----IGRD------------ 63 (314)
T ss_pred CeEEecCCCCCCCCccccchHHHHHHHHHHHHHHHcCCCcCCCCCcCCCCCHHHHHHHH-----cCCC------------
Confidence 59999999999999999999999999999999999999999999999999999887764 3543
Q ss_pred HHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHHHcCcEEEcceeeeecCCCCccccccccccccC
Q 001708 256 VWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDLRLVNWDCVLRTAISDIEVDYVDI 335 (1022)
Q Consensus 256 ~~~~~~~~~~~i~~ql~rlG~s~DW~r~~~T~d~~~~~~v~~~F~~L~ekGlIyr~~~~V~W~p~~~TaLsd~EVe~~~~ 335 (1022)
|.+|++++.+.++++|++||+++||.+.+.|++|.|.+.|+++|.+|+++|+||++..+|+||
T Consensus 64 ~~e~~~~~~~~~~~~~~~lgi~~d~~~~~~t~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~----------------- 126 (314)
T cd00812 64 PEDWTEYNIKKMKEQLKRMGFSYDWRREFTTCDPEYYKFTQWLFLKLYEKGLAYKKEAPVNWC----------------- 126 (314)
T ss_pred HHHHHHHHHHHHHHHHHHhccceecccccccCCHHHHHHHHHHHHHHHHCCCEEecCceeeee-----------------
Confidence 579999999999999999999999999999999999999999999999999999999888888
Q ss_pred CCceEEeecCccccccceeeEeEeeecCCCcceEEEeeccccccccCcEEEEcCCccccccccCCeeecCCCCCccceEe
Q 001708 336 PKREMRNVPGYEKQVEFGVLTSFAYPLEGGLGEIVVATTRVETMLGDTAIAIHPEDARYSHLHGKFAIHPFNGRKIPIIC 415 (1022)
Q Consensus 336 ~~~t~~~vp~y~~~~e~g~l~~~~y~l~~~~~~l~v~TTrPeTl~g~~avaV~P~d~ry~~L~G~~~~~P~~~~~~pIi~ 415 (1022)
T Consensus 127 -------------------------------------------------------------------------------- 126 (314)
T cd00812 127 -------------------------------------------------------------------------------- 126 (314)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccccCCCCCCceecCCCCCcchHHHHHHcCCceeeeeCCCCccccCCCCCCCCCChhhHHHHHHHHHHHcCCcccccc
Q 001708 416 DAILVDPKFGTGAVKITPAHDPNDFDVGKRHNLEFINIFTDDGKINSNGGLEFEGMPRFKAREAVNEALKKKGLYRGAKD 495 (1022)
Q Consensus 416 ~~~~V~~~~GTG~V~~~PaH~~~Dy~~~~~~~L~~i~iid~~G~~~e~~g~~f~G~~~~~ar~~vi~~L~~~gll~~~~~ 495 (1022)
T Consensus 127 -------------------------------------------------------------------------------- 126 (314)
T cd00812 127 -------------------------------------------------------------------------------- 126 (314)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccccCCCceecccccccceec--hHHHHHHHHhhhccCCCceEEeccccHHHHHHHHhhccCccceeccCCCCc
Q 001708 496 NEMRLGLCSRSNDVVEPMIKPQWYVNC--NSMAMEALYAVMDDDKKKLELIPRQYTAEWRRWLEAIRDWCVSRQLWWGHQ 573 (1022)
Q Consensus 496 ~~~~~p~c~Rs~~~i~~~~~~QWFi~~--~~l~~~al~~v~~~~~~~i~~~P~~~~~~~~~wl~~l~DWcISRQ~~WG~p 573 (1022)
+.++|||+++ +++++++.+.+ + ++.+.|+..++.+.+||+ ||||+.||+|
T Consensus 127 -----------------~~~~~~f~~l~~~~~~~~l~~~l---~--~~~~~p~~~~~~~~~~l~------isR~~~wGip 178 (314)
T cd00812 127 -----------------KLLDQWFLKYSETEWKEKLLKDL---E--KLDGWPEEVRAMQENWIG------CSRQRYWGTP 178 (314)
T ss_pred -----------------CccceEEEEcCcHHHHHHHHHHH---H--hcCcCCHHHHHHHHHHhe------eeeecCCcCC
Confidence 1135899999 99999999998 4 345799999999999997 9999999999
Q ss_pred cCcceeccCchhhhccCCCCcceEEecCHHHHHHHHhhhcCCCCcccccCCCcEEEEeccCccccccc---cCCC-----
Q 001708 574 IPAWYVTLEDDELKELGSYNDHWIVARDEKEALAVANKKFSGKKFEMCQDPDVLDTWFSSGLFPLSVL---GWPD----- 645 (1022)
Q Consensus 574 IP~~~~~~~~~~~~~~~~~~~~w~~~~~~~ea~~~~~~~~~~~~~~~~~d~DvlDtWFdSgl~p~s~l---g~p~----- 645 (1022)
+|+ .+|+||||||.++++..+ ....
T Consensus 179 vP~-----------------------------------------------~~~i~~w~ds~~y~~~y~~~~~~~~~~~~~ 211 (314)
T cd00812 179 IPW-----------------------------------------------TDTMESLSDSTWYYARYTDAHNLEQPYEGD 211 (314)
T ss_pred cCc-----------------------------------------------ccccccccccHHHHHHHHhcccccCcchhh
Confidence 993 168999999998543332 2111
Q ss_pred ---CChhhhhcCCcCcccccccccchHHHHHHHHHhhh--cC---CCCceEEEeccceeCCCCccceecCCcccCcchhh
Q 001708 646 ---DTDDLKAFYPTSVLETGHDILFFWVARMVMLGIKL--GG---EVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVI 717 (1022)
Q Consensus 646 ---~~~d~~~~~P~dl~~~G~Dil~fW~a~m~~~~~~l--~~---~~Pfk~V~~Hg~v~D~~GrKMSKSlGNvIdP~dvI 717 (1022)
..++|++|||.|++++|+||++||...+++....+ .| ..|++++++||+|. .+|+|||||+||+|+|.|++
T Consensus 212 ~~~~~~~~~~w~p~di~v~G~D~i~~h~~~~~~~~~~l~~~g~~~~~~~~~~~~~g~v~-~~g~KmSkS~Gn~v~~~dll 290 (314)
T cd00812 212 LEFDREEFEYWYPVDIYIGGKEHAPNHLLYSRFNHKALFDEGLVTDEPPKGLIVQGMVL-LEGEKMSKSKGNVVTPDEAI 290 (314)
T ss_pred hhhhHHHHHHhCCCeeeecchhHHHHHHHHHHHHHHHHcCcccccccCcHHheecceEe-cCccccCCcCCCCCCHHHHH
Confidence 23468999999999999999998864444443333 23 24679999999998 68999999999999999999
Q ss_pred ccccchhHHHhhhcCCCChHHHHHHHhcccCCCCCCCCCCCchHHHHHHHhccCCCcccccch
Q 001708 718 NGISLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLDI 780 (1022)
Q Consensus 718 ~g~~l~~l~~~l~~~nl~~~e~~~a~~~~~~~~~~~i~~~GaDaLR~~L~~~~~~~~Dinf~~ 780 (1022)
+ ++|+|++||+|++.++ .|++|++
T Consensus 291 ~-------------------------------------~~~~Da~R~~ll~~~~--~~~~f~~ 314 (314)
T cd00812 291 K-------------------------------------KYGADAARLYILFAAP--PDADFDW 314 (314)
T ss_pred H-------------------------------------HhCcHHHHHHHHhcCC--cCCCCCC
Confidence 9 8999999999998776 6888874
No 45
>KOG1247 consensus Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2e-43 Score=384.37 Aligned_cols=491 Identities=18% Similarity=0.250 Sum_probs=373.6
Q ss_pred CCCcEEEECCCCCCCCCCCcchhHH-HHHHHHHHHHHHhCCCeeeeeccCCccChhHHHHHHHHHHHHhCCCccccChHH
Q 001708 173 SKPSFVIVLPPPNVTGALHIGHALT-TAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQ 251 (1022)
Q Consensus 173 ~k~~f~i~~pPPy~nG~LHiGHal~-~~i~Dii~Ry~rm~G~~Vl~~pG~D~~Glp~q~~vEk~l~~~~~~~~~~~g~e~ 251 (1022)
++..-+|+..-||+|..+|+|+... ...+|+++||.+.+|++.+|++|+|+.|.+++..+- ++|.+|+
T Consensus 12 n~rnilitsalpyvnnvphlgNIIg~vlsAdV~Aryc~~r~~~~~yicGTDEYgtatetkal-----eeg~tP~------ 80 (567)
T KOG1247|consen 12 NERNILITSALPYVNNVPHLGNIIGSVLSADVFARYCPLRGPNTLYICGTDEYGTATETKAL-----EEGLTPQ------ 80 (567)
T ss_pred CccceeeecccceecccccccceeeEEeehhhhcccccCCCCceEEeccccccchhhHHHHH-----HccCCHH------
Confidence 4557889999999999999999886 555999999999999999999999999999877653 4788886
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHHHcCcEEEcceeeeecCCCCccccccccc
Q 001708 252 FVSEVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDLRLVNWDCVLRTAISDIEVD 331 (1022)
Q Consensus 252 f~~~~~~~~~~~~~~i~~ql~rlG~s~DW~r~~~T~d~~~~~~v~~~F~~L~ekGlIyr~~~~V~W~p~~~TaLsd~EVe 331 (1022)
+.+++|+...+....-++|++| ..-+|+.+...+.+|.+|.+|+++|++-...--+.+|..|++.|+|..|+
T Consensus 81 ------elcdKyh~ihk~vy~Wf~IdfD--~fgrtTT~~qT~i~Q~iF~kl~~ng~~se~tv~qLyC~vc~~fladr~ve 152 (567)
T KOG1247|consen 81 ------ELCDKYHGIHKVVYDWFKIDFD--EFGRTTTKTQTEICQDIFSKLYDNGYLSEQTVKQLYCEVCDTFLADRFVE 152 (567)
T ss_pred ------HHHHhcchhHHHHHHhhccccc--ccCcccCcchhHHHHHHhhchhhcCCcccceeeeEEehhhcccccchhhh
Confidence 5588999999999999998888 55568889999999999999999999999999999999999999997664
Q ss_pred cccCCCceEEeecCccccccceeeEeEeeecCCCcceEEEeeccccccccCcEEEEcCCccccccccCCeeecCCCCCcc
Q 001708 332 YVDIPKREMRNVPGYEKQVEFGVLTSFAYPLEGGLGEIVVATTRVETMLGDTAIAIHPEDARYSHLHGKFAIHPFNGRKI 411 (1022)
Q Consensus 332 ~~~~~~~t~~~vp~y~~~~e~g~l~~~~y~l~~~~~~l~v~TTrPeTl~g~~avaV~P~d~ry~~L~G~~~~~P~~~~~~ 411 (1022)
. .+|+|+..
T Consensus 153 g----------------------------------------------------------------------~cp~C~yd- 161 (567)
T KOG1247|consen 153 G----------------------------------------------------------------------KCPFCGYD- 161 (567)
T ss_pred c----------------------------------------------------------------------cCCCCCCc-
Confidence 2 26666521
Q ss_pred ceEeCCccccCCCCCCceecCCCCCcchHHHHHHcCCceeeeeCCCCccccCCCCCCCCCChhhHHHHHHHHHHHcCCcc
Q 001708 412 PIICDAILVDPKFGTGAVKITPAHDPNDFDVGKRHNLEFINIFTDDGKINSNGGLEFEGMPRFKAREAVNEALKKKGLYR 491 (1022)
Q Consensus 412 pIi~~~~~V~~~~GTG~V~~~PaH~~~Dy~~~~~~~L~~i~iid~~G~~~e~~g~~f~G~~~~~ar~~vi~~L~~~gll~ 491 (1022)
|..|..|++||. . +
T Consensus 162 -------------------------------------------~ARGDqcd~cG~-l------------~---------- 175 (567)
T KOG1247|consen 162 -------------------------------------------DARGDQCDKCGK-L------------V---------- 175 (567)
T ss_pred -------------------------------------------cccchhhhhhhh-h------------c----------
Confidence 126777888881 1 1
Q ss_pred ccccccccccccccCCCceecccccccceechHHHHHHHHhhhccCCC-ceEEeccccHHHHHHHHh-hccCccceeccC
Q 001708 492 GAKDNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKK-KLELIPRQYTAEWRRWLE-AIRDWCVSRQLW 569 (1022)
Q Consensus 492 ~~~~~~~~~p~c~Rs~~~i~~~~~~QWFi~~~~l~~~al~~v~~~~~~-~i~~~P~~~~~~~~~wl~-~l~DWcISRQ~~ 569 (1022)
...+...|.|.-|..-.+++-+.+-|++++++++++-+.+. ++. +-.| ..+.++....||. +++..||||.+-
T Consensus 176 --N~~el~~pkc~ic~~~p~~~~t~h~Fl~L~kl~~~lee~~~--~~~~~~~W-S~Na~~it~sWlk~gl~pRCiTRDLk 250 (567)
T KOG1247|consen 176 --NAAELKIPKCKICQAGPVVRQTQHLFLSLDKLEPRLEEWLR--RTLVEGDW-SQNAQNITRSWLKDGLKPRCITRDLK 250 (567)
T ss_pred --CHHHhcCcchheeccCCeeeeeeEEEEEhHHhHHHHHHHHH--hccccCCC-ccchHHHHHHHHHccccccccccccc
Confidence 11234468899888888899999999999999999888871 111 1123 4466788999995 799999999999
Q ss_pred CCCccCcceeccCchhhhccCCCCcceEEecCHHHHHHHHhhhcCCCCcccccCCCcEEEEeccCccccccccCCCCChh
Q 001708 570 WGHQIPAWYVTLEDDELKELGSYNDHWIVARDEKEALAVANKKFSGKKFEMCQDPDVLDTWFSSGLFPLSVLGWPDDTDD 649 (1022)
Q Consensus 570 WG~pIP~~~~~~~~~~~~~~~~~~~~w~~~~~~~ea~~~~~~~~~~~~~~~~~d~DvlDtWFdSgl~p~s~lg~p~~~~d 649 (1022)
||+|+|. + +| ...|++||||+-+.|+|.+. .-+++
T Consensus 251 WGtpVPl-----e-----------------------------~f---------k~KVfYVWFDA~IGYlsit~--~yt~e 285 (567)
T KOG1247|consen 251 WGTPVPL-----E-----------------------------KF---------KDKVFYVWFDAPIGYLSITK--NYTDE 285 (567)
T ss_pred cCCCcCh-----h-----------------------------hh---------cccEEEEEEcCcceEEEeeh--hhhHH
Confidence 9999994 0 11 23799999999999988764 22478
Q ss_pred hhhcCCcC-----cccccccccchHHHHHHHHHhhhcCCCCc-eEEEeccceeCCCCccceecCCcccCcchhhccccch
Q 001708 650 LKAFYPTS-----VLETGHDILFFWVARMVMLGIKLGGEVPF-TKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLE 723 (1022)
Q Consensus 650 ~~~~~P~d-----l~~~G~Dil~fW~a~m~~~~~~l~~~~Pf-k~V~~Hg~v~D~~GrKMSKSlGNvIdP~dvI~g~~l~ 723 (1022)
|++||-.- +.+.|+|..-|+-..+-.+-+....+-+- +++.+.-.+ .-+..|+|||+|-+|-..++.++
T Consensus 286 w~kWwknpE~v~LyqFmgKDNVpFHtviFP~s~lgt~en~t~v~~l~aTeYL-nyE~gKFSKSrgvGvFG~~aqd~---- 360 (567)
T KOG1247|consen 286 WEKWWKNPENVELYQFMGKDNVPFHTVIFPCSQLGTEENYTVVHHLSATEYL-NYEDGKFSKSRGVGVFGNDAQDT---- 360 (567)
T ss_pred HHHHhcCHhhhhHHHHhccCCCcceeeecchhhhcCCCCchhheeechhhhh-ccccCcccccccccccccccccC----
Confidence 88888432 45678888766433222211111122221 222222222 34567999999999999888774
Q ss_pred hHHHhhhcCCCChHHHHHHHhcccCCCCCCCCCCCchHHHHHHHhccCCCcccccchhhhHH--HHHHHHHHHHHHHHHH
Q 001708 724 GLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLDIQRVVG--YRQWCNKLWNAVRFSM 801 (1022)
Q Consensus 724 ~l~~~l~~~nl~~~e~~~a~~~~~~~~~~~i~~~GaDaLR~~L~~~~~~~~Dinf~~~~~~~--~r~f~nkl~N~~rf~l 801 (1022)
..++|+.||||++..+.++|.+|+++++.. ...++|.|.|++..++
T Consensus 361 --------------------------------gi~~~vWRyYLl~~RPEssDs~Fsw~df~~k~nseLl~NLGNFvNR~l 408 (567)
T KOG1247|consen 361 --------------------------------GIPASVWRYYLLYIRPESSDSAFSWDDFVLKVNSELLNNLGNFVNRVL 408 (567)
T ss_pred --------------------------------CCCHHHHHHHHhhccCcccCCcCcHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 567999999999999999999999998754 4558888888887766
Q ss_pred hhcCCC---CCCCCCCCCCCCChhhHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHhhhhHHHHHhhccc-ccCCC
Q 001708 802 SKLGEG---FVPPLKLHPHNLPFSCKWILSVLNKAISRTASSLNSYEFSDAASTVYSWWQYQFCDVFIEAIKPY-FAGDN 877 (1022)
Q Consensus 802 ~~l~~~---~~p~~~~~~~~~~~~D~wil~~L~~~~~~v~~a~e~~~f~~a~~~i~~f~~~~l~~~Yle~~K~~-l~~~~ 877 (1022)
...... ..|.. .+..-|+-++..++.+..+..++||.-..++|++.+++. ....|.||+..+.+ ++..
T Consensus 409 ~fv~~~~~g~Vp~~-----~~~~~~~~~~~dv~~~~~~y~~~me~vklr~~l~~~m~i--s~~GNqylQ~~~~~k~~~~- 480 (567)
T KOG1247|consen 409 KFVAAKYNGVVPEM-----ELTSGDKKLLEDVNELLAKYVAAMEKVKLREALKTAMEI--SRRGNQYLQENTDNKLYEE- 480 (567)
T ss_pred HHHHHhhCCcccce-----eecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhhHHHhcccccchhhh-
Confidence 654433 33322 334448889999999999999999999999999999997 78899999988754 2221
Q ss_pred cccHHHHHHHHH---HHHHHHHHHHHHHhchhhHHHHHHHHhCCC
Q 001708 878 PAFASERSAAQH---VLWVCLETGLRLLHPFMPFVTEELWQRLPQ 919 (1022)
Q Consensus 878 ~~~~~~r~~a~~---~L~~~L~~~l~LL~PfmPfitEelwq~L~~ 919 (1022)
.|..+.. +-..++-.+..||+||||-++.+|...|.-
T Consensus 481 -----~r~r~~~vi~~a~nii~lvs~ll~P~mP~~s~~I~kqlnl 520 (567)
T KOG1247|consen 481 -----SRQRAGTVIGLAANIIYLVSVLLYPYMPTTSAEILKQLNL 520 (567)
T ss_pred -----cccccceeeehhhHHHHHHHHHhccccccchHHHHHHhCC
Confidence 2222222 223344456779999999999999998864
No 46
>PRK00260 cysS cysteinyl-tRNA synthetase; Validated
Probab=100.00 E-value=4.2e-41 Score=395.85 Aligned_cols=359 Identities=21% Similarity=0.317 Sum_probs=272.0
Q ss_pred cccCCCCCCCcEEEECCCCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeeeeeccCCccChhHHHHHHHHHHHHhCCCcc
Q 001708 166 FIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRH 245 (1022)
Q Consensus 166 f~~~~~~~k~~f~i~~pPPy~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG~D~~Glp~q~~vEk~l~~~~~~~~~ 245 (1022)
|+|.. .++.+++++.| +|+|.+|||||+++++.|+++||+||+||+|+|+.|+|.+|.+|...++ +.|.+
T Consensus 16 f~p~~-~~~v~~yvcgP--tvy~~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~tD~ddki~~~A~-----~~g~~-- 85 (463)
T PRK00260 16 FKPLE-PGKVKMYVCGP--TVYDYAHIGHARSFVVFDVLRRYLRYLGYKVTYVRNITDIDDKIIKRAN-----EEGES-- 85 (463)
T ss_pred cccCC-CCcceEEEeCC--ccCCCcccccchhHHHHHHHHHHHHhcCCceEEeecCCCCcHHHHHHHH-----HcCCC--
Confidence 44433 24456776664 4569999999999999999999999999999999999999999866554 34654
Q ss_pred ccChHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccccCCccccCChhhHHHHHHHHHHHHHcCcEEEcceeeeecCCCCcc
Q 001708 246 DIGREQFVSEVWKWKDEYGGTILRQQRRLGA-SLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDLRLVNWDCVLRTA 324 (1022)
Q Consensus 246 ~~g~e~f~~~~~~~~~~~~~~i~~ql~rlG~-s~DW~r~~~T~d~~~~~~v~~~F~~L~ekGlIyr~~~~V~W~p~~~Ta 324 (1022)
|+++++++.+.+.++|++||+ +.||... .| .|...+++++.+|+++|++|++..+|+||+..-.
T Consensus 86 ----------~~e~~~~~~~~f~~~~~~Lgi~~~d~~~r-~t---~~~~~~~~~i~~L~~kG~aY~~~~~Vyfdv~~~~- 150 (463)
T PRK00260 86 ----------IKELTERYIAAFHEDMDALNVLPPDIEPR-AT---EHIPEIIELIERLIDKGHAYEADGDVYFDVRKFP- 150 (463)
T ss_pred ----------HHHHHHHHHHHHHHHHHHcCCCCCCcccc-cc---ccHHHHHHHHHHHHHCCCEEEecCeEEEeccccc-
Confidence 458899999999999999999 5676432 22 4888899999999999999999999999986421
Q ss_pred ccccccccccCCCceEEeecCccccccceeeEeEeeecCCCcceEEEeeccccccccCcEEEEcCCccccccccCCeeec
Q 001708 325 ISDIEVDYVDIPKREMRNVPGYEKQVEFGVLTSFAYPLEGGLGEIVVATTRVETMLGDTAIAIHPEDARYSHLHGKFAIH 404 (1022)
Q Consensus 325 Lsd~EVe~~~~~~~t~~~vp~y~~~~e~g~l~~~~y~l~~~~~~l~v~TTrPeTl~g~~avaV~P~d~ry~~L~G~~~~~ 404 (1022)
+| |. |.|.....
T Consensus 151 ------~y--------------------g~------------------------------------------ls~~~~~~ 162 (463)
T PRK00260 151 ------DY--------------------GK------------------------------------------LSGRNLDE 162 (463)
T ss_pred ------cc--------------------cc------------------------------------------CCCCCHHH
Confidence 01 21 11110000
Q ss_pred CCCCCccceEeCCccccCCCCCCceecCCCCCcchHHHHHHcCCceeeeeCCCCccccCCCCCCCCCChhhHHHHHHHHH
Q 001708 405 PFNGRKIPIICDAILVDPKFGTGAVKITPAHDPNDFDVGKRHNLEFINIFTDDGKINSNGGLEFEGMPRFKAREAVNEAL 484 (1022)
Q Consensus 405 P~~~~~~pIi~~~~~V~~~~GTG~V~~~PaH~~~Dy~~~~~~~L~~i~iid~~G~~~e~~g~~f~G~~~~~ar~~vi~~L 484 (1022)
=..+.. |+.+.+ -++|.||.++|+. .+|
T Consensus 163 ~~~~~~---------~~~~~~--------K~~~~DF~Lwk~~----------------~~~------------------- 190 (463)
T PRK00260 163 LQAGAR---------VEVAEE--------KRDPLDFALWKAA----------------KPG------------------- 190 (463)
T ss_pred HhccCc---------CCcccC--------CCCccccceecCC----------------CCC-------------------
Confidence 000000 111111 3567777666532 111
Q ss_pred HHcCCccccccccccccccccCCCceecccccccceechHHHHHHHHhhhccCCCceEEeccccHHHHHHHHhhccCccc
Q 001708 485 KKKGLYRGAKDNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKLELIPRQYTAEWRRWLEAIRDWCV 564 (1022)
Q Consensus 485 ~~~gll~~~~~~~~~~p~c~Rs~~~i~~~~~~QWFi~~~~l~~~al~~v~~~~~~~i~~~P~~~~~~~~~wl~~l~DWcI 564 (1022)
+ .. |
T Consensus 191 -----------------------~--------------------------------~~-------------------w-- 194 (463)
T PRK00260 191 -----------------------E--------------------------------PS-------------------W-- 194 (463)
T ss_pred -----------------------C--------------------------------CC-------------------C--
Confidence 0 00 0
Q ss_pred eeccCCCCccCcceeccCchhhhccCCCCcceEEecCHHHHHHHHhhhcCCCCcccccCCCcEEEEeccCccccccccCC
Q 001708 565 SRQLWWGHQIPAWYVTLEDDELKELGSYNDHWIVARDEKEALAVANKKFSGKKFEMCQDPDVLDTWFSSGLFPLSVLGWP 644 (1022)
Q Consensus 565 SRQ~~WG~pIP~~~~~~~~~~~~~~~~~~~~w~~~~~~~ea~~~~~~~~~~~~~~~~~d~DvlDtWFdSgl~p~s~lg~p 644 (1022)
.-.||.--|.|+++.+- . -...+|
T Consensus 195 --~s~~g~grpgWhiecsa----------------------m------------------------------~~~~lg-- 218 (463)
T PRK00260 195 --ESPWGKGRPGWHIECSA----------------------M------------------------------STKYLG-- 218 (463)
T ss_pred --CCCCCCCCCChhHHHHH----------------------H------------------------------HHHhcC--
Confidence 01367667888875320 0 001112
Q ss_pred CCChhhhhcCCcCcccccccccchHHHHHHHHHhhhcCCCCceEEEeccceeCCCCccceecCCcccCcchhhccccchh
Q 001708 645 DDTDDLKAFYPTSVLETGHDILFFWVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLEG 724 (1022)
Q Consensus 645 ~~~~d~~~~~P~dl~~~G~Dil~fW~a~m~~~~~~l~~~~Pfk~V~~Hg~v~D~~GrKMSKSlGNvIdP~dvI~g~~l~~ 724 (1022)
-|.|++.+|.|++|.|..++++.+.+++| .||.++++|+.+++.+|+|||||+||+|+|.|+++
T Consensus 219 ---------~~~Dih~gG~DlifpHh~neiaqs~a~~g-~p~~~~w~H~g~v~~~G~KMSKS~GN~i~~~dll~------ 282 (463)
T PRK00260 219 ---------ETFDIHGGGADLIFPHHENEIAQSEAATG-KPFANYWMHNGFVTVNGEKMSKSLGNFFTIRDLLK------ 282 (463)
T ss_pred ---------CCcceecCccccCCCchHhHHHHHHHhcC-CCcceEEEEccEEccCCCcccCcCCCCCCHHHHHH------
Confidence 26689999999999999999999999999 89999999998889999999999999999999998
Q ss_pred HHHhhhcCCCChHHHHHHHhcccCCCCCCCCCCCchHHHHHHHhccCCCcccccchhhhHHHHHHHHHHHHHHHHHHhhc
Q 001708 725 LHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLDIQRVVGYRQWCNKLWNAVRFSMSKL 804 (1022)
Q Consensus 725 l~~~l~~~nl~~~e~~~a~~~~~~~~~~~i~~~GaDaLR~~L~~~~~~~~Dinf~~~~~~~~r~f~nkl~N~~rf~l~~l 804 (1022)
+||+|++||++++ +...++++|+.+.+...++++++|||+++++..
T Consensus 283 -------------------------------~~~~d~lR~~ll~-~~~~~~~~fs~~~l~~a~~~~~rl~~~~~~~~~-- 328 (463)
T PRK00260 283 -------------------------------KYDPEVLRFFLLS-AHYRSPLNFSEEALEQAKKALERLYNALAETAL-- 328 (463)
T ss_pred -------------------------------HcCchHhHHHHHh-CCCCCCCccCHHHHHHHHHHHHHHHHHHHHhhh--
Confidence 8999999999996 667889999999999999999999999998741
Q ss_pred CCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHhhhh-cCCHHHHHHHHHHHHHhhhhHHHHHh
Q 001708 805 GEGFVPPLKLHPHNLPFSCKWILSVLNKAISRTASSLN-SYEFSDAASTVYSWWQYQFCDVFIEA 868 (1022)
Q Consensus 805 ~~~~~p~~~~~~~~~~~~D~wil~~L~~~~~~v~~a~e-~~~f~~a~~~i~~f~~~~l~~~Yle~ 868 (1022)
...|+|++++++.++..+.++|+ +|+++.|+..|++|+ ...|.|++.
T Consensus 329 ---------------~~~d~~~~~~l~~~~~~~~~al~ddln~~~Al~~l~~lv--~~~n~~~~~ 376 (463)
T PRK00260 329 ---------------GEDDEALLAELEEFKERFIEAMDDDFNTPEALAVLFELA--REINRALET 376 (463)
T ss_pred ---------------ccchhhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH--HHHHHHhhc
Confidence 12578999999999999999995 899999999999995 445677653
No 47
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional
Probab=100.00 E-value=8.7e-36 Score=360.54 Aligned_cols=379 Identities=17% Similarity=0.255 Sum_probs=279.7
Q ss_pred cccCCCCCCCcEEEECCCCCCCCCCCcchhHHHHHHHHHHHHHH-hCCCeeeeeccCCccChhHHHHHHHHHHHHhCCC-
Q 001708 166 FIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRR-MSGYNALWVPGMDHAGIATQVVVEKKLMRERKLT- 243 (1022)
Q Consensus 166 f~~~~~~~k~~f~i~~pPPy~nG~LHiGHal~~~i~Dii~Ry~r-m~G~~Vl~~pG~D~~Glp~q~~vEk~l~~~~~~~- 243 (1022)
|.|.. .++=.+++|.|-+| +.+|||||++++..|++.||.| +.||+|.|+.|+|.||-.|...+++ .|++
T Consensus 53 f~p~~-~~~v~~Y~CGPTvY--d~~HiGhart~v~~Dil~R~l~~~~Gy~V~~v~nitDidDKIi~~A~~-----~g~~~ 124 (651)
T PTZ00399 53 FVPQN-GRQVRWYTCGPTVY--DSSHLGHARTYVTFDIIRRILEDYFGYDVFYVMNITDIDDKIIKRARE-----EKLSI 124 (651)
T ss_pred cccCC-CCeeEEEEeCCCcc--CCcccccchHHHHHHHHHHHHHHhcCCceEEEeCCCCcchHHHHHHHH-----hCCCc
Confidence 55433 23347999998888 9999999999999999999999 9999999999999999998766643 5665
Q ss_pred ccccChHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHHHcCcEEEcceeeeecCCCCc
Q 001708 244 RHDIGREQFVSEVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDLRLVNWDCVLRT 323 (1022)
Q Consensus 244 ~~~~g~e~f~~~~~~~~~~~~~~i~~ql~rlG~s~DW~r~~~T~d~~~~~~v~~~F~~L~ekGlIyr~~~~V~W~p~~~T 323 (1022)
+ +++++.|.+.+.+.|++|||..+ ..+.|. .+|...|..++.+|.++|++|.+..-|+++.+.
T Consensus 125 ~------------~el~~~~~~~f~~d~~~Lni~~p--~~~~r~-tehi~~ii~~i~~Li~~G~aY~~~gsvyFd~~~-- 187 (651)
T PTZ00399 125 F------------LELARKWEKEFFEDMKALNVRPP--DVITRV-SEYVPEIVDFIQKIIDNGFAYESNGSVYFDVEA-- 187 (651)
T ss_pred H------------HHHHHHHHHHHHHHHHHcCCCCC--ccccCc-CccHHHHHHHHHHHHHCCCEEEECCeEEEEchh--
Confidence 3 36788889999999999999987 334344 799999999999999999999986655555431
Q ss_pred cccccccccccCCCceEEeecCccccccceeeEeEeeecCCCcceEEEeeccccccccCcEEEEcCCccccccccCCeee
Q 001708 324 AISDIEVDYVDIPKREMRNVPGYEKQVEFGVLTSFAYPLEGGLGEIVVATTRVETMLGDTAIAIHPEDARYSHLHGKFAI 403 (1022)
Q Consensus 324 aLsd~EVe~~~~~~~t~~~vp~y~~~~e~g~l~~~~y~l~~~~~~l~v~TTrPeTl~g~~avaV~P~d~ry~~L~G~~~~ 403 (1022)
|... ...|..|
T Consensus 188 ----------------------f~~~-----------------------------------------~~~Yg~L------ 198 (651)
T PTZ00399 188 ----------------------FRKA-----------------------------------------GHVYPKL------ 198 (651)
T ss_pred ----------------------cccc-----------------------------------------hhhHHhh------
Confidence 0000 0001111
Q ss_pred cCCCCCccceEeCCccccCCCCCCce-ecC-CCCCcchHHHHHHcCCceeeeeCCCCccccCCCCCCCCCChhhHHHHHH
Q 001708 404 HPFNGRKIPIICDAILVDPKFGTGAV-KIT-PAHDPNDFDVGKRHNLEFINIFTDDGKINSNGGLEFEGMPRFKAREAVN 481 (1022)
Q Consensus 404 ~P~~~~~~pIi~~~~~V~~~~GTG~V-~~~-PaH~~~Dy~~~~~~~L~~i~iid~~G~~~e~~g~~f~G~~~~~ar~~vi 481 (1022)
.|-..+. ...+..|.|.| ... =..++.||.+++..
T Consensus 199 ~p~~~~~--------~~~~~~g~~~l~~~~~~Kr~~~DFaLWk~~----------------------------------- 235 (651)
T PTZ00399 199 EPESVAD--------EDRIAEGEGALGKVSGEKRSPNDFALWKAS----------------------------------- 235 (651)
T ss_pred ChhhcCC--------HHHHhcccCCccccCcCCCCCccHHhhCCC-----------------------------------
Confidence 1111110 12233344422 112 14455666555321
Q ss_pred HHHHHcCCccccccccccccccccCCCceecccccccceechHHHHHHHHhhhccCCCceEEeccccHHHHHHHHhhccC
Q 001708 482 EALKKKGLYRGAKDNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKLELIPRQYTAEWRRWLEAIRD 561 (1022)
Q Consensus 482 ~~L~~~gll~~~~~~~~~~p~c~Rs~~~i~~~~~~QWFi~~~~l~~~al~~v~~~~~~~i~~~P~~~~~~~~~wl~~l~D 561 (1022)
. .++..
T Consensus 236 --------------------------k-----------------------------pgep~------------------- 241 (651)
T PTZ00399 236 --------------------------K-----------------------------PGEPS------------------- 241 (651)
T ss_pred --------------------------C-----------------------------CCCCC-------------------
Confidence 0 01110
Q ss_pred ccceeccCCCCccCcceeccCchhhhccCCCCcceEEecCHHHHHHHHhhhcCCCCcccccCCCcEEEEeccCccccccc
Q 001708 562 WCVSRQLWWGHQIPAWYVTLEDDELKELGSYNDHWIVARDEKEALAVANKKFSGKKFEMCQDPDVLDTWFSSGLFPLSVL 641 (1022)
Q Consensus 562 WcISRQ~~WG~pIP~~~~~~~~~~~~~~~~~~~~w~~~~~~~ea~~~~~~~~~~~~~~~~~d~DvlDtWFdSgl~p~s~l 641 (1022)
|- -.||---|.|+++++- +-...+
T Consensus 242 W~----SpwG~GrPGWHiECsa----------------------------------------------------m~~~~l 265 (651)
T PTZ00399 242 WD----SPWGKGRPGWHIECSA----------------------------------------------------MASNIL 265 (651)
T ss_pred CC----CCCCCCCCCchHHHHH----------------------------------------------------HHHHHc
Confidence 11 2567778888875320 000112
Q ss_pred cCCCCChhhhhcCCcCcccccccccchHHHHHHHHHhhhcCCCCceEEEec-cceeCCCCccceecCCcccCcchhhccc
Q 001708 642 GWPDDTDDLKAFYPTSVLETGHDILFFWVARMVMLGIKLGGEVPFTKVYLH-PMIRDAHGRKMSKSLGNVIDPLEVINGI 720 (1022)
Q Consensus 642 g~p~~~~d~~~~~P~dl~~~G~Dil~fW~a~m~~~~~~l~~~~Pfk~V~~H-g~v~D~~GrKMSKSlGNvIdP~dvI~g~ 720 (1022)
| +|.|++..|.|++|.+.-.-++.+.+++|+.||.++++| |||. .+|+|||||+||+|+|.|+|+
T Consensus 266 g-----------~~~DIh~gG~DL~FPHHeNEiAQseA~~~~~~~v~y~~H~G~L~-i~G~KMSKSLGNfItp~dlLe-- 331 (651)
T PTZ00399 266 G-----------DPIDIHSGGIDLKFPHHDNELAQSEAYFDKHQWVNYFLHSGHLH-IKGLKMSKSLKNFITIRQALS-- 331 (651)
T ss_pred C-----------CcceeeccCCCCCCCcchhHHHHHHHhhCCCCCCcEEEEEEEEE-eccchhhhcCCCcccHHHHHH--
Confidence 2 378999999999999999999999999999999999999 9875 899999999999999999999
Q ss_pred cchhHHHhhhcCCCChHHHHHHHhcccCCCCCCCCCCCchHHHHHHHhccCCCcccccchhhhHHHHHHHHHHHHHHHHH
Q 001708 721 SLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLDIQRVVGYRQWCNKLWNAVRFS 800 (1022)
Q Consensus 721 ~l~~l~~~l~~~nl~~~e~~~a~~~~~~~~~~~i~~~GaDaLR~~L~~~~~~~~Dinf~~~~~~~~r~f~nkl~N~~rf~ 800 (1022)
+||+|+|||+|++. ..++|++|+.+.+....+..++++|.+..+
T Consensus 332 -----------------------------------kygaDaLR~~lLs~-~~~~dldFS~e~l~~a~~~~~~l~n~~~rl 375 (651)
T PTZ00399 332 -----------------------------------KYTARQIRLLFLLH-KWDKPMNYSDESMDEAIEKDKVFFNFFANV 375 (651)
T ss_pred -----------------------------------HcChHHHHHHHHhc-CCCCCCccCHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999864 888999999999999888888999988777
Q ss_pred HhhcCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHhhh-hcCCHHHHHHHHHHHHHhhhhHHHHH
Q 001708 801 MSKLGEGFVPPLKLHPHNLPFSCKWILSVLNKAISRTASSL-NSYEFSDAASTVYSWWQYQFCDVFIE 867 (1022)
Q Consensus 801 l~~l~~~~~p~~~~~~~~~~~~D~wil~~L~~~~~~v~~a~-e~~~f~~a~~~i~~f~~~~l~~~Yle 867 (1022)
...+.....+. .......|+|++..++.+...+.++| ++|+++.|+..|++|+ ..+|.|++
T Consensus 376 ~s~l~~~~~~~----~~~~~~~d~~Ll~~l~~~~~~v~~Am~Ddfnt~~Al~~L~eLv--~~~N~yi~ 437 (651)
T PTZ00399 376 KIKLRESELTS----PQKWTQHDFELNELFEETKSAVHAALLDNFDTPEALQALQKLI--SATNTYLN 437 (651)
T ss_pred HHHHhhccccc----cccCCHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH--HHHHHHHh
Confidence 55443211111 11235679999999999999999999 7899999999999995 56899996
No 48
>TIGR00435 cysS cysteinyl-tRNA synthetase. This model finds the cysteinyl-tRNA synthetase from most but not from all species. The enzyme from one archaeal species, Archaeoglobus fulgidus, is found but the equivalent enzymes from some other Archaea, including Methanococcus jannaschii, are not found, although biochemical evidence suggests that tRNA(Cys) in these species are charged directly with Cys rather than through a misacylation and correction pathway as for tRNA(Gln).
Probab=100.00 E-value=7e-36 Score=350.97 Aligned_cols=355 Identities=19% Similarity=0.242 Sum_probs=254.9
Q ss_pred cccCCCCCCCcEEEECCCCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeeeeeccCCccChhHHHHHHHHHHHHhCCCcc
Q 001708 166 FIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRH 245 (1022)
Q Consensus 166 f~~~~~~~k~~f~i~~pPPy~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG~D~~Glp~q~~vEk~l~~~~~~~~~ 245 (1022)
|+|.. .++.+++++.| +|+|.+|||||++++..|+++||.|++||+|.|+.|+|.||.+|...++ +.|+++.
T Consensus 14 f~p~~-~~~v~~yvcgp--tvy~~~HiGhar~~v~~Dvl~R~lr~~G~~V~~v~n~tD~ddkIi~~A~-----~~g~~~~ 85 (465)
T TIGR00435 14 FEPLV-QGKVKMYVCGP--TVYDYCHIGHARTAIVFDVLRRYLRYLGYKVQYVQNITDIDDKIIKRAR-----ENGESVY 85 (465)
T ss_pred cccCC-CCcceEEEecC--ccCCCcccccchHHHHHHHHHHHHHHcCCcEEEEEeeCCccHHHHHHHH-----HcCCCHH
Confidence 55433 34557777765 7778999999999999999999999999999999999999999866553 3577653
Q ss_pred ccChHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHHHcCcEEEcc-eeeeecCCCCcc
Q 001708 246 DIGREQFVSEVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDL-RLVNWDCVLRTA 324 (1022)
Q Consensus 246 ~~g~e~f~~~~~~~~~~~~~~i~~ql~rlG~s~DW~r~~~T~d~~~~~~v~~~F~~L~ekGlIyr~~-~~V~W~p~~~Ta 324 (1022)
++++.+.+.+.++|++||+++|+-....| .|...+.++|.+|.++|++|.+. ..|+||+.+-.
T Consensus 86 ------------e~a~~~~~~f~~dl~~LgI~~d~~~~raT---~hi~~i~~~i~~L~ekG~aY~~~~g~vyfdv~~~~- 149 (465)
T TIGR00435 86 ------------EVSERFIEAYFEDMKALNVLPPDLEPRAT---EHIDEIIEFIEQLIEKGYAYVSDNGDVYFDVSKFK- 149 (465)
T ss_pred ------------HHHHHHHHHHHHHHHHhCCCCCcCCcccc---ccHHHHHHHHHHHHHCCCEEEecCCcEEEeccccc-
Confidence 67889999999999999999995333233 68899999999999999999998 89999986521
Q ss_pred ccccccccccCCCceEEeecCccccccceeeEeEeeecCCCcceEEEeeccccccccCcEEEEcCCccccccccCCeeec
Q 001708 325 ISDIEVDYVDIPKREMRNVPGYEKQVEFGVLTSFAYPLEGGLGEIVVATTRVETMLGDTAIAIHPEDARYSHLHGKFAIH 404 (1022)
Q Consensus 325 Lsd~EVe~~~~~~~t~~~vp~y~~~~e~g~l~~~~y~l~~~~~~l~v~TTrPeTl~g~~avaV~P~d~ry~~L~G~~~~~ 404 (1022)
+| |.| .|..
T Consensus 150 ------~y--------------------G~l------------------------------------------s~~~--- 158 (465)
T TIGR00435 150 ------DY--------------------GKL------------------------------------------SKQD--- 158 (465)
T ss_pred ------hh--------------------ccC------------------------------------------CCCC---
Confidence 11 111 1100
Q ss_pred CCCCCccceEeCCccccCCCCCCceecCC-CCCcchHHHHHHcCCceeeeeCCCCccccCCCCCCCCCChhhHHHHHHHH
Q 001708 405 PFNGRKIPIICDAILVDPKFGTGAVKITP-AHDPNDFDVGKRHNLEFINIFTDDGKINSNGGLEFEGMPRFKAREAVNEA 483 (1022)
Q Consensus 405 P~~~~~~pIi~~~~~V~~~~GTG~V~~~P-aH~~~Dy~~~~~~~L~~i~iid~~G~~~e~~g~~f~G~~~~~ar~~vi~~ 483 (1022)
+ -++..|.++ -..+ -++|.||.++
T Consensus 159 ------~--------~~~~~~~~~-~~~~~K~~p~DF~Lw---------------------------------------- 183 (465)
T TIGR00435 159 ------L--------DQLEAGARV-DVDEAKRNKLDFVLW---------------------------------------- 183 (465)
T ss_pred ------H--------HHHhccccc-CcccccCCCCCceee----------------------------------------
Confidence 0 000001110 0000 1344444333
Q ss_pred HHHcCCccccccccccccccccCCCceecccccccceechHHHHHHHHhhhccCCCceEEeccccHHHHHHHHhhccCcc
Q 001708 484 LKKKGLYRGAKDNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKLELIPRQYTAEWRRWLEAIRDWC 563 (1022)
Q Consensus 484 L~~~gll~~~~~~~~~~p~c~Rs~~~i~~~~~~QWFi~~~~l~~~al~~v~~~~~~~i~~~P~~~~~~~~~wl~~l~DWc 563 (1022)
++..+ +++. |
T Consensus 184 ---------------------k~~~~-----------------------------~~~~-------------------w- 193 (465)
T TIGR00435 184 ---------------------KSSKE-----------------------------GEPK-------------------W- 193 (465)
T ss_pred ---------------------CCCCC-----------------------------CCCC-------------------C-
Confidence 22210 1111 1
Q ss_pred ceeccCCCCccCcceeccCchhhhccCCCCcceEEecCHHHHHHHHhhhcCCCCcccccCCCcEEEEeccCccccccccC
Q 001708 564 VSRQLWWGHQIPAWYVTLEDDELKELGSYNDHWIVARDEKEALAVANKKFSGKKFEMCQDPDVLDTWFSSGLFPLSVLGW 643 (1022)
Q Consensus 564 ISRQ~~WG~pIP~~~~~~~~~~~~~~~~~~~~w~~~~~~~ea~~~~~~~~~~~~~~~~~d~DvlDtWFdSgl~p~s~lg~ 643 (1022)
.-.||.--|-|+++.+- . -...+|
T Consensus 194 ---~spwG~grpgWhiecsa----------------------m------------------------------~~~~lg- 217 (465)
T TIGR00435 194 ---DSPWGKGRPGWHIECSA----------------------M------------------------------NDKYLG- 217 (465)
T ss_pred ---cCCCCCCCCCcHhHHHH----------------------H------------------------------HHHhcC-
Confidence 12588888999875320 0 001122
Q ss_pred CCCChhhhhcCCcCcccccccccchHHHHHHHHHhhhcCCCCceEEEeccceeCCCCccceecCCcccCcchhhccccch
Q 001708 644 PDDTDDLKAFYPTSVLETGHDILFFWVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLE 723 (1022)
Q Consensus 644 p~~~~d~~~~~P~dl~~~G~Dil~fW~a~m~~~~~~l~~~~Pfk~V~~Hg~v~D~~GrKMSKSlGNvIdP~dvI~g~~l~ 723 (1022)
.|.|++..|.|++|.|....++.+.+++|+ ||.++++|+.+++.+|+|||||+||+|+|.|+++
T Consensus 218 ----------~~~Dih~gG~Dl~fpHhene~aqs~a~~g~-~~~~~~~h~g~v~~~g~KMSKS~GN~i~~~dll~----- 281 (465)
T TIGR00435 218 ----------DQIDIHGGGVDLIFPHHENEIAQSEAAFGK-QLAKYWMHNGFLMIDNEKMSKSLGNFFTVRDVLK----- 281 (465)
T ss_pred ----------CCceeeccccccccchHHHHHHHHHHhcCC-CCCcEEEEeeEEEecCccccccCCCcCCHHHHHH-----
Confidence 256899999999999999999999999995 7788888877778999999999999999999998
Q ss_pred hHHHhhhcCCCChHHHHHHHhcccCCCCCCCCCCCchHHHHHHHhccCCCcccccchhhhHHHHHHHHHHHHHHHHHHhh
Q 001708 724 GLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLDIQRVVGYRQWCNKLWNAVRFSMSK 803 (1022)
Q Consensus 724 ~l~~~l~~~nl~~~e~~~a~~~~~~~~~~~i~~~GaDaLR~~L~~~~~~~~Dinf~~~~~~~~r~f~nkl~N~~rf~l~~ 803 (1022)
+||+|++|||+++ +...++++|+.+.+...++++++|||+++++...
T Consensus 282 --------------------------------~~~~dalR~~ll~-~~~~~~l~fs~~~l~~a~~~~~rl~~~~~~~~~~ 328 (465)
T TIGR00435 282 --------------------------------NYDPEILRYFLLS-VHYRSPLDFSEELLEAAKNALERLYKALRVLDTT 328 (465)
T ss_pred --------------------------------HCCHHHHHHHHHh-CCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 8999999999996 4678899999999999999999999999987543
Q ss_pred cCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHhhhh-cCCHHHHHHHHHHHH
Q 001708 804 LGEGFVPPLKLHPHNLPFSCKWILSVLNKAISRTASSLN-SYEFSDAASTVYSWW 857 (1022)
Q Consensus 804 l~~~~~p~~~~~~~~~~~~D~wil~~L~~~~~~v~~a~e-~~~f~~a~~~i~~f~ 857 (1022)
+.... .. ... .+ .....+...+.++|+ ++++..|+..|++++
T Consensus 329 ~~~~~--~~---~~~---~~----~~~~~~~~~f~~al~dDlnt~~a~~~l~~~~ 371 (465)
T TIGR00435 329 LAYSG--NQ---SLN---KF----PDEKEFEARFVEAMDDDLNTANALAVLFELA 371 (465)
T ss_pred hcccc--cc---ccc---cc----hhHHHHHHHHHHHHhhccCHHHHHHHHHHHH
Confidence 32100 00 000 00 112344566777884 699999999999985
No 49
>PRK12418 cysteinyl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.4e-34 Score=328.99 Aligned_cols=343 Identities=18% Similarity=0.166 Sum_probs=253.5
Q ss_pred CCcEEEECCCCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeeeeeccCCccChhHHHHHHHHHHHHhCCCccccChHHHH
Q 001708 174 KPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFV 253 (1022)
Q Consensus 174 k~~f~i~~pPPy~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG~D~~Glp~q~~vEk~l~~~~~~~~~~~g~e~f~ 253 (1022)
+-++++|-|.|| |.+||||+++++..|++.||.|++|++|.|+.|+|.||-+|+..+++ +|+++.
T Consensus 9 ~v~~YvCGpTvY--~~~HIGh~r~~V~~Dvl~R~lr~~G~~V~~V~nitD~ddKIi~~A~~-----~G~~~~-------- 73 (384)
T PRK12418 9 TATMYVCGITPY--DATHLGHAATYLAFDLVNRVWRDAGHDVHYVQNVTDVDDPLLERAAR-----DGVDWR-------- 73 (384)
T ss_pred eeEEEecCCCCC--CCCccchhHHHHHHHHHHHHHHHcCCceEEEEecCCcchHHHHHHHH-----cCCCHH--------
Confidence 347889999998 99999999999999999999999999999999999999999877754 577764
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcc-ccccCCccccCChhhHHHHHHHHHHHHHcCcEEEcce----eeeecCCCCcccccc
Q 001708 254 SEVWKWKDEYGGTILRQQRRLGA-SLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDLR----LVNWDCVLRTAISDI 328 (1022)
Q Consensus 254 ~~~~~~~~~~~~~i~~ql~rlG~-s~DW~r~~~T~d~~~~~~v~~~F~~L~ekGlIyr~~~----~V~W~p~~~TaLsd~ 328 (1022)
++++.|.+.+.+.|++||+ +.| ....|+++ ...+++++.+|.++|++|.... -|+++.+.
T Consensus 74 ----e~a~~~~~~f~~d~~~Lni~~~~--~~~raTe~--i~~~~~~i~~L~~kG~aY~~~~~~~~~VYFdv~~------- 138 (384)
T PRK12418 74 ----DLAEREIALFREDMEALRVLPPR--DYVGAVES--IPEVVELVEKLLASGAAYVVDDEEYPDVYFSVDA------- 138 (384)
T ss_pred ----HHHHHHHHHHHHHHHHhCCCCCC--ccccCCCC--HHHHHHHHHHHHHCCCEEEeCCCCCccEEEecCc-------
Confidence 7789999999999999997 565 66667764 8999999999999999999887 67777642
Q ss_pred ccccccCCCceEEeecCccccccceeeEeEeeecCCCcceEEEeeccccccccCcEEEEcCCccccccccCCeeecCCCC
Q 001708 329 EVDYVDIPKREMRNVPGYEKQVEFGVLTSFAYPLEGGLGEIVVATTRVETMLGDTAIAIHPEDARYSHLHGKFAIHPFNG 408 (1022)
Q Consensus 329 EVe~~~~~~~t~~~vp~y~~~~e~g~l~~~~y~l~~~~~~l~v~TTrPeTl~g~~avaV~P~d~ry~~L~G~~~~~P~~~ 408 (1022)
+|.| |.| .|...
T Consensus 139 --------------~~~Y------G~l------------------------------------------s~~~~------ 150 (384)
T PRK12418 139 --------------TPQF------GYE------------------------------------------SGYDR------ 150 (384)
T ss_pred --------------hhhc------ccc------------------------------------------cCCCH------
Confidence 1111 211 11000
Q ss_pred CccceEeCCccccCCC--CCCceec-CC-CCCcchHHHHHHcCCceeeeeCCCCccccCCCCCCCCCChhhHHHHHHHHH
Q 001708 409 RKIPIICDAILVDPKF--GTGAVKI-TP-AHDPNDFDVGKRHNLEFINIFTDDGKINSNGGLEFEGMPRFKAREAVNEAL 484 (1022)
Q Consensus 409 ~~~pIi~~~~~V~~~~--GTG~V~~-~P-aH~~~Dy~~~~~~~L~~i~iid~~G~~~e~~g~~f~G~~~~~ar~~vi~~L 484 (1022)
-++.. |...|-. .+ -.+|.||.++|.
T Consensus 151 -----------~~~~~~~~~~~~~~~~~~K~~p~DFaLWK~--------------------------------------- 180 (384)
T PRK12418 151 -----------ATMLELFAERGGDPDRPGKRDPLDALLWRA--------------------------------------- 180 (384)
T ss_pred -----------HHHHhhhcccccCcccccCCCcccceeecc---------------------------------------
Confidence 00000 0000000 00 234455544321
Q ss_pred HHcCCccccccccccccccccCCCceecccccccceechHHHHHHHHhhhccCCCceEEeccccHHHHHHHHhhccCccc
Q 001708 485 KKKGLYRGAKDNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKLELIPRQYTAEWRRWLEAIRDWCV 564 (1022)
Q Consensus 485 ~~~gll~~~~~~~~~~p~c~Rs~~~i~~~~~~QWFi~~~~l~~~al~~v~~~~~~~i~~~P~~~~~~~~~wl~~l~DWcI 564 (1022)
.. .+++.|
T Consensus 181 ----------------------~~-----------------------------~~~~~w--------------------- 188 (384)
T PRK12418 181 ----------------------AR-----------------------------PGEPSW--------------------- 188 (384)
T ss_pred ----------------------CC-----------------------------CCCCcc---------------------
Confidence 00 011111
Q ss_pred eeccCCCCccCcceeccCchhhhccCCCCcceEEecCHHHHHHHHhhhcCCCCcccccCCCcEEEEeccCccccccccCC
Q 001708 565 SRQLWWGHQIPAWYVTLEDDELKELGSYNDHWIVARDEKEALAVANKKFSGKKFEMCQDPDVLDTWFSSGLFPLSVLGWP 644 (1022)
Q Consensus 565 SRQ~~WG~pIP~~~~~~~~~~~~~~~~~~~~w~~~~~~~ea~~~~~~~~~~~~~~~~~d~DvlDtWFdSgl~p~s~lg~p 644 (1022)
.-.||---|-|+++++- +-...+|
T Consensus 189 --~spwG~GRPGWHiECsa----------------------------------------------------m~~~~lg-- 212 (384)
T PRK12418 189 --PSPFGPGRPGWHIECSA----------------------------------------------------IALNRLG-- 212 (384)
T ss_pred --cCCCCCCCChhHHHHHH----------------------------------------------------HHHHHcC--
Confidence 22588888999876430 0111222
Q ss_pred CCChhhhhcCCcCcccccccccchHHHHHHHHHhhhcCCCCceEEEeccceeCCCCccceecCCcccCcchhhccccchh
Q 001708 645 DDTDDLKAFYPTSVLETGHDILFFWVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLEG 724 (1022)
Q Consensus 645 ~~~~d~~~~~P~dl~~~G~Dil~fW~a~m~~~~~~l~~~~Pfk~V~~Hg~v~D~~GrKMSKSlGNvIdP~dvI~g~~l~~ 724 (1022)
-|.|++..|.|++|.|...+++.+.+++|+.||.++++|+.+++.+|+|||||+||+|+|.++++
T Consensus 213 ---------~~~DIH~GG~DL~FPHHeneiaq~~a~~g~~~~~~~w~H~g~l~~~G~KMSKSlGN~i~~~ell~------ 277 (384)
T PRK12418 213 ---------SGFDIQGGGSDLIFPHHEFSAAHAEAATGERRFARHYVHAGMIGLDGEKMSKSRGNLVFVSRLRA------ 277 (384)
T ss_pred ---------CCcccccCccccccchhHhHHHHHHHhcCCCCcceEEEECCEECCCCCcccCcCCCcCCHHHHHh------
Confidence 24589999999999999999999999999999999999999999999999999999999999764
Q ss_pred HHHhhhcCCCChHHHHHHHhcccCCCCCCCCCCCch--HHHHHHHhccCCCcccccchhhhHHHHHHHHHHHHHHHHHHh
Q 001708 725 LHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTD--ALRFALVSYTAQSDKINLDIQRVVGYRQWCNKLWNAVRFSMS 802 (1022)
Q Consensus 725 l~~~l~~~nl~~~e~~~a~~~~~~~~~~~i~~~GaD--aLR~~L~~~~~~~~Dinf~~~~~~~~r~f~nkl~N~~rf~l~ 802 (1022)
+|.| ++|||++ .+...++++|+.+.++..++.+++++|++...
T Consensus 278 --------------------------------~G~d~~~lR~~ll-s~~yr~~l~fs~e~l~~a~~~l~r~~~~~~~~-- 322 (384)
T PRK12418 278 --------------------------------AGVDPAAIRLALL-AGHYRADREWTDAVLAEAEARLARWRAAAALP-- 322 (384)
T ss_pred --------------------------------ccCChhheeEEEe-ccCCCCCcccCHHHHHHHHHHHHHHHHHHhcc--
Confidence 4555 9999987 57788999999999999999999999876421
Q ss_pred hcCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHhhhh-cCCHHHHHHHHHHHHHhhhhHHHHH
Q 001708 803 KLGEGFVPPLKLHPHNLPFSCKWILSVLNKAISRTASSLN-SYEFSDAASTVYSWWQYQFCDVFIE 867 (1022)
Q Consensus 803 ~l~~~~~p~~~~~~~~~~~~D~wil~~L~~~~~~v~~a~e-~~~f~~a~~~i~~f~~~~l~~~Yle 867 (1022)
.. . .+..+.+.+.++|+ ++++..|+..|++++ ...|.|+.
T Consensus 323 --~~-------------~--------~~~~~~~~f~~al~dDlnt~~a~~~l~~~~--~~~n~~~~ 363 (384)
T PRK12418 323 --AG-------------P--------DAADVVARVRAALADDLDTPGALAAVDGWA--TDALEGGG 363 (384)
T ss_pred --cc-------------c--------hHHHHHHHHHHHHHhcCChHHHHHHHHHHH--HHHHhccC
Confidence 00 0 12344677888885 599999999999985 45666653
No 50
>TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase. Members of this protein family are MshC, l-cysteine:1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an enzyme that uses ATP to ligate a Cys residue to a mycothiol precursor molecule, in the second to last step in mycothiol biosynthesis. This enzyme shows considerable homology to Cys--tRNA ligases, and many instances are misannotated as such. Mycothiol is found in Mycobacterium tuberculosis, Corynebacterium glutamicum, Streptomyces coelicolor, and various other members of the Actinobacteria. Mycothiol is an analog to glutathione.
Probab=100.00 E-value=1.8e-34 Score=329.32 Aligned_cols=338 Identities=17% Similarity=0.153 Sum_probs=248.6
Q ss_pred CCCcEEEECCCCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeeeeeccCCccChhHHHHHHHHHHHHhCCCccccChHHH
Q 001708 173 SKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQF 252 (1022)
Q Consensus 173 ~k~~f~i~~pPPy~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG~D~~Glp~q~~vEk~l~~~~~~~~~~~g~e~f 252 (1022)
++-++++|.|.|| +.+||||+++++..|+++||+|++||+|.|+.|+|+||-+|+..+++ +|+++.
T Consensus 35 ~~v~~YvCGpTvY--~~~HIGhart~V~~Dvl~R~lr~~G~~V~fV~nitD~dDKIi~~A~~-----~g~t~~------- 100 (411)
T TIGR03447 35 PEAGMYVCGITPY--DATHLGHAATYLTFDLVNRVWRDAGHRVHYVQNVTDVDDPLFERAER-----DGVDWR------- 100 (411)
T ss_pred CcceEEEeCCccC--CCcccccchHHHHHHHHHHHHHhcCCceEEeeCCCchhHHHHHHHHH-----cCCCHH-------
Confidence 3457999999999 89999999999999999999999999999999999999999877754 577764
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccc-cccCCccccCChhhHHHHHHHHHHHHHcCcEEEcce----eeeecCCCCccccc
Q 001708 253 VSEVWKWKDEYGGTILRQQRRLGAS-LDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDLR----LVNWDCVLRTAISD 327 (1022)
Q Consensus 253 ~~~~~~~~~~~~~~i~~ql~rlG~s-~DW~r~~~T~d~~~~~~v~~~F~~L~ekGlIyr~~~----~V~W~p~~~TaLsd 327 (1022)
++++.|...+.+.|++||+. .| .+..|++. ...++++|.+|.++|+||...- -|+++.+.
T Consensus 101 -----ela~~y~~~f~~d~~~Lni~~~d--~~~RaTe~--i~~ii~~i~~L~~kG~aY~~~~~~~~~VYFdv~~------ 165 (411)
T TIGR03447 101 -----ELGTSQIDLFREDMEALRVLPPR--DYIGAVES--IDEVIEMVEKLLAAGAAYEVEGPEYPDVYFSIEA------ 165 (411)
T ss_pred -----HHHHHHHHHHHHHHHHcCCCCCC--cccCCCCC--HHHHHHHHHHHHHCCCEEecCCCCcCcEEEeccc------
Confidence 77899999999999999986 55 55566666 7899999999999999998764 47776541
Q ss_pred cccccccCCCceEEeecCccccccceeeEeEeeecCCCcceEEEeeccccccccCcEEEEcCCccccccccCCeeecCCC
Q 001708 328 IEVDYVDIPKREMRNVPGYEKQVEFGVLTSFAYPLEGGLGEIVVATTRVETMLGDTAIAIHPEDARYSHLHGKFAIHPFN 407 (1022)
Q Consensus 328 ~EVe~~~~~~~t~~~vp~y~~~~e~g~l~~~~y~l~~~~~~l~v~TTrPeTl~g~~avaV~P~d~ry~~L~G~~~~~P~~ 407 (1022)
+|. ||. |.|....
T Consensus 166 ---------------~~~------YG~------------------------------------------Ls~~~~~---- 178 (411)
T TIGR03447 166 ---------------TEQ------FGY------------------------------------------ESGYDRA---- 178 (411)
T ss_pred ---------------hhc------ccc------------------------------------------ccCCCHH----
Confidence 111 121 1111000
Q ss_pred CCccceEeCCccccCCCCCCc--eec-CC-CCCcchHHHHHHcCCceeeeeCCCCccccCCCCCCCCCChhhHHHHHHHH
Q 001708 408 GRKIPIICDAILVDPKFGTGA--VKI-TP-AHDPNDFDVGKRHNLEFINIFTDDGKINSNGGLEFEGMPRFKAREAVNEA 483 (1022)
Q Consensus 408 ~~~~pIi~~~~~V~~~~GTG~--V~~-~P-aH~~~Dy~~~~~~~L~~i~iid~~G~~~e~~g~~f~G~~~~~ar~~vi~~ 483 (1022)
++..|.|. |-. .+ -.+|.||.++|+-+
T Consensus 179 -------------~~~~~~~~~~~~~~~~~K~~p~DFaLWK~~~------------------------------------ 209 (411)
T TIGR03447 179 -------------TMLELFAERGGDPDRPGKRDPLDALLWRAAR------------------------------------ 209 (411)
T ss_pred -------------HHHhhhcccccCcccccCCCCcccceeCCCC------------------------------------
Confidence 00000000 000 01 24555665554210
Q ss_pred HHHcCCccccccccccccccccCCCceecccccccceechHHHHHHHHhhhccCCCceEEeccccHHHHHHHHhhccCcc
Q 001708 484 LKKKGLYRGAKDNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKLELIPRQYTAEWRRWLEAIRDWC 563 (1022)
Q Consensus 484 L~~~gll~~~~~~~~~~p~c~Rs~~~i~~~~~~QWFi~~~~l~~~al~~v~~~~~~~i~~~P~~~~~~~~~wl~~l~DWc 563 (1022)
.+++.|
T Consensus 210 ------------------------------------------------------~~e~~w-------------------- 215 (411)
T TIGR03447 210 ------------------------------------------------------EGEPSW-------------------- 215 (411)
T ss_pred ------------------------------------------------------CCCCCc--------------------
Confidence 011111
Q ss_pred ceeccCCCCccCcceeccCchhhhccCCCCcceEEecCHHHHHHHHhhhcCCCCcccccCCCcEEEEeccCccccccccC
Q 001708 564 VSRQLWWGHQIPAWYVTLEDDELKELGSYNDHWIVARDEKEALAVANKKFSGKKFEMCQDPDVLDTWFSSGLFPLSVLGW 643 (1022)
Q Consensus 564 ISRQ~~WG~pIP~~~~~~~~~~~~~~~~~~~~w~~~~~~~ea~~~~~~~~~~~~~~~~~d~DvlDtWFdSgl~p~s~lg~ 643 (1022)
.-.||.--|-|+++++- +-...+|
T Consensus 216 ---~spwG~GRPGWHiECsa----------------------------------------------------m~~~~lg- 239 (411)
T TIGR03447 216 ---DSPFGPGRPGWHIECSA----------------------------------------------------IATNRLG- 239 (411)
T ss_pred ---cCCCCCCCChhHHHHHH----------------------------------------------------HHHHHcC-
Confidence 12588888999876431 0001112
Q ss_pred CCCChhhhhcCCcCcccccccccchHHHHHHHHHhhhcCCCCceEEEeccceeCCCCccceecCCcccCcchhhccccch
Q 001708 644 PDDTDDLKAFYPTSVLETGHDILFFWVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLE 723 (1022)
Q Consensus 644 p~~~~d~~~~~P~dl~~~G~Dil~fW~a~m~~~~~~l~~~~Pfk~V~~Hg~v~D~~GrKMSKSlGNvIdP~dvI~g~~l~ 723 (1022)
-+.|++..|.|++|.|....++.+.+++|+.||.++++|+..++.+|+|||||+||+|+|.++++.
T Consensus 240 ----------~~~Dih~GG~DLifpHheneiaq~~A~~g~~~~~~~w~H~g~l~~~G~KMSKSlGN~i~~~dl~~~---- 305 (411)
T TIGR03447 240 ----------AGFDIQGGGSDLIFPHHEFSAAHAEAATGVRRMARHYVHAGMIGLDGEKMSKSLGNLVFVSKLRAA---- 305 (411)
T ss_pred ----------CceecccCcccccccchHhHHHHHHHhcCCCCcceEEEECCEECcCCCCccCcCCCCCCHHHHHhc----
Confidence 134789999999999999999999999999999999999999999999999999999999999760
Q ss_pred hHHHhhhcCCCChHHHHHHHhcccCCCCCCCCCCCchHHHHHHHhccCCCcccccchhhhHHHHHHHHHHHHHHHHHHhh
Q 001708 724 GLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLDIQRVVGYRQWCNKLWNAVRFSMSK 803 (1022)
Q Consensus 724 ~l~~~l~~~nl~~~e~~~a~~~~~~~~~~~i~~~GaDaLR~~L~~~~~~~~Dinf~~~~~~~~r~f~nkl~N~~rf~l~~ 803 (1022)
.+++|++|||++ .+...++++|+.+.++..++.+++|++++..+
T Consensus 306 --------------------------------g~dp~~lRl~ll-s~~Yr~pl~fs~e~l~~a~~~l~rl~~~~~~~--- 349 (411)
T TIGR03447 306 --------------------------------GVDPAAIRLGLL-AGHYRQDRDWTDAVLAEAEARLARWRAALAAT--- 349 (411)
T ss_pred --------------------------------CCCcccEEEEEe-cCCCCCCCccCHHHHHHHHHHHHHHHHHHhhc---
Confidence 278889999998 57788899999999999999999998887421
Q ss_pred cCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHhhhh-cCCHHHHHHHHHHHH
Q 001708 804 LGEGFVPPLKLHPHNLPFSCKWILSVLNKAISRTASSLN-SYEFSDAASTVYSWW 857 (1022)
Q Consensus 804 l~~~~~p~~~~~~~~~~~~D~wil~~L~~~~~~v~~a~e-~~~f~~a~~~i~~f~ 857 (1022)
.. . .+..+...+.++|+ ++++..|+..|++++
T Consensus 350 -~~-------------~--------~~~~~~~~~~~al~dDln~p~a~~~l~~~~ 382 (411)
T TIGR03447 350 -DA-------------P--------DATDLIARLRQHLANDLDTPAALAAVDNWA 382 (411)
T ss_pred -cc-------------c--------hHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 00 0 12334556667774 599999999999885
No 51
>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.6e-31 Score=312.11 Aligned_cols=355 Identities=17% Similarity=0.188 Sum_probs=252.0
Q ss_pred CCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeeeeec----------cCCccChhHHHHHHHHHHHHhCCCccccChHHH
Q 001708 183 PPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVP----------GMDHAGIATQVVVEKKLMRERKLTRHDIGREQF 252 (1022)
Q Consensus 183 PPy~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~p----------G~D~~Glp~q~~vEk~l~~~~~~~~~~~g~e~f 252 (1022)
=|+|++.+|||||++++..|++.||.|+.||+|.|+. |.|+||-.|...++ +.|+++.
T Consensus 30 GpTvy~~~HiGhar~~v~~Dvl~R~l~~~G~~V~~v~NiTDv~hl~~~~De~ddKii~~A~-----~~g~~~~------- 97 (490)
T PRK14536 30 GPTVYNYAHIGNLRTYVFQDTLRRTLHFLGYRVTHVMNITDVGHLTDDADSGEDKMVKSAQ-----EHGKSVL------- 97 (490)
T ss_pred CCccCCCcccchhHHHHHHHHHHHHHHhcCCceEEEEeeccccccccCCcCCChHHHHHHH-----HcCCCHH-------
Confidence 4899999999999999999999999999999999996 99999999876554 3677764
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHHHcCcEEEcceeeeecCCCCcccccccccc
Q 001708 253 VSEVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDLRLVNWDCVLRTAISDIEVDY 332 (1022)
Q Consensus 253 ~~~~~~~~~~~~~~i~~ql~rlG~s~DW~r~~~T~d~~~~~~v~~~F~~L~ekGlIyr~~~~V~W~p~~~TaLsd~EVe~ 332 (1022)
++++.|.+.+.+.|++||+..+ .++|..+.|...++++|.+|.++|++|.+..-|+||+..
T Consensus 98 -----e~a~~~~~~f~~d~~~Lni~~~---~~~~rat~hi~~ii~~i~~L~~kG~aY~~~~~vyFdv~~----------- 158 (490)
T PRK14536 98 -----EIAAHYTAAFFRDTARLNIERP---SIVCNATEHIQDMIALIKRLEARGHTYCAGGNVYFDIRT----------- 158 (490)
T ss_pred -----HHHHHHHHHHHHHHHHcCCCCC---ceecCcccHHHHHHHHHHHHHHCCCEEEECCeEEEeCCc-----------
Confidence 6789999999999999999987 344677999999999999999999999999999999842
Q ss_pred ccCCCceEEeecCccccccceeeEeEeeecCCCcceEEEeeccccccccCcEEEEcCCccccccccCCeeecCCCCCccc
Q 001708 333 VDIPKREMRNVPGYEKQVEFGVLTSFAYPLEGGLGEIVVATTRVETMLGDTAIAIHPEDARYSHLHGKFAIHPFNGRKIP 412 (1022)
Q Consensus 333 ~~~~~~t~~~vp~y~~~~e~g~l~~~~y~l~~~~~~l~v~TTrPeTl~g~~avaV~P~d~ry~~L~G~~~~~P~~~~~~p 412 (1022)
+|. |..|.|...
T Consensus 159 ----------~~~------------------------------------------------YG~Ls~~~~---------- 170 (490)
T PRK14536 159 ----------FPS------------------------------------------------YGSLASAAV---------- 170 (490)
T ss_pred ----------ccc------------------------------------------------hhhhcCCCH----------
Confidence 111 111111100
Q ss_pred eEeCCccccCCCCCCceecCC-CCCcchHHHHHHcCCceeeeeCCCCccccCCCCCCCCCChhhHHHHHHHHHHHcCCcc
Q 001708 413 IICDAILVDPKFGTGAVKITP-AHDPNDFDVGKRHNLEFINIFTDDGKINSNGGLEFEGMPRFKAREAVNEALKKKGLYR 491 (1022)
Q Consensus 413 Ii~~~~~V~~~~GTG~V~~~P-aH~~~Dy~~~~~~~L~~i~iid~~G~~~e~~g~~f~G~~~~~ar~~vi~~L~~~gll~ 491 (1022)
-++..|.. |-..+ -++|.||.+++...
T Consensus 171 -------~~l~~g~~-v~~~~~K~np~DFaLWK~~~-------------------------------------------- 198 (490)
T PRK14536 171 -------EDLQAGAR-IEHDTNKRNPHDFVLWFTRS-------------------------------------------- 198 (490)
T ss_pred -------HHhhcCCc-CCCCCCCCCchhchhccccc--------------------------------------------
Confidence 00000100 00000 23444554443100
Q ss_pred ccccccccccccccCCCceecccccccceechHHHHHHHHhhhccCCCceEEeccccHHHHHHHHhhccCccceeccCCC
Q 001708 492 GAKDNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKLELIPRQYTAEWRRWLEAIRDWCVSRQLWWG 571 (1022)
Q Consensus 492 ~~~~~~~~~p~c~Rs~~~i~~~~~~QWFi~~~~l~~~al~~v~~~~~~~i~~~P~~~~~~~~~wl~~l~DWcISRQ~~WG 571 (1022)
...+.++++.-.||
T Consensus 199 ------------------------------------------------------------------~~~~~~~~W~SpWG 212 (490)
T PRK14536 199 ------------------------------------------------------------------KFENHALTWDSPWG 212 (490)
T ss_pred ------------------------------------------------------------------CCCCCCCcccCCCC
Confidence 00112234455799
Q ss_pred CccCcceeccCchhhhccCCCCcceEEecCHHHHHHHHhhhcCCCCcccccCCCcEEEEeccCccccccccCCCCChhhh
Q 001708 572 HQIPAWYVTLEDDELKELGSYNDHWIVARDEKEALAVANKKFSGKKFEMCQDPDVLDTWFSSGLFPLSVLGWPDDTDDLK 651 (1022)
Q Consensus 572 ~pIP~~~~~~~~~~~~~~~~~~~~w~~~~~~~ea~~~~~~~~~~~~~~~~~d~DvlDtWFdSgl~p~s~lg~p~~~~d~~ 651 (1022)
...|-|+++.+- +....+|
T Consensus 213 ~GRPGWHIECsa----------------------------------------------------Ms~~~lg--------- 231 (490)
T PRK14536 213 RGYPGWHIECSA----------------------------------------------------MSMKYLG--------- 231 (490)
T ss_pred CCCCChHHHHHH----------------------------------------------------HHHHHcC---------
Confidence 999999876431 0001112
Q ss_pred hcCCcCcccccccccchHHHHHHHHHhhhcCCCCceEEEeccceeCCCCccceecCCcccCcchhhccccchhHHHhhhc
Q 001708 652 AFYPTSVLETGHDILFFWVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLEGLHKRLEE 731 (1022)
Q Consensus 652 ~~~P~dl~~~G~Dil~fW~a~m~~~~~~l~~~~Pfk~V~~Hg~v~D~~GrKMSKSlGNvIdP~dvI~g~~l~~l~~~l~~ 731 (1022)
-..|++..|.|++|+|.-..++.+.+++|+ ||-++++|+..+..+|+|||||+||+|++.|+++
T Consensus 232 --~~~DIH~GG~DliFPHHeneiAqs~a~~g~-~~~~~w~h~g~l~~~g~KMSKSlGN~itl~dll~------------- 295 (490)
T PRK14536 232 --EQCDIHIGGVDHIRVHHTNEIAQCEAATGK-PWVRYWLHHEFLLMNKGKMSKSAGQFLTLSSLQE------------- 295 (490)
T ss_pred --CceeEEeccccCCCcchhhHHHHHHHhcCC-CcceEEEEcCEEeecCccccccCCCcccHHHHHh-------------
Confidence 023799999999999999999999988886 8899999999888999999999999999999998
Q ss_pred CCCChHHHHHHHhcccCCCCCCCCC-CCchHHHHHHHhccCCCcccccchhhhHHHHHHHHHHHHHHHHHHhhcCCCCCC
Q 001708 732 GNLDPKELEVAKKGQKADFPNGIPE-CGTDALRFALVSYTAQSDKINLDIQRVVGYRQWCNKLWNAVRFSMSKLGEGFVP 810 (1022)
Q Consensus 732 ~nl~~~e~~~a~~~~~~~~~~~i~~-~GaDaLR~~L~~~~~~~~Dinf~~~~~~~~r~f~nkl~N~~rf~l~~l~~~~~p 810 (1022)
+ |+++++||++++ +...++++|+.+.+...++-+++|.|++.-+....... .+
T Consensus 296 ------------------------~g~~~~alR~~lls-~~yr~~l~Fs~e~l~~a~~~~~rl~~~~~~~~~~~~~~-~~ 349 (490)
T PRK14536 296 ------------------------KGFQPLDYRFFLLG-GHYRSQLAFSWEALKTAKAARRSLVRRVARVVDAARAT-TG 349 (490)
T ss_pred ------------------------cCCCHHHHHHHHHh-CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhcc-cc
Confidence 5 899999999987 77788999999999998888888888776543222110 00
Q ss_pred CCCCCC-CC-CChhhHHHHHHHHHHHHHHHhhhh-cCCHHHHHHHHHHHH
Q 001708 811 PLKLHP-HN-LPFSCKWILSVLNKAISRTASSLN-SYEFSDAASTVYSWW 857 (1022)
Q Consensus 811 ~~~~~~-~~-~~~~D~wil~~L~~~~~~v~~a~e-~~~f~~a~~~i~~f~ 857 (1022)
...... .. ....+.-....+..+...+.++|+ ++++..|+..|++++
T Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~al~dDlntp~Al~~l~~~~ 399 (490)
T PRK14536 350 SVRGTLAECAAERVAESRASESELLLTDFRAALEDDFSTPKALSELQKLV 399 (490)
T ss_pred cccccccccccccccchhhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 000000 00 000000011234556678888885 599999999999985
No 52
>PLN02946 cysteine-tRNA ligase
Probab=99.97 E-value=7e-31 Score=309.45 Aligned_cols=360 Identities=17% Similarity=0.172 Sum_probs=256.4
Q ss_pred cEEEECCCCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeeeeeccCCccChhHHHHHHHHHHHHhCCCccccChHHHHHH
Q 001708 176 SFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSE 255 (1022)
Q Consensus 176 ~f~i~~pPPy~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG~D~~Glp~q~~vEk~l~~~~~~~~~~~g~e~f~~~ 255 (1022)
..++|- |+|-|.+|||||++++..|++.||.|+.||+|.|+.|+|.||-+|...+++ .|+++
T Consensus 82 ~~Y~CG--pTvYd~~HIGhaR~~V~~Dvl~R~Lr~~Gy~V~~V~niTDiDDKIi~~A~~-----~g~~~----------- 143 (557)
T PLN02946 82 GMYVCG--VTAYDLSHIGHARVYVTFDVLYRYLKHLGYEVRYVRNFTDVDDKIIARANE-----LGEDP----------- 143 (557)
T ss_pred eEEEeC--CccCCCCccccchhhHHHHHHHHHHHhcCCcEEEEECCCCccCHHHHHHHH-----cCCCH-----------
Confidence 455553 788899999999999999999999999999999999999999998777653 57765
Q ss_pred HHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHHHcCcEEEcceeeeecCCCCccccccccccccC
Q 001708 256 VWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDLRLVNWDCVLRTAISDIEVDYVDI 335 (1022)
Q Consensus 256 ~~~~~~~~~~~i~~ql~rlG~s~DW~r~~~T~d~~~~~~v~~~F~~L~ekGlIyr~~~~V~W~p~~~TaLsd~EVe~~~~ 335 (1022)
+++++.|.+.+.+.|++||+. + ..+.|...+|...+++++.+|.++|++|.+..-|+||+..
T Consensus 144 -~ela~~y~~~f~~d~~~LnI~-~--p~~~pratehi~~ii~~i~~Li~kG~aY~~~g~VYFdv~~-------------- 205 (557)
T PLN02946 144 -ISLSRRYCEEFLSDMAYLHCL-P--PSVEPRVSDHIPQIIDMIKQILDNGCAYRVDGDVYFSVDK-------------- 205 (557)
T ss_pred -HHHHHHHHHHHHHHHHHCCCC-C--CCeecCcchhHHHHHHHHHHHHHCCCEEEECCeEEEecCc--------------
Confidence 477899999999999999988 3 4677888899999999999999999999999999999752
Q ss_pred CCceEEeecCccccccceeeEeEeeecCCCcceEEEeeccccccccCcEEEEcCCccccccccCCeeecCCCCCccceEe
Q 001708 336 PKREMRNVPGYEKQVEFGVLTSFAYPLEGGLGEIVVATTRVETMLGDTAIAIHPEDARYSHLHGKFAIHPFNGRKIPIIC 415 (1022)
Q Consensus 336 ~~~t~~~vp~y~~~~e~g~l~~~~y~l~~~~~~l~v~TTrPeTl~g~~avaV~P~d~ry~~L~G~~~~~P~~~~~~pIi~ 415 (1022)
+|. ||. |.|..+
T Consensus 206 -------f~~------YG~------------------------------------------Ls~~~l------------- 217 (557)
T PLN02946 206 -------FPE------YGK------------------------------------------LSGRKL------------- 217 (557)
T ss_pred -------chh------hhh------------------------------------------cCCCCh-------------
Confidence 111 122 222110
Q ss_pred CCccccCCCCCCceecCC-CCCcchHHHHHHcCCceeeeeCCCCccccCCCCCCCCCChhhHHHHHHHHHHHcCCccccc
Q 001708 416 DAILVDPKFGTGAVKITP-AHDPNDFDVGKRHNLEFINIFTDDGKINSNGGLEFEGMPRFKAREAVNEALKKKGLYRGAK 494 (1022)
Q Consensus 416 ~~~~V~~~~GTG~V~~~P-aH~~~Dy~~~~~~~L~~i~iid~~G~~~e~~g~~f~G~~~~~ar~~vi~~L~~~gll~~~~ 494 (1022)
-++..|.. |...+ -.+|.||.++|+.+
T Consensus 218 ----~~l~~g~r-v~~~~~K~np~DFaLWK~~k----------------------------------------------- 245 (557)
T PLN02946 218 ----EDNRAGER-VAVDSRKKNPADFALWKAAK----------------------------------------------- 245 (557)
T ss_pred ----hHhhcCCC-CCcccccCCccccceeccCC-----------------------------------------------
Confidence 00011111 00001 34566665554210
Q ss_pred cccccccccccCCCceecccccccceechHHHHHHHHhhhccCCCceEEeccccHHHHHHHHhhccCccceeccCCCCcc
Q 001708 495 DNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKLELIPRQYTAEWRRWLEAIRDWCVSRQLWWGHQI 574 (1022)
Q Consensus 495 ~~~~~~p~c~Rs~~~i~~~~~~QWFi~~~~l~~~al~~v~~~~~~~i~~~P~~~~~~~~~wl~~l~DWcISRQ~~WG~pI 574 (1022)
.|++.| .--||.--
T Consensus 246 -------------------------------------------~ge~~W-----------------------~SPWG~GR 259 (557)
T PLN02946 246 -------------------------------------------EGEPFW-----------------------DSPWGPGR 259 (557)
T ss_pred -------------------------------------------CCCCCc-----------------------cCCCCCCC
Confidence 011111 12588888
Q ss_pred CcceeccCchhhhccCCCCcceEEecCHHHHHHHHhhhcCCCCcccccCCCcEEEEeccCccccccccCCCCChhhhhcC
Q 001708 575 PAWYVTLEDDELKELGSYNDHWIVARDEKEALAVANKKFSGKKFEMCQDPDVLDTWFSSGLFPLSVLGWPDDTDDLKAFY 654 (1022)
Q Consensus 575 P~~~~~~~~~~~~~~~~~~~~w~~~~~~~ea~~~~~~~~~~~~~~~~~d~DvlDtWFdSgl~p~s~lg~p~~~~d~~~~~ 654 (1022)
|.|+++++- +-...+| .
T Consensus 260 PGWHIECSa----------------------------------------------------Ms~~~lG-----------~ 276 (557)
T PLN02946 260 PGWHIECSA----------------------------------------------------MSAAYLG-----------H 276 (557)
T ss_pred CcHHHHHHH----------------------------------------------------HHHHHcC-----------C
Confidence 999986431 0011122 1
Q ss_pred CcCcccccccccchHHHHHHHHHhhhcCCCCceEEEeccceeCCCCccceecCCcccCcchhhccccchhHHHhhhcCCC
Q 001708 655 PTSVLETGHDILFFWVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLEGLHKRLEEGNL 734 (1022)
Q Consensus 655 P~dl~~~G~Dil~fW~a~m~~~~~~l~~~~Pfk~V~~Hg~v~D~~GrKMSKSlGNvIdP~dvI~g~~l~~l~~~l~~~nl 734 (1022)
+.|+|..|.|++|-+.-.-++.+.+..|....+.-+.||||. .+|+|||||+||+|++.|+++
T Consensus 277 ~~DIH~GG~DL~FPHHENEiAQsea~~g~~~a~yW~H~G~v~-~~G~KMSKSlGN~itl~dll~---------------- 339 (557)
T PLN02946 277 SFDIHGGGMDLVFPHHENEIAQSCAACCDSNISYWIHNGFVT-VDSEKMSKSLGNFFTIRQVID---------------- 339 (557)
T ss_pred CeeEeccccccCCCcccchHHHHHHHhCCCCCceeeEeeEEE-eCCCCcCCcCCCcCCHHHHHH----------------
Confidence 348999999999998888888888877764333444558887 899999999999999999998
Q ss_pred ChHHHHHHHhcccCCCCCCCCCCCchHHHHHHHhccCCCcccccchhhhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCC
Q 001708 735 DPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLDIQRVVGYRQWCNKLWNAVRFSMSKLGEGFVPPLKL 814 (1022)
Q Consensus 735 ~~~e~~~a~~~~~~~~~~~i~~~GaDaLR~~L~~~~~~~~Dinf~~~~~~~~r~f~nkl~N~~rf~l~~l~~~~~p~~~~ 814 (1022)
+||+|++|||+++ +...++++|+.+.+....+-+.+++++++.+...+........
T Consensus 340 ---------------------~y~~dalR~~lLs-~hyr~~l~fs~e~L~~a~~~l~~l~~~~~~~~~~l~~~~~~~~-- 395 (557)
T PLN02946 340 ---------------------LYHPLALRLFLLG-THYRSPINYSDVQLESASERIFYIYQTLHDCEESLQQHDSTFE-- 395 (557)
T ss_pred ---------------------hcCccceeeeeec-cCCCCCcEecHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccc--
Confidence 8999999999987 5678899999999988888777888887765433321100000
Q ss_pred CCCCCChhhHHHHHHHHHHHHHHHhhhh-cCCHHHHHHHHHHHHHhhhhHHHHH
Q 001708 815 HPHNLPFSCKWILSVLNKAISRTASSLN-SYEFSDAASTVYSWWQYQFCDVFIE 867 (1022)
Q Consensus 815 ~~~~~~~~D~wil~~L~~~~~~v~~a~e-~~~f~~a~~~i~~f~~~~l~~~Yle 867 (1022)
... .+.-+...+..+...+.++|+ +++...|+..|++++ ...|.++.
T Consensus 396 ---~~~-~~~~~~~~~~~~~~~f~~Al~DDlntp~Al~~l~~~v--k~~N~~~~ 443 (557)
T PLN02946 396 ---KDS-VPPDTLNCINKFHDEFVTSMSDDLHTPVALAALSEPL--KTINDLLH 443 (557)
T ss_pred ---ccc-cchhhHHHHHHHHHHHHHHHHhccChHHHHHHHHHHH--HHHHHHhh
Confidence 000 111123345567788888885 599999999999995 45666664
No 53
>PRK14535 cysS cysteinyl-tRNA synthetase; Provisional
Probab=99.97 E-value=2.4e-30 Score=305.88 Aligned_cols=334 Identities=20% Similarity=0.298 Sum_probs=245.2
Q ss_pred CCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeeeeeccCCccChhHHHHHHHHHHHHhCCCccccChHHHHHHHHHHHHH
Q 001708 183 PPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWKWKDE 262 (1022)
Q Consensus 183 PPy~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG~D~~Glp~q~~vEk~l~~~~~~~~~~~g~e~f~~~~~~~~~~ 262 (1022)
=|+|-+.+|||||++++..|++.||.|+.||+|.|+.|+|.||-+|...+++ .|+++. ++++.
T Consensus 255 GPTVYd~~HIGHaRt~V~~DVL~R~Lr~~Gy~V~fV~NiTD~DDKII~~A~e-----~G~sp~------------ela~~ 317 (699)
T PRK14535 255 GMTVYDYCHLGHARVMVVFDMIARWLRECGYPLTYVRNITDIDDKIIARAAE-----NGETIG------------ELTAR 317 (699)
T ss_pred CCcCCCCCcccchhHHHHHHHHHHHHHHcCCceEEEeCCcccchHHHHHHHH-----cCCCHH------------HHHHH
Confidence 3677799999999999999999999999999999999999999998777653 577754 77889
Q ss_pred HHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHHHcCcEEEcce-eeeecCCCCccccccccccccCCCceEE
Q 001708 263 YGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDLR-LVNWDCVLRTAISDIEVDYVDIPKREMR 341 (1022)
Q Consensus 263 ~~~~i~~ql~rlG~s~DW~r~~~T~d~~~~~~v~~~F~~L~ekGlIyr~~~-~V~W~p~~~TaLsd~EVe~~~~~~~t~~ 341 (1022)
|.+.+.+.|++||++.| .++|...+|...+++++.+|.++|++|.+.. -|+||+++-
T Consensus 318 y~~~F~~d~~~LnI~~p---~~~praTeHI~~ii~lI~~LidkG~AYe~~~gsVYFdV~~f------------------- 375 (699)
T PRK14535 318 FIQAMHEDADALGVLRP---DIEPKATENIPQMIAMIETLIQNGKAYPAANGDVYYAVREF------------------- 375 (699)
T ss_pred HHHHHHHHHHHcCCCCC---cEeeCccchHHHHHHHHHHHHHCCCEEEeCCCCEEEecccc-------------------
Confidence 99999999999999988 3577788999999999999999999998743 688887531
Q ss_pred eecCccccccceeeEeEeeecCCCcceEEEeeccccccccCcEEEEcCCccccccccCCeeecCCCCCccceEeCCcccc
Q 001708 342 NVPGYEKQVEFGVLTSFAYPLEGGLGEIVVATTRVETMLGDTAIAIHPEDARYSHLHGKFAIHPFNGRKIPIICDAILVD 421 (1022)
Q Consensus 342 ~vp~y~~~~e~g~l~~~~y~l~~~~~~l~v~TTrPeTl~g~~avaV~P~d~ry~~L~G~~~~~P~~~~~~pIi~~~~~V~ 421 (1022)
|. +| .|.|... -+
T Consensus 376 --~~------YG------------------------------------------~LS~~~~-----------------~~ 388 (699)
T PRK14535 376 --AA------YG------------------------------------------QLSGKSL-----------------DD 388 (699)
T ss_pred --cc------cc------------------------------------------cccCCCh-----------------HH
Confidence 11 12 1111100 00
Q ss_pred CCCCCCceecCC-CCCcchHHHHHHcCCceeeeeCCCCccccCCCCCCCCCChhhHHHHHHHHHHHcCCccccccccccc
Q 001708 422 PKFGTGAVKITP-AHDPNDFDVGKRHNLEFINIFTDDGKINSNGGLEFEGMPRFKAREAVNEALKKKGLYRGAKDNEMRL 500 (1022)
Q Consensus 422 ~~~GTG~V~~~P-aH~~~Dy~~~~~~~L~~i~iid~~G~~~e~~g~~f~G~~~~~ar~~vi~~L~~~gll~~~~~~~~~~ 500 (1022)
+..|.. |-..+ -++|.||.++|+.+ .
T Consensus 389 l~~g~r-ve~d~~Krnp~DFaLWK~sk----------------~------------------------------------ 415 (699)
T PRK14535 389 LRAGER-VEVDGFKRDPLDFVLWKAAK----------------A------------------------------------ 415 (699)
T ss_pred hcCCCc-cccccccCCccccceeccCC----------------C------------------------------------
Confidence 000110 00001 35566666654310 0
Q ss_pred cccccCCCceecccccccceechHHHHHHHHhhhccCCCceEEeccccHHHHHHHHhhccCccceeccCCCCccCcceec
Q 001708 501 GLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKLELIPRQYTAEWRRWLEAIRDWCVSRQLWWGHQIPAWYVT 580 (1022)
Q Consensus 501 p~c~Rs~~~i~~~~~~QWFi~~~~l~~~al~~v~~~~~~~i~~~P~~~~~~~~~wl~~l~DWcISRQ~~WG~pIP~~~~~ 580 (1022)
|+.. | .--||---|.|+++
T Consensus 416 --------------------------------------Gep~-------------------W----~SPWG~GRPGWHIE 434 (699)
T PRK14535 416 --------------------------------------GEPA-------------------W----ESPWGNGRPGWHIE 434 (699)
T ss_pred --------------------------------------CCCC-------------------c----cCCCCCCCCchHHH
Confidence 1111 1 12588888999876
Q ss_pred cCchhhhccCCCCcceEEecCHHHHHHHHhhhcCCCCcccccCCCcEEEEeccCccccccccCCCCChhhhhcCCcCccc
Q 001708 581 LEDDELKELGSYNDHWIVARDEKEALAVANKKFSGKKFEMCQDPDVLDTWFSSGLFPLSVLGWPDDTDDLKAFYPTSVLE 660 (1022)
Q Consensus 581 ~~~~~~~~~~~~~~~w~~~~~~~ea~~~~~~~~~~~~~~~~~d~DvlDtWFdSgl~p~s~lg~p~~~~d~~~~~P~dl~~ 660 (1022)
.+- +....+| -+.|++.
T Consensus 435 CSA----------------------------------------------------Ms~~~LG-----------~~~DIHg 451 (699)
T PRK14535 435 CSA----------------------------------------------------MSENLFG-----------DTFDIHG 451 (699)
T ss_pred HHH----------------------------------------------------HHHHHcC-----------CcceeEC
Confidence 430 0011122 1347899
Q ss_pred ccccccchHHHHHHHHHhhhcCCC---------------CceEEEec-cceeCCCCccceecCCcccCcchhhccccchh
Q 001708 661 TGHDILFFWVARMVMLGIKLGGEV---------------PFTKVYLH-PMIRDAHGRKMSKSLGNVIDPLEVINGISLEG 724 (1022)
Q Consensus 661 ~G~Dil~fW~a~m~~~~~~l~~~~---------------Pfk~V~~H-g~v~D~~GrKMSKSlGNvIdP~dvI~g~~l~~ 724 (1022)
.|.|++|.+.-.-++.+.+.+|+. ||-+.++| |||. .+|+|||||+||+|+|.++++
T Consensus 452 GG~DLiFPHHENEiAQseA~~g~~~~~~~~~~~~~~~~~~~aryWmHnG~V~-vdGeKMSKSLGN~it~~dlLe------ 524 (699)
T PRK14535 452 GGADLQFPHHENEIAQSVGATGHTCGHHHAQTHHGQSIASHVKYWLHNGFIR-VDGEKMSKSLGNFFTIREVLK------ 524 (699)
T ss_pred CccccCCCCCccHHHHHHHhhCCCcccccccccccccccccccEEEECCeEe-eCCCccCCCCCCcCCHHHHHH------
Confidence 999999999999999888887762 57777776 6665 899999999999999999998
Q ss_pred HHHhhhcCCCChHHHHHHHhcccCCCCCCCCCCCchHHHHHHHhccCCCcccccchhhhHHHHHHHHHHHHHHHHHHhhc
Q 001708 725 LHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLDIQRVVGYRQWCNKLWNAVRFSMSKL 804 (1022)
Q Consensus 725 l~~~l~~~nl~~~e~~~a~~~~~~~~~~~i~~~GaDaLR~~L~~~~~~~~Dinf~~~~~~~~r~f~nkl~N~~rf~l~~l 804 (1022)
+||+|++|||+++ +...++++|+.+.++++++.+++++++++-+.
T Consensus 525 -------------------------------~ygpdalRl~lLs-shYRspL~fS~e~Le~Ak~~l~Rl~~~l~~~~--- 569 (699)
T PRK14535 525 -------------------------------QYDPEVVRFFILR-AHYRSPLNYSDAHLDDAKGALTRLYTTLKNTP--- 569 (699)
T ss_pred -------------------------------hCCHHHHHHHHHc-CCCCCCCCcCHHHHHHHHHHHHHHHHHHHhhh---
Confidence 8999999999997 66888999999999999999999998875331
Q ss_pred CCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHhhhh-cCCHHHHHHHHHHHH
Q 001708 805 GEGFVPPLKLHPHNLPFSCKWILSVLNKAISRTASSLN-SYEFSDAASTVYSWW 857 (1022)
Q Consensus 805 ~~~~~p~~~~~~~~~~~~D~wil~~L~~~~~~v~~a~e-~~~f~~a~~~i~~f~ 857 (1022)
. ..+ . ....+..+.+.+.++|+ ++++..|+..|++++
T Consensus 570 -~-~~~----------~----~~~~l~~~~~~f~~AL~DDlntp~Ala~L~~lv 607 (699)
T PRK14535 570 -A-AEF----------M----LSENVNDYTRRFYAAMNDDFGTVEAVAVLFELA 607 (699)
T ss_pred -h-ccc----------h----hhhhHHHHHHHHHHHHhhccChHHHHHHHHHHH
Confidence 0 000 0 11234456677888885 599999999999985
No 54
>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase. Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.97 E-value=2.9e-30 Score=273.98 Aligned_cols=94 Identities=20% Similarity=0.250 Sum_probs=82.1
Q ss_pred cccCCCCCCCcEEEECCCCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeeeeeccCCccChhHHHHHHHHHHHHhCCCcc
Q 001708 166 FIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRH 245 (1022)
Q Consensus 166 f~~~~~~~k~~f~i~~pPPy~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG~D~~Glp~q~~vEk~l~~~~~~~~~ 245 (1022)
|+|.. +++.+++++.|.|| |.+||||++++++.|+++||+||+|++|+|+.|+|.||.||+..+++ .|+++
T Consensus 13 ~~p~~-~~~~~~y~~gpt~y--~~~HiGH~r~~v~~Dvl~R~lr~~G~~V~~~~g~dd~g~ki~~~A~~-----~g~~p- 83 (213)
T cd00672 13 FVPLN-PGLVTMYVCGPTVY--DYAHIGHARTYVVFDVLRRYLEDLGYKVRYVQNITDIDDKIIKRARE-----EGLSW- 83 (213)
T ss_pred eecCC-CCCceEEEeCCccC--CCcccccchhHHHHHHHHHHHHhcCCeeEEEeecCCCCCHHHHHHHH-----cCCCH-
Confidence 44433 35668999998888 78999999999999999999999999999999999999999888875 46664
Q ss_pred ccChHHHHHHHHHHHHHHHHHHHHHHHHhcccc-c
Q 001708 246 DIGREQFVSEVWKWKDEYGGTILRQQRRLGASL-D 279 (1022)
Q Consensus 246 ~~g~e~f~~~~~~~~~~~~~~i~~ql~rlG~s~-D 279 (1022)
++|++++.+.++++|++||++. |
T Consensus 84 -----------~e~~~~~~~~f~~~~~~l~i~~~d 107 (213)
T cd00672 84 -----------KEVADYYTKEFFEDMKALNVLPPD 107 (213)
T ss_pred -----------HHHHHHHHHHHHHHHHHcCCCCCC
Confidence 4889999999999999999988 5
No 55
>PRK01611 argS arginyl-tRNA synthetase; Reviewed
Probab=99.96 E-value=3.5e-28 Score=290.05 Aligned_cols=118 Identities=24% Similarity=0.260 Sum_probs=102.6
Q ss_pred CCCcEEEECCCCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeeeeeccCCccChhHHHHHHHHHHHHhCCCccccChHHH
Q 001708 173 SKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQF 252 (1022)
Q Consensus 173 ~k~~f~i~~pPPy~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG~D~~Glp~q~~vEk~l~~~~~~~~~~~g~e~f 252 (1022)
.+++++|..++|||||.|||||+++.++.|+++|+.|+.||+|.++.|+|++|.++...++... .
T Consensus 109 ~~~~v~Ie~~spnp~g~lHiGH~R~~iigD~laR~lr~~G~~V~~~~~i~D~G~qi~~~a~~~~-~-------------- 173 (507)
T PRK01611 109 KGKKVVVEYVSANPTGPLHVGHLRSAVIGDALARILEFAGYDVTREYYVNDAGTQIGMLIASLE-L-------------- 173 (507)
T ss_pred CCCEEEEEecCCCCCCCCcCCchHHHHHHHHHHHHHHHcCCcEEEEeeeCCccHHHHHHHHHHH-H--------------
Confidence 3458999999999999999999999999999999999999999999999999999877765421 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHHHcCcEE
Q 001708 253 VSEVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIY 309 (1022)
Q Consensus 253 ~~~~~~~~~~~~~~i~~ql~rlG~s~DW~r~~~T~d~~~~~~v~~~F~~L~ekGlIy 309 (1022)
...++++.+.+.+++++++||+.+| ..+.+.+..+...+.+++.+|.++|++|
T Consensus 174 --~~~~~~~~~~~~~~~~l~~LgI~~D--~~~~es~~~~~~~~~~~~~~L~~~G~~y 226 (507)
T PRK01611 174 --LWRKAVDISLDEIKEDLDRLGVHFD--VWFSESELYYNGKVDEVVEDLKEKGLLY 226 (507)
T ss_pred --HHHHHHHHHHHHHHHHHHHcCCeee--EEeecCcchhcchHHHHHHHHHHCCCEE
Confidence 2347788999999999999999998 3344566666778999999999999999
No 56
>PRK14534 cysS cysteinyl-tRNA synthetase; Provisional
Probab=99.96 E-value=5e-28 Score=281.43 Aligned_cols=355 Identities=15% Similarity=0.170 Sum_probs=245.9
Q ss_pred EECCCCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeeee---------eccC-CccChhHHHHHHHHHHHHhCCCccccC
Q 001708 179 IVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALW---------VPGM-DHAGIATQVVVEKKLMRERKLTRHDIG 248 (1022)
Q Consensus 179 i~~pPPy~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~---------~pG~-D~~Glp~q~~vEk~l~~~~~~~~~~~g 248 (1022)
|..-=|+|-..+||||+++++..|++.||.|++||+|.| +.|. |+||-+|...++ ++|+++.
T Consensus 24 mY~CGpTVYd~~HiGh~r~~v~~Dvl~R~l~~~G~~V~~v~NiTDIghltg~~D~gddKIi~~A~-----~~g~~~~--- 95 (481)
T PRK14534 24 VYACGPTVYNYAHIGNFRTYIFEDLLIKSLRLLKYNVNYAMNITDIGHLTGDFDDGEDKVVKAAR-----ERGLTVY--- 95 (481)
T ss_pred EEeCCCCCCCCCCccchhHHHHHHHHHHHHHHcCCceEEEEeccccccccCCccCCCcHHHHHHH-----HcCCCHH---
Confidence 333347888999999999999999999999999999999 7899 777888876664 3577754
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHHHcCcEEEcceeeeecCCCCcccccc
Q 001708 249 REQFVSEVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDLRLVNWDCVLRTAISDI 328 (1022)
Q Consensus 249 ~e~f~~~~~~~~~~~~~~i~~ql~rlG~s~DW~r~~~T~d~~~~~~v~~~F~~L~ekGlIyr~~~~V~W~p~~~TaLsd~ 328 (1022)
++++.|.+.+.+.+++||++.| ..+.| .++|...+++++.+|.++|++|....-|+||+.+-
T Consensus 96 ---------e~a~~~~~~f~~d~~~Lni~~~--~~~p~-atehi~~~i~~i~~L~~kG~aY~~~~~vyFdv~~~------ 157 (481)
T PRK14534 96 ---------EISRFFTEAFFDDCKKLNIVYP--DKVLV-ASEYIPIMIEVVKVLEENGFTYFVNGNVYFDTSCF------ 157 (481)
T ss_pred ---------HHHHHHHHHHHHHHHHcCCCCC--ceecC-ccchHHHHHHHHHHHHHCCCEEEECCeEEEecccc------
Confidence 7789999999999999999988 44444 57999999999999999999999999999998641
Q ss_pred ccccccCCCceEEeecCccccccceeeEeEeeecCCCcceEEEeeccccccccCcEEEEcCCccccccccCCeeecCCCC
Q 001708 329 EVDYVDIPKREMRNVPGYEKQVEFGVLTSFAYPLEGGLGEIVVATTRVETMLGDTAIAIHPEDARYSHLHGKFAIHPFNG 408 (1022)
Q Consensus 329 EVe~~~~~~~t~~~vp~y~~~~e~g~l~~~~y~l~~~~~~l~v~TTrPeTl~g~~avaV~P~d~ry~~L~G~~~~~P~~~ 408 (1022)
|+ |..|.|...
T Consensus 158 ---------------~~------------------------------------------------YG~ls~~~l------ 168 (481)
T PRK14534 158 ---------------KS------------------------------------------------YGQMAGINL------ 168 (481)
T ss_pred ---------------cc------------------------------------------------hhhhcCCCH------
Confidence 11 112222110
Q ss_pred CccceEeCCccccCC--CCCCceecCC-CCCcchHHHHHHcCCceeeeeCCCCccccCCCCCCCCCChhhHHHHHHHHHH
Q 001708 409 RKIPIICDAILVDPK--FGTGAVKITP-AHDPNDFDVGKRHNLEFINIFTDDGKINSNGGLEFEGMPRFKAREAVNEALK 485 (1022)
Q Consensus 409 ~~~pIi~~~~~V~~~--~GTG~V~~~P-aH~~~Dy~~~~~~~L~~i~iid~~G~~~e~~g~~f~G~~~~~ar~~vi~~L~ 485 (1022)
-++. .|++ |...+ -++|.||.+++.
T Consensus 169 -----------~~l~~~~~~~-v~~~~~K~np~DFaLWK~---------------------------------------- 196 (481)
T PRK14534 169 -----------NDFKDMSVSR-VEIDKSKRNKSDFVLWFT---------------------------------------- 196 (481)
T ss_pred -----------HHHhhhccCc-CCcccCCCCcccchhcCc----------------------------------------
Confidence 0000 0110 00000 223333333220
Q ss_pred HcCCccccccccccccccccCCCceecccccccceechHHHHHHHHhhhccCCCceEEeccccHHHHHHHHhhccCccce
Q 001708 486 KKGLYRGAKDNEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKLELIPRQYTAEWRRWLEAIRDWCVS 565 (1022)
Q Consensus 486 ~~gll~~~~~~~~~~p~c~Rs~~~i~~~~~~QWFi~~~~l~~~al~~v~~~~~~~i~~~P~~~~~~~~~wl~~l~DWcIS 565 (1022)
. +.+++..++
T Consensus 197 ------------------------------------------------------------~----------~~~~~~~~~ 206 (481)
T PRK14534 197 ------------------------------------------------------------N----------SKFKDQEMK 206 (481)
T ss_pred ------------------------------------------------------------C----------CcCCCCCCe
Confidence 0 012344456
Q ss_pred eccCCCCccCcceeccCchhhhccCCCCcceEEecCHHHHHHHHhhhcCCCCcccccCCCcEEEEeccCccccccccCCC
Q 001708 566 RQLWWGHQIPAWYVTLEDDELKELGSYNDHWIVARDEKEALAVANKKFSGKKFEMCQDPDVLDTWFSSGLFPLSVLGWPD 645 (1022)
Q Consensus 566 RQ~~WG~pIP~~~~~~~~~~~~~~~~~~~~w~~~~~~~ea~~~~~~~~~~~~~~~~~d~DvlDtWFdSgl~p~s~lg~p~ 645 (1022)
+.-.||.--|-|+++.+- +-...+|
T Consensus 207 w~spWG~GrPgWHiECsa----------------------------------------------------m~~~~lg--- 231 (481)
T PRK14534 207 WDSPWGFGYPSWHLECAA----------------------------------------------------MNLEYFK--- 231 (481)
T ss_pred ecCCCCCcCCcHHHHHHH----------------------------------------------------HHHHHcC---
Confidence 677899999999876430 0001111
Q ss_pred CChhhhhcCCcCcccccccccchHHHHHHHHHhhhcCCCCceEEEeccceeCCCCccceecCCcccCcchhhccccchhH
Q 001708 646 DTDDLKAFYPTSVLETGHDILFFWVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLEGL 725 (1022)
Q Consensus 646 ~~~d~~~~~P~dl~~~G~Dil~fW~a~m~~~~~~l~~~~Pfk~V~~Hg~v~D~~GrKMSKSlGNvIdP~dvI~g~~l~~l 725 (1022)
-..|++..|.|++|++.-..++++.+.+|+ ||-+.++|+-.+..+|+|||||+||+|+..|+++.
T Consensus 232 --------~~~DIH~GG~DliFPHHene~Aqs~a~~g~-~~~~~W~H~g~l~~~g~KMSKSlGN~i~l~dll~~------ 296 (481)
T PRK14534 232 --------STLDIHLGGVDHIGVHHINEIAIAECYLNK-KWCDMFVHGEFLIMEYEKMSKSNNNFITIKDLEDQ------ 296 (481)
T ss_pred --------CcceEEecccccCCCcchhHHHHHhhhcCC-CcceEEEEecEEEecCceecccCCCcccHHHHHhc------
Confidence 124789999999999999999998888876 66667776644458999999999999999999971
Q ss_pred HHhhhcCCCChHHHHHHHhcccCCCCCCCCCCCchHHHHHHHhccCCCcccccchhhhHHHHHHHHHHHHHHHHHHhhcC
Q 001708 726 HKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLDIQRVVGYRQWCNKLWNAVRFSMSKLG 805 (1022)
Q Consensus 726 ~~~l~~~nl~~~e~~~a~~~~~~~~~~~i~~~GaDaLR~~L~~~~~~~~Dinf~~~~~~~~r~f~nkl~N~~rf~l~~l~ 805 (1022)
.++++++||++++ +....+++|+++.++..++-+++|+++++.+...+.
T Consensus 297 ------------------------------~~~~~alR~~lls-~~yr~~l~Fs~e~l~~a~~~~~~~~~~~~~~~~~~~ 345 (481)
T PRK14534 297 ------------------------------GFSPLDFRYFCLT-AHYRTQLKFTFNNLKACKIARENMLNKLTYFYSSLD 345 (481)
T ss_pred ------------------------------CCChhHHHHHHHh-CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 2889999999875 667789999999999999888899988775433331
Q ss_pred CCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHhhhh-cCCHHHHHHHHHHHH
Q 001708 806 EGFVPPLKLHPHNLPFSCKWILSVLNKAISRTASSLN-SYEFSDAASTVYSWW 857 (1022)
Q Consensus 806 ~~~~p~~~~~~~~~~~~D~wil~~L~~~~~~v~~a~e-~~~f~~a~~~i~~f~ 857 (1022)
. .... .......+ .....+..+...+.++|+ +++...|+..|++++
T Consensus 346 ~-~~~~-~~~~~~~~----~~~~~~~~~~~~f~~Al~DDlNtp~Al~~l~~~~ 392 (481)
T PRK14534 346 Q-FDLN-LLNKDLEN----IEFSLEKEYYDSFLEKIAFDLNIPQGLALLWDII 392 (481)
T ss_pred h-cccc-cccccccc----chhhhHHHHHHHHHHHHhhcCChHHHHHHHHHHH
Confidence 1 0000 00000000 000112344567778884 599999999999985
No 57
>cd07961 Anticodon_Ia_Ile_ABEc Anticodon-binding domain of archaeal, bacterial, and eukaryotic cytoplasmic isoleucyl tRNA synthetases. This domain is found in isoleucyl tRNA synthetases (IleRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. This family includes bacterial, archaeal, and eukaryotic cytoplasmic members. IleRS catalyzes the transfer of isoleucine to the 3'-end of its tRNA.
Probab=99.95 E-value=2.3e-27 Score=246.96 Aligned_cols=179 Identities=30% Similarity=0.449 Sum_probs=149.7
Q ss_pred cchhhhHHHHH-HHHHHHHHHHHHHh--hcCCCCCCCCC-CCCCCCChhhHHHHHHHHHHHHHHHhhhhcCCHHHHHHHH
Q 001708 778 LDIQRVVGYRQ-WCNKLWNAVRFSMS--KLGEGFVPPLK-LHPHNLPFSCKWILSVLNKAISRTASSLNSYEFSDAASTV 853 (1022)
Q Consensus 778 f~~~~~~~~r~-f~nkl~N~~rf~l~--~l~~~~~p~~~-~~~~~~~~~D~wil~~L~~~~~~v~~a~e~~~f~~a~~~i 853 (1022)
|+.+.+++.++ |||||||++||+++ ++.+ +.|... .....++..|+||+++++++++.++++|++|+|+.|++.+
T Consensus 1 ~s~~~v~~~~~~f~~KlwN~~rf~l~~~~~~~-~~~~~~~~~~~~~~~~D~wil~~l~~~i~~~~~~~e~~~f~~a~~~l 79 (183)
T cd07961 1 FSEKGVREVVRKVLLPLWNAYRFFVTYANLDG-FDPGKDDDAVASLNVLDRWILSRLNSLIKEVTEEMEAYDLYTAVRAL 79 (183)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCCccccccccCchhHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 56788999888 99999999999987 4433 544321 1223467899999999999999999999999999999999
Q ss_pred HHHHHhhhhHHHHHhhcccccCCCcccHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHhCCCCCCCCCCCCeeecc
Q 001708 854 YSWWQYQFCDVFIEAIKPYFAGDNPAFASERSAAQHVLWVCLETGLRLLHPFMPFVTEELWQRLPQPKGCATKESIMLCE 933 (1022)
Q Consensus 854 ~~f~~~~l~~~Yle~~K~~l~~~~~~~~~~r~~a~~~L~~~L~~~l~LL~PfmPfitEelwq~L~~~~~~~~~~SI~~~~ 933 (1022)
|.|++ .++++|++.+|+++++++.. ..++.++.+|..+++.+++||||||||+|||||++++...+ +..+||+.++
T Consensus 80 ~~f~~-~~~~~Y~e~~K~~~~~~~~~--~~~~~~~~~l~~~l~~ll~ll~P~~P~~aEElw~~l~~~~~-~~~~si~~~~ 155 (183)
T cd07961 80 LEFID-ELTNWYIRRNRKRFWGEEGD--DDKLAAYATLYEVLLTLSRLMAPFTPFITEEIYQNLRRELG-DAPESVHLLD 155 (183)
T ss_pred HHHHH-HhhhhHhhhchHHhcCCCCc--hhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhcC-CCCCceeeec
Confidence 99996 67799999999998765311 14667889999999999999999999999999999975211 1236899999
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q 001708 934 YPSAVEGWTDERAEFEMDLVESTVRCIR 961 (1022)
Q Consensus 934 ~P~~~~~~~~~~~e~~~~~v~~iv~~iR 961 (1022)
||.+++.+.|+.++..++.+++++.++|
T Consensus 156 wP~~~~~~~~~~~~~~~~~l~~~i~~~r 183 (183)
T cd07961 156 WPEVDESLIDEELEEAMELVREIVELGR 183 (183)
T ss_pred CCCCcccccCHHHHHHHHHHHHHHHhhC
Confidence 9999888889999999999999999887
No 58
>cd00674 LysRS_core_class_I catalytic core domain of class I lysyl tRNA synthetase. Class I lysyl tRNA synthetase (LysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The class I LysRS is found only in archaea and some bacteria and has evolved separately from class II LysRS, as the two do not share structural or sequence similarity.
Probab=99.95 E-value=6e-27 Score=264.31 Aligned_cols=124 Identities=15% Similarity=0.190 Sum_probs=98.6
Q ss_pred CCcEEEECCCCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeeeeeccCCcc--------ChhHHHHHHHHHHHHhCCCcc
Q 001708 174 KPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHA--------GIATQVVVEKKLMRERKLTRH 245 (1022)
Q Consensus 174 k~~f~i~~pPPy~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG~D~~--------Glp~q~~vEk~l~~~~~~~~~ 245 (1022)
+++|+|++|++ |||.+||||++.++..|+++||+||+|++|.|+.|+|.| |+|.+ +++. .|+...
T Consensus 18 ~~~~~v~tgi~-psG~~HIG~~~e~i~~D~i~R~lr~~G~~v~~v~~~Dd~d~lrKvp~~l~~~--~~~~----~G~pi~ 90 (353)
T cd00674 18 KEKYVVASGIS-PSGHIHIGNFREVITADLVARALRDLGFEVRLIYSWDDYDRLRKVPPNVPES--YEQY----IGMPLS 90 (353)
T ss_pred CCeEEEecCCC-CCCCcccCccHHHHHHHHHHHHHHHcCCCEEEEEEEcCCCcccccccchhhH--HHHh----cCccch
Confidence 45799999985 999999999999999999999999999999999999999 57643 4443 465544
Q ss_pred ccChHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhH-HHHHHHHHHHHHcCcEE
Q 001708 246 DIGREQFVSEVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRS-KAVTEAFVRLYKEGLIY 309 (1022)
Q Consensus 246 ~~g~e~f~~~~~~~~~~~~~~i~~ql~rlG~s~DW~r~~~T~d~~~~-~~v~~~F~~L~ekGlIy 309 (1022)
.+... | ..|.+|++.+...+++.|++||+++| .+.|++...+ .....++..|.+.+.|.
T Consensus 91 ~ip~p-~-g~~~~~~d~~~~~f~~~l~~lgi~~d---~~~~T~~y~~g~~~~~i~~~L~~~~~I~ 150 (353)
T cd00674 91 SVPDP-F-GCCESYAEHFERPFEESLEKLGIEVE---FISQSQMYKSGLYDENILIALEKRDEIM 150 (353)
T ss_pred hchhh-c-CCCHHHHHHHHHHHHHHHHHcCCeee---eeecCCchhhchHHHHHHHHHHHCChHH
Confidence 44322 2 23568999999999999999999999 3445454433 77888888898888775
No 59
>cd07960 Anticodon_Ia_Ile_BEm Anticodon-binding domain of bacterial and eukaryotic mitochondrial isoleucyl tRNA synthetases. This domain is found in isoleucyl tRNA synthetases (IleRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. This family includes bacterial and eukaryotic mitochondrial members. IleRS catalyzes the transfer of isoleucine to the 3'-end of its tRNA.
Probab=99.93 E-value=2.9e-25 Score=230.57 Aligned_cols=178 Identities=25% Similarity=0.432 Sum_probs=148.9
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCC-CCCCCChhhHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHH
Q 001708 778 LDIQRVVGYRQWCNKLWNAVRFSMSKLGEGFVPPLKL-HPHNLPFSCKWILSVLNKAISRTASSLNSYEFSDAASTVYSW 856 (1022)
Q Consensus 778 f~~~~~~~~r~f~nkl~N~~rf~l~~l~~~~~p~~~~-~~~~~~~~D~wil~~L~~~~~~v~~a~e~~~f~~a~~~i~~f 856 (1022)
++.+.+.+.+++++|+||++||+++.+.+ +.|.... .....+..|+||+++++.+++.+.++|++|+|+.|++.+++|
T Consensus 1 i~~~~~~~~~~~~~Kl~N~~rf~~~~~~~-~~~~~~~~~~~~~~~~D~~il~~l~~~i~~~~~~~e~~~f~~a~~~i~~f 79 (180)
T cd07960 1 ISDEILKQVAEAYRKIRNTFRFLLGNLND-FDPAKDAVPYEELLELDRYALHRLNELIKEVREAYENYEFHKVYQALNNF 79 (180)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHcccC-CCcccccCChhhccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 34567889999999999999999987754 5543211 123567899999999999999999999999999999999999
Q ss_pred HHhhhhHHHHHhhcccccCCCcccHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHhCCCCCCCCCCCCeeeccCCC
Q 001708 857 WQYQFCDVFIEAIKPYFAGDNPAFASERSAAQHVLWVCLETGLRLLHPFMPFVTEELWQRLPQPKGCATKESIMLCEYPS 936 (1022)
Q Consensus 857 ~~~~l~~~Yle~~K~~l~~~~~~~~~~r~~a~~~L~~~L~~~l~LL~PfmPfitEelwq~L~~~~~~~~~~SI~~~~~P~ 936 (1022)
+++++||+|++.+|||++++... +..++.+..+|+.+++.+++||||||||+|||||+.|+.. .+..||+.++||+
T Consensus 80 ~~~~l~n~Yi~~~k~~~~~~~~~-~~~~~~~~~~l~~~l~~l~~lL~P~~P~~aeel~~~l~~~---~~~~~v~~~~wP~ 155 (180)
T cd07960 80 CTVDLSAFYLDIIKDRLYCDAKD-SLERRSAQTVLYHILDALLKLLAPILPFTAEEVWEHLPGE---KKEESVFLEDWPE 155 (180)
T ss_pred HHHHHHHHHHHhcccceecCCCC-CHHHHHHHHHHHHHHHHHHHHHcchhhhhHHHHHHhcccc---CCCCCeeccCCCC
Confidence 98899999999999998754211 0145668889999999999999999999999999999752 1136899999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHH
Q 001708 937 AVEGWTDERAEFEMDLVESTVRCI 960 (1022)
Q Consensus 937 ~~~~~~~~~~e~~~~~v~~iv~~i 960 (1022)
+++.+.|++++..|+.++++...|
T Consensus 156 ~~~~~~~~~~~~~~~~~~~i~~~~ 179 (180)
T cd07960 156 LPEEWKDEELEEKWEKLLALRDEV 179 (180)
T ss_pred CcccccCHHHHHHHHHHHHHHHhh
Confidence 998899999999998888876654
No 60
>COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.91 E-value=1.6e-23 Score=239.00 Aligned_cols=145 Identities=22% Similarity=0.340 Sum_probs=122.8
Q ss_pred CcccccccccchHHHHHHHHHhhhcCCCCceEEEeccceeCCCCccceecCCcccCcchhhccccchhHHHhhhcCCCCh
Q 001708 657 SVLETGHDILFFWVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLEGLHKRLEEGNLDP 736 (1022)
Q Consensus 657 dl~~~G~Dil~fW~a~m~~~~~~l~~~~Pfk~V~~Hg~v~D~~GrKMSKSlGNvIdP~dvI~g~~l~~l~~~l~~~nl~~ 736 (1022)
|+|-.|.|++|.+.-.-++.+.+.+|..||-+.++|.-.+.-+|+|||||+||+|...|+++
T Consensus 223 DIHgGG~DLiFPHHENEiAQsea~~g~~~~a~yWmH~G~l~i~geKMSKSLGNfiti~d~l~------------------ 284 (464)
T COG0215 223 DIHGGGSDLIFPHHENEIAQSEAATGVKPFAKYWMHNGFLNIDGEKMSKSLGNFITVRDLLK------------------ 284 (464)
T ss_pred ceecCcccccCCCcccHHHHHHhhhCCCcceeEeEEcceeeecCcCcccccCCeeEHHHHHh------------------
Confidence 79999999999999999999999999889999999965556999999999999999999998
Q ss_pred HHHHHHHhcccCCCCCCCCCCCchHHHHHHHhccCCCcccccchhhhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCC
Q 001708 737 KELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLDIQRVVGYRQWCNKLWNAVRFSMSKLGEGFVPPLKLHP 816 (1022)
Q Consensus 737 ~e~~~a~~~~~~~~~~~i~~~GaDaLR~~L~~~~~~~~Dinf~~~~~~~~r~f~nkl~N~~rf~l~~l~~~~~p~~~~~~ 816 (1022)
+|++.+|||+|++ +.....++|+.+.++.+++.+.+|+|+.+.+.....+ ..
T Consensus 285 -------------------~~~p~~lR~~lls-~HYR~pl~fsee~L~~A~~~l~rl~~~~~~~~~~~~~-~~------- 336 (464)
T COG0215 285 -------------------KYDPEVLRLFLLS-SHYRSPLDFSEELLEEAKKALERLYNALRRLRDLAGD-AE------- 336 (464)
T ss_pred -------------------hcCHHHHHHHHHH-HHhCCccccCHHHHHHHHHHHHHHHHHHHHHHhhccc-cc-------
Confidence 8999999999986 5667899999999999999999999999876533221 10
Q ss_pred CCCChhhHHHHHHHHHHHHHHHhhh-hcCCHHHHHHHHHHHH
Q 001708 817 HNLPFSCKWILSVLNKAISRTASSL-NSYEFSDAASTVYSWW 857 (1022)
Q Consensus 817 ~~~~~~D~wil~~L~~~~~~v~~a~-e~~~f~~a~~~i~~f~ 857 (1022)
.. .+......+.++| ++|++..|+..|+++.
T Consensus 337 --~~--------~~~~~~~~f~~al~DDfnt~~al~~l~~l~ 368 (464)
T COG0215 337 --LA--------DLKEFEARFREALDDDFNTPKALAVLFELA 368 (464)
T ss_pred --cc--------hhHHHHHHHHHHHHhccCcHHHHHHHHHHH
Confidence 00 3445566677777 5699999999999985
No 61
>PF08264 Anticodon_1: Anticodon-binding domain of tRNA; InterPro: IPR013155 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found valyl, leucyl and isoleucyl tRNA synthetases. It binds to the anticodon of the tRNA.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 4DLP_A 1RQG_A 4ARI_A 4AQ7_D 4ARC_A 4AS1_A 1IVS_B 1GAX_B 2CT8_B 2CSX_A ....
Probab=99.89 E-value=9.2e-23 Score=205.53 Aligned_cols=147 Identities=33% Similarity=0.585 Sum_probs=119.5
Q ss_pred hHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHhhhhHHHHHhhcccccCCCcccHHHHHHHHHHHHHHHHHHHHHH
Q 001708 823 CKWILSVLNKAISRTASSLNSYEFSDAASTVYSWWQYQFCDVFIEAIKPYFAGDNPAFASERSAAQHVLWVCLETGLRLL 902 (1022)
Q Consensus 823 D~wil~~L~~~~~~v~~a~e~~~f~~a~~~i~~f~~~~l~~~Yle~~K~~l~~~~~~~~~~r~~a~~~L~~~L~~~l~LL 902 (1022)
|+||+++++.+++.++++|++|+|+.|++.+++|+++++||+|++.+||++++++... .++ ++.+|+.+++.+++||
T Consensus 1 D~~il~~~~~~~~~~~~~~e~~~f~~a~~~i~~f~~~~~~n~Yl~~~k~~~~~~~~~~--~~~-~~~~l~~~l~~~~~ll 77 (153)
T PF08264_consen 1 DRWILSKLNELIKKVTEAYENYEFNKALKEIMNFIWNDLSNWYLELIKPWLYCKDDDE--SRE-AQYTLYEILKILLILL 77 (153)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHCHHHHHHHHHHHCTTTTCH--HHH-HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHhcccchhcccchh--HHH-HHHHHHHHHHHHhhcc
Confidence 8999999999999999999999999999999999889999999999999998764431 355 8999999999999999
Q ss_pred hchhhHHHHHHHHhCCCCCCCCCCCCeeeccCCCCCCCCCCHHH-HHHHHHHHHHHHHHHHHHHHhccCCCCCcce
Q 001708 903 HPFMPFVTEELWQRLPQPKGCATKESIMLCEYPSAVEGWTDERA-EFEMDLVESTVRCIRSLRAEVLGKQKNERLP 977 (1022)
Q Consensus 903 ~PfmPfitEelwq~L~~~~~~~~~~SI~~~~~P~~~~~~~~~~~-e~~~~~v~~iv~~iRslr~~~~~k~i~~~~~ 977 (1022)
||||||+||||||+|+... ....+||+.+.||. .....+... +..++.+.+++..+|++|+.. +++...+
T Consensus 78 ~P~~P~~aEeiw~~l~~~~-~~~~~si~~~~~p~-~~~~~~~~~~~~~~~~~~~v~~~i~~~r~~~---~i~~~~~ 148 (153)
T PF08264_consen 78 SPFMPFIAEEIWQRLKSEK-LGEKSSIFLEKWPE-DPEFIDEELEEEAFEILKEVVQVIRKIRKEK---NIKPKEP 148 (153)
T ss_dssp TTTSHHHHHHHHHHCTTHH-TTSSSSGGGS------GGGGHHHH-HHHHHHHHHHHHHHHHHHHCC---EESTTCG
T ss_pred CCCCcHHHHHHHHHhhhcc-CCCCCeeeeCCCCC-ChhhhcHHHHHHHHHHHHHHHHHHHHHHHHC---CCCCCCC
Confidence 9999999999999884211 12357999999998 543335556 788999999999999999987 6643333
No 62
>PRK00750 lysK lysyl-tRNA synthetase; Reviewed
Probab=99.89 E-value=2.3e-22 Score=238.97 Aligned_cols=126 Identities=18% Similarity=0.164 Sum_probs=91.3
Q ss_pred CCcEEEECCCCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeeeeeccCCccC--------hhHHHHHHHHHHHHhCCCcc
Q 001708 174 KPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAG--------IATQVVVEKKLMRERKLTRH 245 (1022)
Q Consensus 174 k~~f~i~~pPPy~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG~D~~G--------lp~q~~vEk~l~~~~~~~~~ 245 (1022)
++.++|.+|+ +|||.+||||+...+..|+++|+.|++|++|.+++|+|.|| +|.+..+++.+ |+...
T Consensus 22 ~~~~~~~~g~-~psG~~HiG~~~e~~~~d~v~r~lr~~G~~v~~i~~~Dd~d~lRkvp~~~p~~~~~~~~~----G~pl~ 96 (510)
T PRK00750 22 KPPVVVETGI-GPSGLPHIGNFREVARTDMVRRALRDLGIKTRLIFFSDDMDGLRKVPDNVPNQEMLEEYL----GKPLT 96 (510)
T ss_pred CCcEEEEeCC-CCCCCcccccccchhhHHHHHHHHHHcCCcEEEEEEEecCCcccccCCCCCchHHHHHhc----Ccccc
Confidence 4458888887 59999999999999999999999999999999999999998 77654455443 55432
Q ss_pred ccChHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCccccCChhhH-HHHHHHHHHHHHcCcEE
Q 001708 246 DIGREQFVSEVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRS-KAVTEAFVRLYKEGLIY 309 (1022)
Q Consensus 246 ~~g~e~f~~~~~~~~~~~~~~i~~ql~rlG~s~DW~r~~~T~d~~~~-~~v~~~F~~L~ekGlIy 309 (1022)
.+.. .|= .+..|++.+...+.+.|+++|+++| .+.|.+-..+ .....++..|.+.+.|.
T Consensus 97 ~~p~-p~G-~~~~~~~~~~~~~~~~~~~~gi~~d---~~~~t~~y~~g~~~~~i~~~l~~~~~i~ 156 (510)
T PRK00750 97 EIPD-PFG-CHESYAEHFNAPLREFLDRFGIEYE---FISATECYKSGRYDEAILTALENRDEIM 156 (510)
T ss_pred cCCC-CCC-CchHHHHHHHHHHHHHHHHcCCceE---EEehhhhhccCchHHHHHHHHHhHHHHH
Confidence 2211 111 1568999999999999999999998 3334442222 34444455555555543
No 63
>PF01406 tRNA-synt_1e: tRNA synthetases class I (C) catalytic domain; InterPro: IPR015803 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Cysteinyl-tRNA synthetase (6.1.1.16 from EC) is an alpha monomer and belongs to class Ia.; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3SP1_B 3TQO_A 3C8Z_B 1LI5_B 1LI7_B 1U0B_B.
Probab=99.87 E-value=2.1e-22 Score=220.03 Aligned_cols=123 Identities=20% Similarity=0.254 Sum_probs=89.3
Q ss_pred cEEEECCCCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeeeeeccCCccChhHHHHHHHHHHHHhCCCccccChHHHHHH
Q 001708 176 SFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSE 255 (1022)
Q Consensus 176 ~f~i~~pPPy~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG~D~~Glp~q~~vEk~l~~~~~~~~~~~g~e~f~~~ 255 (1022)
+.++|- |+|-..+|||||++++..|++.||.+..||+|.++.+.-.-.=.| -++. ++.|++.
T Consensus 10 ~~Y~CG--PTVYd~~HiGhaR~~v~~D~l~R~L~~~g~~V~~V~NiTDiDDKi----i~~A-~~~g~~~----------- 71 (300)
T PF01406_consen 10 RMYVCG--PTVYDYAHIGHARTYVFFDVLRRYLEYLGYDVTYVMNITDIDDKI----IKRA-REEGVSP----------- 71 (300)
T ss_dssp EEEEEE--EBTTS--BHHHHHHHHHHHHHHHHHHHTT-EEEEEEEEB-SSHHH----HHHH-HHTTS-H-----------
T ss_pred EEEcCC--CCCCCCCCCcceeeeeeHHHHHHHHHHcCCeEEEEEeccccchHH----HHHH-HhccCCH-----------
Confidence 444444 778899999999999999999999999999999999886644333 2222 3456654
Q ss_pred HHHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHHHcCcEEEcc-eeeeecCC
Q 001708 256 VWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDL-RLVNWDCV 320 (1022)
Q Consensus 256 ~~~~~~~~~~~i~~ql~rlG~s~DW~r~~~T~d~~~~~~v~~~F~~L~ekGlIyr~~-~~V~W~p~ 320 (1022)
++.+..|.+.+.+.|++||+.-...-+..| ++...+.+...+|.++|+.|... .-|+++..
T Consensus 72 -~ela~~y~~~f~~dm~~Lnv~~p~~~prat---e~i~~ii~~i~~Li~~G~AY~~~~g~VYFdv~ 133 (300)
T PF01406_consen 72 -QELARRYEEEFFEDMKALNVLPPDHYPRAT---EHIPEIIELIEKLIDKGHAYESEDGSVYFDVS 133 (300)
T ss_dssp -HHHHHHHHHHHHHHHHHTT----SEEEEGG---GGHHHHHHHHHHHHHTTSEEEETTSEEEE-CC
T ss_pred -HHHHHHHHHHHHHHHHHcCCCCCccccchh---ccHHHHHHHHHHHHHCCCeEEcCCCcEEEeec
Confidence 466888999999999999998763333333 78999999999999999999998 77777764
No 64
>TIGR00456 argS arginyl-tRNA synthetase. This model recognizes arginyl-tRNA synthetase in every completed genome to date. An interesting feature of the alignment of all arginyl-tRNA synthetases is a fairly deep split between two families. One family includes archaeal, eukaryotic and organellar, spirochete, E. coli, and Synechocystis sp. The second, sharing a deletion of about 25 residues in the central region relative to the first, includes Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and Mycobacteria, and the Gram-negative bacterium Helicobacter pylori.
Probab=99.86 E-value=3e-19 Score=215.95 Aligned_cols=220 Identities=18% Similarity=0.132 Sum_probs=136.5
Q ss_pred cccccchHHHHHHHHHhhhcCCCCceEEEeccceeCCCCccceecCCcccCcchhhccccchhHHHhhhcCCC-ChHHHH
Q 001708 662 GHDILFFWVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLEGLHKRLEEGNL-DPKELE 740 (1022)
Q Consensus 662 G~Dil~fW~a~m~~~~~~l~~~~Pfk~V~~Hg~v~D~~GrKMSKSlGNvIdP~dvI~g~~l~~l~~~l~~~nl-~~~e~~ 740 (1022)
|.||. ++|.++.....++ |..+-+++.+|++.+ .+|.|||||+||+|+|.|+++... +...+.+...+. +.+++
T Consensus 335 g~~q~-~h~~~v~~~l~~l-G~~~~~~l~h~~~~~-V~~~kmSkr~Gn~V~~~dll~~~~-~ra~~~i~~~~~~~~~~~- 409 (566)
T TIGR00456 335 GSDHH-LHIAQFFAILEKL-GFYKKKELIHLNFGM-VPLGSMKTRRGNVISLDNLLDEAS-KRAGNVITIKNDLEEEDV- 409 (566)
T ss_pred cCcHH-HHHHHHHHHHHHc-CCCCCCceEEEEEEE-EECCCCCccCCceeeHHHHHHHHH-HHHHHHHHhcCCccHHHH-
Confidence 55543 4566665444443 422337888888876 567899999999999999987311 000111111111 11222
Q ss_pred HHHhcccCCCCCCCCCCCchHHHHHHHhccCCCcccccchhhhHHHH-HHHHHHHHHHHHHHhhcCC---CCCCCCCCCC
Q 001708 741 VAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLDIQRVVGYR-QWCNKLWNAVRFSMSKLGE---GFVPPLKLHP 816 (1022)
Q Consensus 741 ~a~~~~~~~~~~~i~~~GaDaLR~~L~~~~~~~~Dinf~~~~~~~~r-~f~nkl~N~~rf~l~~l~~---~~~p~~~~~~ 816 (1022)
+.++|+||+||++++.. .+.|++||++.+.... +..+.+-|+..++.+.+.. +..+....+.
T Consensus 410 -------------~~~vg~dAvRy~~L~~~-~~~d~~Fd~d~~~~~~~n~~~yiqYa~aR~~SIlrK~~~~~~~~~~~~~ 475 (566)
T TIGR00456 410 -------------ADAVGIGAVRYFDLSQN-RETHYVFDWDAMLSFEGNTAPYIQYAHARICSILRKADIDGEKLIADDF 475 (566)
T ss_pred -------------HHHhcccceeeHHhhcC-CCCCceecHHHHhccCCCCchhHHHHHHHHHHHHHhccccccccccccc
Confidence 23799999999999877 5789999998754321 2333344444333322211 1111111111
Q ss_pred CCCChhhHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHhhhhHHHHHhhcccccCCCcccHHHHHHHHHHHHHHHH
Q 001708 817 HNLPFSCKWILSVLNKAISRTASSLNSYEFSDAASTVYSWWQYQFCDVFIEAIKPYFAGDNPAFASERSAAQHVLWVCLE 896 (1022)
Q Consensus 817 ~~~~~~D~wil~~L~~~~~~v~~a~e~~~f~~a~~~i~~f~~~~l~~~Yle~~K~~l~~~~~~~~~~r~~a~~~L~~~L~ 896 (1022)
...+..++.++..+..+...+.+++++++++.++..++++ ...+|.|++.+ +.+..++++....|.........+|.
T Consensus 476 ~~~~~~e~~Ll~~l~~~~~~v~~a~~~~~p~~~~~~l~~L--a~~~N~yy~~~-~Vl~~~~~~~~~~RL~L~~a~~~vl~ 552 (566)
T TIGR00456 476 SLLEEKEKELLKLLLQFPDVLEEAAEELEPHVLTNYLYEL--ASLFSSFYKAC-PVLDAENENLAAARLALLKATRQTLK 552 (566)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHH--HHHHHHHHhcC-ccCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 1235567788999999999999999999999999999998 47788888866 55543333222245555555666777
Q ss_pred HHHHHHh
Q 001708 897 TGLRLLH 903 (1022)
Q Consensus 897 ~~l~LL~ 903 (1022)
.+|.||-
T Consensus 553 ~gL~lLG 559 (566)
T TIGR00456 553 NGLQLLG 559 (566)
T ss_pred HHHHhcC
Confidence 7777773
No 65
>PF13603 tRNA-synt_1_2: Leucyl-tRNA synthetase, Domain 2; PDB: 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 2BTE_A 2V0G_A 2BYT_A ....
Probab=99.86 E-value=1e-21 Score=202.80 Aligned_cols=126 Identities=39% Similarity=0.629 Sum_probs=96.7
Q ss_pred eEeeecCCCcceEEEeeccccccccCcEEEEcCCcccc---------------------------------ccccCCeee
Q 001708 357 SFAYPLEGGLGEIVVATTRVETMLGDTAIAIHPEDARY---------------------------------SHLHGKFAI 403 (1022)
Q Consensus 357 ~~~y~l~~~~~~l~v~TTrPeTl~g~~avaV~P~d~ry---------------------------------~~L~G~~~~ 403 (1022)
.+.|++.++++.|.|+||||+||+|.+.||++|+++.- --+.|.++.
T Consensus 11 ~i~F~i~~~~~~i~vFTTrpdTifGvtfials~~H~lv~~l~~~~~~l~~fi~~~~~~~~~~~~~~~~~k~Gv~tg~~ai 90 (185)
T PF13603_consen 11 EIDFKIKGSNEKIEVFTTRPDTIFGVTFIALSPEHPLVKKLAENNPELQEFIEKCKKIKNSERNKDFKEKEGVFTGLYAI 90 (185)
T ss_dssp EEEEEBTTSSCEEEEEES-GGGGGG--EEEEETTSCHHHHCTTTHHHHHHHHHHHHTS-HHHHHHCSSS--EEEEEEEEE
T ss_pred EEEEEecCCCCEEEEEECCcchhhCceEEEECCCCHHHHhhhhhhhhHHHHHHHHhcCCHhHhhhhccccccCcCCCEEE
Confidence 46778888888999999999999999999999998621 014688999
Q ss_pred cCCCCCccceEeCCccccCCCCCCceecCCCCCcchHHHHHHcCCceeeeeCC----------------CCccccCCCCC
Q 001708 404 HPFNGRKIPIICDAILVDPKFGTGAVKITPAHDPNDFDVGKRHNLEFINIFTD----------------DGKINSNGGLE 467 (1022)
Q Consensus 404 ~P~~~~~~pIi~~~~~V~~~~GTG~V~~~PaH~~~Dy~~~~~~~L~~i~iid~----------------~G~~~e~~g~~ 467 (1022)
||++++++||+.++| |.+++|||+||.+||||..||+++++||||+..+|.. +|.+. |+| +
T Consensus 91 hP~t~~~iPI~va~y-Vl~~yGtgAVmgvPahD~rD~~FAk~~~lpi~~Vi~~~~~~~~~~~~~~~~~~~G~l~-nS~-~ 167 (185)
T PF13603_consen 91 HPLTGKKIPIYVANY-VLMDYGTGAVMGVPAHDERDFEFAKKYNLPIKQVIKPKDDNEEIDNKQEAYTGDGILI-NSG-E 167 (185)
T ss_dssp -TTTS-EEEEEEETT-S-TTSTTSEEEE-CCC-HHHHHHHHHHT------EEBSSSS---STTSS---S--EE--SSG-G
T ss_pred CCCCCCCccEEEECc-eeecCCcceEEEcCCCCHHHHHHHHHcCCCeeEEEcCCCCcccccccccCcCCCEEEE-eCC-C
Confidence 999999999999996 9999999999999999999999999999999888753 36666 778 9
Q ss_pred CCCCChhhHHHHHHHHHH
Q 001708 468 FEGMPRFKAREAVNEALK 485 (1022)
Q Consensus 468 f~G~~~~~ar~~vi~~L~ 485 (1022)
|.||+..+|+++|++.|+
T Consensus 168 f~Gl~~~eA~~~I~~~Le 185 (185)
T PF13603_consen 168 FNGLSSKEAREKIIKKLE 185 (185)
T ss_dssp GTTSBHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 999999999999999985
No 66
>KOG2007 consensus Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.83 E-value=1.5e-18 Score=195.43 Aligned_cols=169 Identities=17% Similarity=0.143 Sum_probs=140.1
Q ss_pred cCcccccccccchHHHHHHHHHhhhcCCCCceEEEeccceeCCCCccceecCCcccCcchhhccccchhHHHhhhcCCCC
Q 001708 656 TSVLETGHDILFFWVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLEGLHKRLEEGNLD 735 (1022)
Q Consensus 656 ~dl~~~G~Dil~fW~a~m~~~~~~l~~~~Pfk~V~~Hg~v~D~~GrKMSKSlGNvIdP~dvI~g~~l~~l~~~l~~~nl~ 735 (1022)
.|++-.|.|+-|.+.-.-++.+.+.....++-+.++|.--+..+|+|||||++|+|+..++++
T Consensus 259 lDIH~GG~DL~FPHHeNEiAQ~eA~~~~~~wVnYflHtGhL~i~g~KMSKSLkNFiTIke~Lk----------------- 321 (586)
T KOG2007|consen 259 LDIHGGGIDLAFPHHENEIAQSEAAFDDSQWVNYFLHTGHLTINGEKMSKSLKNFITIKEALK----------------- 321 (586)
T ss_pred cceecCcccccCCCcccHHHHHHHHhcCCccceeEEEcCeeeeccchhhhhhccceeHHHHHH-----------------
Confidence 378889999999999999999999988888999999955556999999999999999999998
Q ss_pred hHHHHHHHhcccCCCCCCCCCCCchHHHHHHHhccCCCcccccchhhhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCC
Q 001708 736 PKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLDIQRVVGYRQWCNKLWNAVRFSMSKLGEGFVPPLKLH 815 (1022)
Q Consensus 736 ~~e~~~a~~~~~~~~~~~i~~~GaDaLR~~L~~~~~~~~Dinf~~~~~~~~r~f~nkl~N~~rf~l~~l~~~~~p~~~~~ 815 (1022)
.|.+++||++++. .....+++|+.+.++.+.++.+.+.|++.-+...... -.|
T Consensus 322 --------------------~~sp~qLRl~fl~-~~wr~~ldYs~s~m~~a~q~e~~~~~ff~~~~al~~~-~~~----- 374 (586)
T KOG2007|consen 322 --------------------KYSPRQLRLAFLL-HQWRSPLDYSDSTMEQALQLEKSLNNFFLDVKALLRG-AKP----- 374 (586)
T ss_pred --------------------hcCHHHHHHHHHH-HHhcCcCCchHHHHHHHHHHHHHHHHHHHHHHHHHhc-cch-----
Confidence 8999999999875 4566799999998888888777777776543332221 111
Q ss_pred CCCCChhhHHHHHHHHHHHHHHHhhh-hcCCHHHHHHHHHHHHHhhhhHHHHHhhc
Q 001708 816 PHNLPFSCKWILSVLNKAISRTASSL-NSYEFSDAASTVYSWWQYQFCDVFIEAIK 870 (1022)
Q Consensus 816 ~~~~~~~D~wil~~L~~~~~~v~~a~-e~~~f~~a~~~i~~f~~~~l~~~Yle~~K 870 (1022)
++.++..+..++.++.....++..++ ++++-..++..+.++ ...+|.||....
T Consensus 375 ~~~~~~~e~~l~~~~~~t~~~vh~al~d~~dT~~v~~~~~~l--vs~~N~~i~~~~ 428 (586)
T KOG2007|consen 375 FEKLSEKEAELLEDFGKTQTAVHAALCDNFDTPRVMEAIREL--VSQGNAYIRESG 428 (586)
T ss_pred hhccChHHHHHHHhhhhHHHHHHHHHHhccccHHHHHHHHHH--HhhhhHHHHHhc
Confidence 34567888999999999999999888 789999999999998 478999998776
No 67
>TIGR00467 lysS_arch lysyl-tRNA synthetase, archaeal and spirochete. This model represents the lysyl-tRNA synthetases that are class I amino-acyl tRNA synthetases. It includes archaeal and spirochete examples of the enzyme. All other known examples are class IIc amino-acyl tRNA synthetases and seem to form a separate orthologous set.
Probab=99.73 E-value=6e-17 Score=191.67 Aligned_cols=97 Identities=19% Similarity=0.189 Sum_probs=75.6
Q ss_pred CcEEEECCCCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeeeeeccCCcc--------ChhHHHHHHHHHHHHhCCCccc
Q 001708 175 PSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHA--------GIATQVVVEKKLMRERKLTRHD 246 (1022)
Q Consensus 175 ~~f~i~~pPPy~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG~D~~--------Glp~q~~vEk~l~~~~~~~~~~ 246 (1022)
.+++|.+|.+ |||.+||||++..+..|+++|+.|++|++|.+++|+|+| ++| + ..++.+ |.....
T Consensus 18 ~~~~~~tg~~-psG~~HiG~~~e~~~~d~v~r~~r~~g~~~~~i~~~Dd~D~lRKvp~~~p-~-~~~~yl----G~Pl~~ 90 (515)
T TIGR00467 18 NLYTVASGIT-PSGHIHIGNFREVITADAIARALRDSGSEARFIYIADNYDPLRKVYPFLP-E-ELETYL----GMPLTR 90 (515)
T ss_pred CeEEEecCCC-CCCCccccchhhhhHHHHHHHHHHHcCCCEEEEEEEcCCccccccccccc-H-HHHHhC----CCccee
Confidence 3699999999 999999999999999999999999999999999999999 555 1 133332 332211
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q 001708 247 IGREQFVSEVWKWKDEYGGTILRQQRRLGASLDW 280 (1022)
Q Consensus 247 ~g~e~f~~~~~~~~~~~~~~i~~ql~rlG~s~DW 280 (1022)
+. +.| ..+..|++.+...+.+.|..||+.+++
T Consensus 91 vp-dp~-g~~~s~~~h~~~~~~~~l~~~gi~~e~ 122 (515)
T TIGR00467 91 IP-DPE-GCKTSYAEHFLIPFLESLPVLGINPEF 122 (515)
T ss_pred cC-CCC-CCcHHHHHHHHHHHHHHHHHcCCeEEE
Confidence 11 111 013588999999999999999998873
No 68
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.71 E-value=6.4e-15 Score=176.19 Aligned_cols=215 Identities=20% Similarity=0.232 Sum_probs=129.7
Q ss_pred ccccccchHHHHHHHHHhhhcCCCCceEEEec---cceeCCCCccceecCCcccCcchhhccccchhHHHhhhcCCCChH
Q 001708 661 TGHDILFFWVARMVMLGIKLGGEVPFTKVYLH---PMIRDAHGRKMSKSLGNVIDPLEVINGISLEGLHKRLEEGNLDPK 737 (1022)
Q Consensus 661 ~G~Dil~fW~a~m~~~~~~l~~~~Pfk~V~~H---g~v~D~~GrKMSKSlGNvIdP~dvI~g~~l~~l~~~l~~~nl~~~ 737 (1022)
.|.||. +++.++.... .+.|..|-+.+++| |++++.+|.||||-.||+|...|+++-.. ...+.
T Consensus 341 ~gadq~-~~~~ql~~~l-~~~g~~~~~~~~~h~~~~l~~~~~g~kmStR~G~~vtl~dllde~~-----------era~~ 407 (577)
T COG0018 341 LGADQH-GHFKQLKAVL-ELLGYGPDKEVLLHQGVGLVRGGEGVKMSTRAGNVVTLDDLLDEAG-----------ERAPE 407 (577)
T ss_pred eCCcch-hHHHHHHHHH-HHhcCCCccceEEEEEEeeeECCCCccccccCCceEEHHHHHHHHH-----------HHhhh
Confidence 366653 4455554322 22233343445555 78888999999999999999999998321 11111
Q ss_pred HHHHHHhcccCCCCCCCCCCCchHHHHHHHhccCCCcccccchhhhHH------------HHHHHHHHHHHHHHHHhhcC
Q 001708 738 ELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLDIQRVVG------------YRQWCNKLWNAVRFSMSKLG 805 (1022)
Q Consensus 738 e~~~a~~~~~~~~~~~i~~~GaDaLR~~L~~~~~~~~Dinf~~~~~~~------------~r~f~nkl~N~~rf~l~~l~ 805 (1022)
+++.. .+.. -+.....|.||+||++++.+. ..++.||++.+.. +.+.|.-++++-.. .
T Consensus 408 ~~~~~---~~~~-~~iA~~vgi~Avry~~l~~~~-~~~~~Fd~d~~lsfegNt~pYvQYA~ARi~SIlrka~e~-----~ 477 (577)
T COG0018 408 EMEEK---EEKN-EEIAEVVGIDAVRYADLSRSR-DKDYVFDWDKALSFEGNTAPYVQYAHARICSILRKAGED-----E 477 (577)
T ss_pred Hhhhh---hhhh-HHHHHHhhhhhHHHHHHhcCC-CCCcEeeHHHHHhccCCCchhHHHHHHHHHHHHHhcccc-----c
Confidence 11111 0000 111236899999999998665 4699999987643 22233222222110 0
Q ss_pred CCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHhhhhHHHHHhhcccccCCCcccHHHHH
Q 001708 806 EGFVPPLKLHPHNLPFSCKWILSVLNKAISRTASSLNSYEFSDAASTVYSWWQYQFCDVFIEAIKPYFAGDNPAFASERS 885 (1022)
Q Consensus 806 ~~~~p~~~~~~~~~~~~D~wil~~L~~~~~~v~~a~e~~~f~~a~~~i~~f~~~~l~~~Yle~~K~~l~~~~~~~~~~r~ 885 (1022)
..+. ......-..+.++-++.+|.++...+.++.++++.+..+..++++. ..|++||=.. +.+..++++...+|.
T Consensus 478 ~~~~--~~~~~~l~~~~E~~L~~~L~~fp~vl~~aa~~~~Ph~la~YL~~LA-~~Fn~fY~~~--~Vl~~~~~~~~~aRL 552 (577)
T COG0018 478 LDLS--TEADALLTELEERELVKKLLEFPEVLEEAAEELEPHRLANYLYDLA-GSFNSFYNAC--PVLGAENEELRAARL 552 (577)
T ss_pred cccc--cccchhccChHHHHHHHHHHHhHHHHHHHHHhcCchHHHHHHHHHH-HHHHHHHhhC--CcCCCCcHHHHHHHH
Confidence 0010 0000011123367799999999999999999999999999999997 8899999542 445444432222455
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 001708 886 AAQHVLWVCLETGLRLLH 903 (1022)
Q Consensus 886 ~a~~~L~~~L~~~l~LL~ 903 (1022)
........+|..+|.||-
T Consensus 553 ~L~~a~~~vL~ngL~LLG 570 (577)
T COG0018 553 ALVKATRQVLKNGLDLLG 570 (577)
T ss_pred HHHHHHHHHHHHHHHhcC
Confidence 555566677777887774
No 69
>cd07962 Anticodon_Ia_Val Anticodon-binding domain of valyl tRNA synthetases. This domain is found in valyl tRNA synthetases (ValRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. ValRS catalyzes the transfer of valine to the 3'-end of its tRNA.
Probab=99.69 E-value=4.6e-16 Score=154.16 Aligned_cols=135 Identities=47% Similarity=0.895 Sum_probs=109.1
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHH
Q 001708 778 LDIQRVVGYRQWCNKLWNAVRFSMSKLGEGFVPPLKLHPHNLPFSCKWILSVLNKAISRTASSLNSYEFSDAASTVYSWW 857 (1022)
Q Consensus 778 f~~~~~~~~r~f~nkl~N~~rf~l~~l~~~~~p~~~~~~~~~~~~D~wil~~L~~~~~~v~~a~e~~~f~~a~~~i~~f~ 857 (1022)
||.+.+.+.++|++|+||+.+|+.++... +.+... +.......|+++++.++.+++.+.++|++|+|++|++.+++++
T Consensus 1 ~~~~~~~~~~~~l~k~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~d~~l~~~~~~~~~~~~~~~e~~~~~~al~~i~~~~ 78 (135)
T cd07962 1 FDEKRVEGGRNFCNKLWNAARFVLMNLED-DDEPEE-DPESLSLADRWILSRLNKTVEEVTEALENYRFSEAATALYEFF 78 (135)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHcccc-cCcccc-ccccCCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 57788999999999999999998653222 222110 1123456789999999999999999999999999999999998
Q ss_pred HhhhhHHHHHhhcccccCCCcccHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHhC
Q 001708 858 QYQFCDVFIEAIKPYFAGDNPAFASERSAAQHVLWVCLETGLRLLHPFMPFVTEELWQRL 917 (1022)
Q Consensus 858 ~~~l~~~Yle~~K~~l~~~~~~~~~~r~~a~~~L~~~L~~~l~LL~PfmPfitEelwq~L 917 (1022)
..+++|+|++..+||....+.. .......++..+++.+++||+|||||+||+||+.|
T Consensus 79 ~~~~~N~Yi~~~~pW~~~~~~~---~~~~~~~~~~~~l~~l~~lL~P~~P~~ae~l~~~L 135 (135)
T cd07962 79 WNDFCDWYLELVKPRLYGEDEE---EKKAARATLYYVLETILRLLHPFMPFITEELWQRL 135 (135)
T ss_pred HHHHhHHHHHHhhHHHcCCChH---HHHHHHHHHHHHHHHHHHHHCccccHHHHHHHhcC
Confidence 5569999999999995543322 34557778889999999999999999999999875
No 70
>PRK12451 arginyl-tRNA synthetase; Reviewed
Probab=99.67 E-value=8.7e-14 Score=168.19 Aligned_cols=210 Identities=23% Similarity=0.202 Sum_probs=127.2
Q ss_pred cccccccchHHHHHHHHHhhhcCCCC--ceEEEeccceeCCCCccceecCCcccCcchhhccccchhHHHhhhcCC--CC
Q 001708 660 ETGHDILFFWVARMVMLGIKLGGEVP--FTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLEGLHKRLEEGN--LD 735 (1022)
Q Consensus 660 ~~G~Dil~fW~a~m~~~~~~l~~~~P--fk~V~~Hg~v~D~~GrKMSKSlGNvIdP~dvI~g~~l~~l~~~l~~~n--l~ 735 (1022)
+.|.||. +++.++....-.+ |..+ --.++.+|+|. .+|+||||.+||+|...|+++.. .+...+.+.+-+ ++
T Consensus 330 V~g~dq~-~h~~~l~~~~~~l-g~~~~~~l~h~~~g~V~-~~g~kmStR~G~~v~l~dLldea-~~~a~~~~~~~~~~l~ 405 (562)
T PRK12451 330 VVGPEQS-LHFNQFFTVLKKL-GYTWVDGMEHVPFGLIL-KDGKKMSTRKGRVVLLEEVLEEA-IELAKQNIEEKNPNLK 405 (562)
T ss_pred EeCCcHH-HHHHHHHHHHHHc-CCCcccCeEEEeeeeEe-cCCCCCcCCCCCeeEHHHHHHHH-HHHHHHHHHhhccccc
Confidence 3355653 4555555443333 4222 13457888997 68899999999999999999831 111112222222 22
Q ss_pred hHHHHHHHhcccCCCCCCCCCCCchHHHHHHHhccCCCcccccchhhhHH------------HHHHHHHHHHHHHHHHhh
Q 001708 736 PKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLDIQRVVG------------YRQWCNKLWNAVRFSMSK 803 (1022)
Q Consensus 736 ~~e~~~a~~~~~~~~~~~i~~~GaDaLR~~L~~~~~~~~Dinf~~~~~~~------------~r~f~nkl~N~~rf~l~~ 803 (1022)
+.|. .|. ..|.||+||++++... ..++.||++.+.. +.+.|.-+..+
T Consensus 406 ~~~~-~a~------------~vg~~Airy~~l~~~~-~~~~~Fd~d~~l~~~g~t~pYiQYa~AR~~SIlrka------- 464 (562)
T PRK12451 406 QKEE-VAK------------QVGVGAVIFHDLKNER-MHNIEFSLENMLKFEGETGPYVQYTHARACSILRKE------- 464 (562)
T ss_pred cHHH-HHH------------HhccceeeeHHhhcCC-CCCceECHHHHhCcCCCccHHHHHHHHHHHHHHHhc-------
Confidence 2111 111 6799999999998655 5699999987432 22333333332
Q ss_pred cCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHhhhhHHHHHhhcccccCCCcccHHH
Q 001708 804 LGEGFVPPLKLHPHNLPFSCKWILSVLNKAISRTASSLNSYEFSDAASTVYSWWQYQFCDVFIEAIKPYFAGDNPAFASE 883 (1022)
Q Consensus 804 l~~~~~p~~~~~~~~~~~~D~wil~~L~~~~~~v~~a~e~~~f~~a~~~i~~f~~~~l~~~Yle~~K~~l~~~~~~~~~~ 883 (1022)
+.++.. ....-..+.++-++..+..+...+.+++++++++.++..+++++ ...|.|++.+ +.+. + ++....
T Consensus 465 -~~~~~~---~~~~l~~~~E~~Ll~~L~~~~~~v~~a~e~~ep~~~~~yl~~LA--~~fN~fy~~~-~Vl~-~-~~~~~~ 535 (562)
T PRK12451 465 -SVEFET---CTFALKDDYSWSVVKLLNKFPQVIEAAFNKNEPSVISKYVLDVA--QSFNKYYGNV-RILE-E-SAEKDS 535 (562)
T ss_pred -CCCccc---cccCCCCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH--HHHHHHHHhC-CCCC-C-HHHHHH
Confidence 111110 11111245567788999999999999999999999999999984 5666677654 4442 2 221124
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 001708 884 RSAAQHVLWVCLETGLRLLH 903 (1022)
Q Consensus 884 r~~a~~~L~~~L~~~l~LL~ 903 (1022)
|.........+|..+|.||-
T Consensus 536 RL~L~~a~~~vL~~gL~LLG 555 (562)
T PRK12451 536 RLALVYAVTVVLKEGLRLLG 555 (562)
T ss_pred HHHHHHHHHHHHHHHHHhcC
Confidence 44445555666777777763
No 71
>cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases. Arginyl tRNA synthetase (ArgRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. There are at least three subgroups of ArgRS. One type contains both characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The second subtype lacks the KMSKS motif; however, it has a lysine N-terminal to the HIGH motif, which serves as the functional counterpart to the second lysine of the KMSKS motif. A third group, which is found primarily in archaea and a few bacteria, lacks both the KMSKS motif and the HIGH loop lysine.
Probab=99.63 E-value=1.9e-15 Score=161.23 Aligned_cols=123 Identities=20% Similarity=0.170 Sum_probs=105.6
Q ss_pred EEEECCCCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeeeeeccCCccChhHHHHHHHHHHHHhCCCccccChHHHHHHH
Q 001708 177 FVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEV 256 (1022)
Q Consensus 177 f~i~~pPPy~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG~D~~Glp~q~~vEk~l~~~~~~~~~~~g~e~f~~~~ 256 (1022)
.+|=-.+|||||.|||||+++.++.|+++||.|+.|++|.+..|+|.+|.+++..++... .+
T Consensus 2 v~ve~~spN~~~~~HiGH~R~~vigD~l~R~l~~~G~~V~~~~~~~D~G~qi~~~a~~~~------------------~~ 63 (212)
T cd00671 2 ILVEFVSANPTGPLHVGHLRNAIIGDSLARILEFLGYDVTREYYINDWGRQIGLLILSLE------------------KW 63 (212)
T ss_pred eEEEecCCCCCCCccccccHHHHHHHHHHHHHHHCCCcEEEEeccCCcHHHHHHHHHHHH------------------HH
Confidence 456668999999999999999999999999999999999999999999999988775431 16
Q ss_pred HHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHHHcCcEEEcceeeeecCCC
Q 001708 257 WKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDLRLVNWDCVL 321 (1022)
Q Consensus 257 ~~~~~~~~~~i~~ql~rlG~s~DW~r~~~T~d~~~~~~v~~~F~~L~ekGlIyr~~~~V~W~p~~ 321 (1022)
+++++.+.+.+.+.+++||+++| ....|.+. ...+..++.+|.++|++|+..--+..|+.+
T Consensus 64 ~~~~~~~~~~~~~~~~~L~i~~d--~~~~es~~--~~~~~~~i~~L~~~g~~~~~~g~~~~~~~~ 124 (212)
T cd00671 64 RKLVEESIKADLETYGRLDVRFD--VWFGESSY--LGLMGKVVELLEELGLLYEEDGALWLDLTE 124 (212)
T ss_pred HHHHHHHHHHHHHHHHHhCCcCc--eecchhhh--hhHHHHHHHHHHHCCCEEEeCCcEEEechh
Confidence 78899999999999999999998 33345543 788999999999999999998777777643
No 72
>cd07959 Anticodon_Ia_Leu_AEc Anticodon-binding domain of archaeal and eukaryotic cytoplasmic leucyl tRNA synthetases. This domain is found in leucyl tRNA synthetases (LeuRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain. In contrast to other class Ia enzymes, the anticodon is not used as an identity element in LeuRS (with exceptions such as Saccharomyces cerevisiae and some other eukaryotes). No anticodon-binding site can be defined for this family, which includes archaeal and eukaryotic cytoplasmic members. LeuRS catalyzes the transfer of leucine to the 3'-end of its tRNA.
Probab=99.63 E-value=4.4e-15 Score=142.72 Aligned_cols=116 Identities=22% Similarity=0.328 Sum_probs=96.4
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHhhhhcCCHHHHHHHH-HHH
Q 001708 778 LDIQRVVGYRQWCNKLWNAVRFSMSKLGEGFVPPLKLHPHNLPFSCKWILSVLNKAISRTASSLNSYEFSDAASTV-YSW 856 (1022)
Q Consensus 778 f~~~~~~~~r~f~nkl~N~~rf~l~~l~~~~~p~~~~~~~~~~~~D~wil~~L~~~~~~v~~a~e~~~f~~a~~~i-~~f 856 (1022)
|+.+.+.++.+|++++|+.+....+. ..|. ...+..|+|++++++.+++++.++|++|+|+.|++.+ +.|
T Consensus 1 w~~~~~~~~~~~l~R~~~~~~~~~~~----~~~~-----~~~~~~d~~~~~~~~~~i~~v~~~~~~~~f~~a~~~~~~~~ 71 (117)
T cd07959 1 FREEEANSAILRLERFYELAEELIET----EGEL-----EELTFIDRWLLSRLNRLIKETTEAYENMQFREALKEGLYEL 71 (117)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHhc----cCCc-----cccchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 56677899999999999998753221 1221 1346789999999999999999999999999999997 777
Q ss_pred HHhhhhHHHHHhhcccccCCCcccHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHhC
Q 001708 857 WQYQFCDVFIEAIKPYFAGDNPAFASERSAAQHVLWVCLETGLRLLHPFMPFVTEELWQRL 917 (1022)
Q Consensus 857 ~~~~l~~~Yle~~K~~l~~~~~~~~~~r~~a~~~L~~~L~~~l~LL~PfmPfitEelwq~L 917 (1022)
+ .+||+|++.++|+ .++.+++.+++.+++||+|||||+|||||+.|
T Consensus 72 ~--~~~~~Y~~~~~~~-------------~~~~~~~~~l~~~~~lL~P~~P~~aeeiw~~~ 117 (117)
T cd07959 72 Q--NDLDWYRERGGAG-------------MNKDLLRRFIEVWTRLLAPFAPHLAEEIWHEL 117 (117)
T ss_pred H--HHHHHHHHHhCcc-------------chHHHHHHHHHHHHHHHcCcchHhHHHHHhhC
Confidence 3 5899999998876 12458999999999999999999999999975
No 73
>PLN02286 arginine-tRNA ligase
Probab=99.60 E-value=2.3e-12 Score=156.04 Aligned_cols=214 Identities=10% Similarity=0.093 Sum_probs=132.6
Q ss_pred cccccchHHHHHHHHHhhhcCCC-C----ceEEEeccceeCCCCccceecCCcccCcchhhccccchhHHHhhhcC----
Q 001708 662 GHDILFFWVARMVMLGIKLGGEV-P----FTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLEGLHKRLEEG---- 732 (1022)
Q Consensus 662 G~Dil~fW~a~m~~~~~~l~~~~-P----fk~V~~Hg~v~D~~GrKMSKSlGNvIdP~dvI~g~~l~~l~~~l~~~---- 732 (1022)
|.||. ++|.++....-.+ |.. + --.++.+|||+..+|+||||..||+|...|+++... +...+.+.+.
T Consensus 335 g~~q~-~hf~~v~~~l~~l-G~~~~~~~~~l~h~~~g~V~~~~g~kmStR~G~~v~L~dlldea~-~~a~~~~~~~~~~~ 411 (576)
T PLN02286 335 DVGQQ-QHFDMVFKAAKRA-GWLPEDTYPRLEHVGFGLVLGEDGKRFRTRSGEVVRLVDLLDEAK-SRSKAALIERGKDS 411 (576)
T ss_pred eCcHH-HHHHHHHHHHHHc-CCCccccCCceEEEeeccEECCCCCcccCCCCCeeEHHHHHHHHH-HHHHHHHHhccCcc
Confidence 55543 4555555443333 322 1 135688999977889999999999999999998311 1111122211
Q ss_pred CCChHHHHHHHhcccCCCCCCCCCCCchHHHHHHHhccCCCcccccchhhhHH------------HHHHHHHHHHHHHHH
Q 001708 733 NLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLDIQRVVG------------YRQWCNKLWNAVRFS 800 (1022)
Q Consensus 733 nl~~~e~~~a~~~~~~~~~~~i~~~GaDaLR~~L~~~~~~~~Dinf~~~~~~~------------~r~f~nkl~N~~rf~ 800 (1022)
.++++|.+... ...|.||+||++++... ..++.||++.+.. +.+.|.-++++-.
T Consensus 412 ~~~~~~~~~~a-----------~~vg~~Airy~~L~~~~-~~~~~Fd~d~~l~~~g~t~pYlQYahAR~~SIlrKa~~-- 477 (576)
T PLN02286 412 EWTPEELEQAA-----------EAVGYGAVKYADLKNNR-LTNYTFSFDQMLDLKGNTAVYLLYAHARICSIIRKSGK-- 477 (576)
T ss_pred ccchhhHHHHH-----------HHhhhhhhhhhhhhcCC-CCCCccCHHHHHhhcCCChHHHHHHHHHHHHHHHhccC--
Confidence 23333332211 16899999999987655 4699999987532 2233333322210
Q ss_pred HhhcCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHhhhhHHHHHhhcccccCCCccc
Q 001708 801 MSKLGEGFVPPLKLHPHNLPFSCKWILSVLNKAISRTASSLNSYEFSDAASTVYSWWQYQFCDVFIEAIKPYFAGDNPAF 880 (1022)
Q Consensus 801 l~~l~~~~~p~~~~~~~~~~~~D~wil~~L~~~~~~v~~a~e~~~f~~a~~~i~~f~~~~l~~~Yle~~K~~l~~~~~~~ 880 (1022)
.. ..+.... ...-..+.++-++..|..+...+..+.++++.+..+..++++. ..|+.+|=+. +.+..++..
T Consensus 478 --~~-~~~~~~~--~~~l~~~~E~~L~~~l~~fp~vv~~a~~~~~P~~l~~Yl~~LA-~~F~~fY~~~--~Vl~~~~~~- 548 (576)
T PLN02286 478 --DI-DELKKTG--KIVLDHPDERALGLHLLQFPEVVEEACTDLLPNRLCEYLYNLS-EKFTKFYSNC--KVNGSEEET- 548 (576)
T ss_pred --cc-ccccccc--cccCCCHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHH-HHHHHHHhcC--ccCCCCchh-
Confidence 00 0010000 0111245677889999999999999999999999999999997 8888888542 555433222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 001708 881 ASERSAAQHVLWVCLETGLRLLH 903 (1022)
Q Consensus 881 ~~~r~~a~~~L~~~L~~~l~LL~ 903 (1022)
.|.........+|..++.||-
T Consensus 549 --aRL~L~~a~~~vL~~gL~LLG 569 (576)
T PLN02286 549 --SRLLLCEATAIVMRKCFHLLG 569 (576)
T ss_pred --HHHHHHHHHHHHHHHHHHhcC
Confidence 566666667777888888873
No 74
>cd07958 Anticodon_Ia_Leu_BEm Anticodon-binding domain of bacterial and eukaryotic mitochondrial leucyl tRNA synthetases. This domain is found in leucyl tRNA synthetases (LeuRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain. In contrast to other class Ia enzymes, the anticodon is not used as an identity element in LeuRS (with exceptions such as Saccharomyces cerevisiae and some other eukaryotes). No anticodon-binding site can be defined for this family, which includes bacterial and eukaryotic mitochondrial members, as well as LeuRS from the archaeal Halobacteria. LeuRS catalyzes the transfer of leucine to the 3'-end of its tRNA.
Probab=99.56 E-value=3.4e-14 Score=136.19 Aligned_cols=117 Identities=25% Similarity=0.345 Sum_probs=94.4
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHH
Q 001708 778 LDIQRVVGYRQWCNKLWNAVRFSMSKLGEGFVPPLKLHPHNLPFSCKWILSVLNKAISRTASSLNSYEFSDAASTVYSWW 857 (1022)
Q Consensus 778 f~~~~~~~~r~f~nkl~N~~rf~l~~l~~~~~p~~~~~~~~~~~~D~wil~~L~~~~~~v~~a~e~~~f~~a~~~i~~f~ 857 (1022)
||.+.+.++++|+|++||++++..+.. .|.. ........|+|++++++++++++.++|++|+|++|++.+++|+
T Consensus 1 w~~~~~~~~~n~l~R~~~~~~~~~~~~----~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~ 74 (117)
T cd07958 1 WSDSGVEGAYRFLNRVWRLVTELAEAL----AAPA--AAAELSEEDKELRRKLHKTIKKVTEDIERLRFNTAIAALMELV 74 (117)
T ss_pred CCcchhHHHHHHHHHHHHHHHHHHhhc----cccc--cccccchhhHHHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHH
Confidence 577889999999999999987643221 1211 0113456799999999999999999999999999999999996
Q ss_pred HhhhhHHHHHhhcccccCCCcccHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHhC
Q 001708 858 QYQFCDVFIEAIKPYFAGDNPAFASERSAAQHVLWVCLETGLRLLHPFMPFVTEELWQRL 917 (1022)
Q Consensus 858 ~~~l~~~Yle~~K~~l~~~~~~~~~~r~~a~~~L~~~L~~~l~LL~PfmPfitEelwq~L 917 (1022)
..+|.|++..+| .+.++..+++.+++||+|||||+||+||+.|
T Consensus 75 --~~~n~~~~~~~p---------------~~~~~~~~l~~~~~lL~P~~P~~aeei~~~l 117 (117)
T cd07958 75 --NALYKYKKKDAQ---------------HAAVLREALETLVLLLAPFAPHIAEELWEEL 117 (117)
T ss_pred --HHHHHhhccccc---------------hHHHHHHHHHHHHHHHcccchHHHHHHHhhC
Confidence 457888654322 3568899999999999999999999999875
No 75
>cd07957 Anticodon_Ia_Met Anticodon-binding domain of methionyl tRNA synthetases. This domain is found in methionyl tRNA synthetases (MetRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon (CAU). MetRS catalyzes the transfer of methionine to the 3'-end of its tRNA.
Probab=99.51 E-value=8.8e-14 Score=135.65 Aligned_cols=96 Identities=20% Similarity=0.280 Sum_probs=81.0
Q ss_pred CChhhHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHhhhhHHHHHhhcccccCCCcccHHHHHHHHHHHHHHHHHH
Q 001708 819 LPFSCKWILSVLNKAISRTASSLNSYEFSDAASTVYSWWQYQFCDVFIEAIKPYFAGDNPAFASERSAAQHVLWVCLETG 898 (1022)
Q Consensus 819 ~~~~D~wil~~L~~~~~~v~~a~e~~~f~~a~~~i~~f~~~~l~~~Yle~~K~~l~~~~~~~~~~r~~a~~~L~~~L~~~ 898 (1022)
....|+|++++++++++++.++|++|+|++|++.+++|+ ++||+|++..|||...+++. ....+.+..++..+++.+
T Consensus 34 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~--~~~n~y~~~~kpw~~~~~~~-~~~~~~~l~~~~~~l~~~ 110 (129)
T cd07957 34 LTEEDEELLEEAEELLEEVAEAMEELEFRKALEEIMELA--RAANKYIDETAPWKLAKEED-PERLATVLYVLLELLRIL 110 (129)
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH--HHHHhhhccCCCHHHHccCC-HHHHHHHHHHHHHHHHHH
Confidence 456799999999999999999999999999999999995 79999999999996543211 013344556777778999
Q ss_pred HHHHhchhhHHHHHHHHhC
Q 001708 899 LRLLHPFMPFVTEELWQRL 917 (1022)
Q Consensus 899 l~LL~PfmPfitEelwq~L 917 (1022)
++||+|||||+|||||+.|
T Consensus 111 ~~lL~P~~P~~aeei~~~l 129 (129)
T cd07957 111 AILLSPFMPETAEKILDQL 129 (129)
T ss_pred HHHhcCCCChHHHHHHHhC
Confidence 9999999999999999975
No 76
>cd07375 Anticodon_Ia_like Anticodon-binding domain of class Ia aminoacyl tRNA synthetases and similar domains. This domain is found in a variety of class Ia aminoacyl tRNA synthetases, C-terminal to the catalytic core domain. It recognizes and specifically binds to the anticodon of the tRNA. Aminoacyl tRNA synthetases catalyze the transfer of cognate amino acids to the 3'-end of their tRNAs by specifically recognizing cognate from non-cognate amino acids. Members include valyl-, leucyl-, isoleucyl-, cysteinyl-, arginyl-, and methionyl-tRNA synthethases. This superfamily also includes a domain from MshC, an enzyme in the mycothiol biosynthetic pathway.
Probab=99.27 E-value=5.1e-11 Score=113.44 Aligned_cols=116 Identities=23% Similarity=0.373 Sum_probs=92.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHhh
Q 001708 781 QRVVGYRQWCNKLWNAVRFSMSKLGEGFVPPLKLHPHNLPFSCKWILSVLNKAISRTASSLNSYEFSDAASTVYSWWQYQ 860 (1022)
Q Consensus 781 ~~~~~~r~f~nkl~N~~rf~l~~l~~~~~p~~~~~~~~~~~~D~wil~~L~~~~~~v~~a~e~~~f~~a~~~i~~f~~~~ 860 (1022)
+.+.+.++|+|++||+++|+.....+ ..|... .......|+|++++++.+++.+.++|++|+|+.|++.+++|+ ..
T Consensus 2 ~~v~~~~~~~n~~~r~~~~~~~~~~~-~~~~~~--~~~~~~~d~~l~~~~~~~~~~~~~~~e~~~~~~a~~~i~~~~-~~ 77 (117)
T cd07375 2 ERLKQARAFLNRLYRLLSFFRKALGG-TQPKWD--NELLEEADRELLARLQEFIKRTTNALEALDPTTAVQELFKFT-NE 77 (117)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCC-CCCCcC--hhhcCHhhHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH-Hh
Confidence 46788899999999999997655432 222110 012346799999999999999999999999999999999997 44
Q ss_pred hhHHHHHhhcccccCCCcccHHHHHHHHHHHHHHHHHHHHHHhchh
Q 001708 861 FCDVFIEAIKPYFAGDNPAFASERSAAQHVLWVCLETGLRLLHPFM 906 (1022)
Q Consensus 861 l~~~Yle~~K~~l~~~~~~~~~~r~~a~~~L~~~L~~~l~LL~Pfm 906 (1022)
+ |+|++..|||...+. ....+..+++.++..++++|+|||
T Consensus 78 ~-n~y~~~~~pw~~~~~-----~~~~~~~~~~~~l~~l~~lL~P~~ 117 (117)
T cd07375 78 L-NWYLDELKPALQTEE-----LREAVLAVLRAALVVLTKLLAPFT 117 (117)
T ss_pred c-cHHHHHhhHHHcCch-----hHHHHHHHHHHHHHHHHHHHcCCC
Confidence 4 999999999987542 344567789999999999999997
No 77
>PF00750 tRNA-synt_1d: tRNA synthetases class I (R); InterPro: IPR015945 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the core region of arginyl-tRNA synthetase (6.1.1.19 from EC), which has been crystallized and preliminary X-ray crystallographic analysis of yeast arginyl-tRNA synthetase-yeast tRNAArg complexes is available []. ; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1IQ0_A 1F7V_A 1F7U_A 1BS2_A 3GDZ_B.
Probab=99.21 E-value=3.7e-10 Score=129.72 Aligned_cols=138 Identities=24% Similarity=0.290 Sum_probs=87.5
Q ss_pred CCCCcEEEECCCCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeeeeeccCCccChhHHHHHH---HHHHHH---------
Q 001708 172 SSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVE---KKLMRE--------- 239 (1022)
Q Consensus 172 ~~k~~f~i~~pPPy~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG~D~~Glp~q~~vE---k~l~~~--------- 239 (1022)
...++.+|--.-|||||+|||||+++.+|.|+|+|-.+-.||+|.-..=....|..+-..+. +....+
T Consensus 17 ~~~~kv~VE~sSpNp~kplHvGHlR~~iiGd~laril~~~G~~V~r~nyigD~G~Q~~~l~~~~~~~~~~~~~~~~~~~~ 96 (354)
T PF00750_consen 17 GKGKKVVVEFSSPNPTKPLHVGHLRNTIIGDSLARILEAAGYDVTRENYIGDWGTQIGLLAASYKKFGDEELLEEDPIKH 96 (354)
T ss_dssp TTSEEEEEEE---BTTSS-BHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEBTTSHHHHHHHHHHHHHHHHHTSHSSCHHH
T ss_pred CCCCEEEEEecCCCCCCCCcCCcchhhhhhHHHHHHHHHcCCeeeeEEEECCCCHHHHHHHHHHHhhhhhhhcccccccc
Confidence 34567888889999999999999999999999999999999999998888888876533221 111000
Q ss_pred -------------hCCC----cccc---ChHHHHH-------HHHHHHHHHHHHHHHHHHHhccccc-cCCccccCChhh
Q 001708 240 -------------RKLT----RHDI---GREQFVS-------EVWKWKDEYGGTILRQQRRLGASLD-WSRECFTMDEKR 291 (1022)
Q Consensus 240 -------------~~~~----~~~~---g~e~f~~-------~~~~~~~~~~~~i~~ql~rlG~s~D-W~r~~~T~d~~~ 291 (1022)
.... ..++ .++.|.+ ....|.....+.++++|.+||+.+| |..+ .+-.+
T Consensus 97 l~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~~~~~~~~~~k~~l~~l~i~fDv~~~E---~Es~~ 173 (354)
T PF00750_consen 97 LEDLYVGANKRDEADEIAEKEPEELEEEAREYLKKLEQGDEEFRELWQKYILEWSKETLQRLYIRFDVWFDE---SESFY 173 (354)
T ss_dssp HHHHHHHHHHHHHHTTCSSGCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHHHHHHHHHHHHTT---SEEEEH---CHHHH
T ss_pred hhhhhhhhhhhhhhhhhccccccccccccceeeeecccccHHHHHHHHHHHHHHHHHHHHHHHHHhCcCccc---chhhh
Confidence 0000 0000 0011111 0123444467788999999999999 4322 33346
Q ss_pred HHHHHHHHHHHHHcCcEEEcc
Q 001708 292 SKAVTEAFVRLYKEGLIYRDL 312 (1022)
Q Consensus 292 ~~~v~~~F~~L~ekGlIyr~~ 312 (1022)
...+.+++.+|.++|++|+..
T Consensus 174 ~~~v~~vl~~L~e~g~~~~~d 194 (354)
T PF00750_consen 174 SGKVDEVLERLKEKGLLYESD 194 (354)
T ss_dssp TTHHHHHHHHHHCTTTEEEET
T ss_pred hhHHHHHHHHHHhCCcEEecC
Confidence 667899999999999999743
No 78
>cd00802 class_I_aaRS_core catalytic core domain of class I amino acyl-tRNA synthetase. Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.08 E-value=2.3e-10 Score=114.59 Aligned_cols=77 Identities=21% Similarity=0.201 Sum_probs=65.6
Q ss_pred EECCCCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeeeeeccCCccChhHHHHHHHHHHHHhCCCccccChHHHHHHHHH
Q 001708 179 IVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWK 258 (1022)
Q Consensus 179 i~~pPPy~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG~D~~Glp~q~~vEk~l~~~~~~~~~~~g~e~f~~~~~~ 258 (1022)
|+.+.|||||.|||||+++.++.|+++||.|++|++|.++.|+|.+|.++...+.+ .+.+ +++
T Consensus 1 ~~~~~p~~~~~~HlGh~~~~~~~d~~~r~lr~~G~~v~~~~~~dd~~~~~~~~a~~-----~~~~------------~~~ 63 (143)
T cd00802 1 TTFSGITPNGYLHIGHLRTIVTFDFLAQAYRKLGYKVRCIALIDDAGGLIGDPANK-----KGEN------------AKA 63 (143)
T ss_pred CEecCCCCCCCccHhHHHHHHHHHHHHHHHHHcCCCeEEEeeeCCCchHHHHHHHh-----cCCC------------HHH
Confidence 35678999999999999999999999999999999999999999999998766643 2333 347
Q ss_pred HHHHHHHHHHHHHH
Q 001708 259 WKDEYGGTILRQQR 272 (1022)
Q Consensus 259 ~~~~~~~~i~~ql~ 272 (1022)
|++.+.+.++++++
T Consensus 64 ~~~~~~~~~~~~~~ 77 (143)
T cd00802 64 FVERWIERIKEDVE 77 (143)
T ss_pred HHHHHHHHHHHHHH
Confidence 77888888888877
No 79
>PF01921 tRNA-synt_1f: tRNA synthetases class I (K); InterPro: IPR002904 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Lysyl-tRNA synthetase (6.1.1.6 from EC) is an alpha 2 homodimer that belong to both class I and class II. In eubacteria and eukaryota lysyl-tRNA synthetases belong to class II in the same family as aspartyl tRNA synthetase. The class Ic lysyl-tRNA synthetase family is present in archaea and in a number of bacterial groups that include the alphaproteobacteria and spirochaetes[]. A refined crystal structures shows that the active site of LysU is shaped to position the substrates for the nucleophilic attack of the lysine carboxylate on the ATP alpha-phosphate. No residues are directly involved in catalysis, but a number of highly conserved amino acids and three metal ions coordinate the substrates and stabilise the pentavalent transition state. A loop close to the catalytic pocket, disordered in the lysine-bound structure, becomes ordered upon adenine binding [].; GO: 0000166 nucleotide binding, 0004824 lysine-tRNA ligase activity, 0005524 ATP binding, 0006430 lysyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IRX_A.
Probab=98.60 E-value=5.7e-08 Score=109.81 Aligned_cols=100 Identities=15% Similarity=0.177 Sum_probs=61.9
Q ss_pred CCCcEEEECCCCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeeeeeccCCccC--------hhHHHHHHHHHHHHhCCCc
Q 001708 173 SKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAG--------IATQVVVEKKLMRERKLTR 244 (1022)
Q Consensus 173 ~k~~f~i~~pPPy~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG~D~~G--------lp~q~~vEk~l~~~~~~~~ 244 (1022)
++..+++-+| =.|+|.+|||+..-.+..|++.|=.|.+|.+|-++..||..- +|-+ ..++. .|+..
T Consensus 21 ~~~~~v~~sG-~sPSG~~HIGn~rEv~~~~~V~~al~~~g~~~r~i~~~DD~D~lRKvP~~~p~~-~~~~y----lg~Pl 94 (360)
T PF01921_consen 21 GKEPYVFASG-ISPSGLPHIGNFREVLRADMVARALRDRGKDVRLIYFSDDMDPLRKVPPNVPNP-ELEKY----LGKPL 94 (360)
T ss_dssp --SEEEEEEE-E--SS---HHHHHHHHHHHHHHHHHHTTT-EEEEEEEE-TTSB-----TTS-CC--CCCC----TTSBT
T ss_pred CCccEEEecC-CCCCCCcccccccchhhHHHHHHHHHHcCCCEEEEEEeecCCcccCCCCCCChH-HHHHh----cCCcc
Confidence 3556777776 578999999999999999999999999999999999999752 3322 22221 12222
Q ss_pred cccChHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q 001708 245 HDIGREQFVSEVWKWKDEYGGTILRQQRRLGASLDW 280 (1022)
Q Consensus 245 ~~~g~e~f~~~~~~~~~~~~~~i~~ql~rlG~s~DW 280 (1022)
..+. +-| ..+..|++.+...+.+.|..||+-+++
T Consensus 95 t~VP-dP~-G~~~SyaeH~~~~~~~~L~~~gie~e~ 128 (360)
T PF01921_consen 95 TRVP-DPF-GCHESYAEHFNAPFEEFLDEFGIEYEF 128 (360)
T ss_dssp TTSB--TT-SSSSCHHHHHHHHHHHHHHTTT---EE
T ss_pred ccCC-CCC-CCCccHHHHHHHHHHHHHHHcCCceEE
Confidence 1111 111 114578999999999999999998764
No 80
>COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis]
Probab=98.43 E-value=3.6e-06 Score=97.96 Aligned_cols=98 Identities=15% Similarity=0.192 Sum_probs=74.1
Q ss_pred CcEEEECCCCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeeeeeccCCccC--------hhHHHHHHHHHHHHhCCCccc
Q 001708 175 PSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAG--------IATQVVVEKKLMRERKLTRHD 246 (1022)
Q Consensus 175 ~~f~i~~pPPy~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG~D~~G--------lp~q~~vEk~l~~~~~~~~~~ 246 (1022)
..+++-+| =.|+|.+|||.++-.+..|++.|-.|-+|+.|.+++=||..- +|-+...|+.+ |+....
T Consensus 19 ~~~~v~tG-isPSG~~HIGn~rEv~t~d~V~ralr~~g~~~r~I~~~DD~D~lRkvp~~lp~~~~~e~Yl----g~Plt~ 93 (521)
T COG1384 19 DEYVVATG-ISPSGLIHIGNFREVLTADAVRRALRDRGDEVRLIYISDDYDPLRKVPRNLPDPEELEQYL----GMPLTE 93 (521)
T ss_pred CcEEEecC-cCCCCCcccccHHHHHHHHHHHHHHHHcCCceEEEEEccCCcccccCCCCCCChHHHHHHc----CCcccc
Confidence 45666666 589999999999999999999999999999999999998764 35445555544 443332
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 001708 247 IGREQFVSEVWKWKDEYGGTILRQQRRLGASLD 279 (1022)
Q Consensus 247 ~g~e~f~~~~~~~~~~~~~~i~~ql~rlG~s~D 279 (1022)
+.- -| -.|-.|++.+...+.+-|.++|+-+.
T Consensus 94 IPd-P~-G~~~Sya~hf~~~f~~~l~~~Gi~~E 124 (521)
T COG1384 94 IPD-PF-GCCDSYAEHFLRPFEEFLDEFGIEVE 124 (521)
T ss_pred CCC-Cc-cccchHHHHHHHHHHHHHHhcCCceE
Confidence 221 01 13568889999999999999997765
No 81
>cd09287 GluRS_non_core catalytic core domain of non-discriminating glutamyl-tRNA synthetase. Non-discriminating Glutamyl-tRNA synthetase (GluRS) cataytic core domain. These enzymes attach Glu to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=97.92 E-value=2.2e-05 Score=85.05 Aligned_cols=92 Identities=22% Similarity=0.307 Sum_probs=65.6
Q ss_pred CCCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeeeeeccCCccChhHHHHHHHHHHHHhCCCccccChHHHHHHHHHHHH
Q 001708 182 PPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWKWKD 261 (1022)
Q Consensus 182 pPPy~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG~D~~Glp~q~~vEk~l~~~~~~~~~~~g~e~f~~~~~~~~~ 261 (1022)
=+|.|||.||||||++.++.++++| ++++.|+-=+|..--+ +. ....
T Consensus 6 faPsPtG~lHiG~~rtal~~~l~Ar-----~~~G~~ilRieDtD~~----------------r~------------~~~~ 52 (240)
T cd09287 6 FAPNPNGPLHLGHARAAILNGEYAK-----MYGGKFILRFDDTDPR----------------TK------------RPDP 52 (240)
T ss_pred CCCCCCCCccHHHHHHHHHHHHHHH-----HcCCEEEEeeCcCCCC----------------cc------------cchH
Confidence 3799999999999999999999999 4555555555543111 00 0123
Q ss_pred HHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHHHcCcEEE
Q 001708 262 EYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYR 310 (1022)
Q Consensus 262 ~~~~~i~~ql~rlG~s~DW~r~~~T~d~~~~~~v~~~F~~L~ekGlIyr 310 (1022)
.+.+.|.++|+.||+ +|+..++.+ ++.....++..+|.++|++|.
T Consensus 53 ~~~~~i~~dL~wLGl--~~d~~~~qS--~r~~~y~~~~~~Li~~G~aY~ 97 (240)
T cd09287 53 EAYDMIPEDLEWLGV--KWDEVVIAS--DRIELYYEYARKLIEMGGAYV 97 (240)
T ss_pred HHHHHHHHHHHHcCC--CCCCccchh--ccHHHHHHHHHHHHHcCCccc
Confidence 344568999999998 777665543 445556677889999999997
No 82
>PRK04156 gltX glutamyl-tRNA synthetase; Provisional
Probab=97.79 E-value=6.4e-05 Score=90.53 Aligned_cols=97 Identities=25% Similarity=0.309 Sum_probs=69.1
Q ss_pred EECCCCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeeeeeccCCccChhHHHHHHHHHHHHhCCCccccChHHHHHHHHH
Q 001708 179 IVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWK 258 (1022)
Q Consensus 179 i~~pPPy~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG~D~~Glp~q~~vEk~l~~~~~~~~~~~g~e~f~~~~~~ 258 (1022)
++==||+|||.||||||++.++.+.++| +..|.-++..=-+|.- +.+
T Consensus 103 ~tRFaPsPtG~LHIGharaalln~~~Ar--~~~G~~iLRidDTDpk-----------------~~R-------------- 149 (567)
T PRK04156 103 VMRFAPNPSGPLHLGHARAAILNDEYAK--MYGGKFILRFEDTDPR-----------------TKR-------------- 149 (567)
T ss_pred EEEeCCCCCCCccHHHHHHHHHHHHHHH--HcCCEEEEeEccCCCC-----------------ccc--------------
Confidence 3335899999999999999999999999 3345544444433320 011
Q ss_pred HHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHHHcCcEEEcc
Q 001708 259 WKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDL 312 (1022)
Q Consensus 259 ~~~~~~~~i~~ql~rlG~s~DW~r~~~T~d~~~~~~v~~~F~~L~ekGlIyr~~ 312 (1022)
...++.+.|.++|+.||+ +|+..++++ +|.....+...+|.++|+.|...
T Consensus 150 ~~~e~~~~I~edL~wLGl--~wD~~~~qS--dr~~~y~~~a~~Li~~G~AY~C~ 199 (567)
T PRK04156 150 PDPEAYDMILEDLKWLGV--KWDEVVIQS--DRLEIYYEYARKLIEMGGAYVCT 199 (567)
T ss_pred chHHHHHHHHHHHHHcCC--CCCCccCcc--cCHHHHHHHHHHHHHcCCCccCC
Confidence 123445789999999997 676776654 45566777888999999999653
No 83
>PLN03233 putative glutamate-tRNA ligase; Provisional
Probab=97.48 E-value=0.00037 Score=83.12 Aligned_cols=96 Identities=25% Similarity=0.357 Sum_probs=72.0
Q ss_pred EEECCCCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeeeeeccCCccChhHHHHHHHHHHHHhCCCccccChHHHHHHHH
Q 001708 178 VIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVW 257 (1022)
Q Consensus 178 ~i~~pPPy~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG~D~~Glp~q~~vEk~l~~~~~~~~~~~g~e~f~~~~~ 257 (1022)
+++==||.|||.||||||.+.++...++|-+ .|.-+|..==+|- .+.
T Consensus 12 v~tRFAPsPtG~LHiGharaAlln~l~Ar~~--gG~~iLRiEDTDp-------------------~R~------------ 58 (523)
T PLN03233 12 IVTRFPPEPSGYLHIGHAKAALLNDYYARRY--KGRLILRFDDTNP-------------------SKE------------ 58 (523)
T ss_pred EEEeeCCCCCCcccHHHHHHHHHHHHHHHHh--CCEEEEEECCCCC-------------------Ccc------------
Confidence 5666789999999999999999999999753 5665555433332 111
Q ss_pred HHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHHHcCcEEEcc
Q 001708 258 KWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDL 312 (1022)
Q Consensus 258 ~~~~~~~~~i~~ql~rlG~s~DW~r~~~T~d~~~~~~v~~~F~~L~ekGlIyr~~ 312 (1022)
..++.+.|.++|+-||+. |+..|++. +|-..-.+...+|.++|++|...
T Consensus 59 --~~e~~~~I~~dL~WLGl~--wD~~~~qS--dr~~~y~~~a~~Li~~G~AY~C~ 107 (523)
T PLN03233 59 --KAEFEESIIEDLGKIEIK--PDSVSFTS--DYFEPIRCYAIILIEEGLAYMDD 107 (523)
T ss_pred --chHHHHHHHHHHHHhCCC--CCCCcccc--ccHHHHHHHHHHHHHcCCeEecC
Confidence 345678999999999965 55766664 44566778889999999999764
No 84
>TIGR03838 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthetase. This protein resembles a shortened glutamyl-tRNA ligase, but its purpose is to modify tRNA(Asp) at a queuosine position in the anticodon rather than to charge a tRNA with its cognate amino acid.
Probab=97.47 E-value=0.00037 Score=77.25 Aligned_cols=91 Identities=24% Similarity=0.352 Sum_probs=67.9
Q ss_pred CCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeeeeeccCCccChhHHHHHHHHHHHHhCCCccccChHHHHHHHHHHHHH
Q 001708 183 PPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWKWKDE 262 (1022)
Q Consensus 183 PPy~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG~D~~Glp~q~~vEk~l~~~~~~~~~~~g~e~f~~~~~~~~~~ 262 (1022)
+|.|||.||||||++.++...++| +..|.=+|.+==+|.. |. ..+
T Consensus 6 APSPtG~lHiG~~rtAL~n~l~Ar--~~gG~~iLRiEDtD~~-------------------R~--------------~~~ 50 (272)
T TIGR03838 6 APSPSGPLHFGSLVAALGSYLDAR--AHGGRWLVRIEDLDPP-------------------RE--------------VPG 50 (272)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHH--HhCCEEEEEeCcCCCC-------------------CC--------------ChH
Confidence 799999999999999999999998 4467776666555541 10 234
Q ss_pred HHHHHHHHHHHhccccccCCc-cccCChhhHHHHHHHHHHHHHcCcEEEcc
Q 001708 263 YGGTILRQQRRLGASLDWSRE-CFTMDEKRSKAVTEAFVRLYKEGLIYRDL 312 (1022)
Q Consensus 263 ~~~~i~~ql~rlG~s~DW~r~-~~T~d~~~~~~v~~~F~~L~ekGlIyr~~ 312 (1022)
+.+.|.++|+.||+. |+.. |+.. ++...-.++..+|.++|++|...
T Consensus 51 ~~~~I~~dL~wLGl~--wDe~~~~QS--~r~~~Y~~~~~~L~~~G~aY~C~ 97 (272)
T TIGR03838 51 AADDILRTLEAYGLH--WDGEVVYQS--QRHALYQAALDRLLAAGLAYPCQ 97 (272)
T ss_pred HHHHHHHHHHHcCCC--CCCCeeeee--CCHHHHHHHHHHHHHcCCEEecC
Confidence 567899999999965 5543 4443 34456677888999999999764
No 85
>TIGR00463 gltX_arch glutamyl-tRNA synthetase, archaeal and eukaryotic family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the eukaryotic cytosolic and archaeal forms of the enzyme. In some eukaryotes, the glutamyl-tRNA synthetase is part of a longer, multifunctional aminoacyl-tRNA ligase. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu).
Probab=97.47 E-value=0.00049 Score=82.95 Aligned_cols=96 Identities=24% Similarity=0.292 Sum_probs=70.6
Q ss_pred EEECCCCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeeeeeccCCccChhHHHHHHHHHHHHhCCCccccChHHHHHHHH
Q 001708 178 VIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVW 257 (1022)
Q Consensus 178 ~i~~pPPy~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG~D~~Glp~q~~vEk~l~~~~~~~~~~~g~e~f~~~~~ 257 (1022)
+++==||.|||.||||||.+.++.+.++| ...|.-++..==+|- + +.
T Consensus 94 vvtRFaPsPtG~LHiGharaalln~~~Ar--~~~G~~iLRidDTDp---~----------------R~------------ 140 (560)
T TIGR00463 94 VVMRFAPNPSGPLHIGHARAAILNQYFAK--KYKGKLIIRFDDTDP---R----------------RV------------ 140 (560)
T ss_pred eEEEeCCCCCCCccHHHHHHHHHHHHHHH--hcCCEEEEEeCcCCc---c----------------cc------------
Confidence 56667899999999999999999999997 334554444333332 1 11
Q ss_pred HHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHHHcCcEEEcc
Q 001708 258 KWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDL 312 (1022)
Q Consensus 258 ~~~~~~~~~i~~ql~rlG~s~DW~r~~~T~d~~~~~~v~~~F~~L~ekGlIyr~~ 312 (1022)
..++.+.|.++|+.||+. |+..+++. +|.....+...+|.++|+.|...
T Consensus 141 --~~e~~~~I~edL~wLGi~--~d~~~~qS--d~~~~y~~~a~~Li~~G~AY~C~ 189 (560)
T TIGR00463 141 --KPEAYDMILEDLDWLGVK--GDEVVYQS--DRIEEYYDYCRKLIEMGKAYVCD 189 (560)
T ss_pred --cHHHHHHHHHHHHHcCCC--CCcccccc--ccHHHHHHHHHHHHHcCCceeec
Confidence 234668899999999987 55655544 45667788889999999999754
No 86
>PTZ00437 glutaminyl-tRNA synthetase; Provisional
Probab=97.46 E-value=0.00044 Score=82.79 Aligned_cols=96 Identities=24% Similarity=0.251 Sum_probs=69.4
Q ss_pred EEECCCCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeeeeeccCCccChhHHHHHHHHHHHHhCCCccccChHHHHHHHH
Q 001708 178 VIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVW 257 (1022)
Q Consensus 178 ~i~~pPPy~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG~D~~Glp~q~~vEk~l~~~~~~~~~~~g~e~f~~~~~ 257 (1022)
+++==||.|||.||||||++.++...++|.+ .|.-+|..==+|. .+
T Consensus 52 v~tRFaPsPtG~LHiGharaalln~~~Ar~~--gG~~iLRiEDTDp-------------------~r------------- 97 (574)
T PTZ00437 52 PYFRFPPEPNGFLHIGHAKSMNLNFGSARAH--GGKCYLRYDDTNP-------------------ET------------- 97 (574)
T ss_pred EEEEeCCCCCCcccHHHHHHHHHHHHHHHHh--CCEEEEEECCCCc-------------------cc-------------
Confidence 4566689999999999999999999999864 5655555433332 01
Q ss_pred HHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHHHcCcEEEcc
Q 001708 258 KWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDL 312 (1022)
Q Consensus 258 ~~~~~~~~~i~~ql~rlG~s~DW~r~~~T~d~~~~~~v~~~F~~L~ekGlIyr~~ 312 (1022)
-..++.+.|.++|+.||+. |+..+++ ..|.....+...+|.++|++|...
T Consensus 98 -~~~e~~~~I~~dL~wLGi~--~D~~~~q--S~y~~~~ye~A~~Li~~G~AY~C~ 147 (574)
T PTZ00437 98 -EEQVYIDAIMEMVKWMGWK--PDWVTFS--SDYFDQLHEFAVQLIKDGKAYVDH 147 (574)
T ss_pred -cChHHHHHHHHHHHHcCCC--CCCCCcC--chhHHHHHHHHHHHHHcCCEEEcC
Confidence 0245668899999999965 5565544 345555567778999999999754
No 87
>PTZ00402 glutamyl-tRNA synthetase; Provisional
Probab=97.46 E-value=0.00038 Score=84.03 Aligned_cols=93 Identities=27% Similarity=0.456 Sum_probs=69.4
Q ss_pred EEECCCCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeeeeeccCCccChhHHHHHHHHHHHHhCCCccccChHHHHHHHH
Q 001708 178 VIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVW 257 (1022)
Q Consensus 178 ~i~~pPPy~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG~D~~Glp~q~~vEk~l~~~~~~~~~~~g~e~f~~~~~ 257 (1022)
+++==||.|||.||||||.+.++...++|-+ .|.-+|..==+|- .+.
T Consensus 53 v~tRFAPsPtGyLHIGharaAllN~l~Ar~~--gG~~iLRiEDTDp-------------------~R~------------ 99 (601)
T PTZ00402 53 VVTRFPPEASGFLHIGHAKAALINSMLADKY--KGKLVFRFDDTNP-------------------SKE------------ 99 (601)
T ss_pred eEEeeCCCCCCcccHHHHHHHHHHHHHHHHh--CCEEEEEEcCCCC-------------------ccc------------
Confidence 5666689999999999999999999999854 5655544333331 111
Q ss_pred HHHHHHHHHHHHHHHHhccccccCC-ccccCChhhHHHHHHHHHHHHHcCcEE
Q 001708 258 KWKDEYGGTILRQQRRLGASLDWSR-ECFTMDEKRSKAVTEAFVRLYKEGLIY 309 (1022)
Q Consensus 258 ~~~~~~~~~i~~ql~rlG~s~DW~r-~~~T~d~~~~~~v~~~F~~L~ekGlIy 309 (1022)
..++.+.|.++|+.||+ +|+. .+++.| |-..-.++..+|.++|+.|
T Consensus 100 --~~e~~d~IleDL~WLGl--~wDe~~~~QSd--r~d~y~e~a~~Li~~G~AY 146 (601)
T PTZ00402 100 --KEHFEQAILDDLATLGV--SWDVGPTYSSD--YMDLMYEKAEELIKKGLAY 146 (601)
T ss_pred --CHHHHHHHHHHHHHCCC--CCCCceeeccc--cHHHHHHHHHHHHHcCCEE
Confidence 24567899999999996 6665 566544 5566778889999999999
No 88
>PLN02907 glutamate-tRNA ligase
Probab=97.42 E-value=0.00059 Score=85.12 Aligned_cols=94 Identities=29% Similarity=0.426 Sum_probs=71.0
Q ss_pred EEECCCCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeeeeeccCCccChhHHHHHHHHHHHHhCCCccccChHHHHHHHH
Q 001708 178 VIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVW 257 (1022)
Q Consensus 178 ~i~~pPPy~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG~D~~Glp~q~~vEk~l~~~~~~~~~~~g~e~f~~~~~ 257 (1022)
+++==||.|||.||||||.+.++...++| +..|.-+|..==+|- ++.
T Consensus 214 v~tRFaPsPtG~LHiG~ar~al~n~~~Ar--~~~G~~iLR~eDTdp-------------------~r~------------ 260 (722)
T PLN02907 214 VCTRFPPEPSGYLHIGHAKAALLNQYFAR--RYKGKLIVRFDDTNP-------------------SKE------------ 260 (722)
T ss_pred eEEeeCCCCCCcccHHHHHHHHHHHHHHH--HhCCEEEEEecCCCC-------------------CcC------------
Confidence 66777999999999999999999999998 345665555433332 111
Q ss_pred HHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHHHcCcEEE
Q 001708 258 KWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYR 310 (1022)
Q Consensus 258 ~~~~~~~~~i~~ql~rlG~s~DW~r~~~T~d~~~~~~v~~~F~~L~ekGlIyr 310 (1022)
..+|.+.|.++|+-||+. |+..+++.| |-..-.+...+|.++|+.|.
T Consensus 261 --~~e~~~~I~~dl~wLG~~--~d~~~~qS~--r~~~y~~~a~~Li~~G~aY~ 307 (722)
T PLN02907 261 --SDEFVENILKDIETLGIK--YDAVTYTSD--YFPQLMEMAEKLIKEGKAYV 307 (722)
T ss_pred --ChHHHHHHHHHHHHcCCC--CCCcccccc--cHHHHHHHHHHHHHcCCeee
Confidence 245678999999999964 557776654 44566788899999999996
No 89
>PF00749 tRNA-synt_1c: tRNA synthetases class I (E and Q), catalytic domain; InterPro: IPR020058 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of Escherichia coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure []. ; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 2HZ7_A 2CFO_A 4A91_A 1NZJ_A 1N78_A 1G59_C 2CV2_A 2CV1_A 2CV0_B 1GLN_A ....
Probab=97.39 E-value=0.00054 Score=77.78 Aligned_cols=92 Identities=30% Similarity=0.417 Sum_probs=62.5
Q ss_pred CCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeeeeeccCCccChhHHHHHHHHHHHHhCCCccccChHHHHHHHHHHHHH
Q 001708 183 PPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWKWKDE 262 (1022)
Q Consensus 183 PPy~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG~D~~Glp~q~~vEk~l~~~~~~~~~~~g~e~f~~~~~~~~~~ 262 (1022)
+|.|||.||||||++.++.-.++| +..|.=++.+==+|. +|. ..+
T Consensus 7 APsPtG~lHiG~~r~al~n~~~Ar--~~~G~~iLRieDtD~-------------------~R~--------------~~~ 51 (314)
T PF00749_consen 7 APSPTGYLHIGHARTALLNYLFAR--KYGGKFILRIEDTDP-------------------ERC--------------RPE 51 (314)
T ss_dssp ---SSSS-BHHHHHHHHHHHHHHH--HTTSEEEEEEETSST-------------------TTC--------------HHH
T ss_pred CCCCCCCcccchhHHHHHHHHHHh--ccCceEEEecccccc-------------------ccc--------------hhh
Confidence 799999999999999999999998 456766666555543 111 235
Q ss_pred HHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHHHcCcEEEcc
Q 001708 263 YGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDL 312 (1022)
Q Consensus 263 ~~~~i~~ql~rlG~s~DW~r~~~T~d~~~~~~v~~~F~~L~ekGlIyr~~ 312 (1022)
+.+.|.+.|+.||+..| ..+|+.. ++...-.++..+|.++|++|...
T Consensus 52 ~~~~i~~~L~wlGl~~D-~~~~~QS--~r~~~Y~~~~~~L~~~g~aY~C~ 98 (314)
T PF00749_consen 52 FYDAILEDLRWLGLEWD-YGPYYQS--DRLEIYQEAAEKLIDKGKAYPCF 98 (314)
T ss_dssp HHHHHHHHHHHHT---S-TCEEEGG--GGHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHhheeEEEEecC-CeEEeHH--HHHHHHHHHHHHHhhcCCCcccc
Confidence 56789999999996665 2455543 44456677788999999999764
No 90
>TIGR00440 glnS glutaminyl-tRNA synthetase. This protein is a relatively rare aminoacyl-tRNA synthetase, found in the cytosolic compartment of eukaryotes, in E. coli and a number of other Gram-negative Bacteria, and in Deinococcus radiodurans. In contrast, the pathway to Gln-tRNA in mitochondria, Archaea, Gram-positive Bacteria, and a number of other lineages is by misacylation with Glu followed by transamidation to correct the aminoacylation to Gln. This enzyme is a class I tRNA synthetase (hit by the pfam model tRNA-synt_1c) and is quite closely related to glutamyl-tRNA synthetases.
Probab=97.30 E-value=0.00073 Score=80.80 Aligned_cols=94 Identities=26% Similarity=0.359 Sum_probs=66.1
Q ss_pred CCCCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeeeeeccCCccChhHHHHHHHHHHHHhCCCccccChHHHHHHHHHHH
Q 001708 181 LPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWKWK 260 (1022)
Q Consensus 181 ~pPPy~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG~D~~Glp~q~~vEk~l~~~~~~~~~~~g~e~f~~~~~~~~ 260 (1022)
==||.|||.||||||++.++...++|- ..|.-+|..==+|- .+. .
T Consensus 4 RFaPsPtG~LHiG~ar~al~n~~~A~~--~~G~~iLRieDTd~-------------------~r~--------------~ 48 (522)
T TIGR00440 4 RFPPEPNGYLHIGHAKSICLNFGYAKY--YNGTCNLRFDDTNP-------------------VKE--------------D 48 (522)
T ss_pred ecCCCCCCcccHHHHHHHHHHHHHHHH--hCCEEEEEEcCCCc-------------------ccC--------------C
Confidence 348999999999999999999999984 35665555444432 111 2
Q ss_pred HHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHHHcCcEEEcc
Q 001708 261 DEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDL 312 (1022)
Q Consensus 261 ~~~~~~i~~ql~rlG~s~DW~r~~~T~d~~~~~~v~~~F~~L~ekGlIyr~~ 312 (1022)
.++.+.|.++|+-||+..| ...+++.| |-....+.-.+|.++|+.|...
T Consensus 49 ~e~~~~I~~dL~wLG~~~d-~~~~~qS~--~~~~~~~~a~~Li~~G~AY~c~ 97 (522)
T TIGR00440 49 PEYVESIKRDVEWLGFKWE-GKIRYSSD--YFDELYRYAEELIKKGLAYVDE 97 (522)
T ss_pred hHHHHHHHHHHHHcCCCCC-CCceEccc--cHHHHHHHHHHHHHcCCEEeec
Confidence 4567899999999996554 34455543 2333345558999999999764
No 91
>PLN02859 glutamine-tRNA ligase
Probab=97.25 E-value=0.0011 Score=82.22 Aligned_cols=96 Identities=27% Similarity=0.310 Sum_probs=68.7
Q ss_pred EEECCCCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeeeeeccCCccChhHHHHHHHHHHHHhCCCccccChHHHHHHHH
Q 001708 178 VIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVW 257 (1022)
Q Consensus 178 ~i~~pPPy~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG~D~~Glp~q~~vEk~l~~~~~~~~~~~g~e~f~~~~~ 257 (1022)
+++==||.|||.||||||.+.++...++|.+ .|.-.|..==+|- ++.
T Consensus 265 V~tRFaPsPtG~LHiGharaallN~~~Ar~~--~G~~~LRieDTdp-------------------~r~------------ 311 (788)
T PLN02859 265 VYTRFPPEPNGYLHIGHAKAMFVDFGLAKER--GGCCYLRFDDTNP-------------------EAE------------ 311 (788)
T ss_pred eEEEeCCCCCCcccHHHHHHHHHHHHHHHHh--CCEEEEEecCCCC-------------------Ccc------------
Confidence 5566699999999999999999999999874 5655554433332 111
Q ss_pred HHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHHHcCcEEEcc
Q 001708 258 KWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDL 312 (1022)
Q Consensus 258 ~~~~~~~~~i~~ql~rlG~s~DW~r~~~T~d~~~~~~v~~~F~~L~ekGlIyr~~ 312 (1022)
..+|.+.|.++|+-|| ++|+..+++.|- -....+.-.+|.++|+.|...
T Consensus 312 --~~e~~~~I~edL~WLG--~~~d~~~~qSd~--f~~~Y~~A~~Li~~G~AY~C~ 360 (788)
T PLN02859 312 --KKEYIDHIEEIVEWMG--WEPFKITYTSDY--FQELYELAVELIRRGHAYVDH 360 (788)
T ss_pred --chHHHHHHHHHHHHcC--CCCCCcccccHh--HHHHHHHHHHHHHcCCeEecc
Confidence 3456789999999999 567777776543 212223456799999999754
No 92
>PRK05347 glutaminyl-tRNA synthetase; Provisional
Probab=97.21 E-value=0.001 Score=79.83 Aligned_cols=97 Identities=27% Similarity=0.314 Sum_probs=67.7
Q ss_pred EEECCCCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeeeeeccCCccChhHHHHHHHHHHHHhCCCccccChHHHHHHHH
Q 001708 178 VIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVW 257 (1022)
Q Consensus 178 ~i~~pPPy~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG~D~~Glp~q~~vEk~l~~~~~~~~~~~g~e~f~~~~~ 257 (1022)
+++==||.|||.||||||++.++...++|-+ .|.-+|..==+|- ++.
T Consensus 30 v~tRFaPsPtG~LHiG~ar~al~n~~~Ar~~--~G~~iLRieDTd~-------------------~r~------------ 76 (554)
T PRK05347 30 VHTRFPPEPNGYLHIGHAKSICLNFGLAQDY--GGKCNLRFDDTNP-------------------EKE------------ 76 (554)
T ss_pred eEEEeCCCCCCcccHHHHHHHHHHHHHHHHh--CCEEEEEECCCCC-------------------CcC------------
Confidence 5666789999999999999999999999853 5655555433332 111
Q ss_pred HHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHHHcCcEEEcc
Q 001708 258 KWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDL 312 (1022)
Q Consensus 258 ~~~~~~~~~i~~ql~rlG~s~DW~r~~~T~d~~~~~~v~~~F~~L~ekGlIyr~~ 312 (1022)
..++.+.|.++|+-||+..| ...+++.| |-....+.-.+|.++|+.|...
T Consensus 77 --~~e~~~~I~~dL~wLGi~~d-~~~~~qS~--r~~~~y~~a~~Li~~G~AY~c~ 126 (554)
T PRK05347 77 --DQEYVDSIKEDVRWLGFDWS-GELRYASD--YFDQLYEYAVELIKKGKAYVDD 126 (554)
T ss_pred --ChHHHHHHHHHHHHcCCCCC-CCceeeec--CHHHHHHHHHHHHHcCCEeeCC
Confidence 24566889999999997654 34566544 2222334446999999999764
No 93
>PRK05710 glutamyl-Q tRNA(Asp) synthetase; Reviewed
Probab=97.21 E-value=0.0011 Score=74.40 Aligned_cols=95 Identities=25% Similarity=0.326 Sum_probs=67.6
Q ss_pred EECCCCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeeeeeccCCccChhHHHHHHHHHHHHhCCCccccChHHHHHHHHH
Q 001708 179 IVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWK 258 (1022)
Q Consensus 179 i~~pPPy~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG~D~~Glp~q~~vEk~l~~~~~~~~~~~g~e~f~~~~~~ 258 (1022)
++==+|.|||.|||||+++.++.-.++|-+ .|.=++.+==+|. +|.
T Consensus 7 ~~RFAPSPTG~LHlG~~rtAL~n~l~Ar~~--~G~~iLRiEDtD~-------------------~R~------------- 52 (299)
T PRK05710 7 IGRFAPSPSGPLHFGSLVAALGSWLDARAH--GGRWLLRIEDIDP-------------------PRE------------- 52 (299)
T ss_pred eEEeCcCCCCcccHHHHHHHHHHHHHHHHc--CCEEEEEECcCCC-------------------Ccc-------------
Confidence 344579999999999999999999988754 4555554433332 111
Q ss_pred HHHHHHHHHHHHHHHhccccccCC-ccccCChhhHHHHHHHHHHHHHcCcEEEcc
Q 001708 259 WKDEYGGTILRQQRRLGASLDWSR-ECFTMDEKRSKAVTEAFVRLYKEGLIYRDL 312 (1022)
Q Consensus 259 ~~~~~~~~i~~ql~rlG~s~DW~r-~~~T~d~~~~~~v~~~F~~L~ekGlIyr~~ 312 (1022)
..++.+.|.++|+.||+ ||+. .|+..+ +...-.++..+|.++|++|.-.
T Consensus 53 -~~~~~~~I~~dL~wlGl--~wDe~~~~QS~--r~~~Y~~~~~~L~~~G~aY~C~ 102 (299)
T PRK05710 53 -VPGAADAILADLEWLGL--HWDGPVLYQSQ--RHDAYRAALDRLRAQGLVYPCF 102 (299)
T ss_pred -chHHHHHHHHHHHHCCC--CCCCCceEeec--cHHHHHHHHHHHHHCCCceecC
Confidence 23456789999999996 5653 566443 4456677888999999999753
No 94
>cd00807 GlnRS_core catalytic core domain of glutaminyl-tRNA synthetase. Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Gln to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. GlnRS contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=97.19 E-value=0.0014 Score=70.99 Aligned_cols=92 Identities=23% Similarity=0.264 Sum_probs=66.4
Q ss_pred ECCCCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeeeeeccCCccChhHHHHHHHHHHHHhCCCccccChHHHHHHHHHH
Q 001708 180 VLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWKW 259 (1022)
Q Consensus 180 ~~pPPy~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG~D~~Glp~q~~vEk~l~~~~~~~~~~~g~e~f~~~~~~~ 259 (1022)
+==+|.|||.||+||+++.++.-.++|-+ .|.=++.+==+|- +| -
T Consensus 4 ~RFAPsPtG~lHlG~~~~al~~~l~Ar~~--~G~~iLRieDtD~-------------------~R--------------~ 48 (238)
T cd00807 4 TRFPPEPNGYLHIGHAKAILLNFGYAKKY--GGRCNLRFDDTNP-------------------EK--------------E 48 (238)
T ss_pred EecCCCCCCcccHHHHHHHHHHHHHHHHh--CCEEEEEecCCCC-------------------cc--------------c
Confidence 33479999999999999999999998753 5655544333332 11 1
Q ss_pred HHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHHHcCcEEE
Q 001708 260 KDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYR 310 (1022)
Q Consensus 260 ~~~~~~~i~~ql~rlG~s~DW~r~~~T~d~~~~~~v~~~F~~L~ekGlIyr 310 (1022)
..++.+.|.++|+.||+. |+..++.. ++...-.++..+|.++|++|.
T Consensus 49 ~~~~~~~I~~dL~wlGl~--wD~~~~QS--~r~~~Y~~~~~~L~~~g~aY~ 95 (238)
T cd00807 49 EEEYVDSIKEDVKWLGIK--PYKVTYAS--DYFDQLYEYAEQLIKKGKAYV 95 (238)
T ss_pred chHHHHHHHHHHHHcCCC--CCCceecc--cCHHHHHHHHHHHHHcCCeec
Confidence 245567899999999965 54655543 444566788889999999998
No 95
>PRK14895 gltX glutamyl-tRNA synthetase; Provisional
Probab=97.14 E-value=0.0014 Score=78.34 Aligned_cols=95 Identities=29% Similarity=0.391 Sum_probs=70.4
Q ss_pred EECCCCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeeeeeccCCccChhHHHHHHHHHHHHhCCCccccChHHHHHHHHH
Q 001708 179 IVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWK 258 (1022)
Q Consensus 179 i~~pPPy~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG~D~~Glp~q~~vEk~l~~~~~~~~~~~g~e~f~~~~~~ 258 (1022)
.+==.|.|||.||||||++.++.-.++| +..|.=++.+==+|. +|
T Consensus 6 rtRFAPSPTG~lHiG~artAL~n~l~Ar--~~gG~fiLRIEDTD~-------------------~R-------------- 50 (513)
T PRK14895 6 ITRFAPSPTGFLHIGSARTALFNYLFAR--HHNGKFLLRIEDTDK-------------------ER-------------- 50 (513)
T ss_pred eEeeCCCCCCCccHHHHHHHHHHHHHHH--HcCCEEEEEECCCCc-------------------cc--------------
Confidence 3444799999999999999999999998 457777776655553 11
Q ss_pred HHHHHHHHHHHHHHHhccccccC-CccccCChhhHHHHHHHHHHHHHcCcEEEcc
Q 001708 259 WKDEYGGTILRQQRRLGASLDWS-RECFTMDEKRSKAVTEAFVRLYKEGLIYRDL 312 (1022)
Q Consensus 259 ~~~~~~~~i~~ql~rlG~s~DW~-r~~~T~d~~~~~~v~~~F~~L~ekGlIyr~~ 312 (1022)
-..++.+.|.+.|+.||+ ||+ .+|+.++ +...-.++..+|.++|..|+..
T Consensus 51 ~~~~~~~~i~~~L~WLGl--~wDe~py~QSe--R~~~Y~~~a~~Li~~G~AY~Cf 101 (513)
T PRK14895 51 STKEAVEAIFSGLKWLGL--DWNGEVIFQSK--RNNLYKEAALKLLQNGKAYYCF 101 (513)
T ss_pred cChHHHHHHHHHHHHcCC--CCCCCceeEeC--cHHHHHHHHHHHHHcCCeEEec
Confidence 124556789999999996 565 4566554 2345677888999999999764
No 96
>COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=97.13 E-value=0.0015 Score=77.61 Aligned_cols=96 Identities=30% Similarity=0.366 Sum_probs=70.9
Q ss_pred EEECCCCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeeeeeccCCccChhHHHHHHHHHHHHhCCCccccChHHHHHHHH
Q 001708 178 VIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVW 257 (1022)
Q Consensus 178 ~i~~pPPy~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG~D~~Glp~q~~vEk~l~~~~~~~~~~~g~e~f~~~~~ 257 (1022)
|++==+|.|||.||||||++.++...++|-+ .|.=++.+==+|- .|.
T Consensus 10 v~tRFAPsPtG~LHiG~artAl~N~~~Ar~~--~G~fiLRiEDTD~-------------------~R~------------ 56 (472)
T COG0008 10 VRTRFAPSPTGYLHIGHARTALLNYLYARKY--GGKFILRIEDTDP-------------------ERE------------ 56 (472)
T ss_pred eEEEECcCCCCccchHHHHHHHHHHHHHHHh--CCEEEEEecCCCC-------------------CCC------------
Confidence 6677789999999999999999999999864 5666666544442 111
Q ss_pred HHHHHHHHHHHHHHHHhccccccCC-ccccCChhhHHHHHHHHHHHHHcCcEEEcc
Q 001708 258 KWKDEYGGTILRQQRRLGASLDWSR-ECFTMDEKRSKAVTEAFVRLYKEGLIYRDL 312 (1022)
Q Consensus 258 ~~~~~~~~~i~~ql~rlG~s~DW~r-~~~T~d~~~~~~v~~~F~~L~ekGlIyr~~ 312 (1022)
..++.+.|.++|+-|| ++|+. .|+.+ ++-..-.+.-.+|.++|+.|...
T Consensus 57 --~~e~~~~I~~~L~WLG--l~wde~~~~QS--~r~~~Y~~~~~~Li~~G~AY~c~ 106 (472)
T COG0008 57 --TPEAEDAILEDLEWLG--LDWDEGPYYQS--ERFDIYYEYAEKLIEKGKAYVCY 106 (472)
T ss_pred --CHHHHHHHHHHHHhcC--CCCCCceeehh--hhHHHHHHHHHHHHHCCCeEEec
Confidence 2345688999999999 56667 35544 34455567778999999999764
No 97
>PRK12558 glutamyl-tRNA synthetase; Provisional
Probab=97.12 E-value=0.0017 Score=76.61 Aligned_cols=94 Identities=30% Similarity=0.339 Sum_probs=68.1
Q ss_pred ECCCCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeeeeeccCCccChhHHHHHHHHHHHHhCCCccccChHHHHHHHHHH
Q 001708 180 VLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWKW 259 (1022)
Q Consensus 180 ~~pPPy~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG~D~~Glp~q~~vEk~l~~~~~~~~~~~g~e~f~~~~~~~ 259 (1022)
+==+|.|||.||||||++.+..-.++|-+ .|.=++.+==+|. + + -
T Consensus 5 ~RFAPSPTG~lHiG~artAL~n~l~Ar~~--gG~fiLRIEDTD~---------~----------R--------------s 49 (445)
T PRK12558 5 TRFAPSPTGYLHVGNARTALLNWLYARKH--GGKFILRIDDTDL---------E----------R--------------S 49 (445)
T ss_pred EEeCCCCCCcccHHHHHHHHHHHHHHHHh--CCEEEEEeccCCc---------c----------c--------------c
Confidence 33479999999999999999988888753 5666666555552 0 0 1
Q ss_pred HHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHHHcCcEEEcc
Q 001708 260 KDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDL 312 (1022)
Q Consensus 260 ~~~~~~~i~~ql~rlG~s~DW~r~~~T~d~~~~~~v~~~F~~L~ekGlIyr~~ 312 (1022)
..++.+.|.++|+.||+.+| ..|+- .++...+.++..+|.++|++|+..
T Consensus 50 ~~~~~~~I~e~L~wLGI~~D--e~y~Q--Ser~~~y~~~~e~L~e~G~AY~C~ 98 (445)
T PRK12558 50 KQEYADAIAEDLKWLGINWD--RTFRQ--SDRFDRYDEAAEKLKAAGRLYPCY 98 (445)
T ss_pred hHHHHHHHHHHHHHcCCCCC--ccccH--HHHHHHHHHHHHHHHHCCCEEEec
Confidence 24556789999999998766 43332 233357889999999999998764
No 98
>PRK12410 glutamylglutaminyl-tRNA synthetase; Provisional
Probab=97.07 E-value=0.0016 Score=76.43 Aligned_cols=91 Identities=16% Similarity=0.268 Sum_probs=68.0
Q ss_pred CCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeeeeeccCCccChhHHHHHHHHHHHHhCCCccccChHHHHHHHHHHHHH
Q 001708 183 PPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWKWKDE 262 (1022)
Q Consensus 183 PPy~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG~D~~Glp~q~~vEk~l~~~~~~~~~~~g~e~f~~~~~~~~~~ 262 (1022)
.|.|||.||||||++.++.-.++|- ..|.=+|.+==+|. +|. ..+
T Consensus 5 APSPTG~LHiG~artAL~n~l~Ar~--~gG~fiLRiEDTD~-------------------~R~--------------~~e 49 (433)
T PRK12410 5 APSPTGDMHIGNLRAAIFNYIVAKQ--QNEDFLIRIEDTDK-------------------ERN--------------IEG 49 (433)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHH--cCCEEEEEeCcCCC-------------------CcC--------------ChH
Confidence 6999999999999999999998875 45776666655553 111 245
Q ss_pred HHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHHHcCcEEEcc
Q 001708 263 YGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDL 312 (1022)
Q Consensus 263 ~~~~i~~ql~rlG~s~DW~r~~~T~d~~~~~~v~~~F~~L~ekGlIyr~~ 312 (1022)
+.+.|.+.|+.||+ ||+..|+..+ +...-.++..+|.++|..|...
T Consensus 50 ~~~~I~~~L~WlGl--~wDe~y~QSe--R~~~Y~~~a~~Li~~G~AY~C~ 95 (433)
T PRK12410 50 KDKEILEILNLFGI--SWDKLVYQSE--NLKFHRQMAEKLLSEKKAFACF 95 (433)
T ss_pred HHHHHHHHHHHcCC--CCCCCeehhc--cHHHHHHHHHHHHHcCCeeeec
Confidence 56789999999996 5557777654 2345567888999999999764
No 99
>PRK14703 glutaminyl-tRNA synthetase/YqeY domain fusion protein; Provisional
Probab=97.03 E-value=0.0014 Score=81.73 Aligned_cols=97 Identities=27% Similarity=0.289 Sum_probs=69.5
Q ss_pred EEECCCCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeeeeeccCCccChhHHHHHHHHHHHHhCCCccccChHHHHHHHH
Q 001708 178 VIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVW 257 (1022)
Q Consensus 178 ~i~~pPPy~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG~D~~Glp~q~~vEk~l~~~~~~~~~~~g~e~f~~~~~ 257 (1022)
+++==||.|||.||||||++.++...++|-+ .|.-.|..==+|- .+.
T Consensus 32 v~tRFaPsPtG~lHiGhar~alln~~~A~~~--~G~~~LR~eDTd~-------------------~r~------------ 78 (771)
T PRK14703 32 VVTRFPPEPNGYLHIGHAKSILLNFGIARDY--GGRCHLRMDDTNP-------------------ETE------------ 78 (771)
T ss_pred eEEEeCcCCCCcccHHHHHHHHHHHHHHHHh--CCEEEEEeCCCCC-------------------CcC------------
Confidence 6677799999999999999999999999743 4655444333332 111
Q ss_pred HHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHHHcCcEEEcc
Q 001708 258 KWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDL 312 (1022)
Q Consensus 258 ~~~~~~~~~i~~ql~rlG~s~DW~r~~~T~d~~~~~~v~~~F~~L~ekGlIyr~~ 312 (1022)
..+|.+.|.++|+-||+..|. ..|++. +|...-.+...+|.++|+.|...
T Consensus 79 --~~e~~~~I~~dl~wLG~~wd~-~~~~qS--~~~~~y~~~a~~Li~~G~aY~c~ 128 (771)
T PRK14703 79 --DTEYVEAIKDDVRWLGFDWGE-HLYYAS--DYFERMYAYAEQLIKMGLAYVDS 128 (771)
T ss_pred --ChHHHHHHHHHHHHcCCCCCC-CceEee--cCHHHHHHHHHHHHHcCCcccCc
Confidence 245678999999999965442 235554 45566677888999999999754
No 100
>TIGR00464 gltX_bact glutamyl-tRNA synthetase, bacterial family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the bacterial and mitochondrial forms of the enzyme. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu). This model is highly specific. Proteins with positive scores below the trusted cutoff may be fragments rather than full-length sequences.
Probab=97.02 E-value=0.0021 Score=76.88 Aligned_cols=93 Identities=28% Similarity=0.349 Sum_probs=66.5
Q ss_pred CCCCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeeeeeccCCccChhHHHHHHHHHHHHhCCCccccChHHHHHHHHHHH
Q 001708 181 LPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWKWK 260 (1022)
Q Consensus 181 ~pPPy~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG~D~~Glp~q~~vEk~l~~~~~~~~~~~g~e~f~~~~~~~~ 260 (1022)
==+|-|||.||||||++.++.-.++|- ..|.=++.+==+|. .| -.
T Consensus 5 RfAPsPtG~lHiG~~rtal~n~l~Ar~--~~G~~iLRieDtD~-------------------~R--------------~~ 49 (470)
T TIGR00464 5 RFAPSPTGYLHIGGARTALFNYLFAKH--TGGEFILRIEDTDL-------------------ER--------------NI 49 (470)
T ss_pred eeCCCCCCcccHHHHHHHHHHHHHHHH--cCCEEEEEeCcCCC-------------------cc--------------CC
Confidence 347999999999999999999999983 35655555444443 11 12
Q ss_pred HHHHHHHHHHHHHhccccccC-CccccCChhhHHHHHHHHHHHHHcCcEEEcc
Q 001708 261 DEYGGTILRQQRRLGASLDWS-RECFTMDEKRSKAVTEAFVRLYKEGLIYRDL 312 (1022)
Q Consensus 261 ~~~~~~i~~ql~rlG~s~DW~-r~~~T~d~~~~~~v~~~F~~L~ekGlIyr~~ 312 (1022)
.++.+.|.+.|+.||+ +|+ .+|+..+ +...-.++..+|.++|++|+..
T Consensus 50 ~~~~~~i~~~L~wlGl--~~de~~~~QS~--r~~~y~~~~~~L~~~g~aY~C~ 98 (470)
T TIGR00464 50 EEAEEAILEGLKWLGI--SWDEGPYYQSQ--RLDIYKKYAKELLEEGLAYRCY 98 (470)
T ss_pred hHHHHHHHHHHHHCCC--CCCCCeeehhC--CHHHHHHHHHHHHHcCCEEecC
Confidence 3456789999999996 565 5566554 2234466778999999999764
No 101
>cd00418 GlxRS_core catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase. Glutamyl-tRNA synthetase(GluRS)/Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Glu or Gln, respectively, to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea, cellular organelles, and some bacteria lack GlnRS. In these cases, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. The discriminating form of GluRS differs from GlnRS and the non-discriminating form of GluRS in their C-terminal anti-codon bind
Probab=96.92 E-value=0.0032 Score=68.16 Aligned_cols=86 Identities=31% Similarity=0.395 Sum_probs=62.6
Q ss_pred CCCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeeeeeccCCccChhHHHHHHHHHHHHhCCCccccChHHHHHHHHHHHH
Q 001708 182 PPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWKWKD 261 (1022)
Q Consensus 182 pPPy~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG~D~~Glp~q~~vEk~l~~~~~~~~~~~g~e~f~~~~~~~~~ 261 (1022)
=+|.|||.||+||+++.++.-.++|-+ .|.=++.+==+|. .|. ..
T Consensus 6 FAPsPtG~lHlG~~r~al~n~l~Ar~~--~G~~iLRieDtD~-------------------~R~--------------~~ 50 (230)
T cd00418 6 FAPSPTGYLHIGHARTALFNFAFARKY--GGKFILRIEDTDP-------------------ERS--------------RP 50 (230)
T ss_pred eCCCCCCcccHHHHHHHHHHHHHHHHc--CCeEEEEeCcCCC-------------------CCC--------------Ch
Confidence 479999999999999999999998864 5666655544443 111 24
Q ss_pred HHHHHHHHHHHHhccccccCC-ccccCChhhHHHHHHHHHHHHHcC
Q 001708 262 EYGGTILRQQRRLGASLDWSR-ECFTMDEKRSKAVTEAFVRLYKEG 306 (1022)
Q Consensus 262 ~~~~~i~~ql~rlG~s~DW~r-~~~T~d~~~~~~v~~~F~~L~ekG 306 (1022)
++.+.|.++|+.||+ +|+. .|+.. ++...-.++..+|.++|
T Consensus 51 ~~~~~I~~dL~wlGl--~wd~~~~~QS--~r~~~y~~~~~~L~~~g 92 (230)
T cd00418 51 EYVESILEDLKWLGL--DWDEGPYRQS--DRFDLYRAYAEELIKKG 92 (230)
T ss_pred HHHHHHHHHHHHcCC--CCCCCeeehh--cCHHHHHHHHHHHHHcC
Confidence 566889999999996 5556 55543 34455667888999999
No 102
>cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase. Discriminating Glutamyl-tRNA synthetase (GluRS) catalytic core domain . The discriminating form of GluRS is only found in bacteria and cellular organelles. GluRS is a monomer that attaches Glu to the appropriate tRNA. Like other class I tRNA synthetases, GluRS aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=96.88 E-value=0.0036 Score=68.19 Aligned_cols=87 Identities=28% Similarity=0.334 Sum_probs=60.1
Q ss_pred CCCCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeeeeeccCCccChhHHHHHHHHHHHHhCCCccccChHHHHHHHHHHH
Q 001708 181 LPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWKWK 260 (1022)
Q Consensus 181 ~pPPy~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG~D~~Glp~q~~vEk~l~~~~~~~~~~~g~e~f~~~~~~~~ 260 (1022)
==+|.|||.|||||+++.++.-.++|= ..|.=.+.+==+|. .+. .
T Consensus 5 RfAPsPtG~LHlG~~~~al~n~l~ar~--~~G~~ilRieDtd~-------------------~r~--------------~ 49 (239)
T cd00808 5 RFAPSPTGFLHIGGARTALFNYLFARK--HGGKFILRIEDTDQ-------------------ERS--------------V 49 (239)
T ss_pred EeCCCCCCcccHHHHHHHHHHHHHHHH--cCCeEEEEECcCCC-------------------CCC--------------c
Confidence 347999999999999999999998884 35543333333332 111 2
Q ss_pred HHHHHHHHHHHHHhccccccCC---------ccccCChhhHHHHHHHHHHHHHcC
Q 001708 261 DEYGGTILRQQRRLGASLDWSR---------ECFTMDEKRSKAVTEAFVRLYKEG 306 (1022)
Q Consensus 261 ~~~~~~i~~ql~rlG~s~DW~r---------~~~T~d~~~~~~v~~~F~~L~ekG 306 (1022)
.++.+.|.++|..||+ ||+. .|+..+ +.....++..+|.++|
T Consensus 50 ~~~~~~i~~dL~wlGl--~~d~~~~~~g~~~~~~QS~--r~~~y~~~~~~L~~~g 100 (239)
T cd00808 50 PEAEEAILEALKWLGL--DWDEGPDVGGPYGPYRQSE--RLEIYRKYAEKLLEKG 100 (239)
T ss_pred hHHHHHHHHHHHHcCC--CCCcCCccCCCCCCEeeeC--CHHHHHHHHHHHHHcC
Confidence 3455788999999995 6666 566554 4455666788888888
No 103
>PLN02627 glutamyl-tRNA synthetase
Probab=96.71 E-value=0.0054 Score=73.57 Aligned_cols=96 Identities=27% Similarity=0.382 Sum_probs=69.5
Q ss_pred EEECCCCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeeeeeccCCccChhHHHHHHHHHHHHhCCCccccChHHHHHHHH
Q 001708 178 VIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVW 257 (1022)
Q Consensus 178 ~i~~pPPy~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG~D~~Glp~q~~vEk~l~~~~~~~~~~~g~e~f~~~~~ 257 (1022)
+.+==+|.|||.||||||++.++.-.++| +..|.=++.+==+|. +|.
T Consensus 46 vr~RFAPSPTG~LHiG~aRtAL~n~l~Ar--~~gG~fiLRIEDTD~-------------------~R~------------ 92 (535)
T PLN02627 46 VRVRFAPSPTGNLHVGGARTALFNYLFAR--SKGGKFVLRIEDTDL-------------------ARS------------ 92 (535)
T ss_pred eEEEeCCCCCCCccHHHHHHHHHHHHHHH--HhCCEEEEEeCcCCC-------------------CCC------------
Confidence 45555789999999999999999999998 456776666655553 111
Q ss_pred HHHHHHHHHHHHHHHHhccccccCCc---------cccCChhhHHHHHHHHHHHHHcCcEEEcc
Q 001708 258 KWKDEYGGTILRQQRRLGASLDWSRE---------CFTMDEKRSKAVTEAFVRLYKEGLIYRDL 312 (1022)
Q Consensus 258 ~~~~~~~~~i~~ql~rlG~s~DW~r~---------~~T~d~~~~~~v~~~F~~L~ekGlIyr~~ 312 (1022)
..++.+.|.+.|+.||+ ||+.. |+-.+ +...-.++..+|.++|..|+..
T Consensus 93 --~~e~~~~I~~~L~WLGl--~wDegp~~gg~~gpy~QSe--R~~~Y~~~a~~Li~~G~AY~Cf 150 (535)
T PLN02627 93 --TKESEEAVLRDLKWLGL--DWDEGPDVGGEYGPYRQSE--RNAIYKQYAEKLLESGHVYPCF 150 (535)
T ss_pred --ChHHHHHHHHHHHHcCC--CCCcCcccCCCCCCeeeec--cHHHHHHHHHHHHHcCCeeecc
Confidence 24556889999999995 66542 44433 2345567788999999999764
No 104
>PRK01406 gltX glutamyl-tRNA synthetase; Reviewed
Probab=96.63 E-value=0.0063 Score=72.93 Aligned_cols=95 Identities=28% Similarity=0.331 Sum_probs=68.5
Q ss_pred EECCCCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeeeeeccCCccChhHHHHHHHHHHHHhCCCccccChHHHHHHHHH
Q 001708 179 IVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWK 258 (1022)
Q Consensus 179 i~~pPPy~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG~D~~Glp~q~~vEk~l~~~~~~~~~~~g~e~f~~~~~~ 258 (1022)
.+==+|-|||.||||||++.++.-.++|-+ .|.=+|.+==+|. +|.
T Consensus 6 ~~RfAPSPtG~lHiG~~rtal~n~l~Ar~~--~G~fiLRieDtD~-------------------~R~------------- 51 (476)
T PRK01406 6 RTRFAPSPTGYLHIGGARTALFNWLFARHH--GGKFILRIEDTDQ-------------------ERS------------- 51 (476)
T ss_pred eEEeCCCCCCcccHHHHHHHHHHHHHHHHc--CCEEEEEeCcCCC-------------------CCC-------------
Confidence 444579999999999999999999988753 5666665544443 111
Q ss_pred HHHHHHHHHHHHHHHhccccccCCc--------cccCChhhHHHHHHHHHHHHHcCcEEEcc
Q 001708 259 WKDEYGGTILRQQRRLGASLDWSRE--------CFTMDEKRSKAVTEAFVRLYKEGLIYRDL 312 (1022)
Q Consensus 259 ~~~~~~~~i~~ql~rlG~s~DW~r~--------~~T~d~~~~~~v~~~F~~L~ekGlIyr~~ 312 (1022)
...+.+.|.+.|+.||+ +|+.. |+.++ +...-.+...+|.++|+.|+..
T Consensus 52 -~~~~~~~i~~~L~wlGl--~~De~p~~~~~gpy~QS~--r~~~y~~~~~~L~~~g~aY~C~ 108 (476)
T PRK01406 52 -TEEAEEAILEGLKWLGL--DWDEGPDGGPYGPYRQSE--RLDIYKEYAEQLLEEGKAYYCY 108 (476)
T ss_pred -ChHHHHHHHHHHHHCCC--CCCCCCccCCCCceehhc--CHHHHHHHHHHHHHcCCeeecC
Confidence 34556889999999996 55543 55443 3345677788999999999764
No 105
>cd07956 Anticodon_Ia_Arg Anticodon-binding domain of arginyl tRNA synthetases. This domain is found in arginyl tRNA synthetases (ArgRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. ArgRS catalyzes the transfer of arginine to the 3'-end of its tRNA.
Probab=95.74 E-value=0.25 Score=50.34 Aligned_cols=139 Identities=18% Similarity=0.206 Sum_probs=81.4
Q ss_pred CCCchHHHHHHHhccCCCcccccchhhhHHHH--------HHHHHHHHHHHHHHhhcCCCCCCCCCCCCCC-CChhhHHH
Q 001708 756 ECGTDALRFALVSYTAQSDKINLDIQRVVGYR--------QWCNKLWNAVRFSMSKLGEGFVPPLKLHPHN-LPFSCKWI 826 (1022)
Q Consensus 756 ~~GaDaLR~~L~~~~~~~~Dinf~~~~~~~~r--------~f~nkl~N~~rf~l~~l~~~~~p~~~~~~~~-~~~~D~wi 826 (1022)
+.|.|++||.+++.+.. .++.||++.+.... .-..++.|.++- ......+....+... ....++-+
T Consensus 2 ~i~~~a~~~~~l~~~~~-~~~~fd~~~~~~~~~~~~~yi~ya~aRi~nIl~k----~~~~~~~~~~~~~~ll~~~~E~~L 76 (156)
T cd07956 2 EVGVGAVKYQDLSNKRI-KDYTFDWERMLSFEGDTGPYLQYAHARLCSILRK----AGETIEAEADADLSLLPEPDERDL 76 (156)
T ss_pred ccchhHHHHHHHhcCCC-CCceecHHHHHhhcCCCchhHHHHHHHHHHHHHh----CCCcCccccccchhhcCCHHHHHH
Confidence 57899999999986554 58999998753211 111223333221 110000001111111 13456677
Q ss_pred HHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHhhhhHHHHHhhcccccCCCcccHHHHHHHHHHHHHHHHHHHHHHh
Q 001708 827 LSVLNKAISRTASSLNSYEFSDAASTVYSWWQYQFCDVFIEAIKPYFAGDNPAFASERSAAQHVLWVCLETGLRLLH 903 (1022)
Q Consensus 827 l~~L~~~~~~v~~a~e~~~f~~a~~~i~~f~~~~l~~~Yle~~K~~l~~~~~~~~~~r~~a~~~L~~~L~~~l~LL~ 903 (1022)
+..+..+.+.+..++.+.+++.++..++++. ..+.++ ++.+ +.+ +++.+....|......+..++..++.||.
T Consensus 77 ~~~l~~~~~~i~~~~~~~~~~~l~~~l~~L~-~~~~~f-fd~v-~V~-~~~~~i~~nRL~Ll~~v~~vl~~~l~llg 149 (156)
T cd07956 77 ILLLAKFPEVVKNAAETLEPHTIATYLFDLA-HAFSKF-YNAC-PVL-GAEEELRNARLALVAAARQVLANGLDLLG 149 (156)
T ss_pred HHHHHHhHHHHHHHHHHcCcHHHHHHHHHHH-HHHHHH-HhcC-ccc-CCCHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 8888888888899999999999999999984 444444 4544 223 23333222455555566666777777763
No 106
>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=95.31 E-value=0.019 Score=63.87 Aligned_cols=58 Identities=28% Similarity=0.231 Sum_probs=39.5
Q ss_pred cCcccccccccchH-HHHHHHHHhhhcCCCCceEEEeccceeCCCCccceecCCcccCcchhhc
Q 001708 656 TSVLETGHDILFFW-VARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVIN 718 (1022)
Q Consensus 656 ~dl~~~G~Dil~fW-~a~m~~~~~~l~~~~Pfk~V~~Hg~v~D~~GrKMSKSlGNvIdP~dvI~ 718 (1022)
.++...|.||.... .+|-++-. +....| -.+.|.++.+.+|+|||||.||.++ ..+.+
T Consensus 152 ~~l~~~G~DQ~~~i~~~rd~a~r--~~~~~~--~~l~~~ll~~l~G~KMSKS~~~~~~-i~l~d 210 (269)
T cd00805 152 VDLQLGGSDQRGNITLGRDLIRK--LGYKKV--VGLTTPLLTGLDGGKMSKSEGNAIW-DPVLD 210 (269)
T ss_pred CCeeEecHHHHHHHHHHHHHHHH--hCCCCc--EEEeeccccCCCCCcccCCCCCccc-ccCCC
Confidence 47888899996432 22333322 223334 3578999999999999999999997 55544
No 107
>cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. These enzymes attach Tyr or Trp, respectively, to the appropriate tRNA. These class I enzymes are homodimers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=95.18 E-value=0.032 Score=62.28 Aligned_cols=61 Identities=15% Similarity=0.058 Sum_probs=40.2
Q ss_pred CCcCcccccccccch-HHHHHHHHHhhhcC-CCCceEEEeccceeCCCCccceecCCcccCcchhhc
Q 001708 654 YPTSVLETGHDILFF-WVARMVMLGIKLGG-EVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVIN 718 (1022)
Q Consensus 654 ~P~dl~~~G~Dil~f-W~a~m~~~~~~l~~-~~Pfk~V~~Hg~v~D~~GrKMSKSlGNvIdP~dvI~ 718 (1022)
+.+++...|.||... =.+|-++-- +.+ ..| ..+++.++.+.+|.|||||.||.|+...+.+
T Consensus 152 ~~~~~vp~G~DQ~~~i~l~rdla~r--~n~~~~p--~~l~~p~l~~l~G~KMSKS~~~~i~l~~~~d 214 (273)
T cd00395 152 EGCDIQPGGSDQWGNITLGRELARR--FNGFTIA--EGLTIPLVTKLDGPKFGKSESGPKWLDTEKT 214 (273)
T ss_pred cCCcEEEecHHHHHHHHHHHHHHHH--hCCCCCC--eEEeeccccCCCCCcCCCCCCCCccccccCC
Confidence 445788889999532 222333322 222 234 3556699999999999999999987655544
No 108
>PRK13354 tyrosyl-tRNA synthetase; Provisional
Probab=95.00 E-value=0.02 Score=67.47 Aligned_cols=59 Identities=27% Similarity=0.174 Sum_probs=41.1
Q ss_pred CCcCcccccccccchHHH-HHHHHHhhhcCCCCceEEEeccceeCCCCccceecCCcccCcchh
Q 001708 654 YPTSVLETGHDILFFWVA-RMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEV 716 (1022)
Q Consensus 654 ~P~dl~~~G~Dil~fW~a-~m~~~~~~l~~~~Pfk~V~~Hg~v~D~~GrKMSKSlGNvIdP~dv 716 (1022)
|.+++...|.||...... |-++ -.+.+..| -.+++.++...+|.|||||.||.|+..|=
T Consensus 185 ~~~~iq~gG~DQ~~ni~~grdl~--~r~~~~~~--~~lt~PlL~g~dG~KMsKS~~naI~L~d~ 244 (410)
T PRK13354 185 EDVDLQIGGTDQWGNILMGRDLQ--RKLEGEEQ--FGLTMPLLEGADGTKMGKSAGGAIWLDPE 244 (410)
T ss_pred CCCCEEEecHHHHHHHHHHHHHH--HHhCCCCc--eEeccCCccCCCCCccCCCCCCceeccCC
Confidence 477888899999543211 2222 23334445 46678899999999999999999987664
No 109
>KOG1147 consensus Glutamyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=94.69 E-value=0.086 Score=62.01 Aligned_cols=98 Identities=29% Similarity=0.402 Sum_probs=69.5
Q ss_pred EEECCCCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeeeeeccCCccChhHHHHHHHHHHHHhCCCccccChHHHHHHHH
Q 001708 178 VIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVW 257 (1022)
Q Consensus 178 ~i~~pPPy~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG~D~~Glp~q~~vEk~l~~~~~~~~~~~g~e~f~~~~~ 257 (1022)
|++-=||-|+|.||||||-...|- -|.... |+=-.+.-||..--+ |
T Consensus 201 Vv~RFPPEpSGyLHIGHAKAALLN----qYfa~~-~~G~LIvRFDDTNPa------K----------------------- 246 (712)
T KOG1147|consen 201 VVTRFPPEPSGYLHIGHAKAALLN----QYFAQA-YQGKLIVRFDDTNPA------K----------------------- 246 (712)
T ss_pred eEEecCCCCCceeehhhHHHHHHH----HHHHHh-cCceEEEEecCCCcc------h-----------------------
Confidence 556668999999999999876653 232221 222345556664321 1
Q ss_pred HHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHHHcCcEEEccee
Q 001708 258 KWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDLRL 314 (1022)
Q Consensus 258 ~~~~~~~~~i~~ql~rlG~s~DW~r~~~T~d~~~~~~v~~~F~~L~ekGlIyr~~~~ 314 (1022)
=.+++.+.|.+++..|||-.| .+|...+|-..+...=++|..+|-.|-+..|
T Consensus 247 -E~~eFe~~IleDl~~LgIkpd----~~TyTSDyF~~i~dycv~likeGKAYvDDTp 298 (712)
T KOG1147|consen 247 -ENEEFEDVILEDLSLLGIKPD----RVTYTSDYFDEIMDYCVKLIKEGKAYVDDTP 298 (712)
T ss_pred -hhHHHHHHHHHHHHHhCcCcc----eeeechhhHHHHHHHHHHHHhcCcccccCCc
Confidence 135567899999999999998 3566667778888888999999999987755
No 110
>PRK05912 tyrosyl-tRNA synthetase; Validated
Probab=94.29 E-value=0.036 Score=65.35 Aligned_cols=58 Identities=28% Similarity=0.332 Sum_probs=41.3
Q ss_pred CCcCcccccccccchHH-HHHHHHHhhhcCCCCceEEEeccceeCCCCccceecCCcccCcch
Q 001708 654 YPTSVLETGHDILFFWV-ARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLE 715 (1022)
Q Consensus 654 ~P~dl~~~G~Dil~fW~-a~m~~~~~~l~~~~Pfk~V~~Hg~v~D~~GrKMSKSlGNvIdP~d 715 (1022)
|.+++...|.||..... +|-++- .+..+.+| .++..++.+.+|+|||||.||.|+..|
T Consensus 187 ~~~~i~~gG~DQ~~ni~~grdla~--r~~~~~~~--~l~~plL~~~~G~KMsKS~~naI~L~d 245 (408)
T PRK05912 187 YGCDLQLGGSDQWGNILSGRDLQR--RYGGKPQF--GLTMPLLTGLDGKKMGKSEGNAVWLDE 245 (408)
T ss_pred CCCCEEeccHHHHHHHHHHHHHHH--HhCCCCeE--EEecCCcCCCCCCcccCCCCCceeCCC
Confidence 57889999999965322 233332 23333344 357888889999999999999998876
No 111
>KOG4426 consensus Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=93.49 E-value=0.84 Score=52.73 Aligned_cols=162 Identities=17% Similarity=0.240 Sum_probs=93.1
Q ss_pred EEeccceeCCCCccceecCCcccCcchhhcccc---chhHHHhhhcCCCChHHHHHHHhcccCCCCCCCCCCCchHHHHH
Q 001708 689 VYLHPMIRDAHGRKMSKSLGNVIDPLEVINGIS---LEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFA 765 (1022)
Q Consensus 689 V~~Hg~v~D~~GrKMSKSlGNvIdP~dvI~g~~---l~~l~~~l~~~nl~~~e~~~a~~~~~~~~~~~i~~~GaDaLR~~ 765 (1022)
..--|+|+..+|+|+-...|.+|-..|+++... .+.|..+=++-.+.|.|+..|...- .|| ++.|+
T Consensus 434 HvgFGlVLGeD~KkFkTRsgetVrL~DLLdEg~kRs~~~Liergrdk~~tpeeL~~a~eav---------ayG--ciKYa 502 (656)
T KOG4426|consen 434 HVGFGLVLGEDKKKFKTRSGETVRLLDLLDEGKKRSKEKLIERGRDKVLTPEELDAAQEAV---------AYG--CIKYA 502 (656)
T ss_pred eeeeeeEEccCcccccccccceeeHHHHHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHH---------Hhc--chhHh
Confidence 344588999999999999999999999987322 2333333344568999997765442 344 35665
Q ss_pred HHhccCCCcccccchhhhH------------HHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCChhhHHHHH-HHHH
Q 001708 766 LVSYTAQSDKINLDIQRVV------------GYRQWCNKLWNAVRFSMSKLGEGFVPPLKLHPHNLPFSCKWILS-VLNK 832 (1022)
Q Consensus 766 L~~~~~~~~Dinf~~~~~~------------~~r~f~nkl~N~~rf~l~~l~~~~~p~~~~~~~~~~~~D~wil~-~L~~ 832 (1022)
=++.+. -.|--|+.+.+- .+.+.|.-+++.-.-.. ++.+.......+ .+...+.|-|. .|-+
T Consensus 503 DL~hnR-~~dY~FSFDkML~DrGnTAvYLLYa~tRIcSI~rksg~d~~-~l~~~lkkT~ki---~LDH~~E~kLg~~lLk 577 (656)
T KOG4426|consen 503 DLSHNR-ITDYIFSFDKMLEDRGNTAVYLLYAYTRICSIARKSGKDNV-DLIKELKKTGKI---ALDHEKEWKLGKHLLK 577 (656)
T ss_pred hhcccc-ccceeeeHHHHhhccCcceehhHHHHHHHHHHHHHcCCchh-hHHHHHHhcCcc---ccCCHHHHHHHHHHHh
Confidence 443332 246677766542 23334433332211000 000000000011 23334455543 4666
Q ss_pred HHHHHHhhhhcCCHHHHHHHHHHHHHhhhhHHHHH
Q 001708 833 AISRTASSLNSYEFSDAASTVYSWWQYQFCDVFIE 867 (1022)
Q Consensus 833 ~~~~v~~a~e~~~f~~a~~~i~~f~~~~l~~~Yle 867 (1022)
+.+.+..++++.-.+..+..+|++. ..|..+|-+
T Consensus 578 f~e~v~~~~~~L~lh~lC~y~y~l~-t~Ft~FY~~ 611 (656)
T KOG4426|consen 578 FAEIVEKALDSLFLHVLCDYLYELA-TLFTEFYDS 611 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhc
Confidence 7777788888888888888888875 667777744
No 112
>cd00802 class_I_aaRS_core catalytic core domain of class I amino acyl-tRNA synthetase. Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=93.22 E-value=0.084 Score=52.82 Aligned_cols=50 Identities=28% Similarity=0.173 Sum_probs=34.7
Q ss_pred cCcccccccccchHHHHHHHHHhhhcCCCCceEEEeccceeCCCCccceecC
Q 001708 656 TSVLETGHDILFFWVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSL 707 (1022)
Q Consensus 656 ~dl~~~G~Dil~fW~a~m~~~~~~l~~~~Pfk~V~~Hg~v~D~~GrKMSKSl 707 (1022)
.++++.|.||.. ++.....+.-++.+..+ ...+.+|++...+|+|||||+
T Consensus 94 ~~i~~~G~Dq~~-h~~~~~~i~~~~~~~~~-p~~~~~~~l~~~~g~KmSks~ 143 (143)
T cd00802 94 CDIHLGGSDQLG-HIELGLELLKKAGGPAR-PFGLTFGRVMGADGTKMSKSK 143 (143)
T ss_pred cEEEEechhHHH-HHHHHHHHHHHhCCCCC-ceEEEeCCeECCCCCcCCCCC
Confidence 478889999976 44444444444434322 356778999988899999995
No 113
>PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2JAN_A 3P0J_B 3P0I_B 3P0H_B 1YID_C 2A4M_C 1YIA_C 1YI8_C 2EL7_A 3PRH_A ....
Probab=92.73 E-value=0.1 Score=58.67 Aligned_cols=62 Identities=23% Similarity=0.142 Sum_probs=39.4
Q ss_pred CcCcccccccccch-HHHHHHHHHhhhcCCCCceEEEeccceeCCCCc-cceecCCc-ccCcchh
Q 001708 655 PTSVLETGHDILFF-WVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGR-KMSKSLGN-VIDPLEV 716 (1022)
Q Consensus 655 P~dl~~~G~Dil~f-W~a~m~~~~~~l~~~~Pfk~V~~Hg~v~D~~Gr-KMSKSlGN-vIdP~dv 716 (1022)
-+++...|.||... =.+|-++-.+......|-...+++.++...+|. |||||.+| .|+..|-
T Consensus 149 ~~~~~~~G~DQ~~~~~l~rd~a~k~~~~~~~~~p~~l~~~~l~~l~G~~KMSKS~~ns~I~L~d~ 213 (292)
T PF00579_consen 149 KADLVPGGIDQRGHIELARDLARKFNYKEIFPKPAGLTSPLLPGLDGQKKMSKSDPNSAIFLDDS 213 (292)
T ss_dssp THSEEEEEGGGHHHHHHHHHHHHHHTHHSTSSS-EEEEETCBBSTTSSSBTTTTTTGGS-BTTTT
T ss_pred ccccccccchHHHHHHHHHHHHhhhcccccccCchheeeccccccCCccccCccCCccEEEEecc
Confidence 34678889999653 333444433322222233467788899999999 99999999 7765543
No 114
>KOG1195 consensus Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=92.69 E-value=1.7 Score=51.43 Aligned_cols=155 Identities=17% Similarity=0.264 Sum_probs=98.7
Q ss_pred hHHHHHHHHHHHcCCcccCCCCCCCcEEEECCCCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeeeee------------
Q 001708 151 SVEKSWYSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWV------------ 218 (1022)
Q Consensus 151 ~vE~~w~~~W~~~~~f~~~~~~~k~~f~i~~pPPy~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~------------ 218 (1022)
-++.-....|++...|....--..++-++-..-||.+-..|+||.++.+|.-.++.-++-.|+.|.-+
T Consensus 86 ~~k~~l~~i~~~~~~~g~~~~~~~k~iVVefSSPNIAK~FHvGhLRsTiiG~flanl~e~~G~~Vtr~NYLGDWGkQFgl 165 (567)
T KOG1195|consen 86 LIKSVLPIIEEQREKYGKNELGSGKKIVVEFSSPNIAKPFHVGHLRSTIIGNFLANLHEALGWEVTRVNYLGDWGKQFGL 165 (567)
T ss_pred HHHHHHHHHHHHhcccCccccccCceEEEEecCCCcccccccchhhhhhhhhHhhhhHHhhCCceeehhhhhHHHHHhhH
Confidence 45666677788877776653223467888889999999999999999999999999999999999763
Q ss_pred --ccCCccCh-------hHHHHHHHHHHHHhC----CCccccChHHHH-------HH--HHH-HHHHHHHHHHHHHHHhc
Q 001708 219 --PGMDHAGI-------ATQVVVEKKLMRERK----LTRHDIGREQFV-------SE--VWK-WKDEYGGTILRQQRRLG 275 (1022)
Q Consensus 219 --pG~D~~Gl-------p~q~~vEk~l~~~~~----~~~~~~g~e~f~-------~~--~~~-~~~~~~~~i~~ql~rlG 275 (1022)
-||--.|- ||+...+..+..... .+..+.-++-|. +. .|+ +.+.-+....+...|||
T Consensus 166 l~~g~~~~g~e~~L~~~pI~hL~dvYVk~nk~~~~~~~~~~~are~f~rlE~~d~e~~k~Wqrfr~lsIe~l~~~Y~Rl~ 245 (567)
T KOG1195|consen 166 LALGFQLYGDEEELQLNPIKHLFDVYVKINKDAEKDPDTAEEAREFFKRLEDGDEEHLKLWQRFRDLSIEKLIKTYNRLN 245 (567)
T ss_pred HhccHHhhCchhhhccchHHHHHHHHHHhhhhhhhCcchHHHHHHHHHHHhcccHHHHHHHHHhhhhhHHHHHHHHHHhc
Confidence 24444443 444333332211111 111112222221 11 222 44555666677889999
Q ss_pred cccccCCccccCChhhHHHHHHHHHHHHHcCcE
Q 001708 276 ASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLI 308 (1022)
Q Consensus 276 ~s~DW~r~~~T~d~~~~~~v~~~F~~L~ekGlI 308 (1022)
+-+| .|---+.-+.+..+.+...+...||+
T Consensus 246 v~FD---~y~gESqv~~e~~~~~~d~~rs~~l~ 275 (567)
T KOG1195|consen 246 VKFD---EYSGESQVSNEKMQEALDLLRSANLT 275 (567)
T ss_pred eeee---eccchHHHHHHHHHHHHHHHHhcCCc
Confidence 9999 22223345667777777777777754
No 115
>cd00418 GlxRS_core catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase. Glutamyl-tRNA synthetase(GluRS)/Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Glu or Gln, respectively, to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea, cellular organelles, and some bacteria lack GlnRS. In these cases, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. The discriminating form of GluRS differs from GlnRS and the non-discriminating form of GluRS in their C-terminal anti-codon bind
Probab=92.54 E-value=0.37 Score=52.41 Aligned_cols=22 Identities=32% Similarity=0.401 Sum_probs=19.5
Q ss_pred EEEeccceeCCCCccceecCCc
Q 001708 688 KVYLHPMIRDAHGRKMSKSLGN 709 (1022)
Q Consensus 688 ~V~~Hg~v~D~~GrKMSKSlGN 709 (1022)
...-+++++|.+|+|||||.|+
T Consensus 139 ~~~H~pll~~~~g~KLSKr~~~ 160 (230)
T cd00418 139 RFYHFPRLLLEDGTKLSKRKLN 160 (230)
T ss_pred eEEEeeeeeCCCCCCccCcCCC
Confidence 5667788999999999999998
No 116
>PRK12556 tryptophanyl-tRNA synthetase; Provisional
Probab=91.75 E-value=0.15 Score=58.52 Aligned_cols=59 Identities=31% Similarity=0.394 Sum_probs=38.2
Q ss_pred CCcCcccccccccc-hHHHHHHHHHhhh-cC---CCCceEEE--eccceeCCCCccceecCCcccCc
Q 001708 654 YPTSVLETGHDILF-FWVARMVMLGIKL-GG---EVPFTKVY--LHPMIRDAHGRKMSKSLGNVIDP 713 (1022)
Q Consensus 654 ~P~dl~~~G~Dil~-fW~a~m~~~~~~l-~~---~~Pfk~V~--~Hg~v~D~~GrKMSKSlGNvIdP 713 (1022)
|.+|+...|.||.. +=++|-++..+.. .| ..| ..++ .|.++...+|+|||||.+|.|..
T Consensus 148 ~~~d~VpvG~DQ~qhleLtRdiA~rfn~~yg~~f~~P-~~~~~~~~~~l~gLdg~KMSKS~~n~I~L 213 (332)
T PRK12556 148 FQATHVPVGKDQIQHIEIARDIATYFNHTFGDTFTLP-EYVIQEEGAILPGLDGRKMSKSYGNVIPL 213 (332)
T ss_pred ccCCEEEeccccHHHHHHHHHHHHHHHHhccccCCCc-eeccccccccccCCCCCCCCCCCCCcccc
Confidence 55677788999974 4455666543321 11 234 3333 46777788999999999998754
No 117
>PRK08560 tyrosyl-tRNA synthetase; Validated
Probab=91.41 E-value=0.2 Score=57.53 Aligned_cols=58 Identities=29% Similarity=0.323 Sum_probs=41.2
Q ss_pred CCcCcccccccccc-hHHHHHHHHHhhhcCCCCceEEEeccceeCCCCc--cceecC-CcccCcch
Q 001708 654 YPTSVLETGHDILF-FWVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGR--KMSKSL-GNVIDPLE 715 (1022)
Q Consensus 654 ~P~dl~~~G~Dil~-fW~a~m~~~~~~l~~~~Pfk~V~~Hg~v~D~~Gr--KMSKSl-GNvIdP~d 715 (1022)
|.+|+...|.||.. +=++|-++-. +....| .++.|.++.+.+|. |||||. ||.|...|
T Consensus 167 ~~ad~vpvG~DQ~~h~~l~Rdia~~--~n~~~p--~~l~~~~l~~L~g~~~KMSKS~p~~~I~L~D 228 (329)
T PRK08560 167 LDVDIAVGGMDQRKIHMLAREVLPK--LGYKKP--VCIHTPLLTGLDGGGIKMSKSKPGSAIFVHD 228 (329)
T ss_pred hCCCEEEechhHHHHHHHHHHhhHh--cCCCCc--eEEEcCccCCCCCCCCCCcCCCCCCeecccC
Confidence 56778888999964 3344444432 223345 45679999999998 999999 99997754
No 118
>PRK12284 tryptophanyl-tRNA synthetase; Reviewed
Probab=90.64 E-value=0.19 Score=59.07 Aligned_cols=60 Identities=27% Similarity=0.325 Sum_probs=38.3
Q ss_pred CCcCcccccccccc-hHHHHHHHHHhhh-cC----CCCceEEEe--ccceeCCCCccceecCCcccCcc
Q 001708 654 YPTSVLETGHDILF-FWVARMVMLGIKL-GG----EVPFTKVYL--HPMIRDAHGRKMSKSLGNVIDPL 714 (1022)
Q Consensus 654 ~P~dl~~~G~Dil~-fW~a~m~~~~~~l-~~----~~Pfk~V~~--Hg~v~D~~GrKMSKSlGNvIdP~ 714 (1022)
|-+++...|.||.. .=++|-++..... .| ..| ..++. +..|.+.+|+|||||.||.|...
T Consensus 147 y~ad~VPVG~DQ~qHlELaRdIA~rFN~~yg~~~F~~P-e~~i~~~~~~I~gLdg~KMSKS~~n~I~L~ 214 (431)
T PRK12284 147 FNAHKVPVGRDQIQHIEMARDIAQRFNHLYGGEFFVLP-EAVIEESVATLPGLDGRKMSKSYDNTIPLF 214 (431)
T ss_pred cCCCEEEEcchhHHHHHHHHHHHHHHhhhcCCcccCCC-ccccccccccccCCCCccccCCCCCEeeec
Confidence 45677777999964 3456666544321 11 134 23332 46788889999999999998554
No 119
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=90.18 E-value=0.22 Score=62.92 Aligned_cols=78 Identities=26% Similarity=0.311 Sum_probs=61.3
Q ss_pred HHHHHHHHHHcCCcccccc--------------ccccccccccCCCceecccccccceechHHHHHHHHhhhccCCCceE
Q 001708 477 REAVNEALKKKGLYRGAKD--------------NEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKLE 542 (1022)
Q Consensus 477 r~~vi~~L~~~gll~~~~~--------------~~~~~p~c~Rs~~~i~~~~~~QWFi~~~~l~~~al~~v~~~~~~~i~ 542 (1022)
-+-+.-.|.++||+...+. ..-.-..|||||.+|+.+-.+|||++..+.++++++.+ ..+.
T Consensus 137 ~QW~F~kL~ekGL~y~~~~~VnwcP~d~tvlaneqv~~g~~~r~~~~V~~kel~qw~~kit~yae~ll~~l-----~~l~ 211 (814)
T COG0495 137 IQWQFLKLYEKGLAYRKEAPVNWCPVDGTVLANEQVIDGGCWRCGEPVEIKELTQWFFKITDYADELLDDL-----DKLA 211 (814)
T ss_pred HHHHHHHHHHCCCEEeccccceeCCCcCCccccceeecCCcccCCCceeEeeeEEEEEEechhHHHHHhhh-----hhhc
Confidence 3457788999999765432 11223679999999999999999999999999999887 3555
Q ss_pred -EeccccHHHHHHHHhhc
Q 001708 543 -LIPRQYTAEWRRWLEAI 559 (1022)
Q Consensus 543 -~~P~~~~~~~~~wl~~l 559 (1022)
..|+..+..-.+||..-
T Consensus 212 ~~wPE~Vk~mq~nWIg~s 229 (814)
T COG0495 212 TLWPETVKGMQRNWIGPS 229 (814)
T ss_pred cCCchhHHHHHHcCcCCC
Confidence 57999988888888643
No 120
>KOG1148 consensus Glutaminyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=90.00 E-value=0.77 Score=54.93 Aligned_cols=97 Identities=27% Similarity=0.295 Sum_probs=60.9
Q ss_pred EEEECCCCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeeeeeccCCccChhHHHHHHHHHHHHhCCCccccChHHHHHHH
Q 001708 177 FVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEV 256 (1022)
Q Consensus 177 f~i~~pPPy~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG~D~~Glp~q~~vEk~l~~~~~~~~~~~g~e~f~~~~ 256 (1022)
=|.+-=||-|||.||||||-..-+-==++++ +.|..-| -+|..- | |+
T Consensus 248 kV~TRFPPEPNG~LHIGHaKAInvNFgyAk~--~~G~cyL---RfDDTN-P-----Ek---------------------- 294 (764)
T KOG1148|consen 248 KVVTRFPPEPNGILHIGHAKAINVNFGYAKA--HGGVCYL---RFDDTN-P-----EK---------------------- 294 (764)
T ss_pred eeEEeCCCCCCceeeecchhheeechhhhhh--hCCeEEE---ecCCCC-c-----ch----------------------
Confidence 3667779999999999998653332223333 2232211 123221 1 11
Q ss_pred HHHHHHHHHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHHHcCcEEEcc
Q 001708 257 WKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLIYRDL 312 (1022)
Q Consensus 257 ~~~~~~~~~~i~~ql~rlG~s~DW~r~~~T~d~~~~~~v~~~F~~L~ekGlIyr~~ 312 (1022)
=.++|-..|++...-|| |.-.-.|.+.+|-....+.=+.|..+|+.|-..
T Consensus 295 --Eee~yf~sI~e~V~WLG----~~P~kvTysSDyFdqLy~~av~LIrkG~AYVcH 344 (764)
T KOG1148|consen 295 --EEEEYFESIKEMVAWLG----FEPYKVTYSSDYFDQLYELAVELIRKGKAYVCH 344 (764)
T ss_pred --hhHHHHHHHHHHHHHhC----CCceeeecchhHHHHHHHHHHHHHhcCceeEEe
Confidence 12455567777777777 556667888888777777778899999988543
No 121
>cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase. Discriminating Glutamyl-tRNA synthetase (GluRS) catalytic core domain . The discriminating form of GluRS is only found in bacteria and cellular organelles. GluRS is a monomer that attaches Glu to the appropriate tRNA. Like other class I tRNA synthetases, GluRS aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=89.53 E-value=0.66 Score=50.83 Aligned_cols=51 Identities=29% Similarity=0.417 Sum_probs=33.6
Q ss_pred cCcccccccccchHHHHHHHHHhhhcCCCCceEEEeccceeCCCCccceecCCc
Q 001708 656 TSVLETGHDILFFWVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGN 709 (1022)
Q Consensus 656 ~dl~~~G~Dil~fW~a~m~~~~~~l~~~~Pfk~V~~Hg~v~D~~GrKMSKSlGN 709 (1022)
.+..+-|.|.+- ...++..+.-+|.-..| .+..++.+++.+|+||||+.||
T Consensus 119 ithViRG~D~~~-~t~~q~~l~~aLg~~~p--~~~h~pll~~~~g~KLSKR~~~ 169 (239)
T cd00808 119 ITHVIRGEEHLS-STPKQILLYEALGWEPP--KFAHLPLILNPDGKKLSKRKGD 169 (239)
T ss_pred CCEEEEChhhhh-ChHHHHHHHHHcCCCCC--ceEeeccccCCCCCcccCCCCC
Confidence 344455777543 44555555445543444 4566788889999999999999
No 122
>PLN02563 aminoacyl-tRNA ligase
Probab=88.97 E-value=0.48 Score=61.63 Aligned_cols=81 Identities=25% Similarity=0.312 Sum_probs=64.6
Q ss_pred hhHHHHHHHHHHHcCCcccccc--------------ccccccccccCCCceecccccccceechHHHHHHHHhhhccCCC
Q 001708 474 FKAREAVNEALKKKGLYRGAKD--------------NEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKK 539 (1022)
Q Consensus 474 ~~ar~~vi~~L~~~gll~~~~~--------------~~~~~p~c~Rs~~~i~~~~~~QWFi~~~~l~~~al~~v~~~~~~ 539 (1022)
...-..+...|-++|++...+. .+-.+++|+|||.+++.+...|||++++++++++++.+ +
T Consensus 211 ~~~~q~~F~~L~~~GliY~~~~~v~wcp~~~T~La~~Ev~~~~~~~~~~~~~~~~~~q~f~~it~ya~~L~~~l---~-- 285 (963)
T PLN02563 211 YKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGLSERGGHPVIRKPMRQWMLKITAYADRLLEDL---D-- 285 (963)
T ss_pred HHHHHHHHHHHHHCCCEEeeeeeeeecCCcCCCCCHHHhhcCCCcCCCCceEEEecceeEEecchhHHHHHHhh---h--
Confidence 3455788899999999765432 12235789999999999999999999999999999998 4
Q ss_pred ceEEeccccHHHHHHHHhhcc
Q 001708 540 KLELIPRQYTAEWRRWLEAIR 560 (1022)
Q Consensus 540 ~i~~~P~~~~~~~~~wl~~l~ 560 (1022)
.+. .|+..++.-.+||..-.
T Consensus 286 ~~~-wp~~v~~~q~nwiG~s~ 305 (963)
T PLN02563 286 DLD-WPESIKEMQRNWIGRSE 305 (963)
T ss_pred hcC-CCHHHHHHHHHhccccc
Confidence 445 59999999999986443
No 123
>COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=88.86 E-value=0.36 Score=54.61 Aligned_cols=61 Identities=25% Similarity=0.294 Sum_probs=37.4
Q ss_pred CCcCcccccccccc-hHHHHHHHHHhhh--cCCCCceEEEecc--ceeCCCC-ccceecCCc-ccCcc
Q 001708 654 YPTSVLETGHDILF-FWVARMVMLGIKL--GGEVPFTKVYLHP--MIRDAHG-RKMSKSLGN-VIDPL 714 (1022)
Q Consensus 654 ~P~dl~~~G~Dil~-fW~a~m~~~~~~l--~~~~Pfk~V~~Hg--~v~D~~G-rKMSKSlGN-vIdP~ 714 (1022)
|-+++.-.|.||-- .=.+|=++..... ....|--+.+.|. ++.+.+| +|||||.+| +|...
T Consensus 144 ~~a~~VPVG~DQ~qHleLtRDiA~rfn~~y~~~f~~P~~~~~~~~~i~gL~g~~KMSkS~~ns~I~L~ 211 (314)
T COG0180 144 YQATLVPVGEDQDQHLELTRDIARRFNHLYGEVFPLPEALISKVARLPGLDGPGKMSKSDPNSAIFLL 211 (314)
T ss_pred ccCCeeccCCCchHHHHHHHHHHHHHHhhcCCccCCccccccCCCcccCCCCCCcccccCCCCeeecc
Confidence 33455566888853 2344544433321 0112223677777 8999999 899999999 66543
No 124
>PRK12282 tryptophanyl-tRNA synthetase II; Reviewed
Probab=88.83 E-value=0.33 Score=55.82 Aligned_cols=62 Identities=26% Similarity=0.305 Sum_probs=39.6
Q ss_pred cCCcCcccccccccc-hHHHHHHHHHhhh-cCC----CCceEEEe-ccceeCCCC-ccceecCCcccCcch
Q 001708 653 FYPTSVLETGHDILF-FWVARMVMLGIKL-GGE----VPFTKVYL-HPMIRDAHG-RKMSKSLGNVIDPLE 715 (1022)
Q Consensus 653 ~~P~dl~~~G~Dil~-fW~a~m~~~~~~l-~~~----~Pfk~V~~-Hg~v~D~~G-rKMSKSlGNvIdP~d 715 (1022)
.|.+|+...|.||.. +=++|-++-.+.. .++ .| +.++. |.+|.+.+| .|||||.+|.|...|
T Consensus 140 ~~~~d~vpvG~DQ~~h~~laRdiA~~~n~~~~~~~~~~p-~~~~~~~~~i~~L~g~~KMSKS~~~~I~L~D 209 (333)
T PRK12282 140 AFKATLVPVGDDQLPMIEQTREIVRRFNSLYGTDVLVEP-EALLPEAGRLPGLDGKAKMSKSLGNAIYLSD 209 (333)
T ss_pred hhCCCEEEeccccHHHHHHHHHHHHHHhhhcCCccccCc-hhcccCCCcccCCCCCCcCCCCCCCeeeeeC
Confidence 367788888999964 4456666654432 121 12 22221 567777777 899999999886544
No 125
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=88.77 E-value=0.4 Score=56.18 Aligned_cols=53 Identities=21% Similarity=0.267 Sum_probs=36.0
Q ss_pred cCcccccccccchHHHHHHHHHhhh-cCCCCceEEEeccceeCCCCccceecCCcccC
Q 001708 656 TSVLETGHDILFFWVARMVMLGIKL-GGEVPFTKVYLHPMIRDAHGRKMSKSLGNVID 712 (1022)
Q Consensus 656 ~dl~~~G~Dil~fW~a~m~~~~~~l-~~~~Pfk~V~~Hg~v~D~~GrKMSKSlGNvId 712 (1022)
.|+.+.|.|| |..-|+..-+.- .|..+ .-.+++.++.+.+|.|||||.||.++
T Consensus 181 ~dlq~GG~DQ---~~ni~~grdl~rr~g~~~-~~~lt~PLL~~ldG~KmgKs~~~a~~ 234 (401)
T COG0162 181 KDLQLGGSDQ---WGNILAGRDLIRRLGQKK-VVGLTTPLLTGLDGKKMGKSEGGAVW 234 (401)
T ss_pred cchhcCChHH---HHHHHHHHHHHHHhCCCC-eEEEEeccccCCCCCcccccCCCceE
Confidence 4588899999 555444322211 22222 45778899999999999999999443
No 126
>PTZ00126 tyrosyl-tRNA synthetase; Provisional
Probab=88.58 E-value=0.38 Score=56.26 Aligned_cols=59 Identities=27% Similarity=0.233 Sum_probs=37.7
Q ss_pred CCcCcccccccc-cchHHHHHHHHHhhhcCCCCceEEEeccceeCC-CC-ccceecCCc-ccCcch
Q 001708 654 YPTSVLETGHDI-LFFWVARMVMLGIKLGGEVPFTKVYLHPMIRDA-HG-RKMSKSLGN-VIDPLE 715 (1022)
Q Consensus 654 ~P~dl~~~G~Di-l~fW~a~m~~~~~~l~~~~Pfk~V~~Hg~v~D~-~G-rKMSKSlGN-vIdP~d 715 (1022)
|-+|+...|.|| -++=++|-++-.+... ..| -++.|.+|... +| .|||||.+| .|...|
T Consensus 209 l~adivpvG~DQ~~~~~LaRdia~~~~~~-~~~--~~~~~~~lpgL~dg~~KMSKS~~ns~I~L~D 271 (383)
T PTZ00126 209 LKADICQLGMDQRKVNMLAREYCDKKKIK-KKP--IILSHHMLPGLLEGQEKMSKSDPNSAIFMED 271 (383)
T ss_pred cCCCEEEeCccHHHHHHHHHHHHHHhCCC-CCc--eeecccccccCCCCCCCCCcCCCCCeecCCC
Confidence 457777889999 4455556555433211 123 34468888887 45 799999987 576544
No 127
>TIGR00233 trpS tryptophanyl-tRNA synthetase. This model represents tryptophanyl-tRNA synthetase. Some members of the family have a pfam00458 domain amino-terminal to the region described by this model.
Probab=88.31 E-value=0.34 Score=55.60 Aligned_cols=60 Identities=22% Similarity=0.197 Sum_probs=36.6
Q ss_pred CCcCcccccccccc-hHHHHHHHHHhhh-cC---CCCceEEEeccc---eeCCCCccceecCCc-ccCcch
Q 001708 654 YPTSVLETGHDILF-FWVARMVMLGIKL-GG---EVPFTKVYLHPM---IRDAHGRKMSKSLGN-VIDPLE 715 (1022)
Q Consensus 654 ~P~dl~~~G~Dil~-fW~a~m~~~~~~l-~~---~~Pfk~V~~Hg~---v~D~~GrKMSKSlGN-vIdP~d 715 (1022)
|-+|+...|.||.. +=++|-++.-+.- .| ..| ..+.|.+ +...+|+|||||.+| .|...|
T Consensus 138 ~~~d~vpvG~DQ~~h~elaRdia~r~n~~~~~~f~~P--~~l~~~~~~~l~gl~~~KMSKS~~~s~I~L~D 206 (328)
T TIGR00233 138 YQADLVPVGIDQDQHLELTRDLAERFNKKFKNFFPKP--ESLISKFFPRLMGLSGKKMSKSDPNSAIFLTD 206 (328)
T ss_pred cCCCeeecccccHHHHHHHHHHHHHhhhhcCcccCCC--hhhhccccCCCCCCCCCcCCCCCCCCeEeecC
Confidence 34567778999964 4455665544331 11 345 3445555 556677999999997 765543
No 128
>TIGR00234 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples.
Probab=88.11 E-value=0.44 Score=55.70 Aligned_cols=55 Identities=22% Similarity=0.170 Sum_probs=35.4
Q ss_pred cCcccccccccch-HHHHHHHHHhhhcCCCCceEEEeccceeCCCCccceecCCcccCcc
Q 001708 656 TSVLETGHDILFF-WVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPL 714 (1022)
Q Consensus 656 ~dl~~~G~Dil~f-W~a~m~~~~~~l~~~~Pfk~V~~Hg~v~D~~GrKMSKSlGNvIdP~ 714 (1022)
.|+...|.||... =..++++ -.+.+..+| .+++.++...+|.|||||.||.|+..
T Consensus 178 ~di~~gG~DQ~~ni~~g~dLa--r~~~~~~~~--~~t~pLl~~~dg~KmgKS~~~~i~l~ 233 (377)
T TIGR00234 178 VDLQIGGSDQWGNIRKGRDLI--RRNLPSLGF--GLTVPLLTPADGEKMGKSGGGAVSLD 233 (377)
T ss_pred CCeeEecchhHHHHHHHHHHH--HHhcCCCce--eeceeeecCCCCCCccCCCCCcccCC
Confidence 5688889999543 1223332 222333343 35566677778999999999998764
No 129
>PRK12285 tryptophanyl-tRNA synthetase; Reviewed
Probab=87.60 E-value=0.35 Score=56.28 Aligned_cols=59 Identities=20% Similarity=0.194 Sum_probs=38.2
Q ss_pred CcCcccccccccc-hHHHHHHHHHhh--hcCCCCceEEEeccceeCCCCccceecC-CcccCcch
Q 001708 655 PTSVLETGHDILF-FWVARMVMLGIK--LGGEVPFTKVYLHPMIRDAHGRKMSKSL-GNVIDPLE 715 (1022)
Q Consensus 655 P~dl~~~G~Dil~-fW~a~m~~~~~~--l~~~~Pfk~V~~Hg~v~D~~GrKMSKSl-GNvIdP~d 715 (1022)
-.++...|.||.. +=++|-++-.+. ..-..| ..+.|.++...+|.|||||. +|.|...|
T Consensus 203 ~~~lvPvG~DQ~~h~~ltRdiA~r~n~~~gf~~P--~~l~~~~lpgL~G~KMSkS~~~s~I~L~D 265 (368)
T PRK12285 203 KPTLVPVGIDQDPHIRLTRDIAERLHGGYGFIKP--SSTYHKFMPGLTGGKMSSSKPESAIYLTD 265 (368)
T ss_pred CceEEEeccchHHHHHHHHHHHHHHhhhcCCCCc--hhHhhhcccCCCCCcCCCCCCCCeeeccC
Confidence 3456667999964 445565554431 011234 34557788899999999998 67887654
No 130
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches.
Probab=86.86 E-value=0.37 Score=62.05 Aligned_cols=81 Identities=22% Similarity=0.278 Sum_probs=62.3
Q ss_pred hHHHHHHHHHHHcCCcccccc--------------ccc-cccccccCCCceecccccccceechHHHHHHHHhhhccCCC
Q 001708 475 KAREAVNEALKKKGLYRGAKD--------------NEM-RLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKK 539 (1022)
Q Consensus 475 ~ar~~vi~~L~~~gll~~~~~--------------~~~-~~p~c~Rs~~~i~~~~~~QWFi~~~~l~~~al~~v~~~~~~ 539 (1022)
++-..+...|-++|++...+. .+. ..++|||||.+++.+-.+|||++++++++++++.+ .
T Consensus 130 ~~~~~~F~~L~~kGliy~~~~~v~wcp~~~t~La~~ev~~~g~~~~~g~~v~~~~~~~~f~~i~~~~~~l~~~l-----~ 204 (842)
T TIGR00396 130 KWTQWIFLELFEKGLAYVKEADVNWCPNDGTVLANEQVDSDGRSWRGGTPVEKKELKQWFLKITAYAEELLNDL-----E 204 (842)
T ss_pred HHHHHHHHHHHHCCCeEeeccceEEeCCCCCCccHHHHhhcCccccCCCcceEeecceeEEehhhhHHHHHHHH-----h
Confidence 445567788889998653211 011 12689999999999999999999999999999988 3
Q ss_pred ceEEeccccHHHHHHHHhhcc
Q 001708 540 KLELIPRQYTAEWRRWLEAIR 560 (1022)
Q Consensus 540 ~i~~~P~~~~~~~~~wl~~l~ 560 (1022)
.+...|++.++...+||..-.
T Consensus 205 ~~~~wp~~v~~~q~~wig~s~ 225 (842)
T TIGR00396 205 ELDHWPESVKEMQRNWIGKSE 225 (842)
T ss_pred hhccccHHHHHHHHhcccccc
Confidence 556689999999999986443
No 131
>PRK12283 tryptophanyl-tRNA synthetase; Reviewed
Probab=85.72 E-value=0.38 Score=56.10 Aligned_cols=24 Identities=42% Similarity=0.499 Sum_probs=20.2
Q ss_pred ccceeCCCCccceecCCcccCcch
Q 001708 692 HPMIRDAHGRKMSKSLGNVIDPLE 715 (1022)
Q Consensus 692 Hg~v~D~~GrKMSKSlGNvIdP~d 715 (1022)
|.+|.+.+|+|||||.||.|...|
T Consensus 254 ~~~I~gLdg~KMSKS~~n~I~L~D 277 (398)
T PRK12283 254 ASKMPGLDGQKMSKSYGNTIGLRE 277 (398)
T ss_pred CCcccCCCCCcCCCCCCCeeeCcC
Confidence 677888899999999999887544
No 132
>cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase. Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. TrpRS is a homodimer which attaches Tyr to the appropriate tRNA. TrpRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding
Probab=85.55 E-value=0.76 Score=51.59 Aligned_cols=59 Identities=22% Similarity=0.159 Sum_probs=36.9
Q ss_pred CcCcccccccccc-hHHHHHHHHHhhhc----CCCCceEEEec--cceeCCCC--ccceecCC-cccCcch
Q 001708 655 PTSVLETGHDILF-FWVARMVMLGIKLG----GEVPFTKVYLH--PMIRDAHG--RKMSKSLG-NVIDPLE 715 (1022)
Q Consensus 655 P~dl~~~G~Dil~-fW~a~m~~~~~~l~----~~~Pfk~V~~H--g~v~D~~G--rKMSKSlG-NvIdP~d 715 (1022)
-+++...|.||.. +=++|-++..+.-. -..| ..+.| .+|...+| .|||||.| |.|...|
T Consensus 137 ~~~~vpvG~DQ~~h~~l~Rdia~r~n~~~~~~~~~P--~~l~~~~~~i~~l~g~~~KMSKS~~~~~I~L~d 205 (280)
T cd00806 137 KACLVPVGIDQDPHLELTRDIARRFNKLYGEIFPKP--AALLSKGAFLPGLQGPSKKMSKSDPNNAIFLTD 205 (280)
T ss_pred cCCEEeeccccHHHHHHHHHHHHHhccccccccCCC--eeeccCCCccccCCCCCCcccCCCCCCeEEeeC
Confidence 3466667999964 23334443332210 1234 56667 88887777 59999999 9997654
No 133
>KOG0435 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=84.52 E-value=0.36 Score=58.46 Aligned_cols=75 Identities=24% Similarity=0.286 Sum_probs=53.3
Q ss_pred HHHHHHHHHHcCCcccccc------cc---------ccccccccCCCceecccccccceechHHHHHHHHhhhccCCCce
Q 001708 477 REAVNEALKKKGLYRGAKD------NE---------MRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKKKL 541 (1022)
Q Consensus 477 r~~vi~~L~~~gll~~~~~------~~---------~~~p~c~Rs~~~i~~~~~~QWFi~~~~l~~~al~~v~~~~~~~i 541 (1022)
.+-|.=.|-++||.-..|- .. -.-+++||||.++|.....||||+.+++++++++.+ + .+
T Consensus 160 TQwiFlkLfe~GLAYq~Ea~VNWDPvD~TVLAnEQVD~~G~SWRSGA~VEkK~LrQWfikttaYAk~L~d~L---~--~L 234 (876)
T KOG0435|consen 160 TQWIFLKLFEKGLAYQAEAEVNWDPVDKTVLANEQVDADGCSWRSGAKVEKKKLRQWFIKTTAYAKRLLDGL---E--TL 234 (876)
T ss_pred HHHHHHHHHHhhhhhccccccccCcccceeecchhhcccCccccccchhhHHHHHHHHhhhhHHHHHHHHHH---H--hh
Confidence 4456666777887654331 11 134689999999999999999999999999999998 3 44
Q ss_pred EEeccccHHHHHHHHh
Q 001708 542 ELIPRQYTAEWRRWLE 557 (1022)
Q Consensus 542 ~~~P~~~~~~~~~wl~ 557 (1022)
.=.|+ .++.-.+||.
T Consensus 235 ~~W~~-vk~mQrnWIG 249 (876)
T KOG0435|consen 235 PEWPE-VKDMQRNWIG 249 (876)
T ss_pred hhhhh-HHHHHHhhcc
Confidence 33344 5566566664
No 134
>PRK00927 tryptophanyl-tRNA synthetase; Reviewed
Probab=83.15 E-value=0.8 Score=52.69 Aligned_cols=61 Identities=26% Similarity=0.299 Sum_probs=39.3
Q ss_pred CCcCcccccccccc-hHHHHHHHHHhhh-cC---CCCceEEEe-c-cceeCCCCc--cceecCC---cccCcch
Q 001708 654 YPTSVLETGHDILF-FWVARMVMLGIKL-GG---EVPFTKVYL-H-PMIRDAHGR--KMSKSLG---NVIDPLE 715 (1022)
Q Consensus 654 ~P~dl~~~G~Dil~-fW~a~m~~~~~~l-~~---~~Pfk~V~~-H-g~v~D~~Gr--KMSKSlG---NvIdP~d 715 (1022)
|-+|+...|.||.. +=++|-++..+.. .| ..| ..++. | .++...+|. |||||.+ |.|...|
T Consensus 137 ~~~divpvG~DQ~~h~elaRdia~~~n~~~~~~f~~P-~~i~~~~~~~l~gL~g~~~KMSKS~~~~~~~I~l~D 209 (333)
T PRK00927 137 YKADLVPVGEDQKQHLELTRDIARRFNNLYGEVFPVP-EPLIPKVGARVMGLDGPTKKMSKSDPNDNNTINLLD 209 (333)
T ss_pred cCCCEEeeccchHHHHHHHHHHHHHhhhhccccCCCC-hhhhccccccccCCCCCCCCCCCCCCCCCCeEEeeC
Confidence 45678888999975 4555665543321 11 245 33443 2 668788887 9999999 7886654
No 135
>PRK00390 leuS leucyl-tRNA synthetase; Validated
Probab=82.80 E-value=1.4 Score=56.73 Aligned_cols=86 Identities=27% Similarity=0.329 Sum_probs=64.5
Q ss_pred hhHHHHHHHHHHHcCCcccccc--------------ccccccccccCCCceecccccccceechHHHHHHHHhhhccCCC
Q 001708 474 FKAREAVNEALKKKGLYRGAKD--------------NEMRLGLCSRSNDVVEPMIKPQWYVNCNSMAMEALYAVMDDDKK 539 (1022)
Q Consensus 474 ~~ar~~vi~~L~~~gll~~~~~--------------~~~~~p~c~Rs~~~i~~~~~~QWFi~~~~l~~~al~~v~~~~~~ 539 (1022)
.++-..+...|-++|++...+. .+...++|+|||.+++.+..+|||+++.++++++++.+ +
T Consensus 132 ~~~v~~~f~~L~~~Gliy~~~~~v~wcp~~~t~La~~ev~~~~~~~~~~~~~~~~~~~~f~~i~~~~~~L~~~l---~-- 206 (805)
T PRK00390 132 YKWTQWIFLKLYEKGLAYRKESPVNWCPVDGTVLANEQVIDGRCWRCGAPVEKKELRQWFLKITDYADELLDDL---D-- 206 (805)
T ss_pred HHHHHHHHHHHHHCCCEEEecCEEEecCCcCCCCCHHHhhCCeecccCCeeEEEecceeeEecchhHHHHHHHH---H--
Confidence 3456678889999998764321 12224789999999999999999999999999999987 3
Q ss_pred ceEEeccccHHHHHHHHhhccCccc
Q 001708 540 KLELIPRQYTAEWRRWLEAIRDWCV 564 (1022)
Q Consensus 540 ~i~~~P~~~~~~~~~wl~~l~DWcI 564 (1022)
.+.=.|+..+..-.+||..-.-+.|
T Consensus 207 ~~~~w~~~v~~~~~~wig~~~~~~i 231 (805)
T PRK00390 207 KLEDWPEKVKTMQRNWIGRSEGAEV 231 (805)
T ss_pred hhccCcHHHHHHHHhhccccceEEE
Confidence 3322488888888899875444433
No 136
>PRK04156 gltX glutamyl-tRNA synthetase; Provisional
Probab=82.76 E-value=2.9 Score=51.30 Aligned_cols=38 Identities=8% Similarity=0.177 Sum_probs=29.2
Q ss_pred CCCchHHHHHHHhccCCCcccccchhhhHHH-HHHHHHH
Q 001708 756 ECGTDALRFALVSYTAQSDKINLDIQRVVGY-RQWCNKL 793 (1022)
Q Consensus 756 ~~GaDaLR~~L~~~~~~~~Dinf~~~~~~~~-r~f~nkl 793 (1022)
.+-++|+|.+++..+....|..|+++.+... |+.++..
T Consensus 371 G~~PeAi~~fl~~lG~s~~~~~~~~~~L~~~nr~~ld~~ 409 (567)
T PRK04156 371 GILPEAIRELIIEVGVKETDATISWENLYAINRKLIDPI 409 (567)
T ss_pred CCCHHHHHHHHHHhCCCCCCcccCHHHHHHHHHHHHhcc
Confidence 5779999999998777667999999988763 4455543
No 137
>TIGR00464 gltX_bact glutamyl-tRNA synthetase, bacterial family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the bacterial and mitochondrial forms of the enzyme. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu). This model is highly specific. Proteins with positive scores below the trusted cutoff may be fragments rather than full-length sequences.
Probab=80.67 E-value=4.1 Score=49.19 Aligned_cols=110 Identities=18% Similarity=0.213 Sum_probs=60.8
Q ss_pred CcccccccccchHHHHHHHHHhhhcCCCCceEEEeccceeCCCCccceecCCcccCcchhhcc-ccchhHHHhhh-cCCC
Q 001708 657 SVLETGHDILFFWVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVING-ISLEGLHKRLE-EGNL 734 (1022)
Q Consensus 657 dl~~~G~Dil~fW~a~m~~~~~~l~~~~Pfk~V~~Hg~v~D~~GrKMSKSlGNvIdP~dvI~g-~~l~~l~~~l~-~~nl 734 (1022)
+..+-|.|++. ...+.+.+.-+|.-..| ....++++++.+|+||||..| .+...++++. +.-+.+...+. .|..
T Consensus 199 thvIrG~d~~~-~t~~~~~l~~aLg~~~p--~~~H~p~l~~~~g~kLSKR~g-~~~l~~l~~~g~~p~a~~~~~~~lG~~ 274 (470)
T TIGR00464 199 THVIRGEDHIS-NTPKQILIYQALGWKIP--VFAHLPMILDEDGKKLSKRDG-ATSIMQFKEQGYLPEALINYLALLGWS 274 (470)
T ss_pred CEEEECchhhc-CHHHHHHHHHHcCCCCC--eEEEEeeeecCCCccccccCC-CccHHHHHHCCCCHHHHHHHHHHcCCC
Confidence 34446777654 23344333334432334 566667788999999999999 6666666653 23233333321 2222
Q ss_pred ChHHHHHHHhcccCCCCCCCCCCCchHHHHHHHhccCCCcccccchhhhHH
Q 001708 735 DPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLDIQRVVG 785 (1022)
Q Consensus 735 ~~~e~~~a~~~~~~~~~~~i~~~GaDaLR~~L~~~~~~~~Dinf~~~~~~~ 785 (1022)
++.+ .. ..--.+++|++.++..+ ..++.||++.+.-
T Consensus 275 ~~~~-------------~e-~~~~~~~i~~f~l~~~~-~~~~~fd~~kL~~ 310 (470)
T TIGR00464 275 PPDD-------------QE-FFSLEELIEIFSLNRVS-KSPAKFDWKKLQW 310 (470)
T ss_pred CCCc-------------cc-cCCHHHHHHhcCcccCC-CCCCeecHHHHHH
Confidence 2110 00 01124889988766444 3688999888653
No 138
>PRK12285 tryptophanyl-tRNA synthetase; Reviewed
Probab=79.58 E-value=9.4 Score=44.63 Aligned_cols=61 Identities=18% Similarity=0.220 Sum_probs=39.5
Q ss_pred HHHHHcCCcccCCC--------CCCCcEEEECCCCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeeeeeccCCc
Q 001708 158 SWWENSGYFIADNK--------SSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDH 223 (1022)
Q Consensus 158 ~~W~~~~~f~~~~~--------~~k~~f~i~~pPPy~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG~D~ 223 (1022)
..+-+.|+|-...+ +.+++|.+.+|. -|||.+||||.+. -..+.+++. .|+.+.+..+=+|
T Consensus 40 h~~~rR~~~~~hrd~d~il~~~~~~~~~~iytG~-~PSG~lHLGh~~~---~~~~~~lQ~-~g~~~~i~IaD~h 108 (368)
T PRK12285 40 HPLMRRGIIFGHRDYDKILEAYRNGKPFAVYTGF-MPSGPMHIGHKMV---FDELKWHQE-FGANVYIPIADDE 108 (368)
T ss_pred chHHhcCeeeecCCHHHHHHHHhcCCCeEEEEcc-CCCCCccHHHHHH---HHHHHHHHh-cCCCEEEEecchH
Confidence 45566677655432 234466667663 4679999999753 334666666 7888887777555
No 139
>KOG1195 consensus Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=77.20 E-value=32 Score=41.32 Aligned_cols=189 Identities=12% Similarity=0.124 Sum_probs=100.4
Q ss_pred CceEEEeccceeCCCCccceecCCcccCcchhhccccchhHHHhhh---c---CCCChHHHHHHHhcccCCCCCCCCCCC
Q 001708 685 PFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLEGLHKRLE---E---GNLDPKELEVAKKGQKADFPNGIPECG 758 (1022)
Q Consensus 685 Pfk~V~~Hg~v~D~~GrKMSKSlGNvIdP~dvI~g~~l~~l~~~l~---~---~nl~~~e~~~a~~~~~~~~~~~i~~~G 758 (1022)
|+.+ ++-|.| +=||.-+|+++-..|+++..... +++... + -+.+|+++.. -.|
T Consensus 356 ~~qH-V~~G~v-----~GmsTRkG~~~fl~dil~e~re~-m~e~M~s~~t~~~~~~~~~~vad--------------~lg 414 (567)
T KOG1195|consen 356 KLQH-VNFGRV-----QGMSTRKGKVVFLDDILEEAREQ-MLEVMASNKTKPVQMANPDEVAD--------------RLG 414 (567)
T ss_pred hcce-eccccc-----ccccccCCceeeHHHHHHHHHHH-HHHHHHhccCCCCCCCCHHHHHH--------------HHh
Confidence 4433 344555 47999999999999999842211 111111 1 1234444433 467
Q ss_pred chHHHHHHHhccCCCcccccchhhhHHHHH----HHHHHHHHHH--HHHhhcCCCCCCCC--CCCCCCCC-hhhHHHHHH
Q 001708 759 TDALRFALVSYTAQSDKINLDIQRVVGYRQ----WCNKLWNAVR--FSMSKLGEGFVPPL--KLHPHNLP-FSCKWILSV 829 (1022)
Q Consensus 759 aDaLR~~L~~~~~~~~Dinf~~~~~~~~r~----f~nkl~N~~r--f~l~~l~~~~~p~~--~~~~~~~~-~~D~wil~~ 829 (1022)
+-|+.+-..-. .-..+..|+++++-.... ++ .++-+| -+..+..+ +.+.. ..+...+. +.-.-++..
T Consensus 415 ~sAviv~d~k~-rr~s~yeF~w~~~~~~~gdtg~yL--QY~HsRL~Slerk~~~-~~~~~l~~~d~~~l~ep~~~~Lv~~ 490 (567)
T KOG1195|consen 415 LSAVIVQDFKG-RRISNYEFSWNRVLSFEGDTGPYL--QYTHSRLRSLERKFSD-VTLDDLDEIDFSLLTEPDALLLVRL 490 (567)
T ss_pred hHHHHHHHHHH-HhcccceEEhhhhheecCCchHHH--HHHHHHHHHHHHhccc-cCchhhhccchhhcCChhHHHHHHH
Confidence 77777654432 223578888887532110 00 011111 12222221 21211 11111111 112347788
Q ss_pred HHHHHHHHHhhhhcCCHHHHHHHHHHHHHhhhhHHHHHhhcccccCCCcccHHHHHHHHHHHHHHHHHHHHHH
Q 001708 830 LNKAISRTASSLNSYEFSDAASTVYSWWQYQFCDVFIEAIKPYFAGDNPAFASERSAAQHVLWVCLETGLRLL 902 (1022)
Q Consensus 830 L~~~~~~v~~a~e~~~f~~a~~~i~~f~~~~l~~~Yle~~K~~l~~~~~~~~~~r~~a~~~L~~~L~~~l~LL 902 (1022)
|..+.+.+..+++.++-+..+..+++.. ..++..|=. -|..+...+...+|.........+|..++++|
T Consensus 491 L~~fp~vve~s~e~lE~~~lV~YL~~La-~a~s~~yk~---l~V~d~~~eia~aRL~Lf~AvRqVL~ngm~lL 559 (567)
T KOG1195|consen 491 LLQFPEVVEKSMEQLEPCTLVTYLFKLA-HAVSSAYKI---LWVKDSPMEIALARLLLFSAVRQVLNNGMRLL 559 (567)
T ss_pred HhhhHHHHHHHHHhhcchhHHHHHHHHH-HHHHhHHhh---eeecCCcHHHHHHHHHHHHHHHHHHHhHHHHh
Confidence 8999999999999999999999998876 666666622 12222222222234444444455666777776
No 140
>PLN02486 aminoacyl-tRNA ligase
Probab=76.70 E-value=11 Score=44.26 Aligned_cols=45 Identities=16% Similarity=0.115 Sum_probs=29.3
Q ss_pred CCCcEEEECCCCCCCC-CCCcchhHHHHHHHHHHHHHHhCCCeeeeeccCC
Q 001708 173 SKPSFVIVLPPPNVTG-ALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMD 222 (1022)
Q Consensus 173 ~k~~f~i~~pPPy~nG-~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG~D 222 (1022)
.+++|++.+| =-||| .|||||..... .+..+++..|..+....+ |
T Consensus 70 ~~~~~~vYtG-~~PSg~~lHlGHlv~~~---~~~~lQ~~~~~~~~I~ia-D 115 (383)
T PLN02486 70 KGEKFYLYTG-RGPSSEALHLGHLIPFM---FTKYLQDAFKVPLVIQLT-D 115 (383)
T ss_pred cCCCeEEEeC-CCCCCccccHHHHHHHH---HHHHHHHhCCCeEEEEec-C
Confidence 3457888887 47898 59999965533 344555566766665533 5
No 141
>PLN02486 aminoacyl-tRNA ligase
Probab=74.92 E-value=3 Score=48.91 Aligned_cols=54 Identities=26% Similarity=0.186 Sum_probs=33.4
Q ss_pred cccccccccc-hHHHHHHHHHhhhcCCCCceEEEeccceeCCCC--ccceecCCc-ccCcch
Q 001708 658 VLETGHDILF-FWVARMVMLGIKLGGEVPFTKVYLHPMIRDAHG--RKMSKSLGN-VIDPLE 715 (1022)
Q Consensus 658 l~~~G~Dil~-fW~a~m~~~~~~l~~~~Pfk~V~~Hg~v~D~~G--rKMSKSlGN-vIdP~d 715 (1022)
+.-.|.||.. +=++|-++-. +....| .++.|.++....| .|||||.+| .|...|
T Consensus 222 lVPvG~DQd~~~~ltRdia~r--~~~~kp--~~~~~~~lp~L~g~~~KMSkS~~nsaI~L~D 279 (383)
T PLN02486 222 LIPCAIDQDPYFRMTRDVAPR--LGYYKP--ALIESRFFPALQGESGKMSASDPNSAIYVTD 279 (383)
T ss_pred eeecccchHHHHHHHHHHHHH--hCCCCc--ceeccccccCCCCCCCcCcCcCCCCeeeccC
Confidence 4445888863 3445555433 333356 3334567776676 799999988 687655
No 142
>cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases. Arginyl tRNA synthetase (ArgRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. There are at least three subgroups of ArgRS. One type contains both characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The second subtype lacks the KMSKS motif; however, it has a lysine N-terminal to the HIGH motif, which serves as the functional counterpart to the second lysine of the KMSKS motif. A third group, which is found primarily in archaea and a few bacteria, lacks both the KMSKS motif and the HIGH loop lysine.
Probab=74.79 E-value=3.6 Score=44.17 Aligned_cols=50 Identities=22% Similarity=0.130 Sum_probs=32.1
Q ss_pred cccccccccchHHHHHHHHHhhhcCC-CCceEEEeccceeCCCCccceecCC
Q 001708 658 VLETGHDILFFWVARMVMLGIKLGGE-VPFTKVYLHPMIRDAHGRKMSKSLG 708 (1022)
Q Consensus 658 l~~~G~Dil~fW~a~m~~~~~~l~~~-~Pfk~V~~Hg~v~D~~GrKMSKSlG 708 (1022)
+++.|.||. .++.++..+.-.+.-. .|--..+.+|+|+..+|.||||..|
T Consensus 162 i~v~g~~~~-~~~~~~~~~~~~lg~~~~~~~~h~~~~~v~~~~~~kmS~R~G 212 (212)
T cd00671 162 IYVVGADHH-GHFKRLFAALELLGYDEAKKLEHLLYGMVNLPKEGKMSTRAG 212 (212)
T ss_pred EEEECCCHH-HHHHHHHHHHHHcCCCCCCCeEEEEEEeEEcCCCCCCCCCCC
Confidence 457888875 3455554443333222 3434556679999888999999987
No 143
>cd00807 GlnRS_core catalytic core domain of glutaminyl-tRNA synthetase. Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Gln to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. GlnRS contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=71.94 E-value=11 Score=41.21 Aligned_cols=31 Identities=10% Similarity=0.174 Sum_probs=25.1
Q ss_pred CCCchHHHHHHHhccCCCcccccchhhhHHH
Q 001708 756 ECGTDALRFALVSYTAQSDKINLDIQRVVGY 786 (1022)
Q Consensus 756 ~~GaDaLR~~L~~~~~~~~Dinf~~~~~~~~ 786 (1022)
.+-++|++=|++..+....++.|+++.+...
T Consensus 197 G~~peal~~~l~~lG~s~~~~~~~~~~l~~~ 227 (238)
T cd00807 197 GVTPEAIRQFILRQGVSKADSTIDWDKLEAC 227 (238)
T ss_pred CCCHHHHHHHHHHhCCCCCCcccCHHHHHHH
Confidence 3558999999988887778999998877653
No 144
>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=68.95 E-value=4.4 Score=45.26 Aligned_cols=35 Identities=20% Similarity=0.385 Sum_probs=26.8
Q ss_pred CCCC-CCCcchhHHHHHHHHHHHHHHhCCCeeeeeccCCc
Q 001708 185 NVTG-ALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDH 223 (1022)
Q Consensus 185 y~nG-~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG~D~ 223 (1022)
-||| .|||||.+. + -.+.|++++ |++|.+.-|=.|
T Consensus 8 ~PTg~~lHLG~~~~-~--~~~~~lq~~-g~~~~ilI~D~~ 43 (269)
T cd00805 8 DPTAPSLHLGHLVP-L--MKLRDFQQA-GHEVIVLIGDAT 43 (269)
T ss_pred CCCCCcccHHHHHH-H--HHHHHHHHC-CCeEEEEECCCe
Confidence 3689 899999875 2 367788876 999988887554
No 145
>PRK01406 gltX glutamyl-tRNA synthetase; Reviewed
Probab=68.63 E-value=8.3 Score=46.63 Aligned_cols=108 Identities=21% Similarity=0.207 Sum_probs=59.3
Q ss_pred CcccccccccchHHHHHHHHHhhhcCCCCceEEEeccceeCCCCccceecCCcccCcchhhcc-ccchhHHHhhh-cCCC
Q 001708 657 SVLETGHDILFFWVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVING-ISLEGLHKRLE-EGNL 734 (1022)
Q Consensus 657 dl~~~G~Dil~fW~a~m~~~~~~l~~~~Pfk~V~~Hg~v~D~~GrKMSKSlGNvIdP~dvI~g-~~l~~l~~~l~-~~nl 734 (1022)
+-.+-|.|++- ...+.+.+--+|....| ....++++++.+|+||||..| .++..++++. +.-+.+...+. -|.-
T Consensus 209 thvIrG~d~~~-~t~~q~~l~~alG~~~p--~~~H~pli~~~~g~klSKR~g-~~~l~~l~~~G~~p~Ai~n~l~~lG~s 284 (476)
T PRK01406 209 THVIRGEDHLS-NTPKQILLYEALGWEVP--VFAHLPLILGPDGKKLSKRHG-ATSVEQYRDMGYLPEALLNYLALLGWS 284 (476)
T ss_pred CEEEECchhhc-CHHHHHHHHHHhCCCCC--eEEEeeeeeCCCCCcccCcCC-ccCHHHHHHCCCCHHHHHHHHHHhCCC
Confidence 33345777553 23344444444443444 455557888999999999999 6666666652 23333333332 1211
Q ss_pred -ChHHHHHHHhcccCCCCCCCCCCCchHHHHHHHhccCCCcccccchhhhHH
Q 001708 735 -DPKELEVAKKGQKADFPNGIPECGTDALRFALVSYTAQSDKINLDIQRVVG 785 (1022)
Q Consensus 735 -~~~e~~~a~~~~~~~~~~~i~~~GaDaLR~~L~~~~~~~~Dinf~~~~~~~ 785 (1022)
+..|+ .--.+++|++.+...+ ..++.||++.+.-
T Consensus 285 ~~~~e~----------------~~~~~~i~~f~l~~~~-~s~~~fd~~kL~~ 319 (476)
T PRK01406 285 HGDQEI----------------FSLEELIELFDLERVS-KSPARFDIKKLDW 319 (476)
T ss_pred CCcccc----------------CCHHHHHHhcChhhCC-CCCccccHHHHHH
Confidence 11111 1123778887665443 3578888877653
No 146
>PTZ00348 tyrosyl-tRNA synthetase; Provisional
Probab=68.25 E-value=4.5 Score=50.73 Aligned_cols=58 Identities=26% Similarity=0.135 Sum_probs=35.6
Q ss_pred CCcCcccccccccc-hHHHHHHHHHhhhcCCCCceEE-EeccceeCCCC--ccceecC-CcccCcch
Q 001708 654 YPTSVLETGHDILF-FWVARMVMLGIKLGGEVPFTKV-YLHPMIRDAHG--RKMSKSL-GNVIDPLE 715 (1022)
Q Consensus 654 ~P~dl~~~G~Dil~-fW~a~m~~~~~~l~~~~Pfk~V-~~Hg~v~D~~G--rKMSKSl-GNvIdP~d 715 (1022)
|.+|+...|.||.. +=++|-++-.+ |..| +.+ +.|.++...+| .|||||. +|.|...|
T Consensus 174 l~adivpvG~DQ~qh~eLaRdia~~~---g~~~-kpvil~~~~LpGL~gg~~KMSKS~p~naI~L~D 236 (682)
T PTZ00348 174 LKADICQLGLDQRKVNMLAREYCDLI---GRKL-KPVILSHHMLAGLKQGQAKMSKSDPDSAIFMED 236 (682)
T ss_pred cCCCEEEeCccHHHHHHHHHHHHHHh---CCCC-CceecccccCcCCCCCCCcCCCCCCCCeecccC
Confidence 45677778999953 34455544322 3222 223 45677766653 6999999 68887654
No 147
>cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. These enzymes attach Tyr or Trp, respectively, to the appropriate tRNA. These class I enzymes are homodimers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=66.44 E-value=5.3 Score=44.75 Aligned_cols=34 Identities=29% Similarity=0.498 Sum_probs=24.4
Q ss_pred CCC-CCCcchhHHHHHHHHHHHHHHhCCCeeeeeccCCc
Q 001708 186 VTG-ALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDH 223 (1022)
Q Consensus 186 ~nG-~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG~D~ 223 (1022)
||| .|||||.+. -..+.++++ .|+++.+..|=.|
T Consensus 8 PTg~~lHlGh~~~---l~~~~~lq~-~g~~~~~~I~d~~ 42 (273)
T cd00395 8 PTADSLHIGHLIG---LLTFRRFQH-AGHRPIFLIGGQT 42 (273)
T ss_pred CCCCCccHHHHHH---HHHHHHHHH-CCCCEEEEEecCc
Confidence 689 799999877 334556655 6899888777333
No 148
>PF05746 DALR_1: DALR anticodon binding domain; InterPro: IPR008909 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This all alpha helical domain is the anticodon binding domain of Arginyl tRNA synthetase. This domain is known as the DALR domain after characteristic conserved amino acids [].; GO: 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1F7V_A 1F7U_A 1BS2_A 1IQ0_A.
Probab=66.13 E-value=29 Score=33.15 Aligned_cols=81 Identities=16% Similarity=0.169 Sum_probs=55.1
Q ss_pred ChhhHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHhhhhHHHHHhhcccccCCCcccHHHHHHHHHHHHHHHHHHH
Q 001708 820 PFSCKWILSVLNKAISRTASSLNSYEFSDAASTVYSWWQYQFCDVFIEAIKPYFAGDNPAFASERSAAQHVLWVCLETGL 899 (1022)
Q Consensus 820 ~~~D~wil~~L~~~~~~v~~a~e~~~f~~a~~~i~~f~~~~l~~~Yle~~K~~l~~~~~~~~~~r~~a~~~L~~~L~~~l 899 (1022)
...++-++..+..+...+..+++.++++.+++.++++. ..++.+| +.+ +.+..+++.....|.........++..++
T Consensus 32 ~~~e~~L~~~l~~~~~~l~~a~~~~~p~~l~~yL~~La-~~f~~fy-~~~-~I~~~~~~~~~~~RL~Ll~~v~~vl~~~l 108 (119)
T PF05746_consen 32 EEEERELLKQLARFPDVLEKAAKDLEPHKLCDYLYELA-QAFNSFY-DNV-RILDEDEEIRKNNRLALLKAVRQVLKNGL 108 (119)
T ss_dssp SHHHHHHHHHHCTHHHHHHHHHHHT-CHHHHHHHHHHH-HHHHHHH-HHS--STTSTTCHH-HHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-HHHHHHH-hhc-cccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788999999999999999999999999999996 6677766 433 33433333200245555555566677777
Q ss_pred HHHh
Q 001708 900 RLLH 903 (1022)
Q Consensus 900 ~LL~ 903 (1022)
.||.
T Consensus 109 ~llg 112 (119)
T PF05746_consen 109 DLLG 112 (119)
T ss_dssp HHTT
T ss_pred HHcC
Confidence 7663
No 149
>PLN03233 putative glutamate-tRNA ligase; Provisional
Probab=65.55 E-value=14 Score=44.89 Aligned_cols=78 Identities=18% Similarity=0.130 Sum_probs=50.2
Q ss_pred EEeccceeCCCCccceecCCcccCcchhhcc------ccchhHHHhhhcCCCChHHHHHHHhcccCCCCCCCCCCCchHH
Q 001708 689 VYLHPMIRDAHGRKMSKSLGNVIDPLEVING------ISLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDAL 762 (1022)
Q Consensus 689 V~~Hg~v~D~~GrKMSKSlGNvIdP~dvI~g------~~l~~l~~~l~~~nl~~~e~~~a~~~~~~~~~~~i~~~GaDaL 762 (1022)
.+.|-..++..|.||||++..-.-=.-.++| -|+.+|+.+ .|-++|+
T Consensus 233 ~~~~f~rln~~~~kLSKR~l~~lV~~g~v~GWDDPRlpTi~~lrrr---------------------------G~~peAi 285 (523)
T PLN03233 233 RIHAFARMNFMNTVLSKRKLTWFVDNGHVTGWDDARFPTIRGISRR---------------------------GIDIDAL 285 (523)
T ss_pred eeeeeEEECCCCCcccccCchhhhccCcccCccCCchHhHHHHHHC---------------------------CCCHHHH
Confidence 3477777889999999997321100000011 123333333 5779999
Q ss_pred HHHHHhccCCCcccccchhhhHHH-HHHHHHH
Q 001708 763 RFALVSYTAQSDKINLDIQRVVGY-RQWCNKL 793 (1022)
Q Consensus 763 R~~L~~~~~~~~Dinf~~~~~~~~-r~f~nkl 793 (1022)
|=|++..+....|..++++.+... |+.++..
T Consensus 286 ~~f~~~~G~s~~~~~i~~~~l~~~nR~~ld~~ 317 (523)
T PLN03233 286 KMFMCSQGASRRVVNLDWAKFWAENKKEIDKR 317 (523)
T ss_pred HHHHHHhCCCCCCceecHHHHHHHHHHHhccc
Confidence 999998888778999999888763 4455543
No 150
>PRK12410 glutamylglutaminyl-tRNA synthetase; Provisional
Probab=65.44 E-value=15 Score=43.94 Aligned_cols=22 Identities=32% Similarity=0.389 Sum_probs=18.3
Q ss_pred EEEeccceeCCCCccceecCCc
Q 001708 688 KVYLHPMIRDAHGRKMSKSLGN 709 (1022)
Q Consensus 688 ~V~~Hg~v~D~~GrKMSKSlGN 709 (1022)
...-++++++.+|+||||..|.
T Consensus 221 ~f~Hlpli~~~~g~KLSKR~~~ 242 (433)
T PRK12410 221 TYAHLPIILNEEGKKMSKRDNA 242 (433)
T ss_pred eEEEeeeeeCCCCCeeecccCh
Confidence 4455588999999999999884
No 151
>PRK13354 tyrosyl-tRNA synthetase; Provisional
Probab=62.90 E-value=16 Score=43.43 Aligned_cols=44 Identities=23% Similarity=0.328 Sum_probs=29.1
Q ss_pred CcEEEECCCCCCCC-CCCcchhHHHHHHHHHHHHHHhCCCeeeeeccCCc
Q 001708 175 PSFVIVLPPPNVTG-ALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDH 223 (1022)
Q Consensus 175 ~~f~i~~pPPy~nG-~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG~D~ 223 (1022)
+++.+..| --||| +|||||+.... .+.+++ ..|+++.++.|=-|
T Consensus 32 ~~~~iy~G-~dPT~~sLHlGhlv~l~---~l~~lq-~~G~~~~~ligd~t 76 (410)
T PRK13354 32 KPLTLYLG-FDPTAPSLHIGHLVPLM---KLKRFQ-DAGHRPVILIGGFT 76 (410)
T ss_pred CCcEEEEc-ccCCCCCcchhhHHHHH---HHHHHH-HcCCeEEEEEcccc
Confidence 44566665 35798 59999955522 244444 47999988887555
No 152
>cd09287 GluRS_non_core catalytic core domain of non-discriminating glutamyl-tRNA synthetase. Non-discriminating Glutamyl-tRNA synthetase (GluRS) cataytic core domain. These enzymes attach Glu to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=61.79 E-value=20 Score=39.49 Aligned_cols=30 Identities=7% Similarity=0.153 Sum_probs=22.2
Q ss_pred CCCchHHHHHHHhccCCCcccccchhhhHH
Q 001708 756 ECGTDALRFALVSYTAQSDKINLDIQRVVG 785 (1022)
Q Consensus 756 ~~GaDaLR~~L~~~~~~~~Dinf~~~~~~~ 785 (1022)
.+-++|++-++...+....+..++++.+..
T Consensus 199 G~~p~ai~~~~~~lG~s~~~~~~~~~~l~~ 228 (240)
T cd09287 199 GIRPEAIRDFIIEVGVKQTDATISWENLYA 228 (240)
T ss_pred CCCHHHHHHHHHHhCCCCCCCccCHHHHHH
Confidence 466889998888777666677777776654
No 153
>PRK14895 gltX glutamyl-tRNA synthetase; Provisional
Probab=61.44 E-value=16 Score=44.44 Aligned_cols=49 Identities=33% Similarity=0.436 Sum_probs=32.7
Q ss_pred ccccccccchHHHHHHHHHhhhcCCCCceEEEeccceeCCCCccceecCCcc
Q 001708 659 LETGHDILFFWVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGNV 710 (1022)
Q Consensus 659 ~~~G~Dil~fW~a~m~~~~~~l~~~~Pfk~V~~Hg~v~D~~GrKMSKSlGNv 710 (1022)
.+-|.|++. ...+.+.+.-++.-..| ....+++|++.+|+||||..|.+
T Consensus 200 VIRG~d~~~-~t~~q~~l~~aLG~~~p--~~~H~plv~~~~g~KLSKR~g~~ 248 (513)
T PRK14895 200 IIRGDDHLT-NAARQLAIYQAFGYAVP--SMTHIPLIHGADGAKLSKRHGAL 248 (513)
T ss_pred EEECchHhh-hHHHHHHHHHHcCCCCC--eEEEEEeEEcCCCCccccccCch
Confidence 335666543 34444444444443444 67777999999999999999875
No 154
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=57.84 E-value=14 Score=43.55 Aligned_cols=41 Identities=22% Similarity=0.408 Sum_probs=27.2
Q ss_pred cEEEECCCCCCCC-CCCcchhHHHHHHHHHHHHHHhCCCeeeeeccCCccC
Q 001708 176 SFVIVLPPPNVTG-ALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAG 225 (1022)
Q Consensus 176 ~f~i~~pPPy~nG-~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG~D~~G 225 (1022)
-|+-.+ ||| +|||||..... .+.|+ ...|++|..+.| |-||
T Consensus 35 ~Y~GfD----PTa~slHlGhlv~l~---kL~~f-Q~aGh~~ivLig-d~ta 76 (401)
T COG0162 35 VYIGFD----PTAPSLHLGHLVPLM---KLRRF-QDAGHKPIVLIG-DATA 76 (401)
T ss_pred EEEeeC----CCCCccchhhHHHHH---HHHHH-HHCCCeEEEEec-ccce
Confidence 344455 499 89999987532 23344 457999999887 3444
No 155
>PF01927 Mut7-C: Mut7-C RNAse domain; InterPro: IPR002782 This prokaryotic family of proteins have no known function. The proteins contain four conserved cysteines that may be involved in metal binding or disulphide bridges.
Probab=57.74 E-value=7.1 Score=39.53 Aligned_cols=23 Identities=35% Similarity=0.842 Sum_probs=19.7
Q ss_pred HHHHHHhCCCeeeeeccCCccCh
Q 001708 204 IIRWRRMSGYNALWVPGMDHAGI 226 (1022)
Q Consensus 204 i~Ry~rm~G~~Vl~~pG~D~~Gl 226 (1022)
++||.|+.||+|.+..+.+..-|
T Consensus 12 Lar~LR~lG~Dt~~~~~~~D~~i 34 (147)
T PF01927_consen 12 LARWLRLLGYDTLYSRDIDDDEI 34 (147)
T ss_pred HHHHHHHCCCcEEEeCCCChHHH
Confidence 69999999999999998766544
No 156
>PRK12284 tryptophanyl-tRNA synthetase; Reviewed
Probab=56.92 E-value=21 Score=42.47 Aligned_cols=97 Identities=15% Similarity=0.098 Sum_probs=53.6
Q ss_pred CCCCCCcchhHHHHHHHHHHHHHHhCCCeeeeeccCCccChhHHHHHHHHHHHHhCCCccccChHHHHHHHHHHHHHHHH
Q 001708 186 VTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWKWKDEYGG 265 (1022)
Q Consensus 186 ~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG~D~~Glp~q~~vEk~l~~~~~~~~~~~g~e~f~~~~~~~~~~~~~ 265 (1022)
|||.|||||.++.+-. .++.+...|+++.|... |-|-+- +. ...++..+ . ..
T Consensus 11 PTG~lHLGNylGaik~--~v~lq~q~~~~~~~~IA-DlHAlT---------------~~--~dp~~lr~----~----~~ 62 (431)
T PRK12284 11 TTGTPHLGNYAGAIRP--AIAASRQPGVESFYFLA-DYHALI---------------KC--DDPARIQR----S----TL 62 (431)
T ss_pred CCCcchHHHHHHHHHH--HHHHHHhCCCcEEEEee-chhhcc---------------CC--CCHHHHHH----H----HH
Confidence 7999999997765432 33344445888766544 444331 00 11222222 2 22
Q ss_pred HHHHHHHHhccccccCCccccCC-hhhHHHHHHHHHHHHHcCcEEEc
Q 001708 266 TILRQQRRLGASLDWSRECFTMD-EKRSKAVTEAFVRLYKEGLIYRD 311 (1022)
Q Consensus 266 ~i~~ql~rlG~s~DW~r~~~T~d-~~~~~~v~~~F~~L~ekGlIyr~ 311 (1022)
.+...+...|+..+=...|+-.| |.+ ....|++..+--.|.+-|-
T Consensus 63 e~aa~~LA~GlDPek~~if~QSdvpeh-~EL~wiL~~it~~g~L~Rm 108 (431)
T PRK12284 63 EIAATWLAAGLDPERVTFYRQSDIPEI-PELTWLLTCVAGKGLLNRA 108 (431)
T ss_pred HHHHHHHHhCCCccceEEEECCcchhH-HHHHHHHHhhhhHHHHHhh
Confidence 34566777886655333444444 444 4557777777777776664
No 157
>TIGR00234 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples.
Probab=56.23 E-value=9.6 Score=44.71 Aligned_cols=44 Identities=18% Similarity=0.381 Sum_probs=28.8
Q ss_pred EEEECCCCCCCC-CCCcchhHHHHHHHHHHHHHHhCCCeeeeeccCCccCh
Q 001708 177 FVIVLPPPNVTG-ALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGI 226 (1022)
Q Consensus 177 f~i~~pPPy~nG-~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG~D~~Gl 226 (1022)
+.+..| --||| .|||||.+.. -.+.|+++ .|++|.+..| |-||+
T Consensus 31 ~~vy~G-~dPTg~~lHlGh~v~l---~~l~~lq~-~G~~~~ilig-d~ta~ 75 (377)
T TIGR00234 31 IKLYVG-FDPTAPSLHLGHLVPL---LKLRDFQQ-AGHEVIVLLG-DATAL 75 (377)
T ss_pred CEEEEe-eCCCCCCccHHHHHHH---HHHHHHHH-CCCcEEEEEe-ccchh
Confidence 444444 24699 8999997752 23556666 6999988876 44443
No 158
>cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase. Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. TrpRS is a homodimer which attaches Tyr to the appropriate tRNA. TrpRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding
Probab=55.84 E-value=8.1 Score=43.43 Aligned_cols=36 Identities=25% Similarity=0.412 Sum_probs=24.1
Q ss_pred CCCCCCCcchhHHHHHHHHHHHHHHhCCCeeeeeccCCc
Q 001708 185 NVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDH 223 (1022)
Q Consensus 185 y~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG~D~ 223 (1022)
-|||.|||||.++.+.. +.+.+.. |+++.+.-+=+|
T Consensus 7 ~PTG~lHLG~~~~al~~--~~~lQ~a-g~~~~~~IaD~h 42 (280)
T cd00806 7 QPSGSLHLGHYLGAFRF--WVWLQEA-GYELFFFIADLH 42 (280)
T ss_pred CCCchhhHHHHHHHHHH--HHHHHhC-CCCEEEEecchH
Confidence 36999999998884432 3333433 888888776444
No 159
>KOG1149 consensus Glutamyl-tRNA synthetase (mitochondrial) [Translation, ribosomal structure and biogenesis]
Probab=55.55 E-value=63 Score=38.23 Aligned_cols=97 Identities=20% Similarity=0.163 Sum_probs=59.5
Q ss_pred ECCCCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeeeeeccCCccChhHHHHHHHHHHHHhCCCccccChHHHHHHHHHH
Q 001708 180 VLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWKW 259 (1022)
Q Consensus 180 ~~pPPy~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG~D~~Glp~q~~vEk~l~~~~~~~~~~~g~e~f~~~~~~~ 259 (1022)
+-=-|-|||.||+|-++|...-=+++|- ..|.=++.+=-+|-.- .--|
T Consensus 36 vRFAPSPTGfLHlGgLRTALfNYLfArk--~gGkFiLRiEDTDq~R-------------------~v~g----------- 83 (524)
T KOG1149|consen 36 VRFAPSPTGFLHLGGLRTALFNYLFARK--KGGKFILRIEDTDQKR-------------------LIRG----------- 83 (524)
T ss_pred EeecCCCCcceehhhHHHHHHHHHHHHh--cCCeEEEEeccccccc-------------------cccc-----------
Confidence 3335889999999999988877777764 4788888877777421 1011
Q ss_pred HHHHHHHHHHHHHHhccccccCCccc--cCChhh----HHHHHHHHHHHHHcCcEEEcc
Q 001708 260 KDEYGGTILRQQRRLGASLDWSRECF--TMDEKR----SKAVTEAFVRLYKEGLIYRDL 312 (1022)
Q Consensus 260 ~~~~~~~i~~ql~rlG~s~DW~r~~~--T~d~~~----~~~v~~~F~~L~ekGlIyr~~ 312 (1022)
....|.+.|+-+|+..|=. +.+ -.-|.- -+.-...-.+|.+.|..||..
T Consensus 84 ---s~e~i~~~L~w~nl~~DEg-P~~gG~~GPY~QS~R~eiY~kyae~Ll~sG~AYrCF 138 (524)
T KOG1149|consen 84 ---SEEAIYEDLKWANLDWDEG-PGVGGPFGPYEQSERLEIYKKYAEKLLESGHAYRCF 138 (524)
T ss_pred ---hHHHHHHHHHhcCCCcccC-CCcCCCCCchhhHHHHHHHHHHHHHHHhcCCeeEec
Confidence 1256777888888666521 111 111211 122233445788999999864
No 160
>PRK08560 tyrosyl-tRNA synthetase; Validated
Probab=54.91 E-value=11 Score=43.54 Aligned_cols=43 Identities=19% Similarity=0.277 Sum_probs=27.2
Q ss_pred cEEEECCCCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeeeeeccCCc
Q 001708 176 SFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDH 223 (1022)
Q Consensus 176 ~f~i~~pPPy~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG~D~ 223 (1022)
++.+.+| =-|||.+||||... +.. +.++++. |+++.+..|=.|
T Consensus 30 ~~~v~~G-~~PTG~lHLG~~~~-~~~--~~~lq~~-g~~~~i~IaD~h 72 (329)
T PRK08560 30 EPKAYIG-FEPSGKIHLGHLLT-MNK--LADLQKA-GFKVTVLLADWH 72 (329)
T ss_pred CCEEEEc-cCCCCcchhhhhHH-HHH--HHHHHHC-CCeEEEEEccch
Confidence 4444554 35689999999653 322 6666664 888776666443
No 161
>PRK12558 glutamyl-tRNA synthetase; Provisional
Probab=52.42 E-value=34 Score=41.00 Aligned_cols=30 Identities=30% Similarity=0.482 Sum_probs=22.3
Q ss_pred hhhcCCCCceEEEeccceeCCCCccceecCCc
Q 001708 678 IKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGN 709 (1022)
Q Consensus 678 ~~l~~~~Pfk~V~~Hg~v~D~~GrKMSKSlGN 709 (1022)
-+|.-..| ...-+++|++.+|+||||..|.
T Consensus 218 ~alg~~~P--~f~H~pli~~~~g~KLSKR~g~ 247 (445)
T PRK12558 218 EALGAKPP--VFAHLSLLTGADGKGLSKRLGG 247 (445)
T ss_pred HHhCCCCC--eEEEcccccCCCcccccccCCC
Confidence 33433445 5666799999999999999875
No 162
>PTZ00402 glutamyl-tRNA synthetase; Provisional
Probab=48.87 E-value=39 Score=41.93 Aligned_cols=37 Identities=11% Similarity=0.023 Sum_probs=27.8
Q ss_pred CCCchHHHHHHHhccCCCcccccchhhhHHH-HHHHHH
Q 001708 756 ECGTDALRFALVSYTAQSDKINLDIQRVVGY-RQWCNK 792 (1022)
Q Consensus 756 ~~GaDaLR~~L~~~~~~~~Dinf~~~~~~~~-r~f~nk 792 (1022)
.+-++++|=++...+....+..||++.+... |+.++.
T Consensus 321 G~~peai~~f~~~~Gvsk~~~~~d~~~L~~~nr~~l~~ 358 (601)
T PTZ00402 321 GLKMEALRQFVQEQGMSKTVNFMEWSKLWYFNTQILDP 358 (601)
T ss_pred CCCHHHHHHHHHHhCCCCCCcccCHHHHHHHHHHHHhh
Confidence 4678999988887777778999999988763 334443
No 163
>PRK05912 tyrosyl-tRNA synthetase; Validated
Probab=48.19 E-value=15 Score=43.50 Aligned_cols=40 Identities=25% Similarity=0.405 Sum_probs=27.2
Q ss_pred cEEEECCCCCCCC-CCCcchhHHHHHHHHHHHHHHhCCCeeeeecc
Q 001708 176 SFVIVLPPPNVTG-ALHIGHALTTAIQDTIIRWRRMSGYNALWVPG 220 (1022)
Q Consensus 176 ~f~i~~pPPy~nG-~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG 220 (1022)
++.+..| --||| +|||||.+. -..+.++++ .|+++.+..|
T Consensus 33 ~~~vy~G-~dPTg~slHlGhlv~---l~~l~~lQ~-~G~~~~~lig 73 (408)
T PRK05912 33 PLRIYLG-FDPTAPSLHLGHLVP---LLKLRRFQD-AGHKPIALIG 73 (408)
T ss_pred CCEEEEe-ecCCCCCccHHhHHH---HHHHHHHHH-CCCcEEEEEc
Confidence 3555555 35699 599999874 245556655 6888888776
No 164
>TIGR00463 gltX_arch glutamyl-tRNA synthetase, archaeal and eukaryotic family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the eukaryotic cytosolic and archaeal forms of the enzyme. In some eukaryotes, the glutamyl-tRNA synthetase is part of a longer, multifunctional aminoacyl-tRNA ligase. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu).
Probab=47.71 E-value=39 Score=41.64 Aligned_cols=77 Identities=16% Similarity=0.209 Sum_probs=50.8
Q ss_pred EEEeccceeCCCCccceecCCc-ccCcchhhcc------ccchhHHHhhhcCCCChHHHHHHHhcccCCCCCCCCCCCch
Q 001708 688 KVYLHPMIRDAHGRKMSKSLGN-VIDPLEVING------ISLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTD 760 (1022)
Q Consensus 688 ~V~~Hg~v~D~~GrKMSKSlGN-vIdP~dvI~g------~~l~~l~~~l~~~nl~~~e~~~a~~~~~~~~~~~i~~~GaD 760 (1022)
.+..++++++..|+|+||+..- .+.- -.+.| .|+.+|+.. .+-++
T Consensus 315 ~~~h~~~l~~~~~~kLskk~k~~~l~~-g~~~gWdDPr~~ti~~lrrr---------------------------G~~pe 366 (560)
T TIGR00463 315 EFIHWGRLKINDVRTLSTSSKLKGIVR-GDYSGWDDPRLPTLRAVRRR---------------------------GITPE 366 (560)
T ss_pred eEEEEcceecCCCcEecchhhhhhhhc-cCccCcCCccHHHHHHHHHC---------------------------CCCHH
Confidence 7888899999999999998731 1110 01111 123333332 46789
Q ss_pred HHHHHHHhccCCCcccccchhhhHHH-HHHHHH
Q 001708 761 ALRFALVSYTAQSDKINLDIQRVVGY-RQWCNK 792 (1022)
Q Consensus 761 aLR~~L~~~~~~~~Dinf~~~~~~~~-r~f~nk 792 (1022)
|+|-|++..+....|+.++++.+... |+.++.
T Consensus 367 Ai~~f~~~~G~s~~~~~i~~~~l~~~nr~~id~ 399 (560)
T TIGR00463 367 AIRNFMLSIGVKRNDVNLSWKNIYAFNKKIIDP 399 (560)
T ss_pred HHHHHHHHhCCCCCCceeeHHHHHHHHHHHhCc
Confidence 99999998887778999999888653 444443
No 165
>PLN02859 glutamine-tRNA ligase
Probab=46.86 E-value=38 Score=43.22 Aligned_cols=73 Identities=16% Similarity=0.142 Sum_probs=48.1
Q ss_pred CCCceEEEeccceeCCCCccceecCCcccCcchhhcc------ccchhHHHhhhcCCCChHHHHHHHhcccCCCCCCCCC
Q 001708 683 EVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVING------ISLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPE 756 (1022)
Q Consensus 683 ~~Pfk~V~~Hg~v~D~~GrKMSKSlGNvIdP~dvI~g------~~l~~l~~~l~~~nl~~~e~~~a~~~~~~~~~~~i~~ 756 (1022)
..| .+.|=-.++.+|.||||+++...-=.-+++| .|+.+|+.+ .
T Consensus 483 ~~P---~~~~f~rLn~~~t~LSKRkl~~lV~~g~V~GWDDPRl~Tl~glRrr---------------------------G 532 (788)
T PLN02859 483 YQP---YVWEYSRLNVTNTVMSKRKLNRLVTEKYVDGWDDPRLLTLAGLRRR---------------------------G 532 (788)
T ss_pred CCC---cEEeeeeECCCCCcccCcCchhccccCcccCCCCCcchhHHHHHHC---------------------------C
Confidence 456 4444347789999999999875422223333 344455444 5
Q ss_pred CCchHHHHHHHhccCCCccc-ccchhhhHH
Q 001708 757 CGTDALRFALVSYTAQSDKI-NLDIQRVVG 785 (1022)
Q Consensus 757 ~GaDaLR~~L~~~~~~~~Di-nf~~~~~~~ 785 (1022)
|-++|+|=|++..+....|. .++++.++.
T Consensus 533 ~~PeAi~nFi~~lG~s~~~~e~i~~~~Le~ 562 (788)
T PLN02859 533 VTPTAINAFCRGIGITRSDNSLIRMDRLEH 562 (788)
T ss_pred CCHHHHHHHHHHhCCCCCCCceecHHHHHh
Confidence 77999999988877655566 688877744
No 166
>PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2JAN_A 3P0J_B 3P0I_B 3P0H_B 1YID_C 2A4M_C 1YIA_C 1YI8_C 2EL7_A 3PRH_A ....
Probab=46.71 E-value=16 Score=41.06 Aligned_cols=43 Identities=23% Similarity=0.451 Sum_probs=27.4
Q ss_pred cEEEECCCCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeeeeeccCCc
Q 001708 176 SFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDH 223 (1022)
Q Consensus 176 ~f~i~~pPPy~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG~D~ 223 (1022)
++.+.+| =-|||.|||||..... .+.+.++ .|++|.+..|=+|
T Consensus 5 ~~~~y~G-~~PTg~lHlG~l~~~~---~~~~lq~-~g~~~~i~iaD~~ 47 (292)
T PF00579_consen 5 PFRVYTG-IDPTGDLHLGHLVPIM---KLIWLQK-AGFKVIILIADLH 47 (292)
T ss_dssp SEEEEEE-EESSSS-BHHHHHHHH---HHHHHHH-TTSEEEEEEEHHH
T ss_pred CcEEEEe-ECCCCcccchHHHHHH---HHHHHHh-cCCccceEecchh
Confidence 3444444 2469999999877642 3444455 8999998887443
No 167
>PLN02886 aminoacyl-tRNA ligase
Probab=46.60 E-value=17 Score=42.68 Aligned_cols=60 Identities=25% Similarity=0.304 Sum_probs=31.6
Q ss_pred CCcCcccccccccc-hHHHHHHHHHhhh-cC---------------CCCceEEEe--ccceeCCC-C-ccceecCC---c
Q 001708 654 YPTSVLETGHDILF-FWVARMVMLGIKL-GG---------------EVPFTKVYL--HPMIRDAH-G-RKMSKSLG---N 709 (1022)
Q Consensus 654 ~P~dl~~~G~Dil~-fW~a~m~~~~~~l-~~---------------~~Pfk~V~~--Hg~v~D~~-G-rKMSKSlG---N 709 (1022)
|-+++...|.||.. .=++|-++..+.- .+ .+| ..++. +..|.+.. | .|||||.. |
T Consensus 183 ~~a~~VPVG~DQ~qH~eLtRdiA~rfN~~y~~~~~~~~~~~~~~~f~~P-~~l~~~~~~ri~~L~~g~~KMSKS~p~~~s 261 (389)
T PLN02886 183 YQADLVPVGEDQKQHLELTRDIAERVNNLYGGRKWKKLGGRGGSVFKVP-EALIPPAGARVMSLTDGTSKMSKSAPSDQS 261 (389)
T ss_pred cCCCeEEEccchHHHHHHHHHHHHHHhhhccccccccccccCCceecCC-eeccCcccceeeeCCCCCCcCCCCCCCCCC
Confidence 45667777999963 3445555433221 11 122 22321 23455553 3 69999995 4
Q ss_pred ccCcc
Q 001708 710 VIDPL 714 (1022)
Q Consensus 710 vIdP~ 714 (1022)
.|...
T Consensus 262 ~I~L~ 266 (389)
T PLN02886 262 RINLL 266 (389)
T ss_pred eEEec
Confidence 66543
No 168
>TIGR00233 trpS tryptophanyl-tRNA synthetase. This model represents tryptophanyl-tRNA synthetase. Some members of the family have a pfam00458 domain amino-terminal to the region described by this model.
Probab=45.00 E-value=13 Score=42.73 Aligned_cols=41 Identities=20% Similarity=0.334 Sum_probs=27.2
Q ss_pred EEECCCCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeeeeeccCCc
Q 001708 178 VIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDH 223 (1022)
Q Consensus 178 ~i~~pPPy~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG~D~ 223 (1022)
.+.+| =-|||.|||||.++.+. .++....|++|.+..+=+|
T Consensus 4 ~v~~G-~~PTG~~HlG~~l~~~~----~~~~~q~~~~~~i~IaD~h 44 (328)
T TIGR00233 4 RVLTG-IQPSGKMHLGHYLGAIQ----TKWLQQFGVELFICIADLH 44 (328)
T ss_pred EEEEe-eCCCcHhHHHHHHHHHH----HHHHHhCCCCEEEEeecch
Confidence 34443 35789999999887653 2333357888887776555
No 169
>KOG4426 consensus Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=44.72 E-value=1.8e+02 Score=34.45 Aligned_cols=47 Identities=26% Similarity=0.451 Sum_probs=42.2
Q ss_pred CCcEEEECCCCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeeeeecc
Q 001708 174 KPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPG 220 (1022)
Q Consensus 174 k~~f~i~~pPPy~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG 220 (1022)
.++-++...-||.--.+|+||.+..+|.|.++|-....|+.|+.+--
T Consensus 187 ~KrvlVDFSSPNIAKeMHVGHLRSTIIGdsl~RllE~~~~dVlR~NH 233 (656)
T KOG4426|consen 187 VKRVLVDFSSPNIAKEMHVGHLRSTIIGDSLCRLLEFSGVDVLRRNH 233 (656)
T ss_pred eeeEEEecCCCcHHHHhhhhhhhhhhHhHHHHHHHHhcCcceEeecc
Confidence 35677778899999999999999999999999999999999998643
No 170
>KOG2145 consensus Cytoplasmic tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=43.62 E-value=24 Score=39.34 Aligned_cols=85 Identities=21% Similarity=0.298 Sum_probs=48.9
Q ss_pred CCCCcEEEECCCCCCCCCCCcchhHH----HHHHHHHHHHHHhCCCeeeeec-cCCccChhHHHHHHHHHHHHhCCCccc
Q 001708 172 SSKPSFVIVLPPPNVTGALHIGHALT----TAIQDTIIRWRRMSGYNALWVP-GMDHAGIATQVVVEKKLMRERKLTRHD 246 (1022)
Q Consensus 172 ~~k~~f~i~~pPPy~nG~LHiGHal~----~~i~Dii~Ry~rm~G~~Vl~~p-G~D~~Glp~q~~vEk~l~~~~~~~~~~ 246 (1022)
..+++|++.+|-=--+|.+|+||... +-+||+ ++|..+. =+|. ||-||+. ++
T Consensus 81 eq~kpFyLYTGRGpSS~smHlGHliPFiftKwlQe~---------F~vpLVIqlTDD---------EKflwK~--l~--- 137 (397)
T KOG2145|consen 81 EQGKPFYLYTGRGPSSESMHLGHLIPFIFTKWLQDV---------FDVPLVIQLTDD---------EKFLWKD--LT--- 137 (397)
T ss_pred HcCCceEEEeCCCCCccccccccchhHHHHHHHHHH---------hCCceEEEeccc---------HHHHHhh--Cc---
Confidence 34567999998777799999999654 444554 4454433 3443 6777653 22
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCccccCChhh
Q 001708 247 IGREQFVSEVWKWKDEYGGTILRQQRRLGASLDWSRECFTMDEKR 291 (1022)
Q Consensus 247 ~g~e~f~~~~~~~~~~~~~~i~~ql~rlG~s~DW~r~~~T~d~~~ 291 (1022)
++.|..++.++.+-| -.+| +|=...|.-+|-+|
T Consensus 138 ------~eda~~~arENaKDI----ia~G--FDp~kTfIFsn~~y 170 (397)
T KOG2145|consen 138 ------LEDAKKYARENAKDI----IAVG--FDPKKTFIFSNLDY 170 (397)
T ss_pred ------HHHHHHHHHhcccce----EEec--cCCcceEEEechhh
Confidence 234555665554433 2334 44345554444444
No 171
>PRK05347 glutaminyl-tRNA synthetase; Provisional
Probab=43.12 E-value=64 Score=39.75 Aligned_cols=31 Identities=6% Similarity=0.038 Sum_probs=25.7
Q ss_pred CCCchHHHHHHHhccCCCcccccchhhhHHH
Q 001708 756 ECGTDALRFALVSYTAQSDKINLDIQRVVGY 786 (1022)
Q Consensus 756 ~~GaDaLR~~L~~~~~~~~Dinf~~~~~~~~ 786 (1022)
.|-++|||=|++..+....+..++++.+...
T Consensus 303 G~~PeAi~nf~~~lG~s~~~~~i~~~~L~~~ 333 (554)
T PRK05347 303 GYTPESIREFCERIGVTKQDSVIDMSMLESC 333 (554)
T ss_pred CCCHHHHHHHHHHhCCCCCCCeecHHHHHHH
Confidence 5779999999998887777888998887653
No 172
>TIGR00440 glnS glutaminyl-tRNA synthetase. This protein is a relatively rare aminoacyl-tRNA synthetase, found in the cytosolic compartment of eukaryotes, in E. coli and a number of other Gram-negative Bacteria, and in Deinococcus radiodurans. In contrast, the pathway to Gln-tRNA in mitochondria, Archaea, Gram-positive Bacteria, and a number of other lineages is by misacylation with Glu followed by transamidation to correct the aminoacylation to Gln. This enzyme is a class I tRNA synthetase (hit by the pfam model tRNA-synt_1c) and is quite closely related to glutamyl-tRNA synthetases.
Probab=41.65 E-value=43 Score=40.93 Aligned_cols=72 Identities=15% Similarity=0.198 Sum_probs=43.5
Q ss_pred CCceEEEeccceeCCCCccceecCCcccCcchhhcc------ccchhHHHhhhcCCCChHHHHHHHhcccCCCCCCCCCC
Q 001708 684 VPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEVING------ISLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPEC 757 (1022)
Q Consensus 684 ~Pfk~V~~Hg~v~D~~GrKMSKSlGNvIdP~dvI~g------~~l~~l~~~l~~~nl~~~e~~~a~~~~~~~~~~~i~~~ 757 (1022)
.|..--|.| ++.+|.||||+++...-=.-+++| .|+.+|+.+ .|
T Consensus 226 ~P~~~~F~r---ln~~~~kLSKRk~~~~V~~g~v~GWdDPRl~Ti~~lrrr---------------------------G~ 275 (522)
T TIGR00440 226 RPAQYEFSR---LNLEGTVLSKRKLAQLVDDKFVRGWDDPRMPTISGLRRR---------------------------GY 275 (522)
T ss_pred CCceEEEEE---ECCCCCCcccccchhccccCcccCCCCCccccHHHHHHC---------------------------CC
Confidence 364445555 678999999999764211111222 134444433 57
Q ss_pred CchHHHHHHHhccCCCcccccchhhhHH
Q 001708 758 GTDALRFALVSYTAQSDKINLDIQRVVG 785 (1022)
Q Consensus 758 GaDaLR~~L~~~~~~~~Dinf~~~~~~~ 785 (1022)
-++|||=|++..+....+...++..++.
T Consensus 276 ~PeAi~nfl~~lG~s~~~~~~e~~~l~~ 303 (522)
T TIGR00440 276 TPASIREFCNRIGVTKQDNNIEVVRLES 303 (522)
T ss_pred CHHHHHHHHHHhCCCCCCCceehhhHHH
Confidence 7899999988876554454556655544
No 173
>smart00836 DALR_1 DALR anticodon binding domain. This all alpha helical domain is the anticodon binding domain of Arginyl tRNA synthetase. This domain is known as the DALR domain after characteristic conserved amino acids PUBMED:10447505.
Probab=40.95 E-value=1.9e+02 Score=27.71 Aligned_cols=80 Identities=20% Similarity=0.212 Sum_probs=50.5
Q ss_pred hhhHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHhhhhHHHHHhhcccccCCCcccHHHHHHHHHHHHHHHHHHHH
Q 001708 821 FSCKWILSVLNKAISRTASSLNSYEFSDAASTVYSWWQYQFCDVFIEAIKPYFAGDNPAFASERSAAQHVLWVCLETGLR 900 (1022)
Q Consensus 821 ~~D~wil~~L~~~~~~v~~a~e~~~f~~a~~~i~~f~~~~l~~~Yle~~K~~l~~~~~~~~~~r~~a~~~L~~~L~~~l~ 900 (1022)
..++-++..+..+...+..++.+.+++.++..++++. ..+.++ ++.+ +.+..++.+....|......+..++..+++
T Consensus 36 ~~E~~L~~~i~~~~~~i~~~~~~~~~~~l~~~l~~L~-~~~~~f-y~~v-~V~~~~~~~~~~~RL~Ll~~~~~~l~~~~~ 112 (122)
T smart00836 36 PEELALLRLLARFPEVLEAAAETLEPHRLANYLYDLA-SAFHSF-YNKC-RVLGEENPELRAARLALLKAVRQVLANGLR 112 (122)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHH-HHHHHH-HccC-cccCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466677788888888889999999999999999984 444444 4544 333322232122344444455555666666
Q ss_pred HHh
Q 001708 901 LLH 903 (1022)
Q Consensus 901 LL~ 903 (1022)
+|.
T Consensus 113 llg 115 (122)
T smart00836 113 LLG 115 (122)
T ss_pred HcC
Confidence 664
No 174
>PLN02886 aminoacyl-tRNA ligase
Probab=40.14 E-value=29 Score=40.86 Aligned_cols=95 Identities=12% Similarity=0.124 Sum_probs=48.4
Q ss_pred CCCCCCCcchhHHHHHHHHHHHHHHhCCCeeeeeccCCccChhHHHHHHHHHHHHhCCCccccChHHHHHHHHHHHHHHH
Q 001708 185 NVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWKWKDEYG 264 (1022)
Q Consensus 185 y~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG~D~~Glp~q~~vEk~l~~~~~~~~~~~g~e~f~~~~~~~~~~~~ 264 (1022)
-|||.+||||.+..+ .-+++++. |+++.|..- |-|-+- .+. ..+++.+ +.
T Consensus 54 qPSG~lHLGnylGai--~~~v~lQ~--~~~~~~~IA-DlHAlt---------------~~~--~~~~lr~--------~~ 103 (389)
T PLN02886 54 QPTGSIHLGNYLGAI--KNWVALQE--TYDTFFCVV-DLHAIT---------------LPH--DPRELGK--------AT 103 (389)
T ss_pred CCCCccHHHHHHHHH--HHHHHHhc--cCCEEEEEe-cHHHhh---------------CCC--CHHHHHH--------HH
Confidence 358999999977654 23334443 777755443 333221 111 2222222 22
Q ss_pred HHHHHHHHHhccccccCCccccCC-hhhHHHHHHHHHHHHHcCcEEE
Q 001708 265 GTILRQQRRLGASLDWSRECFTMD-EKRSKAVTEAFVRLYKEGLIYR 310 (1022)
Q Consensus 265 ~~i~~ql~rlG~s~DW~r~~~T~d-~~~~~~v~~~F~~L~ekGlIyr 310 (1022)
..+...+..+|+..+=...|+-.| +.+ ....|++..+..-|.+.|
T Consensus 104 ~~~~a~~lA~GlDP~ks~if~QS~v~e~-~eL~wil~~~t~~g~L~R 149 (389)
T PLN02886 104 RSTAAIYLACGIDPSKASVFVQSHVPAH-AELMWLLSCSTPIGWLNK 149 (389)
T ss_pred HHHHHHHHHcCcCccceEEEEeCCCchh-HHHHHHHHhhCcHHHHHh
Confidence 345567888897766333344333 444 334555555444444433
No 175
>PRK00927 tryptophanyl-tRNA synthetase; Reviewed
Probab=39.68 E-value=19 Score=41.56 Aligned_cols=32 Identities=22% Similarity=0.432 Sum_probs=21.7
Q ss_pred CCCCCCCcchhHHHHHHHHHHHHHHhCCCeeeeecc
Q 001708 185 NVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPG 220 (1022)
Q Consensus 185 y~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG 220 (1022)
-|||.|||||.++.+.+ +++++. +++|.+..+
T Consensus 9 ~PTG~lHLG~~~g~~~~--~~~lQ~--~~~~~~~Ia 40 (333)
T PRK00927 9 QPTGKLHLGNYLGAIKN--WVELQD--EYECFFCIA 40 (333)
T ss_pred CCCccchHHhHHHHHHH--HHHHHh--cCCeEEEEe
Confidence 36999999998866533 445554 367766665
No 176
>PRK05710 glutamyl-Q tRNA(Asp) synthetase; Reviewed
Probab=37.32 E-value=33 Score=39.00 Aligned_cols=30 Identities=33% Similarity=0.517 Sum_probs=21.7
Q ss_pred hhcCCCCceEEEeccceeCCCCccceecCCcc
Q 001708 679 KLGGEVPFTKVYLHPMIRDAHGRKMSKSLGNV 710 (1022)
Q Consensus 679 ~l~~~~Pfk~V~~Hg~v~D~~GrKMSKSlGNv 710 (1022)
+|.-..| ...-|++++|.+|+||||+.|..
T Consensus 215 aLg~~~P--~y~H~pll~~~~g~kLSKr~~~~ 244 (299)
T PRK05710 215 LLGLPTP--RYLHLPLVLNADGQKLSKQNGAP 244 (299)
T ss_pred HcCCCCC--eEEEeecccCCCCCcccccCCcc
Confidence 3333456 44445899999999999998764
No 177
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=36.94 E-value=1.3e+02 Score=32.99 Aligned_cols=102 Identities=15% Similarity=0.180 Sum_probs=56.3
Q ss_pred CCCCCCCCcchhHHHHHHHHHHHHHHhCCCeeeeeccCCccChhHHHHHHHHHHHHhCCCccccChHHHHHHHHHHHHHH
Q 001708 184 PNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKLMRERKLTRHDIGREQFVSEVWKWKDEY 263 (1022)
Q Consensus 184 Py~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG~D~~Glp~q~~vEk~l~~~~~~~~~~~g~e~f~~~~~~~~~~~ 263 (1022)
++.+|.+++.+-.. -+.. +.+..+-.|-+|+...|-...+-... .+. + .-.|++|++.+.++..+|
T Consensus 33 i~~~G~l~~~~~~~-~~~~-~~~~~~~~~~kvl~sigg~~~~~~~~-~~~---------~--~~~r~~fi~~lv~~~~~~ 98 (253)
T cd06545 33 PDANGTLNANPVRS-ELNS-VVNAAHAHNVKILISLAGGSPPEFTA-ALN---------D--PAKRKALVDKIINYVVSY 98 (253)
T ss_pred ECCCCeEEecCcHH-HHHH-HHHHHHhCCCEEEEEEcCCCCCcchh-hhc---------C--HHHHHHHHHHHHHHHHHh
Confidence 45588888864211 1222 23344457888887665433321110 111 1 112556666555544332
Q ss_pred HHHHHHHHHHhccccccCCccccCChhhHHHHHHHHHHHHHcCcE
Q 001708 264 GGTILRQQRRLGASLDWSRECFTMDEKRSKAVTEAFVRLYKEGLI 308 (1022)
Q Consensus 264 ~~~i~~ql~rlG~s~DW~r~~~T~d~~~~~~v~~~F~~L~ekGlI 308 (1022)
. -=|+.+||+....+ ..+|..++.++-..|.+.|++
T Consensus 99 ~--------~DGIdiDwE~~~~~-~~~~~~fv~~Lr~~l~~~~~~ 134 (253)
T cd06545 99 N--------LDGIDVDLEGPDVT-FGDYLVFIRALYAALKKEGKL 134 (253)
T ss_pred C--------CCceeEEeeccCcc-HhHHHHHHHHHHHHHhhcCcE
Confidence 1 23889999876443 467888888888888776754
No 178
>PLN02381 valyl-tRNA synthetase
Probab=36.15 E-value=59 Score=43.42 Aligned_cols=17 Identities=29% Similarity=0.280 Sum_probs=12.0
Q ss_pred CCCCCCCCcchhHHHHH
Q 001708 184 PNVTGALHIGHALTTAI 200 (1022)
Q Consensus 184 Py~nG~LHiGHal~~~i 200 (1022)
.++.|-=|-|-+.....
T Consensus 169 l~~~G~D~~Glp~e~~v 185 (1066)
T PLN02381 169 LWVPGVDHAGIATQVVV 185 (1066)
T ss_pred cccCCCCCCcChHHHHH
Confidence 56678878788776554
No 179
>PTZ00437 glutaminyl-tRNA synthetase; Provisional
Probab=34.43 E-value=44 Score=41.18 Aligned_cols=72 Identities=17% Similarity=0.164 Sum_probs=49.6
Q ss_pred eCCCCccceecCCcccCcchhhcc------ccchhHHHhhhcCCCChHHHHHHHhcccCCCCCCCCCCCchHHHHHHHhc
Q 001708 696 RDAHGRKMSKSLGNVIDPLEVING------ISLEGLHKRLEEGNLDPKELEVAKKGQKADFPNGIPECGTDALRFALVSY 769 (1022)
Q Consensus 696 ~D~~GrKMSKSlGNvIdP~dvI~g------~~l~~l~~~l~~~nl~~~e~~~a~~~~~~~~~~~i~~~GaDaLR~~L~~~ 769 (1022)
+..+|.||||+++...-=.-+++| .|+.+|+.+ .|-++|||=|++..
T Consensus 280 ln~~~~~LSKRkl~~lV~~g~V~GWDDPRl~Ti~glrrr---------------------------G~~peAi~~f~~~~ 332 (574)
T PTZ00437 280 LNVTGSLLSKRKINVLVRKGIVRGFDDPRLLTLAGMRRR---------------------------GYTPAAINRFCELV 332 (574)
T ss_pred ecCCCceeeccchHHhcccCccCCCCCCcchhHHHHHHC---------------------------CCCHHHHHHHHHHh
Confidence 578999999999875322222333 234444444 57799999999888
Q ss_pred cCCCcccccchhhhHHH-HHHHHHHH
Q 001708 770 TAQSDKINLDIQRVVGY-RQWCNKLW 794 (1022)
Q Consensus 770 ~~~~~Dinf~~~~~~~~-r~f~nkl~ 794 (1022)
+....|..++++.++.. |+.++...
T Consensus 333 G~sk~~~~i~~~~Le~~nR~~ld~~a 358 (574)
T PTZ00437 333 GITRSMNVIQISMLENTLREDLDERC 358 (574)
T ss_pred CCCccceEeeHHHHHHHHHHHhcccC
Confidence 87778899999988764 55555543
No 180
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]
Probab=33.68 E-value=32 Score=41.44 Aligned_cols=27 Identities=41% Similarity=0.551 Sum_probs=24.3
Q ss_pred hhhHHHHHHHHHHHHHcCcEEEcceee
Q 001708 289 EKRSKAVTEAFVRLYKEGLIYRDLRLV 315 (1022)
Q Consensus 289 ~~~~~~v~~~F~~L~ekGlIyr~~~~V 315 (1022)
.-|...|.++|.-||.+|.|||+.+|-
T Consensus 523 rF~~acv~EAfeYLH~k~iIYRDLKPE 549 (732)
T KOG0614|consen 523 RFYVACVLEAFEYLHRKGIIYRDLKPE 549 (732)
T ss_pred hhhHHHHHHHHHHHHhcCceeccCChh
Confidence 457888999999999999999999884
No 181
>PF04918 DltD_M: DltD central region; InterPro: IPR007002 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the central region of DltD.; PDB: 3BMA_C.
Probab=32.25 E-value=35 Score=35.19 Aligned_cols=25 Identities=24% Similarity=0.481 Sum_probs=11.9
Q ss_pred CCCceecccccccceechHHHHHHHH
Q 001708 506 SNDVVEPMIKPQWYVNCNSMAMEALY 531 (1022)
Q Consensus 506 s~~~i~~~~~~QWFi~~~~l~~~al~ 531 (1022)
.|.-++++++||||.+-. +...+..
T Consensus 23 k~KK~V~iiSPQWF~k~G-~~~~aF~ 47 (163)
T PF04918_consen 23 KNKKAVFIISPQWFTKKG-VDPDAFQ 47 (163)
T ss_dssp TT-EEEEE--GGG--TT--S-HHHHH
T ss_pred cCCcEEEEECCcccCCCC-cCHHHHH
Confidence 366788999999999743 4444443
No 182
>PRK12556 tryptophanyl-tRNA synthetase; Provisional
Probab=31.81 E-value=39 Score=39.05 Aligned_cols=36 Identities=19% Similarity=0.202 Sum_probs=21.2
Q ss_pred CCCCCCcchhHHHHHHHHHHHHHHhCCCeeeeeccCCc
Q 001708 186 VTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDH 223 (1022)
Q Consensus 186 ~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG~D~ 223 (1022)
|||.|||||.++.+.. .++.+.-.|.++.+...=.|
T Consensus 12 PTG~~HLGnylga~k~--~~~lq~~~~~~~~~~IADlH 47 (332)
T PRK12556 12 PTGYPHLGNYIGAIKP--ALQMAKNYEGKALYFIADYH 47 (332)
T ss_pred CCCcchHHHHHHHHHH--HHHHHHhcCCeEEEEEechh
Confidence 5899999997764432 22233334666666555333
No 183
>TIGR03838 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthetase. This protein resembles a shortened glutamyl-tRNA ligase, but its purpose is to modify tRNA(Asp) at a queuosine position in the anticodon rather than to charge a tRNA with its cognate amino acid.
Probab=31.68 E-value=43 Score=37.56 Aligned_cols=29 Identities=34% Similarity=0.528 Sum_probs=21.2
Q ss_pred hcCCCCceEEEeccceeCCCCccceecCCcc
Q 001708 680 LGGEVPFTKVYLHPMIRDAHGRKMSKSLGNV 710 (1022)
Q Consensus 680 l~~~~Pfk~V~~Hg~v~D~~GrKMSKSlGNv 710 (1022)
|.-..| ...-|+++++.+|+|+||+.|-.
T Consensus 209 Lg~~~P--~y~H~pll~~~~g~kLSKR~~~~ 237 (272)
T TIGR03838 209 LGLPPP--RYLHLPLVVNADGEKLSKQNGAP 237 (272)
T ss_pred hCCCCC--eEEechhhhCCCCCeeeccCCcc
Confidence 333456 45556889999999999998653
No 184
>PLN02627 glutamyl-tRNA synthetase
Probab=31.65 E-value=1.1e+02 Score=37.76 Aligned_cols=33 Identities=24% Similarity=0.273 Sum_probs=23.5
Q ss_pred HHhhhcCCCCceEEEeccceeCCCCccceecCCcc
Q 001708 676 LGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGNV 710 (1022)
Q Consensus 676 ~~~~l~~~~Pfk~V~~Hg~v~D~~GrKMSKSlGNv 710 (1022)
+--+|.-..| ...-+++|++.+|+||||..|.+
T Consensus 269 ly~aLg~~~P--~f~Hlpli~~~~g~KLSKR~~~~ 301 (535)
T PLN02627 269 IYKALGFPMP--RFAHVSLILAPDRSKLSKRHGAT 301 (535)
T ss_pred HHHHcCCCCC--eEEEccceeCCCCCccccccCCc
Confidence 3334433456 56667999999999999998653
No 185
>COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=31.63 E-value=71 Score=38.70 Aligned_cols=25 Identities=24% Similarity=0.413 Sum_probs=20.1
Q ss_pred EEEeccceeCCCCccceecCCcccCc
Q 001708 688 KVYLHPMIRDAHGRKMSKSLGNVIDP 713 (1022)
Q Consensus 688 ~V~~Hg~v~D~~GrKMSKSlGNvIdP 713 (1022)
..+-++++++.+|+|||||.| .++.
T Consensus 236 ~~~H~~li~~~~g~kLSKr~~-~~~~ 260 (472)
T COG0008 236 VYAHLPLLLNEDGKKLSKRKG-AVSI 260 (472)
T ss_pred cEEEeeeeecCCCCeecCccC-cccc
Confidence 566679999999999999999 4433
No 186
>PRK12283 tryptophanyl-tRNA synthetase; Reviewed
Probab=28.01 E-value=38 Score=39.95 Aligned_cols=29 Identities=28% Similarity=0.659 Sum_probs=19.5
Q ss_pred CCCCCCcchhHHHHHHHHHHHHHHh-CCCeeeeec
Q 001708 186 VTGALHIGHALTTAIQDTIIRWRRM-SGYNALWVP 219 (1022)
Q Consensus 186 ~nG~LHiGHal~~~i~Dii~Ry~rm-~G~~Vl~~p 219 (1022)
|||.+||||.++.+ + .|..| .|+++.+..
T Consensus 11 PSG~~HLGnylG~i-k----~wv~lq~~~~~~~~I 40 (398)
T PRK12283 11 PTGRLHLGHYHGVL-K----NWVKLQHEYECFFFV 40 (398)
T ss_pred CCCcchHHHHHHHH-H----HHHHHhcCCcEEEEe
Confidence 69999999988833 3 44443 577765443
No 187
>COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=26.84 E-value=1.1e+02 Score=35.19 Aligned_cols=46 Identities=20% Similarity=0.211 Sum_probs=28.9
Q ss_pred cEEEECCCCCCCCCCCcchhHHHHHHHHHHHHHHhCCC-eeeeeccCCccChh
Q 001708 176 SFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGY-NALWVPGMDHAGIA 227 (1022)
Q Consensus 176 ~f~i~~pPPy~nG~LHiGHal~~~i~Dii~Ry~rm~G~-~Vl~~pG~D~~Glp 227 (1022)
++.+++| =-|||.|||||.++.+ -.+|+...++ ++.+ +=.|-|.+-
T Consensus 5 ~~~vlSG-~~PSG~lHLGny~ga~----~~~v~~q~~~~~~f~-~IaDlha~t 51 (314)
T COG0180 5 KFRVLSG-IQPSGKLHLGNYLGAI----RNWVLLQEEYYECFF-FIADLHAIT 51 (314)
T ss_pred CceEEec-CCCCCCcchhHhHHHH----HHHHHHhcccCceEE-EEecHHHhh
Confidence 4555555 3579999999998865 3455555664 5544 444555443
No 188
>PTZ00126 tyrosyl-tRNA synthetase; Provisional
Probab=26.13 E-value=61 Score=38.21 Aligned_cols=40 Identities=13% Similarity=0.160 Sum_probs=22.1
Q ss_pred EEEECCCCCCCCCCCcchhHHHHHHHHHHHHHHhCCCeeeeecc
Q 001708 177 FVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPG 220 (1022)
Q Consensus 177 f~i~~pPPy~nG~LHiGHal~~~i~Dii~Ry~rm~G~~Vl~~pG 220 (1022)
+.+..| -=|||.|||||..-.. --+..++. .|++|.+..|
T Consensus 67 ~~v~~G-~~PTG~lHLG~g~i~~--~~~~~lq~-~G~~v~~~Ia 106 (383)
T PTZ00126 67 PICYDG-FEPSGRMHIAQGILKA--INVNKLTK-AGCVFVFWVA 106 (383)
T ss_pred CEEEEE-ECCCCcccccchHhHh--HHHHHHHh-CCCeEEEEEc
Confidence 344443 2459999999932111 11222332 3888887766
No 189
>PTZ00348 tyrosyl-tRNA synthetase; Provisional
Probab=25.73 E-value=55 Score=41.38 Aligned_cols=41 Identities=12% Similarity=0.151 Sum_probs=23.3
Q ss_pred CcEEEECCCCCCCCCCCcchhHHHHHHHHHHHHHH-hCCCeeeeecc
Q 001708 175 PSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRR-MSGYNALWVPG 220 (1022)
Q Consensus 175 ~~f~i~~pPPy~nG~LHiGHal~~~i~Dii~Ry~r-m~G~~Vl~~pG 220 (1022)
+++.+.+| -=|||.|||||. ++. .+..+.. ..|++|.+..+
T Consensus 31 ~~~rv~sG-i~PTG~lHLGng---~~~-aik~~~~~q~g~~~~~lIA 72 (682)
T PTZ00348 31 PLIRCYDG-FEPSGRMHIAQG---IFK-AVNVNKCTQAGCEFVFWVA 72 (682)
T ss_pred CCCEEEEe-eCCCCcCeeccH---HHH-HHHHHHHHhCCCeEEEEEc
Confidence 34555655 356999999993 222 2222222 35888765543
No 190
>KOG2144 consensus Tyrosyl-tRNA synthetase, cytoplasmic [Translation, ribosomal structure and biogenesis]
Probab=24.44 E-value=50 Score=37.05 Aligned_cols=56 Identities=27% Similarity=0.329 Sum_probs=35.5
Q ss_pred CCcCcccccccccc-hHHHHHHHHHhhhcCCCCceEEEeccceeCCC-CccceecCCcccCcchhhc
Q 001708 654 YPTSVLETGHDILF-FWVARMVMLGIKLGGEVPFTKVYLHPMIRDAH-GRKMSKSLGNVIDPLEVIN 718 (1022)
Q Consensus 654 ~P~dl~~~G~Dil~-fW~a~m~~~~~~l~~~~Pfk~V~~Hg~v~D~~-GrKMSKSlGNvIdP~dvI~ 718 (1022)
.-+|..+.|-||-. |=+|+-.+-.+.. +. +-.+.|.||-... |.|||+| ||..-|+
T Consensus 176 L~vD~qfgGvDQRKIf~~A~eylp~l~y--kK--rihLmnpMvPGL~q~~KMSsS-----d~~SkId 233 (360)
T KOG2144|consen 176 LEVDAQFGGVDQRKIFVLAEEYLPDLGY--KK--RIHLMNPMVPGLAQGEKMSSS-----DPLSKID 233 (360)
T ss_pred HhhhHHhcCccHHHHHHHHHHhhhhhCc--cc--ceeecCCCCccccccCccccC-----Ccccccc
Confidence 45788899999854 3344443322221 11 3577899987666 9999999 5554444
No 191
>PF00749 tRNA-synt_1c: tRNA synthetases class I (E and Q), catalytic domain; InterPro: IPR020058 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of Escherichia coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure []. ; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 2HZ7_A 2CFO_A 4A91_A 1NZJ_A 1N78_A 1G59_C 2CV2_A 2CV1_A 2CV0_B 1GLN_A ....
Probab=23.16 E-value=68 Score=36.72 Aligned_cols=48 Identities=27% Similarity=0.298 Sum_probs=28.4
Q ss_pred cccccccch-HHHHHHHHHhhhcCCCCceEEEeccceeCCCCccceecCCccc
Q 001708 660 ETGHDILFF-WVARMVMLGIKLGGEVPFTKVYLHPMIRDAHGRKMSKSLGNVI 711 (1022)
Q Consensus 660 ~~G~Dil~f-W~a~m~~~~~~l~~~~Pfk~V~~Hg~v~D~~GrKMSKSlGNvI 711 (1022)
+=|.|.+.. ..+.++.-. |.-..| ...-|.+++|.+|+|+||+.|-.-
T Consensus 204 iRG~D~l~~t~~Q~~L~~~--Lg~~~P--~~~H~pl~l~~~g~kLSKR~~~~~ 252 (314)
T PF00749_consen 204 IRGEDLLSSTPRQILLYEA--LGWPPP--PYAHLPLILNEDGKKLSKRKGAKS 252 (314)
T ss_dssp EEEGGGTTCHHHHHHHHHH--CTSSS---EEEEEEEEEETTSSBSSTTCSHHB
T ss_pred EEccccccccHHHHHHHHH--hCCCCc--ceEeeeeeecCCCcEechhhcccc
Confidence 346665542 333343333 322334 344458889999999999988663
No 192
>KOG2623 consensus Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=22.79 E-value=65 Score=37.62 Aligned_cols=56 Identities=23% Similarity=0.235 Sum_probs=37.1
Q ss_pred CCcCcccccccccchHHHHHHHHHhhh----cC--CCCceEEEeccceeCCCCccceecCCcccCcchh
Q 001708 654 YPTSVLETGHDILFFWVARMVMLGIKL----GG--EVPFTKVYLHPMIRDAHGRKMSKSLGNVIDPLEV 716 (1022)
Q Consensus 654 ~P~dl~~~G~Dil~fW~a~m~~~~~~l----~~--~~Pfk~V~~Hg~v~D~~GrKMSKSlGNvIdP~dv 716 (1022)
|-..+.+.|.||.-. ++.|..+ .+ ..+| =++-.++.+..|.|+-||-||.|+.+--
T Consensus 226 ~g~~~QlGGsDQwGN-----itaG~dlI~ki~~~~~~vf--GlT~PLlTsstG~KlGKSaGnAvWLdp~ 287 (467)
T KOG2623|consen 226 YGCRFQLGGSDQWGN-----ITAGTDLIRKIMPIQAFVF--GLTFPLLTSSTGAKLGKSAGNAVWLDPS 287 (467)
T ss_pred cCeeEEecccccccc-----cchHHHHHHHhccccccee--eeeeeeEecCcchhhccCCCceEEecCc
Confidence 456788899999653 1112211 11 1222 3566788899999999999999987543
No 193
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=22.19 E-value=93 Score=38.21 Aligned_cols=20 Identities=20% Similarity=0.238 Sum_probs=12.3
Q ss_pred hhhhhhhhhhhhhhhHHHhh
Q 001708 14 LSPLLHSAAASVSDAIVSLA 33 (1022)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~ 33 (1022)
-.|...-||...+...+.|.
T Consensus 370 ~~~~y~raa~~ai~iYl~l~ 389 (517)
T PF12569_consen 370 SHPFYRRAAKGAIRIYLELH 389 (517)
T ss_pred cCHHHHHHHHHHHHHHHHHh
Confidence 35666667766666655554
No 194
>PLN02907 glutamate-tRNA ligase
Probab=20.38 E-value=2.3e+02 Score=36.38 Aligned_cols=37 Identities=11% Similarity=0.106 Sum_probs=27.8
Q ss_pred CCCchHHHHHHHhccCCCcccccchhhhHHH-HHHHHH
Q 001708 756 ECGTDALRFALVSYTAQSDKINLDIQRVVGY-RQWCNK 792 (1022)
Q Consensus 756 ~~GaDaLR~~L~~~~~~~~Dinf~~~~~~~~-r~f~nk 792 (1022)
.|-+++||=++...+....+..|+++.+... |+.++.
T Consensus 481 G~~~eai~~f~~~~g~s~~~~~~~~~~l~~~nr~~id~ 518 (722)
T PLN02907 481 GLKIEALKQFILSQGASKNLNLMEWDKLWTINKKIIDP 518 (722)
T ss_pred CCCHHHHHHHHHHhCCCcCCccccHHHHHHHHHHHhcc
Confidence 4778999999888777777899999888654 344443
No 195
>PRK12282 tryptophanyl-tRNA synthetase II; Reviewed
Probab=20.01 E-value=52 Score=38.05 Aligned_cols=15 Identities=40% Similarity=0.645 Sum_probs=12.2
Q ss_pred CCCCCCcchhHHHHH
Q 001708 186 VTGALHIGHALTTAI 200 (1022)
Q Consensus 186 ~nG~LHiGHal~~~i 200 (1022)
|||.+||||.++.+.
T Consensus 11 PTG~~HLGn~l~~~~ 25 (333)
T PRK12282 11 PTGKLHLGHYVGSLK 25 (333)
T ss_pred CCCcchHHHHHHHHH
Confidence 489999999887543
Done!