Query 001709
Match_columns 1022
No_of_seqs 612 out of 3425
Neff 4.6
Searched_HMMs 46136
Date Fri Mar 29 07:27:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001709.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001709hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1116 TauB ABC-type nitrate/ 100.0 6.6E-42 1.4E-46 362.8 18.5 208 710-956 14-244 (248)
2 PLN02934 triacylglycerol lipas 100.0 2.8E-38 6.1E-43 361.0 18.3 194 77-330 164-419 (515)
3 COG3842 PotA ABC-type spermidi 100.0 2.1E-38 4.6E-43 352.5 13.7 214 694-940 5-246 (352)
4 PLN00413 triacylglycerol lipas 100.0 1.8E-36 3.9E-41 344.5 18.9 195 77-331 143-383 (479)
5 PLN02162 triacylglycerol lipas 100.0 2.2E-36 4.8E-41 342.9 18.5 195 77-331 141-378 (475)
6 COG3839 MalK ABC-type sugar tr 100.0 2.4E-36 5.1E-41 334.6 13.4 208 695-935 4-238 (338)
7 COG1125 OpuBA ABC-type proline 100.0 2.3E-36 5.1E-41 320.2 11.5 197 710-934 12-239 (309)
8 COG1118 CysA ABC-type sulfate/ 100.0 2E-35 4.3E-40 319.8 12.5 203 710-940 13-247 (345)
9 COG4525 TauB ABC-type taurine 100.0 9.3E-35 2E-39 298.5 14.1 226 700-959 6-257 (259)
10 COG1126 GlnQ ABC-type polar am 100.0 4E-34 8.7E-39 298.0 12.9 181 695-903 3-211 (240)
11 COG1135 AbcC ABC-type metal io 100.0 4.7E-32 1E-36 294.1 12.9 177 695-894 2-207 (339)
12 COG1136 SalX ABC-type antimicr 100.0 2E-31 4.3E-36 281.6 15.6 184 697-903 4-217 (226)
13 PLN02454 triacylglycerol lipas 100.0 4.7E-31 1E-35 297.8 17.9 173 133-330 130-320 (414)
14 PLN02324 triacylglycerol lipas 100.0 5.9E-31 1.3E-35 296.8 17.0 162 134-330 133-312 (415)
15 PRK11432 fbpC ferric transport 100.0 3.3E-31 7.1E-36 296.3 13.8 212 694-938 6-244 (351)
16 PLN02802 triacylglycerol lipas 100.0 6.7E-31 1.4E-35 300.9 16.5 156 132-330 250-426 (509)
17 TIGR03265 PhnT2 putative 2-ami 100.0 3.1E-31 6.7E-36 296.6 13.1 211 695-938 5-242 (353)
18 COG1120 FepC ABC-type cobalami 100.0 1.6E-30 3.5E-35 279.3 16.3 177 701-907 6-211 (258)
19 cd00519 Lipase_3 Lipase (class 100.0 6.6E-30 1.4E-34 267.0 19.0 148 131-327 61-217 (229)
20 PRK09452 potA putrescine/sperm 100.0 1.2E-30 2.5E-35 294.3 13.8 211 695-938 15-252 (375)
21 PRK11607 potG putrescine trans 100.0 1.1E-30 2.3E-35 294.7 13.3 212 694-938 19-257 (377)
22 COG4175 ProV ABC-type proline/ 100.0 2.5E-31 5.3E-36 288.6 7.7 205 706-938 35-272 (386)
23 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 4.1E-30 9E-35 275.3 16.7 179 700-904 7-215 (254)
24 PLN02310 triacylglycerol lipas 100.0 3.5E-30 7.6E-35 290.4 16.9 146 133-330 132-312 (405)
25 PRK11650 ugpC glycerol-3-phosp 100.0 1.7E-30 3.8E-35 290.9 14.2 195 711-933 16-237 (356)
26 PLN02571 triacylglycerol lipas 100.0 4E-30 8.6E-35 290.6 17.1 160 133-330 145-322 (413)
27 TIGR03258 PhnT 2-aminoethylpho 100.0 1.4E-30 3E-35 292.3 12.9 199 711-937 17-245 (362)
28 COG1122 CbiO ABC-type cobalt t 100.0 4.7E-30 1E-34 273.2 14.4 179 700-907 6-211 (235)
29 PRK10851 sulfate/thiosulfate t 100.0 6.1E-30 1.3E-34 286.3 14.2 199 711-937 14-243 (353)
30 PLN02719 triacylglycerol lipas 100.0 6.3E-29 1.4E-33 284.8 19.6 159 134-330 214-410 (518)
31 COG1127 Ttg2A ABC-type transpo 100.0 3.1E-29 6.8E-34 264.8 14.8 180 693-905 7-216 (263)
32 COG1117 PstB ABC-type phosphat 100.0 1.1E-29 2.5E-34 264.2 11.3 180 695-907 8-220 (253)
33 TIGR01186 proV glycine betaine 100.0 1.6E-29 3.6E-34 283.9 13.4 170 710-907 4-202 (363)
34 PLN02753 triacylglycerol lipas 100.0 2.9E-29 6.3E-34 288.2 15.7 160 133-330 227-424 (531)
35 KOG4569 Predicted lipase [Lipi 100.0 4.5E-29 9.7E-34 277.8 15.5 178 129-355 101-290 (336)
36 COG3840 ThiQ ABC-type thiamine 100.0 3.2E-29 7E-34 255.6 13.1 175 700-906 4-201 (231)
37 PRK11000 maltose/maltodextrin 100.0 3.7E-29 8E-34 281.3 13.7 197 711-932 15-235 (369)
38 COG3638 ABC-type phosphate/pho 100.0 8.6E-29 1.9E-33 260.9 14.4 192 695-922 4-231 (258)
39 COG2884 FtsE Predicted ATPase 100.0 5E-29 1.1E-33 255.6 11.8 138 695-845 2-167 (223)
40 PLN02761 lipase class 3 family 100.0 1.1E-28 2.4E-33 283.2 15.7 157 133-330 212-408 (527)
41 TIGR02314 ABC_MetN D-methionin 100.0 2.4E-28 5.2E-33 272.7 17.0 168 712-901 18-214 (343)
42 PLN03037 lipase class 3 family 100.0 2E-28 4.3E-33 281.1 15.9 152 133-329 235-422 (525)
43 COG1131 CcmA ABC-type multidru 100.0 2.7E-28 5.9E-33 266.7 15.9 163 695-885 5-192 (293)
44 cd03261 ABC_Org_Solvent_Resist 100.0 4E-28 8.7E-33 254.6 16.1 155 710-886 11-194 (235)
45 TIGR00960 3a0501s02 Type II (G 100.0 4.8E-28 1E-32 250.6 16.1 165 701-888 5-197 (216)
46 PLN02408 phospholipase A1 100.0 3.5E-28 7.6E-33 271.7 15.7 141 134-314 119-272 (365)
47 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 6.9E-28 1.5E-32 249.5 16.6 155 712-888 17-200 (218)
48 PRK11247 ssuB aliphatic sulfon 100.0 2.2E-27 4.7E-32 254.7 20.5 167 693-887 11-192 (257)
49 cd03259 ABC_Carb_Solutes_like 100.0 6E-28 1.3E-32 249.4 14.9 156 711-888 12-190 (213)
50 cd03226 ABC_cobalt_CbiO_domain 100.0 9.4E-28 2E-32 246.9 16.1 153 712-887 13-184 (205)
51 cd03265 ABC_DrrA DrrA is the A 100.0 9.9E-28 2.1E-32 249.3 15.5 155 710-886 11-189 (220)
52 COG1124 DppF ABC-type dipeptid 100.0 7.5E-28 1.6E-32 254.9 14.6 166 713-907 21-214 (252)
53 COG2274 SunT ABC-type bacterio 99.9 2.7E-28 5.8E-33 293.0 12.4 225 652-903 419-682 (709)
54 PRK13537 nodulation ABC transp 99.9 9.8E-28 2.1E-32 263.3 15.8 164 694-885 7-194 (306)
55 KOG0058 Peptide exporter, ABC 99.9 3.6E-28 7.8E-33 285.6 11.8 166 666-845 438-634 (716)
56 PRK13647 cbiO cobalt transport 99.9 3E-27 6.6E-32 255.0 17.9 153 711-886 17-195 (274)
57 cd03225 ABC_cobalt_CbiO_domain 99.9 2.1E-27 4.5E-32 244.8 15.8 153 712-887 14-192 (211)
58 cd03293 ABC_NrtD_SsuB_transpor 99.9 2.4E-27 5.2E-32 246.4 16.1 168 712-902 17-206 (220)
59 TIGR02211 LolD_lipo_ex lipopro 99.9 3.2E-27 6.9E-32 245.0 16.9 167 712-900 18-213 (221)
60 cd03301 ABC_MalK_N The N-termi 99.9 1.9E-27 4.2E-32 245.3 15.1 155 711-887 12-189 (213)
61 cd03256 ABC_PhnC_transporter A 99.9 2.8E-27 6.1E-32 248.1 16.3 153 712-886 14-202 (241)
62 PRK11144 modC molybdate transp 99.9 1.7E-27 3.7E-32 266.2 15.4 197 717-938 16-236 (352)
63 PRK11629 lolD lipoprotein tran 99.9 4E-27 8.6E-32 247.1 17.3 155 712-888 22-205 (233)
64 PRK13650 cbiO cobalt transport 99.9 2.9E-27 6.2E-32 255.8 16.6 165 700-886 7-198 (279)
65 cd03268 ABC_BcrA_bacitracin_re 99.9 2.3E-27 5.1E-32 244.2 15.1 154 711-887 12-184 (208)
66 TIGR02315 ABC_phnC phosphonate 99.9 3.4E-27 7.3E-32 248.1 15.9 154 711-886 14-203 (243)
67 cd03296 ABC_CysA_sulfate_impor 99.9 3.6E-27 7.8E-32 248.3 16.0 155 711-887 14-195 (239)
68 PRK13536 nodulation factor exp 99.9 4.2E-27 9.2E-32 262.3 17.3 164 694-885 41-228 (340)
69 PRK11153 metN DL-methionine tr 99.9 4.2E-27 9.2E-32 262.1 17.0 154 711-886 17-198 (343)
70 TIGR01188 drrA daunorubicin re 99.9 2.5E-27 5.4E-32 259.0 14.8 154 710-886 4-181 (302)
71 PRK11248 tauB taurine transpor 99.9 1E-26 2.3E-31 248.5 19.3 153 711-886 13-186 (255)
72 COG4555 NatA ABC-type Na+ tran 99.9 4.3E-28 9.2E-33 250.7 8.0 182 711-901 14-222 (245)
73 PRK13637 cbiO cobalt transport 99.9 4.9E-27 1.1E-31 255.2 16.6 168 712-907 20-217 (287)
74 cd03235 ABC_Metallic_Cations A 99.9 5.7E-27 1.2E-31 242.2 16.2 167 711-901 11-205 (213)
75 cd03292 ABC_FtsE_transporter F 99.9 5.5E-27 1.2E-31 241.8 16.1 155 712-889 14-196 (214)
76 cd03263 ABC_subfamily_A The AB 99.9 5.1E-27 1.1E-31 243.3 15.3 153 712-888 15-191 (220)
77 TIGR03864 PQQ_ABC_ATP ABC tran 99.9 1E-26 2.2E-31 244.4 17.5 169 711-901 13-205 (236)
78 cd03269 ABC_putative_ATPase Th 99.9 6.2E-27 1.3E-31 241.4 15.5 154 711-887 12-186 (210)
79 cd03266 ABC_NatA_sodium_export 99.9 5.6E-27 1.2E-31 242.7 15.1 153 713-888 19-195 (218)
80 TIGR03608 L_ocin_972_ABC putat 99.9 9.9E-27 2.1E-31 238.6 16.5 157 711-890 10-195 (206)
81 cd03219 ABC_Mj1267_LivG_branch 99.9 7E-27 1.5E-31 244.7 15.7 153 711-886 12-200 (236)
82 PRK10070 glycine betaine trans 99.9 5.1E-27 1.1E-31 266.8 15.8 155 710-886 39-222 (400)
83 cd03218 ABC_YhbG The ABC trans 99.9 8E-27 1.7E-31 243.7 16.0 154 710-886 11-190 (232)
84 TIGR02673 FtsE cell division A 99.9 6.9E-27 1.5E-31 241.4 15.2 154 711-887 14-195 (214)
85 PRK13635 cbiO cobalt transport 99.9 8.5E-27 1.8E-31 252.4 16.4 181 700-902 8-214 (279)
86 TIGR01288 nodI ATP-binding ABC 99.9 6.6E-27 1.4E-31 255.7 15.6 169 710-901 15-208 (303)
87 cd03264 ABC_drug_resistance_li 99.9 6.3E-27 1.4E-31 241.5 14.3 153 711-887 12-187 (211)
88 PF01764 Lipase_3: Lipase (cla 99.9 6.5E-27 1.4E-31 224.7 13.4 133 136-314 1-138 (140)
89 cd03224 ABC_TM1139_LivF_branch 99.9 1.2E-26 2.5E-31 240.6 15.8 155 711-887 12-190 (222)
90 TIGR01166 cbiO cobalt transpor 99.9 1E-26 2.2E-31 236.7 15.1 154 710-886 3-184 (190)
91 cd03262 ABC_HisP_GlnQ_permease 99.9 1.1E-26 2.3E-31 239.5 15.4 164 701-889 4-195 (213)
92 PRK09536 btuD corrinoid ABC tr 99.9 1.1E-26 2.5E-31 264.1 17.1 153 710-885 14-195 (402)
93 cd03295 ABC_OpuCA_Osmoprotecti 99.9 1.4E-26 3.1E-31 244.2 16.6 153 712-886 14-193 (242)
94 cd03258 ABC_MetN_methionine_tr 99.9 9.6E-27 2.1E-31 243.6 15.2 153 713-887 19-199 (233)
95 PRK10584 putative ABC transpor 99.9 1.5E-26 3.2E-31 241.4 16.5 168 712-901 23-219 (228)
96 PRK13634 cbiO cobalt transport 99.9 1.1E-26 2.3E-31 252.8 16.0 153 712-886 20-203 (290)
97 cd03298 ABC_ThiQ_thiamine_tran 99.9 1.3E-26 2.8E-31 239.2 15.8 149 717-887 16-187 (211)
98 PRK11174 cysteine/glutathione 99.9 1.2E-26 2.6E-31 273.2 17.0 178 700-903 352-558 (588)
99 PRK10908 cell division protein 99.9 1.8E-26 4E-31 240.1 16.4 168 711-901 14-210 (222)
100 TIGR03415 ABC_choXWV_ATP choli 99.9 7.4E-27 1.6E-31 264.0 14.3 171 707-905 32-235 (382)
101 PRK11831 putative ABC transpor 99.9 1.8E-26 3.8E-31 248.1 16.5 166 695-887 8-202 (269)
102 PRK13651 cobalt transporter AT 99.9 1.5E-26 3.3E-31 254.1 16.3 166 713-907 21-237 (305)
103 PRK15079 oligopeptide ABC tran 99.9 1.6E-26 3.4E-31 256.8 16.6 186 694-907 8-234 (331)
104 PRK10575 iron-hydroxamate tran 99.9 1.9E-26 4.1E-31 247.1 16.5 165 695-886 12-205 (265)
105 PRK13646 cbiO cobalt transport 99.9 1.4E-26 3E-31 251.3 15.5 153 712-886 20-203 (286)
106 PRK13540 cytochrome c biogenes 99.9 3.6E-26 7.8E-31 235.0 17.7 163 711-896 13-194 (200)
107 TIGR03797 NHPM_micro_ABC2 NHPM 99.9 1.2E-26 2.6E-31 278.4 16.4 178 700-903 454-659 (686)
108 PRK13632 cbiO cobalt transport 99.9 1.9E-26 4.1E-31 248.1 16.2 181 695-901 8-215 (271)
109 cd03231 ABC_CcmA_heme_exporter 99.9 3.1E-26 6.8E-31 235.9 17.1 156 710-888 11-184 (201)
110 TIGR02868 CydC thiol reductant 99.9 9.6E-27 2.1E-31 270.8 15.0 162 700-886 337-526 (529)
111 cd03257 ABC_NikE_OppD_transpor 99.9 2.4E-26 5.1E-31 238.9 16.0 154 713-888 19-205 (228)
112 TIGR03522 GldA_ABC_ATP gliding 99.9 1.6E-26 3.4E-31 252.8 15.3 168 710-901 13-205 (301)
113 PRK11300 livG leucine/isoleuci 99.9 2.3E-26 5E-31 243.7 16.0 165 695-886 6-211 (255)
114 COG0411 LivG ABC-type branched 99.9 8.1E-27 1.7E-31 247.1 12.4 178 695-900 5-222 (250)
115 PRK13538 cytochrome c biogenes 99.9 3.3E-26 7.2E-31 235.9 16.5 155 710-887 12-187 (204)
116 TIGR01189 ccmA heme ABC export 99.9 3.8E-26 8.1E-31 234.2 16.8 155 710-887 11-185 (198)
117 PRK09493 glnQ glutamine ABC tr 99.9 2.5E-26 5.5E-31 241.7 15.7 153 711-886 13-193 (240)
118 TIGR02142 modC_ABC molybdenum 99.9 2E-26 4.3E-31 257.6 15.7 148 717-886 15-189 (354)
119 PRK13643 cbiO cobalt transport 99.9 2.8E-26 6.1E-31 249.4 16.3 166 713-907 20-216 (288)
120 cd03234 ABCG_White The White s 99.9 3.8E-26 8.2E-31 238.7 16.2 180 700-902 6-218 (226)
121 PRK13648 cbiO cobalt transport 99.9 4.3E-26 9.3E-31 244.8 16.9 169 695-888 8-202 (269)
122 PRK10247 putative ABC transpor 99.9 6.4E-26 1.4E-30 237.4 17.7 180 694-901 7-210 (225)
123 PRK10253 iron-enterobactin tra 99.9 3.7E-26 8.1E-31 244.8 16.2 154 711-886 19-201 (265)
124 COG4988 CydD ABC-type transpor 99.9 1.2E-26 2.7E-31 268.3 13.1 222 656-905 271-531 (559)
125 PRK11264 putative amino-acid A 99.9 3.4E-26 7.4E-31 241.8 15.4 153 711-886 15-201 (250)
126 PRK10895 lipopolysaccharide AB 99.9 5.2E-26 1.1E-30 239.5 16.7 168 711-901 15-210 (241)
127 PRK13633 cobalt transporter AT 99.9 5E-26 1.1E-30 246.1 16.8 169 712-902 23-218 (280)
128 TIGR01277 thiQ thiamine ABC tr 99.9 4.6E-26 9.9E-31 236.1 15.7 166 714-901 13-202 (213)
129 TIGR03410 urea_trans_UrtE urea 99.9 3.7E-26 8E-31 238.7 15.0 155 711-886 12-189 (230)
130 TIGR03796 NHPM_micro_ABC1 NHPM 99.9 2.4E-26 5.1E-31 276.6 15.4 178 700-903 480-686 (710)
131 COG0410 LivF ABC-type branched 99.9 4.3E-26 9.4E-31 240.0 15.4 131 709-848 13-169 (237)
132 TIGR02982 heterocyst_DevA ABC 99.9 5.6E-26 1.2E-30 236.5 16.1 168 712-901 18-214 (220)
133 KOG0055 Multidrug/pheromone ex 99.9 1.4E-26 3.1E-31 284.4 13.5 210 666-903 321-562 (1228)
134 cd03294 ABC_Pro_Gly_Bertaine T 99.9 3.6E-26 7.7E-31 245.9 15.0 155 710-886 35-218 (269)
135 COG4181 Predicted ABC-type tra 99.9 3.9E-26 8.5E-31 231.3 14.3 178 695-896 7-214 (228)
136 PRK13644 cbiO cobalt transport 99.9 4.1E-26 8.9E-31 246.3 15.5 168 711-901 14-208 (274)
137 PRK11231 fecE iron-dicitrate t 99.9 5.4E-26 1.2E-30 241.8 16.2 153 711-886 14-195 (255)
138 PRK13636 cbiO cobalt transport 99.9 5.3E-26 1.1E-30 246.5 16.4 179 700-901 8-215 (283)
139 TIGR03375 type_I_sec_LssB type 99.9 2.9E-26 6.3E-31 275.4 15.8 180 700-903 466-674 (694)
140 TIGR03005 ectoine_ehuA ectoine 99.9 5.6E-26 1.2E-30 241.0 16.0 162 701-886 4-204 (252)
141 PRK13640 cbiO cobalt transport 99.9 5.5E-26 1.2E-30 246.2 16.1 168 695-887 6-202 (282)
142 PRK13641 cbiO cobalt transport 99.9 4.6E-26 1E-30 247.4 15.4 168 712-902 20-219 (287)
143 PRK11160 cysteine/glutathione 99.9 3.7E-26 8E-31 269.5 15.9 179 700-903 341-548 (574)
144 PRK13631 cbiO cobalt transport 99.9 4.8E-26 1E-30 251.8 15.6 167 694-886 21-233 (320)
145 PRK14250 phosphate ABC transpo 99.9 6.9E-26 1.5E-30 239.4 16.1 153 711-886 15-189 (241)
146 COG4148 ModC ABC-type molybdat 99.9 1.2E-26 2.6E-31 249.0 10.3 163 717-908 16-202 (352)
147 TIGR03411 urea_trans_UrtD urea 99.9 7.2E-26 1.6E-30 238.2 15.8 152 711-886 14-199 (242)
148 PRK10619 histidine/lysine/argi 99.9 9.3E-26 2E-30 240.3 16.8 167 695-889 6-212 (257)
149 PRK13539 cytochrome c biogenes 99.9 1.1E-25 2.4E-30 232.8 16.7 153 711-886 14-184 (207)
150 PRK11176 lipid transporter ATP 99.9 4.5E-26 9.7E-31 267.8 15.6 180 700-903 344-553 (582)
151 PRK13548 hmuV hemin importer A 99.9 1.1E-25 2.4E-30 240.6 17.0 157 710-888 13-200 (258)
152 PRK11308 dppF dipeptide transp 99.9 8.5E-26 1.8E-30 250.5 16.7 153 712-886 28-212 (327)
153 PRK09984 phosphonate/organopho 99.9 1E-25 2.2E-30 240.6 16.6 155 710-886 15-210 (262)
154 PRK13642 cbiO cobalt transport 99.9 1E-25 2.2E-30 243.3 16.3 181 700-902 7-214 (277)
155 PRK13543 cytochrome c biogenes 99.9 1.6E-25 3.4E-30 232.8 16.8 165 694-886 11-194 (214)
156 cd03260 ABC_PstB_phosphate_tra 99.9 8.8E-26 1.9E-30 235.5 14.9 154 711-886 12-197 (227)
157 COG4152 ABC-type uncharacteriz 99.9 8.8E-27 1.9E-31 246.4 7.4 187 695-895 3-213 (300)
158 TIGR03873 F420-0_ABC_ATP propo 99.9 1.6E-25 3.4E-30 238.4 16.8 154 710-886 12-194 (256)
159 COG1132 MdlB ABC-type multidru 99.9 6.1E-26 1.3E-30 266.6 14.8 208 666-903 302-538 (567)
160 PRK11124 artP arginine transpo 99.9 1.3E-25 2.9E-30 236.5 15.9 154 711-887 14-199 (242)
161 TIGR00972 3a0107s01c2 phosphat 99.9 1.2E-25 2.7E-30 237.8 15.6 151 711-886 13-200 (247)
162 TIGR02857 CydD thiol reductant 99.9 7.8E-26 1.7E-30 263.2 15.5 173 700-897 323-525 (529)
163 TIGR02203 MsbA_lipidA lipid A 99.9 6.3E-26 1.4E-30 265.5 14.7 180 700-903 333-542 (571)
164 PRK11022 dppD dipeptide transp 99.9 1.4E-25 3E-30 248.6 16.6 172 712-907 20-226 (326)
165 COG3845 ABC-type uncharacteriz 99.9 6.6E-26 1.4E-30 257.8 14.3 179 694-906 4-211 (501)
166 cd03267 ABC_NatA_like Similar 99.9 1.2E-25 2.7E-30 237.0 15.3 172 708-901 30-227 (236)
167 TIGR01978 sufC FeS assembly AT 99.9 1.9E-25 4.1E-30 234.6 16.5 155 711-888 12-203 (243)
168 cd03252 ABCC_Hemolysin The ABC 99.9 1.5E-25 3.2E-30 235.2 15.6 177 701-901 4-209 (237)
169 PRK13652 cbiO cobalt transport 99.9 1.8E-25 4E-30 241.4 16.8 153 712-886 17-195 (277)
170 PRK10790 putative multidrug tr 99.9 1.1E-25 2.3E-30 265.6 16.2 179 700-903 343-549 (592)
171 PRK13638 cbiO cobalt transport 99.9 7.7E-26 1.7E-30 243.1 13.6 154 711-887 13-194 (271)
172 TIGR01193 bacteriocin_ABC ABC- 99.9 1.1E-25 2.5E-30 270.8 16.5 178 700-903 476-683 (708)
173 PRK13649 cbiO cobalt transport 99.9 1.5E-25 3.2E-30 241.8 15.6 153 712-887 20-203 (280)
174 PRK14247 phosphate ABC transpo 99.9 1.8E-25 3.8E-30 236.7 15.7 152 711-886 15-202 (250)
175 cd03297 ABC_ModC_molybdenum_tr 99.9 1.8E-25 3.9E-30 231.5 15.1 153 710-886 11-189 (214)
176 PRK10771 thiQ thiamine transpo 99.9 2E-25 4.3E-30 234.2 15.5 151 716-888 16-189 (232)
177 cd03245 ABCC_bacteriocin_expor 99.9 1.7E-25 3.7E-30 231.9 14.8 164 712-900 17-210 (220)
178 cd03300 ABC_PotA_N PotA is an 99.9 1.8E-25 3.9E-30 234.8 15.0 171 711-903 12-206 (232)
179 TIGR00958 3a01208 Conjugate Tr 99.9 9.8E-26 2.1E-30 272.1 14.9 178 700-903 481-688 (711)
180 TIGR02769 nickel_nikE nickel i 99.9 2.2E-25 4.7E-30 238.9 15.8 155 711-887 23-209 (265)
181 KOG0057 Mitochondrial Fe/S clu 99.9 1.2E-25 2.6E-30 257.6 14.7 181 700-906 354-563 (591)
182 PRK11614 livF leucine/isoleuci 99.9 2.2E-25 4.7E-30 234.2 15.5 154 711-886 17-194 (237)
183 cd03244 ABCC_MRP_domain2 Domai 99.9 2.2E-25 4.8E-30 231.2 15.4 176 701-901 6-210 (221)
184 KOG0056 Heavy metal exporter H 99.9 2E-26 4.4E-31 259.5 8.1 256 605-903 452-747 (790)
185 TIGR03740 galliderm_ABC gallid 99.9 2.1E-25 4.6E-30 232.3 15.2 152 711-886 12-181 (223)
186 PRK13639 cbiO cobalt transport 99.9 2.4E-25 5.1E-30 240.3 15.9 178 700-901 4-210 (275)
187 PRK13645 cbiO cobalt transport 99.9 2.4E-25 5.1E-30 241.7 15.9 152 713-886 25-208 (289)
188 PRK10762 D-ribose transporter 99.9 2.1E-25 4.5E-30 258.9 16.4 169 710-901 15-214 (501)
189 cd03290 ABCC_SUR1_N The SUR do 99.9 5.2E-25 1.1E-29 228.6 17.4 165 711-898 13-211 (218)
190 COG4559 ABC-type hemin transpo 99.9 1.7E-25 3.6E-30 233.1 13.4 168 709-906 11-212 (259)
191 PRK09473 oppD oligopeptide tra 99.9 4.7E-25 1E-29 244.9 17.9 184 694-906 12-233 (330)
192 KOG0055 Multidrug/pheromone ex 99.9 6.1E-26 1.3E-30 278.9 11.5 222 654-902 940-1198(1228)
193 PRK09700 D-allose transporter 99.9 2.6E-25 5.7E-30 258.4 16.2 155 710-887 16-203 (510)
194 PRK15112 antimicrobial peptide 99.9 3.6E-25 7.8E-30 237.7 15.9 153 712-886 26-207 (267)
195 PRK15093 antimicrobial peptide 99.9 3.4E-25 7.3E-30 245.6 16.2 182 695-907 4-231 (330)
196 COG1137 YhbG ABC-type (unclass 99.9 1.8E-26 4E-31 238.4 5.7 139 696-848 6-172 (243)
197 PRK15439 autoinducer 2 ABC tra 99.9 3.7E-25 8.1E-30 257.6 17.3 179 695-901 12-213 (510)
198 PRK13549 xylose transporter AT 99.9 3E-25 6.5E-30 257.9 16.3 164 695-886 6-200 (506)
199 cd03299 ABC_ModC_like Archeal 99.9 4.2E-25 9.1E-30 232.6 15.8 167 713-901 13-203 (235)
200 PRK14242 phosphate transporter 99.9 4.2E-25 9.1E-30 234.2 15.7 165 695-886 7-205 (253)
201 TIGR00968 3a0106s01 sulfate AB 99.9 4.9E-25 1.1E-29 232.4 16.0 170 711-902 12-205 (237)
202 PRK15056 manganese/iron transp 99.9 7.1E-25 1.5E-29 236.0 17.2 168 711-901 19-215 (272)
203 cd03248 ABCC_TAP TAP, the Tran 99.9 4.4E-25 9.5E-30 230.1 14.9 182 693-901 10-221 (226)
204 cd03233 ABC_PDR_domain1 The pl 99.9 6E-25 1.3E-29 227.1 15.6 165 702-903 8-195 (202)
205 cd03251 ABCC_MsbA MsbA is an e 99.9 5.7E-25 1.2E-29 230.0 15.6 167 712-902 15-210 (234)
206 PRK14273 phosphate ABC transpo 99.9 5.4E-25 1.2E-29 233.8 15.6 163 694-886 7-206 (254)
207 PRK14269 phosphate ABC transpo 99.9 8.2E-25 1.8E-29 231.6 16.4 154 711-886 14-198 (246)
208 cd03254 ABCC_Glucan_exporter_l 99.9 5.4E-25 1.2E-29 229.6 14.8 166 712-901 16-210 (229)
209 PRK13657 cyclic beta-1,2-gluca 99.9 4.5E-25 9.7E-30 260.4 15.8 179 700-903 337-544 (588)
210 cd03250 ABCC_MRP_domain1 Domai 99.9 9.5E-25 2E-29 224.6 15.9 159 712-901 18-200 (204)
211 TIGR01184 ntrCD nitrate transp 99.9 3.6E-25 7.9E-30 232.7 13.1 164 715-901 1-188 (230)
212 PRK11288 araG L-arabinose tran 99.9 6.7E-25 1.4E-29 254.7 16.4 154 710-886 15-197 (501)
213 PRK14267 phosphate ABC transpo 99.9 7E-25 1.5E-29 232.5 15.2 152 711-886 16-205 (253)
214 PTZ00265 multidrug resistance 99.9 2.8E-25 6E-30 285.1 14.2 182 700-903 1168-1433(1466)
215 PRK14241 phosphate transporter 99.9 9.7E-25 2.1E-29 232.6 16.1 167 711-901 16-220 (258)
216 PRK14235 phosphate transporter 99.9 1.1E-24 2.4E-29 234.0 16.5 163 694-886 19-219 (267)
217 PRK14248 phosphate ABC transpo 99.9 9E-25 2E-29 234.3 15.8 181 694-901 21-236 (268)
218 PRK13547 hmuV hemin importer A 99.9 9.9E-25 2.1E-29 236.0 16.2 170 710-901 12-228 (272)
219 COG1123 ATPase components of v 99.9 4.3E-25 9.4E-30 256.0 14.2 189 691-907 277-502 (539)
220 PRK14259 phosphate ABC transpo 99.9 1.2E-24 2.5E-29 234.2 16.6 179 694-902 13-227 (269)
221 PRK14254 phosphate ABC transpo 99.9 1.2E-24 2.5E-29 236.6 16.4 164 693-886 38-236 (285)
222 PRK10744 pstB phosphate transp 99.9 1.1E-24 2.4E-29 232.7 15.9 151 711-886 25-212 (260)
223 COG1129 MglA ABC-type sugar tr 99.9 7.5E-25 1.6E-29 252.5 15.7 179 694-906 8-216 (500)
224 COG4598 HisP ABC-type histidin 99.9 2.3E-25 4.9E-30 227.2 9.8 196 694-922 6-243 (256)
225 TIGR01187 potA spermidine/putr 99.9 1.7E-25 3.6E-30 247.6 9.2 151 727-905 1-171 (325)
226 PRK11701 phnK phosphonate C-P 99.9 1.7E-24 3.6E-29 230.8 16.5 156 711-888 18-211 (258)
227 TIGR02324 CP_lyasePhnL phospho 99.9 1.8E-24 4E-29 225.1 16.4 154 712-888 21-208 (224)
228 PRK14268 phosphate ABC transpo 99.9 1.3E-24 2.9E-29 231.8 15.5 151 711-886 24-210 (258)
229 PRK10982 galactose/methyl gala 99.9 1.3E-24 2.7E-29 251.6 16.5 154 710-886 9-191 (491)
230 TIGR01846 type_I_sec_HlyB type 99.9 8.8E-25 1.9E-29 262.8 15.5 180 700-903 458-666 (694)
231 PRK13541 cytochrome c biogenes 99.9 3.3E-24 7.1E-29 219.7 17.4 154 712-890 14-184 (195)
232 PRK10261 glutathione transport 99.9 1.4E-24 3.1E-29 258.7 17.0 168 712-907 337-536 (623)
233 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.9 1.7E-24 3.6E-29 227.4 15.5 151 712-886 16-195 (238)
234 PRK14256 phosphate ABC transpo 99.9 1.7E-24 3.8E-29 229.6 15.8 167 711-901 16-220 (252)
235 TIGR03269 met_CoM_red_A2 methy 99.9 1.3E-24 2.8E-29 253.2 16.0 172 710-901 11-242 (520)
236 PRK10789 putative multidrug tr 99.9 1.3E-24 2.9E-29 255.9 16.3 178 700-901 316-522 (569)
237 PRK14245 phosphate ABC transpo 99.9 1.9E-24 4.1E-29 229.1 15.7 169 711-901 15-218 (250)
238 PRK09544 znuC high-affinity zi 99.9 2.6E-24 5.7E-29 230.0 16.9 147 711-886 16-178 (251)
239 TIGR02770 nickel_nikD nickel i 99.9 9.4E-25 2E-29 229.0 13.1 151 714-886 1-183 (230)
240 PRK14240 phosphate transporter 99.9 2.2E-24 4.7E-29 228.4 15.9 151 711-886 15-202 (250)
241 COG0444 DppD ABC-type dipeptid 99.9 1.5E-24 3.2E-29 237.7 15.0 173 711-907 17-226 (316)
242 PRK14237 phosphate transporter 99.9 2.4E-24 5.2E-29 231.4 16.4 178 694-901 20-235 (267)
243 cd03253 ABCC_ATM1_transporter 99.9 2.4E-24 5.3E-29 225.6 15.7 167 711-901 13-208 (236)
244 PRK10261 glutathione transport 99.9 1.8E-24 3.9E-29 257.8 16.6 184 694-902 12-243 (623)
245 cd03289 ABCC_CFTR2 The CFTR su 99.9 1.7E-24 3.7E-29 235.0 14.9 161 700-886 5-194 (275)
246 PRK14274 phosphate ABC transpo 99.9 2.5E-24 5.3E-29 229.6 15.8 163 694-886 12-211 (259)
247 TIGR02323 CP_lyasePhnK phospho 99.9 2.5E-24 5.5E-29 228.2 15.8 155 711-887 15-207 (253)
248 cd03369 ABCC_NFT1 Domain 2 of 99.9 3.1E-24 6.6E-29 221.3 15.8 170 700-901 9-196 (207)
249 PRK14270 phosphate ABC transpo 99.9 2.5E-24 5.3E-29 228.4 15.4 166 711-901 16-219 (251)
250 PRK10418 nikD nickel transport 99.9 3.5E-24 7.6E-29 228.1 16.5 164 695-886 5-198 (254)
251 TIGR02204 MsbA_rel ABC transpo 99.9 1.6E-24 3.4E-29 254.3 15.2 180 700-903 340-549 (576)
252 PRK14262 phosphate ABC transpo 99.9 3.1E-24 6.7E-29 227.2 15.6 152 711-887 15-203 (250)
253 COG4619 ABC-type uncharacteriz 99.9 6.1E-25 1.3E-29 222.2 9.5 169 709-906 13-205 (223)
254 PRK10419 nikE nickel transport 99.9 3.6E-24 7.7E-29 230.4 16.0 170 711-902 24-226 (268)
255 TIGR01192 chvA glucan exporter 99.9 1.7E-24 3.6E-29 256.2 14.8 179 700-903 337-544 (585)
256 PRK14260 phosphate ABC transpo 99.9 2.5E-24 5.5E-29 229.8 14.6 175 700-901 10-222 (259)
257 TIGR02633 xylG D-xylose ABC tr 99.9 3.1E-24 6.8E-29 248.7 16.3 169 710-901 12-214 (500)
258 TIGR03269 met_CoM_red_A2 methy 99.9 3.3E-24 7.2E-29 249.8 16.5 167 695-886 280-485 (520)
259 TIGR01842 type_I_sec_PrtD type 99.9 2.9E-24 6.3E-29 251.5 16.0 181 700-903 319-528 (544)
260 PRK14275 phosphate ABC transpo 99.9 3.7E-24 7.9E-29 232.7 15.5 154 711-886 51-238 (286)
261 PRK14251 phosphate ABC transpo 99.9 3.9E-24 8.4E-29 226.6 15.1 161 700-887 7-204 (251)
262 PRK14249 phosphate ABC transpo 99.9 5E-24 1.1E-28 226.0 15.9 151 711-886 16-203 (251)
263 PRK14243 phosphate transporter 99.9 4.4E-24 9.5E-29 229.0 15.4 166 711-901 22-223 (264)
264 PRK10938 putative molybdenum t 99.9 2.4E-24 5.1E-29 249.1 14.4 152 710-885 14-191 (490)
265 PRK09700 D-allose transporter 99.9 2.5E-24 5.4E-29 250.2 14.5 177 694-906 265-480 (510)
266 PRK14257 phosphate ABC transpo 99.9 5.6E-24 1.2E-28 236.3 16.7 179 700-903 83-299 (329)
267 PRK14239 phosphate transporter 99.9 4.6E-24 1E-28 225.8 15.3 153 711-886 17-204 (252)
268 PRK14244 phosphate ABC transpo 99.9 5.1E-24 1.1E-28 225.9 15.6 176 700-902 8-222 (251)
269 PRK14253 phosphate ABC transpo 99.9 5.1E-24 1.1E-28 225.4 15.2 151 711-886 15-201 (249)
270 CHL00131 ycf16 sulfate ABC tra 99.9 9.1E-24 2E-28 223.6 16.9 168 695-890 8-212 (252)
271 PRK10522 multidrug transporter 99.9 5.1E-24 1.1E-28 249.8 16.2 176 700-902 325-523 (547)
272 PLN03130 ABC transporter C fam 99.9 3.3E-24 7.2E-29 277.4 16.0 180 700-903 1240-1447(1622)
273 PRK14271 phosphate ABC transpo 99.9 8.7E-24 1.9E-28 228.7 16.7 160 700-886 24-219 (276)
274 PLN03232 ABC transporter C fam 99.9 2.8E-24 6E-29 277.0 15.0 180 700-903 1237-1444(1495)
275 TIGR01257 rim_protein retinal- 99.9 4.7E-24 1E-28 276.6 17.1 168 692-886 926-1117(2272)
276 cd03237 ABC_RNaseL_inhibitor_d 99.9 4.8E-24 1E-28 227.7 14.1 149 710-888 5-175 (246)
277 PRK14261 phosphate ABC transpo 99.9 7.8E-24 1.7E-28 224.8 15.6 151 711-886 18-205 (253)
278 PRK14255 phosphate ABC transpo 99.9 9.3E-24 2E-28 223.8 15.9 152 711-887 17-205 (252)
279 PRK14272 phosphate ABC transpo 99.9 7.2E-24 1.6E-28 224.4 15.0 154 711-888 16-206 (252)
280 PRK13549 xylose transporter AT 99.9 4.3E-24 9.3E-29 248.2 14.3 180 695-906 260-476 (506)
281 PRK14238 phosphate transporter 99.9 7.9E-24 1.7E-28 228.1 15.3 165 693-886 23-223 (271)
282 cd03230 ABC_DR_subfamily_A Thi 99.9 1.1E-23 2.3E-28 212.4 15.1 127 711-888 12-154 (173)
283 PRK14258 phosphate ABC transpo 99.9 1E-23 2.3E-28 225.5 15.8 162 700-886 10-208 (261)
284 PRK15134 microcin C ABC transp 99.9 6.9E-24 1.5E-28 247.8 15.4 168 711-907 298-498 (529)
285 COG4604 CeuD ABC-type enteroch 99.9 1.4E-24 3.1E-29 224.1 8.5 170 709-906 11-207 (252)
286 PRK14236 phosphate transporter 99.9 1.5E-23 3.2E-28 225.8 16.8 163 694-886 25-224 (272)
287 PRK14265 phosphate ABC transpo 99.9 1.4E-23 3E-28 226.7 16.5 178 694-901 20-233 (274)
288 cd03288 ABCC_SUR2 The SUR doma 99.9 1.4E-23 3E-28 224.1 15.8 183 692-901 17-227 (257)
289 TIGR02633 xylG D-xylose ABC tr 99.9 7.2E-24 1.6E-28 245.7 14.6 167 711-906 272-474 (500)
290 PRK14263 phosphate ABC transpo 99.9 1.9E-23 4.2E-28 224.1 16.4 167 710-901 19-221 (261)
291 cd03229 ABC_Class3 This class 99.9 1.6E-23 3.4E-28 212.1 14.8 134 711-892 12-164 (178)
292 PRK15134 microcin C ABC transp 99.9 1.5E-23 3.2E-28 245.0 16.8 153 712-886 22-214 (529)
293 PRK14264 phosphate ABC transpo 99.9 2.1E-23 4.5E-28 228.9 16.6 163 694-886 45-256 (305)
294 PTZ00265 multidrug resistance 99.9 1E-23 2.2E-28 270.7 16.2 180 700-903 385-654 (1466)
295 cd03247 ABCC_cytochrome_bd The 99.9 1.9E-23 4.1E-28 211.2 14.7 139 712-901 15-169 (178)
296 PRK03695 vitamin B12-transport 99.9 2E-23 4.4E-28 222.0 15.5 149 714-886 11-190 (248)
297 TIGR01194 cyc_pep_trnsptr cycl 99.9 1.4E-23 2.9E-28 246.9 15.6 179 700-903 340-545 (555)
298 COG1123 ATPase components of v 99.9 9.2E-24 2E-28 245.1 13.8 189 694-907 5-227 (539)
299 PRK14246 phosphate ABC transpo 99.9 2.1E-23 4.6E-28 223.3 15.6 153 710-886 21-209 (257)
300 PRK09580 sufC cysteine desulfu 99.9 3E-23 6.6E-28 218.9 16.4 159 711-890 13-206 (248)
301 cd03246 ABCC_Protease_Secretio 99.9 2.5E-23 5.5E-28 209.7 14.8 136 701-889 4-156 (173)
302 PRK14252 phosphate ABC transpo 99.9 3.6E-23 7.8E-28 221.6 16.6 162 695-886 17-217 (265)
303 COG4161 ArtP ABC-type arginine 99.9 1.1E-23 2.3E-28 212.0 11.4 165 695-887 3-199 (242)
304 PRK10762 D-ribose transporter 99.9 1.5E-23 3.3E-28 243.4 14.3 164 714-906 267-466 (501)
305 PRK11288 araG L-arabinose tran 99.9 1.5E-23 3.2E-28 243.5 14.1 165 713-906 267-467 (501)
306 COG4987 CydC ABC-type transpor 99.9 9.9E-24 2.1E-28 241.8 11.9 179 700-903 339-547 (573)
307 cd03215 ABC_Carb_Monos_II This 99.9 3.5E-23 7.6E-28 210.2 14.6 128 714-888 15-163 (182)
308 PRK14266 phosphate ABC transpo 99.9 4.2E-23 9.1E-28 218.6 15.7 155 711-887 15-203 (250)
309 cd03232 ABC_PDR_domain2 The pl 99.9 5.5E-23 1.2E-27 210.7 15.6 148 712-901 20-182 (192)
310 TIGR00957 MRP_assoc_pro multi 99.9 2.4E-23 5.2E-28 268.8 16.0 179 700-903 1287-1494(1522)
311 PLN03211 ABC transporter G-25; 99.9 3.5E-23 7.7E-28 248.4 16.0 171 710-903 79-282 (659)
312 TIGR01257 rim_protein retinal- 99.9 3.1E-23 6.8E-28 269.1 16.3 167 694-886 1937-2127(2272)
313 cd03223 ABCD_peroxisomal_ALDP 99.9 9.1E-23 2E-27 205.1 15.7 132 711-898 13-157 (166)
314 PRK15064 ABC transporter ATP-b 99.9 3.9E-23 8.5E-28 241.5 15.0 145 710-887 12-210 (530)
315 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.9 3.9E-23 8.6E-28 216.7 13.4 146 710-886 33-199 (224)
316 COG1119 ModF ABC-type molybden 99.9 2.7E-23 5.9E-28 220.6 12.1 181 700-904 34-249 (257)
317 PRK10938 putative molybdenum t 99.9 6.1E-23 1.3E-27 237.4 15.9 166 694-887 260-460 (490)
318 PTZ00243 ABC transporter; Prov 99.9 4.1E-23 9E-28 266.7 15.8 179 700-903 1311-1519(1560)
319 TIGR03771 anch_rpt_ABC anchore 99.9 7.6E-23 1.7E-27 214.2 14.3 154 724-901 8-186 (223)
320 cd03213 ABCG_EPDR ABCG transpo 99.9 1E-22 2.2E-27 209.3 14.7 136 712-889 22-171 (194)
321 PRK11819 putative ABC transpor 99.9 7.3E-23 1.6E-27 240.9 15.6 154 695-886 7-217 (556)
322 PRK15439 autoinducer 2 ABC tra 99.9 5.5E-23 1.2E-27 239.5 13.8 164 714-906 278-474 (510)
323 cd03228 ABCC_MRP_Like The MRP 99.9 1.1E-22 2.3E-27 204.8 13.8 134 713-900 16-166 (171)
324 TIGR00955 3a01204 The Eye Pigm 99.9 7.9E-23 1.7E-27 243.6 14.6 171 710-903 36-242 (617)
325 cd03214 ABC_Iron-Siderophores_ 99.9 9.5E-23 2.1E-27 206.7 12.8 128 711-888 11-157 (180)
326 cd03291 ABCC_CFTR1 The CFTR su 99.9 2.8E-22 6.1E-27 218.5 17.3 143 712-887 50-217 (282)
327 PRK15064 ABC transporter ATP-b 99.9 1.3E-22 2.9E-27 237.1 15.3 155 694-886 319-492 (530)
328 PF00005 ABC_tran: ABC transpo 99.9 3.4E-23 7.3E-28 198.7 8.3 115 715-844 1-137 (137)
329 COG4618 ArpD ABC-type protease 99.9 1.4E-22 3.1E-27 230.9 14.7 181 700-903 337-546 (580)
330 PRK13409 putative ATPase RIL; 99.9 2E-22 4.3E-27 239.3 15.8 170 694-906 340-525 (590)
331 cd03217 ABC_FeS_Assembly ABC-t 99.9 2.3E-22 5E-27 207.4 14.2 131 711-887 12-162 (200)
332 TIGR01271 CFTR_protein cystic 99.9 1.7E-22 3.7E-27 260.4 16.4 178 700-903 1220-1426(1490)
333 TIGR03719 ABC_ABC_ChvD ATP-bin 99.9 1.6E-22 3.5E-27 237.7 14.7 143 711-887 17-216 (552)
334 PRK10535 macrolide transporter 99.9 5.2E-22 1.1E-26 237.9 18.8 169 712-903 21-218 (648)
335 PRK13546 teichoic acids export 99.9 5.3E-22 1.1E-26 214.2 16.8 147 710-888 35-202 (264)
336 PRK10982 galactose/methyl gala 99.9 3.5E-22 7.5E-27 231.4 14.6 178 694-907 250-463 (491)
337 TIGR00954 3a01203 Peroxysomal 99.9 5.8E-22 1.2E-26 238.0 16.6 169 700-903 454-653 (659)
338 TIGR03719 ABC_ABC_ChvD ATP-bin 99.9 5.6E-22 1.2E-26 233.2 16.1 169 694-906 322-511 (552)
339 PRK11147 ABC transporter ATPas 99.9 6.4E-22 1.4E-26 236.5 15.8 171 694-902 319-511 (635)
340 PRK11819 putative ABC transpor 99.9 8.2E-22 1.8E-26 232.1 16.5 155 694-886 324-499 (556)
341 TIGR00956 3a01205 Pleiotropic 99.9 8.5E-22 1.8E-26 252.5 17.2 169 711-902 775-977 (1394)
342 COG5265 ATM1 ABC-type transpor 99.9 1.7E-22 3.7E-27 226.3 9.0 211 666-904 233-473 (497)
343 PLN03232 ABC transporter C fam 99.9 3.7E-22 8.1E-27 257.5 12.8 173 700-903 617-814 (1495)
344 COG4133 CcmA ABC-type transpor 99.9 7.1E-22 1.5E-26 203.0 12.2 130 707-845 10-160 (209)
345 COG4136 ABC-type uncharacteriz 99.9 1.5E-21 3.2E-26 194.9 14.0 155 710-886 13-192 (213)
346 PRK15177 Vi polysaccharide exp 99.9 6.6E-22 1.4E-26 206.4 12.1 141 713-886 1-160 (213)
347 PLN02847 triacylglycerol lipas 99.9 1.2E-21 2.6E-26 227.6 13.8 196 68-314 118-319 (633)
348 PLN03130 ABC transporter C fam 99.9 6.7E-22 1.4E-26 256.2 12.9 172 700-903 617-814 (1622)
349 COG4674 Uncharacterized ABC-ty 99.9 4E-22 8.6E-27 205.8 8.6 127 710-845 16-177 (249)
350 cd03236 ABC_RNaseL_inhibitor_d 99.9 1.8E-21 3.9E-26 209.2 13.1 169 712-905 14-216 (255)
351 PLN03140 ABC transporter G fam 99.9 2.5E-21 5.5E-26 248.4 16.5 169 711-902 892-1094(1470)
352 PRK10636 putative ABC transpor 99.9 3.2E-21 6.9E-26 230.8 15.7 170 694-901 312-500 (638)
353 COG4172 ABC-type uncharacteriz 99.9 2.2E-21 4.8E-26 216.3 12.8 127 709-845 297-456 (534)
354 PRK13545 tagH teichoic acids e 99.9 5.6E-21 1.2E-25 222.7 15.9 156 700-887 24-201 (549)
355 COG4608 AppF ABC-type oligopep 99.9 3.3E-21 7.2E-26 207.6 12.9 159 695-907 5-182 (268)
356 TIGR00956 3a01205 Pleiotropic 99.8 5.3E-21 1.2E-25 245.2 15.1 174 711-903 73-286 (1394)
357 cd03216 ABC_Carb_Monos_I This 99.8 1.1E-20 2.4E-25 189.5 14.2 121 701-889 4-142 (163)
358 PRK13409 putative ATPase RIL; 99.8 3.3E-21 7.1E-26 229.0 11.5 148 712-886 87-268 (590)
359 KOG0061 Transporter, ABC super 99.8 9.6E-21 2.1E-25 225.8 14.8 169 711-903 42-246 (613)
360 PRK10636 putative ABC transpor 99.8 1.1E-20 2.5E-25 226.1 15.3 145 710-888 12-205 (638)
361 TIGR00957 MRP_assoc_pro multi 99.8 2.1E-20 4.6E-25 241.7 18.0 173 700-903 639-836 (1522)
362 COG1101 PhnK ABC-type uncharac 99.8 3.3E-21 7.1E-26 201.5 8.2 184 697-907 4-221 (263)
363 PLN03140 ABC transporter G fam 99.8 7.4E-21 1.6E-25 244.1 12.5 171 711-903 177-413 (1470)
364 PLN03073 ABC transporter F fam 99.8 2.9E-20 6.3E-25 225.1 14.9 152 700-887 511-682 (718)
365 PRK11147 ABC transporter ATPas 99.8 7E-20 1.5E-24 219.1 15.8 150 710-889 14-213 (635)
366 COG1134 TagH ABC-type polysacc 99.8 2.9E-20 6.3E-25 197.6 10.9 163 710-902 38-221 (249)
367 TIGR01271 CFTR_protein cystic 99.8 5.5E-20 1.2E-24 237.4 15.2 160 712-903 439-622 (1490)
368 PTZ00243 ABC transporter; Prov 99.8 8.1E-20 1.7E-24 236.5 16.5 162 710-903 671-856 (1560)
369 COG4172 ABC-type uncharacteriz 99.8 1.1E-19 2.4E-24 203.0 12.9 204 694-904 6-250 (534)
370 cd00741 Lipase Lipase. Lipase 99.8 1.6E-19 3.5E-24 178.1 12.0 122 209-341 1-129 (153)
371 COG4167 SapF ABC-type antimicr 99.8 2.1E-19 4.5E-24 184.2 11.8 142 695-845 5-179 (267)
372 COG4586 ABC-type uncharacteriz 99.8 4.2E-20 9.1E-25 198.6 7.1 168 712-906 37-228 (325)
373 KOG0054 Multidrug resistance-a 99.8 2.4E-19 5.3E-24 225.2 14.9 186 690-903 1134-1348(1381)
374 cd03222 ABC_RNaseL_inhibitor T 99.8 3.9E-19 8.5E-24 182.3 13.5 125 710-905 11-149 (177)
375 cd03238 ABC_UvrA The excision 99.8 7.8E-19 1.7E-23 179.9 13.8 138 711-901 7-161 (176)
376 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.8 7.7E-19 1.7E-23 173.3 12.7 99 712-886 13-124 (144)
377 COG0488 Uup ATPase components 99.8 7.2E-19 1.6E-23 206.3 13.9 151 710-894 14-215 (530)
378 COG4778 PhnL ABC-type phosphon 99.8 3.8E-19 8.3E-24 180.7 9.7 157 695-873 5-197 (235)
379 KOG0059 Lipid exporter ABCA1 a 99.8 3.2E-19 6.8E-24 220.6 10.3 182 693-907 563-770 (885)
380 KOG0054 Multidrug resistance-a 99.8 8.4E-19 1.8E-23 220.4 12.6 330 501-903 353-717 (1381)
381 COG4107 PhnK ABC-type phosphon 99.8 1.9E-18 4.2E-23 176.1 12.7 186 693-907 5-224 (258)
382 cd00267 ABC_ATPase ABC (ATP-bi 99.8 3.5E-18 7.6E-23 169.2 14.1 113 711-889 11-140 (157)
383 COG0488 Uup ATPase components 99.8 4.7E-18 1E-22 199.5 14.8 167 691-894 318-501 (530)
384 COG0396 sufC Cysteine desulfur 99.7 8.3E-18 1.8E-22 177.7 13.2 163 712-895 17-210 (251)
385 PLN03073 ABC transporter F fam 99.7 5.8E-18 1.3E-22 205.2 9.5 172 693-887 176-399 (718)
386 cd03278 ABC_SMC_barmotin Barmo 99.7 1.2E-17 2.7E-22 173.1 9.3 140 716-892 14-179 (197)
387 cd03273 ABC_SMC2_euk Eukaryoti 99.7 3.7E-17 8.1E-22 174.3 9.5 148 724-895 27-235 (251)
388 cd03270 ABC_UvrA_I The excisio 99.7 1.5E-16 3.3E-21 167.9 12.8 173 711-901 7-211 (226)
389 cd03272 ABC_SMC3_euk Eukaryoti 99.7 1.2E-16 2.6E-21 168.4 9.3 172 709-905 12-237 (243)
390 COG4138 BtuD ABC-type cobalami 99.6 1.1E-16 2.5E-21 163.4 5.5 146 715-885 15-187 (248)
391 KOG0065 Pleiotropic drug resis 99.6 3.8E-16 8.3E-21 193.6 9.2 171 710-901 802-1004(1391)
392 COG4178 ABC-type uncharacteriz 99.6 1.1E-15 2.3E-20 180.4 12.4 145 693-871 391-558 (604)
393 cd03274 ABC_SMC4_euk Eukaryoti 99.6 7.8E-17 1.7E-21 169.1 2.2 155 710-900 15-201 (212)
394 cd03240 ABC_Rad50 The catalyti 99.6 7.1E-16 1.5E-20 160.7 9.0 152 715-900 15-194 (204)
395 cd03271 ABC_UvrA_II The excisi 99.6 2.2E-15 4.8E-20 163.4 10.6 169 713-901 9-244 (261)
396 KOG0927 Predicted transporter 99.6 1.8E-15 4E-20 174.3 6.4 158 700-891 392-568 (614)
397 COG4615 PvdE ABC-type sideroph 99.6 1.3E-14 2.7E-19 162.5 10.9 173 700-901 325-521 (546)
398 KOG0066 eIF2-interacting prote 99.5 1.3E-14 2.8E-19 163.2 10.4 168 698-900 587-772 (807)
399 COG1245 Predicted ATPase, RNas 99.5 2.9E-14 6.2E-19 161.9 12.1 159 709-906 346-527 (591)
400 cd03279 ABC_sbcCD SbcCD and ot 99.5 1.5E-14 3.3E-19 151.0 9.2 149 716-892 18-196 (213)
401 KOG0060 Long-chain acyl-CoA tr 99.5 3.3E-13 7E-18 156.9 14.1 136 693-845 432-600 (659)
402 COG1129 MglA ABC-type sugar tr 99.5 1.9E-13 4.2E-18 158.8 12.2 167 714-909 274-475 (500)
403 cd03275 ABC_SMC1_euk Eukaryoti 99.4 3.3E-13 7.1E-18 144.1 8.8 153 724-899 24-229 (247)
404 cd03276 ABC_SMC6_euk Eukaryoti 99.4 1.7E-12 3.7E-17 135.0 11.0 128 715-876 12-161 (198)
405 KOG0062 ATPase component of AB 99.4 1E-12 2.2E-17 151.3 9.5 164 700-894 365-544 (582)
406 PRK00635 excinuclease ABC subu 99.3 3.8E-12 8.3E-17 164.9 13.8 99 782-901 761-884 (1809)
407 PRK00349 uvrA excinuclease ABC 99.3 4.9E-12 1.1E-16 157.4 11.2 81 806-901 810-905 (943)
408 cd03280 ABC_MutS2 MutS2 homolo 99.3 6.6E-12 1.4E-16 130.1 8.9 118 715-893 17-155 (200)
409 COG4170 SapD ABC-type antimicr 99.3 3.2E-12 6.9E-17 134.2 6.4 176 709-905 17-229 (330)
410 KOG0064 Peroxisomal long-chain 99.3 8E-12 1.7E-16 144.0 9.8 119 710-845 493-642 (728)
411 KOG2355 Predicted ABC-type tra 99.3 2.1E-11 4.6E-16 127.9 11.9 137 692-844 11-176 (291)
412 cd03283 ABC_MutS-like MutS-lik 99.3 7.9E-12 1.7E-16 130.4 7.1 129 712-888 14-147 (199)
413 KOG0927 Predicted transporter 99.2 2.8E-11 6E-16 140.3 9.1 130 710-845 86-251 (614)
414 KOG0065 Pleiotropic drug resis 99.2 3.8E-11 8.3E-16 150.0 10.1 171 711-901 127-335 (1391)
415 COG3845 ABC-type uncharacteriz 99.2 2.2E-10 4.7E-15 132.2 13.8 186 692-910 255-478 (501)
416 cd03277 ABC_SMC5_euk Eukaryoti 99.2 9E-11 2E-15 123.7 9.7 57 817-886 118-189 (213)
417 COG1245 Predicted ATPase, RNas 99.2 1.5E-11 3.1E-16 140.3 3.8 181 724-937 102-320 (591)
418 TIGR00630 uvra excinuclease AB 99.1 9.1E-11 2E-15 146.0 10.2 81 806-901 808-903 (924)
419 KOG0062 ATPase component of AB 99.1 1.1E-10 2.3E-15 134.9 9.4 130 693-845 79-228 (582)
420 COG2401 ABC-type ATPase fused 99.1 2.2E-10 4.9E-15 129.6 11.5 155 711-892 395-571 (593)
421 KOG0063 RNAse L inhibitor, ABC 99.1 2.3E-10 5E-15 129.8 8.1 162 708-907 345-529 (592)
422 cd00820 PEPCK_HprK Phosphoenol 99.0 4.7E-10 1E-14 107.4 6.9 70 712-798 2-78 (107)
423 cd03243 ABC_MutS_homologs The 99.0 3.8E-10 8.2E-15 117.1 5.9 129 712-894 18-156 (202)
424 cd03282 ABC_MSH4_euk MutS4 hom 98.9 2.3E-09 4.9E-14 112.7 9.5 127 711-892 15-154 (204)
425 PF11187 DUF2974: Protein of u 98.9 2.7E-09 5.8E-14 114.0 9.0 77 226-314 79-156 (224)
426 COG3675 Predicted lipase [Lipi 98.9 5.5E-10 1.2E-14 121.5 1.2 163 132-327 92-261 (332)
427 cd03239 ABC_SMC_head The struc 98.8 1.3E-08 2.7E-13 104.8 9.4 54 826-893 95-162 (178)
428 cd03241 ABC_RecN RecN ATPase i 98.8 3.1E-08 6.8E-13 108.0 12.3 31 715-745 12-44 (276)
429 cd03285 ABC_MSH2_euk MutS2 hom 98.7 1.7E-08 3.7E-13 107.3 7.3 33 711-743 16-51 (222)
430 TIGR02858 spore_III_AA stage I 98.7 3.3E-08 7.1E-13 108.5 9.0 59 724-786 113-176 (270)
431 cd03284 ABC_MutS1 MutS1 homolo 98.7 4.5E-08 9.8E-13 103.6 9.4 72 712-800 18-91 (216)
432 PRK00635 excinuclease ABC subu 98.7 8.7E-08 1.9E-12 125.4 12.5 81 808-903 1681-1776(1809)
433 TIGR01069 mutS2 MutS2 family p 98.7 5.2E-08 1.1E-12 120.2 9.7 119 718-890 314-446 (771)
434 cd03227 ABC_Class2 ABC-type Cl 98.7 3.1E-08 6.8E-13 99.8 6.3 112 724-896 23-148 (162)
435 COG0178 UvrA Excinuclease ATPa 98.7 6.2E-08 1.3E-12 117.2 9.7 82 806-902 803-898 (935)
436 smart00534 MUTSac ATPase domai 98.6 2E-08 4.3E-13 103.3 3.3 112 724-891 1-124 (185)
437 COG3675 Predicted lipase [Lipi 98.6 2.5E-08 5.4E-13 108.9 3.8 137 130-327 182-322 (332)
438 cd03287 ABC_MSH3_euk MutS3 hom 98.4 7.1E-07 1.5E-11 95.4 9.8 44 712-758 18-65 (222)
439 PTZ00132 GTP-binding nuclear p 98.4 1.5E-07 3.3E-12 97.9 3.0 23 724-746 11-34 (215)
440 cd03281 ABC_MSH5_euk MutS5 hom 98.4 1.3E-06 2.7E-11 92.6 9.8 55 713-776 17-74 (213)
441 TIGR03238 dnd_assoc_3 dnd syst 98.3 1.3E-07 2.7E-12 110.5 1.1 47 712-763 19-69 (504)
442 PF02463 SMC_N: RecF/RecN/SMC 98.3 6.8E-07 1.5E-11 93.3 6.4 56 825-895 136-205 (220)
443 cd03242 ABC_RecF RecF is a rec 98.3 2.3E-06 5.1E-11 93.2 10.6 31 716-746 13-45 (270)
444 PRK00409 recombination and DNA 98.3 1.6E-06 3.5E-11 107.4 9.9 123 714-889 317-450 (782)
445 KOG0066 eIF2-interacting prote 98.1 1.8E-06 3.8E-11 98.9 4.5 128 710-845 275-442 (807)
446 cd01130 VirB11-like_ATPase Typ 98.1 4.2E-06 9E-11 86.3 6.7 69 724-800 27-98 (186)
447 PRK00349 uvrA excinuclease ABC 98.0 7.7E-06 1.7E-10 103.0 6.7 82 804-901 468-563 (943)
448 KOG0063 RNAse L inhibitor, ABC 98.0 3.1E-06 6.7E-11 97.1 2.7 110 724-845 102-243 (592)
449 TIGR00630 uvra excinuclease AB 98.0 1E-05 2.2E-10 101.8 7.4 83 804-901 466-561 (924)
450 PRK07196 fliI flagellum-specif 97.9 1.6E-05 3.5E-10 92.7 6.3 78 711-797 142-235 (434)
451 COG3910 Predicted ATPase [Gene 97.9 3E-05 6.4E-10 81.6 7.3 61 818-892 122-191 (233)
452 PRK06002 fliI flagellum-specif 97.9 3.6E-05 7.9E-10 90.1 8.9 64 711-778 152-229 (450)
453 PRK09825 idnK D-gluconate kina 97.9 8.5E-06 1.8E-10 84.0 3.2 63 724-798 5-70 (176)
454 PRK07721 fliI flagellum-specif 97.8 0.00017 3.6E-09 84.6 13.8 62 711-776 145-221 (438)
455 KOG4540 Putative lipase essent 97.7 2.1E-05 4.5E-10 86.4 4.1 39 225-279 269-307 (425)
456 COG5153 CVT17 Putative lipase 97.7 2.1E-05 4.5E-10 86.4 4.1 39 225-279 269-307 (425)
457 PRK09270 nucleoside triphospha 97.7 2.3E-05 5E-10 83.3 4.3 50 724-776 35-88 (229)
458 PRK06995 flhF flagellar biosyn 97.7 4.6E-05 1E-09 90.0 6.6 78 724-826 258-343 (484)
459 cd03286 ABC_MSH6_euk MutS6 hom 97.7 9.8E-05 2.1E-09 79.0 8.0 36 711-746 16-54 (218)
460 cd02023 UMPK Uridine monophosp 97.7 3.1E-05 6.7E-10 80.0 3.9 23 724-746 1-23 (198)
461 PRK06315 type III secretion sy 97.6 9.1E-05 2E-09 86.7 7.1 110 711-827 151-293 (442)
462 TIGR00554 panK_bact pantothena 97.6 4.2E-05 9.1E-10 85.1 3.7 34 724-760 64-99 (290)
463 PRK10078 ribose 1,5-bisphospho 97.6 6.8E-05 1.5E-09 77.2 4.7 47 724-776 4-54 (186)
464 PRK08149 ATP synthase SpaL; Va 97.5 0.00019 4.2E-09 83.8 7.9 62 711-776 138-213 (428)
465 PRK01889 GTPase RsgA; Reviewed 97.5 0.00014 3E-09 82.9 6.5 75 715-798 185-263 (356)
466 TIGR00235 udk uridine kinase. 97.4 8.4E-05 1.8E-09 77.8 2.7 23 724-746 8-30 (207)
467 PRK10416 signal recognition pa 97.4 0.00016 3.4E-09 81.5 4.5 65 724-796 116-190 (318)
468 PLN02318 phosphoribulokinase/u 97.3 0.00019 4.1E-09 86.4 4.2 61 724-796 67-127 (656)
469 PRK11545 gntK gluconate kinase 97.3 7.8E-05 1.7E-09 75.7 0.9 58 728-797 1-61 (163)
470 TIGR02788 VirB11 P-type DNA tr 97.2 0.00033 7.3E-09 78.2 5.0 39 718-759 137-178 (308)
471 TIGR02546 III_secr_ATP type II 97.2 0.00046 9.9E-09 80.6 6.3 72 711-786 132-216 (422)
472 TIGR00767 rho transcription te 97.2 0.00039 8.4E-09 80.6 5.4 81 656-746 98-192 (415)
473 PRK03846 adenylylsulfate kinas 97.2 0.00025 5.4E-09 73.8 3.4 50 724-776 26-76 (198)
474 TIGR02322 phosphon_PhnN phosph 97.2 0.00068 1.5E-08 68.8 6.3 31 724-758 3-33 (179)
475 PRK00300 gmk guanylate kinase; 97.2 0.00031 6.8E-09 72.6 3.7 23 724-746 7-29 (205)
476 TIGR02524 dot_icm_DotB Dot/Icm 97.2 0.00029 6.3E-09 80.6 3.8 52 724-778 136-193 (358)
477 TIGR00606 rad50 rad50. This fa 97.1 0.00043 9.3E-09 90.7 5.7 56 718-776 24-86 (1311)
478 cd01136 ATPase_flagellum-secre 97.1 0.00068 1.5E-08 76.8 6.5 46 711-760 56-104 (326)
479 PRK09099 type III secretion sy 97.1 0.0012 2.6E-08 77.5 8.2 46 711-760 150-198 (441)
480 cd02025 PanK Pantothenate kina 97.1 0.00028 6E-09 75.4 2.6 23 724-746 1-23 (220)
481 cd04155 Arl3 Arl3 subfamily. 97.1 0.00063 1.4E-08 67.5 4.9 31 724-754 16-47 (173)
482 PF13555 AAA_29: P-loop contai 97.1 0.00055 1.2E-08 60.2 3.8 30 717-746 16-47 (62)
483 cd01128 rho_factor Transcripti 97.0 0.0011 2.5E-08 72.4 6.8 23 724-746 18-40 (249)
484 PRK09862 putative ATP-dependen 97.0 0.00045 9.7E-09 82.3 4.0 51 710-763 195-248 (506)
485 cd00879 Sar1 Sar1 subfamily. 97.0 0.00036 7.7E-09 70.7 2.5 31 714-744 9-41 (190)
486 PRK07960 fliI flagellum-specif 97.0 0.00074 1.6E-08 79.4 5.4 65 711-779 162-239 (455)
487 cd01854 YjeQ_engC YjeQ/EngC. 97.0 0.00045 9.8E-09 76.5 3.5 42 715-759 152-195 (287)
488 cd02026 PRK Phosphoribulokinas 97.0 0.00058 1.3E-08 75.4 4.1 49 724-776 1-52 (273)
489 PRK07594 type III secretion sy 97.0 0.00094 2E-08 78.2 5.6 47 711-761 142-191 (433)
490 PLN02796 D-glycerate 3-kinase 96.9 0.00083 1.8E-08 76.6 4.4 49 712-763 79-141 (347)
491 cd04159 Arl10_like Arl10-like 96.9 0.00046 9.9E-09 66.0 2.0 22 725-746 2-23 (159)
492 TIGR00101 ureG urease accessor 96.9 0.00087 1.9E-08 70.6 4.2 50 724-777 3-56 (199)
493 TIGR03497 FliI_clade2 flagella 96.9 0.0017 3.6E-08 75.9 6.6 47 711-761 124-173 (413)
494 COG0178 UvrA Excinuclease ATPa 96.9 0.002 4.4E-08 79.3 7.4 85 803-902 459-556 (935)
495 PF13476 AAA_23: AAA domain; P 96.8 0.0013 2.8E-08 66.3 4.7 32 715-746 10-43 (202)
496 cd04104 p47_IIGP_like p47 (47- 96.8 0.00099 2.1E-08 69.3 3.9 33 724-759 3-35 (197)
497 PRK05922 type III secretion sy 96.8 0.0033 7.2E-08 73.8 8.3 46 711-760 144-192 (434)
498 TIGR02903 spore_lon_C ATP-depe 96.8 0.0018 3.9E-08 79.0 6.4 90 724-846 177-278 (615)
499 TIGR03498 FliI_clade3 flagella 96.8 0.0018 3.9E-08 75.7 5.8 46 711-760 127-175 (418)
500 PRK04863 mukB cell division pr 96.7 0.0015 3.3E-08 86.1 5.7 42 716-760 19-62 (1486)
No 1
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.6e-42 Score=362.81 Aligned_cols=208 Identities=20% Similarity=0.219 Sum_probs=183.0
Q ss_pred CCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccchhhhcCceEEEcCCCCCCccccc
Q 001709 710 DFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADDQEGIAGGLCYCDSAGVNLQELTM 786 (1022)
Q Consensus 710 ~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~~~~lr~~IGyV~Q~~~~~~~lTV 786 (1022)
+...||+||||+|. +|+||||||||||||||+|+||. +|++|+|.++|..+ ......+|||||++.+|||+||
T Consensus 14 ~~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~---~p~~G~V~~~g~~v-~~p~~~~~~vFQ~~~LlPW~Tv 89 (248)
T COG1116 14 GGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLE---KPTSGEVLLDGRPV-TGPGPDIGYVFQEDALLPWLTV 89 (248)
T ss_pred CceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCC---CCCCceEEECCccc-CCCCCCEEEEeccCcccchhhH
Confidence 34889999999999 99999999999999999999999 99999999999776 5567889999997777999999
Q ss_pred cccchHHHHhccccc-------hHHHHHHHH-HhcCCccccCCCcCCch-HHHHHHHHH---------hhhccccCCChh
Q 001709 787 EAARFKDEMWMGIRD-------LSRKTDLIV-LVHNLSHKIPRYNYSSA-SGQQQPALS---------LLLNEAKSLGIP 848 (1022)
Q Consensus 787 ~~~~~~ENI~~g~~~-------~~~~v~~~L-~v~gL~~~~~r~~~~LS-GqrQRvaIA---------LLLDEPTSad~~ 848 (1022)
.|||.|+... ..++++++| .| ||.++.+++|++|| ||||||||| |||||||+|
T Consensus 90 -----~~NV~l~l~~~~~~~~e~~~~a~~~L~~V-gL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgA--- 160 (248)
T COG1116 90 -----LDNVALGLELRGKSKAEARERAKELLELV-GLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGA--- 160 (248)
T ss_pred -----HhhheehhhccccchHhHHHHHHHHHHHc-CCcchhhcCccccChHHHHHHHHHHHHhcCCCEEEEcCCcch---
Confidence 9999998862 345788999 88 99999999999999 999999999 999999997
Q ss_pred HHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCCcccccCcccccccCCCCCCCCCCCCCceee--ecccccc
Q 001709 849 WVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCPYVMPGAVSASLSWGASGGDSDGRSGAQKLL--HAPINLV 926 (1022)
Q Consensus 849 ~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~~V~~~~~~a~~l~~~~~~~~~~~~~~~~i~--~~pi~l~ 926 (1022)
||+.+|..+.+.+++.|+++..|+++|+ |+++||++++||+.+. ..+|..+ ..++++
T Consensus 161 ----------LDalTR~~lq~~l~~lw~~~~~TvllVT------Hdi~EAv~LsdRivvl----~~~P~~i~~~~~i~l- 219 (248)
T COG1116 161 ----------LDALTREELQDELLRLWEETRKTVLLVT------HDVDEAVYLADRVVVL----SNRPGRIGEELEIDL- 219 (248)
T ss_pred ----------hhHHHHHHHHHHHHHHHHhhCCEEEEEe------CCHHHHHhhhCEEEEe----cCCCcceeeEEecCC-
Confidence 8999999999999999999988888887 9999999999999984 4444444 344444
Q ss_pred cCCCCCCCCcccchhHHHHHHHHHHHHhhc
Q 001709 927 WRPFQRKDNILPVEGINSLGQLVHRVLRTH 956 (1022)
Q Consensus 927 ~~pf~~~~~~~~~eg~~~L~~~v~~~L~~~ 956 (1022)
|.+| ++..+.|.+++++++..|...
T Consensus 220 --~rpR---~~~~~~f~~l~~~i~~~L~~~ 244 (248)
T COG1116 220 --PRPR---IRGDPEFLELREELLEELREE 244 (248)
T ss_pred --CCCc---cccChHHHHHHHHHHHHHhhh
Confidence 4344 788999999999999998654
No 2
>PLN02934 triacylglycerol lipase
Probab=100.00 E-value=2.8e-38 Score=361.01 Aligned_cols=194 Identities=24% Similarity=0.286 Sum_probs=148.0
Q ss_pred HHHHHhhcccccCCc--------------ceeehccccccccccCcEEEeeccCCCCCCCCceeeecccCCeEEEEEcCC
Q 001709 77 LCCMVLSECVYKKPV--------------IEIVRAVNKFKADFGGQIVSLERVQPSSDHVPHRYLLAEAGDTLFASFIGT 142 (1022)
Q Consensus 77 l~c~~aSecaY~~p~--------------~elv~~~N~f~~d~~gqI~~~~~vq~s~Dh~~~rylvae~~~~IVVAFRGT 142 (1022)
-+|+|||..+|+++. ...+.|||+|+.+..+|.+...+. .++.+.||||||||
T Consensus 164 ~l~imAsk~aYen~~~v~~vv~~~w~m~f~~~~~~wn~~~~~~~TqaFi~~Dk-------------~~d~~~IVVAFRGT 230 (515)
T PLN02934 164 DLCIMASKLAYENAKVVENVVDHHWKMHFVAFYNCWNDFQKQMSTQVFIFCDK-------------PKDANLIVISFRGT 230 (515)
T ss_pred HHHHHHHHHHhccHHHHHHHhcccceeeeeeehhhhhhccccCCceEEEEEcc-------------ccCCceEEEEECCC
Confidence 479999999999876 367889999988777776554422 13457999999999
Q ss_pred C--CchhhhhhccccccccccccchhhhhhhccccchhhhhccCCCCCCCCCCCCCcccCCCCCCcccHhHHHHHhc---
Q 001709 143 K--QYKDVMTDANILQGAIFHEDAIEDMEGIELGESKQAKEQKGNGENRWNPLEKPRQLKDKPKPAAHRGFLARAKG--- 217 (1022)
Q Consensus 143 ~--s~~DwitDl~~~q~~~f~~~~l~~~~~~~a~~~~~~~~q~g~~~~~g~~~~~~k~~~~~~~~~VH~GFl~a~~~--- 217 (1022)
+ +..||+||+++.+..+ +..|+||.||+++|..
T Consensus 231 ~p~s~~dWiTDldfs~~~~------------------------------------------p~~gkVH~GF~~A~~l~~~ 268 (515)
T PLN02934 231 EPFDADDWGTDFDYSWYEI------------------------------------------PKVGKVHMGFLEAMGLGNR 268 (515)
T ss_pred CcCCHHHHhhccCccccCC------------------------------------------CCCCeecHHHHHHHhhhcc
Confidence 8 5799999999975432 1246899999998852
Q ss_pred ---------C-----------------------------hhHHHHHHHhcCCCeEEEeccChhHHHHHHHHHHHHHHHhh
Q 001709 218 ---------I-----------------------------PALELYRLAQKKKRKLVLCGHSLGGAVAALATLAILRVVAA 259 (1022)
Q Consensus 218 ---------I-----------------------------~~~~l~~l~~~p~ykLVvTGHSLGGALAtLAAl~LLr~~~~ 259 (1022)
+ ...+...+++||+|+|++||||||||+|+|+|+.+....
T Consensus 269 ~~~~tf~~~l~~~~~~~~~~~~~~~~~~~~~~~~Ay~~v~~~lk~ll~~~p~~kIvVTGHSLGGALAtLaA~~L~l~~-- 346 (515)
T PLN02934 269 DDTTTFQTSLQTKATSELKEEESKKNLLEMVERSAYYAVRSKLKSLLKEHKNAKFVVTGHSLGGALAILFPTVLVLQE-- 346 (515)
T ss_pred ccccchhhhhhhccccccccccccccccccchhhHHHHHHHHHHHHHHHCCCCeEEEeccccHHHHHHHHHHHHHHhc--
Confidence 1 111223367899999999999999999999997763211
Q ss_pred hcccccCCCcceEEEEeCCCccccHHHHHHHHhcCC--CceeEEEeeCCCcccccCCC---CccccCCCceeeecC
Q 001709 260 SSSLKENDKVQVKCITFSQPPVGNAALRDYVNRKGW--QHYFKSYCIPEDLVPRILSP---AYFHHYNNVQPLLVS 330 (1022)
Q Consensus 260 ~~~~~~~~~~~V~vyTFGqPRVGN~aFA~~v~~~~~--~~~f~RVVh~~DiVPrLP~~---~~f~H~~~Evw~~~~ 330 (1022)
........+.|||||||||||.+||+|+++... ...++||||.+|+|||||+. .+|+|+++|+||+..
T Consensus 347 ---~~~~l~~~~~vYTFGsPRVGN~~FA~~~~~~~~~~~~~~~RVVn~~DiVPrLP~~~~~~gY~H~G~ev~y~s~ 419 (515)
T PLN02934 347 ---ETEVMKRLLGVYTFGQPRIGNRQLGKFMEAQLNYPVPRYFRVVYCNDLVPRLPYDDKTFLYKHFGVCLYYDSR 419 (515)
T ss_pred ---ccccccCceEEEEeCCCCccCHHHHHHHHHhhcCCCccEEEEEECCCcccccCCCCCCcceEeCCeeEEEcCC
Confidence 111112246899999999999999999998632 23356999999999999962 579999999999754
No 3
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=2.1e-38 Score=352.49 Aligned_cols=214 Identities=18% Similarity=0.188 Sum_probs=187.4
Q ss_pred cccccCceeEEEEecCCCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc--hhhhc
Q 001709 694 FIRPEGLSDVFIFCTSDFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD--QEGIA 768 (1022)
Q Consensus 694 ~i~~~~l~~~~~~~~~~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~--~~~lr 768 (1022)
.++++++++.| +...+|+||||+|+ +++|+||||||||||||+|+||+ .|++|+|.++|.++ ..--+
T Consensus 5 ~l~i~~v~k~y-----g~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe---~p~~G~I~l~G~~i~~lpp~k 76 (352)
T COG3842 5 ALEIRNVSKSF-----GDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFE---QPSSGEILLDGEDITDVPPEK 76 (352)
T ss_pred eEEEEeeeeec-----CCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCC---CCCCceEEECCEECCCCChhh
Confidence 45656666533 57889999999999 99999999999999999999999 99999999999887 34457
Q ss_pred CceEEEcCCCCCCccccccccchHHHHhcccc-----c---hHHHHHHHH-HhcCCccccCCCcCCch-HHHHHHHHH--
Q 001709 769 GGLCYCDSAGVNLQELTMEAARFKDEMWMGIR-----D---LSRKTDLIV-LVHNLSHKIPRYNYSSA-SGQQQPALS-- 836 (1022)
Q Consensus 769 ~~IGyV~Q~~~~~~~lTV~~~~~~ENI~~g~~-----~---~~~~v~~~L-~v~gL~~~~~r~~~~LS-GqrQRvaIA-- 836 (1022)
|.||||||+.++||+||| +|||+||++ . .++++.+++ ++ +|.++.+|+|++|| |||||||||
T Consensus 77 R~ig~VFQ~YALFPHltV-----~~NVafGLk~~~~~~~~~i~~rv~e~L~lV-~L~~~~~R~p~qLSGGQqQRVALARA 150 (352)
T COG3842 77 RPIGMVFQSYALFPHMTV-----EENVAFGLKVRKKLKKAEIKARVEEALELV-GLEGFADRKPHQLSGGQQQRVALARA 150 (352)
T ss_pred cccceeecCcccCCCCcH-----HHHhhhhhhhcCCCCHHHHHHHHHHHHHHc-CchhhhhhChhhhChHHHHHHHHHHH
Confidence 899999997777999999 999999988 1 456899999 88 99999999999999 999999999
Q ss_pred -------hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCCcccccCcccccccCCCC---
Q 001709 837 -------LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCPYVMPGAVSASLSWGASG--- 906 (1022)
Q Consensus 837 -------LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~~V~~~~~~a~~l~~~~~--- 906 (1022)
||||||+|+ +|.+-|..+...+.+..++..-|.++|+ |+-.||+-++||+.
T Consensus 151 L~~~P~vLLLDEPlSa-------------LD~kLR~~mr~Elk~lq~~~giT~i~VT------HDqeEAl~msDrI~Vm~ 211 (352)
T COG3842 151 LVPEPKVLLLDEPLSA-------------LDAKLREQMRKELKELQRELGITFVYVT------HDQEEALAMSDRIAVMN 211 (352)
T ss_pred hhcCcchhhhcCcccc-------------hhHHHHHHHHHHHHHHHHhcCCeEEEEE------CCHHHHhhhccceEEcc
Confidence 999999997 7777888888888777777766666666 99999999999987
Q ss_pred -CCCCCCCCCceeeecccccccCCCCCCCCcccch
Q 001709 907 -GDSDGRSGAQKLLHAPINLVWRPFQRKDNILPVE 940 (1022)
Q Consensus 907 -~~~~~~~~~~~i~~~pi~l~~~pf~~~~~~~~~e 940 (1022)
+.++|.+++..+|..|.+.|.+.|.++.|+++..
T Consensus 212 ~G~I~Q~gtP~eiY~~P~~~fVA~FiG~~N~l~~~ 246 (352)
T COG3842 212 DGRIEQVGTPEEIYERPATRFVADFIGESNIFEGK 246 (352)
T ss_pred CCceeecCCHHHHhhCcchHHHHHHhCcceeeeee
Confidence 5555799999999999999999999999877753
No 4
>PLN00413 triacylglycerol lipase
Probab=100.00 E-value=1.8e-36 Score=344.46 Aligned_cols=195 Identities=23% Similarity=0.307 Sum_probs=150.2
Q ss_pred HHHHHhhcccccCCc--------------ceeehccccccccccCcEEEeeccCCCCCCCCceeeecccCCeEEEEEcCC
Q 001709 77 LCCMVLSECVYKKPV--------------IEIVRAVNKFKADFGGQIVSLERVQPSSDHVPHRYLLAEAGDTLFASFIGT 142 (1022)
Q Consensus 77 l~c~~aSecaY~~p~--------------~elv~~~N~f~~d~~gqI~~~~~vq~s~Dh~~~rylvae~~~~IVVAFRGT 142 (1022)
.+|+|||+.+|++.. ..++.|||+++...++|++.+.++ +++.+.||||||||
T Consensus 143 ~l~imAsklaYen~~~v~~vv~~~W~m~~~~fy~c~n~~~~~~~tqa~~~~D~-------------~~d~n~IVVAFRGT 209 (479)
T PLN00413 143 LLSIMASKLAYENEHFIRSVLHDHWKMDLLGFYSCPNDFDKQRSTEVIVIKDT-------------KDDPNLIIVSFRGT 209 (479)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHhhccceeeeeeeccccccccccceEEEEEcc-------------cCCCCeEEEEecCC
Confidence 578888888888775 468899999998888888876653 34567999999999
Q ss_pred C--CchhhhhhccccccccccccchhhhhhhccccchhhhhccCCCCCCCCCCCCCcccCCCCCCcccHhHHHHHhc---
Q 001709 143 K--QYKDVMTDANILQGAIFHEDAIEDMEGIELGESKQAKEQKGNGENRWNPLEKPRQLKDKPKPAAHRGFLARAKG--- 217 (1022)
Q Consensus 143 ~--s~~DwitDl~~~q~~~f~~~~l~~~~~~~a~~~~~~~~q~g~~~~~g~~~~~~k~~~~~~~~~VH~GFl~a~~~--- 217 (1022)
+ +..||++|+++.+..+ ...|+||.||+++|..
T Consensus 210 ~p~s~~DWitDldf~~~~~------------------------------------------~~~gkVH~GF~~Al~~~k~ 247 (479)
T PLN00413 210 DPFDADDWCTDLDLSWHEV------------------------------------------KNVGKIHGGFMKALGLPKE 247 (479)
T ss_pred CCCCHHHHHhhccccccCC------------------------------------------CCCceeehhHHHhhccccc
Confidence 8 6799999999864221 1356899999998742
Q ss_pred ----------------------ChhHHHHHHHhcCCCeEEEeccChhHHHHHHHHHHHHHHHhhhcccccCCCcceEEEE
Q 001709 218 ----------------------IPALELYRLAQKKKRKLVLCGHSLGGAVAALATLAILRVVAASSSLKENDKVQVKCIT 275 (1022)
Q Consensus 218 ----------------------I~~~~l~~l~~~p~ykLVvTGHSLGGALAtLAAl~LLr~~~~~~~~~~~~~~~V~vyT 275 (1022)
+...+...+.+||+++|++||||||||+|+|||+++.... .......-..|||
T Consensus 248 ~w~~~~~~~~~~~~~~~~ayy~i~~~Lk~ll~~~p~~kliVTGHSLGGALAtLaA~~L~~~~-----~~~~~~ri~~VYT 322 (479)
T PLN00413 248 GWPEEINLDETQNATSLLAYYTILRHLKEIFDQNPTSKFILSGHSLGGALAILFTAVLIMHD-----EEEMLERLEGVYT 322 (479)
T ss_pred ccccccccccccccchhhhHHHHHHHHHHHHHHCCCCeEEEEecCHHHHHHHHHHHHHHhcc-----chhhccccceEEE
Confidence 1222233467899999999999999999999997764211 0011111247999
Q ss_pred eCCCccccHHHHHHHHhcC--CCceeEEEeeCCCcccccCCC---CccccCCCceeeecCC
Q 001709 276 FSQPPVGNAALRDYVNRKG--WQHYFKSYCIPEDLVPRILSP---AYFHHYNNVQPLLVSA 331 (1022)
Q Consensus 276 FGqPRVGN~aFA~~v~~~~--~~~~f~RVVh~~DiVPrLP~~---~~f~H~~~Evw~~~~~ 331 (1022)
||||||||.+||+|+++.. +...++||||.+|+|||+|+. .+|+|+|+|+||+...
T Consensus 323 FG~PRVGN~~FA~~~~~~l~~~~~~~~RvVn~~DiVPrLP~~~~~~~y~H~G~el~yds~y 383 (479)
T PLN00413 323 FGQPRVGDEDFGIFMKDKLKEFDVKYERYVYCNDMVPRLPFDDKTLMFKHFGACLYCDSFY 383 (479)
T ss_pred eCCCCCccHHHHHHHHhhhcccCcceEEEEECCCccCCcCCCCCCCceEecceEEEEeccc
Confidence 9999999999999998763 233466999999999999973 5899999999997554
No 5
>PLN02162 triacylglycerol lipase
Probab=100.00 E-value=2.2e-36 Score=342.92 Aligned_cols=195 Identities=23% Similarity=0.276 Sum_probs=147.9
Q ss_pred HHHHHhhcccccCCc--------------ceeehccccccccccCcEEEeeccCCCCCCCCceeeecccCCeEEEEEcCC
Q 001709 77 LCCMVLSECVYKKPV--------------IEIVRAVNKFKADFGGQIVSLERVQPSSDHVPHRYLLAEAGDTLFASFIGT 142 (1022)
Q Consensus 77 l~c~~aSecaY~~p~--------------~elv~~~N~f~~d~~gqI~~~~~vq~s~Dh~~~rylvae~~~~IVVAFRGT 142 (1022)
-+|+|||+.+|+++. ...+.|||+|+.+..+|.+++.+. .++.+.||||||||
T Consensus 141 ~l~ima~klayen~~~i~~~v~~~w~m~~v~~y~~wn~~~~~~~TQafv~~d~-------------~~d~~~IVVAFRGT 207 (475)
T PLN02162 141 MLSIMASKISYESKPFINSVVKNTWKMDLVGNYDFYNAFQESKLTQAFVFKTS-------------STNPDLIVVSFRGT 207 (475)
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHhcCccccchhhhhhhhhhhcccceEEEEec-------------cCCCceEEEEEccC
Confidence 468888888888775 357899999999888888776642 23457999999999
Q ss_pred CCc--hhhhhhccccccccccccchhhhhhhccccchhhhhccCCCCCCCCCCCCCcccCCCCCCcccHhHHHHHhcC--
Q 001709 143 KQY--KDVMTDANILQGAIFHEDAIEDMEGIELGESKQAKEQKGNGENRWNPLEKPRQLKDKPKPAAHRGFLARAKGI-- 218 (1022)
Q Consensus 143 ~s~--~DwitDl~~~q~~~f~~~~l~~~~~~~a~~~~~~~~q~g~~~~~g~~~~~~k~~~~~~~~~VH~GFl~a~~~I-- 218 (1022)
++. .||++|+++.+..+ +..|+||.||+++|..+
T Consensus 208 ~~~~~~DWiTDld~s~~~~------------------------------------------~~~GkVH~GF~~A~~~~~~ 245 (475)
T PLN02162 208 EPFEAADWCTDLDLSWYEL------------------------------------------KNVGKVHAGFSRALGLQKD 245 (475)
T ss_pred CCCcHHHHHhhcCcceecC------------------------------------------CCCeeeeHHHHHHHHhhhc
Confidence 964 89999999865331 23578999999998522
Q ss_pred -------------------hhHHHHHHHhcCCCeEEEeccChhHHHHHHHHHHHHHHHhhhcccccCCCcceEEEEeCCC
Q 001709 219 -------------------PALELYRLAQKKKRKLVLCGHSLGGAVAALATLAILRVVAASSSLKENDKVQVKCITFSQP 279 (1022)
Q Consensus 219 -------------------~~~~l~~l~~~p~ykLVvTGHSLGGALAtLAAl~LLr~~~~~~~~~~~~~~~V~vyTFGqP 279 (1022)
...+...+.++|+|+|++||||||||+|+|+|..+.... ........+.|||||||
T Consensus 246 ~~~p~~~~~~~~~~ay~~I~~~L~~lL~k~p~~kliVTGHSLGGALAtLaAa~L~~~~-----~~~l~~~~~~vYTFGqP 320 (475)
T PLN02162 246 GGWPKENISLLHQYAYYTIRQMLRDKLARNKNLKYILTGHSLGGALAALFPAILAIHG-----EDELLDKLEGIYTFGQP 320 (475)
T ss_pred ccccccccchhhhhhHHHHHHHHHHHHHhCCCceEEEEecChHHHHHHHHHHHHHHcc-----ccccccccceEEEeCCC
Confidence 222233467899999999999999999999986663211 00001112579999999
Q ss_pred ccccHHHHHHHHhcC--CCceeEEEeeCCCcccccCCC----CccccCCCceeeecCC
Q 001709 280 PVGNAALRDYVNRKG--WQHYFKSYCIPEDLVPRILSP----AYFHHYNNVQPLLVSA 331 (1022)
Q Consensus 280 RVGN~aFA~~v~~~~--~~~~f~RVVh~~DiVPrLP~~----~~f~H~~~Evw~~~~~ 331 (1022)
||||.+||+|+++.. ....++|+||.+|+|||+|+. .+|+|++++.+++...
T Consensus 321 RVGn~~FA~~~~~~~~~~~~~~~RvVn~nDiVPrlP~~~~~~~gY~H~G~c~y~~s~y 378 (475)
T PLN02162 321 RVGDEDFGEFMKGVVKKHGIEYERFVYNNDVVPRVPFDDKLLFSYKHYGPCNSFNSLY 378 (475)
T ss_pred CccCHHHHHHHHhhhhcCCCceEEEEeCCCcccccCCCCcccceeEECCccceeeccc
Confidence 999999999999753 223355999999999999973 4699999998887543
No 6
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.4e-36 Score=334.63 Aligned_cols=208 Identities=20% Similarity=0.220 Sum_probs=176.9
Q ss_pred ccccCceeEEEEecCCCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc--hhhhcC
Q 001709 695 IRPEGLSDVFIFCTSDFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD--QEGIAG 769 (1022)
Q Consensus 695 i~~~~l~~~~~~~~~~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~--~~~lr~ 769 (1022)
|+++++++.| +...+|++|||+|+ +++|+||||||||||||+|+||+ +|++|+|+|+|.++ ..-.+|
T Consensus 4 i~l~~v~K~y-----g~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe---~~~~G~I~i~g~~vt~l~P~~R 75 (338)
T COG3839 4 LELKNVRKSF-----GSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLE---EPTSGEILIDGRDVTDLPPEKR 75 (338)
T ss_pred EEEeeeEEEc-----CCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC---CCCCceEEECCEECCCCChhHC
Confidence 4555566533 22229999999999 99999999999999999999999 99999999998776 333468
Q ss_pred ceEEEcCCCCCCccccccccchHHHHhccccc-------hHHHHHHHH-HhcCCccccCCCcCCch-HHHHHHHHH----
Q 001709 770 GLCYCDSAGVNLQELTMEAARFKDEMWMGIRD-------LSRKTDLIV-LVHNLSHKIPRYNYSSA-SGQQQPALS---- 836 (1022)
Q Consensus 770 ~IGyV~Q~~~~~~~lTV~~~~~~ENI~~g~~~-------~~~~v~~~L-~v~gL~~~~~r~~~~LS-GqrQRvaIA---- 836 (1022)
+|+||||+.++||+||| +|||+|+++. .+++++++. .+ +|.++++++|.+|| |||||||||
T Consensus 76 ~iamVFQ~yALyPhmtV-----~~Niaf~Lk~~~~~k~ei~~rV~eva~~L-~l~~lL~r~P~~LSGGQrQRVAlaRAlV 149 (338)
T COG3839 76 GIAMVFQNYALYPHMTV-----YENIAFGLKLRGVPKAEIDKRVKEVAKLL-GLEHLLNRKPLQLSGGQRQRVALARALV 149 (338)
T ss_pred CEEEEeCCccccCCCcH-----HHHhhhhhhhCCCchHHHHHHHHHHHHHc-CChhHHhcCcccCChhhHHHHHHHHHHh
Confidence 99999998777999999 9999999872 578899999 76 99999999999999 999999999
Q ss_pred -----hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCCcccccCcccccccCCCC----C
Q 001709 837 -----LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCPYVMPGAVSASLSWGASG----G 907 (1022)
Q Consensus 837 -----LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~~V~~~~~~a~~l~~~~~----~ 907 (1022)
+|||||+|. +|++-|..+...+.+.-+...-|++.|+ |+-.||..+++|+. +
T Consensus 150 r~P~v~L~DEPlSn-------------LDa~lR~~mr~ei~~lh~~l~~T~IYVT------HDq~EAmtladri~Vm~~G 210 (338)
T COG3839 150 RKPKVFLLDEPLSN-------------LDAKLRVLMRSEIKKLHERLGTTTIYVT------HDQVEAMTLADRIVVMNDG 210 (338)
T ss_pred cCCCEEEecCchhH-------------hhHHHHHHHHHHHHHHHHhcCCcEEEEc------CCHHHHHhhCCEEEEEeCC
Confidence 999999996 7777777777777665555554555554 99999999999986 6
Q ss_pred CCCCCCCCceeeecccccccCCCCCCCC
Q 001709 908 DSDGRSGAQKLLHAPINLVWRPFQRKDN 935 (1022)
Q Consensus 908 ~~~~~~~~~~i~~~pi~l~~~pf~~~~~ 935 (1022)
.+.|.+++..+|..|.|.|.+.|.+...
T Consensus 211 ~i~Q~g~p~ely~~P~n~fVA~FiG~p~ 238 (338)
T COG3839 211 RIQQVGTPLELYERPANLFVAGFIGSPP 238 (338)
T ss_pred eeeecCChHHHhhCccchhhhhhcCChh
Confidence 6677999999999999999999998763
No 7
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=2.3e-36 Score=320.18 Aligned_cols=197 Identities=16% Similarity=0.162 Sum_probs=174.4
Q ss_pred CCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc----hhhhcCceEEEcCCCCCCc
Q 001709 710 DFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD----QEGIAGGLCYCDSAGVNLQ 782 (1022)
Q Consensus 710 ~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~----~~~lr~~IGyV~Q~~~~~~ 782 (1022)
+.+.|++|+||+|+ +++|||||||||||+||||++|+ .|++|+|++||.++ ...+|++||||-|...+||
T Consensus 12 ~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLi---ept~G~I~i~g~~i~~~d~~~LRr~IGYviQqigLFP 88 (309)
T COG1125 12 GNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLI---EPTSGEILIDGEDISDLDPVELRRKIGYVIQQIGLFP 88 (309)
T ss_pred CCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhccc---CCCCceEEECCeecccCCHHHHHHhhhhhhhhcccCC
Confidence 46889999999999 99999999999999999999999 99999999998664 6689999999999555599
Q ss_pred cccccccchHHHHhcccc-------chHHHHHHHH-HhcCCc--cccCCCcCCch-HHHHHHHHH---------hhhccc
Q 001709 783 ELTMEAARFKDEMWMGIR-------DLSRKTDLIV-LVHNLS--HKIPRYNYSSA-SGQQQPALS---------LLLNEA 842 (1022)
Q Consensus 783 ~lTV~~~~~~ENI~~g~~-------~~~~~v~~~L-~v~gL~--~~~~r~~~~LS-GqrQRvaIA---------LLLDEP 842 (1022)
++|| .|||++-.. ..+++++++| ++ ||+ ++.+|||++|| ||||||.+| ||||||
T Consensus 89 h~Tv-----~eNIa~VP~L~~w~k~~i~~r~~ELl~lv-gL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~ilLMDEP 162 (309)
T COG1125 89 HLTV-----AENIATVPKLLGWDKERIKKRADELLDLV-GLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLMDEP 162 (309)
T ss_pred CccH-----HHHHHhhhhhcCCCHHHHHHHHHHHHHHh-CCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCeEeecCC
Confidence 9999 999987544 2577899999 88 996 59999999999 999999998 999999
Q ss_pred cCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCCcccccCcccccccCCCC----CCCCCCCCCcee
Q 001709 843 KSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCPYVMPGAVSASLSWGASG----GDSDGRSGAQKL 918 (1022)
Q Consensus 843 TSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~~V~~~~~~a~~l~~~~~----~~~~~~~~~~~i 918 (1022)
|+| +|+-+|..+...+.+.-++.+.|+++|+ |+.+||+.|++|+. +++.|..++..+
T Consensus 163 FgA-------------LDpI~R~~lQ~e~~~lq~~l~kTivfVT------HDidEA~kLadri~vm~~G~i~Q~~~P~~i 223 (309)
T COG1125 163 FGA-------------LDPITRKQLQEEIKELQKELGKTIVFVT------HDIDEALKLADRIAVMDAGEIVQYDTPDEI 223 (309)
T ss_pred ccc-------------cChhhHHHHHHHHHHHHHHhCCEEEEEe------cCHHHHHhhhceEEEecCCeEEEeCCHHHH
Confidence 998 7888899999888888788888888887 99999999999986 555568888888
Q ss_pred eecccccccCCCCCCC
Q 001709 919 LHAPINLVWRPFQRKD 934 (1022)
Q Consensus 919 ~~~pi~l~~~pf~~~~ 934 (1022)
+..|.|-|...|.+..
T Consensus 224 l~~Pan~FV~~f~g~~ 239 (309)
T COG1125 224 LANPANDFVEDFFGES 239 (309)
T ss_pred HhCccHHHHHHHhccc
Confidence 8999998888877765
No 8
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2e-35 Score=319.76 Aligned_cols=203 Identities=19% Similarity=0.199 Sum_probs=176.9
Q ss_pred CCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccc---cc--hhhhcCceEEEcCCCCCC
Q 001709 710 DFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEA---DD--QEGIAGGLCYCDSAGVNL 781 (1022)
Q Consensus 710 ~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~---~~--~~~lr~~IGyV~Q~~~~~ 781 (1022)
+...+++||||+|+ .+||+||||||||||||+|+||+ .|+.|+|.+++. |. .....++||||||+..+|
T Consensus 13 ~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe---~p~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF 89 (345)
T COG1118 13 GAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLE---TPDAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALF 89 (345)
T ss_pred ccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcC---CCCCceEEECCEeccchhccchhhcceeEEEechhhc
Confidence 45679999999999 99999999999999999999999 999999999987 54 234468899999966669
Q ss_pred ccccccccchHHHHhcccc---------chHHHHHHHH-HhcCCccccCCCcCCch-HHHHHHHHH---------hhhcc
Q 001709 782 QELTMEAARFKDEMWMGIR---------DLSRKTDLIV-LVHNLSHKIPRYNYSSA-SGQQQPALS---------LLLNE 841 (1022)
Q Consensus 782 ~~lTV~~~~~~ENI~~g~~---------~~~~~v~~~L-~v~gL~~~~~r~~~~LS-GqrQRvaIA---------LLLDE 841 (1022)
++||| +|||+||++ ..+.++.++| ++ .|+++.++||.+|| ||||||||| |||||
T Consensus 90 ~HmtV-----a~NIAFGl~~~~~~p~~~~~r~rv~elL~lv-qL~~la~ryP~QLSGGQrQRVALARALA~eP~vLLLDE 163 (345)
T COG1118 90 PHMTV-----ADNIAFGLKVRKERPSEAEIRARVEELLRLV-QLEGLADRYPAQLSGGQRQRVALARALAVEPKVLLLDE 163 (345)
T ss_pred ccchH-----HhhhhhcccccccCCChhhHHHHHHHHHHHh-cccchhhcCchhcChHHHHHHHHHHHhhcCCCeEeecC
Confidence 99999 999999984 2577899999 88 99999999999999 999999999 99999
Q ss_pred ccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCCcccccCcccccccCCCC----CCCCCCCCCce
Q 001709 842 AKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCPYVMPGAVSASLSWGASG----GDSDGRSGAQK 917 (1022)
Q Consensus 842 PTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~~V~~~~~~a~~l~~~~~----~~~~~~~~~~~ 917 (1022)
|+++ +|++-++.+-..+.+.....+-++++|+ |+..++.-+++|+. +.+++.+++..
T Consensus 164 Pf~A-------------LDa~vr~~lr~wLr~~~~~~~~ttvfVT------HD~eea~~ladrvvvl~~G~Ieqvg~p~e 224 (345)
T COG1118 164 PFGA-------------LDAKVRKELRRWLRKLHDRLGVTTVFVT------HDQEEALELADRVVVLNQGRIEQVGPPDE 224 (345)
T ss_pred Cchh-------------hhHHHHHHHHHHHHHHHHhhCceEEEEe------CCHHHHHhhcceEEEecCCeeeeeCCHHH
Confidence 9997 7777788877777777777777888776 88888888888875 55556899999
Q ss_pred eeecccccccCCCCCCCCcccch
Q 001709 918 LLHAPINLVWRPFQRKDNILPVE 940 (1022)
Q Consensus 918 i~~~pi~l~~~pf~~~~~~~~~e 940 (1022)
++..|...|..+|.+..+..+..
T Consensus 225 v~~~P~s~fV~~f~G~~n~~~~~ 247 (345)
T COG1118 225 VYDHPASRFVARFLGEVNVLPGE 247 (345)
T ss_pred HhcCCCccceecccccceeccce
Confidence 99999999999999998866643
No 9
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=9.3e-35 Score=298.50 Aligned_cols=226 Identities=16% Similarity=0.146 Sum_probs=185.9
Q ss_pred ceeEEEEecCCCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccchhhhcCceEEEcC
Q 001709 700 LSDVFIFCTSDFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADDQEGIAGGLCYCDS 776 (1022)
Q Consensus 700 l~~~~~~~~~~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~~~~lr~~IGyV~Q 776 (1022)
+++++..|......+|+|||++|. +|+++||||||||||||+++|+. +|+.|+|.+|++.+ +..-..-|.|||
T Consensus 6 ~~~~sl~y~g~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~---~P~~G~i~l~~r~i-~gPgaergvVFQ 81 (259)
T COG4525 6 VSHLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFV---TPSRGSIQLNGRRI-EGPGAERGVVFQ 81 (259)
T ss_pred hhheEEecCCcchhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCc---CcccceEEECCEec-cCCCccceeEec
Confidence 455555544333459999999998 99999999999999999999999 99999999998776 222234499999
Q ss_pred CCCCCccccccccchHHHHhccccc-------hHHHHHHHH-HhcCCccccCCCcCCch-HHHHHHHHH---------hh
Q 001709 777 AGVNLQELTMEAARFKDEMWMGIRD-------LSRKTDLIV-LVHNLSHKIPRYNYSSA-SGQQQPALS---------LL 838 (1022)
Q Consensus 777 ~~~~~~~lTV~~~~~~ENI~~g~~~-------~~~~v~~~L-~v~gL~~~~~r~~~~LS-GqrQRvaIA---------LL 838 (1022)
++.++||+|+ .||++||+.- ..+.+.+.+ +| ||.++.++++.+|| |||||+.|| ||
T Consensus 82 ~~~LlPWl~~-----~dNvafgL~l~Gi~k~~R~~~a~q~l~~V-gL~~~~~~~i~qLSGGmrQRvGiARALa~eP~~Ll 155 (259)
T COG4525 82 NEALLPWLNV-----IDNVAFGLQLRGIEKAQRREIAHQMLALV-GLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLL 155 (259)
T ss_pred cCccchhhHH-----HHHHHHHHHhcCCCHHHHHHHHHHHHHHh-CcccccccceEeecchHHHHHHHHHHhhcCcceEe
Confidence 8888999999 9999999871 345677788 88 99999999999999 999999999 99
Q ss_pred hccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCCcccccCcccccccCCCCCCCCCCCCCcee
Q 001709 839 LNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCPYVMPGAVSASLSWGASGGDSDGRSGAQKL 918 (1022)
Q Consensus 839 LDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~~V~~~~~~a~~l~~~~~~~~~~~~~~~~i 918 (1022)
||||+++ +|+-+|+.+...+++.|+.++..+.+|+ |+++||++++++-.+ ++++|++
T Consensus 156 LDEPfgA-------------lDa~tRe~mQelLldlw~~tgk~~lliT------H~ieEAlflatrLvv----lsp~pgR 212 (259)
T COG4525 156 LDEPFGA-------------LDALTREQMQELLLDLWQETGKQVLLIT------HDIEEALFLATRLVV----LSPGPGR 212 (259)
T ss_pred ecCchhh-------------HHHHHHHHHHHHHHHHHHHhCCeEEEEe------ccHHHHHhhhheeEE----ecCCCce
Confidence 9999997 8889999999999999999999988887 999999999999888 5566666
Q ss_pred ee--cccccccCCCCCCC---CcccchhHHHHHHHHHHHHhhccch
Q 001709 919 LH--APINLVWRPFQRKD---NILPVEGINSLGQLVHRVLRTHEEV 959 (1022)
Q Consensus 919 ~~--~pi~l~~~pf~~~~---~~~~~eg~~~L~~~v~~~L~~~~e~ 959 (1022)
+. .|.++ .+.|...+ .+...++|.+.++.+-..+.+.+|+
T Consensus 213 vv~~~~~df-~rR~aage~~RaIksdpeF~~~r~~~l~~if~~~e~ 257 (259)
T COG4525 213 VVERLPLDF-ARRYAAGEPSRAIKSDPEFIAMREEVLDEVFEQREA 257 (259)
T ss_pred eeEecCCCH-HHHhhcCCCcchhhcCHHHHHhhHHHHHHHhhhhhh
Confidence 64 55554 44443222 2677899998888887777665543
No 10
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=4e-34 Score=297.96 Aligned_cols=181 Identities=18% Similarity=0.158 Sum_probs=139.2
Q ss_pred ccccCceeEEEEecCCCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc-----hhh
Q 001709 695 IRPEGLSDVFIFCTSDFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD-----QEG 766 (1022)
Q Consensus 695 i~~~~l~~~~~~~~~~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~-----~~~ 766 (1022)
|+++++++.| +...+|++|||+|. +++|+||||||||||||||+||. .|++|+|.++|.++ ...
T Consensus 3 i~i~~l~K~f-----g~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE---~~~~G~I~i~g~~~~~~~~~~~ 74 (240)
T COG1126 3 IEIKNLSKSF-----GDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLE---EPDSGSITVDGEDVGDKKDILK 74 (240)
T ss_pred EEEEeeeEEe-----CCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCc---CCCCceEEECCEeccchhhHHH
Confidence 4455666533 67899999999998 99999999999999999999999 99999999998543 356
Q ss_pred hcCceEEEcCCCCCCccccccccchHHHHhcccc--------chHHHHHHHH-HhcCCccccCCCcCCch-HHHHHHHHH
Q 001709 767 IAGGLCYCDSAGVNLQELTMEAARFKDEMWMGIR--------DLSRKTDLIV-LVHNLSHKIPRYNYSSA-SGQQQPALS 836 (1022)
Q Consensus 767 lr~~IGyV~Q~~~~~~~lTV~~~~~~ENI~~g~~--------~~~~~v~~~L-~v~gL~~~~~r~~~~LS-GqrQRvaIA 836 (1022)
+|+++|||||+..+||++|| .||+.++.. +.++++.++| +| ||.+.++.||.+|| |||||||||
T Consensus 75 ~R~~vGmVFQ~fnLFPHlTv-----leNv~lap~~v~~~~k~eA~~~A~~lL~~V-GL~~ka~~yP~qLSGGQqQRVAIA 148 (240)
T COG1126 75 LRRKVGMVFQQFNLFPHLTV-----LENVTLAPVKVKKLSKAEAREKALELLEKV-GLADKADAYPAQLSGGQQQRVAIA 148 (240)
T ss_pred HHHhcCeecccccccccchH-----HHHHHhhhHHHcCCCHHHHHHHHHHHHHHc-CchhhhhhCccccCcHHHHHHHHH
Confidence 79999999994444999999 999998764 2566788888 99 99999999999999 999999999
Q ss_pred ---------hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEe-cCCcccccCcccccccC
Q 001709 837 ---------LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVIN-SCPYVMPGAVSASLSWG 903 (1022)
Q Consensus 837 ---------LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~-~~~~V~~~~~~a~~l~~ 903 (1022)
+|+||||||.+|+ -..+.+ .+|..+....-|.++|+ ...+.-.-+|.++|+.+
T Consensus 149 RALaM~P~vmLFDEPTSALDPE-------------lv~EVL-~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~ 211 (240)
T COG1126 149 RALAMDPKVMLFDEPTSALDPE-------------LVGEVL-DVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQ 211 (240)
T ss_pred HHHcCCCCEEeecCCcccCCHH-------------HHHHHH-HHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeC
Confidence 9999999985553 222322 23344555544555554 33333334444444444
No 11
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=4.7e-32 Score=294.14 Aligned_cols=177 Identities=20% Similarity=0.237 Sum_probs=143.5
Q ss_pred ccccCceeEEEEecCCCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc-------h
Q 001709 695 IRPEGLSDVFIFCTSDFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD-------Q 764 (1022)
Q Consensus 695 i~~~~l~~~~~~~~~~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~-------~ 764 (1022)
|+++++++.|.....+..++|+||||+|+ ++||||.||||||||+|+|++|. +|++|+|.+||.++ .
T Consensus 2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le---~PtsG~v~v~G~di~~l~~~~L 78 (339)
T COG1135 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLE---RPTSGSVFVDGQDLTALSEAEL 78 (339)
T ss_pred eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccC---CCCCceEEEcCEecccCChHHH
Confidence 45566665432211123579999999999 99999999999999999999999 99999999998553 4
Q ss_pred hhhcCceEEEcCCCCC-CccccccccchHHHHhcccc-------chHHHHHHHH-HhcCCccccCCCcCCch-HHHHHHH
Q 001709 765 EGIAGGLCYCDSAGVN-LQELTMEAARFKDEMWMGIR-------DLSRKTDLIV-LVHNLSHKIPRYNYSSA-SGQQQPA 834 (1022)
Q Consensus 765 ~~lr~~IGyV~Q~~~~-~~~lTV~~~~~~ENI~~g~~-------~~~~~v~~~L-~v~gL~~~~~r~~~~LS-GqrQRva 834 (1022)
...|++|||+|| ..+ +...|| ++||+|+++ ..++++.++| .| ||+++.++||.+|| ||||||+
T Consensus 79 r~~R~~IGMIFQ-hFnLLssrTV-----~~NvA~PLeiag~~k~ei~~RV~elLelV-gL~dk~~~yP~qLSGGQKQRVa 151 (339)
T COG1135 79 RQLRQKIGMIFQ-HFNLLSSRTV-----FENVAFPLELAGVPKAEIKQRVAELLELV-GLSDKADRYPAQLSGGQKQRVA 151 (339)
T ss_pred HHHHhhccEEec-cccccccchH-----HhhhhhhHhhcCCCHHHHHHHHHHHHHHc-CChhhhccCchhcCcchhhHHH
Confidence 567899999999 555 777999 999999887 2567899999 88 99999999999999 9999999
Q ss_pred HH---------hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCCccccc
Q 001709 835 LS---------LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCPYVMPG 894 (1022)
Q Consensus 835 IA---------LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~~V~~~ 894 (1022)
|| ||.|||||| ||+.+-..++..+.++-++..-|+++|+|--.|+..
T Consensus 152 IARALa~~P~iLL~DEaTSA-------------LDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ 207 (339)
T COG1135 152 IARALANNPKILLCDEATSA-------------LDPETTQSILELLKDINRELGLTIVLITHEMEVVKR 207 (339)
T ss_pred HHHHHhcCCCEEEecCcccc-------------CChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHH
Confidence 99 999999998 677777777766666656655577777655444433
No 12
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.97 E-value=2e-31 Score=281.56 Aligned_cols=184 Identities=14% Similarity=0.174 Sum_probs=147.8
Q ss_pred ccCceeEEEEecCCCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc-------hhh
Q 001709 697 PEGLSDVFIFCTSDFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD-------QEG 766 (1022)
Q Consensus 697 ~~~l~~~~~~~~~~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~-------~~~ 766 (1022)
++++.+.+.... ...++|++|||+|+ +|+|+|||||||||||++|.|+. +|++|.|.++|.++ ...
T Consensus 4 ~~~v~k~y~~~~-~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld---~pt~G~v~i~g~d~~~l~~~~~~~ 79 (226)
T COG1136 4 LKNVSKIYGLGG-EKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLD---KPTSGEVLINGKDLTKLSEKELAK 79 (226)
T ss_pred EeeeEEEeccCC-cceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccc---CCCCceEEECCEEcCcCCHHHHHH
Confidence 355665442222 22679999999999 99999999999999999999999 99999999998554 122
Q ss_pred -hcCceEEEcCCCCCCccccccccchHHHHhcccc----c---hHHHHHHHH-HhcCCccccC-CCcCCch-HHHHHHHH
Q 001709 767 -IAGGLCYCDSAGVNLQELTMEAARFKDEMWMGIR----D---LSRKTDLIV-LVHNLSHKIP-RYNYSSA-SGQQQPAL 835 (1022)
Q Consensus 767 -lr~~IGyV~Q~~~~~~~lTV~~~~~~ENI~~g~~----~---~~~~v~~~L-~v~gL~~~~~-r~~~~LS-GqrQRvaI 835 (1022)
.++.||||||+..+++.+|| .|||.++.. . ..+++++++ .+ ||.+... ++|.+|| ||||||||
T Consensus 80 ~R~~~iGfvFQ~~nLl~~ltv-----~ENv~lpl~~~~~~~~~~~~~~~~l~~~l-gl~~~~~~~~p~eLSGGqqQRVAI 153 (226)
T COG1136 80 LRRKKIGFVFQNFNLLPDLTV-----LENVELPLLIAGKSAGRRKRAAEELLEVL-GLEDRLLKKKPSELSGGQQQRVAI 153 (226)
T ss_pred HHHHhEEEECccCCCCCCCCH-----HHHHHhHHHHcCCChhHHHHHHHHHHHhc-CChhhhccCCchhcCHHHHHHHHH
Confidence 35679999995555999999 999996543 1 345677777 77 9997766 8999999 99999999
Q ss_pred H---------hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCCcccccCcccccccC
Q 001709 836 S---------LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCPYVMPGAVSASLSWG 903 (1022)
Q Consensus 836 A---------LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~~V~~~~~~a~~l~~ 903 (1022)
| +|.||||++ +|.++.+.++..+.+..++...++++|+|.+.+...++..+++-+
T Consensus 154 ARAL~~~P~iilADEPTgn-------------LD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~d 217 (226)
T COG1136 154 ARALINNPKIILADEPTGN-------------LDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKD 217 (226)
T ss_pred HHHHhcCCCeEEeeCcccc-------------CChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeC
Confidence 9 999999996 788888887777766656656688888999988888888877655
No 13
>PLN02454 triacylglycerol lipase
Probab=99.97 E-value=4.7e-31 Score=297.83 Aligned_cols=173 Identities=19% Similarity=0.196 Sum_probs=124.0
Q ss_pred CeEEEEEcCCCCchhhhhhccccccccccccchhhhhhhccccchhhhhccCCCCCCCCCCCCCcccCCCCCCcccHhHH
Q 001709 133 DTLFASFIGTKQYKDVMTDANILQGAIFHEDAIEDMEGIELGESKQAKEQKGNGENRWNPLEKPRQLKDKPKPAAHRGFL 212 (1022)
Q Consensus 133 ~~IVVAFRGT~s~~DwitDl~~~q~~~f~~~~l~~~~~~~a~~~~~~~~q~g~~~~~g~~~~~~k~~~~~~~~~VH~GFl 212 (1022)
+.||||||||.+..||++|+++.+.++-.-..... . + ...-+. ........|.+|+||+||+
T Consensus 130 rdIvVafRGT~t~~eWi~Dl~~~l~~~~~~~~~~~------------~--~--~~~~~~--~~~~~~~~~~~~kVH~GF~ 191 (414)
T PLN02454 130 REIYVAWRGTTRNYEWVDVLGAKLTSADPLLPGPE------------Q--D--GVVSGS--SSDSDDDDEKGPKVMLGWL 191 (414)
T ss_pred ceEEEEECCCCcHHHHHHhccccccccccccCccc------------c--c--cccccc--cccccCCCCCCcEEeHhHH
Confidence 48999999999999999999997655311000000 0 0 000000 0001123478999999999
Q ss_pred HHHh-----------cChhHHH----HHHHhcCCCe--EEEeccChhHHHHHHHHHHHHHHHhhhcccccCCCcceEEEE
Q 001709 213 ARAK-----------GIPALEL----YRLAQKKKRK--LVLCGHSLGGAVAALATLAILRVVAASSSLKENDKVQVKCIT 275 (1022)
Q Consensus 213 ~a~~-----------~I~~~~l----~~l~~~p~yk--LVvTGHSLGGALAtLAAl~LLr~~~~~~~~~~~~~~~V~vyT 275 (1022)
+.|. ++..+++ ..+.+||+++ |++||||||||||+|+|+++.... ......+|.+||
T Consensus 192 ~~Yts~~~~~~f~~~S~r~qvl~~V~~l~~~Yp~~~~sI~vTGHSLGGALAtLaA~di~~~g------~~~~~~~V~~~T 265 (414)
T PLN02454 192 TIYTSDDPRSPFTKLSARSQLLAKIKELLERYKDEKLSIVLTGHSLGASLATLAAFDIVENG------VSGADIPVTAIV 265 (414)
T ss_pred HHhhccCccccchhHHHHHHHHHHHHHHHHhCCCCCceEEEEecCHHHHHHHHHHHHHHHhc------ccccCCceEEEE
Confidence 9997 3443332 2356788876 999999999999999999886421 111234588999
Q ss_pred eCCCccccHHHHHHHHhcCCCceeEEEeeCCCcccccCC-CCccccCCCceeeecC
Q 001709 276 FSQPPVGNAALRDYVNRKGWQHYFKSYCIPEDLVPRILS-PAYFHHYNNVQPLLVS 330 (1022)
Q Consensus 276 FGqPRVGN~aFA~~v~~~~~~~~f~RVVh~~DiVPrLP~-~~~f~H~~~Evw~~~~ 330 (1022)
||+|||||.+|++|+++... ..+.||+|.+|+||++|+ ..+|+|.++|+||+..
T Consensus 266 FGsPRVGN~~Fa~~~~~~~~-~rvlrVvN~~DiVP~lPp~~~gY~HvG~El~id~~ 320 (414)
T PLN02454 266 FGSPQVGNKEFNDRFKEHPN-LKILHVRNTIDLIPHYPGGLLGYVNTGTELVIDTR 320 (414)
T ss_pred eCCCcccCHHHHHHHHhCCC-ceEEEEecCCCeeeeCCCCcCCccccCeEEEECCC
Confidence 99999999999999998742 234589999999999997 4679999999999644
No 14
>PLN02324 triacylglycerol lipase
Probab=99.97 E-value=5.9e-31 Score=296.82 Aligned_cols=162 Identities=15% Similarity=0.192 Sum_probs=120.3
Q ss_pred eEEEEEcCCCCchhhhhhccccccccccccchhhhhhhccccchhhhhccCCCCCCCCCCCCCcccCCCCCCcccHhHHH
Q 001709 134 TLFASFIGTKQYKDVMTDANILQGAIFHEDAIEDMEGIELGESKQAKEQKGNGENRWNPLEKPRQLKDKPKPAAHRGFLA 213 (1022)
Q Consensus 134 ~IVVAFRGT~s~~DwitDl~~~q~~~f~~~~l~~~~~~~a~~~~~~~~q~g~~~~~g~~~~~~k~~~~~~~~~VH~GFl~ 213 (1022)
.||||||||.+..||++|+++.+..... ... + ...+.+|+||+||++
T Consensus 133 dIVVafRGT~t~~eWi~Dl~~~~~~~~~---~~p----------------------~--------~~~~~~~kVH~GFl~ 179 (415)
T PLN02324 133 DIVVAWRGTLQPYEWANDFDFPLESAIS---VFP----------------------V--------TDPKDNPRIGSGWLD 179 (415)
T ss_pred eEEEEEccCCCHHHHHHHhccccccccc---cCC----------------------C--------CCCCCCceeehhHHH
Confidence 8999999999999999999987654200 000 0 001246899999999
Q ss_pred HHhc-----------ChhHHHH----HHHhcCC--CeEEEeccChhHHHHHHHHHHHHHHHhhh-cccccCCCcceEEEE
Q 001709 214 RAKG-----------IPALELY----RLAQKKK--RKLVLCGHSLGGAVAALATLAILRVVAAS-SSLKENDKVQVKCIT 275 (1022)
Q Consensus 214 a~~~-----------I~~~~l~----~l~~~p~--ykLVvTGHSLGGALAtLAAl~LLr~~~~~-~~~~~~~~~~V~vyT 275 (1022)
.|.+ ++.+++. .+.+||+ ++|+|||||||||||+|+|++++...... .+.......+|.+||
T Consensus 180 ~Yts~~~~~~f~k~SareqVl~eV~~L~~~Yp~e~~sItvTGHSLGGALAtLaA~dl~~~~~n~~~~~~~~~~~~V~v~T 259 (415)
T PLN02324 180 IYTASDSRSPYDTTSAQEQVQGELKRLLELYKNEEISITFTGHSLGAVMSVLSAADLVYGKKNKINISLQKKQVPITVFA 259 (415)
T ss_pred HhcCcCcccccchhHHHHHHHHHHHHHHHHCCCCCceEEEecCcHHHHHHHHHHHHHHHhcccccccccccCCCceEEEE
Confidence 9974 4444332 3566775 78999999999999999999986531000 000011245689999
Q ss_pred eCCCccccHHHHHHHHhcCCCceeEEEeeCCCcccccCCCCccccCCCceeeecC
Q 001709 276 FSQPPVGNAALRDYVNRKGWQHYFKSYCIPEDLVPRILSPAYFHHYNNVQPLLVS 330 (1022)
Q Consensus 276 FGqPRVGN~aFA~~v~~~~~~~~f~RVVh~~DiVPrLP~~~~f~H~~~Evw~~~~ 330 (1022)
||+|||||.+||+|+++.. ...++||||.+|+|||+|+ .+|.|.+.|+|++..
T Consensus 260 FGsPRVGN~~Fa~~~~~~~-~~~~~RVvn~~D~VP~lP~-~~Y~hvG~el~Id~~ 312 (415)
T PLN02324 260 FGSPRIGDHNFKNLVDSLQ-PLNILRIVNVPDVAPHYPL-LLYTEIGEVLEINTL 312 (415)
T ss_pred ecCCCcCCHHHHHHHHhcC-CcceEEEEeCCCcCCcCCC-cccccCceEEEEcCC
Confidence 9999999999999999873 3345699999999999995 589999999999743
No 15
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=3.3e-31 Score=296.30 Aligned_cols=212 Identities=19% Similarity=0.241 Sum_probs=166.0
Q ss_pred cccccCceeEEEEecCCCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc--hhhhc
Q 001709 694 FIRPEGLSDVFIFCTSDFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD--QEGIA 768 (1022)
Q Consensus 694 ~i~~~~l~~~~~~~~~~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~--~~~lr 768 (1022)
.++++++++ .+ +...+|+||||+|+ +++|+||||||||||||+|+|++ +|++|+|.++|.++ ....+
T Consensus 6 ~l~~~~l~~---~~--~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~---~p~~G~I~~~g~~i~~~~~~~ 77 (351)
T PRK11432 6 FVVLKNITK---RF--GSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLE---KPTEGQIFIDGEDVTHRSIQQ 77 (351)
T ss_pred EEEEEeEEE---EE--CCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCC---CCCceEEEECCEECCCCCHHH
Confidence 355555554 33 34679999999998 99999999999999999999999 99999999998765 22346
Q ss_pred CceEEEcCCCCCCccccccccchHHHHhcccc-------chHHHHHHHH-HhcCCccccCCCcCCch-HHHHHHHHH---
Q 001709 769 GGLCYCDSAGVNLQELTMEAARFKDEMWMGIR-------DLSRKTDLIV-LVHNLSHKIPRYNYSSA-SGQQQPALS--- 836 (1022)
Q Consensus 769 ~~IGyV~Q~~~~~~~lTV~~~~~~ENI~~g~~-------~~~~~v~~~L-~v~gL~~~~~r~~~~LS-GqrQRvaIA--- 836 (1022)
++||||||+..+|+++|| +|||.|+.+ ...+++++++ .+ ||.++.++++.+|| ||||||+||
T Consensus 78 r~ig~vfQ~~~lfp~~tv-----~eNi~~~l~~~~~~~~~~~~~v~~~l~~~-gl~~~~~r~~~~LSgGq~QRVaLARaL 151 (351)
T PRK11432 78 RDICMVFQSYALFPHMSL-----GENVGYGLKMLGVPKEERKQRVKEALELV-DLAGFEDRYVDQISGGQQQRVALARAL 151 (351)
T ss_pred CCEEEEeCCcccCCCCCH-----HHHHHHHHhHcCCCHHHHHHHHHHHHHHc-CCchhhcCChhhCCHHHHHHHHHHHHH
Confidence 889999996556999999 999999754 1356788888 77 99999999999999 999999999
Q ss_pred ------hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCCcccccCcccccccCCCCC---
Q 001709 837 ------LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCPYVMPGAVSASLSWGASGG--- 907 (1022)
Q Consensus 837 ------LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~~V~~~~~~a~~l~~~~~~--- 907 (1022)
|||||||++ +|...+..+...+.+..++...++++++ |+.+++..+++++.+
T Consensus 152 ~~~P~lLLLDEP~s~-------------LD~~~r~~l~~~l~~l~~~~g~tii~vT------Hd~~e~~~laD~i~vm~~ 212 (351)
T PRK11432 152 ILKPKVLLFDEPLSN-------------LDANLRRSMREKIRELQQQFNITSLYVT------HDQSEAFAVSDTVIVMNK 212 (351)
T ss_pred HcCCCEEEEcCCccc-------------CCHHHHHHHHHHHHHHHHhcCCEEEEEc------CCHHHHHHhCCEEEEEEC
Confidence 999999997 7888888877766555444445666665 777777777777653
Q ss_pred -CCCCCCCCceeeecccccccCCCCCCCCccc
Q 001709 908 -DSDGRSGAQKLLHAPINLVWRPFQRKDNILP 938 (1022)
Q Consensus 908 -~~~~~~~~~~i~~~pi~l~~~pf~~~~~~~~ 938 (1022)
.+.+.+++..++..|.+.+...|.+..++++
T Consensus 213 G~i~~~g~~~~~~~~p~~~~~a~~~g~~n~~~ 244 (351)
T PRK11432 213 GKIMQIGSPQELYRQPASRFMASFMGDANIFP 244 (351)
T ss_pred CEEEEEcCHHHHHhCCCchHHHHhcCCceeEE
Confidence 3333566666777787776777777666554
No 16
>PLN02802 triacylglycerol lipase
Probab=99.97 E-value=6.7e-31 Score=300.89 Aligned_cols=156 Identities=22% Similarity=0.265 Sum_probs=120.7
Q ss_pred CCeEEEEEcCCCCchhhhhhccccccccccccchhhhhhhccccchhhhhccCCCCCCCCCCCCCcccCCCCCCcccHhH
Q 001709 132 GDTLFASFIGTKQYKDVMTDANILQGAIFHEDAIEDMEGIELGESKQAKEQKGNGENRWNPLEKPRQLKDKPKPAAHRGF 211 (1022)
Q Consensus 132 ~~~IVVAFRGT~s~~DwitDl~~~q~~~f~~~~l~~~~~~~a~~~~~~~~q~g~~~~~g~~~~~~k~~~~~~~~~VH~GF 211 (1022)
++.||||||||.+..||++|+++.+.++..... ....|.+|+||+||
T Consensus 250 RRdIVVAFRGT~s~~dWi~DL~~~lvp~~~~~~---------------------------------~~~~~~~~kVH~GF 296 (509)
T PLN02802 250 RRDIVIALRGTATCLEWAENLRAGLVPMPGDDD---------------------------------DAGDQEQPKVECGF 296 (509)
T ss_pred CceEEEEEcCCCCHHHHHHHhccceeecCcccc---------------------------------cccCCCcchHHHHH
Confidence 358999999999999999999987655311100 00025689999999
Q ss_pred HHHHhc-------ChhHHH----HHHHhcCC--CeEEEeccChhHHHHHHHHHHHHHHHhhhcccccCCCcceEEEEeCC
Q 001709 212 LARAKG-------IPALEL----YRLAQKKK--RKLVLCGHSLGGAVAALATLAILRVVAASSSLKENDKVQVKCITFSQ 278 (1022)
Q Consensus 212 l~a~~~-------I~~~~l----~~l~~~p~--ykLVvTGHSLGGALAtLAAl~LLr~~~~~~~~~~~~~~~V~vyTFGq 278 (1022)
+..|.. ++++++ ..+.+|++ ++|+|||||||||||+|+|+++.... ....+|.|||||+
T Consensus 297 l~~Yts~~~~~~S~reqVl~eV~~Ll~~Y~~e~~sI~VTGHSLGGALAtLaA~dL~~~~--------~~~~pV~vyTFGs 368 (509)
T PLN02802 297 LSLYKTAGAHVPSLSESVVGEVRRLMEKYKGEELSITVTGHSLGAALALLVADELATCV--------PAAPPVAVFSFGG 368 (509)
T ss_pred HHHHHhhccccchHHHHHHHHHHHHHHhCCCCcceEEEeccchHHHHHHHHHHHHHHhC--------CCCCceEEEEcCC
Confidence 999984 233332 23556765 68999999999999999999885421 1123689999999
Q ss_pred CccccHHHHHHHHhcCCCceeEEEeeCCCcccccCCC--------CccccCCCceeeecC
Q 001709 279 PPVGNAALRDYVNRKGWQHYFKSYCIPEDLVPRILSP--------AYFHHYNNVQPLLVS 330 (1022)
Q Consensus 279 PRVGN~aFA~~v~~~~~~~~f~RVVh~~DiVPrLP~~--------~~f~H~~~Evw~~~~ 330 (1022)
|||||.+|+++++..+ ..++||||.+|+||++|+. .+|+|.++|+||+..
T Consensus 369 PRVGN~aFA~~~~~~~--~~~~RVVN~~DiVP~lPp~~~~~~~~~~gY~HvG~El~Id~~ 426 (509)
T PLN02802 369 PRVGNRAFADRLNARG--VKVLRVVNAQDVVTRVPGIAPREELHKWAYAHVGAELRLDSK 426 (509)
T ss_pred CCcccHHHHHHHHhcC--CcEEEEecCCCeecccCccccccccCCcCceecCEEEEECCC
Confidence 9999999999997653 3456999999999999974 379999999999764
No 17
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.97 E-value=3.1e-31 Score=296.63 Aligned_cols=211 Identities=20% Similarity=0.203 Sum_probs=163.8
Q ss_pred ccccCceeEEEEecCCCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc--hhhhcC
Q 001709 695 IRPEGLSDVFIFCTSDFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD--QEGIAG 769 (1022)
Q Consensus 695 i~~~~l~~~~~~~~~~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~--~~~lr~ 769 (1022)
++++++++ .+ +...+|+||||+++ +++|+||||||||||||+|+|++ +|++|+|.++|.++ ....++
T Consensus 5 l~~~~l~~---~~--~~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~---~p~~G~I~i~g~~~~~~~~~~r 76 (353)
T TIGR03265 5 LSIDNIRK---RF--GAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLE---RQTAGTIYQGGRDITRLPPQKR 76 (353)
T ss_pred EEEEEEEE---Ee--CCeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCC---CCCceEEEECCEECCCCCHHHC
Confidence 44445554 32 34679999999998 99999999999999999999999 99999999998765 223467
Q ss_pred ceEEEcCCCCCCccccccccchHHHHhccccc-------hHHHHHHHH-HhcCCccccCCCcCCch-HHHHHHHHH----
Q 001709 770 GLCYCDSAGVNLQELTMEAARFKDEMWMGIRD-------LSRKTDLIV-LVHNLSHKIPRYNYSSA-SGQQQPALS---- 836 (1022)
Q Consensus 770 ~IGyV~Q~~~~~~~lTV~~~~~~ENI~~g~~~-------~~~~v~~~L-~v~gL~~~~~r~~~~LS-GqrQRvaIA---- 836 (1022)
.||||||+..+||++|| +|||.|+... ..+++++++ .+ ||.++.++++.+|| ||||||+||
T Consensus 77 ~ig~v~Q~~~lfp~~tv-----~eNi~~~~~~~~~~~~~~~~~~~~~l~~l-~L~~~~~~~~~~LSgGq~QRvaLARaL~ 150 (353)
T TIGR03265 77 DYGIVFQSYALFPNLTV-----ADNIAYGLKNRGMGRAEVAERVAELLDLV-GLPGSERKYPGQLSGGQQQRVALARALA 150 (353)
T ss_pred CEEEEeCCcccCCCCcH-----HHHHHHHHHhcCCCHHHHHHHHHHHHHHc-CCCchhhCChhhCCHHHHHHHHHHHHHh
Confidence 89999996556999999 9999997541 356788899 87 99999999999999 999999999
Q ss_pred -----hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCCcccccCcccccccCCCCC----
Q 001709 837 -----LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCPYVMPGAVSASLSWGASGG---- 907 (1022)
Q Consensus 837 -----LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~~V~~~~~~a~~l~~~~~~---- 907 (1022)
|||||||++ +|...+..+...+.+..++..-++++++ |+.+++..+++++..
T Consensus 151 ~~P~llLLDEP~s~-------------LD~~~r~~l~~~L~~l~~~~~~tvi~vT------Hd~~ea~~l~d~i~vl~~G 211 (353)
T TIGR03265 151 TSPGLLLLDEPLSA-------------LDARVREHLRTEIRQLQRRLGVTTIMVT------HDQEEALSMADRIVVMNHG 211 (353)
T ss_pred cCCCEEEEcCCccc-------------CCHHHHHHHHHHHHHHHHhcCCEEEEEc------CCHHHHHHhCCEEEEEECC
Confidence 999999997 7888888877777655554444666665 666666666666543
Q ss_pred CCCCCCCCceeeecccccccCCCCCCCCccc
Q 001709 908 DSDGRSGAQKLLHAPINLVWRPFQRKDNILP 938 (1022)
Q Consensus 908 ~~~~~~~~~~i~~~pi~l~~~pf~~~~~~~~ 938 (1022)
.+.+.+++..++..|.+.+...|.+..++++
T Consensus 212 ~i~~~g~~~~~~~~p~~~~~a~~~g~~n~~~ 242 (353)
T TIGR03265 212 VIEQVGTPQEIYRHPATPFVADFVGEVNWLP 242 (353)
T ss_pred EEEEEcCHHHHHhCCCCHHHHHhcCCCcEEE
Confidence 3333556666777777666666666655554
No 18
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.97 E-value=1.6e-30 Score=279.28 Aligned_cols=177 Identities=18% Similarity=0.171 Sum_probs=143.3
Q ss_pred eeEEEEecCCCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc----hhhhcCceEE
Q 001709 701 SDVFIFCTSDFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD----QEGIAGGLCY 773 (1022)
Q Consensus 701 ~~~~~~~~~~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~----~~~lr~~IGy 773 (1022)
+++++.| +++++|+||||+|+ +++||||||||||||||+|+|++ +|.+|+|++||.++ .+++++.|||
T Consensus 6 ~~ls~~y--~~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l---~p~~G~V~l~g~~i~~~~~kelAk~ia~ 80 (258)
T COG1120 6 ENLSFGY--GGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLL---KPKSGEVLLDGKDIASLSPKELAKKLAY 80 (258)
T ss_pred EEEEEEE--CCeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccC---CCCCCEEEECCCchhhcCHHHHhhhEEE
Confidence 4444444 47899999999999 99999999999999999999999 99999999998775 6678999999
Q ss_pred EcCCCCCCccccccccchHHHHhccccc-----------hHHHHHHHH-HhcCCccccCCCcCCch-HHHHHHHHH----
Q 001709 774 CDSAGVNLQELTMEAARFKDEMWMGIRD-----------LSRKTDLIV-LVHNLSHKIPRYNYSSA-SGQQQPALS---- 836 (1022)
Q Consensus 774 V~Q~~~~~~~lTV~~~~~~ENI~~g~~~-----------~~~~v~~~L-~v~gL~~~~~r~~~~LS-GqrQRvaIA---- 836 (1022)
|||.....+.+|| +|-+.+|+.. +.+.++++| .+ |+.++++|...+|| ||||||.||
T Consensus 81 vpQ~~~~~~~~tV-----~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~-~~~~la~r~~~~LSGGerQrv~iArALa 154 (258)
T COG1120 81 VPQSPSAPFGLTV-----YELVLLGRYPHLGLFGRPSKEDEEIVEEALELL-GLEHLADRPVDELSGGERQRVLIARALA 154 (258)
T ss_pred eccCCCCCCCcEE-----eehHhhcCCcccccccCCCHhHHHHHHHHHHHh-CcHHHhcCcccccChhHHHHHHHHHHHh
Confidence 9995444566999 9999999762 445788889 77 99999999999999 999999999
Q ss_pred -----hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCCcccccCcccccccCCCCC
Q 001709 837 -----LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCPYVMPGAVSASLSWGASGG 907 (1022)
Q Consensus 837 -----LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~~V~~~~~~a~~l~~~~~~ 907 (1022)
|||||||+. ||..+|.++++.+.+.-++. +.++|+ ++|+.+.|...+|+...
T Consensus 155 Q~~~iLLLDEPTs~-------------LDi~~Q~evl~ll~~l~~~~-~~tvv~-----vlHDlN~A~ryad~~i~ 211 (258)
T COG1120 155 QETPILLLDEPTSH-------------LDIAHQIEVLELLRDLNREK-GLTVVM-----VLHDLNLAARYADHLIL 211 (258)
T ss_pred cCCCEEEeCCCccc-------------cCHHHHHHHHHHHHHHHHhc-CCEEEE-----EecCHHHHHHhCCEEEE
Confidence 999999996 66677777776664444443 444444 24777777777776543
No 19
>cd00519 Lipase_3 Lipase (class 3). Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=99.97 E-value=6.6e-30 Score=267.02 Aligned_cols=148 Identities=27% Similarity=0.329 Sum_probs=120.7
Q ss_pred cCCeEEEEEcCCCCchhhhhhccccccccccccchhhhhhhccccchhhhhccCCCCCCCCCCCCCcccCCCCCCcccHh
Q 001709 131 AGDTLFASFIGTKQYKDVMTDANILQGAIFHEDAIEDMEGIELGESKQAKEQKGNGENRWNPLEKPRQLKDKPKPAAHRG 210 (1022)
Q Consensus 131 ~~~~IVVAFRGT~s~~DwitDl~~~q~~~f~~~~l~~~~~~~a~~~~~~~~q~g~~~~~g~~~~~~k~~~~~~~~~VH~G 210 (1022)
+.++|+|+||||.+..||++|+.+....+- ...+.+|+||+|
T Consensus 61 ~~~~ivva~RGT~~~~d~~~d~~~~~~~~~--------------------------------------~~~~~~~~vh~G 102 (229)
T cd00519 61 DRKTIVIAFRGTVSLADWLTDLDFSPVPLD--------------------------------------PPLCSGGKVHSG 102 (229)
T ss_pred CCCeEEEEEeCCCchHHHHHhcccccccCC--------------------------------------CCCCCCcEEcHH
Confidence 458999999999999999999987653320 011467899999
Q ss_pred HHHHHhcChhHH----HHHHHhcCCCeEEEeccChhHHHHHHHHHHHHHHHhhhcccccCCCcceEEEEeCCCccccHHH
Q 001709 211 FLARAKGIPALE----LYRLAQKKKRKLVLCGHSLGGAVAALATLAILRVVAASSSLKENDKVQVKCITFSQPPVGNAAL 286 (1022)
Q Consensus 211 Fl~a~~~I~~~~----l~~l~~~p~ykLVvTGHSLGGALAtLAAl~LLr~~~~~~~~~~~~~~~V~vyTFGqPRVGN~aF 286 (1022)
|+.+|..+.... ...+.++|+|+|++||||||||+|+|+++.+.... ...++.|||||+||+||.+|
T Consensus 103 f~~~~~~~~~~~~~~~~~~~~~~p~~~i~vtGHSLGGaiA~l~a~~l~~~~---------~~~~i~~~tFg~P~vg~~~~ 173 (229)
T cd00519 103 FYSAYKSLYNQVLPELKSALKQYPDYKIIVTGHSLGGALASLLALDLRLRG---------PGSDVTVYTFGQPRVGNAAF 173 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCceEEEEccCHHHHHHHHHHHHHHhhC---------CCCceEEEEeCCCCCCCHHH
Confidence 999998876543 23466789999999999999999999998875321 24568999999999999999
Q ss_pred HHHHHhcCCCceeEEEeeCCCcccccCCC-----CccccCCCceee
Q 001709 287 RDYVNRKGWQHYFKSYCIPEDLVPRILSP-----AYFHHYNNVQPL 327 (1022)
Q Consensus 287 A~~v~~~~~~~~f~RVVh~~DiVPrLP~~-----~~f~H~~~Evw~ 327 (1022)
++|.+.. ...++||+|.+|+||++|+. ..|+|+++|+|+
T Consensus 174 a~~~~~~--~~~~~rvv~~~D~Vp~lp~~~~~~~~~~~h~~~e~~~ 217 (229)
T cd00519 174 AEYLEST--KGRVYRVVHGNDIVPRLPPGSLTPPEGYTHVGTEVWI 217 (229)
T ss_pred HHHhhcc--CCCEEEEEECCCcccccCcccccCCcccEecCceEEE
Confidence 9996654 34567999999999999975 379999999999
No 20
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.97 E-value=1.2e-30 Score=294.25 Aligned_cols=211 Identities=17% Similarity=0.153 Sum_probs=165.3
Q ss_pred ccccCceeEEEEecCCCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc--hhhhcC
Q 001709 695 IRPEGLSDVFIFCTSDFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD--QEGIAG 769 (1022)
Q Consensus 695 i~~~~l~~~~~~~~~~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~--~~~lr~ 769 (1022)
++++++++ .+ +..++|++|||+++ +++|+||||||||||||+|+|++ +|++|+|.++|.++ ....++
T Consensus 15 L~l~~l~~---~~--~~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~---~p~~G~I~~~g~~i~~~~~~~r 86 (375)
T PRK09452 15 VELRGISK---SF--DGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFE---TPDSGRIMLDGQDITHVPAENR 86 (375)
T ss_pred EEEEEEEE---EE--CCeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCC---CCCceEEEECCEECCCCCHHHC
Confidence 55455543 33 34679999999998 99999999999999999999999 99999999998765 223357
Q ss_pred ceEEEcCCCCCCccccccccchHHHHhccccc-------hHHHHHHHH-HhcCCccccCCCcCCch-HHHHHHHHH----
Q 001709 770 GLCYCDSAGVNLQELTMEAARFKDEMWMGIRD-------LSRKTDLIV-LVHNLSHKIPRYNYSSA-SGQQQPALS---- 836 (1022)
Q Consensus 770 ~IGyV~Q~~~~~~~lTV~~~~~~ENI~~g~~~-------~~~~v~~~L-~v~gL~~~~~r~~~~LS-GqrQRvaIA---- 836 (1022)
.||||||+..+|+++|| +|||.|+... ..+++++++ .+ ||.++.++++.+|| ||||||+||
T Consensus 87 ~ig~vfQ~~~lfp~ltv-----~eNi~~~l~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~p~~LSgGq~QRVaLARaL~ 160 (375)
T PRK09452 87 HVNTVFQSYALFPHMTV-----FENVAFGLRMQKTPAAEITPRVMEALRMV-QLEEFAQRKPHQLSGGQQQRVAIARAVV 160 (375)
T ss_pred CEEEEecCcccCCCCCH-----HHHHHHHHhhcCCCHHHHHHHHHHHHHHc-CCchhhhCChhhCCHHHHHHHHHHHHHh
Confidence 89999996556999999 9999997641 245678888 77 99999999999999 999999999
Q ss_pred -----hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCCcccccCcccccccCCCCC----
Q 001709 837 -----LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCPYVMPGAVSASLSWGASGG---- 907 (1022)
Q Consensus 837 -----LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~~V~~~~~~a~~l~~~~~~---- 907 (1022)
|||||||++ +|...+..+...+.+..++...++++++ |+.+++..++|++..
T Consensus 161 ~~P~llLLDEP~s~-------------LD~~~r~~l~~~L~~l~~~~g~tiI~vT------Hd~~ea~~laDri~vl~~G 221 (375)
T PRK09452 161 NKPKVLLLDESLSA-------------LDYKLRKQMQNELKALQRKLGITFVFVT------HDQEEALTMSDRIVVMRDG 221 (375)
T ss_pred cCCCEEEEeCCCCc-------------CCHHHHHHHHHHHHHHHHhcCCEEEEEe------CCHHHHHHhCCEEEEEECC
Confidence 999999997 7888888877776555554445666665 666666666776643
Q ss_pred CCCCCCCCceeeecccccccCCCCCCCCccc
Q 001709 908 DSDGRSGAQKLLHAPINLVWRPFQRKDNILP 938 (1022)
Q Consensus 908 ~~~~~~~~~~i~~~pi~l~~~pf~~~~~~~~ 938 (1022)
.+.+.+++..++..|.+.+.+.|.+..++++
T Consensus 222 ~i~~~g~~~~i~~~p~~~~~a~~~g~~n~~~ 252 (375)
T PRK09452 222 RIEQDGTPREIYEEPKNLFVARFIGEINIFD 252 (375)
T ss_pred EEEEEcCHHHHHhCcccHHHHHhcCccceee
Confidence 3333566667777888777777777666554
No 21
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=1.1e-30 Score=294.66 Aligned_cols=212 Identities=15% Similarity=0.183 Sum_probs=165.3
Q ss_pred cccccCceeEEEEecCCCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc--hhhhc
Q 001709 694 FIRPEGLSDVFIFCTSDFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD--QEGIA 768 (1022)
Q Consensus 694 ~i~~~~l~~~~~~~~~~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~--~~~lr 768 (1022)
.++++++++. + +..++|+++||+|+ +++|+||||||||||||+|+|++ +|++|+|+++|.++ ....+
T Consensus 19 ~l~l~~v~~~---~--~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~---~p~~G~I~i~g~~i~~~~~~~ 90 (377)
T PRK11607 19 LLEIRNLTKS---F--DGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFE---QPTAGQIMLDGVDLSHVPPYQ 90 (377)
T ss_pred eEEEEeEEEE---E--CCEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC---CCCceEEEECCEECCCCCHHH
Confidence 3665556542 2 34679999999998 99999999999999999999999 99999999998765 23346
Q ss_pred CceEEEcCCCCCCccccccccchHHHHhccccc-------hHHHHHHHH-HhcCCccccCCCcCCch-HHHHHHHHH---
Q 001709 769 GGLCYCDSAGVNLQELTMEAARFKDEMWMGIRD-------LSRKTDLIV-LVHNLSHKIPRYNYSSA-SGQQQPALS--- 836 (1022)
Q Consensus 769 ~~IGyV~Q~~~~~~~lTV~~~~~~ENI~~g~~~-------~~~~v~~~L-~v~gL~~~~~r~~~~LS-GqrQRvaIA--- 836 (1022)
+.||||||+..+|+++|| .|||.|+... ..+++.+++ .+ +|.++.++++.+|| ||||||+||
T Consensus 91 r~ig~vfQ~~~lfp~ltv-----~eNi~~~l~~~~~~~~~~~~~v~~~l~~l-~L~~~~~~~~~~LSgGq~QRVaLARAL 164 (377)
T PRK11607 91 RPINMMFQSYALFPHMTV-----EQNIAFGLKQDKLPKAEIASRVNEMLGLV-HMQEFAKRKPHQLSGGQRQRVALARSL 164 (377)
T ss_pred CCEEEEeCCCccCCCCCH-----HHHHHHHHHHcCCCHHHHHHHHHHHHHHc-CCchhhcCChhhCCHHHHHHHHHHHHH
Confidence 789999996666999999 9999997541 345678888 77 99999999999999 999999999
Q ss_pred ------hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCCcccccCcccccccCCCC----
Q 001709 837 ------LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCPYVMPGAVSASLSWGASG---- 906 (1022)
Q Consensus 837 ------LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~~V~~~~~~a~~l~~~~~---- 906 (1022)
|||||||++ +|...+..+...+.+..++...++++++ |+.+++..++|++.
T Consensus 165 ~~~P~lLLLDEP~s~-------------LD~~~r~~l~~~l~~l~~~~g~tii~vT------Hd~~ea~~laDri~vl~~ 225 (377)
T PRK11607 165 AKRPKLLLLDEPMGA-------------LDKKLRDRMQLEVVDILERVGVTCVMVT------HDQEEAMTMAGRIAIMNR 225 (377)
T ss_pred hcCCCEEEEeCCccc-------------CCHHHHHHHHHHHHHHHHhcCCEEEEEc------CCHHHHHHhCCEEEEEeC
Confidence 999999997 7777787777766665554444555555 66666666777664
Q ss_pred CCCCCCCCCceeeecccccccCCCCCCCCccc
Q 001709 907 GDSDGRSGAQKLLHAPINLVWRPFQRKDNILP 938 (1022)
Q Consensus 907 ~~~~~~~~~~~i~~~pi~l~~~pf~~~~~~~~ 938 (1022)
+.+.+.+++..++..|.+.+.+.|.+..+++.
T Consensus 226 G~i~~~g~~~~~~~~p~~~~~a~~~g~~n~~~ 257 (377)
T PRK11607 226 GKFVQIGEPEEIYEHPTTRYSAEFIGSVNVFE 257 (377)
T ss_pred CEEEEEcCHHHHHhCCccHHHHHhcCccccee
Confidence 33334566667777777776667776655543
No 22
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.97 E-value=2.5e-31 Score=288.57 Aligned_cols=205 Identities=17% Similarity=0.143 Sum_probs=174.5
Q ss_pred EecCCCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc----h---hh-hcCceEEE
Q 001709 706 FCTSDFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD----Q---EG-IAGGLCYC 774 (1022)
Q Consensus 706 ~~~~~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~----~---~~-lr~~IGyV 774 (1022)
+...+-...++|+||+|+ ++.|+|.||||||||+|+|+||+ +|+.|+|+++|.++ . .+ .|++++||
T Consensus 35 ~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLi---ept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMV 111 (386)
T COG4175 35 LKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLI---EPTRGEILVDGKDIAKLSAAELRELRRKKISMV 111 (386)
T ss_pred HHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccC---CCCCceEEECCcchhcCCHHHHHHHHhhhhhhh
Confidence 333444557999999999 99999999999999999999999 99999999998775 2 22 35689999
Q ss_pred cCCCCCCccccccccchHHHHhcccc-------chHHHHHHHH-HhcCCccccCCCcCCch-HHHHHHHHH---------
Q 001709 775 DSAGVNLQELTMEAARFKDEMWMGIR-------DLSRKTDLIV-LVHNLSHKIPRYNYSSA-SGQQQPALS--------- 836 (1022)
Q Consensus 775 ~Q~~~~~~~lTV~~~~~~ENI~~g~~-------~~~~~v~~~L-~v~gL~~~~~r~~~~LS-GqrQRvaIA--------- 836 (1022)
||+-.++||.|| .||+.||++ +.++++.++| .| ||+++.++||++|| ||||||.||
T Consensus 112 FQ~FaLlPhrtV-----l~Nv~fGLev~Gv~~~er~~~a~~~l~~V-gL~~~~~~yp~eLSGGMqQRVGLARAla~~~~I 185 (386)
T COG4175 112 FQSFALLPHRTV-----LENVAFGLEVQGVPKAEREERALEALELV-GLEGYADKYPNELSGGMQQRVGLARALANDPDI 185 (386)
T ss_pred hhhhccccchhH-----hhhhhcceeecCCCHHHHHHHHHHHHHHc-CchhhhhcCcccccchHHHHHHHHHHHccCCCE
Confidence 996555999999 999999987 2567788999 88 99999999999999 999999999
Q ss_pred hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCCcccccCcccccccCCCC----CCCCCC
Q 001709 837 LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCPYVMPGAVSASLSWGASG----GDSDGR 912 (1022)
Q Consensus 837 LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~~V~~~~~~a~~l~~~~~----~~~~~~ 912 (1022)
||||||||| ||+--|.++.+.+++.-..-+.|+++|+ |+.+||+-+.+|.. +.+.|.
T Consensus 186 lLMDEaFSA-------------LDPLIR~~mQdeLl~Lq~~l~KTIvFit------HDLdEAlriG~rIaimkdG~ivQ~ 246 (386)
T COG4175 186 LLMDEAFSA-------------LDPLIRTEMQDELLELQAKLKKTIVFIT------HDLDEALRIGDRIAIMKDGEIVQV 246 (386)
T ss_pred EEecCchhh-------------cChHHHHHHHHHHHHHHHHhCCeEEEEe------cCHHHHHhccceEEEecCCeEEEe
Confidence 999999998 6667788888888887777778888887 99999999999985 666678
Q ss_pred CCCceeeecccccccCCCCCCCCccc
Q 001709 913 SGAQKLLHAPINLVWRPFQRKDNILP 938 (1022)
Q Consensus 913 ~~~~~i~~~pi~l~~~pf~~~~~~~~ 938 (1022)
++++.|+..|.|-..+.|.+.-+...
T Consensus 247 Gtp~eIl~~PAndYV~~Fv~~v~~~~ 272 (386)
T COG4175 247 GTPEEILLNPANDYVRDFVRNVDRSR 272 (386)
T ss_pred CCHHHHHcCccHHHHHHHHhcCChhh
Confidence 99999999998876777766544333
No 23
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=4.1e-30 Score=275.27 Aligned_cols=179 Identities=19% Similarity=0.175 Sum_probs=141.3
Q ss_pred ceeEEEEecCCCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc-hhhhcCceEEEc
Q 001709 700 LSDVFIFCTSDFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD-QEGIAGGLCYCD 775 (1022)
Q Consensus 700 l~~~~~~~~~~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~-~~~lr~~IGyV~ 775 (1022)
++++.+.|... +||+||||+|+ +++|+||||||||||+|+|+|++ +|++|+|.+++.+. ...-+..|||||
T Consensus 7 v~nl~v~y~~~--~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll---~p~~G~i~~~g~~~~~~~~~~~IgYVP 81 (254)
T COG1121 7 VENLTVSYGNR--PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLL---KPSSGEIKIFGKPVRKRRKRLRIGYVP 81 (254)
T ss_pred EeeeEEEECCE--eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC---cCCcceEEEccccccccccCCeEEEcC
Confidence 44545555432 69999999999 99999999999999999999999 99999999998765 222357899999
Q ss_pred CCCCC---CccccccccchHHHHhccccc-----------hHHHHHHHH-HhcCCccccCCCcCCch-HHHHHHHHH---
Q 001709 776 SAGVN---LQELTMEAARFKDEMWMGIRD-----------LSRKTDLIV-LVHNLSHKIPRYNYSSA-SGQQQPALS--- 836 (1022)
Q Consensus 776 Q~~~~---~~~lTV~~~~~~ENI~~g~~~-----------~~~~v~~~L-~v~gL~~~~~r~~~~LS-GqrQRvaIA--- 836 (1022)
|.... || .|| +|-+.+|... +.++++++| .+ ||.++.++.+.+|| ||+|||.||
T Consensus 82 Q~~~~d~~fP-~tV-----~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~V-gm~~~~~r~i~~LSGGQ~QRV~lARAL 154 (254)
T COG1121 82 QKSSVDRSFP-ITV-----KDVVLLGRYGKKGWFRRLNKKDKEKVDEALERV-GMEDLRDRQIGELSGGQKQRVLLARAL 154 (254)
T ss_pred cccccCCCCC-cCH-----HHHHHccCcccccccccccHHHHHHHHHHHHHc-CchhhhCCcccccCcHHHHHHHHHHHh
Confidence 94322 66 899 9999998541 457899999 99 99999999999999 999999999
Q ss_pred ------hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEe-cCCcccccCcccccccCC
Q 001709 837 ------LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVIN-SCPYVMPGAVSASLSWGA 904 (1022)
Q Consensus 837 ------LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~-~~~~V~~~~~~a~~l~~~ 904 (1022)
|||||||++ +|...+..+.+.+ +.++....++++++ .-..|+..+|.++.+-..
T Consensus 155 ~~~p~lllLDEP~~g-------------vD~~~~~~i~~lL-~~l~~eg~tIl~vtHDL~~v~~~~D~vi~Ln~~ 215 (254)
T COG1121 155 AQNPDLLLLDEPFTG-------------VDVAGQKEIYDLL-KELRQEGKTVLMVTHDLGLVMAYFDRVICLNRH 215 (254)
T ss_pred ccCCCEEEecCCccc-------------CCHHHHHHHHHHH-HHHHHCCCEEEEEeCCcHHhHhhCCEEEEEcCe
Confidence 999999997 8888888777655 45555555666664 334444455555555443
No 24
>PLN02310 triacylglycerol lipase
Probab=99.97 E-value=3.5e-30 Score=290.40 Aligned_cols=146 Identities=23% Similarity=0.316 Sum_probs=115.9
Q ss_pred CeEEEEEcCCCCchhhhhhccccccccccccchhhhhhhccccchhhhhccCCCCCCCCCCCCCcccCCCCCCcccHhHH
Q 001709 133 DTLFASFIGTKQYKDVMTDANILQGAIFHEDAIEDMEGIELGESKQAKEQKGNGENRWNPLEKPRQLKDKPKPAAHRGFL 212 (1022)
Q Consensus 133 ~~IVVAFRGT~s~~DwitDl~~~q~~~f~~~~l~~~~~~~a~~~~~~~~q~g~~~~~g~~~~~~k~~~~~~~~~VH~GFl 212 (1022)
+.||||||||.+..||++|+++.+..+ .|.+|+||+||+
T Consensus 132 rdIVVAfRGT~s~~dWi~Dl~~~l~~~-----------------------------------------~~~~~kVH~GF~ 170 (405)
T PLN02310 132 RDIMVAWRGTVAPSEWFLDLETKLEHI-----------------------------------------DNTNVKVQEGFL 170 (405)
T ss_pred ceEEEEECCCCCHHHHHHhcccceecC-----------------------------------------CCCCCEeeHhHH
Confidence 489999999999999999999865321 135789999999
Q ss_pred HHHhcC-----------hhHHHH----HHHh----cCCCeEEEeccChhHHHHHHHHHHHHHHHhhhcccccCCCcceEE
Q 001709 213 ARAKGI-----------PALELY----RLAQ----KKKRKLVLCGHSLGGAVAALATLAILRVVAASSSLKENDKVQVKC 273 (1022)
Q Consensus 213 ~a~~~I-----------~~~~l~----~l~~----~p~ykLVvTGHSLGGALAtLAAl~LLr~~~~~~~~~~~~~~~V~v 273 (1022)
..|.+. ..+++. .+.. +++++|+|||||||||||+|+|+++.... ...++.+
T Consensus 171 ~~Y~s~~~~~~~~~~sa~~qVl~eV~~L~~~y~~~~e~~sI~vTGHSLGGALAtLaA~dl~~~~---------~~~~v~v 241 (405)
T PLN02310 171 KIYKSKDESTRYNKLSASEQVMQEVKRLVNFYRGKGEEVSLTVTGHSLGGALALLNAYEAATTI---------PDLFVSV 241 (405)
T ss_pred HHHhCcCcccccccchHHHHHHHHHHHHHHhhcccCCcceEEEEcccHHHHHHHHHHHHHHHhC---------cCcceeE
Confidence 999863 222222 2333 35789999999999999999998875421 2446899
Q ss_pred EEeCCCccccHHHHHHHHhcCCCceeEEEeeCCCcccccCCC----------------CccccCCCceeeecC
Q 001709 274 ITFSQPPVGNAALRDYVNRKGWQHYFKSYCIPEDLVPRILSP----------------AYFHHYNNVQPLLVS 330 (1022)
Q Consensus 274 yTFGqPRVGN~aFA~~v~~~~~~~~f~RVVh~~DiVPrLP~~----------------~~f~H~~~Evw~~~~ 330 (1022)
||||+|||||.+|++++++.+. .+.||||.+|+||++|+. ..|.|.|.|++++..
T Consensus 242 yTFGsPRVGN~~Fa~~~~~~~~--~~~RVvn~~DiVP~lPp~~~~~~~~~~~~~~~~~~~Y~HvG~el~lD~~ 312 (405)
T PLN02310 242 ISFGAPRVGNIAFKEKLNELGV--KTLRVVVKQDKVPKLPGLLNKMLNKFHGLTGKLNWVYRHVGTQLKLDAF 312 (405)
T ss_pred EEecCCCcccHHHHHHHHhcCC--CEEEEEECCCccCccCcchhhchhhhccccccCceeEeccceEEEECCC
Confidence 9999999999999999998743 345999999999999962 259999999999753
No 25
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=1.7e-30 Score=290.90 Aligned_cols=195 Identities=14% Similarity=0.136 Sum_probs=151.0
Q ss_pred CeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc--hhhhcCceEEEcCCCCCCcccc
Q 001709 711 FTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD--QEGIAGGLCYCDSAGVNLQELT 785 (1022)
Q Consensus 711 ~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~--~~~lr~~IGyV~Q~~~~~~~lT 785 (1022)
.+.+|+||||+++ +++|+||||||||||||+|+|++ +|++|+|.++|.++ ....+++||||||+..+|+++|
T Consensus 16 ~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~---~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~lfp~~t 92 (356)
T PRK11650 16 KTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLE---RITSGEIWIGGRVVNELEPADRDIAMVFQNYALYPHMS 92 (356)
T ss_pred CCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCC---CCCceEEEECCEECCCCCHHHCCEEEEeCCccccCCCC
Confidence 4679999999998 99999999999999999999999 99999999998765 2233578999999655599999
Q ss_pred ccccchHHHHhccccc-------hHHHHHHHH-HhcCCccccCCCcCCch-HHHHHHHHH---------hhhccccCCCh
Q 001709 786 MEAARFKDEMWMGIRD-------LSRKTDLIV-LVHNLSHKIPRYNYSSA-SGQQQPALS---------LLLNEAKSLGI 847 (1022)
Q Consensus 786 V~~~~~~ENI~~g~~~-------~~~~v~~~L-~v~gL~~~~~r~~~~LS-GqrQRvaIA---------LLLDEPTSad~ 847 (1022)
| +|||.|+.+. ..+++++++ .+ ||.++.++++.+|| ||||||+|| ||||||||+
T Consensus 93 v-----~eNi~~~~~~~~~~~~~~~~~~~~~l~~~-gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~llLLDEP~s~-- 164 (356)
T PRK11650 93 V-----RENMAYGLKIRGMPKAEIEERVAEAARIL-ELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSN-- 164 (356)
T ss_pred H-----HHHHHhHHhhcCCCHHHHHHHHHHHHHHc-CChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCccc--
Confidence 9 9999997641 245678888 87 99999999999999 999999999 999999997
Q ss_pred hHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCCcccccCcccccccCCCCC----CCCCCCCCceeeeccc
Q 001709 848 PWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCPYVMPGAVSASLSWGASGG----DSDGRSGAQKLLHAPI 923 (1022)
Q Consensus 848 ~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~~V~~~~~~a~~l~~~~~~----~~~~~~~~~~i~~~pi 923 (1022)
+|...+..+...+.+..++..-++++++ |+.+++..++|++.. .+.+.+++..++..|.
T Consensus 165 -----------LD~~~r~~l~~~l~~l~~~~g~tii~vT------Hd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~~p~ 227 (356)
T PRK11650 165 -----------LDAKLRVQMRLEIQRLHRRLKTTSLYVT------HDQVEAMTLADRVVVMNGGVAEQIGTPVEVYEKPA 227 (356)
T ss_pred -----------CCHHHHHHHHHHHHHHHHhcCCEEEEEe------CCHHHHHHhCCEEEEEeCCEEEEECCHHHHHhCCc
Confidence 7777788777776554444445666665 666666666666543 2223455555666665
Q ss_pred ccccCCCCCC
Q 001709 924 NLVWRPFQRK 933 (1022)
Q Consensus 924 ~l~~~pf~~~ 933 (1022)
+.+...|.+.
T Consensus 228 ~~~~~~~~g~ 237 (356)
T PRK11650 228 STFVASFIGS 237 (356)
T ss_pred cHHHHHHcCC
Confidence 5444444443
No 26
>PLN02571 triacylglycerol lipase
Probab=99.97 E-value=4e-30 Score=290.59 Aligned_cols=160 Identities=19% Similarity=0.262 Sum_probs=119.2
Q ss_pred CeEEEEEcCCCCchhhhhhccccccccccccchhhhhhhccccchhhhhccCCCCCCCCCCCCCcccCCCCCCcccHhHH
Q 001709 133 DTLFASFIGTKQYKDVMTDANILQGAIFHEDAIEDMEGIELGESKQAKEQKGNGENRWNPLEKPRQLKDKPKPAAHRGFL 212 (1022)
Q Consensus 133 ~~IVVAFRGT~s~~DwitDl~~~q~~~f~~~~l~~~~~~~a~~~~~~~~q~g~~~~~g~~~~~~k~~~~~~~~~VH~GFl 212 (1022)
+.||||||||.+..||++|+++.+.++-. . .+. ....|+||+||+
T Consensus 145 rdIVVAfRGT~t~~eWi~Dl~~~lv~~~~---~-----------------------~g~---------~~~~~kVH~GF~ 189 (413)
T PLN02571 145 RDIVIAWRGTVQTLEWVNDFEFNLVSASK---I-----------------------FGE---------SNDQPKVHQGWY 189 (413)
T ss_pred ceEEEEEcCCCCHHHHHHhcccceecccc---c-----------------------cCC---------CCCCceeeehHH
Confidence 46999999999999999999987654310 0 000 023689999999
Q ss_pred HHHh-----------cChhHHHH----HHHhcCCC--eEEEeccChhHHHHHHHHHHHHHH-HhhhcccccCCCcceEEE
Q 001709 213 ARAK-----------GIPALELY----RLAQKKKR--KLVLCGHSLGGAVAALATLAILRV-VAASSSLKENDKVQVKCI 274 (1022)
Q Consensus 213 ~a~~-----------~I~~~~l~----~l~~~p~y--kLVvTGHSLGGALAtLAAl~LLr~-~~~~~~~~~~~~~~V~vy 274 (1022)
..|. +++.+++. .+.+||++ +|+|||||||||||+|+|+++... +... +.......+|.+|
T Consensus 190 ~~Yts~~~~~~~~k~Sar~qvl~eV~~L~~~y~~e~~sI~VTGHSLGGALAtLaA~dl~~~g~n~~-~~~~~~~~~V~v~ 268 (413)
T PLN02571 190 SIYTSDDERSPFNKTSARDQVLNEVGRLVEKYKDEEISITICGHSLGAALATLNAVDIVANGFNRS-KSRPNKSCPVTAF 268 (413)
T ss_pred HhhhccccccccchhhHHHHHHHHHHHHHHhcCcccccEEEeccchHHHHHHHHHHHHHHhccccc-ccccccCcceEEE
Confidence 9996 33333332 25667764 799999999999999999998542 1000 0011123458999
Q ss_pred EeCCCccccHHHHHHHHhcCCCceeEEEeeCCCcccccCCCCccccCCCceeeecC
Q 001709 275 TFSQPPVGNAALRDYVNRKGWQHYFKSYCIPEDLVPRILSPAYFHHYNNVQPLLVS 330 (1022)
Q Consensus 275 TFGqPRVGN~aFA~~v~~~~~~~~f~RVVh~~DiVPrLP~~~~f~H~~~Evw~~~~ 330 (1022)
|||+|||||.+|++++++.... .++||+|.+|+||++|+ .+|+|.++|+|++..
T Consensus 269 TFGsPRVGN~~Fa~~~~~~~~~-~~~RVvN~~DiVP~lP~-~gY~HvG~El~id~~ 322 (413)
T PLN02571 269 VFASPRVGDSDFKKLFSGLKDL-RVLRVRNLPDVIPNYPL-IGYSDVGEELPIDTR 322 (413)
T ss_pred EeCCCCccCHHHHHHHhcccCc-cEEEEEeCCCCCCcCCC-CCCEecceEEEEeCC
Confidence 9999999999999999986333 34599999999999995 689999999999754
No 27
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.97 E-value=1.4e-30 Score=292.35 Aligned_cols=199 Identities=22% Similarity=0.226 Sum_probs=155.7
Q ss_pred CeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCc--eEEEEccccc--hhhhcCceEEEcCCCCCCcc
Q 001709 711 FTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTIN--SGNLDAEADD--QEGIAGGLCYCDSAGVNLQE 783 (1022)
Q Consensus 711 ~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~Pts--G~I~idg~~~--~~~lr~~IGyV~Q~~~~~~~ 783 (1022)
...+|+||||+|+ +++|+||||||||||||+|+|++ +|++ |+|.++|.++ ....++.||||||+..+|++
T Consensus 17 ~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~---~p~~~~G~i~~~g~~~~~~~~~~r~ig~vfQ~~~l~p~ 93 (362)
T TIGR03258 17 ANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFV---KAAGLTGRIAIADRDLTHAPPHKRGLALLFQNYALFPH 93 (362)
T ss_pred CeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCC---CCCCCCEEEEECCEECCCCCHHHCCEEEEECCcccCCC
Confidence 4679999999998 99999999999999999999999 9999 9999998765 22246789999996556999
Q ss_pred ccccccchHHHHhccccc-------hHHHHHHHH-HhcCCccccCCCcCCch-HHHHHHHHH---------hhhccccCC
Q 001709 784 LTMEAARFKDEMWMGIRD-------LSRKTDLIV-LVHNLSHKIPRYNYSSA-SGQQQPALS---------LLLNEAKSL 845 (1022)
Q Consensus 784 lTV~~~~~~ENI~~g~~~-------~~~~v~~~L-~v~gL~~~~~r~~~~LS-GqrQRvaIA---------LLLDEPTSa 845 (1022)
+|| +|||.|+... ..+++++++ .+ ||.++.++++.+|| ||||||+|| |||||||++
T Consensus 94 ~tv-----~enl~~~l~~~~~~~~~~~~~v~~~l~~~-gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~llLLDEP~s~ 167 (362)
T TIGR03258 94 LKV-----EDNVAFGLRAQKMPKADIAERVADALKLV-GLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSA 167 (362)
T ss_pred CcH-----HHHHHHHHHHcCCCHHHHHHHHHHHHHhc-CCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCcccc
Confidence 999 9999987641 345788888 87 99999999999999 999999999 999999997
Q ss_pred ChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhC-CCeEEEEecCCcccccCcccccccCCCCC----CCCCCCCCceeee
Q 001709 846 GIPWVLAITNKFSVSAHQQRAAIDAVMQAYQAS-PSTTEVINSCPYVMPGAVSASLSWGASGG----DSDGRSGAQKLLH 920 (1022)
Q Consensus 846 d~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t-~~~~vVv~~~~~V~~~~~~a~~l~~~~~~----~~~~~~~~~~i~~ 920 (1022)
+|...+..+...+.+..++. .-++++++ |+.+++..+++++.+ .+.+.+++..++.
T Consensus 168 -------------LD~~~r~~l~~~l~~l~~~~~g~til~vT------Hd~~ea~~l~dri~vl~~G~i~~~g~~~~~~~ 228 (362)
T TIGR03258 168 -------------LDANIRANMREEIAALHEELPELTILCVT------HDQDDALTLADKAGIMKDGRLAAHGEPQALYD 228 (362)
T ss_pred -------------CCHHHHHHHHHHHHHHHHhCCCCEEEEEe------CCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 78888888877776554443 33555555 666666666666543 2333566666777
Q ss_pred cccccccCCCCCCCCcc
Q 001709 921 APINLVWRPFQRKDNIL 937 (1022)
Q Consensus 921 ~pi~l~~~pf~~~~~~~ 937 (1022)
.|.+.+.+.|.+..++.
T Consensus 229 ~p~~~~~a~~~g~~~~~ 245 (362)
T TIGR03258 229 APADGFAAEFLGAANIL 245 (362)
T ss_pred CcCcHHHHHhhCccccc
Confidence 77666656666654443
No 28
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.96 E-value=4.7e-30 Score=273.21 Aligned_cols=179 Identities=17% Similarity=0.211 Sum_probs=147.7
Q ss_pred ceeEEEEecCCCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc-----hhhhcCce
Q 001709 700 LSDVFIFCTSDFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD-----QEGIAGGL 771 (1022)
Q Consensus 700 l~~~~~~~~~~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~-----~~~lr~~I 771 (1022)
++++++.|..+ ..+|++|||+|+ +++|+|+||||||||+++|+|++ +|++|.|.+++.+. ...+++.+
T Consensus 6 ~~~l~~~y~~~-~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl---~p~~G~v~~~g~~~~~~~~~~~~~~~v 81 (235)
T COG1122 6 AENLSFRYPGR-KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLL---KPTSGEVLVDGLDTSSEKSLLELRQKV 81 (235)
T ss_pred EEEEEEEcCCC-ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcC---cCCCCEEEECCeeccchhhHHHhhcce
Confidence 45555555444 789999999999 99999999999999999999999 99999999998652 56789999
Q ss_pred EEEcCCCCC-CccccccccchHHHHhccccc-------hHHHHHHHH-HhcCCccccCCCcCCch-HHHHHHHHH-----
Q 001709 772 CYCDSAGVN-LQELTMEAARFKDEMWMGIRD-------LSRKTDLIV-LVHNLSHKIPRYNYSSA-SGQQQPALS----- 836 (1022)
Q Consensus 772 GyV~Q~~~~-~~~lTV~~~~~~ENI~~g~~~-------~~~~v~~~L-~v~gL~~~~~r~~~~LS-GqrQRvaIA----- 836 (1022)
|||||++.. |..-|| .|+|+||..+ .++++++++ .+ |+.++.++.|.+|| |||||||||
T Consensus 82 G~VfQnpd~q~~~~tV-----~~evafg~~n~g~~~~e~~~rv~~~l~~v-gl~~~~~r~p~~LSGGqkqRvaIA~vLa~ 155 (235)
T COG1122 82 GLVFQNPDDQLFGPTV-----EDEVAFGLENLGLPREEIEERVAEALELV-GLEELLDRPPFNLSGGQKQRVAIAGVLAM 155 (235)
T ss_pred EEEEECcccccccCcH-----HHHHhhchhhcCCCHHHHHHHHHHHHHHc-CchhhccCCccccCCcceeeHHhhHHHHc
Confidence 999997666 788899 9999999873 467899999 88 99999999999999 999999999
Q ss_pred ----hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCCcccccCcccccccCCCCC
Q 001709 837 ----LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCPYVMPGAVSASLSWGASGG 907 (1022)
Q Consensus 837 ----LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~~V~~~~~~a~~l~~~~~~ 907 (1022)
||||||||+ +|...+..++..+.+..+..+.++++++ |+.+.+...++++.+
T Consensus 156 ~P~iliLDEPta~-------------LD~~~~~~l~~~l~~L~~~~~~tii~~t------Hd~~~~~~~ad~v~v 211 (235)
T COG1122 156 GPEILLLDEPTAG-------------LDPKGRRELLELLKKLKEEGGKTIIIVT------HDLELVLEYADRVVV 211 (235)
T ss_pred CCCEEEEcCCCCC-------------CCHHHHHHHHHHHHHHHhcCCCeEEEEe------CcHHHHHhhCCEEEE
Confidence 999999997 7777777777666554444455677775 666666666666654
No 29
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.96 E-value=6.1e-30 Score=286.26 Aligned_cols=199 Identities=20% Similarity=0.201 Sum_probs=153.9
Q ss_pred CeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc--hhhhcCceEEEcCCCCCCcccc
Q 001709 711 FTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD--QEGIAGGLCYCDSAGVNLQELT 785 (1022)
Q Consensus 711 ~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~--~~~lr~~IGyV~Q~~~~~~~lT 785 (1022)
..++|+||||+|+ +++|+||||||||||||+|+|++ +|++|+|+++|.++ ....++.||||||+..+|+++|
T Consensus 14 ~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~---~p~~G~I~i~g~~i~~~~~~~r~i~~v~Q~~~l~p~~t 90 (353)
T PRK10851 14 RTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLE---HQTSGHIRFHGTDVSRLHARDRKVGFVFQHYALFRHMT 90 (353)
T ss_pred CeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC---CCCCcEEEECCEECCCCCHHHCCEEEEecCcccCCCCc
Confidence 4679999999998 99999999999999999999999 99999999998765 2234578999999655589999
Q ss_pred ccccchHHHHhcccc--------c---hHHHHHHHH-HhcCCccccCCCcCCch-HHHHHHHHH---------hhhcccc
Q 001709 786 MEAARFKDEMWMGIR--------D---LSRKTDLIV-LVHNLSHKIPRYNYSSA-SGQQQPALS---------LLLNEAK 843 (1022)
Q Consensus 786 V~~~~~~ENI~~g~~--------~---~~~~v~~~L-~v~gL~~~~~r~~~~LS-GqrQRvaIA---------LLLDEPT 843 (1022)
| +|||.|+.. . ..+++++++ .+ +|.++.++++.+|| ||||||+|| |||||||
T Consensus 91 v-----~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~L~~~~~~~~~~LSgGq~QRvalArAL~~~P~llLLDEP~ 164 (353)
T PRK10851 91 V-----FDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMV-QLAHLADRYPAQLSGGQKQRVALARALAVEPQILLLDEPF 164 (353)
T ss_pred H-----HHHHHhhhhhcccccCCCHHHHHHHHHHHHHHc-CCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 9 999998742 1 245778888 77 99999999999999 999999999 9999999
Q ss_pred CCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCCcccccCcccccccCCCCCCC----CCCCCCceee
Q 001709 844 SLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCPYVMPGAVSASLSWGASGGDS----DGRSGAQKLL 919 (1022)
Q Consensus 844 Sad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~~V~~~~~~a~~l~~~~~~~~----~~~~~~~~i~ 919 (1022)
++ +|...+..+...+.+..++...++++++ |+.+++..+++++.... .+.+++..++
T Consensus 165 s~-------------LD~~~r~~l~~~L~~l~~~~g~tii~vT------Hd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~ 225 (353)
T PRK10851 165 GA-------------LDAQVRKELRRWLRQLHEELKFTSVFVT------HDQEEAMEVADRVVVMSQGNIEQAGTPDQVW 225 (353)
T ss_pred cc-------------CCHHHHHHHHHHHHHHHHhcCCEEEEEe------CCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 97 7888888877766655444345666665 66666666666664322 2244555566
Q ss_pred ecccccccCCCCCCCCcc
Q 001709 920 HAPINLVWRPFQRKDNIL 937 (1022)
Q Consensus 920 ~~pi~l~~~pf~~~~~~~ 937 (1022)
..|.+.+...|.+..++.
T Consensus 226 ~~p~~~~~~~~~g~~~~~ 243 (353)
T PRK10851 226 REPATRFVLEFMGEVNRL 243 (353)
T ss_pred hCccchHHHHhcCcceee
Confidence 666665555555544443
No 30
>PLN02719 triacylglycerol lipase
Probab=99.96 E-value=6.3e-29 Score=284.83 Aligned_cols=159 Identities=19% Similarity=0.262 Sum_probs=117.1
Q ss_pred eEEEEEcCCCCchhhhhhccccccccccccchhhhhhhccccchhhhhccCCCCCCCCCCCCCcccCCCCCCcccHhHHH
Q 001709 134 TLFASFIGTKQYKDVMTDANILQGAIFHEDAIEDMEGIELGESKQAKEQKGNGENRWNPLEKPRQLKDKPKPAAHRGFLA 213 (1022)
Q Consensus 134 ~IVVAFRGT~s~~DwitDl~~~q~~~f~~~~l~~~~~~~a~~~~~~~~q~g~~~~~g~~~~~~k~~~~~~~~~VH~GFl~ 213 (1022)
.||||||||.+..||++|+++...+....... ++ .+.|+||+||++
T Consensus 214 dIVVAfRGT~t~~eWi~DL~~~l~p~~~~~~~---------------------------------c~-~~~~kVH~GFls 259 (518)
T PLN02719 214 DIAIAWRGTVTRLEWIADLKDFLKPVSGNGFR---------------------------------CP-DPAVKAESGFLD 259 (518)
T ss_pred eEEEEEcCCCCchhhhhhccccceeccccccC---------------------------------CC-CCCceeehhHHH
Confidence 59999999999999999999855432110000 00 136899999999
Q ss_pred HHhc-----------ChhHHHH----HHHhcCC-----CeEEEeccChhHHHHHHHHHHHHHHHhhhcccccCCCcceEE
Q 001709 214 RAKG-----------IPALELY----RLAQKKK-----RKLVLCGHSLGGAVAALATLAILRVVAASSSLKENDKVQVKC 273 (1022)
Q Consensus 214 a~~~-----------I~~~~l~----~l~~~p~-----ykLVvTGHSLGGALAtLAAl~LLr~~~~~~~~~~~~~~~V~v 273 (1022)
.|.+ ++.+++. .+.+||+ ++|+|||||||||||+|+|+++....- +. .......+|.+
T Consensus 260 ~Yts~~~~s~~~k~SaReQVl~eV~rL~~~Ypd~~ge~~sItVTGHSLGGALAtLaA~Dl~~~gl-n~-~~~~~~~pVtv 337 (518)
T PLN02719 260 LYTDKDTCCNFSKFSAREQVLTEVKRLVERYGDEEGEELSITVTGHSLGGALAVLSAYDVAEMGL-NR-TRKGKVIPVTA 337 (518)
T ss_pred HHhcccccccccchhHHHHHHHHHHHHHHHCCcccCCcceEEEecCcHHHHHHHHHHHHHHHhcc-cc-cccccccceEE
Confidence 9973 3444332 2456765 799999999999999999999865310 00 00112345899
Q ss_pred EEeCCCccccHHHHHHHHhcCCCceeEEEeeCCCcccccCCC------------------CccccCCCceeeecC
Q 001709 274 ITFSQPPVGNAALRDYVNRKGWQHYFKSYCIPEDLVPRILSP------------------AYFHHYNNVQPLLVS 330 (1022)
Q Consensus 274 yTFGqPRVGN~aFA~~v~~~~~~~~f~RVVh~~DiVPrLP~~------------------~~f~H~~~Evw~~~~ 330 (1022)
||||+|||||.+||+++++.+ ..++||||.+|+||++|+. ..|.|.|.|.+++..
T Consensus 338 yTFGsPRVGN~~Fa~~~~~~~--~~~lRVvN~~D~VP~lP~~~~~~~~~~~l~~~~~~~~~~Y~hVG~eL~ld~~ 410 (518)
T PLN02719 338 FTYGGPRVGNIRFKERIEELG--VKVLRVVNEHDVVAKSPGLFLNERAPQALMKLAGGLPWCYSHVGEMLPLDHQ 410 (518)
T ss_pred EEecCCCccCHHHHHHHHhcC--CcEEEEEeCCCCcccCCchhccccccchhhhcccCCccceeeeeEEEEEcCC
Confidence 999999999999999999863 3456999999999999962 248999999998644
No 31
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.96 E-value=3.1e-29 Score=264.77 Aligned_cols=180 Identities=19% Similarity=0.158 Sum_probs=137.1
Q ss_pred CcccccCceeEEEEecCCCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc------
Q 001709 693 KFIRPEGLSDVFIFCTSDFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD------ 763 (1022)
Q Consensus 693 ~~i~~~~l~~~~~~~~~~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~------ 763 (1022)
..|+++++.+. .+.+.+++||||+|+ +++|+||||||||||||+|.|++ +|++|+|+++|.++
T Consensus 7 ~~I~vr~v~~~-----fG~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll---~P~~GeI~i~G~~i~~ls~~ 78 (263)
T COG1127 7 PLIEVRGVTKS-----FGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLL---RPDKGEILIDGEDIPQLSEE 78 (263)
T ss_pred ceEEEeeeeee-----cCCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccC---CCCCCeEEEcCcchhccCHH
Confidence 34665555542 267899999999999 99999999999999999999999 99999999998765
Q ss_pred -hhhhcCceEEEcCCCCCCccccccccchHHHHhccccc--------hHHHHHHHH-HhcCCccc-cCCCcCCch-HHHH
Q 001709 764 -QEGIAGGLCYCDSAGVNLQELTMEAARFKDEMWMGIRD--------LSRKTDLIV-LVHNLSHK-IPRYNYSSA-SGQQ 831 (1022)
Q Consensus 764 -~~~lr~~IGyV~Q~~~~~~~lTV~~~~~~ENI~~g~~~--------~~~~v~~~L-~v~gL~~~-~~r~~~~LS-GqrQ 831 (1022)
...+|+++|++||..++|..+|| +||++|..++ .++.+..-| .| ||... .+.+|++|| ||++
T Consensus 79 ~~~~ir~r~GvlFQ~gALFssltV-----~eNVafplre~~~lp~~~i~~lv~~KL~~V-GL~~~~~~~~PsELSGGM~K 152 (263)
T COG1127 79 ELYEIRKRMGVLFQQGALFSSLTV-----FENVAFPLREHTKLPESLIRELVLMKLELV-GLRGAAADLYPSELSGGMRK 152 (263)
T ss_pred HHHHHHhheeEEeeccccccccch-----hHhhheehHhhccCCHHHHHHHHHHHHHhc-CCChhhhhhCchhhcchHHH
Confidence 23578999999997777999999 9999998773 344455556 77 99877 999999999 9999
Q ss_pred HHHHH---------hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCCcccccCccccccc
Q 001709 832 QPALS---------LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCPYVMPGAVSASLSW 902 (1022)
Q Consensus 832 RvaIA---------LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~~V~~~~~~a~~l~ 902 (1022)
|+||| |++||||++.+| ..-..+...+.+.-.+.+-|+++|+ |+.+++.-.+
T Consensus 153 RvaLARAialdPell~~DEPtsGLDP-------------I~a~~~~~LI~~L~~~lg~T~i~VT------HDl~s~~~i~ 213 (263)
T COG1127 153 RVALARAIALDPELLFLDEPTSGLDP-------------ISAGVIDELIRELNDALGLTVIMVT------HDLDSLLTIA 213 (263)
T ss_pred HHHHHHHHhcCCCEEEecCCCCCCCc-------------chHHHHHHHHHHHHHhhCCEEEEEE------CChHHHHhhh
Confidence 99999 999999998444 3333333333333333345666665 4444444444
Q ss_pred CCC
Q 001709 903 GAS 905 (1022)
Q Consensus 903 ~~~ 905 (1022)
|++
T Consensus 214 Drv 216 (263)
T COG1127 214 DRV 216 (263)
T ss_pred ceE
Confidence 443
No 32
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.96 E-value=1.1e-29 Score=264.20 Aligned_cols=180 Identities=14% Similarity=0.203 Sum_probs=132.9
Q ss_pred ccccCceeEEEEecCCCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCC--CceEEEEccccc------
Q 001709 695 IRPEGLSDVFIFCTSDFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRT--INSGNLDAEADD------ 763 (1022)
Q Consensus 695 i~~~~l~~~~~~~~~~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~P--tsG~I~idg~~~------ 763 (1022)
+.+++|+ ++| +.+.||+||||+|+ ++|||||||||||||||+++++.++.+- .+|+|.++|.++
T Consensus 8 ~~~~~l~---~yY--g~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d 82 (253)
T COG1117 8 IEVRDLN---LYY--GDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVD 82 (253)
T ss_pred eEeccee---EEE--CchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCC
Confidence 4444444 555 46789999999999 9999999999999999999999833221 259999998664
Q ss_pred hhhhcCceEEEcCCCCC-CccccccccchHHHHhccccc-------hHHHHHHHH-H---hcCCccccCCCcCCch-HHH
Q 001709 764 QEGIAGGLCYCDSAGVN-LQELTMEAARFKDEMWMGIRD-------LSRKTDLIV-L---VHNLSHKIPRYNYSSA-SGQ 830 (1022)
Q Consensus 764 ~~~lr~~IGyV~Q~~~~-~~~lTV~~~~~~ENI~~g~~~-------~~~~v~~~L-~---v~gL~~~~~r~~~~LS-Gqr 830 (1022)
...+|++|||||| .++ || +|+ +|||+||.+- .++.++..| . .+...+.+++.+..|| |||
T Consensus 83 ~~~lRr~vGMVFQ-kPnPFp-~SI-----ydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQ 155 (253)
T COG1117 83 VVELRRRVGMVFQ-KPNPFP-MSI-----YDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQ 155 (253)
T ss_pred HHHHHHHheeecc-CCCCCC-chH-----HHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHH
Confidence 4578999999999 666 88 999 9999999871 334555555 3 3234678889999999 999
Q ss_pred HHHHHH---------hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCCcccccCcccccc
Q 001709 831 QQPALS---------LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCPYVMPGAVSASLS 901 (1022)
Q Consensus 831 QRvaIA---------LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~~V~~~~~~a~~l 901 (1022)
||++|| |||||||||.+| ..-.. ++.++.++++ .-|++||+ |....|...
T Consensus 156 QRLcIARalAv~PeVlLmDEPtSALDP-------------IsT~k-IEeLi~eLk~-~yTIviVT------HnmqQAaRv 214 (253)
T COG1117 156 QRLCIARALAVKPEVLLMDEPTSALDP-------------ISTLK-IEELITELKK-KYTIVIVT------HNMQQAARV 214 (253)
T ss_pred HHHHHHHHHhcCCcEEEecCcccccCc-------------hhHHH-HHHHHHHHHh-ccEEEEEe------CCHHHHHHH
Confidence 999999 999999998544 22111 2333344442 34677776 666666666
Q ss_pred cCCCCC
Q 001709 902 WGASGG 907 (1022)
Q Consensus 902 ~~~~~~ 907 (1022)
+|.+.-
T Consensus 215 SD~taF 220 (253)
T COG1117 215 SDYTAF 220 (253)
T ss_pred hHhhhh
Confidence 666553
No 33
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.96 E-value=1.6e-29 Score=283.90 Aligned_cols=170 Identities=15% Similarity=0.060 Sum_probs=141.2
Q ss_pred CCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc----hhhh----cCceEEEcCCC
Q 001709 710 DFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD----QEGI----AGGLCYCDSAG 778 (1022)
Q Consensus 710 ~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~----~~~l----r~~IGyV~Q~~ 778 (1022)
+.+.+|+||||+|+ +++|+||||||||||||+|+|++ +|++|+|+++|.++ ...+ ++.||||||+.
T Consensus 4 ~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~---~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~ 80 (363)
T TIGR01186 4 GGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLI---EPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQF 80 (363)
T ss_pred CCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCC---CCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCC
Confidence 45679999999999 99999999999999999999999 99999999998665 2333 67899999965
Q ss_pred CCCccccccccchHHHHhccccc-------hHHHHHHHH-HhcCCccccCCCcCCch-HHHHHHHHH---------hhhc
Q 001709 779 VNLQELTMEAARFKDEMWMGIRD-------LSRKTDLIV-LVHNLSHKIPRYNYSSA-SGQQQPALS---------LLLN 840 (1022)
Q Consensus 779 ~~~~~lTV~~~~~~ENI~~g~~~-------~~~~v~~~L-~v~gL~~~~~r~~~~LS-GqrQRvaIA---------LLLD 840 (1022)
.+|+++|| +|||.|+... ..+++.+++ .+ ||.++.++++.+|| ||||||+|| ||||
T Consensus 81 ~l~~~~TV-----~eNi~~~~~~~~~~~~~~~~~~~~~l~~v-gL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlD 154 (363)
T TIGR01186 81 ALFPHMTI-----LQNTSLGPELLGWPEQERKEKALELLKLV-GLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMD 154 (363)
T ss_pred cCCCCCCH-----HHHHHHHHHHcCCCHHHHHHHHHHHHHhc-CCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 55899999 9999987541 346688888 87 99999999999999 999999999 9999
Q ss_pred cccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCCcccccCcccccccCCCCC
Q 001709 841 EAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCPYVMPGAVSASLSWGASGG 907 (1022)
Q Consensus 841 EPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~~V~~~~~~a~~l~~~~~~ 907 (1022)
|||++ +|+..+..+...+.+..+....++++++ |+.+++..+++++..
T Consensus 155 EP~sa-------------LD~~~r~~l~~~l~~l~~~~~~Tii~vT------Hd~~ea~~~~drI~v 202 (363)
T TIGR01186 155 EAFSA-------------LDPLIRDSMQDELKKLQATLQKTIVFIT------HDLDEAIRIGDRIVI 202 (363)
T ss_pred CCccc-------------CCHHHHHHHHHHHHHHHHhcCCEEEEEe------CCHHHHHHhCCEEEE
Confidence 99997 7888888888877665444455666665 666666666666543
No 34
>PLN02753 triacylglycerol lipase
Probab=99.96 E-value=2.9e-29 Score=288.24 Aligned_cols=160 Identities=20% Similarity=0.262 Sum_probs=118.0
Q ss_pred CeEEEEEcCCCCchhhhhhccccccccccccchhhhhhhccccchhhhhccCCCCCCCCCCCCCcccCCCCCCcccHhHH
Q 001709 133 DTLFASFIGTKQYKDVMTDANILQGAIFHEDAIEDMEGIELGESKQAKEQKGNGENRWNPLEKPRQLKDKPKPAAHRGFL 212 (1022)
Q Consensus 133 ~~IVVAFRGT~s~~DwitDl~~~q~~~f~~~~l~~~~~~~a~~~~~~~~q~g~~~~~g~~~~~~k~~~~~~~~~VH~GFl 212 (1022)
+.||||||||.+..||++|+++.+.++-... . ... ...|+||+||+
T Consensus 227 RdIVVAfRGT~s~~DWl~DL~~~l~p~~~~~-------------------------~--------~~~-~~~~kVH~GFl 272 (531)
T PLN02753 227 RDIAIAWRGTVTKLEWIADLKDYLKPVSENK-------------------------I--------RCP-DPAVKVESGFL 272 (531)
T ss_pred ceEEEEECCCCCHHHHHHHhhccccccCccc-------------------------C--------CCC-CCCcchhHhHH
Confidence 4799999999999999999998654421000 0 000 13689999999
Q ss_pred HHHhc-----------ChhHHHH----HHHhcC-----CCeEEEeccChhHHHHHHHHHHHHHHHhhhcccccCCCcceE
Q 001709 213 ARAKG-----------IPALELY----RLAQKK-----KRKLVLCGHSLGGAVAALATLAILRVVAASSSLKENDKVQVK 272 (1022)
Q Consensus 213 ~a~~~-----------I~~~~l~----~l~~~p-----~ykLVvTGHSLGGALAtLAAl~LLr~~~~~~~~~~~~~~~V~ 272 (1022)
..|.. ++.+++. .+.+|+ +|+|+|||||||||||+|+|+++..... +. .......+|.
T Consensus 273 ~lYts~d~~s~~~k~S~reQVl~eVkrLl~~Y~~e~~~~~sItVTGHSLGGALAtLaA~Dla~~g~-n~-~~~~~~~pV~ 350 (531)
T PLN02753 273 DLYTDKDTTCKFAKFSAREQILTEVKRLVEEHGDDDDSDLSITVTGHSLGGALAILSAYDIAEMGL-NR-SKKGKVIPVT 350 (531)
T ss_pred HHHhccCcccccchhhHHHHHHHHHHHHHHHcccccCCCceEEEEccCHHHHHHHHHHHHHHHhcc-cc-cccCccCceE
Confidence 99973 3444332 245564 6999999999999999999999864210 00 0111234689
Q ss_pred EEEeCCCccccHHHHHHHHhcCCCceeEEEeeCCCcccccCCC------------------CccccCCCceeeecC
Q 001709 273 CITFSQPPVGNAALRDYVNRKGWQHYFKSYCIPEDLVPRILSP------------------AYFHHYNNVQPLLVS 330 (1022)
Q Consensus 273 vyTFGqPRVGN~aFA~~v~~~~~~~~f~RVVh~~DiVPrLP~~------------------~~f~H~~~Evw~~~~ 330 (1022)
|||||+|||||.+||+++++.+ ..++||||.+|+||++|+. ..|.|.|.|.|++..
T Consensus 351 vyTFGsPRVGN~aFA~~~~~l~--~~~lRVVN~~DiVP~lP~~~~~~~~~~~l~~~~~~~~~~Y~hVG~EL~lD~~ 424 (531)
T PLN02753 351 VLTYGGPRVGNVRFKDRMEELG--VKVLRVVNVHDVVPKSPGLFLNESRPHALMKIAEGLPWCYSHVGEELALDHQ 424 (531)
T ss_pred EEEeCCCCccCHHHHHHHHhcC--CCEEEEEeCCCCcccCCchhccccccchhhhhccCCccceeeeeeEEeeCCC
Confidence 9999999999999999999863 3455999999999999952 248999999999754
No 35
>KOG4569 consensus Predicted lipase [Lipid transport and metabolism]
Probab=99.96 E-value=4.5e-29 Score=277.79 Aligned_cols=178 Identities=17% Similarity=0.173 Sum_probs=141.8
Q ss_pred cccCCeEEEEEcCCCCchhhhhhccccccccccccchhhhhhhccccchhhhhccCCCCCCCCCCCCCcccCCCCCCccc
Q 001709 129 AEAGDTLFASFIGTKQYKDVMTDANILQGAIFHEDAIEDMEGIELGESKQAKEQKGNGENRWNPLEKPRQLKDKPKPAAH 208 (1022)
Q Consensus 129 ae~~~~IVVAFRGT~s~~DwitDl~~~q~~~f~~~~l~~~~~~~a~~~~~~~~q~g~~~~~g~~~~~~k~~~~~~~~~VH 208 (1022)
+++.+.||||||||.+..+|++|+....... .. .+ ...++|+
T Consensus 101 ~~d~~~IvvafRGt~~~~q~~~e~~~~~~~~---~~------------------------~~-----------~~~g~v~ 142 (336)
T KOG4569|consen 101 SDDRKAIVVAFRGTNTPLQWIAEFDKSLFPS---KP------------------------FF-----------PDGGKVE 142 (336)
T ss_pred ecCCcEEEEEEccCCChHHHHHHHHhhhccc---cc------------------------cc-----------cCCceEE
Confidence 4456899999999999999999987654221 00 00 1366899
Q ss_pred HhHHHHHhcChhHH-----HHHHHhcCCCeEEEeccChhHHHHHHHHHHHHHHHhhhcccccCCCcceEEEEeCCCcccc
Q 001709 209 RGFLARAKGIPALE-----LYRLAQKKKRKLVLCGHSLGGAVAALATLAILRVVAASSSLKENDKVQVKCITFSQPPVGN 283 (1022)
Q Consensus 209 ~GFl~a~~~I~~~~-----l~~l~~~p~ykLVvTGHSLGGALAtLAAl~LLr~~~~~~~~~~~~~~~V~vyTFGqPRVGN 283 (1022)
.||+++|..+.... ...+..||+|+|++||||||||+|+|||.++... ......++++||||||||||
T Consensus 143 ~~f~~~~~~~~~~~~~~~~~~L~~~~~~~~i~vTGHSLGgAlA~laa~~i~~~-------~~~~~~~v~v~tFG~PRvGn 215 (336)
T KOG4569|consen 143 AYFLDAYTSLWNSGLDAELRRLIELYPNYSIWVTGHSLGGALASLAALDLVKN-------GLKTSSPVKVYTFGQPRVGN 215 (336)
T ss_pred EeccchhccccHHHHHHHHHHHHHhcCCcEEEEecCChHHHHHHHHHHHHHHc-------CCCCCCceEEEEecCCCccc
Confidence 99999999876421 2236789999999999999999999999988652 22234679999999999999
Q ss_pred HHHHHHHHhcCCCceeEEEeeCCCcccccCCC------CccccCCCcee-eecCCccccccccccccccccccccccCC
Q 001709 284 AALRDYVNRKGWQHYFKSYCIPEDLVPRILSP------AYFHHYNNVQP-LLVSAEIRTNGSFVSKHEEGVEKSRAEKP 355 (1022)
Q Consensus 284 ~aFA~~v~~~~~~~~f~RVVh~~DiVPrLP~~------~~f~H~~~Evw-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (1022)
.+||+++++++. +.+||||.+|+|||+|+. ..|+|+.+|+| |+..++..+.+.+|.+.+.+. .-|-++
T Consensus 216 ~~fa~~~d~~~~--~s~Rvv~~~DiVP~lP~~~~~~g~~~~~h~~~ei~~~~~~~~~~~~~~~c~~~~~~~--~~cs~~ 290 (336)
T KOG4569|consen 216 LAFAEWHDELVP--YSFRVVHRRDIVPHLPGIVSHVGTELYYHHRTEVWLYNNNMNLEDPYHICDGADGED--PLCSDR 290 (336)
T ss_pred HHHHHHHHhhCC--cEEEEEcCCCCCCCCCCccccCCcccccccCcceeccccccCcccceehhccCCCCC--cccccc
Confidence 999999999973 445999999999999974 23777777999 999999999999999877775 444444
No 36
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.96 E-value=3.2e-29 Score=255.63 Aligned_cols=175 Identities=19% Similarity=0.159 Sum_probs=138.8
Q ss_pred ceeEEEEecCCCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc--hhhhcCceEEE
Q 001709 700 LSDVFIFCTSDFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD--QEGIAGGLCYC 774 (1022)
Q Consensus 700 l~~~~~~~~~~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~--~~~lr~~IGyV 774 (1022)
|+++.+.|. .. ==.++++|+ +|||+|||||||||||++|+||+ .|.+|+|+|+|.+. ..-..|-++|+
T Consensus 4 L~~V~~~y~--~~--~~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~---~P~~G~i~i~g~d~t~~~P~~RPVSml 76 (231)
T COG3840 4 LDDVRFSYG--HL--PMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFE---TPASGEILINGVDHTASPPAERPVSML 76 (231)
T ss_pred ccceEEeeC--cc--eEEEEEeecCCcEEEEECCCCccHHHHHHHHHhcc---CCCCceEEEcCeecCcCCcccCChhhh
Confidence 555555442 11 223555665 99999999999999999999999 99999999999886 33346779999
Q ss_pred cCCCCCCccccccccchHHHHhccccc-------hHHHHHHHH-HhcCCccccCCCcCCch-HHHHHHHHH---------
Q 001709 775 DSAGVNLQELTMEAARFKDEMWMGIRD-------LSRKTDLIV-LVHNLSHKIPRYNYSSA-SGQQQPALS--------- 836 (1022)
Q Consensus 775 ~Q~~~~~~~lTV~~~~~~ENI~~g~~~-------~~~~v~~~L-~v~gL~~~~~r~~~~LS-GqrQRvaIA--------- 836 (1022)
||+..+|.++|| .+||.+|... .+++++.++ .+ ||.++.+|.|.+|| |||||||||
T Consensus 77 FQEnNLFaHLtV-----~qNigLGl~P~LkL~a~~r~~v~~aa~~v-Gl~~~~~RLP~~LSGGqRQRvALARclvR~~Pi 150 (231)
T COG3840 77 FQENNLFAHLTV-----AQNIGLGLSPGLKLNAEQREKVEAAAAQV-GLAGFLKRLPGELSGGQRQRVALARCLVREQPI 150 (231)
T ss_pred hhccccchhhhh-----hhhhcccCCcccccCHHHHHHHHHHHHHh-ChhhHhhhCccccCchHHHHHHHHHHHhccCCe
Confidence 994444999999 9999999873 567888899 99 99999999999999 999999999
Q ss_pred hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCCcccccCcccccccCCCC
Q 001709 837 LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCPYVMPGAVSASLSWGASG 906 (1022)
Q Consensus 837 LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~~V~~~~~~a~~l~~~~~ 906 (1022)
||||||||+ +|+.-|.++...+.+.-.++..|+++|+ |..+++.-+++++.
T Consensus 151 lLLDEPFsA-------------LdP~LR~eMl~Lv~~l~~E~~~TllmVT------H~~~Da~~ia~~~~ 201 (231)
T COG3840 151 LLLDEPFSA-------------LDPALRAEMLALVSQLCDERKMTLLMVT------HHPEDAARIADRVV 201 (231)
T ss_pred EEecCchhh-------------cCHHHHHHHHHHHHHHHHhhCCEEEEEe------CCHHHHHHhhhceE
Confidence 999999997 6666677777777777777766777775 44444444444443
No 37
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.96 E-value=3.7e-29 Score=281.29 Aligned_cols=197 Identities=17% Similarity=0.182 Sum_probs=144.4
Q ss_pred CeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc--hhhhcCceEEEcCCCCCCcccc
Q 001709 711 FTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD--QEGIAGGLCYCDSAGVNLQELT 785 (1022)
Q Consensus 711 ~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~--~~~lr~~IGyV~Q~~~~~~~lT 785 (1022)
.+++|+||||+|+ +++|+||||||||||||+|+|++ +|++|+|.+++.++ ....++.||||||+...|+++|
T Consensus 15 ~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~---~p~~G~I~~~g~~i~~~~~~~~~i~~v~Q~~~l~~~~t 91 (369)
T PRK11000 15 DVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLE---DITSGDLFIGEKRMNDVPPAERGVGMVFQSYALYPHLS 91 (369)
T ss_pred CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC---CCCceEEEECCEECCCCCHhHCCEEEEeCCcccCCCCC
Confidence 4679999999998 99999999999999999999999 99999999998765 2223578999999555588999
Q ss_pred ccccchHHHHhcccc----c---hHHHHHHHH-HhcCCccccCCCcCCch-HHHHHHHHH---------hhhccccCCCh
Q 001709 786 MEAARFKDEMWMGIR----D---LSRKTDLIV-LVHNLSHKIPRYNYSSA-SGQQQPALS---------LLLNEAKSLGI 847 (1022)
Q Consensus 786 V~~~~~~ENI~~g~~----~---~~~~v~~~L-~v~gL~~~~~r~~~~LS-GqrQRvaIA---------LLLDEPTSad~ 847 (1022)
| +|||.|+.. . ..+++++++ .+ ||.++.++++.+|| ||||||+|| |||||||++
T Consensus 92 v-----~eni~~~~~~~~~~~~~~~~~~~~~l~~l-gL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLLDEPts~-- 163 (369)
T PRK11000 92 V-----AENMSFGLKLAGAKKEEINQRVNQVAEVL-QLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSN-- 163 (369)
T ss_pred H-----HHHHHhHHhhcCCCHHHHHHHHHHHHHHc-CChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCccc--
Confidence 9 999998753 1 245678888 77 99999999999999 999999999 999999997
Q ss_pred hHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCC-cccccCcccccccCCCCCCCCCCCCCceeeecccccc
Q 001709 848 PWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCP-YVMPGAVSASLSWGASGGDSDGRSGAQKLLHAPINLV 926 (1022)
Q Consensus 848 ~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~-~V~~~~~~a~~l~~~~~~~~~~~~~~~~i~~~pi~l~ 926 (1022)
+|...+..+...+.+..++...++++++|.. .+...++..+++.+ +.+.+.+++..++..|.+.+
T Consensus 164 -----------LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~---G~i~~~g~~~~i~~~p~~~~ 229 (369)
T PRK11000 164 -----------LDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDA---GRVAQVGKPLELYHYPANRF 229 (369)
T ss_pred -----------CCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEEC---CEEEEEcCHHHHHhCcccHH
Confidence 7777777777666544343344666665322 23333344333332 21222344444555555544
Q ss_pred cCCCCC
Q 001709 927 WRPFQR 932 (1022)
Q Consensus 927 ~~pf~~ 932 (1022)
...|.+
T Consensus 230 ~~~~~g 235 (369)
T PRK11000 230 VAGFIG 235 (369)
T ss_pred HHHhcC
Confidence 444444
No 38
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.96 E-value=8.6e-29 Score=260.89 Aligned_cols=192 Identities=16% Similarity=0.171 Sum_probs=152.3
Q ss_pred ccccCceeEEEEecCCCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc-------h
Q 001709 695 IRPEGLSDVFIFCTSDFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD-------Q 764 (1022)
Q Consensus 695 i~~~~l~~~~~~~~~~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~-------~ 764 (1022)
|++++++++| ++++++|+||||+|+ +|+||||||||||||||+|+|+. +|++|+|.+++.++ .
T Consensus 4 i~~~nl~k~y----p~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~---d~t~G~i~~~g~~i~~~~~k~l 76 (258)
T COG3638 4 IEVKNLSKTY----PGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLV---DPTSGEILFNGVQITKLKGKEL 76 (258)
T ss_pred EEEeeeeeec----CCCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhccc---CCCcceEEecccchhccchHHH
Confidence 5666677643 267899999999999 99999999999999999999999 99999999998553 3
Q ss_pred hhhcCceEEEcCCCCCCccccccccchHHHHhccccc---------------hHHHHHHHH-HhcCCccccCCCcCCch-
Q 001709 765 EGIAGGLCYCDSAGVNLQELTMEAARFKDEMWMGIRD---------------LSRKTDLIV-LVHNLSHKIPRYNYSSA- 827 (1022)
Q Consensus 765 ~~lr~~IGyV~Q~~~~~~~lTV~~~~~~ENI~~g~~~---------------~~~~v~~~L-~v~gL~~~~~r~~~~LS- 827 (1022)
..+|++|||+||...+.+.+|| .+|+..|... .+..+-++| .+ |+.+++-++..+||
T Consensus 77 r~~r~~iGmIfQ~~nLv~r~sv-----~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLerv-gi~~~A~qra~~LSG 150 (258)
T COG3638 77 RKLRRDIGMIFQQFNLVPRLSV-----LENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERV-GILDKAYQRASTLSG 150 (258)
T ss_pred HHHHHhceeEeccCCcccccHH-----HHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHc-CcHHHHHHHhccCCc
Confidence 4568999999994444889999 9999988652 345567778 88 99999999999999
Q ss_pred HHHHHHHHH---------hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCCcccccCccc
Q 001709 828 SGQQQPALS---------LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCPYVMPGAVSA 898 (1022)
Q Consensus 828 GqrQRvaIA---------LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~~V~~~~~~a 898 (1022)
||||||+|| +|.|||+++ +|+..-+..++.+.++-++ .+.+++++ .|..+-|
T Consensus 151 GQQQRVaIARaL~Q~pkiILADEPvas-------------LDp~~a~~Vm~~l~~in~~-~g~Tvi~n-----LH~vdlA 211 (258)
T COG3638 151 GQQQRVAIARALVQQPKIILADEPVAS-------------LDPESAKKVMDILKDINQE-DGITVIVN-----LHQVDLA 211 (258)
T ss_pred chhHHHHHHHHHhcCCCEEecCCcccc-------------cChhhHHHHHHHHHHHHHH-cCCEEEEE-----echHHHH
Confidence 999999999 999999996 5666666666665555444 45666664 5777777
Q ss_pred ccccCCCCCCCCCCCCCceeeecc
Q 001709 899 SLSWGASGGDSDGRSGAQKLLHAP 922 (1022)
Q Consensus 899 ~~l~~~~~~~~~~~~~~~~i~~~p 922 (1022)
.-.++|+.+ +..+..++..|
T Consensus 212 ~~Y~~Riig----l~~G~ivfDg~ 231 (258)
T COG3638 212 KKYADRIIG----LKAGRIVFDGP 231 (258)
T ss_pred HHHHhhheE----ecCCcEEEeCC
Confidence 777888777 44455555444
No 39
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.96 E-value=5e-29 Score=255.65 Aligned_cols=138 Identities=25% Similarity=0.278 Sum_probs=119.8
Q ss_pred ccccCceeEEEEecCCCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc-------h
Q 001709 695 IRPEGLSDVFIFCTSDFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD-------Q 764 (1022)
Q Consensus 695 i~~~~l~~~~~~~~~~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~-------~ 764 (1022)
|+++++++ .|. ++.+||+||||+|+ ++-|+||||||||||||+|.+.+ +|+.|+|++++.++ .
T Consensus 2 I~f~~V~k---~Y~-~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e---~pt~G~i~~~~~dl~~l~~~~i 74 (223)
T COG2884 2 IRFENVSK---AYP-GGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEE---RPTRGKILVNGHDLSRLKGREI 74 (223)
T ss_pred eeehhhhh---hcC-CCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhh---cCCCceEEECCeeccccccccc
Confidence 34444444 333 34779999999998 99999999999999999999999 99999999997664 2
Q ss_pred hhhcCceEEEcCCCCCCccccccccchHHHHhcccc-------chHHHHHHHH-HhcCCccccCCCcCCch-HHHHHHHH
Q 001709 765 EGIAGGLCYCDSAGVNLQELTMEAARFKDEMWMGIR-------DLSRKTDLIV-LVHNLSHKIPRYNYSSA-SGQQQPAL 835 (1022)
Q Consensus 765 ~~lr~~IGyV~Q~~~~~~~lTV~~~~~~ENI~~g~~-------~~~~~v~~~L-~v~gL~~~~~r~~~~LS-GqrQRvaI 835 (1022)
.-+|++||+|||+.-+++++|| +||++|..+ ..++++.++| .| ||.++++..|.+|| |+||||+|
T Consensus 75 P~LRR~IGvVFQD~rLL~~~tv-----yeNVA~pL~v~G~~~~~i~~rV~~~L~~V-gL~~k~~~lP~~LSGGEQQRvaI 148 (223)
T COG2884 75 PFLRRQIGVVFQDFRLLPDRTV-----YENVALPLRVIGKPPREIRRRVSEVLDLV-GLKHKARALPSQLSGGEQQRVAI 148 (223)
T ss_pred chhhheeeeEeeeccccccchH-----hhhhhhhhhccCCCHHHHHHHHHHHHHHh-ccchhhhcCccccCchHHHHHHH
Confidence 3579999999995455999999 999999876 2678899999 99 99999999999999 99999999
Q ss_pred H---------hhhccccCC
Q 001709 836 S---------LLLNEAKSL 845 (1022)
Q Consensus 836 A---------LLLDEPTSa 845 (1022)
| ||.||||..
T Consensus 149 ARAiV~~P~vLlADEPTGN 167 (223)
T COG2884 149 ARAIVNQPAVLLADEPTGN 167 (223)
T ss_pred HHHHccCCCeEeecCCCCC
Confidence 9 999999986
No 40
>PLN02761 lipase class 3 family protein
Probab=99.96 E-value=1.1e-28 Score=283.24 Aligned_cols=157 Identities=19% Similarity=0.241 Sum_probs=118.3
Q ss_pred CeEEEEEcCCCCchhhhhhccccccccccccchhhhhhhccccchhhhhccCCCCCCCCCCCCCcccCCCCCCcccHhHH
Q 001709 133 DTLFASFIGTKQYKDVMTDANILQGAIFHEDAIEDMEGIELGESKQAKEQKGNGENRWNPLEKPRQLKDKPKPAAHRGFL 212 (1022)
Q Consensus 133 ~~IVVAFRGT~s~~DwitDl~~~q~~~f~~~~l~~~~~~~a~~~~~~~~q~g~~~~~g~~~~~~k~~~~~~~~~VH~GFl 212 (1022)
+.||||||||.+..||++|+++.+.+. . ...+++|+||+||+
T Consensus 212 RdIVVAfRGT~t~~EWi~DL~~~lvpa----~----------------------------------~~~~~~~kVH~GFl 253 (527)
T PLN02761 212 RDIVIAWRGTVTYLEWIYDLKDILCSA----N----------------------------------FGDDPSIKIELGFH 253 (527)
T ss_pred ceEEEEEcCCCcHHHHHHhcccccccc----C----------------------------------CCCCCchhHHHHHH
Confidence 369999999999999999999865431 0 01145789999999
Q ss_pred HHHh-----------cChhHHHH----HHHhc------CCCeEEEeccChhHHHHHHHHHHHHHHHhhhcccccCCCcce
Q 001709 213 ARAK-----------GIPALELY----RLAQK------KKRKLVLCGHSLGGAVAALATLAILRVVAASSSLKENDKVQV 271 (1022)
Q Consensus 213 ~a~~-----------~I~~~~l~----~l~~~------p~ykLVvTGHSLGGALAtLAAl~LLr~~~~~~~~~~~~~~~V 271 (1022)
..|. +++.+++. .+.+| ++++|+|||||||||||+|+|+++..... +.+.......+|
T Consensus 254 s~Yts~~~~~~~~k~SaR~qVl~eV~rL~~~Y~~~~k~e~~sItVTGHSLGGALAtLaA~DIa~~gl-n~~~~~~~~~PV 332 (527)
T PLN02761 254 DLYTKKEDSCKFSSFSAREQVLAEVKRLVEYYGTEEEGHEISITVTGHSLGASLALVSAYDIAELNL-NHVPENNYKIPI 332 (527)
T ss_pred HHhhccCccccccchhHHHHHHHHHHHHHHhcccccCCCCceEEEeccchHHHHHHHHHHHHHHhcc-ccccccccCCce
Confidence 9997 34444432 24455 46899999999999999999999854210 000001224468
Q ss_pred EEEEeCCCccccHHHHHHHHhcCCCceeEEEeeCCCcccccCCC-------------------CccccCCCceeeecC
Q 001709 272 KCITFSQPPVGNAALRDYVNRKGWQHYFKSYCIPEDLVPRILSP-------------------AYFHHYNNVQPLLVS 330 (1022)
Q Consensus 272 ~vyTFGqPRVGN~aFA~~v~~~~~~~~f~RVVh~~DiVPrLP~~-------------------~~f~H~~~Evw~~~~ 330 (1022)
.+||||+|||||.+|++|+++.+. .+.||||.+|+||++|+. ..|+|.|.|+.++..
T Consensus 333 tv~TFGsPRVGN~~FA~~~d~l~~--~~lRVvN~~D~VP~lP~~~~~e~~~~~~~~~~~~~~~~~Y~hVG~EL~iD~~ 408 (527)
T PLN02761 333 TVFSFSGPRVGNLRFKERCDELGV--KVLRVVNVHDKVPSVPGIFTNEKFQFQKYVEEKTSFPWSYAHVGVELALDHK 408 (527)
T ss_pred EEEEcCCCCcCCHHHHHHHHhcCC--cEEEEEcCCCCcCCCCcccccccchhhhhhhccccCcceeeeeeeEEEEcCC
Confidence 999999999999999999998732 345999999999999962 259999999998754
No 41
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.96 E-value=2.4e-28 Score=272.66 Aligned_cols=168 Identities=17% Similarity=0.167 Sum_probs=134.5
Q ss_pred eeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc----h---hhhcCceEEEcCCCCCC
Q 001709 712 TTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD----Q---EGIAGGLCYCDSAGVNL 781 (1022)
Q Consensus 712 ~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~----~---~~lr~~IGyV~Q~~~~~ 781 (1022)
.++|+||||+|+ +++|+||||||||||+|+|+|++ +|++|+|.++|.++ . ...|++||||||+..++
T Consensus 18 ~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~---~p~~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~ 94 (343)
T TIGR02314 18 IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLE---RPTSGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLL 94 (343)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC---CCCceEEEECCEECCcCCHHHHHHHhcCEEEEECCcccc
Confidence 579999999999 99999999999999999999999 99999999998664 1 23478899999954448
Q ss_pred ccccccccchHHHHhcccc-------chHHHHHHHH-HhcCCccccCCCcCCch-HHHHHHHHH---------hhhcccc
Q 001709 782 QELTMEAARFKDEMWMGIR-------DLSRKTDLIV-LVHNLSHKIPRYNYSSA-SGQQQPALS---------LLLNEAK 843 (1022)
Q Consensus 782 ~~lTV~~~~~~ENI~~g~~-------~~~~~v~~~L-~v~gL~~~~~r~~~~LS-GqrQRvaIA---------LLLDEPT 843 (1022)
+.+|| +||+.|+.. ...+++.+++ .+ ||.++.++++.+|| ||||||+|| |||||||
T Consensus 95 ~~~tv-----~eni~~~~~~~~~~~~~~~~~v~e~l~~v-gL~~~~~~~~~~LSgGqkQRV~IARAL~~~P~iLLlDEPt 168 (343)
T TIGR02314 95 SSRTV-----FGNVALPLELDNTPKDEIKRKVTELLALV-GLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEAT 168 (343)
T ss_pred ccCcH-----HHHHHHHHHHcCCCHHHHHHHHHHHHHHc-CCchhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCc
Confidence 88999 999998653 1345678888 88 99999999999999 999999999 9999999
Q ss_pred CCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCCccc-ccCcccccc
Q 001709 844 SLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCPYVM-PGAVSASLS 901 (1022)
Q Consensus 844 Sad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~~V~-~~~~~a~~l 901 (1022)
|+ +|+.++..+...+.+..+...-++++++|-..++ ..++..+++
T Consensus 169 s~-------------LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl 214 (343)
T TIGR02314 169 SA-------------LDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVI 214 (343)
T ss_pred cc-------------CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 97 7777888777766655554455666666333332 334444444
No 42
>PLN03037 lipase class 3 family protein; Provisional
Probab=99.95 E-value=2e-28 Score=281.12 Aligned_cols=152 Identities=22% Similarity=0.273 Sum_probs=115.4
Q ss_pred CeEEEEEcCCCCchhhhhhccccccccccccchhhhhhhccccchhhhhccCCCCCCCCCCCCCcccCCCCCCcccHhHH
Q 001709 133 DTLFASFIGTKQYKDVMTDANILQGAIFHEDAIEDMEGIELGESKQAKEQKGNGENRWNPLEKPRQLKDKPKPAAHRGFL 212 (1022)
Q Consensus 133 ~~IVVAFRGT~s~~DwitDl~~~q~~~f~~~~l~~~~~~~a~~~~~~~~q~g~~~~~g~~~~~~k~~~~~~~~~VH~GFl 212 (1022)
+.||||||||.+..||++|+++.+.++... + ...+..|+||+||+
T Consensus 235 RdIVVAfRGT~s~~EWl~DL~~~lvp~~~~---------------------------~--------~~~~~~~kVH~GFl 279 (525)
T PLN03037 235 RDIVVAWRGTVAPTEWFMDLRTSLEPFDCD---------------------------G--------DHGKNVVKVQSGFL 279 (525)
T ss_pred ceEEEEECCCCCHHHHHHhhhccccccccc---------------------------c--------CCCCCCceeeHhHH
Confidence 479999999999999999998866543100 0 00145789999999
Q ss_pred HHHhcC-----------hhHHHH----HHHhc----CCCeEEEeccChhHHHHHHHHHHHHHHHhhhcccccCCCcceEE
Q 001709 213 ARAKGI-----------PALELY----RLAQK----KKRKLVLCGHSLGGAVAALATLAILRVVAASSSLKENDKVQVKC 273 (1022)
Q Consensus 213 ~a~~~I-----------~~~~l~----~l~~~----p~ykLVvTGHSLGGALAtLAAl~LLr~~~~~~~~~~~~~~~V~v 273 (1022)
..|.+. +.+++. .+..| ++++|+|||||||||||+|+|+++.... . ...++.|
T Consensus 280 slYtS~~~~s~fnk~SareQVl~eV~rLv~~Yk~~ge~~SItVTGHSLGGALAtLaA~DIa~~~-------p-~~~~Vtv 351 (525)
T PLN03037 280 SIYKSKSELTRYNKLSASEQVMEEVKRLVNFFKDRGEEVSLTITGHSLGGALALLNAYEAARSV-------P-ALSNISV 351 (525)
T ss_pred HHHhCcccccccccchhHHHHHHHHHHHHHhccccCCcceEEEeccCHHHHHHHHHHHHHHHhC-------C-CCCCeeE
Confidence 999853 222222 23344 4689999999999999999998885432 1 1226899
Q ss_pred EEeCCCccccHHHHHHHHhcCCCceeEEEeeCCCcccccCCC-----------------CccccCCCceeeec
Q 001709 274 ITFSQPPVGNAALRDYVNRKGWQHYFKSYCIPEDLVPRILSP-----------------AYFHHYNNVQPLLV 329 (1022)
Q Consensus 274 yTFGqPRVGN~aFA~~v~~~~~~~~f~RVVh~~DiVPrLP~~-----------------~~f~H~~~Evw~~~ 329 (1022)
||||+|||||.+|++++++.+. .++||||.+|+||++|+. ..|.|.|.|.-++.
T Consensus 352 yTFGsPRVGN~aFA~~~~~l~~--~~lRVVN~~DiVP~lPp~~~~~~~~~~~~~~~~~~w~Y~hVG~eL~lD~ 422 (525)
T PLN03037 352 ISFGAPRVGNLAFKEKLNELGV--KVLRVVNKQDIVPKLPGIIFNKILNKLNPITSRLNWVYRHVGTQLKLDM 422 (525)
T ss_pred EEecCCCccCHHHHHHHHhcCC--CEEEEEECCCccccCCchhhccchhhcccccccCCceeEecceeEEecC
Confidence 9999999999999999998743 355999999999999973 14889998877763
No 43
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.95 E-value=2.7e-28 Score=266.74 Aligned_cols=163 Identities=20% Similarity=0.267 Sum_probs=131.8
Q ss_pred ccccCceeEEEEecCC-CeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc---hhhh
Q 001709 695 IRPEGLSDVFIFCTSD-FTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD---QEGI 767 (1022)
Q Consensus 695 i~~~~l~~~~~~~~~~-~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~---~~~l 767 (1022)
+...++++.+ + .+.+|+||||+|+ ++||+||||||||||||+|+|++ .|++|+|.++|.+. ....
T Consensus 5 i~~~~l~k~~-----~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~---~p~~G~i~i~G~~~~~~~~~~ 76 (293)
T COG1131 5 IEVRNLTKKY-----GGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLL---KPTSGEILVLGYDVVKEPAKV 76 (293)
T ss_pred eeecceEEEe-----CCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCc---CCCceEEEEcCEeCccCHHHH
Confidence 3445666533 5 5789999999999 99999999999999999999999 99999999999766 3577
Q ss_pred cCceEEEcCCCCCCccccccccchHHHHhcccc--c-----hHHHHHHHH-HhcCCccccCCCcCCch-HHHHHHHHH--
Q 001709 768 AGGLCYCDSAGVNLQELTMEAARFKDEMWMGIR--D-----LSRKTDLIV-LVHNLSHKIPRYNYSSA-SGQQQPALS-- 836 (1022)
Q Consensus 768 r~~IGyV~Q~~~~~~~lTV~~~~~~ENI~~g~~--~-----~~~~v~~~L-~v~gL~~~~~r~~~~LS-GqrQRvaIA-- 836 (1022)
+++||||+|++..++++|+ +||+.|... . ..+++++++ .+ ||.+..++++.+|| |||||++||
T Consensus 77 ~~~igy~~~~~~~~~~lT~-----~e~l~~~~~l~~~~~~~~~~~~~~~l~~~-~L~~~~~~~~~~lS~G~kqrl~ia~a 150 (293)
T COG1131 77 RRRIGYVPQEPSLYPELTV-----RENLEFFARLYGLSKEEAEERIEELLELF-GLEDKANKKVRTLSGGMKQRLSIALA 150 (293)
T ss_pred HhheEEEccCCCCCccccH-----HHHHHHHHHHhCCChhHHHHHHHHHHHHc-CCchhhCcchhhcCHHHHHHHHHHHH
Confidence 8899999996666999999 999988544 1 356899999 88 99987789999999 999999999
Q ss_pred -------hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEE
Q 001709 837 -------LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVI 885 (1022)
Q Consensus 837 -------LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv 885 (1022)
|||||||++ +|+..+..+...+.+. ....++++++
T Consensus 151 L~~~P~lliLDEPt~G-------------LDp~~~~~~~~~l~~l-~~~g~~tvli 192 (293)
T COG1131 151 LLHDPELLILDEPTSG-------------LDPESRREIWELLREL-AKEGGVTILL 192 (293)
T ss_pred HhcCCCEEEECCCCcC-------------CCHHHHHHHHHHHHHH-HhCCCcEEEE
Confidence 999999997 5666666655555333 3333344444
No 44
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=4e-28 Score=254.57 Aligned_cols=155 Identities=19% Similarity=0.183 Sum_probs=126.0
Q ss_pred CCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc-h------hhhcCceEEEcCCCC
Q 001709 710 DFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD-Q------EGIAGGLCYCDSAGV 779 (1022)
Q Consensus 710 ~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~-~------~~lr~~IGyV~Q~~~ 779 (1022)
+..++|+||||+|+ +++|+||||||||||+|+|+|++ +|++|+|.+++.++ . ...++.|+||+|+..
T Consensus 11 ~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~---~p~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~ 87 (235)
T cd03261 11 GGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLL---RPDSGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGA 87 (235)
T ss_pred CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC---CCCceEEEECCEEccccChhhHHHHhcceEEEccCcc
Confidence 34679999999998 99999999999999999999999 99999999998654 1 345778999999554
Q ss_pred CCccccccccchHHHHhcccc-----c---hHHHHHHHH-HhcCCccccCCCcCCch-HHHHHHHHH---------hhhc
Q 001709 780 NLQELTMEAARFKDEMWMGIR-----D---LSRKTDLIV-LVHNLSHKIPRYNYSSA-SGQQQPALS---------LLLN 840 (1022)
Q Consensus 780 ~~~~lTV~~~~~~ENI~~g~~-----~---~~~~v~~~L-~v~gL~~~~~r~~~~LS-GqrQRvaIA---------LLLD 840 (1022)
.++.+|| +||+.++.. . ..+++.+++ .+ ||.+..++++.+|| |||||++|| ||||
T Consensus 88 ~~~~~tv-----~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllD 161 (235)
T cd03261 88 LFDSLTV-----FENVAFPLREHTRLSEEEIREIVLEKLEAV-GLRGAEDLYPAELSGGMKKRVALARALALDPELLLYD 161 (235)
T ss_pred cCCCCcH-----HHHHHHHHhhccCCCHHHHHHHHHHHHHHc-CCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEec
Confidence 5888999 999987532 1 234577788 77 99988999999999 999999999 9999
Q ss_pred cccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEe
Q 001709 841 EAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVIN 886 (1022)
Q Consensus 841 EPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~ 886 (1022)
|||++ +|...+..+...+.+..+....++++++
T Consensus 162 EPt~~-------------LD~~~~~~l~~~l~~~~~~~~~tvi~vs 194 (235)
T cd03261 162 EPTAG-------------LDPIASGVIDDLIRSLKKELGLTSIMVT 194 (235)
T ss_pred CCccc-------------CCHHHHHHHHHHHHHHHHhcCcEEEEEe
Confidence 99997 7777777777666544333344666665
No 45
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.95 E-value=4.8e-28 Score=250.64 Aligned_cols=165 Identities=19% Similarity=0.198 Sum_probs=130.1
Q ss_pred eeEEEEecCCCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc-h------hhhcCc
Q 001709 701 SDVFIFCTSDFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD-Q------EGIAGG 770 (1022)
Q Consensus 701 ~~~~~~~~~~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~-~------~~lr~~ 770 (1022)
+++.+.+..+.+++|++|||+++ +++|+||||||||||+|+|+|++ +|++|+|.++|.++ . ...++.
T Consensus 5 ~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~---~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 81 (216)
T TIGR00960 5 EQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIE---KPTRGKIRFNGQDLTRLRGREIPFLRRH 81 (216)
T ss_pred EEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC---CCCceEEEECCEehhhcChhHHHHHHHh
Confidence 34444443223579999999998 99999999999999999999999 99999999998654 1 124678
Q ss_pred eEEEcCCCCCCccccccccchHHHHhcccc-------chHHHHHHHH-HhcCCccccCCCcCCch-HHHHHHHHH-----
Q 001709 771 LCYCDSAGVNLQELTMEAARFKDEMWMGIR-------DLSRKTDLIV-LVHNLSHKIPRYNYSSA-SGQQQPALS----- 836 (1022)
Q Consensus 771 IGyV~Q~~~~~~~lTV~~~~~~ENI~~g~~-------~~~~~v~~~L-~v~gL~~~~~r~~~~LS-GqrQRvaIA----- 836 (1022)
|+|++|+...++.+|+ .||+.++.. ...+++.+++ .+ ||.+..++++.+|| |||||++||
T Consensus 82 i~~~~q~~~~~~~~tv-----~e~l~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~LSgG~~qrv~laral~~ 155 (216)
T TIGR00960 82 IGMVFQDHRLLSDRTV-----YDNVAFPLRIIGVPPRDANERVSAALEKV-GLEGKAHALPMQLSGGEQQRVAIARAIVH 155 (216)
T ss_pred ceEEecCccccccccH-----HHHHHHHHHhcCCCHHHHHHHHHHHHHHc-CChhhhhCChhhCCHHHHHHHHHHHHHhc
Confidence 9999995444778999 999987532 1345678888 77 99999999999999 999999999
Q ss_pred ----hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecC
Q 001709 837 ----LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSC 888 (1022)
Q Consensus 837 ----LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~ 888 (1022)
|||||||++ +|...+..+...+.+ +.....++++++|.
T Consensus 156 ~p~llllDEPt~~-------------LD~~~~~~l~~~l~~-~~~~~~tii~vsH~ 197 (216)
T TIGR00960 156 KPPLLLADEPTGN-------------LDPELSRDIMRLFEE-FNRRGTTVLVATHD 197 (216)
T ss_pred CCCEEEEeCCCCc-------------CCHHHHHHHHHHHHH-HHHCCCEEEEEeCC
Confidence 999999997 777777777766644 44444566666643
No 46
>PLN02408 phospholipase A1
Probab=99.95 E-value=3.5e-28 Score=271.73 Aligned_cols=141 Identities=21% Similarity=0.327 Sum_probs=105.9
Q ss_pred eEEEEEcCCCCchhhhhhccccccccccccchhhhhhhccccchhhhhccCCCCCCCCCCCCCcccCCCCCCcccHhHHH
Q 001709 134 TLFASFIGTKQYKDVMTDANILQGAIFHEDAIEDMEGIELGESKQAKEQKGNGENRWNPLEKPRQLKDKPKPAAHRGFLA 213 (1022)
Q Consensus 134 ~IVVAFRGT~s~~DwitDl~~~q~~~f~~~~l~~~~~~~a~~~~~~~~q~g~~~~~g~~~~~~k~~~~~~~~~VH~GFl~ 213 (1022)
.||||||||.+..||++|+++.+.++.... ++ + .+ .....+|+||+||+.
T Consensus 119 dIVVafRGT~s~~dWi~DL~~~l~~~p~~~--~~-~-------------------~~--------~~~~~~~kVH~GFl~ 168 (365)
T PLN02408 119 DVVIAFRGTATCLEWLENLRATLTRLPNAP--TD-M-------------------NG--------SGDGSGPMVESGFLS 168 (365)
T ss_pred eEEEEEcCCCCHHHHHHHhhhceeecCCCC--cc-c-------------------cc--------cCCCCCCeecHhHHH
Confidence 589999999999999999998765531110 00 0 00 001246899999999
Q ss_pred HHhc-------ChhHHH----HHHHhcCCC--eEEEeccChhHHHHHHHHHHHHHHHhhhcccccCCCcceEEEEeCCCc
Q 001709 214 RAKG-------IPALEL----YRLAQKKKR--KLVLCGHSLGGAVAALATLAILRVVAASSSLKENDKVQVKCITFSQPP 280 (1022)
Q Consensus 214 a~~~-------I~~~~l----~~l~~~p~y--kLVvTGHSLGGALAtLAAl~LLr~~~~~~~~~~~~~~~V~vyTFGqPR 280 (1022)
.|.+ ++++++ ..+.+||++ +|+|||||||||||+|+|+++...+ . ....+.|||||+||
T Consensus 169 ~Yts~~~~~~s~r~qVl~eI~~ll~~y~~~~~sI~vTGHSLGGALAtLaA~dl~~~~-------~-~~~~V~v~tFGsPR 240 (365)
T PLN02408 169 LYTSGTAMGPSLQEMVREEIARLLQSYGDEPLSLTITGHSLGAALATLTAYDIKTTF-------K-RAPMVTVISFGGPR 240 (365)
T ss_pred HHhcccccchhHHHHHHHHHHHHHHhcCCCCceEEEeccchHHHHHHHHHHHHHHhc-------C-CCCceEEEEcCCCC
Confidence 9975 333332 235678864 6999999999999999999886432 1 12257899999999
Q ss_pred cccHHHHHHHHhcCCCceeEEEeeCCCcccccCC
Q 001709 281 VGNAALRDYVNRKGWQHYFKSYCIPEDLVPRILS 314 (1022)
Q Consensus 281 VGN~aFA~~v~~~~~~~~f~RVVh~~DiVPrLP~ 314 (1022)
|||.+|++++++.+ ..+.||||.+|+||++|+
T Consensus 241 VGN~~Fa~~~~~~~--~~~lRVvN~~D~VP~vP~ 272 (365)
T PLN02408 241 VGNRSFRRQLEKQG--TKVLRIVNSDDVITKVPG 272 (365)
T ss_pred cccHHHHHHHHhcC--CcEEEEEeCCCCcccCCC
Confidence 99999999999863 234599999999999995
No 47
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.95 E-value=6.9e-28 Score=249.47 Aligned_cols=155 Identities=15% Similarity=0.228 Sum_probs=124.2
Q ss_pred eeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc-h---h---h-hcCceEEEcCCCCC
Q 001709 712 TTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD-Q---E---G-IAGGLCYCDSAGVN 780 (1022)
Q Consensus 712 ~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~-~---~---~-lr~~IGyV~Q~~~~ 780 (1022)
+++|+++||+++ +++|+||||||||||+|+|+|++ +|++|+|.+++.++ . . . .++.++|++|+...
T Consensus 17 ~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~---~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~ 93 (218)
T cd03255 17 VQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLD---RPTSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNL 93 (218)
T ss_pred eeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCc---CCCceeEEECCEehhhcchhHHHHHHhhcEEEEeecccc
Confidence 579999999998 99999999999999999999999 99999999998654 1 1 1 35689999995444
Q ss_pred CccccccccchHHHHhcccc--c-----hHHHHHHHH-HhcCCccccCCCcCCch-HHHHHHHHH---------hhhccc
Q 001709 781 LQELTMEAARFKDEMWMGIR--D-----LSRKTDLIV-LVHNLSHKIPRYNYSSA-SGQQQPALS---------LLLNEA 842 (1022)
Q Consensus 781 ~~~lTV~~~~~~ENI~~g~~--~-----~~~~v~~~L-~v~gL~~~~~r~~~~LS-GqrQRvaIA---------LLLDEP 842 (1022)
++.+|+ +||+.++.. . ..+++++++ .+ ||.+..++++.+|| |||||++|| ||||||
T Consensus 94 ~~~~tv-----~e~l~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP 167 (218)
T cd03255 94 LPDLTA-----LENVELPLLLAGVPKKERRERAEELLERV-GLGDRLNHYPSELSGGQQQRVAIARALANDPKIILADEP 167 (218)
T ss_pred CCCCcH-----HHHHHHHHhhcCCCHHHHHHHHHHHHHHc-CCchhhhcChhhcCHHHHHHHHHHHHHccCCCEEEEcCC
Confidence 777899 999987542 1 235677888 77 99998999999999 999999999 999999
Q ss_pred cCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecC
Q 001709 843 KSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSC 888 (1022)
Q Consensus 843 TSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~ 888 (1022)
|++ +|...+..+...+.+..+....++++++|.
T Consensus 168 ~~~-------------LD~~~~~~l~~~l~~~~~~~~~tii~~sH~ 200 (218)
T cd03255 168 TGN-------------LDSETGKEVMELLRELNKEAGTTIVVVTHD 200 (218)
T ss_pred ccc-------------CCHHHHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 997 777777776666644333234456666533
No 48
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.95 E-value=2.2e-27 Score=254.74 Aligned_cols=167 Identities=17% Similarity=0.168 Sum_probs=134.3
Q ss_pred CcccccCceeEEEEecCCCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccchhhhcC
Q 001709 693 KFIRPEGLSDVFIFCTSDFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADDQEGIAG 769 (1022)
Q Consensus 693 ~~i~~~~l~~~~~~~~~~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~~~~lr~ 769 (1022)
..+++++++. .+ +++++|++|||+|+ +++|+||||||||||+|+|+|++ +|++|+|.+++.++ ..+++
T Consensus 11 ~~l~i~~l~~---~~--~~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~---~p~~G~i~~~g~~~-~~~~~ 81 (257)
T PRK11247 11 TPLLLNAVSK---RY--GERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLE---TPSAGELLAGTAPL-AEARE 81 (257)
T ss_pred CcEEEEEEEE---EE--CCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC---CCCCeEEEECCEEH-HHhhC
Confidence 4466555543 33 34679999999998 99999999999999999999999 99999999987654 34567
Q ss_pred ceEEEcCCCCCCccccccccchHHHHhccccc-hHHHHHHHH-HhcCCccccCCCcCCch-HHHHHHHHH---------h
Q 001709 770 GLCYCDSAGVNLQELTMEAARFKDEMWMGIRD-LSRKTDLIV-LVHNLSHKIPRYNYSSA-SGQQQPALS---------L 837 (1022)
Q Consensus 770 ~IGyV~Q~~~~~~~lTV~~~~~~ENI~~g~~~-~~~~v~~~L-~v~gL~~~~~r~~~~LS-GqrQRvaIA---------L 837 (1022)
.++|++|+...++++|| +||+.++... ..+++.+++ .+ ||.+..++++.+|| |||||++|| |
T Consensus 82 ~i~~v~q~~~l~~~~tv-----~enl~~~~~~~~~~~~~~~l~~~-gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~ll 155 (257)
T PRK11247 82 DTRLMFQDARLLPWKKV-----IDNVGLGLKGQWRDAALQALAAV-GLADRANEWPAALSGGQKQRVALARALIHRPGLL 155 (257)
T ss_pred ceEEEecCccCCCCCcH-----HHHHHhcccchHHHHHHHHHHHc-CChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 89999995444777999 9999886542 345677888 77 99999999999999 999999999 9
Q ss_pred hhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEec
Q 001709 838 LLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINS 887 (1022)
Q Consensus 838 LLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~ 887 (1022)
||||||++ +|...+..+...+.+..++...++++++|
T Consensus 156 lLDEPt~~-------------LD~~~~~~l~~~L~~~~~~~~~tviivsH 192 (257)
T PRK11247 156 LLDEPLGA-------------LDALTRIEMQDLIESLWQQHGFTVLLVTH 192 (257)
T ss_pred EEeCCCCC-------------CCHHHHHHHHHHHHHHHHHcCCEEEEEeC
Confidence 99999997 77777777777665554544456666653
No 49
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=6e-28 Score=249.42 Aligned_cols=156 Identities=21% Similarity=0.251 Sum_probs=125.5
Q ss_pred CeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc--hhhhcCceEEEcCCCCCCcccc
Q 001709 711 FTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD--QEGIAGGLCYCDSAGVNLQELT 785 (1022)
Q Consensus 711 ~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~--~~~lr~~IGyV~Q~~~~~~~lT 785 (1022)
.+++|+||||+++ +++|+||||||||||+|+|+|++ +|++|+|.+++.++ ....++.|+||+|+...++.+|
T Consensus 12 ~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~---~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t 88 (213)
T cd03259 12 SVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLE---RPDSGEILIDGRDVTGVPPERRNIGMVFQDYALFPHLT 88 (213)
T ss_pred CeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC---CCCCeEEEECCEEcCcCchhhccEEEEcCchhhccCCc
Confidence 4679999999998 99999999999999999999999 99999999998765 2234568999999544477899
Q ss_pred ccccchHHHHhcccc-------chHHHHHHHH-HhcCCccccCCCcCCch-HHHHHHHHH---------hhhccccCCCh
Q 001709 786 MEAARFKDEMWMGIR-------DLSRKTDLIV-LVHNLSHKIPRYNYSSA-SGQQQPALS---------LLLNEAKSLGI 847 (1022)
Q Consensus 786 V~~~~~~ENI~~g~~-------~~~~~v~~~L-~v~gL~~~~~r~~~~LS-GqrQRvaIA---------LLLDEPTSad~ 847 (1022)
+ +||+.++.. ...+++.+++ .+ ||.+..++++.+|| |||||++|| |||||||++
T Consensus 89 v-----~~~l~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~lllDEPt~~-- 160 (213)
T cd03259 89 V-----AENIAFGLKLRGVPKAEIRARVRELLELV-GLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSA-- 160 (213)
T ss_pred H-----HHHHHhHHHHcCCCHHHHHHHHHHHHHHc-CChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccc--
Confidence 9 999987532 1234577788 77 99999999999999 999999999 999999997
Q ss_pred hHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecC
Q 001709 848 PWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSC 888 (1022)
Q Consensus 848 ~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~ 888 (1022)
+|...+..+...+.+..+....++++++|.
T Consensus 161 -----------LD~~~~~~l~~~l~~~~~~~~~tii~~sH~ 190 (213)
T cd03259 161 -----------LDAKLREELREELKELQRELGITTIYVTHD 190 (213)
T ss_pred -----------CCHHHHHHHHHHHHHHHHHcCCEEEEEecC
Confidence 777777777766654433334456666533
No 50
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.95 E-value=9.4e-28 Score=246.93 Aligned_cols=153 Identities=18% Similarity=0.220 Sum_probs=125.4
Q ss_pred eeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc-hhhhcCceEEEcCCCCC-Cccccc
Q 001709 712 TTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD-QEGIAGGLCYCDSAGVN-LQELTM 786 (1022)
Q Consensus 712 ~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~-~~~lr~~IGyV~Q~~~~-~~~lTV 786 (1022)
+++|++|||+++ +++|+||||||||||||+|+|++ +|++|+|.+++.++ ....++.|||++|+... ++.+|+
T Consensus 13 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~---~p~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv 89 (205)
T cd03226 13 TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLI---KESSGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSV 89 (205)
T ss_pred CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCC---CCCceEEEECCEEhhhHHhhcceEEEecChhhhhhhccH
Confidence 679999999998 99999999999999999999999 99999999998776 44456789999995433 556899
Q ss_pred cccchHHHHhccccc---hHHHHHHHH-HhcCCccccCCCcCCch-HHHHHHHHH---------hhhccccCCChhHHHH
Q 001709 787 EAARFKDEMWMGIRD---LSRKTDLIV-LVHNLSHKIPRYNYSSA-SGQQQPALS---------LLLNEAKSLGIPWVLA 852 (1022)
Q Consensus 787 ~~~~~~ENI~~g~~~---~~~~v~~~L-~v~gL~~~~~r~~~~LS-GqrQRvaIA---------LLLDEPTSad~~~v~~ 852 (1022)
+||+.++... ..+++.+++ .+ ||.++.++++.+|| |||||++|| |||||||++
T Consensus 90 -----~e~l~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~------- 156 (205)
T cd03226 90 -----REELLLGLKELDAGNEQAETVLKDL-DLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSG------- 156 (205)
T ss_pred -----HHHHhhhhhhcCccHHHHHHHHHHc-CCchhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCcc-------
Confidence 9999886431 335678888 87 99999999999999 999999999 999999997
Q ss_pred HhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEec
Q 001709 853 ITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINS 887 (1022)
Q Consensus 853 I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~ 887 (1022)
+|...+..+...+ +.+.....++++++|
T Consensus 157 ------LD~~~~~~l~~~l-~~~~~~~~tii~~sH 184 (205)
T cd03226 157 ------LDYKNMERVGELI-RELAAQGKAVIVITH 184 (205)
T ss_pred ------CCHHHHHHHHHHH-HHHHHCCCEEEEEeC
Confidence 7777777766655 444444445566653
No 51
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=9.9e-28 Score=249.29 Aligned_cols=155 Identities=17% Similarity=0.167 Sum_probs=125.3
Q ss_pred CCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc---hhhhcCceEEEcCCCCCCcc
Q 001709 710 DFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD---QEGIAGGLCYCDSAGVNLQE 783 (1022)
Q Consensus 710 ~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~---~~~lr~~IGyV~Q~~~~~~~ 783 (1022)
+.+++|+||||+++ +++|+||||||||||+|+|+|++ +|++|+|.+++.++ ....++.++|+||+...++.
T Consensus 11 ~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~---~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~ 87 (220)
T cd03265 11 GDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLL---KPTSGRATVAGHDVVREPREVRRRIGIVFQDLSVDDE 87 (220)
T ss_pred CCEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCC---CCCceEEEECCEecCcChHHHhhcEEEecCCcccccc
Confidence 34679999999998 99999999999999999999999 99999999998654 23456789999995445777
Q ss_pred ccccccchHHHHhcccc-------chHHHHHHHH-HhcCCccccCCCcCCch-HHHHHHHHH---------hhhccccCC
Q 001709 784 LTMEAARFKDEMWMGIR-------DLSRKTDLIV-LVHNLSHKIPRYNYSSA-SGQQQPALS---------LLLNEAKSL 845 (1022)
Q Consensus 784 lTV~~~~~~ENI~~g~~-------~~~~~v~~~L-~v~gL~~~~~r~~~~LS-GqrQRvaIA---------LLLDEPTSa 845 (1022)
+|+ +||+.++.. ...+++++++ .+ +|.+..++++.+|| |||||++|| |||||||++
T Consensus 88 ~tv-----~~~l~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~llllDEPt~~ 161 (220)
T cd03265 88 LTG-----WENLYIHARLYGVPGAERRERIDELLDFV-GLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIG 161 (220)
T ss_pred CcH-----HHHHHHHHHHcCCCHHHHHHHHHHHHHHc-CCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccC
Confidence 899 999987432 1245678888 87 99999999999999 999999999 999999997
Q ss_pred ChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEe
Q 001709 846 GIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVIN 886 (1022)
Q Consensus 846 d~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~ 886 (1022)
+|...+..+...+.+.......++++++
T Consensus 162 -------------LD~~~~~~l~~~l~~~~~~~~~tvi~~t 189 (220)
T cd03265 162 -------------LDPQTRAHVWEYIEKLKEEFGMTILLTT 189 (220)
T ss_pred -------------CCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 7777777776666544332234555555
No 52
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.95 E-value=7.5e-28 Score=254.86 Aligned_cols=166 Identities=13% Similarity=0.134 Sum_probs=135.4
Q ss_pred eEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc-h----hhhcCceEEEcCCCCC--Cc
Q 001709 713 TVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD-Q----EGIAGGLCYCDSAGVN--LQ 782 (1022)
Q Consensus 713 ~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~-~----~~lr~~IGyV~Q~~~~--~~ 782 (1022)
++|++|||+|+ ++||+|+||||||||.|+|+|+. +|++|+|.++|... . ...++.|.||||++.. -|
T Consensus 21 ~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~---~p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP 97 (252)
T COG1124 21 HALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLE---KPSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNP 97 (252)
T ss_pred hhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhccc---CCCCceEEECCcccCccccchhhccceeEEecCCccccCc
Confidence 69999999999 99999999999999999999999 99999999999665 2 2457889999997655 58
Q ss_pred cccccccchHHHHhcccc-----chHHHHHHHH-HhcCCc-cccCCCcCCch-HHHHHHHHH---------hhhccccCC
Q 001709 783 ELTMEAARFKDEMWMGIR-----DLSRKTDLIV-LVHNLS-HKIPRYNYSSA-SGQQQPALS---------LLLNEAKSL 845 (1022)
Q Consensus 783 ~lTV~~~~~~ENI~~g~~-----~~~~~v~~~L-~v~gL~-~~~~r~~~~LS-GqrQRvaIA---------LLLDEPTSa 845 (1022)
..|| .+-|.-+.. +.++++.+++ .| ||. .+++|+|++|| ||+||+||| ||||||||+
T Consensus 98 ~~tv-----~~~l~Epl~~~~~~~~~~~i~~~L~~V-gL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~PklLIlDEptSa 171 (252)
T COG1124 98 RRTV-----GRILSEPLRPHGLSKSQQRIAELLDQV-GLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSA 171 (252)
T ss_pred chhH-----HHHHhhhhccCCccHHHHHHHHHHHHc-CCCHHHHhcCchhcChhHHHHHHHHHHhccCCCEEEecCchhh
Confidence 8899 776655443 2556688999 99 996 68999999999 999999999 999999997
Q ss_pred ChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCC-eEEEEecCCcccccCcccccccCCCCC
Q 001709 846 GIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPS-TTEVINSCPYVMPGAVSASLSWGASGG 907 (1022)
Q Consensus 846 d~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~-~~vVv~~~~~V~~~~~~a~~l~~~~~~ 907 (1022)
||...|..++..+.+. ++..+ +.++|. |+..-+-++++|+.+
T Consensus 172 -------------LD~siQa~IlnlL~~l-~~~~~lt~l~Is------Hdl~~v~~~cdRi~V 214 (252)
T COG1124 172 -------------LDVSVQAQILNLLLEL-KKERGLTYLFIS------HDLALVEHMCDRIAV 214 (252)
T ss_pred -------------hcHHHHHHHHHHHHHH-HHhcCceEEEEe------CcHHHHHHHhhheee
Confidence 6777777776666444 44445 444444 777777788888877
No 53
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.95 E-value=2.7e-28 Score=292.99 Aligned_cols=225 Identities=17% Similarity=0.157 Sum_probs=165.3
Q ss_pred hhhccCcCCCCCCc----------cccccccCCCcchhhcccCCCCCCCCCCcccccCceeEEEEecCCCeeEEEeeeEE
Q 001709 652 RVLVGAPLRRPPNL----------SISVFPSIDSETIDCCMEHGSGSADDEKFIRPEGLSDVFIFCTSDFTTVFKEVHFR 721 (1022)
Q Consensus 652 r~~~~~Plk~l~~~----------~~~vf~~ld~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~aLkdVSL~ 721 (1022)
...+.+|+.++.+. .+|+.+++|.+++.+..............|+ +++++|.|..+...+|+|+||+
T Consensus 419 ~~~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~~E~~~~~~~~~~~~~~g~I~---~~nvsf~y~~~~~~vL~~isL~ 495 (709)
T COG2274 419 AGYFISPITRLSQLWTDFQQAKVALERLGDILDTPPEQEGDKTLIHLPKLQGEIE---FENVSFRYGPDDPPVLEDLSLE 495 (709)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccccccccCceEE---EEEEEEEeCCCCcchhhceeEE
Confidence 34455566655555 5666677776663221111111222233355 6777777776666899999999
Q ss_pred Ee---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc----hhhhcCceEEEcCCCCCCccccccccchHHH
Q 001709 722 TR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD----QEGIAGGLCYCDSAGVNLQELTMEAARFKDE 794 (1022)
Q Consensus 722 V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~----~~~lr~~IGyV~Q~~~~~~~lTV~~~~~~EN 794 (1022)
|+ +|||+|+||||||||+|+|+|+| +|++|+|.+||.|. ...+|++||||+| +..++..|+ +||
T Consensus 496 I~~Ge~vaIvG~SGsGKSTL~KLL~gly---~p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q-~~~Lf~gSI-----~eN 566 (709)
T COG2274 496 IPPGEKVAIVGRSGSGKSTLLKLLLGLY---KPQQGRILLDGVDLNDIDLASLRRQVGYVLQ-DPFLFSGSI-----REN 566 (709)
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHhcCC---CCCCceEEECCEeHHhcCHHHHHhheeEEcc-cchhhcCcH-----HHH
Confidence 99 99999999999999999999999 99999999998765 7789999999999 666666999 999
Q ss_pred Hhccccc-hHHH----------HHHHH-HhcCCccccCCCcCCch-HHHHHHHHH---------hhhccccCCChhHHHH
Q 001709 795 MWMGIRD-LSRK----------TDLIV-LVHNLSHKIPRYNYSSA-SGQQQPALS---------LLLNEAKSLGIPWVLA 852 (1022)
Q Consensus 795 I~~g~~~-~~~~----------v~~~L-~v~gL~~~~~r~~~~LS-GqrQRvaIA---------LLLDEPTSad~~~v~~ 852 (1022)
|.++..+ ..+. .+.+. +.+|++....+....|| |||||++|| ||||||||+
T Consensus 567 i~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSa------- 639 (709)
T COG2274 567 IALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSA------- 639 (709)
T ss_pred HhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCCCEEEEeCcccc-------
Confidence 9999874 1122 23333 55567777788899999 999999999 999999997
Q ss_pred HhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCCcccccCcccccccC
Q 001709 853 ITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCPYVMPGAVSASLSWG 903 (1022)
Q Consensus 853 I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~~V~~~~~~a~~l~~ 903 (1022)
+|..+.+.....+.+..+ ..|++++.|-...+..+|..+.+.+
T Consensus 640 ------LD~~sE~~I~~~L~~~~~--~~T~I~IaHRl~ti~~adrIiVl~~ 682 (709)
T COG2274 640 ------LDPETEAIILQNLLQILQ--GRTVIIIAHRLSTIRSADRIIVLDQ 682 (709)
T ss_pred ------cCHhHHHHHHHHHHHHhc--CCeEEEEEccchHhhhccEEEEccC
Confidence 777776666665544322 2577777777777777776666554
No 54
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.95 E-value=9.8e-28 Score=263.31 Aligned_cols=164 Identities=14% Similarity=0.105 Sum_probs=129.7
Q ss_pred cccccCceeEEEEecCCCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc---hhhh
Q 001709 694 FIRPEGLSDVFIFCTSDFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD---QEGI 767 (1022)
Q Consensus 694 ~i~~~~l~~~~~~~~~~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~---~~~l 767 (1022)
.+.++++++ .+ +...+|+||||+|+ +++|+||||||||||+|+|+|++ +|++|+|.++|.++ ....
T Consensus 7 ~i~i~~l~k---~~--~~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~---~p~~G~v~i~G~~~~~~~~~~ 78 (306)
T PRK13537 7 PIDFRNVEK---RY--GDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLT---HPDAGSISLCGEPVPSRARHA 78 (306)
T ss_pred eEEEEeEEE---EE--CCeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCC---CCCceEEEECCEecccchHHH
Confidence 355556654 33 34689999999998 99999999999999999999999 99999999998775 3456
Q ss_pred cCceEEEcCCCCCCccccccccchHHHHhcccc----c---hHHHHHHHH-HhcCCccccCCCcCCch-HHHHHHHHH--
Q 001709 768 AGGLCYCDSAGVNLQELTMEAARFKDEMWMGIR----D---LSRKTDLIV-LVHNLSHKIPRYNYSSA-SGQQQPALS-- 836 (1022)
Q Consensus 768 r~~IGyV~Q~~~~~~~lTV~~~~~~ENI~~g~~----~---~~~~v~~~L-~v~gL~~~~~r~~~~LS-GqrQRvaIA-- 836 (1022)
+++||||||+...++++|+ +||+.|... . ..+++++++ .+ +|.+..++++.+|| |||||++||
T Consensus 79 ~~~ig~v~q~~~~~~~~tv-----~e~l~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~LS~G~~qrl~la~a 152 (306)
T PRK13537 79 RQRVGVVPQFDNLDPDFTV-----RENLLVFGRYFGLSAAAARALVPPLLEFA-KLENKADAKVGELSGGMKRRLTLARA 152 (306)
T ss_pred HhcEEEEeccCcCCCCCcH-----HHHHHHHHHHcCCCHHHHHHHHHHHHHHc-CCchHhcCchhhCCHHHHHHHHHHHH
Confidence 7889999995444788999 999986322 1 245677888 77 99999999999999 999999999
Q ss_pred -------hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEE
Q 001709 837 -------LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVI 885 (1022)
Q Consensus 837 -------LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv 885 (1022)
|||||||++ +|+..+..+...+.+ +.+...++++.
T Consensus 153 L~~~P~lllLDEPt~g-------------LD~~~~~~l~~~l~~-l~~~g~till~ 194 (306)
T PRK13537 153 LVNDPDVLVLDEPTTG-------------LDPQARHLMWERLRS-LLARGKTILLT 194 (306)
T ss_pred HhCCCCEEEEeCCCcC-------------CCHHHHHHHHHHHHH-HHhCCCEEEEE
Confidence 999999997 677777766665543 34433344444
No 55
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=3.6e-28 Score=285.61 Aligned_cols=166 Identities=18% Similarity=0.208 Sum_probs=133.1
Q ss_pred cccccccCCCcchhhcccCCCCCC-CCCCcccccCceeEEEEecCC-CeeEEEeeeEEEe---EEEEEcCCCCcHHHHHH
Q 001709 666 SISVFPSIDSETIDCCMEHGSGSA-DDEKFIRPEGLSDVFIFCTSD-FTTVFKEVHFRTR---RVRLLGLEGAGKTSLFK 740 (1022)
Q Consensus 666 ~~~vf~~ld~~~~~~~~~~~~~~~-~~~~~i~~~~l~~~~~~~~~~-~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLk 740 (1022)
+++||+++|.++..... +...+ .....|+ |++|.|.|... ..++|+|+||+|+ +||||||||+||||+.+
T Consensus 438 s~rvFel~dr~P~i~~~--G~~~p~~~~G~Ie---F~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTias 512 (716)
T KOG0058|consen 438 SERVFELMDRKPRIPLT--GTLAPDHLQGVIE---FEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIAS 512 (716)
T ss_pred HHHHHHHhccCCCCCCC--CccccccccceEE---EEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHH
Confidence 89999999998821111 11111 2334455 67777776544 5679999999999 99999999999999999
Q ss_pred HHHcCCCCCCCCceEEEEccccc----hhhhcCceEEEcCCCCCCccccccccchHHHHhccccc-hH----------HH
Q 001709 741 AILGQGKLVRTINSGNLDAEADD----QEGIAGGLCYCDSAGVNLQELTMEAARFKDEMWMGIRD-LS----------RK 805 (1022)
Q Consensus 741 lL~GL~~~~~PtsG~I~idg~~~----~~~lr~~IGyV~Q~~~~~~~lTV~~~~~~ENI~~g~~~-~~----------~~ 805 (1022)
+|.+|| +|++|+|++||.++ +..+|++||+|.| ++.++..|| +|||.||..+ .+ ..
T Consensus 513 LL~rfY---~PtsG~IllDG~~i~~~~~~~lr~~Ig~V~Q-EPvLFs~sI-----~eNI~YG~~~~t~e~i~~AAk~ANa 583 (716)
T KOG0058|consen 513 LLLRFY---DPTSGRILLDGVPISDINHKYLRRKIGLVGQ-EPVLFSGSI-----RENIAYGLDNATDEEIEAAAKMANA 583 (716)
T ss_pred HHHHhc---CCCCCeEEECCeehhhcCHHHHHHHeeeeec-cceeecccH-----HHHHhcCCCCCCHHHHHHHHHHhCh
Confidence 999999 99999999998765 6788999999999 666666999 9999999873 11 12
Q ss_pred HHHHH-HhcCCccccCCCcCCch-HHHHHHHHH---------hhhccccCC
Q 001709 806 TDLIV-LVHNLSHKIPRYNYSSA-SGQQQPALS---------LLLNEAKSL 845 (1022)
Q Consensus 806 v~~~L-~v~gL~~~~~r~~~~LS-GqrQRvaIA---------LLLDEPTSa 845 (1022)
.+.+. ..+|+....+++..+|| |||||+||| |||||+|||
T Consensus 584 h~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P~VLILDEATSA 634 (716)
T KOG0058|consen 584 HEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPRVLILDEATSA 634 (716)
T ss_pred HHHHHhCccccccccCCccccccchHHHHHHHHHHHhcCCCEEEEechhhh
Confidence 33444 56678888899999999 999999999 999999998
No 56
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=3e-27 Score=255.02 Aligned_cols=153 Identities=15% Similarity=0.163 Sum_probs=125.8
Q ss_pred CeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc----hhhhcCceEEEcCCCC-CCc
Q 001709 711 FTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD----QEGIAGGLCYCDSAGV-NLQ 782 (1022)
Q Consensus 711 ~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~----~~~lr~~IGyV~Q~~~-~~~ 782 (1022)
..++|+||||+|+ +++|+||||||||||+++|+|++ +|++|+|+++|.++ ...+++.||||||++. .++
T Consensus 17 ~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~---~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~ 93 (274)
T PRK13647 17 GTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIY---LPQRGRVKVMGREVNAENEKWVRSKVGLVFQDPDDQVF 93 (274)
T ss_pred CCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC---CCCceEEEECCEECCCCCHHHHHhhEEEEecChhhhhc
Confidence 4579999999998 99999999999999999999999 99999999998654 3455678999999533 356
Q ss_pred cccccccchHHHHhcccc-------chHHHHHHHH-HhcCCccccCCCcCCch-HHHHHHHHH---------hhhccccC
Q 001709 783 ELTMEAARFKDEMWMGIR-------DLSRKTDLIV-LVHNLSHKIPRYNYSSA-SGQQQPALS---------LLLNEAKS 844 (1022)
Q Consensus 783 ~lTV~~~~~~ENI~~g~~-------~~~~~v~~~L-~v~gL~~~~~r~~~~LS-GqrQRvaIA---------LLLDEPTS 844 (1022)
.+|| .||+.|+.. ...+++.+++ .+ ||.+..++++.+|| |||||++|| |||||||+
T Consensus 94 ~~tv-----~e~l~~~~~~~~~~~~~~~~~~~~~l~~~-~L~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~ 167 (274)
T PRK13647 94 SSTV-----WDDVAFGPVNMGLDKDEVERRVEEALKAV-RMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMA 167 (274)
T ss_pred cCcH-----HHHHHhhHHHcCCCHHHHHHHHHHHHHHC-CCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCc
Confidence 6899 999998643 1245677888 77 99999999999999 999999999 99999999
Q ss_pred CChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEe
Q 001709 845 LGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVIN 886 (1022)
Q Consensus 845 ad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~ 886 (1022)
+ +|...+..+...+.+.. ....++++++
T Consensus 168 ~-------------LD~~~~~~l~~~l~~~~-~~g~tili~t 195 (274)
T PRK13647 168 Y-------------LDPRGQETLMEILDRLH-NQGKTVIVAT 195 (274)
T ss_pred C-------------CCHHHHHHHHHHHHHHH-HCCCEEEEEe
Confidence 7 77777777776665543 3344666665
No 57
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.95 E-value=2.1e-27 Score=244.76 Aligned_cols=153 Identities=16% Similarity=0.260 Sum_probs=123.6
Q ss_pred eeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc----hhhhcCceEEEcCCCCC-Ccc
Q 001709 712 TTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD----QEGIAGGLCYCDSAGVN-LQE 783 (1022)
Q Consensus 712 ~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~----~~~lr~~IGyV~Q~~~~-~~~ 783 (1022)
+++|++|||+++ +++|+||||||||||+|+|+|++ +|++|+|.+++.++ ....++.|+|++|+... ++.
T Consensus 14 ~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~---~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 90 (211)
T cd03225 14 RPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLL---GPTSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFG 90 (211)
T ss_pred eeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCC---CCCCceEEECCEEcccCCHHHHHhhceEEecChhhhcCC
Confidence 679999999998 99999999999999999999999 99999999998654 23456789999995433 667
Q ss_pred ccccccchHHHHhcccc----c---hHHHHHHHH-HhcCCccccCCCcCCch-HHHHHHHHH---------hhhccccCC
Q 001709 784 LTMEAARFKDEMWMGIR----D---LSRKTDLIV-LVHNLSHKIPRYNYSSA-SGQQQPALS---------LLLNEAKSL 845 (1022)
Q Consensus 784 lTV~~~~~~ENI~~g~~----~---~~~~v~~~L-~v~gL~~~~~r~~~~LS-GqrQRvaIA---------LLLDEPTSa 845 (1022)
+|+ +||+.++.. . ..+++++++ .+ +|.+..++++.+|| |||||++|| |||||||++
T Consensus 91 ~t~-----~~~l~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~ 164 (211)
T cd03225 91 PTV-----EEEVAFGLENLGLPEEEIEERVEEALELV-GLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAG 164 (211)
T ss_pred CcH-----HHHHHHHHHHcCCCHHHHHHHHHHHHHHc-CcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence 899 999987532 1 234567788 77 99988999999999 999999999 999999997
Q ss_pred ChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEec
Q 001709 846 GIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINS 887 (1022)
Q Consensus 846 d~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~ 887 (1022)
+|...+..+...+.+ +.....++++++|
T Consensus 165 -------------LD~~~~~~~~~~l~~-~~~~~~tvi~~sH 192 (211)
T cd03225 165 -------------LDPAGRRELLELLKK-LKAEGKTIIIVTH 192 (211)
T ss_pred -------------CCHHHHHHHHHHHHH-HHHcCCEEEEEeC
Confidence 777777777766544 4444345555553
No 58
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=2.4e-27 Score=246.43 Aligned_cols=168 Identities=21% Similarity=0.239 Sum_probs=132.1
Q ss_pred eeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccchhhhcCceEEEcCCCCCCccccccc
Q 001709 712 TTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADDQEGIAGGLCYCDSAGVNLQELTMEA 788 (1022)
Q Consensus 712 ~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~~~~lr~~IGyV~Q~~~~~~~lTV~~ 788 (1022)
+++|++|||+|+ +++|+||||||||||+|+|+|++ +|++|+|.++|.++ ...++.++||+|+...++.+|+
T Consensus 17 ~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~---~~~~G~i~~~g~~~-~~~~~~i~~v~q~~~~~~~~tv-- 90 (220)
T cd03293 17 VTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLE---RPTSGEVLVDGEPV-TGPGPDRGYVFQQDALLPWLTV-- 90 (220)
T ss_pred eEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCC---CCCceEEEECCEEC-ccccCcEEEEecccccccCCCH--
Confidence 579999999999 99999999999999999999999 99999999998765 2346789999995444777999
Q ss_pred cchHHHHhcccc-------chHHHHHHHH-HhcCCccccCCCcCCch-HHHHHHHHH---------hhhccccCCChhHH
Q 001709 789 ARFKDEMWMGIR-------DLSRKTDLIV-LVHNLSHKIPRYNYSSA-SGQQQPALS---------LLLNEAKSLGIPWV 850 (1022)
Q Consensus 789 ~~~~ENI~~g~~-------~~~~~v~~~L-~v~gL~~~~~r~~~~LS-GqrQRvaIA---------LLLDEPTSad~~~v 850 (1022)
+||+.++.. ...+++++++ .+ ||.+..++.+.+|| |||||++|| |||||||++
T Consensus 91 ---~e~l~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~----- 161 (220)
T cd03293 91 ---LDNVALGLELQGVPKAEARERAEELLELV-GLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSA----- 161 (220)
T ss_pred ---HHHHHHHHHHcCCCHHHHHHHHHHHHHHc-CChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEECCCCCC-----
Confidence 999987532 1245677888 77 99999999999999 999999999 999999997
Q ss_pred HHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCCc-ccccCccccccc
Q 001709 851 LAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCPY-VMPGAVSASLSW 902 (1022)
Q Consensus 851 ~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~~-V~~~~~~a~~l~ 902 (1022)
+|...+..+...+.+..+....++++++|-.. +...++..+.+.
T Consensus 162 --------LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~ 206 (220)
T cd03293 162 --------LDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLS 206 (220)
T ss_pred --------CCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEE
Confidence 77777777776665544443446666654443 333445444443
No 59
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.95 E-value=3.2e-27 Score=245.01 Aligned_cols=167 Identities=16% Similarity=0.175 Sum_probs=128.8
Q ss_pred eeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc----hhh---hc-CceEEEcCCCCC
Q 001709 712 TTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD----QEG---IA-GGLCYCDSAGVN 780 (1022)
Q Consensus 712 ~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~----~~~---lr-~~IGyV~Q~~~~ 780 (1022)
.++|+++||+|+ +++|+||||||||||+|+|+|++ +|++|+|.+++.++ ... .+ +.|+||+|+...
T Consensus 18 ~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~---~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~ 94 (221)
T TIGR02211 18 TRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLD---NPTSGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHL 94 (221)
T ss_pred eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC---CCCCcEEEECCEEhhhcCHhHHHHHHHhcEEEEeccccc
Confidence 579999999999 99999999999999999999999 99999999998654 111 23 679999995444
Q ss_pred CccccccccchHHHHhcccc-------chHHHHHHHH-HhcCCccccCCCcCCch-HHHHHHHHH---------hhhccc
Q 001709 781 LQELTMEAARFKDEMWMGIR-------DLSRKTDLIV-LVHNLSHKIPRYNYSSA-SGQQQPALS---------LLLNEA 842 (1022)
Q Consensus 781 ~~~lTV~~~~~~ENI~~g~~-------~~~~~v~~~L-~v~gL~~~~~r~~~~LS-GqrQRvaIA---------LLLDEP 842 (1022)
++.+|+ +||+.++.. ...+++.+++ .+ ||.+..++.+.+|| |||||++|| ||||||
T Consensus 95 ~~~~tv-----~~~l~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEP 168 (221)
T TIGR02211 95 LPDFTA-----LENVAMPLLIGKKSVKEAKERAYEMLEKV-GLEHRINHRPSELSGGERQRVAIARALVNQPSLVLADEP 168 (221)
T ss_pred CCCCcH-----HHHHHHHHHhcCCCHHHHHHHHHHHHHHc-CChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCC
Confidence 777899 999987421 1234577788 77 99999999999999 999999999 999999
Q ss_pred cCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCCcccccCccccc
Q 001709 843 KSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCPYVMPGAVSASL 900 (1022)
Q Consensus 843 TSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~~V~~~~~~a~~ 900 (1022)
|++ +|...+..+...+.+..+....++++++|....+..++.++.
T Consensus 169 t~~-------------LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~d~v~~ 213 (221)
T TIGR02211 169 TGN-------------LDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKLDRVLE 213 (221)
T ss_pred CCc-------------CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEE
Confidence 997 777777777766654433334566666644333333343333
No 60
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.95 E-value=1.9e-27 Score=245.31 Aligned_cols=155 Identities=18% Similarity=0.218 Sum_probs=125.7
Q ss_pred CeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc--hhhhcCceEEEcCCCCCCcccc
Q 001709 711 FTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD--QEGIAGGLCYCDSAGVNLQELT 785 (1022)
Q Consensus 711 ~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~--~~~lr~~IGyV~Q~~~~~~~lT 785 (1022)
.+++|+||||+|+ +++|+||||||||||+|+|+|++ +|++|+|.+++.++ ....++.++|++|+...++.+|
T Consensus 12 ~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~---~~~~G~v~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~t 88 (213)
T cd03301 12 NVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLE---EPTSGRIYIGGRDVTDLPPKDRDIAMVFQNYALYPHMT 88 (213)
T ss_pred CeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC---CCCceEEEECCEECCcCCcccceEEEEecChhhccCCC
Confidence 4679999999999 99999999999999999999999 99999999998665 1223467999999544477789
Q ss_pred ccccchHHHHhcccc-------chHHHHHHHH-HhcCCccccCCCcCCch-HHHHHHHHH---------hhhccccCCCh
Q 001709 786 MEAARFKDEMWMGIR-------DLSRKTDLIV-LVHNLSHKIPRYNYSSA-SGQQQPALS---------LLLNEAKSLGI 847 (1022)
Q Consensus 786 V~~~~~~ENI~~g~~-------~~~~~v~~~L-~v~gL~~~~~r~~~~LS-GqrQRvaIA---------LLLDEPTSad~ 847 (1022)
+ +||+.++.. ...+++++++ .+ ||.+..++++.+|| |||||++|| |||||||++
T Consensus 89 v-----~~~l~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEPt~~-- 160 (213)
T cd03301 89 V-----YDNIAFGLKLRKVPKDEIDERVREVAELL-QIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSN-- 160 (213)
T ss_pred H-----HHHHHHHHHhcCCCHHHHHHHHHHHHHHc-CCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccc--
Confidence 9 999987532 1245677788 77 99999999999999 999999999 999999997
Q ss_pred hHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEec
Q 001709 848 PWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINS 887 (1022)
Q Consensus 848 ~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~ 887 (1022)
+|...+..+...+.+..+....++++++|
T Consensus 161 -----------LD~~~~~~l~~~l~~~~~~~~~tvi~~sH 189 (213)
T cd03301 161 -----------LDAKLRVQMRAELKRLQQRLGTTTIYVTH 189 (213)
T ss_pred -----------CCHHHHHHHHHHHHHHHHHcCCEEEEEeC
Confidence 77777777777665544433456666653
No 61
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=2.8e-27 Score=248.06 Aligned_cols=153 Identities=18% Similarity=0.188 Sum_probs=124.1
Q ss_pred eeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc-h------hhhcCceEEEcCCCCCC
Q 001709 712 TTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD-Q------EGIAGGLCYCDSAGVNL 781 (1022)
Q Consensus 712 ~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~-~------~~lr~~IGyV~Q~~~~~ 781 (1022)
+++|+||||+++ +++|+||||||||||+|+|+|++ +|++|+|.++|.++ . ...++.++|++|+...|
T Consensus 14 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~---~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 90 (241)
T cd03256 14 KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLV---EPTSGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLI 90 (241)
T ss_pred cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCc---CCCCceEEECCEeccccCHhHHHHHHhccEEEcccCccc
Confidence 679999999998 99999999999999999999999 99999999998654 1 23467899999954457
Q ss_pred ccccccccchHHHHhcccc---------------chHHHHHHHH-HhcCCccccCCCcCCch-HHHHHHHHH--------
Q 001709 782 QELTMEAARFKDEMWMGIR---------------DLSRKTDLIV-LVHNLSHKIPRYNYSSA-SGQQQPALS-------- 836 (1022)
Q Consensus 782 ~~lTV~~~~~~ENI~~g~~---------------~~~~~v~~~L-~v~gL~~~~~r~~~~LS-GqrQRvaIA-------- 836 (1022)
+.+|+ +||+.++.. ...+++.+++ .+ +|.+..++++.+|| |||||++||
T Consensus 91 ~~~tv-----~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ 164 (241)
T cd03256 91 ERLSV-----LENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERV-GLLDKAYQRADQLSGGQQQRVAIARALMQQPK 164 (241)
T ss_pred ccCcH-----HHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHc-CChhhhCCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 78999 999976421 1234577778 77 99989999999999 999999999
Q ss_pred -hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEe
Q 001709 837 -LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVIN 886 (1022)
Q Consensus 837 -LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~ 886 (1022)
|||||||++ +|...+..+...+.+..+....++++++
T Consensus 165 llllDEPt~~-------------LD~~~~~~l~~~l~~~~~~~~~tii~~t 202 (241)
T cd03256 165 LILADEPVAS-------------LDPASSRQVMDLLKRINREEGITVIVSL 202 (241)
T ss_pred EEEEeCcccc-------------CCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 999999997 7777777776666544333344566665
No 62
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.95 E-value=1.7e-27 Score=266.18 Aligned_cols=197 Identities=17% Similarity=0.198 Sum_probs=147.2
Q ss_pred eeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc-h-------hhhcCceEEEcCCCCCCcccc
Q 001709 717 EVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD-Q-------EGIAGGLCYCDSAGVNLQELT 785 (1022)
Q Consensus 717 dVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~-~-------~~lr~~IGyV~Q~~~~~~~lT 785 (1022)
||||+++ +++|+||||||||||||+|+|++ +|++|+|.+++.++ . ...++.||||||+...|+++|
T Consensus 16 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~---~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~t 92 (352)
T PRK11144 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLT---RPQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYK 92 (352)
T ss_pred EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC---CCCceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCc
Confidence 8999998 99999999999999999999999 99999999998654 1 234678999999555588899
Q ss_pred ccccchHHHHhccccc-hHHHHHHHH-HhcCCccccCCCcCCch-HHHHHHHHH---------hhhccccCCChhHHHHH
Q 001709 786 MEAARFKDEMWMGIRD-LSRKTDLIV-LVHNLSHKIPRYNYSSA-SGQQQPALS---------LLLNEAKSLGIPWVLAI 853 (1022)
Q Consensus 786 V~~~~~~ENI~~g~~~-~~~~v~~~L-~v~gL~~~~~r~~~~LS-GqrQRvaIA---------LLLDEPTSad~~~v~~I 853 (1022)
| +||+.|+... ..+++++++ .+ ||.+..++++.+|| |||||++|| |||||||++
T Consensus 93 v-----~enl~~~~~~~~~~~~~~~l~~~-gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~llLLDEPts~-------- 158 (352)
T PRK11144 93 V-----RGNLRYGMAKSMVAQFDKIVALL-GIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLAS-------- 158 (352)
T ss_pred H-----HHHHHhhhhhhhHHHHHHHHHHc-CCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCccc--------
Confidence 9 9999987653 356688888 87 99999999999999 999999999 999999997
Q ss_pred hhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCC-cccccCcccccccCCCCCCCCCCCCCceeeecccccccCCCCC
Q 001709 854 TNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCP-YVMPGAVSASLSWGASGGDSDGRSGAQKLLHAPINLVWRPFQR 932 (1022)
Q Consensus 854 ~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~-~V~~~~~~a~~l~~~~~~~~~~~~~~~~i~~~pi~l~~~pf~~ 932 (1022)
+|...+..+...+.+..++...++++++|.. .+...++..+.+.+ +.+.+.+++..++..|.+.+.+.|.+
T Consensus 159 -----LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~---G~i~~~g~~~~i~~~p~~~~~~~~~g 230 (352)
T PRK11144 159 -----LDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQ---GKVKAFGPLEEVWASSAMRPWLPKEE 230 (352)
T ss_pred -----CCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeC---CEEEEecCHHHHHhCcchhhhhcccC
Confidence 7777777777766554443344566665322 23333344333332 22222455666667777666667766
Q ss_pred CCCccc
Q 001709 933 KDNILP 938 (1022)
Q Consensus 933 ~~~~~~ 938 (1022)
..++++
T Consensus 231 ~~n~~~ 236 (352)
T PRK11144 231 QSSILK 236 (352)
T ss_pred cceEEE
Confidence 555544
No 63
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=4e-27 Score=247.06 Aligned_cols=155 Identities=15% Similarity=0.201 Sum_probs=123.7
Q ss_pred eeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc----hh---hh-cCceEEEcCCCCC
Q 001709 712 TTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD----QE---GI-AGGLCYCDSAGVN 780 (1022)
Q Consensus 712 ~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~----~~---~l-r~~IGyV~Q~~~~ 780 (1022)
.++|+++||+|+ +++|+||||||||||+|+|+|++ +|++|+|+++|.++ .. .. ++.|+|+||+...
T Consensus 22 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~---~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~ 98 (233)
T PRK11629 22 TDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLD---TPTSGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHL 98 (233)
T ss_pred eeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCC---CCCceEEEECCEEcCcCCHHHHHHHHhccEEEEecCccc
Confidence 579999999998 99999999999999999999999 99999999998654 11 12 3679999995444
Q ss_pred CccccccccchHHHHhcccc-------chHHHHHHHH-HhcCCccccCCCcCCch-HHHHHHHHH---------hhhccc
Q 001709 781 LQELTMEAARFKDEMWMGIR-------DLSRKTDLIV-LVHNLSHKIPRYNYSSA-SGQQQPALS---------LLLNEA 842 (1022)
Q Consensus 781 ~~~lTV~~~~~~ENI~~g~~-------~~~~~v~~~L-~v~gL~~~~~r~~~~LS-GqrQRvaIA---------LLLDEP 842 (1022)
++.+|+ +||+.++.. ..++++.+++ .+ ||.+..++++.+|| |||||++|| ||||||
T Consensus 99 ~~~~tv-----~e~l~~~~~~~~~~~~~~~~~~~~~l~~~-gl~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEP 172 (233)
T PRK11629 99 LPDFTA-----LENVAMPLLIGKKKPAEINSRALEMLAAV-GLEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEP 172 (233)
T ss_pred CCCCCH-----HHHHHHHHHhcCCCHHHHHHHHHHHHHHc-CCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 777899 999987421 1345677888 77 99999999999999 999999999 999999
Q ss_pred cCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecC
Q 001709 843 KSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSC 888 (1022)
Q Consensus 843 TSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~ 888 (1022)
|++ +|...+..+...+.+..+....++++++|.
T Consensus 173 t~~-------------LD~~~~~~l~~~l~~~~~~~g~tvii~sH~ 205 (233)
T PRK11629 173 TGN-------------LDARNADSIFQLLGELNRLQGTAFLVVTHD 205 (233)
T ss_pred CCC-------------CCHHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 997 777777776665544333334466666533
No 64
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=2.9e-27 Score=255.84 Aligned_cols=165 Identities=15% Similarity=0.190 Sum_probs=131.3
Q ss_pred ceeEEEEecCC-CeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc----hhhhcCce
Q 001709 700 LSDVFIFCTSD-FTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD----QEGIAGGL 771 (1022)
Q Consensus 700 l~~~~~~~~~~-~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~----~~~lr~~I 771 (1022)
++++.+.|... ..++|+||||+|+ +++|+||||||||||+|+|+|++ +|++|+|+++|.++ ...+++.|
T Consensus 7 ~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~---~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13650 7 VKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLL---EAESGQIIIDGDLLTEENVWDIRHKI 83 (279)
T ss_pred EEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCC---CCCCcEEEECCEECCcCcHHHHHhhc
Confidence 34444444322 2469999999998 99999999999999999999999 99999999998654 33567789
Q ss_pred EEEcCCCC-CCccccccccchHHHHhccccc-------hHHHHHHHH-HhcCCccccCCCcCCch-HHHHHHHHH-----
Q 001709 772 CYCDSAGV-NLQELTMEAARFKDEMWMGIRD-------LSRKTDLIV-LVHNLSHKIPRYNYSSA-SGQQQPALS----- 836 (1022)
Q Consensus 772 GyV~Q~~~-~~~~lTV~~~~~~ENI~~g~~~-------~~~~v~~~L-~v~gL~~~~~r~~~~LS-GqrQRvaIA----- 836 (1022)
|||||++. .++.+|| .|||.|+... ..+++.+++ .+ ||.++.++++.+|| |||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv-----~eni~~~~~~~~~~~~~~~~~~~~~l~~~-gL~~~~~~~~~~LSgGq~qrv~lAral~~ 157 (279)
T PRK13650 84 GMVFQNPDNQFVGATV-----EDDVAFGLENKGIPHEEMKERVNEALELV-GMQDFKEREPARLSGGQKQRVAIAGAVAM 157 (279)
T ss_pred eEEEcChHHhcccccH-----HHHHHhhHHhCCCCHHHHHHHHHHHHHHC-CCHhHhhCCcccCCHHHHHHHHHHHHHHc
Confidence 99999543 3677899 9999987431 345678888 87 99999999999999 999999999
Q ss_pred ----hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEe
Q 001709 837 ----LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVIN 886 (1022)
Q Consensus 837 ----LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~ 886 (1022)
|||||||++ +|...+..+...+.+...+...++++++
T Consensus 158 ~p~lLlLDEPt~~-------------LD~~~~~~l~~~l~~l~~~~g~tilivt 198 (279)
T PRK13650 158 RPKIIILDEATSM-------------LDPEGRLELIKTIKGIRDDYQMTVISIT 198 (279)
T ss_pred CCCEEEEECCccc-------------CCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 999999997 7777777777666554443344666665
No 65
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.95 E-value=2.3e-27 Score=244.18 Aligned_cols=154 Identities=16% Similarity=0.160 Sum_probs=126.4
Q ss_pred CeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc--hhhhcCceEEEcCCCCCCcccc
Q 001709 711 FTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD--QEGIAGGLCYCDSAGVNLQELT 785 (1022)
Q Consensus 711 ~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~--~~~lr~~IGyV~Q~~~~~~~lT 785 (1022)
..++|+++||+++ +++|+||||||||||+|+|+|++ +|++|+|.+++.++ ....++.++||+|+...++.+|
T Consensus 12 ~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~---~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~t 88 (208)
T cd03268 12 KKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLI---KPDSGEITFDGKSYQKNIEALRRIGALIEAPGFYPNLT 88 (208)
T ss_pred CeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCc---CCCceEEEECCCcccchHHHHhhEEEecCCCccCccCc
Confidence 4689999999998 99999999999999999999999 99999999998765 2345678999999544577899
Q ss_pred ccccchHHHHhcccc---chHHHHHHHH-HhcCCccccCCCcCCch-HHHHHHHHH---------hhhccccCCChhHHH
Q 001709 786 MEAARFKDEMWMGIR---DLSRKTDLIV-LVHNLSHKIPRYNYSSA-SGQQQPALS---------LLLNEAKSLGIPWVL 851 (1022)
Q Consensus 786 V~~~~~~ENI~~g~~---~~~~~v~~~L-~v~gL~~~~~r~~~~LS-GqrQRvaIA---------LLLDEPTSad~~~v~ 851 (1022)
+ +||+.++.. ...+++++++ .+ +|.+..++++.+|| |||||++|| |||||||++
T Consensus 89 v-----~e~l~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~------ 156 (208)
T cd03268 89 A-----RENLRLLARLLGIRKKRIDEVLDVV-GLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNG------ 156 (208)
T ss_pred H-----HHHHHHHHHhcCCcHHHHHHHHHHc-CCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccc------
Confidence 9 999987642 1345678888 77 99999999999999 999999999 999999997
Q ss_pred HHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEec
Q 001709 852 AITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINS 887 (1022)
Q Consensus 852 ~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~ 887 (1022)
+|...+..+...+.+ +.....++++++|
T Consensus 157 -------LD~~~~~~l~~~l~~-~~~~~~tii~~tH 184 (208)
T cd03268 157 -------LDPDGIKELRELILS-LRDQGITVLISSH 184 (208)
T ss_pred -------CCHHHHHHHHHHHHH-HHHCCCEEEEEcC
Confidence 777777777665544 4444445566653
No 66
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.95 E-value=3.4e-27 Score=248.09 Aligned_cols=154 Identities=16% Similarity=0.152 Sum_probs=123.8
Q ss_pred CeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc-h------hhhcCceEEEcCCCCC
Q 001709 711 FTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD-Q------EGIAGGLCYCDSAGVN 780 (1022)
Q Consensus 711 ~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~-~------~~lr~~IGyV~Q~~~~ 780 (1022)
..++|+||||+++ +++|+||||||||||+|+|+|++ +|++|+|.++|.++ . ..+++.+|||||+...
T Consensus 14 ~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~---~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~ 90 (243)
T TIGR02315 14 GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLV---EPSSGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNL 90 (243)
T ss_pred CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCc---CCCccEEEECCEEhhhCCHHHHHHHHhheEEEcCCCcc
Confidence 4679999999999 99999999999999999999999 99999999998654 1 2346789999995445
Q ss_pred CccccccccchHHHHhcccc---------------chHHHHHHHH-HhcCCccccCCCcCCch-HHHHHHHHH-------
Q 001709 781 LQELTMEAARFKDEMWMGIR---------------DLSRKTDLIV-LVHNLSHKIPRYNYSSA-SGQQQPALS------- 836 (1022)
Q Consensus 781 ~~~lTV~~~~~~ENI~~g~~---------------~~~~~v~~~L-~v~gL~~~~~r~~~~LS-GqrQRvaIA------- 836 (1022)
++.+|+ +||+.++.. ...+++.+++ .+ ||.+..++++.+|| |||||++||
T Consensus 91 ~~~~tv-----~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~LSgG~~qrv~la~al~~~p 164 (243)
T TIGR02315 91 IERLTV-----LENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERV-GLADKAYQRADQLSGGQQQRVAIARALAQQP 164 (243)
T ss_pred cccccH-----HHHHhhcccccccchhhhhccccHHHHHHHHHHHHHc-CcHhhhcCCcccCCHHHHHHHHHHHHHhcCC
Confidence 778999 999986531 1234677788 77 99989999999999 999999999
Q ss_pred --hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEe
Q 001709 837 --LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVIN 886 (1022)
Q Consensus 837 --LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~ 886 (1022)
|||||||++ +|...+..+...+.+..++...++++++
T Consensus 165 ~llllDEPt~~-------------LD~~~~~~l~~~l~~~~~~~~~tiii~t 203 (243)
T TIGR02315 165 DLILADEPIAS-------------LDPKTSKQVMDYLKRINKEDGITVIINL 203 (243)
T ss_pred CEEEEeCCccc-------------CCHHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 999999997 6777777666655443333344556665
No 67
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=3.6e-27 Score=248.25 Aligned_cols=155 Identities=23% Similarity=0.250 Sum_probs=124.1
Q ss_pred CeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc--hhhhcCceEEEcCCCCCCcccc
Q 001709 711 FTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD--QEGIAGGLCYCDSAGVNLQELT 785 (1022)
Q Consensus 711 ~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~--~~~lr~~IGyV~Q~~~~~~~lT 785 (1022)
..++|+||||+++ +++|+||||||||||+|+|+|++ +|++|+|.++|.++ ....++.|+||+|+...++.+|
T Consensus 14 ~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~---~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t 90 (239)
T cd03296 14 DFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLE---RPDSGTILFGGEDATDVPVQERNVGFVFQHYALFRHMT 90 (239)
T ss_pred CEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC---CCCceEEEECCEECCcCCccccceEEEecCCcccCCCC
Confidence 4679999999998 99999999999999999999999 99999999998664 1223567999999544477789
Q ss_pred ccccchHHHHhcccc--------c---hHHHHHHHH-HhcCCccccCCCcCCch-HHHHHHHHH---------hhhcccc
Q 001709 786 MEAARFKDEMWMGIR--------D---LSRKTDLIV-LVHNLSHKIPRYNYSSA-SGQQQPALS---------LLLNEAK 843 (1022)
Q Consensus 786 V~~~~~~ENI~~g~~--------~---~~~~v~~~L-~v~gL~~~~~r~~~~LS-GqrQRvaIA---------LLLDEPT 843 (1022)
+ .||+.++.. . ..+++++++ .+ ||.+..++++.+|| |||||++|| |||||||
T Consensus 91 v-----~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP~ 164 (239)
T cd03296 91 V-----FDNVAFGLRVKPRSERPPEAEIRAKVHELLKLV-QLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPF 164 (239)
T ss_pred H-----HHHHhhhhhhccccccCCHHHHHHHHHHHHHHc-CChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 9 999987532 1 134567778 77 99989999999999 999999999 9999999
Q ss_pred CCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEec
Q 001709 844 SLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINS 887 (1022)
Q Consensus 844 Sad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~ 887 (1022)
++ +|...+..+...+.+..+....++++++|
T Consensus 165 ~~-------------LD~~~~~~l~~~l~~~~~~~~~tvii~sH 195 (239)
T cd03296 165 GA-------------LDAKVRKELRRWLRRLHDELHVTTVFVTH 195 (239)
T ss_pred cc-------------CCHHHHHHHHHHHHHHHHHcCCEEEEEeC
Confidence 97 77777777776554433322446666653
No 68
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.95 E-value=4.2e-27 Score=262.26 Aligned_cols=164 Identities=16% Similarity=0.156 Sum_probs=130.5
Q ss_pred cccccCceeEEEEecCCCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc---hhhh
Q 001709 694 FIRPEGLSDVFIFCTSDFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD---QEGI 767 (1022)
Q Consensus 694 ~i~~~~l~~~~~~~~~~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~---~~~l 767 (1022)
.|+++++++.+ +.+.+|+||||+|+ +++|+||||||||||+|+|+|++ +|++|+|.++|.++ ....
T Consensus 41 ~i~i~nl~k~y-----~~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~---~p~~G~i~i~G~~~~~~~~~~ 112 (340)
T PRK13536 41 AIDLAGVSKSY-----GDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMT---SPDAGKITVLGVPVPARARLA 112 (340)
T ss_pred eEEEEEEEEEE-----CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCC---CCCceEEEECCEECCcchHHH
Confidence 46666666532 45679999999999 99999999999999999999999 99999999998765 3356
Q ss_pred cCceEEEcCCCCCCccccccccchHHHHhcccc----c---hHHHHHHHH-HhcCCccccCCCcCCch-HHHHHHHHH--
Q 001709 768 AGGLCYCDSAGVNLQELTMEAARFKDEMWMGIR----D---LSRKTDLIV-LVHNLSHKIPRYNYSSA-SGQQQPALS-- 836 (1022)
Q Consensus 768 r~~IGyV~Q~~~~~~~lTV~~~~~~ENI~~g~~----~---~~~~v~~~L-~v~gL~~~~~r~~~~LS-GqrQRvaIA-- 836 (1022)
++.|||+||+...++.+|+ .||+.+... . ..+++++++ .+ +|.+..++++.+|| |||||++||
T Consensus 113 ~~~ig~v~q~~~~~~~~tv-----~e~l~~~~~~~~~~~~~~~~~~~~ll~~~-~L~~~~~~~~~~LS~G~kqrv~lA~a 186 (340)
T PRK13536 113 RARIGVVPQFDNLDLEFTV-----RENLLVFGRYFGMSTREIEAVIPSLLEFA-RLESKADARVSDLSGGMKRRLTLARA 186 (340)
T ss_pred hccEEEEeCCccCCCCCcH-----HHHHHHHHHHcCCCHHHHHHHHHHHHHHc-CCchhhCCChhhCCHHHHHHHHHHHH
Confidence 7889999995444788999 999975321 1 234567788 77 99999999999999 999999999
Q ss_pred -------hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEE
Q 001709 837 -------LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVI 885 (1022)
Q Consensus 837 -------LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv 885 (1022)
|||||||++ +|+..+..+...+.+. .....+++++
T Consensus 187 L~~~P~lLiLDEPt~g-------------LD~~~r~~l~~~l~~l-~~~g~tilis 228 (340)
T PRK13536 187 LINDPQLLILDEPTTG-------------LDPHARHLIWERLRSL-LARGKTILLT 228 (340)
T ss_pred HhcCCCEEEEECCCCC-------------CCHHHHHHHHHHHHHH-HhCCCEEEEE
Confidence 999999997 6777777777666544 3333344444
No 69
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=4.2e-27 Score=262.15 Aligned_cols=154 Identities=20% Similarity=0.227 Sum_probs=126.1
Q ss_pred CeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc----hh---hhcCceEEEcCCCCC
Q 001709 711 FTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD----QE---GIAGGLCYCDSAGVN 780 (1022)
Q Consensus 711 ~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~----~~---~lr~~IGyV~Q~~~~ 780 (1022)
.+++|+||||+|+ +++|+||||||||||+|+|+|++ +|++|+|.++|.++ .. ..+++||||||+...
T Consensus 17 ~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~---~p~~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l 93 (343)
T PRK11153 17 TIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLE---RPTSGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNL 93 (343)
T ss_pred ceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC---CCCceEEEECCEECCcCCHHHHHHHhcCEEEEeCCCcc
Confidence 4679999999999 99999999999999999999999 99999999998654 11 246789999995444
Q ss_pred CccccccccchHHHHhcccc-------chHHHHHHHH-HhcCCccccCCCcCCch-HHHHHHHHH---------hhhccc
Q 001709 781 LQELTMEAARFKDEMWMGIR-------DLSRKTDLIV-LVHNLSHKIPRYNYSSA-SGQQQPALS---------LLLNEA 842 (1022)
Q Consensus 781 ~~~lTV~~~~~~ENI~~g~~-------~~~~~v~~~L-~v~gL~~~~~r~~~~LS-GqrQRvaIA---------LLLDEP 842 (1022)
++.+|| +||+.++.. ...+++.+++ .+ ||.+..++++.+|| |||||++|| ||||||
T Consensus 94 ~~~~tv-----~eni~~~~~~~~~~~~~~~~~~~~~l~~~-gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~iLlLDEP 167 (343)
T PRK11153 94 LSSRTV-----FDNVALPLELAGTPKAEIKARVTELLELV-GLSDKADRYPAQLSGGQKQRVAIARALASNPKVLLCDEA 167 (343)
T ss_pred CCCCcH-----HHHHHHHHHHcCCCHHHHHHHHHHHHHHc-CCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 778999 999987642 1245677888 77 99999999999999 999999999 999999
Q ss_pred cCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEe
Q 001709 843 KSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVIN 886 (1022)
Q Consensus 843 TSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~ 886 (1022)
|++ +|...+..+...+.+..++...++++++
T Consensus 168 ts~-------------LD~~~~~~l~~~L~~l~~~~g~tiilvt 198 (343)
T PRK11153 168 TSA-------------LDPATTRSILELLKDINRELGLTIVLIT 198 (343)
T ss_pred ccc-------------CCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 997 7777777777666544343344566665
No 70
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.95 E-value=2.5e-27 Score=258.99 Aligned_cols=154 Identities=18% Similarity=0.197 Sum_probs=125.3
Q ss_pred CCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc---hhhhcCceEEEcCCCCCCcc
Q 001709 710 DFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD---QEGIAGGLCYCDSAGVNLQE 783 (1022)
Q Consensus 710 ~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~---~~~lr~~IGyV~Q~~~~~~~ 783 (1022)
+.+++|+||||+|+ +++|+||||||||||+|+|+|++ +|++|+|.++|.++ ....++.|||++|+...++.
T Consensus 4 ~~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~---~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~ 80 (302)
T TIGR01188 4 GDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLL---RPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDED 80 (302)
T ss_pred CCeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC---CCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCC
Confidence 34679999999998 99999999999999999999999 99999999998765 33557789999995555888
Q ss_pred ccccccchHHHHhcccc-------chHHHHHHHH-HhcCCccccCCCcCCch-HHHHHHHHH---------hhhccccCC
Q 001709 784 LTMEAARFKDEMWMGIR-------DLSRKTDLIV-LVHNLSHKIPRYNYSSA-SGQQQPALS---------LLLNEAKSL 845 (1022)
Q Consensus 784 lTV~~~~~~ENI~~g~~-------~~~~~v~~~L-~v~gL~~~~~r~~~~LS-GqrQRvaIA---------LLLDEPTSa 845 (1022)
+|+ +||+.+... ...+++++++ .+ ||.+..++++.+|| |||||++|| |||||||++
T Consensus 81 ~tv-----~e~l~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~g 154 (302)
T TIGR01188 81 LTG-----RENLEMMGRLYGLPKDEAEERAEELLELF-ELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTG 154 (302)
T ss_pred CcH-----HHHHHHHHHHcCCCHHHHHHHHHHHHHHc-CChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcC
Confidence 999 999987432 1245678888 87 99999999999999 999999999 999999997
Q ss_pred ChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEe
Q 001709 846 GIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVIN 886 (1022)
Q Consensus 846 d~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~ 886 (1022)
+|+..+..+...+. .+.....++++++
T Consensus 155 -------------LD~~~~~~l~~~l~-~~~~~g~tvi~~s 181 (302)
T TIGR01188 155 -------------LDPRTRRAIWDYIR-ALKEEGVTILLTT 181 (302)
T ss_pred -------------CCHHHHHHHHHHHH-HHHhCCCEEEEEC
Confidence 67777776666554 3444433454544
No 71
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=1e-26 Score=248.49 Aligned_cols=153 Identities=16% Similarity=0.193 Sum_probs=124.7
Q ss_pred CeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccchhhhcCceEEEcCCCCCCcccccc
Q 001709 711 FTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADDQEGIAGGLCYCDSAGVNLQELTME 787 (1022)
Q Consensus 711 ~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~~~~lr~~IGyV~Q~~~~~~~lTV~ 787 (1022)
..++|+||||+|+ +++|+||||||||||+|+|+|++ +|++|+|.++|.++. ..+..+||++|+...++.+|+
T Consensus 13 ~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~---~p~~G~i~~~g~~~~-~~~~~~~~v~q~~~~~~~~tv- 87 (255)
T PRK11248 13 GKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFV---PYQHGSITLDGKPVE-GPGAERGVVFQNEGLLPWRNV- 87 (255)
T ss_pred CeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCC---CCCCcEEEECCEECC-CCCCcEEEEeCCCccCCCCcH-
Confidence 4679999999998 99999999999999999999999 999999999987651 123568999995444777899
Q ss_pred ccchHHHHhcccc----c---hHHHHHHHH-HhcCCccccCCCcCCch-HHHHHHHHH---------hhhccccCCChhH
Q 001709 788 AARFKDEMWMGIR----D---LSRKTDLIV-LVHNLSHKIPRYNYSSA-SGQQQPALS---------LLLNEAKSLGIPW 849 (1022)
Q Consensus 788 ~~~~~ENI~~g~~----~---~~~~v~~~L-~v~gL~~~~~r~~~~LS-GqrQRvaIA---------LLLDEPTSad~~~ 849 (1022)
.||+.++.. . ..+++.+++ .+ ||.+..++++.+|| |||||++|| |||||||++
T Consensus 88 ----~e~l~~~~~~~~~~~~~~~~~~~~~l~~~-gl~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~---- 158 (255)
T PRK11248 88 ----QDNVAFGLQLAGVEKMQRLEIAHQMLKKV-GLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGA---- 158 (255)
T ss_pred ----HHHHHhHHHHcCCCHHHHHHHHHHHHHHc-CChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcc----
Confidence 999987532 1 235677888 87 99988999999999 999999999 999999996
Q ss_pred HHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEe
Q 001709 850 VLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVIN 886 (1022)
Q Consensus 850 v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~ 886 (1022)
+|...+..+...+.+..+....++++++
T Consensus 159 ---------LD~~~~~~l~~~L~~~~~~~g~tviivs 186 (255)
T PRK11248 159 ---------LDAFTREQMQTLLLKLWQETGKQVLLIT 186 (255)
T ss_pred ---------CCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 7777777777766554444444566665
No 72
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.95 E-value=4.3e-28 Score=250.67 Aligned_cols=182 Identities=19% Similarity=0.143 Sum_probs=143.1
Q ss_pred CeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc---hhhhcCceEEEcCCCCCCccc
Q 001709 711 FTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD---QEGIAGGLCYCDSAGVNLQEL 784 (1022)
Q Consensus 711 ~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~---~~~lr~~IGyV~Q~~~~~~~l 784 (1022)
...+++||||+++ ++||+|||||||||+||+|++|+ .|++|.|++|+-+. +...|++||.++....++..|
T Consensus 14 ~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL---~P~~G~v~idg~d~~~~p~~vrr~IGVl~~e~glY~Rl 90 (245)
T COG4555 14 KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLL---IPDSGKVTIDGVDTVRDPSFVRRKIGVLFGERGLYARL 90 (245)
T ss_pred HHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhc---cCCCceEEEeecccccChHHHhhhcceecCCcChhhhh
Confidence 4559999999999 99999999999999999999999 99999999998665 678899999999633348889
Q ss_pred cccccchHHHHhcccc-------chHHHHHHHH-HhcCCccccCCCcCCch-HHHHHHHHH---------hhhccccCC-
Q 001709 785 TMEAARFKDEMWMGIR-------DLSRKTDLIV-LVHNLSHKIPRYNYSSA-SGQQQPALS---------LLLNEAKSL- 845 (1022)
Q Consensus 785 TV~~~~~~ENI~~g~~-------~~~~~v~~~L-~v~gL~~~~~r~~~~LS-GqrQRvaIA---------LLLDEPTSa- 845 (1022)
|+ +|||.|..+ +.+++++++. .+ +|.+.++++...|| ||||||+|| ++||||||+
T Consensus 91 T~-----rEnl~~Fa~L~~l~~~~~kari~~l~k~l-~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGL 164 (245)
T COG4555 91 TA-----RENLKYFARLNGLSRKEIKARIAELSKRL-QLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGL 164 (245)
T ss_pred hH-----HHHHHHHHHHhhhhhhHHHHHHHHHHHHh-ChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEcCCCCCc
Confidence 99 999998654 2577888888 88 99999999999999 999999999 999999997
Q ss_pred ChhHHHHHhhhhcccHHHHHH--HHHHHHHHHHhCCCeEEEEecCCcccccCcccccc
Q 001709 846 GIPWVLAITNKFSVSAHQQRA--AIDAVMQAYQASPSTTEVINSCPYVMPGAVSASLS 901 (1022)
Q Consensus 846 d~~~v~~I~~~~~ld~~~~~~--~i~~ll~~~~~t~~~~vVv~~~~~V~~~~~~a~~l 901 (1022)
|+...+.+.+.+.-...+.+. ...++|++.++.+|.+++++.++.|..+.-+++..
T Consensus 165 Di~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l~~ 222 (245)
T COG4555 165 DIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDA 222 (245)
T ss_pred cHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHHHHH
Confidence 333322222222100000111 12677788888888888888888888775555543
No 73
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=4.9e-27 Score=255.17 Aligned_cols=168 Identities=13% Similarity=0.157 Sum_probs=130.9
Q ss_pred eeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc-h-----hhhcCceEEEcCCCCC-C
Q 001709 712 TTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD-Q-----EGIAGGLCYCDSAGVN-L 781 (1022)
Q Consensus 712 ~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~-~-----~~lr~~IGyV~Q~~~~-~ 781 (1022)
+++|+||||+|. +++|+||||||||||+++|+|++ +|++|+|+++|.++ . ..+++.||||||++.. +
T Consensus 20 ~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~---~p~~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~ 96 (287)
T PRK13637 20 KKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLL---KPTSGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQL 96 (287)
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC---CCCccEEEECCEECCCcCccHHHHhhceEEEecCchhcc
Confidence 479999999999 99999999999999999999999 99999999998664 1 2457889999995433 5
Q ss_pred ccccccccchHHHHhcccc----c---hHHHHHHHH-HhcCCc--cccCCCcCCch-HHHHHHHHH---------hhhcc
Q 001709 782 QELTMEAARFKDEMWMGIR----D---LSRKTDLIV-LVHNLS--HKIPRYNYSSA-SGQQQPALS---------LLLNE 841 (1022)
Q Consensus 782 ~~lTV~~~~~~ENI~~g~~----~---~~~~v~~~L-~v~gL~--~~~~r~~~~LS-GqrQRvaIA---------LLLDE 841 (1022)
+.+|| +|||.|+.. . ..+++++++ .+ ||. +..++++.+|| |||||++|| |||||
T Consensus 97 ~~~tv-----~e~l~~~~~~~~~~~~~~~~~~~~~l~~~-gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~~P~llllDE 170 (287)
T PRK13637 97 FEETI-----EKDIAFGPINLGLSEEEIENRVKRAMNIV-GLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDE 170 (287)
T ss_pred ccccH-----HHHHHhHHHHCCCCHHHHHHHHHHHHHHc-CCCchhhccCCcccCCHHHHHHHHHHHHHHcCCCEEEEEC
Confidence 56899 999988643 1 335678888 77 997 78899999999 999999999 99999
Q ss_pred ccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCCcccccCcccccccCCCCC
Q 001709 842 AKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCPYVMPGAVSASLSWGASGG 907 (1022)
Q Consensus 842 PTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~~V~~~~~~a~~l~~~~~~ 907 (1022)
||++ +|...+..+...+.+..+....++++++ |..+.+..+++++..
T Consensus 171 Pt~g-------------LD~~~~~~l~~~l~~l~~~~g~tvi~vt------Hd~~~~~~~~drv~~ 217 (287)
T PRK13637 171 PTAG-------------LDPKGRDEILNKIKELHKEYNMTIILVS------HSMEDVAKLADRIIV 217 (287)
T ss_pred CccC-------------CCHHHHHHHHHHHHHHHHhcCCEEEEEe------CCHHHHHHhCCEEEE
Confidence 9997 7777777777666544333234555555 444444444555443
No 74
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.95 E-value=5.7e-27 Score=242.18 Aligned_cols=167 Identities=23% Similarity=0.185 Sum_probs=128.7
Q ss_pred CeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccchhhhcCceEEEcCCCCC--Ccccc
Q 001709 711 FTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADDQEGIAGGLCYCDSAGVN--LQELT 785 (1022)
Q Consensus 711 ~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~~~~lr~~IGyV~Q~~~~--~~~lT 785 (1022)
..++|++|||+|+ +++|+||||||||||+|+|+|++ +|++|+|.+++.++ ...+++|+||+|+... ++.+|
T Consensus 11 ~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~---~p~~G~i~~~g~~~-~~~~~~i~~v~q~~~~~~~~~~t 86 (213)
T cd03235 11 GHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLL---KPTSGSIRVFGKPL-EKERKRIGYVPQRRSIDRDFPIS 86 (213)
T ss_pred CEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCC---CCCCCEEEECCccH-HHHHhheEEeccccccccCCCCc
Confidence 4679999999998 99999999999999999999999 99999999998765 2456789999995433 24479
Q ss_pred ccccchHHHHhcccc-----------chHHHHHHHH-HhcCCccccCCCcCCch-HHHHHHHHH---------hhhcccc
Q 001709 786 MEAARFKDEMWMGIR-----------DLSRKTDLIV-LVHNLSHKIPRYNYSSA-SGQQQPALS---------LLLNEAK 843 (1022)
Q Consensus 786 V~~~~~~ENI~~g~~-----------~~~~~v~~~L-~v~gL~~~~~r~~~~LS-GqrQRvaIA---------LLLDEPT 843 (1022)
+ +||+.++.. ...+++++++ .+ +|.+..++++.+|| |||||++|| |||||||
T Consensus 87 v-----~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt 160 (213)
T cd03235 87 V-----RDVVLMGLYGHKGLFRRLSKADKAKVDEALERV-GLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPF 160 (213)
T ss_pred H-----HHHHHhccccccccccCCCHHHHHHHHHHHHHc-CCHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 9 999987532 1234677788 77 99988999999999 999999999 9999999
Q ss_pred CCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCCc-ccccCcccccc
Q 001709 844 SLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCPY-VMPGAVSASLS 901 (1022)
Q Consensus 844 Sad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~~-V~~~~~~a~~l 901 (1022)
++ +|...+..+...+.+. .....++++++|... +...++..+.+
T Consensus 161 ~~-------------LD~~~~~~l~~~l~~~-~~~~~tvi~~sH~~~~~~~~~d~i~~l 205 (213)
T cd03235 161 AG-------------VDPKTQEDIYELLREL-RREGMTILVVTHDLGLVLEYFDRVLLL 205 (213)
T ss_pred cc-------------CCHHHHHHHHHHHHHH-HhcCCEEEEEeCCHHHHHHhcCEEEEE
Confidence 97 7777777777666544 334445555653332 22334444444
No 75
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.95 E-value=5.5e-27 Score=241.75 Aligned_cols=155 Identities=17% Similarity=0.192 Sum_probs=125.4
Q ss_pred eeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc-h------hhhcCceEEEcCCCCCC
Q 001709 712 TTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD-Q------EGIAGGLCYCDSAGVNL 781 (1022)
Q Consensus 712 ~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~-~------~~lr~~IGyV~Q~~~~~ 781 (1022)
+++|+|+||+++ +++|+||||||||||+++|+|++ +|++|+|.+++.++ . ...++.|+||+|+...+
T Consensus 14 ~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~---~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~ 90 (214)
T cd03292 14 TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEE---LPTSGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLL 90 (214)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC---CCCceEEEECCEEcccCCHHHHHHHHHheEEEecCchhc
Confidence 579999999998 99999999999999999999999 99999999998654 1 23567899999954448
Q ss_pred ccccccccchHHHHhcccc-------chHHHHHHHH-HhcCCccccCCCcCCch-HHHHHHHHH---------hhhcccc
Q 001709 782 QELTMEAARFKDEMWMGIR-------DLSRKTDLIV-LVHNLSHKIPRYNYSSA-SGQQQPALS---------LLLNEAK 843 (1022)
Q Consensus 782 ~~lTV~~~~~~ENI~~g~~-------~~~~~v~~~L-~v~gL~~~~~r~~~~LS-GqrQRvaIA---------LLLDEPT 843 (1022)
+.+|+ +||+.++.. ...+++.+++ .+ ||.+..++++.+|| |||||++|| |||||||
T Consensus 91 ~~~t~-----~~~l~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt 164 (214)
T cd03292 91 PDRNV-----YENVAFALEVTGVPPREIRKRVPAALELV-GLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPT 164 (214)
T ss_pred cCCcH-----HHHHHHHHHHcCCCHHHHHHHHHHHHHHc-CCHHHhhCChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 88999 999987632 1234677888 77 99999999999999 999999999 9999999
Q ss_pred CCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCC
Q 001709 844 SLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCP 889 (1022)
Q Consensus 844 Sad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~ 889 (1022)
++ +|...+..+...+.+ +.....++++++|..
T Consensus 165 ~~-------------LD~~~~~~~~~~l~~-~~~~~~tiiivtH~~ 196 (214)
T cd03292 165 GN-------------LDPDTTWEIMNLLKK-INKAGTTVVVATHAK 196 (214)
T ss_pred Cc-------------CCHHHHHHHHHHHHH-HHHcCCEEEEEeCCH
Confidence 97 777777777666644 444444666665433
No 76
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.94 E-value=5.1e-27 Score=243.28 Aligned_cols=153 Identities=20% Similarity=0.318 Sum_probs=123.5
Q ss_pred eeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc---hhhhcCceEEEcCCCCCCcccc
Q 001709 712 TTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD---QEGIAGGLCYCDSAGVNLQELT 785 (1022)
Q Consensus 712 ~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~---~~~lr~~IGyV~Q~~~~~~~lT 785 (1022)
.++|+||||+++ +++|+||||||||||+|+|+|++ +|++|+|.++|.++ ....++.++||+|+...++.+|
T Consensus 15 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~---~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~t 91 (220)
T cd03263 15 KPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGEL---RPTSGTAYINGYSIRTDRKAARQSLGYCPQFDALFDELT 91 (220)
T ss_pred ceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC---CCCCcEEEECCEecccchHHHhhhEEEecCcCCccccCC
Confidence 679999999999 99999999999999999999999 99999999998665 2345678999999544477899
Q ss_pred ccccchHHHHhcccc----c---hHHHHHHHH-HhcCCccccCCCcCCch-HHHHHHHHH---------hhhccccCCCh
Q 001709 786 MEAARFKDEMWMGIR----D---LSRKTDLIV-LVHNLSHKIPRYNYSSA-SGQQQPALS---------LLLNEAKSLGI 847 (1022)
Q Consensus 786 V~~~~~~ENI~~g~~----~---~~~~v~~~L-~v~gL~~~~~r~~~~LS-GqrQRvaIA---------LLLDEPTSad~ 847 (1022)
+ +||+.+... . ..+++++++ .+ +|.+..++++.+|| |||||++|| |||||||++
T Consensus 92 v-----~~~l~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~-- 163 (220)
T cd03263 92 V-----REHLRFYARLKGLPKSEIKEEVELLLRVL-GLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSG-- 163 (220)
T ss_pred H-----HHHHHHHHHHcCCCHHHHHHHHHHHHHHc-CCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEECCCCCC--
Confidence 9 999987532 1 235677788 77 99988999999999 999999999 999999997
Q ss_pred hHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecC
Q 001709 848 PWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSC 888 (1022)
Q Consensus 848 ~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~ 888 (1022)
+|...+..+...+.+ +.. ..++++++|.
T Consensus 164 -----------LD~~~~~~l~~~l~~-~~~-~~tii~~sH~ 191 (220)
T cd03263 164 -----------LDPASRRAIWDLILE-VRK-GRSIILTTHS 191 (220)
T ss_pred -----------CCHHHHHHHHHHHHH-Hhc-CCEEEEEcCC
Confidence 677777766665544 333 2455555533
No 77
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.94 E-value=1e-26 Score=244.42 Aligned_cols=169 Identities=14% Similarity=0.107 Sum_probs=130.0
Q ss_pred CeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc---hhhhcCceEEEcCCCCCCccc
Q 001709 711 FTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD---QEGIAGGLCYCDSAGVNLQEL 784 (1022)
Q Consensus 711 ~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~---~~~lr~~IGyV~Q~~~~~~~l 784 (1022)
.+++|++|||+|+ +++|+||||||||||+++|+|++ +|++|+|.++|.++ ....++.++|++|+...++.+
T Consensus 13 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~---~p~~G~i~~~g~~i~~~~~~~~~~i~~~~q~~~~~~~~ 89 (236)
T TIGR03864 13 ARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLY---VAQEGQISVAGHDLRRAPRAALARLGVVFQQPTLDLDL 89 (236)
T ss_pred CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCc---CCCceEEEECCEEcccCChhhhhhEEEeCCCCCCcccC
Confidence 4679999999998 99999999999999999999999 99999999998654 223346899999954446789
Q ss_pred cccccchHHHHhcccc--c-----hHHHHHHHH-HhcCCccccCCCcCCch-HHHHHHHHH---------hhhccccCCC
Q 001709 785 TMEAARFKDEMWMGIR--D-----LSRKTDLIV-LVHNLSHKIPRYNYSSA-SGQQQPALS---------LLLNEAKSLG 846 (1022)
Q Consensus 785 TV~~~~~~ENI~~g~~--~-----~~~~v~~~L-~v~gL~~~~~r~~~~LS-GqrQRvaIA---------LLLDEPTSad 846 (1022)
|+ +||+.++.. . ..+.+.+++ .+ ||.+..++++.+|| |||||++|| |||||||++
T Consensus 90 t~-----~~~l~~~~~~~~~~~~~~~~~~~~~l~~~-gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~- 162 (236)
T TIGR03864 90 SV-----RQNLRYHAALHGLSRAEARERIAALLARL-GLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVG- 162 (236)
T ss_pred cH-----HHHHHHHHHhcCCCHHHHHHHHHHHHHHc-CChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccC-
Confidence 99 999986532 1 234567778 77 99988999999999 999999999 999999997
Q ss_pred hhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCCcccccCcccccc
Q 001709 847 IPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCPYVMPGAVSASLS 901 (1022)
Q Consensus 847 ~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~~V~~~~~~a~~l 901 (1022)
+|...+..+...+.+..+....++++++|....+..++..+++
T Consensus 163 ------------LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l 205 (236)
T TIGR03864 163 ------------LDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEADDRLVVL 205 (236)
T ss_pred ------------CCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhhCCEEEEE
Confidence 7777777777666544333344666665333333334444443
No 78
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=6.2e-27 Score=241.39 Aligned_cols=154 Identities=18% Similarity=0.157 Sum_probs=125.2
Q ss_pred CeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccchhhhcCceEEEcCCCCCCcccccc
Q 001709 711 FTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADDQEGIAGGLCYCDSAGVNLQELTME 787 (1022)
Q Consensus 711 ~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~~~~lr~~IGyV~Q~~~~~~~lTV~ 787 (1022)
.+.+|++|||+++ +++|+||||||||||+++|+|++ +|++|+|.+++.++....++.++|++|+...++.+|+
T Consensus 12 ~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~---~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv- 87 (210)
T cd03269 12 RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGII---LPDSGEVLFDGKPLDIAARNRIGYLPEERGLYPKMKV- 87 (210)
T ss_pred CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC---CCCceEEEECCCchhHHHHccEEEeccCCcCCcCCcH-
Confidence 4679999999998 99999999999999999999999 9999999999877622456789999995444777899
Q ss_pred ccchHHHHhcccc-------chHHHHHHHH-HhcCCccccCCCcCCch-HHHHHHHHH---------hhhccccCCChhH
Q 001709 788 AARFKDEMWMGIR-------DLSRKTDLIV-LVHNLSHKIPRYNYSSA-SGQQQPALS---------LLLNEAKSLGIPW 849 (1022)
Q Consensus 788 ~~~~~ENI~~g~~-------~~~~~v~~~L-~v~gL~~~~~r~~~~LS-GqrQRvaIA---------LLLDEPTSad~~~ 849 (1022)
+||+.+... ...+.+.+++ .+ ||.+..++++.+|| |||||++|| |||||||++
T Consensus 88 ----~e~l~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~lllDEP~~~---- 158 (210)
T cd03269 88 ----IDQLVYLAQLKGLKKEEARRRIDEWLERL-ELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSG---- 158 (210)
T ss_pred ----HHHHHHHHHHcCCChHHHHHHHHHHHHHc-CChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcC----
Confidence 999977532 1245677788 77 99988999999999 999999999 999999996
Q ss_pred HHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEec
Q 001709 850 VLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINS 887 (1022)
Q Consensus 850 v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~ 887 (1022)
+|...+..+...+. .+.....++++++|
T Consensus 159 ---------LD~~~~~~~~~~l~-~~~~~~~tii~~sH 186 (210)
T cd03269 159 ---------LDPVNVELLKDVIR-ELARAGKTVILSTH 186 (210)
T ss_pred ---------CCHHHHHHHHHHHH-HHHHCCCEEEEECC
Confidence 77777777666554 44444445666653
No 79
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.94 E-value=5.6e-27 Score=242.71 Aligned_cols=153 Identities=18% Similarity=0.163 Sum_probs=125.3
Q ss_pred eEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc---hhhhcCceEEEcCCCCCCccccc
Q 001709 713 TVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD---QEGIAGGLCYCDSAGVNLQELTM 786 (1022)
Q Consensus 713 ~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~---~~~lr~~IGyV~Q~~~~~~~lTV 786 (1022)
++|+++||+++ +++|+|+||||||||+|+|+|++ +|++|+|.+++.++ ....++.++|++|+...++.+|+
T Consensus 19 ~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~---~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 95 (218)
T cd03266 19 QAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLL---EPDAGFATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTA 95 (218)
T ss_pred eeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCc---CCCCceEEECCEEcccCHHHHHhhEEEecCCcccCcCCCH
Confidence 79999999998 99999999999999999999999 99999999998664 33557789999995544777899
Q ss_pred cccchHHHHhcccc-------chHHHHHHHH-HhcCCccccCCCcCCch-HHHHHHHHH---------hhhccccCCChh
Q 001709 787 EAARFKDEMWMGIR-------DLSRKTDLIV-LVHNLSHKIPRYNYSSA-SGQQQPALS---------LLLNEAKSLGIP 848 (1022)
Q Consensus 787 ~~~~~~ENI~~g~~-------~~~~~v~~~L-~v~gL~~~~~r~~~~LS-GqrQRvaIA---------LLLDEPTSad~~ 848 (1022)
+||+.+... ...+++.+++ .+ ||.+..++++.+|| |||||++|| |||||||++
T Consensus 96 -----~e~l~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~--- 166 (218)
T cd03266 96 -----RENLEYFAGLYGLKGDELTARLEELADRL-GMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTG--- 166 (218)
T ss_pred -----HHHHHHHHHHcCCCHHHHHHHHHHHHHHc-CCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcC---
Confidence 999976432 1345678888 87 99999999999999 999999999 999999997
Q ss_pred HHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecC
Q 001709 849 WVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSC 888 (1022)
Q Consensus 849 ~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~ 888 (1022)
+|...+..+...+.+ +.....++++++|.
T Consensus 167 ----------LD~~~~~~l~~~l~~-~~~~~~tii~~tH~ 195 (218)
T cd03266 167 ----------LDVMATRALREFIRQ-LRALGKCILFSTHI 195 (218)
T ss_pred ----------CCHHHHHHHHHHHHH-HHHCCCEEEEEeCC
Confidence 777777776665544 44444466666533
No 80
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.94 E-value=9.9e-27 Score=238.56 Aligned_cols=157 Identities=15% Similarity=0.213 Sum_probs=125.8
Q ss_pred CeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc----h----hhhcCceEEEcCCCC
Q 001709 711 FTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD----Q----EGIAGGLCYCDSAGV 779 (1022)
Q Consensus 711 ~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~----~----~~lr~~IGyV~Q~~~ 779 (1022)
++++|+||||+++ +++|+||||||||||+|+|+|++ +|++|+|.+++.++ . ...++.++|++|+..
T Consensus 10 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~---~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~ 86 (206)
T TIGR03608 10 DKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLE---KFDSGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFA 86 (206)
T ss_pred CEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCC---CCCCeEEEECCEEccccchhhHHHHHHhCeeEEecchh
Confidence 4679999999998 99999999999999999999999 99999999998652 1 134678999999544
Q ss_pred CCccccccccchHHHHhcccc-------chHHHHHHHH-HhcCCccccCCCcCCch-HHHHHHHHH---------hhhcc
Q 001709 780 NLQELTMEAARFKDEMWMGIR-------DLSRKTDLIV-LVHNLSHKIPRYNYSSA-SGQQQPALS---------LLLNE 841 (1022)
Q Consensus 780 ~~~~lTV~~~~~~ENI~~g~~-------~~~~~v~~~L-~v~gL~~~~~r~~~~LS-GqrQRvaIA---------LLLDE 841 (1022)
.++.+|+ +||+.++.. ...+++.+++ .+ ||.+..++++.+|| |||||++|| |||||
T Consensus 87 ~~~~~t~-----~e~~~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~lS~G~~qr~~laral~~~p~llllDE 160 (206)
T TIGR03608 87 LIENETV-----EENLDLGLKYKKLSKKEKREKKKEALEKV-GLNLKLKQKIYELSGGEQQRVALARAILKDPPLILADE 160 (206)
T ss_pred hccCCcH-----HHHHHHHHHhcCCCHHHHHHHHHHHHHHc-CchhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 4777999 999987532 1245677788 77 99999999999999 999999999 99999
Q ss_pred ccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCCc
Q 001709 842 AKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCPY 890 (1022)
Q Consensus 842 PTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~~ 890 (1022)
||++ +|...+..+...+.+ +.....++++++|...
T Consensus 161 Pt~~-------------LD~~~~~~l~~~l~~-~~~~~~tii~~sh~~~ 195 (206)
T TIGR03608 161 PTGS-------------LDPKNRDEVLDLLLE-LNDEGKTIIIVTHDPE 195 (206)
T ss_pred CcCC-------------CCHHHHHHHHHHHHH-HHhcCCEEEEEeCCHH
Confidence 9997 777777777666543 4434445666654443
No 81
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.94 E-value=7e-27 Score=244.72 Aligned_cols=153 Identities=20% Similarity=0.225 Sum_probs=123.4
Q ss_pred CeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc----hhh-hcCceEEEcCCCCCCc
Q 001709 711 FTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD----QEG-IAGGLCYCDSAGVNLQ 782 (1022)
Q Consensus 711 ~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~----~~~-lr~~IGyV~Q~~~~~~ 782 (1022)
..++|++|||+++ +++|+||||||||||+++|+|++ +|++|+|.+++.++ ... .+..|+|+||+...++
T Consensus 12 ~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~---~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~ 88 (236)
T cd03219 12 GLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFL---RPTSGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFP 88 (236)
T ss_pred CEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCC---CCCCceEEECCEECCCCCHHHHHhcCEEEEeccccccc
Confidence 4679999999998 99999999999999999999999 99999999998654 122 2467999999544578
Q ss_pred cccccccchHHHHhccccc-----------------hHHHHHHHH-HhcCCccccCCCcCCch-HHHHHHHHH-------
Q 001709 783 ELTMEAARFKDEMWMGIRD-----------------LSRKTDLIV-LVHNLSHKIPRYNYSSA-SGQQQPALS------- 836 (1022)
Q Consensus 783 ~lTV~~~~~~ENI~~g~~~-----------------~~~~v~~~L-~v~gL~~~~~r~~~~LS-GqrQRvaIA------- 836 (1022)
.+|| +||+.++... ..+++++++ .+ ||.+..++++.+|| |||||++||
T Consensus 89 ~~tv-----~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~LSgG~~qrv~la~al~~~p 162 (236)
T cd03219 89 ELTV-----LENVMVAAQARTGSGLLLARARREEREARERAEELLERV-GLADLADRPAGELSYGQQRRLEIARALATDP 162 (236)
T ss_pred CCCH-----HHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHc-CccchhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence 8899 9999875321 234577788 77 99999999999999 999999999
Q ss_pred --hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEe
Q 001709 837 --LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVIN 886 (1022)
Q Consensus 837 --LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~ 886 (1022)
|||||||++ +|...+..+...+.+ +.....++++++
T Consensus 163 ~llllDEPt~~-------------LD~~~~~~l~~~l~~-~~~~~~tii~vs 200 (236)
T cd03219 163 KLLLLDEPAAG-------------LNPEETEELAELIRE-LRERGITVLLVE 200 (236)
T ss_pred CEEEEcCCccc-------------CCHHHHHHHHHHHHH-HHHCCCEEEEEe
Confidence 999999997 777777777766644 343444556665
No 82
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=5.1e-27 Score=266.76 Aligned_cols=155 Identities=16% Similarity=0.165 Sum_probs=127.7
Q ss_pred CCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc----hhh----hcCceEEEcCCC
Q 001709 710 DFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD----QEG----IAGGLCYCDSAG 778 (1022)
Q Consensus 710 ~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~----~~~----lr~~IGyV~Q~~ 778 (1022)
+...+|+||||+|+ +++|+||||||||||||+|+|++ +|++|+|+++|.++ ... .+++||||||+.
T Consensus 39 ~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~---~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~ 115 (400)
T PRK10070 39 GLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLI---EPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSF 115 (400)
T ss_pred CCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCC---CCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCC
Confidence 44569999999999 99999999999999999999999 99999999998664 112 246799999955
Q ss_pred CCCccccccccchHHHHhcccc-------chHHHHHHHH-HhcCCccccCCCcCCch-HHHHHHHHH---------hhhc
Q 001709 779 VNLQELTMEAARFKDEMWMGIR-------DLSRKTDLIV-LVHNLSHKIPRYNYSSA-SGQQQPALS---------LLLN 840 (1022)
Q Consensus 779 ~~~~~lTV~~~~~~ENI~~g~~-------~~~~~v~~~L-~v~gL~~~~~r~~~~LS-GqrQRvaIA---------LLLD 840 (1022)
..|+++|| +||+.|+.. ...+++.+++ .+ ||.++.++++.+|| |||||++|| ||||
T Consensus 116 ~l~~~~Tv-----~enl~~~~~~~~~~~~~~~~~~~e~L~~~-gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLD 189 (400)
T PRK10070 116 ALMPHMTV-----LDNTAFGMELAGINAEERREKALDALRQV-GLENYAHSYPDELSGGMRQRVGLARALAINPDILLMD 189 (400)
T ss_pred cCCCCCCH-----HHHHHHHHHhcCCCHHHHHHHHHHHHHHc-CCChhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 55888999 999998643 1245677888 87 99999999999999 999999999 9999
Q ss_pred cccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEe
Q 001709 841 EAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVIN 886 (1022)
Q Consensus 841 EPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~ 886 (1022)
|||++ +|...+..+...+.+..++...++++++
T Consensus 190 EPts~-------------LD~~~r~~l~~~L~~l~~~~g~TIIivT 222 (400)
T PRK10070 190 EAFSA-------------LDPLIRTEMQDELVKLQAKHQRTIVFIS 222 (400)
T ss_pred CCCcc-------------CCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 99997 7777788777777655444445666665
No 83
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.94 E-value=8e-27 Score=243.69 Aligned_cols=154 Identities=18% Similarity=0.199 Sum_probs=123.8
Q ss_pred CCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc----hhh-hcCceEEEcCCCCCC
Q 001709 710 DFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD----QEG-IAGGLCYCDSAGVNL 781 (1022)
Q Consensus 710 ~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~----~~~-lr~~IGyV~Q~~~~~ 781 (1022)
+.+.+|++|||+++ +++|+||||||||||||+|+|++ +|++|+|.++|.++ ... .++.++|+||+...+
T Consensus 11 ~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~---~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~ 87 (232)
T cd03218 11 GKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLV---KPDSGKILLDGQDITKLPMHKRARLGIGYLPQEASIF 87 (232)
T ss_pred CCEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCC---CCCCcEEEECCEecccCCHhHHHhccEEEecCCcccc
Confidence 34679999999998 99999999999999999999999 99999999998654 122 346799999955447
Q ss_pred ccccccccchHHHHhcccc--c-----hHHHHHHHH-HhcCCccccCCCcCCch-HHHHHHHHH---------hhhcccc
Q 001709 782 QELTMEAARFKDEMWMGIR--D-----LSRKTDLIV-LVHNLSHKIPRYNYSSA-SGQQQPALS---------LLLNEAK 843 (1022)
Q Consensus 782 ~~lTV~~~~~~ENI~~g~~--~-----~~~~v~~~L-~v~gL~~~~~r~~~~LS-GqrQRvaIA---------LLLDEPT 843 (1022)
+.+|+ +||+.++.. . ..+++++++ .+ |+.+..++.+.+|| |||||++|| |||||||
T Consensus 88 ~~~tv-----~~~l~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt 161 (232)
T cd03218 88 RKLTV-----EENILAVLEIRGLSKKEREEKLEELLEEF-HITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPF 161 (232)
T ss_pred ccCcH-----HHHHHHHHHhcCCCHHHHHHHHHHHHHHc-CChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCc
Confidence 88899 999987532 1 234567788 77 99999999999999 999999999 9999999
Q ss_pred CCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEe
Q 001709 844 SLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVIN 886 (1022)
Q Consensus 844 Sad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~ 886 (1022)
++ +|...+..+...+.+ +.....++++++
T Consensus 162 ~~-------------LD~~~~~~~~~~l~~-~~~~~~tii~~s 190 (232)
T cd03218 162 AG-------------VDPIAVQDIQKIIKI-LKDRGIGVLITD 190 (232)
T ss_pred cc-------------CCHHHHHHHHHHHHH-HHHCCCEEEEEe
Confidence 97 777777776665544 344334555555
No 84
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.94 E-value=6.9e-27 Score=241.36 Aligned_cols=154 Identities=19% Similarity=0.210 Sum_probs=125.1
Q ss_pred CeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc-h------hhhcCceEEEcCCCCC
Q 001709 711 FTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD-Q------EGIAGGLCYCDSAGVN 780 (1022)
Q Consensus 711 ~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~-~------~~lr~~IGyV~Q~~~~ 780 (1022)
..++|+|+||+|+ +++|+||||||||||+|+|+|++ +|++|+|.+++.++ . ..+++.++|++|+...
T Consensus 14 ~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~---~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~ 90 (214)
T TIGR02673 14 GVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGAL---TPSRGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRL 90 (214)
T ss_pred CceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC---CCCCceEEECCEEcccCCHHHHHHHHhheEEEecChhh
Confidence 4579999999999 99999999999999999999999 99999999998654 1 1346789999995444
Q ss_pred CccccccccchHHHHhcccc-------chHHHHHHHH-HhcCCccccCCCcCCch-HHHHHHHHH---------hhhccc
Q 001709 781 LQELTMEAARFKDEMWMGIR-------DLSRKTDLIV-LVHNLSHKIPRYNYSSA-SGQQQPALS---------LLLNEA 842 (1022)
Q Consensus 781 ~~~lTV~~~~~~ENI~~g~~-------~~~~~v~~~L-~v~gL~~~~~r~~~~LS-GqrQRvaIA---------LLLDEP 842 (1022)
++.+|+ .||+.++.. ...+++.+++ .+ +|.+..++.+.+|| |||||++|| ||||||
T Consensus 91 ~~~~tv-----~~~l~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~lllLDEP 164 (214)
T TIGR02673 91 LPDRTV-----YENVALPLEVRGKKEREIQRRVGAALRQV-GLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEP 164 (214)
T ss_pred ccCCcH-----HHHHHHHHHHcCCCHHHHHHHHHHHHHHc-CChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCC
Confidence 778999 999987532 1345677888 77 99988999999999 999999999 999999
Q ss_pred cCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEec
Q 001709 843 KSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINS 887 (1022)
Q Consensus 843 TSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~ 887 (1022)
|++ +|...+..+...+.+ +.....++++++|
T Consensus 165 t~~-------------LD~~~~~~l~~~l~~-~~~~~~tii~~tH 195 (214)
T TIGR02673 165 TGN-------------LDPDLSERILDLLKR-LNKRGTTVIVATH 195 (214)
T ss_pred ccc-------------CCHHHHHHHHHHHHH-HHHcCCEEEEEeC
Confidence 997 777777777766654 4444456666653
No 85
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=8.5e-27 Score=252.38 Aligned_cols=181 Identities=17% Similarity=0.148 Sum_probs=137.5
Q ss_pred ceeEEEEecCCCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc----hhhhcCceE
Q 001709 700 LSDVFIFCTSDFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD----QEGIAGGLC 772 (1022)
Q Consensus 700 l~~~~~~~~~~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~----~~~lr~~IG 772 (1022)
++++.+.+....+++|++|||+|+ +++|+||||||||||+++|+|++ +|++|+|.++|.++ ...+++.||
T Consensus 8 ~~~l~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~---~p~~G~i~~~g~~i~~~~~~~~~~~i~ 84 (279)
T PRK13635 8 VEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLL---LPEAGTITVGGMVLSEETVWDVRRQVG 84 (279)
T ss_pred EEEEEEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC---CCCCcEEEECCEECCcCcHHHHhhheE
Confidence 444444443234569999999999 99999999999999999999999 99999999998665 234567899
Q ss_pred EEcCCCC-CCccccccccchHHHHhcccc----c---hHHHHHHHH-HhcCCccccCCCcCCch-HHHHHHHHH------
Q 001709 773 YCDSAGV-NLQELTMEAARFKDEMWMGIR----D---LSRKTDLIV-LVHNLSHKIPRYNYSSA-SGQQQPALS------ 836 (1022)
Q Consensus 773 yV~Q~~~-~~~~lTV~~~~~~ENI~~g~~----~---~~~~v~~~L-~v~gL~~~~~r~~~~LS-GqrQRvaIA------ 836 (1022)
|+||+.. .++.+|| .|||.++.. . ..+++.+++ .+ ||.++.++.+.+|| |||||++||
T Consensus 85 ~~~q~~~~~~~~~tv-----~enl~~~~~~~~~~~~~~~~~~~~~l~~~-gL~~~~~~~~~~LS~G~~qrv~laral~~~ 158 (279)
T PRK13635 85 MVFQNPDNQFVGATV-----QDDVAFGLENIGVPREEMVERVDQALRQV-GMEDFLNREPHRLSGGQKQRVAIAGVLALQ 158 (279)
T ss_pred EEEeCHHHhcccccH-----HHHHhhhHhhCCCCHHHHHHHHHHHHHHc-CChhhhhCCcccCCHHHHHHHHHHHHHHcC
Confidence 9999543 3667899 999988642 1 245678888 77 99999999999999 999999999
Q ss_pred ---hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCCcccccCccccccc
Q 001709 837 ---LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCPYVMPGAVSASLSW 902 (1022)
Q Consensus 837 ---LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~~V~~~~~~a~~l~ 902 (1022)
|||||||++ +|...+..+...+.+..+....++++++|....+..++..+.+.
T Consensus 159 p~lllLDEPt~g-------------LD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~ 214 (279)
T PRK13635 159 PDIIILDEATSM-------------LDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMN 214 (279)
T ss_pred CCEEEEeCCccc-------------CCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEE
Confidence 999999997 77777777776665443332346666654433333455555443
No 86
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.94 E-value=6.6e-27 Score=255.73 Aligned_cols=169 Identities=14% Similarity=0.077 Sum_probs=129.5
Q ss_pred CCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc---hhhhcCceEEEcCCCCCCcc
Q 001709 710 DFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD---QEGIAGGLCYCDSAGVNLQE 783 (1022)
Q Consensus 710 ~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~---~~~lr~~IGyV~Q~~~~~~~ 783 (1022)
+..++|++|||+|+ +++|+||||||||||+|+|+|++ +|++|+|.++|.++ ....++.|||++|+...++.
T Consensus 15 ~~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~---~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~ 91 (303)
T TIGR01288 15 GDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMI---SPDRGKITVLGEPVPSRARLARVAIGVVPQFDNLDPE 91 (303)
T ss_pred CCeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC---CCCceEEEECCEECcccHHHHhhcEEEEeccccCCcC
Confidence 34679999999998 99999999999999999999999 99999999998664 33457889999995444778
Q ss_pred ccccccchHHHHhcccc----c---hHHHHHHHH-HhcCCccccCCCcCCch-HHHHHHHHH---------hhhccccCC
Q 001709 784 LTMEAARFKDEMWMGIR----D---LSRKTDLIV-LVHNLSHKIPRYNYSSA-SGQQQPALS---------LLLNEAKSL 845 (1022)
Q Consensus 784 lTV~~~~~~ENI~~g~~----~---~~~~v~~~L-~v~gL~~~~~r~~~~LS-GqrQRvaIA---------LLLDEPTSa 845 (1022)
+|+ +||+.+... . ..+++++++ .+ +|.+..++++.+|| |||||++|| |||||||++
T Consensus 92 ~tv-----~e~l~~~~~~~~~~~~~~~~~~~~ll~~~-~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~g 165 (303)
T TIGR01288 92 FTV-----RENLLVFGRYFGMSTREIEAVIPSLLEFA-RLESKADVRVALLSGGMKRRLTLARALINDPQLLILDEPTTG 165 (303)
T ss_pred CcH-----HHHHHHHHHHcCCCHHHHHHHHHHHHHHC-CChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcC
Confidence 999 999975221 1 234567778 77 99999999999999 999999999 999999997
Q ss_pred ChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCCc-ccccCcccccc
Q 001709 846 GIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCPY-VMPGAVSASLS 901 (1022)
Q Consensus 846 d~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~~-V~~~~~~a~~l 901 (1022)
+|...+..+...+.+. .....++++++|... +...++..+.+
T Consensus 166 -------------LD~~~~~~l~~~l~~~-~~~g~til~~sH~~~~~~~~~d~i~~l 208 (303)
T TIGR01288 166 -------------LDPHARHLIWERLRSL-LARGKTILLTTHFMEEAERLCDRLCVL 208 (303)
T ss_pred -------------CCHHHHHHHHHHHHHH-HhCCCEEEEECCCHHHHHHhCCEEEEE
Confidence 7777777776666443 334445555543322 22334444444
No 87
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=6.3e-27 Score=241.53 Aligned_cols=153 Identities=14% Similarity=0.135 Sum_probs=124.4
Q ss_pred CeeEEEeeeEEEe--EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc---hhhhcCceEEEcCCCCCCcccc
Q 001709 711 FTTVFKEVHFRTR--RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD---QEGIAGGLCYCDSAGVNLQELT 785 (1022)
Q Consensus 711 ~~~aLkdVSL~V~--iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~---~~~lr~~IGyV~Q~~~~~~~lT 785 (1022)
..++|+|+||+++ +++|+||||||||||+++|+|++ +|++|+|.++|.++ ...+++.++|++|+...|+.+|
T Consensus 12 ~~~~l~~vs~~i~~g~~~i~G~nGsGKSTLl~~l~Gl~---~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 88 (211)
T cd03264 12 KKRALDGVSLTLGPGMYGLLGPNGAGKTTLMRILATLT---PPSSGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFT 88 (211)
T ss_pred CEEEEcceeEEEcCCcEEEECCCCCCHHHHHHHHhCCC---CCCccEEEECCCccccchHHHHhheEEecCCCcccccCC
Confidence 4579999999999 99999999999999999999999 99999999998765 2345788999999554477789
Q ss_pred ccccchHHHHhcccc-------chHHHHHHHH-HhcCCccccCCCcCCch-HHHHHHHHH---------hhhccccCCCh
Q 001709 786 MEAARFKDEMWMGIR-------DLSRKTDLIV-LVHNLSHKIPRYNYSSA-SGQQQPALS---------LLLNEAKSLGI 847 (1022)
Q Consensus 786 V~~~~~~ENI~~g~~-------~~~~~v~~~L-~v~gL~~~~~r~~~~LS-GqrQRvaIA---------LLLDEPTSad~ 847 (1022)
+ .||+.+... ...+++++++ .+ ||.+..++++.+|| |||||++|| |||||||++
T Consensus 89 v-----~~~l~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~-- 160 (211)
T cd03264 89 V-----REFLDYIAWLKGIPSKEVKARVDEVLELV-NLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAG-- 160 (211)
T ss_pred H-----HHHHHHHHHHhCCCHHHHHHHHHHHHHHC-CCHHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccc--
Confidence 9 999987432 1245677788 77 99988999999999 999999999 999999997
Q ss_pred hHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEec
Q 001709 848 PWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINS 887 (1022)
Q Consensus 848 ~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~ 887 (1022)
+|...+..+...+.+ +.. ..++++++|
T Consensus 161 -----------LD~~~~~~l~~~l~~-~~~-~~tii~vsH 187 (211)
T cd03264 161 -----------LDPEERIRFRNLLSE-LGE-DRIVILSTH 187 (211)
T ss_pred -----------CCHHHHHHHHHHHHH-HhC-CCEEEEEcC
Confidence 677777776665543 343 355566653
No 88
>PF01764 Lipase_3: Lipase (class 3); InterPro: IPR002921 Triglyceride lipases are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. This family of lipases have been called Class 3 as they are not closely related to other lipase families.; GO: 0004806 triglyceride lipase activity, 0006629 lipid metabolic process; PDB: 1LGY_A 1DTE_A 1DT5_F 4DYH_B 1DU4_C 4EA6_B 1GT6_B 1EIN_A 1DT3_A 1TIB_A ....
Probab=99.94 E-value=6.5e-27 Score=224.74 Aligned_cols=133 Identities=28% Similarity=0.364 Sum_probs=101.4
Q ss_pred EEEEcCCCCchhhhhhccccccccccccchhhhhhhccccchhhhhccCCCCCCCCCCCCCcccCCCCCCcccHhHHHHH
Q 001709 136 FASFIGTKQYKDVMTDANILQGAIFHEDAIEDMEGIELGESKQAKEQKGNGENRWNPLEKPRQLKDKPKPAAHRGFLARA 215 (1022)
Q Consensus 136 VVAFRGT~s~~DwitDl~~~q~~~f~~~~l~~~~~~~a~~~~~~~~q~g~~~~~g~~~~~~k~~~~~~~~~VH~GFl~a~ 215 (1022)
|||||||.+..||++|+++....... . . ...+.||.||+..+
T Consensus 1 vva~RGT~s~~d~~~d~~~~~~~~~~--------------------------~----------~--~~~~~vh~g~~~~~ 42 (140)
T PF01764_consen 1 VVAFRGTNSPSDWLTDLDAWPVSWSS--------------------------F----------L--LDGGRVHSGFLDAA 42 (140)
T ss_dssp EEEEEESSSHHHHHHHTHHCEEECTT--------------------------S----------T--TCTHEEEHHHHHHH
T ss_pred eEEEECCCCHHHHHHhcccCceeccc--------------------------c----------c--cCceEEehhHHHHH
Confidence 79999999999999999876433200 0 0 12568999999999
Q ss_pred h-cChhH----HHHHHHhcCCCeEEEeccChhHHHHHHHHHHHHHHHhhhcccccCCCcceEEEEeCCCccccHHHHHHH
Q 001709 216 K-GIPAL----ELYRLAQKKKRKLVLCGHSLGGAVAALATLAILRVVAASSSLKENDKVQVKCITFSQPPVGNAALRDYV 290 (1022)
Q Consensus 216 ~-~I~~~----~l~~l~~~p~ykLVvTGHSLGGALAtLAAl~LLr~~~~~~~~~~~~~~~V~vyTFGqPRVGN~aFA~~v 290 (1022)
. ..... +.....++++++|++||||||||+|+|+++.+... ......++.|||||+||+||..|+.++
T Consensus 43 ~~~~~~~~~~~l~~~~~~~~~~~i~itGHSLGGalA~l~a~~l~~~-------~~~~~~~~~~~~fg~P~~~~~~~~~~~ 115 (140)
T PF01764_consen 43 EDSLYDQILDALKELVEKYPDYSIVITGHSLGGALASLAAADLASH-------GPSSSSNVKCYTFGAPRVGNSAFAKWY 115 (140)
T ss_dssp HCHHHHHHHHHHHHHHHHSTTSEEEEEEETHHHHHHHHHHHHHHHC-------TTTSTTTEEEEEES-S--BEHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcccCccchhhccchHHHHHHHHHHhhhhc-------ccccccceeeeecCCccccCHHHHHHH
Confidence 8 43322 33346788999999999999999999999887542 122246799999999999999999999
Q ss_pred HhcCCCceeEEEeeCCCcccccCC
Q 001709 291 NRKGWQHYFKSYCIPEDLVPRILS 314 (1022)
Q Consensus 291 ~~~~~~~~f~RVVh~~DiVPrLP~ 314 (1022)
++.... .++||+|.+|+|||+|+
T Consensus 116 ~~~~~~-~~~~iv~~~D~Vp~~p~ 138 (140)
T PF01764_consen 116 DSLFNR-NIFRIVNQNDIVPRLPP 138 (140)
T ss_dssp HHHTSC-GEEEEEETTBSGGGTS-
T ss_pred HhhCCC-eEEEEEECCCEeeecCC
Confidence 987554 45699999999999995
No 89
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.94 E-value=1.2e-26 Score=240.62 Aligned_cols=155 Identities=21% Similarity=0.260 Sum_probs=123.5
Q ss_pred CeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc----hhh-hcCceEEEcCCCCCCc
Q 001709 711 FTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD----QEG-IAGGLCYCDSAGVNLQ 782 (1022)
Q Consensus 711 ~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~----~~~-lr~~IGyV~Q~~~~~~ 782 (1022)
..++|++|||+++ +++|+||||||||||+++|+|++ +|++|+|.+++.++ ... .++.|+|+||+...++
T Consensus 12 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~---~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~ 88 (222)
T cd03224 12 KSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLL---PPRSGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFP 88 (222)
T ss_pred CeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCC---CCCCceEEECCEEcCCCCHHHHHhcCeEEeccccccCC
Confidence 4579999999998 99999999999999999999999 99999999998654 122 3567999999544488
Q ss_pred cccccccchHHHHhccccc-----hHHHHHHHH-HhcCCccccCCCcCCch-HHHHHHHHH---------hhhccccCCC
Q 001709 783 ELTMEAARFKDEMWMGIRD-----LSRKTDLIV-LVHNLSHKIPRYNYSSA-SGQQQPALS---------LLLNEAKSLG 846 (1022)
Q Consensus 783 ~lTV~~~~~~ENI~~g~~~-----~~~~v~~~L-~v~gL~~~~~r~~~~LS-GqrQRvaIA---------LLLDEPTSad 846 (1022)
.+|+ +||+.++... ..+++.+++ .+.++.+..++++.+|| |||||++|| |||||||++
T Consensus 89 ~~t~-----~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~- 162 (222)
T cd03224 89 ELTV-----EENLLLGAYARRRAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEG- 162 (222)
T ss_pred CCcH-----HHHHHHHhhhcCchhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCCEEEECCCccc-
Confidence 8899 9999876431 234566677 65357888899999999 999999999 999999997
Q ss_pred hhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEec
Q 001709 847 IPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINS 887 (1022)
Q Consensus 847 ~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~ 887 (1022)
+|...+..+...+.+. .....++++++|
T Consensus 163 ------------LD~~~~~~l~~~l~~~-~~~~~tiii~sH 190 (222)
T cd03224 163 ------------LAPKIVEEIFEAIREL-RDEGVTILLVEQ 190 (222)
T ss_pred ------------CCHHHHHHHHHHHHHH-HHCCCEEEEEeC
Confidence 7777777777766544 334445555553
No 90
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.94 E-value=1e-26 Score=236.68 Aligned_cols=154 Identities=18% Similarity=0.161 Sum_probs=123.1
Q ss_pred CCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc------hhhhcCceEEEcCCCC-
Q 001709 710 DFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD------QEGIAGGLCYCDSAGV- 779 (1022)
Q Consensus 710 ~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~------~~~lr~~IGyV~Q~~~- 779 (1022)
+++.+|++|||+|+ +++|+||||||||||+|+|+|++ +|++|+|.++|.++ ....++.++|++|+..
T Consensus 3 ~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~---~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~ 79 (190)
T TIGR01166 3 GGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLL---RPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDD 79 (190)
T ss_pred CccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC---CCCceeEEECCEEccccccchHHHHhhEEEEecChhh
Confidence 34679999999999 99999999999999999999999 99999999998653 1245678999999543
Q ss_pred CCccccccccchHHHHhcccc----c---hHHHHHHHH-HhcCCccccCCCcCCch-HHHHHHHHH---------hhhcc
Q 001709 780 NLQELTMEAARFKDEMWMGIR----D---LSRKTDLIV-LVHNLSHKIPRYNYSSA-SGQQQPALS---------LLLNE 841 (1022)
Q Consensus 780 ~~~~lTV~~~~~~ENI~~g~~----~---~~~~v~~~L-~v~gL~~~~~r~~~~LS-GqrQRvaIA---------LLLDE 841 (1022)
.++.+|+ +||+.++.. . ..+++++++ .+ ||.+..++++.+|| |||||++|| |||||
T Consensus 80 ~~~~~tv-----~~nl~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE 153 (190)
T TIGR01166 80 QLFAADV-----DQDVAFGPLNLGLSEAEVERRVREALTAV-GASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDE 153 (190)
T ss_pred ccccccH-----HHHHHHHHHHcCCCHHHHHHHHHHHHHHc-CchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 3445799 999987532 1 234677788 77 99999999999999 999999999 99999
Q ss_pred ccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEe
Q 001709 842 AKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVIN 886 (1022)
Q Consensus 842 PTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~ 886 (1022)
||++ +|...+..+...+.+ +.....++++++
T Consensus 154 Pt~~-------------LD~~~~~~~~~~l~~-~~~~~~tili~s 184 (190)
T TIGR01166 154 PTAG-------------LDPAGREQMLAILRR-LRAEGMTVVIST 184 (190)
T ss_pred Cccc-------------CCHHHHHHHHHHHHH-HHHcCCEEEEEe
Confidence 9997 777777777666644 344434555555
No 91
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.94 E-value=1.1e-26 Score=239.49 Aligned_cols=164 Identities=15% Similarity=0.133 Sum_probs=128.4
Q ss_pred eeEEEEecCCCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc------hhhhcCce
Q 001709 701 SDVFIFCTSDFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD------QEGIAGGL 771 (1022)
Q Consensus 701 ~~~~~~~~~~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~------~~~lr~~I 771 (1022)
+++.+.+ +..++|+++||+++ +++|+||||||||||+|+|+|++ +|++|+|.+++.++ ....++.|
T Consensus 4 ~~l~~~~--~~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~---~~~~G~i~~~g~~~~~~~~~~~~~~~~i 78 (213)
T cd03262 4 KNLHKSF--GDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLE---EPDSGTIIIDGLKLTDDKKNINELRQKV 78 (213)
T ss_pred EEEEEEE--CCeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCC---CCCCceEEECCEECCccchhHHHHHhcc
Confidence 3444443 34679999999998 99999999999999999999999 99999999998553 23456789
Q ss_pred EEEcCCCCCCccccccccchHHHHhcccc---c-----hHHHHHHHH-HhcCCccccCCCcCCch-HHHHHHHHH-----
Q 001709 772 CYCDSAGVNLQELTMEAARFKDEMWMGIR---D-----LSRKTDLIV-LVHNLSHKIPRYNYSSA-SGQQQPALS----- 836 (1022)
Q Consensus 772 GyV~Q~~~~~~~lTV~~~~~~ENI~~g~~---~-----~~~~v~~~L-~v~gL~~~~~r~~~~LS-GqrQRvaIA----- 836 (1022)
+|++|+...++.+|+ .||+.++.. . ..+++.+++ .+ |+.+..++++.+|| |||||++||
T Consensus 79 ~~~~q~~~~~~~~t~-----~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~LS~G~~qrv~la~al~~ 152 (213)
T cd03262 79 GMVFQQFNLFPHLTV-----LENITLAPIKVKGMSKAEAEERALELLEKV-GLADKADAYPAQLSGGQQQRVAIARALAM 152 (213)
T ss_pred eEEecccccCCCCcH-----HHHHHhHHHHhcCCCHHHHHHHHHHHHHHc-CCHhHhhhCccccCHHHHHHHHHHHHHhc
Confidence 999995444777999 999987531 1 234567778 77 99988999999999 999999999
Q ss_pred ----hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCC
Q 001709 837 ----LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCP 889 (1022)
Q Consensus 837 ----LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~ 889 (1022)
|||||||++ +|...+..+...+. .+.....++++++|..
T Consensus 153 ~p~llllDEP~~~-------------LD~~~~~~l~~~l~-~~~~~~~tvi~~sh~~ 195 (213)
T cd03262 153 NPKVMLFDEPTSA-------------LDPELVGEVLDVMK-DLAEEGMTMVVVTHEM 195 (213)
T ss_pred CCCEEEEeCCccC-------------CCHHHHHHHHHHHH-HHHHcCCEEEEEeCCH
Confidence 999999997 77777777666654 4444444666665433
No 92
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.94 E-value=1.1e-26 Score=264.09 Aligned_cols=153 Identities=22% Similarity=0.205 Sum_probs=125.2
Q ss_pred CCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc----hhhhcCceEEEcCCCCCCc
Q 001709 710 DFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD----QEGIAGGLCYCDSAGVNLQ 782 (1022)
Q Consensus 710 ~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~----~~~lr~~IGyV~Q~~~~~~ 782 (1022)
+++++|++|||+|+ +++|+||||||||||||+|+|++ +|++|+|.++|.++ ...++++||||+|+...++
T Consensus 14 ~~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll---~p~sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~~l~~ 90 (402)
T PRK09536 14 GDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTL---TPTAGTVLVAGDDVEALSARAASRRVASVPQDTSLSF 90 (402)
T ss_pred CCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCC---CCCCcEEEECCEEcCcCCHHHHhcceEEEccCCCCCC
Confidence 45789999999998 99999999999999999999999 99999999998664 3566788999999554567
Q ss_pred cccccccchHHHHhcccc-----------chHHHHHHHH-HhcCCccccCCCcCCch-HHHHHHHHH---------hhhc
Q 001709 783 ELTMEAARFKDEMWMGIR-----------DLSRKTDLIV-LVHNLSHKIPRYNYSSA-SGQQQPALS---------LLLN 840 (1022)
Q Consensus 783 ~lTV~~~~~~ENI~~g~~-----------~~~~~v~~~L-~v~gL~~~~~r~~~~LS-GqrQRvaIA---------LLLD 840 (1022)
.+|+ +||+.++.. ...+++++++ .+ ||.++.++++.+|| |||||++|| ||||
T Consensus 91 ~~tv-----~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~v-gl~~~~~~~~~~LSgGerQRv~IArAL~~~P~iLLLD 164 (402)
T PRK09536 91 EFDV-----RQVVEMGRTPHRSRFDTWTETDRAAVERAMERT-GVAQFADRPVTSLSGGERQRVLLARALAQATPVLLLD 164 (402)
T ss_pred CCCH-----HHHHHhccchhcccccCCCHHHHHHHHHHHHHc-CCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 8999 999988642 1345688888 87 99999999999999 999999999 9999
Q ss_pred cccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEE
Q 001709 841 EAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVI 885 (1022)
Q Consensus 841 EPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv 885 (1022)
|||++ +|...+..+...+.+. .....+++++
T Consensus 165 EPtsg-------------LD~~~~~~l~~lL~~l-~~~g~TIIiv 195 (402)
T PRK09536 165 EPTAS-------------LDINHQVRTLELVRRL-VDDGKTAVAA 195 (402)
T ss_pred CCccc-------------CCHHHHHHHHHHHHHH-HhcCCEEEEE
Confidence 99996 6666666666555443 3333344444
No 93
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=1.4e-26 Score=244.19 Aligned_cols=153 Identities=16% Similarity=0.177 Sum_probs=124.0
Q ss_pred eeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc----hhhhcCceEEEcCCCCCCccc
Q 001709 712 TTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD----QEGIAGGLCYCDSAGVNLQEL 784 (1022)
Q Consensus 712 ~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~----~~~lr~~IGyV~Q~~~~~~~l 784 (1022)
..+|+++||+|+ +++|+||||||||||+|+|+|++ +|++|+|.++|.++ ....++.++|++|+...++.+
T Consensus 14 ~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~---~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 90 (242)
T cd03295 14 KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLI---EPTSGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHM 90 (242)
T ss_pred ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCC---CCCCceEEECCeEcCcCChHHhhcceEEEccCccccCCC
Confidence 579999999998 99999999999999999999999 99999999998654 234567899999954447789
Q ss_pred cccccchHHHHhcccc----c---hHHHHHHHH-HhcCCcc--ccCCCcCCch-HHHHHHHHH---------hhhccccC
Q 001709 785 TMEAARFKDEMWMGIR----D---LSRKTDLIV-LVHNLSH--KIPRYNYSSA-SGQQQPALS---------LLLNEAKS 844 (1022)
Q Consensus 785 TV~~~~~~ENI~~g~~----~---~~~~v~~~L-~v~gL~~--~~~r~~~~LS-GqrQRvaIA---------LLLDEPTS 844 (1022)
|+ +||+.++.. . ..+++.+++ .+ ||.+ ..++++.+|| |||||++|| |||||||+
T Consensus 91 tv-----~e~l~~~~~~~~~~~~~~~~~~~~~l~~l-~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~ 164 (242)
T cd03295 91 TV-----EENIALVPKLLKWPKEKIRERADELLALV-GLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFG 164 (242)
T ss_pred cH-----HHHHHHHHHHcCCCHHHHHHHHHHHHHHc-CCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcc
Confidence 99 999987532 1 234677888 77 9985 7899999999 999999999 99999999
Q ss_pred CChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEe
Q 001709 845 LGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVIN 886 (1022)
Q Consensus 845 ad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~ 886 (1022)
+ +|...+..+...+.+.......++++++
T Consensus 165 ~-------------LD~~~~~~l~~~L~~~~~~~g~tvii~s 193 (242)
T cd03295 165 A-------------LDPITRDQLQEEFKRLQQELGKTIVFVT 193 (242)
T ss_pred c-------------CCHHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 7 7777777766666544333344555555
No 94
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=9.6e-27 Score=243.57 Aligned_cols=153 Identities=19% Similarity=0.219 Sum_probs=124.1
Q ss_pred eEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc-h------hhhcCceEEEcCCCCCCc
Q 001709 713 TVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD-Q------EGIAGGLCYCDSAGVNLQ 782 (1022)
Q Consensus 713 ~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~-~------~~lr~~IGyV~Q~~~~~~ 782 (1022)
++|+++||+|+ +++|+||||||||||+|+|+|++ +|++|+|.++|.++ . ...++.|+|++|+...|+
T Consensus 19 ~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~---~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 95 (233)
T cd03258 19 TALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLE---RPTSGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLS 95 (233)
T ss_pred eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC---CCCCceEEECCEEcccCCHHHHHHHHhheEEEccCcccCC
Confidence 79999999999 99999999999999999999999 99999999998664 1 123678999999544477
Q ss_pred cccccccchHHHHhcccc----c---hHHHHHHHH-HhcCCccccCCCcCCch-HHHHHHHHH---------hhhccccC
Q 001709 783 ELTMEAARFKDEMWMGIR----D---LSRKTDLIV-LVHNLSHKIPRYNYSSA-SGQQQPALS---------LLLNEAKS 844 (1022)
Q Consensus 783 ~lTV~~~~~~ENI~~g~~----~---~~~~v~~~L-~v~gL~~~~~r~~~~LS-GqrQRvaIA---------LLLDEPTS 844 (1022)
.+|+ +||+.++.. . ..+.+.+++ .+ +|.+..++.+.+|| |||||++|| |||||||+
T Consensus 96 ~~t~-----~e~l~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~ 169 (233)
T cd03258 96 SRTV-----FENVALPLEIAGVPKAEIEERVLELLELV-GLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATS 169 (233)
T ss_pred CCcH-----HHHHHHHHHHcCCCHHHHHHHHHHHHHHC-CChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCC
Confidence 7999 999987532 1 234577788 77 99999999999999 999999999 99999999
Q ss_pred CChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEec
Q 001709 845 LGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINS 887 (1022)
Q Consensus 845 ad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~ 887 (1022)
+ +|...+..+...+.+..+....++++++|
T Consensus 170 ~-------------LD~~~~~~l~~~l~~~~~~~~~tvii~sH 199 (233)
T cd03258 170 A-------------LDPETTQSILALLRDINRELGLTIVLITH 199 (233)
T ss_pred c-------------CCHHHHHHHHHHHHHHHHHcCCEEEEEeC
Confidence 7 77777777776665443333445666653
No 95
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.94 E-value=1.5e-26 Score=241.42 Aligned_cols=168 Identities=12% Similarity=0.136 Sum_probs=128.8
Q ss_pred eeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc----hh---hh-cCceEEEcCCCCC
Q 001709 712 TTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD----QE---GI-AGGLCYCDSAGVN 780 (1022)
Q Consensus 712 ~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~----~~---~l-r~~IGyV~Q~~~~ 780 (1022)
.++|+++||+++ +++|+||||||||||+|+|+|++ +|++|+|.++|.++ .. .. +++++|++|+...
T Consensus 23 ~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~---~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l 99 (228)
T PRK10584 23 LSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLD---DGSSGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFML 99 (228)
T ss_pred eEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCC---CCCCeeEEECCEEcccCCHHHHHHHHhheEEEEEccccc
Confidence 369999999998 99999999999999999999999 99999999998654 11 12 3579999995444
Q ss_pred CccccccccchHHHHhcccc-------chHHHHHHHH-HhcCCccccCCCcCCch-HHHHHHHHH---------hhhccc
Q 001709 781 LQELTMEAARFKDEMWMGIR-------DLSRKTDLIV-LVHNLSHKIPRYNYSSA-SGQQQPALS---------LLLNEA 842 (1022)
Q Consensus 781 ~~~lTV~~~~~~ENI~~g~~-------~~~~~v~~~L-~v~gL~~~~~r~~~~LS-GqrQRvaIA---------LLLDEP 842 (1022)
++.+|+ .||+.++.. ...+++.+++ .+ +|.+..++++.+|| |||||++|| ||||||
T Consensus 100 ~~~~tv-----~~~l~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~LS~Ge~qrl~la~al~~~p~llllDEP 173 (228)
T PRK10584 100 IPTLNA-----LENVELPALLRGESSRQSRNGAKALLEQL-GLGKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEP 173 (228)
T ss_pred CCCcCH-----HHHHHHHHHhcCCCHHHHHHHHHHHHHHc-CCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 777899 999976421 1345678888 87 99999999999999 999999999 999999
Q ss_pred cCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCCcccccCcccccc
Q 001709 843 KSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCPYVMPGAVSASLS 901 (1022)
Q Consensus 843 TSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~~V~~~~~~a~~l 901 (1022)
|++ +|...+..+...+.+..+....++++++|....+..++..+.+
T Consensus 174 t~~-------------LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~i~~l 219 (228)
T PRK10584 174 TGN-------------LDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAARCDRRLRL 219 (228)
T ss_pred CCC-------------CCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEE
Confidence 997 6777777766666544333344666665444333334444433
No 96
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=1.1e-26 Score=252.83 Aligned_cols=153 Identities=16% Similarity=0.221 Sum_probs=123.9
Q ss_pred eeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc--------hhhhcCceEEEcCCCC-
Q 001709 712 TTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD--------QEGIAGGLCYCDSAGV- 779 (1022)
Q Consensus 712 ~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~--------~~~lr~~IGyV~Q~~~- 779 (1022)
.++|+||||+|+ +++|+||||||||||+|+|+|++ +|++|+|.++|.++ ....++.||||||++.
T Consensus 20 ~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~---~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~ 96 (290)
T PRK13634 20 RRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLL---QPTSGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEH 96 (290)
T ss_pred ccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC---CCCCcEEEECCEECccccccchHHHHHhhEEEEeeCchh
Confidence 469999999999 99999999999999999999999 99999999998653 2345678999999543
Q ss_pred CCccccccccchHHHHhccccc-------hHHHHHHHH-HhcCCc-cccCCCcCCch-HHHHHHHHH---------hhhc
Q 001709 780 NLQELTMEAARFKDEMWMGIRD-------LSRKTDLIV-LVHNLS-HKIPRYNYSSA-SGQQQPALS---------LLLN 840 (1022)
Q Consensus 780 ~~~~lTV~~~~~~ENI~~g~~~-------~~~~v~~~L-~v~gL~-~~~~r~~~~LS-GqrQRvaIA---------LLLD 840 (1022)
.++..|| .|||.|+... ..+++++++ .+ ||. +..++++.+|| |||||++|| ||||
T Consensus 97 ~l~~~tv-----~eni~~~~~~~~~~~~~~~~~~~~~l~~~-gL~~~~~~~~~~~LSgGq~qrv~lAraL~~~P~llllD 170 (290)
T PRK13634 97 QLFEETV-----EKDICFGPMNFGVSEEDAKQKAREMIELV-GLPEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLD 170 (290)
T ss_pred hhhhhhH-----HHHHHHHHHHcCCCHHHHHHHHHHHHHHC-CCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 2445799 9999887431 235678888 77 996 67899999999 999999999 9999
Q ss_pred cccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEe
Q 001709 841 EAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVIN 886 (1022)
Q Consensus 841 EPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~ 886 (1022)
|||++ +|...+..+...+.+..+....++++++
T Consensus 171 EPt~~-------------LD~~~~~~l~~~L~~l~~~~g~tviiit 203 (290)
T PRK13634 171 EPTAG-------------LDPKGRKEMMEMFYKLHKEKGLTTVLVT 203 (290)
T ss_pred CCccc-------------CCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 99997 7777777777766544343344666665
No 97
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=1.3e-26 Score=239.19 Aligned_cols=149 Identities=17% Similarity=0.196 Sum_probs=121.3
Q ss_pred eeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc--hhhhcCceEEEcCCCCCCccccccccch
Q 001709 717 EVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD--QEGIAGGLCYCDSAGVNLQELTMEAARF 791 (1022)
Q Consensus 717 dVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~--~~~lr~~IGyV~Q~~~~~~~lTV~~~~~ 791 (1022)
|+||+++ +++|+||||||||||+|+|+|++ +|++|+|.+++.++ ....++.++|++|+...++.+|+
T Consensus 16 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~---~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv----- 87 (211)
T cd03298 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFE---TPQSGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTV----- 87 (211)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC---CCCCceEEECCEEcCcCCHhHccEEEEecccccCCCCcH-----
Confidence 9999998 99999999999999999999999 99999999998665 22245789999995444777899
Q ss_pred HHHHhcccc-------chHHHHHHHH-HhcCCccccCCCcCCch-HHHHHHHHH---------hhhccccCCChhHHHHH
Q 001709 792 KDEMWMGIR-------DLSRKTDLIV-LVHNLSHKIPRYNYSSA-SGQQQPALS---------LLLNEAKSLGIPWVLAI 853 (1022)
Q Consensus 792 ~ENI~~g~~-------~~~~~v~~~L-~v~gL~~~~~r~~~~LS-GqrQRvaIA---------LLLDEPTSad~~~v~~I 853 (1022)
+||+.++.. ..++++.+++ .+ ||.+..++++.+|| |||||++|| |||||||++
T Consensus 88 ~enl~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~llllDEP~~~-------- 158 (211)
T cd03298 88 EQNVGLGLSPGLKLTAEDRQAIEVALARV-GLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAA-------- 158 (211)
T ss_pred HHHHhcccccccCccHHHHHHHHHHHHHc-CCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCccc--------
Confidence 999987643 1244677888 77 99999999999999 999999999 999999997
Q ss_pred hhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEec
Q 001709 854 TNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINS 887 (1022)
Q Consensus 854 ~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~ 887 (1022)
+|...+..+...+.+..+....++++++|
T Consensus 159 -----LD~~~~~~l~~~l~~~~~~~~~tii~~sH 187 (211)
T cd03298 159 -----LDPALRAEMLDLVLDLHAETKMTVLMVTH 187 (211)
T ss_pred -----CCHHHHHHHHHHHHHHHHhcCCEEEEEec
Confidence 77777777776665443333446666653
No 98
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.94 E-value=1.2e-26 Score=273.22 Aligned_cols=178 Identities=22% Similarity=0.229 Sum_probs=137.1
Q ss_pred ceeEEEEecCCCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc----hhhhcCceE
Q 001709 700 LSDVFIFCTSDFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD----QEGIAGGLC 772 (1022)
Q Consensus 700 l~~~~~~~~~~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~----~~~lr~~IG 772 (1022)
++++.++++ +++++|+||||+++ +++|+||||||||||+++|+|++ |++|+|.+||.++ ...+|+.|+
T Consensus 352 ~~~vsf~~~-~~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~----p~~G~I~i~g~~i~~~~~~~lr~~i~ 426 (588)
T PRK11174 352 AEDLEILSP-DGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL----PYQGSLKINGIELRELDPESWRKHLS 426 (588)
T ss_pred EEeeEEecc-CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC----CCCcEEEECCEecccCCHHHHHhheE
Confidence 666655554 34689999999998 99999999999999999999998 7899999998654 678899999
Q ss_pred EEcCCCCCCccccccccchHHHHhccccc-hHHHHHHHH-H----------hcCCccccCCCcCCch-HHHHHHHHH---
Q 001709 773 YCDSAGVNLQELTMEAARFKDEMWMGIRD-LSRKTDLIV-L----------VHNLSHKIPRYNYSSA-SGQQQPALS--- 836 (1022)
Q Consensus 773 yV~Q~~~~~~~lTV~~~~~~ENI~~g~~~-~~~~v~~~L-~----------v~gL~~~~~r~~~~LS-GqrQRvaIA--- 836 (1022)
||+| ++.+++.|+ +|||.++..+ .++++.+++ . ..|++...++....|| |||||++||
T Consensus 427 ~v~Q-~~~LF~~TI-----~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAl 500 (588)
T PRK11174 427 WVGQ-NPQLPHGTL-----RDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARAL 500 (588)
T ss_pred EecC-CCcCCCcCH-----HHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHH
Confidence 9999 556555899 9999998653 333444443 2 2355666777888999 999999999
Q ss_pred ------hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCCcccccCcccccccC
Q 001709 837 ------LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCPYVMPGAVSASLSWG 903 (1022)
Q Consensus 837 ------LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~~V~~~~~~a~~l~~ 903 (1022)
||||||||+ +|.++...+...+.+. . ...|+++++|-...+..+|..+.+.+
T Consensus 501 l~~~~IliLDE~TSa-------------LD~~te~~i~~~l~~~-~-~~~TvIiItHrl~~i~~aD~Iivl~~ 558 (588)
T PRK11174 501 LQPCQLLLLDEPTAS-------------LDAHSEQLVMQALNAA-S-RRQTTLMVTHQLEDLAQWDQIWVMQD 558 (588)
T ss_pred hcCCCEEEEeCCccC-------------CCHHHHHHHHHHHHHH-h-CCCEEEEEecChHHHHhCCEEEEEeC
Confidence 999999997 7887777776655333 2 23577777766666666666666643
No 99
>PRK10908 cell division protein FtsE; Provisional
Probab=99.94 E-value=1.8e-26 Score=240.13 Aligned_cols=168 Identities=17% Similarity=0.132 Sum_probs=129.6
Q ss_pred CeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc----hh---hhcCceEEEcCCCCC
Q 001709 711 FTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD----QE---GIAGGLCYCDSAGVN 780 (1022)
Q Consensus 711 ~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~----~~---~lr~~IGyV~Q~~~~ 780 (1022)
..++|+||||+|+ +++|+||||||||||+|+|+|++ +|++|+|.+++.++ .. ..++.++|++|+...
T Consensus 14 ~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~---~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~~~ 90 (222)
T PRK10908 14 GRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIE---RPSAGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHL 90 (222)
T ss_pred CCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC---CCCceEEEECCEEcccCChhHHHHHHhheEEEecCccc
Confidence 4579999999998 99999999999999999999999 99999999998654 11 246789999995444
Q ss_pred CccccccccchHHHHhcccc----c---hHHHHHHHH-HhcCCccccCCCcCCch-HHHHHHHHH---------hhhccc
Q 001709 781 LQELTMEAARFKDEMWMGIR----D---LSRKTDLIV-LVHNLSHKIPRYNYSSA-SGQQQPALS---------LLLNEA 842 (1022)
Q Consensus 781 ~~~lTV~~~~~~ENI~~g~~----~---~~~~v~~~L-~v~gL~~~~~r~~~~LS-GqrQRvaIA---------LLLDEP 842 (1022)
++.+|+ +||+.++.. . ..+++++++ .+ +|.+..++++.+|| |||||++|| ||||||
T Consensus 91 ~~~~tv-----~~~l~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP 164 (222)
T PRK10908 91 LMDRTV-----YDNVAIPLIIAGASGDDIRRRVSAALDKV-GLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEP 164 (222)
T ss_pred cccccH-----HHHHHhHHHhcCCCHHHHHHHHHHHHHHc-CChhhhhCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 778999 999987532 1 234567778 77 99988999999999 999999999 999999
Q ss_pred cCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCCcc-cccCcccccc
Q 001709 843 KSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCPYV-MPGAVSASLS 901 (1022)
Q Consensus 843 TSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~~V-~~~~~~a~~l 901 (1022)
|++ +|...+..+...+.+ +.....++++++|.... ...++..+.+
T Consensus 165 t~~-------------LD~~~~~~l~~~l~~-~~~~~~tiii~sH~~~~~~~~~d~i~~l 210 (222)
T PRK10908 165 TGN-------------LDDALSEGILRLFEE-FNRVGVTVLMATHDIGLISRRSYRMLTL 210 (222)
T ss_pred CCc-------------CCHHHHHHHHHHHHH-HHHCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 997 777777777765544 34444566666543332 2334444444
No 100
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.94 E-value=7.4e-27 Score=264.05 Aligned_cols=171 Identities=17% Similarity=0.168 Sum_probs=136.6
Q ss_pred ecCCCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccc----cc----hh---hh-cCce
Q 001709 707 CTSDFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEA----DD----QE---GI-AGGL 771 (1022)
Q Consensus 707 ~~~~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~----~~----~~---~l-r~~I 771 (1022)
..++...+|+||||+|+ +++|+||||||||||+|+|+|++ +|++|+|+++|. ++ .. .. +++|
T Consensus 32 ~~~g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~---~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i 108 (382)
T TIGR03415 32 DETGLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLN---PVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRV 108 (382)
T ss_pred HhhCCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC---CCCCcEEEECCEecccccccCCHHHHHHHhcCCE
Confidence 34467789999999999 99999999999999999999999 999999999974 32 11 22 2589
Q ss_pred EEEcCCCCCCccccccccchHHHHhcccc-------chHHHHHHHH-HhcCCccccCCCcCCch-HHHHHHHHH------
Q 001709 772 CYCDSAGVNLQELTMEAARFKDEMWMGIR-------DLSRKTDLIV-LVHNLSHKIPRYNYSSA-SGQQQPALS------ 836 (1022)
Q Consensus 772 GyV~Q~~~~~~~lTV~~~~~~ENI~~g~~-------~~~~~v~~~L-~v~gL~~~~~r~~~~LS-GqrQRvaIA------ 836 (1022)
+||||+..+|+++|| +||+.|+.. ...+++.+++ .+ ||.+..++++.+|| |||||++||
T Consensus 109 ~~vfQ~~~l~p~~Tv-----~eNi~~~~~~~g~~~~~~~~~a~e~le~v-gL~~~~~~~~~~LSgGq~QRV~LARALa~~ 182 (382)
T TIGR03415 109 SMVFQKFALMPWLTV-----EENVAFGLEMQGMPEAERRKRVDEQLELV-GLAQWADKKPGELSGGMQQRVGLARAFAMD 182 (382)
T ss_pred EEEECCCcCCCCCcH-----HHHHHHHHHhcCCCHHHHHHHHHHHHHHc-CCchhhcCChhhCCHHHHHHHHHHHHHhcC
Confidence 999995555888999 999998753 1345678888 88 99999999999999 999999999
Q ss_pred ---hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCCcccccCcccccccCCC
Q 001709 837 ---LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCPYVMPGAVSASLSWGAS 905 (1022)
Q Consensus 837 ---LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~~V~~~~~~a~~l~~~~ 905 (1022)
|||||||++ +|...+..+...+.+..++.+.++++++ |+.+++..+++++
T Consensus 183 P~ILLlDEPts~-------------LD~~~r~~l~~~L~~l~~~~~~TII~iT------Hdl~e~~~l~DrI 235 (382)
T TIGR03415 183 ADILLMDEPFSA-------------LDPLIRTQLQDELLELQAKLNKTIIFVS------HDLDEALKIGNRI 235 (382)
T ss_pred CCEEEEECCCcc-------------CCHHHHHHHHHHHHHHHHhcCCEEEEEe------CCHHHHHHhCCEE
Confidence 999999997 7777888888777665444455666665 4444444444444
No 101
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.94 E-value=1.8e-26 Score=248.06 Aligned_cols=166 Identities=15% Similarity=0.149 Sum_probs=128.9
Q ss_pred ccccCceeEEEEecCCCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc----h---
Q 001709 695 IRPEGLSDVFIFCTSDFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD----Q--- 764 (1022)
Q Consensus 695 i~~~~l~~~~~~~~~~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~----~--- 764 (1022)
+++++++. .+ +.+.+|+||||+|+ +++|+||||||||||+|+|+|++ +|++|+|.+++.++ .
T Consensus 8 l~~~~l~~---~~--~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~---~p~~G~i~~~g~~i~~~~~~~~ 79 (269)
T PRK11831 8 VDMRGVSF---TR--GNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQI---APDHGEILFDGENIPAMSRSRL 79 (269)
T ss_pred EEEeCeEE---EE--CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC---CCCCceEEECCEEccccChhhH
Confidence 55455553 33 35679999999998 99999999999999999999999 99999999998654 1
Q ss_pred hhhcCceEEEcCCCCCCccccccccchHHHHhcccc-----c---hHHHHHHHH-HhcCCccccCCCcCCch-HHHHHHH
Q 001709 765 EGIAGGLCYCDSAGVNLQELTMEAARFKDEMWMGIR-----D---LSRKTDLIV-LVHNLSHKIPRYNYSSA-SGQQQPA 834 (1022)
Q Consensus 765 ~~lr~~IGyV~Q~~~~~~~lTV~~~~~~ENI~~g~~-----~---~~~~v~~~L-~v~gL~~~~~r~~~~LS-GqrQRva 834 (1022)
..+++.|+|+||+...++.+|+ .||+.++.. . ...++.+++ .+ ||.+..++++.+|| |||||++
T Consensus 80 ~~~~~~i~~v~q~~~~~~~~tv-----~enl~~~~~~~~~~~~~~~~~~~~~~l~~~-gl~~~~~~~~~~LSgGq~qrv~ 153 (269)
T PRK11831 80 YTVRKRMSMLFQSGALFTDMNV-----FDNVAYPLREHTQLPAPLLHSTVMMKLEAV-GLRGAAKLMPSELSGGMARRAA 153 (269)
T ss_pred HHHhhcEEEEecccccCCCCCH-----HHHHHHHHHHccCCCHHHHHHHHHHHHHHc-CChhhhhCChhhCCHHHHHHHH
Confidence 1246789999995444777899 999986432 1 234566778 77 99999999999999 9999999
Q ss_pred HH---------hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEec
Q 001709 835 LS---------LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINS 887 (1022)
Q Consensus 835 IA---------LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~ 887 (1022)
|| |||||||++ +|...+..+...+.+..+....++++++|
T Consensus 154 laral~~~p~lllLDEPt~~-------------LD~~~~~~l~~~l~~~~~~~g~tiiivsH 202 (269)
T PRK11831 154 LARAIALEPDLIMFDEPFVG-------------QDPITMGVLVKLISELNSALGVTCVVVSH 202 (269)
T ss_pred HHHHHhcCCCEEEEcCCCcc-------------CCHHHHHHHHHHHHHHHHhcCcEEEEEec
Confidence 99 999999997 77777777776665443333345666653
No 102
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=1.5e-26 Score=254.05 Aligned_cols=166 Identities=13% Similarity=0.116 Sum_probs=129.3
Q ss_pred eEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc--------------------------
Q 001709 713 TVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD-------------------------- 763 (1022)
Q Consensus 713 ~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~-------------------------- 763 (1022)
++|+||||+|+ +++|+||||||||||+|+|+|++ +|++|+|++++.+.
T Consensus 21 ~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~---~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (305)
T PRK13651 21 KALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALL---LPDTGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKI 97 (305)
T ss_pred cceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCC---CCCCcEEEEeceeccccccccccccccccccccccccccc
Confidence 69999999998 99999999999999999999999 99999999985431
Q ss_pred --hhhhcCceEEEcCCCC-CCccccccccchHHHHhccccc-------hHHHHHHHH-HhcCCc-cccCCCcCCch-HHH
Q 001709 764 --QEGIAGGLCYCDSAGV-NLQELTMEAARFKDEMWMGIRD-------LSRKTDLIV-LVHNLS-HKIPRYNYSSA-SGQ 830 (1022)
Q Consensus 764 --~~~lr~~IGyV~Q~~~-~~~~lTV~~~~~~ENI~~g~~~-------~~~~v~~~L-~v~gL~-~~~~r~~~~LS-Gqr 830 (1022)
...+++.||||||++. .++..|| +|||.|+... ..+++.+++ .+ ||. ++.++++.+|| |||
T Consensus 98 ~~~~~~~~~ig~v~Q~~~~~l~~~tv-----~e~i~~~~~~~~~~~~~~~~~~~~~l~~~-gL~~~~~~~~~~~LSgGqk 171 (305)
T PRK13651 98 KKIKEIRRRVGVVFQFAEYQLFEQTI-----EKDIIFGPVSMGVSKEEAKKRAAKYIELV-GLDESYLQRSPFELSGGQK 171 (305)
T ss_pred chHHHHHhceEEEeeCcccccccccH-----HHHHHhhHHHcCCCHHHHHHHHHHHHHHc-CCChhhhhCChhhCCHHHH
Confidence 1345778999999543 3556899 9999987531 345678888 87 996 78999999999 999
Q ss_pred HHHHHH---------hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCCcccccCcccccc
Q 001709 831 QQPALS---------LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCPYVMPGAVSASLS 901 (1022)
Q Consensus 831 QRvaIA---------LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~~V~~~~~~a~~l 901 (1022)
||++|| |||||||++ +|...+..+...+.+. .....++++++ |..+.+..+
T Consensus 172 qrvalA~aL~~~P~lLlLDEPt~~-------------LD~~~~~~l~~~l~~l-~~~g~tiiivt------Hd~~~~~~~ 231 (305)
T PRK13651 172 RRVALAGILAMEPDFLVFDEPTAG-------------LDPQGVKEILEIFDNL-NKQGKTIILVT------HDLDNVLEW 231 (305)
T ss_pred HHHHHHHHHHhCCCEEEEeCCCCC-------------CCHHHHHHHHHHHHHH-HHCCCEEEEEe------eCHHHHHHh
Confidence 999999 999999997 6777777766666443 44445666665 444444444
Q ss_pred cCCCCC
Q 001709 902 WGASGG 907 (1022)
Q Consensus 902 ~~~~~~ 907 (1022)
++++..
T Consensus 232 adrv~v 237 (305)
T PRK13651 232 TKRTIF 237 (305)
T ss_pred CCEEEE
Confidence 444433
No 103
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.94 E-value=1.6e-26 Score=256.76 Aligned_cols=186 Identities=13% Similarity=0.126 Sum_probs=138.8
Q ss_pred cccccCceeEEEEec--------CCCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEcccc
Q 001709 694 FIRPEGLSDVFIFCT--------SDFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEAD 762 (1022)
Q Consensus 694 ~i~~~~l~~~~~~~~--------~~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~ 762 (1022)
.+++++|+..|-... .+..++|+||||+|+ +++|+|+||||||||+++|+|++ +|++|+|+++|.+
T Consensus 8 ~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~---~p~~G~I~~~G~~ 84 (331)
T PRK15079 8 LLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLV---KATDGEVAWLGKD 84 (331)
T ss_pred eEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCC---CCCCcEEEECCEE
Confidence 466677775331100 013579999999999 99999999999999999999999 9999999999866
Q ss_pred c----h---hhhcCceEEEcCCCC--CCccccccccchHHHHhcccc---------chHHHHHHHH-HhcCCc-cccCCC
Q 001709 763 D----Q---EGIAGGLCYCDSAGV--NLQELTMEAARFKDEMWMGIR---------DLSRKTDLIV-LVHNLS-HKIPRY 822 (1022)
Q Consensus 763 ~----~---~~lr~~IGyV~Q~~~--~~~~lTV~~~~~~ENI~~g~~---------~~~~~v~~~L-~v~gL~-~~~~r~ 822 (1022)
+ . ..++++|+||||++. +++.+|| .|||.++.. ...+++.+++ .+ ||. +..+++
T Consensus 85 i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv-----~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~v-gl~~~~~~~~ 158 (331)
T PRK15079 85 LLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTI-----GEIIAEPLRTYHPKLSRQEVKDRVKAMMLKV-GLLPNLINRY 158 (331)
T ss_pred CCcCCHHHHHHHhCceEEEecCchhhcCCCCCH-----HHHHHHHHHHhccCCCHHHHHHHHHHHHHHc-CCChHHhcCC
Confidence 4 1 135678999999643 3678999 999875421 1345677888 88 994 678999
Q ss_pred cCCch-HHHHHHHHH---------hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCCccc
Q 001709 823 NYSSA-SGQQQPALS---------LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCPYVM 892 (1022)
Q Consensus 823 ~~~LS-GqrQRvaIA---------LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~~V~ 892 (1022)
+.+|| ||||||+|| |||||||++ +|...+..++..+.+..++..-++++++
T Consensus 159 p~~LSgG~~QRv~iArAL~~~P~llilDEPts~-------------LD~~~~~~i~~lL~~l~~~~~~til~iT------ 219 (331)
T PRK15079 159 PHEFSGGQCQRIGIARALILEPKLIICDEPVSA-------------LDVSIQAQVVNLLQQLQREMGLSLIFIA------ 219 (331)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCcc-------------CCHHHHHHHHHHHHHHHHHcCCEEEEEe------
Confidence 99999 999999999 999999997 7777788777766555443344666665
Q ss_pred ccCcccccccCCCCC
Q 001709 893 PGAVSASLSWGASGG 907 (1022)
Q Consensus 893 ~~~~~a~~l~~~~~~ 907 (1022)
|+...+..+++++.+
T Consensus 220 Hdl~~~~~~~dri~v 234 (331)
T PRK15079 220 HDLAVVKHISDRVLV 234 (331)
T ss_pred CCHHHHHHhCCEEEE
Confidence 444444444554443
No 104
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=1.9e-26 Score=247.09 Aligned_cols=165 Identities=18% Similarity=0.166 Sum_probs=129.9
Q ss_pred ccccCceeEEEEecCCCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc----hhhh
Q 001709 695 IRPEGLSDVFIFCTSDFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD----QEGI 767 (1022)
Q Consensus 695 i~~~~l~~~~~~~~~~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~----~~~l 767 (1022)
+.+++++ +.+ +++++|+||||+++ +++|+||||||||||+|+|+|++ +|++|+|.++|.++ ...+
T Consensus 12 l~i~~l~---~~~--~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~---~~~~G~i~~~g~~~~~~~~~~~ 83 (265)
T PRK10575 12 FALRNVS---FRV--PGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQ---PPSEGEILLDAQPLESWSSKAF 83 (265)
T ss_pred EEEeeEE---EEE--CCEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCC---CCCCCEEEECCEehhhCCHHHH
Confidence 5544444 333 34689999999999 99999999999999999999999 99999999998654 3345
Q ss_pred cCceEEEcCCCCCCccccccccchHHHHhcccc-----------chHHHHHHHH-HhcCCccccCCCcCCch-HHHHHHH
Q 001709 768 AGGLCYCDSAGVNLQELTMEAARFKDEMWMGIR-----------DLSRKTDLIV-LVHNLSHKIPRYNYSSA-SGQQQPA 834 (1022)
Q Consensus 768 r~~IGyV~Q~~~~~~~lTV~~~~~~ENI~~g~~-----------~~~~~v~~~L-~v~gL~~~~~r~~~~LS-GqrQRva 834 (1022)
++.|+|++|+...++.+|+ .||+.++.. ...++++.++ .+ +|.+..++++.+|| |||||++
T Consensus 84 ~~~i~~v~q~~~~~~~~tv-----~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~LSgG~~qrv~ 157 (265)
T PRK10575 84 ARKVAYLPQQLPAAEGMTV-----RELVAIGRYPWHGALGRFGAADREKVEEAISLV-GLKPLAHRLVDSLSGGERQRAW 157 (265)
T ss_pred hhheEEeccCCCCCCCccH-----HHHHHhCcccccccccCCCHHHHHHHHHHHHHc-CCHHHhcCCcccCCHHHHHHHH
Confidence 6789999995444777899 999987531 1234577888 77 99989999999999 9999999
Q ss_pred HH---------hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEe
Q 001709 835 LS---------LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVIN 886 (1022)
Q Consensus 835 IA---------LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~ 886 (1022)
|| |||||||++ +|...+..+...+.+..+....++++++
T Consensus 158 laral~~~p~lllLDEPt~~-------------LD~~~~~~~~~~l~~l~~~~~~tiii~s 205 (265)
T PRK10575 158 IAMLVAQDSRCLLLDEPTSA-------------LDIAHQVDVLALVHRLSQERGLTVIAVL 205 (265)
T ss_pred HHHHHhcCCCEEEEcCCccc-------------CCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 99 999999996 7777777776666544333344555554
No 105
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=1.4e-26 Score=251.32 Aligned_cols=153 Identities=12% Similarity=0.171 Sum_probs=123.4
Q ss_pred eeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc-h-------hhhcCceEEEcCCCC-
Q 001709 712 TTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD-Q-------EGIAGGLCYCDSAGV- 779 (1022)
Q Consensus 712 ~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~-~-------~~lr~~IGyV~Q~~~- 779 (1022)
.++|+||||+|+ +++|+||||||||||+|+|+|++ +|++|+|.++|.++ . ..+++.||||||++.
T Consensus 20 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~---~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~ 96 (286)
T PRK13646 20 HQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALL---KPTTGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPES 96 (286)
T ss_pred cCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC---CCCCcEEEECCEECccccccchHHHHHhheEEEecChHh
Confidence 469999999999 99999999999999999999999 99999999998654 1 246788999999543
Q ss_pred CCccccccccchHHHHhcccc----c---hHHHHHHHH-HhcCCc-cccCCCcCCch-HHHHHHHHH---------hhhc
Q 001709 780 NLQELTMEAARFKDEMWMGIR----D---LSRKTDLIV-LVHNLS-HKIPRYNYSSA-SGQQQPALS---------LLLN 840 (1022)
Q Consensus 780 ~~~~lTV~~~~~~ENI~~g~~----~---~~~~v~~~L-~v~gL~-~~~~r~~~~LS-GqrQRvaIA---------LLLD 840 (1022)
.++..|+ .|||.|+.. . ..+++.+++ .+ ||. +..++++.+|| |||||++|| ||||
T Consensus 97 ~l~~~tv-----~e~i~~~~~~~~~~~~~~~~~~~~~l~~~-gL~~~~~~~~~~~LSgGq~qrv~laraL~~~p~illlD 170 (286)
T PRK13646 97 QLFEDTV-----EREIIFGPKNFKMNLDEVKNYAHRLLMDL-GFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLD 170 (286)
T ss_pred ccchhhH-----HHHHHhhHHHcCCCHHHHHHHHHHHHHHc-CCChhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 2444699 999998643 1 345677888 77 997 68899999999 999999999 9999
Q ss_pred cccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEe
Q 001709 841 EAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVIN 886 (1022)
Q Consensus 841 EPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~ 886 (1022)
|||++ +|...+..+...+.+.......++++++
T Consensus 171 EPt~~-------------LD~~~~~~l~~~l~~l~~~~g~tvl~vt 203 (286)
T PRK13646 171 EPTAG-------------LDPQSKRQVMRLLKSLQTDENKTIILVS 203 (286)
T ss_pred CCccc-------------CCHHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 99997 7777777776666554433344666665
No 106
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.94 E-value=3.6e-26 Score=235.00 Aligned_cols=163 Identities=19% Similarity=0.153 Sum_probs=130.5
Q ss_pred CeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc---hhhhcCceEEEcCCCCCCccc
Q 001709 711 FTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD---QEGIAGGLCYCDSAGVNLQEL 784 (1022)
Q Consensus 711 ~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~---~~~lr~~IGyV~Q~~~~~~~l 784 (1022)
..++|+++||+++ +++|+||||||||||+++|+|++ +|++|+|+++|.++ ....+++|+|++|+...++.+
T Consensus 13 ~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~---~~~~G~v~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~ 89 (200)
T PRK13540 13 DQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLL---NPEKGEILFERQSIKKDLCTYQKQLCFVGHRSGINPYL 89 (200)
T ss_pred CeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCC---CCCCeeEEECCCccccCHHHHHhheEEeccccccCcCC
Confidence 4679999999998 99999999999999999999999 99999999998765 244577899999943346789
Q ss_pred cccccchHHHHhcccc--chHHHHHHHH-HhcCCccccCCCcCCch-HHHHHHHHH---------hhhccccCCChhHHH
Q 001709 785 TMEAARFKDEMWMGIR--DLSRKTDLIV-LVHNLSHKIPRYNYSSA-SGQQQPALS---------LLLNEAKSLGIPWVL 851 (1022)
Q Consensus 785 TV~~~~~~ENI~~g~~--~~~~~v~~~L-~v~gL~~~~~r~~~~LS-GqrQRvaIA---------LLLDEPTSad~~~v~ 851 (1022)
|| +||+.++.. .....+.+++ .+ ++.+..++++.+|| |||||++|| |||||||++
T Consensus 90 tv-----~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~lilDEP~~~------ 157 (200)
T PRK13540 90 TL-----RENCLYDIHFSPGAVGITELCRLF-SLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVA------ 157 (200)
T ss_pred CH-----HHHHHHHHhcCcchHHHHHHHHHc-CCchhhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcc------
Confidence 99 999988642 2344677888 77 89888899999999 999999999 999999997
Q ss_pred HHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCCcccccCc
Q 001709 852 AITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCPYVMPGAV 896 (1022)
Q Consensus 852 ~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~~V~~~~~ 896 (1022)
+|...+..+...+.+ +.+...++++++|.......+|
T Consensus 158 -------LD~~~~~~l~~~l~~-~~~~~~tiii~sh~~~~~~~~d 194 (200)
T PRK13540 158 -------LDELSLLTIITKIQE-HRAKGGAVLLTSHQDLPLNKAD 194 (200)
T ss_pred -------cCHHHHHHHHHHHHH-HHHcCCEEEEEeCCchhccccc
Confidence 677777776666654 3444456666665555554443
No 107
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.94 E-value=1.2e-26 Score=278.36 Aligned_cols=178 Identities=15% Similarity=0.121 Sum_probs=138.8
Q ss_pred ceeEEEEecCCCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc----hhhhcCceE
Q 001709 700 LSDVFIFCTSDFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD----QEGIAGGLC 772 (1022)
Q Consensus 700 l~~~~~~~~~~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~----~~~lr~~IG 772 (1022)
++++++.|..+..++|+||||+|+ .++|+|+||||||||+|+|+|++ +|++|+|.+||.++ ...+|+.||
T Consensus 454 ~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~---~p~~G~I~idg~~i~~~~~~~lr~~i~ 530 (686)
T TIGR03797 454 VDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFE---TPESGSVFYDGQDLAGLDVQAVRRQLG 530 (686)
T ss_pred EEEEEEEcCCCCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCC---CCCCCEEEECCEEcCcCCHHHHHhccE
Confidence 667666665445789999999998 99999999999999999999999 99999999998664 677899999
Q ss_pred EEcCCCCCCccccccccchHHHHhccccchHHHHHHHH-Hh----------cCCccccCCCcCCch-HHHHHHHHH----
Q 001709 773 YCDSAGVNLQELTMEAARFKDEMWMGIRDLSRKTDLIV-LV----------HNLSHKIPRYNYSSA-SGQQQPALS---- 836 (1022)
Q Consensus 773 yV~Q~~~~~~~lTV~~~~~~ENI~~g~~~~~~~v~~~L-~v----------~gL~~~~~r~~~~LS-GqrQRvaIA---- 836 (1022)
||+| ++.++..|+ +|||.++....++++.+++ .. +|++...++....|| |||||++||
T Consensus 531 ~v~Q-~~~lf~gTI-----~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll 604 (686)
T TIGR03797 531 VVLQ-NGRLMSGSI-----FENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALV 604 (686)
T ss_pred EEcc-CCccCcccH-----HHHHhcCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHh
Confidence 9999 555555899 9999998643344455555 33 234444556677899 999999999
Q ss_pred -----hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCCcccccCcccccccC
Q 001709 837 -----LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCPYVMPGAVSASLSWG 903 (1022)
Q Consensus 837 -----LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~~V~~~~~~a~~l~~ 903 (1022)
||||||||+ +|..+...+...+.+. ..|+++++|-...+..+|..+.+.+
T Consensus 605 ~~p~iLiLDEpTS~-------------LD~~te~~i~~~L~~~----~~T~IiItHr~~~i~~~D~Iivl~~ 659 (686)
T TIGR03797 605 RKPRILLFDEATSA-------------LDNRTQAIVSESLERL----KVTRIVIAHRLSTIRNADRIYVLDA 659 (686)
T ss_pred cCCCEEEEeCCccC-------------CCHHHHHHHHHHHHHh----CCeEEEEecChHHHHcCCEEEEEEC
Confidence 999999997 7777777766655332 3577888766666666676666644
No 108
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=1.9e-26 Score=248.09 Aligned_cols=181 Identities=15% Similarity=0.164 Sum_probs=135.2
Q ss_pred ccccCceeEEEEecCCCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc----hhhh
Q 001709 695 IRPEGLSDVFIFCTSDFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD----QEGI 767 (1022)
Q Consensus 695 i~~~~l~~~~~~~~~~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~----~~~l 767 (1022)
+++++++ +.+..+.+++|++|||+++ +++|+||||||||||+++|+|++ +|++|+|.++|.++ ...+
T Consensus 8 l~~~nl~---~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~---~p~~G~I~~~g~~i~~~~~~~~ 81 (271)
T PRK13632 8 IKVENVS---FSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLL---KPQSGEIKIDGITISKENLKEI 81 (271)
T ss_pred EEEEeEE---EEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC---CCCCceEEECCEecCcCCHHHH
Confidence 4544444 3443234679999999998 99999999999999999999999 99999999998664 2356
Q ss_pred cCceEEEcCCCC-CCccccccccchHHHHhcccc----c---hHHHHHHHH-HhcCCccccCCCcCCch-HHHHHHHHH-
Q 001709 768 AGGLCYCDSAGV-NLQELTMEAARFKDEMWMGIR----D---LSRKTDLIV-LVHNLSHKIPRYNYSSA-SGQQQPALS- 836 (1022)
Q Consensus 768 r~~IGyV~Q~~~-~~~~lTV~~~~~~ENI~~g~~----~---~~~~v~~~L-~v~gL~~~~~r~~~~LS-GqrQRvaIA- 836 (1022)
++.|||++|+.. .++.+|+ +||+.++.. . ..+++.+++ .+ ||.+..++++.+|| |||||++||
T Consensus 82 ~~~i~~v~q~~~~~~~~~tv-----~enl~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~LS~G~~qrl~lar 155 (271)
T PRK13632 82 RKKIGIIFQNPDNQFIGATV-----EDDIAFGLENKKVPPKKMKDIIDDLAKKV-GMEDYLDKEPQNLSGGQKQRVAIAS 155 (271)
T ss_pred hcceEEEEeCHHHhcCcccH-----HHHHHhHHHHcCCCHHHHHHHHHHHHHHc-CCHHHhhCCcccCCHHHHHHHHHHH
Confidence 788999999533 3667899 999987532 1 234577788 77 99999999999999 999999999
Q ss_pred --------hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCC-CeEEEEecCCcccccCcccccc
Q 001709 837 --------LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASP-STTEVINSCPYVMPGAVSASLS 901 (1022)
Q Consensus 837 --------LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~-~~~vVv~~~~~V~~~~~~a~~l 901 (1022)
|||||||++ +|...+..+...+.+. .... .++++++|....+..++..+.+
T Consensus 156 al~~~p~lllLDEP~~g-------------LD~~~~~~l~~~l~~~-~~~~~~tiii~sH~~~~~~~~d~v~~l 215 (271)
T PRK13632 156 VLALNPEIIIFDESTSM-------------LDPKGKREIKKIMVDL-RKTRKKTLISITHDMDEAILADKVIVF 215 (271)
T ss_pred HHHcCCCEEEEeCCccc-------------CCHHHHHHHHHHHHHH-HHhcCcEEEEEEechhHHhhCCEEEEE
Confidence 999999997 7777777766665443 3333 4556665333222234444433
No 109
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.94 E-value=3.1e-26 Score=235.89 Aligned_cols=156 Identities=18% Similarity=0.189 Sum_probs=127.4
Q ss_pred CCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc---hhhhcCceEEEcCCCCCCcc
Q 001709 710 DFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD---QEGIAGGLCYCDSAGVNLQE 783 (1022)
Q Consensus 710 ~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~---~~~lr~~IGyV~Q~~~~~~~ 783 (1022)
+.+.+|++|||+|+ +++|+|+||||||||+++|+|++ +|++|+|.+++.+. ...++++++|++|+...++.
T Consensus 11 ~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~---~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~ 87 (201)
T cd03231 11 DGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLS---PPLAGRVLLNGGPLDFQRDSIARGLLYLGHAPGIKTT 87 (201)
T ss_pred CCceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC---CCCCcEEEECCEecccccHHhhhheEEeccccccCCC
Confidence 34679999999998 99999999999999999999999 99999999998664 24467789999995444777
Q ss_pred ccccccchHHHHhcccc-chHHHHHHHH-HhcCCccccCCCcCCch-HHHHHHHHH---------hhhccccCCChhHHH
Q 001709 784 LTMEAARFKDEMWMGIR-DLSRKTDLIV-LVHNLSHKIPRYNYSSA-SGQQQPALS---------LLLNEAKSLGIPWVL 851 (1022)
Q Consensus 784 lTV~~~~~~ENI~~g~~-~~~~~v~~~L-~v~gL~~~~~r~~~~LS-GqrQRvaIA---------LLLDEPTSad~~~v~ 851 (1022)
+|+ +||+.+... ...+++++++ .+ +|.+..++++.+|| |||||++|| |||||||++
T Consensus 88 ~tv-----~e~l~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~------ 155 (201)
T cd03231 88 LSV-----LENLRFWHADHSDEQVEEALARV-GLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTA------ 155 (201)
T ss_pred cCH-----HHHHHhhcccccHHHHHHHHHHc-CChhhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCC------
Confidence 999 999987643 2456778888 77 99988999999999 999999999 999999997
Q ss_pred HHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecC
Q 001709 852 AITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSC 888 (1022)
Q Consensus 852 ~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~ 888 (1022)
+|...+..+...+.+ +.....++++++|.
T Consensus 156 -------LD~~~~~~l~~~l~~-~~~~g~tiii~sH~ 184 (201)
T cd03231 156 -------LDKAGVARFAEAMAG-HCARGGMVVLTTHQ 184 (201)
T ss_pred -------CCHHHHHHHHHHHHH-HHhCCCEEEEEecC
Confidence 677777776665543 44444566666543
No 110
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.94 E-value=9.6e-27 Score=270.82 Aligned_cols=162 Identities=21% Similarity=0.256 Sum_probs=125.8
Q ss_pred ceeEEEEecCCCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc---hhhhcCceEE
Q 001709 700 LSDVFIFCTSDFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD---QEGIAGGLCY 773 (1022)
Q Consensus 700 l~~~~~~~~~~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~---~~~lr~~IGy 773 (1022)
+++++|.|.. .+++|+|+||+++ +++|+||||||||||+|+|+|++ +|++|+|.+||.++ ..++|+.|+|
T Consensus 337 ~~~vsf~Y~~-~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~---~p~~G~I~i~g~~i~~~~~~lr~~i~~ 412 (529)
T TIGR02868 337 LRDLSFGYPG-SPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLL---DPLQGEVTLDGVSVSSLQDELRRRISV 412 (529)
T ss_pred EEEEEEecCC-CCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCC---CCCCcEEEECCEEhhhHHHHHHhheEE
Confidence 6666666643 3469999999999 99999999999999999999999 99999999998765 4567899999
Q ss_pred EcCCCCCCccccccccchHHHHhccccc-hHHHHHHHH-Hh----------cCCccccCCCcCCch-HHHHHHHHH----
Q 001709 774 CDSAGVNLQELTMEAARFKDEMWMGIRD-LSRKTDLIV-LV----------HNLSHKIPRYNYSSA-SGQQQPALS---- 836 (1022)
Q Consensus 774 V~Q~~~~~~~lTV~~~~~~ENI~~g~~~-~~~~v~~~L-~v----------~gL~~~~~r~~~~LS-GqrQRvaIA---- 836 (1022)
|+| ++.++..|+ +|||.+|.++ .++++.+++ .. +|++...++....|| |||||++||
T Consensus 413 V~Q-~~~lF~~TI-----~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall 486 (529)
T TIGR02868 413 FAQ-DAHLFDTTV-----RDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALL 486 (529)
T ss_pred Ecc-CcccccccH-----HHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHh
Confidence 999 556555899 9999998653 344555555 33 234444556677899 999999999
Q ss_pred -----hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEe
Q 001709 837 -----LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVIN 886 (1022)
Q Consensus 837 -----LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~ 886 (1022)
||||||||+ +|.++...+...+.+. ....|++++.
T Consensus 487 ~~~~iliLDE~TSa-------------LD~~te~~I~~~l~~~--~~~~TvIiIt 526 (529)
T TIGR02868 487 ADAPILLLDEPTEH-------------LDAGTESELLEDLLAA--LSGKTVVVIT 526 (529)
T ss_pred cCCCEEEEeCCccc-------------CCHHHHHHHHHHHHHh--cCCCEEEEEe
Confidence 999999997 7777777766665432 1223555555
No 111
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.94 E-value=2.4e-26 Score=238.87 Aligned_cols=154 Identities=19% Similarity=0.217 Sum_probs=120.7
Q ss_pred eEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc-h------hhhcCceEEEcCCCC--C
Q 001709 713 TVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD-Q------EGIAGGLCYCDSAGV--N 780 (1022)
Q Consensus 713 ~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~-~------~~lr~~IGyV~Q~~~--~ 780 (1022)
++|++|||+++ +++|+|||||||||||++|+|++ +|++|+|.+++.++ . ...++.++|++|+.. .
T Consensus 19 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~---~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 95 (228)
T cd03257 19 KALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLL---KPTSGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSL 95 (228)
T ss_pred eeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCC---CCCCceEEECCEEccccchhhHHHhhccEEEEecCchhhc
Confidence 79999999998 99999999999999999999999 99999999998654 1 245678999999542 3
Q ss_pred CccccccccchHHHHhcccc----c-h---HHH-HHHHH-HhcCCc-cccCCCcCCch-HHHHHHHHH---------hhh
Q 001709 781 LQELTMEAARFKDEMWMGIR----D-L---SRK-TDLIV-LVHNLS-HKIPRYNYSSA-SGQQQPALS---------LLL 839 (1022)
Q Consensus 781 ~~~lTV~~~~~~ENI~~g~~----~-~---~~~-v~~~L-~v~gL~-~~~~r~~~~LS-GqrQRvaIA---------LLL 839 (1022)
++.+|+ +||+.++.. . . .+. +.+++ .+ ++. +..++++.+|| |||||++|| |||
T Consensus 96 ~~~~tv-----~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllL 169 (228)
T cd03257 96 NPRMTI-----GEQIAEPLRIHGKLSKKEARKEAVLLLLVGV-GLPEEVLNRYPHELSGGQRQRVAIARALALNPKLLIA 169 (228)
T ss_pred CCcCCH-----HHHHHHHHHhccCCcHHHHHHHHHHHHHHHC-CCChhHhhCCchhcCHHHHHHHHHHHHHhcCCCEEEe
Confidence 567899 999976432 1 1 112 24667 77 885 68899999999 999999999 999
Q ss_pred ccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecC
Q 001709 840 NEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSC 888 (1022)
Q Consensus 840 DEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~ 888 (1022)
||||++ +|...+..+...+.+..++...++++++|.
T Consensus 170 DEPt~~-------------LD~~~~~~l~~~l~~~~~~~~~tii~~sH~ 205 (228)
T cd03257 170 DEPTSA-------------LDVSVQAQILDLLKKLQEELGLTLLFITHD 205 (228)
T ss_pred cCCCCC-------------CCHHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 999996 777777777766655433324466666533
No 112
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.94 E-value=1.6e-26 Score=252.82 Aligned_cols=168 Identities=16% Similarity=0.147 Sum_probs=129.6
Q ss_pred CCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc---hhhhcCceEEEcCCCCCCcc
Q 001709 710 DFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD---QEGIAGGLCYCDSAGVNLQE 783 (1022)
Q Consensus 710 ~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~---~~~lr~~IGyV~Q~~~~~~~ 783 (1022)
+...+|+||||+++ +++|+||||||||||||+|+|++ +|++|+|.++|.++ ...+++.+||+||+...+++
T Consensus 13 ~~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~---~~~~G~i~i~g~~~~~~~~~~~~~ig~~~q~~~l~~~ 89 (301)
T TIGR03522 13 GTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYL---PPDSGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLD 89 (301)
T ss_pred CCEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCC---CCCceEEEECCEEcccChHHHHhceEEecCCCCCCCC
Confidence 35679999999999 99999999999999999999999 99999999998765 33567889999995445788
Q ss_pred ccccccchHHHHhcccc-------chHHHHHHHH-HhcCCccccCCCcCCch-HHHHHHHHH---------hhhccccCC
Q 001709 784 LTMEAARFKDEMWMGIR-------DLSRKTDLIV-LVHNLSHKIPRYNYSSA-SGQQQPALS---------LLLNEAKSL 845 (1022)
Q Consensus 784 lTV~~~~~~ENI~~g~~-------~~~~~v~~~L-~v~gL~~~~~r~~~~LS-GqrQRvaIA---------LLLDEPTSa 845 (1022)
+|+ .||+.+... ...+++++++ .+ ||.+..++++..|| |||||++|| |||||||++
T Consensus 90 ~tv-----~e~l~~~~~~~~~~~~~~~~~~~~~l~~~-gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~lliLDEPt~g 163 (301)
T TIGR03522 90 MYV-----REYLQFIAGIYGMKGQLLKQRVEEMIELV-GLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTG 163 (301)
T ss_pred CcH-----HHHHHHHHHHcCCCHHHHHHHHHHHHHHC-CCchHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence 999 999976432 1245678888 77 99999999999999 999999999 999999997
Q ss_pred ChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCC-cccccCcccccc
Q 001709 846 GIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCP-YVMPGAVSASLS 901 (1022)
Q Consensus 846 d~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~-~V~~~~~~a~~l 901 (1022)
+|...+..+...+. .+.. ..++++++|.. .+...++..+.+
T Consensus 164 -------------LD~~~~~~l~~~l~-~~~~-~~tiii~sH~l~~~~~~~d~i~~l 205 (301)
T TIGR03522 164 -------------LDPNQLVEIRNVIK-NIGK-DKTIILSTHIMQEVEAICDRVIII 205 (301)
T ss_pred -------------CCHHHHHHHHHHHH-HhcC-CCEEEEEcCCHHHHHHhCCEEEEE
Confidence 66666766666553 3333 33444443222 233334444443
No 113
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=2.3e-26 Score=243.74 Aligned_cols=165 Identities=17% Similarity=0.176 Sum_probs=128.0
Q ss_pred ccccCceeEEEEecCCCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc----hhh-
Q 001709 695 IRPEGLSDVFIFCTSDFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD----QEG- 766 (1022)
Q Consensus 695 i~~~~l~~~~~~~~~~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~----~~~- 766 (1022)
+++++++. .+ +.+++|++|||+++ +++|+||||||||||+++|+|++ +|++|+|.+++.++ ...
T Consensus 6 l~~~~l~~---~~--~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~---~~~~G~i~~~g~~~~~~~~~~~ 77 (255)
T PRK11300 6 LSVSGLMM---RF--GGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFY---KPTGGTILLRGQHIEGLPGHQI 77 (255)
T ss_pred EEEeeEEE---EE--CCEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCc---CCCcceEEECCEECCCCCHHHH
Confidence 45444553 33 34689999999998 99999999999999999999999 99999999998654 122
Q ss_pred hcCceEEEcCCCCCCccccccccchHHHHhcccc-------------------c---hHHHHHHHH-HhcCCccccCCCc
Q 001709 767 IAGGLCYCDSAGVNLQELTMEAARFKDEMWMGIR-------------------D---LSRKTDLIV-LVHNLSHKIPRYN 823 (1022)
Q Consensus 767 lr~~IGyV~Q~~~~~~~lTV~~~~~~ENI~~g~~-------------------~---~~~~v~~~L-~v~gL~~~~~r~~ 823 (1022)
.+.+++|+||+...++.+|+ +||+.++.. . ..+.+.+++ .+ ||.+..++++
T Consensus 78 ~~~~i~~~~q~~~~~~~~tv-----~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-gl~~~~~~~~ 151 (255)
T PRK11300 78 ARMGVVRTFQHVRLFREMTV-----IENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERV-GLLEHANRQA 151 (255)
T ss_pred HhcCeEEeccCcccCCCCcH-----HHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhC-ChhhhhhCCh
Confidence 34569999995545788999 999987521 0 123566777 77 9999999999
Q ss_pred CCch-HHHHHHHHH---------hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEe
Q 001709 824 YSSA-SGQQQPALS---------LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVIN 886 (1022)
Q Consensus 824 ~~LS-GqrQRvaIA---------LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~ 886 (1022)
.+|| |||||++|| |||||||++ +|...+..+...+.+..++...++++++
T Consensus 152 ~~LS~G~~qrv~la~al~~~p~llllDEPt~~-------------LD~~~~~~l~~~L~~~~~~~~~tii~~s 211 (255)
T PRK11300 152 GNLAYGQQRRLEIARCMVTQPEILMLDEPAAG-------------LNPKETKELDELIAELRNEHNVTVLLIE 211 (255)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEcCCccC-------------CCHHHHHHHHHHHHHHHhhcCCEEEEEe
Confidence 9999 999999999 999999997 7777777777666554333234555554
No 114
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.94 E-value=8.1e-27 Score=247.11 Aligned_cols=178 Identities=21% Similarity=0.238 Sum_probs=139.3
Q ss_pred ccccCceeEEEEecCCCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc-----hhh
Q 001709 695 IRPEGLSDVFIFCTSDFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD-----QEG 766 (1022)
Q Consensus 695 i~~~~l~~~~~~~~~~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~-----~~~ 766 (1022)
+.++++++.| ++..|++||||+|+ +++||||||||||||+|+|+|+| +|++|+|.++|.++ ...
T Consensus 5 L~v~~l~k~F-----GGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~---~P~~G~v~~~G~~it~l~p~~i 76 (250)
T COG0411 5 LEVRGLSKRF-----GGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFY---KPSSGTVIFRGRDITGLPPHRI 76 (250)
T ss_pred eeeccceeec-----CCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccc---cCCCceEEECCcccCCCCHHHH
Confidence 4456777644 78899999999999 99999999999999999999999 99999999998775 334
Q ss_pred hcCceEEEcCCCCCCccccccccchHHHHhcccc-------------------chHHHHHHHH-HhcCCccccCCCcCCc
Q 001709 767 IAGGLCYCDSAGVNLQELTMEAARFKDEMWMGIR-------------------DLSRKTDLIV-LVHNLSHKIPRYNYSS 826 (1022)
Q Consensus 767 lr~~IGyV~Q~~~~~~~lTV~~~~~~ENI~~g~~-------------------~~~~~v~~~L-~v~gL~~~~~r~~~~L 826 (1022)
.+.+|+.-||+...|++||| .||+..+.. ...+++.++| .+ ||.+.++++..+|
T Consensus 77 ar~Gi~RTFQ~~rlF~~lTV-----lENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~v-gL~~~a~~~A~~L 150 (250)
T COG0411 77 ARLGIARTFQITRLFPGLTV-----LENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFV-GLGELADRPAGNL 150 (250)
T ss_pred HhccceeecccccccCCCcH-----HHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHc-CCchhhcchhhcC
Confidence 57889999996555999999 999988632 1456788888 77 9999999999999
Q ss_pred h-HHHHHHHHH---------hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCC-eEEEE-ecCCccccc
Q 001709 827 A-SGQQQPALS---------LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPS-TTEVI-NSCPYVMPG 894 (1022)
Q Consensus 827 S-GqrQRvaIA---------LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~-~~vVv-~~~~~V~~~ 894 (1022)
| |||+|+.|| ||||||.++ +.+.+...+...+ +.+....+ ++++| |..+.|+..
T Consensus 151 syG~qR~LEIArALa~~P~lLLLDEPaAG-------------ln~~e~~~l~~~i-~~i~~~~g~tillIEHdM~~Vm~l 216 (250)
T COG0411 151 SYGQQRRLEIARALATQPKLLLLDEPAAG-------------LNPEETEELAELI-RELRDRGGVTILLIEHDMKLVMGL 216 (250)
T ss_pred ChhHhHHHHHHHHHhcCCCEEEecCccCC-------------CCHHHHHHHHHHH-HHHHhcCCcEEEEEEeccHHHhhh
Confidence 9 999999999 999999997 4445555555444 44444444 44444 555555555
Q ss_pred Cccccc
Q 001709 895 AVSASL 900 (1022)
Q Consensus 895 ~~~a~~ 900 (1022)
+|..+.
T Consensus 217 ~dri~V 222 (250)
T COG0411 217 ADRIVV 222 (250)
T ss_pred ccEEEe
Confidence 444443
No 115
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.94 E-value=3.3e-26 Score=235.91 Aligned_cols=155 Identities=19% Similarity=0.125 Sum_probs=126.4
Q ss_pred CCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc---hhhhcCceEEEcCCCCCCcc
Q 001709 710 DFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD---QEGIAGGLCYCDSAGVNLQE 783 (1022)
Q Consensus 710 ~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~---~~~lr~~IGyV~Q~~~~~~~ 783 (1022)
+..++|+||||+|+ +++|+||||||||||+++|+|++ +|++|+|.+++.++ ....++.++|++|....++.
T Consensus 12 ~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~---~p~~G~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (204)
T PRK13538 12 DERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLA---RPDAGEVLWQGEPIRRQRDEYHQDLLYLGHQPGIKTE 88 (204)
T ss_pred CCEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCC---CCCCcEEEECCEEcccchHHhhhheEEeCCccccCcC
Confidence 34679999999998 99999999999999999999999 99999999998664 23456789999995444777
Q ss_pred ccccccchHHHHhcccc----chHHHHHHHH-HhcCCccccCCCcCCch-HHHHHHHHH---------hhhccccCCChh
Q 001709 784 LTMEAARFKDEMWMGIR----DLSRKTDLIV-LVHNLSHKIPRYNYSSA-SGQQQPALS---------LLLNEAKSLGIP 848 (1022)
Q Consensus 784 lTV~~~~~~ENI~~g~~----~~~~~v~~~L-~v~gL~~~~~r~~~~LS-GqrQRvaIA---------LLLDEPTSad~~ 848 (1022)
+|+ .||+.++.. ...+++++++ .+ ||.+..++++.+|| |||||++|| |||||||++
T Consensus 89 ~tv-----~e~l~~~~~~~~~~~~~~~~~~l~~~-gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~--- 159 (204)
T PRK13538 89 LTA-----LENLRFYQRLHGPGDDEALWEALAQV-GLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTA--- 159 (204)
T ss_pred CcH-----HHHHHHHHHhcCccHHHHHHHHHHHc-CCHHHhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcc---
Confidence 999 999987643 2345678888 87 99988999999999 999999999 999999996
Q ss_pred HHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEec
Q 001709 849 WVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINS 887 (1022)
Q Consensus 849 ~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~ 887 (1022)
+|...+..+...+.+ +.....++++++|
T Consensus 160 ----------LD~~~~~~l~~~l~~-~~~~~~tiii~sh 187 (204)
T PRK13538 160 ----------IDKQGVARLEALLAQ-HAEQGGMVILTTH 187 (204)
T ss_pred ----------CCHHHHHHHHHHHHH-HHHCCCEEEEEec
Confidence 677777776655543 4444456666653
No 116
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.94 E-value=3.8e-26 Score=234.21 Aligned_cols=155 Identities=14% Similarity=0.103 Sum_probs=125.1
Q ss_pred CCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc---hhhhcCceEEEcCCCCCCcc
Q 001709 710 DFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD---QEGIAGGLCYCDSAGVNLQE 783 (1022)
Q Consensus 710 ~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~---~~~lr~~IGyV~Q~~~~~~~ 783 (1022)
+.+++|++|||+++ +++|+||||||||||+|+|+|++ +|++|+|.+++.++ ....++.++|++|+...++.
T Consensus 11 ~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~---~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~ 87 (198)
T TIGR01189 11 GERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLL---RPDSGEVRWNGTALAEQRDEPHRNILYLGHLPGLKPE 87 (198)
T ss_pred CCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC---CCCccEEEECCEEcccchHHhhhheEEeccCcccccC
Confidence 35689999999998 99999999999999999999999 99999999998664 23346789999995444777
Q ss_pred ccccccchHHHHhcccc---chHHHHHHHH-HhcCCccccCCCcCCch-HHHHHHHHH---------hhhccccCCChhH
Q 001709 784 LTMEAARFKDEMWMGIR---DLSRKTDLIV-LVHNLSHKIPRYNYSSA-SGQQQPALS---------LLLNEAKSLGIPW 849 (1022)
Q Consensus 784 lTV~~~~~~ENI~~g~~---~~~~~v~~~L-~v~gL~~~~~r~~~~LS-GqrQRvaIA---------LLLDEPTSad~~~ 849 (1022)
+|+ .||+.+... ...+++.+++ .+ ||.+..++++.+|| |||||++|| |||||||++
T Consensus 88 ~tv-----~~~l~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~---- 157 (198)
T TIGR01189 88 LSA-----LENLHFWAAIHGGAQRTIEDALAAV-GLTGFEDLPAAQLSAGQQRRLALARLWLSRAPLWILDEPTTA---- 157 (198)
T ss_pred CcH-----HHHHHHHHHHcCCcHHHHHHHHHHc-CCHHHhcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcC----
Confidence 999 999976532 1234677888 77 99999999999999 999999999 999999996
Q ss_pred HHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEec
Q 001709 850 VLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINS 887 (1022)
Q Consensus 850 v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~ 887 (1022)
+|...+..+...+.+ +.....++++++|
T Consensus 158 ---------LD~~~~~~l~~~l~~-~~~~~~tii~~sH 185 (198)
T TIGR01189 158 ---------LDKAGVALLAGLLRA-HLARGGIVLLTTH 185 (198)
T ss_pred ---------CCHHHHHHHHHHHHH-HHhCCCEEEEEEc
Confidence 677766666655544 4444456666653
No 117
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.94 E-value=2.5e-26 Score=241.71 Aligned_cols=153 Identities=15% Similarity=0.201 Sum_probs=125.0
Q ss_pred CeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc-h-----hhhcCceEEEcCCCCCC
Q 001709 711 FTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD-Q-----EGIAGGLCYCDSAGVNL 781 (1022)
Q Consensus 711 ~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~-~-----~~lr~~IGyV~Q~~~~~ 781 (1022)
..++|+|+||+++ +++|+||||||||||+++|+|++ +|++|+|.++|.++ . ..+++.++|++|+...+
T Consensus 13 ~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~---~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 89 (240)
T PRK09493 13 PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLE---EITSGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLF 89 (240)
T ss_pred CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC---CCCceEEEECCEECCcCChhHHHHhhceEEEecccccC
Confidence 4679999999998 99999999999999999999999 99999999998654 1 24567899999954447
Q ss_pred ccccccccchHHHHhcccc-----c---hHHHHHHHH-HhcCCccccCCCcCCch-HHHHHHHHH---------hhhccc
Q 001709 782 QELTMEAARFKDEMWMGIR-----D---LSRKTDLIV-LVHNLSHKIPRYNYSSA-SGQQQPALS---------LLLNEA 842 (1022)
Q Consensus 782 ~~lTV~~~~~~ENI~~g~~-----~---~~~~v~~~L-~v~gL~~~~~r~~~~LS-GqrQRvaIA---------LLLDEP 842 (1022)
+.+|+ +||+.++.. . ..+++.+++ .+ ||.+..++++.+|| |||||++|| ||||||
T Consensus 90 ~~~tv-----~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~-gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP 163 (240)
T PRK09493 90 PHLTA-----LENVMFGPLRVRGASKEEAEKQARELLAKV-GLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEP 163 (240)
T ss_pred CCCcH-----HHHHHhHHHHhcCCCHHHHHHHHHHHHHHc-CChHHHhcChhhcCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 77899 999987531 1 234577888 77 99988999999999 999999999 999999
Q ss_pred cCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEe
Q 001709 843 KSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVIN 886 (1022)
Q Consensus 843 TSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~ 886 (1022)
|++ +|...+..+...+. .+.....++++++
T Consensus 164 ~~~-------------LD~~~~~~l~~~l~-~~~~~~~tiii~s 193 (240)
T PRK09493 164 TSA-------------LDPELRHEVLKVMQ-DLAEEGMTMVIVT 193 (240)
T ss_pred ccc-------------CCHHHHHHHHHHHH-HHHHcCCEEEEEe
Confidence 996 77777777776554 4444445566665
No 118
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.94 E-value=2e-26 Score=257.62 Aligned_cols=148 Identities=14% Similarity=0.200 Sum_probs=122.1
Q ss_pred eeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc-h-------hhhcCceEEEcCCCCCCcccc
Q 001709 717 EVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD-Q-------EGIAGGLCYCDSAGVNLQELT 785 (1022)
Q Consensus 717 dVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~-~-------~~lr~~IGyV~Q~~~~~~~lT 785 (1022)
+|||+++ +++|+||||||||||||+|+|++ +|++|+|.++|.++ . ...++.|+||||+...|+++|
T Consensus 15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~---~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~t 91 (354)
T TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLT---RPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLS 91 (354)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCC---CCCceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCc
Confidence 8999998 99999999999999999999999 99999999998654 1 134678999999555588899
Q ss_pred ccccchHHHHhccccc-----hHHHHHHHH-HhcCCccccCCCcCCch-HHHHHHHHH---------hhhccccCCChhH
Q 001709 786 MEAARFKDEMWMGIRD-----LSRKTDLIV-LVHNLSHKIPRYNYSSA-SGQQQPALS---------LLLNEAKSLGIPW 849 (1022)
Q Consensus 786 V~~~~~~ENI~~g~~~-----~~~~v~~~L-~v~gL~~~~~r~~~~LS-GqrQRvaIA---------LLLDEPTSad~~~ 849 (1022)
| +||+.|+... ..+++++++ .+ ||.+..++++.+|| |||||++|| |||||||++
T Consensus 92 v-----~enl~~~~~~~~~~~~~~~~~~~l~~~-gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~lllLDEPts~---- 161 (354)
T TIGR02142 92 V-----RGNLRYGMKRARPSERRISFERVIELL-GIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAA---- 161 (354)
T ss_pred H-----HHHHHHHhhccChhHHHHHHHHHHHHc-CChhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcC----
Confidence 9 9999987541 234678888 77 99999999999999 999999999 999999997
Q ss_pred HHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEe
Q 001709 850 VLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVIN 886 (1022)
Q Consensus 850 v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~ 886 (1022)
+|...+..+...+.+..+....++++++
T Consensus 162 ---------LD~~~~~~l~~~L~~l~~~~g~tiiivt 189 (354)
T TIGR02142 162 ---------LDDPRKYEILPYLERLHAEFGIPILYVS 189 (354)
T ss_pred ---------CCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 7777777777666554443344566665
No 119
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=2.8e-26 Score=249.37 Aligned_cols=166 Identities=11% Similarity=0.098 Sum_probs=129.5
Q ss_pred eEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc--------hhhhcCceEEEcCCCC-C
Q 001709 713 TVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD--------QEGIAGGLCYCDSAGV-N 780 (1022)
Q Consensus 713 ~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~--------~~~lr~~IGyV~Q~~~-~ 780 (1022)
.+|+||||+|+ +++|+||||||||||+|+|+|++ +|++|+|+++|.++ ....++.||||||++. .
T Consensus 20 ~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~---~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~ 96 (288)
T PRK13643 20 RALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLL---QPTEGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQ 96 (288)
T ss_pred cceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCC---CCCCcEEEECCEECccccccccHHHHHhhEEEEecCcchh
Confidence 59999999998 99999999999999999999999 99999999998553 2346788999999543 3
Q ss_pred CccccccccchHHHHhccccc-------hHHHHHHHH-HhcCCc-cccCCCcCCch-HHHHHHHHH---------hhhcc
Q 001709 781 LQELTMEAARFKDEMWMGIRD-------LSRKTDLIV-LVHNLS-HKIPRYNYSSA-SGQQQPALS---------LLLNE 841 (1022)
Q Consensus 781 ~~~lTV~~~~~~ENI~~g~~~-------~~~~v~~~L-~v~gL~-~~~~r~~~~LS-GqrQRvaIA---------LLLDE 841 (1022)
++..|| .||+.|+... ..+++.+++ .+ ||. ++.++.+.+|| |||||++|| |||||
T Consensus 97 l~~~tv-----~~~l~~~~~~~~~~~~~~~~~~~~~l~~~-~L~~~~~~~~~~~LSgGqkqrvaiA~aL~~~p~illLDE 170 (288)
T PRK13643 97 LFEETV-----LKDVAFGPQNFGIPKEKAEKIAAEKLEMV-GLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDE 170 (288)
T ss_pred cccchH-----HHHHHhHHHHcCCCHHHHHHHHHHHHHHc-CCChhhccCCcccCCHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 444799 9999987531 345677888 77 996 58899999999 999999999 99999
Q ss_pred ccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCCcccccCcccccccCCCCC
Q 001709 842 AKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCPYVMPGAVSASLSWGASGG 907 (1022)
Q Consensus 842 PTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~~V~~~~~~a~~l~~~~~~ 907 (1022)
||++ +|...+..+...+. .+.....++++++ |+.+.+..+++++..
T Consensus 171 Pt~g-------------LD~~~~~~l~~~l~-~l~~~g~til~vt------Hd~~~~~~~~dri~~ 216 (288)
T PRK13643 171 PTAG-------------LDPKARIEMMQLFE-SIHQSGQTVVLVT------HLMDDVADYADYVYL 216 (288)
T ss_pred CccC-------------CCHHHHHHHHHHHH-HHHHCCCEEEEEe------cCHHHHHHhCCEEEE
Confidence 9997 77777777776554 4444444666665 444444444555443
No 120
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.94 E-value=3.8e-26 Score=238.66 Aligned_cols=180 Identities=15% Similarity=0.168 Sum_probs=136.5
Q ss_pred ceeEEEEecCC--CeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCC---CCceEEEEccccc-hhhhcCc
Q 001709 700 LSDVFIFCTSD--FTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVR---TINSGNLDAEADD-QEGIAGG 770 (1022)
Q Consensus 700 l~~~~~~~~~~--~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~---PtsG~I~idg~~~-~~~lr~~ 770 (1022)
+.++.+.+..+ .+++|+|+||+++ +++|+||||||||||+|+|+|++ + |++|+|.+++.++ ....+++
T Consensus 6 ~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~---~~~~~~~G~i~~~g~~~~~~~~~~~ 82 (226)
T cd03234 6 WWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRV---EGGGTTSGQILFNGQPRKPDQFQKC 82 (226)
T ss_pred eecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCcc---CCCCCCceEEEECCEECChHHhccc
Confidence 44444555433 3689999999998 99999999999999999999999 8 8999999998776 4456788
Q ss_pred eEEEcCCCCCCccccccccchHHHHhcccc----c------hHHHHHH-HH-HhcCCccccCCCcCCch-HHHHHHHHH-
Q 001709 771 LCYCDSAGVNLQELTMEAARFKDEMWMGIR----D------LSRKTDL-IV-LVHNLSHKIPRYNYSSA-SGQQQPALS- 836 (1022)
Q Consensus 771 IGyV~Q~~~~~~~lTV~~~~~~ENI~~g~~----~------~~~~v~~-~L-~v~gL~~~~~r~~~~LS-GqrQRvaIA- 836 (1022)
|+|+||+...|+.+|+ +||+.++.. . ..+++++ .+ .+ ++.+..++.+.+|| |||||++||
T Consensus 83 i~~~~q~~~~~~~~tv-----~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~LS~G~~qrl~lar 156 (226)
T cd03234 83 VAYVRQDDILLPGLTV-----RETLTYTAILRLPRKSSDAIRKKRVEDVLLRDL-ALTRIGGNLVKGISGGERRRVSIAV 156 (226)
T ss_pred EEEeCCCCccCcCCcH-----HHHHHHHHHhhcccccchHHHHHHHHHHHHHhh-cchhhhcccccCcCHHHHHHHHHHH
Confidence 9999995445888899 999987532 0 1123444 66 77 88888899999999 999999999
Q ss_pred --------hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCC--cccccCccccccc
Q 001709 837 --------LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCP--YVMPGAVSASLSW 902 (1022)
Q Consensus 837 --------LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~--~V~~~~~~a~~l~ 902 (1022)
|||||||++ +|...+..+...+.+ +.....++++++|.. .+...++..+.+.
T Consensus 157 al~~~p~illlDEP~~g-------------LD~~~~~~~~~~l~~-~~~~~~tiii~sh~~~~~~~~~~d~i~~l~ 218 (226)
T cd03234 157 QLLWDPKVLILDEPTSG-------------LDSFTALNLVSTLSQ-LARRNRIVILTIHQPRSDLFRLFDRILLLS 218 (226)
T ss_pred HHHhCCCEEEEeCCCcC-------------CCHHHHHHHHHHHHH-HHHCCCEEEEEecCCCHHHHHhCCEEEEEe
Confidence 999999997 777777776665543 444444666665443 4555555555443
No 121
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=4.3e-26 Score=244.85 Aligned_cols=169 Identities=17% Similarity=0.220 Sum_probs=131.2
Q ss_pred ccccCceeEEEEecCCCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc----hhhh
Q 001709 695 IRPEGLSDVFIFCTSDFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD----QEGI 767 (1022)
Q Consensus 695 i~~~~l~~~~~~~~~~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~----~~~l 767 (1022)
+++++++ +.+.....++|+|+||+|+ +++|+||||||||||+|+|+|++ +|++|+|.++|.++ ...+
T Consensus 8 l~i~~l~---~~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~---~~~~G~i~~~g~~~~~~~~~~~ 81 (269)
T PRK13648 8 IVFKNVS---FQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIE---KVKSGEIFYNNQAITDDNFEKL 81 (269)
T ss_pred EEEEEEE---EEcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC---CCCceEEEECCEECCcCCHHHH
Confidence 4544444 3433222469999999998 99999999999999999999999 99999999998654 3456
Q ss_pred cCceEEEcCCCC-CCccccccccchHHHHhccccc-------hHHHHHHHH-HhcCCccccCCCcCCch-HHHHHHHHH-
Q 001709 768 AGGLCYCDSAGV-NLQELTMEAARFKDEMWMGIRD-------LSRKTDLIV-LVHNLSHKIPRYNYSSA-SGQQQPALS- 836 (1022)
Q Consensus 768 r~~IGyV~Q~~~-~~~~lTV~~~~~~ENI~~g~~~-------~~~~v~~~L-~v~gL~~~~~r~~~~LS-GqrQRvaIA- 836 (1022)
++.|+|++|++. .++..|+ .+|+.++... ..+++.+++ .+ ++.+..++++.+|| |||||++||
T Consensus 82 ~~~i~~v~q~~~~~~~~~~v-----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~LS~G~~qrl~lar 155 (269)
T PRK13648 82 RKHIGIVFQNPDNQFVGSIV-----KYDVAFGLENHAVPYDEMHRRVSEALKQV-DMLERADYEPNALSGGQKQRVAIAG 155 (269)
T ss_pred HhheeEEEeChHHhcccccH-----HHHHHhhHHhcCCCHHHHHHHHHHHHHHc-CCchhhhCCcccCCHHHHHHHHHHH
Confidence 788999999543 3677899 9999876431 234567778 77 99999999999999 999999999
Q ss_pred --------hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecC
Q 001709 837 --------LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSC 888 (1022)
Q Consensus 837 --------LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~ 888 (1022)
|||||||++ +|...+..+...+.+..+....++++++|.
T Consensus 156 al~~~p~lllLDEPt~~-------------LD~~~~~~l~~~L~~~~~~~~~tiiivtH~ 202 (269)
T PRK13648 156 VLALNPSVIILDEATSM-------------LDPDARQNLLDLVRKVKSEHNITIISITHD 202 (269)
T ss_pred HHHcCCCEEEEeCCccc-------------CCHHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 999999997 777777777776655433334466666533
No 122
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.94 E-value=6.4e-26 Score=237.38 Aligned_cols=180 Identities=13% Similarity=0.099 Sum_probs=134.8
Q ss_pred cccccCceeEEEEecCCCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc----hhh
Q 001709 694 FIRPEGLSDVFIFCTSDFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD----QEG 766 (1022)
Q Consensus 694 ~i~~~~l~~~~~~~~~~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~----~~~ 766 (1022)
.+.+++++. .+ +++++++||||+|+ +++|+||||||||||+++|+|++ +|++|+|.+++.++ ...
T Consensus 7 ~i~~~~l~~---~~--~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~---~~~~G~i~~~g~~~~~~~~~~ 78 (225)
T PRK10247 7 LLQLQNVGY---LA--GDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLI---SPTSGTLLFEGEDISTLKPEI 78 (225)
T ss_pred eEEEeccEE---ee--CCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhccc---CCCCCeEEECCEEcCcCCHHH
Confidence 355555553 32 34679999999998 99999999999999999999999 99999999998553 334
Q ss_pred hcCceEEEcCCCCCCccccccccchHHHHhcccc-----chHHHHHHHH-HhcCCc-cccCCCcCCch-HHHHHHHHH--
Q 001709 767 IAGGLCYCDSAGVNLQELTMEAARFKDEMWMGIR-----DLSRKTDLIV-LVHNLS-HKIPRYNYSSA-SGQQQPALS-- 836 (1022)
Q Consensus 767 lr~~IGyV~Q~~~~~~~lTV~~~~~~ENI~~g~~-----~~~~~v~~~L-~v~gL~-~~~~r~~~~LS-GqrQRvaIA-- 836 (1022)
.++.|+|+||+...++ .|+ +||+.++.. ...+++.+++ .+ +|. +..++++.+|| |||||++||
T Consensus 79 ~~~~i~~~~q~~~l~~-~tv-----~enl~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~~LS~G~~qrv~lara 151 (225)
T PRK10247 79 YRQQVSYCAQTPTLFG-DTV-----YDNLIFPWQIRNQQPDPAIFLDDLERF-ALPDTILTKNIAELSGGEKQRISLIRN 151 (225)
T ss_pred HHhccEEEeccccccc-ccH-----HHHHHhHHhhcCCChHHHHHHHHHHHc-CCChHHhcCCcccCCHHHHHHHHHHHH
Confidence 5678999999533355 699 999986421 1345567788 77 996 57899999999 999999999
Q ss_pred -------hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCCcccccCcccccc
Q 001709 837 -------LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCPYVMPGAVSASLS 901 (1022)
Q Consensus 837 -------LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~~V~~~~~~a~~l 901 (1022)
|||||||++ +|...+..+...+.+..+....++++++|....+..++..+.+
T Consensus 152 l~~~p~llllDEPt~~-------------LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~~~d~i~~l 210 (225)
T PRK10247 152 LQFMPKVLLLDEITSA-------------LDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINHADKVITL 210 (225)
T ss_pred HhcCCCEEEEeCCccc-------------CCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHHhCCEEEEE
Confidence 999999996 6777777666655443333345666666444443445555444
No 123
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.94 E-value=3.7e-26 Score=244.83 Aligned_cols=154 Identities=11% Similarity=0.125 Sum_probs=124.8
Q ss_pred CeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc----hhhhcCceEEEcCCCCCCcc
Q 001709 711 FTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD----QEGIAGGLCYCDSAGVNLQE 783 (1022)
Q Consensus 711 ~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~----~~~lr~~IGyV~Q~~~~~~~ 783 (1022)
..++|++|||+++ +++|+||||||||||||+|+|++ +|++|+|.++|.++ ...+++.|+|+||+...++.
T Consensus 19 ~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~---~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~ 95 (265)
T PRK10253 19 KYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLM---TPAHGHVWLDGEHIQHYASKEVARRIGLLAQNATTPGD 95 (265)
T ss_pred CEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCC---CCCCcEEEECCEEhhhCCHHHHhhheEEeeccCcCCCC
Confidence 4679999999999 99999999999999999999999 99999999998654 23456789999995444777
Q ss_pred ccccccchHHHHhcccc-----------chHHHHHHHH-HhcCCccccCCCcCCch-HHHHHHHHH---------hhhcc
Q 001709 784 LTMEAARFKDEMWMGIR-----------DLSRKTDLIV-LVHNLSHKIPRYNYSSA-SGQQQPALS---------LLLNE 841 (1022)
Q Consensus 784 lTV~~~~~~ENI~~g~~-----------~~~~~v~~~L-~v~gL~~~~~r~~~~LS-GqrQRvaIA---------LLLDE 841 (1022)
+|+ +||+.++.. ...+++++++ .+ ||.+..++++.+|| |||||++|| |||||
T Consensus 96 ~tv-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDE 169 (265)
T PRK10253 96 ITV-----QELVARGRYPHQPLFTRWRKEDEEAVTKAMQAT-GITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDE 169 (265)
T ss_pred CcH-----HHHHHhCcccccccccCCCHHHHHHHHHHHHHc-CCHHHhcCCcccCChHHHHHHHHHHHHhcCCCEEEEeC
Confidence 899 999987521 1234677788 77 99999999999999 999999999 99999
Q ss_pred ccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEe
Q 001709 842 AKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVIN 886 (1022)
Q Consensus 842 PTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~ 886 (1022)
||++ +|...+..+...+.+..+....++++++
T Consensus 170 Pt~g-------------LD~~~~~~l~~~L~~l~~~~~~tiii~t 201 (265)
T PRK10253 170 PTTW-------------LDISHQIDLLELLSELNREKGYTLAAVL 201 (265)
T ss_pred cccc-------------CCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 9996 7777777777666544332334566665
No 124
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1.2e-26 Score=268.33 Aligned_cols=222 Identities=17% Similarity=0.155 Sum_probs=163.6
Q ss_pred cCcCCCCCCc----------cccccccCCCcchhhcccCCCCCCCCCCcccccCceeEEEEecCCCeeEEEeeeEEEe--
Q 001709 656 GAPLRRPPNL----------SISVFPSIDSETIDCCMEHGSGSADDEKFIRPEGLSDVFIFCTSDFTTVFKEVHFRTR-- 723 (1022)
Q Consensus 656 ~~Plk~l~~~----------~~~vf~~ld~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~aLkdVSL~V~-- 723 (1022)
+.|+|.++.. ++.+|++++++..+.......+ ......+++. ++++.+.|. +++++++|+||+++
T Consensus 271 f~PlR~lGs~fH~~~~g~aa~d~i~~~l~~~~~~~~~~~~~~-~~~~~~~ei~-~~~l~~~y~-~g~~~l~~l~~t~~~g 347 (559)
T COG4988 271 FQPLRDLGSFFHAAAAGEAAADKLFTLLESPVATPGSGEKAE-VANEPPIEIS-LENLSFRYP-DGKPALSDLNLTIKAG 347 (559)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCCCccccc-cccCCCceee-ecceEEecC-CCCcccCCceeEecCC
Confidence 6688887776 6778888887662211111001 1111223321 335555554 44599999999999
Q ss_pred -EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEcccc---c-hhhhcCceEEEcCCCCCCccccccccchHHHHhcc
Q 001709 724 -RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEAD---D-QEGIAGGLCYCDSAGVNLQELTMEAARFKDEMWMG 798 (1022)
Q Consensus 724 -iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~---~-~~~lr~~IGyV~Q~~~~~~~lTV~~~~~~ENI~~g 798 (1022)
.++|+|+||||||||+++|+|+. +|++|+|.+||.+ . ...++++++||+| .+.++..|+ +|||.++
T Consensus 348 ~~talvG~SGaGKSTLl~lL~G~~---~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q-~p~lf~gTi-----reNi~l~ 418 (559)
T COG4988 348 QLTALVGASGAGKSTLLNLLLGFL---APTQGEIRVNGIDLRDLSPEAWRKQISWVSQ-NPYLFAGTI-----RENILLA 418 (559)
T ss_pred cEEEEECCCCCCHHHHHHHHhCcC---CCCCceEEECCccccccCHHHHHhHeeeeCC-CCccccccH-----HHHhhcc
Confidence 99999999999999999999999 9999999999755 3 6788999999999 455444899 9999999
Q ss_pred ccc-hHHHHHHHH-HhcCCcc----------ccCCCcCCch-HHHHHHHHH---------hhhccccCCChhHHHHHhhh
Q 001709 799 IRD-LSRKTDLIV-LVHNLSH----------KIPRYNYSSA-SGQQQPALS---------LLLNEAKSLGIPWVLAITNK 856 (1022)
Q Consensus 799 ~~~-~~~~v~~~L-~v~gL~~----------~~~r~~~~LS-GqrQRvaIA---------LLLDEPTSad~~~v~~I~~~ 856 (1022)
..+ .++.+.+++ .+ ||.+ .+++....|| ||+|||+|| +|||||||.
T Consensus 419 ~~~~s~e~i~~al~~a-~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~----------- 486 (559)
T COG4988 419 RPDASDEEIIAALDQA-GLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAH----------- 486 (559)
T ss_pred CCcCCHHHHHHHHHHh-cHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccC-----------
Confidence 874 455566666 44 5544 4555666799 999999999 999999996
Q ss_pred hcccHHHHHHHHHHHHHHHHhCCCeEEEEecCCcccccCcccccccCCC
Q 001709 857 FSVSAHQQRAAIDAVMQAYQASPSTTEVINSCPYVMPGAVSASLSWGAS 905 (1022)
Q Consensus 857 ~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~~V~~~~~~a~~l~~~~ 905 (1022)
+|+++...+...+.+..+. .++++++|-.+.+..+|..+++....
T Consensus 487 --LD~etE~~i~~~l~~l~~~--ktvl~itHrl~~~~~~D~I~vld~G~ 531 (559)
T COG4988 487 --LDAETEQIILQALQELAKQ--KTVLVITHRLEDAADADRIVVLDNGR 531 (559)
T ss_pred --CCHhHHHHHHHHHHHHHhC--CeEEEEEcChHHHhcCCEEEEecCCc
Confidence 7777766666666555443 78888899888888888888777543
No 125
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.94 E-value=3.4e-26 Score=241.77 Aligned_cols=153 Identities=16% Similarity=0.188 Sum_probs=123.0
Q ss_pred CeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc-h-----------hhhcCceEEEc
Q 001709 711 FTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD-Q-----------EGIAGGLCYCD 775 (1022)
Q Consensus 711 ~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~-~-----------~~lr~~IGyV~ 775 (1022)
.+++|+||||+++ +++|+||||||||||+|+|+|++ +|++|+|.+++.++ . ..+++.++||+
T Consensus 15 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~---~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~ 91 (250)
T PRK11264 15 GQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLE---QPEAGTIRVGDITIDTARSLSQQKGLIRQLRQHVGFVF 91 (250)
T ss_pred CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCC---CCCCeEEEECCEEccccccccchhhHHHHhhhhEEEEe
Confidence 4579999999998 99999999999999999999999 99999999997554 1 23467899999
Q ss_pred CCCCCCccccccccchHHHHhcccc-----c---hHHHHHHHH-HhcCCccccCCCcCCch-HHHHHHHHH---------
Q 001709 776 SAGVNLQELTMEAARFKDEMWMGIR-----D---LSRKTDLIV-LVHNLSHKIPRYNYSSA-SGQQQPALS--------- 836 (1022)
Q Consensus 776 Q~~~~~~~lTV~~~~~~ENI~~g~~-----~---~~~~v~~~L-~v~gL~~~~~r~~~~LS-GqrQRvaIA--------- 836 (1022)
|+...++.+|+ .||+.++.. . ..+++.+++ .+ ||.+..++++.+|| |||||++||
T Consensus 92 q~~~~~~~~tv-----~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~-gl~~~~~~~~~~LS~Gq~qrv~la~al~~~p~l 165 (250)
T PRK11264 92 QNFNLFPHRTV-----LENIIEGPVIVKGEPKEEATARARELLAKV-GLAGKETSYPRRLSGGQQQRVAIARALAMRPEV 165 (250)
T ss_pred cCcccCCCCCH-----HHHHHHHHHHhcCCCHHHHHHHHHHHHHHc-CCcchhhCChhhCChHHHHHHHHHHHHhcCCCE
Confidence 95444777999 999976421 1 234577778 77 99988899999999 999999999
Q ss_pred hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEe
Q 001709 837 LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVIN 886 (1022)
Q Consensus 837 LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~ 886 (1022)
|||||||++ +|...+..+...+.+ +.....++++++
T Consensus 166 llLDEPt~~-------------LD~~~~~~l~~~l~~-~~~~~~tvi~~t 201 (250)
T PRK11264 166 ILFDEPTSA-------------LDPELVGEVLNTIRQ-LAQEKRTMVIVT 201 (250)
T ss_pred EEEeCCCcc-------------CCHHHHHHHHHHHHH-HHhcCCEEEEEe
Confidence 999999997 777777777665544 343344555555
No 126
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=5.2e-26 Score=239.48 Aligned_cols=168 Identities=15% Similarity=0.171 Sum_probs=130.0
Q ss_pred CeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc----h-hhhcCceEEEcCCCCCCc
Q 001709 711 FTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD----Q-EGIAGGLCYCDSAGVNLQ 782 (1022)
Q Consensus 711 ~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~----~-~~lr~~IGyV~Q~~~~~~ 782 (1022)
++++|+|+||+++ +++|+||||||||||+|+|+|++ +|++|+|.+++.++ . ...++.|+|++|+...++
T Consensus 15 ~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~---~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~ 91 (241)
T PRK10895 15 GRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIV---PRDAGNIIIDDEDISLLPLHARARRGIGYLPQEASIFR 91 (241)
T ss_pred CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC---CCCCcEEEECCEECCCCCHHHHHHhCeEEeccCCcccc
Confidence 4679999999998 99999999999999999999999 99999999998654 1 224678999999544477
Q ss_pred cccccccchHHHHhcccc-----c---hHHHHHHHH-HhcCCccccCCCcCCch-HHHHHHHHH---------hhhcccc
Q 001709 783 ELTMEAARFKDEMWMGIR-----D---LSRKTDLIV-LVHNLSHKIPRYNYSSA-SGQQQPALS---------LLLNEAK 843 (1022)
Q Consensus 783 ~lTV~~~~~~ENI~~g~~-----~---~~~~v~~~L-~v~gL~~~~~r~~~~LS-GqrQRvaIA---------LLLDEPT 843 (1022)
.+|+ .||+.+... . ...++++++ .+ ||.+..++.+.+|| |||||++|| |||||||
T Consensus 92 ~~tv-----~enl~~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt 165 (241)
T PRK10895 92 RLSV-----YDNLMAVLQIRDDLSAEQREDRANELMEEF-HIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLDEPF 165 (241)
T ss_pred cCcH-----HHHHhhhhhcccccCHHHHHHHHHHHHHHc-CCHHHhhcchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 7899 999987531 1 234577788 77 99988999999999 999999999 9999999
Q ss_pred CCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCC-cccccCcccccc
Q 001709 844 SLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCP-YVMPGAVSASLS 901 (1022)
Q Consensus 844 Sad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~-~V~~~~~~a~~l 901 (1022)
++ +|...+..+...+ +.+.....++++++|.. .+...++..+.+
T Consensus 166 ~~-------------LD~~~~~~l~~~l-~~~~~~g~tiii~sH~~~~~~~~~d~v~~l 210 (241)
T PRK10895 166 AG-------------VDPISVIDIKRII-EHLRDSGLGVLITDHNVRETLAVCERAYIV 210 (241)
T ss_pred cc-------------CCHHHHHHHHHHH-HHHHhcCCEEEEEEcCHHHHHHhcCEEEEE
Confidence 96 6766666665544 34444445666665433 344444544444
No 127
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=5e-26 Score=246.09 Aligned_cols=169 Identities=12% Similarity=0.119 Sum_probs=131.7
Q ss_pred eeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc-h----hhhcCceEEEcCCCCC-Cc
Q 001709 712 TTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD-Q----EGIAGGLCYCDSAGVN-LQ 782 (1022)
Q Consensus 712 ~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~-~----~~lr~~IGyV~Q~~~~-~~ 782 (1022)
+++|++|||+|+ +++|+|+||||||||+++|+|++ +|++|+|.++|.++ . ..+++.||||||++.. +.
T Consensus 23 ~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~---~~~~G~i~i~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~ 99 (280)
T PRK13633 23 KLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALL---IPSEGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIV 99 (280)
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC---CCCCceEEECCEeccccccHHHHhhheEEEecChhhhhc
Confidence 569999999999 99999999999999999999999 99999999998654 1 3457889999995433 44
Q ss_pred cccccccchHHHHhccccc-------hHHHHHHHH-HhcCCccccCCCcCCch-HHHHHHHHH---------hhhccccC
Q 001709 783 ELTMEAARFKDEMWMGIRD-------LSRKTDLIV-LVHNLSHKIPRYNYSSA-SGQQQPALS---------LLLNEAKS 844 (1022)
Q Consensus 783 ~lTV~~~~~~ENI~~g~~~-------~~~~v~~~L-~v~gL~~~~~r~~~~LS-GqrQRvaIA---------LLLDEPTS 844 (1022)
..|+ .+|+.|+... ..+++++++ .+ ||.++.++++.+|| |||||++|| |||||||+
T Consensus 100 ~~~v-----~~~l~~~~~~~~~~~~~~~~~~~~~l~~~-gL~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~ 173 (280)
T PRK13633 100 ATIV-----EEDVAFGPENLGIPPEEIRERVDESLKKV-GMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTA 173 (280)
T ss_pred cccH-----HHHHHhhHhhcCCCHHHHHHHHHHHHHHC-CCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence 4689 9999886431 245678888 77 99999999999999 999999999 99999999
Q ss_pred CChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCCcccccCccccccc
Q 001709 845 LGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCPYVMPGAVSASLSW 902 (1022)
Q Consensus 845 ad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~~V~~~~~~a~~l~ 902 (1022)
+ +|...+..+...+.+..++..-++++++|.......++..+.+.
T Consensus 174 g-------------LD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~ 218 (280)
T PRK13633 174 M-------------LDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMD 218 (280)
T ss_pred c-------------CCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhcCCEEEEEE
Confidence 7 77788887776665443333446666654433333355555443
No 128
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.94 E-value=4.6e-26 Score=236.06 Aligned_cols=166 Identities=17% Similarity=0.162 Sum_probs=129.0
Q ss_pred EEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc--hhhhcCceEEEcCCCCCCccccccc
Q 001709 714 VFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD--QEGIAGGLCYCDSAGVNLQELTMEA 788 (1022)
Q Consensus 714 aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~--~~~lr~~IGyV~Q~~~~~~~lTV~~ 788 (1022)
.++++||+++ +++|+||||||||||+|+|+|++ +|++|+|++++.++ ....++.++||+|+...|+.+|+
T Consensus 13 ~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~---~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~-- 87 (213)
T TIGR01277 13 LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFI---EPASGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTV-- 87 (213)
T ss_pred cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCC---CCCCcEEEECCEEcccCChhccceEEEeccCccCCCCcH--
Confidence 5689999998 99999999999999999999999 99999999998765 23456789999995444777899
Q ss_pred cchHHHHhcccc-------chHHHHHHHH-HhcCCccccCCCcCCch-HHHHHHHHH---------hhhccccCCChhHH
Q 001709 789 ARFKDEMWMGIR-------DLSRKTDLIV-LVHNLSHKIPRYNYSSA-SGQQQPALS---------LLLNEAKSLGIPWV 850 (1022)
Q Consensus 789 ~~~~ENI~~g~~-------~~~~~v~~~L-~v~gL~~~~~r~~~~LS-GqrQRvaIA---------LLLDEPTSad~~~v 850 (1022)
.||+.++.. ..++++.+++ .+ ||.+..++.+.+|| |||||++|| |||||||++
T Consensus 88 ---~en~~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~----- 158 (213)
T TIGR01277 88 ---RQNIGLGLHPGLKLNAEQQEKVVDAAQQV-GIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSA----- 158 (213)
T ss_pred ---HHHHHhHhhccCCccHHHHHHHHHHHHHc-CcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCcc-----
Confidence 999986532 1234677788 77 99999999999999 999999999 999999996
Q ss_pred HHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCCc-ccccCcccccc
Q 001709 851 LAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCPY-VMPGAVSASLS 901 (1022)
Q Consensus 851 ~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~~-V~~~~~~a~~l 901 (1022)
+|...+..+...+.+..+....++++++|... +...++..+.+
T Consensus 159 --------LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l 202 (213)
T TIGR01277 159 --------LDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVV 202 (213)
T ss_pred --------CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEE
Confidence 77777777776665544433446666653333 33334444443
No 129
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.94 E-value=3.7e-26 Score=238.72 Aligned_cols=155 Identities=19% Similarity=0.234 Sum_probs=122.5
Q ss_pred CeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc----hh-hhcCceEEEcCCCCCCc
Q 001709 711 FTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD----QE-GIAGGLCYCDSAGVNLQ 782 (1022)
Q Consensus 711 ~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~----~~-~lr~~IGyV~Q~~~~~~ 782 (1022)
.+++|+||||+++ +++|+||||||||||+++|+|++ +|++|+|.+++.++ .. ..++.++|++|+...|+
T Consensus 12 ~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~---~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~ 88 (230)
T TIGR03410 12 QSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLL---PVKSGSIRLDGEDITKLPPHERARAGIAYVPQGREIFP 88 (230)
T ss_pred CeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCC---CCCCCEEEECCEECCCCCHHHHHHhCeEEeccCCcccC
Confidence 4679999999999 99999999999999999999999 99999999998654 11 23568999999554578
Q ss_pred cccccccchHHHHhccccc----hHHHHHHHH-HhcCCccccCCCcCCch-HHHHHHHHH---------hhhccccCCCh
Q 001709 783 ELTMEAARFKDEMWMGIRD----LSRKTDLIV-LVHNLSHKIPRYNYSSA-SGQQQPALS---------LLLNEAKSLGI 847 (1022)
Q Consensus 783 ~lTV~~~~~~ENI~~g~~~----~~~~v~~~L-~v~gL~~~~~r~~~~LS-GqrQRvaIA---------LLLDEPTSad~ 847 (1022)
.+|+ .||+.++... ..+.+++++ .+.++.+..++++.+|| |||||++|| |||||||++
T Consensus 89 ~~tv-----~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~illlDEPt~~-- 161 (230)
T TIGR03410 89 RLTV-----EENLLTGLAALPRRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEG-- 161 (230)
T ss_pred CCcH-----HHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCccc--
Confidence 8899 9999876431 234456677 66226778899999999 999999999 999999997
Q ss_pred hHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEe
Q 001709 848 PWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVIN 886 (1022)
Q Consensus 848 ~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~ 886 (1022)
+|...+..+...+.+..+....++++++
T Consensus 162 -----------LD~~~~~~l~~~l~~~~~~~~~tii~~s 189 (230)
T TIGR03410 162 -----------IQPSIIKDIGRVIRRLRAEGGMAILLVE 189 (230)
T ss_pred -----------CCHHHHHHHHHHHHHHHHcCCcEEEEEe
Confidence 7777777777666554332334555554
No 130
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.94 E-value=2.4e-26 Score=276.59 Aligned_cols=178 Identities=15% Similarity=0.129 Sum_probs=139.5
Q ss_pred ceeEEEEecCCCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc----hhhhcCceE
Q 001709 700 LSDVFIFCTSDFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD----QEGIAGGLC 772 (1022)
Q Consensus 700 l~~~~~~~~~~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~----~~~lr~~IG 772 (1022)
++++++.|..+.+++|+|+||+|+ .++|+||||||||||+|+|+|++ +|++|+|.+||.++ ..++|+.||
T Consensus 480 ~~~vsf~y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~---~p~~G~I~idg~~i~~~~~~~lr~~i~ 556 (710)
T TIGR03796 480 LRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLY---QPWSGEILFDGIPREEIPREVLANSVA 556 (710)
T ss_pred EEEEEEecCCCCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCC---CCCCcEEEECCEeHHHCCHHHHHhhee
Confidence 667677665445689999999998 99999999999999999999999 99999999998765 567899999
Q ss_pred EEcCCCCCCccccccccchHHHHhccccc-hHHHHHHHH-Hh----------cCCccccCCCcCCch-HHHHHHHHH---
Q 001709 773 YCDSAGVNLQELTMEAARFKDEMWMGIRD-LSRKTDLIV-LV----------HNLSHKIPRYNYSSA-SGQQQPALS--- 836 (1022)
Q Consensus 773 yV~Q~~~~~~~lTV~~~~~~ENI~~g~~~-~~~~v~~~L-~v----------~gL~~~~~r~~~~LS-GqrQRvaIA--- 836 (1022)
||+| ++.++..|+ +|||.++..+ .++++.+++ .. .|++....+....|| |||||++||
T Consensus 557 ~v~Q-~~~lf~gTi-----~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARal 630 (710)
T TIGR03796 557 MVDQ-DIFLFEGTV-----RDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARAL 630 (710)
T ss_pred EEec-CChhhhccH-----HHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHH
Confidence 9999 555556899 9999987542 334444444 33 245555667778899 999999999
Q ss_pred ------hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCCcccccCcccccccC
Q 001709 837 ------LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCPYVMPGAVSASLSWG 903 (1022)
Q Consensus 837 ------LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~~V~~~~~~a~~l~~ 903 (1022)
||||||||+ +|..+...+...+.+ ...|+++++|-...+..+|..+.+.+
T Consensus 631 l~~p~iliLDEptS~-------------LD~~te~~i~~~l~~----~~~T~IiitHrl~~i~~~D~Iivl~~ 686 (710)
T TIGR03796 631 VRNPSILILDEATSA-------------LDPETEKIIDDNLRR----RGCTCIIVAHRLSTIRDCDEIIVLER 686 (710)
T ss_pred hhCCCEEEEECcccc-------------CCHHHHHHHHHHHHh----cCCEEEEEecCHHHHHhCCEEEEEeC
Confidence 999999997 777777777766543 34677777766666666777666654
No 131
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.94 E-value=4.3e-26 Score=240.02 Aligned_cols=131 Identities=25% Similarity=0.329 Sum_probs=113.6
Q ss_pred CCCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc-----hhhhcCceEEEcCCCCC
Q 001709 709 SDFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD-----QEGIAGGLCYCDSAGVN 780 (1022)
Q Consensus 709 ~~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~-----~~~lr~~IGyV~Q~~~~ 780 (1022)
|+..++|++|||+++ +|+|||+||+|||||||+|+|+. +|.+|+|.++|.|+ ....|.+|+|||| .-.
T Consensus 13 YG~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~---~~~~G~I~~~G~dit~~p~~~r~r~Gi~~VPe-gR~ 88 (237)
T COG0410 13 YGKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLV---RPRSGRIIFDGEDITGLPPHERARLGIAYVPE-GRR 88 (237)
T ss_pred ccceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCC---CCCCeeEEECCeecCCCCHHHHHhCCeEeCcc-ccc
Confidence 356899999999999 99999999999999999999999 99999999998876 3456899999999 555
Q ss_pred -CccccccccchHHHHhccccc-----hHH-HHHHHH-HhcCCccccCCCcCCch-HHHHHHHHH---------hhhccc
Q 001709 781 -LQELTMEAARFKDEMWMGIRD-----LSR-KTDLIV-LVHNLSHKIPRYNYSSA-SGQQQPALS---------LLLNEA 842 (1022)
Q Consensus 781 -~~~lTV~~~~~~ENI~~g~~~-----~~~-~v~~~L-~v~gL~~~~~r~~~~LS-GqrQRvaIA---------LLLDEP 842 (1022)
|+.||| +||+.+|... ..+ ..+++. +|-.|.+..+++..+|| ||||.+||| ||||||
T Consensus 89 iF~~LTV-----eENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~PklLLLDEP 163 (237)
T COG0410 89 IFPRLTV-----EENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEP 163 (237)
T ss_pred chhhCcH-----HHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCCCEEEecCC
Confidence 999999 9999987552 112 266777 66578999999999999 999999999 999999
Q ss_pred cCCChh
Q 001709 843 KSLGIP 848 (1022)
Q Consensus 843 TSad~~ 848 (1022)
|.+.-|
T Consensus 164 s~GLaP 169 (237)
T COG0410 164 SEGLAP 169 (237)
T ss_pred ccCcCH
Confidence 997544
No 132
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.94 E-value=5.6e-26 Score=236.50 Aligned_cols=168 Identities=16% Similarity=0.192 Sum_probs=132.6
Q ss_pred eeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc-h------hhhcCceEEEcCCCCCC
Q 001709 712 TTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD-Q------EGIAGGLCYCDSAGVNL 781 (1022)
Q Consensus 712 ~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~-~------~~lr~~IGyV~Q~~~~~ 781 (1022)
.++|+||||+++ +++|+|+||||||||+++|+|++ +|++|+|.++|.++ . ...++.|+|+||+...|
T Consensus 18 ~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~---~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 94 (220)
T TIGR02982 18 KQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLR---SVQEGSLKVLGQELYGASEKELVQLRRNIGYIFQAHNLL 94 (220)
T ss_pred eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC---CCCCeEEEECCEEhHhcCHhHHHHHHhheEEEcCChhhc
Confidence 679999999999 99999999999999999999999 99999999998654 1 13467899999954447
Q ss_pred ccccccccchHHHHhcccc---c-----hHHHHHHHH-HhcCCccccCCCcCCch-HHHHHHHHH---------hhhccc
Q 001709 782 QELTMEAARFKDEMWMGIR---D-----LSRKTDLIV-LVHNLSHKIPRYNYSSA-SGQQQPALS---------LLLNEA 842 (1022)
Q Consensus 782 ~~lTV~~~~~~ENI~~g~~---~-----~~~~v~~~L-~v~gL~~~~~r~~~~LS-GqrQRvaIA---------LLLDEP 842 (1022)
+.+|+ .||+.++.. . ..+++.+++ .+ ||.+..++++.+|| |||||++|| ||||||
T Consensus 95 ~~~t~-----~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~lS~G~~qrv~laral~~~p~illlDEP 168 (220)
T TIGR02982 95 GFLTA-----RQNVQMALELQPNLSYQEARERARAMLEAV-GLGDHLDYYPHNLSGGQKQRVAIARALVHRPKLVLADEP 168 (220)
T ss_pred CCCCH-----HHHHHHHHHhccCCCHHHHHHHHHHHHHHc-CChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 77899 999987532 1 234677888 77 99999999999999 999999999 999999
Q ss_pred cCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCCcccccCcccccc
Q 001709 843 KSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCPYVMPGAVSASLS 901 (1022)
Q Consensus 843 TSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~~V~~~~~~a~~l 901 (1022)
|++ +|...+..+...+.+..+..+.+++++.|...+...++.++.+
T Consensus 169 ~~~-------------LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~~~~d~v~~l 214 (220)
T TIGR02982 169 TAA-------------LDSKSGRDVVELMQKLAREQGCTILIVTHDNRILDVADRIVHM 214 (220)
T ss_pred CCc-------------CCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhhCCEEEEE
Confidence 996 7777777777666544433455677776555554444544444
No 133
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.94 E-value=1.4e-26 Score=284.42 Aligned_cols=210 Identities=19% Similarity=0.211 Sum_probs=154.2
Q ss_pred cccccccCCCcchhhcccCCCCC--CCCCCcccccCceeEEEEecCC-CeeEEEeeeEEEe---EEEEEcCCCCcHHHHH
Q 001709 666 SISVFPSIDSETIDCCMEHGSGS--ADDEKFIRPEGLSDVFIFCTSD-FTTVFKEVHFRTR---RVRLLGLEGAGKTSLF 739 (1022)
Q Consensus 666 ~~~vf~~ld~~~~~~~~~~~~~~--~~~~~~i~~~~l~~~~~~~~~~-~~~aLkdVSL~V~---iVaLlGpNGAGKSTLL 739 (1022)
+.++|+++|..+...... ..+. ...+..|+ +++++|.|... +..+|+|+||+|+ .|+|||||||||||++
T Consensus 321 a~~I~~~i~~~~~i~~~~-~~~~~~~~~~g~ie---f~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i 396 (1228)
T KOG0055|consen 321 AYRIFETIDRKPSIDPYS-KGGRVLSSIKGEIE---FRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLI 396 (1228)
T ss_pred hHHHHHHhcCCCCCCccc-ccCCcccccccceE---EEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHH
Confidence 667888888766333222 1111 12233344 77777777654 4679999999999 9999999999999999
Q ss_pred HHHHcCCCCCCCCceEEEEccccc----hhhhcCceEEEcCCCCCCccccccccchHHHHhccccc-----h------HH
Q 001709 740 KAILGQGKLVRTINSGNLDAEADD----QEGIAGGLCYCDSAGVNLQELTMEAARFKDEMWMGIRD-----L------SR 804 (1022)
Q Consensus 740 klL~GL~~~~~PtsG~I~idg~~~----~~~lr~~IGyV~Q~~~~~~~lTV~~~~~~ENI~~g~~~-----~------~~ 804 (1022)
++|.|+| .|++|+|++||.++ .+.+|.+||+|+| ++.++..|+ +|||.||.++ . ..
T Consensus 397 ~LL~Rfy---dP~~G~V~idG~di~~~~~~~lr~~iglV~Q-ePvlF~~tI-----~eNI~~G~~dat~~~i~~a~k~an 467 (1228)
T KOG0055|consen 397 QLLARFY---DPTSGEVLIDGEDIRNLNLKWLRSQIGLVSQ-EPVLFATTI-----RENIRYGKPDATREEIEEAAKAAN 467 (1228)
T ss_pred HHHHHhc---CCCCceEEEcCccchhcchHHHHhhcCeeee-chhhhcccH-----HHHHhcCCCcccHHHHHHHHHHcc
Confidence 9999999 99999999998765 6788999999999 566666999 9999999964 1 12
Q ss_pred HHHHHH-HhcCCccccCCCcCCch-HHHHHHHHH---------hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHH
Q 001709 805 KTDLIV-LVHNLSHKIPRYNYSSA-SGQQQPALS---------LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQ 873 (1022)
Q Consensus 805 ~v~~~L-~v~gL~~~~~r~~~~LS-GqrQRvaIA---------LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~ 873 (1022)
..+.+. +.+|++....++..+|| |||||+||| ||||||||| ||+..++...+++ +
T Consensus 468 a~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~~P~ILLLDEaTSa-------------LD~~se~~Vq~AL-d 533 (1228)
T KOG0055|consen 468 AHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRNPKILLLDEATSA-------------LDAESERVVQEAL-D 533 (1228)
T ss_pred HHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHHhCCCEEEecCcccc-------------cCHHHHHHHHHHH-H
Confidence 344455 66688888889999999 999999999 999999998 6666555544444 3
Q ss_pred HHHhCCCeEEEEecCCcccccCcccccccC
Q 001709 874 AYQASPSTTEVINSCPYVMPGAVSASLSWG 903 (1022)
Q Consensus 874 ~~~~t~~~~vVv~~~~~V~~~~~~a~~l~~ 903 (1022)
.... ..|++||.|---.+..+|..+++.+
T Consensus 534 ~~~~-grTTivVaHRLStIrnaD~I~v~~~ 562 (1228)
T KOG0055|consen 534 KASK-GRTTIVVAHRLSTIRNADKIAVMEE 562 (1228)
T ss_pred Hhhc-CCeEEEEeeehhhhhccCEEEEEEC
Confidence 3333 3577777544444444555555444
No 134
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=3.6e-26 Score=245.94 Aligned_cols=155 Identities=20% Similarity=0.204 Sum_probs=124.8
Q ss_pred CCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc----hhh----hcCceEEEcCCC
Q 001709 710 DFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD----QEG----IAGGLCYCDSAG 778 (1022)
Q Consensus 710 ~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~----~~~----lr~~IGyV~Q~~ 778 (1022)
+..++|+||||+++ +++|+||||||||||+|+|+|++ +|++|+|.++|.++ ... .+++|+|++|+.
T Consensus 35 ~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~---~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~ 111 (269)
T cd03294 35 GQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLI---EPTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSF 111 (269)
T ss_pred CCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC---CCCCeEEEECCEEccccChhhhhhhhcCcEEEEecCc
Confidence 45789999999999 99999999999999999999999 99999999998654 111 245799999954
Q ss_pred CCCccccccccchHHHHhcccc-----c--hHHHHHHHH-HhcCCccccCCCcCCch-HHHHHHHHH---------hhhc
Q 001709 779 VNLQELTMEAARFKDEMWMGIR-----D--LSRKTDLIV-LVHNLSHKIPRYNYSSA-SGQQQPALS---------LLLN 840 (1022)
Q Consensus 779 ~~~~~lTV~~~~~~ENI~~g~~-----~--~~~~v~~~L-~v~gL~~~~~r~~~~LS-GqrQRvaIA---------LLLD 840 (1022)
..++.+|+ .||+.++.. . ..+++.+++ .+ ||.+..++++.+|| |||||++|| ||||
T Consensus 112 ~~~~~~tv-----~e~l~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~LS~Gq~qrv~lAral~~~p~illLD 185 (269)
T cd03294 112 ALLPHRTV-----LENVAFGLEVQGVPRAEREERAAEALELV-GLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLMD 185 (269)
T ss_pred ccCCCCcH-----HHHHHHHHHhcCCCHHHHHHHHHHHHHHc-CCHhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 44778999 999987532 1 235677888 77 99999999999999 999999999 9999
Q ss_pred cccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEe
Q 001709 841 EAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVIN 886 (1022)
Q Consensus 841 EPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~ 886 (1022)
|||++ +|...+..+...+.+.......++++++
T Consensus 186 EPt~~-------------LD~~~~~~l~~~l~~~~~~~g~tiii~t 218 (269)
T cd03294 186 EAFSA-------------LDPLIRREMQDELLRLQAELQKTIVFIT 218 (269)
T ss_pred CCCcc-------------CCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 99997 7777777777666544333344556665
No 135
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.94 E-value=3.9e-26 Score=231.32 Aligned_cols=178 Identities=17% Similarity=0.196 Sum_probs=137.2
Q ss_pred ccccCceeEEEEecCCCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc-------h
Q 001709 695 IRPEGLSDVFIFCTSDFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD-------Q 764 (1022)
Q Consensus 695 i~~~~l~~~~~~~~~~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~-------~ 764 (1022)
|.++++++.. -...+...+|++|+|.|. .++|||||||||||||-+++||. .|++|+|.+.|.+. .
T Consensus 7 i~~~~l~ktv-g~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd---~~ssGeV~l~G~~L~~ldEd~r 82 (228)
T COG4181 7 IEVHHLSKTV-GQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLD---DPSSGEVRLLGQPLHKLDEDAR 82 (228)
T ss_pred eehhhhhhhh-cCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCC---CCCCceEEEcCcchhhcCHHHH
Confidence 4444555422 223345679999999998 99999999999999999999999 99999999998654 2
Q ss_pred hhh-cCceEEEcCCCCCCccccccccchHHHHhcccc-------chHHHHHHHH-HhcCCccccCCCcCCch-HHHHHHH
Q 001709 765 EGI-AGGLCYCDSAGVNLQELTMEAARFKDEMWMGIR-------DLSRKTDLIV-LVHNLSHKIPRYNYSSA-SGQQQPA 834 (1022)
Q Consensus 765 ~~l-r~~IGyV~Q~~~~~~~lTV~~~~~~ENI~~g~~-------~~~~~v~~~L-~v~gL~~~~~r~~~~LS-GqrQRva 834 (1022)
..+ .+++|||||.-.++|+||. .||++++.. +....+.+.| .+ ||.+.+..||.+|| |+|||||
T Consensus 83 A~~R~~~vGfVFQSF~Lip~ltA-----lENV~lPleL~ge~~~~~~~~A~~lL~~v-GLg~Rl~HyP~qLSGGEQQRVA 156 (228)
T COG4181 83 AALRARHVGFVFQSFHLIPNLTA-----LENVALPLELRGESSADSRAGAKALLEAV-GLGKRLTHYPAQLSGGEQQRVA 156 (228)
T ss_pred HHhhccceeEEEEeeeccccchh-----hhhccchhhhcCCccccHHHHHHHHHHHh-CcccccccCccccCchHHHHHH
Confidence 233 4689999994334899999 999998765 2445677888 99 99999999999999 9999999
Q ss_pred HH---------hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEE-EecCCcccccCc
Q 001709 835 LS---------LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEV-INSCPYVMPGAV 896 (1022)
Q Consensus 835 IA---------LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vV-v~~~~~V~~~~~ 896 (1022)
|| |+.||||.. +|..+...+.+.+-....+ ++++.| |+|.+.+..-++
T Consensus 157 iARAfa~~P~vLfADEPTGN-------------LD~~Tg~~iaDLlF~lnre-~G~TlVlVTHD~~LA~Rc~ 214 (228)
T COG4181 157 LARAFAGRPDVLFADEPTGN-------------LDRATGDKIADLLFALNRE-RGTTLVLVTHDPQLAARCD 214 (228)
T ss_pred HHHHhcCCCCEEeccCCCCC-------------cchhHHHHHHHHHHHHhhh-cCceEEEEeCCHHHHHhhh
Confidence 99 999999986 7777777777666555444 455544 465544443333
No 136
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=4.1e-26 Score=246.27 Aligned_cols=168 Identities=16% Similarity=0.193 Sum_probs=130.5
Q ss_pred CeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc-----hhhhcCceEEEcCCCCC-C
Q 001709 711 FTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD-----QEGIAGGLCYCDSAGVN-L 781 (1022)
Q Consensus 711 ~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~-----~~~lr~~IGyV~Q~~~~-~ 781 (1022)
..++|+||||+|+ +++|+||||||||||||+|+|++ +|++|+|++++.++ ...+++.|||++|++.. +
T Consensus 14 ~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~---~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~ 90 (274)
T PRK13644 14 GTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLL---RPQKGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQF 90 (274)
T ss_pred CCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCC---CCCCceEEECCEECCccccHHHHHhheEEEEEChhhhc
Confidence 3569999999999 99999999999999999999999 99999999998654 13456789999995443 6
Q ss_pred ccccccccchHHHHhccccc-------hHHHHHHHH-HhcCCccccCCCcCCch-HHHHHHHHH---------hhhcccc
Q 001709 782 QELTMEAARFKDEMWMGIRD-------LSRKTDLIV-LVHNLSHKIPRYNYSSA-SGQQQPALS---------LLLNEAK 843 (1022)
Q Consensus 782 ~~lTV~~~~~~ENI~~g~~~-------~~~~v~~~L-~v~gL~~~~~r~~~~LS-GqrQRvaIA---------LLLDEPT 843 (1022)
+.+|+ .|||.++... ..+++.+++ .+ ||.+..++++.+|| |||||++|| |||||||
T Consensus 91 ~~~tv-----~enl~~~~~~~~~~~~~~~~~~~~~l~~~-gl~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt 164 (274)
T PRK13644 91 VGRTV-----EEDLAFGPENLCLPPIEIRKRVDRALAEI-GLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVT 164 (274)
T ss_pred ccchH-----HHHHHhhHHHcCCCHHHHHHHHHHHHHHC-CCHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 66899 9999886431 245677888 77 99999999999999 999999999 9999999
Q ss_pred CCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCCcccccCcccccc
Q 001709 844 SLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCPYVMPGAVSASLS 901 (1022)
Q Consensus 844 Sad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~~V~~~~~~a~~l 901 (1022)
++ +|...+..+...+.+ +.....++++++|....+..++.++.+
T Consensus 165 ~g-------------LD~~~~~~l~~~l~~-l~~~g~til~~tH~~~~~~~~d~v~~l 208 (274)
T PRK13644 165 SM-------------LDPDSGIAVLERIKK-LHEKGKTIVYITHNLEELHDADRIIVM 208 (274)
T ss_pred cc-------------CCHHHHHHHHHHHHH-HHhCCCEEEEEecCHHHHhhCCEEEEE
Confidence 97 777777776666543 444444666665333333334444443
No 137
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=5.4e-26 Score=241.81 Aligned_cols=153 Identities=13% Similarity=0.186 Sum_probs=124.1
Q ss_pred CeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc----hhhhcCceEEEcCCCCCCcc
Q 001709 711 FTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD----QEGIAGGLCYCDSAGVNLQE 783 (1022)
Q Consensus 711 ~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~----~~~lr~~IGyV~Q~~~~~~~ 783 (1022)
.+++|++|||+++ +++|+|+||||||||+|+|+|++ +|++|+|.+++.++ ...+++.++|+||+...++.
T Consensus 14 ~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~---~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~ 90 (255)
T PRK11231 14 TKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLL---TPQSGTVFLGDKPISMLSSRQLARRLALLPQHHLTPEG 90 (255)
T ss_pred CEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCc---CCCCcEEEECCEEhHHCCHHHHhhheEEecccCCCCCC
Confidence 4689999999998 99999999999999999999999 99999999998654 23456789999995444777
Q ss_pred ccccccchHHHHhcccc-----------chHHHHHHHH-HhcCCccccCCCcCCch-HHHHHHHHH---------hhhcc
Q 001709 784 LTMEAARFKDEMWMGIR-----------DLSRKTDLIV-LVHNLSHKIPRYNYSSA-SGQQQPALS---------LLLNE 841 (1022)
Q Consensus 784 lTV~~~~~~ENI~~g~~-----------~~~~~v~~~L-~v~gL~~~~~r~~~~LS-GqrQRvaIA---------LLLDE 841 (1022)
+|+ .||+.++.. ...+++.+++ .+ ||.+..++++.+|| |||||++|| |||||
T Consensus 91 ~tv-----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE 164 (255)
T PRK11231 91 ITV-----RELVAYGRSPWLSLWGRLSAEDNARVNQAMEQT-RINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDE 164 (255)
T ss_pred ccH-----HHHHHhccchhhhhccCCCHHHHHHHHHHHHHc-CCHHHHcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 899 999987531 1234577778 77 99999999999999 999999999 99999
Q ss_pred ccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEe
Q 001709 842 AKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVIN 886 (1022)
Q Consensus 842 PTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~ 886 (1022)
||++ +|...+..+...+.+ +.....++++++
T Consensus 165 P~~~-------------LD~~~~~~l~~~l~~-l~~~~~tiii~t 195 (255)
T PRK11231 165 PTTY-------------LDINHQVELMRLMRE-LNTQGKTVVTVL 195 (255)
T ss_pred Cccc-------------CCHHHHHHHHHHHHH-HHHCCCEEEEEE
Confidence 9997 777777777666644 444444556555
No 138
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=5.3e-26 Score=246.46 Aligned_cols=179 Identities=13% Similarity=0.113 Sum_probs=135.1
Q ss_pred ceeEEEEecCCCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc------hhhhcCc
Q 001709 700 LSDVFIFCTSDFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD------QEGIAGG 770 (1022)
Q Consensus 700 l~~~~~~~~~~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~------~~~lr~~ 770 (1022)
++++.+.|. +++.+|++|||+|+ +++|+||||||||||+|+|+|++ +|++|+|.++|.++ ...+++.
T Consensus 8 ~~~l~~~~~-~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~---~p~~G~i~i~g~~~~~~~~~~~~~~~~ 83 (283)
T PRK13636 8 VEELNYNYS-DGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGIL---KPSSGRILFDGKPIDYSRKGLMKLRES 83 (283)
T ss_pred EEeEEEEeC-CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC---CCCccEEEECCEECCCCcchHHHHHhh
Confidence 444444443 34679999999999 99999999999999999999999 99999999998653 2346788
Q ss_pred eEEEcCCCCC-CccccccccchHHHHhcccc----c---hHHHHHHHH-HhcCCccccCCCcCCch-HHHHHHHHH----
Q 001709 771 LCYCDSAGVN-LQELTMEAARFKDEMWMGIR----D---LSRKTDLIV-LVHNLSHKIPRYNYSSA-SGQQQPALS---- 836 (1022)
Q Consensus 771 IGyV~Q~~~~-~~~lTV~~~~~~ENI~~g~~----~---~~~~v~~~L-~v~gL~~~~~r~~~~LS-GqrQRvaIA---- 836 (1022)
|||+||+... ++..|+ +||+.++.. . ..++++.++ .+ ||.++.++++.+|| |||||++||
T Consensus 84 ig~v~q~~~~~~~~~tv-----~e~l~~~~~~~~~~~~~~~~~~~~~l~~~-gL~~~~~~~~~~LS~G~~qrl~laraL~ 157 (283)
T PRK13636 84 VGMVFQDPDNQLFSASV-----YQDVSFGAVNLKLPEDEVRKRVDNALKRT-GIEHLKDKPTHCLSFGQKKRVAIAGVLV 157 (283)
T ss_pred EEEEecCcchhhccccH-----HHHHHhHHHHcCCCHHHHHHHHHHHHHHC-CChhhhhCCcccCCHHHHHHHHHHHHHH
Confidence 9999995433 556899 999987532 1 245678888 77 99999999999999 999999999
Q ss_pred -----hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCCc-ccccCcccccc
Q 001709 837 -----LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCPY-VMPGAVSASLS 901 (1022)
Q Consensus 837 -----LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~~-V~~~~~~a~~l 901 (1022)
|||||||++ +|...+..+...+.+..+....++++++|... +...++.++++
T Consensus 158 ~~p~lLilDEPt~g-------------LD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l 215 (283)
T PRK13636 158 MEPKVLVLDEPTAG-------------LDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVM 215 (283)
T ss_pred cCCCEEEEeCCccC-------------CCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEE
Confidence 999999997 77777777766665443332345566643322 23344544444
No 139
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.93 E-value=2.9e-26 Score=275.36 Aligned_cols=180 Identities=19% Similarity=0.196 Sum_probs=140.1
Q ss_pred ceeEEEEecCCCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc----hhhhcCceE
Q 001709 700 LSDVFIFCTSDFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD----QEGIAGGLC 772 (1022)
Q Consensus 700 l~~~~~~~~~~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~----~~~lr~~IG 772 (1022)
++++++.|..+..++|+|+||+|+ .++|+|+||||||||+|+|+|++ +|++|+|.+||.++ ...+|+.|+
T Consensus 466 ~~~vsf~Y~~~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~---~p~~G~I~idg~~l~~~~~~~lr~~i~ 542 (694)
T TIGR03375 466 FRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLY---QPTEGSVLLDGVDIRQIDPADLRRNIG 542 (694)
T ss_pred EEEEEEEeCCCCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCC---CCCCceEEECCEEhhhCCHHHHHhccE
Confidence 666666665445679999999998 99999999999999999999999 99999999998664 567899999
Q ss_pred EEcCCCCCCccccccccchHHHHhccccc-hHHHHHHHH-Hh----------cCCccccCCCcCCch-HHHHHHHHH---
Q 001709 773 YCDSAGVNLQELTMEAARFKDEMWMGIRD-LSRKTDLIV-LV----------HNLSHKIPRYNYSSA-SGQQQPALS--- 836 (1022)
Q Consensus 773 yV~Q~~~~~~~lTV~~~~~~ENI~~g~~~-~~~~v~~~L-~v----------~gL~~~~~r~~~~LS-GqrQRvaIA--- 836 (1022)
||+| ++.++..|+ +|||.++..+ .++++.+++ .. +|++...++....|| |||||++||
T Consensus 543 ~v~Q-~~~lf~~TI-----~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARal 616 (694)
T TIGR03375 543 YVPQ-DPRLFYGTL-----RDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARAL 616 (694)
T ss_pred EECC-ChhhhhhhH-----HHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHH
Confidence 9999 555555899 9999998653 344444444 32 345555667778999 999999999
Q ss_pred ------hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCCcccccCcccccccC
Q 001709 837 ------LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCPYVMPGAVSASLSWG 903 (1022)
Q Consensus 837 ------LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~~V~~~~~~a~~l~~ 903 (1022)
||||||||+ +|..+...+...+.+..+ ..|+++++|-...+..+|..+.+.+
T Consensus 617 l~~p~iliLDE~Ts~-------------LD~~te~~i~~~l~~~~~--~~T~iiItHrl~~~~~~D~iivl~~ 674 (694)
T TIGR03375 617 LRDPPILLLDEPTSA-------------MDNRSEERFKDRLKRWLA--GKTLVLVTHRTSLLDLVDRIIVMDN 674 (694)
T ss_pred hcCCCEEEEeCCCCC-------------CCHHHHHHHHHHHHHHhC--CCEEEEEecCHHHHHhCCEEEEEeC
Confidence 999999997 788777777766644322 3577777766666666776666644
No 140
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.93 E-value=5.6e-26 Score=241.01 Aligned_cols=162 Identities=15% Similarity=0.178 Sum_probs=127.8
Q ss_pred eeEEEEecCCCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc-h------------
Q 001709 701 SDVFIFCTSDFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD-Q------------ 764 (1022)
Q Consensus 701 ~~~~~~~~~~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~-~------------ 764 (1022)
+++.+.+ +..++|+||||+|+ +++|+||||||||||+|+|+|++ +|++|+|.++|.++ .
T Consensus 4 ~~l~~~~--~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~---~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 78 (252)
T TIGR03005 4 SDVTKRF--GILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLE---PIDEGQIQVEGEQLYHMPGRNGPLVPAD 78 (252)
T ss_pred EEEEEEe--CCeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC---CCCceEEEECCEEccccccccccccccc
Confidence 3444444 34679999999998 99999999999999999999999 99999999998554 1
Q ss_pred ----hhhcCceEEEcCCCCCCccccccccchHHHHhcccc--------chHHHHHHHH-HhcCCccccCCCcCCch-HHH
Q 001709 765 ----EGIAGGLCYCDSAGVNLQELTMEAARFKDEMWMGIR--------DLSRKTDLIV-LVHNLSHKIPRYNYSSA-SGQ 830 (1022)
Q Consensus 765 ----~~lr~~IGyV~Q~~~~~~~lTV~~~~~~ENI~~g~~--------~~~~~v~~~L-~v~gL~~~~~r~~~~LS-Gqr 830 (1022)
...++.++|++|+...++.+|+ .||+.++.. ...+++.+++ .+ |+.+..++.+.+|| |||
T Consensus 79 ~~~~~~~~~~i~~v~q~~~~~~~~tv-----~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~-gl~~~~~~~~~~LS~G~~ 152 (252)
T TIGR03005 79 EKHLRQMRNKIGMVFQSFNLFPHKTV-----LDNVTEAPVLVLGMARAEAEKRAMELLDMV-GLADKADHMPAQLSGGQQ 152 (252)
T ss_pred hhHHHHHhhCeEEEecCcccCCCCcH-----HHHHHHHHHHhcCCCHHHHHHHHHHHHHHc-CChhHhhcChhhcCHHHH
Confidence 2356789999995444778999 999987421 1234577788 77 99999999999999 999
Q ss_pred HHHHHH---------hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEe
Q 001709 831 QQPALS---------LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVIN 886 (1022)
Q Consensus 831 QRvaIA---------LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~ 886 (1022)
||++|| |||||||++ +|...+..+...+.+..+....++++++
T Consensus 153 qrv~laral~~~p~llllDEP~~~-------------LD~~~~~~l~~~l~~~~~~~~~tiiivs 204 (252)
T TIGR03005 153 QRVAIARALAMRPKVMLFDEVTSA-------------LDPELVGEVLNVIRRLASEHDLTMLLVT 204 (252)
T ss_pred HHHHHHHHHHcCCCEEEEeCCccc-------------CCHHHHHHHHHHHHHHHHhcCcEEEEEe
Confidence 999999 999999997 6777777766666544443344566665
No 141
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=5.5e-26 Score=246.24 Aligned_cols=168 Identities=14% Similarity=0.149 Sum_probs=130.3
Q ss_pred ccccCceeEEEEecCCCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCc---eEEEEccccc----h
Q 001709 695 IRPEGLSDVFIFCTSDFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTIN---SGNLDAEADD----Q 764 (1022)
Q Consensus 695 i~~~~l~~~~~~~~~~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~Pts---G~I~idg~~~----~ 764 (1022)
+++++++ +.+.....++|++|||+|+ +++|+||||||||||+++|+|++ +|++ |+|+++|.++ .
T Consensus 6 l~i~~l~---~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~---~p~~g~~G~i~i~g~~~~~~~~ 79 (282)
T PRK13640 6 VEFKHVS---FTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLL---LPDDNPNSKITVDGITLTAKTV 79 (282)
T ss_pred EEEEEEE---EEcCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhccc---CCCCCCCcEEEECCEECCcCCH
Confidence 4544444 3332223469999999999 99999999999999999999999 9987 8999998665 2
Q ss_pred hhhcCceEEEcCCCC-CCccccccccchHHHHhccccc-------hHHHHHHHH-HhcCCccccCCCcCCch-HHHHHHH
Q 001709 765 EGIAGGLCYCDSAGV-NLQELTMEAARFKDEMWMGIRD-------LSRKTDLIV-LVHNLSHKIPRYNYSSA-SGQQQPA 834 (1022)
Q Consensus 765 ~~lr~~IGyV~Q~~~-~~~~lTV~~~~~~ENI~~g~~~-------~~~~v~~~L-~v~gL~~~~~r~~~~LS-GqrQRva 834 (1022)
..++++||||||+.. .++.+|| .|||.|+... ..+++++++ .+ ||.+..++++.+|| |||||++
T Consensus 80 ~~~~~~ig~v~q~~~~~~~~~tv-----~enl~~~~~~~~~~~~~~~~~~~~~l~~~-~L~~~~~~~~~~LS~G~~qrv~ 153 (282)
T PRK13640 80 WDIREKVGIVFQNPDNQFVGATV-----GDDVAFGLENRAVPRPEMIKIVRDVLADV-GMLDYIDSEPANLSGGQKQRVA 153 (282)
T ss_pred HHHHhheEEEEECHHHhhccCCH-----HHHHHhhHHhCCCCHHHHHHHHHHHHHHC-CChhHhcCCcccCCHHHHHHHH
Confidence 345678999999543 3677899 9999876431 235577888 77 99999999999999 9999999
Q ss_pred HH---------hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEec
Q 001709 835 LS---------LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINS 887 (1022)
Q Consensus 835 IA---------LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~ 887 (1022)
|| |||||||++ +|...+..+...+.+...+...++++++|
T Consensus 154 laral~~~P~llllDEPt~g-------------LD~~~~~~l~~~l~~l~~~~g~tvli~tH 202 (282)
T PRK13640 154 IAGILAVEPKIIILDESTSM-------------LDPAGKEQILKLIRKLKKKNNLTVISITH 202 (282)
T ss_pred HHHHHHcCCCEEEEECCccc-------------CCHHHHHHHHHHHHHHHHhcCCEEEEEec
Confidence 99 999999996 77777777776664443332345666653
No 142
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=4.6e-26 Score=247.38 Aligned_cols=168 Identities=16% Similarity=0.137 Sum_probs=128.1
Q ss_pred eeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc-h-------hhhcCceEEEcCCCC-
Q 001709 712 TTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD-Q-------EGIAGGLCYCDSAGV- 779 (1022)
Q Consensus 712 ~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~-~-------~~lr~~IGyV~Q~~~- 779 (1022)
+.+|+||||+|+ +++|+||||||||||+|+|+|++ +|++|+|.++|.++ . ...++.|||+||++.
T Consensus 20 ~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~---~p~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~ 96 (287)
T PRK13641 20 KKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALL---KPSSGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEA 96 (287)
T ss_pred ccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCC---CCCCcEEEECCEECccccccchHHHHHhceEEEEeChhh
Confidence 469999999998 99999999999999999999999 99999999998654 1 235678999999543
Q ss_pred CCccccccccchHHHHhcccc-------chHHHHHHHH-HhcCCc-cccCCCcCCch-HHHHHHHHH---------hhhc
Q 001709 780 NLQELTMEAARFKDEMWMGIR-------DLSRKTDLIV-LVHNLS-HKIPRYNYSSA-SGQQQPALS---------LLLN 840 (1022)
Q Consensus 780 ~~~~lTV~~~~~~ENI~~g~~-------~~~~~v~~~L-~v~gL~-~~~~r~~~~LS-GqrQRvaIA---------LLLD 840 (1022)
.++.+|+ .|||.++.. ...+++++++ .+ ||. ++.++++.+|| |||||++|| ||||
T Consensus 97 ~~~~~tv-----~e~l~~~~~~~~~~~~~~~~~~~~~l~~~-gL~~~~~~~~~~~LSgGq~qrl~laral~~~p~lLlLD 170 (287)
T PRK13641 97 QLFENTV-----LKDVEFGPKNFGFSEDEAKEKALKWLKKV-GLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLD 170 (287)
T ss_pred hhccchH-----HHHHHHHHHHcCCCHHHHHHHHHHHHHHc-CCChhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 2445899 999987532 1345678888 77 997 68899999999 999999999 9999
Q ss_pred cccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCC-cccccCccccccc
Q 001709 841 EAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCP-YVMPGAVSASLSW 902 (1022)
Q Consensus 841 EPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~-~V~~~~~~a~~l~ 902 (1022)
|||++ +|...+..+...+. .+.....++++++|.. .+...++.++++.
T Consensus 171 EPt~g-------------LD~~~~~~l~~~l~-~l~~~g~tvlivsH~~~~~~~~~d~v~~l~ 219 (287)
T PRK13641 171 EPAAG-------------LDPEGRKEMMQLFK-DYQKAGHTVILVTHNMDDVAEYADDVLVLE 219 (287)
T ss_pred CCCCC-------------CCHHHHHHHHHHHH-HHHhCCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 99997 67666666665554 4444434555554332 2334445444443
No 143
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.93 E-value=3.7e-26 Score=269.45 Aligned_cols=179 Identities=16% Similarity=0.184 Sum_probs=139.7
Q ss_pred ceeEEEEecCCCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc----hhhhcCceE
Q 001709 700 LSDVFIFCTSDFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD----QEGIAGGLC 772 (1022)
Q Consensus 700 l~~~~~~~~~~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~----~~~lr~~IG 772 (1022)
++++.+.|..+..++|+||||+++ +++|+||||||||||+|+|+|++ +|++|+|++||.++ ...+|+.|+
T Consensus 341 ~~~v~f~y~~~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~---~p~~G~I~i~g~~i~~~~~~~~r~~i~ 417 (574)
T PRK11160 341 LNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAW---DPQQGEILLNGQPIADYSEAALRQAIS 417 (574)
T ss_pred EEEEEEECCCCCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCC---CCCCceEEECCEEhhhCCHHHHHhhee
Confidence 666666664434579999999999 99999999999999999999999 99999999998654 567889999
Q ss_pred EEcCCCCCCccccccccchHHHHhccccc-hHHHHHHHH-HhcCCccccC----------CCcCCch-HHHHHHHHH---
Q 001709 773 YCDSAGVNLQELTMEAARFKDEMWMGIRD-LSRKTDLIV-LVHNLSHKIP----------RYNYSSA-SGQQQPALS--- 836 (1022)
Q Consensus 773 yV~Q~~~~~~~lTV~~~~~~ENI~~g~~~-~~~~v~~~L-~v~gL~~~~~----------r~~~~LS-GqrQRvaIA--- 836 (1022)
||+| ++.++..|+ +|||.++..+ .++.+.+++ .+ ++.++.+ +....|| |||||++||
T Consensus 418 ~v~Q-~~~lf~~ti-----~~Ni~~~~~~~~~~~i~~al~~~-~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARal 490 (574)
T PRK11160 418 VVSQ-RVHLFSATL-----RDNLLLAAPNASDEALIEVLQQV-GLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARAL 490 (574)
T ss_pred EEcc-cchhhcccH-----HHHhhcCCCccCHHHHHHHHHHc-CCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHH
Confidence 9999 555555899 9999998653 456677777 65 7666544 4677899 999999999
Q ss_pred ------hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCCcccccCcccccccC
Q 001709 837 ------LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCPYVMPGAVSASLSWG 903 (1022)
Q Consensus 837 ------LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~~V~~~~~~a~~l~~ 903 (1022)
||||||||+ +|..+...+...+.+.. ...+++++.|-...+..+|..+.+.+
T Consensus 491 l~~~~ililDE~ts~-------------lD~~t~~~i~~~l~~~~--~~~tviiitHr~~~~~~~d~i~~l~~ 548 (574)
T PRK11160 491 LHDAPLLLLDEPTEG-------------LDAETERQILELLAEHA--QNKTVLMITHRLTGLEQFDRICVMDN 548 (574)
T ss_pred hcCCCEEEEeCCccc-------------CCHHHHHHHHHHHHHHc--CCCEEEEEecChhHHHhCCEEEEEeC
Confidence 999999997 77777777666664432 23577777666555555666555543
No 144
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=4.8e-26 Score=251.81 Aligned_cols=167 Identities=13% Similarity=0.199 Sum_probs=129.6
Q ss_pred cccccCceeEEEEecCC---CeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc----
Q 001709 694 FIRPEGLSDVFIFCTSD---FTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD---- 763 (1022)
Q Consensus 694 ~i~~~~l~~~~~~~~~~---~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~---- 763 (1022)
.+.++++ .+.|... ..++|+||||+|+ +++|+|+||||||||+|+|+|++ +|++|+|+++|.++
T Consensus 21 ~l~~~nl---~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~---~p~~G~I~i~g~~~~~~~ 94 (320)
T PRK13631 21 ILRVKNL---YCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLI---KSKYGTIQVGDIYIGDKK 94 (320)
T ss_pred eEEEEeE---EEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC---CCCCCeEEECCEEccccc
Confidence 3554444 4444321 2469999999999 99999999999999999999999 99999999997443
Q ss_pred ----------------hhhhcCceEEEcCCCC-CCccccccccchHHHHhcccc----c---hHHHHHHHH-HhcCCc-c
Q 001709 764 ----------------QEGIAGGLCYCDSAGV-NLQELTMEAARFKDEMWMGIR----D---LSRKTDLIV-LVHNLS-H 817 (1022)
Q Consensus 764 ----------------~~~lr~~IGyV~Q~~~-~~~~lTV~~~~~~ENI~~g~~----~---~~~~v~~~L-~v~gL~-~ 817 (1022)
...+++.||||||++. .++..|+ +|||.|+.. . ..+++.+++ .+ ||. +
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv-----~eni~~~~~~~~~~~~~~~~~~~~~l~~~-gL~~~ 168 (320)
T PRK13631 95 NNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTI-----EKDIMFGPVALGVKKSEAKKLAKFYLNKM-GLDDS 168 (320)
T ss_pred ccccccccccccccchHHHHHhcEEEEEECchhccccchH-----HHHHHhhHHhcCCCHHHHHHHHHHHHHHc-CCChh
Confidence 1245788999999543 3444699 999988753 1 345677888 77 996 6
Q ss_pred ccCCCcCCch-HHHHHHHHH---------hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEe
Q 001709 818 KIPRYNYSSA-SGQQQPALS---------LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVIN 886 (1022)
Q Consensus 818 ~~~r~~~~LS-GqrQRvaIA---------LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~ 886 (1022)
+.++++.+|| |||||++|| |||||||++ +|...+..+...+.+. .....++++++
T Consensus 169 ~~~~~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsg-------------LD~~~~~~l~~~L~~l-~~~g~Tiiivt 233 (320)
T PRK13631 169 YLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAG-------------LDPKGEHEMMQLILDA-KANNKTVFVIT 233 (320)
T ss_pred HhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccC-------------CCHHHHHHHHHHHHHH-HHCCCEEEEEe
Confidence 8999999999 999999999 999999997 7777777777766544 33344556665
No 145
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=6.9e-26 Score=239.40 Aligned_cols=153 Identities=17% Similarity=0.157 Sum_probs=122.6
Q ss_pred CeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc----hhhhcCceEEEcCCCCCCcc
Q 001709 711 FTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD----QEGIAGGLCYCDSAGVNLQE 783 (1022)
Q Consensus 711 ~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~----~~~lr~~IGyV~Q~~~~~~~ 783 (1022)
..++|+|+||+|. +++|+||||||||||+|+|+|++ +|++|+|.+++.++ ...+++.++|++|+...++
T Consensus 15 ~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~---~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~- 90 (241)
T PRK14250 15 GKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLI---DPTEGSILIDGVDIKTIDVIDLRRKIGMVFQQPHLFE- 90 (241)
T ss_pred CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC---CCCCcEEEECCEEhhhcChHHhhhcEEEEecCchhch-
Confidence 4679999999998 99999999999999999999999 99999999998654 2345678999999533355
Q ss_pred ccccccchHHHHhcccc---chHHHHHHHH-HhcCCc-cccCCCcCCch-HHHHHHHHH---------hhhccccCCChh
Q 001709 784 LTMEAARFKDEMWMGIR---DLSRKTDLIV-LVHNLS-HKIPRYNYSSA-SGQQQPALS---------LLLNEAKSLGIP 848 (1022)
Q Consensus 784 lTV~~~~~~ENI~~g~~---~~~~~v~~~L-~v~gL~-~~~~r~~~~LS-GqrQRvaIA---------LLLDEPTSad~~ 848 (1022)
.|+ +||+.++.. ....++.+++ .+ ||. +..++++.+|| |||||++|| |||||||++
T Consensus 91 ~tv-----~e~l~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~--- 161 (241)
T PRK14250 91 GTV-----KDNIEYGPMLKGEKNVDVEYYLSIV-GLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSA--- 161 (241)
T ss_pred hhH-----HHHHhcchhhcCcHHHHHHHHHHHc-CCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccc---
Confidence 799 999987542 1234677788 77 996 68899999999 999999999 999999997
Q ss_pred HHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEe
Q 001709 849 WVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVIN 886 (1022)
Q Consensus 849 ~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~ 886 (1022)
+|...+..+...+.+..+....++++++
T Consensus 162 ----------LD~~~~~~l~~~l~~~~~~~g~tii~~s 189 (241)
T PRK14250 162 ----------LDPTSTEIIEELIVKLKNKMNLTVIWIT 189 (241)
T ss_pred ----------CCHHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 7777777766666543332344666665
No 146
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.93 E-value=1.2e-26 Score=249.01 Aligned_cols=163 Identities=17% Similarity=0.161 Sum_probs=129.3
Q ss_pred eeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEcccc-------c-hhhhcCceEEEcCCCCC-Cccc
Q 001709 717 EVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEAD-------D-QEGIAGGLCYCDSAGVN-LQEL 784 (1022)
Q Consensus 717 dVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~-------~-~~~lr~~IGyV~Q~~~~-~~~l 784 (1022)
+++|+.+ ++||.|+||||||||+|+|+||. +|++|.|.+||.- + ..--+|+|||||| ++. ||++
T Consensus 16 ~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~---rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQ-DARLFpH~ 91 (352)
T COG4148 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLT---RPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQ-DARLFPHY 91 (352)
T ss_pred EEeccCCCCceEEEecCCCCChhhHHHHHhccC---CccccEEEECCEEeecccCCcccChhhheeeeEee-ccccccce
Confidence 4666666 99999999999999999999999 9999999999632 2 2334788999999 555 9999
Q ss_pred cccccchHHHHhccccc-hHHHHHHHH-HhcCCccccCCCcCCch-HHHHHHHHH---------hhhccccCCChhHHHH
Q 001709 785 TMEAARFKDEMWMGIRD-LSRKTDLIV-LVHNLSHKIPRYNYSSA-SGQQQPALS---------LLLNEAKSLGIPWVLA 852 (1022)
Q Consensus 785 TV~~~~~~ENI~~g~~~-~~~~v~~~L-~v~gL~~~~~r~~~~LS-GqrQRvaIA---------LLLDEPTSad~~~v~~ 852 (1022)
|| +.|+.||... .....+.++ ++ |+.|+++|+|.+|| |+||||||+ ||||||.|+
T Consensus 92 tV-----rgNL~YG~~~~~~~~fd~iv~lL-GI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaS------- 158 (352)
T COG4148 92 TV-----RGNLRYGMWKSMRAQFDQLVALL-GIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLAS------- 158 (352)
T ss_pred EE-----ecchhhhhcccchHhHHHHHHHh-CcHHHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCchhh-------
Confidence 99 9999999875 356788888 77 99999999999999 999999999 999999986
Q ss_pred HhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCCcccccCcccccccCCCCCC
Q 001709 853 ITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCPYVMPGAVSASLSWGASGGD 908 (1022)
Q Consensus 853 I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~~V~~~~~~a~~l~~~~~~~ 908 (1022)
+|...+.+++-.+-+..++..--++. |.|+.+|+.-+++++..+
T Consensus 159 ------LD~~RK~EilpylERL~~e~~IPIlY------VSHS~~Ev~RLAd~vV~l 202 (352)
T COG4148 159 ------LDLPRKREILPYLERLRDEINIPILY------VSHSLDEVLRLADRVVVL 202 (352)
T ss_pred ------cccchhhHHHHHHHHHHHhcCCCEEE------EecCHHHHHhhhheEEEe
Confidence 45444555555444444444434443 447777777777777653
No 147
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.93 E-value=7.2e-26 Score=238.25 Aligned_cols=152 Identities=14% Similarity=0.201 Sum_probs=122.8
Q ss_pred CeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc----hh-hhcCceEEEcCCCCCCc
Q 001709 711 FTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD----QE-GIAGGLCYCDSAGVNLQ 782 (1022)
Q Consensus 711 ~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~----~~-~lr~~IGyV~Q~~~~~~ 782 (1022)
++++|++|||+|+ +++|+||||||||||||+|+|++ +|++|+|.+++.++ .. ..++.++|+||+...++
T Consensus 14 ~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~---~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~ 90 (242)
T TIGR03411 14 GFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKT---RPDEGSVLFGGTDLTGLPEHQIARAGIGRKFQKPTVFE 90 (242)
T ss_pred CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC---CCCCCeEEECCeecCCCCHHHHHhcCeeEeccccccCC
Confidence 4679999999998 99999999999999999999999 99999999998654 11 23457999999544488
Q ss_pred cccccccchHHHHhcccc---------------chHHHHHHHH-HhcCCccccCCCcCCch-HHHHHHHHH---------
Q 001709 783 ELTMEAARFKDEMWMGIR---------------DLSRKTDLIV-LVHNLSHKIPRYNYSSA-SGQQQPALS--------- 836 (1022)
Q Consensus 783 ~lTV~~~~~~ENI~~g~~---------------~~~~~v~~~L-~v~gL~~~~~r~~~~LS-GqrQRvaIA--------- 836 (1022)
.+|+ +||+.++.. ...+++++++ .+ |+.+..++++.+|| |||||++||
T Consensus 91 ~~tv-----~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~LS~Ge~qrv~laral~~~p~~ 164 (242)
T TIGR03411 91 NLTV-----FENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETI-GLADEADRLAGLLSHGQKQWLEIGMLLMQDPKL 164 (242)
T ss_pred CCCH-----HHHHHHhhhcccccccccccccHHHHHHHHHHHHHHc-CCchhhcCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 8899 999987531 1244677888 77 99999999999999 999999999
Q ss_pred hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEe
Q 001709 837 LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVIN 886 (1022)
Q Consensus 837 LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~ 886 (1022)
|||||||++ +|...+..+...+. .+.. ..++++++
T Consensus 165 lllDEPt~~-------------LD~~~~~~l~~~l~-~~~~-~~tii~~s 199 (242)
T TIGR03411 165 LLLDEPVAG-------------MTDEETEKTAELLK-SLAG-KHSVVVVE 199 (242)
T ss_pred EEecCCccC-------------CCHHHHHHHHHHHH-HHhc-CCEEEEEE
Confidence 999999997 77777777666554 3433 34556555
No 148
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.93 E-value=9.3e-26 Score=240.25 Aligned_cols=167 Identities=13% Similarity=0.134 Sum_probs=129.9
Q ss_pred ccccCceeEEEEecCCCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc-h------
Q 001709 695 IRPEGLSDVFIFCTSDFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD-Q------ 764 (1022)
Q Consensus 695 i~~~~l~~~~~~~~~~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~-~------ 764 (1022)
+++++++. .+ +.+++|+||||+|+ +++|+|+||||||||+++|+|++ +|++|+|.+++.++ .
T Consensus 6 l~~~~l~~---~~--~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~---~~~~G~i~~~g~~~~~~~~~~~ 77 (257)
T PRK10619 6 LNVIDLHK---RY--GEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLE---KPSEGSIVVNGQTINLVRDKDG 77 (257)
T ss_pred EEEeeeEE---EE--CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC---CCCCeEEEECCEEccccccccc
Confidence 55455553 33 34679999999999 99999999999999999999999 99999999997543 1
Q ss_pred ----------hhhcCceEEEcCCCCCCccccccccchHHHHhcccc--------chHHHHHHHH-HhcCCcccc-CCCcC
Q 001709 765 ----------EGIAGGLCYCDSAGVNLQELTMEAARFKDEMWMGIR--------DLSRKTDLIV-LVHNLSHKI-PRYNY 824 (1022)
Q Consensus 765 ----------~~lr~~IGyV~Q~~~~~~~lTV~~~~~~ENI~~g~~--------~~~~~v~~~L-~v~gL~~~~-~r~~~ 824 (1022)
...++.|+||+|+...++.+|+ +||+.++.. ...+++.+++ .+ ||.+.. ++++.
T Consensus 78 ~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv-----~enl~~~~~~~~~~~~~~~~~~~~~~l~~~-gl~~~~~~~~~~ 151 (257)
T PRK10619 78 QLKVADKNQLRLLRTRLTMVFQHFNLWSHMTV-----LENVMEAPIQVLGLSKQEARERAVKYLAKV-GIDERAQGKYPV 151 (257)
T ss_pred ccccccchHHHHHhhceEEEecCcccCCCCcH-----HHHHHHHHHHhCCCCHHHHHHHHHHHHHHc-CCChhhhhCCcc
Confidence 2346789999995444777899 999976431 1345677888 77 998764 89999
Q ss_pred Cch-HHHHHHHHH---------hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCC
Q 001709 825 SSA-SGQQQPALS---------LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCP 889 (1022)
Q Consensus 825 ~LS-GqrQRvaIA---------LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~ 889 (1022)
+|| |||||++|| |||||||++ +|...+..+...+.+ +.....++++++|..
T Consensus 152 ~LS~G~~qrv~laral~~~p~llllDEPt~~-------------LD~~~~~~l~~~l~~-l~~~g~tiiivsH~~ 212 (257)
T PRK10619 152 HLSGGQQQRVSIARALAMEPEVLLFDEPTSA-------------LDPELVGEVLRIMQQ-LAEEGKTMVVVTHEM 212 (257)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCccc-------------CCHHHHHHHHHHHHH-HHhcCCEEEEEeCCH
Confidence 999 999999999 999999997 777777777766544 444445666666433
No 149
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.93 E-value=1.1e-25 Score=232.84 Aligned_cols=153 Identities=16% Similarity=0.105 Sum_probs=124.3
Q ss_pred CeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc-hhhhcCceEEEcCCCCCCccccc
Q 001709 711 FTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD-QEGIAGGLCYCDSAGVNLQELTM 786 (1022)
Q Consensus 711 ~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~-~~~lr~~IGyV~Q~~~~~~~lTV 786 (1022)
...+|+++||+|+ +++|+||||||||||+++|+|++ +|++|+|.++|.+. ....++.++|++|....++.+|+
T Consensus 14 ~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~---~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~tv 90 (207)
T PRK13539 14 GRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLL---PPAAGTIKLDGGDIDDPDVAEACHYLGHRNAMKPALTV 90 (207)
T ss_pred CeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC---CCCCceEEECCEeCcchhhHhhcEEecCCCcCCCCCcH
Confidence 4579999999998 99999999999999999999999 99999999998665 22267789999984444778999
Q ss_pred cccchHHHHhcccc---chHHHHHHHH-HhcCCccccCCCcCCch-HHHHHHHHH---------hhhccccCCChhHHHH
Q 001709 787 EAARFKDEMWMGIR---DLSRKTDLIV-LVHNLSHKIPRYNYSSA-SGQQQPALS---------LLLNEAKSLGIPWVLA 852 (1022)
Q Consensus 787 ~~~~~~ENI~~g~~---~~~~~v~~~L-~v~gL~~~~~r~~~~LS-GqrQRvaIA---------LLLDEPTSad~~~v~~ 852 (1022)
.||+.+... ...+++.+++ .+ ||.+..++++.+|| |||||++|| |||||||++
T Consensus 91 -----~~~l~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~------- 157 (207)
T PRK13539 91 -----AENLEFWAAFLGGEELDIAAALEAV-GLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAA------- 157 (207)
T ss_pred -----HHHHHHHHHhcCCcHHHHHHHHHHc-CCHHHHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCccc-------
Confidence 999976432 1245578888 87 99888899999999 999999999 999999996
Q ss_pred HhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEe
Q 001709 853 ITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVIN 886 (1022)
Q Consensus 853 I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~ 886 (1022)
+|...+..+...+.+. .....++++++
T Consensus 158 ------LD~~~~~~l~~~l~~~-~~~~~tiii~s 184 (207)
T PRK13539 158 ------LDAAAVALFAELIRAH-LAQGGIVIAAT 184 (207)
T ss_pred ------CCHHHHHHHHHHHHHH-HHCCCEEEEEe
Confidence 7777777776666443 33444555555
No 150
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.93 E-value=4.5e-26 Score=267.84 Aligned_cols=180 Identities=17% Similarity=0.173 Sum_probs=139.3
Q ss_pred ceeEEEEecCCCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc----hhhhcCceE
Q 001709 700 LSDVFIFCTSDFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD----QEGIAGGLC 772 (1022)
Q Consensus 700 l~~~~~~~~~~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~----~~~lr~~IG 772 (1022)
++++.+.|..+..++|+|+||+|+ .++|+|+||||||||+|+|+|++ +|++|+|.+||.++ ...+++.|+
T Consensus 344 ~~~vsf~y~~~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~---~p~~G~I~i~g~~i~~~~~~~~~~~i~ 420 (582)
T PRK11176 344 FRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFY---DIDEGEILLDGHDLRDYTLASLRNQVA 420 (582)
T ss_pred EEEEEEecCCCCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhcc---CCCCceEEECCEEhhhcCHHHHHhhce
Confidence 566666654444679999999998 99999999999999999999999 99999999998664 567889999
Q ss_pred EEcCCCCCCccccccccchHHHHhccccc--hHHHHHHHH-Hh----------cCCccccCCCcCCch-HHHHHHHHH--
Q 001709 773 YCDSAGVNLQELTMEAARFKDEMWMGIRD--LSRKTDLIV-LV----------HNLSHKIPRYNYSSA-SGQQQPALS-- 836 (1022)
Q Consensus 773 yV~Q~~~~~~~lTV~~~~~~ENI~~g~~~--~~~~v~~~L-~v----------~gL~~~~~r~~~~LS-GqrQRvaIA-- 836 (1022)
||+| ++.++..|+ +|||.++..+ .++++.+++ .+ .|++...++...+|| |||||++||
T Consensus 421 ~v~Q-~~~lf~~Ti-----~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARa 494 (582)
T PRK11176 421 LVSQ-NVHLFNDTI-----ANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARA 494 (582)
T ss_pred EEcc-CceeecchH-----HHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHH
Confidence 9999 555445899 9999998532 344555555 43 234445556667899 999999999
Q ss_pred -------hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCCcccccCcccccccC
Q 001709 837 -------LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCPYVMPGAVSASLSWG 903 (1022)
Q Consensus 837 -------LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~~V~~~~~~a~~l~~ 903 (1022)
||||||||+ +|..+...+...+.+. . ...|+++|+|....+..+|..+.+.+
T Consensus 495 ll~~~~ililDEptsa-------------LD~~t~~~i~~~l~~~-~-~~~tvI~VtHr~~~~~~~D~Ii~l~~ 553 (582)
T PRK11176 495 LLRDSPILILDEATSA-------------LDTESERAIQAALDEL-Q-KNRTSLVIAHRLSTIEKADEILVVED 553 (582)
T ss_pred HHhCCCEEEEECcccc-------------CCHHHHHHHHHHHHHH-h-CCCEEEEEecchHHHHhCCEEEEEEC
Confidence 999999997 7777766666555443 2 23577888877777777777776654
No 151
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.93 E-value=1.1e-25 Score=240.57 Aligned_cols=157 Identities=20% Similarity=0.158 Sum_probs=125.1
Q ss_pred CCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc----hhhhcCceEEEcCCCCCCc
Q 001709 710 DFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD----QEGIAGGLCYCDSAGVNLQ 782 (1022)
Q Consensus 710 ~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~----~~~lr~~IGyV~Q~~~~~~ 782 (1022)
+++++|+||||+|+ +++|+||||||||||+++|+|++ +|++|+|.+++.++ ...+++.++|++|+...++
T Consensus 13 ~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~---~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~ 89 (258)
T PRK13548 13 GGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGEL---SPDSGEVRLNGRPLADWSPAELARRRAVLPQHSSLSF 89 (258)
T ss_pred CCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC---CCCCCEEEECCEEcccCCHHHhhhheEEEccCCcCCC
Confidence 34679999999998 99999999999999999999999 99999999998654 2345678999999544467
Q ss_pred cccccccchHHHHhccccc-------hHHHHHHHH-HhcCCccccCCCcCCch-HHHHHHHHH---------------hh
Q 001709 783 ELTMEAARFKDEMWMGIRD-------LSRKTDLIV-LVHNLSHKIPRYNYSSA-SGQQQPALS---------------LL 838 (1022)
Q Consensus 783 ~lTV~~~~~~ENI~~g~~~-------~~~~v~~~L-~v~gL~~~~~r~~~~LS-GqrQRvaIA---------------LL 838 (1022)
.+|+ +||+.++... ..+++.+++ .+ ||.+..++++.+|| |||||++|| ||
T Consensus 90 ~~tv-----~e~l~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~LSgGe~qrv~la~al~~~~~~~~~p~lll 163 (258)
T PRK13548 90 PFTV-----EEVVAMGRAPHGLSRAEDDALVAAALAQV-DLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLL 163 (258)
T ss_pred CCCH-----HHHHHhhhcccCCCcHHHHHHHHHHHHHc-CCHhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEE
Confidence 7899 9999875421 234577788 77 99999999999999 999999999 36
Q ss_pred hccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecC
Q 001709 839 LNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSC 888 (1022)
Q Consensus 839 LDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~ 888 (1022)
|||||++ +|...+..+...+.+..+....++++++|.
T Consensus 164 LDEPt~~-------------LD~~~~~~l~~~l~~~~~~~~~tiii~sH~ 200 (258)
T PRK13548 164 LDEPTSA-------------LDLAHQHHVLRLARQLAHERGLAVIVVLHD 200 (258)
T ss_pred EeCCccc-------------CCHHHHHHHHHHHHHHHHhcCCEEEEEECC
Confidence 8999996 777777777766654432444466666533
No 152
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=8.5e-26 Score=250.48 Aligned_cols=153 Identities=14% Similarity=0.117 Sum_probs=122.8
Q ss_pred eeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc-------hhhhcCceEEEcCCCC--
Q 001709 712 TTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD-------QEGIAGGLCYCDSAGV-- 779 (1022)
Q Consensus 712 ~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~-------~~~lr~~IGyV~Q~~~-- 779 (1022)
..+|+||||+|+ +++|+|+||||||||+++|+|++ +|++|+|.++|.++ ...+++.|+||||++.
T Consensus 28 ~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~---~p~~G~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~ 104 (327)
T PRK11308 28 VKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIE---TPTGGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGS 104 (327)
T ss_pred eeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCC---CCCCcEEEECCEEcCcCCHHHHHHHhCCEEEEEcCchhh
Confidence 579999999999 99999999999999999999999 99999999998664 1235678999999643
Q ss_pred CCccccccccchHHHHhccc------c--chHHHHHHHH-HhcCCc-cccCCCcCCch-HHHHHHHHH---------hhh
Q 001709 780 NLQELTMEAARFKDEMWMGI------R--DLSRKTDLIV-LVHNLS-HKIPRYNYSSA-SGQQQPALS---------LLL 839 (1022)
Q Consensus 780 ~~~~lTV~~~~~~ENI~~g~------~--~~~~~v~~~L-~v~gL~-~~~~r~~~~LS-GqrQRvaIA---------LLL 839 (1022)
+.+.+|+ .+++.++. . ...+++.+++ .+ ||. ...++++.+|| |||||++|| |||
T Consensus 105 l~p~~~v-----~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~-gL~~~~~~~~p~~LSgGq~QRv~iArAL~~~P~lLil 178 (327)
T PRK11308 105 LNPRKKV-----GQILEEPLLINTSLSAAERREKALAMMAKV-GLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVA 178 (327)
T ss_pred cCCccCH-----HHHHHHHHHHccCCCHHHHHHHHHHHHHHC-CCChHHhcCCCccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 3677899 77775321 1 1345678888 88 996 47899999999 999999999 999
Q ss_pred ccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEe
Q 001709 840 NEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVIN 886 (1022)
Q Consensus 840 DEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~ 886 (1022)
||||++ +|...+..++..+.+..++...++++++
T Consensus 179 DEPts~-------------LD~~~~~~i~~lL~~l~~~~g~til~iT 212 (327)
T PRK11308 179 DEPVSA-------------LDVSVQAQVLNLMMDLQQELGLSYVFIS 212 (327)
T ss_pred ECCCcc-------------CCHHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 999997 7777777777766554443344666665
No 153
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.93 E-value=1e-25 Score=240.64 Aligned_cols=155 Identities=17% Similarity=0.159 Sum_probs=124.1
Q ss_pred CCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCC---ceEEEEccccc-h--------hhhcCceEEE
Q 001709 710 DFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTI---NSGNLDAEADD-Q--------EGIAGGLCYC 774 (1022)
Q Consensus 710 ~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~Pt---sG~I~idg~~~-~--------~~lr~~IGyV 774 (1022)
++.++|++|||++. +++|+||||||||||+++|+|++ +|+ +|+|.++|.++ . ..++++++|+
T Consensus 15 ~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~---~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~i~~~ 91 (262)
T PRK09984 15 NQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLI---TGDKSAGSHIELLGRTVQREGRLARDIRKSRANTGYI 91 (262)
T ss_pred CCeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccC---CCCCCCceEEEECCEecccccccchhHHHHHhheEEE
Confidence 34689999999998 99999999999999999999999 876 49999998654 1 2346789999
Q ss_pred cCCCCCCccccccccchHHHHhcccc---------------chHHHHHHHH-HhcCCccccCCCcCCch-HHHHHHHHH-
Q 001709 775 DSAGVNLQELTMEAARFKDEMWMGIR---------------DLSRKTDLIV-LVHNLSHKIPRYNYSSA-SGQQQPALS- 836 (1022)
Q Consensus 775 ~Q~~~~~~~lTV~~~~~~ENI~~g~~---------------~~~~~v~~~L-~v~gL~~~~~r~~~~LS-GqrQRvaIA- 836 (1022)
||+...++.+|+ .||+.++.. ...+++.+++ .+ ||.+..++.+.+|| |||||++||
T Consensus 92 ~q~~~~~~~~tv-----~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~LS~G~~qrv~lar 165 (262)
T PRK09984 92 FQQFNLVNRLSV-----LENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRV-GMVHFAHQRVSTLSGGQQQRVAIAR 165 (262)
T ss_pred ccccccccCCcH-----HHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHc-CCHHHHhCCccccCHHHHHHHHHHH
Confidence 995444788999 999987531 1234677888 77 99988999999999 999999999
Q ss_pred --------hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEe
Q 001709 837 --------LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVIN 886 (1022)
Q Consensus 837 --------LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~ 886 (1022)
|||||||++ +|...+..+...+.+..+....++++++
T Consensus 166 al~~~p~llllDEPt~~-------------LD~~~~~~l~~~l~~~~~~~g~tvii~t 210 (262)
T PRK09984 166 ALMQQAKVILADEPIAS-------------LDPESARIVMDTLRDINQNDGITVVVTL 210 (262)
T ss_pred HHhcCCCEEEecCcccc-------------CCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 999999996 7777777777666554333334556555
No 154
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=1e-25 Score=243.33 Aligned_cols=181 Identities=13% Similarity=0.115 Sum_probs=136.6
Q ss_pred ceeEEEEecCC-CeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc----hhhhcCce
Q 001709 700 LSDVFIFCTSD-FTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD----QEGIAGGL 771 (1022)
Q Consensus 700 l~~~~~~~~~~-~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~----~~~lr~~I 771 (1022)
++++.+.+... ..++|+||||+|+ +++|+|+||||||||+++|+|++ +|++|+|+++|.++ ...+++.|
T Consensus 7 ~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~---~~~~G~i~~~g~~i~~~~~~~~~~~i 83 (277)
T PRK13642 7 VENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLF---EEFEGKVKIDGELLTAENVWNLRRKI 83 (277)
T ss_pred EEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC---CCCCCEEEECCEECCcCCHHHHhcce
Confidence 34444444321 2469999999998 99999999999999999999999 99999999998654 23567889
Q ss_pred EEEcCCCC-CCccccccccchHHHHhcccc----c---hHHHHHHHH-HhcCCccccCCCcCCch-HHHHHHHHH-----
Q 001709 772 CYCDSAGV-NLQELTMEAARFKDEMWMGIR----D---LSRKTDLIV-LVHNLSHKIPRYNYSSA-SGQQQPALS----- 836 (1022)
Q Consensus 772 GyV~Q~~~-~~~~lTV~~~~~~ENI~~g~~----~---~~~~v~~~L-~v~gL~~~~~r~~~~LS-GqrQRvaIA----- 836 (1022)
||++|++. .++..|| .|||.++.. . ..++++.++ .+ ||.++.++++.+|| |||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv-----~eni~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~LS~G~~qrv~lAraL~~ 157 (277)
T PRK13642 84 GMVFQNPDNQFVGATV-----EDDVAFGMENQGIPREEMIKRVDEALLAV-NMLDFKTREPARLSGGQKQRVAVAGIIAL 157 (277)
T ss_pred EEEEECHHHhhccCCH-----HHHHHhhHHHcCCCHHHHHHHHHHHHHHC-CCHhHhhCCcccCCHHHHHHHHHHHHHHc
Confidence 99999543 3667899 999987543 1 234567788 77 99999999999999 999999999
Q ss_pred ----hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCCcccccCccccccc
Q 001709 837 ----LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCPYVMPGAVSASLSW 902 (1022)
Q Consensus 837 ----LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~~V~~~~~~a~~l~ 902 (1022)
|||||||++ +|...+..+...+.+..++...++++++|....+..++.++.+.
T Consensus 158 ~p~llllDEPt~~-------------LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~ 214 (277)
T PRK13642 158 RPEIIILDESTSM-------------LDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMK 214 (277)
T ss_pred CCCEEEEeCCccc-------------CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEE
Confidence 999999997 77788888777665544433456666653333333344444443
No 155
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.93 E-value=1.6e-25 Score=232.78 Aligned_cols=165 Identities=13% Similarity=0.101 Sum_probs=129.0
Q ss_pred cccccCceeEEEEecCCCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc-hhhhcC
Q 001709 694 FIRPEGLSDVFIFCTSDFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD-QEGIAG 769 (1022)
Q Consensus 694 ~i~~~~l~~~~~~~~~~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~-~~~lr~ 769 (1022)
.+.+++++. .+ +.+++++++||+++ +++|+|+||||||||+|+|+|++ +|++|+|.+++.++ ....++
T Consensus 11 ~l~~~~l~~---~~--~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~---~~~~G~i~~~g~~i~~~~~~~ 82 (214)
T PRK13543 11 LLAAHALAF---SR--NEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLL---HVESGQIQIDGKTATRGDRSR 82 (214)
T ss_pred eEEEeeEEE---ec--CCceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCC---CCCCeeEEECCEEccchhhhh
Confidence 355555553 22 34579999999999 99999999999999999999999 99999999998765 333456
Q ss_pred ceEEEcCCCCCCccccccccchHHHHhcccc----chHHHHHHHH-HhcCCccccCCCcCCch-HHHHHHHHH-------
Q 001709 770 GLCYCDSAGVNLQELTMEAARFKDEMWMGIR----DLSRKTDLIV-LVHNLSHKIPRYNYSSA-SGQQQPALS------- 836 (1022)
Q Consensus 770 ~IGyV~Q~~~~~~~lTV~~~~~~ENI~~g~~----~~~~~v~~~L-~v~gL~~~~~r~~~~LS-GqrQRvaIA------- 836 (1022)
.++|++|++..++.+|+ +||+.++.. ...+.+.+++ .+ +|.+..++++.+|| |||||++||
T Consensus 83 ~i~~~~q~~~~~~~~t~-----~e~l~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~LS~G~~qrv~laral~~~p 156 (214)
T PRK13543 83 FMAYLGHLPGLKADLST-----LENLHFLCGLHGRRAKQMPGSALAIV-GLAGYEDTLVRQLSAGQKKRLALARLWLSPA 156 (214)
T ss_pred ceEEeecCcccccCCcH-----HHHHHHHHHhcCCcHHHHHHHHHHHc-CChhhccCChhhCCHHHHHHHHHHHHHhcCC
Confidence 79999995444777899 999976432 1345667788 77 99988999999999 999999999
Q ss_pred --hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEe
Q 001709 837 --LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVIN 886 (1022)
Q Consensus 837 --LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~ 886 (1022)
|||||||++ +|...+..+...+.+. .....++++++
T Consensus 157 ~llllDEPt~~-------------LD~~~~~~l~~~l~~~-~~~~~tiii~s 194 (214)
T PRK13543 157 PLWLLDEPYAN-------------LDLEGITLVNRMISAH-LRGGGAALVTT 194 (214)
T ss_pred CEEEEeCCccc-------------CCHHHHHHHHHHHHHH-HhCCCEEEEEe
Confidence 999999996 6777777666555443 44445666665
No 156
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.93 E-value=8.8e-26 Score=235.47 Aligned_cols=154 Identities=15% Similarity=0.157 Sum_probs=119.8
Q ss_pred CeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCC--CCCCCceEEEEccccc-h-----hhhcCceEEEcCCCC
Q 001709 711 FTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGK--LVRTINSGNLDAEADD-Q-----EGIAGGLCYCDSAGV 779 (1022)
Q Consensus 711 ~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~--~~~PtsG~I~idg~~~-~-----~~lr~~IGyV~Q~~~ 779 (1022)
.+++|+|+||+|+ +++|+||||||||||+|+|+|++. -.+|++|+|.++|.++ . ...++.|+|+||+..
T Consensus 12 ~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~ 91 (227)
T cd03260 12 DKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPN 91 (227)
T ss_pred CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHHHhhEEEEecCch
Confidence 4579999999998 999999999999999999999860 0037899999998664 1 234678999999543
Q ss_pred CCccccccccchHHHHhcccc-----c---hHHHHHHHH-HhcCCccccCCC--cCCch-HHHHHHHHH---------hh
Q 001709 780 NLQELTMEAARFKDEMWMGIR-----D---LSRKTDLIV-LVHNLSHKIPRY--NYSSA-SGQQQPALS---------LL 838 (1022)
Q Consensus 780 ~~~~lTV~~~~~~ENI~~g~~-----~---~~~~v~~~L-~v~gL~~~~~r~--~~~LS-GqrQRvaIA---------LL 838 (1022)
.+ .+|| +||+.++.. . ..+++.+++ .+ ||.+..++. +.+|| |||||++|| ||
T Consensus 92 ~~-~~tv-----~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lll 164 (227)
T cd03260 92 PF-PGSI-----YDNVAYGLRLHGIKLKEELDERVEEALRKA-ALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLL 164 (227)
T ss_pred hc-cccH-----HHHHHhHHHhcCCCcHHHHHHHHHHHHHHc-CCChHHhccCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 36 7999 999987532 1 235677788 77 998877777 59999 999999999 99
Q ss_pred hccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEe
Q 001709 839 LNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVIN 886 (1022)
Q Consensus 839 LDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~ 886 (1022)
|||||++ +|...+..+...+.+. ... .++++++
T Consensus 165 lDEPt~~-------------LD~~~~~~l~~~l~~~-~~~-~tii~~s 197 (227)
T cd03260 165 LDEPTSA-------------LDPISTAKIEELIAEL-KKE-YTIVIVT 197 (227)
T ss_pred EeCCCcc-------------CCHHHHHHHHHHHHHH-hhC-cEEEEEe
Confidence 9999997 7777777776666444 333 4555555
No 157
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.93 E-value=8.8e-27 Score=246.44 Aligned_cols=187 Identities=18% Similarity=0.186 Sum_probs=145.8
Q ss_pred ccccCceeEEEEecCCCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccchhhhcCce
Q 001709 695 IRPEGLSDVFIFCTSDFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADDQEGIAGGL 771 (1022)
Q Consensus 695 i~~~~l~~~~~~~~~~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~~~~lr~~I 771 (1022)
+.++++++.| +.+.|++||||+|+ ++||+|||||||||++|+|+|++ .|++|+|.++|.++....+.+|
T Consensus 3 L~ie~vtK~F-----g~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILgll---e~~~G~I~~~g~~~~~~~~~rI 74 (300)
T COG4152 3 LEIEGVTKSF-----GDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLL---EPTEGEITWNGGPLSQEIKNRI 74 (300)
T ss_pred eEEecchhcc-----CceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccC---CccCceEEEcCcchhhhhhhhc
Confidence 4456666633 67899999999999 99999999999999999999999 9999999999988755667889
Q ss_pred EEEcCCCCCCccccccccchHHHHhcccc-------chHHHHHHHH-HhcCCccccCCCcCCch-HHHHHHHHH------
Q 001709 772 CYCDSAGVNLQELTMEAARFKDEMWMGIR-------DLSRKTDLIV-LVHNLSHKIPRYNYSSA-SGQQQPALS------ 836 (1022)
Q Consensus 772 GyV~Q~~~~~~~lTV~~~~~~ENI~~g~~-------~~~~~v~~~L-~v~gL~~~~~r~~~~LS-GqrQRvaIA------ 836 (1022)
||+|..-.+++.+|| .|-|.|.++ +.+++++.+| .+ ++.....+++.+|| |+||++.+-
T Consensus 75 GyLPEERGLy~k~tv-----~dql~yla~LkGm~~~e~~~~~~~wLer~-~i~~~~~~kIk~LSKGnqQKIQfisaviHe 148 (300)
T COG4152 75 GYLPEERGLYPKMTV-----EDQLKYLAELKGMPKAEIQKKLQAWLERL-EIVGKKTKKIKELSKGNQQKIQFISAVIHE 148 (300)
T ss_pred ccChhhhccCccCcH-----HHHHHHHHHhcCCcHHHHHHHHHHHHHhc-cccccccchHHHhhhhhhHHHHHHHHHhcC
Confidence 999995555999999 999988655 2567788999 88 99999999999999 999999877
Q ss_pred ---hhhccccCCChhHHHHHhhhhcccHHHHHHH---HHHHHHHHHhCCCeEEEEecCCcccccC
Q 001709 837 ---LLLNEAKSLGIPWVLAITNKFSVSAHQQRAA---IDAVMQAYQASPSTTEVINSCPYVMPGA 895 (1022)
Q Consensus 837 ---LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~---i~~ll~~~~~t~~~~vVv~~~~~V~~~~ 895 (1022)
+|||||||+.+|.=.++++..-.+..++... ..+.|+...+-||.+++++.+..|.++.
T Consensus 149 PeLlILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~llmL~kG~~V~~G~ 213 (300)
T COG4152 149 PELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGT 213 (300)
T ss_pred CCEEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhhheecCCceEEecc
Confidence 9999999986664444443322222222211 1455555566667777777666666553
No 158
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.93 E-value=1.6e-25 Score=238.38 Aligned_cols=154 Identities=20% Similarity=0.180 Sum_probs=124.1
Q ss_pred CCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc----hhhhcCceEEEcCCCCCCc
Q 001709 710 DFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD----QEGIAGGLCYCDSAGVNLQ 782 (1022)
Q Consensus 710 ~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~----~~~lr~~IGyV~Q~~~~~~ 782 (1022)
++.++|+||||+++ +++|+||||||||||+|+|+|++ +|++|+|.+++.++ ...+++.|+|++|+...++
T Consensus 12 ~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~---~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~ 88 (256)
T TIGR03873 12 GGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGAL---RPDAGTVDLAGVDLHGLSRRARARRVALVEQDSDTAV 88 (256)
T ss_pred CCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCC---CCCCCEEEECCEEcccCCHHHHhhheEEecccCccCC
Confidence 35689999999998 99999999999999999999999 99999999998654 2345668999999544467
Q ss_pred cccccccchHHHHhcccc-----------chHHHHHHHH-HhcCCccccCCCcCCch-HHHHHHHHH---------hhhc
Q 001709 783 ELTMEAARFKDEMWMGIR-----------DLSRKTDLIV-LVHNLSHKIPRYNYSSA-SGQQQPALS---------LLLN 840 (1022)
Q Consensus 783 ~lTV~~~~~~ENI~~g~~-----------~~~~~v~~~L-~v~gL~~~~~r~~~~LS-GqrQRvaIA---------LLLD 840 (1022)
.+|| .||+.++.. ...+++.+++ .+ ++.+..++++.+|| |||||++|| ||||
T Consensus 89 ~~tv-----~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllD 162 (256)
T TIGR03873 89 PLTV-----RDVVALGRIPHRSLWAGDSPHDAAVVDRALART-ELSHLADRDMSTLSGGERQRVHVARALAQEPKLLLLD 162 (256)
T ss_pred CCCH-----HHHHHhcchhhhhhccCCCHHHHHHHHHHHHHc-CcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 7899 999987521 1234577788 77 99989999999999 999999999 9999
Q ss_pred cccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEe
Q 001709 841 EAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVIN 886 (1022)
Q Consensus 841 EPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~ 886 (1022)
|||++ +|...+..+...+.+. .....++++++
T Consensus 163 EPt~~-------------LD~~~~~~l~~~l~~~-~~~~~tiii~s 194 (256)
T TIGR03873 163 EPTNH-------------LDVRAQLETLALVREL-AATGVTVVAAL 194 (256)
T ss_pred Ccccc-------------CCHHHHHHHHHHHHHH-HhcCCEEEEEe
Confidence 99997 7777777766666543 33344556665
No 159
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.93 E-value=6.1e-26 Score=266.60 Aligned_cols=208 Identities=18% Similarity=0.185 Sum_probs=147.4
Q ss_pred cccccccCCCcchhhcccCCCCCCCCCCcccccCceeEEEEecCCCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHH
Q 001709 666 SISVFPSIDSETIDCCMEHGSGSADDEKFIRPEGLSDVFIFCTSDFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAI 742 (1022)
Q Consensus 666 ~~~vf~~ld~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL 742 (1022)
++++++.+|.++... +...........|+ ++++.+.|. +++++|+||||+++ ++||+||||||||||+++|
T Consensus 302 ~~ri~~~l~~~~~~~--~~~~~~~~~~~~I~---f~~vsf~y~-~~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL 375 (567)
T COG1132 302 AERLFELLDEEPEVE--DPPDPLKDTIGSIE---FENVSFSYP-GKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLL 375 (567)
T ss_pred HHHHHHHHcCCcccc--CCCCCCCCCCCeEE---EEEEEEEcC-CCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHH
Confidence 678888877644111 11100111222244 666665553 35789999999998 9999999999999999999
Q ss_pred HcCCCCCCCCceEEEEccccc----hhhhcCceEEEcCCCCCCccccccccchHHHHhccccc-hHHHHHHHH-------
Q 001709 743 LGQGKLVRTINSGNLDAEADD----QEGIAGGLCYCDSAGVNLQELTMEAARFKDEMWMGIRD-LSRKTDLIV------- 810 (1022)
Q Consensus 743 ~GL~~~~~PtsG~I~idg~~~----~~~lr~~IGyV~Q~~~~~~~lTV~~~~~~ENI~~g~~~-~~~~v~~~L------- 810 (1022)
+|++ +|++|+|.+||.++ ...+|+.|+||+| ++.++..|| +|||.+|..+ .++.+.+++
T Consensus 376 ~r~~---~~~~G~I~idg~dI~~i~~~~lr~~I~~V~Q-d~~LF~~TI-----~~NI~~g~~~at~eei~~a~k~a~~~d 446 (567)
T COG1132 376 LRLY---DPTSGEILIDGIDIRDISLDSLRKRIGIVSQ-DPLLFSGTI-----RENIALGRPDATDEEIEEALKLANAHE 446 (567)
T ss_pred hccC---CCCCCeEEECCEehhhcCHHHHHHhccEEcc-cceeecccH-----HHHHhcCCCCCCHHHHHHHHHHhChHH
Confidence 9999 99999999997654 7789999999999 566445999 9999999763 223333333
Q ss_pred ----HhcCCccccCCCcCCch-HHHHHHHHH---------hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHH
Q 001709 811 ----LVHNLSHKIPRYNYSSA-SGQQQPALS---------LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQ 876 (1022)
Q Consensus 811 ----~v~gL~~~~~r~~~~LS-GqrQRvaIA---------LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~ 876 (1022)
...|++...++.+..|| |||||++|| ||||||||+ +|..+...+.+.+.+..
T Consensus 447 ~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~~ILILDEaTSa-------------lD~~tE~~I~~~l~~l~- 512 (567)
T COG1132 447 FIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILILDEATSA-------------LDTETEALIQDALKKLL- 512 (567)
T ss_pred HHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeccccc-------------cCHHhHHHHHHHHHHHh-
Confidence 23356677778888999 999999999 999999997 77777676666664332
Q ss_pred hCCCeEEEEecCCcccccCcccccccC
Q 001709 877 ASPSTTEVINSCPYVMPGAVSASLSWG 903 (1022)
Q Consensus 877 ~t~~~~vVv~~~~~V~~~~~~a~~l~~ 903 (1022)
+ ..|+++|.|-...+..+|..+.+.+
T Consensus 513 ~-~rT~iiIaHRlsti~~aD~IiVl~~ 538 (567)
T COG1132 513 K-GRTTLIIAHRLSTIKNADRIIVLDN 538 (567)
T ss_pred c-CCEEEEEeccHhHHHhCCEEEEEEC
Confidence 2 2367777544333334555555544
No 160
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=1.3e-25 Score=236.50 Aligned_cols=154 Identities=14% Similarity=0.142 Sum_probs=123.3
Q ss_pred CeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc----------hhhhcCceEEEcCC
Q 001709 711 FTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD----------QEGIAGGLCYCDSA 777 (1022)
Q Consensus 711 ~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~----------~~~lr~~IGyV~Q~ 777 (1022)
.+.+|+++||+++ +++|+||||||||||+|+|+|++ +|++|+|.++|.++ ....+++|+|++|+
T Consensus 14 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~---~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~ 90 (242)
T PRK11124 14 AHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLE---MPRSGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQ 90 (242)
T ss_pred CeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCC---CCCceEEEECCEecccccccchhhHHHHHhheEEEecC
Confidence 4679999999998 99999999999999999999999 99999999998643 12346789999995
Q ss_pred CCCCccccccccchHHHHhccc------c--chHHHHHHHH-HhcCCccccCCCcCCch-HHHHHHHHH---------hh
Q 001709 778 GVNLQELTMEAARFKDEMWMGI------R--DLSRKTDLIV-LVHNLSHKIPRYNYSSA-SGQQQPALS---------LL 838 (1022)
Q Consensus 778 ~~~~~~lTV~~~~~~ENI~~g~------~--~~~~~v~~~L-~v~gL~~~~~r~~~~LS-GqrQRvaIA---------LL 838 (1022)
...++.+|+ .||+.++. . ...+++.+++ .+ ||.+..++++.+|| |||||++|| ||
T Consensus 91 ~~~~~~~tv-----~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~-gl~~~~~~~~~~LS~G~~qrv~laral~~~p~lli 164 (242)
T PRK11124 91 YNLWPHLTV-----QQNLIEAPCRVLGLSKDQALARAEKLLERL-RLKPYADRFPLHLSGGQQQRVAIARALMMEPQVLL 164 (242)
T ss_pred ccccCCCcH-----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHc-CChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 444778999 99997421 1 1234577778 77 99989999999999 999999999 99
Q ss_pred hccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEec
Q 001709 839 LNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINS 887 (1022)
Q Consensus 839 LDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~ 887 (1022)
|||||++ +|...+..+...+.+ +.....++++++|
T Consensus 165 lDEPt~~-------------LD~~~~~~l~~~l~~-~~~~~~tii~~sh 199 (242)
T PRK11124 165 FDEPTAA-------------LDPEITAQIVSIIRE-LAETGITQVIVTH 199 (242)
T ss_pred EcCCCCc-------------CCHHHHHHHHHHHHH-HHHcCCEEEEEeC
Confidence 9999997 777777776665543 4444456666653
No 161
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.93 E-value=1.2e-25 Score=237.76 Aligned_cols=151 Identities=15% Similarity=0.197 Sum_probs=121.6
Q ss_pred CeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCC-----ceEEEEccccc------hhhhcCceEEEcC
Q 001709 711 FTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTI-----NSGNLDAEADD------QEGIAGGLCYCDS 776 (1022)
Q Consensus 711 ~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~Pt-----sG~I~idg~~~------~~~lr~~IGyV~Q 776 (1022)
...+|+||||+|+ +++|+|+||||||||+|+|+|++ +|+ +|+|.++|.++ ....++.|+|+||
T Consensus 13 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~---~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q 89 (247)
T TIGR00972 13 EKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMN---DLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQ 89 (247)
T ss_pred CeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccC---CCCcCCCCceEEEECCEEccccccchHHHHhheEEEec
Confidence 4579999999998 99999999999999999999999 998 99999998654 1234678999999
Q ss_pred CCCCCccccccccchHHHHhcccc-----c---hHHHHHHHH-HhcCCc----cccCCCcCCch-HHHHHHHHH------
Q 001709 777 AGVNLQELTMEAARFKDEMWMGIR-----D---LSRKTDLIV-LVHNLS----HKIPRYNYSSA-SGQQQPALS------ 836 (1022)
Q Consensus 777 ~~~~~~~lTV~~~~~~ENI~~g~~-----~---~~~~v~~~L-~v~gL~----~~~~r~~~~LS-GqrQRvaIA------ 836 (1022)
+...++ +|+ +||+.++.. . ..+++..++ .+ ||. +..++++.+|| |||||++||
T Consensus 90 ~~~~~~-~tv-----~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~ 162 (247)
T TIGR00972 90 KPNPFP-MSI-----YDNIAYGPRLHGIKDKKELDEIVEESLKKA-ALWDEVKDRLHDSALGLSGGQQQRLCIARALAVE 162 (247)
T ss_pred CcccCC-CCH-----HHHHHhHHHhcCCCCHHHHHHHHHHHHHHc-CCCcchhhHhhCCcccCCHHHHHHHHHHHHHhcC
Confidence 544466 999 999987532 1 234567778 77 997 77899999999 999999999
Q ss_pred ---hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEe
Q 001709 837 ---LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVIN 886 (1022)
Q Consensus 837 ---LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~ 886 (1022)
|||||||++ +|...+..+...+.+. ... .++++++
T Consensus 163 p~llllDEPt~~-------------LD~~~~~~l~~~l~~~-~~~-~tiiivs 200 (247)
T TIGR00972 163 PEVLLLDEPTSA-------------LDPIATGKIEELIQEL-KKK-YTIVIVT 200 (247)
T ss_pred CCEEEEeCCccc-------------CCHHHHHHHHHHHHHH-Hhc-CeEEEEe
Confidence 999999997 7777777776666543 332 4666665
No 162
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.93 E-value=7.8e-26 Score=263.20 Aligned_cols=173 Identities=17% Similarity=0.175 Sum_probs=132.2
Q ss_pred ceeEEEEecCCCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc----hhhhcCceE
Q 001709 700 LSDVFIFCTSDFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD----QEGIAGGLC 772 (1022)
Q Consensus 700 l~~~~~~~~~~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~----~~~lr~~IG 772 (1022)
++++.+.|..+.+++|+|+||+++ +++|+||||||||||+|+|+|++ +|++|+|.+|+.++ ..++|+.||
T Consensus 323 ~~~v~f~y~~~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~---~~~~G~I~~~g~~i~~~~~~~lr~~i~ 399 (529)
T TIGR02857 323 FSGLSVAYPGRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFV---DPTEGSIAVNGVPLADADADSWRDQIA 399 (529)
T ss_pred EEEEEEECCCCCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCC---CCCCcEEEECCEehhhCCHHHHHhheE
Confidence 566666664434579999999999 99999999999999999999999 99999999998664 567899999
Q ss_pred EEcCCCCCCccccccccchHHHHhccccc-hHHHHHHHH-HhcCC-----------ccccCCCcCCch-HHHHHHHHH--
Q 001709 773 YCDSAGVNLQELTMEAARFKDEMWMGIRD-LSRKTDLIV-LVHNL-----------SHKIPRYNYSSA-SGQQQPALS-- 836 (1022)
Q Consensus 773 yV~Q~~~~~~~lTV~~~~~~ENI~~g~~~-~~~~v~~~L-~v~gL-----------~~~~~r~~~~LS-GqrQRvaIA-- 836 (1022)
||+| ++.++..|+ +|||.++..+ .++.+.+++ .+ ++ +...++...+|| |||||++||
T Consensus 400 ~v~Q-~~~lf~~ti-----~~Ni~~~~~~~~~~~i~~a~~~~-~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRa 472 (529)
T TIGR02857 400 WVPQ-HPFLFAGTI-----AENIRLARPDASDAEIRRALERA-GLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARA 472 (529)
T ss_pred EEcC-CCcccCcCH-----HHHHhccCCCCCHHHHHHHHHHc-CcHHHHHhCcccccchhccccccCCHHHHHHHHHHHH
Confidence 9999 555445899 9999997653 345555555 44 44 444556677899 999999999
Q ss_pred -------hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCCcccccCcc
Q 001709 837 -------LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCPYVMPGAVS 897 (1022)
Q Consensus 837 -------LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~~V~~~~~~ 897 (1022)
||||||||+ +|.++...+...+.+. . ...|++++.|-...+..+|.
T Consensus 473 l~~~~~ililDE~ts~-------------lD~~~~~~i~~~l~~~-~-~~~t~i~itH~~~~~~~~d~ 525 (529)
T TIGR02857 473 FLRDAPLLLLDEPTAH-------------LDAETEALVTEALRAL-A-QGRTVLLVTHRLALAERADR 525 (529)
T ss_pred HhcCCCEEEEeCcccc-------------cCHHHHHHHHHHHHHh-c-CCCEEEEEecCHHHHHhCCE
Confidence 999999997 7877777776666443 2 23467777655444444443
No 163
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.93 E-value=6.3e-26 Score=265.53 Aligned_cols=180 Identities=17% Similarity=0.130 Sum_probs=141.0
Q ss_pred ceeEEEEecCCCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc----hhhhcCceE
Q 001709 700 LSDVFIFCTSDFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD----QEGIAGGLC 772 (1022)
Q Consensus 700 l~~~~~~~~~~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~----~~~lr~~IG 772 (1022)
++++.+.|..+..++|+|+||+++ +++|+|+||||||||+|+|+|++ +|++|+|++|+.++ ..++++.|+
T Consensus 333 ~~~v~f~y~~~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~---~~~~G~I~i~g~~i~~~~~~~~~~~i~ 409 (571)
T TIGR02203 333 FRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFY---EPDSGQILLDGHDLADYTLASLRRQVA 409 (571)
T ss_pred EEEEEEEcCCCCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhcc---CCCCCeEEECCEeHHhcCHHHHHhhce
Confidence 666666665445679999999998 99999999999999999999999 99999999998664 567889999
Q ss_pred EEcCCCCCCccccccccchHHHHhcccc-c-hHHHHHHHH-Hh----------cCCccccCCCcCCch-HHHHHHHHH--
Q 001709 773 YCDSAGVNLQELTMEAARFKDEMWMGIR-D-LSRKTDLIV-LV----------HNLSHKIPRYNYSSA-SGQQQPALS-- 836 (1022)
Q Consensus 773 yV~Q~~~~~~~lTV~~~~~~ENI~~g~~-~-~~~~v~~~L-~v----------~gL~~~~~r~~~~LS-GqrQRvaIA-- 836 (1022)
||+| ++.++..|+ +|||.++.. + .++++.+++ .+ .||+...+.....|| |||||++||
T Consensus 410 ~v~Q-~~~lf~~Ti-----~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARa 483 (571)
T TIGR02203 410 LVSQ-DVVLFNDTI-----ANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARA 483 (571)
T ss_pred EEcc-CcccccccH-----HHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHH
Confidence 9999 566666899 999999863 2 455555655 44 233444555567899 999999999
Q ss_pred -------hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCCcccccCcccccccC
Q 001709 837 -------LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCPYVMPGAVSASLSWG 903 (1022)
Q Consensus 837 -------LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~~V~~~~~~a~~l~~ 903 (1022)
||||||||+ +|.++.+.+...+.+ +. ...++++++|.....+.+|+.+.+.+
T Consensus 484 ll~~~~illLDEpts~-------------LD~~~~~~i~~~L~~-~~-~~~tiIiitH~~~~~~~~D~ii~l~~ 542 (571)
T TIGR02203 484 LLKDAPILILDEATSA-------------LDNESERLVQAALER-LM-QGRTTLVIAHRLSTIEKADRIVVMDD 542 (571)
T ss_pred HhcCCCEEEEeCcccc-------------CCHHHHHHHHHHHHH-Hh-CCCEEEEEehhhHHHHhCCEEEEEeC
Confidence 999999997 788887777665543 32 23688888888877777777776643
No 164
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=1.4e-25 Score=248.63 Aligned_cols=172 Identities=11% Similarity=0.076 Sum_probs=127.0
Q ss_pred eeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCC----CCceEEEEccccc----hhhh----cCceEEEcC
Q 001709 712 TTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVR----TINSGNLDAEADD----QEGI----AGGLCYCDS 776 (1022)
Q Consensus 712 ~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~----PtsG~I~idg~~~----~~~l----r~~IGyV~Q 776 (1022)
.++|+||||+|+ +++|+|+||||||||+++|+|++ + |++|+|.++|.++ .... ++.|+||||
T Consensus 20 ~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll---~~~~~~~~G~i~~~G~~i~~~~~~~~~~~r~~~i~~v~Q 96 (326)
T PRK11022 20 FRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLI---DYPGRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQ 96 (326)
T ss_pred EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCC---CCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEec
Confidence 579999999999 99999999999999999999999 7 4899999998764 1222 247999999
Q ss_pred CCC--CCccccccccchHHHHhcc--cc--chHHHHHHHH-HhcCCcc---ccCCCcCCch-HHHHHHHHH---------
Q 001709 777 AGV--NLQELTMEAARFKDEMWMG--IR--DLSRKTDLIV-LVHNLSH---KIPRYNYSSA-SGQQQPALS--------- 836 (1022)
Q Consensus 777 ~~~--~~~~lTV~~~~~~ENI~~g--~~--~~~~~v~~~L-~v~gL~~---~~~r~~~~LS-GqrQRvaIA--------- 836 (1022)
+.. +.+.+|+ .+++.+++... .. ...+++.+++ .+ ||.+ ..++++++|| ||||||+||
T Consensus 97 ~~~~~l~p~~~v-~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~-gL~~~~~~l~~~p~~LSgGq~QRv~iArAL~~~P~l 174 (326)
T PRK11022 97 DPMTSLNPCYTV-GFQIMEAIKVHQGGNKKTRRQRAIDLLNQV-GIPDPASRLDVYPHQLSGGMSQRVMIAMAIACRPKL 174 (326)
T ss_pred CchhhcCCcCCH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHC-CCCChHHHHhCCchhCCHHHHHHHHHHHHHHhCCCE
Confidence 653 2677888 12233343321 11 1345688888 88 9964 5789999999 999999999
Q ss_pred hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCCcccccCcccccccCCCCC
Q 001709 837 LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCPYVMPGAVSASLSWGASGG 907 (1022)
Q Consensus 837 LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~~V~~~~~~a~~l~~~~~~ 907 (1022)
|||||||++ +|...+..++..+.+..++...++++++ |+...+..+++++.+
T Consensus 175 lilDEPts~-------------LD~~~~~~il~lL~~l~~~~g~til~iT------Hdl~~~~~~adri~v 226 (326)
T PRK11022 175 LIADEPTTA-------------LDVTIQAQIIELLLELQQKENMALVLIT------HDLALVAEAAHKIIV 226 (326)
T ss_pred EEEeCCCCC-------------CCHHHHHHHHHHHHHHHHhcCCEEEEEe------CCHHHHHHhCCEEEE
Confidence 999999997 7777788777766555444444666665 555554455555544
No 165
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.93 E-value=6.6e-26 Score=257.77 Aligned_cols=179 Identities=15% Similarity=0.183 Sum_probs=141.4
Q ss_pred cccccCceeEEEEecCCCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc-----hh
Q 001709 694 FIRPEGLSDVFIFCTSDFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD-----QE 765 (1022)
Q Consensus 694 ~i~~~~l~~~~~~~~~~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~-----~~ 765 (1022)
.+..++++++| ++..|+++|||+|+ +.||+|.||||||||+++|.|+| +||+|+|+++|+.+ ..
T Consensus 4 ~l~~~~itK~f-----~~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~---~P~~GeI~v~G~~v~~~sP~d 75 (501)
T COG3845 4 ALEMRGITKRF-----PGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLY---QPDSGEIRVDGKEVRIKSPRD 75 (501)
T ss_pred eEEEeccEEEc-----CCEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcc---cCCcceEEECCEEeccCCHHH
Confidence 46667777755 47889999999999 99999999999999999999999 99999999998764 34
Q ss_pred hhcCceEEEcCCCCCCccccccccchHHHHhccccc----------hHHHHHHHH-HhcCCccccCCCcCCch-HHHHHH
Q 001709 766 GIAGGLCYCDSAGVNLQELTMEAARFKDEMWMGIRD----------LSRKTDLIV-LVHNLSHKIPRYNYSSA-SGQQQP 833 (1022)
Q Consensus 766 ~lr~~IGyV~Q~~~~~~~lTV~~~~~~ENI~~g~~~----------~~~~v~~~L-~v~gL~~~~~r~~~~LS-GqrQRv 833 (1022)
.++.+||||+|+..+++.+|| .|||.+|... .+++++++. .. ||.=-.++++.+|| |+||||
T Consensus 76 A~~~GIGMVhQHF~Lv~~lTV-----~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~y-Gl~vdp~~~V~dLsVG~qQRV 149 (501)
T COG3845 76 AIRLGIGMVHQHFMLVPTLTV-----AENIILGLEPSKGGLIDRRQARARIKELSERY-GLPVDPDAKVADLSVGEQQRV 149 (501)
T ss_pred HHHcCCcEEeeccccccccch-----hhhhhhcCccccccccCHHHHHHHHHHHHHHh-CCCCCccceeecCCcchhHHH
Confidence 568899999995555899999 9999998852 456788888 77 99888899999999 999999
Q ss_pred HHH---------hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCCcccccCcccccccCC
Q 001709 834 ALS---------LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCPYVMPGAVSASLSWGA 904 (1022)
Q Consensus 834 aIA---------LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~~V~~~~~~a~~l~~~ 904 (1022)
.|- ||||||||- |.+.+-+.+.. +++.+.+...++++|+ |-.+|+.-++||
T Consensus 150 EIlKaLyr~a~iLILDEPTaV-------------LTP~E~~~lf~-~l~~l~~~G~tIi~IT------HKL~Ev~~iaDr 209 (501)
T COG3845 150 EILKALYRGARLLILDEPTAV-------------LTPQEADELFE-ILRRLAAEGKTIIFIT------HKLKEVMAIADR 209 (501)
T ss_pred HHHHHHhcCCCEEEEcCCccc-------------CCHHHHHHHHH-HHHHHHHCCCEEEEEe------ccHHHHHHhhCe
Confidence 998 999999995 33444444433 3345566666666664 455555555554
Q ss_pred CC
Q 001709 905 SG 906 (1022)
Q Consensus 905 ~~ 906 (1022)
+.
T Consensus 210 vT 211 (501)
T COG3845 210 VT 211 (501)
T ss_pred eE
Confidence 43
No 166
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.93 E-value=1.2e-25 Score=237.02 Aligned_cols=172 Identities=13% Similarity=0.103 Sum_probs=130.5
Q ss_pred cCCCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc---hhhhcCceEEEcCCCC-C
Q 001709 708 TSDFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD---QEGIAGGLCYCDSAGV-N 780 (1022)
Q Consensus 708 ~~~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~---~~~lr~~IGyV~Q~~~-~ 780 (1022)
.++.+++|+||||+|+ +++|+||||||||||+|+|+|++ +|++|+|.+++.+. ....++.++|++|+.. .
T Consensus 30 ~~~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~---~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 106 (236)
T cd03267 30 KYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLL---QPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQL 106 (236)
T ss_pred ccCCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCc---CCCceEEEECCEEccccchhhcccEEEEcCCcccc
Confidence 3455789999999999 99999999999999999999999 99999999998653 2345678999985343 3
Q ss_pred CccccccccchHHHHhcccc-----c--hHHHHHHHH-HhcCCccccCCCcCCch-HHHHHHHHH---------hhhccc
Q 001709 781 LQELTMEAARFKDEMWMGIR-----D--LSRKTDLIV-LVHNLSHKIPRYNYSSA-SGQQQPALS---------LLLNEA 842 (1022)
Q Consensus 781 ~~~lTV~~~~~~ENI~~g~~-----~--~~~~v~~~L-~v~gL~~~~~r~~~~LS-GqrQRvaIA---------LLLDEP 842 (1022)
++.+|+ +||+.+... . ..+++..++ .+ ||.+..++++.+|| |||||++|| ||||||
T Consensus 107 ~~~~tv-----~e~l~~~~~~~~~~~~~~~~~~~~~l~~~-gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP 180 (236)
T cd03267 107 WWDLPV-----IDSFYLLAAIYDLPPARFKKRLDELSELL-DLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEP 180 (236)
T ss_pred CCCCcH-----HHHHHHHHHHcCCCHHHHHHHHHHHHHHc-CChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 677999 999876432 1 234566777 77 99988999999999 999999999 999999
Q ss_pred cCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCCcc-cccCcccccc
Q 001709 843 KSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCPYV-MPGAVSASLS 901 (1022)
Q Consensus 843 TSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~~V-~~~~~~a~~l 901 (1022)
|++ +|...+..+...+.+..+....++++++|.... ...++..+.+
T Consensus 181 t~~-------------LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l 227 (236)
T cd03267 181 TIG-------------LDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVI 227 (236)
T ss_pred CCC-------------CCHHHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEE
Confidence 997 777777777766644333334466666544433 3334444444
No 167
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.93 E-value=1.9e-25 Score=234.60 Aligned_cols=155 Identities=14% Similarity=0.183 Sum_probs=120.5
Q ss_pred CeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcC--CCCCCCCceEEEEccccc----hhh-hcCceEEEcCCCCC
Q 001709 711 FTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQ--GKLVRTINSGNLDAEADD----QEG-IAGGLCYCDSAGVN 780 (1022)
Q Consensus 711 ~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL--~~~~~PtsG~I~idg~~~----~~~-lr~~IGyV~Q~~~~ 780 (1022)
+.++|+||||+|+ +++|+||||||||||+|+|+|+ + +|++|+|.+++.++ ... .+.+++||+|+...
T Consensus 12 ~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~---~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~ 88 (243)
T TIGR01978 12 DKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSY---EVTSGTILFKGQDLLELEPDERARAGLFLAFQYPEE 88 (243)
T ss_pred CEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCCcceEEECCEecCCCCHHHhhccceEeeeccccc
Confidence 4679999999999 9999999999999999999999 5 69999999998654 122 24569999995555
Q ss_pred CccccccccchHHHHhcccc-----------c---hHHHHHHHH-HhcCCc-cccCCCcC-Cch-HHHHHHHHH------
Q 001709 781 LQELTMEAARFKDEMWMGIR-----------D---LSRKTDLIV-LVHNLS-HKIPRYNY-SSA-SGQQQPALS------ 836 (1022)
Q Consensus 781 ~~~lTV~~~~~~ENI~~g~~-----------~---~~~~v~~~L-~v~gL~-~~~~r~~~-~LS-GqrQRvaIA------ 836 (1022)
++.+|+ .||+.+... . ..+++.+++ .+ ||. +..++.+. +|| |||||++||
T Consensus 89 ~~~~t~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~~~LS~G~~qrl~la~al~~~ 162 (243)
T TIGR01978 89 IPGVSN-----LEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALL-GMDEEFLNRSVNEGFSGGEKKRNEILQMALLE 162 (243)
T ss_pred cCCcCH-----HHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHc-CCchhhcccccccCcCHHHHHHHHHHHHHhcC
Confidence 888999 999876421 0 134567777 77 997 56788887 599 999999999
Q ss_pred ---hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecC
Q 001709 837 ---LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSC 888 (1022)
Q Consensus 837 ---LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~ 888 (1022)
|||||||++ +|...+..+...+.+ +.....++++++|.
T Consensus 163 p~llllDEPt~~-------------LD~~~~~~l~~~l~~-~~~~~~tvi~vsH~ 203 (243)
T TIGR01978 163 PKLAILDEIDSG-------------LDIDALKIVAEGINR-LREPDRSFLIITHY 203 (243)
T ss_pred CCEEEecCCccc-------------CCHHHHHHHHHHHHH-HHHCCcEEEEEEec
Confidence 999999997 777777777766644 44444466666543
No 168
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.93 E-value=1.5e-25 Score=235.21 Aligned_cols=177 Identities=16% Similarity=0.118 Sum_probs=125.5
Q ss_pred eeEEEEecCCCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc----hhhhcCceEE
Q 001709 701 SDVFIFCTSDFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD----QEGIAGGLCY 773 (1022)
Q Consensus 701 ~~~~~~~~~~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~----~~~lr~~IGy 773 (1022)
+++.+.+..+..++|+||||+++ +++|+||||||||||+++|+|++ +|++|+|+++|.++ ...+++.|+|
T Consensus 4 ~~l~~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~---~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (237)
T cd03252 4 EHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFY---VPENGRVLVDGHDLALADPAWLRRQVGV 80 (237)
T ss_pred EEEEEecCCCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCc---CCCCCEEEECCeehHhcCHHHHhhcEEE
Confidence 34444443334579999999998 99999999999999999999999 99999999998664 2345778999
Q ss_pred EcCCCCCCccccccccchHHHHhccccc-hHHHHHHHH-Hh----------cCCccccCCCcCCch-HHHHHHHHH----
Q 001709 774 CDSAGVNLQELTMEAARFKDEMWMGIRD-LSRKTDLIV-LV----------HNLSHKIPRYNYSSA-SGQQQPALS---- 836 (1022)
Q Consensus 774 V~Q~~~~~~~lTV~~~~~~ENI~~g~~~-~~~~v~~~L-~v----------~gL~~~~~r~~~~LS-GqrQRvaIA---- 836 (1022)
+||+ ..++..|| .||+.++... ....+...+ .. .++.+..++++.+|| |||||++||
T Consensus 81 ~~q~-~~~~~~tv-----~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~ 154 (237)
T cd03252 81 VLQE-NVLFNRSI-----RDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALI 154 (237)
T ss_pred EcCC-chhccchH-----HHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHh
Confidence 9995 44335799 9999886431 112222222 11 144555678899999 999999999
Q ss_pred -----hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCCcccccCcccccc
Q 001709 837 -----LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCPYVMPGAVSASLS 901 (1022)
Q Consensus 837 -----LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~~V~~~~~~a~~l 901 (1022)
|||||||++ +|...+..+...+.+. .. ..++++++|....+..++..+.+
T Consensus 155 ~~p~llllDEP~~~-------------LD~~~~~~l~~~l~~~-~~-~~tiii~sH~~~~~~~~d~v~~l 209 (237)
T cd03252 155 HNPRILIFDEATSA-------------LDYESEHAIMRNMHDI-CA-GRTVIIIAHRLSTVKNADRIIVM 209 (237)
T ss_pred hCCCEEEEeCCccc-------------CCHHHHHHHHHHHHHh-cC-CCEEEEEeCCHHHHHhCCEEEEE
Confidence 999999996 7777777777666543 33 34555555433333334444444
No 169
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=1.8e-25 Score=241.37 Aligned_cols=153 Identities=15% Similarity=0.197 Sum_probs=122.9
Q ss_pred eeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc----hhhhcCceEEEcCCCC-CCcc
Q 001709 712 TTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD----QEGIAGGLCYCDSAGV-NLQE 783 (1022)
Q Consensus 712 ~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~----~~~lr~~IGyV~Q~~~-~~~~ 783 (1022)
..+|+||||+|+ +++|+|+||||||||+|+|+|++ +|++|+|.++|.++ ...+++.+|||||+.. .++.
T Consensus 17 ~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~---~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 93 (277)
T PRK13652 17 KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGIL---KPTSGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIFS 93 (277)
T ss_pred CceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC---CCCceEEEECCEECCcCCHHHHHhheEEEecCccccccc
Confidence 469999999998 99999999999999999999999 99999999998654 2356678999999543 2556
Q ss_pred ccccccchHHHHhcccc----c---hHHHHHHHH-HhcCCccccCCCcCCch-HHHHHHHHH---------hhhccccCC
Q 001709 784 LTMEAARFKDEMWMGIR----D---LSRKTDLIV-LVHNLSHKIPRYNYSSA-SGQQQPALS---------LLLNEAKSL 845 (1022)
Q Consensus 784 lTV~~~~~~ENI~~g~~----~---~~~~v~~~L-~v~gL~~~~~r~~~~LS-GqrQRvaIA---------LLLDEPTSa 845 (1022)
.|| .||+.++.. . ..+++++++ .+ ||.+..++.+.+|| |||||++|| |||||||++
T Consensus 94 ~tv-----~~~l~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~LS~Gq~qrl~laraL~~~p~llilDEPt~g 167 (277)
T PRK13652 94 PTV-----EQDIAFGPINLGLDEETVAHRVSSALHML-GLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAG 167 (277)
T ss_pred ccH-----HHHHHhHHHHcCCCHHHHHHHHHHHHHHC-CChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccc
Confidence 899 999987543 1 234577888 77 99999999999999 999999999 999999997
Q ss_pred ChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEe
Q 001709 846 GIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVIN 886 (1022)
Q Consensus 846 d~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~ 886 (1022)
+|...+..+...+.+..+....++++++
T Consensus 168 -------------LD~~~~~~l~~~l~~l~~~~g~tvli~t 195 (277)
T PRK13652 168 -------------LDPQGVKELIDFLNDLPETYGMTVIFST 195 (277)
T ss_pred -------------CCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 6776777666655444333234555555
No 170
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.93 E-value=1.1e-25 Score=265.56 Aligned_cols=179 Identities=16% Similarity=0.132 Sum_probs=137.5
Q ss_pred ceeEEEEecCCCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc----hhhhcCceE
Q 001709 700 LSDVFIFCTSDFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD----QEGIAGGLC 772 (1022)
Q Consensus 700 l~~~~~~~~~~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~----~~~lr~~IG 772 (1022)
++++.+.|. +..++|+|+||+++ .++|+|+||||||||+|+|+|++ +|++|+|.+||.++ ...+++.|+
T Consensus 343 ~~~v~f~y~-~~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~---~p~~G~I~idg~~i~~~~~~~l~~~i~ 418 (592)
T PRK10790 343 IDNVSFAYR-DDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYY---PLTEGEIRLDGRPLSSLSHSVLRQGVA 418 (592)
T ss_pred EEEEEEEeC-CCCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhccc---CCCCceEEECCEEhhhCCHHHHHhheE
Confidence 566666554 34579999999998 99999999999999999999999 99999999998664 668899999
Q ss_pred EEcCCCCCCccccccccchHHHHhccccchHHHHHHHH-Hh----------cCCccccCCCcCCch-HHHHHHHHH----
Q 001709 773 YCDSAGVNLQELTMEAARFKDEMWMGIRDLSRKTDLIV-LV----------HNLSHKIPRYNYSSA-SGQQQPALS---- 836 (1022)
Q Consensus 773 yV~Q~~~~~~~lTV~~~~~~ENI~~g~~~~~~~v~~~L-~v----------~gL~~~~~r~~~~LS-GqrQRvaIA---- 836 (1022)
||+| ++.+++.|+ +|||.++....++++.+++ .+ .|++....+....|| |||||++||
T Consensus 419 ~v~Q-~~~lF~~Ti-----~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl 492 (592)
T PRK10790 419 MVQQ-DPVVLADTF-----LANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLV 492 (592)
T ss_pred EEcc-CCccccchH-----HHHHHhCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHH
Confidence 9999 555444799 9999998643445556665 44 133444556677899 999999999
Q ss_pred -----hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCCcccccCcccccccC
Q 001709 837 -----LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCPYVMPGAVSASLSWG 903 (1022)
Q Consensus 837 -----LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~~V~~~~~~a~~l~~ 903 (1022)
||||||||+ +|..+.+.+...+.+ +.. ..++++++|-...+..+|..+.+.+
T Consensus 493 ~~~~illlDEpts~-------------LD~~t~~~i~~~l~~-~~~-~~tvIivtHr~~~l~~~D~ii~l~~ 549 (592)
T PRK10790 493 QTPQILILDEATAN-------------IDSGTEQAIQQALAA-VRE-HTTLVVIAHRLSTIVEADTILVLHR 549 (592)
T ss_pred hCCCEEEEeCCccc-------------CCHHHHHHHHHHHHH-HhC-CCEEEEEecchHHHHhCCEEEEEEC
Confidence 999999997 777776666655543 332 3678888777766666666665543
No 171
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=7.7e-26 Score=243.11 Aligned_cols=154 Identities=16% Similarity=0.184 Sum_probs=122.9
Q ss_pred CeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc------hhhhcCceEEEcCCCCC-
Q 001709 711 FTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD------QEGIAGGLCYCDSAGVN- 780 (1022)
Q Consensus 711 ~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~------~~~lr~~IGyV~Q~~~~- 780 (1022)
++.+|++|||+|+ +++|+||||||||||+|+|+|++ +|++|+|.+++.++ ....++.|+||+|+...
T Consensus 13 ~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~---~p~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~ 89 (271)
T PRK13638 13 DEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLL---RPQKGAVLWQGKPLDYSKRGLLALRQQVATVFQDPEQQ 89 (271)
T ss_pred CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCC---CCCccEEEECCEEcccccCCHHHHHhheEEEeeChhhc
Confidence 4579999999998 99999999999999999999999 99999999998654 12456789999995443
Q ss_pred CccccccccchHHHHhcccc----c---hHHHHHHHH-HhcCCccccCCCcCCch-HHHHHHHHH---------hhhccc
Q 001709 781 LQELTMEAARFKDEMWMGIR----D---LSRKTDLIV-LVHNLSHKIPRYNYSSA-SGQQQPALS---------LLLNEA 842 (1022)
Q Consensus 781 ~~~lTV~~~~~~ENI~~g~~----~---~~~~v~~~L-~v~gL~~~~~r~~~~LS-GqrQRvaIA---------LLLDEP 842 (1022)
++..|+ .+|+.++.. . ..+++++++ .+ ||.++.++++.+|| |||||++|| ||||||
T Consensus 90 ~~~~~~-----~~~l~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~LSgG~~qrl~laraL~~~p~lllLDEP 163 (271)
T PRK13638 90 IFYTDI-----DSDIAFSLRNLGVPEAEITRRVDEALTLV-DAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEP 163 (271)
T ss_pred cccccH-----HHHHHHHHHHcCCCHHHHHHHHHHHHHHc-CCHhHhcCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 455678 899987532 1 234567778 77 99999999999999 999999999 999999
Q ss_pred cCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEec
Q 001709 843 KSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINS 887 (1022)
Q Consensus 843 TSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~ 887 (1022)
|++ +|...+..+...+.+. .+...++++++|
T Consensus 164 t~~-------------LD~~~~~~l~~~l~~~-~~~g~tii~vtH 194 (271)
T PRK13638 164 TAG-------------LDPAGRTQMIAIIRRI-VAQGNHVIISSH 194 (271)
T ss_pred ccc-------------CCHHHHHHHHHHHHHH-HHCCCEEEEEeC
Confidence 997 7777777777666543 344445556553
No 172
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.93 E-value=1.1e-25 Score=270.80 Aligned_cols=178 Identities=12% Similarity=0.157 Sum_probs=137.2
Q ss_pred ceeEEEEecCCCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc----hhhhcCceE
Q 001709 700 LSDVFIFCTSDFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD----QEGIAGGLC 772 (1022)
Q Consensus 700 l~~~~~~~~~~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~----~~~lr~~IG 772 (1022)
++++++.|. +..++|+||||+|+ .++|+||||||||||+|+|+|++ +|++|+|++||.++ ...+|+.||
T Consensus 476 ~~~vsf~y~-~~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~---~p~~G~I~idg~~i~~~~~~~lr~~i~ 551 (708)
T TIGR01193 476 INDVSYSYG-YGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFF---QARSGEILLNGFSLKDIDRHTLRQFIN 551 (708)
T ss_pred EEEEEEEcC-CCCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccC---CCCCcEEEECCEEHHHcCHHHHHHheE
Confidence 566666654 34679999999998 99999999999999999999999 99999999998664 667899999
Q ss_pred EEcCCCCCCccccccccchHHHHhccc-cc-hHHHHHHHH-Hh----------cCCccccCCCcCCch-HHHHHHHHH--
Q 001709 773 YCDSAGVNLQELTMEAARFKDEMWMGI-RD-LSRKTDLIV-LV----------HNLSHKIPRYNYSSA-SGQQQPALS-- 836 (1022)
Q Consensus 773 yV~Q~~~~~~~lTV~~~~~~ENI~~g~-~~-~~~~v~~~L-~v----------~gL~~~~~r~~~~LS-GqrQRvaIA-- 836 (1022)
||+| ++.++..|+ +|||.++. .+ .++++.+++ .. +|++....+.+..|| |||||++||
T Consensus 552 ~v~Q-~~~lf~gTI-----~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARa 625 (708)
T TIGR01193 552 YLPQ-EPYIFSGSI-----LENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARA 625 (708)
T ss_pred EEec-CceehhHHH-----HHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHH
Confidence 9999 555555899 99999984 32 233444444 32 345556667788999 999999999
Q ss_pred -------hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCCcccccCcccccccC
Q 001709 837 -------LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCPYVMPGAVSASLSWG 903 (1022)
Q Consensus 837 -------LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~~V~~~~~~a~~l~~ 903 (1022)
||||||||+ +|..+...+...+.+ + ...|++++.|-...+..+|..+.+.+
T Consensus 626 ll~~p~iliLDE~Ts~-------------LD~~te~~i~~~L~~-~--~~~T~IiitHr~~~~~~~D~i~~l~~ 683 (708)
T TIGR01193 626 LLTDSKVLILDESTSN-------------LDTITEKKIVNNLLN-L--QDKTIIFVAHRLSVAKQSDKIIVLDH 683 (708)
T ss_pred HhhCCCEEEEeCcccc-------------CCHHHHHHHHHHHHH-h--cCCEEEEEecchHHHHcCCEEEEEEC
Confidence 999999997 777777776666643 3 23577777766666666666665543
No 173
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=1.5e-25 Score=241.80 Aligned_cols=153 Identities=13% Similarity=0.160 Sum_probs=121.3
Q ss_pred eeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc-h-------hhhcCceEEEcCCCC-
Q 001709 712 TTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD-Q-------EGIAGGLCYCDSAGV- 779 (1022)
Q Consensus 712 ~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~-~-------~~lr~~IGyV~Q~~~- 779 (1022)
.++|+||||+|+ +++|+||||||||||+|+|+|++ +|++|+|.++|.++ . ..+++.|+|++|+..
T Consensus 20 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~---~p~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~~~ 96 (280)
T PRK13649 20 GRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLH---VPTQGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPES 96 (280)
T ss_pred cceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC---CCCceEEEECCEEccccccccCHHHHHhheEEEeeChhh
Confidence 469999999998 99999999999999999999999 99999999998654 1 345678999999532
Q ss_pred CCccccccccchHHHHhcccc----c---hHHHHHHHH-HhcCCc-cccCCCcCCch-HHHHHHHHH---------hhhc
Q 001709 780 NLQELTMEAARFKDEMWMGIR----D---LSRKTDLIV-LVHNLS-HKIPRYNYSSA-SGQQQPALS---------LLLN 840 (1022)
Q Consensus 780 ~~~~lTV~~~~~~ENI~~g~~----~---~~~~v~~~L-~v~gL~-~~~~r~~~~LS-GqrQRvaIA---------LLLD 840 (1022)
.++..|+ +||+.++.. . ..+++++++ .+ ||. ...++++.+|| |||||++|| ||||
T Consensus 97 ~~~~~tv-----~e~l~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLD 170 (280)
T PRK13649 97 QLFEETV-----LKDVAFGPQNFGVSQEEAEALAREKLALV-GISESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLD 170 (280)
T ss_pred hhccccH-----HHHHHHHHHHcCCCHHHHHHHHHHHHHHc-CCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 3444799 999987532 1 234567778 77 997 57899999999 999999999 9999
Q ss_pred cccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEec
Q 001709 841 EAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINS 887 (1022)
Q Consensus 841 EPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~ 887 (1022)
|||++ +|...+..+...+.+. .....++++++|
T Consensus 171 EPt~~-------------LD~~~~~~l~~~l~~~-~~~~~tiiivsH 203 (280)
T PRK13649 171 EPTAG-------------LDPKGRKELMTLFKKL-HQSGMTIVLVTH 203 (280)
T ss_pred CCccc-------------CCHHHHHHHHHHHHHH-HHCCCEEEEEec
Confidence 99997 7777777777666543 334445566653
No 174
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=1.8e-25 Score=236.69 Aligned_cols=152 Identities=13% Similarity=0.158 Sum_probs=120.5
Q ss_pred CeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCC-----CceEEEEccccc----hhhhcCceEEEcCCC
Q 001709 711 FTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRT-----INSGNLDAEADD----QEGIAGGLCYCDSAG 778 (1022)
Q Consensus 711 ~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~P-----tsG~I~idg~~~----~~~lr~~IGyV~Q~~ 778 (1022)
..++|+||||+|+ +++|+||||||||||+++|+|++ +| ++|+|.++|.++ ...+++.|||+||+.
T Consensus 15 ~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~---~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~ 91 (250)
T PRK14247 15 QVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLI---ELYPEARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIP 91 (250)
T ss_pred CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccC---CCCCCCCCceEEEECCEECCcCCHHHHhccEEEEeccC
Confidence 4679999999998 99999999999999999999998 74 799999998654 335577899999954
Q ss_pred CCCccccccccchHHHHhcccc------c---hHHHHHHHH-HhcCCc----cccCCCcCCch-HHHHHHHHH-------
Q 001709 779 VNLQELTMEAARFKDEMWMGIR------D---LSRKTDLIV-LVHNLS----HKIPRYNYSSA-SGQQQPALS------- 836 (1022)
Q Consensus 779 ~~~~~lTV~~~~~~ENI~~g~~------~---~~~~v~~~L-~v~gL~----~~~~r~~~~LS-GqrQRvaIA------- 836 (1022)
..++.+|+ .||+.++.. . ..+++.+++ .+ ||. +..++.+.+|| |||||++||
T Consensus 92 ~~~~~~tv-----~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p 165 (250)
T PRK14247 92 NPIPNLSI-----FENVALGLKLNRLVKSKKELQERVRWALEKA-QLWDEVKDRLDAPAGKLSGGQQQRLCIARALAFQP 165 (250)
T ss_pred ccCCCCcH-----HHHHHHHHHhccccCCHHHHHHHHHHHHHHc-CCCcchhhhhcCCcccCCHHHHHHHHHHHHHhcCC
Confidence 44778999 999987532 1 234567777 77 874 45789999999 999999999
Q ss_pred --hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEe
Q 001709 837 --LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVIN 886 (1022)
Q Consensus 837 --LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~ 886 (1022)
|||||||++ +|...+..+...+.+. .. ..++++++
T Consensus 166 ~lllLDEP~~~-------------LD~~~~~~l~~~l~~~-~~-~~tiii~s 202 (250)
T PRK14247 166 EVLLADEPTAN-------------LDPENTAKIESLFLEL-KK-DMTIVLVT 202 (250)
T ss_pred CEEEEcCCCcc-------------CCHHHHHHHHHHHHHH-hc-CCEEEEEe
Confidence 999999997 6777777776666543 33 34555555
No 175
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=1.8e-25 Score=231.47 Aligned_cols=153 Identities=18% Similarity=0.218 Sum_probs=121.3
Q ss_pred CCeeEEEeeeEEEe--EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc-h-------hhhcCceEEEcCCCC
Q 001709 710 DFTTVFKEVHFRTR--RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD-Q-------EGIAGGLCYCDSAGV 779 (1022)
Q Consensus 710 ~~~~aLkdVSL~V~--iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~-~-------~~lr~~IGyV~Q~~~ 779 (1022)
+++.+ ||||+|+ +++|+||||||||||+++|+|++ +|++|+|.+++.++ . ...++.++|++|+..
T Consensus 11 ~~~~~--~vsl~i~~e~~~i~G~nGsGKSTLl~~l~G~~---~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~ 85 (214)
T cd03297 11 PDFTL--KIDFDLNEEVTGIFGASGAGKSTLLRCIAGLE---KPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYA 85 (214)
T ss_pred CCeee--CceEEEcceeEEEECCCCCCHHHHHHHHhCCC---CCCCceEEECCEecccccchhhhhhHhhcEEEEecCCc
Confidence 34444 9999997 99999999999999999999999 99999999998653 1 134678999999544
Q ss_pred CCccccccccchHHHHhccccc-----hHHHHHHHH-HhcCCccccCCCcCCch-HHHHHHHHH---------hhhcccc
Q 001709 780 NLQELTMEAARFKDEMWMGIRD-----LSRKTDLIV-LVHNLSHKIPRYNYSSA-SGQQQPALS---------LLLNEAK 843 (1022)
Q Consensus 780 ~~~~lTV~~~~~~ENI~~g~~~-----~~~~v~~~L-~v~gL~~~~~r~~~~LS-GqrQRvaIA---------LLLDEPT 843 (1022)
.++.+|+ .||+.++... .++++.+++ .+ |+.+..++++.+|| |||||++|| |||||||
T Consensus 86 ~~~~~t~-----~~~l~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt 159 (214)
T cd03297 86 LFPHLNV-----RENLAFGLKRKRNREDRISVDELLDLL-GLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPF 159 (214)
T ss_pred cCCCCCH-----HHHHHHHHhhCCHHHHHHHHHHHHHHc-CCHhHhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 4777999 9999875431 244677788 77 99988999999999 999999999 9999999
Q ss_pred CCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEe
Q 001709 844 SLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVIN 886 (1022)
Q Consensus 844 Sad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~ 886 (1022)
++ +|...+..+...+.+..++...++++++
T Consensus 160 ~~-------------LD~~~~~~l~~~l~~~~~~~~~tiii~s 189 (214)
T cd03297 160 SA-------------LDRALRLQLLPELKQIKKNLNIPVIFVT 189 (214)
T ss_pred cc-------------CCHHHHHHHHHHHHHHHHHcCcEEEEEe
Confidence 97 7777777776655544333234556665
No 176
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=2e-25 Score=234.15 Aligned_cols=151 Identities=20% Similarity=0.223 Sum_probs=121.4
Q ss_pred EeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc--hhhhcCceEEEcCCCCCCccccccccc
Q 001709 716 KEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD--QEGIAGGLCYCDSAGVNLQELTMEAAR 790 (1022)
Q Consensus 716 kdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~--~~~lr~~IGyV~Q~~~~~~~lTV~~~~ 790 (1022)
.+|||+++ +++|+||||||||||+|+|+|++ +|++|+|.+++.++ ....++.++|+||+...++.+|+
T Consensus 16 ~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~---~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv---- 88 (232)
T PRK10771 16 MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFL---TPASGSLTLNGQDHTTTPPSRRPVSMLFQENNLFSHLTV---- 88 (232)
T ss_pred ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC---CCCCceEEECCeecCcCChhhccEEEEecccccccCCcH----
Confidence 38999998 99999999999999999999999 99999999998765 22235689999995444777899
Q ss_pred hHHHHhcccc-------chHHHHHHHH-HhcCCccccCCCcCCch-HHHHHHHHH---------hhhccccCCChhHHHH
Q 001709 791 FKDEMWMGIR-------DLSRKTDLIV-LVHNLSHKIPRYNYSSA-SGQQQPALS---------LLLNEAKSLGIPWVLA 852 (1022)
Q Consensus 791 ~~ENI~~g~~-------~~~~~v~~~L-~v~gL~~~~~r~~~~LS-GqrQRvaIA---------LLLDEPTSad~~~v~~ 852 (1022)
.||+.++.. ...+++.+++ .+ ||.+..++++.+|| |||||++|| |||||||++
T Consensus 89 -~e~l~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~g------- 159 (232)
T PRK10771 89 -AQNIGLGLNPGLKLNAAQREKLHAIARQM-GIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSA------- 159 (232)
T ss_pred -HHHHhcccccccCCCHHHHHHHHHHHHHc-CcHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccc-------
Confidence 999987532 1245677888 77 99999999999999 999999999 999999996
Q ss_pred HhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecC
Q 001709 853 ITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSC 888 (1022)
Q Consensus 853 I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~ 888 (1022)
+|...+..+...+.+..+....++++++|.
T Consensus 160 ------LD~~~~~~~~~~l~~~~~~~~~tiii~sH~ 189 (232)
T PRK10771 160 ------LDPALRQEMLTLVSQVCQERQLTLLMVSHS 189 (232)
T ss_pred ------CCHHHHHHHHHHHHHHHHhcCCEEEEEECC
Confidence 777777777766654434334466666533
No 177
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.93 E-value=1.7e-25 Score=231.92 Aligned_cols=164 Identities=18% Similarity=0.224 Sum_probs=123.7
Q ss_pred eeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc----hhhhcCceEEEcCCCCCCccc
Q 001709 712 TTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD----QEGIAGGLCYCDSAGVNLQEL 784 (1022)
Q Consensus 712 ~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~----~~~lr~~IGyV~Q~~~~~~~l 784 (1022)
.++|+||||+|+ +++|+||||||||||+++|+|++ +|++|+|.++|.++ ....++.++|++|+...++ .
T Consensus 17 ~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~---~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~ 92 (220)
T cd03245 17 IPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLY---KPTSGSVLLDGTDIRQLDPADLRRNIGYVPQDVTLFY-G 92 (220)
T ss_pred cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCc---CCCCCeEEECCEEhHHCCHHHHHhhEEEeCCCCcccc-c
Confidence 569999999998 99999999999999999999999 99999999998654 2345678999999543355 7
Q ss_pred cccccchHHHHhccccc-hHHHHHHHH-HhcCCccccCCCc-----------CCch-HHHHHHHHH---------hhhcc
Q 001709 785 TMEAARFKDEMWMGIRD-LSRKTDLIV-LVHNLSHKIPRYN-----------YSSA-SGQQQPALS---------LLLNE 841 (1022)
Q Consensus 785 TV~~~~~~ENI~~g~~~-~~~~v~~~L-~v~gL~~~~~r~~-----------~~LS-GqrQRvaIA---------LLLDE 841 (1022)
|+ .||+.++... ..+.+.+++ .+ ++.+..++.+ .+|| |||||++|| |||||
T Consensus 93 tv-----~e~l~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~llllDE 166 (220)
T cd03245 93 TL-----RDNITLGAPLADDERILRAAELA-GVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDE 166 (220)
T ss_pred hH-----HHHhhcCCCCCCHHHHHHHHHHc-CcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 99 9999876432 334566677 66 8877766654 6999 999999999 99999
Q ss_pred ccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCCcccccCccccc
Q 001709 842 AKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCPYVMPGAVSASL 900 (1022)
Q Consensus 842 PTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~~V~~~~~~a~~ 900 (1022)
||++ +|...+..+...+.+ +... .++++++|.......++..+.
T Consensus 167 Pt~~-------------LD~~~~~~l~~~l~~-~~~~-~tii~~sH~~~~~~~~d~v~~ 210 (220)
T cd03245 167 PTSA-------------MDMNSEERLKERLRQ-LLGD-KTLIIITHRPSLLDLVDRIIV 210 (220)
T ss_pred cccc-------------CCHHHHHHHHHHHHH-hcCC-CEEEEEeCCHHHHHhCCEEEE
Confidence 9996 777777777766644 3332 455555543333333333333
No 178
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=1.8e-25 Score=234.76 Aligned_cols=171 Identities=17% Similarity=0.128 Sum_probs=133.1
Q ss_pred CeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc--hhhhcCceEEEcCCCCCCcccc
Q 001709 711 FTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD--QEGIAGGLCYCDSAGVNLQELT 785 (1022)
Q Consensus 711 ~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~--~~~lr~~IGyV~Q~~~~~~~lT 785 (1022)
.+++++++||+++ +++|+|+||||||||+++|+|++ +|++|+|+++|.+. ....++.++|++|+...|+.+|
T Consensus 12 ~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~---~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~t 88 (232)
T cd03300 12 GFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFE---TPTSGEILLDGKDITNLPPHKRPVNTVFQNYALFPHLT 88 (232)
T ss_pred CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCC---CCCceEEEECCEEcCcCChhhcceEEEecccccCCCCc
Confidence 4579999999998 99999999999999999999999 99999999998665 2223678999999544477789
Q ss_pred ccccchHHHHhcccc-------chHHHHHHHH-HhcCCccccCCCcCCch-HHHHHHHHH---------hhhccccCCCh
Q 001709 786 MEAARFKDEMWMGIR-------DLSRKTDLIV-LVHNLSHKIPRYNYSSA-SGQQQPALS---------LLLNEAKSLGI 847 (1022)
Q Consensus 786 V~~~~~~ENI~~g~~-------~~~~~v~~~L-~v~gL~~~~~r~~~~LS-GqrQRvaIA---------LLLDEPTSad~ 847 (1022)
+ .||+.++.. ...++++.++ .+ ||.+..++.+.+|| |||||++|| |||||||++
T Consensus 89 ~-----~~nl~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~g-- 160 (232)
T cd03300 89 V-----FENIAFGLRLKKLPKAEIKERVAEALDLV-QLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGA-- 160 (232)
T ss_pred H-----HHHHHHHHHhcCCCHHHHHHHHHHHHHHc-CCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccc--
Confidence 9 999986532 1245677778 77 99999999999999 999999999 999999997
Q ss_pred hHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCCc-ccccCcccccccC
Q 001709 848 PWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCPY-VMPGAVSASLSWG 903 (1022)
Q Consensus 848 ~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~~-V~~~~~~a~~l~~ 903 (1022)
+|...+..+...+.+..++...+++++.|... +...++..+.+.+
T Consensus 161 -----------LD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~ 206 (232)
T cd03300 161 -----------LDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNK 206 (232)
T ss_pred -----------CCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEEC
Confidence 77777777776665443333456666654333 4445555555443
No 179
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.93 E-value=9.8e-26 Score=272.08 Aligned_cols=178 Identities=15% Similarity=0.131 Sum_probs=134.2
Q ss_pred ceeEEEEecCC-CeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc----hhhhcCce
Q 001709 700 LSDVFIFCTSD-FTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD----QEGIAGGL 771 (1022)
Q Consensus 700 l~~~~~~~~~~-~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~----~~~lr~~I 771 (1022)
++++++.|... ++++|+|+||+|+ +++|+||||||||||+|+|+|++ +|++|+|.+||.++ ...++++|
T Consensus 481 ~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~---~p~~G~I~idg~~i~~~~~~~lr~~i 557 (711)
T TIGR00958 481 FQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLY---QPTGGQVLLDGVPLVQYDHHYLHRQV 557 (711)
T ss_pred EEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhcc---CCCCCEEEECCEEHHhcCHHHHHhhc
Confidence 66666666432 3679999999999 99999999999999999999999 99999999998664 56788999
Q ss_pred EEEcCCCCCCccccccccchHHHHhccccc-hHHHHHHHH-Hh----------cCCccccCCCcCCch-HHHHHHHHH--
Q 001709 772 CYCDSAGVNLQELTMEAARFKDEMWMGIRD-LSRKTDLIV-LV----------HNLSHKIPRYNYSSA-SGQQQPALS-- 836 (1022)
Q Consensus 772 GyV~Q~~~~~~~lTV~~~~~~ENI~~g~~~-~~~~v~~~L-~v----------~gL~~~~~r~~~~LS-GqrQRvaIA-- 836 (1022)
+||+| ++.++..|+ +|||.++..+ .++++.+++ .. .|++...++...+|| |||||++||
T Consensus 558 ~~v~Q-~~~lF~gTI-----reNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARA 631 (711)
T TIGR00958 558 ALVGQ-EPVLFSGSV-----RENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARA 631 (711)
T ss_pred eEEec-CccccccCH-----HHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHH
Confidence 99999 556555899 9999998653 344555555 43 234444556677899 999999999
Q ss_pred -------hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCCcccccCcccccccC
Q 001709 837 -------LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCPYVMPGAVSASLSWG 903 (1022)
Q Consensus 837 -------LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~~V~~~~~~a~~l~~ 903 (1022)
||||||||+ +|..+...+.. . . .....|++++.|-...+..+|..+.+.+
T Consensus 632 Ll~~p~ILILDEpTSa-------------LD~~te~~i~~-~-~--~~~~~TvIiItHrl~~i~~aD~IivL~~ 688 (711)
T TIGR00958 632 LVRKPRVLILDEATSA-------------LDAECEQLLQE-S-R--SRASRTVLLIAHRLSTVERADQILVLKK 688 (711)
T ss_pred HhcCCCEEEEEccccc-------------cCHHHHHHHHH-h-h--ccCCCeEEEEeccHHHHHhCCEEEEEEC
Confidence 999999997 66655444443 1 1 1223466777666556666666666644
No 180
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.93 E-value=2.2e-25 Score=238.92 Aligned_cols=155 Identities=17% Similarity=0.192 Sum_probs=122.6
Q ss_pred CeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc----hh---hhcCceEEEcCCCC-
Q 001709 711 FTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD----QE---GIAGGLCYCDSAGV- 779 (1022)
Q Consensus 711 ~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~----~~---~lr~~IGyV~Q~~~- 779 (1022)
.+.+|+||||+|+ +++|+|||||||||||++|+|++ +|++|+|+++|.++ .. .+++.|+||+|+..
T Consensus 23 ~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~---~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~ 99 (265)
T TIGR02769 23 RAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLE---KPAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPS 99 (265)
T ss_pred ceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCC---CCCCcEEEECCEEccccCHHHHHHHhhceEEEecChhh
Confidence 4679999999998 99999999999999999999999 99999999998654 11 24678999999542
Q ss_pred C-CccccccccchHHHHhcccc--------chHHHHHHHH-HhcCCc-cccCCCcCCch-HHHHHHHHH---------hh
Q 001709 780 N-LQELTMEAARFKDEMWMGIR--------DLSRKTDLIV-LVHNLS-HKIPRYNYSSA-SGQQQPALS---------LL 838 (1022)
Q Consensus 780 ~-~~~lTV~~~~~~ENI~~g~~--------~~~~~v~~~L-~v~gL~-~~~~r~~~~LS-GqrQRvaIA---------LL 838 (1022)
. ++.+|+ .||+.++.. ...+++.+++ .+ ||. +..++++.+|| |||||++|| ||
T Consensus 100 ~~~~~~tv-----~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~-gl~~~~~~~~~~~LSgGe~qrv~laral~~~p~ill 173 (265)
T TIGR02769 100 AVNPRMTV-----RQIIGEPLRHLTSLDESEQKARIAELLDMV-GLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIV 173 (265)
T ss_pred hcCCCCCH-----HHHHHHHHHHhcCCCHHHHHHHHHHHHHHc-CCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 2 567899 999865422 1235677888 77 996 67899999999 999999999 99
Q ss_pred hccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEec
Q 001709 839 LNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINS 887 (1022)
Q Consensus 839 LDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~ 887 (1022)
|||||++ +|...+..+...+.+..+....++++++|
T Consensus 174 LDEPt~~-------------LD~~~~~~l~~~l~~~~~~~g~tiiivsH 209 (265)
T TIGR02769 174 LDEAVSN-------------LDMVLQAVILELLRKLQQAFGTAYLFITH 209 (265)
T ss_pred EeCCccc-------------CCHHHHHHHHHHHHHHHHhcCcEEEEEeC
Confidence 9999997 77777777666665444333446666653
No 181
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=1.2e-25 Score=257.59 Aligned_cols=181 Identities=18% Similarity=0.161 Sum_probs=147.5
Q ss_pred ceeEEEEecCCCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc----hhhhcCceE
Q 001709 700 LSDVFIFCTSDFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD----QEGIAGGLC 772 (1022)
Q Consensus 700 l~~~~~~~~~~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~----~~~lr~~IG 772 (1022)
++++.|.|. +++++|++|||+|+ .|||+|+|||||||++|+|.+|+ + ++|+|++||.++ .+.+|+-||
T Consensus 354 F~dV~f~y~-~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~---d-~sG~I~IdG~dik~~~~~SlR~~Ig 428 (591)
T KOG0057|consen 354 FDDVHFSYG-PKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFF---D-YSGSILIDGQDIKEVSLESLRQSIG 428 (591)
T ss_pred EEeeEEEeC-CCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHh---c-cCCcEEECCeeHhhhChHHhhhhee
Confidence 666666665 45679999999999 99999999999999999999999 7 999999998775 778999999
Q ss_pred EEcCCCCCCccccccccchHHHHhccccc-hHHHHHHHH-Hh----------cCCccccCCCcCCch-HHHHHHHHH---
Q 001709 773 YCDSAGVNLQELTMEAARFKDEMWMGIRD-LSRKTDLIV-LV----------HNLSHKIPRYNYSSA-SGQQQPALS--- 836 (1022)
Q Consensus 773 yV~Q~~~~~~~lTV~~~~~~ENI~~g~~~-~~~~v~~~L-~v----------~gL~~~~~r~~~~LS-GqrQRvaIA--- 836 (1022)
|||| +..+++.|| ..||.||... ..+++-++. .. +|.....+++...|| ||||||+||
T Consensus 429 ~VPQ-d~~LFndTI-----l~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~ 502 (591)
T KOG0057|consen 429 VVPQ-DSVLFNDTI-----LYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAF 502 (591)
T ss_pred EeCC-cccccchhH-----HHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHH
Confidence 9999 555666899 9999999874 233344444 33 234445667777899 999999999
Q ss_pred ------hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCCcccccCcccccccCCCC
Q 001709 837 ------LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCPYVMPGAVSASLSWGASG 906 (1022)
Q Consensus 837 ------LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~~V~~~~~~a~~l~~~~~ 906 (1022)
++||||||+ ||.++...++..+++ ...+.|+++|-|-...+..+|+.+++..-..
T Consensus 503 lKda~Il~~DEaTS~-------------LD~~TE~~i~~~i~~--~~~~rTvI~IvH~l~ll~~~DkI~~l~nG~v 563 (591)
T KOG0057|consen 503 LKDAPILLLDEATSA-------------LDSETEREILDMIMD--VMSGRTVIMIVHRLDLLKDFDKIIVLDNGTV 563 (591)
T ss_pred hcCCCeEEecCcccc-------------cchhhHHHHHHHHHH--hcCCCeEEEEEecchhHhcCCEEEEEECCee
Confidence 999999997 888999999998887 4556677777777777788899888877544
No 182
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=2.2e-25 Score=234.22 Aligned_cols=154 Identities=19% Similarity=0.233 Sum_probs=121.4
Q ss_pred CeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc----hh-hhcCceEEEcCCCCCCc
Q 001709 711 FTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD----QE-GIAGGLCYCDSAGVNLQ 782 (1022)
Q Consensus 711 ~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~----~~-~lr~~IGyV~Q~~~~~~ 782 (1022)
...+|++|||+|+ +++|+||||||||||+|+|+|++ +|++|+|.++|.++ .. ..++.++|++|+...|+
T Consensus 17 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~---~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~ 93 (237)
T PRK11614 17 KIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDP---RATSGRIVFDGKDITDWQTAKIMREAVAIVPEGRRVFS 93 (237)
T ss_pred CceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCC---CCCCceEEECCEecCCCCHHHHHHhCEEEeccCcccCC
Confidence 4679999999999 99999999999999999999999 99999999998664 12 24678999999544477
Q ss_pred cccccccchHHHHhcccc--c---hHHHHHHHH-HhcCCccccCCCcCCch-HHHHHHHHH---------hhhccccCCC
Q 001709 783 ELTMEAARFKDEMWMGIR--D---LSRKTDLIV-LVHNLSHKIPRYNYSSA-SGQQQPALS---------LLLNEAKSLG 846 (1022)
Q Consensus 783 ~lTV~~~~~~ENI~~g~~--~---~~~~v~~~L-~v~gL~~~~~r~~~~LS-GqrQRvaIA---------LLLDEPTSad 846 (1022)
.+|| .||+.++.. . ..+++.+++ .+.++.+..++++.+|| |||||++|| |||||||++
T Consensus 94 ~~tv-----~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~illlDEPt~~- 167 (237)
T PRK11614 94 RMTV-----EENLAMGGFFAERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLG- 167 (237)
T ss_pred CCcH-----HHHHHHhhhccChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCcccc-
Confidence 7899 999987532 1 234456666 55247777889999999 999999999 999999997
Q ss_pred hhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEe
Q 001709 847 IPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVIN 886 (1022)
Q Consensus 847 ~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~ 886 (1022)
+|...+..+...+.+ +.....++++++
T Consensus 168 ------------LD~~~~~~l~~~l~~-~~~~~~tiii~s 194 (237)
T PRK11614 168 ------------LAPIIIQQIFDTIEQ-LREQGMTIFLVE 194 (237)
T ss_pred ------------CCHHHHHHHHHHHHH-HHHCCCEEEEEe
Confidence 777777776666544 444444555555
No 183
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.93 E-value=2.2e-25 Score=231.23 Aligned_cols=176 Identities=16% Similarity=0.116 Sum_probs=126.6
Q ss_pred eeEEEEecCCCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc----hhhhcCceEE
Q 001709 701 SDVFIFCTSDFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD----QEGIAGGLCY 773 (1022)
Q Consensus 701 ~~~~~~~~~~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~----~~~lr~~IGy 773 (1022)
+++.+.+..+.+++|+||||+++ +++|+||||||||||+|+|+|++ +|++|+|.+++.++ ...+++.++|
T Consensus 6 ~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~---~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 82 (221)
T cd03244 6 KNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLV---ELSSGSILIDGVDISKIGLHDLRSRISI 82 (221)
T ss_pred EEEEEecCCCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCC---CCCCCEEEECCEEhHhCCHHHHhhhEEE
Confidence 34344443333579999999999 99999999999999999999999 99999999998654 3356788999
Q ss_pred EcCCCCCCccccccccchHHHHhccccchHHHHHHHH-HhcCCccc-----------cCCCcCCch-HHHHHHHHH----
Q 001709 774 CDSAGVNLQELTMEAARFKDEMWMGIRDLSRKTDLIV-LVHNLSHK-----------IPRYNYSSA-SGQQQPALS---- 836 (1022)
Q Consensus 774 V~Q~~~~~~~lTV~~~~~~ENI~~g~~~~~~~v~~~L-~v~gL~~~-----------~~r~~~~LS-GqrQRvaIA---- 836 (1022)
+||+ ..++..|+ +||+.+......+++.+++ .+ ++.+. .++++.+|| |||||++||
T Consensus 83 ~~q~-~~l~~~tv-----~enl~~~~~~~~~~~~~~~~~~-~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~ 155 (221)
T cd03244 83 IPQD-PVLFSGTI-----RSNLDPFGEYSDEELWQALERV-GLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALL 155 (221)
T ss_pred ECCC-CccccchH-----HHHhCcCCCCCHHHHHHHHHHh-CcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHh
Confidence 9994 44444799 9999865432334444555 44 55443 357899999 999999999
Q ss_pred -----hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCCcccccCcccccc
Q 001709 837 -----LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCPYVMPGAVSASLS 901 (1022)
Q Consensus 837 -----LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~~V~~~~~~a~~l 901 (1022)
|||||||++ +|...+..+...+.+. .. ..++++++|.......++..+.+
T Consensus 156 ~~p~llllDEP~~~-------------LD~~~~~~l~~~l~~~-~~-~~tii~~sh~~~~~~~~d~i~~l 210 (221)
T cd03244 156 RKSKILVLDEATAS-------------VDPETDALIQKTIREA-FK-DCTVLTIAHRLDTIIDSDRILVL 210 (221)
T ss_pred cCCCEEEEeCcccc-------------CCHHHHHHHHHHHHHh-cC-CCEEEEEeCCHHHHhhCCEEEEE
Confidence 999999997 7777777776666543 32 34555555443333334444444
No 184
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=99.93 E-value=2e-26 Score=259.46 Aligned_cols=256 Identities=17% Similarity=0.161 Sum_probs=182.6
Q ss_pred eecccceeeeeeeeeecCcccccceeccCCCCccCCCCCCchhhhhhhhhccCcCCCCCCc----------cccccccCC
Q 001709 605 ISGFRLHLCSLVHAQVNGNWCSTTVESFPSAPTYSSNIGVQPELQQMRVLVGAPLRRPPNL----------SISVFPSID 674 (1022)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~w~~t~~e~~p~~p~~~~~~~~~~~lq~mr~~~~~Plk~l~~~----------~~~vf~~ld 674 (1022)
|+|+||---+|.-|. ..+|.+..|--| --+-+-=+.++.||-=.+.+ +|.||+++.
T Consensus 452 Ii~lgll~gsll~aY-------~Vt~q~ltVGDf-------Vlf~TYliqLy~PLN~FGT~YR~iQ~nfiDmEnmfdllk 517 (790)
T KOG0056|consen 452 IIGLGLLAGSLLCAY-------RVTEQTLTVGDF-------VLFLTYLIQLYMPLNFFGTYYRSIQKNFIDMENMFDLLK 517 (790)
T ss_pred hhhhHHhhhhheeee-------eeeeccccccce-------ehHHHHHHHHhCchHHHHHHHHHHHHhhhhHHHHHHHhh
Confidence 677877654444332 123667777766 11222335566776544433 999999999
Q ss_pred CcchhhcccCCCCCCCCCCcccccCceeEEEEecCCCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCC
Q 001709 675 SETIDCCMEHGSGSADDEKFIRPEGLSDVFIFCTSDFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRT 751 (1022)
Q Consensus 675 ~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~P 751 (1022)
+++.....++..+....+..|. +++++|.| ..++++|+||||++. .+||+||||+||||++|+|.+++ +.
T Consensus 518 ee~eVvd~P~a~pl~~~~G~i~---fsnvtF~Y-~p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRff---dv 590 (790)
T KOG0056|consen 518 EEPEVVDLPGAPPLKVTQGKIE---FSNVTFAY-DPGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFF---DV 590 (790)
T ss_pred cCchhhcCCCCCCccccCCeEE---EEEeEEec-CCCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHh---hc
Confidence 8886665555555455555566 67777555 457899999999998 99999999999999999999999 89
Q ss_pred CceEEEEccccc----hhhhcCceEEEcCCCCCCccccccccchHHHHhccccc-----------hHHHHHHHH-HhcCC
Q 001709 752 INSGNLDAEADD----QEGIAGGLCYCDSAGVNLQELTMEAARFKDEMWMGIRD-----------LSRKTDLIV-LVHNL 815 (1022)
Q Consensus 752 tsG~I~idg~~~----~~~lr~~IGyV~Q~~~~~~~lTV~~~~~~ENI~~g~~~-----------~~~~v~~~L-~v~gL 815 (1022)
++|.|.|||.|+ ..++|..||.||| +..+++.|+ ..||.|+... .....+.++ ..+|.
T Consensus 591 ~sGsI~iDgqdIrnvt~~SLRs~IGVVPQ-DtvLFNdTI-----~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY 664 (790)
T KOG0056|consen 591 NSGSITIDGQDIRNVTQSSLRSSIGVVPQ-DTVLFNDTI-----LYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGY 664 (790)
T ss_pred cCceEEEcCchHHHHHHHHHHHhcCcccC-cceeeccee-----eeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhh
Confidence 999999999876 6789999999999 555666899 9999998762 122345556 66677
Q ss_pred ccccCCCcCCch-HHHHHHHHH---------hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEE
Q 001709 816 SHKIPRYNYSSA-SGQQQPALS---------LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVI 885 (1022)
Q Consensus 816 ~~~~~r~~~~LS-GqrQRvaIA---------LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv 885 (1022)
....++++-.|| |+||||||| +||||+||| +|+++.+.+. ..+..+-+. .|++||
T Consensus 665 ~t~VGERGLkLSGGEKQRVAiARtiLK~P~iIlLDEATSA-------------LDT~tER~IQ-aaL~rlca~-RTtIVv 729 (790)
T KOG0056|consen 665 NTRVGERGLKLSGGEKQRVAIARTILKAPSIILLDEATSA-------------LDTNTERAIQ-AALARLCAN-RTTIVV 729 (790)
T ss_pred hhhhhhcccccCCcchhhHHHHHHHhcCCcEEEEcchhhh-------------cCCccHHHHH-HHHHHHhcC-CceEEE
Confidence 778889999999 999999999 999999997 7776655544 444544444 345554
Q ss_pred -ecCCcccccCcccccccC
Q 001709 886 -NSCPYVMPGAVSASLSWG 903 (1022)
Q Consensus 886 -~~~~~V~~~~~~a~~l~~ 903 (1022)
|.-..|+ .+|..+.+.+
T Consensus 730 AHRLSTiv-nAD~ILvi~~ 747 (790)
T KOG0056|consen 730 AHRLSTIV-NADLILVISN 747 (790)
T ss_pred eeeehhee-cccEEEEEeC
Confidence 4433333 3444444433
No 185
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.93 E-value=2.1e-25 Score=232.30 Aligned_cols=152 Identities=15% Similarity=0.138 Sum_probs=123.7
Q ss_pred CeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc-hhhhcCceEEEcCCCCCCccccc
Q 001709 711 FTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD-QEGIAGGLCYCDSAGVNLQELTM 786 (1022)
Q Consensus 711 ~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~-~~~lr~~IGyV~Q~~~~~~~lTV 786 (1022)
.+++|+++||+++ +++|+||||||||||+++|+|++ +|++|+|.+++.++ ... ++.++|+||+...++.+|+
T Consensus 12 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~---~~~~G~i~~~~~~~~~~~-~~~~~~~~q~~~~~~~~t~ 87 (223)
T TIGR03740 12 KQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGIL---RPTSGEIIFDGHPWTRKD-LHKIGSLIESPPLYENLTA 87 (223)
T ss_pred CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC---CCCceEEEECCEeccccc-cccEEEEcCCCCccccCCH
Confidence 4679999999998 99999999999999999999999 99999999998765 222 3579999995444777899
Q ss_pred cccchHHHHhcccc---chHHHHHHHH-HhcCCccccCCCcCCch-HHHHHHHHH---------hhhccccCCChhHHHH
Q 001709 787 EAARFKDEMWMGIR---DLSRKTDLIV-LVHNLSHKIPRYNYSSA-SGQQQPALS---------LLLNEAKSLGIPWVLA 852 (1022)
Q Consensus 787 ~~~~~~ENI~~g~~---~~~~~v~~~L-~v~gL~~~~~r~~~~LS-GqrQRvaIA---------LLLDEPTSad~~~v~~ 852 (1022)
+||+.++.. ...+++.+++ .+ ||.+..++.+.+|| |||||++|| |||||||++
T Consensus 88 -----~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~LS~G~~~rv~laral~~~p~llllDEP~~~------- 154 (223)
T TIGR03740 88 -----RENLKVHTTLLGLPDSRIDEVLNIV-DLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNG------- 154 (223)
T ss_pred -----HHHHHHHHHHcCCCHHHHHHHHHHc-CCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccC-------
Confidence 999976432 1345677888 77 99999999999999 999999999 999999996
Q ss_pred HhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEe
Q 001709 853 ITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVIN 886 (1022)
Q Consensus 853 I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~ 886 (1022)
+|...+..+...+.+. .....++++++
T Consensus 155 ------LD~~~~~~l~~~L~~~-~~~~~tiii~s 181 (223)
T TIGR03740 155 ------LDPIGIQELRELIRSF-PEQGITVILSS 181 (223)
T ss_pred ------CCHHHHHHHHHHHHHH-HHCCCEEEEEc
Confidence 7777777776666543 43334555555
No 186
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=2.4e-25 Score=240.28 Aligned_cols=178 Identities=15% Similarity=0.114 Sum_probs=133.3
Q ss_pred ceeEEEEecCCCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc------hhhhcCc
Q 001709 700 LSDVFIFCTSDFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD------QEGIAGG 770 (1022)
Q Consensus 700 l~~~~~~~~~~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~------~~~lr~~ 770 (1022)
++++.+.+. +..++|+||||+|+ +++|+||||||||||+|+|+|++ +|++|+|.++|.++ ...+++.
T Consensus 4 ~~~l~~~~~-~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~---~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (275)
T PRK13639 4 TRDLKYSYP-DGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGIL---KPTSGEVLIKGEPIKYDKKSLLEVRKT 79 (275)
T ss_pred EEEEEEEeC-CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC---CCCccEEEECCEECccccchHHHHHhh
Confidence 334444442 23579999999999 99999999999999999999999 99999999998654 1245678
Q ss_pred eEEEcCCCC-CCccccccccchHHHHhcccc-------chHHHHHHHH-HhcCCccccCCCcCCch-HHHHHHHHH----
Q 001709 771 LCYCDSAGV-NLQELTMEAARFKDEMWMGIR-------DLSRKTDLIV-LVHNLSHKIPRYNYSSA-SGQQQPALS---- 836 (1022)
Q Consensus 771 IGyV~Q~~~-~~~~lTV~~~~~~ENI~~g~~-------~~~~~v~~~L-~v~gL~~~~~r~~~~LS-GqrQRvaIA---- 836 (1022)
|+|++|+.. .++.+|+ .||+.++.. ...+++.+++ .+ ||.++.++++.+|| |||||++||
T Consensus 80 i~~v~q~~~~~~~~~tv-----~e~i~~~~~~~~~~~~~~~~~~~~~l~~~-~L~~~~~~~~~~LS~Gq~qrv~laral~ 153 (275)
T PRK13639 80 VGIVFQNPDDQLFAPTV-----EEDVAFGPLNLGLSKEEVEKRVKEALKAV-GMEGFENKPPHHLSGGQKKRVAIAGILA 153 (275)
T ss_pred eEEEeeChhhhhccccH-----HHHHHHHHHHcCCCHHHHHHHHHHHHHHC-CCchhhcCChhhCCHHHHHHHHHHHHHh
Confidence 999999533 3445799 999987532 1235677788 77 99999999999999 999999999
Q ss_pred -----hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCCcc-cccCcccccc
Q 001709 837 -----LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCPYV-MPGAVSASLS 901 (1022)
Q Consensus 837 -----LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~~V-~~~~~~a~~l 901 (1022)
|||||||++ +|...+..+...+.+. .....++++++|.... ...++..+++
T Consensus 154 ~~p~llllDEPt~g-------------LD~~~~~~l~~~l~~l-~~~~~til~vtH~~~~~~~~~d~i~~l 210 (275)
T PRK13639 154 MKPEIIVLDEPTSG-------------LDPMGASQIMKLLYDL-NKEGITIIISTHDVDLVPVYADKVYVM 210 (275)
T ss_pred cCCCEEEEeCCCcC-------------CCHHHHHHHHHHHHHH-HHCCCEEEEEecCHHHHHHhCCEEEEE
Confidence 999999997 7777777777766544 3344466666533332 2234444444
No 187
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=2.4e-25 Score=241.67 Aligned_cols=152 Identities=13% Similarity=0.175 Sum_probs=120.1
Q ss_pred eEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc---------hhhhcCceEEEcCCCCC
Q 001709 713 TVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD---------QEGIAGGLCYCDSAGVN 780 (1022)
Q Consensus 713 ~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~---------~~~lr~~IGyV~Q~~~~ 780 (1022)
.+|+||||+|+ +++|+||||||||||+|+|+|++ +|++|+|.++|.++ ...+++.|+|++|+...
T Consensus 25 ~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~---~p~~G~i~~~g~~i~~~~~~~~~~~~~~~~i~~v~q~~~~ 101 (289)
T PRK13645 25 KALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLI---ISETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEY 101 (289)
T ss_pred ceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCC---CCCCceEEECCEEccccccccccHHHHhccEEEEEeCcch
Confidence 59999999999 99999999999999999999999 99999999997543 13456789999995432
Q ss_pred -CccccccccchHHHHhcccc----c---hHHHHHHHH-HhcCCc-cccCCCcCCch-HHHHHHHHH---------hhhc
Q 001709 781 -LQELTMEAARFKDEMWMGIR----D---LSRKTDLIV-LVHNLS-HKIPRYNYSSA-SGQQQPALS---------LLLN 840 (1022)
Q Consensus 781 -~~~lTV~~~~~~ENI~~g~~----~---~~~~v~~~L-~v~gL~-~~~~r~~~~LS-GqrQRvaIA---------LLLD 840 (1022)
++..|+ +||+.++.. . ..+++++++ .+ +|. +..++++.+|| |||||++|| ||||
T Consensus 102 ~~~~~tv-----~enl~~~~~~~~~~~~~~~~~~~~ll~~~-~L~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLD 175 (289)
T PRK13645 102 QLFQETI-----EKDIAFGPVNLGENKQEAYKKVPELLKLV-QLPEDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLD 175 (289)
T ss_pred hhhhhHH-----HHHHHHHHHHcCCCHHHHHHHHHHHHHHc-CCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEe
Confidence 444699 999987542 1 234566777 77 994 78899999999 999999999 9999
Q ss_pred cccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEe
Q 001709 841 EAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVIN 886 (1022)
Q Consensus 841 EPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~ 886 (1022)
|||++ +|...+..+...+.+..+....++++++
T Consensus 176 EPt~~-------------LD~~~~~~l~~~l~~~~~~~~~tiiiis 208 (289)
T PRK13645 176 EPTGG-------------LDPKGEEDFINLFERLNKEYKKRIIMVT 208 (289)
T ss_pred CCccc-------------CCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 99997 7777777766666444333334555555
No 188
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.93 E-value=2.1e-25 Score=258.91 Aligned_cols=169 Identities=12% Similarity=0.177 Sum_probs=128.1
Q ss_pred CCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc-h---h-hhcCceEEEcCCCCCC
Q 001709 710 DFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD-Q---E-GIAGGLCYCDSAGVNL 781 (1022)
Q Consensus 710 ~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~-~---~-~lr~~IGyV~Q~~~~~ 781 (1022)
+++++|+||||+|. +++|+||||||||||||+|+|++ +|++|+|.++|.++ . . ..++.||||||+...+
T Consensus 15 ~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~---~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~ 91 (501)
T PRK10762 15 PGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIY---TRDAGSILYLGKEVTFNGPKSSQEAGIGIIHQELNLI 91 (501)
T ss_pred CCeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCC---CCCCcEEEECCEECCCCCHHHHHhCCEEEEEcchhcc
Confidence 34679999999998 99999999999999999999999 99999999998654 1 1 2356799999954448
Q ss_pred ccccccccchHHHHhcccc--------c---hHHHHHHHH-HhcCCccccCCCcCCch-HHHHHHHHH---------hhh
Q 001709 782 QELTMEAARFKDEMWMGIR--------D---LSRKTDLIV-LVHNLSHKIPRYNYSSA-SGQQQPALS---------LLL 839 (1022)
Q Consensus 782 ~~lTV~~~~~~ENI~~g~~--------~---~~~~v~~~L-~v~gL~~~~~r~~~~LS-GqrQRvaIA---------LLL 839 (1022)
+.+|| +||+.++.. + ..+++.+++ .+ ||.+..++++.+|| |||||++|| |||
T Consensus 92 ~~~tv-----~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllL 165 (501)
T PRK10762 92 PQLTI-----AENIFLGREFVNRFGRIDWKKMYAEADKLLARL-NLRFSSDKLVGELSIGEQQMVEIAKVLSFESKVIIM 165 (501)
T ss_pred CCCcH-----HHHhhhccccccccCccCHHHHHHHHHHHHHHc-CCCCCccCchhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 88999 999987532 1 234677888 87 99999999999999 999999999 999
Q ss_pred ccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecC-CcccccCcccccc
Q 001709 840 NEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSC-PYVMPGAVSASLS 901 (1022)
Q Consensus 840 DEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~-~~V~~~~~~a~~l 901 (1022)
||||++ +|...+..+...+.+. .....++++++|. +.+...++..+.+
T Consensus 166 DEPt~~-------------LD~~~~~~l~~~l~~l-~~~~~tvii~sHd~~~~~~~~d~i~~l 214 (501)
T PRK10762 166 DEPTDA-------------LTDTETESLFRVIREL-KSQGRGIVYISHRLKEIFEICDDVTVF 214 (501)
T ss_pred eCCcCC-------------CCHHHHHHHHHHHHHH-HHCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 999997 5666666665544333 3333344444433 3333444544444
No 189
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.93 E-value=5.2e-25 Score=228.64 Aligned_cols=165 Identities=16% Similarity=0.206 Sum_probs=120.3
Q ss_pred CeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc-h-------hhhcCceEEEcCCCC
Q 001709 711 FTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD-Q-------EGIAGGLCYCDSAGV 779 (1022)
Q Consensus 711 ~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~-~-------~~lr~~IGyV~Q~~~ 779 (1022)
..+++++|||+++ +++|+|||||||||||++|+|++ +|++|+|.+++.++ . ...++.++|++|+ .
T Consensus 13 ~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~---~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~-~ 88 (218)
T cd03290 13 GLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEM---QTLEGKVHWSNKNESEPSFEATRSRNRYSVAYAAQK-P 88 (218)
T ss_pred CCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccC---CCCCCeEEECCcccccccccccchhhcceEEEEcCC-C
Confidence 3679999999998 99999999999999999999999 99999999997654 1 1245679999994 4
Q ss_pred CCccccccccchHHHHhccccchHHHHHHHH-HhcCCcc-----------ccCCCcCCch-HHHHHHHHH---------h
Q 001709 780 NLQELTMEAARFKDEMWMGIRDLSRKTDLIV-LVHNLSH-----------KIPRYNYSSA-SGQQQPALS---------L 837 (1022)
Q Consensus 780 ~~~~lTV~~~~~~ENI~~g~~~~~~~v~~~L-~v~gL~~-----------~~~r~~~~LS-GqrQRvaIA---------L 837 (1022)
.++..|+ +||+.++.....++..+++ .+ +|.+ ..++++..|| |||||++|| |
T Consensus 89 ~~~~~t~-----~~nl~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~il 162 (218)
T cd03290 89 WLLNATV-----EENITFGSPFNKQRYKAVTDAC-SLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTNIV 162 (218)
T ss_pred ccccccH-----HHHHhhcCcCCHHHHHHHHHHh-CcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCCCEE
Confidence 4336899 9999886432222334444 44 5433 2456789999 999999999 9
Q ss_pred hhccccCCChhHHHHHhhhhcccHHHHHHHHHH-HHHHHHhCCCeEEEEecCCcccccCccc
Q 001709 838 LLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDA-VMQAYQASPSTTEVINSCPYVMPGAVSA 898 (1022)
Q Consensus 838 LLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~-ll~~~~~t~~~~vVv~~~~~V~~~~~~a 898 (1022)
||||||++ +|...+..+... +++.+.....++++++|....+..++..
T Consensus 163 llDEPt~~-------------LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~~d~i 211 (218)
T cd03290 163 FLDDPFSA-------------LDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWI 211 (218)
T ss_pred EEeCCccc-------------cCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhhCCEE
Confidence 99999996 677766666653 4555554444566665444333334433
No 190
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.93 E-value=1.7e-25 Score=233.05 Aligned_cols=168 Identities=18% Similarity=0.137 Sum_probs=134.7
Q ss_pred CCCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc----hhhhcCceEEEcCCCCC-
Q 001709 709 SDFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD----QEGIAGGLCYCDSAGVN- 780 (1022)
Q Consensus 709 ~~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~----~~~lr~~IGyV~Q~~~~- 780 (1022)
-.++.+|++|||+++ +++||||||||||||||.|+|-+ .|++|++.+++.+. ..++.+..+.++|+...
T Consensus 11 ~~Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel---~p~~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~la 87 (259)
T COG4559 11 LAGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGEL---SPDSGEVTLNGVPLNSWPPEELARHRAVLPQNSSLA 87 (259)
T ss_pred eecceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCcc---CCCCCeEeeCCcChhhCCHHHHHHHhhhcccCcccc
Confidence 357889999999999 99999999999999999999999 99999999998654 66778888999997666
Q ss_pred CccccccccchHHHHhccccc---------hHHHHHHHH-HhcCCccccCCCcCCch-HHHHHHHHH-------------
Q 001709 781 LQELTMEAARFKDEMWMGIRD---------LSRKTDLIV-LVHNLSHKIPRYNYSSA-SGQQQPALS------------- 836 (1022)
Q Consensus 781 ~~~lTV~~~~~~ENI~~g~~~---------~~~~v~~~L-~v~gL~~~~~r~~~~LS-GqrQRvaIA------------- 836 (1022)
|| +|| .|-|.+|... +.+.++.+| .+ ++.+++.|...+|| |+||||.+|
T Consensus 88 Fp-Ftv-----~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~-d~~~la~R~y~~LSGGEqQRVqlARvLaQl~~~v~~~ 160 (259)
T COG4559 88 FP-FTV-----QEVVQMGRIPHRSGREPEEDERIAAQALAAT-DLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSG 160 (259)
T ss_pred cc-eEH-----HHHHHhcccccccCCCchhhHHHHHHHHHHc-ChhhhhccchhhcCchHHHHHHHHHHHHHccCCCCCC
Confidence 77 899 9999998752 334477888 87 99999999999999 999999999
Q ss_pred --hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCCcccccCcccccccCCCC
Q 001709 837 --LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCPYVMPGAVSASLSWGASG 906 (1022)
Q Consensus 837 --LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~~V~~~~~~a~~l~~~~~ 906 (1022)
|+||||||+ +|..+|...+..+.+...+- ..+++| +|+..-|...+||..
T Consensus 161 r~L~LDEPtsa-------------LDi~HQ~~tl~laR~la~~g-~~V~~V------LHDLNLAA~YaDriv 212 (259)
T COG4559 161 RWLFLDEPTSA-------------LDIAHQHHTLRLARQLAREG-GAVLAV------LHDLNLAAQYADRIV 212 (259)
T ss_pred ceEEecCCccc-------------cchHHHHHHHHHHHHHHhcC-CcEEEE------EccchHHHHhhheee
Confidence 899999997 67777777776665544444 333333 244444444444443
No 191
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.93 E-value=4.7e-25 Score=244.89 Aligned_cols=184 Identities=10% Similarity=0.106 Sum_probs=132.1
Q ss_pred cccccCceeEEEEecCCCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCC---ceEEEEccccc----
Q 001709 694 FIRPEGLSDVFIFCTSDFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTI---NSGNLDAEADD---- 763 (1022)
Q Consensus 694 ~i~~~~l~~~~~~~~~~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~Pt---sG~I~idg~~~---- 763 (1022)
.+.+++++..+- ...+...+|+||||+|+ +++|+|+||||||||+++|+|++ +|+ +|+|.++|.++
T Consensus 12 ~L~i~~l~~~~~-~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~---~p~~~~sG~I~~~G~~i~~~~ 87 (330)
T PRK09473 12 LLDVKDLRVTFS-TPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLL---AANGRIGGSATFNGREILNLP 87 (330)
T ss_pred eEEEeCeEEEEe-cCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCC---CCCCCCCeEEEECCEECCcCC
Confidence 466666664221 11123579999999999 99999999999999999999999 885 99999998764
Q ss_pred hhh---hc-CceEEEcCCCC--CCccccccccchHHHHhccc------c--chHHHHHHHH-HhcCCcc---ccCCCcCC
Q 001709 764 QEG---IA-GGLCYCDSAGV--NLQELTMEAARFKDEMWMGI------R--DLSRKTDLIV-LVHNLSH---KIPRYNYS 825 (1022)
Q Consensus 764 ~~~---lr-~~IGyV~Q~~~--~~~~lTV~~~~~~ENI~~g~------~--~~~~~v~~~L-~v~gL~~---~~~r~~~~ 825 (1022)
... +| +.|+||||+.. +++.+|+ .+|+.+.. . ...+++.+++ .+ ||.+ ..++++++
T Consensus 88 ~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v-----~~~i~~~~~~~~~~~~~~~~~~~~~~L~~v-gL~~~~~~~~~~p~~ 161 (330)
T PRK09473 88 EKELNKLRAEQISMIFQDPMTSLNPYMRV-----GEQLMEVLMLHKGMSKAEAFEESVRMLDAV-KMPEARKRMKMYPHE 161 (330)
T ss_pred HHHHHHHhcCCEEEEEcCchhhcCCCCCH-----HHHHHHHHHHhcCCCHHHHHHHHHHHHHHc-CCCChHHHhcCCccc
Confidence 122 23 47999999653 3677899 66654321 1 1235677788 77 8864 46789999
Q ss_pred ch-HHHHHHHHH---------hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCCcccccC
Q 001709 826 SA-SGQQQPALS---------LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCPYVMPGA 895 (1022)
Q Consensus 826 LS-GqrQRvaIA---------LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~~V~~~~ 895 (1022)
|| ||||||+|| |||||||++ +|...+..++..+.+..++..-++++++ |+.
T Consensus 162 LSgG~~QRv~IArAL~~~P~llilDEPts~-------------LD~~~~~~i~~lL~~l~~~~g~til~iT------Hdl 222 (330)
T PRK09473 162 FSGGMRQRVMIAMALLCRPKLLIADEPTTA-------------LDVTVQAQIMTLLNELKREFNTAIIMIT------HDL 222 (330)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCcc-------------CCHHHHHHHHHHHHHHHHHcCCEEEEEE------CCH
Confidence 99 999999999 999999997 7777777777766554443344566665 444
Q ss_pred cccccccCCCC
Q 001709 896 VSASLSWGASG 906 (1022)
Q Consensus 896 ~~a~~l~~~~~ 906 (1022)
+.+..++|++.
T Consensus 223 ~~~~~~~Dri~ 233 (330)
T PRK09473 223 GVVAGICDKVL 233 (330)
T ss_pred HHHHHhCCEEE
Confidence 44444444443
No 192
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.93 E-value=6.1e-26 Score=278.90 Aligned_cols=222 Identities=18% Similarity=0.196 Sum_probs=159.6
Q ss_pred hccCcCCCCCCc------cccccccCCCcc-hhhcccCCCCCCCCCCcccccCceeEEEEecCC-CeeEEEeeeEEEe--
Q 001709 654 LVGAPLRRPPNL------SISVFPSIDSET-IDCCMEHGSGSADDEKFIRPEGLSDVFIFCTSD-FTTVFKEVHFRTR-- 723 (1022)
Q Consensus 654 ~~~~Plk~l~~~------~~~vf~~ld~~~-~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~-~~~aLkdVSL~V~-- 723 (1022)
.++..+.-.|++ +.+||.++|.++ ++...+.....+.-+..|+ ++++.|.|... ..++|+|+||+|+
T Consensus 940 ~~~~~~s~~Pd~~ka~~Aa~~iF~i~dr~~~i~~~~~~~~~~~~~~G~I~---~~~V~F~YPsRP~~~Il~~l~l~i~~G 1016 (1228)
T KOG0055|consen 940 ALGQASSYAPDISKAKIAAGSIFEILDRKPTIDPDSTSGGKLPNVKGDIE---FRNVSFAYPTRPDVPVLNNLSLSIRAG 1016 (1228)
T ss_pred HHHHHHhhCcHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccceeEEE---EeeeEeeCCCCCCchhhcCCcEEecCC
Confidence 344455555666 888999999887 2221111111223344455 56666666543 4679999999999
Q ss_pred -EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc----hhhhcCceEEEcCCCCCCccccccccchHHHHhcc
Q 001709 724 -RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD----QEGIAGGLCYCDSAGVNLQELTMEAARFKDEMWMG 798 (1022)
Q Consensus 724 -iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~----~~~lr~~IGyV~Q~~~~~~~lTV~~~~~~ENI~~g 798 (1022)
.+||||||||||||.+-+|-++| +|++|.|.+||.++ ...+|++||.|.| ++.+++.|+ +|||.||
T Consensus 1017 qTvALVG~SGsGKSTvI~LLeRfY---dp~~G~V~IDg~dik~lnl~~LR~~i~lVsQ-EP~LF~~TI-----rENI~YG 1087 (1228)
T KOG0055|consen 1017 QTVALVGPSGSGKSTVISLLERFY---DPDAGKVKIDGVDIKDLNLKWLRKQIGLVSQ-EPVLFNGTI-----RENIAYG 1087 (1228)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhc---CCCCCeEEECCcccccCCHHHHHHhcceecc-CchhhcccH-----HHHHhcc
Confidence 99999999999999999999999 99999999997664 7889999999999 666666999 9999999
Q ss_pred ccc-----------hHHHHHHHH-HhcCCccccCCCcCCch-HHHHHHHHH---------hhhccccCCChhHHHHHhhh
Q 001709 799 IRD-----------LSRKTDLIV-LVHNLSHKIPRYNYSSA-SGQQQPALS---------LLLNEAKSLGIPWVLAITNK 856 (1022)
Q Consensus 799 ~~~-----------~~~~v~~~L-~v~gL~~~~~r~~~~LS-GqrQRvaIA---------LLLDEPTSad~~~v~~I~~~ 856 (1022)
... .....+.+. +.+|++...+++..+|| |||||+||| |||||+|||
T Consensus 1088 ~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilRnPkILLLDEATSA----------- 1156 (1228)
T KOG0055|consen 1088 SEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILRNPKILLLDEATSA----------- 1156 (1228)
T ss_pred CCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHcCCCeeeeeccchh-----------
Confidence 432 122344555 77788889999999999 999999999 999999998
Q ss_pred hcccHHHHHHHHHHHHHHHHhCCCeEEEEecCCcccccCccccccc
Q 001709 857 FSVSAHQQRAAIDAVMQAYQASPSTTEVINSCPYVMPGAVSASLSW 902 (1022)
Q Consensus 857 ~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~~V~~~~~~a~~l~ 902 (1022)
||....+...+ +++.... ..|++||.|-.-.+..+|--.++.
T Consensus 1157 --LDseSErvVQe-ALd~a~~-gRT~IvIAHRLSTIqnaD~I~Vi~ 1198 (1228)
T KOG0055|consen 1157 --LDSESERVVQE-ALDRAME-GRTTIVIAHRLSTIQNADVIAVLK 1198 (1228)
T ss_pred --hhhhhHHHHHH-HHHHhhc-CCcEEEEecchhhhhcCCEEEEEE
Confidence 56554444443 3344333 346666654444444444444433
No 193
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.93 E-value=2.6e-25 Score=258.39 Aligned_cols=155 Identities=16% Similarity=0.212 Sum_probs=122.2
Q ss_pred CCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc----hh-hhcCceEEEcCCCCCC
Q 001709 710 DFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD----QE-GIAGGLCYCDSAGVNL 781 (1022)
Q Consensus 710 ~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~----~~-~lr~~IGyV~Q~~~~~ 781 (1022)
+++++|+||||+|+ +++|+||||||||||+|+|+|++ +|++|+|.++|.++ .. ..+++||||||+...+
T Consensus 16 ~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~---~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~ 92 (510)
T PRK09700 16 GPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIH---EPTKGTITINNINYNKLDHKLAAQLGIGIIYQELSVI 92 (510)
T ss_pred CCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCc---CCCccEEEECCEECCCCCHHHHHHCCeEEEeeccccc
Confidence 34679999999999 99999999999999999999999 99999999998654 11 2346799999954447
Q ss_pred ccccccccchHHHHhcccc--------------chHHHHHHHH-HhcCCccccCCCcCCch-HHHHHHHHH---------
Q 001709 782 QELTMEAARFKDEMWMGIR--------------DLSRKTDLIV-LVHNLSHKIPRYNYSSA-SGQQQPALS--------- 836 (1022)
Q Consensus 782 ~~lTV~~~~~~ENI~~g~~--------------~~~~~v~~~L-~v~gL~~~~~r~~~~LS-GqrQRvaIA--------- 836 (1022)
+.+|| +||+.++.. ...+++.+++ .+ ||.+..++++.+|| ||||||+||
T Consensus 93 ~~~tv-----~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-gl~~~~~~~~~~LSgG~~qrv~ia~al~~~p~l 166 (510)
T PRK09700 93 DELTV-----LENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRV-GLKVDLDEKVANLSISHKQMLEIAKTLMLDAKV 166 (510)
T ss_pred CCCcH-----HHHhhhccccccccccccccCHHHHHHHHHHHHHHc-CCCCCcccchhhCCHHHHHHHHHHHHHhcCCCE
Confidence 88999 999987531 1234677788 77 99989999999999 999999999
Q ss_pred hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEec
Q 001709 837 LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINS 887 (1022)
Q Consensus 837 LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~ 887 (1022)
|||||||++ +|...+..+...+.+. .....++++++|
T Consensus 167 llLDEPt~~-------------LD~~~~~~l~~~l~~l-~~~g~tiiivsH 203 (510)
T PRK09700 167 IIMDEPTSS-------------LTNKEVDYLFLIMNQL-RKEGTAIVYISH 203 (510)
T ss_pred EEEeCCCCC-------------CCHHHHHHHHHHHHHH-HhCCCEEEEEeC
Confidence 999999997 5666666655554433 333344555543
No 194
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.93 E-value=3.6e-25 Score=237.73 Aligned_cols=153 Identities=14% Similarity=0.126 Sum_probs=119.9
Q ss_pred eeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc----hhhhcCceEEEcCCCC--CCc
Q 001709 712 TTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD----QEGIAGGLCYCDSAGV--NLQ 782 (1022)
Q Consensus 712 ~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~----~~~lr~~IGyV~Q~~~--~~~ 782 (1022)
+++|+||||+|+ +++|+||||||||||||+|+|++ +|++|+|.+++.++ ....++.|+||+|+.. .++
T Consensus 26 ~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~---~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 102 (267)
T PRK15112 26 VEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMI---EPTSGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNP 102 (267)
T ss_pred cceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCC---CCCCCEEEECCEECCCCchhhHhccEEEEecCchhhcCc
Confidence 479999999998 99999999999999999999999 99999999998654 2233467999999543 256
Q ss_pred cccccccchHHHHhcccc--------chHHHHHHHH-HhcCCc-cccCCCcCCch-HHHHHHHHH---------hhhccc
Q 001709 783 ELTMEAARFKDEMWMGIR--------DLSRKTDLIV-LVHNLS-HKIPRYNYSSA-SGQQQPALS---------LLLNEA 842 (1022)
Q Consensus 783 ~lTV~~~~~~ENI~~g~~--------~~~~~v~~~L-~v~gL~-~~~~r~~~~LS-GqrQRvaIA---------LLLDEP 842 (1022)
.+|+ .+|+.+... ...+++.+++ .+ ||. +..++++.+|| |||||++|| ||||||
T Consensus 103 ~~tv-----~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP 176 (267)
T PRK15112 103 RQRI-----SQILDFPLRLNTDLEPEQREKQIIETLRQV-GLLPDHASYYPHMLAPGQKQRLGLARALILRPKVIIADEA 176 (267)
T ss_pred chhH-----HHHHHHHHHhccCCCHHHHHHHHHHHHHHc-CCChHHHhcCchhcCHHHHHHHHHHHHHHhCCCEEEEcCC
Confidence 6788 888875322 1234577788 77 994 67889999999 999999999 999999
Q ss_pred cCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEe
Q 001709 843 KSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVIN 886 (1022)
Q Consensus 843 TSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~ 886 (1022)
|++ +|...+..+...+.+..+....++++++
T Consensus 177 t~~-------------LD~~~~~~l~~~l~~~~~~~g~tviivs 207 (267)
T PRK15112 177 LAS-------------LDMSMRSQLINLMLELQEKQGISYIYVT 207 (267)
T ss_pred ccc-------------CCHHHHHHHHHHHHHHHHHcCcEEEEEe
Confidence 997 7777777766666544333334556665
No 195
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=3.4e-25 Score=245.64 Aligned_cols=182 Identities=13% Similarity=0.103 Sum_probs=132.3
Q ss_pred ccccCceeEEEEecC--CCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCC----CCceEEEEccccc--
Q 001709 695 IRPEGLSDVFIFCTS--DFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVR----TINSGNLDAEADD-- 763 (1022)
Q Consensus 695 i~~~~l~~~~~~~~~--~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~----PtsG~I~idg~~~-- 763 (1022)
+++++++. .|.. +...+|+||||+|. +++|+|+||||||||+|+|+|++ + |++|+|+++|.++
T Consensus 4 L~v~~l~~---~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~---~~~~~~~~G~i~~~g~~i~~ 77 (330)
T PRK15093 4 LDIRNLTI---EFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVT---KDNWRVTADRMRFDDIDLLR 77 (330)
T ss_pred EEEeeeEE---EEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccC---CCCCCCcceEEEECCEECCc
Confidence 44455554 3322 34579999999998 99999999999999999999998 6 5899999998654
Q ss_pred --hhh---h-cCceEEEcCCCCC--CccccccccchHHHHhcccc-------------chHHHHHHHH-HhcCCcc---c
Q 001709 764 --QEG---I-AGGLCYCDSAGVN--LQELTMEAARFKDEMWMGIR-------------DLSRKTDLIV-LVHNLSH---K 818 (1022)
Q Consensus 764 --~~~---l-r~~IGyV~Q~~~~--~~~lTV~~~~~~ENI~~g~~-------------~~~~~v~~~L-~v~gL~~---~ 818 (1022)
... + ++.|+||||+... .+.+|| .+|+.+... ...+++.+++ .+ ||.+ .
T Consensus 78 ~~~~~~~~~~~~~i~~v~Q~~~~~l~p~~tv-----~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~-gL~~~~~~ 151 (330)
T PRK15093 78 LSPRERRKLVGHNVSMIFQEPQSCLDPSERV-----GRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRV-GIKDHKDA 151 (330)
T ss_pred CCHHHHHHHhCCCEEEEecCcchhcCccccH-----HHHHHHHHHhhhccccccccHHHHHHHHHHHHHHC-CCCChHHH
Confidence 112 1 3579999996443 567899 887754210 1235677888 88 9974 4
Q ss_pred cCCCcCCch-HHHHHHHHH---------hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecC
Q 001709 819 IPRYNYSSA-SGQQQPALS---------LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSC 888 (1022)
Q Consensus 819 ~~r~~~~LS-GqrQRvaIA---------LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~ 888 (1022)
.++++.+|| ||||||+|| |||||||++ +|...+..++..+.+..++...++++++
T Consensus 152 ~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~-------------LD~~~~~~i~~lL~~l~~~~g~tii~it-- 216 (330)
T PRK15093 152 MRSFPYELTEGECQKVMIAIALANQPRLLIADEPTNA-------------MEPTTQAQIFRLLTRLNQNNNTTILLIS-- 216 (330)
T ss_pred HhCCchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCc-------------CCHHHHHHHHHHHHHHHHhcCCEEEEEE--
Confidence 689999999 999999999 999999997 7777777777766554433344666665
Q ss_pred CcccccCcccccccCCCCC
Q 001709 889 PYVMPGAVSASLSWGASGG 907 (1022)
Q Consensus 889 ~~V~~~~~~a~~l~~~~~~ 907 (1022)
|+...+..+++++.+
T Consensus 217 ----Hdl~~v~~~~dri~v 231 (330)
T PRK15093 217 ----HDLQMLSQWADKINV 231 (330)
T ss_pred ----CCHHHHHHhCCEEEE
Confidence 444444444554443
No 196
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.93 E-value=1.8e-26 Score=238.39 Aligned_cols=139 Identities=24% Similarity=0.306 Sum_probs=117.7
Q ss_pred cccCceeEEEEecCCCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc-----hhhh
Q 001709 696 RPEGLSDVFIFCTSDFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD-----QEGI 767 (1022)
Q Consensus 696 ~~~~l~~~~~~~~~~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~-----~~~l 767 (1022)
..++|.+. ++.++++++|||+|+ +|+|+|||||||||.+.++.||. +|++|+|.+|+.++ ....
T Consensus 6 ~a~~l~K~-----y~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv---~~d~G~i~ld~~diT~lPm~~RA 77 (243)
T COG1137 6 VAENLAKS-----YKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLV---RPDSGKILLDDEDITKLPMHKRA 77 (243)
T ss_pred EehhhhHh-----hCCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEE---ecCCceEEECCcccccCChHHHh
Confidence 34556653 367899999999999 99999999999999999999999 99999999997665 4566
Q ss_pred cCceEEEcCCCCCCccccccccchHHHHhcccc----c-----hHHHHHHHH-HhcCCccccCCCcCCch-HHHHHHHHH
Q 001709 768 AGGLCYCDSAGVNLQELTMEAARFKDEMWMGIR----D-----LSRKTDLIV-LVHNLSHKIPRYNYSSA-SGQQQPALS 836 (1022)
Q Consensus 768 r~~IGyV~Q~~~~~~~lTV~~~~~~ENI~~g~~----~-----~~~~v~~~L-~v~gL~~~~~r~~~~LS-GqrQRvaIA 836 (1022)
|.+|||+||+...|-.+|| .|||..-++ + .+.+++.+| .+ .+.|..+++..+|| |+|.|+.||
T Consensus 78 rlGigYLpQE~SIFr~LtV-----~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef-~i~hlr~~~a~sLSGGERRR~EIA 151 (243)
T COG1137 78 RLGIGYLPQEASIFRKLTV-----EDNIMAVLEIREKDLKKAERKEELDALLEEF-HITHLRDSKAYSLSGGERRRVEIA 151 (243)
T ss_pred hcCcccccccchHhhcCcH-----HHHHHHHHhhhhcchhHHHHHHHHHHHHHHh-chHHHhcCcccccccchHHHHHHH
Confidence 7899999994444999999 999976554 1 123466888 88 99999999999999 999999999
Q ss_pred ---------hhhccccCCChh
Q 001709 837 ---------LLLNEAKSLGIP 848 (1022)
Q Consensus 837 ---------LLLDEPTSad~~ 848 (1022)
+||||||++-+|
T Consensus 152 RaLa~~P~fiLLDEPFAGVDP 172 (243)
T COG1137 152 RALAANPKFILLDEPFAGVDP 172 (243)
T ss_pred HHHhcCCCEEEecCCccCCCc
Confidence 999999997333
No 197
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.93 E-value=3.7e-25 Score=257.62 Aligned_cols=179 Identities=17% Similarity=0.167 Sum_probs=132.9
Q ss_pred ccccCceeEEEEecCCCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc----hhh-
Q 001709 695 IRPEGLSDVFIFCTSDFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD----QEG- 766 (1022)
Q Consensus 695 i~~~~l~~~~~~~~~~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~----~~~- 766 (1022)
+.+++++. .+ +.+++|+||||+|+ +++|+||||||||||||+|+|++ +|++|+|.++|.++ ...
T Consensus 12 l~~~~l~~---~~--~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~---~p~~G~i~~~g~~~~~~~~~~~ 83 (510)
T PRK15439 12 LCARSISK---QY--SGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIV---PPDSGTLEIGGNPCARLTPAKA 83 (510)
T ss_pred EEEEeEEE---Ee--CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC---CCCceEEEECCEECCCCCHHHH
Confidence 55455543 33 34679999999999 99999999999999999999999 99999999998654 122
Q ss_pred hcCceEEEcCCCCCCccccccccchHHHHhccccc---hHHHHHHHH-HhcCCccccCCCcCCch-HHHHHHHHH-----
Q 001709 767 IAGGLCYCDSAGVNLQELTMEAARFKDEMWMGIRD---LSRKTDLIV-LVHNLSHKIPRYNYSSA-SGQQQPALS----- 836 (1022)
Q Consensus 767 lr~~IGyV~Q~~~~~~~lTV~~~~~~ENI~~g~~~---~~~~v~~~L-~v~gL~~~~~r~~~~LS-GqrQRvaIA----- 836 (1022)
.++.||||+|+...++.+|| +||+.++... ..+++.+++ .+ ||.+..++++.+|| ||||||+||
T Consensus 84 ~~~~i~~v~q~~~~~~~~tv-----~e~l~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~LSgG~~qrv~la~aL~~ 157 (510)
T PRK15439 84 HQLGIYLVPQEPLLFPNLSV-----KENILFGLPKRQASMQKMKQLLAAL-GCQLDLDSSAGSLEVADRQIVEILRGLMR 157 (510)
T ss_pred HhCCEEEEeccCccCCCCcH-----HHHhhcccccchHHHHHHHHHHHHc-CCCccccCChhhCCHHHHHHHHHHHHHHc
Confidence 23579999995445888999 9999987542 346678888 87 99999999999999 999999999
Q ss_pred ----hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecC-CcccccCcccccc
Q 001709 837 ----LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSC-PYVMPGAVSASLS 901 (1022)
Q Consensus 837 ----LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~-~~V~~~~~~a~~l 901 (1022)
|||||||++ +|...+..+...+.+ +.....++++++|. +.+...++..+++
T Consensus 158 ~p~lllLDEPt~~-------------LD~~~~~~l~~~l~~-~~~~g~tiiivtHd~~~~~~~~d~i~~l 213 (510)
T PRK15439 158 DSRILILDEPTAS-------------LTPAETERLFSRIRE-LLAQGVGIVFISHKLPEIRQLADRISVM 213 (510)
T ss_pred CCCEEEEECCCCC-------------CCHHHHHHHHHHHHH-HHHCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 999999997 555555555554433 33333344455433 2233334444443
No 198
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=3e-25 Score=257.87 Aligned_cols=164 Identities=16% Similarity=0.224 Sum_probs=125.4
Q ss_pred ccccCceeEEEEecCCCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCC--CceEEEEccccc-h---h
Q 001709 695 IRPEGLSDVFIFCTSDFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRT--INSGNLDAEADD-Q---E 765 (1022)
Q Consensus 695 i~~~~l~~~~~~~~~~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~P--tsG~I~idg~~~-~---~ 765 (1022)
+++++++. .+ +++++|+||||+|+ +++|+||||||||||+|+|+|++ +| ++|+|.++|.++ . .
T Consensus 6 l~~~nl~~---~~--~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~---~~~~~~G~i~~~g~~~~~~~~~ 77 (506)
T PRK13549 6 LEMKNITK---TF--GGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVY---PHGTYEGEIIFEGEELQASNIR 77 (506)
T ss_pred EEEeeeEE---Ee--CCeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCC---CCCCCCeEEEECCEECCCCCHH
Confidence 45445543 33 34679999999998 99999999999999999999999 86 899999998664 1 1
Q ss_pred -hhcCceEEEcCCCCCCccccccccchHHHHhcccc-------c---hHHHHHHHH-HhcCCccccCCCcCCch-HHHHH
Q 001709 766 -GIAGGLCYCDSAGVNLQELTMEAARFKDEMWMGIR-------D---LSRKTDLIV-LVHNLSHKIPRYNYSSA-SGQQQ 832 (1022)
Q Consensus 766 -~lr~~IGyV~Q~~~~~~~lTV~~~~~~ENI~~g~~-------~---~~~~v~~~L-~v~gL~~~~~r~~~~LS-GqrQR 832 (1022)
..++.||||||+...++.+|+ +||+.++.. . ..+++++++ .+ ||.+..++++.+|| |||||
T Consensus 78 ~~~~~~i~~v~q~~~~~~~~tv-----~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~LSgGqkqr 151 (506)
T PRK13549 78 DTERAGIAIIHQELALVKELSV-----LENIFLGNEITPGGIMDYDAMYLRAQKLLAQL-KLDINPATPVGNLGLGQQQL 151 (506)
T ss_pred HHHHCCeEEEEeccccCCCCcH-----HHHhhhcccccccCCcCHHHHHHHHHHHHHHc-CCCCCcccchhhCCHHHHHH
Confidence 235779999995444788999 999987642 1 234677888 87 99988999999999 99999
Q ss_pred HHHH---------hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEe
Q 001709 833 PALS---------LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVIN 886 (1022)
Q Consensus 833 vaIA---------LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~ 886 (1022)
++|| |||||||++ +|...+..+...+.+. .....++++++
T Consensus 152 v~la~al~~~p~lllLDEPt~~-------------LD~~~~~~l~~~l~~l-~~~~~tvi~~t 200 (506)
T PRK13549 152 VEIAKALNKQARLLILDEPTAS-------------LTESETAVLLDIIRDL-KAHGIACIYIS 200 (506)
T ss_pred HHHHHHHhcCCCEEEEeCCCCC-------------CCHHHHHHHHHHHHHH-HHCCCEEEEEe
Confidence 9999 999999997 5555555555544333 33333444444
No 199
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=4.2e-25 Score=232.64 Aligned_cols=167 Identities=18% Similarity=0.183 Sum_probs=129.2
Q ss_pred eEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc--hhhhcCceEEEcCCCCCCcccccc
Q 001709 713 TVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD--QEGIAGGLCYCDSAGVNLQELTME 787 (1022)
Q Consensus 713 ~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~--~~~lr~~IGyV~Q~~~~~~~lTV~ 787 (1022)
++|+||||+|. +++|+||||||||||+++|+|++ +|++|+|+++|.+. ....++.++|++|+...|+.+|+
T Consensus 13 ~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~---~p~~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~- 88 (235)
T cd03299 13 FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFI---KPDSGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTV- 88 (235)
T ss_pred ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCc---CCCceEEEECCEEcCcCChhHcCEEEEeecCccCCCccH-
Confidence 38999999998 99999999999999999999999 99999999998665 12236789999995444778999
Q ss_pred ccchHHHHhccccc-------hHHHHHHHH-HhcCCccccCCCcCCch-HHHHHHHHH---------hhhccccCCChhH
Q 001709 788 AARFKDEMWMGIRD-------LSRKTDLIV-LVHNLSHKIPRYNYSSA-SGQQQPALS---------LLLNEAKSLGIPW 849 (1022)
Q Consensus 788 ~~~~~ENI~~g~~~-------~~~~v~~~L-~v~gL~~~~~r~~~~LS-GqrQRvaIA---------LLLDEPTSad~~~ 849 (1022)
.||+.++... ..+.+.+++ .+ ||.+..++++.+|| |||||++|| |||||||++
T Consensus 89 ----~e~l~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~g---- 159 (235)
T cd03299 89 ----YKNIAYGLKKRKVDKKEIERKVLEIAEML-GIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSA---- 159 (235)
T ss_pred ----HHHHHHHHHHcCCCHHHHHHHHHHHHHHc-CChhHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEECCCccc----
Confidence 9999875421 234567778 77 99999999999999 999999999 999999996
Q ss_pred HHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCCc-ccccCcccccc
Q 001709 850 VLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCPY-VMPGAVSASLS 901 (1022)
Q Consensus 850 v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~~-V~~~~~~a~~l 901 (1022)
+|...+..+...+.+.....+.++++++|... +...++..+.+
T Consensus 160 ---------LD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l 203 (235)
T cd03299 160 ---------LDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIM 203 (235)
T ss_pred ---------CCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEE
Confidence 77777777776665543433446666653332 33334444433
No 200
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.92 E-value=4.2e-25 Score=234.18 Aligned_cols=165 Identities=15% Similarity=0.236 Sum_probs=123.2
Q ss_pred ccccCceeEEEEecCCCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCC--CCceEEEEccccc------
Q 001709 695 IRPEGLSDVFIFCTSDFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVR--TINSGNLDAEADD------ 763 (1022)
Q Consensus 695 i~~~~l~~~~~~~~~~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~--PtsG~I~idg~~~------ 763 (1022)
+++++++ +.+ +.+++|++|||+|+ +++|+||||||||||+|+|+|++..++ |++|+|.++|.++
T Consensus 7 l~~~~l~---~~~--~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 81 (253)
T PRK14242 7 MEARGLS---FFY--GDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVD 81 (253)
T ss_pred EEEeeeE---EEE--CCeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccC
Confidence 5544444 333 24579999999999 999999999999999999999971112 5899999998654
Q ss_pred hhhhcCceEEEcCCCCCCccccccccchHHHHhcccc-----c---hHHHHHHHH-HhcCCc----cccCCCcCCch-HH
Q 001709 764 QEGIAGGLCYCDSAGVNLQELTMEAARFKDEMWMGIR-----D---LSRKTDLIV-LVHNLS----HKIPRYNYSSA-SG 829 (1022)
Q Consensus 764 ~~~lr~~IGyV~Q~~~~~~~lTV~~~~~~ENI~~g~~-----~---~~~~v~~~L-~v~gL~----~~~~r~~~~LS-Gq 829 (1022)
...+++.|+|++|+...|+ .|+ +||+.++.. . ..+++++++ .+ ++. +..++++.+|| ||
T Consensus 82 ~~~~~~~i~~v~q~~~~~~-~tv-----~enl~~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~~~~~LSgGq 154 (253)
T PRK14242 82 VVELRRRVGMVFQKPNPFP-KSI-----FENVAYGLRVNGVKDKAYLAERVERSLRHA-ALWDEVKDRLHESALGLSGGQ 154 (253)
T ss_pred HHHHhhcEEEEecCCCCCc-CcH-----HHHHHHHHHHcCCCCHHHHHHHHHHHHHHc-CCchhhhHHhhCCcccCCHHH
Confidence 1245678999999544466 699 999987532 1 234566777 66 874 35688999999 99
Q ss_pred HHHHHHH---------hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEe
Q 001709 830 QQQPALS---------LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVIN 886 (1022)
Q Consensus 830 rQRvaIA---------LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~ 886 (1022)
|||++|| |||||||++ +|...+..+...+.+. .. ..++++++
T Consensus 155 ~qrv~laral~~~p~llllDEPt~~-------------LD~~~~~~l~~~l~~~-~~-~~tvii~t 205 (253)
T PRK14242 155 QQRLCIARALAVEPEVLLMDEPASA-------------LDPIATQKIEELIHEL-KA-RYTIIIVT 205 (253)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCccc-------------CCHHHHHHHHHHHHHH-hc-CCeEEEEE
Confidence 9999999 999999997 7777777776666543 33 34555555
No 201
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.92 E-value=4.9e-25 Score=232.39 Aligned_cols=170 Identities=19% Similarity=0.212 Sum_probs=132.4
Q ss_pred CeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc--hhhhcCceEEEcCCCCCCcccc
Q 001709 711 FTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD--QEGIAGGLCYCDSAGVNLQELT 785 (1022)
Q Consensus 711 ~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~--~~~lr~~IGyV~Q~~~~~~~lT 785 (1022)
.+++|+++||++. +++|+||||||||||+++|+|++ +|++|+|.++|.++ ....++.++|++|+...|+.+|
T Consensus 12 ~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~---~~~~G~i~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t 88 (237)
T TIGR00968 12 SFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLE---QPDSGRIRLNGQDATRVHARDRKIGFVFQHYALFKHLT 88 (237)
T ss_pred CeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC---CCCceEEEECCEEcCcCChhhcCEEEEecChhhccCCc
Confidence 4679999999998 99999999999999999999999 99999999998665 2234678999999444477789
Q ss_pred ccccchHHHHhcccc-------chHHHHHHHH-HhcCCccccCCCcCCch-HHHHHHHHH---------hhhccccCCCh
Q 001709 786 MEAARFKDEMWMGIR-------DLSRKTDLIV-LVHNLSHKIPRYNYSSA-SGQQQPALS---------LLLNEAKSLGI 847 (1022)
Q Consensus 786 V~~~~~~ENI~~g~~-------~~~~~v~~~L-~v~gL~~~~~r~~~~LS-GqrQRvaIA---------LLLDEPTSad~ 847 (1022)
+ .||+.+... ...+.+++++ .+ ++.+..++.+.+|| ||+||++|| +||||||++
T Consensus 89 ~-----~enl~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~~-- 160 (237)
T TIGR00968 89 V-----RDNIAFGLEIRKHPKAKIKARVEELLELV-QLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGA-- 160 (237)
T ss_pred H-----HHHHHhHHHhcCCCHHHHHHHHHHHHHHc-CCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccc--
Confidence 9 999987542 1234567788 77 99888999999999 999999999 999999996
Q ss_pred hHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCCc-ccccCccccccc
Q 001709 848 PWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCPY-VMPGAVSASLSW 902 (1022)
Q Consensus 848 ~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~~-V~~~~~~a~~l~ 902 (1022)
+|...+..+...+.+..+..+.++++++|... +...++..+.+.
T Consensus 161 -----------LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~ 205 (237)
T TIGR00968 161 -----------LDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMS 205 (237)
T ss_pred -----------CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEE
Confidence 77778888777665543332456666654433 334444444443
No 202
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.92 E-value=7.1e-25 Score=236.02 Aligned_cols=168 Identities=17% Similarity=0.130 Sum_probs=125.8
Q ss_pred CeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc-hhhhcCceEEEcCCCCC--Cccc
Q 001709 711 FTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD-QEGIAGGLCYCDSAGVN--LQEL 784 (1022)
Q Consensus 711 ~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~-~~~lr~~IGyV~Q~~~~--~~~l 784 (1022)
++++|+||||+|+ +++|+||||||||||+|+|+|++ +|++|+|.++|.++ ....++.++|++|+... ....
T Consensus 19 ~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~---~p~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~~~~ 95 (272)
T PRK15056 19 GHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFV---RLASGKISILGQPTRQALQKNLVAYVPQSEEVDWSFPV 95 (272)
T ss_pred CcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC---CCCceEEEECCEEhHHhhccceEEEeccccccccCCCc
Confidence 4679999999998 99999999999999999999999 99999999998776 22223469999995332 1234
Q ss_pred cccccchHHHHhcccc-----------chHHHHHHHH-HhcCCccccCCCcCCch-HHHHHHHHH---------hhhccc
Q 001709 785 TMEAARFKDEMWMGIR-----------DLSRKTDLIV-LVHNLSHKIPRYNYSSA-SGQQQPALS---------LLLNEA 842 (1022)
Q Consensus 785 TV~~~~~~ENI~~g~~-----------~~~~~v~~~L-~v~gL~~~~~r~~~~LS-GqrQRvaIA---------LLLDEP 842 (1022)
++ .+|+.++.. ...+++++++ .+ ||.+..++++.+|| |||||++|| ||||||
T Consensus 96 ~~-----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-gl~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEP 169 (272)
T PRK15056 96 LV-----EDVVMMGRYGHMGWLRRAKKRDRQIVTAALARV-DMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEP 169 (272)
T ss_pred ch-----hhheecccccccccccCCCHHHHHHHHHHHHHc-CChhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 67 888765321 1234567788 77 99999999999999 999999999 999999
Q ss_pred cCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCC-cccccCcccccc
Q 001709 843 KSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCP-YVMPGAVSASLS 901 (1022)
Q Consensus 843 TSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~-~V~~~~~~a~~l 901 (1022)
|++ +|...+..+...+. .+.....++++++|.. .+...++..+++
T Consensus 170 t~~-------------LD~~~~~~l~~~L~-~~~~~g~tviivsH~~~~~~~~~d~v~~~ 215 (272)
T PRK15056 170 FTG-------------VDVKTEARIISLLR-ELRDEGKTMLVSTHNLGSVTEFCDYTVMV 215 (272)
T ss_pred Ccc-------------CCHHHHHHHHHHHH-HHHhCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 997 77777777666554 4444444666665333 344445554444
No 203
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.92 E-value=4.4e-25 Score=230.10 Aligned_cols=182 Identities=14% Similarity=0.191 Sum_probs=130.4
Q ss_pred CcccccCceeEEEEecCC-CeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc----h
Q 001709 693 KFIRPEGLSDVFIFCTSD-FTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD----Q 764 (1022)
Q Consensus 693 ~~i~~~~l~~~~~~~~~~-~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~----~ 764 (1022)
..+++++++ +.+... ..++|++|||+|+ +++|+||||||||||+++|+|++ +|++|+|.++|.++ .
T Consensus 10 ~~l~~~~l~---~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~---~~~~G~i~~~g~~~~~~~~ 83 (226)
T cd03248 10 GIVKFQNVT---FAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFY---QPQGGQVLLDGKPISQYEH 83 (226)
T ss_pred ceEEEEEEE---EEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCc---CCCCcEEEECCCchHHcCH
Confidence 345544444 444322 2469999999999 99999999999999999999999 99999999998664 2
Q ss_pred hhhcCceEEEcCCCCCCccccccccchHHHHhccccc--h---HH-----HHHHHH-Hhc-CCccccCCCcCCch-HHHH
Q 001709 765 EGIAGGLCYCDSAGVNLQELTMEAARFKDEMWMGIRD--L---SR-----KTDLIV-LVH-NLSHKIPRYNYSSA-SGQQ 831 (1022)
Q Consensus 765 ~~lr~~IGyV~Q~~~~~~~lTV~~~~~~ENI~~g~~~--~---~~-----~v~~~L-~v~-gL~~~~~r~~~~LS-GqrQ 831 (1022)
...++.|+|++|+...|+ .|+ +||+.++... . .+ .+.+++ .+. |+.+..++++.+|| ||||
T Consensus 84 ~~~~~~i~~~~q~~~l~~-~tv-----~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~q 157 (226)
T cd03248 84 KYLHSKVSLVGQEPVLFA-RSL-----QDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQ 157 (226)
T ss_pred HHHHhhEEEEecccHHHh-hhH-----HHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHH
Confidence 345678999999433354 799 9999876531 1 11 133445 332 67788899999999 9999
Q ss_pred HHHHH---------hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCCcccccCcccccc
Q 001709 832 QPALS---------LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCPYVMPGAVSASLS 901 (1022)
Q Consensus 832 RvaIA---------LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~~V~~~~~~a~~l 901 (1022)
|++|| |||||||++ +|...+..+...+.+ +.. ..++++++|....+..++..+.+
T Consensus 158 rv~laral~~~p~llllDEPt~~-------------LD~~~~~~l~~~l~~-~~~-~~tii~~sh~~~~~~~~d~i~~l 221 (226)
T cd03248 158 RVAIARALIRNPQVLILDEATSA-------------LDAESEQQVQQALYD-WPE-RRTVLVIAHRLSTVERADQILVL 221 (226)
T ss_pred HHHHHHHHhcCCCEEEEeCCccc-------------CCHHHHHHHHHHHHH-HcC-CCEEEEEECCHHHHHhCCEEEEe
Confidence 99999 999999996 777777776666654 333 34566665443333334444433
No 204
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=6e-25 Score=227.06 Aligned_cols=165 Identities=12% Similarity=0.161 Sum_probs=123.0
Q ss_pred eEEEEecC--CCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCC---CCceEEEEccccc---hhhhcCc
Q 001709 702 DVFIFCTS--DFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVR---TINSGNLDAEADD---QEGIAGG 770 (1022)
Q Consensus 702 ~~~~~~~~--~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~---PtsG~I~idg~~~---~~~lr~~ 770 (1022)
++.+.|.. +++++|+++||+|+ +++|+||||||||||+++|+|++ + |++|+|.+++.++ ....++.
T Consensus 8 ~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~---~~~~~~~G~i~i~g~~~~~~~~~~~~~ 84 (202)
T cd03233 8 NISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRT---EGNVSVEGDIHYNGIPYKEFAEKYPGE 84 (202)
T ss_pred ccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccC---CCCCCcceEEEECCEECccchhhhcce
Confidence 33344443 35689999999999 99999999999999999999999 8 8999999998765 2345778
Q ss_pred eEEEcCCCCCCccccccccchHHHHhccccchHHHHHHHHHhcCCccccCCCcCCch-HHHHHHHHH---------hhhc
Q 001709 771 LCYCDSAGVNLQELTMEAARFKDEMWMGIRDLSRKTDLIVLVHNLSHKIPRYNYSSA-SGQQQPALS---------LLLN 840 (1022)
Q Consensus 771 IGyV~Q~~~~~~~lTV~~~~~~ENI~~g~~~~~~~v~~~L~v~gL~~~~~r~~~~LS-GqrQRvaIA---------LLLD 840 (1022)
++|++|+...++.+|| +||+.++.. . . .++++.+|| |||||++|| ||||
T Consensus 85 i~~~~q~~~~~~~~tv-----~~~l~~~~~-----------~-~----~~~~~~~LS~Ge~qrl~laral~~~p~llllD 143 (202)
T cd03233 85 IIYVSEEDVHFPTLTV-----RETLDFALR-----------C-K----GNEFVRGISGGERKRVSIAEALVSRASVLCWD 143 (202)
T ss_pred EEEEecccccCCCCcH-----HHHHhhhhh-----------h-c----cccchhhCCHHHHHHHHHHHHHhhCCCEEEEc
Confidence 9999995444788999 999976531 1 1 567889999 999999999 9999
Q ss_pred cccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEE-ecC-CcccccCcccccccC
Q 001709 841 EAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVI-NSC-PYVMPGAVSASLSWG 903 (1022)
Q Consensus 841 EPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv-~~~-~~V~~~~~~a~~l~~ 903 (1022)
|||++ +|...+..+...+.+..+....+++++ ++. +.+...++..+.+.+
T Consensus 144 EPt~~-------------LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~ 195 (202)
T cd03233 144 NSTRG-------------LDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYE 195 (202)
T ss_pred CCCcc-------------CCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEEC
Confidence 99997 777777777766654433323344554 332 345555555555443
No 205
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=5.7e-25 Score=230.04 Aligned_cols=167 Identities=17% Similarity=0.149 Sum_probs=122.9
Q ss_pred eeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc----hhhhcCceEEEcCCCCCCccc
Q 001709 712 TTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD----QEGIAGGLCYCDSAGVNLQEL 784 (1022)
Q Consensus 712 ~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~----~~~lr~~IGyV~Q~~~~~~~l 784 (1022)
.++|+++||+++ +++|+||||||||||+|+|+|++ +|++|+|.++|.++ ...+++.|+|++|+...++ .
T Consensus 15 ~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~---~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~ 90 (234)
T cd03251 15 PPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFY---DVDSGRILIDGHDVRDYTLASLRRQIGLVSQDVFLFN-D 90 (234)
T ss_pred ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccc---cCCCCEEEECCEEhhhCCHHHHHhhEEEeCCCCeecc-c
Confidence 379999999998 99999999999999999999999 99999999998654 3345778999999433354 7
Q ss_pred cccccchHHHHhccccc-hHHH---------HHHHH-Hh-cCCccccCCCcCCch-HHHHHHHHH---------hhhccc
Q 001709 785 TMEAARFKDEMWMGIRD-LSRK---------TDLIV-LV-HNLSHKIPRYNYSSA-SGQQQPALS---------LLLNEA 842 (1022)
Q Consensus 785 TV~~~~~~ENI~~g~~~-~~~~---------v~~~L-~v-~gL~~~~~r~~~~LS-GqrQRvaIA---------LLLDEP 842 (1022)
|+ +||+.++... .... +.+++ .+ .++.+..++++.+|| |||||++|| ||||||
T Consensus 91 tv-----~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP 165 (234)
T cd03251 91 TV-----AENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEA 165 (234)
T ss_pred cH-----HHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCc
Confidence 99 9999886542 1111 22333 22 156667788999999 999999999 999999
Q ss_pred cCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCCcccccCccccccc
Q 001709 843 KSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCPYVMPGAVSASLSW 902 (1022)
Q Consensus 843 TSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~~V~~~~~~a~~l~ 902 (1022)
|++ +|...+..+...+.+. .. ..++++++|....+..++..+.+.
T Consensus 166 ~~~-------------LD~~~~~~l~~~l~~~-~~-~~tii~~sh~~~~~~~~d~v~~l~ 210 (234)
T cd03251 166 TSA-------------LDTESERLVQAALERL-MK-NRTTFVIAHRLSTIENADRIVVLE 210 (234)
T ss_pred ccc-------------CCHHHHHHHHHHHHHh-cC-CCEEEEEecCHHHHhhCCEEEEec
Confidence 996 7777777776666443 32 345555554433333455444443
No 206
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=5.4e-25 Score=233.75 Aligned_cols=163 Identities=14% Similarity=0.223 Sum_probs=124.0
Q ss_pred cccccCceeEEEEecCCCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCC-----CceEEEEccccc--
Q 001709 694 FIRPEGLSDVFIFCTSDFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRT-----INSGNLDAEADD-- 763 (1022)
Q Consensus 694 ~i~~~~l~~~~~~~~~~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~P-----tsG~I~idg~~~-- 763 (1022)
.+++++++ +.+ +..++|+||||+|+ +++|+|+||||||||+|+|+|++ +| ++|+|.++|.++
T Consensus 7 ~l~~~~l~---~~~--~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~---~~~~~~~~~G~i~~~g~~i~~ 78 (254)
T PRK14273 7 IIETENLN---LFY--TDFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMN---DLVEGIKIEGNVIYEGKNIYS 78 (254)
T ss_pred eEEEeeeE---EEe--CCceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccc---cCCcCCCCceEEEECCEeccc
Confidence 35544554 333 24579999999999 99999999999999999999999 76 589999998653
Q ss_pred ----hhhhcCceEEEcCCCCCCccccccccchHHHHhcccc-----c---hHHHHHHHH-HhcCC----ccccCCCcCCc
Q 001709 764 ----QEGIAGGLCYCDSAGVNLQELTMEAARFKDEMWMGIR-----D---LSRKTDLIV-LVHNL----SHKIPRYNYSS 826 (1022)
Q Consensus 764 ----~~~lr~~IGyV~Q~~~~~~~lTV~~~~~~ENI~~g~~-----~---~~~~v~~~L-~v~gL----~~~~~r~~~~L 826 (1022)
....+++|+||+|+...+ .+|| +|||.++.. . ..+++.+++ .+ ++ .+..++++.+|
T Consensus 79 ~~~~~~~~~~~i~~v~q~~~~~-~~tv-----~eni~~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~l~~~~~~~~~~L 151 (254)
T PRK14273 79 NNFDILELRRKIGMVFQTPNPF-LMSI-----YDNISYGPKIHGTKDKKKLDEIVEQSLKKS-ALWNEVKDKLNTNALSL 151 (254)
T ss_pred ccccHHHHhhceEEEeeccccc-cCcH-----HHHHHHHHHhcCCCCHHHHHHHHHHHHHHh-CCchhhHHHHhCCcccC
Confidence 134577899999954336 4899 999987642 1 234566777 66 76 45678999999
Q ss_pred h-HHHHHHHHH---------hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEe
Q 001709 827 A-SGQQQPALS---------LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVIN 886 (1022)
Q Consensus 827 S-GqrQRvaIA---------LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~ 886 (1022)
| |||||++|| |||||||++ +|...+..+...+.+. .. ..++++++
T Consensus 152 SgG~~qrv~laral~~~p~lllLDEPt~~-------------LD~~~~~~l~~~l~~~-~~-~~tvii~s 206 (254)
T PRK14273 152 SGGQQQRLCIARTLAIEPNVILMDEPTSA-------------LDPISTGKIEELIINL-KE-SYTIIIVT 206 (254)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCCcc-------------cCHHHHHHHHHHHHHH-hc-CCEEEEEe
Confidence 9 999999999 999999997 7777777777666544 33 34555554
No 207
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=8.2e-25 Score=231.64 Aligned_cols=154 Identities=11% Similarity=0.114 Sum_probs=119.1
Q ss_pred CeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc----hhhhcCceEEEcCCCCCCcc
Q 001709 711 FTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD----QEGIAGGLCYCDSAGVNLQE 783 (1022)
Q Consensus 711 ~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~----~~~lr~~IGyV~Q~~~~~~~ 783 (1022)
++.+|+|+||+++ +++|+||||||||||+|+|+|++...+|++|+|.++|.++ ....++.|+|+||+...|+
T Consensus 14 ~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~l~~- 92 (246)
T PRK14269 14 KKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPNVFV- 92 (246)
T ss_pred CEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhEEEEecCCcccc-
Confidence 4679999999998 9999999999999999999999711126999999998664 2345778999999443465
Q ss_pred ccccccchHHHHhcccc---------chHHHHHHHH-HhcCCc----cccCCCcCCch-HHHHHHHHH---------hhh
Q 001709 784 LTMEAARFKDEMWMGIR---------DLSRKTDLIV-LVHNLS----HKIPRYNYSSA-SGQQQPALS---------LLL 839 (1022)
Q Consensus 784 lTV~~~~~~ENI~~g~~---------~~~~~v~~~L-~v~gL~----~~~~r~~~~LS-GqrQRvaIA---------LLL 839 (1022)
.|+ +||+.++.. ...+++..++ .+ +|. +..++++.+|| |||||++|| |||
T Consensus 93 ~tv-----~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllL 166 (246)
T PRK14269 93 KSI-----YENISYAPKLHGMIKNKDEEEALVVDCLQKV-GLFEEVKDKLKQNALALSGGQQQRLCIARALAIKPKLLLL 166 (246)
T ss_pred ccH-----HHHhhhHHhhcCcccChHHHHHHHHHHHHHc-CCChhhhHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 799 999987531 1234566777 77 884 45788999999 999999999 999
Q ss_pred ccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEe
Q 001709 840 NEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVIN 886 (1022)
Q Consensus 840 DEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~ 886 (1022)
||||++ +|...+..+...+.+ +.. ..++++++
T Consensus 167 DEP~~~-------------LD~~~~~~l~~~l~~-~~~-~~tiii~t 198 (246)
T PRK14269 167 DEPTSA-------------LDPISSGVIEELLKE-LSH-NLSMIMVT 198 (246)
T ss_pred cCCccc-------------CCHHHHHHHHHHHHH-HhC-CCEEEEEe
Confidence 999997 677777766665544 333 34556665
No 208
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=5.4e-25 Score=229.55 Aligned_cols=166 Identities=16% Similarity=0.170 Sum_probs=121.4
Q ss_pred eeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc----hhhhcCceEEEcCCCCCCccc
Q 001709 712 TTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD----QEGIAGGLCYCDSAGVNLQEL 784 (1022)
Q Consensus 712 ~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~----~~~lr~~IGyV~Q~~~~~~~l 784 (1022)
+.+|+|+||+++ +++|+||||||||||||+|+|++ +|++|+|.+++.++ ...+++.++|++|+...++ .
T Consensus 16 ~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~---~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~ 91 (229)
T cd03254 16 KPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFY---DPQKGQILIDGIDIRDISRKSLRSMIGVVLQDTFLFS-G 91 (229)
T ss_pred CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCc---CCCCCEEEECCEeHHHcCHHHHhhhEEEecCCchhhh-h
Confidence 469999999998 99999999999999999999999 99999999998654 2345778999999433355 5
Q ss_pred cccccchHHHHhccccc-hHHHHHHHH-Hh----------cCCccccCCCcCCch-HHHHHHHHH---------hhhccc
Q 001709 785 TMEAARFKDEMWMGIRD-LSRKTDLIV-LV----------HNLSHKIPRYNYSSA-SGQQQPALS---------LLLNEA 842 (1022)
Q Consensus 785 TV~~~~~~ENI~~g~~~-~~~~v~~~L-~v----------~gL~~~~~r~~~~LS-GqrQRvaIA---------LLLDEP 842 (1022)
|+ +||+.+.... ...++.+++ .+ .++.+..++++.+|| |||||++|| ||||||
T Consensus 92 tv-----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~llllDEP 166 (229)
T cd03254 92 TI-----MENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEA 166 (229)
T ss_pred HH-----HHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCc
Confidence 99 9999886442 223333333 32 134445567789999 999999999 999999
Q ss_pred cCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCCcccccCcccccc
Q 001709 843 KSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCPYVMPGAVSASLS 901 (1022)
Q Consensus 843 TSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~~V~~~~~~a~~l 901 (1022)
|++ +|...+..+...+.+. . ...++++++|....+..++..+.+
T Consensus 167 ~~~-------------LD~~~~~~l~~~l~~~-~-~~~tii~~sh~~~~~~~~d~i~~l 210 (229)
T cd03254 167 TSN-------------IDTETEKLIQEALEKL-M-KGRTSIIIAHRLSTIKNADKILVL 210 (229)
T ss_pred ccc-------------CCHHHHHHHHHHHHHh-c-CCCEEEEEecCHHHHhhCCEEEEE
Confidence 996 7777777776666443 3 344555555444333344444444
No 209
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.92 E-value=4.5e-25 Score=260.36 Aligned_cols=179 Identities=16% Similarity=0.163 Sum_probs=136.0
Q ss_pred ceeEEEEecCCCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc----hhhhcCceE
Q 001709 700 LSDVFIFCTSDFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD----QEGIAGGLC 772 (1022)
Q Consensus 700 l~~~~~~~~~~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~----~~~lr~~IG 772 (1022)
++++.+.|. +..++|+|+||+++ +++|+|+||||||||+|+|+|++ +|++|+|.+||.++ ...+|+.|+
T Consensus 337 ~~~vsf~y~-~~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~---~p~~G~I~i~g~~i~~~~~~~~r~~i~ 412 (588)
T PRK13657 337 FDDVSFSYD-NSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVF---DPQSGRILIDGTDIRTVTRASLRRNIA 412 (588)
T ss_pred EEEEEEEeC-CCCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCc---CCCCCEEEECCEEhhhCCHHHHHhheE
Confidence 556666554 33569999999998 99999999999999999999999 99999999998654 567889999
Q ss_pred EEcCCCCCCccccccccchHHHHhccccc-hHHHHHHHH-Hh----------cCCccccCCCcCCch-HHHHHHHHH---
Q 001709 773 YCDSAGVNLQELTMEAARFKDEMWMGIRD-LSRKTDLIV-LV----------HNLSHKIPRYNYSSA-SGQQQPALS--- 836 (1022)
Q Consensus 773 yV~Q~~~~~~~lTV~~~~~~ENI~~g~~~-~~~~v~~~L-~v----------~gL~~~~~r~~~~LS-GqrQRvaIA--- 836 (1022)
||+| ++.++..|+ +|||.++..+ .++++..++ .+ .|++....+....|| |||||++||
T Consensus 413 ~v~Q-~~~lf~~Ti-----~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARal 486 (588)
T PRK13657 413 VVFQ-DAGLFNRSI-----EDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARAL 486 (588)
T ss_pred EEec-CcccccccH-----HHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHH
Confidence 9999 555555899 9999998542 334444444 33 244455566677899 999999999
Q ss_pred ------hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCCcccccCcccccccC
Q 001709 837 ------LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCPYVMPGAVSASLSWG 903 (1022)
Q Consensus 837 ------LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~~V~~~~~~a~~l~~ 903 (1022)
||||||||+ +|..+...+...+.+.. ...++++++|-...+..+|..+.+.+
T Consensus 487 l~~~~iliLDEpts~-------------LD~~t~~~i~~~l~~~~--~~~tvIiitHr~~~~~~~D~ii~l~~ 544 (588)
T PRK13657 487 LKDPPILILDEATSA-------------LDVETEAKVKAALDELM--KGRTTFIIAHRLSTVRNADRILVFDN 544 (588)
T ss_pred hcCCCEEEEeCCccC-------------CCHHHHHHHHHHHHHHh--cCCEEEEEEecHHHHHhCCEEEEEEC
Confidence 999999997 77777776666554332 23577777766666666666665543
No 210
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.92 E-value=9.5e-25 Score=224.57 Aligned_cols=159 Identities=18% Similarity=0.258 Sum_probs=117.5
Q ss_pred eeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccchhhhcCceEEEcCCCCCCccccccc
Q 001709 712 TTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADDQEGIAGGLCYCDSAGVNLQELTMEA 788 (1022)
Q Consensus 712 ~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~~~~lr~~IGyV~Q~~~~~~~lTV~~ 788 (1022)
.++|+++||+|+ +++|+||||||||||+++|+|++ +|++|+|.++| +|+|++|+ ..++.+|+
T Consensus 18 ~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~---~~~~G~i~~~g---------~i~~~~q~-~~l~~~t~-- 82 (204)
T cd03250 18 SFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGEL---EKLSGSVSVPG---------SIAYVSQE-PWIQNGTI-- 82 (204)
T ss_pred cceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcC---CCCCCeEEEcC---------EEEEEecC-chhccCcH--
Confidence 369999999998 99999999999999999999999 99999999987 58999994 44345899
Q ss_pred cchHHHHhccccchHHHHHHHH-Hh----------cCCccccCCCcCCch-HHHHHHHHH---------hhhccccCCCh
Q 001709 789 ARFKDEMWMGIRDLSRKTDLIV-LV----------HNLSHKIPRYNYSSA-SGQQQPALS---------LLLNEAKSLGI 847 (1022)
Q Consensus 789 ~~~~ENI~~g~~~~~~~v~~~L-~v----------~gL~~~~~r~~~~LS-GqrQRvaIA---------LLLDEPTSad~ 847 (1022)
+||+.++.....++..+++ .+ .++....++.+.+|| |||||++|| +||||||++
T Consensus 83 ---~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllDEP~~~-- 157 (204)
T cd03250 83 ---RENILFGKPFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSA-- 157 (204)
T ss_pred ---HHHhccCCCcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccc--
Confidence 9999987542122222222 21 134455677889999 999999999 999999997
Q ss_pred hHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCCcccccCcccccc
Q 001709 848 PWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCPYVMPGAVSASLS 901 (1022)
Q Consensus 848 ~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~~V~~~~~~a~~l 901 (1022)
+|...+..+...+++.+.....++++++|....+..++..+.+
T Consensus 158 -----------LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~~d~i~~l 200 (204)
T cd03250 158 -----------VDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVL 200 (204)
T ss_pred -----------CCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhhCCEEEEE
Confidence 7777777666655555544444666666554444334444433
No 211
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.92 E-value=3.6e-25 Score=232.66 Aligned_cols=164 Identities=16% Similarity=0.174 Sum_probs=123.7
Q ss_pred EEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccchhhhcCceEEEcCCCCCCccccccccch
Q 001709 715 FKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADDQEGIAGGLCYCDSAGVNLQELTMEAARF 791 (1022)
Q Consensus 715 LkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~~~~lr~~IGyV~Q~~~~~~~lTV~~~~~ 791 (1022)
|+++||+|+ +++|+||||||||||+|+|+|++ +|++|+|.++|.++. ......+|++|+...++.+|+
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~---~p~~G~i~~~g~~~~-~~~~~~~~v~q~~~l~~~~tv----- 71 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLA---QPTSGGVILEGKQIT-EPGPDRMVVFQNYSLLPWLTV----- 71 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC---CCCCceEEECCEECC-CCChhheEEecCcccCCCCCH-----
Confidence 478999998 99999999999999999999999 999999999987651 111235899995544777999
Q ss_pred HHHHhcccc------c---hHHHHHHHH-HhcCCccccCCCcCCch-HHHHHHHHH---------hhhccccCCChhHHH
Q 001709 792 KDEMWMGIR------D---LSRKTDLIV-LVHNLSHKIPRYNYSSA-SGQQQPALS---------LLLNEAKSLGIPWVL 851 (1022)
Q Consensus 792 ~ENI~~g~~------~---~~~~v~~~L-~v~gL~~~~~r~~~~LS-GqrQRvaIA---------LLLDEPTSad~~~v~ 851 (1022)
.||+.++.. . ..+++.+++ .+ ||.+..++++.+|| |||||++|| |||||||++
T Consensus 72 ~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~g------ 144 (230)
T TIGR01184 72 RENIALAVDRVLPDLSKSERRAIVEEHIALV-GLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGA------ 144 (230)
T ss_pred HHHHHHHHHhcccCCCHHHHHHHHHHHHHHc-CCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcC------
Confidence 999977521 1 234567788 77 99999999999999 999999999 999999997
Q ss_pred HHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCC-cccccCcccccc
Q 001709 852 AITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCP-YVMPGAVSASLS 901 (1022)
Q Consensus 852 ~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~-~V~~~~~~a~~l 901 (1022)
+|...+..+...+.+..++...++++++|.. .+...++..+.+
T Consensus 145 -------LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l 188 (230)
T TIGR01184 145 -------LDALTRGNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVML 188 (230)
T ss_pred -------CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEE
Confidence 6777777777666544443344666665332 233334444444
No 212
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.92 E-value=6.7e-25 Score=254.69 Aligned_cols=154 Identities=16% Similarity=0.204 Sum_probs=122.4
Q ss_pred CCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc-----hhhhcCceEEEcCCCCCC
Q 001709 710 DFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD-----QEGIAGGLCYCDSAGVNL 781 (1022)
Q Consensus 710 ~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~-----~~~lr~~IGyV~Q~~~~~ 781 (1022)
++.++|+||||+++ +++|+||||||||||+|+|+|++ +|++|+|.+++.++ ...++++||||+|+...+
T Consensus 15 ~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~---~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~ 91 (501)
T PRK11288 15 PGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNY---QPDAGSILIDGQEMRFASTTAALAAGVAIIYQELHLV 91 (501)
T ss_pred CCEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCC---CCCCCEEEECCEECCCCCHHHHHhCCEEEEEechhcc
Confidence 34679999999999 99999999999999999999999 99999999998654 123467899999954447
Q ss_pred ccccccccchHHHHhcccc-------c---hHHHHHHHH-HhcCCccccCCCcCCch-HHHHHHHHH---------hhhc
Q 001709 782 QELTMEAARFKDEMWMGIR-------D---LSRKTDLIV-LVHNLSHKIPRYNYSSA-SGQQQPALS---------LLLN 840 (1022)
Q Consensus 782 ~~lTV~~~~~~ENI~~g~~-------~---~~~~v~~~L-~v~gL~~~~~r~~~~LS-GqrQRvaIA---------LLLD 840 (1022)
+.+|| .||+.++.. . ..+++.+++ .+ ||.+..++++.+|| |||||++|| ||||
T Consensus 92 ~~~tv-----~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLD 165 (501)
T PRK11288 92 PEMTV-----AENLYLGQLPHKGGIVNRRLLNYEAREQLEHL-GVDIDPDTPLKYLSIGQRQMVEIAKALARNARVIAFD 165 (501)
T ss_pred CCCCH-----HHHHHhcccccccCCCCHHHHHHHHHHHHHHc-CCCCCcCCchhhCCHHHHHHHHHHHHHHhCCCEEEEc
Confidence 88999 999987531 1 235677888 87 99888899999999 999999999 9999
Q ss_pred cccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEe
Q 001709 841 EAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVIN 886 (1022)
Q Consensus 841 EPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~ 886 (1022)
|||++ +|...+..+...+.+ +.....++++++
T Consensus 166 EPt~~-------------LD~~~~~~l~~~l~~-~~~~g~tiiiit 197 (501)
T PRK11288 166 EPTSS-------------LSAREIEQLFRVIRE-LRAEGRVILYVS 197 (501)
T ss_pred CCCCC-------------CCHHHHHHHHHHHHH-HHhCCCEEEEEe
Confidence 99997 566666665554443 333333555554
No 213
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=7e-25 Score=232.47 Aligned_cols=152 Identities=14% Similarity=0.197 Sum_probs=119.8
Q ss_pred CeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCC-----CceEEEEccccc------hhhhcCceEEEcC
Q 001709 711 FTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRT-----INSGNLDAEADD------QEGIAGGLCYCDS 776 (1022)
Q Consensus 711 ~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~P-----tsG~I~idg~~~------~~~lr~~IGyV~Q 776 (1022)
..++|+||||+|+ +++|+||||||||||+++|+|++ +| ++|+|.++|.++ ...++++|+|++|
T Consensus 16 ~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~---~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q 92 (253)
T PRK14267 16 SNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLL---ELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQ 92 (253)
T ss_pred CeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccC---CcccCCCCceEEEECCEEccccccChHHHhhceeEEec
Confidence 4679999999998 99999999999999999999999 87 499999998643 2245678999999
Q ss_pred CCCCCccccccccchHHHHhcccc------c---hHHHHHHHH-HhcCCc----cccCCCcCCch-HHHHHHHHH-----
Q 001709 777 AGVNLQELTMEAARFKDEMWMGIR------D---LSRKTDLIV-LVHNLS----HKIPRYNYSSA-SGQQQPALS----- 836 (1022)
Q Consensus 777 ~~~~~~~lTV~~~~~~ENI~~g~~------~---~~~~v~~~L-~v~gL~----~~~~r~~~~LS-GqrQRvaIA----- 836 (1022)
+...++.+|+ .||+.++.. . ..+++.+++ .+ |+. +..++++.+|| |||||++||
T Consensus 93 ~~~~~~~~tv-----~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~ 166 (253)
T PRK14267 93 YPNPFPHLTI-----YDNVAIGVKLNGLVKSKKELDERVEWALKKA-ALWDEVKDRLNDYPSNLSGGQRQRLVIARALAM 166 (253)
T ss_pred CCccCCCCcH-----HHHHHHHHHhcCccCCHHHHHHHHHHHHHHc-CCccchhhhhccChhhCCHHHHHHHHHHHHHhc
Confidence 5444778899 999987531 1 224566777 66 763 45788999999 999999999
Q ss_pred ----hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEe
Q 001709 837 ----LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVIN 886 (1022)
Q Consensus 837 ----LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~ 886 (1022)
|||||||++ +|...+..+...+.+. .. ..++++++
T Consensus 167 ~p~llllDEP~~~-------------LD~~~~~~l~~~l~~~-~~-~~tiii~s 205 (253)
T PRK14267 167 KPKILLMDEPTAN-------------IDPVGTAKIEELLFEL-KK-EYTIVLVT 205 (253)
T ss_pred CCCEEEEcCCCcc-------------CCHHHHHHHHHHHHHH-hh-CCEEEEEE
Confidence 999999996 7777777776666554 33 34566665
No 214
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.92 E-value=2.8e-25 Score=285.05 Aligned_cols=182 Identities=15% Similarity=0.180 Sum_probs=138.5
Q ss_pred ceeEEEEecCC-CeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCC------------------------
Q 001709 700 LSDVFIFCTSD-FTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRT------------------------ 751 (1022)
Q Consensus 700 l~~~~~~~~~~-~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~P------------------------ 751 (1022)
++++.|.|..+ ..++|+||||+|+ ++||+||||||||||+++|+|+| +|
T Consensus 1168 f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~y---dp~~~~~~~~~~~~~~~~~~~~~~~~ 1244 (1466)
T PTZ00265 1168 IMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFY---DLKNDHHIVFKNEHTNDMTNEQDYQG 1244 (1466)
T ss_pred EEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhC---CCcccccccccccccccccccccccc
Confidence 67777666432 3579999999999 99999999999999999999999 77
Q ss_pred ------------------------------CceEEEEccccc----hhhhcCceEEEcCCCCCCccccccccchHHHHhc
Q 001709 752 ------------------------------INSGNLDAEADD----QEGIAGGLCYCDSAGVNLQELTMEAARFKDEMWM 797 (1022)
Q Consensus 752 ------------------------------tsG~I~idg~~~----~~~lr~~IGyV~Q~~~~~~~lTV~~~~~~ENI~~ 797 (1022)
++|+|++||.++ ...+|+.||||+| ++.++..|+ +|||.|
T Consensus 1245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Q-ep~LF~gTI-----reNI~~ 1318 (1466)
T PTZ00265 1245 DEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQ-EPMLFNMSI-----YENIKF 1318 (1466)
T ss_pred ccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCC-CCccccccH-----HHHHhc
Confidence 699999998664 6788999999999 566556999 999999
Q ss_pred cccc-hHHHHHHHH-----------HhcCCccccCCCcCCch-HHHHHHHHH---------hhhccccCCChhHHHHHhh
Q 001709 798 GIRD-LSRKTDLIV-----------LVHNLSHKIPRYNYSSA-SGQQQPALS---------LLLNEAKSLGIPWVLAITN 855 (1022)
Q Consensus 798 g~~~-~~~~v~~~L-----------~v~gL~~~~~r~~~~LS-GqrQRvaIA---------LLLDEPTSad~~~v~~I~~ 855 (1022)
|..+ .++.+.+++ +.+|++...+.+..+|| |||||+||| ||||||||+
T Consensus 1319 g~~~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSa---------- 1388 (1466)
T PTZ00265 1319 GKEDATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSS---------- 1388 (1466)
T ss_pred CCCCCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccc----------
Confidence 9653 233333333 33456666777888999 999999999 999999997
Q ss_pred hhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCCcccccCcccccccC
Q 001709 856 KFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCPYVMPGAVSASLSWG 903 (1022)
Q Consensus 856 ~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~~V~~~~~~a~~l~~ 903 (1022)
||..+.+.+...+.+.......|+++|.|-...+..+|..+.+.+
T Consensus 1389 ---LD~~sE~~I~~~L~~~~~~~~~TvIiIaHRlsti~~aD~Ivvl~~ 1433 (1466)
T PTZ00265 1389 ---LDSNSEKLIEKTIVDIKDKADKTIITIAHRIASIKRSDKIVVFNN 1433 (1466)
T ss_pred ---cCHHHHHHHHHHHHHHhccCCCEEEEEechHHHHHhCCEEEEEeC
Confidence 777776666555543321234577777655555556666666543
No 215
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.92 E-value=9.7e-25 Score=232.58 Aligned_cols=167 Identities=13% Similarity=0.164 Sum_probs=125.0
Q ss_pred CeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCC-----CceEEEEccccc------hhhhcCceEEEcC
Q 001709 711 FTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRT-----INSGNLDAEADD------QEGIAGGLCYCDS 776 (1022)
Q Consensus 711 ~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~P-----tsG~I~idg~~~------~~~lr~~IGyV~Q 776 (1022)
..++|++|||+|+ +++|+||||||||||+|+|+|++ +| ++|+|.++|.++ ....++.|+|++|
T Consensus 16 ~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~---~~~~~~~~~G~I~~~g~~~~~~~~~~~~~~~~i~~~~q 92 (258)
T PRK14241 16 SFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMH---EVIPGARVEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQ 92 (258)
T ss_pred CEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccC---CcccCCCcceEEEECCEeccccccChHHHhcceEEEcc
Confidence 4679999999998 99999999999999999999998 74 799999998553 2345678999999
Q ss_pred CCCCCccccccccchHHHHhcccc-----c---hHHHHHHHH-HhcCCc----cccCCCcCCch-HHHHHHHHH------
Q 001709 777 AGVNLQELTMEAARFKDEMWMGIR-----D---LSRKTDLIV-LVHNLS----HKIPRYNYSSA-SGQQQPALS------ 836 (1022)
Q Consensus 777 ~~~~~~~lTV~~~~~~ENI~~g~~-----~---~~~~v~~~L-~v~gL~----~~~~r~~~~LS-GqrQRvaIA------ 836 (1022)
+...++.+|+ +||+.++.. . ..+++.+++ .+ ||. +..++++.+|| |||||++||
T Consensus 93 ~~~~~~~~tv-----~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~ 166 (258)
T PRK14241 93 RPNPFPTMSI-----RDNVVAGLKLNGVRNKKDLDELVEKSLRGA-NLWNEVKDRLDKPGGGLSGGQQQRLCIARAIAVE 166 (258)
T ss_pred ccccCCCCcH-----HHHHHHHHHhcCCCCHHHHHHHHHHHHHHc-CCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcC
Confidence 5444777899 999986532 1 234566777 76 773 56789999999 999999999
Q ss_pred ---hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCC-cccccCcccccc
Q 001709 837 ---LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCP-YVMPGAVSASLS 901 (1022)
Q Consensus 837 ---LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~-~V~~~~~~a~~l 901 (1022)
|||||||++ +|...+..+...+.+ +.. ..++++++|.. .+...++..+.+
T Consensus 167 p~llllDEPt~~-------------LD~~~~~~l~~~l~~-~~~-~~tviivsH~~~~~~~~~d~i~~l 220 (258)
T PRK14241 167 PDVLLMDEPCSA-------------LDPISTLAIEDLINE-LKQ-DYTIVIVTHNMQQAARVSDQTAFF 220 (258)
T ss_pred CCEEEEcCCCcc-------------CCHHHHHHHHHHHHH-Hhc-CCEEEEEecCHHHHHHhCCEEEEE
Confidence 999999996 677676666655543 333 34556665332 233344444444
No 216
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.92 E-value=1.1e-24 Score=233.97 Aligned_cols=163 Identities=12% Similarity=0.162 Sum_probs=123.7
Q ss_pred cccccCceeEEEEecCCCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCC-----CceEEEEccccc--
Q 001709 694 FIRPEGLSDVFIFCTSDFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRT-----INSGNLDAEADD-- 763 (1022)
Q Consensus 694 ~i~~~~l~~~~~~~~~~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~P-----tsG~I~idg~~~-- 763 (1022)
.+++++++ +.+ ++.++|+||||+|+ +++|+||||||||||+|+|+|++ +| ++|+|+++|.++
T Consensus 19 ~l~~~nl~---~~~--~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~---~~~~~~~~~G~I~~~g~~i~~ 90 (267)
T PRK14235 19 KMRARDVS---VFY--GEKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMN---DTIDGCRVTGKITLDGEDIYD 90 (267)
T ss_pred eEEEEeEE---EEE--CCEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhc---ccccCCCCceEEEECCEECcc
Confidence 35544454 333 34679999999998 99999999999999999999999 74 899999998654
Q ss_pred ----hhhhcCceEEEcCCCCCCccccccccchHHHHhcccc------c---hHHHHHHHH-HhcCCcc----ccCCCcCC
Q 001709 764 ----QEGIAGGLCYCDSAGVNLQELTMEAARFKDEMWMGIR------D---LSRKTDLIV-LVHNLSH----KIPRYNYS 825 (1022)
Q Consensus 764 ----~~~lr~~IGyV~Q~~~~~~~lTV~~~~~~ENI~~g~~------~---~~~~v~~~L-~v~gL~~----~~~r~~~~ 825 (1022)
...+++.|+||+|+...++ .|+ .||+.++.. . ..+++.+++ .+ ||.+ ..++++.+
T Consensus 91 ~~~~~~~~~~~i~~v~q~~~~~~-~tv-----~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~~~~~ 163 (267)
T PRK14235 91 PRLDVVELRARVGMVFQKPNPFP-KSI-----YENVAYGPRIHGLARSKAELDEIVETSLRKA-GLWEEVKDRLHEPGTG 163 (267)
T ss_pred cccchHHHhhceEEEecCCCCCC-CcH-----HHHHHHHHHhcccccchHHHHHHHHHHHHHc-CCchhhhHHhhCCccc
Confidence 1245678999999444465 599 999987532 1 234567777 77 8853 56889999
Q ss_pred ch-HHHHHHHHH---------hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEe
Q 001709 826 SA-SGQQQPALS---------LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVIN 886 (1022)
Q Consensus 826 LS-GqrQRvaIA---------LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~ 886 (1022)
|| |||||++|| |||||||++ +|...+..+...+.+. .. ..++++++
T Consensus 164 LSgGq~qrv~laral~~~p~lllLDEPt~~-------------LD~~~~~~l~~~L~~l-~~-~~tiiivt 219 (267)
T PRK14235 164 LSGGQQQRLCIARAIAVSPEVILMDEPCSA-------------LDPIATAKVEELIDEL-RQ-NYTIVIVT 219 (267)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCcC-------------CCHHHHHHHHHHHHHH-hc-CCeEEEEE
Confidence 99 999999999 999999997 7777777766666443 33 34555655
No 217
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=9e-25 Score=234.29 Aligned_cols=181 Identities=12% Similarity=0.159 Sum_probs=128.1
Q ss_pred cccccCceeEEEEecCCCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCC--CCceEEEEccccc-----
Q 001709 694 FIRPEGLSDVFIFCTSDFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVR--TINSGNLDAEADD----- 763 (1022)
Q Consensus 694 ~i~~~~l~~~~~~~~~~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~--PtsG~I~idg~~~----- 763 (1022)
.+.+++++ +.+ +..++|++|||+|+ +++|+|+||||||||+|+|+|++...+ |++|+|.++|.++
T Consensus 21 ~l~~~~l~---~~~--~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~ 95 (268)
T PRK14248 21 ILEVKDLS---IYY--GEKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNI 95 (268)
T ss_pred eEEEEEEE---EEe--CCceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccc
Confidence 35544444 333 34679999999999 999999999999999999999861001 6899999998654
Q ss_pred -hhhhcCceEEEcCCCCCCccccccccchHHHHhcccc--c------hHHHHHHHH-HhcCCc----cccCCCcCCch-H
Q 001709 764 -QEGIAGGLCYCDSAGVNLQELTMEAARFKDEMWMGIR--D------LSRKTDLIV-LVHNLS----HKIPRYNYSSA-S 828 (1022)
Q Consensus 764 -~~~lr~~IGyV~Q~~~~~~~lTV~~~~~~ENI~~g~~--~------~~~~v~~~L-~v~gL~----~~~~r~~~~LS-G 828 (1022)
....+++|+|++|+...|+ .|+ +||+.++.. . ..+.+.+++ .+ ++. +..++++.+|| |
T Consensus 96 ~~~~~~~~i~~v~q~~~~~~-~tv-----~enl~~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~~~~~LSgG 168 (268)
T PRK14248 96 NVVNLRREIGMVFQKPNPFP-KSI-----YNNITHALKYAGERRKSVLDEIVEESLTKA-ALWDEVKDRLHSSALSLSGG 168 (268)
T ss_pred cHHHHhccEEEEecCCccCc-ccH-----HHHHHHHHHhcCCCcHHHHHHHHHHHHHHc-CCCcchHHHHhcCcccCCHH
Confidence 1245678999999544466 599 999987532 1 123456666 65 763 56789999999 9
Q ss_pred HHHHHHHH---------hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCCc-ccccCccc
Q 001709 829 GQQQPALS---------LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCPY-VMPGAVSA 898 (1022)
Q Consensus 829 qrQRvaIA---------LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~~-V~~~~~~a 898 (1022)
||||++|| |||||||++ +|...+..+...+.+ +.. ..++++++|... +...++..
T Consensus 169 q~qrl~laral~~~p~lllLDEPt~~-------------LD~~~~~~l~~~l~~-~~~-~~tiii~tH~~~~~~~~~d~v 233 (268)
T PRK14248 169 QQQRLCIARTLAMKPAVLLLDEPASA-------------LDPISNAKIEELITE-LKE-EYSIIIVTHNMQQALRVSDRT 233 (268)
T ss_pred HHHHHHHHHHHhCCCCEEEEcCCCcc-------------cCHHHHHHHHHHHHH-Hhc-CCEEEEEEeCHHHHHHhCCEE
Confidence 99999999 999999997 777777777665544 333 345566653332 33334444
Q ss_pred ccc
Q 001709 899 SLS 901 (1022)
Q Consensus 899 ~~l 901 (1022)
+++
T Consensus 234 ~~l 236 (268)
T PRK14248 234 AFF 236 (268)
T ss_pred EEE
Confidence 433
No 218
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.92 E-value=9.9e-25 Score=236.04 Aligned_cols=170 Identities=16% Similarity=0.130 Sum_probs=128.3
Q ss_pred CCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCC--------ceEEEEccccc----hhhhcCceEEE
Q 001709 710 DFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTI--------NSGNLDAEADD----QEGIAGGLCYC 774 (1022)
Q Consensus 710 ~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~Pt--------sG~I~idg~~~----~~~lr~~IGyV 774 (1022)
+++.+|++|||+|+ +++|+||||||||||+|+|+|++ +|+ +|+|.++|.++ ....++.++|+
T Consensus 12 ~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~---~p~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~v 88 (272)
T PRK13547 12 RHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDL---TGGGAPRGARVTGDVTLNGEPLAAIDAPRLARLRAVL 88 (272)
T ss_pred CCEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC---CCcccccccCCceEEEECCEEcccCCHHHHHhhcEEe
Confidence 35679999999999 99999999999999999999999 898 99999998654 23456679999
Q ss_pred cCCCCCCccccccccchHHHHhccccc-----------hHHHHHHHH-HhcCCccccCCCcCCch-HHHHHHHHH-----
Q 001709 775 DSAGVNLQELTMEAARFKDEMWMGIRD-----------LSRKTDLIV-LVHNLSHKIPRYNYSSA-SGQQQPALS----- 836 (1022)
Q Consensus 775 ~Q~~~~~~~lTV~~~~~~ENI~~g~~~-----------~~~~v~~~L-~v~gL~~~~~r~~~~LS-GqrQRvaIA----- 836 (1022)
||+...++.+|+ +||+.++... ..+++.+++ .+ ||.+..++++.+|| |||||++||
T Consensus 89 ~q~~~~~~~~tv-----~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~LSgG~~qrv~laral~~ 162 (272)
T PRK13547 89 PQAAQPAFAFSA-----REIVLLGRYPHARRAGALTHRDGEIAWQALALA-GATALVGRDVTTLSGGELARVQFARVLAQ 162 (272)
T ss_pred cccCCCCCCCcH-----HHHHhhcccccccccccCCHHHHHHHHHHHHHc-CcHhhhcCCcccCCHHHHHHHHHHHHHhc
Confidence 995444556899 9999875310 234567778 77 99999999999999 999999998
Q ss_pred -------------hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCC-cccccCcccccc
Q 001709 837 -------------LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCP-YVMPGAVSASLS 901 (1022)
Q Consensus 837 -------------LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~-~V~~~~~~a~~l 901 (1022)
|||||||++ +|...+..+...+.+..+....++++++|.. .+...++..+++
T Consensus 163 ~~~~~~~~~~p~lllLDEPt~~-------------LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~l 228 (272)
T PRK13547 163 LWPPHDAAQPPRYLLLDEPTAA-------------LDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAML 228 (272)
T ss_pred cccccccCCCCCEEEEcCcccc-------------CCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEE
Confidence 468999997 7777777777766544332234556654332 222334444444
No 219
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.92 E-value=4.3e-25 Score=256.02 Aligned_cols=189 Identities=16% Similarity=0.159 Sum_probs=145.0
Q ss_pred CCCcccccCceeEEEEec------CCCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccc
Q 001709 691 DEKFIRPEGLSDVFIFCT------SDFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEA 761 (1022)
Q Consensus 691 ~~~~i~~~~l~~~~~~~~------~~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~ 761 (1022)
..+.++++++++.|.... .+...|++||||+|+ ++||||+||||||||.|+|+||+ +|++|.|.++|.
T Consensus 277 ~~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~---~P~~G~i~~~g~ 353 (539)
T COG1123 277 AEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLL---PPSSGSIIFDGQ 353 (539)
T ss_pred cCceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCC---CCCCceEEEeCc
Confidence 445577778887553211 123579999999999 99999999999999999999999 999999999986
Q ss_pred cc------hhhhcCceEEEcCCCCC--CccccccccchHHHHhcccc--------chHHHHHHHH-HhcCCcc-ccCCCc
Q 001709 762 DD------QEGIAGGLCYCDSAGVN--LQELTMEAARFKDEMWMGIR--------DLSRKTDLIV-LVHNLSH-KIPRYN 823 (1022)
Q Consensus 762 ~~------~~~lr~~IGyV~Q~~~~--~~~lTV~~~~~~ENI~~g~~--------~~~~~v~~~L-~v~gL~~-~~~r~~ 823 (1022)
+. ....|+.+-||||++.. .|.+|| .++|.-.+. ..++++.+++ ++ ||.. ++++||
T Consensus 354 ~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV-----~~~i~epL~~~~~~~~~~~~~rv~~ll~~V-gL~~~~l~ryP 427 (539)
T COG1123 354 DLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTV-----GDILAEPLRIHGGGSGAERRARVAELLELV-GLPPEFLDRYP 427 (539)
T ss_pred ccccccchhhhhhhheEEEEeCcccccCccccH-----HHHHHhHHhhhcccchHHHHHHHHHHHHHc-CCCHHHHhcCc
Confidence 52 34467889999997655 688999 888876543 1345688889 88 9986 899999
Q ss_pred CCch-HHHHHHHHH---------hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCCcccc
Q 001709 824 YSSA-SGQQQPALS---------LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCPYVMP 893 (1022)
Q Consensus 824 ~~LS-GqrQRvaIA---------LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~~V~~ 893 (1022)
++|| |||||+||| |++|||||+ +|...+..++..+.+.-++..-+.++|. |
T Consensus 428 ~elSGGQrQRvaIARALa~~P~lli~DEp~Sa-------------LDvsvqa~VlnLl~~lq~e~g~t~lfIS------H 488 (539)
T COG1123 428 HELSGGQRQRVAIARALALEPKLLILDEPVSA-------------LDVSVQAQVLNLLKDLQEELGLTYLFIS------H 488 (539)
T ss_pred hhcCcchhHHHHHHHHHhcCCCEEEecCCccc-------------cCHHHHHHHHHHHHHHHHHhCCEEEEEe------C
Confidence 9999 999999999 999999997 5666666666555544444444555554 5
Q ss_pred cCcccccccCCCCC
Q 001709 894 GAVSASLSWGASGG 907 (1022)
Q Consensus 894 ~~~~a~~l~~~~~~ 907 (1022)
+.+-+-++++|+.+
T Consensus 489 Dl~vV~~i~drv~v 502 (539)
T COG1123 489 DLAVVRYIADRVAV 502 (539)
T ss_pred CHHHHHhhCceEEE
Confidence 55555666777665
No 220
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=1.2e-24 Score=234.21 Aligned_cols=179 Identities=12% Similarity=0.140 Sum_probs=130.5
Q ss_pred cccccCceeEEEEecCCCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCC-----CCceEEEEccccc--
Q 001709 694 FIRPEGLSDVFIFCTSDFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVR-----TINSGNLDAEADD-- 763 (1022)
Q Consensus 694 ~i~~~~l~~~~~~~~~~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~-----PtsG~I~idg~~~-- 763 (1022)
.+++++++ +.+ +...+|+||||+|+ +++|+||||||||||+++|+|++ + |++|+|.++|.++
T Consensus 13 ~l~i~nl~---~~~--~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~---~~~~~~p~~G~v~~~g~~i~~ 84 (269)
T PRK14259 13 IISLQNVT---ISY--GTFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMN---DLIEGCSLKGRVLFDGTDLYD 84 (269)
T ss_pred eEEEEeEE---EEE--CCEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccc---cccCCCCCceEEEECCEEccc
Confidence 35544454 333 34679999999998 99999999999999999999998 6 6999999998653
Q ss_pred ----hhhhcCceEEEcCCCCCCccccccccchHHHHhccccc------hHHHHHHHH-HhcCC----ccccCCCcCCch-
Q 001709 764 ----QEGIAGGLCYCDSAGVNLQELTMEAARFKDEMWMGIRD------LSRKTDLIV-LVHNL----SHKIPRYNYSSA- 827 (1022)
Q Consensus 764 ----~~~lr~~IGyV~Q~~~~~~~lTV~~~~~~ENI~~g~~~------~~~~v~~~L-~v~gL----~~~~~r~~~~LS- 827 (1022)
...+++.|+||||+...|+ .|+ +||+.++... ..+++.+++ .+ ++ .+..++++.+||
T Consensus 85 ~~~~~~~~~~~i~~v~q~~~l~~-~tv-----~enl~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~l~~~~~~~~~~LS~ 157 (269)
T PRK14259 85 PRVDPVEVRRRIGMVFQQPNPFP-KSI-----YENIAFGARINGYTGDMDELVERSLRKA-AVWDECKDKLNESGYSLSG 157 (269)
T ss_pred ccCCHHHHhhceEEEccCCccch-hhH-----HHHHhhhhhhcCCcHHHHHHHHHHHHHh-CCcchhhhhhCCCcccCCH
Confidence 2345678999999544466 699 9999876431 234456666 65 65 456789999999
Q ss_pred HHHHHHHHH---------hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecC-CcccccCcc
Q 001709 828 SGQQQPALS---------LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSC-PYVMPGAVS 897 (1022)
Q Consensus 828 GqrQRvaIA---------LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~-~~V~~~~~~ 897 (1022)
|||||++|| |||||||++ +|...+..+...+. .+.. ..++++++|. +.+...++.
T Consensus 158 G~~qrl~laral~~~p~lllLDEPt~g-------------LD~~~~~~l~~~l~-~~~~-~~tiiivtH~~~~~~~~~d~ 222 (269)
T PRK14259 158 GQQQRLCIARTIAIEPEVILMDEPCSA-------------LDPISTLKIEETMH-ELKK-NFTIVIVTHNMQQAVRVSDM 222 (269)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCcc-------------CCHHHHHHHHHHHH-HHhc-CCEEEEEeCCHHHHHHhcCE
Confidence 999999999 999999997 77777777666554 3433 3455666533 234444555
Q ss_pred ccccc
Q 001709 898 ASLSW 902 (1022)
Q Consensus 898 a~~l~ 902 (1022)
.+++.
T Consensus 223 i~~l~ 227 (269)
T PRK14259 223 TAFFN 227 (269)
T ss_pred EEEEe
Confidence 55544
No 221
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=1.2e-24 Score=236.61 Aligned_cols=164 Identities=12% Similarity=0.205 Sum_probs=124.6
Q ss_pred CcccccCceeEEEEecCCCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCC-----CCceEEEEccccc-
Q 001709 693 KFIRPEGLSDVFIFCTSDFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVR-----TINSGNLDAEADD- 763 (1022)
Q Consensus 693 ~~i~~~~l~~~~~~~~~~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~-----PtsG~I~idg~~~- 763 (1022)
..+++++++ +.+ +...+|+|+||+|+ +++|+||||||||||+++|+|++ + |++|+|.++|.++
T Consensus 38 ~~l~i~~l~---~~~--~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~---~~~~~~p~~G~I~i~G~~i~ 109 (285)
T PRK14254 38 TVIEARDLN---VFY--GDEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMN---DLIDAARVEGELTFRGKNVY 109 (285)
T ss_pred ceEEEEEEE---EEE--CCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccC---CcccCCCCceEEEECCEEcc
Confidence 345545454 333 34679999999998 99999999999999999999998 6 6899999998653
Q ss_pred -----hhhhcCceEEEcCCCCCCccccccccchHHHHhcccc------chHHHHHHHH-HhcCCc----cccCCCcCCch
Q 001709 764 -----QEGIAGGLCYCDSAGVNLQELTMEAARFKDEMWMGIR------DLSRKTDLIV-LVHNLS----HKIPRYNYSSA 827 (1022)
Q Consensus 764 -----~~~lr~~IGyV~Q~~~~~~~lTV~~~~~~ENI~~g~~------~~~~~v~~~L-~v~gL~----~~~~r~~~~LS 827 (1022)
....++.++||||+...|+ .|+ .||+.++.. ...+++.+++ .+ +|. +..++++.+||
T Consensus 110 ~~~~~~~~~~~~i~~v~q~~~l~~-~tv-----~enl~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~i~~~~~~~~~~LS 182 (285)
T PRK14254 110 DADVDPVALRRRIGMVFQKPNPFP-KSI-----YDNVAYGLKIQGYDGDIDERVEESLRRA-ALWDEVKDQLDSSGLDLS 182 (285)
T ss_pred ccccchHhhhccEEEEecCCccCc-CCH-----HHHHHHHHHHcCCcHHHHHHHHHHHHHc-CCCchhHHHHhCCcccCC
Confidence 2345778999999544466 599 999987532 1345677778 76 774 46789999999
Q ss_pred -HHHHHHHHH---------hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEe
Q 001709 828 -SGQQQPALS---------LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVIN 886 (1022)
Q Consensus 828 -GqrQRvaIA---------LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~ 886 (1022)
|||||++|| |||||||++ +|...+..+...+.+ +... .++++++
T Consensus 183 gGe~qrv~LAraL~~~p~lLLLDEPts~-------------LD~~~~~~l~~~L~~-~~~~-~tiii~t 236 (285)
T PRK14254 183 GGQQQRLCIARAIAPDPEVILMDEPASA-------------LDPVATSKIEDLIEE-LAEE-YTVVIVT 236 (285)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCCC-------------CCHHHHHHHHHHHHH-HhcC-CEEEEEe
Confidence 999999999 999999997 677777666655543 4332 4555555
No 222
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.92 E-value=1.1e-24 Score=232.71 Aligned_cols=151 Identities=15% Similarity=0.220 Sum_probs=118.4
Q ss_pred CeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCC-----CCceEEEEccccc------hhhhcCceEEEcC
Q 001709 711 FTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVR-----TINSGNLDAEADD------QEGIAGGLCYCDS 776 (1022)
Q Consensus 711 ~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~-----PtsG~I~idg~~~------~~~lr~~IGyV~Q 776 (1022)
..++|+||||+|+ +++|+||||||||||+|+|+|++ + |++|+|.+++.++ ...++++|+|+||
T Consensus 25 ~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~---~~~p~~p~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q 101 (260)
T PRK10744 25 KFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMY---ELYPEQRAEGEILLDGENILTPKQDIALLRAKVGMVFQ 101 (260)
T ss_pred CeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhccc---ccCCCCCcceEEEECCEEccccccchHHHhcceEEEec
Confidence 4579999999998 99999999999999999999998 6 5899999997553 2345778999999
Q ss_pred CCCCCccccccccchHHHHhcccc-----c---hHHHHHHHH-HhcCC----ccccCCCcCCch-HHHHHHHHH------
Q 001709 777 AGVNLQELTMEAARFKDEMWMGIR-----D---LSRKTDLIV-LVHNL----SHKIPRYNYSSA-SGQQQPALS------ 836 (1022)
Q Consensus 777 ~~~~~~~lTV~~~~~~ENI~~g~~-----~---~~~~v~~~L-~v~gL----~~~~~r~~~~LS-GqrQRvaIA------ 836 (1022)
+...++ +|+ +||+.++.. . ..+++.+++ .+ ++ .+..++++.+|| |||||++||
T Consensus 102 ~~~~~~-~tv-----~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~ 174 (260)
T PRK10744 102 KPTPFP-MSI-----YDNIAFGVRLFEKLSRAEMDERVEWALTKA-ALWNEVKDKLHQSGYSLSGGQQQRLCIARGIAIR 174 (260)
T ss_pred CCccCc-CcH-----HHHHhhhHhhcCCCCHHHHHHHHHHHHHHc-CCChhhHHHHhcCCCCCCHHHHHHHHHHHHHHCC
Confidence 543365 899 999987532 1 235677778 76 76 356789999999 999999999
Q ss_pred ---hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEe
Q 001709 837 ---LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVIN 886 (1022)
Q Consensus 837 ---LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~ 886 (1022)
|||||||++ +|...+..+...+.+. .. ..++++++
T Consensus 175 p~lllLDEPt~~-------------LD~~~~~~l~~~L~~~-~~-~~tiii~s 212 (260)
T PRK10744 175 PEVLLLDEPCSA-------------LDPISTGRIEELITEL-KQ-DYTVVIVT 212 (260)
T ss_pred CCEEEEcCCCcc-------------CCHHHHHHHHHHHHHH-hc-CCeEEEEe
Confidence 999999997 6777777666655443 33 34555555
No 223
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.92 E-value=7.5e-25 Score=252.53 Aligned_cols=179 Identities=16% Similarity=0.214 Sum_probs=136.8
Q ss_pred cccccCceeEEEEecCCCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc-----hh
Q 001709 694 FIRPEGLSDVFIFCTSDFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD-----QE 765 (1022)
Q Consensus 694 ~i~~~~l~~~~~~~~~~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~-----~~ 765 (1022)
.+++++++|.| ++.+||++|||+++ +++|+|.||||||||+|+|+|.| +|++|+|++||... ..
T Consensus 8 ll~~~~i~K~F-----ggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~---~p~~G~I~~~G~~~~~~sp~~ 79 (500)
T COG1129 8 LLELRGISKSF-----GGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVY---PPDSGEILIDGKPVAFSSPRD 79 (500)
T ss_pred eeeeecceEEc-----CCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcc---cCCCceEEECCEEccCCCHHH
Confidence 46667777744 67899999999999 99999999999999999999999 99999999998654 34
Q ss_pred hhcCceEEEcCCCCCCccccccccchHHHHhccccc-----------hHHHHHHHH-HhcCCccccCCCcCCch-HHHHH
Q 001709 766 GIAGGLCYCDSAGVNLQELTMEAARFKDEMWMGIRD-----------LSRKTDLIV-LVHNLSHKIPRYNYSSA-SGQQQ 832 (1022)
Q Consensus 766 ~lr~~IGyV~Q~~~~~~~lTV~~~~~~ENI~~g~~~-----------~~~~v~~~L-~v~gL~~~~~r~~~~LS-GqrQR 832 (1022)
....+|++|+|+-.++|++|| .|||.+|... ..+++.++| .+ |+..-.+..+.+|| ||||.
T Consensus 80 A~~~GI~~V~QEl~L~p~LsV-----aeNifLgre~~~~~g~id~~~m~~~A~~~l~~l-g~~~~~~~~v~~LsiaqrQ~ 153 (500)
T COG1129 80 ALAAGIATVHQELSLVPNLSV-----AENIFLGREPTRRFGLIDRKAMRRRARELLARL-GLDIDPDTLVGDLSIAQRQM 153 (500)
T ss_pred HHhCCcEEEeechhccCCccH-----HHHhhcccccccCCCccCHHHHHHHHHHHHHHc-CCCCChhhhhhhCCHHHHHH
Confidence 456899999995444999999 9999988762 345677888 67 77544899999999 99999
Q ss_pred HHHH---------hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCCcccccCcccccccC
Q 001709 833 PALS---------LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCPYVMPGAVSASLSWG 903 (1022)
Q Consensus 833 vaIA---------LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~~V~~~~~~a~~l~~ 903 (1022)
|+|| ||||||||+ |+.++...+...+ +.+++..-.+++|. |-.+|+..++|
T Consensus 154 VeIArAl~~~arllIlDEPTaa-------------Lt~~E~~~Lf~~i-r~Lk~~Gv~ii~IS------Hrl~Ei~~i~D 213 (500)
T COG1129 154 VEIARALSFDARVLILDEPTAA-------------LTVKETERLFDLI-RRLKAQGVAIIYIS------HRLDEVFEIAD 213 (500)
T ss_pred HHHHHHHhcCCCEEEEcCCccc-------------CCHHHHHHHHHHH-HHHHhCCCEEEEEc------CcHHHHHHhcC
Confidence 9999 999999997 4445544444333 44455544444443 44444444444
Q ss_pred CCC
Q 001709 904 ASG 906 (1022)
Q Consensus 904 ~~~ 906 (1022)
|+.
T Consensus 214 rit 216 (500)
T COG1129 214 RIT 216 (500)
T ss_pred EEE
Confidence 433
No 224
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.92 E-value=2.3e-25 Score=227.18 Aligned_cols=196 Identities=15% Similarity=0.171 Sum_probs=146.9
Q ss_pred cccccCceeEEEEecCCCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc-------
Q 001709 694 FIRPEGLSDVFIFCTSDFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD------- 763 (1022)
Q Consensus 694 ~i~~~~l~~~~~~~~~~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~------- 763 (1022)
.+.++++.+.| +...+|++|||+.+ ++.|||.|||||||+||||+=|. +|+.|.|.++|..+
T Consensus 6 ~l~v~dlHK~~-----G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE---~P~~G~I~v~geei~~k~~~~ 77 (256)
T COG4598 6 ALEVEDLHKRY-----GEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLE---KPSAGSIRVNGEEIRLKRDKD 77 (256)
T ss_pred ceehhHHHhhc-----ccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhc---CCCCceEEECCeEEEeeeCCC
Confidence 35556666633 67789999999998 99999999999999999999999 99999999995321
Q ss_pred ----------hhhhcCceEEEcCCCCC-CccccccccchHHHHhcccc--------chHHHHHHHH-HhcCCccccCCCc
Q 001709 764 ----------QEGIAGGLCYCDSAGVN-LQELTMEAARFKDEMWMGIR--------DLSRKTDLIV-LVHNLSHKIPRYN 823 (1022)
Q Consensus 764 ----------~~~lr~~IGyV~Q~~~~-~~~lTV~~~~~~ENI~~g~~--------~~~~~v~~~L-~v~gL~~~~~r~~ 823 (1022)
...+|.++||||| ..+ +.+||| .||+.-..- +..++++.+| ++ |+.+..+.||
T Consensus 78 G~l~~ad~~q~~r~Rs~L~mVFQ-~FNLWsHmtv-----LeNViEaPvhVLg~~k~ea~e~Ae~~L~kV-Gi~ek~~~YP 150 (256)
T COG4598 78 GQLKPADKRQLQRLRTRLGMVFQ-HFNLWSHMTV-----LENVIEAPVHVLGVSKAEAIERAEKYLAKV-GIAEKADAYP 150 (256)
T ss_pred CCeeeCCHHHHHHHHHHhhHhhh-hcchhHHHHH-----HHHHHhcchHhhcCCHHHHHHHHHHHHHHh-CchhhhhcCc
Confidence 2356788999999 555 899999 999865432 2456788888 99 9999999999
Q ss_pred CCch-HHHHHHHHH---------hhhccccCCChhHH-HHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEE-ecCCcc
Q 001709 824 YSSA-SGQQQPALS---------LLLNEAKSLGIPWV-LAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVI-NSCPYV 891 (1022)
Q Consensus 824 ~~LS-GqrQRvaIA---------LLLDEPTSad~~~v-~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv-~~~~~V 891 (1022)
..|| |||||++|| +|+|||||+.+|++ -+++ -+++.+.+...|.++| |...+.
T Consensus 151 ~~LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVL---------------kv~~~LAeEgrTMv~VTHEM~FA 215 (256)
T COG4598 151 AHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVL---------------KVMQDLAEEGRTMVVVTHEMGFA 215 (256)
T ss_pred cccCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHH---------------HHHHHHHHhCCeEEEEeeehhHH
Confidence 9999 999999999 99999999855542 2222 2334555665666666 445555
Q ss_pred cccCcccccccCCCCCCCCCCCCCceeeecc
Q 001709 892 MPGAVSASLSWGASGGDSDGRSGAQKLLHAP 922 (1022)
Q Consensus 892 ~~~~~~a~~l~~~~~~~~~~~~~~~~i~~~p 922 (1022)
-+-..+++||-.-... -.+++..++-.|
T Consensus 216 R~Vss~v~fLh~G~iE---E~G~P~qvf~nP 243 (256)
T COG4598 216 RDVSSHVIFLHQGKIE---EEGPPEQVFGNP 243 (256)
T ss_pred HhhhhheEEeecceec---ccCChHHHhcCC
Confidence 5666777777663332 245555554444
No 225
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.92 E-value=1.7e-25 Score=247.60 Aligned_cols=151 Identities=18% Similarity=0.143 Sum_probs=118.8
Q ss_pred EEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc--hhhhcCceEEEcCCCCCCccccccccchHHHHhcccc----
Q 001709 727 LLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD--QEGIAGGLCYCDSAGVNLQELTMEAARFKDEMWMGIR---- 800 (1022)
Q Consensus 727 LlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~--~~~lr~~IGyV~Q~~~~~~~lTV~~~~~~ENI~~g~~---- 800 (1022)
|+||||||||||||+|+|++ +|++|+|.++|.++ ....+++||||||+...|+++|| +||+.|+..
T Consensus 1 l~G~nGsGKSTLl~~iaGl~---~p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv-----~enl~~~~~~~~~ 72 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFE---QPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTV-----EENVAFGLKMRKV 72 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCC---CCCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcH-----HHHHHHHHhhcCC
Confidence 68999999999999999999 99999999998765 22346789999995555888999 999998643
Q ss_pred c---hHHHHHHHH-HhcCCccccCCCcCCch-HHHHHHHHH---------hhhccccCCChhHHHHHhhhhcccHHHHHH
Q 001709 801 D---LSRKTDLIV-LVHNLSHKIPRYNYSSA-SGQQQPALS---------LLLNEAKSLGIPWVLAITNKFSVSAHQQRA 866 (1022)
Q Consensus 801 ~---~~~~v~~~L-~v~gL~~~~~r~~~~LS-GqrQRvaIA---------LLLDEPTSad~~~v~~I~~~~~ld~~~~~~ 866 (1022)
. ..+++++++ .+ +|.++.++++.+|| |||||++|| |||||||++ +|...+..
T Consensus 73 ~~~~~~~~~~~~l~~~-~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~-------------LD~~~~~~ 138 (325)
T TIGR01187 73 PRAEIKPRVLEALRLV-QLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSA-------------LDKKLRDQ 138 (325)
T ss_pred CHHHHHHHHHHHHHHc-CCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCcc-------------CCHHHHHH
Confidence 1 235677888 77 99999999999999 999999999 999999997 77777777
Q ss_pred HHHHHHHHHHhCCCeEEEEecCCcccccCcccccccCCC
Q 001709 867 AIDAVMQAYQASPSTTEVINSCPYVMPGAVSASLSWGAS 905 (1022)
Q Consensus 867 ~i~~ll~~~~~t~~~~vVv~~~~~V~~~~~~a~~l~~~~ 905 (1022)
+...+.+..++...++++++ |..+++..+++++
T Consensus 139 l~~~l~~l~~~~g~tiiivT------Hd~~e~~~~~d~i 171 (325)
T TIGR01187 139 MQLELKTIQEQLGITFVFVT------HDQEEAMTMSDRI 171 (325)
T ss_pred HHHHHHHHHHhcCCEEEEEe------CCHHHHHHhCCEE
Confidence 77777655444444666665 4444444444444
No 226
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.92 E-value=1.7e-24 Score=230.82 Aligned_cols=156 Identities=12% Similarity=0.115 Sum_probs=120.6
Q ss_pred CeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEcccc-----c----hhh----hcCceEEE
Q 001709 711 FTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEAD-----D----QEG----IAGGLCYC 774 (1022)
Q Consensus 711 ~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~-----~----~~~----lr~~IGyV 774 (1022)
.+++|+++||+++ +++|+||||||||||+|+|+|++ +|++|+|.+++.+ + ... .++.++||
T Consensus 18 ~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~---~p~~G~i~~~g~~~~~~~i~~~~~~~~~~~~~~~i~~v 94 (258)
T PRK11701 18 PRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARL---APDAGEVHYRMRDGQLRDLYALSEAERRRLLRTEWGFV 94 (258)
T ss_pred CceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCC---CCCCCEEEECCccccccccccCCHHHHHHHhhcceEEE
Confidence 3579999999998 99999999999999999999999 9999999999865 3 111 25679999
Q ss_pred cCCCC-C-CccccccccchHHHHhccc-----cc---hHHHHHHHH-HhcCCc-cccCCCcCCch-HHHHHHHHH-----
Q 001709 775 DSAGV-N-LQELTMEAARFKDEMWMGI-----RD---LSRKTDLIV-LVHNLS-HKIPRYNYSSA-SGQQQPALS----- 836 (1022)
Q Consensus 775 ~Q~~~-~-~~~lTV~~~~~~ENI~~g~-----~~---~~~~v~~~L-~v~gL~-~~~~r~~~~LS-GqrQRvaIA----- 836 (1022)
+|+.. . ++.+|+ .+|+.+.. .. ...++.+++ .+ ++. +..++.+.+|| |||||++||
T Consensus 95 ~q~~~~~~~~~~~~-----~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~~LS~Gq~qrl~laral~~ 168 (258)
T PRK11701 95 HQHPRDGLRMQVSA-----GGNIGERLMAVGARHYGDIRATAGDWLERV-EIDAARIDDLPTTFSGGMQQRLQIARNLVT 168 (258)
T ss_pred eeCcccccCccccH-----HHHHHHHHHHhccCcHHHHHHHHHHHHHHc-CCChhHHhCCCccCCHHHHHHHHHHHHHhc
Confidence 99543 2 566788 88876421 11 245567778 77 887 47899999999 999999999
Q ss_pred ----hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecC
Q 001709 837 ----LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSC 888 (1022)
Q Consensus 837 ----LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~ 888 (1022)
|||||||++ +|...+..+...+.+.......++++++|.
T Consensus 169 ~p~llllDEPt~~-------------LD~~~~~~l~~~l~~~~~~~~~tii~isH~ 211 (258)
T PRK11701 169 HPRLVFMDEPTGG-------------LDVSVQARLLDLLRGLVRELGLAVVIVTHD 211 (258)
T ss_pred CCCEEEEcCCccc-------------CCHHHHHHHHHHHHHHHHhcCcEEEEEeCC
Confidence 999999997 677777777666654433334466666533
No 227
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.92 E-value=1.8e-24 Score=225.14 Aligned_cols=154 Identities=17% Similarity=0.164 Sum_probs=120.0
Q ss_pred eeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEcc--c--cc----hh---hh-cCceEEEcC
Q 001709 712 TTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAE--A--DD----QE---GI-AGGLCYCDS 776 (1022)
Q Consensus 712 ~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg--~--~~----~~---~l-r~~IGyV~Q 776 (1022)
.++|+||||+|+ +++|+||||||||||+++|+|++ +|++|+|.+++ . ++ .. .. ++++||++|
T Consensus 21 ~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~---~~~~G~i~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q 97 (224)
T TIGR02324 21 LPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANY---LPDSGRILVRHEGAWVDLAQASPREVLEVRRKTIGYVSQ 97 (224)
T ss_pred eEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCC---CCCCCeEEEecCCCccchhhcCHHHHHHHHhcceEEEec
Confidence 479999999998 99999999999999999999999 99999999983 2 32 11 12 457999999
Q ss_pred CCCCCccccccccchHHHHhcccc----c---hHHHHHHHH-HhcCCcc-ccCCCcCCch-HHHHHHHHH---------h
Q 001709 777 AGVNLQELTMEAARFKDEMWMGIR----D---LSRKTDLIV-LVHNLSH-KIPRYNYSSA-SGQQQPALS---------L 837 (1022)
Q Consensus 777 ~~~~~~~lTV~~~~~~ENI~~g~~----~---~~~~v~~~L-~v~gL~~-~~~r~~~~LS-GqrQRvaIA---------L 837 (1022)
+...++.+|+ .||+.+... . ..+++.+++ .+ ||.+ ..++++.+|| |||||++|| |
T Consensus 98 ~~~~~~~~tv-----~e~l~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~~LS~G~~qrl~laral~~~p~ll 171 (224)
T TIGR02324 98 FLRVIPRVSA-----LEVVAEPLLERGVPREAARARARELLARL-NIPERLWHLPPATFSGGEQQRVNIARGFIADYPIL 171 (224)
T ss_pred ccccCCCccH-----HHHHHHHHHHcCCCHHHHHHHHHHHHHHc-CCchhhhhCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 5444888999 999876432 1 234667778 77 9976 4588999999 999999999 9
Q ss_pred hhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecC
Q 001709 838 LLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSC 888 (1022)
Q Consensus 838 LLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~ 888 (1022)
||||||++ +|...+..+...+.+ +.....++++++|.
T Consensus 172 llDEPt~~-------------LD~~~~~~l~~~l~~-~~~~g~tii~vsH~ 208 (224)
T TIGR02324 172 LLDEPTAS-------------LDAANRQVVVELIAE-AKARGAALIGIFHD 208 (224)
T ss_pred EEcCCccc-------------CCHHHHHHHHHHHHH-HHhcCCEEEEEeCC
Confidence 99999997 777777777765544 44444456666533
No 228
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=1.3e-24 Score=231.83 Aligned_cols=151 Identities=16% Similarity=0.197 Sum_probs=118.6
Q ss_pred CeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCC-----CceEEEEccccc------hhhhcCceEEEcC
Q 001709 711 FTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRT-----INSGNLDAEADD------QEGIAGGLCYCDS 776 (1022)
Q Consensus 711 ~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~P-----tsG~I~idg~~~------~~~lr~~IGyV~Q 776 (1022)
.+++|+||||+|+ +++|+|+||||||||+|+|+|++ +| ++|+|.++|.++ ....++.+||+||
T Consensus 24 ~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~---~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q 100 (258)
T PRK14268 24 EKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMN---DLIKNCRIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQ 100 (258)
T ss_pred CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC---CcccCCCcceEEEECCEEcccccchHHHHhhhEEEEec
Confidence 4679999999998 99999999999999999999998 75 899999998654 1235678999999
Q ss_pred CCCCCccccccccchHHHHhcccc----c---hHHHHHHHH-HhcCC----ccccCCCcCCch-HHHHHHHHH-------
Q 001709 777 AGVNLQELTMEAARFKDEMWMGIR----D---LSRKTDLIV-LVHNL----SHKIPRYNYSSA-SGQQQPALS------- 836 (1022)
Q Consensus 777 ~~~~~~~lTV~~~~~~ENI~~g~~----~---~~~~v~~~L-~v~gL----~~~~~r~~~~LS-GqrQRvaIA------- 836 (1022)
+...++ +|+ +||+.++.. . ..+++.+++ .+ ++ .+..++++.+|| |||||++||
T Consensus 101 ~~~~~~-~tv-----~enl~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p 173 (258)
T PRK14268 101 KPNPFP-MSI-----YDNVAYGPRIHGANKKDLDGVVENALRSA-ALWDETSDRLKSPALSLSGGQQQRLCIARTLAVKP 173 (258)
T ss_pred CCccCc-ccH-----HHHHHHHHHHcCCCHHHHHHHHHHHHHHc-CCCcchhhhhcCChhhCCHHHHHHHHHHHHHHcCC
Confidence 544466 899 999987532 1 234567777 66 77 356789999999 999999999
Q ss_pred --hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEe
Q 001709 837 --LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVIN 886 (1022)
Q Consensus 837 --LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~ 886 (1022)
|||||||++ +|...+..+...+.+. .. ..++++++
T Consensus 174 ~llllDEPt~~-------------LD~~~~~~l~~~l~~l-~~-~~tiiivs 210 (258)
T PRK14268 174 KIILFDEPTSA-------------LDPISTARIEDLIMNL-KK-DYTIVIVT 210 (258)
T ss_pred CEEEEeCCCcc-------------cCHHHHHHHHHHHHHH-hh-CCEEEEEE
Confidence 999999996 7777777766666543 33 34555555
No 229
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.92 E-value=1.3e-24 Score=251.65 Aligned_cols=154 Identities=18% Similarity=0.262 Sum_probs=121.4
Q ss_pred CCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc-----hhhhcCceEEEcCCCCCC
Q 001709 710 DFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD-----QEGIAGGLCYCDSAGVNL 781 (1022)
Q Consensus 710 ~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~-----~~~lr~~IGyV~Q~~~~~ 781 (1022)
+++++|+||||+|+ +++|+||||||||||+|+|+|++ +|++|+|.++|.++ ....+++|+||||+...+
T Consensus 9 ~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~---~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~ 85 (491)
T PRK10982 9 PGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIY---QKDSGSILFQGKEIDFKSSKEALENGISMVHQELNLV 85 (491)
T ss_pred CCEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCC---CCCceEEEECCEECCCCCHHHHHhCCEEEEecccccc
Confidence 34679999999998 99999999999999999999999 99999999998654 123467899999954447
Q ss_pred ccccccccchHHHHhcccc-------c---hHHHHHHHH-HhcCCccccCCCcCCch-HHHHHHHHH---------hhhc
Q 001709 782 QELTMEAARFKDEMWMGIR-------D---LSRKTDLIV-LVHNLSHKIPRYNYSSA-SGQQQPALS---------LLLN 840 (1022)
Q Consensus 782 ~~lTV~~~~~~ENI~~g~~-------~---~~~~v~~~L-~v~gL~~~~~r~~~~LS-GqrQRvaIA---------LLLD 840 (1022)
+.+|| +||+.++.. . ..+++++++ .+ ++.+..++++.+|| ||||||+|| ||||
T Consensus 86 ~~~tv-----~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p~lllLD 159 (491)
T PRK10982 86 LQRSV-----MDNMWLGRYPTKGMFVDQDKMYRDTKAIFDEL-DIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMD 159 (491)
T ss_pred cCCCH-----HHHhhcccccccccccCHHHHHHHHHHHHHHc-CCCCCccCchhhCCHHHHHHHHHHHHHHhCCCEEEEe
Confidence 88999 999987532 1 234577788 77 99988999999999 999999999 9999
Q ss_pred cccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEe
Q 001709 841 EAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVIN 886 (1022)
Q Consensus 841 EPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~ 886 (1022)
|||++ +|...+..+...+.+ +.....++++++
T Consensus 160 EPt~~-------------LD~~~~~~l~~~l~~-l~~~g~tvii~t 191 (491)
T PRK10982 160 EPTSS-------------LTEKEVNHLFTIIRK-LKERGCGIVYIS 191 (491)
T ss_pred CCCCC-------------CCHHHHHHHHHHHHH-HHhCCCEEEEEe
Confidence 99997 555555555554433 333333444443
No 230
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.92 E-value=8.8e-25 Score=262.76 Aligned_cols=180 Identities=12% Similarity=0.085 Sum_probs=137.7
Q ss_pred ceeEEEEecCCCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc----hhhhcCceE
Q 001709 700 LSDVFIFCTSDFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD----QEGIAGGLC 772 (1022)
Q Consensus 700 l~~~~~~~~~~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~----~~~lr~~IG 772 (1022)
++++++.|..+.+++|+|+||+++ .++|+|+||||||||+|+|+|++ +|++|+|++||.++ ...+|+.||
T Consensus 458 ~~~vsf~y~~~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~---~p~~G~I~idg~~i~~~~~~~~r~~i~ 534 (694)
T TIGR01846 458 FENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLY---TPQHGQVLVDGVDLAIADPAWLRRQMG 534 (694)
T ss_pred EEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCC---CCCCceEEECCEehhhCCHHHHHHhCe
Confidence 566666665445679999999998 99999999999999999999999 99999999998664 567899999
Q ss_pred EEcCCCCCCccccccccchHHHHhccccc-hHHHHHHHH-----------HhcCCccccCCCcCCch-HHHHHHHHH---
Q 001709 773 YCDSAGVNLQELTMEAARFKDEMWMGIRD-LSRKTDLIV-----------LVHNLSHKIPRYNYSSA-SGQQQPALS--- 836 (1022)
Q Consensus 773 yV~Q~~~~~~~lTV~~~~~~ENI~~g~~~-~~~~v~~~L-----------~v~gL~~~~~r~~~~LS-GqrQRvaIA--- 836 (1022)
||+| +..++..|+ +|||.++..+ ..+.+.+++ +..|++...++...+|| |||||++||
T Consensus 535 ~v~q-~~~lf~~ti-----~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARal 608 (694)
T TIGR01846 535 VVLQ-ENVLFSRSI-----RDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARAL 608 (694)
T ss_pred EEcc-CCeehhhhH-----HHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHH
Confidence 9999 555555899 9999997542 233333333 22356666777788999 999999999
Q ss_pred ------hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCCcccccCcccccccC
Q 001709 837 ------LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCPYVMPGAVSASLSWG 903 (1022)
Q Consensus 837 ------LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~~V~~~~~~a~~l~~ 903 (1022)
||||||||+ +|..+...+...+.+. . ...++++++|-...+..+|..+.+.+
T Consensus 609 l~~~~ililDEpts~-------------LD~~~~~~i~~~l~~~-~-~~~t~i~itH~~~~~~~~d~ii~l~~ 666 (694)
T TIGR01846 609 VGNPRILIFDEATSA-------------LDYESEALIMRNMREI-C-RGRTVIIIAHRLSTVRACDRIIVLEK 666 (694)
T ss_pred HhCCCEEEEECCCcC-------------CCHHHHHHHHHHHHHH-h-CCCEEEEEeCChHHHHhCCEEEEEeC
Confidence 999999997 7777777777666443 2 23466777665555556666665544
No 231
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.92 E-value=3.3e-24 Score=219.71 Aligned_cols=154 Identities=14% Similarity=0.112 Sum_probs=120.1
Q ss_pred eeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc-hhhhcCceEEEcCCCCCCcccccc
Q 001709 712 TTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD-QEGIAGGLCYCDSAGVNLQELTME 787 (1022)
Q Consensus 712 ~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~-~~~lr~~IGyV~Q~~~~~~~lTV~ 787 (1022)
+.+++ |||+|+ +++|+|+||||||||+|+|+|++ +|++|+|.+++.++ ... ++.++|++|+...++.+|+
T Consensus 14 ~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~---~~~~G~i~~~g~~i~~~~-~~~~~~~~~~~~~~~~~tv- 87 (195)
T PRK13541 14 KNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIM---QPSSGNIYYKNCNINNIA-KPYCTYIGHNLGLKLEMTV- 87 (195)
T ss_pred cEEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCC---CCCCcEEEECCcccChhh-hhhEEeccCCcCCCccCCH-
Confidence 44555 999998 99999999999999999999999 99999999998776 222 4569999995444677999
Q ss_pred ccchHHHHhcccc--chHHHHHHHH-HhcCCccccCCCcCCch-HHHHHHHHH---------hhhccccCCChhHHHHHh
Q 001709 788 AARFKDEMWMGIR--DLSRKTDLIV-LVHNLSHKIPRYNYSSA-SGQQQPALS---------LLLNEAKSLGIPWVLAIT 854 (1022)
Q Consensus 788 ~~~~~ENI~~g~~--~~~~~v~~~L-~v~gL~~~~~r~~~~LS-GqrQRvaIA---------LLLDEPTSad~~~v~~I~ 854 (1022)
.||+.+... ...+++.+++ .+ ++.+..++++.+|| |||||++|| |||||||++
T Consensus 88 ----~~~l~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~lllDEP~~~--------- 153 (195)
T PRK13541 88 ----FENLKFWSEIYNSAETLYAAIHYF-KLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETN--------- 153 (195)
T ss_pred ----HHHHHHHHHhcccHHHHHHHHHHc-CCHhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCccc---------
Confidence 999987543 2345677777 77 99888999999999 999999999 999999997
Q ss_pred hhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCCc
Q 001709 855 NKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCPY 890 (1022)
Q Consensus 855 ~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~~ 890 (1022)
+|...+..+...+. .....+.++++++|...
T Consensus 154 ----LD~~~~~~l~~~l~-~~~~~~~tiii~sh~~~ 184 (195)
T PRK13541 154 ----LSKENRDLLNNLIV-MKANSGGIVLLSSHLES 184 (195)
T ss_pred ----CCHHHHHHHHHHHH-HHHhCCCEEEEEeCCcc
Confidence 66666666555553 33344445555554333
No 232
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.92 E-value=1.4e-24 Score=258.72 Aligned_cols=168 Identities=13% Similarity=0.111 Sum_probs=131.5
Q ss_pred eeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc-h------hhhcCceEEEcCCCC--
Q 001709 712 TTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD-Q------EGIAGGLCYCDSAGV-- 779 (1022)
Q Consensus 712 ~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~-~------~~lr~~IGyV~Q~~~-- 779 (1022)
.++|+||||+|+ +++|+|+||||||||+|+|+|++ +|++|+|.++|.++ . ..++++|+||||+..
T Consensus 337 ~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~---~p~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~ 413 (623)
T PRK10261 337 VHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLV---ESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYAS 413 (623)
T ss_pred eEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCC---CCCCcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhh
Confidence 579999999999 99999999999999999999999 99999999998654 1 124678999999542
Q ss_pred CCccccccccchHHHHhcccc--------chHHHHHHHH-HhcCCc-cccCCCcCCch-HHHHHHHHH---------hhh
Q 001709 780 NLQELTMEAARFKDEMWMGIR--------DLSRKTDLIV-LVHNLS-HKIPRYNYSSA-SGQQQPALS---------LLL 839 (1022)
Q Consensus 780 ~~~~lTV~~~~~~ENI~~g~~--------~~~~~v~~~L-~v~gL~-~~~~r~~~~LS-GqrQRvaIA---------LLL 839 (1022)
.++.+|| .||+.++.. ...+++.+++ .+ ||. +..++++.+|| ||||||+|| |||
T Consensus 414 l~~~~tv-----~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~-gL~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~llll 487 (623)
T PRK10261 414 LDPRQTV-----GDSIMEPLRVHGLLPGKAAAARVAWLLERV-GLLPEHAWRYPHEFSGGQRQRICIARALALNPKVIIA 487 (623)
T ss_pred cCCCCCH-----HHHHHHHHHHcCCCCHHHHHHHHHHHHHHc-CCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 3778999 999876431 1235677888 88 995 67899999999 999999999 999
Q ss_pred ccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCCcccccCcccccccCCCCC
Q 001709 840 NEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCPYVMPGAVSASLSWGASGG 907 (1022)
Q Consensus 840 DEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~~V~~~~~~a~~l~~~~~~ 907 (1022)
||||++ +|...+..+...+.+..++...++++++ |+.+.+..+++++.+
T Consensus 488 DEPts~-------------LD~~~~~~i~~ll~~l~~~~g~tvi~is------Hdl~~v~~~~dri~v 536 (623)
T PRK10261 488 DEAVSA-------------LDVSIRGQIINLLLDLQRDFGIAYLFIS------HDMAVVERISHRVAV 536 (623)
T ss_pred eCCccc-------------CCHHHHHHHHHHHHHHHHhcCCEEEEEe------CCHHHHHHhCCEEEE
Confidence 999997 7777777777666554343344666665 555555555555544
No 233
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.92 E-value=1.7e-24 Score=227.40 Aligned_cols=151 Identities=19% Similarity=0.203 Sum_probs=113.8
Q ss_pred eeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc----hhhhcCceEEEcCCCCCCccc
Q 001709 712 TTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD----QEGIAGGLCYCDSAGVNLQEL 784 (1022)
Q Consensus 712 ~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~----~~~lr~~IGyV~Q~~~~~~~l 784 (1022)
+++|+||||+++ +++|+||||||||||+++|+|++ +|++|+|.++|.++ ....++.++|++|+...++ .
T Consensus 16 ~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~---~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~ 91 (238)
T cd03249 16 VPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFY---DPTSGEILLDGVDIRDLNLRWLRSQIGLVSQEPVLFD-G 91 (238)
T ss_pred ccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccC---CCCCCEEEECCEehhhcCHHHHHhhEEEECCchhhhh-h
Confidence 569999999998 99999999999999999999999 99999999998654 2344678999999433354 7
Q ss_pred cccccchHHHHhccccc-hHHHHHHHH-Hh----------cCCccccCCCcCCch-HHHHHHHHH---------hhhccc
Q 001709 785 TMEAARFKDEMWMGIRD-LSRKTDLIV-LV----------HNLSHKIPRYNYSSA-SGQQQPALS---------LLLNEA 842 (1022)
Q Consensus 785 TV~~~~~~ENI~~g~~~-~~~~v~~~L-~v----------~gL~~~~~r~~~~LS-GqrQRvaIA---------LLLDEP 842 (1022)
|+ +||+.++... ..+.....+ .. .++.+..++++.+|| |||||++|| ||||||
T Consensus 92 tv-----~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP 166 (238)
T cd03249 92 TI-----AENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEA 166 (238)
T ss_pred hH-----HHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCEEEEeCc
Confidence 99 9999886432 112222222 11 134556778899999 999999999 999999
Q ss_pred cCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEe
Q 001709 843 KSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVIN 886 (1022)
Q Consensus 843 TSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~ 886 (1022)
|++ +|...+..+...+.+. . ...++++++
T Consensus 167 ~~g-------------LD~~~~~~l~~~l~~~-~-~g~~vi~~s 195 (238)
T cd03249 167 TSA-------------LDAESEKLVQEALDRA-M-KGRTTIVIA 195 (238)
T ss_pred ccc-------------CCHHHHHHHHHHHHHh-c-CCCEEEEEe
Confidence 996 7777777776666443 3 333555554
No 234
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=1.7e-24 Score=229.63 Aligned_cols=167 Identities=12% Similarity=0.141 Sum_probs=124.1
Q ss_pred CeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCC--C---CceEEEEccccc------hhhhcCceEEEcC
Q 001709 711 FTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVR--T---INSGNLDAEADD------QEGIAGGLCYCDS 776 (1022)
Q Consensus 711 ~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~--P---tsG~I~idg~~~------~~~lr~~IGyV~Q 776 (1022)
..++|+|+||+|+ +++|+|+||||||||+++|+|++ + | ++|+|+++|.++ ...+++.|+|+||
T Consensus 16 ~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~---~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q 92 (252)
T PRK14256 16 KNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMH---DLVPSARVTGKILLDDTDIYDRGVDPVSIRRRVGMVFQ 92 (252)
T ss_pred CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcc---cCCCCCCCceEEEECCEEcccccCChHHhhccEEEEec
Confidence 4679999999998 99999999999999999999998 6 3 689999998654 1245778999999
Q ss_pred CCCCCccccccccchHHHHhcccc-----c---hHHHHHHHH-HhcCCc----cccCCCcCCch-HHHHHHHHH------
Q 001709 777 AGVNLQELTMEAARFKDEMWMGIR-----D---LSRKTDLIV-LVHNLS----HKIPRYNYSSA-SGQQQPALS------ 836 (1022)
Q Consensus 777 ~~~~~~~lTV~~~~~~ENI~~g~~-----~---~~~~v~~~L-~v~gL~----~~~~r~~~~LS-GqrQRvaIA------ 836 (1022)
+...++.+|+ .||+.++.. . ..+++++++ .+ ++. +..++.+.+|| |||||++||
T Consensus 93 ~~~~~~~~tv-----~enl~~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~ 166 (252)
T PRK14256 93 KPNPFPAMSI-----YDNVIAGYKLNGRVNRSEADEIVESSLKRV-ALWDEVKDRLKSNAMELSGGQQQRLCIARTIAVK 166 (252)
T ss_pred CCCCCCcCcH-----HHHHHhHHHhcCCCCHHHHHHHHHHHHHHc-CCchhhhHHhhCCcCcCCHHHHHHHHHHHHHhcC
Confidence 5444777899 999986431 1 234567777 66 774 35678999999 999999999
Q ss_pred ---hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCC-cccccCcccccc
Q 001709 837 ---LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCP-YVMPGAVSASLS 901 (1022)
Q Consensus 837 ---LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~-~V~~~~~~a~~l 901 (1022)
|||||||++ +|...+..+...+.+ +.. ..++++++|.. .+...++..+++
T Consensus 167 p~llllDEP~~g-------------LD~~~~~~l~~~l~~-~~~-~~tiiivsH~~~~~~~~~d~i~~l 220 (252)
T PRK14256 167 PEVILMDEPASA-------------LDPISTLKIEELIEE-LKE-KYTIIIVTHNMQQAARVSDYTAFF 220 (252)
T ss_pred CCEEEEcCCccc-------------CCHHHHHHHHHHHHH-HHh-CCcEEEEECCHHHHHhhCCEEEEE
Confidence 999999997 677676666655543 433 34566665332 223334444433
No 235
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.92 E-value=1.3e-24 Score=253.20 Aligned_cols=172 Identities=18% Similarity=0.207 Sum_probs=125.7
Q ss_pred CCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEcc-----------------------cc-
Q 001709 710 DFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAE-----------------------AD- 762 (1022)
Q Consensus 710 ~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg-----------------------~~- 762 (1022)
+++++|+||||+++ +++|+||||||||||||+|+|++ .++|++|+|.+++ .+
T Consensus 11 ~~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~-~~~p~~G~i~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~ 89 (520)
T TIGR03269 11 DGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMD-QYEPTSGRIIYHVALCEKCGYVERPSKVGEPCPVCGGTL 89 (520)
T ss_pred CCeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcc-cCCCCceEEEEeccccccccccccccccccccccccccc
Confidence 34679999999999 99999999999999999999994 0159999999862 11
Q ss_pred ------c-------hhhhcCceEEEcCCCC-CCccccccccchHHHHhcccc-------chHHHHHHHH-HhcCCccccC
Q 001709 763 ------D-------QEGIAGGLCYCDSAGV-NLQELTMEAARFKDEMWMGIR-------DLSRKTDLIV-LVHNLSHKIP 820 (1022)
Q Consensus 763 ------~-------~~~lr~~IGyV~Q~~~-~~~~lTV~~~~~~ENI~~g~~-------~~~~~v~~~L-~v~gL~~~~~ 820 (1022)
. ...+++.+|||||+.. .++.+|+ +||+.++.. ...+++.+++ .+ ||.+..+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv-----~~~l~~~~~~~~~~~~~~~~~~~~~l~~~-gl~~~~~ 163 (520)
T TIGR03269 90 EPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTV-----LDNVLEALEEIGYEGKEAVGRAVDLIEMV-QLSHRIT 163 (520)
T ss_pred cccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCH-----HHHHHHHHHHcCCCHHHHHHHHHHHHHHc-CChhhhh
Confidence 0 1224567999999523 4777899 999987532 1245678888 88 9999999
Q ss_pred CCcCCch-HHHHHHHHH---------hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCCc
Q 001709 821 RYNYSSA-SGQQQPALS---------LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCPY 890 (1022)
Q Consensus 821 r~~~~LS-GqrQRvaIA---------LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~~ 890 (1022)
+++.+|| ||||||+|| |||||||++ +|...+..+...+.+..+....++++++|...
T Consensus 164 ~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~-------------LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~ 230 (520)
T TIGR03269 164 HIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGT-------------LDPQTAKLVHNALEEAVKASGISMVLTSHWPE 230 (520)
T ss_pred cCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCccc-------------CCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH
Confidence 9999999 999999999 999999997 66666666655444332333345555544333
Q ss_pred c-cccCcccccc
Q 001709 891 V-MPGAVSASLS 901 (1022)
Q Consensus 891 V-~~~~~~a~~l 901 (1022)
. ...++..+++
T Consensus 231 ~~~~~~d~i~~l 242 (520)
T TIGR03269 231 VIEDLSDKAIWL 242 (520)
T ss_pred HHHHhcCEEEEE
Confidence 2 2334444444
No 236
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.92 E-value=1.3e-24 Score=255.92 Aligned_cols=178 Identities=13% Similarity=0.134 Sum_probs=133.6
Q ss_pred ceeEEEEecCCCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc----hhhhcCceE
Q 001709 700 LSDVFIFCTSDFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD----QEGIAGGLC 772 (1022)
Q Consensus 700 l~~~~~~~~~~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~----~~~lr~~IG 772 (1022)
++++.+.|..+..++|+|+||+++ +++|+||||||||||+++|+|++ +|++|+|.+||.++ ...+|+.|+
T Consensus 316 ~~~v~~~y~~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~---~p~~G~i~~~g~~~~~~~~~~~~~~i~ 392 (569)
T PRK10789 316 VNIRQFTYPQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHF---DVSEGDIRFHDIPLTKLQLDSWRSRLA 392 (569)
T ss_pred EEEEEEECCCCCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhccc---CCCCCEEEECCEEHhhCCHHHHHhheE
Confidence 556666655444679999999999 99999999999999999999999 99999999998664 457789999
Q ss_pred EEcCCCCCCccccccccchHHHHhccccc-hHHHHHHHH-H----------hcCCccccCCCcCCch-HHHHHHHHH---
Q 001709 773 YCDSAGVNLQELTMEAARFKDEMWMGIRD-LSRKTDLIV-L----------VHNLSHKIPRYNYSSA-SGQQQPALS--- 836 (1022)
Q Consensus 773 yV~Q~~~~~~~lTV~~~~~~ENI~~g~~~-~~~~v~~~L-~----------v~gL~~~~~r~~~~LS-GqrQRvaIA--- 836 (1022)
||+| ++.++..|+ +|||.++..+ .++.+.+++ . .+|++...++....|| |||||++||
T Consensus 393 ~v~q-~~~lf~~ti-----~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARal 466 (569)
T PRK10789 393 VVSQ-TPFLFSDTV-----ANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARAL 466 (569)
T ss_pred EEcc-CCeeccccH-----HHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHH
Confidence 9999 455444799 9999998643 233333433 2 2345556677788999 999999999
Q ss_pred ------hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCCcccccCcccccc
Q 001709 837 ------LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCPYVMPGAVSASLS 901 (1022)
Q Consensus 837 ------LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~~V~~~~~~a~~l 901 (1022)
|||||||++ +|.++...+...+.+ +. ...++++++|-...+..+|..+.+
T Consensus 467 l~~~~illlDEpts~-------------LD~~~~~~i~~~l~~-~~-~~~tii~itH~~~~~~~~d~i~~l 522 (569)
T PRK10789 467 LLNAEILILDDALSA-------------VDGRTEHQILHNLRQ-WG-EGRTVIISAHRLSALTEASEILVM 522 (569)
T ss_pred hcCCCEEEEECcccc-------------CCHHHHHHHHHHHHH-Hh-CCCEEEEEecchhHHHcCCEEEEE
Confidence 999999997 777777777666544 32 335666666554444445555444
No 237
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=1.9e-24 Score=229.13 Aligned_cols=169 Identities=11% Similarity=0.162 Sum_probs=124.0
Q ss_pred CeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCC--CceEEEEccccc-h-----hhhcCceEEEcCCCC
Q 001709 711 FTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRT--INSGNLDAEADD-Q-----EGIAGGLCYCDSAGV 779 (1022)
Q Consensus 711 ~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~P--tsG~I~idg~~~-~-----~~lr~~IGyV~Q~~~ 779 (1022)
.+++|+||||+|+ +++|+||||||||||+|+|+|+....+| ++|+|.++|.++ . ...++.|+|+||+..
T Consensus 15 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~ 94 (250)
T PRK14245 15 DFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPN 94 (250)
T ss_pred CEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHHHHhhheEEEecCCc
Confidence 4679999999999 9999999999999999999997211154 589999998664 1 245678999999544
Q ss_pred CCccccccccchHHHHhcccc-----c---hHHHHHHHH-HhcCCc----cccCCCcCCch-HHHHHHHHH---------
Q 001709 780 NLQELTMEAARFKDEMWMGIR-----D---LSRKTDLIV-LVHNLS----HKIPRYNYSSA-SGQQQPALS--------- 836 (1022)
Q Consensus 780 ~~~~lTV~~~~~~ENI~~g~~-----~---~~~~v~~~L-~v~gL~----~~~~r~~~~LS-GqrQRvaIA--------- 836 (1022)
.++ .|+ .||+.++.. . ..+++++++ .+ ||. +..++++.+|| |||||++||
T Consensus 95 ~~~-~tv-----~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~l 167 (250)
T PRK14245 95 PFP-KSI-----FENVAYGLRVNGVKDNAFIRQRVEETLKGA-ALWDEVKDKLKESAFALSGGQQQRLCIARAMAVSPSV 167 (250)
T ss_pred cCc-ccH-----HHHHHHHHHHcCCCcHHHHHHHHHHHHHHc-CCCcchhhhhhCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 465 699 999987532 1 234567777 66 874 45789999999 999999999
Q ss_pred hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCCc-ccccCcccccc
Q 001709 837 LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCPY-VMPGAVSASLS 901 (1022)
Q Consensus 837 LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~~-V~~~~~~a~~l 901 (1022)
|||||||++ +|...+..+...+.+. .. ..++++++|... +...++..+.+
T Consensus 168 llLDEPt~~-------------LD~~~~~~l~~~l~~~-~~-~~tiiivtH~~~~~~~~~d~v~~l 218 (250)
T PRK14245 168 LLMDEPASA-------------LDPISTAKVEELIHEL-KK-DYTIVIVTHNMQQAARVSDKTAFF 218 (250)
T ss_pred EEEeCCCcc-------------CCHHHHHHHHHHHHHH-hc-CCeEEEEeCCHHHHHhhCCEEEEE
Confidence 999999997 7777777776666543 43 345566653332 33344444444
No 238
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.92 E-value=2.6e-24 Score=229.96 Aligned_cols=147 Identities=19% Similarity=0.148 Sum_probs=117.2
Q ss_pred CeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccchhhhcCceEEEcCCCCCCcc--cc
Q 001709 711 FTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADDQEGIAGGLCYCDSAGVNLQE--LT 785 (1022)
Q Consensus 711 ~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~~~~lr~~IGyV~Q~~~~~~~--lT 785 (1022)
..++|++|||+|+ +++|+||||||||||+|+|+|++ +|++|+|.+++ +..|+|++|+...++. .|
T Consensus 16 ~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~---~p~~G~i~~~~-------~~~i~~v~q~~~~~~~l~~~ 85 (251)
T PRK09544 16 QRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLV---APDEGVIKRNG-------KLRIGYVPQKLYLDTTLPLT 85 (251)
T ss_pred CceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC---CCCceEEEECC-------ccCEEEeccccccccccChh
Confidence 4579999999998 99999999999999999999999 99999999875 2469999995434443 47
Q ss_pred ccccchHHHHhccccchHHHHHHHH-HhcCCccccCCCcCCch-HHHHHHHHH---------hhhccccCCChhHHHHHh
Q 001709 786 MEAARFKDEMWMGIRDLSRKTDLIV-LVHNLSHKIPRYNYSSA-SGQQQPALS---------LLLNEAKSLGIPWVLAIT 854 (1022)
Q Consensus 786 V~~~~~~ENI~~g~~~~~~~v~~~L-~v~gL~~~~~r~~~~LS-GqrQRvaIA---------LLLDEPTSad~~~v~~I~ 854 (1022)
+ .+|+.+......+++.+++ .+ ||.+..++++.+|| |||||++|| |||||||++
T Consensus 86 ~-----~~~~~~~~~~~~~~~~~~l~~~-gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~--------- 150 (251)
T PRK09544 86 V-----NRFLRLRPGTKKEDILPALKRV-QAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQG--------- 150 (251)
T ss_pred H-----HHHHhccccccHHHHHHHHHHc-CChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcC---------
Confidence 7 8887654322345677888 77 99999999999999 999999999 999999997
Q ss_pred hhhcccHHHHHHHHHHHHHHHHhCCCeEEEEe
Q 001709 855 NKFSVSAHQQRAAIDAVMQAYQASPSTTEVIN 886 (1022)
Q Consensus 855 ~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~ 886 (1022)
+|...+..+...+.+..+....++++++
T Consensus 151 ----LD~~~~~~l~~~L~~~~~~~g~tiiivs 178 (251)
T PRK09544 151 ----VDVNGQVALYDLIDQLRRELDCAVLMVS 178 (251)
T ss_pred ----CCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 7777777776666544333244566665
No 239
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.92 E-value=9.4e-25 Score=229.02 Aligned_cols=151 Identities=15% Similarity=0.136 Sum_probs=118.1
Q ss_pred EEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCC----CceEEEEccccc-hhhh-cCceEEEcCCCCC--Cc
Q 001709 714 VFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRT----INSGNLDAEADD-QEGI-AGGLCYCDSAGVN--LQ 782 (1022)
Q Consensus 714 aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~P----tsG~I~idg~~~-~~~l-r~~IGyV~Q~~~~--~~ 782 (1022)
+|+||||+++ +++|+||||||||||+|+|+|++ +| ++|+|.++|.++ .... ++.|+|++|+... ++
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~---~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~ 77 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLL---PPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNP 77 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCC---CCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCc
Confidence 4789999999 99999999999999999999999 88 899999999776 2233 3689999995432 45
Q ss_pred cccccccchHHHHhcccc-----c--hHHHHHHHH-HhcCCc---cccCCCcCCch-HHHHHHHHH---------hhhcc
Q 001709 783 ELTMEAARFKDEMWMGIR-----D--LSRKTDLIV-LVHNLS---HKIPRYNYSSA-SGQQQPALS---------LLLNE 841 (1022)
Q Consensus 783 ~lTV~~~~~~ENI~~g~~-----~--~~~~v~~~L-~v~gL~---~~~~r~~~~LS-GqrQRvaIA---------LLLDE 841 (1022)
.+|+ .+|+.+... . ..+++.+++ .+ +|. +..++.+.+|| |||||++|| |||||
T Consensus 78 ~~t~-----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDE 151 (230)
T TIGR02770 78 LFTM-----GNHAIETLRSLGKLSKQARALILEALEAV-GLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADE 151 (230)
T ss_pred ccCH-----HHHHHHHHHHcCccHHHHHHHHHHHHHHc-CCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 6788 888765321 1 234577888 77 997 57899999999 999999999 99999
Q ss_pred ccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEe
Q 001709 842 AKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVIN 886 (1022)
Q Consensus 842 PTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~ 886 (1022)
||++ +|...+..+...+.+..++...++++++
T Consensus 152 Pt~~-------------LD~~~~~~l~~~l~~~~~~~~~tiii~s 183 (230)
T TIGR02770 152 PTTD-------------LDVVNQARVLKLLRELRQLFGTGILLIT 183 (230)
T ss_pred Cccc-------------cCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 9996 7777777777666544333334556665
No 240
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.92 E-value=2.2e-24 Score=228.38 Aligned_cols=151 Identities=15% Similarity=0.197 Sum_probs=117.3
Q ss_pred CeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCC-----CceEEEEccccc------hhhhcCceEEEcC
Q 001709 711 FTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRT-----INSGNLDAEADD------QEGIAGGLCYCDS 776 (1022)
Q Consensus 711 ~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~P-----tsG~I~idg~~~------~~~lr~~IGyV~Q 776 (1022)
.+++|+|+||+|+ +++|+||||||||||+++|+|++ +| ++|+|.++|.++ ....++.|+|++|
T Consensus 15 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~---~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q 91 (250)
T PRK14240 15 DFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMN---DLIPSVKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQ 91 (250)
T ss_pred CceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccc---cccCCCCCceEEEECCEEccccccchHHHhccEEEEec
Confidence 3579999999998 99999999999999999999997 53 799999998654 1245778999999
Q ss_pred CCCCCccccccccchHHHHhcccc-----c---hHHHHHHHH-HhcCCc----cccCCCcCCch-HHHHHHHHH------
Q 001709 777 AGVNLQELTMEAARFKDEMWMGIR-----D---LSRKTDLIV-LVHNLS----HKIPRYNYSSA-SGQQQPALS------ 836 (1022)
Q Consensus 777 ~~~~~~~lTV~~~~~~ENI~~g~~-----~---~~~~v~~~L-~v~gL~----~~~~r~~~~LS-GqrQRvaIA------ 836 (1022)
+...++ +|+ +||+.++.. . ..+++.+++ .+ ++. +..++++.+|| |||||++||
T Consensus 92 ~~~~~~-~t~-----~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~ 164 (250)
T PRK14240 92 QPNPFP-MSI-----YDNVAYGPRTHGIKDKKKLDEIVEKSLKGA-ALWDEVKDRLKKSALGLSGGQQQRLCIARALAVE 164 (250)
T ss_pred CCccCc-ccH-----HHHHHHHHHhcCCCCHHHHHHHHHHHHHHc-CCchhhHHHHhcCCCCCCHHHHHHHHHHHHHhcC
Confidence 543366 899 999987642 1 234566667 65 653 45689999999 999999999
Q ss_pred ---hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEe
Q 001709 837 ---LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVIN 886 (1022)
Q Consensus 837 ---LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~ 886 (1022)
|||||||++ +|...+..+...+.+ +.. ..++++++
T Consensus 165 p~llllDEP~~~-------------LD~~~~~~l~~~l~~-~~~-~~tiii~s 202 (250)
T PRK14240 165 PEVLLMDEPTSA-------------LDPISTLKIEELIQE-LKK-DYTIVIVT 202 (250)
T ss_pred CCEEEEeCCCcc-------------CCHHHHHHHHHHHHH-Hhc-CCeEEEEE
Confidence 999999997 777777776665544 443 34556555
No 241
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.92 E-value=1.5e-24 Score=237.68 Aligned_cols=173 Identities=14% Similarity=0.177 Sum_probs=133.5
Q ss_pred CeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCC-C----CceEEEEccccc----hh---hhc-CceEEE
Q 001709 711 FTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVR-T----INSGNLDAEADD----QE---GIA-GGLCYC 774 (1022)
Q Consensus 711 ~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~-P----tsG~I~idg~~~----~~---~lr-~~IGyV 774 (1022)
...|++||||+|+ ++||||.||||||||.+.|+||+ + | .+|+|.++|.++ .+ .+| +.|+||
T Consensus 17 ~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~ll---p~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mI 93 (316)
T COG0444 17 VVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLL---PKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMI 93 (316)
T ss_pred cEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhcc---CCCCCeEeeeEEEECCcccccCCHHHHHhhcCceEEEE
Confidence 4689999999998 99999999999999999999999 6 3 579999998765 22 233 579999
Q ss_pred cCCCCC--CccccccccchHHHHhcccc-----chHHHHHHHH-HhcCCcc---ccCCCcCCch-HHHHHHHHH------
Q 001709 775 DSAGVN--LQELTMEAARFKDEMWMGIR-----DLSRKTDLIV-LVHNLSH---KIPRYNYSSA-SGQQQPALS------ 836 (1022)
Q Consensus 775 ~Q~~~~--~~~lTV~~~~~~ENI~~g~~-----~~~~~v~~~L-~v~gL~~---~~~r~~~~LS-GqrQRvaIA------ 836 (1022)
||++.. -|-+|| +.|+.|-+..... +..+++.++| .| ||.+ ..+.||++|| ||+|||.||
T Consensus 94 fQ~p~~sLnPv~~I-g~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~V-gi~~~~~~~~~YPhelSGGMrQRV~IAmala~~ 171 (316)
T COG0444 94 FQDPMTSLNPVMTI-GDQIAEVLRLHGKGLSKKEAKERAIELLELV-GIPDPERRLKSYPHELSGGMRQRVMIAMALALN 171 (316)
T ss_pred EcCchhhcCChhhH-HHHHHHHHHHhhcchhhHHHHHHHHHHHHHc-CCCCHHHHHhhCCcccCCcHHHHHHHHHHHhCC
Confidence 996555 477888 7788888775321 2356788888 88 9975 6799999999 999999999
Q ss_pred ---hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCCcccccCcccccccCCCCC
Q 001709 837 ---LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCPYVMPGAVSASLSWGASGG 907 (1022)
Q Consensus 837 ---LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~~V~~~~~~a~~l~~~~~~ 907 (1022)
||.||||+| ||...|..++..+.+.-++..-+.++|+ |+..-+..++||+.+
T Consensus 172 P~LlIADEPTTA-------------LDvt~QaqIl~Ll~~l~~e~~~aiilIT------HDl~vva~~aDri~V 226 (316)
T COG0444 172 PKLLIADEPTTA-------------LDVTVQAQILDLLKELQREKGTALILIT------HDLGVVAEIADRVAV 226 (316)
T ss_pred CCEEEeCCCcch-------------hhHHHHHHHHHHHHHHHHhcCCEEEEEe------CCHHHHHHhcceEEE
Confidence 999999997 6766777777666554443433444444 666666667777665
No 242
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.92 E-value=2.4e-24 Score=231.40 Aligned_cols=178 Identities=11% Similarity=0.139 Sum_probs=129.0
Q ss_pred cccccCceeEEEEecCCCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCC-----CCceEEEEccccc--
Q 001709 694 FIRPEGLSDVFIFCTSDFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVR-----TINSGNLDAEADD-- 763 (1022)
Q Consensus 694 ~i~~~~l~~~~~~~~~~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~-----PtsG~I~idg~~~-- 763 (1022)
.+++++++. .+ +.+++|+||||+++ +++|+||||||||||||+|+|++ + |++|+|.++|.++
T Consensus 20 ~l~~~nl~~---~~--~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~---~~~~~~~~~G~i~~~g~~~~~ 91 (267)
T PRK14237 20 ALSTKDLHV---YY--GKKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMN---DTIDIARVTGQILYRGIDINR 91 (267)
T ss_pred EEEEeeEEE---EE--CCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcc---CccCCCCcceEEEECCEEccc
Confidence 355555543 33 34689999999998 99999999999999999999998 6 4799999998654
Q ss_pred ----hhhhcCceEEEcCCCCCCccccccccchHHHHhcccc-----c---hHHHHHHHH-HhcCCc----cccCCCcCCc
Q 001709 764 ----QEGIAGGLCYCDSAGVNLQELTMEAARFKDEMWMGIR-----D---LSRKTDLIV-LVHNLS----HKIPRYNYSS 826 (1022)
Q Consensus 764 ----~~~lr~~IGyV~Q~~~~~~~lTV~~~~~~ENI~~g~~-----~---~~~~v~~~L-~v~gL~----~~~~r~~~~L 826 (1022)
...+++.|+||||+...|+ .|+ +||+.++.. . ..+++.+++ .+ +|. +..++++.+|
T Consensus 92 ~~~~~~~~~~~i~~v~q~~~~~~-~tv-----~eni~~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~i~~~~~~~~~~L 164 (267)
T PRK14237 92 KEINVYEMRKHIGMVFQRPNPFA-KSI-----YENITFALERAGVKDKKVLDEIVETSLKQA-ALWDQVKDDLHKSALTL 164 (267)
T ss_pred ccCChHHHhcceEEEecCCcccc-ccH-----HHHHHhHHHhcCCCCHHHHHHHHHHHHHHc-CCCchhhhhhcCCcccC
Confidence 1245778999999433365 799 999987532 1 234566677 66 774 4678999999
Q ss_pred h-HHHHHHHHH---------hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCC-cccccC
Q 001709 827 A-SGQQQPALS---------LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCP-YVMPGA 895 (1022)
Q Consensus 827 S-GqrQRvaIA---------LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~-~V~~~~ 895 (1022)
| |||||++|| |||||||++ +|...+..+...+.+. .. ..++++++|.. .+...+
T Consensus 165 S~G~~qrl~laral~~~p~lllLDEPt~~-------------LD~~~~~~l~~~l~~~-~~-~~tiii~tH~~~~~~~~~ 229 (267)
T PRK14237 165 SGGQQQRLCIARAIAVKPDILLMDEPASA-------------LDPISTMQLEETMFEL-KK-NYTIIIVTHNMQQAARAS 229 (267)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCccc-------------CCHHHHHHHHHHHHHH-hc-CCEEEEEecCHHHHHHhc
Confidence 9 999999999 999999997 6766666666655443 33 34555555333 223334
Q ss_pred cccccc
Q 001709 896 VSASLS 901 (1022)
Q Consensus 896 ~~a~~l 901 (1022)
+..+.+
T Consensus 230 d~i~~l 235 (267)
T PRK14237 230 DYTAFF 235 (267)
T ss_pred CEEEEE
Confidence 444443
No 243
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.91 E-value=2.4e-24 Score=225.58 Aligned_cols=167 Identities=19% Similarity=0.192 Sum_probs=121.1
Q ss_pred CeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc----hhhhcCceEEEcCCCCCCcc
Q 001709 711 FTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD----QEGIAGGLCYCDSAGVNLQE 783 (1022)
Q Consensus 711 ~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~----~~~lr~~IGyV~Q~~~~~~~ 783 (1022)
...+|+|+||+|+ +++|+||||||||||+++|+|++ +|++|+|.+++.++ ...+++.++|++|+ ..++.
T Consensus 13 ~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~---~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~-~~~~~ 88 (236)
T cd03253 13 GRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFY---DVSSGSILIDGQDIREVTLDSLRRAIGVVPQD-TVLFN 88 (236)
T ss_pred CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccc---CCCCCEEEECCEEhhhCCHHHHHhhEEEECCC-Chhhc
Confidence 3569999999998 99999999999999999999999 99999999998654 33456789999994 44335
Q ss_pred ccccccchHHHHhccccc-hHHHHHHHH-Hh----------cCCccccCCCcCCch-HHHHHHHHH---------hhhcc
Q 001709 784 LTMEAARFKDEMWMGIRD-LSRKTDLIV-LV----------HNLSHKIPRYNYSSA-SGQQQPALS---------LLLNE 841 (1022)
Q Consensus 784 lTV~~~~~~ENI~~g~~~-~~~~v~~~L-~v----------~gL~~~~~r~~~~LS-GqrQRvaIA---------LLLDE 841 (1022)
.|+ .||+.++... ....+.+.+ .+ .++.+..++++.+|| |||||++|| |||||
T Consensus 89 ~tv-----~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~llllDE 163 (236)
T cd03253 89 DTI-----GYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDE 163 (236)
T ss_pred chH-----HHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 799 9999886432 111222222 11 144555677889999 999999999 99999
Q ss_pred ccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCCcccccCcccccc
Q 001709 842 AKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCPYVMPGAVSASLS 901 (1022)
Q Consensus 842 PTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~~V~~~~~~a~~l 901 (1022)
||++ +|...+..+...+.+. .. ..++++++|.......++..+.+
T Consensus 164 P~~~-------------LD~~~~~~l~~~l~~~-~~-~~tiii~sh~~~~~~~~d~~~~l 208 (236)
T cd03253 164 ATSA-------------LDTHTEREIQAALRDV-SK-GRTTIVIAHRLSTIVNADKIIVL 208 (236)
T ss_pred Cccc-------------CCHHHHHHHHHHHHHh-cC-CCEEEEEcCCHHHHHhCCEEEEE
Confidence 9996 7777777777666443 33 44555555333333334444433
No 244
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.91 E-value=1.8e-24 Score=257.81 Aligned_cols=184 Identities=11% Similarity=0.090 Sum_probs=133.5
Q ss_pred cccccCceeEEEEecC--CCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEcccc------
Q 001709 694 FIRPEGLSDVFIFCTS--DFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEAD------ 762 (1022)
Q Consensus 694 ~i~~~~l~~~~~~~~~--~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~------ 762 (1022)
.+++++++. .|.. +..++|+||||+|+ +++|+||||||||||+|+|+|++ +|++|+|.+++..
T Consensus 12 ~l~v~~l~~---~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll---~p~~G~i~~~g~~~~~~~~ 85 (623)
T PRK10261 12 VLAVENLNI---AFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLL---EQAGGLVQCDKMLLRRRSR 85 (623)
T ss_pred eEEEeceEE---EecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCC---CCCCeEEEECCEEeccccc
Confidence 466666664 3322 23579999999999 99999999999999999999999 9999999987631
Q ss_pred ----c----h---hhhc-CceEEEcCCC--CCCccccccccchHHHHhcccc--------chHHHHHHHH-HhcCCc---
Q 001709 763 ----D----Q---EGIA-GGLCYCDSAG--VNLQELTMEAARFKDEMWMGIR--------DLSRKTDLIV-LVHNLS--- 816 (1022)
Q Consensus 763 ----~----~---~~lr-~~IGyV~Q~~--~~~~~lTV~~~~~~ENI~~g~~--------~~~~~v~~~L-~v~gL~--- 816 (1022)
. . ..++ +.||||||++ .+++.+|| .|||.++.. ...+++.+++ .+ ||.
T Consensus 86 ~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv-----~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~-gL~~~~ 159 (623)
T PRK10261 86 QVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTV-----GEQIAESIRLHQGASREEAMVEAKRMLDQV-RIPEAQ 159 (623)
T ss_pred cccccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCH-----HHHHHHHHHHhcCCCHHHHHHHHHHHHHHC-CCCChh
Confidence 1 0 1223 4799999954 23677999 999987532 1345678888 88 995
Q ss_pred cccCCCcCCch-HHHHHHHHH---------hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEe
Q 001709 817 HKIPRYNYSSA-SGQQQPALS---------LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVIN 886 (1022)
Q Consensus 817 ~~~~r~~~~LS-GqrQRvaIA---------LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~ 886 (1022)
+..++++.+|| ||||||+|| |||||||++ +|...+..+...+.+..++...++++++
T Consensus 160 ~~~~~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~-------------LD~~~~~~l~~ll~~l~~~~g~tvi~it 226 (623)
T PRK10261 160 TILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTA-------------LDVTIQAQILQLIKVLQKEMSMGVIFIT 226 (623)
T ss_pred hHHhCCCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCc-------------cCHHHHHHHHHHHHHHHHhcCCEEEEEc
Confidence 46899999999 999999999 999999997 6666777766655444333344555554
Q ss_pred cC-CcccccCccccccc
Q 001709 887 SC-PYVMPGAVSASLSW 902 (1022)
Q Consensus 887 ~~-~~V~~~~~~a~~l~ 902 (1022)
|. ..+...++..+++.
T Consensus 227 Hdl~~~~~~adri~vl~ 243 (623)
T PRK10261 227 HDMGVVAEIADRVLVMY 243 (623)
T ss_pred CCHHHHHHhCCEEEEee
Confidence 33 23334445555443
No 245
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.91 E-value=1.7e-24 Score=235.03 Aligned_cols=161 Identities=17% Similarity=0.132 Sum_probs=125.7
Q ss_pred ceeEEEEecCCCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc----hhhhcCceE
Q 001709 700 LSDVFIFCTSDFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD----QEGIAGGLC 772 (1022)
Q Consensus 700 l~~~~~~~~~~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~----~~~lr~~IG 772 (1022)
++++.+.+..+...+|+||||+|+ +++|+|+||||||||+++|+|++ + ++|+|+++|.++ ...++++|+
T Consensus 5 ~~nls~~~~~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~---~-~~G~I~i~g~~i~~~~~~~lr~~i~ 80 (275)
T cd03289 5 VKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLL---N-TEGDIQIDGVSWNSVPLQKWRKAFG 80 (275)
T ss_pred EEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhc---C-CCcEEEECCEEhhhCCHHHHhhhEE
Confidence 444445554345679999999998 99999999999999999999999 6 789999998664 456788999
Q ss_pred EEcCCCCCCccccccccchHHHHhccccchHHHHHHHH-HhcCCccccCCCcCC-----------ch-HHHHHHHHH---
Q 001709 773 YCDSAGVNLQELTMEAARFKDEMWMGIRDLSRKTDLIV-LVHNLSHKIPRYNYS-----------SA-SGQQQPALS--- 836 (1022)
Q Consensus 773 yV~Q~~~~~~~lTV~~~~~~ENI~~g~~~~~~~v~~~L-~v~gL~~~~~r~~~~-----------LS-GqrQRvaIA--- 836 (1022)
||||++..|+ .|+ ++|+.+......+++.+++ .+ ||.++.++++.. || |||||++||
T Consensus 81 ~v~q~~~lf~-~tv-----~~nl~~~~~~~~~~~~~~l~~~-gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRal 153 (275)
T cd03289 81 VIPQKVFIFS-GTF-----RKNLDPYGKWSDEEIWKVAEEV-GLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSV 153 (275)
T ss_pred EECCCcccch-hhH-----HHHhhhccCCCHHHHHHHHHHc-CCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHH
Confidence 9999544465 699 9999633222345667777 77 998888888876 99 999999999
Q ss_pred ------hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEe
Q 001709 837 ------LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVIN 886 (1022)
Q Consensus 837 ------LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~ 886 (1022)
|||||||++ +|..++..+...+.+.. ...++++++
T Consensus 154 l~~p~illlDEpts~-------------LD~~~~~~l~~~l~~~~--~~~tii~is 194 (275)
T cd03289 154 LSKAKILLLDEPSAH-------------LDPITYQVIRKTLKQAF--ADCTVILSE 194 (275)
T ss_pred hcCCCEEEEECcccc-------------CCHHHHHHHHHHHHHhc--CCCEEEEEE
Confidence 999999997 77777777776665432 234666665
No 246
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=2.5e-24 Score=229.61 Aligned_cols=163 Identities=14% Similarity=0.199 Sum_probs=123.4
Q ss_pred cccccCceeEEEEecCCCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCC--C---CceEEEEccccc--
Q 001709 694 FIRPEGLSDVFIFCTSDFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVR--T---INSGNLDAEADD-- 763 (1022)
Q Consensus 694 ~i~~~~l~~~~~~~~~~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~--P---tsG~I~idg~~~-- 763 (1022)
.+++++++. .+ +.+++|+++||+|+ +++|+||||||||||+++|+|++ + | ++|+|+++|.++
T Consensus 12 ~l~i~~l~~---~~--~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~---~~~p~~~~~G~i~~~g~~~~~ 83 (259)
T PRK14274 12 VYQINGMNL---WY--GQHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMI---QMVPNVKLTGEMNYNGSNILK 83 (259)
T ss_pred eEEEeeEEE---EE--CCeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhc---cCCCCCCCceEEEECCEEccc
Confidence 456555553 33 34679999999998 99999999999999999999998 6 3 689999998654
Q ss_pred ----hhhhcCceEEEcCCCCCCccccccccchHHHHhcccc-----c---hHHHHHHHH-HhcCCc----cccCCCcCCc
Q 001709 764 ----QEGIAGGLCYCDSAGVNLQELTMEAARFKDEMWMGIR-----D---LSRKTDLIV-LVHNLS----HKIPRYNYSS 826 (1022)
Q Consensus 764 ----~~~lr~~IGyV~Q~~~~~~~lTV~~~~~~ENI~~g~~-----~---~~~~v~~~L-~v~gL~----~~~~r~~~~L 826 (1022)
...+++.|||+||+...++ .|+ +||+.++.. . ..+++++++ .+ ++. +..++.+.+|
T Consensus 84 ~~~~~~~~~~~i~~v~q~~~~~~-~tv-----~enl~~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~l~~~~~~L 156 (259)
T PRK14274 84 GKVDLVELRKNIGMVFQKGNPFP-QSI-----FDNVAYGPRIHGTKNKKKLQEIVEKSLKDV-ALWDEVKDRLHTQALSL 156 (259)
T ss_pred cccCHHHHhhceEEEecCCcccc-cCH-----HHHHHhHHHhcCCCCHHHHHHHHHHHHHHc-CCchhhhhhhhCCcccC
Confidence 1245678999999543465 599 999987532 1 123466677 66 774 4578999999
Q ss_pred h-HHHHHHHHH---------hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEe
Q 001709 827 A-SGQQQPALS---------LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVIN 886 (1022)
Q Consensus 827 S-GqrQRvaIA---------LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~ 886 (1022)
| |||||++|| |||||||++ +|...+..+...+.+ +.. ..++++++
T Consensus 157 S~Gq~qrv~laral~~~p~llllDEPt~~-------------LD~~~~~~l~~~l~~-~~~-~~tiiivt 211 (259)
T PRK14274 157 SGGQQQRLCIARALATNPDVLLMDEPTSA-------------LDPVSTRKIEELILK-LKE-KYTIVIVT 211 (259)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCccc-------------CCHHHHHHHHHHHHH-Hhc-CCEEEEEE
Confidence 9 999999999 999999997 777777777665544 333 34666665
No 247
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.91 E-value=2.5e-24 Score=228.25 Aligned_cols=155 Identities=10% Similarity=0.106 Sum_probs=119.9
Q ss_pred CeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEcccc-----c----hh----hhcCceEEE
Q 001709 711 FTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEAD-----D----QE----GIAGGLCYC 774 (1022)
Q Consensus 711 ~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~-----~----~~----~lr~~IGyV 774 (1022)
...+|+||||+|+ +++|+||||||||||+++|+|++ +|++|+|.+++.+ + .. ..++.|+|+
T Consensus 15 ~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~---~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~ 91 (253)
T TIGR02323 15 GGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRL---APDHGTATYIMRSGAELELYQLSEAERRRLMRTEWGFV 91 (253)
T ss_pred CceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCC---CCCCcEEEEecccccccccccCCHHHHHHhhhcceEEE
Confidence 3579999999998 99999999999999999999999 9999999999755 3 11 124679999
Q ss_pred cCCCCC--CccccccccchHHHHhcc-----cc---chHHHHHHHH-HhcCCc-cccCCCcCCch-HHHHHHHHH-----
Q 001709 775 DSAGVN--LQELTMEAARFKDEMWMG-----IR---DLSRKTDLIV-LVHNLS-HKIPRYNYSSA-SGQQQPALS----- 836 (1022)
Q Consensus 775 ~Q~~~~--~~~lTV~~~~~~ENI~~g-----~~---~~~~~v~~~L-~v~gL~-~~~~r~~~~LS-GqrQRvaIA----- 836 (1022)
+|+... ++.+|+ .+|+.+. .. ...+.+.+++ .+ |+. +..++.+.+|| |||||++||
T Consensus 92 ~q~~~~~~~~~~~~-----~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l-~l~~~~~~~~~~~LSgG~~qrv~laral~~ 165 (253)
T TIGR02323 92 HQNPRDGLRMRVSA-----GANIGERLMAIGARHYGNIRAAAHDWLEEV-EIDPTRIDDLPRAFSGGMQQRLQIARNLVT 165 (253)
T ss_pred EeCcccccCccccH-----HHHHHHHHHHhcccchHHHHHHHHHHHHHc-CCChhhhhcCchhcCHHHHHHHHHHHHHhc
Confidence 995432 345677 7887532 11 1245677788 77 996 58899999999 999999999
Q ss_pred ----hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEec
Q 001709 837 ----LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINS 887 (1022)
Q Consensus 837 ----LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~ 887 (1022)
|||||||++ +|...+..+...+.+..+....++++++|
T Consensus 166 ~p~vlllDEP~~~-------------LD~~~~~~l~~~l~~~~~~~~~tii~vsH 207 (253)
T TIGR02323 166 RPRLVFMDEPTGG-------------LDVSVQARLLDLLRGLVRDLGLAVIIVTH 207 (253)
T ss_pred CCCEEEEcCCCcc-------------CCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 999999996 77777777776665544443456666653
No 248
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.91 E-value=3.1e-24 Score=221.26 Aligned_cols=170 Identities=15% Similarity=0.132 Sum_probs=121.0
Q ss_pred ceeEEEEecCCCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc----hhhhcCceE
Q 001709 700 LSDVFIFCTSDFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD----QEGIAGGLC 772 (1022)
Q Consensus 700 l~~~~~~~~~~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~----~~~lr~~IG 772 (1022)
++++.+.+.....++|+++||+|+ +++|+|+||||||||+|+|+|++ +|++|+|.+++.++ ....++.|+
T Consensus 9 ~~~l~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~---~~~~G~i~~~g~~~~~~~~~~~~~~i~ 85 (207)
T cd03369 9 VENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFL---EAEEGKIEIDGIDISTIPLEDLRSSLT 85 (207)
T ss_pred EEEEEEEeCCCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhccc---CCCCCeEEECCEEhHHCCHHHHHhhEE
Confidence 334334433223479999999998 99999999999999999999999 99999999998654 334577899
Q ss_pred EEcCCCCCCccccccccchHHHHhccccchHHHHHHHH-HhcCCccccCCCcCCch-HHHHHHHHH---------hhhcc
Q 001709 773 YCDSAGVNLQELTMEAARFKDEMWMGIRDLSRKTDLIV-LVHNLSHKIPRYNYSSA-SGQQQPALS---------LLLNE 841 (1022)
Q Consensus 773 yV~Q~~~~~~~lTV~~~~~~ENI~~g~~~~~~~v~~~L-~v~gL~~~~~r~~~~LS-GqrQRvaIA---------LLLDE 841 (1022)
||+|+...++ .|+ +||+.+......+ ++. .+ + .++++.+|| |||||++|| |||||
T Consensus 86 ~v~q~~~~~~-~tv-----~~~l~~~~~~~~~---~~~~~l-~----~~~~~~~LS~G~~qrv~laral~~~p~llllDE 151 (207)
T cd03369 86 IIPQDPTLFS-GTI-----RSNLDPFDEYSDE---EIYGAL-R----VSEGGLNLSQGQRQLLCLARALLKRPRVLVLDE 151 (207)
T ss_pred EEecCCcccC-ccH-----HHHhcccCCCCHH---HHHHHh-h----ccCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeC
Confidence 9999443354 699 9999764321222 233 33 3 467899999 999999999 99999
Q ss_pred ccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCCcccccCcccccc
Q 001709 842 AKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCPYVMPGAVSASLS 901 (1022)
Q Consensus 842 PTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~~V~~~~~~a~~l 901 (1022)
||++ +|...+..+...+.+. . ...++++++|.......++..+.+
T Consensus 152 P~~~-------------LD~~~~~~l~~~l~~~-~-~~~tiii~th~~~~~~~~d~v~~l 196 (207)
T cd03369 152 ATAS-------------IDYATDALIQKTIREE-F-TNSTILTIAHRLRTIIDYDKILVM 196 (207)
T ss_pred Cccc-------------CCHHHHHHHHHHHHHh-c-CCCEEEEEeCCHHHHhhCCEEEEE
Confidence 9997 7777777766655443 3 234556655333322234444444
No 249
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=2.5e-24 Score=228.36 Aligned_cols=166 Identities=12% Similarity=0.155 Sum_probs=123.6
Q ss_pred CeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCC-----CceEEEEccccc-h-----hhhcCceEEEcC
Q 001709 711 FTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRT-----INSGNLDAEADD-Q-----EGIAGGLCYCDS 776 (1022)
Q Consensus 711 ~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~P-----tsG~I~idg~~~-~-----~~lr~~IGyV~Q 776 (1022)
.+++|+|+||+|+ +++|+|+||||||||+|+|+|++ +| ++|+|.++|.++ . ...++.++|+||
T Consensus 16 ~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~---~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q 92 (251)
T PRK14270 16 EKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMN---DLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQ 92 (251)
T ss_pred CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhcc---CcccCCCCccEEEECCEecccccccHHHHHhheEEEec
Confidence 4679999999998 99999999999999999999998 75 799999998654 1 245678999999
Q ss_pred CCCCCccccccccchHHHHhcccc-----c---hHHHHHHHH-HhcCCc----cccCCCcCCch-HHHHHHHHH------
Q 001709 777 AGVNLQELTMEAARFKDEMWMGIR-----D---LSRKTDLIV-LVHNLS----HKIPRYNYSSA-SGQQQPALS------ 836 (1022)
Q Consensus 777 ~~~~~~~lTV~~~~~~ENI~~g~~-----~---~~~~v~~~L-~v~gL~----~~~~r~~~~LS-GqrQRvaIA------ 836 (1022)
+...++ +|+ +||+.++.. . ..+++.+++ .+ ++. +..++++.+|| |||||++||
T Consensus 93 ~~~~~~-~tv-----~enl~~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~ 165 (251)
T PRK14270 93 KPNPFP-MSI-----YDNVAYGPRIHGIKDKKELDKIVEWALKKA-ALWDEVKDDLKKSALKLSGGQQQRLCIARTIAVK 165 (251)
T ss_pred CCCcCC-CcH-----HHHHHhHHHhcCCCcHHHHHHHHHHHHHHc-CCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcC
Confidence 544465 899 999987532 1 134566777 66 763 46789999999 999999999
Q ss_pred ---hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCCc-ccccCcccccc
Q 001709 837 ---LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCPY-VMPGAVSASLS 901 (1022)
Q Consensus 837 ---LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~~-V~~~~~~a~~l 901 (1022)
|||||||++ +|...+..+...+.+ +.. ..++++++|... +...++..+.+
T Consensus 166 p~llllDEP~~~-------------LD~~~~~~l~~~L~~-~~~-~~tiiivsH~~~~~~~~~d~v~~l 219 (251)
T PRK14270 166 PDVILMDEPTSA-------------LDPISTLKIEDLMVE-LKK-EYTIVIVTHNMQQASRVSDYTAFF 219 (251)
T ss_pred CCEEEEeCCccc-------------CCHHHHHHHHHHHHH-HHh-CCeEEEEEcCHHHHHHhcCEEEEE
Confidence 999999997 777777776665544 433 345666653332 23334444443
No 250
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.91 E-value=3.5e-24 Score=228.09 Aligned_cols=164 Identities=13% Similarity=0.075 Sum_probs=123.3
Q ss_pred ccccCceeEEEEecCCCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCC----CceEEEEccccc-hhh
Q 001709 695 IRPEGLSDVFIFCTSDFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRT----INSGNLDAEADD-QEG 766 (1022)
Q Consensus 695 i~~~~l~~~~~~~~~~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~P----tsG~I~idg~~~-~~~ 766 (1022)
+++++++. .+ ++++|+++||+++ +++|+||||||||||+|+|+|++ +| ++|+|.++|.++ ...
T Consensus 5 l~~~~l~~---~~---~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~---~~~~~~~~G~i~~~g~~i~~~~ 75 (254)
T PRK10418 5 IELRNIAL---QA---AQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGIL---PAGVRQTAGRVLLDGKPVAPCA 75 (254)
T ss_pred EEEeCeEE---Ee---ccceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC---CCCCCCcCCEEEECCeeccccc
Confidence 45455553 33 3579999999998 99999999999999999999999 88 999999998765 322
Q ss_pred h-cCceEEEcCCCCC--CccccccccchHHHHhcc-----ccchHHHHHHHH-HhcCCcc---ccCCCcCCch-HHHHHH
Q 001709 767 I-AGGLCYCDSAGVN--LQELTMEAARFKDEMWMG-----IRDLSRKTDLIV-LVHNLSH---KIPRYNYSSA-SGQQQP 833 (1022)
Q Consensus 767 l-r~~IGyV~Q~~~~--~~~lTV~~~~~~ENI~~g-----~~~~~~~v~~~L-~v~gL~~---~~~r~~~~LS-GqrQRv 833 (1022)
. ++.|+||+|+... .+.+|+ .+|+.+. .....+++.+++ .+ +|.+ ..++.+.+|| |||||+
T Consensus 76 ~~~~~i~~v~q~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~~~~LS~Gq~qrv 149 (254)
T PRK10418 76 LRGRKIATIMQNPRSAFNPLHTM-----HTHARETCLALGKPADDATLTAALEAV-GLENAARVLKLYPFEMSGGMLQRM 149 (254)
T ss_pred cccceEEEEecCCccccCccccH-----HHHHHHHHHHcCCChHHHHHHHHHHHc-CCCChhhhhhcCCcccCHHHHHHH
Confidence 3 4679999995432 345688 7776542 212345677888 77 9876 5789999999 999999
Q ss_pred HHH---------hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEe
Q 001709 834 ALS---------LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVIN 886 (1022)
Q Consensus 834 aIA---------LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~ 886 (1022)
+|| |||||||++ +|...+..+...+.+..+....++++++
T Consensus 150 ~laral~~~p~lLlLDEPt~~-------------LD~~~~~~l~~~L~~~~~~~g~til~~s 198 (254)
T PRK10418 150 MIALALLCEAPFIIADEPTTD-------------LDVVAQARILDLLESIVQKRALGMLLVT 198 (254)
T ss_pred HHHHHHhcCCCEEEEeCCCcc-------------cCHHHHHHHHHHHHHHHHhcCcEEEEEe
Confidence 999 999999996 6777777666655443333334555555
No 251
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.91 E-value=1.6e-24 Score=254.26 Aligned_cols=180 Identities=17% Similarity=0.167 Sum_probs=136.7
Q ss_pred ceeEEEEecCC-CeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc----hhhhcCce
Q 001709 700 LSDVFIFCTSD-FTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD----QEGIAGGL 771 (1022)
Q Consensus 700 l~~~~~~~~~~-~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~----~~~lr~~I 771 (1022)
++++.+.|..+ .+++|+|+||+++ .++|+|+||||||||+|+|+|++ +|++|+|.+|+.++ ...+++.|
T Consensus 340 ~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~---~p~~G~I~i~g~~i~~~~~~~~~~~i 416 (576)
T TIGR02204 340 FEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFY---DPQSGRILLDGVDLRQLDPAELRARM 416 (576)
T ss_pred EEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhcc---CCCCCEEEECCEEHHhcCHHHHHHhc
Confidence 66666655432 2679999999998 99999999999999999999999 99999999998654 56778899
Q ss_pred EEEcCCCCCCccccccccchHHHHhccccc-hHHHHHHHH-Hh----------cCCccccCCCcCCch-HHHHHHHHH--
Q 001709 772 CYCDSAGVNLQELTMEAARFKDEMWMGIRD-LSRKTDLIV-LV----------HNLSHKIPRYNYSSA-SGQQQPALS-- 836 (1022)
Q Consensus 772 GyV~Q~~~~~~~lTV~~~~~~ENI~~g~~~-~~~~v~~~L-~v----------~gL~~~~~r~~~~LS-GqrQRvaIA-- 836 (1022)
+|+|| ++.++..|+ +|||.++..+ .++++.+++ .+ .|++...++....|| |||||++||
T Consensus 417 ~~~~Q-~~~lf~~Ti-----~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRa 490 (576)
T TIGR02204 417 ALVPQ-DPVLFAASV-----MENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARA 490 (576)
T ss_pred eEEcc-CCccccccH-----HHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHH
Confidence 99999 566556899 9999998653 344555555 43 133444556677899 999999999
Q ss_pred -------hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCCcccccCcccccccC
Q 001709 837 -------LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCPYVMPGAVSASLSWG 903 (1022)
Q Consensus 837 -------LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~~V~~~~~~a~~l~~ 903 (1022)
||||||||+ +|..+.+.+...+.+. . ...++++++|-...+..+|..+.+.+
T Consensus 491 l~~~~~ililDEpts~-------------lD~~~~~~i~~~l~~~-~-~~~t~IiitH~~~~~~~~d~vi~l~~ 549 (576)
T TIGR02204 491 ILKDAPILLLDEATSA-------------LDAESEQLVQQALETL-M-KGRTTLIIAHRLATVLKADRIVVMDQ 549 (576)
T ss_pred HHhCCCeEEEeCcccc-------------cCHHHHHHHHHHHHHH-h-CCCEEEEEecchHHHHhCCEEEEEEC
Confidence 999999997 7777766655555433 2 24577777776666666666666544
No 252
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=3.1e-24 Score=227.22 Aligned_cols=152 Identities=15% Similarity=0.175 Sum_probs=118.1
Q ss_pred CeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCC-----CceEEEEccccc-h-----hhhcCceEEEcC
Q 001709 711 FTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRT-----INSGNLDAEADD-Q-----EGIAGGLCYCDS 776 (1022)
Q Consensus 711 ~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~P-----tsG~I~idg~~~-~-----~~lr~~IGyV~Q 776 (1022)
..++|++|||+++ +++|+||||||||||+|+|+|++ +| ++|+|.++|.++ . ..+++.++|+||
T Consensus 15 ~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~---~~~~~~~~~G~i~i~g~~~~~~~~~~~~~~~~i~~~~q 91 (250)
T PRK14262 15 EKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMN---DHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQ 91 (250)
T ss_pred CceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccc---cCCCCCCcceEEEECCEEcccchhhHHHhhhhEEEEec
Confidence 4679999999999 99999999999999999999998 74 899999998654 1 245678999999
Q ss_pred CCCCCccccccccchHHHHhcccc-----c---hHHHHHHHH-HhcCCc----cccCCCcCCch-HHHHHHHHH------
Q 001709 777 AGVNLQELTMEAARFKDEMWMGIR-----D---LSRKTDLIV-LVHNLS----HKIPRYNYSSA-SGQQQPALS------ 836 (1022)
Q Consensus 777 ~~~~~~~lTV~~~~~~ENI~~g~~-----~---~~~~v~~~L-~v~gL~----~~~~r~~~~LS-GqrQRvaIA------ 836 (1022)
+...++ +|+ +||+.++.. . .++.+.+++ .+ ++. +..++++.+|| |||||++||
T Consensus 92 ~~~~~~-~tv-----~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~~~~~LS~Gq~qr~~la~al~~~ 164 (250)
T PRK14262 92 KPTPFP-MSI-----YDNVAFGPRIHGVKSKHKLDRIVEESLKKA-ALWDEVKSELNKPGTRLSGGQQQRLCIARALAVE 164 (250)
T ss_pred CCccCc-ccH-----HHHHHHHHHHcCCCcHHHHHHHHHHHHHHc-CCCchhHHHHhCChhhcCHHHHHHHHHHHHHhCC
Confidence 544465 899 999987532 1 223456667 66 774 35789999999 999999999
Q ss_pred ---hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEec
Q 001709 837 ---LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINS 887 (1022)
Q Consensus 837 ---LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~ 887 (1022)
|||||||++ +|...+..+...+.+. .. ..++++++|
T Consensus 165 p~llllDEP~~~-------------LD~~~~~~l~~~l~~~-~~-~~tili~sH 203 (250)
T PRK14262 165 PEVILLDEPTSA-------------LDPIATQRIEKLLEEL-SE-NYTIVIVTH 203 (250)
T ss_pred CCEEEEeCCccc-------------cCHHHHHHHHHHHHHH-hc-CcEEEEEeC
Confidence 999999996 7777777766655543 33 345556653
No 253
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.91 E-value=6.1e-25 Score=222.17 Aligned_cols=169 Identities=15% Similarity=0.148 Sum_probs=134.8
Q ss_pred CCCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc----hhhhcCceEEEcCCCCCC
Q 001709 709 SDFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD----QEGIAGGLCYCDSAGVNL 781 (1022)
Q Consensus 709 ~~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~----~~~lr~~IGyV~Q~~~~~ 781 (1022)
.++.++|+++||+|. +++|.||||||||||+|+++-|. .|++|++++.|.++ ++..|++|+|+-|.+.+|
T Consensus 13 a~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Li---sp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLf 89 (223)
T COG4619 13 AGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLI---SPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALF 89 (223)
T ss_pred cCCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhcc---CCCCceEEEcCccccccChHHHHHHHHHHHcCcccc
Confidence 356789999999998 99999999999999999999999 99999999999775 778899999999954446
Q ss_pred ccccccccchHHHHhcccc-----chHHHHHHHH-HhcCCcc-ccCCCcCCch-HHHHHHHHH---------hhhccccC
Q 001709 782 QELTMEAARFKDEMWMGIR-----DLSRKTDLIV-LVHNLSH-KIPRYNYSSA-SGQQQPALS---------LLLNEAKS 844 (1022)
Q Consensus 782 ~~lTV~~~~~~ENI~~g~~-----~~~~~v~~~L-~v~gL~~-~~~r~~~~LS-GqrQRvaIA---------LLLDEPTS 844 (1022)
+ .|| +||+.|+-. .+..++...| .+ ++.+ ++++.+..|| |++||+||+ ||||||||
T Consensus 90 g-~tV-----eDNlifP~~~r~rr~dr~aa~~llar~-~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~Ts 162 (223)
T COG4619 90 G-DTV-----EDNLIFPWQIRNRRPDRAAALDLLARF-ALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITS 162 (223)
T ss_pred c-cch-----hhccccchHHhccCCChHHHHHHHHHc-CCchhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchh
Confidence 5 799 999999754 2455666677 88 8875 6899999999 999999999 99999999
Q ss_pred CChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCCcccccCcccccccCCCC
Q 001709 845 LGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCPYVMPGAVSASLSWGASG 906 (1022)
Q Consensus 845 ad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~~V~~~~~~a~~l~~~~~ 906 (1022)
+ +|.+..+.+-.++++-..+..-.++.|+ |+-++++--++++.
T Consensus 163 A-------------LD~~nkr~ie~mi~~~v~~q~vAv~WiT------Hd~dqa~rha~k~i 205 (223)
T COG4619 163 A-------------LDESNKRNIEEMIHRYVREQNVAVLWIT------HDKDQAIRHADKVI 205 (223)
T ss_pred h-------------cChhhHHHHHHHHHHHhhhhceEEEEEe------cChHHHhhhhheEE
Confidence 7 6666666555555444444333344444 77777776666543
No 254
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.91 E-value=3.6e-24 Score=230.38 Aligned_cols=170 Identities=16% Similarity=0.127 Sum_probs=128.9
Q ss_pred CeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc----h---hhhcCceEEEcCCCC-
Q 001709 711 FTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD----Q---EGIAGGLCYCDSAGV- 779 (1022)
Q Consensus 711 ~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~----~---~~lr~~IGyV~Q~~~- 779 (1022)
.+++|+||||+|+ +++|+||||||||||+++|+|++ +|++|+|.+++.++ . ..+++.|+|++|+..
T Consensus 24 ~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~---~p~sG~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~ 100 (268)
T PRK10419 24 HQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLE---SPSQGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSIS 100 (268)
T ss_pred ceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC---CCCCcEEEECCEeccccChhHHHHHHhcEEEEEcChhh
Confidence 3679999999998 99999999999999999999999 99999999998654 1 235678999999542
Q ss_pred -CCccccccccchHHHHhcccc------c--hHHHHHHHH-HhcCCc-cccCCCcCCch-HHHHHHHHH---------hh
Q 001709 780 -NLQELTMEAARFKDEMWMGIR------D--LSRKTDLIV-LVHNLS-HKIPRYNYSSA-SGQQQPALS---------LL 838 (1022)
Q Consensus 780 -~~~~lTV~~~~~~ENI~~g~~------~--~~~~v~~~L-~v~gL~-~~~~r~~~~LS-GqrQRvaIA---------LL 838 (1022)
+++..|+ .+|+.+... . ...++++++ .+ |+. +..++++.+|| |||||++|| ||
T Consensus 101 ~~~~~~t~-----~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~-gl~~~~~~~~~~~LS~Ge~qrl~laral~~~p~lll 174 (268)
T PRK10419 101 AVNPRKTV-----REIIREPLRHLLSLDKAERLARASEMLRAV-DLDDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLI 174 (268)
T ss_pred ccCCCCCH-----HHHHHHHHHhhccCCHHHHHHHHHHHHHHc-CCChhHhhCCCccCChHHHHHHHHHHHHhcCCCEEE
Confidence 2456889 999865321 1 234677888 77 996 58899999999 999999999 99
Q ss_pred hccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCCcc-cccCccccccc
Q 001709 839 LNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCPYV-MPGAVSASLSW 902 (1022)
Q Consensus 839 LDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~~V-~~~~~~a~~l~ 902 (1022)
|||||++ +|...+..+...+.+..+....++++++|.... ...++..+.+.
T Consensus 175 LDEPt~~-------------LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~ 226 (268)
T PRK10419 175 LDEAVSN-------------LDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMD 226 (268)
T ss_pred EeCCCcc-------------cCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEE
Confidence 9999996 777777776666654433334466666544333 33455555554
No 255
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.91 E-value=1.7e-24 Score=256.16 Aligned_cols=179 Identities=15% Similarity=0.147 Sum_probs=135.2
Q ss_pred ceeEEEEecCCCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc----hhhhcCceE
Q 001709 700 LSDVFIFCTSDFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD----QEGIAGGLC 772 (1022)
Q Consensus 700 l~~~~~~~~~~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~----~~~lr~~IG 772 (1022)
++++.+.|. +..++|+|+||+++ +++|+||||||||||+++|+|++ +|++|+|.+||.+. ...+++.++
T Consensus 337 ~~~v~~~y~-~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~---~~~~G~i~~~g~~~~~~~~~~~~~~i~ 412 (585)
T TIGR01192 337 FRHITFEFA-NSSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVY---DPTVGQILIDGIDINTVTRESLRKSIA 412 (585)
T ss_pred EEEEEEECC-CCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCC---CCCCCEEEECCEEhhhCCHHHHHhheE
Confidence 555555543 33569999999998 99999999999999999999999 99999999998654 456789999
Q ss_pred EEcCCCCCCccccccccchHHHHhccccc-hHHHHHHH---------H--HhcCCccccCCCcCCch-HHHHHHHHH---
Q 001709 773 YCDSAGVNLQELTMEAARFKDEMWMGIRD-LSRKTDLI---------V--LVHNLSHKIPRYNYSSA-SGQQQPALS--- 836 (1022)
Q Consensus 773 yV~Q~~~~~~~lTV~~~~~~ENI~~g~~~-~~~~v~~~---------L--~v~gL~~~~~r~~~~LS-GqrQRvaIA--- 836 (1022)
||+| +..++..|+ +|||.++..+ .++.+.++ + +..|+++..++.+..|| |||||++||
T Consensus 413 ~v~q-~~~lf~~ti-----~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARal 486 (585)
T TIGR01192 413 TVFQ-DAGLFNRSI-----RENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAI 486 (585)
T ss_pred EEcc-CCccCcccH-----HHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHH
Confidence 9999 455445899 9999998542 12222222 2 33466667778889999 999999999
Q ss_pred ------hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCCcccccCcccccccC
Q 001709 837 ------LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCPYVMPGAVSASLSWG 903 (1022)
Q Consensus 837 ------LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~~V~~~~~~a~~l~~ 903 (1022)
||||||||+ +|..++..+...+.+. . ...+++++.|-...+..+|..+.+.+
T Consensus 487 l~~p~ililDEpts~-------------LD~~~~~~i~~~l~~~-~-~~~tvI~isH~~~~~~~~d~i~~l~~ 544 (585)
T TIGR01192 487 LKNAPILVLDEATSA-------------LDVETEARVKNAIDAL-R-KNRTTFIIAHRLSTVRNADLVLFLDQ 544 (585)
T ss_pred hcCCCEEEEECCccC-------------CCHHHHHHHHHHHHHH-h-CCCEEEEEEcChHHHHcCCEEEEEEC
Confidence 999999997 7887777776666433 2 24577777665555566666665543
No 256
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=2.5e-24 Score=229.77 Aligned_cols=175 Identities=10% Similarity=0.139 Sum_probs=128.6
Q ss_pred ceeEEEEecCCCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCC-----CceEEEEccccc------hh
Q 001709 700 LSDVFIFCTSDFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRT-----INSGNLDAEADD------QE 765 (1022)
Q Consensus 700 l~~~~~~~~~~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~P-----tsG~I~idg~~~------~~ 765 (1022)
++++.+.+ +..++|+||||+++ +++|+|+||||||||+|+|+|++ +| ++|+|.++|.++ ..
T Consensus 10 ~~~l~~~~--~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~---~~~~~~~~~G~i~~~g~~i~~~~~~~~ 84 (259)
T PRK14260 10 VKDLSFYY--NTSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRIS---ELEGPVKVEGVVDFFGQNIYDPRININ 84 (259)
T ss_pred EEEEEEEE--CCeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhc---CcccCCccceEEEECCEeccccccchH
Confidence 34444443 34679999999998 99999999999999999999998 75 589999998654 13
Q ss_pred hhcCceEEEcCCCCCCccccccccchHHHHhcccc-----c---hHHHHHHHH-HhcCC----ccccCCCcCCch-HHHH
Q 001709 766 GIAGGLCYCDSAGVNLQELTMEAARFKDEMWMGIR-----D---LSRKTDLIV-LVHNL----SHKIPRYNYSSA-SGQQ 831 (1022)
Q Consensus 766 ~lr~~IGyV~Q~~~~~~~lTV~~~~~~ENI~~g~~-----~---~~~~v~~~L-~v~gL----~~~~~r~~~~LS-GqrQ 831 (1022)
.++++|+||+|+...|+ +|+ +||+.++.. . ..+.+.+++ .+ ++ .+..++++.+|| ||||
T Consensus 85 ~~~~~i~~v~q~~~l~~-~tv-----~enl~~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~l~~~~~~~~~~LS~G~~q 157 (259)
T PRK14260 85 RLRRQIGMVFQRPNPFP-MSI-----YENVAYGVRISAKLPQADLDEIVESALKGA-ALWQEVKDKLNKSALGLSGGQQQ 157 (259)
T ss_pred hhhhheEEEecccccCC-ccH-----HHHHHHHHHHhcCCCHHHHHHHHHHHHHHc-CCcchhhhHhcCCcccCCHHHHH
Confidence 45678999999544466 899 999987532 1 234566667 66 76 356789999999 9999
Q ss_pred HHHHH---------hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEe-cCCcccccCcccccc
Q 001709 832 QPALS---------LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVIN-SCPYVMPGAVSASLS 901 (1022)
Q Consensus 832 RvaIA---------LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~-~~~~V~~~~~~a~~l 901 (1022)
|++|| |||||||++ +|...+..+...+.+. .. ..++++++ +.+.+...++..+++
T Consensus 158 rv~laral~~~p~lllLDEPt~~-------------LD~~~~~~l~~~l~~~-~~-~~tiii~tH~~~~i~~~~d~i~~l 222 (259)
T PRK14260 158 RLCIARALAIKPKVLLMDEPCSA-------------LDPIATMKVEELIHSL-RS-ELTIAIVTHNMQQATRVSDFTAFF 222 (259)
T ss_pred HHHHHHHHhcCCCEEEEcCCCcc-------------CCHHHHHHHHHHHHHH-hc-CCEEEEEeCCHHHHHHhcCeEEEE
Confidence 99999 999999997 7777777777666554 33 34556554 333344444554444
No 257
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.91 E-value=3.1e-24 Score=248.65 Aligned_cols=169 Identities=16% Similarity=0.181 Sum_probs=124.3
Q ss_pred CCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCC--CceEEEEccccc-h----hhhcCceEEEcCCCC
Q 001709 710 DFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRT--INSGNLDAEADD-Q----EGIAGGLCYCDSAGV 779 (1022)
Q Consensus 710 ~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~P--tsG~I~idg~~~-~----~~lr~~IGyV~Q~~~ 779 (1022)
+++++|+||||+++ +++|+||||||||||+|+|+|++ +| ++|+|.++|.++ . ...+++||||||+..
T Consensus 12 ~~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~---~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~ 88 (500)
T TIGR02633 12 GGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVY---PHGTWDGEIYWSGSPLKASNIRDTERAGIVIIHQELT 88 (500)
T ss_pred CCeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCC---CCCCCCeEEEECCEECCCCCHHHHHhCCEEEEeeccc
Confidence 35679999999999 99999999999999999999999 76 799999998654 1 123567999999544
Q ss_pred CCccccccccchHHHHhcccc-----------chHHHHHHHH-HhcCCcccc-CCCcCCch-HHHHHHHHH---------
Q 001709 780 NLQELTMEAARFKDEMWMGIR-----------DLSRKTDLIV-LVHNLSHKI-PRYNYSSA-SGQQQPALS--------- 836 (1022)
Q Consensus 780 ~~~~lTV~~~~~~ENI~~g~~-----------~~~~~v~~~L-~v~gL~~~~-~r~~~~LS-GqrQRvaIA--------- 836 (1022)
.++.+|+ .||+.++.. ...+++++++ .+ +|.+.. ++++.+|| ||||||+||
T Consensus 89 ~~~~~tv-----~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~~LSgG~~qrv~iA~al~~~p~l 162 (500)
T TIGR02633 89 LVPELSV-----AENIFLGNEITLPGGRMAYNAMYLRAKNLLREL-QLDADNVTRPVGDYGGGQQQLVEIAKALNKQARL 162 (500)
T ss_pred cCCCCcH-----HHHHHhhccccccccccCHHHHHHHHHHHHHHc-CCCCCcccCchhhCCHHHHHHHHHHHHHhhCCCE
Confidence 4788999 999987531 1234577788 77 998664 67899999 999999999
Q ss_pred hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecC-CcccccCcccccc
Q 001709 837 LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSC-PYVMPGAVSASLS 901 (1022)
Q Consensus 837 LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~-~~V~~~~~~a~~l 901 (1022)
|||||||++ +|...+..+...+.+ +.....++++++|. +.+...++..+++
T Consensus 163 llLDEPt~~-------------LD~~~~~~l~~~l~~-l~~~g~tviiitHd~~~~~~~~d~i~~l 214 (500)
T TIGR02633 163 LILDEPSSS-------------LTEKETEILLDIIRD-LKAHGVACVYISHKLNEVKAVCDTICVI 214 (500)
T ss_pred EEEeCCCCC-------------CCHHHHHHHHHHHHH-HHhCCCEEEEEeCcHHHHHHhCCEEEEE
Confidence 999999997 555555555554433 33333345555433 2233334444444
No 258
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.91 E-value=3.3e-24 Score=249.78 Aligned_cols=167 Identities=16% Similarity=0.188 Sum_probs=126.8
Q ss_pred ccccCceeEEEEecC---CCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEc-ccc---c-
Q 001709 695 IRPEGLSDVFIFCTS---DFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDA-EAD---D- 763 (1022)
Q Consensus 695 i~~~~l~~~~~~~~~---~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~id-g~~---~- 763 (1022)
+++++++. .|.. +..++|+||||+|+ +++|+||||||||||+|+|+|++ +|++|+|.++ +.+ +
T Consensus 280 l~~~~l~~---~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~---~p~~G~i~~~~g~~~~~~~ 353 (520)
T TIGR03269 280 IKVRNVSK---RYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVL---EPTSGEVNVRVGDEWVDMT 353 (520)
T ss_pred EEEeccEE---EeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC---CCCCeEEEEecCCcccccc
Confidence 55555553 3321 23579999999999 99999999999999999999999 9999999996 532 1
Q ss_pred h------hhhcCceEEEcCCCCCCccccccccchHHHHhccc----cc--hHHHHHHHH-HhcCCcc-----ccCCCcCC
Q 001709 764 Q------EGIAGGLCYCDSAGVNLQELTMEAARFKDEMWMGI----RD--LSRKTDLIV-LVHNLSH-----KIPRYNYS 825 (1022)
Q Consensus 764 ~------~~lr~~IGyV~Q~~~~~~~lTV~~~~~~ENI~~g~----~~--~~~~v~~~L-~v~gL~~-----~~~r~~~~ 825 (1022)
. ..++++||||||+...++.+|| .||+.++. .. ..+++.+++ .+ ||.+ +.++++.+
T Consensus 354 ~~~~~~~~~~~~~i~~v~q~~~l~~~~tv-----~e~l~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~~~~~~ 427 (520)
T TIGR03269 354 KPGPDGRGRAKRYIGILHQEYDLYPHRTV-----LDNLTEAIGLELPDELARMKAVITLKMV-GFDEEKAEEILDKYPDE 427 (520)
T ss_pred ccchhhHHHHhhhEEEEccCcccCCCCcH-----HHHHHHHHHcCCCHHHHHHHHHHHHHhC-CCCCccchhhhhCChhh
Confidence 0 1245679999995444788999 99997642 11 234677788 77 9964 67999999
Q ss_pred ch-HHHHHHHHH---------hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEe
Q 001709 826 SA-SGQQQPALS---------LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVIN 886 (1022)
Q Consensus 826 LS-GqrQRvaIA---------LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~ 886 (1022)
|| |||||++|| |||||||++ +|...+..+...+.+..+....++++++
T Consensus 428 LSgGq~qrv~laral~~~p~lLllDEPt~~-------------LD~~~~~~l~~~l~~l~~~~g~tvi~vs 485 (520)
T TIGR03269 428 LSEGERHRVALAQVLIKEPRIVILDEPTGT-------------MDPITKVDVTHSILKAREEMEQTFIIVS 485 (520)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCccc-------------CCHHHHHHHHHHHHHHHHHcCcEEEEEe
Confidence 99 999999999 999999997 7777777777666544333344566665
No 259
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.91 E-value=2.9e-24 Score=251.51 Aligned_cols=181 Identities=19% Similarity=0.186 Sum_probs=135.6
Q ss_pred ceeEEEEecCCCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc----hhhhcCceE
Q 001709 700 LSDVFIFCTSDFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD----QEGIAGGLC 772 (1022)
Q Consensus 700 l~~~~~~~~~~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~----~~~lr~~IG 772 (1022)
++++.+.|..+.+++|+|+||+++ +++|+||||||||||+|+|+|++ +|++|+|.+||.++ ...+++.|+
T Consensus 319 ~~~v~~~y~~~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~---~~~~G~i~~~g~~i~~~~~~~~~~~i~ 395 (544)
T TIGR01842 319 VENVTIVPPGGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIW---PPTSGSVRLDGADLKQWDRETFGKHIG 395 (544)
T ss_pred EEEEEEEcCCCCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC---CCCCceEEECCEehhhCCHHHHhhheE
Confidence 556666554444689999999999 99999999999999999999999 99999999998654 456788999
Q ss_pred EEcCCCCCCccccccccchHHHHhccccc-hHHHHH---------HHH--HhcCCccccCCCcCCch-HHHHHHHHH---
Q 001709 773 YCDSAGVNLQELTMEAARFKDEMWMGIRD-LSRKTD---------LIV--LVHNLSHKIPRYNYSSA-SGQQQPALS--- 836 (1022)
Q Consensus 773 yV~Q~~~~~~~lTV~~~~~~ENI~~g~~~-~~~~v~---------~~L--~v~gL~~~~~r~~~~LS-GqrQRvaIA--- 836 (1022)
||+| ++.++..|+ +|||.++..+ .++++. +.+ +.+|+++..++....|| |||||++||
T Consensus 396 ~v~q-~~~lf~~ti-----~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARal 469 (544)
T TIGR01842 396 YLPQ-DVELFPGTV-----AENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARAL 469 (544)
T ss_pred EecC-CcccccccH-----HHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHH
Confidence 9999 455334699 9999876542 222332 223 22356667778889999 999999999
Q ss_pred ------hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCCcccccCcccccccC
Q 001709 837 ------LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCPYVMPGAVSASLSWG 903 (1022)
Q Consensus 837 ------LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~~V~~~~~~a~~l~~ 903 (1022)
|||||||++ +|.+++..+...+.+. .....++++++|-......+|..+.+.+
T Consensus 470 l~~~~ililDEpts~-------------LD~~~~~~i~~~l~~~-~~~~~tvi~ith~~~~~~~~d~i~~l~~ 528 (544)
T TIGR01842 470 YGDPKLVVLDEPNSN-------------LDEEGEQALANAIKAL-KARGITVVVITHRPSLLGCVDKILVLQD 528 (544)
T ss_pred hcCCCEEEEeCCccc-------------cCHHHHHHHHHHHHHH-hhCCCEEEEEeCCHHHHHhCCEEEEEEC
Confidence 999999997 7877777766655443 2233567777665555666666665543
No 260
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=3.7e-24 Score=232.67 Aligned_cols=154 Identities=17% Similarity=0.193 Sum_probs=117.2
Q ss_pred CeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCC--CCceEEEEccccc-h-----hhhcCceEEEcCCCC
Q 001709 711 FTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVR--TINSGNLDAEADD-Q-----EGIAGGLCYCDSAGV 779 (1022)
Q Consensus 711 ~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~--PtsG~I~idg~~~-~-----~~lr~~IGyV~Q~~~ 779 (1022)
...+|+||||+|+ +++|+||||||||||+++|+|+....+ |++|+|.++|.++ . ..++++|+||+|+..
T Consensus 51 ~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~ 130 (286)
T PRK14275 51 EFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVFQKPN 130 (286)
T ss_pred CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccchHHhhhcEEEECCCCC
Confidence 4579999999998 999999999999999999999860001 4999999998654 1 235678999999544
Q ss_pred CCccccccccchHHHHhcccc-----c---hHHHHHHHH-HhcCC----ccccCCCcCCch-HHHHHHHHH---------
Q 001709 780 NLQELTMEAARFKDEMWMGIR-----D---LSRKTDLIV-LVHNL----SHKIPRYNYSSA-SGQQQPALS--------- 836 (1022)
Q Consensus 780 ~~~~lTV~~~~~~ENI~~g~~-----~---~~~~v~~~L-~v~gL----~~~~~r~~~~LS-GqrQRvaIA--------- 836 (1022)
.++ .|+ .|||.++.. . ..+++.+++ .+ ++ .+..++++.+|| |||||++||
T Consensus 131 l~~-~tv-----~enl~~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~p~l 203 (286)
T PRK14275 131 PFP-KSI-----FDNIAYGPRLHGINDKKQLEEIVEKSLRKA-ALWDEVSDRLDKNALGLSGGQQQRLCVARTLAVEPEI 203 (286)
T ss_pred CCc-cCH-----HHHHHhHHHhcCCCcHHHHHHHHHHHHHHh-CCccchhhHhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 465 599 999987642 1 134566677 66 76 456789999999 999999999
Q ss_pred hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEe
Q 001709 837 LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVIN 886 (1022)
Q Consensus 837 LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~ 886 (1022)
|||||||++ +|...+..+...+. .+.. ..++++++
T Consensus 204 llLDEPt~g-------------LD~~~~~~l~~~L~-~~~~-~~tvIivs 238 (286)
T PRK14275 204 LLLDEPTSA-------------LDPKATAKIEDLIQ-ELRG-SYTIMIVT 238 (286)
T ss_pred EEEeCCCcc-------------CCHHHHHHHHHHHH-HHhc-CCeEEEEe
Confidence 999999996 77777777666554 3443 24555554
No 261
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=3.9e-24 Score=226.60 Aligned_cols=161 Identities=12% Similarity=0.184 Sum_probs=121.9
Q ss_pred ceeEEEEecCCCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCC-----CCceEEEEccccc------hh
Q 001709 700 LSDVFIFCTSDFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVR-----TINSGNLDAEADD------QE 765 (1022)
Q Consensus 700 l~~~~~~~~~~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~-----PtsG~I~idg~~~------~~ 765 (1022)
++++.+.+ +.+++|+++||+|+ +++|+|+||||||||+|+|+|++ + |++|+|.++|.++ ..
T Consensus 7 ~~~l~~~~--~~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~---~~~p~~~~~G~v~i~g~~~~~~~~~~~ 81 (251)
T PRK14251 7 AKDVHLSY--GNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMN---DDIENIKITGEIKFEGQNIYGSKMDLV 81 (251)
T ss_pred EEeeEEEE--CCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhcc---ccccCCCcceEEEECCEEcccccchHH
Confidence 34444444 34679999999998 99999999999999999999998 7 4799999998653 13
Q ss_pred hhcCceEEEcCCCCCCccccccccchHHHHhcccc-----c---hHHHHHHHH-HhcCCc----cccCCCcCCch-HHHH
Q 001709 766 GIAGGLCYCDSAGVNLQELTMEAARFKDEMWMGIR-----D---LSRKTDLIV-LVHNLS----HKIPRYNYSSA-SGQQ 831 (1022)
Q Consensus 766 ~lr~~IGyV~Q~~~~~~~lTV~~~~~~ENI~~g~~-----~---~~~~v~~~L-~v~gL~----~~~~r~~~~LS-GqrQ 831 (1022)
.+++.++|++|+...|+ .|+ +||+.++.. . ..+++.+++ .+ ++. +..++.+.+|| ||||
T Consensus 82 ~~~~~i~~~~q~~~~~~-~tv-----~enl~~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~~~~~LS~Gq~q 154 (251)
T PRK14251 82 ELRKEVGMVFQQPTPFP-FSV-----YDNVAYGLKIAGVKDKELIDQRVEESLKQA-AIWKETKDNLDRNAQAFSGGQQQ 154 (251)
T ss_pred HhhccEEEEecCCccCC-CcH-----HHHHHHHHHHcCCCCHHHHHHHHHHHHHHc-CCCcchHHHhccChhhCCHHHHH
Confidence 45678999999543364 799 999987532 1 234566777 66 873 45788999999 9999
Q ss_pred HHHHH---------hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEec
Q 001709 832 QPALS---------LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINS 887 (1022)
Q Consensus 832 RvaIA---------LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~ 887 (1022)
|++|| |||||||++ +|...+..+...+.+. .. ..++++++|
T Consensus 155 r~~laral~~~p~llllDEP~~~-------------LD~~~~~~l~~~l~~~-~~-~~tiiiisH 204 (251)
T PRK14251 155 RICIARALAVRPKVVLLDEPTSA-------------LDPISSSEIEETLMEL-KH-QYTFIMVTH 204 (251)
T ss_pred HHHHHHHHhcCCCEEEecCCCcc-------------CCHHHHHHHHHHHHHH-Hc-CCeEEEEEC
Confidence 99999 999999997 6777777666655443 33 345666653
No 262
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=5e-24 Score=226.02 Aligned_cols=151 Identities=13% Similarity=0.181 Sum_probs=117.3
Q ss_pred CeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCC-----ceEEEEccccc------hhhhcCceEEEcC
Q 001709 711 FTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTI-----NSGNLDAEADD------QEGIAGGLCYCDS 776 (1022)
Q Consensus 711 ~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~Pt-----sG~I~idg~~~------~~~lr~~IGyV~Q 776 (1022)
.+.+|+++||+|. +++|+||||||||||+|+|+|++ +|+ +|+|.+++.++ ...+++.++||||
T Consensus 16 ~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~---~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~~i~~v~q 92 (251)
T PRK14249 16 KHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMN---DIVSGARLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQ 92 (251)
T ss_pred CeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhccc---CccccCCcccEEEECCEEccccccChHHhhceEEEEec
Confidence 4679999999998 99999999999999999999999 887 69999998654 1245778999999
Q ss_pred CCCCCccccccccchHHHHhcccc----c----hHHHHHHHH-HhcCCc----cccCCCcCCch-HHHHHHHHH------
Q 001709 777 AGVNLQELTMEAARFKDEMWMGIR----D----LSRKTDLIV-LVHNLS----HKIPRYNYSSA-SGQQQPALS------ 836 (1022)
Q Consensus 777 ~~~~~~~lTV~~~~~~ENI~~g~~----~----~~~~v~~~L-~v~gL~----~~~~r~~~~LS-GqrQRvaIA------ 836 (1022)
+...++ .|+ +||+.++.. . ..+++++++ .+ ++. +..++++.+|| |||||++||
T Consensus 93 ~~~~~~-~tv-----~enl~~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~ 165 (251)
T PRK14249 93 QPNPFP-KSI-----FDNVAFGPRMLGTTAQSRLDEVVEKSLRQA-ALWDEVKDNLHKSGLALSGGQQQRLCIARVLAIE 165 (251)
T ss_pred CCccCc-CcH-----HHHHhhHHHhcCCChhhHHHHHHHHHHHHh-CCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcC
Confidence 544466 599 999987642 1 124456666 55 653 46789999999 999999999
Q ss_pred ---hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEe
Q 001709 837 ---LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVIN 886 (1022)
Q Consensus 837 ---LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~ 886 (1022)
|||||||++ +|...+..+...+. .+. ...++++++
T Consensus 166 p~lllLDEPt~~-------------LD~~~~~~l~~~l~-~~~-~~~tilivs 203 (251)
T PRK14249 166 PEVILMDEPCSA-------------LDPVSTMRIEELMQ-ELK-QNYTIAIVT 203 (251)
T ss_pred CCEEEEeCCCcc-------------CCHHHHHHHHHHHH-HHh-cCCEEEEEe
Confidence 999999997 67777776666554 343 334666665
No 263
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.91 E-value=4.4e-24 Score=229.00 Aligned_cols=166 Identities=11% Similarity=0.111 Sum_probs=123.2
Q ss_pred CeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCC-----CCceEEEEccccc------hhhhcCceEEEcC
Q 001709 711 FTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVR-----TINSGNLDAEADD------QEGIAGGLCYCDS 776 (1022)
Q Consensus 711 ~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~-----PtsG~I~idg~~~------~~~lr~~IGyV~Q 776 (1022)
..++|+||||+|+ +++|+|+||||||||+|+|+|++ + |++|+|.+++.++ ....++.|+|++|
T Consensus 22 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~---~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q 98 (264)
T PRK14243 22 SFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLN---DLIPGFRVEGKVTFHGKNLYAPDVDPVEVRRRIGMVFQ 98 (264)
T ss_pred CEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhh---cccCCCCCceEEEECCEEccccccChHHHhhhEEEEcc
Confidence 4579999999998 99999999999999999999998 6 4899999998543 2345678999999
Q ss_pred CCCCCccccccccchHHHHhcccc------chHHHHHHHH-HhcCCc----cccCCCcCCch-HHHHHHHHH--------
Q 001709 777 AGVNLQELTMEAARFKDEMWMGIR------DLSRKTDLIV-LVHNLS----HKIPRYNYSSA-SGQQQPALS-------- 836 (1022)
Q Consensus 777 ~~~~~~~lTV~~~~~~ENI~~g~~------~~~~~v~~~L-~v~gL~----~~~~r~~~~LS-GqrQRvaIA-------- 836 (1022)
+...++ .|+ .||+.++.. ...++++.++ .+ ++. +..++.+.+|| |||||++||
T Consensus 99 ~~~~~~-~tv-----~enl~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~ 171 (264)
T PRK14243 99 KPNPFP-KSI-----YDNIAYGARINGYKGDMDELVERSLRQA-ALWDEVKDKLKQSGLSLSGGQQQRLCIARAIAVQPE 171 (264)
T ss_pred CCcccc-ccH-----HHHHHhhhhhcCcchHHHHHHHHHHHHh-CchhhHHHHhcCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 543365 599 999987643 1234455566 55 653 45788999999 999999999
Q ss_pred -hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecC-CcccccCcccccc
Q 001709 837 -LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSC-PYVMPGAVSASLS 901 (1022)
Q Consensus 837 -LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~-~~V~~~~~~a~~l 901 (1022)
|||||||++ +|...+..+...+.+ +.. ..++++++|. +.+...++..+++
T Consensus 172 lllLDEPt~~-------------LD~~~~~~l~~~L~~-~~~-~~tvi~vtH~~~~~~~~~d~v~~l 223 (264)
T PRK14243 172 VILMDEPCSA-------------LDPISTLRIEELMHE-LKE-QYTIIIVTHNMQQAARVSDMTAFF 223 (264)
T ss_pred EEEEeCCCcc-------------CCHHHHHHHHHHHHH-Hhc-CCEEEEEecCHHHHHHhCCEEEEE
Confidence 999999997 777777776665544 333 2466666433 3344444555444
No 264
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.91 E-value=2.4e-24 Score=249.10 Aligned_cols=152 Identities=11% Similarity=0.095 Sum_probs=116.9
Q ss_pred CCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc----hhhhcCceEEEcCCCCC-C
Q 001709 710 DFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD----QEGIAGGLCYCDSAGVN-L 781 (1022)
Q Consensus 710 ~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~----~~~lr~~IGyV~Q~~~~-~ 781 (1022)
+..++|+||||+|+ +++|+||||||||||||+|+|++ +|++|+|.+++.++ ....++.+||++|+... +
T Consensus 14 ~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~---~p~~G~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 90 (490)
T PRK10938 14 SDTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGEL---PLLSGERQSQFSHITRLSFEQLQKLVSDEWQRNNTDM 90 (490)
T ss_pred CCeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccC---CCCCceEEECCcccccCCHHHHHHHhceeccCcchhh
Confidence 34569999999998 99999999999999999999999 99999999987543 23345679999995332 1
Q ss_pred -------ccccccccchHHHHhccccchHHHHHHHH-HhcCCccccCCCcCCch-HHHHHHHHH---------hhhcccc
Q 001709 782 -------QELTMEAARFKDEMWMGIRDLSRKTDLIV-LVHNLSHKIPRYNYSSA-SGQQQPALS---------LLLNEAK 843 (1022)
Q Consensus 782 -------~~lTV~~~~~~ENI~~g~~~~~~~v~~~L-~v~gL~~~~~r~~~~LS-GqrQRvaIA---------LLLDEPT 843 (1022)
..+|+ +||+.++. ...+++++++ .+ ||.+..++++.+|| |||||++|| |||||||
T Consensus 91 ~~~~~~~~~~~~-----~~~~~~~~-~~~~~~~~~l~~~-~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt 163 (490)
T PRK10938 91 LSPGEDDTGRTT-----AEIIQDEV-KDPARCEQLAQQF-GITALLDRRFKYLSTGETRKTLLCQALMSEPDLLILDEPF 163 (490)
T ss_pred cccchhhccccH-----HHhcccch-hHHHHHHHHHHHc-CCHhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCc
Confidence 14688 88886542 2346788888 88 99999999999999 999999999 9999999
Q ss_pred CCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEE
Q 001709 844 SLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVI 885 (1022)
Q Consensus 844 Sad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv 885 (1022)
++ +|...+..+...+.+ +.....+++++
T Consensus 164 ~~-------------LD~~~~~~l~~~l~~-~~~~g~tvii~ 191 (490)
T PRK10938 164 DG-------------LDVASRQQLAELLAS-LHQSGITLVLV 191 (490)
T ss_pred cc-------------CCHHHHHHHHHHHHH-HHhcCCeEEEE
Confidence 97 555555555544433 33333344444
No 265
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.91 E-value=2.5e-24 Score=250.25 Aligned_cols=177 Identities=12% Similarity=0.190 Sum_probs=132.7
Q ss_pred cccccCceeEEEEecCCCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc-h----h
Q 001709 694 FIRPEGLSDVFIFCTSDFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD-Q----E 765 (1022)
Q Consensus 694 ~i~~~~l~~~~~~~~~~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~-~----~ 765 (1022)
.+.+++++. .+ + .+|+||||+|+ +++|+||||||||||+|+|+|++ +|++|+|.+++.++ . .
T Consensus 265 ~l~~~~l~~---~~--~--~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~---~p~~G~I~~~g~~~~~~~~~~ 334 (510)
T PRK09700 265 VFEVRNVTS---RD--R--KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVD---KRAGGEIRLNGKDISPRSPLD 334 (510)
T ss_pred EEEEeCccc---cC--C--CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC---cCCCCeEEECCEECCCCCHHH
Confidence 355566663 21 2 38999999999 99999999999999999999999 99999999998654 1 2
Q ss_pred hhcCceEEEcCCC--C-CCccccccccchHHHHhcccc--------------c--hHHHHHHHH-HhcCCc-cccCCCcC
Q 001709 766 GIAGGLCYCDSAG--V-NLQELTMEAARFKDEMWMGIR--------------D--LSRKTDLIV-LVHNLS-HKIPRYNY 824 (1022)
Q Consensus 766 ~lr~~IGyV~Q~~--~-~~~~lTV~~~~~~ENI~~g~~--------------~--~~~~v~~~L-~v~gL~-~~~~r~~~ 824 (1022)
.++++||||||+. . .++++|+ +||+.++.. . ..+++++++ .+ ||. +..++++.
T Consensus 335 ~~~~~i~~v~q~~~~~~~~~~~tv-----~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~ 408 (510)
T PRK09700 335 AVKKGMAYITESRRDNGFFPNFSI-----AQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELL-ALKCHSVNQNIT 408 (510)
T ss_pred HHHCCcEEccCccccCCCcCCCcH-----HHHhccccccccccccccccccChHHHHHHHHHHHHhc-CCCCCCccCccc
Confidence 3467899999952 2 3778999 999987521 1 223567888 77 996 78999999
Q ss_pred Cch-HHHHHHHHH---------hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCCccccc
Q 001709 825 SSA-SGQQQPALS---------LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCPYVMPG 894 (1022)
Q Consensus 825 ~LS-GqrQRvaIA---------LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~~V~~~ 894 (1022)
+|| ||||||+|| |||||||++ +|...+..+...+.+ +.....++++++ |+
T Consensus 409 ~LSgGq~qrv~lAral~~~p~lLlLDEPt~~-------------LD~~~~~~l~~~l~~-l~~~g~tvi~vs------Hd 468 (510)
T PRK09700 409 ELSGGNQQKVLISKWLCCCPEVIIFDEPTRG-------------IDVGAKAEIYKVMRQ-LADDGKVILMVS------SE 468 (510)
T ss_pred cCChHHHHHHHHHHHHhcCCCEEEECCCCCC-------------cCHHHHHHHHHHHHH-HHHCCCEEEEEc------CC
Confidence 999 999999999 999999997 677777776665544 444444555555 44
Q ss_pred CcccccccCCCC
Q 001709 895 AVSASLSWGASG 906 (1022)
Q Consensus 895 ~~~a~~l~~~~~ 906 (1022)
.+.+..+++++.
T Consensus 469 ~~~~~~~~d~i~ 480 (510)
T PRK09700 469 LPEIITVCDRIA 480 (510)
T ss_pred HHHHHhhCCEEE
Confidence 444444445443
No 266
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=5.6e-24 Score=236.33 Aligned_cols=179 Identities=9% Similarity=0.128 Sum_probs=130.5
Q ss_pred ceeEEEEecCCCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCC-----CCceEEEEccccc------hh
Q 001709 700 LSDVFIFCTSDFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVR-----TINSGNLDAEADD------QE 765 (1022)
Q Consensus 700 l~~~~~~~~~~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~-----PtsG~I~idg~~~------~~ 765 (1022)
++++.+.+..+..++|+||||+|+ +++|+||||||||||+++|+|++ + |++|+|.+||.++ ..
T Consensus 83 ~~nls~~y~~~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~---~~~~~~p~~G~I~idG~~i~~~~~~~~ 159 (329)
T PRK14257 83 IRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLN---DLIEGTSHEGEIYFLGTNTRSKKISSL 159 (329)
T ss_pred EEeeEEEecCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccc---cccCCCCCceEEEECCEEccccccchH
Confidence 445445554344679999999998 99999999999999999999998 5 5799999998765 13
Q ss_pred hhcCceEEEcCCCCCCccccccccchHHHHhcccc-c---hH----HHHHHHH-HhcCC----ccccCCCcCCch-HHHH
Q 001709 766 GIAGGLCYCDSAGVNLQELTMEAARFKDEMWMGIR-D---LS----RKTDLIV-LVHNL----SHKIPRYNYSSA-SGQQ 831 (1022)
Q Consensus 766 ~lr~~IGyV~Q~~~~~~~lTV~~~~~~ENI~~g~~-~---~~----~~v~~~L-~v~gL----~~~~~r~~~~LS-GqrQ 831 (1022)
.+++.++|||| .+.++.+|+ +|||.|+.. . .+ +.+..++ .+ +| .+..++++.+|| ||||
T Consensus 160 ~lr~~i~~v~q-~~~~~~~ti-----~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~-~L~~~l~~~~~~~~~~LSgGqkq 232 (329)
T PRK14257 160 ELRTRIGMVFQ-KPTPFEMSI-----FDNVAYGPRNNGINDRKILEKIVEKSLKSA-ALWDEVKDDLDKAGNALSGGQQQ 232 (329)
T ss_pred hhhccEEEEec-CCccCCCcH-----HHHHHhHHHhcCCChHHHHHHHHHHHHHHc-CCcchhhhhhhCCcccCCHHHHH
Confidence 56789999999 455335899 999998643 1 11 2245556 55 55 456789999999 9999
Q ss_pred HHHHH---------hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCCcc-cccCcccccc
Q 001709 832 QPALS---------LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCPYV-MPGAVSASLS 901 (1022)
Q Consensus 832 RvaIA---------LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~~V-~~~~~~a~~l 901 (1022)
|++|| |||||||++ +|.+....+...+ +.+.. ..++++++|.... ...++..+++
T Consensus 233 Rl~LARAl~~~p~IlLLDEPts~-------------LD~~~~~~i~~~i-~~l~~-~~Tii~iTH~l~~i~~~~Driivl 297 (329)
T PRK14257 233 RLCIARAIALEPEVLLMDEPTSA-------------LDPIATAKIEELI-LELKK-KYSIIIVTHSMAQAQRISDETVFF 297 (329)
T ss_pred HHHHHHHHHhCCCEEEEeCCccc-------------CCHHHHHHHHHHH-HHHhc-CCEEEEEeCCHHHHHHhCCEEEEE
Confidence 99999 999999997 7777777755555 34433 3566666544333 3335555554
Q ss_pred cC
Q 001709 902 WG 903 (1022)
Q Consensus 902 ~~ 903 (1022)
.+
T Consensus 298 ~~ 299 (329)
T PRK14257 298 YQ 299 (329)
T ss_pred EC
Confidence 33
No 267
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.91 E-value=4.6e-24 Score=225.84 Aligned_cols=153 Identities=13% Similarity=0.201 Sum_probs=116.4
Q ss_pred CeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCC---CceEEEEccccc------hhhhcCceEEEcCCC
Q 001709 711 FTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRT---INSGNLDAEADD------QEGIAGGLCYCDSAG 778 (1022)
Q Consensus 711 ~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~P---tsG~I~idg~~~------~~~lr~~IGyV~Q~~ 778 (1022)
.+++|+++||+|+ +++|+||||||||||+++|+|++ ...| ++|+|.++|.++ ...+++.|+||||+.
T Consensus 17 ~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~ 95 (252)
T PRK14239 17 KKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMN-DLNPEVTITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQP 95 (252)
T ss_pred CeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccc-ccCCCCCccceEEECCEECcCcccchHhhhhcEEEEecCC
Confidence 4579999999998 99999999999999999999995 0036 599999998654 124567899999954
Q ss_pred CCCccccccccchHHHHhcccc-----c---hHHHHHHHH-HhcCC----ccccCCCcCCch-HHHHHHHHH--------
Q 001709 779 VNLQELTMEAARFKDEMWMGIR-----D---LSRKTDLIV-LVHNL----SHKIPRYNYSSA-SGQQQPALS-------- 836 (1022)
Q Consensus 779 ~~~~~lTV~~~~~~ENI~~g~~-----~---~~~~v~~~L-~v~gL----~~~~~r~~~~LS-GqrQRvaIA-------- 836 (1022)
..|+ +|+ +||+.++.. . ..+++.+++ .+ ++ .+..++.+.+|| |||||++||
T Consensus 96 ~~~~-~tv-----~enl~~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~ 168 (252)
T PRK14239 96 NPFP-MSI-----YENVVYGLRLKGIKDKQVLDEAVEKSLKGA-SIWDEVKDRLHDSALGLSGGQQQRVCIARVLATSPK 168 (252)
T ss_pred ccCc-CcH-----HHHHHHHHHHcCCCcHHHHHHHHHHHHHHc-CCchhHHHHHhcCcccCCHHHHHHHHHHHHHhcCCC
Confidence 3365 899 999987532 1 234456666 66 65 346789999999 999999999
Q ss_pred -hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEe
Q 001709 837 -LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVIN 886 (1022)
Q Consensus 837 -LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~ 886 (1022)
|||||||++ +|...+..+...+.+ +.. ..++++++
T Consensus 169 llllDEPt~~-------------LD~~~~~~l~~~l~~-~~~-~~tii~~s 204 (252)
T PRK14239 169 IILLDEPTSA-------------LDPISAGKIEETLLG-LKD-DYTMLLVT 204 (252)
T ss_pred EEEEcCCccc-------------cCHHHHHHHHHHHHH-Hhh-CCeEEEEE
Confidence 999999996 777777776665544 333 34555555
No 268
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=5.1e-24 Score=225.94 Aligned_cols=176 Identities=10% Similarity=0.121 Sum_probs=126.9
Q ss_pred ceeEEEEecCCCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCC-----CCceEEEEccccc-h-----h
Q 001709 700 LSDVFIFCTSDFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVR-----TINSGNLDAEADD-Q-----E 765 (1022)
Q Consensus 700 l~~~~~~~~~~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~-----PtsG~I~idg~~~-~-----~ 765 (1022)
++++.+.+ +.+++|+++||+|. +++|+|+||||||||+|+|+|++ + |++|+|.++|.++ . .
T Consensus 8 ~~~l~~~~--~~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~---~~~~~~~~~G~i~~~g~~i~~~~~~~~ 82 (251)
T PRK14244 8 VKNLNLWY--GSKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMN---DFVPNCKVKGELDIDGIDVYSVDTNVV 82 (251)
T ss_pred eeeEEEEE--CCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhc---ccCCCCCcceEEEECCEehHhcccchH
Confidence 44444443 34679999999998 99999999999999999999998 6 4799999998654 1 2
Q ss_pred hhcCceEEEcCCCCCCccccccccchHHHHhcccc------c---hHHHHHHHH-HhcCCcc----ccCCCcCCch-HHH
Q 001709 766 GIAGGLCYCDSAGVNLQELTMEAARFKDEMWMGIR------D---LSRKTDLIV-LVHNLSH----KIPRYNYSSA-SGQ 830 (1022)
Q Consensus 766 ~lr~~IGyV~Q~~~~~~~lTV~~~~~~ENI~~g~~------~---~~~~v~~~L-~v~gL~~----~~~r~~~~LS-Gqr 830 (1022)
.+++.++||||+...|+ .|+ +||+.++.. . ..+.+.+++ .+ ||.+ ..++.+.+|| |||
T Consensus 83 ~~~~~i~~v~q~~~~~~-~tv-----~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~~~~~LS~Gq~ 155 (251)
T PRK14244 83 LLRAKVGMVFQKPNPFP-KSI-----YDNVAYGPKLHGLAKNKKKLDEIVEKSLTSV-GLWEELGDRLKDSAFELSGGQQ 155 (251)
T ss_pred HHhhhEEEEecCccccc-CCH-----HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHc-CCCchhhhHhhcChhhCCHHHH
Confidence 35778999999544466 599 999987521 1 234466777 77 8864 4678899999 999
Q ss_pred HHHHHH---------hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCCc-ccccCccccc
Q 001709 831 QQPALS---------LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCPY-VMPGAVSASL 900 (1022)
Q Consensus 831 QRvaIA---------LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~~-V~~~~~~a~~ 900 (1022)
||++|| |||||||++ +|...+..+...+. .+.. ..++++++|... +...++..+.
T Consensus 156 qrv~laral~~~p~llllDEPt~~-------------LD~~~~~~l~~~l~-~~~~-~~tiiiisH~~~~~~~~~d~i~~ 220 (251)
T PRK14244 156 QRLCIARAIAVKPTMLLMDEPCSA-------------LDPVATNVIENLIQ-ELKK-NFTIIVVTHSMKQAKKVSDRVAF 220 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCcc-------------CCHHHHHHHHHHHH-HHhc-CCeEEEEeCCHHHHHhhcCEEEE
Confidence 999999 999999997 67767676665554 3443 345666653332 2333444444
Q ss_pred cc
Q 001709 901 SW 902 (1022)
Q Consensus 901 l~ 902 (1022)
+.
T Consensus 221 l~ 222 (251)
T PRK14244 221 FQ 222 (251)
T ss_pred EE
Confidence 43
No 269
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=5.1e-24 Score=225.40 Aligned_cols=151 Identities=13% Similarity=0.188 Sum_probs=117.5
Q ss_pred CeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCC-----CceEEEEccccc-----hhhhcCceEEEcCC
Q 001709 711 FTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRT-----INSGNLDAEADD-----QEGIAGGLCYCDSA 777 (1022)
Q Consensus 711 ~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~P-----tsG~I~idg~~~-----~~~lr~~IGyV~Q~ 777 (1022)
.+++|++|||+|+ +++|+||||||||||+|+|+|++ +| ++|+|.++|.++ ...+++.++|+||+
T Consensus 15 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~---~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q~ 91 (249)
T PRK14253 15 ENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMN---DLIEGVKITGKLTMDGEDIYGNIDVADLRIKVGMVFQK 91 (249)
T ss_pred CeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhc---ccccCCCCceEEEECCEEcccccchHHHHhheeEEecC
Confidence 4679999999998 99999999999999999999999 75 599999998543 23457789999995
Q ss_pred CCCCccccccccchHHHHhcccc-----c---hHHHHHHHH-HhcCCc----cccCCCcCCch-HHHHHHHHH-------
Q 001709 778 GVNLQELTMEAARFKDEMWMGIR-----D---LSRKTDLIV-LVHNLS----HKIPRYNYSSA-SGQQQPALS------- 836 (1022)
Q Consensus 778 ~~~~~~lTV~~~~~~ENI~~g~~-----~---~~~~v~~~L-~v~gL~----~~~~r~~~~LS-GqrQRvaIA------- 836 (1022)
...|+ .|+ .||+.++.. . ..+++.+++ .+ ++. +..++++.+|| |||||++||
T Consensus 92 ~~~~~-~tv-----~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p 164 (249)
T PRK14253 92 PNPFP-MSI-----YENVAYGLRAQGIKDKKVLDEVVERSLRGA-ALWDEVKDRLKSHAFGLSGGQQQRLCIARTIAMEP 164 (249)
T ss_pred CCcCc-ccH-----HHHHHhHHHhcCCCchHHHHHHHHHHHHHc-CCchhhhHHhhcCcccCCHHHHHHHHHHHHHHcCC
Confidence 44466 899 999987532 1 123455666 55 663 46788999999 999999999
Q ss_pred --hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEe
Q 001709 837 --LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVIN 886 (1022)
Q Consensus 837 --LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~ 886 (1022)
|||||||++ +|...+..+...+.+. .. ..++++++
T Consensus 165 ~llllDEP~~~-------------LD~~~~~~l~~~l~~~-~~-~~tii~~s 201 (249)
T PRK14253 165 DVILMDEPTSA-------------LDPIATHKIEELMEEL-KK-NYTIVIVT 201 (249)
T ss_pred CEEEEeCCCcc-------------CCHHHHHHHHHHHHHH-hc-CCeEEEEe
Confidence 999999997 7777777766655443 33 34666665
No 270
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.91 E-value=9.1e-24 Score=223.60 Aligned_cols=168 Identities=14% Similarity=0.185 Sum_probs=125.0
Q ss_pred ccccCceeEEEEecCCCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcC--CCCCCCCceEEEEccccc----hh
Q 001709 695 IRPEGLSDVFIFCTSDFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQ--GKLVRTINSGNLDAEADD----QE 765 (1022)
Q Consensus 695 i~~~~l~~~~~~~~~~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL--~~~~~PtsG~I~idg~~~----~~ 765 (1022)
+++++++ +.+ +++.+|++|||+++ +++|+|+||||||||+++|+|+ + +|++|+|++++.++ ..
T Consensus 8 l~~~~l~---~~~--~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~---~~~~G~i~~~g~~~~~~~~~ 79 (252)
T CHL00131 8 LEIKNLH---ASV--NENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAY---KILEGDILFKGESILDLEPE 79 (252)
T ss_pred EEEEeEE---EEe--CCEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcC---cCCCceEEECCEEcccCChh
Confidence 5544444 333 24579999999999 9999999999999999999998 5 79999999998654 12
Q ss_pred hhc-CceEEEcCCCCCCccccccccchHHHHhcccc---------c-----hHHHHHHHH-HhcCCc-cccCCCcC-Cch
Q 001709 766 GIA-GGLCYCDSAGVNLQELTMEAARFKDEMWMGIR---------D-----LSRKTDLIV-LVHNLS-HKIPRYNY-SSA 827 (1022)
Q Consensus 766 ~lr-~~IGyV~Q~~~~~~~lTV~~~~~~ENI~~g~~---------~-----~~~~v~~~L-~v~gL~-~~~~r~~~-~LS 827 (1022)
..+ ..++|++|+...++.+|+ .+|+.++.. + ..+++.+++ .+ |+. +..++.+. +||
T Consensus 80 ~~~~~~~~~~~q~~~~~~~~~~-----~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~~~LS 153 (252)
T CHL00131 80 ERAHLGIFLAFQYPIEIPGVSN-----ADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLV-GMDPSFLSRNVNEGFS 153 (252)
T ss_pred hhheeeEEEEeccccccccccH-----HHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHc-CCchhhhccccccCCC
Confidence 222 258899995444888899 898865421 0 124566778 77 997 57888887 599
Q ss_pred -HHHHHHHHH---------hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCCc
Q 001709 828 -SGQQQPALS---------LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCPY 890 (1022)
Q Consensus 828 -GqrQRvaIA---------LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~~ 890 (1022)
|||||++|| |||||||++ +|...+..+...+.+ +.....++++++|...
T Consensus 154 gG~~qrv~la~al~~~p~llllDEPt~~-------------LD~~~~~~l~~~l~~-~~~~g~tii~~tH~~~ 212 (252)
T CHL00131 154 GGEKKRNEILQMALLDSELAILDETDSG-------------LDIDALKIIAEGINK-LMTSENSIILITHYQR 212 (252)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEcCCccc-------------CCHHHHHHHHHHHHH-HHhCCCEEEEEecCHH
Confidence 999999999 999999996 777777777766654 3344456666664433
No 271
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.91 E-value=5.1e-24 Score=249.75 Aligned_cols=176 Identities=17% Similarity=0.103 Sum_probs=133.3
Q ss_pred ceeEEEEecCCCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc----hhhhcCceE
Q 001709 700 LSDVFIFCTSDFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD----QEGIAGGLC 772 (1022)
Q Consensus 700 l~~~~~~~~~~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~----~~~lr~~IG 772 (1022)
++++.+.|. +..++|+|+||+++ +++|+||||||||||+++|+|++ +|++|+|.+||.++ ...++++|+
T Consensus 325 ~~~v~f~y~-~~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~---~~~~G~i~~~g~~~~~~~~~~~~~~i~ 400 (547)
T PRK10522 325 LRNVTFAYQ-DNGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLY---QPQSGEILLDGKPVTAEQPEDYRKLFS 400 (547)
T ss_pred EEEEEEEeC-CCCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC---CCCCeEEEECCEECCCCCHHHHhhheE
Confidence 556555554 34579999999999 99999999999999999999999 99999999998664 457889999
Q ss_pred EEcCCCCCCccccccccchHHHHhccccchHHHHHHHH-HhcCCccccCCC-----cCCch-HHHHHHHHH---------
Q 001709 773 YCDSAGVNLQELTMEAARFKDEMWMGIRDLSRKTDLIV-LVHNLSHKIPRY-----NYSSA-SGQQQPALS--------- 836 (1022)
Q Consensus 773 yV~Q~~~~~~~lTV~~~~~~ENI~~g~~~~~~~v~~~L-~v~gL~~~~~r~-----~~~LS-GqrQRvaIA--------- 836 (1022)
||+| +..++..|+ ++| +....++.+.+++ .+ ++.+..+.. ..+|| |||||++||
T Consensus 401 ~v~q-~~~lf~~ti-----~~n---~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~~i 470 (547)
T PRK10522 401 AVFT-DFHLFDQLL-----GPE---GKPANPALVEKWLERL-KMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDI 470 (547)
T ss_pred EEec-ChhHHHHhh-----ccc---cCchHHHHHHHHHHHc-CCchhhhccccCCCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 9999 555555899 888 2222445677777 66 776554321 46899 999999999
Q ss_pred hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCCcccccCccccccc
Q 001709 837 LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCPYVMPGAVSASLSW 902 (1022)
Q Consensus 837 LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~~V~~~~~~a~~l~ 902 (1022)
||||||||+ +|..+...+...+.+..+....++++++|-...+..+|..+.+.
T Consensus 471 lilDE~ts~-------------LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~~~d~i~~l~ 523 (547)
T PRK10522 471 LLLDEWAAD-------------QDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHADRLLEMR 523 (547)
T ss_pred EEEECCCCC-------------CCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHHhCCEEEEEE
Confidence 999999997 77777777666665554444457777776555555555555543
No 272
>PLN03130 ABC transporter C family member; Provisional
Probab=99.91 E-value=3.3e-24 Score=277.37 Aligned_cols=180 Identities=15% Similarity=0.106 Sum_probs=137.9
Q ss_pred ceeEEEEecCCCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc----hhhhcCceE
Q 001709 700 LSDVFIFCTSDFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD----QEGIAGGLC 772 (1022)
Q Consensus 700 l~~~~~~~~~~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~----~~~lr~~IG 772 (1022)
++++++.|..+..++|+||||+|+ .|||+|+||||||||+++|+|++ +|++|+|++||.++ ...+|++|+
T Consensus 1240 f~nVsf~Y~~~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~---~p~~G~I~IDG~dI~~i~l~~LR~~Is 1316 (1622)
T PLN03130 1240 FEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIV---ELERGRILIDGCDISKFGLMDLRKVLG 1316 (1622)
T ss_pred EEEEEEEeCCCCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcC---CCCCceEEECCEecccCCHHHHHhccE
Confidence 667777775555579999999999 99999999999999999999999 99999999998664 678999999
Q ss_pred EEcCCCCCCccccccccchHHHHhccccchHHHHHHHH-Hh----------cCCccccCCCcCCch-HHHHHHHHH----
Q 001709 773 YCDSAGVNLQELTMEAARFKDEMWMGIRDLSRKTDLIV-LV----------HNLSHKIPRYNYSSA-SGQQQPALS---- 836 (1022)
Q Consensus 773 yV~Q~~~~~~~lTV~~~~~~ENI~~g~~~~~~~v~~~L-~v----------~gL~~~~~r~~~~LS-GqrQRvaIA---- 836 (1022)
|||| ++.++..|+ +|||.++....++.+.+++ .. .||+....+.+.+|| |||||++||
T Consensus 1317 iVpQ-dp~LF~GTI-----reNLd~~~~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALL 1390 (1622)
T PLN03130 1317 IIPQ-APVLFSGTV-----RFNLDPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALL 1390 (1622)
T ss_pred EECC-CCccccccH-----HHHhCcCCCCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHH
Confidence 9999 555445899 9999987543334444444 33 355556667778999 999999999
Q ss_pred -----hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCCcccccCcccccccC
Q 001709 837 -----LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCPYVMPGAVSASLSWG 903 (1022)
Q Consensus 837 -----LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~~V~~~~~~a~~l~~ 903 (1022)
||||||||+ +|..+...+...+.+.. ...|+++|.|-...+..+|..+.+.+
T Consensus 1391 r~p~ILILDEATSa-------------LD~~Te~~Iq~~I~~~~--~~~TvI~IAHRL~tI~~~DrIlVLd~ 1447 (1622)
T PLN03130 1391 RRSKILVLDEATAA-------------VDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIIDCDRILVLDA 1447 (1622)
T ss_pred cCCCEEEEECCCCC-------------CCHHHHHHHHHHHHHHC--CCCEEEEEeCChHHHHhCCEEEEEEC
Confidence 999999997 77777666665554432 23566667554444555666666554
No 273
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=8.7e-24 Score=228.68 Aligned_cols=160 Identities=15% Similarity=0.165 Sum_probs=120.9
Q ss_pred ceeEEEEecCCCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCC-----CceEEEEccccc-----hhh
Q 001709 700 LSDVFIFCTSDFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRT-----INSGNLDAEADD-----QEG 766 (1022)
Q Consensus 700 l~~~~~~~~~~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~P-----tsG~I~idg~~~-----~~~ 766 (1022)
++++.+.+ +.+++|+||||+|+ +++|+||||||||||+|+|+|++ +| ++|+|.+++.++ ...
T Consensus 24 i~nl~~~~--~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~---~p~~~~~~~G~i~~~g~~i~~~~~~~~ 98 (276)
T PRK14271 24 AVNLTLGF--AGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMN---DKVSGYRYSGDVLLGGRSIFNYRDVLE 98 (276)
T ss_pred EeeEEEEE--CCEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccC---CcCCCCCCceEEEECCEEccccchhHH
Confidence 44444444 35689999999998 99999999999999999999999 75 699999998654 124
Q ss_pred hcCceEEEcCCCCCCccccccccchHHHHhcccc-----c---hHHHHHHHH-HhcCCcc----ccCCCcCCch-HHHHH
Q 001709 767 IAGGLCYCDSAGVNLQELTMEAARFKDEMWMGIR-----D---LSRKTDLIV-LVHNLSH----KIPRYNYSSA-SGQQQ 832 (1022)
Q Consensus 767 lr~~IGyV~Q~~~~~~~lTV~~~~~~ENI~~g~~-----~---~~~~v~~~L-~v~gL~~----~~~r~~~~LS-GqrQR 832 (1022)
+++.|+|++|+...|+ +|+ +||+.++.. . ..+++.+++ .+ +|.+ ..++.+.+|| |||||
T Consensus 99 ~~~~i~~v~q~~~l~~-~tv-----~eni~~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~l~~~~~~LSgGq~qr 171 (276)
T PRK14271 99 FRRRVGMLFQRPNPFP-MSI-----MDNVLAGVRAHKLVPRKEFRGVAQARLTEV-GLWDAVKDRLSDSPFRLSGGQQQL 171 (276)
T ss_pred HhhheEEeccCCccCC-ccH-----HHHHHHHHHhccCCCHHHHHHHHHHHHHHc-CCCchhhhHhhCCcccCCHHHHHH
Confidence 5778999999544466 899 999987532 1 123455666 66 7753 5678899999 99999
Q ss_pred HHHH---------hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEe
Q 001709 833 PALS---------LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVIN 886 (1022)
Q Consensus 833 vaIA---------LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~ 886 (1022)
++|| |||||||++ +|...+..+...+. .+.. ..++++++
T Consensus 172 l~LAral~~~p~lllLDEPt~~-------------LD~~~~~~l~~~L~-~~~~-~~tiiivs 219 (276)
T PRK14271 172 LCLARTLAVNPEVLLLDEPTSA-------------LDPTTTEKIEEFIR-SLAD-RLTVIIVT 219 (276)
T ss_pred HHHHHHHhcCCCEEEEcCCccc-------------CCHHHHHHHHHHHH-HHhc-CCEEEEEe
Confidence 9999 999999997 67666666665553 3333 34666665
No 274
>PLN03232 ABC transporter C family member; Provisional
Probab=99.91 E-value=2.8e-24 Score=277.00 Aligned_cols=180 Identities=15% Similarity=0.113 Sum_probs=136.0
Q ss_pred ceeEEEEecCCCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc----hhhhcCceE
Q 001709 700 LSDVFIFCTSDFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD----QEGIAGGLC 772 (1022)
Q Consensus 700 l~~~~~~~~~~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~----~~~lr~~IG 772 (1022)
++++++.|..+..++|+||||+|+ .|||+|+||||||||+++|.|++ +|++|+|.+||.++ ...+|++|+
T Consensus 1237 f~nVsf~Y~~~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~---~p~~G~I~IdG~di~~i~~~~lR~~i~ 1313 (1495)
T PLN03232 1237 FEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIV---ELEKGRIMIDDCDVAKFGLTDLRRVLS 1313 (1495)
T ss_pred EEEEEEEECCCCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC---cCCCceEEECCEEhhhCCHHHHHhhcE
Confidence 667777665555679999999999 99999999999999999999999 99999999998664 678899999
Q ss_pred EEcCCCCCCccccccccchHHHHhccccchHHHHHHHH-Hh----------cCCccccCCCcCCch-HHHHHHHHH----
Q 001709 773 YCDSAGVNLQELTMEAARFKDEMWMGIRDLSRKTDLIV-LV----------HNLSHKIPRYNYSSA-SGQQQPALS---- 836 (1022)
Q Consensus 773 yV~Q~~~~~~~lTV~~~~~~ENI~~g~~~~~~~v~~~L-~v----------~gL~~~~~r~~~~LS-GqrQRvaIA---- 836 (1022)
||+| ++.++..|+ +|||.++....++.+.+++ .. .||+...++...+|| |||||++||
T Consensus 1314 iVpQ-dp~LF~gTI-----r~NL~~~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALL 1387 (1495)
T PLN03232 1314 IIPQ-SPVLFSGTV-----RFNIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALL 1387 (1495)
T ss_pred EECC-CCeeeCccH-----HHHcCCCCCCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHH
Confidence 9999 555445799 9999987543344444444 33 345555667778999 999999999
Q ss_pred -----hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCCcccccCcccccccC
Q 001709 837 -----LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCPYVMPGAVSASLSWG 903 (1022)
Q Consensus 837 -----LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~~V~~~~~~a~~l~~ 903 (1022)
||||||||+ +|..+...+...+.+.. ...|+++|.|-...+..+|..+.+.+
T Consensus 1388 r~~~ILILDEATSa-------------LD~~Te~~Iq~~L~~~~--~~~TvI~IAHRl~ti~~~DrIlVL~~ 1444 (1495)
T PLN03232 1388 RRSKILVLDEATAS-------------VDVRTDSLIQRTIREEF--KSCTMLVIAHRLNTIIDCDKILVLSS 1444 (1495)
T ss_pred hCCCEEEEECCccc-------------CCHHHHHHHHHHHHHHc--CCCEEEEEeCCHHHHHhCCEEEEEEC
Confidence 999999997 77776666555554332 23466666544444445565555543
No 275
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.91 E-value=4.7e-24 Score=276.62 Aligned_cols=168 Identities=16% Similarity=0.192 Sum_probs=135.1
Q ss_pred CCcccccCceeEEEEecCCCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc---hh
Q 001709 692 EKFIRPEGLSDVFIFCTSDFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD---QE 765 (1022)
Q Consensus 692 ~~~i~~~~l~~~~~~~~~~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~---~~ 765 (1022)
...++++++++. +..+++.+|+||||+++ +++|+||||||||||+|+|+|++ +|++|+|.++|.++ ..
T Consensus 926 ~~~L~I~nLsK~---y~~~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl---~PtsG~I~i~G~dI~~~~~ 999 (2272)
T TIGR01257 926 VPGVCVKNLVKI---FEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLL---PPTSGTVLVGGKDIETNLD 999 (2272)
T ss_pred CceEEEEeEEEE---ecCCCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCC---CCCceEEEECCEECcchHH
Confidence 345666666653 32235689999999999 99999999999999999999999 99999999998775 34
Q ss_pred hhcCceEEEcCCCCCCccccccccchHHHHhcccc-------chHHHHHHHH-HhcCCccccCCCcCCch-HHHHHHHHH
Q 001709 766 GIAGGLCYCDSAGVNLQELTMEAARFKDEMWMGIR-------DLSRKTDLIV-LVHNLSHKIPRYNYSSA-SGQQQPALS 836 (1022)
Q Consensus 766 ~lr~~IGyV~Q~~~~~~~lTV~~~~~~ENI~~g~~-------~~~~~v~~~L-~v~gL~~~~~r~~~~LS-GqrQRvaIA 836 (1022)
..|+.|||++|++..++.+|| +|||.|+.+ ..++++++++ .+ ||.+..++++.+|| |||||++||
T Consensus 1000 ~~r~~IG~~pQ~~~L~~~LTV-----~E~L~f~~~lkg~~~~~~~~~v~~lL~~v-gL~~~~~~~~~~LSGGqKQRLsLA 1073 (2272)
T TIGR01257 1000 AVRQSLGMCPQHNILFHHLTV-----AEHILFYAQLKGRSWEEAQLEMEAMLEDT-GLHHKRNEEAQDLSGGMQRKLSVA 1073 (2272)
T ss_pred HHhhcEEEEecCCcCCCCCCH-----HHHHHHHHHhcCCCHHHHHHHHHHHHHHc-CCchhhcCChhhCCHHHHHHHHHH
Confidence 567889999996555888999 999987542 1345678888 88 99999999999999 999999999
Q ss_pred ---------hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEe
Q 001709 837 ---------LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVIN 886 (1022)
Q Consensus 837 ---------LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~ 886 (1022)
|||||||++ +|+..+..+...+.+. + ...++++++
T Consensus 1074 rALi~~PkVLLLDEPTSG-------------LDp~sr~~l~~lL~~l-~-~g~TIIltT 1117 (2272)
T TIGR01257 1074 IAFVGDAKVVVLDEPTSG-------------VDPYSRRSIWDLLLKY-R-SGRTIIMST 1117 (2272)
T ss_pred HHHHcCCCEEEEECCCcC-------------CCHHHHHHHHHHHHHH-h-CCCEEEEEE
Confidence 999999997 7777777777766554 3 333444444
No 276
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.91 E-value=4.8e-24 Score=227.70 Aligned_cols=149 Identities=17% Similarity=0.139 Sum_probs=117.6
Q ss_pred CCeeEEEeeeEEEe--------EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccchhhhcCceEEEcCCCCCC
Q 001709 710 DFTTVFKEVHFRTR--------RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADDQEGIAGGLCYCDSAGVNL 781 (1022)
Q Consensus 710 ~~~~aLkdVSL~V~--------iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~~~~lr~~IGyV~Q~~~~~ 781 (1022)
+..+.+++++|+++ +++|+||||||||||+|+|+|++ +|++|+|.+++. .|+|++|+...+
T Consensus 5 ~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~---~p~~G~i~~~g~--------~i~~~~q~~~~~ 73 (246)
T cd03237 5 TMKKTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVL---KPDEGDIEIELD--------TVSYKPQYIKAD 73 (246)
T ss_pred ccccccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCC---cCCCCeEEECCc--------eEEEecccccCC
Confidence 34457888888884 99999999999999999999999 999999999863 589999943346
Q ss_pred ccccccccchHHHHhccccc---hHHHHHHHH-HhcCCccccCCCcCCch-HHHHHHHHH---------hhhccccCCCh
Q 001709 782 QELTMEAARFKDEMWMGIRD---LSRKTDLIV-LVHNLSHKIPRYNYSSA-SGQQQPALS---------LLLNEAKSLGI 847 (1022)
Q Consensus 782 ~~lTV~~~~~~ENI~~g~~~---~~~~v~~~L-~v~gL~~~~~r~~~~LS-GqrQRvaIA---------LLLDEPTSad~ 847 (1022)
+.+|| .||+.+.... ......+++ .+ +|.+..++++.+|| |||||++|| |||||||++
T Consensus 74 ~~~tv-----~e~l~~~~~~~~~~~~~~~~~l~~l-~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~-- 145 (246)
T cd03237 74 YEGTV-----RDLLSSITKDFYTHPYFKTEIAKPL-QIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAY-- 145 (246)
T ss_pred CCCCH-----HHHHHHHhhhccccHHHHHHHHHHc-CCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCccc--
Confidence 67899 9999754321 223456777 77 99999999999999 999999999 999999996
Q ss_pred hHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecC
Q 001709 848 PWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSC 888 (1022)
Q Consensus 848 ~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~ 888 (1022)
+|...+..+...+.+.......++++++|.
T Consensus 146 -----------LD~~~~~~l~~~l~~~~~~~~~tiiivsHd 175 (246)
T cd03237 146 -----------LDVEQRLMASKVIRRFAENNEKTAFVVEHD 175 (246)
T ss_pred -----------CCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 777777776666654444444566666633
No 277
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=7.8e-24 Score=224.79 Aligned_cols=151 Identities=13% Similarity=0.159 Sum_probs=116.4
Q ss_pred CeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCC--C---CceEEEEccccc-h-----hhhcCceEEEcC
Q 001709 711 FTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVR--T---INSGNLDAEADD-Q-----EGIAGGLCYCDS 776 (1022)
Q Consensus 711 ~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~--P---tsG~I~idg~~~-~-----~~lr~~IGyV~Q 776 (1022)
.+.+|+||||+++ +++|+||||||||||+|+|+|++ + | ++|+|.++|.++ . ...++.|+|++|
T Consensus 18 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~---~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q 94 (253)
T PRK14261 18 EKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMN---DLIPGCRITGDILYNGENIMDSGADVVALRRKIGMVFQ 94 (253)
T ss_pred CeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccc---cCCCCCCcceEEEECCEEccccccchhhhhceEEEEec
Confidence 4679999999999 99999999999999999999997 5 3 489999998664 1 244678999999
Q ss_pred CCCCCccccccccchHHHHhcccc-----c---hHHHHHHHH-HhcCCc----cccCCCcCCch-HHHHHHHHH------
Q 001709 777 AGVNLQELTMEAARFKDEMWMGIR-----D---LSRKTDLIV-LVHNLS----HKIPRYNYSSA-SGQQQPALS------ 836 (1022)
Q Consensus 777 ~~~~~~~lTV~~~~~~ENI~~g~~-----~---~~~~v~~~L-~v~gL~----~~~~r~~~~LS-GqrQRvaIA------ 836 (1022)
+...|+ .|| +||+.++.. . .++.+.+++ .+ ++. +..++.+.+|| |||||++||
T Consensus 95 ~~~~~~-~tv-----~eni~~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~ 167 (253)
T PRK14261 95 RPNPFP-KSI-----YENVAYGPRIHGEKNKKTLDTIVEKSLKGA-ALWDEVKDRLHDSALSLSGGQQQRLCIARTLAVN 167 (253)
T ss_pred CCccCc-ccH-----HHHHHhhHHhcCCCCHHHHHHHHHHHHHHh-cCchhhHHHhhcChhhCCHHHHHHHHHHHHHhcC
Confidence 544466 599 999988643 1 133456666 65 663 45789999999 999999999
Q ss_pred ---hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEe
Q 001709 837 ---LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVIN 886 (1022)
Q Consensus 837 ---LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~ 886 (1022)
|||||||++ +|...+..+...+.+ +.. ..++++++
T Consensus 168 p~lllLDEP~~g-------------LD~~~~~~l~~~l~~-~~~-~~tvii~s 205 (253)
T PRK14261 168 PEVILMDEPCSA-------------LDPIATAKIEDLIED-LKK-EYTVIIVT 205 (253)
T ss_pred CCEEEEeCCccc-------------CCHHHHHHHHHHHHH-Hhh-CceEEEEE
Confidence 999999997 677777766655543 333 34666665
No 278
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=9.3e-24 Score=223.84 Aligned_cols=152 Identities=13% Similarity=0.187 Sum_probs=116.6
Q ss_pred CeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCC--C---CceEEEEccccc------hhhhcCceEEEcC
Q 001709 711 FTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVR--T---INSGNLDAEADD------QEGIAGGLCYCDS 776 (1022)
Q Consensus 711 ~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~--P---tsG~I~idg~~~------~~~lr~~IGyV~Q 776 (1022)
.+++|+++||+|. +++|+||||||||||+++|+|++ + | ++|+|.++|.++ ....++.++|++|
T Consensus 17 ~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~---~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q 93 (252)
T PRK14255 17 KFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMN---DLIPGVTITGNVSLRGQNIYAPNEDVVQLRKQVGMVFQ 93 (252)
T ss_pred CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhccc---ccCCCCCcccEEEEcCEEcccccccHHHhcCeEEEEEC
Confidence 4679999999998 99999999999999999999997 4 4 589999998654 1245678999999
Q ss_pred CCCCCccccccccchHHHHhcccc-----c---hHHHHHHHH-HhcCC----ccccCCCcCCch-HHHHHHHHH------
Q 001709 777 AGVNLQELTMEAARFKDEMWMGIR-----D---LSRKTDLIV-LVHNL----SHKIPRYNYSSA-SGQQQPALS------ 836 (1022)
Q Consensus 777 ~~~~~~~lTV~~~~~~ENI~~g~~-----~---~~~~v~~~L-~v~gL----~~~~~r~~~~LS-GqrQRvaIA------ 836 (1022)
+...++ .|+ +||+.++.. . ..+++.+++ .+ ++ .+..++.+.+|| |||||++||
T Consensus 94 ~~~~~~-~tv-----~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~i~~~~~~~~~~LS~Gq~qrv~laral~~~ 166 (252)
T PRK14255 94 QPNPFP-FSI-----YENVIYGLRLAGVKDKAVLDEAVETSLKQA-AIWDEVKDHLHESALSLSGGQQQRVCIARVLAVK 166 (252)
T ss_pred CCccCC-CcH-----HHHHHHHHHHcCCCCHHHHHHHHHHHHHHc-CCccchhhHHhcCcccCCHHHHHHHHHHHHHhcC
Confidence 544466 799 999987532 1 123455556 55 55 356788999999 999999999
Q ss_pred ---hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEec
Q 001709 837 ---LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINS 887 (1022)
Q Consensus 837 ---LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~ 887 (1022)
|||||||++ +|...+..+...+.+. .. ..++++++|
T Consensus 167 p~llllDEPt~~-------------LD~~~~~~l~~~l~~~-~~-~~tii~vsH 205 (252)
T PRK14255 167 PDVILLDEPTSA-------------LDPISSTQIENMLLEL-RD-QYTIILVTH 205 (252)
T ss_pred CCEEEEcCCCcc-------------CCHHHHHHHHHHHHHH-Hh-CCEEEEEEC
Confidence 999999997 7777777766666544 33 246666653
No 279
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=7.2e-24 Score=224.36 Aligned_cols=154 Identities=16% Similarity=0.183 Sum_probs=116.9
Q ss_pred CeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCC-----ceEEEEccccc------hhhhcCceEEEcC
Q 001709 711 FTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTI-----NSGNLDAEADD------QEGIAGGLCYCDS 776 (1022)
Q Consensus 711 ~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~Pt-----sG~I~idg~~~------~~~lr~~IGyV~Q 776 (1022)
.+++|+||||+|+ +++|+||||||||||+|+|+|++ +|+ +|+|.++|.++ ....++.|+|++|
T Consensus 16 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~---~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q 92 (252)
T PRK14272 16 DKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMH---DLTPGARVTGRILLDGQDIYGPRVDPVAMRRRVGMVFQ 92 (252)
T ss_pred CEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccC---CCCcCCCCceeEEECCEEcccCccCHHHhhceeEEEec
Confidence 4679999999999 99999999999999999999999 774 89999998554 1245678999999
Q ss_pred CCCCCccccccccchHHHHhcccc-----c---hHHHHHHHH-HhcCC----ccccCCCcCCch-HHHHHHHHH------
Q 001709 777 AGVNLQELTMEAARFKDEMWMGIR-----D---LSRKTDLIV-LVHNL----SHKIPRYNYSSA-SGQQQPALS------ 836 (1022)
Q Consensus 777 ~~~~~~~lTV~~~~~~ENI~~g~~-----~---~~~~v~~~L-~v~gL----~~~~~r~~~~LS-GqrQRvaIA------ 836 (1022)
+...++.+|+ .||+.++.. . ..+.+.+++ .+ ++ .+..++++.+|| |||||++||
T Consensus 93 ~~~~~~~~t~-----~enl~~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~ 166 (252)
T PRK14272 93 KPNPFPTMSV-----FDNVVAGLKLAGIRDRDHLMEVAERSLRGA-ALWDEVKDRLKTPATGLSGGQQQRLCIARALAVE 166 (252)
T ss_pred cCccCcCCCH-----HHHHHHHHHhcCCCCHHHHHHHHHHHHHHc-CcchhhhhhhcCCcccCCHHHHHHHHHHHHHhcC
Confidence 5444777899 999986532 1 123344445 44 43 356688999999 999999999
Q ss_pred ---hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecC
Q 001709 837 ---LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSC 888 (1022)
Q Consensus 837 ---LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~ 888 (1022)
|||||||++ +|...+..+...+. .+.. ..++++++|.
T Consensus 167 p~llllDEP~~~-------------LD~~~~~~l~~~l~-~~~~-~~tiii~sH~ 206 (252)
T PRK14272 167 PEILLMDEPTSA-------------LDPASTARIEDLMT-DLKK-VTTIIIVTHN 206 (252)
T ss_pred CCEEEEeCCCcc-------------CCHHHHHHHHHHHH-HHhc-CCeEEEEeCC
Confidence 999999997 67777666666554 4443 3455555533
No 280
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=4.3e-24 Score=248.24 Aligned_cols=180 Identities=14% Similarity=0.116 Sum_probs=133.8
Q ss_pred ccccCceeEEEEecC-CCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCC-CCceEEEEccccc-----h
Q 001709 695 IRPEGLSDVFIFCTS-DFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVR-TINSGNLDAEADD-----Q 764 (1022)
Q Consensus 695 i~~~~l~~~~~~~~~-~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~-PtsG~I~idg~~~-----~ 764 (1022)
+++++++. .+.. ++.++|+||||+|+ +++|+||||||||||+|+|+|++ + |++|+|.+++.++ .
T Consensus 260 l~~~~l~~---~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~---~~~~~G~i~~~g~~~~~~~~~ 333 (506)
T PRK13549 260 LEVRNLTA---WDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAY---PGRWEGEIFIDGKPVKIRNPQ 333 (506)
T ss_pred EEEecCcc---ccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCC---CCCCCcEEEECCEECCCCCHH
Confidence 55555653 2221 23569999999999 99999999999999999999999 8 5999999998654 1
Q ss_pred hhhcCceEEEcCCCC---CCccccccccchHHHHhcccc---------c---hHHHHHHHH-HhcCCc-cccCCCcCCch
Q 001709 765 EGIAGGLCYCDSAGV---NLQELTMEAARFKDEMWMGIR---------D---LSRKTDLIV-LVHNLS-HKIPRYNYSSA 827 (1022)
Q Consensus 765 ~~lr~~IGyV~Q~~~---~~~~lTV~~~~~~ENI~~g~~---------~---~~~~v~~~L-~v~gL~-~~~~r~~~~LS 827 (1022)
...+++||||+|+.. .++++|+ .||+.++.. + ..+++++++ .+ +|. +..++++.+||
T Consensus 334 ~~~~~~i~~v~q~~~~~~~~~~~tv-----~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~~LS 407 (506)
T PRK13549 334 QAIAQGIAMVPEDRKRDGIVPVMGV-----GKNITLAALDRFTGGSRIDDAAELKTILESIQRL-KVKTASPELAIARLS 407 (506)
T ss_pred HHHHCCCEEeCcchhhCCCcCCCCH-----HHHhhhhhhhhhccCcccChHHHHHHHHHHHHhc-CccCCCcccccccCC
Confidence 234678999999532 3677999 999976421 1 234577888 87 996 57899999999
Q ss_pred -HHHHHHHHH---------hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCCcccccCcc
Q 001709 828 -SGQQQPALS---------LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCPYVMPGAVS 897 (1022)
Q Consensus 828 -GqrQRvaIA---------LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~~V~~~~~~ 897 (1022)
||||||+|| |||||||++ +|...+..+...+.+ +.....++++++ |+.+.
T Consensus 408 gG~kqrv~lA~al~~~p~lllLDEPt~~-------------LD~~~~~~l~~~l~~-l~~~g~tvi~~s------Hd~~~ 467 (506)
T PRK13549 408 GGNQQKAVLAKCLLLNPKILILDEPTRG-------------IDVGAKYEIYKLINQ-LVQQGVAIIVIS------SELPE 467 (506)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEcCCCCC-------------cCHhHHHHHHHHHHH-HHHCCCEEEEEC------CCHHH
Confidence 999999999 999999997 777777777666544 444444555555 44444
Q ss_pred cccccCCCC
Q 001709 898 ASLSWGASG 906 (1022)
Q Consensus 898 a~~l~~~~~ 906 (1022)
+..+++++.
T Consensus 468 ~~~~~d~v~ 476 (506)
T PRK13549 468 VLGLSDRVL 476 (506)
T ss_pred HHHhCCEEE
Confidence 444455443
No 281
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.91 E-value=7.9e-24 Score=228.06 Aligned_cols=165 Identities=13% Similarity=0.202 Sum_probs=122.0
Q ss_pred CcccccCceeEEEEecCCCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCC-----CCceEEEEccccc-
Q 001709 693 KFIRPEGLSDVFIFCTSDFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVR-----TINSGNLDAEADD- 763 (1022)
Q Consensus 693 ~~i~~~~l~~~~~~~~~~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~-----PtsG~I~idg~~~- 763 (1022)
..+.+++++ +.+ +..++|+|+||+|+ +++|+|+||||||||+++|+|++ + |++|+|.++|.++
T Consensus 23 ~~l~~~~l~---~~~--~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~---~~~~~~~~~G~i~~~g~~~~ 94 (271)
T PRK14238 23 VVFDTQNLN---LWY--GEDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMV---ELVPSVKTTGKILYRDQNIF 94 (271)
T ss_pred eEEEEeeeE---EEE--CCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhc---cCCCCCCCceeEEECCEEcc
Confidence 346655555 333 24579999999999 99999999999999999999998 7 6999999998654
Q ss_pred -----hhhhcCceEEEcCCCCCCccccccccchHHHHhcccc-----c---hHHHHHHHH-Hh---cCCccccCCCcCCc
Q 001709 764 -----QEGIAGGLCYCDSAGVNLQELTMEAARFKDEMWMGIR-----D---LSRKTDLIV-LV---HNLSHKIPRYNYSS 826 (1022)
Q Consensus 764 -----~~~lr~~IGyV~Q~~~~~~~lTV~~~~~~ENI~~g~~-----~---~~~~v~~~L-~v---~gL~~~~~r~~~~L 826 (1022)
...+++.|+|+||+...|+ .|+ .||+.++.. . ..+.+.+++ .+ .++.+..++++.+|
T Consensus 95 ~~~~~~~~~~~~i~~v~q~~~~~~-~tv-----~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~L 168 (271)
T PRK14238 95 DKSYSVEELRTNVGMVFQKPNPFP-KSI-----YDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGL 168 (271)
T ss_pred cccccHHHHhhhEEEEecCCcccc-ccH-----HHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccC
Confidence 2245678999999443355 699 999987532 1 122344555 43 13456678999999
Q ss_pred h-HHHHHHHHH---------hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEe
Q 001709 827 A-SGQQQPALS---------LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVIN 886 (1022)
Q Consensus 827 S-GqrQRvaIA---------LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~ 886 (1022)
| |||||++|| |||||||++ +|...+..+...+.+ +.. ..++++++
T Consensus 169 SgGe~qrv~laraL~~~p~lllLDEPt~~-------------LD~~~~~~l~~~l~~-~~~-~~tiiivs 223 (271)
T PRK14238 169 SGGQQQRLCIARCLAIEPDVILMDEPTSA-------------LDPISTLKVEELVQE-LKK-DYSIIIVT 223 (271)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCCCc-------------CCHHHHHHHHHHHHH-HHc-CCEEEEEE
Confidence 9 999999999 999999996 777777776665544 343 34555555
No 282
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.91 E-value=1.1e-23 Score=212.38 Aligned_cols=127 Identities=22% Similarity=0.248 Sum_probs=103.9
Q ss_pred CeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc---hhhhcCceEEEcCCCCCCccc
Q 001709 711 FTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD---QEGIAGGLCYCDSAGVNLQEL 784 (1022)
Q Consensus 711 ~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~---~~~lr~~IGyV~Q~~~~~~~l 784 (1022)
..++|+++||+++ +++|+||||||||||+|+|+|++ +|++|+|.+++.+. ....++.++|+||+...++.+
T Consensus 12 ~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~ 88 (173)
T cd03230 12 KKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLL---KPDSGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENL 88 (173)
T ss_pred CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC---CCCCeEEEECCEEcccchHhhhccEEEEecCCccccCC
Confidence 3579999999999 99999999999999999999999 99999999998664 234567899999954447778
Q ss_pred cccccchHHHHhccccchHHHHHHHHHhcCCccccCCCcCCch-HHHHHHHHH---------hhhccccCCChhHHHHHh
Q 001709 785 TMEAARFKDEMWMGIRDLSRKTDLIVLVHNLSHKIPRYNYSSA-SGQQQPALS---------LLLNEAKSLGIPWVLAIT 854 (1022)
Q Consensus 785 TV~~~~~~ENI~~g~~~~~~~v~~~L~v~gL~~~~~r~~~~LS-GqrQRvaIA---------LLLDEPTSad~~~v~~I~ 854 (1022)
|+ .||+. || |||||++|| |||||||++
T Consensus 89 tv-----~~~~~-----------------------------LS~G~~qrv~laral~~~p~illlDEPt~~--------- 125 (173)
T cd03230 89 TV-----RENLK-----------------------------LSGGMKQRLALAQALLHDPELLILDEPTSG--------- 125 (173)
T ss_pred cH-----HHHhh-----------------------------cCHHHHHHHHHHHHHHcCCCEEEEeCCccC---------
Confidence 99 88873 99 999999999 999999997
Q ss_pred hhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecC
Q 001709 855 NKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSC 888 (1022)
Q Consensus 855 ~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~ 888 (1022)
+|...+..+...+.+..+ ...++++++|.
T Consensus 126 ----LD~~~~~~l~~~l~~~~~-~g~tiii~th~ 154 (173)
T cd03230 126 ----LDPESRREFWELLRELKK-EGKTILLSSHI 154 (173)
T ss_pred ----CCHHHHHHHHHHHHHHHH-CCCEEEEECCC
Confidence 777777777766654433 33455555533
No 283
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=1e-23 Score=225.54 Aligned_cols=162 Identities=12% Similarity=0.166 Sum_probs=121.6
Q ss_pred ceeEEEEecCCCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCC-----ceEEEEccccc------hh
Q 001709 700 LSDVFIFCTSDFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTI-----NSGNLDAEADD------QE 765 (1022)
Q Consensus 700 l~~~~~~~~~~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~Pt-----sG~I~idg~~~------~~ 765 (1022)
++++.+.+ +...+|+||||+++ +++|+|+||||||||+++|+|++ +|+ +|+|.+++.++ ..
T Consensus 10 ~~nl~~~~--~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~---~~~g~i~~~G~i~~~g~~i~~~~~~~~ 84 (261)
T PRK14258 10 VNNLSFYY--DTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMN---ELESEVRVEGRVEFFNQNIYERRVNLN 84 (261)
T ss_pred EeeEEEEe--CCeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhccc---CCCCCccccceEEECCEEhhccccchH
Confidence 44444333 34579999999998 99999999999999999999999 885 89999998653 12
Q ss_pred hhcCceEEEcCCCCCCccccccccchHHHHhcccc-----c---hHHHHHHHH-HhcCCc----cccCCCcCCch-HHHH
Q 001709 766 GIAGGLCYCDSAGVNLQELTMEAARFKDEMWMGIR-----D---LSRKTDLIV-LVHNLS----HKIPRYNYSSA-SGQQ 831 (1022)
Q Consensus 766 ~lr~~IGyV~Q~~~~~~~lTV~~~~~~ENI~~g~~-----~---~~~~v~~~L-~v~gL~----~~~~r~~~~LS-GqrQ 831 (1022)
.+++.++|++|+...|+ +|+ +||+.++.. . ..+++.+++ .+ ++. +..++++.+|| ||||
T Consensus 85 ~~~~~i~~~~q~~~l~~-~tv-----~enl~~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~~~~~LSgGq~q 157 (261)
T PRK14258 85 RLRRQVSMVHPKPNLFP-MSV-----YDNVAYGVKIVGWRPKLEIDDIVESALKDA-DLWDEIKHKIHKSALDLSGGQQQ 157 (261)
T ss_pred HhhccEEEEecCCccCc-ccH-----HHHHHHHHHhcCCCcHHHHHHHHHHHHHHc-CCcchhhhHhcCCcccCCHHHHH
Confidence 45678999999544466 899 999986421 1 234566777 66 763 45789999999 9999
Q ss_pred HHHHH---------hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEe
Q 001709 832 QPALS---------LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVIN 886 (1022)
Q Consensus 832 RvaIA---------LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~ 886 (1022)
|++|| |||||||++ +|...+..+...+.+.......++++++
T Consensus 158 rv~laral~~~p~vllLDEP~~~-------------LD~~~~~~l~~~l~~l~~~~~~tiiivs 208 (261)
T PRK14258 158 RLCIARALAVKPKVLLMDEPCFG-------------LDPIASMKVESLIQSLRLRSELTMVIVS 208 (261)
T ss_pred HHHHHHHHhcCCCEEEEeCCCcc-------------CCHHHHHHHHHHHHHHHHhCCCEEEEEE
Confidence 99999 999999996 6777777766666543333344566665
No 284
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.91 E-value=6.9e-24 Score=247.76 Aligned_cols=168 Identities=15% Similarity=0.091 Sum_probs=128.7
Q ss_pred CeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc-h---h---hhcCceEEEcCCCC-
Q 001709 711 FTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD-Q---E---GIAGGLCYCDSAGV- 779 (1022)
Q Consensus 711 ~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~-~---~---~lr~~IGyV~Q~~~- 779 (1022)
.+++|++|||+|+ +++|+||||||||||+|+|+|++ + ++|+|+++|.++ . . ..+++||||||+..
T Consensus 298 ~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~---~-~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~ 373 (529)
T PRK15134 298 HNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLI---N-SQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNS 373 (529)
T ss_pred cceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcC---C-CCcEEEECCEEccccchhhHHHhhhceEEEEeCchh
Confidence 3579999999998 99999999999999999999998 4 899999998654 1 1 23567999999542
Q ss_pred -CCccccccccchHHHHhcccc------c---hHHHHHHHH-HhcCCc-cccCCCcCCch-HHHHHHHHH---------h
Q 001709 780 -NLQELTMEAARFKDEMWMGIR------D---LSRKTDLIV-LVHNLS-HKIPRYNYSSA-SGQQQPALS---------L 837 (1022)
Q Consensus 780 -~~~~lTV~~~~~~ENI~~g~~------~---~~~~v~~~L-~v~gL~-~~~~r~~~~LS-GqrQRvaIA---------L 837 (1022)
.++.+|| .||+.++.. . ..+++.+++ .+ ||. +..++++.+|| ||||||+|| |
T Consensus 374 ~l~~~~tv-----~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~ll 447 (529)
T PRK15134 374 SLNPRLNV-----LQIIEEGLRVHQPTLSAAQREQQVIAVMEEV-GLDPETRHRYPAEFSGGQRQRIAIARALILKPSLI 447 (529)
T ss_pred hcCCcccH-----HHHHHHHHHhccccCChHHHHHHHHHHHHHc-CCCHHHHhcCCccCCHHHHHHHHHHHHHhCCCCEE
Confidence 3677899 999987531 1 235677888 87 997 57899999999 999999999 9
Q ss_pred hhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCCcccccCcccccccCCCCC
Q 001709 838 LLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCPYVMPGAVSASLSWGASGG 907 (1022)
Q Consensus 838 LLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~~V~~~~~~a~~l~~~~~~ 907 (1022)
||||||++ +|...+..+...+.+..++...++++++ |+.+.+..+++++..
T Consensus 448 llDEPt~~-------------LD~~~~~~l~~~l~~~~~~~~~tvi~vs------Hd~~~~~~~~d~i~~ 498 (529)
T PRK15134 448 ILDEPTSS-------------LDKTVQAQILALLKSLQQKHQLAYLFIS------HDLHVVRALCHQVIV 498 (529)
T ss_pred EeeCCccc-------------cCHHHHHHHHHHHHHHHHhhCCEEEEEe------CCHHHHHHhcCeEEE
Confidence 99999997 7777777777766554333344566665 444444444554433
No 285
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.90 E-value=1.4e-24 Score=224.05 Aligned_cols=170 Identities=15% Similarity=0.113 Sum_probs=137.2
Q ss_pred CCCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc----hhhhcCceEEEcCCCCCC
Q 001709 709 SDFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD----QEGIAGGLCYCDSAGVNL 781 (1022)
Q Consensus 709 ~~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~----~~~lr~~IGyV~Q~~~~~ 781 (1022)
++.+.+|+|||++|+ +++|||||||||||||.++++|. +.++|+|+++|.++ ...+.+.++++-|....-
T Consensus 11 y~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~---~~d~G~i~i~g~~~~~~~s~~LAk~lSILkQ~N~i~ 87 (252)
T COG4604 11 YGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLL---KKDSGEITIDGLELTSTPSKELAKKLSILKQENHIN 87 (252)
T ss_pred hCCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhc---cccCceEEEeeeecccCChHHHHHHHHHHHhhchhh
Confidence 367899999999999 99999999999999999999999 99999999998665 567889999999943335
Q ss_pred ccccccccchHHHHhccccc---------hHHHHHHHH-HhcCCccccCCCcCCch-HHHHHHHHH---------hhhcc
Q 001709 782 QELTMEAARFKDEMWMGIRD---------LSRKTDLIV-LVHNLSHKIPRYNYSSA-SGQQQPALS---------LLLNE 841 (1022)
Q Consensus 782 ~~lTV~~~~~~ENI~~g~~~---------~~~~v~~~L-~v~gL~~~~~r~~~~LS-GqrQRvaIA---------LLLDE 841 (1022)
..+|| +|-+.||+.+ +...+++++ .+ +|.+..+|+..+|| |||||..|| +||||
T Consensus 88 ~rlTV-----~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl-~L~~l~dryLd~LSGGQrQRAfIAMVlaQdTdyvlLDE 161 (252)
T COG4604 88 SRLTV-----RDLVGFGRFPYSQGRLTKEDRRIINEAIEYL-HLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDE 161 (252)
T ss_pred heeEH-----HHHhhcCCCcccCCCCchHHHHHHHHHHHHh-cccchHHHhHHhcccchhhhhhhheeeeccCcEEEecC
Confidence 56999 9999999862 567799999 66 99999999999999 999999999 99999
Q ss_pred ccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCCcccccCcccccccCCCC
Q 001709 842 AKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCPYVMPGAVSASLSWGASG 906 (1022)
Q Consensus 842 PTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~~V~~~~~~a~~l~~~~~ 906 (1022)
|.+. +|-.+-..++..+.+...+-..++++| +|++.-|...+|...
T Consensus 162 PLNN-------------LDmkHsv~iMk~Lrrla~el~KtiviV------lHDINfAS~YsD~IV 207 (252)
T COG4604 162 PLNN-------------LDMKHSVQIMKILRRLADELGKTIVVV------LHDINFASCYSDHIV 207 (252)
T ss_pred cccc-------------cchHHHHHHHHHHHHHHHHhCCeEEEE------EecccHHHhhhhhee
Confidence 9985 444444444444444444555566655 367776666666554
No 286
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.90 E-value=1.5e-23 Score=225.80 Aligned_cols=163 Identities=13% Similarity=0.193 Sum_probs=123.1
Q ss_pred cccccCceeEEEEecCCCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCC-----CCceEEEEccccc--
Q 001709 694 FIRPEGLSDVFIFCTSDFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVR-----TINSGNLDAEADD-- 763 (1022)
Q Consensus 694 ~i~~~~l~~~~~~~~~~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~-----PtsG~I~idg~~~-- 763 (1022)
.+.+++++ +.+ +..++|+|+||+|+ +++|+||||||||||+|+|+|++ + |++|+|.++|.++
T Consensus 25 ~l~~~nl~---~~~--~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~---~~~~~~~~~G~i~i~g~~i~~ 96 (272)
T PRK14236 25 ALEVRNLN---LFY--GDKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMN---DLVDNCRIEGEIRLDGQNIYD 96 (272)
T ss_pred EEEEEEEE---EEE--CCeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcC---CCccCCCCceEEEECCEECcc
Confidence 45545454 333 34579999999998 99999999999999999999998 6 4899999998654
Q ss_pred ----hhhhcCceEEEcCCCCCCccccccccchHHHHhcccc-----c---hHHHHHHHH-HhcCCc----cccCCCcCCc
Q 001709 764 ----QEGIAGGLCYCDSAGVNLQELTMEAARFKDEMWMGIR-----D---LSRKTDLIV-LVHNLS----HKIPRYNYSS 826 (1022)
Q Consensus 764 ----~~~lr~~IGyV~Q~~~~~~~lTV~~~~~~ENI~~g~~-----~---~~~~v~~~L-~v~gL~----~~~~r~~~~L 826 (1022)
....++.++|++|+...|+ .|+ +||+.++.. . ..+++.+++ .+ ++. +..++.+.+|
T Consensus 97 ~~~~~~~~~~~i~~v~q~~~l~~-~tv-----~enl~~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~~~~~L 169 (272)
T PRK14236 97 KKVDVAELRRRVGMVFQRPNPFP-KSI-----YENVVYGLRLQGINNRRVLDEAVERSLRGA-ALWDEVKDRLHENAFGL 169 (272)
T ss_pred cccCHHHHhccEEEEecCCccCc-ccH-----HHHHHHHHHhcCCCcHHHHHHHHHHHHHHc-CCChhHHHHhhCCcccC
Confidence 1245788999999444466 499 999987532 1 234566777 65 774 4678899999
Q ss_pred h-HHHHHHHHH---------hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEe
Q 001709 827 A-SGQQQPALS---------LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVIN 886 (1022)
Q Consensus 827 S-GqrQRvaIA---------LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~ 886 (1022)
| |||||++|| |||||||++ +|...+..+...+.+. .. ..++++++
T Consensus 170 S~Gq~qrv~laral~~~p~lllLDEPt~g-------------LD~~~~~~l~~~L~~~-~~-~~tiiivt 224 (272)
T PRK14236 170 SGGQQQRLVIARAIAIEPEVLLLDEPTSA-------------LDPISTLKIEELITEL-KS-KYTIVIVT 224 (272)
T ss_pred CHHHHHHHHHHHHHHCCCCEEEEeCCccc-------------CCHHHHHHHHHHHHHH-Hh-CCeEEEEe
Confidence 9 999999999 999999997 6766766666655444 33 34556665
No 287
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=1.4e-23 Score=226.72 Aligned_cols=178 Identities=13% Similarity=0.163 Sum_probs=129.0
Q ss_pred cccccCceeEEEEecCCCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCC-----CceEEEEccccc--
Q 001709 694 FIRPEGLSDVFIFCTSDFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRT-----INSGNLDAEADD-- 763 (1022)
Q Consensus 694 ~i~~~~l~~~~~~~~~~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~P-----tsG~I~idg~~~-- 763 (1022)
.+.+++++ +.+ +.+++|++|||+|+ +++|+||||||||||+++|+|++ +| ++|+|.++|.++
T Consensus 20 ~l~~~nl~---~~~--~~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~---~~~~~~~~~G~i~~~g~~l~~ 91 (274)
T PRK14265 20 VFEVEGVK---VFY--GGFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMN---DLIPGAKVEGRLLYRDRNIYD 91 (274)
T ss_pred eEEEeeEE---EEe--CCeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhccc---ccccCCCcCceEEECCEeccc
Confidence 45545554 333 34579999999999 99999999999999999999998 63 689999998654
Q ss_pred ----hhhhcCceEEEcCCCCCCccccccccchHHHHhcccc------chHHHHHHHH-HhcCC----ccccCCCcCCch-
Q 001709 764 ----QEGIAGGLCYCDSAGVNLQELTMEAARFKDEMWMGIR------DLSRKTDLIV-LVHNL----SHKIPRYNYSSA- 827 (1022)
Q Consensus 764 ----~~~lr~~IGyV~Q~~~~~~~lTV~~~~~~ENI~~g~~------~~~~~v~~~L-~v~gL----~~~~~r~~~~LS- 827 (1022)
...++++|+|+||+...|+ .|+ .||+.++.. ...+.+.+++ .+ ++ .+..++++.+||
T Consensus 92 ~~~~~~~~~~~i~~v~q~~~l~~-~tv-----~~nl~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~l~~~~~~~~~~LSg 164 (274)
T PRK14265 92 SQINSVKLRRQVGMVFQRPNPFP-KSI-----YENIAFAPRANGYKGNLDELVEDSLRRA-AIWEEVKDKLKEKGTALSG 164 (274)
T ss_pred ccchhHHHhhcEEEEccCCcccc-ccH-----HHHHHhHHHhcCchHHHHHHHHHHHHHc-ccchhhHHHhcCCcccCCH
Confidence 1245678999999443365 599 999987642 1223445556 55 65 356789999999
Q ss_pred HHHHHHHHH---------hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCC-cccccCcc
Q 001709 828 SGQQQPALS---------LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCP-YVMPGAVS 897 (1022)
Q Consensus 828 GqrQRvaIA---------LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~-~V~~~~~~ 897 (1022)
|||||++|| |||||||++ +|...+..+...+.+. .. ..++++++|.. .+...++.
T Consensus 165 Gq~qrv~LAraL~~~p~lllLDEPt~~-------------LD~~~~~~l~~~L~~~-~~-~~tiii~sH~~~~~~~~~d~ 229 (274)
T PRK14265 165 GQQQRLCIARAIAMKPDVLLMDEPCSA-------------LDPISTRQVEELCLEL-KE-QYTIIMVTHNMQQASRVADW 229 (274)
T ss_pred HHHHHHHHHHHHhhCCCEEEEeCCccc-------------CCHHHHHHHHHHHHHH-hc-CCEEEEEeCCHHHHHHhCCE
Confidence 999999999 999999997 7777777777766554 33 34556664333 34344455
Q ss_pred cccc
Q 001709 898 ASLS 901 (1022)
Q Consensus 898 a~~l 901 (1022)
.+.+
T Consensus 230 i~~l 233 (274)
T PRK14265 230 TAFF 233 (274)
T ss_pred EEEE
Confidence 5544
No 288
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.90 E-value=1.4e-23 Score=224.12 Aligned_cols=183 Identities=15% Similarity=0.090 Sum_probs=125.5
Q ss_pred CCcccccCceeEEEEecCCCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc----h
Q 001709 692 EKFIRPEGLSDVFIFCTSDFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD----Q 764 (1022)
Q Consensus 692 ~~~i~~~~l~~~~~~~~~~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~----~ 764 (1022)
...+++++++ +.+......+|++|||+|+ +++|+|+||||||||+|+|+|++ +|++|+|.+++.++ .
T Consensus 17 ~~~i~~~~l~---~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~---~~~~G~i~i~g~~i~~~~~ 90 (257)
T cd03288 17 GGEIKIHDLC---VRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMV---DIFDGKIVIDGIDISKLPL 90 (257)
T ss_pred CceEEEEEEE---EEeCCCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHccc---CCCCCeEEECCEEhhhCCH
Confidence 3445544444 4443223579999999998 99999999999999999999999 99999999998664 2
Q ss_pred hhhcCceEEEcCCCCCCccccccccchHHHHhccccchHHHHHHHH-Hh----------cCCccccCCCcCCch-HHHHH
Q 001709 765 EGIAGGLCYCDSAGVNLQELTMEAARFKDEMWMGIRDLSRKTDLIV-LV----------HNLSHKIPRYNYSSA-SGQQQ 832 (1022)
Q Consensus 765 ~~lr~~IGyV~Q~~~~~~~lTV~~~~~~ENI~~g~~~~~~~v~~~L-~v----------~gL~~~~~r~~~~LS-GqrQR 832 (1022)
..+++.|+|++|+...|+ .|+ +||+.+........+.+++ .+ .|+.+..++++.+|| |||||
T Consensus 91 ~~~~~~i~~v~q~~~l~~-~tv-----~~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qr 164 (257)
T cd03288 91 HTLRSRLSIILQDPILFS-GSI-----RFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQL 164 (257)
T ss_pred HHHhhhEEEECCCCcccc-cHH-----HHhcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHH
Confidence 356788999999543354 699 9998754321122222222 21 145555667788999 99999
Q ss_pred HHHH---------hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCCcccccCcccccc
Q 001709 833 PALS---------LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCPYVMPGAVSASLS 901 (1022)
Q Consensus 833 vaIA---------LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~~V~~~~~~a~~l 901 (1022)
++|| |||||||++ +|...+..+...+.+ +.. ..++++++|....+..++..+++
T Consensus 165 l~laral~~~p~llllDEPt~g-------------LD~~~~~~l~~~l~~-~~~-~~tiii~sh~~~~~~~~dri~~l 227 (257)
T cd03288 165 FCLARAFVRKSSILIMDEATAS-------------IDMATENILQKVVMT-AFA-DRTVVTIAHRVSTILDADLVLVL 227 (257)
T ss_pred HHHHHHHhcCCCEEEEeCCccC-------------CCHHHHHHHHHHHHH-hcC-CCEEEEEecChHHHHhCCEEEEE
Confidence 9999 999999997 677766666555543 332 34555555333333334444333
No 289
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.90 E-value=7.2e-24 Score=245.69 Aligned_cols=167 Identities=14% Similarity=0.112 Sum_probs=128.3
Q ss_pred CeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCC-CceEEEEccccc-----hhhhcCceEEEcCCC---
Q 001709 711 FTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRT-INSGNLDAEADD-----QEGIAGGLCYCDSAG--- 778 (1022)
Q Consensus 711 ~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~P-tsG~I~idg~~~-----~~~lr~~IGyV~Q~~--- 778 (1022)
+..+|+||||+|+ +++|+||||||||||||+|+|++ +| ++|+|.+++.++ ...++++||||+|+.
T Consensus 272 ~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~---~p~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~ 348 (500)
T TIGR02633 272 HRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAY---PGKFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRH 348 (500)
T ss_pred cccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCC---CCCCCeEEEECCEECCCCCHHHHHhCCCEEcCcchhhC
Confidence 3569999999999 99999999999999999999999 85 899999998654 134567899999953
Q ss_pred CCCccccccccchHHHHhcccc---------c---hHHHHHHHH-HhcCCcc-ccCCCcCCch-HHHHHHHHH-------
Q 001709 779 VNLQELTMEAARFKDEMWMGIR---------D---LSRKTDLIV-LVHNLSH-KIPRYNYSSA-SGQQQPALS------- 836 (1022)
Q Consensus 779 ~~~~~lTV~~~~~~ENI~~g~~---------~---~~~~v~~~L-~v~gL~~-~~~r~~~~LS-GqrQRvaIA------- 836 (1022)
..++++|+ +||+.++.. . .++++++++ .+ +|.+ ..++++.+|| |||||++||
T Consensus 349 ~l~~~~tv-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~~LSgGqkqrv~la~al~~~p 422 (500)
T TIGR02633 349 GIVPILGV-----GKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRL-KVKTASPFLPIGRLSGGNQQKAVLAKMLLTNP 422 (500)
T ss_pred CcCCCCCH-----HHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhc-CccCCCccCccccCCHHHHHHHHHHHHHhhCC
Confidence 24788999 999987421 1 134577788 77 9974 6899999999 999999999
Q ss_pred --hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCCcccccCcccccccCCCC
Q 001709 837 --LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCPYVMPGAVSASLSWGASG 906 (1022)
Q Consensus 837 --LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~~V~~~~~~a~~l~~~~~ 906 (1022)
|||||||++ +|...+..+...+. .+.....++++++ |+.+.+..+++++.
T Consensus 423 ~lllLDEPt~~-------------LD~~~~~~l~~~l~-~l~~~g~tviivs------Hd~~~~~~~~d~v~ 474 (500)
T TIGR02633 423 RVLILDEPTRG-------------VDVGAKYEIYKLIN-QLAQEGVAIIVVS------SELAEVLGLSDRVL 474 (500)
T ss_pred CEEEEcCCCCC-------------cCHhHHHHHHHHHH-HHHhCCCEEEEEC------CCHHHHHHhCCEEE
Confidence 999999997 67777777666554 4444444555555 55554444555444
No 290
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=1.9e-23 Score=224.12 Aligned_cols=167 Identities=15% Similarity=0.162 Sum_probs=126.5
Q ss_pred CCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCC-----CceEEEEccccc-h-----hhhcCceEEEc
Q 001709 710 DFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRT-----INSGNLDAEADD-Q-----EGIAGGLCYCD 775 (1022)
Q Consensus 710 ~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~P-----tsG~I~idg~~~-~-----~~lr~~IGyV~ 775 (1022)
+..++|+++||+++ +++|+|+||||||||+|+|+|++ +| ++|+|+++|.++ . ..+++.|+|+|
T Consensus 19 ~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~---~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~ 95 (261)
T PRK14263 19 GNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMN---DLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGMVF 95 (261)
T ss_pred CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHccc---ccccCCCCceEEEECCEeccccccchHhhhhceEEEe
Confidence 45689999999999 99999999999999999999999 76 799999998654 1 24567899999
Q ss_pred CCCCCCccccccccchHHHHhcccc------chHHHHHHHH-HhcCCcc----ccCCCcCCch-HHHHHHHHH-------
Q 001709 776 SAGVNLQELTMEAARFKDEMWMGIR------DLSRKTDLIV-LVHNLSH----KIPRYNYSSA-SGQQQPALS------- 836 (1022)
Q Consensus 776 Q~~~~~~~lTV~~~~~~ENI~~g~~------~~~~~v~~~L-~v~gL~~----~~~r~~~~LS-GqrQRvaIA------- 836 (1022)
|+...| .+|+ .||+.++.. ...+++.+++ .+ +|.+ ..++++.+|| |||||++||
T Consensus 96 q~~~~~-~~tv-----~enl~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~i~~~~~~~~~~LS~G~~qrv~laral~~~p 168 (261)
T PRK14263 96 QQPNPF-SMSI-----FDNVAFGLRLNRYKGDLGDRVKHALQGA-ALWDEVKDKLKVSGLSLSGGQQQRLCIARAIATEP 168 (261)
T ss_pred cCCccc-cccH-----HHHHHHHHhhcCchHHHHHHHHHHHHHc-CCchhhhhhhhCCcccCCHHHHHHHHHHHHHHcCC
Confidence 944335 5999 999987642 1235677778 66 7743 4567889999 999999999
Q ss_pred --hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCCc-ccccCcccccc
Q 001709 837 --LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCPY-VMPGAVSASLS 901 (1022)
Q Consensus 837 --LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~~-V~~~~~~a~~l 901 (1022)
|||||||++ +|...+..+...+.+. .. ..++++++|... +...++..+++
T Consensus 169 ~llllDEPtsg-------------LD~~~~~~l~~~l~~~-~~-~~tii~isH~~~~i~~~~d~v~~l 221 (261)
T PRK14263 169 EVLLLDEPCSA-------------LDPIATRRVEELMVEL-KK-DYTIALVTHNMQQAIRVADTTAFF 221 (261)
T ss_pred CEEEEeCCCcc-------------CCHHHHHHHHHHHHHH-hc-CCeEEEEeCCHHHHHHhCCEEEEE
Confidence 999999997 7777777777666544 33 345555554333 34445555555
No 291
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.90 E-value=1.6e-23 Score=212.10 Aligned_cols=134 Identities=22% Similarity=0.215 Sum_probs=106.1
Q ss_pred CeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc-h-----hhhcCceEEEcCCCCCC
Q 001709 711 FTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD-Q-----EGIAGGLCYCDSAGVNL 781 (1022)
Q Consensus 711 ~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~-~-----~~lr~~IGyV~Q~~~~~ 781 (1022)
.+++++++||+++ +++|+||||||||||+|+|+|++ +|++|+|.+++.++ . ...++.++|++|+...+
T Consensus 12 ~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~---~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 88 (178)
T cd03229 12 QKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLE---EPDSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALF 88 (178)
T ss_pred CeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC---CCCceEEEECCEEccccchhHHHHhhcEEEEecCCccC
Confidence 4679999999998 99999999999999999999999 99999999998654 1 24567899999954447
Q ss_pred ccccccccchHHHHhccccchHHHHHHHHHhcCCccccCCCcCCch-HHHHHHHHH---------hhhccccCCChhHHH
Q 001709 782 QELTMEAARFKDEMWMGIRDLSRKTDLIVLVHNLSHKIPRYNYSSA-SGQQQPALS---------LLLNEAKSLGIPWVL 851 (1022)
Q Consensus 782 ~~lTV~~~~~~ENI~~g~~~~~~~v~~~L~v~gL~~~~~r~~~~LS-GqrQRvaIA---------LLLDEPTSad~~~v~ 851 (1022)
+.+|+ +||+.+. || |||||++|| |||||||++
T Consensus 89 ~~~t~-----~~~l~~~---------------------------lS~G~~qr~~la~al~~~p~llilDEP~~~------ 130 (178)
T cd03229 89 PHLTV-----LENIALG---------------------------LSGGQQQRVALARALAMDPDVLLLDEPTSA------ 130 (178)
T ss_pred CCCCH-----HHheeec---------------------------CCHHHHHHHHHHHHHHCCCCEEEEeCCccc------
Confidence 77899 8888542 99 999999999 999999996
Q ss_pred HHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCCccc
Q 001709 852 AITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCPYVM 892 (1022)
Q Consensus 852 ~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~~V~ 892 (1022)
+|...+..+...+.+..++...++++++|....+
T Consensus 131 -------LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~ 164 (178)
T cd03229 131 -------LDPITRREVRALLKSLQAQLGITVVLVTHDLDEA 164 (178)
T ss_pred -------CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 7777777776666544332234566665443333
No 292
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.90 E-value=1.5e-23 Score=245.04 Aligned_cols=153 Identities=14% Similarity=0.149 Sum_probs=115.8
Q ss_pred eeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCC-----CceEEEEccccc-h---h---hhc-CceEEEc
Q 001709 712 TTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRT-----INSGNLDAEADD-Q---E---GIA-GGLCYCD 775 (1022)
Q Consensus 712 ~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~P-----tsG~I~idg~~~-~---~---~lr-~~IGyV~ 775 (1022)
+++|+||||+|. +++|+||||||||||+|+|+|++ +| ++|+|.++|.++ . . ..+ ++|||||
T Consensus 22 ~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~---~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~ 98 (529)
T PRK15134 22 RTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLL---PSPPVVYPSGDIRFHGESLLHASEQTLRGVRGNKIAMIF 98 (529)
T ss_pred eeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCC---CCCcCCccceEEEECCEecccCCHHHHHHHhcCceEEEe
Confidence 579999999998 99999999999999999999999 76 799999998664 1 1 123 5799999
Q ss_pred CCCC--CCccccccccchHHHHhccc------c--chHHHHHHHH-HhcCCcc---ccCCCcCCch-HHHHHHHHH----
Q 001709 776 SAGV--NLQELTMEAARFKDEMWMGI------R--DLSRKTDLIV-LVHNLSH---KIPRYNYSSA-SGQQQPALS---- 836 (1022)
Q Consensus 776 Q~~~--~~~~lTV~~~~~~ENI~~g~------~--~~~~~v~~~L-~v~gL~~---~~~r~~~~LS-GqrQRvaIA---- 836 (1022)
|+.. .++.+|+ .+|+.++. . ...+++++++ .+ ||.+ ..++++.+|| ||||||+||
T Consensus 99 Q~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-gl~~~~~~~~~~~~~LSgGe~qrv~iAraL~ 172 (529)
T PRK15134 99 QEPMVSLNPLHTL-----EKQLYEVLSLHRGMRREAARGEILNCLDRV-GIRQAAKRLTDYPHQLSGGERQRVMIAMALL 172 (529)
T ss_pred cCchhhcCchhhH-----HHHHHHHHHHhcCCCHHHHHHHHHHHHHHC-CCCChHHHHhhCCcccCHHHHHHHHHHHHHh
Confidence 9543 2456788 88886421 1 1346678888 77 9975 4689999999 999999999
Q ss_pred -----hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEe
Q 001709 837 -----LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVIN 886 (1022)
Q Consensus 837 -----LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~ 886 (1022)
|||||||++ +|...+..+...+.+.......++++++
T Consensus 173 ~~p~llllDEPt~~-------------LD~~~~~~l~~~l~~l~~~~g~tvi~vt 214 (529)
T PRK15134 173 TRPELLIADEPTTA-------------LDVSVQAQILQLLRELQQELNMGLLFIT 214 (529)
T ss_pred cCCCEEEEcCCCCc-------------cCHHHHHHHHHHHHHHHHhcCCeEEEEc
Confidence 999999997 5555666555544443222233445554
No 293
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=2.1e-23 Score=228.85 Aligned_cols=163 Identities=14% Similarity=0.182 Sum_probs=122.8
Q ss_pred cccccCceeEEEEecCCCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCC-----CCceEEEEccccc--
Q 001709 694 FIRPEGLSDVFIFCTSDFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVR-----TINSGNLDAEADD-- 763 (1022)
Q Consensus 694 ~i~~~~l~~~~~~~~~~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~-----PtsG~I~idg~~~-- 763 (1022)
.+.+++++ +.+ +..++|+++||+|+ +++|+|+|||||||||++|+|++ + |++|+|.++|.++
T Consensus 45 ~l~i~nl~---~~~--~~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~---~~~~~~p~~G~I~i~g~~i~~ 116 (305)
T PRK14264 45 KLSVEDLD---VYY--GDDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMN---DRIKAARIDGSVELDGQDIYQ 116 (305)
T ss_pred eEEEEEEE---EEe--CCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccc---cccCCCCCceEEEECCEEccc
Confidence 45544544 333 34679999999999 99999999999999999999998 6 6899999998654
Q ss_pred ----hhhhcCceEEEcCCCCCCccccccccchHHHHhcccc-------------------c-hHHHHHHHH-HhcCCc--
Q 001709 764 ----QEGIAGGLCYCDSAGVNLQELTMEAARFKDEMWMGIR-------------------D-LSRKTDLIV-LVHNLS-- 816 (1022)
Q Consensus 764 ----~~~lr~~IGyV~Q~~~~~~~lTV~~~~~~ENI~~g~~-------------------~-~~~~v~~~L-~v~gL~-- 816 (1022)
...+++.|+||+|+...++ .|+ +||+.++.. . ..+++.+++ .+ ++.
T Consensus 117 ~~~~~~~~~~~i~~v~q~~~l~~-~tv-----~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~ 189 (305)
T PRK14264 117 DGVNLVELRKRVGMVFQSPNPFP-KSI-----RENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQA-ALWDE 189 (305)
T ss_pred ccccHHHHhhceEEEccCCcccc-ccH-----HHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHc-CCchh
Confidence 1245678999999443365 699 999987531 0 134566777 66 663
Q ss_pred --cccCCCcCCch-HHHHHHHHH---------hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEE
Q 001709 817 --HKIPRYNYSSA-SGQQQPALS---------LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEV 884 (1022)
Q Consensus 817 --~~~~r~~~~LS-GqrQRvaIA---------LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vV 884 (1022)
+..++++.+|| |||||++|| |||||||++ +|...+..+...+.+ +... .++++
T Consensus 190 ~~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsg-------------LD~~~~~~l~~~L~~-~~~~-~tiii 254 (305)
T PRK14264 190 VNDRLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASA-------------LDPIATSKIEDLIEE-LAEE-YTVVV 254 (305)
T ss_pred hhHHhcCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCccc-------------CCHHHHHHHHHHHHH-HhcC-CEEEE
Confidence 56789999999 999999999 999999997 777777766655544 4332 45556
Q ss_pred Ee
Q 001709 885 IN 886 (1022)
Q Consensus 885 v~ 886 (1022)
++
T Consensus 255 vt 256 (305)
T PRK14264 255 VT 256 (305)
T ss_pred EE
Confidence 65
No 294
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.90 E-value=1e-23 Score=270.69 Aligned_cols=180 Identities=11% Similarity=0.097 Sum_probs=134.6
Q ss_pred ceeEEEEecCC-CeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEc-cccc----hhhhcCc
Q 001709 700 LSDVFIFCTSD-FTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDA-EADD----QEGIAGG 770 (1022)
Q Consensus 700 l~~~~~~~~~~-~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~id-g~~~----~~~lr~~ 770 (1022)
++++.+.|... ..++|+||||+|+ +++|+||||||||||+++|+|++ +|++|+|+++ +.++ ...+|++
T Consensus 385 ~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~---~p~~G~I~i~~g~~i~~~~~~~lr~~ 461 (1466)
T PTZ00265 385 FKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLY---DPTEGDIIINDSHNLKDINLKWWRSK 461 (1466)
T ss_pred EEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhc---cCCCCeEEEeCCcchhhCCHHHHHHh
Confidence 55666655432 3479999999999 99999999999999999999999 9999999995 5543 4567899
Q ss_pred eEEEcCCCCCCccccccccchHHHHhcccc--------------------------------------------------
Q 001709 771 LCYCDSAGVNLQELTMEAARFKDEMWMGIR-------------------------------------------------- 800 (1022)
Q Consensus 771 IGyV~Q~~~~~~~lTV~~~~~~ENI~~g~~-------------------------------------------------- 800 (1022)
||||+|++.+|. .|+ +|||.+|..
T Consensus 462 Ig~V~Q~~~LF~-~TI-----~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 535 (1466)
T PTZ00265 462 IGVVSQDPLLFS-NSI-----KNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELI 535 (1466)
T ss_pred ccEecccccchh-ccH-----HHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhhh
Confidence 999999433355 799 999999741
Q ss_pred --------chHHHHHHHH-HhcCCccc-----------cCCCcCCch-HHHHHHHHH---------hhhccccCCChhHH
Q 001709 801 --------DLSRKTDLIV-LVHNLSHK-----------IPRYNYSSA-SGQQQPALS---------LLLNEAKSLGIPWV 850 (1022)
Q Consensus 801 --------~~~~~v~~~L-~v~gL~~~-----------~~r~~~~LS-GqrQRvaIA---------LLLDEPTSad~~~v 850 (1022)
..++.+.+++ .+ ++.++ .++.+.+|| |||||++|| ||||||||+
T Consensus 536 ~~~~~~~~~~~~~v~~a~~~~-~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSa----- 609 (1466)
T PTZ00265 536 EMRKNYQTIKDSEVVDVSKKV-LIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSS----- 609 (1466)
T ss_pred hcccccccCCHHHHHHHHHHh-CcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccc-----
Confidence 0123455555 44 55443 467788999 999999999 999999997
Q ss_pred HHHhhhhcccHHHHHHHHHHHHHHHHh-CCCeEEEEecCCcccccCcccccccC
Q 001709 851 LAITNKFSVSAHQQRAAIDAVMQAYQA-SPSTTEVINSCPYVMPGAVSASLSWG 903 (1022)
Q Consensus 851 ~~I~~~~~ld~~~~~~~i~~ll~~~~~-t~~~~vVv~~~~~V~~~~~~a~~l~~ 903 (1022)
+|...+..+...+. .+.. ...+++++.|-...+..+|..+.+.+
T Consensus 610 --------LD~~se~~i~~~L~-~~~~~~g~TvIiIsHrls~i~~aD~Iivl~~ 654 (1466)
T PTZ00265 610 --------LDNKSEYLVQKTIN-NLKGNENRITIIIAHRLSTIRYANTIFVLSN 654 (1466)
T ss_pred --------cCHHHHHHHHHHHH-HHhhcCCCEEEEEeCCHHHHHhCCEEEEEeC
Confidence 77777666665553 3433 34577777655555567777777765
No 295
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.90 E-value=1.9e-23 Score=211.19 Aligned_cols=139 Identities=14% Similarity=0.201 Sum_probs=107.6
Q ss_pred eeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc---hhhhcCceEEEcCCCCCCcccc
Q 001709 712 TTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD---QEGIAGGLCYCDSAGVNLQELT 785 (1022)
Q Consensus 712 ~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~---~~~lr~~IGyV~Q~~~~~~~lT 785 (1022)
.++|+|+||+++ +++|+||||||||||+|+|+|++ +|++|+|.+++.++ ...+++.++|++|+...++ .|
T Consensus 15 ~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~-~t 90 (178)
T cd03247 15 QQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDL---KPQQGEITLDGVPVSDLEKALSSLISVLNQRPYLFD-TT 90 (178)
T ss_pred ccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccC---CCCCCEEEECCEEHHHHHHHHHhhEEEEccCCeeec-cc
Confidence 369999999998 99999999999999999999999 99999999998765 2345778999999433354 78
Q ss_pred ccccchHHHHhccccchHHHHHHHHHhcCCccccCCCcCCch-HHHHHHHHH---------hhhccccCCChhHHHHHhh
Q 001709 786 MEAARFKDEMWMGIRDLSRKTDLIVLVHNLSHKIPRYNYSSA-SGQQQPALS---------LLLNEAKSLGIPWVLAITN 855 (1022)
Q Consensus 786 V~~~~~~ENI~~g~~~~~~~v~~~L~v~gL~~~~~r~~~~LS-GqrQRvaIA---------LLLDEPTSad~~~v~~I~~ 855 (1022)
+ +||+ +.+|| |||||++|| |||||||++
T Consensus 91 v-----~~~i---------------------------~~~LS~G~~qrv~laral~~~p~~lllDEP~~~---------- 128 (178)
T cd03247 91 L-----RNNL---------------------------GRRFSGGERQRLALARILLQDAPIVLLDEPTVG---------- 128 (178)
T ss_pred H-----HHhh---------------------------cccCCHHHHHHHHHHHHHhcCCCEEEEECCccc----------
Confidence 9 8887 67899 999999999 999999996
Q ss_pred hhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCCcccccCcccccc
Q 001709 856 KFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCPYVMPGAVSASLS 901 (1022)
Q Consensus 856 ~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~~V~~~~~~a~~l 901 (1022)
+|...+..+...+.+. . ...++++++|....+..++..+.+
T Consensus 129 ---LD~~~~~~l~~~l~~~-~-~~~tii~~sh~~~~~~~~d~~~~l 169 (178)
T cd03247 129 ---LDPITERQLLSLIFEV-L-KDKTLIWITHHLTGIEHMDKILFL 169 (178)
T ss_pred ---CCHHHHHHHHHHHHHH-c-CCCEEEEEecCHHHHHhCCEEEEE
Confidence 7777777776666443 3 344556665333333334444333
No 296
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.90 E-value=2e-23 Score=222.03 Aligned_cols=149 Identities=15% Similarity=0.113 Sum_probs=118.6
Q ss_pred EEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc----hhhhcCceEEEcCCCCCCccccc
Q 001709 714 VFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD----QEGIAGGLCYCDSAGVNLQELTM 786 (1022)
Q Consensus 714 aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~----~~~lr~~IGyV~Q~~~~~~~lTV 786 (1022)
+|+||||+++ +++|+||||||||||+++|+|++ + .+|+|.++|.++ ...+++.++|+||+...++.+|+
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~---~-~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv 86 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLL---P-GSGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPV 86 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCC---C-CCeEEEECCEecCcCCHHHHhhheEEecccCccCCCccH
Confidence 7999999999 99999999999999999999998 5 489999998654 23456679999995445677899
Q ss_pred cccchHHHHhcccc---c---hHHHHHHHH-HhcCCccccCCCcCCch-HHHHHHHHH--h--------------hhccc
Q 001709 787 EAARFKDEMWMGIR---D---LSRKTDLIV-LVHNLSHKIPRYNYSSA-SGQQQPALS--L--------------LLNEA 842 (1022)
Q Consensus 787 ~~~~~~ENI~~g~~---~---~~~~v~~~L-~v~gL~~~~~r~~~~LS-GqrQRvaIA--L--------------LLDEP 842 (1022)
++|+.++.. . ..+++++++ .+ ||.+..++++.+|| |||||++|| | |||||
T Consensus 87 -----~~nl~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllDEP 160 (248)
T PRK03695 87 -----FQYLTLHQPDKTRTEAVASALNEVAEAL-GLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEP 160 (248)
T ss_pred -----HHHHHhcCccCCCcHHHHHHHHHHHHHc-CCHhHhcCCcccCCHHHHHHHHHHHHHhccccccCCCCCEEEEcCC
Confidence 999987632 1 245677888 77 99988999999999 999999998 3 68999
Q ss_pred cCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEe
Q 001709 843 KSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVIN 886 (1022)
Q Consensus 843 TSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~ 886 (1022)
|++ +|...+..+...+. .+.....++++++
T Consensus 161 t~~-------------LD~~~~~~l~~~L~-~~~~~~~tvi~~s 190 (248)
T PRK03695 161 MNS-------------LDVAQQAALDRLLS-ELCQQGIAVVMSS 190 (248)
T ss_pred ccc-------------CCHHHHHHHHHHHH-HHHhCCCEEEEEe
Confidence 996 77777666665554 4444444555555
No 297
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.90 E-value=1.4e-23 Score=246.91 Aligned_cols=179 Identities=15% Similarity=0.063 Sum_probs=136.7
Q ss_pred ceeEEEEecCC---CeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc----hhhhcC
Q 001709 700 LSDVFIFCTSD---FTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD----QEGIAG 769 (1022)
Q Consensus 700 l~~~~~~~~~~---~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~----~~~lr~ 769 (1022)
++++.+.|... ..++|+|+||+++ +++|+||||||||||+++|+|++ +|++|+|.+||.++ ...+++
T Consensus 340 ~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~---~p~~G~i~~~g~~i~~~~~~~~~~ 416 (555)
T TIGR01194 340 LKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLY---IPQEGEILLDGAAVSADSRDDYRD 416 (555)
T ss_pred EEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCC---CCCCcEEEECCEECCCCCHHHHHh
Confidence 56666665432 2369999999999 99999999999999999999999 99999999998664 456789
Q ss_pred ceEEEcCCCCCCccccccccchHHHHhccccchHHHHHHHH-HhcCCccccCCCc------CCch-HHHHHHHHH-----
Q 001709 770 GLCYCDSAGVNLQELTMEAARFKDEMWMGIRDLSRKTDLIV-LVHNLSHKIPRYN------YSSA-SGQQQPALS----- 836 (1022)
Q Consensus 770 ~IGyV~Q~~~~~~~lTV~~~~~~ENI~~g~~~~~~~v~~~L-~v~gL~~~~~r~~------~~LS-GqrQRvaIA----- 836 (1022)
.|+||+| +..++..|+ ++|+. ....++++.+++ .+ ++.++.++.+ ..|| |||||++||
T Consensus 417 ~i~~v~q-~~~lf~~ti-----~~n~~--~~~~~~~~~~~~~~~-~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall~ 487 (555)
T TIGR01194 417 LFSAIFA-DFHLFDDLI-----GPDEG--EHASLDNAQQYLQRL-EIADKVKIEDGGFSTTTALSTGQQKRLALICAWLE 487 (555)
T ss_pred hCcEEcc-Chhhhhhhh-----hcccc--cchhHHHHHHHHHHc-CCchhhcccccccCCcccCCHHHHHHHHHHHHHHc
Confidence 9999999 555555789 88852 122455677788 76 8887665543 4699 999999999
Q ss_pred ----hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCCcccccCcccccccC
Q 001709 837 ----LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCPYVMPGAVSASLSWG 903 (1022)
Q Consensus 837 ----LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~~V~~~~~~a~~l~~ 903 (1022)
||||||||+ +|.+++..+...+++.......+++++.|-...+..+|..+.+.+
T Consensus 488 ~~~ililDE~ts~-------------LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~~~d~i~~l~~ 545 (555)
T TIGR01194 488 DRPILLFDEWAAD-------------QDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQIIKLAA 545 (555)
T ss_pred CCCEEEEeCCccC-------------CCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEEC
Confidence 999999997 788887777766655444445677777766555556666555543
No 298
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.90 E-value=9.2e-24 Score=245.07 Aligned_cols=189 Identities=13% Similarity=0.154 Sum_probs=138.9
Q ss_pred cccccCceeEEEEecCCCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCC----ceEEEEccccc---
Q 001709 694 FIRPEGLSDVFIFCTSDFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTI----NSGNLDAEADD--- 763 (1022)
Q Consensus 694 ~i~~~~l~~~~~~~~~~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~Pt----sG~I~idg~~~--- 763 (1022)
.+++++|+..|... .+...+++||||+|. ++||||.|||||||+.++|+|++ ++. +|+|.++|.++
T Consensus 5 lL~V~nL~v~~~~~-~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll---~~~~~~~~G~I~~~g~dl~~l 80 (539)
T COG1123 5 LLEVENLTVEFATD-GGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLL---PEGGRITSGEVILDGRDLLGL 80 (539)
T ss_pred eEEEeceEEEEecC-CcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccC---CCCCcccceEEEECCcchhcC
Confidence 46777787644332 233579999999998 99999999999999999999999 766 79999998764
Q ss_pred -h---hhh-cCceEEEcCCCCC-C-ccccccccchHHHHhcccc----chHHHHHHHH-HhcCCccccC--CCcCCch-H
Q 001709 764 -Q---EGI-AGGLCYCDSAGVN-L-QELTMEAARFKDEMWMGIR----DLSRKTDLIV-LVHNLSHKIP--RYNYSSA-S 828 (1022)
Q Consensus 764 -~---~~l-r~~IGyV~Q~~~~-~-~~lTV~~~~~~ENI~~g~~----~~~~~v~~~L-~v~gL~~~~~--r~~~~LS-G 828 (1022)
. ..+ .+.|+||||++.. | |-+|| +.|+.|-+..... +.++++.++| +| ||.+... +||++|| |
T Consensus 81 ~~~~~r~~rg~~Ia~i~Q~p~~slnP~~tI-g~Qi~E~~~~h~~~~~~ea~~~a~elL~~V-gl~~~~~~~~yPheLSGG 158 (539)
T COG1123 81 SEREMRKLRGKRIAMIFQDPMTSLNPVMTI-GDQIREALRLHGKGSRAEARKRAVELLEQV-GLPDPERRDRYPHQLSGG 158 (539)
T ss_pred CHHHHHHhccccEEEEecCchhhcCchhhH-HHHHHHHHHHhccccHHHHHHHHHHHHHHc-CCCChhhhccCCcccCch
Confidence 1 122 3679999995544 4 55788 5666666655432 2567788899 88 9987655 4999999 9
Q ss_pred HHHHHHHH---------hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCCcccccCcccc
Q 001709 829 GQQQPALS---------LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCPYVMPGAVSAS 899 (1022)
Q Consensus 829 qrQRvaIA---------LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~~V~~~~~~a~ 899 (1022)
|||||.|| ||+||||++ +|..+|..+++.+.+..++..-.+++++ |+..-+.
T Consensus 159 ~rQRv~iAmALa~~P~LLIaDEPTTa-------------LDvt~q~qIL~llk~l~~e~g~a~l~IT------HDl~Vva 219 (539)
T COG1123 159 MRQRVMIAMALALKPKLLIADEPTTA-------------LDVTTQAQILDLLKDLQRELGMAVLFIT------HDLGVVA 219 (539)
T ss_pred HHHHHHHHHHHhCCCCEEEECCCccc-------------cCHHHHHHHHHHHHHHHHHcCcEEEEEc------CCHHHHH
Confidence 99999999 999999997 6777777777666555544433444444 4444445
Q ss_pred cccCCCCC
Q 001709 900 LSWGASGG 907 (1022)
Q Consensus 900 ~l~~~~~~ 907 (1022)
+++||+.+
T Consensus 220 ~~aDrv~V 227 (539)
T COG1123 220 ELADRVVV 227 (539)
T ss_pred HhcCeEEE
Confidence 55665553
No 299
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=2.1e-23 Score=223.31 Aligned_cols=153 Identities=13% Similarity=0.193 Sum_probs=118.9
Q ss_pred CCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEcc------ccc----hhhhcCceEEEcC
Q 001709 710 DFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAE------ADD----QEGIAGGLCYCDS 776 (1022)
Q Consensus 710 ~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg------~~~----~~~lr~~IGyV~Q 776 (1022)
+.+.+|+||||++. +++|+||||||||||+++|+|++ +|++|+|.++| .+. ....++.|+|++|
T Consensus 21 ~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~---~~~~G~v~~~G~~~~~g~~~~~~~~~~~~~~i~~~~q 97 (257)
T PRK14246 21 NDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLI---EIYDSKIKVDGKVLYFGKDIFQIDAIKLRKEVGMVFQ 97 (257)
T ss_pred CCceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC---CCCcCceeEcCEEEECCcccccCCHHHHhcceEEEcc
Confidence 45789999999998 99999999999999999999999 99997776664 332 2345788999999
Q ss_pred CCCCCccccccccchHHHHhcccc-----c---hHHHHHHHH-HhcCCc----cccCCCcCCch-HHHHHHHHH------
Q 001709 777 AGVNLQELTMEAARFKDEMWMGIR-----D---LSRKTDLIV-LVHNLS----HKIPRYNYSSA-SGQQQPALS------ 836 (1022)
Q Consensus 777 ~~~~~~~lTV~~~~~~ENI~~g~~-----~---~~~~v~~~L-~v~gL~----~~~~r~~~~LS-GqrQRvaIA------ 836 (1022)
+...++.+|+ .||+.++.. . ..+++.+++ .+ ++. +..++.+..|| |||||++||
T Consensus 98 ~~~~~~~~tv-----~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~ 171 (257)
T PRK14246 98 QPNPFPHLSI-----YDNIAYPLKSHGIKEKREIKKIVEECLRKV-GLWKEVYDRLNSPASQLSGGQQQRLTIARALALK 171 (257)
T ss_pred CCccCCCCcH-----HHHHHHHHHhcCCCCHHHHHHHHHHHHHHc-CCCccchhhhcCCcccCCHHHHHHHHHHHHHHcC
Confidence 5444777899 999987532 1 224566777 66 885 45788999999 999999999
Q ss_pred ---hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEe
Q 001709 837 ---LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVIN 886 (1022)
Q Consensus 837 ---LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~ 886 (1022)
|||||||++ +|...+..+...+.+. .. ..++++++
T Consensus 172 P~llllDEPt~~-------------LD~~~~~~l~~~l~~~-~~-~~tiilvs 209 (257)
T PRK14246 172 PKVLLMDEPTSM-------------IDIVNSQAIEKLITEL-KN-EIAIVIVS 209 (257)
T ss_pred CCEEEEcCCCcc-------------CCHHHHHHHHHHHHHH-hc-CcEEEEEE
Confidence 999999996 6777777666666443 33 34565555
No 300
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.90 E-value=3e-23 Score=218.86 Aligned_cols=159 Identities=12% Similarity=0.165 Sum_probs=114.1
Q ss_pred CeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc----hhh-hcCceEEEcCCCCCCc
Q 001709 711 FTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD----QEG-IAGGLCYCDSAGVNLQ 782 (1022)
Q Consensus 711 ~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~----~~~-lr~~IGyV~Q~~~~~~ 782 (1022)
.+++|++|||+|+ +++|+||||||||||+|+|+|++ .++|++|+|.++|.++ ... .++.++|++|+...++
T Consensus 13 ~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~ 91 (248)
T PRK09580 13 DKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGRE-DYEVTGGTVEFKGKDLLELSPEDRAGEGIFMAFQYPVEIP 91 (248)
T ss_pred CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCc-cCCCCceEEEECCCccccCCHHHHhhcceEEEecCchhcc
Confidence 4679999999998 99999999999999999999993 0069999999998654 122 2357999999544466
Q ss_pred cccccccchHHHHhccc-------c-------chHHHHHHHH-HhcCCc-cccCCCcC-Cch-HHHHHHHHH--------
Q 001709 783 ELTMEAARFKDEMWMGI-------R-------DLSRKTDLIV-LVHNLS-HKIPRYNY-SSA-SGQQQPALS-------- 836 (1022)
Q Consensus 783 ~lTV~~~~~~ENI~~g~-------~-------~~~~~v~~~L-~v~gL~-~~~~r~~~-~LS-GqrQRvaIA-------- 836 (1022)
.+|+ .+++.+.. . ...+++++++ .+ ++. +..++.+. +|| |||||++||
T Consensus 92 ~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~ 165 (248)
T PRK09580 92 GVSN-----QFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALL-KMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPE 165 (248)
T ss_pred chhH-----HHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHc-CCChhhcccCCCCCCCHHHHHHHHHHHHHHcCCC
Confidence 5565 44432110 0 0234566677 66 884 56677775 799 999999999
Q ss_pred -hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCCc
Q 001709 837 -LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCPY 890 (1022)
Q Consensus 837 -LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~~ 890 (1022)
|||||||++ +|...+..+...+. .+.....++++++|...
T Consensus 166 illLDEPt~~-------------LD~~~~~~l~~~l~-~l~~~~~tiii~sH~~~ 206 (248)
T PRK09580 166 LCILDESDSG-------------LDIDALKIVADGVN-SLRDGKRSFIIVTHYQR 206 (248)
T ss_pred EEEEeCCCcc-------------CCHHHHHHHHHHHH-HHHhCCCEEEEEeCCHH
Confidence 999999996 67777776666554 34444456666664433
No 301
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.90 E-value=2.5e-23 Score=209.68 Aligned_cols=136 Identities=22% Similarity=0.293 Sum_probs=105.6
Q ss_pred eeEEEEecCCCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc----hhhhcCceEE
Q 001709 701 SDVFIFCTSDFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD----QEGIAGGLCY 773 (1022)
Q Consensus 701 ~~~~~~~~~~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~----~~~lr~~IGy 773 (1022)
+++.+.+..+..++++++||+++ +++|+||||||||||+++|+|++ +|++|+|.+++.++ ....++.++|
T Consensus 4 ~~l~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (173)
T cd03246 4 ENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLL---RPTSGRVRLDGADISQWDPNELGDHVGY 80 (173)
T ss_pred EEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhcc---CCCCCeEEECCEEcccCCHHHHHhheEE
Confidence 34334333223469999999998 99999999999999999999999 99999999998654 3455778999
Q ss_pred EcCCCCCCccccccccchHHHHhccccchHHHHHHHHHhcCCccccCCCcCCch-HHHHHHHHH---------hhhcccc
Q 001709 774 CDSAGVNLQELTMEAARFKDEMWMGIRDLSRKTDLIVLVHNLSHKIPRYNYSSA-SGQQQPALS---------LLLNEAK 843 (1022)
Q Consensus 774 V~Q~~~~~~~lTV~~~~~~ENI~~g~~~~~~~v~~~L~v~gL~~~~~r~~~~LS-GqrQRvaIA---------LLLDEPT 843 (1022)
++|+...++ .|+ +||+ || |||||++|| |||||||
T Consensus 81 ~~q~~~~~~-~tv-----~~~l------------------------------LS~G~~qrv~la~al~~~p~~lllDEPt 124 (173)
T cd03246 81 LPQDDELFS-GSI-----AENI------------------------------LSGGQRQRLGLARALYGNPRILVLDEPN 124 (173)
T ss_pred ECCCCcccc-CcH-----HHHC------------------------------cCHHHHHHHHHHHHHhcCCCEEEEECCc
Confidence 999543365 599 8776 99 999999999 9999999
Q ss_pred CCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCC
Q 001709 844 SLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCP 889 (1022)
Q Consensus 844 Sad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~ 889 (1022)
++ +|...+..+...+.+. .....++++++|..
T Consensus 125 ~~-------------LD~~~~~~l~~~l~~~-~~~~~tii~~sh~~ 156 (173)
T cd03246 125 SH-------------LDVEGERALNQAIAAL-KAAGATRIVIAHRP 156 (173)
T ss_pred cc-------------cCHHHHHHHHHHHHHH-HhCCCEEEEEeCCH
Confidence 96 7777777777666443 44344566665433
No 302
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=3.6e-23 Score=221.63 Aligned_cols=162 Identities=11% Similarity=0.170 Sum_probs=121.0
Q ss_pred ccccCceeEEEEecCCCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCC-----CceEEEEccccc---
Q 001709 695 IRPEGLSDVFIFCTSDFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRT-----INSGNLDAEADD--- 763 (1022)
Q Consensus 695 i~~~~l~~~~~~~~~~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~P-----tsG~I~idg~~~--- 763 (1022)
|.+++++ +.+ +.+++|+||||+|+ +++|+|+||||||||+++|+|+. +| ++|+|.+++.+.
T Consensus 17 l~~~~l~---~~~--~~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~---~~~~~~~~sG~i~~~g~~~~~~ 88 (265)
T PRK14252 17 SEVNKLN---FYY--GGYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMH---DLYPGNHYEGEIILHPDNVNIL 88 (265)
T ss_pred EEEEEEE---EEE--CCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccc---CCCCCCCcccEEEEcCcccccc
Confidence 5544444 333 34579999999999 99999999999999999999998 75 799999987432
Q ss_pred -----hhhhcCceEEEcCCCCCCccccccccchHHHHhcccc--------chHHHHHHHH-HhcCC----ccccCCCcCC
Q 001709 764 -----QEGIAGGLCYCDSAGVNLQELTMEAARFKDEMWMGIR--------DLSRKTDLIV-LVHNL----SHKIPRYNYS 825 (1022)
Q Consensus 764 -----~~~lr~~IGyV~Q~~~~~~~lTV~~~~~~ENI~~g~~--------~~~~~v~~~L-~v~gL----~~~~~r~~~~ 825 (1022)
...+++.|+|++|+...|+ .|+ +||+.++.. ..++++..++ .+ ++ .+..++.+.+
T Consensus 89 ~~~~~~~~~~~~i~~~~q~~~~~~-~tv-----~eni~~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~l~~~~~~~~~~ 161 (265)
T PRK14252 89 SPEVDPIEVRMRISMVFQKPNPFP-KSI-----FENVAYGLRIRGVKRRSILEERVENALRNA-ALWDEVKDRLGDLAFN 161 (265)
T ss_pred ccccCHHHHhccEEEEccCCcCCc-chH-----HHHHHhHHHHcCCChHHHHHHHHHHHHHHc-CCchhhhHHHhCCccc
Confidence 2345778999999544466 599 999987532 1234566666 55 65 3567889999
Q ss_pred ch-HHHHHHHHH---------hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEe
Q 001709 826 SA-SGQQQPALS---------LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVIN 886 (1022)
Q Consensus 826 LS-GqrQRvaIA---------LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~ 886 (1022)
|| |||||++|| |||||||++ +|...+..+...+.+. .. ..++++++
T Consensus 162 LS~G~~qrv~laral~~~p~llllDEPt~g-------------LD~~~~~~l~~~l~~l-~~-~~tiiivt 217 (265)
T PRK14252 162 LSGGQQQRLCIARALATDPEILLFDEPTSA-------------LDPIATASIEELISDL-KN-KVTILIVT 217 (265)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCcc-------------CCHHHHHHHHHHHHHH-Hh-CCEEEEEe
Confidence 99 999999999 999999997 6766666666655443 33 34566664
No 303
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.90 E-value=1.1e-23 Score=212.05 Aligned_cols=165 Identities=16% Similarity=0.172 Sum_probs=129.8
Q ss_pred ccccCceeEEEEecCCCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc--------
Q 001709 695 IRPEGLSDVFIFCTSDFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD-------- 763 (1022)
Q Consensus 695 i~~~~l~~~~~~~~~~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~-------- 763 (1022)
|++++++ +|| +...+|-||+|+.+ .+.|+||||+|||||+|.|.=|. .|.+|+..|.+...
T Consensus 3 irv~~in---~~y--g~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle---~p~sg~l~ia~~~fd~s~~~~~ 74 (242)
T COG4161 3 IQLNGIN---CFY--GAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLE---MPRSGTLNIAGNHFDFSKTPSD 74 (242)
T ss_pred eEEcccc---ccc--ccchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHh---CCCCCeEEecccccccccCccH
Confidence 4555565 344 45679999999998 99999999999999999999999 99999999874221
Q ss_pred --hhhhcCceEEEcCCCCCCccccccccchHHHHhcccc------c--hHHHHHHHH-HhcCCccccCCCcCCch-HHHH
Q 001709 764 --QEGIAGGLCYCDSAGVNLQELTMEAARFKDEMWMGIR------D--LSRKTDLIV-LVHNLSHKIPRYNYSSA-SGQQ 831 (1022)
Q Consensus 764 --~~~lr~~IGyV~Q~~~~~~~lTV~~~~~~ENI~~g~~------~--~~~~v~~~L-~v~gL~~~~~r~~~~LS-GqrQ 831 (1022)
...+|+.+|||||...++|++|| .||+.-... . ...++.++| .+ .|.+++|++|-.|| ||||
T Consensus 75 k~i~~lr~~vgmvfqqy~lwphltv-----~enlieap~kv~gl~~~qa~~~a~ellkrl-rl~~~adr~plhlsggqqq 148 (242)
T COG4161 75 KAIRDLRRNVGMVFQQYNLWPHLTV-----QENLIEAPCRVLGLSKDQALARAEKLLKRL-RLKPYADRYPLHLSGGQQQ 148 (242)
T ss_pred HHHHHHHHhhhhhhhhhccCchhHH-----HHHHHhhhHHHhCCCHHHHHHHHHHHHHHh-ccccccccCceecccchhh
Confidence 34678999999995445999999 999854322 1 455677888 87 99999999999999 9999
Q ss_pred HHHHH---------hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEec
Q 001709 832 QPALS---------LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINS 887 (1022)
Q Consensus 832 RvaIA---------LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~ 887 (1022)
||||| ||+||||++.+|++ .... ..+.++++.+.-+-+||+|
T Consensus 149 rvaiaralmmkpqvllfdeptaaldpei-------------taqv-v~iikel~~tgitqvivth 199 (242)
T COG4161 149 RVAIARALMMEPQVLLFDEPTAALDPEI-------------TAQI-VSIIKELAETGITQVIVTH 199 (242)
T ss_pred hHHHHHHHhcCCcEEeecCcccccCHHH-------------HHHH-HHHHHHHHhcCceEEEEEe
Confidence 99999 99999999855542 2222 2334666788778888863
No 304
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.90 E-value=1.5e-23 Score=243.41 Aligned_cols=164 Identities=19% Similarity=0.219 Sum_probs=126.9
Q ss_pred EEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc-----hhhhcCceEEEcCCC---CCCc
Q 001709 714 VFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD-----QEGIAGGLCYCDSAG---VNLQ 782 (1022)
Q Consensus 714 aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~-----~~~lr~~IGyV~Q~~---~~~~ 782 (1022)
+|++|||+|+ +++|+||||||||||+|+|+|++ +|++|+|.++|.++ ...++++||||+|+. ..++
T Consensus 267 ~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~---~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~ 343 (501)
T PRK10762 267 GVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGAL---PRTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVL 343 (501)
T ss_pred CcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCC---CCCceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcC
Confidence 6999999999 99999999999999999999999 99999999998654 123467899999953 2367
Q ss_pred cccccccchHHHHhcccc-------------chHHHHHHHH-HhcCCc-cccCCCcCCch-HHHHHHHHH---------h
Q 001709 783 ELTMEAARFKDEMWMGIR-------------DLSRKTDLIV-LVHNLS-HKIPRYNYSSA-SGQQQPALS---------L 837 (1022)
Q Consensus 783 ~lTV~~~~~~ENI~~g~~-------------~~~~~v~~~L-~v~gL~-~~~~r~~~~LS-GqrQRvaIA---------L 837 (1022)
.+|+ .||+.++.. ...+++++++ .+ ||. +..++++.+|| |||||++|| |
T Consensus 344 ~~tv-----~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~~LSgGekqrv~lA~al~~~p~ll 417 (501)
T PRK10762 344 GMSV-----KENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLF-NIKTPSMEQAIGLLSGGNQQKVAIARGLMTRPKVL 417 (501)
T ss_pred CCcH-----HHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhc-CCCCCCccCchhhCCHHHHHHHHHHHHHhhCCCEE
Confidence 7999 999976421 1234577888 77 995 68899999999 999999999 9
Q ss_pred hhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCCcccccCcccccccCCCC
Q 001709 838 LLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCPYVMPGAVSASLSWGASG 906 (1022)
Q Consensus 838 LLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~~V~~~~~~a~~l~~~~~ 906 (1022)
||||||++ +|...+..+...+.+ +.....++++++ |+.+.+..+++++.
T Consensus 418 lLDEPt~~-------------LD~~~~~~l~~~l~~-~~~~g~tviivt------Hd~~~~~~~~d~v~ 466 (501)
T PRK10762 418 ILDEPTRG-------------VDVGAKKEIYQLINQ-FKAEGLSIILVS------SEMPEVLGMSDRIL 466 (501)
T ss_pred EEcCCCCC-------------CCHhHHHHHHHHHHH-HHHCCCEEEEEc------CCHHHHHhhCCEEE
Confidence 99999997 777777777766654 444444555555 44444444444443
No 305
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.90 E-value=1.5e-23 Score=243.51 Aligned_cols=165 Identities=16% Similarity=0.234 Sum_probs=128.3
Q ss_pred eEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc-----hhhhcCceEEEcCCCC---CC
Q 001709 713 TVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD-----QEGIAGGLCYCDSAGV---NL 781 (1022)
Q Consensus 713 ~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~-----~~~lr~~IGyV~Q~~~---~~ 781 (1022)
.+++||||+|+ +++|+||||||||||+|+|+|++ +|++|+|.+++.++ ....+++|+|++|+.. .+
T Consensus 267 ~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~---~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 343 (501)
T PRK11288 267 GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGAT---RRTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGII 343 (501)
T ss_pred CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCC---cCCCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCc
Confidence 48999999999 99999999999999999999999 99999999998654 1234678999999532 47
Q ss_pred ccccccccchHHHHhcccc-----------c--hHHHHHHHH-HhcCCc-cccCCCcCCch-HHHHHHHHH---------
Q 001709 782 QELTMEAARFKDEMWMGIR-----------D--LSRKTDLIV-LVHNLS-HKIPRYNYSSA-SGQQQPALS--------- 836 (1022)
Q Consensus 782 ~~lTV~~~~~~ENI~~g~~-----------~--~~~~v~~~L-~v~gL~-~~~~r~~~~LS-GqrQRvaIA--------- 836 (1022)
+.+|+ .||+.++.. . .++.+++++ .+ +|. +..++++.+|| |||||++||
T Consensus 344 ~~~tv-----~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~~LSgGq~qrl~la~al~~~p~l 417 (501)
T PRK11288 344 PVHSV-----ADNINISARRHHLRAGCLINNRWEAENADRFIRSL-NIKTPSREQLIMNLSGGNQQKAILGRWLSEDMKV 417 (501)
T ss_pred CCCCH-----HHHhccccchhhcccccccChHHHHHHHHHHHHhc-CcccCCccCccccCCHHHHHHHHHHHHHccCCCE
Confidence 77999 999876421 1 124577788 77 994 68899999999 999999999
Q ss_pred hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCCcccccCcccccccCCCC
Q 001709 837 LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCPYVMPGAVSASLSWGASG 906 (1022)
Q Consensus 837 LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~~V~~~~~~a~~l~~~~~ 906 (1022)
|||||||++ +|...+..+...+.+ +.....++++++ |+.+.+..+++++.
T Consensus 418 llLDEPt~~-------------LD~~~~~~l~~~l~~-l~~~g~tviivs------Hd~~~~~~~~d~i~ 467 (501)
T PRK11288 418 ILLDEPTRG-------------IDVGAKHEIYNVIYE-LAAQGVAVLFVS------SDLPEVLGVADRIV 467 (501)
T ss_pred EEEcCCCCC-------------CCHhHHHHHHHHHHH-HHhCCCEEEEEC------CCHHHHHhhCCEEE
Confidence 999999996 777777777766644 344445666665 45444444445443
No 306
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=9.9e-24 Score=241.83 Aligned_cols=179 Identities=15% Similarity=0.150 Sum_probs=140.9
Q ss_pred ceeEEEEecCCCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc----hhhhcCceE
Q 001709 700 LSDVFIFCTSDFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD----QEGIAGGLC 772 (1022)
Q Consensus 700 l~~~~~~~~~~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~----~~~lr~~IG 772 (1022)
+++++|.|.....++|+|+||+++ .|||+|+||||||||+.+|+|.+ +|++|+|.++|.++ ...++..|+
T Consensus 339 ~~~vsF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~---~~~~G~i~~~g~~~~~l~~~~~~e~i~ 415 (573)
T COG4987 339 LRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAW---DPQQGSITLNGVEIASLDEQALRETIS 415 (573)
T ss_pred eccceeecCCCccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhcc---CCCCCeeeECCcChhhCChhhHHHHHh
Confidence 555556666566689999999999 99999999999999999999999 99999999998775 344788999
Q ss_pred EEcCCCCCCccccccccchHHHHhccccc-hHHHHHHHH-HhcCCcc-----------ccCCCcCCch-HHHHHHHHH--
Q 001709 773 YCDSAGVNLQELTMEAARFKDEMWMGIRD-LSRKTDLIV-LVHNLSH-----------KIPRYNYSSA-SGQQQPALS-- 836 (1022)
Q Consensus 773 yV~Q~~~~~~~lTV~~~~~~ENI~~g~~~-~~~~v~~~L-~v~gL~~-----------~~~r~~~~LS-GqrQRvaIA-- 836 (1022)
++.| .+.++..|+ +||+.++..+ .++.+.+++ .+ ||++ ..++.+..|| |||||++||
T Consensus 416 vl~Q-r~hlF~~Tl-----r~NL~lA~~~AsDEel~~aL~qv-gL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~ 488 (573)
T COG4987 416 VLTQ-RVHLFSGTL-----RDNLRLANPDASDEELWAALQQV-GLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARA 488 (573)
T ss_pred hhcc-chHHHHHHH-----HHHHhhcCCCCCHHHHHHHHHHc-CHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHH
Confidence 9999 566666899 9999998875 455666666 66 6655 4456677999 999999999
Q ss_pred -------hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCCcccccCcccccccC
Q 001709 837 -------LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCPYVMPGAVSASLSWG 903 (1022)
Q Consensus 837 -------LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~~V~~~~~~a~~l~~ 903 (1022)
+||||||.+ +|+.+...++..+.+..+ ++++++|+|--.=.+.+|..+++.+
T Consensus 489 LL~dapl~lLDEPTeg-------------LD~~TE~~vL~ll~~~~~--~kTll~vTHrL~~le~~drIivl~~ 547 (573)
T COG4987 489 LLHDAPLWLLDEPTEG-------------LDPITERQVLALLFEHAE--GKTLLMVTHRLRGLERMDRIIVLDN 547 (573)
T ss_pred HHcCCCeEEecCCccc-------------CChhhHHHHHHHHHHHhc--CCeEEEEecccccHhhcCEEEEEEC
Confidence 999999996 677776666665554433 5678888766555666665555544
No 307
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.90 E-value=3.5e-23 Score=210.24 Aligned_cols=128 Identities=20% Similarity=0.278 Sum_probs=102.9
Q ss_pred EEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc-h----hhhcCceEEEcCCC---CCCc
Q 001709 714 VFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD-Q----EGIAGGLCYCDSAG---VNLQ 782 (1022)
Q Consensus 714 aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~-~----~~lr~~IGyV~Q~~---~~~~ 782 (1022)
+|++|||+++ +++|+||||||||||+|+|+|++ +|++|+|++++.++ . ...++.++|++|+. ..++
T Consensus 15 ~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~---~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 91 (182)
T cd03215 15 AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLR---PPASGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVL 91 (182)
T ss_pred eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC---CCCCceEEECCEECCccCHHHHHhCCeEEecCCcccCcccC
Confidence 8999999999 99999999999999999999999 99999999998664 1 23467899999953 2367
Q ss_pred cccccccchHHHHhccccchHHHHHHHHHhcCCccccCCCcCCch-HHHHHHHHH---------hhhccccCCChhHHHH
Q 001709 783 ELTMEAARFKDEMWMGIRDLSRKTDLIVLVHNLSHKIPRYNYSSA-SGQQQPALS---------LLLNEAKSLGIPWVLA 852 (1022)
Q Consensus 783 ~lTV~~~~~~ENI~~g~~~~~~~v~~~L~v~gL~~~~~r~~~~LS-GqrQRvaIA---------LLLDEPTSad~~~v~~ 852 (1022)
.+|+ +||+.++.. || |||||++|| |||||||++
T Consensus 92 ~~t~-----~e~l~~~~~-------------------------LS~G~~qrl~la~al~~~p~llllDEP~~~------- 134 (182)
T cd03215 92 DLSV-----AENIALSSL-------------------------LSGGNQQKVVLARWLARDPRVLILDEPTRG------- 134 (182)
T ss_pred CCcH-----HHHHHHHhh-------------------------cCHHHHHHHHHHHHHccCCCEEEECCCCcC-------
Confidence 7899 999865320 99 999999999 999999997
Q ss_pred HhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecC
Q 001709 853 ITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSC 888 (1022)
Q Consensus 853 I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~ 888 (1022)
+|...+..+...+.+ +.....++++++|.
T Consensus 135 ------LD~~~~~~l~~~l~~-~~~~~~tiii~sh~ 163 (182)
T cd03215 135 ------VDVGAKAEIYRLIRE-LADAGKAVLLISSE 163 (182)
T ss_pred ------CCHHHHHHHHHHHHH-HHHCCCEEEEEeCC
Confidence 777777777766644 33334455555533
No 308
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=4.2e-23 Score=218.61 Aligned_cols=155 Identities=14% Similarity=0.197 Sum_probs=117.3
Q ss_pred CeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCC--CCceEEEEccccc------hhhhcCceEEEcCCCC
Q 001709 711 FTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVR--TINSGNLDAEADD------QEGIAGGLCYCDSAGV 779 (1022)
Q Consensus 711 ~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~--PtsG~I~idg~~~------~~~lr~~IGyV~Q~~~ 779 (1022)
.+++|+|+||+|. +++|+||||||||||+++|+|+....+ |++|+|.++|.++ ...++++++|+||+..
T Consensus 15 ~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~ 94 (250)
T PRK14266 15 DAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVELRKKVGMVFQKPN 94 (250)
T ss_pred CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHHHhhheEEEecCCc
Confidence 4679999999998 999999999999999999999861011 4899999998654 1245778999999544
Q ss_pred CCccccccccchHHHHhcccc-----c---hHHHHHHHH-HhcCCc----cccCCCcCCch-HHHHHHHHH---------
Q 001709 780 NLQELTMEAARFKDEMWMGIR-----D---LSRKTDLIV-LVHNLS----HKIPRYNYSSA-SGQQQPALS--------- 836 (1022)
Q Consensus 780 ~~~~lTV~~~~~~ENI~~g~~-----~---~~~~v~~~L-~v~gL~----~~~~r~~~~LS-GqrQRvaIA--------- 836 (1022)
.|+ .|+ .||+.++.. . ..+++.+++ .+ |+. +..++++.+|| |||||++||
T Consensus 95 ~~~-~t~-----~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~l 167 (250)
T PRK14266 95 PFP-KSI-----FDNVAYGLRIHGEDDEDFIEERVEESLKAA-ALWDEVKDKLDKSALGLSGGQQQRLCIARTIAVSPEV 167 (250)
T ss_pred cCc-chH-----HHHHHhHHhhcCCCCHHHHHHHHHHHHHHc-CCchhHHHHHhCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 466 599 999987532 1 234566677 66 763 45688999999 999999999
Q ss_pred hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEec
Q 001709 837 LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINS 887 (1022)
Q Consensus 837 LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~ 887 (1022)
|||||||++ +|...+..+...+.+ +.. ..++++++|
T Consensus 168 lllDEP~~g-------------LD~~~~~~l~~~l~~-~~~-~~tiii~sh 203 (250)
T PRK14266 168 ILMDEPCSA-------------LDPISTTKIEDLIHK-LKE-DYTIVIVTH 203 (250)
T ss_pred EEEcCCCcc-------------CCHHHHHHHHHHHHH-Hhc-CCeEEEEEC
Confidence 999999997 777777766655543 333 346666653
No 309
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.89 E-value=5.5e-23 Score=210.71 Aligned_cols=148 Identities=16% Similarity=0.209 Sum_probs=111.4
Q ss_pred eeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccchhhhcCceEEEcCCCCCCccccccc
Q 001709 712 TTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADDQEGIAGGLCYCDSAGVNLQELTMEA 788 (1022)
Q Consensus 712 ~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~~~~lr~~IGyV~Q~~~~~~~lTV~~ 788 (1022)
+++|++|||+++ +++|+||||||||||+|+|+|++ ..+|++|+|.+++.++...+++.++|++|++..++.+|+
T Consensus 20 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~-~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv-- 96 (192)
T cd03232 20 RQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRK-TAGVITGEILINGRPLDKNFQRSTGYVEQQDVHSPNLTV-- 96 (192)
T ss_pred eEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCC-cCCCcceEEEECCEehHHHhhhceEEecccCccccCCcH--
Confidence 579999999999 99999999999999999999986 013899999999876533456789999995444777899
Q ss_pred cchHHHHhccccchHHHHHHHHHhcCCccccCCCcCCch-HHHHHHHHH---------hhhccccCCChhHHHHHhhhhc
Q 001709 789 ARFKDEMWMGIRDLSRKTDLIVLVHNLSHKIPRYNYSSA-SGQQQPALS---------LLLNEAKSLGIPWVLAITNKFS 858 (1022)
Q Consensus 789 ~~~~ENI~~g~~~~~~~v~~~L~v~gL~~~~~r~~~~LS-GqrQRvaIA---------LLLDEPTSad~~~v~~I~~~~~ 858 (1022)
+||+.++. .. . +|| |||||++|| |||||||++
T Consensus 97 ---~~~l~~~~-----------~~-~----------~LSgGe~qrv~la~al~~~p~vlllDEP~~~------------- 138 (192)
T cd03232 97 ---REALRFSA-----------LL-R----------GLSVEQRKRLTIGVELAAKPSILFLDEPTSG------------- 138 (192)
T ss_pred ---HHHHHHHH-----------HH-h----------cCCHHHhHHHHHHHHHhcCCcEEEEeCCCcC-------------
Confidence 99997532 01 1 999 999999999 999999997
Q ss_pred ccHHHHHHHHHHHHHHHHhCCCeEEEEecCCc--ccccCcccccc
Q 001709 859 VSAHQQRAAIDAVMQAYQASPSTTEVINSCPY--VMPGAVSASLS 901 (1022)
Q Consensus 859 ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~~--V~~~~~~a~~l 901 (1022)
+|...+..+...+. .+.....++++++|... +...++..+.+
T Consensus 139 LD~~~~~~l~~~l~-~~~~~~~tiiivtH~~~~~~~~~~d~i~~l 182 (192)
T cd03232 139 LDSQAAYNIVRFLK-KLADSGQAILCTIHQPSASIFEKFDRLLLL 182 (192)
T ss_pred CCHHHHHHHHHHHH-HHHHcCCEEEEEEcCChHHHHhhCCEEEEE
Confidence 67777776666554 44444446666654432 33444544444
No 310
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.89 E-value=2.4e-23 Score=268.75 Aligned_cols=179 Identities=13% Similarity=0.127 Sum_probs=134.2
Q ss_pred ceeEEEEecCCCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc----hhhhcCceE
Q 001709 700 LSDVFIFCTSDFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD----QEGIAGGLC 772 (1022)
Q Consensus 700 l~~~~~~~~~~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~----~~~lr~~IG 772 (1022)
++++++.|..+..++|+||||+|+ .+||+|+||||||||+++|.|++ +|++|+|.+||.++ ...+|++|+
T Consensus 1287 f~nVsf~Y~~~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~---~~~~G~I~IdG~dI~~i~~~~LR~~i~ 1363 (1522)
T TIGR00957 1287 FRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRIN---ESAEGEIIIDGLNIAKIGLHDLRFKIT 1363 (1522)
T ss_pred EEEEEEEeCCCCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCc---cCCCCeEEECCEEccccCHHHHHhcCe
Confidence 667777776554579999999999 99999999999999999999999 99999999998765 678899999
Q ss_pred EEcCCCCCCccccccccchHHHHh-ccccchHHHHHHHH-Hh----------cCCccccCCCcCCch-HHHHHHHHH---
Q 001709 773 YCDSAGVNLQELTMEAARFKDEMW-MGIRDLSRKTDLIV-LV----------HNLSHKIPRYNYSSA-SGQQQPALS--- 836 (1022)
Q Consensus 773 yV~Q~~~~~~~lTV~~~~~~ENI~-~g~~~~~~~v~~~L-~v----------~gL~~~~~r~~~~LS-GqrQRvaIA--- 836 (1022)
|||| ++.++..|+ +|||. ++ ...++.+.+++ .+ .||+...++....|| |||||++||
T Consensus 1364 iVpQ-dp~LF~gTI-----r~NLdp~~-~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARAL 1436 (1522)
T TIGR00957 1364 IIPQ-DPVLFSGSL-----RMNLDPFS-QYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARAL 1436 (1522)
T ss_pred EECC-CCcccCccH-----HHHcCccc-CCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHH
Confidence 9999 555445799 99998 44 22333344444 33 355556667778899 999999999
Q ss_pred ------hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCCcccccCcccccccC
Q 001709 837 ------LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCPYVMPGAVSASLSWG 903 (1022)
Q Consensus 837 ------LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~~V~~~~~~a~~l~~ 903 (1022)
||||||||+ +|..+...+...+.+.. ...|+++|.|-...+..+|..+.+.+
T Consensus 1437 Lr~~~ILiLDEaTSa-------------lD~~Te~~Iq~~l~~~~--~~~TvI~IAHRl~ti~~~DrIlVld~ 1494 (1522)
T TIGR00957 1437 LRKTKILVLDEATAA-------------VDLETDNLIQSTIRTQF--EDCTVLTIAHRLNTIMDYTRVIVLDK 1494 (1522)
T ss_pred HcCCCEEEEECCccc-------------CCHHHHHHHHHHHHHHc--CCCEEEEEecCHHHHHhCCEEEEEEC
Confidence 999999997 77776665555543322 23466666544444445555555543
No 311
>PLN03211 ABC transporter G-25; Provisional
Probab=99.89 E-value=3.5e-23 Score=248.35 Aligned_cols=171 Identities=14% Similarity=0.124 Sum_probs=133.1
Q ss_pred CCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCC--ceEEEEccccchhhhcCceEEEcCCCCCCccc
Q 001709 710 DFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTI--NSGNLDAEADDQEGIAGGLCYCDSAGVNLQEL 784 (1022)
Q Consensus 710 ~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~Pt--sG~I~idg~~~~~~lr~~IGyV~Q~~~~~~~l 784 (1022)
+++++|+|||++++ +++|+||||||||||||+|+|+. +|+ +|+|.+||.+.....++++|||+|++..++.+
T Consensus 79 ~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~---~~~~~sG~I~inG~~~~~~~~~~i~yv~Q~~~l~~~l 155 (659)
T PLN03211 79 QERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRI---QGNNFTGTILANNRKPTKQILKRTGFVTQDDILYPHL 155 (659)
T ss_pred CCCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCC---CCCceeEEEEECCEECchhhccceEEECcccccCCcC
Confidence 45689999999999 99999999999999999999999 885 89999999776234456799999965558889
Q ss_pred cccccchHHHHhcccc-----c-----hHHHHHHHH-HhcCCcccc-----CCCcCCch-HHHHHHHHH---------hh
Q 001709 785 TMEAARFKDEMWMGIR-----D-----LSRKTDLIV-LVHNLSHKI-----PRYNYSSA-SGQQQPALS---------LL 838 (1022)
Q Consensus 785 TV~~~~~~ENI~~g~~-----~-----~~~~v~~~L-~v~gL~~~~-----~r~~~~LS-GqrQRvaIA---------LL 838 (1022)
|| +||+.|... . ..+++++++ .+ ||.+.. ++.+..|| |||||++|| ||
T Consensus 156 TV-----~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~l-gL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLl 229 (659)
T PLN03211 156 TV-----RETLVFCSLLRLPKSLTKQEKILVAESVISEL-GLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLI 229 (659)
T ss_pred CH-----HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHc-CChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEE
Confidence 99 999987531 1 234577888 77 998765 45677899 999999999 99
Q ss_pred hccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCCc--ccccCcccccccC
Q 001709 839 LNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCPY--VMPGAVSASLSWG 903 (1022)
Q Consensus 839 LDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~~--V~~~~~~a~~l~~ 903 (1022)
|||||++ +|...+..++..+.+ +.....+++++.|-+. +...+|..+.+.+
T Consensus 230 LDEPtsg-------------LD~~~~~~l~~~L~~-l~~~g~TvI~~sH~~~~~i~~~~D~iilL~~ 282 (659)
T PLN03211 230 LDEPTSG-------------LDATAAYRLVLTLGS-LAQKGKTIVTSMHQPSSRVYQMFDSVLVLSE 282 (659)
T ss_pred EeCCCCC-------------cCHHHHHHHHHHHHH-HHhCCCEEEEEecCCCHHHHHhhceEEEecC
Confidence 9999997 777777777776644 4444445555555543 5566677776654
No 312
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.89 E-value=3.1e-23 Score=269.10 Aligned_cols=167 Identities=17% Similarity=0.264 Sum_probs=131.7
Q ss_pred cccccCceeEEEEecCCCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc---hhhh
Q 001709 694 FIRPEGLSDVFIFCTSDFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD---QEGI 767 (1022)
Q Consensus 694 ~i~~~~l~~~~~~~~~~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~---~~~l 767 (1022)
.+.++++++. |....+.||+||||+|+ ++||+||||||||||+|+|+|++ +|++|+|.++|.++ ....
T Consensus 1937 ~L~v~nLsK~---Y~~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll---~ptsG~I~i~G~~i~~~~~~~ 2010 (2272)
T TIGR01257 1937 ILRLNELTKV---YSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDT---TVTSGDATVAGKSILTNISDV 2010 (2272)
T ss_pred eEEEEEEEEE---ECCCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCC---CCCccEEEECCEECcchHHHH
Confidence 4666666653 22223679999999998 99999999999999999999999 99999999998765 2345
Q ss_pred cCceEEEcCCCCCCccccccccchHHHHhcccc-----c--hHHHHHHHH-HhcCCccccCCCcCCch-HHHHHHHHH--
Q 001709 768 AGGLCYCDSAGVNLQELTMEAARFKDEMWMGIR-----D--LSRKTDLIV-LVHNLSHKIPRYNYSSA-SGQQQPALS-- 836 (1022)
Q Consensus 768 r~~IGyV~Q~~~~~~~lTV~~~~~~ENI~~g~~-----~--~~~~v~~~L-~v~gL~~~~~r~~~~LS-GqrQRvaIA-- 836 (1022)
++.|||++|.+..++.+|+ +||+.+... . .++++++++ .+ ||.+..++++.+|| |||||++||
T Consensus 2011 r~~IGy~pQ~~~L~~~LTv-----~E~L~l~a~l~g~~~~~~~~~v~~lLe~l-gL~~~~dk~~~~LSGGqKqRLslA~A 2084 (2272)
T TIGR01257 2011 HQNMGYCPQFDAIDDLLTG-----REHLYLYARLRGVPAEEIEKVANWSIQSL-GLSLYADRLAGTYSGGNKRKLSTAIA 2084 (2272)
T ss_pred hhhEEEEeccccCCCCCCH-----HHHHHHHHHhcCCCHHHHHHHHHHHHHHc-CCHHHhcCChhhCCHHHHHHHHHHHH
Confidence 7789999996566888999 999986422 1 245677788 77 99999999999999 999999999
Q ss_pred -------hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEe
Q 001709 837 -------LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVIN 886 (1022)
Q Consensus 837 -------LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~ 886 (1022)
|||||||++ +|+..++.+...+.+. .....++++++
T Consensus 2085 Li~~P~VLLLDEPTsG-------------LDp~sr~~l~~lL~~l-~~~g~TIILtT 2127 (2272)
T TIGR01257 2085 LIGCPPLVLLDEPTTG-------------MDPQARRMLWNTIVSI-IREGRAVVLTS 2127 (2272)
T ss_pred HhcCCCEEEEECCCCC-------------CCHHHHHHHHHHHHHH-HhCCCEEEEEe
Confidence 999999997 7777777777666544 33333444443
No 313
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.89 E-value=9.1e-23 Score=205.08 Aligned_cols=132 Identities=19% Similarity=0.216 Sum_probs=103.8
Q ss_pred CeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccchhhhcCceEEEcCCCCCCcccccc
Q 001709 711 FTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADDQEGIAGGLCYCDSAGVNLQELTME 787 (1022)
Q Consensus 711 ~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~~~~lr~~IGyV~Q~~~~~~~lTV~ 787 (1022)
.+++|+++||+++ +++|+||||||||||+++|+|++ +|++|+|.+++. +.++|++| +..++.+|+
T Consensus 13 ~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~---~~~~G~i~~~~~-------~~i~~~~q-~~~~~~~tv- 80 (166)
T cd03223 13 GRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLW---PWGSGRIGMPEG-------EDLLFLPQ-RPYLPLGTL- 80 (166)
T ss_pred CCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCC---CCCCceEEECCC-------ceEEEECC-CCccccccH-
Confidence 3579999999998 99999999999999999999999 999999998762 67999999 444556899
Q ss_pred ccchHHHHhccccchHHHHHHHHHhcCCccccCCCcCCch-HHHHHHHHH---------hhhccccCCChhHHHHHhhhh
Q 001709 788 AARFKDEMWMGIRDLSRKTDLIVLVHNLSHKIPRYNYSSA-SGQQQPALS---------LLLNEAKSLGIPWVLAITNKF 857 (1022)
Q Consensus 788 ~~~~~ENI~~g~~~~~~~v~~~L~v~gL~~~~~r~~~~LS-GqrQRvaIA---------LLLDEPTSad~~~v~~I~~~~ 857 (1022)
+||+.++ .+.+|| |||||++|| |||||||++
T Consensus 81 ----~~nl~~~-----------------------~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~------------ 121 (166)
T cd03223 81 ----REQLIYP-----------------------WDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSA------------ 121 (166)
T ss_pred ----HHHhhcc-----------------------CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCccc------------
Confidence 9998653 468999 999999999 999999997
Q ss_pred cccHHHHHHHHHHHHHHHHhCCCeEEEEecCCcccccCccc
Q 001709 858 SVSAHQQRAAIDAVMQAYQASPSTTEVINSCPYVMPGAVSA 898 (1022)
Q Consensus 858 ~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~~V~~~~~~a 898 (1022)
+|...+..+...+.+ + ..++++++|.......++..
T Consensus 122 -LD~~~~~~l~~~l~~-~---~~tiiivsh~~~~~~~~d~i 157 (166)
T cd03223 122 -LDEESEDRLYQLLKE-L---GITVISVGHRPSLWKFHDRV 157 (166)
T ss_pred -cCHHHHHHHHHHHHH-h---CCEEEEEeCChhHHhhCCEE
Confidence 666666665554433 2 34666666554444333333
No 314
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=3.9e-23 Score=241.49 Aligned_cols=145 Identities=19% Similarity=0.206 Sum_probs=115.2
Q ss_pred CCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccchhhhcCceEEEcCCCCCCccccc
Q 001709 710 DFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADDQEGIAGGLCYCDSAGVNLQELTM 786 (1022)
Q Consensus 710 ~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~~~~lr~~IGyV~Q~~~~~~~lTV 786 (1022)
+++++|+||||+|+ +++|+||||||||||||+|+|++ +|++|+|.+++. ..|||++|+...++.+|+
T Consensus 12 ~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~---~p~~G~i~~~~~-------~~i~~~~q~~~~~~~~tv 81 (530)
T PRK15064 12 GAKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDL---EPSAGNVSLDPN-------ERLGKLRQDQFAFEEFTV 81 (530)
T ss_pred CCcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCC---CCCCceEEecCC-------CEEEEEeccCCcCCCCcH
Confidence 34679999999999 99999999999999999999999 999999999862 459999995444788999
Q ss_pred cccchHHHHhcccc---------------------------------------chHHHHHHHH-HhcCCccc-cCCCcCC
Q 001709 787 EAARFKDEMWMGIR---------------------------------------DLSRKTDLIV-LVHNLSHK-IPRYNYS 825 (1022)
Q Consensus 787 ~~~~~~ENI~~g~~---------------------------------------~~~~~v~~~L-~v~gL~~~-~~r~~~~ 825 (1022)
+||+.++.. ..++++.+++ .+ ||.+. .++++.+
T Consensus 82 -----~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-gl~~~~~~~~~~~ 155 (530)
T PRK15064 82 -----LDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGV-GIPEEQHYGLMSE 155 (530)
T ss_pred -----HHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhC-CCChhHhcCchhh
Confidence 999876421 0124567778 77 99764 4578999
Q ss_pred ch-HHHHHHHHH---------hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEec
Q 001709 826 SA-SGQQQPALS---------LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINS 887 (1022)
Q Consensus 826 LS-GqrQRvaIA---------LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~ 887 (1022)
|| |||||++|| |||||||++ +|...+..+...+. ....++++++|
T Consensus 156 LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~-------------LD~~~~~~l~~~l~----~~~~tiiivsH 210 (530)
T PRK15064 156 VAPGWKLRVLLAQALFSNPDILLLDEPTNN-------------LDINTIRWLEDVLN----ERNSTMIIISH 210 (530)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEcCCCcc-------------cCHHHHHHHHHHHH----hCCCeEEEEeC
Confidence 99 999999999 999999996 67666666655542 23446666653
No 315
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.89 E-value=3.9e-23 Score=216.72 Aligned_cols=146 Identities=20% Similarity=0.207 Sum_probs=113.4
Q ss_pred CCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccchhhhcCceEEEcCCCCCCccccc
Q 001709 710 DFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADDQEGIAGGLCYCDSAGVNLQELTM 786 (1022)
Q Consensus 710 ~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~~~~lr~~IGyV~Q~~~~~~~lTV 786 (1022)
+.+++|+|+||+|+ +++|+||||||||||+++|+|++ +|++|+|.+++.+. .. ..+....++.+||
T Consensus 33 ~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~---~p~~G~i~~~g~~~-~~-------~~~~~~~~~~~tv 101 (224)
T cd03220 33 GEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIY---PPDSGTVTVRGRVS-SL-------LGLGGGFNPELTG 101 (224)
T ss_pred CCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC---CCCceEEEECCEEc-hh-------hcccccCCCCCcH
Confidence 56789999999998 99999999999999999999999 99999999998653 10 1110112456899
Q ss_pred cccchHHHHhcccc----c---hHHHHHHHH-HhcCCccccCCCcCCch-HHHHHHHHH---------hhhccccCCChh
Q 001709 787 EAARFKDEMWMGIR----D---LSRKTDLIV-LVHNLSHKIPRYNYSSA-SGQQQPALS---------LLLNEAKSLGIP 848 (1022)
Q Consensus 787 ~~~~~~ENI~~g~~----~---~~~~v~~~L-~v~gL~~~~~r~~~~LS-GqrQRvaIA---------LLLDEPTSad~~ 848 (1022)
.||+.++.. . ..+++.+++ .+ +|.+..++.+.+|| |||||++|| |||||||++
T Consensus 102 -----~enl~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~g--- 172 (224)
T cd03220 102 -----RENIYLNGRLLGLSRKEIDEKIDEIIEFS-ELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAV--- 172 (224)
T ss_pred -----HHHHHHHHHHcCCCHHHHHHHHHHHHHHc-CChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCccc---
Confidence 999986532 1 234566777 66 99999999999999 999999999 999999996
Q ss_pred HHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEe
Q 001709 849 WVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVIN 886 (1022)
Q Consensus 849 ~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~ 886 (1022)
+|...+..+...+.+. .....++++++
T Consensus 173 ----------LD~~~~~~~~~~l~~~-~~~~~tiii~s 199 (224)
T cd03220 173 ----------GDAAFQEKCQRRLREL-LKQGKTVILVS 199 (224)
T ss_pred ----------CCHHHHHHHHHHHHHH-HhCCCEEEEEe
Confidence 7777777777666443 33334555555
No 316
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.89 E-value=2.7e-23 Score=220.62 Aligned_cols=181 Identities=13% Similarity=0.122 Sum_probs=139.8
Q ss_pred ceeEEEEecCCCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc-----hhhhcCce
Q 001709 700 LSDVFIFCTSDFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD-----QEGIAGGL 771 (1022)
Q Consensus 700 l~~~~~~~~~~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~-----~~~lr~~I 771 (1022)
++++++.| +++++|+|||++|+ .++|+|||||||||||++|+|.+ +|++|.+.+.|... ..++|++|
T Consensus 34 l~~v~v~r--~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~---~pssg~~~~~G~~~G~~~~~~elrk~I 108 (257)
T COG1119 34 LKNVSVRR--NGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEH---PPSSGDVTLLGRRFGKGETIFELRKRI 108 (257)
T ss_pred ecceEEEE--CCEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhccc---CCCCCceeeeeeeccCCcchHHHHHHh
Confidence 56655655 57899999999999 99999999999999999999999 99999999986543 37889999
Q ss_pred EEEcCCCCC-C-ccccccccchHHHHhccccc------------hHHHHHHHH-HhcCCccccCCCcCCch-HHHHHHHH
Q 001709 772 CYCDSAGVN-L-QELTMEAARFKDEMWMGIRD------------LSRKTDLIV-LVHNLSHKIPRYNYSSA-SGQQQPAL 835 (1022)
Q Consensus 772 GyV~Q~~~~-~-~~lTV~~~~~~ENI~~g~~~------------~~~~v~~~L-~v~gL~~~~~r~~~~LS-GqrQRvaI 835 (1022)
|||...-.. | ...+| +|-|.-|... ..+++..++ .+ |+.+.++++..+|| ||||||.|
T Consensus 109 G~vS~~L~~~~~~~~~v-----~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~-g~~~la~r~~~~LS~Ge~rrvLi 182 (257)
T COG1119 109 GLVSSELHERFRVRETV-----RDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELL-GAKHLADRPFGSLSQGEQRRVLI 182 (257)
T ss_pred CccCHHHHhhccccccc-----ceeeeecccccccccccCCCHHHHHHHHHHHHHc-chhhhccCchhhcCHhHHHHHHH
Confidence 999873222 3 34556 6666544321 345667777 66 99999999999999 99999999
Q ss_pred H---------hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCC-eEEEE-ecCCcccccCcccccccCC
Q 001709 836 S---------LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPS-TTEVI-NSCPYVMPGAVSASLSWGA 904 (1022)
Q Consensus 836 A---------LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~-~~vVv-~~~~~V~~~~~~a~~l~~~ 904 (1022)
| |||||||++ +|...|..+...+-+....... +.++| |+.+.+...+++.+.+.+-
T Consensus 183 aRALv~~P~LLiLDEP~~G-------------LDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~lll~~g 249 (257)
T COG1119 183 ARALVKDPELLILDEPAQG-------------LDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEG 249 (257)
T ss_pred HHHHhcCCCEEEecCcccc-------------CChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccceEEEeeCC
Confidence 9 999999996 7777777777666444443222 23333 8888888888888877653
No 317
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.89 E-value=6.1e-23 Score=237.44 Aligned_cols=166 Identities=12% Similarity=0.088 Sum_probs=123.5
Q ss_pred cccccCceeEEEEecCCCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCC-CceEEEEccccc-----h
Q 001709 694 FIRPEGLSDVFIFCTSDFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRT-INSGNLDAEADD-----Q 764 (1022)
Q Consensus 694 ~i~~~~l~~~~~~~~~~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~P-tsG~I~idg~~~-----~ 764 (1022)
.+++++++. .+ +...+|+||||+|+ +++|+||||||||||+|+|+|+. +| ++|+|+++|.+. .
T Consensus 260 ~l~~~~l~~---~~--~~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~---~~~~~G~i~~~g~~~~~~~~~ 331 (490)
T PRK10938 260 RIVLNNGVV---SY--NDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDH---PQGYSNDLTLFGRRRGSGETI 331 (490)
T ss_pred eEEEeceEE---EE--CCeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCC---CcccCCeEEEecccCCCCCCH
Confidence 356555554 33 34579999999998 99999999999999999999988 65 699999998543 1
Q ss_pred hhhcCceEEEcCCCCCCc--cccccccchHHHHhccc------c---c--hHHHHHHHH-HhcCCcc-ccCCCcCCch-H
Q 001709 765 EGIAGGLCYCDSAGVNLQ--ELTMEAARFKDEMWMGI------R---D--LSRKTDLIV-LVHNLSH-KIPRYNYSSA-S 828 (1022)
Q Consensus 765 ~~lr~~IGyV~Q~~~~~~--~lTV~~~~~~ENI~~g~------~---~--~~~~v~~~L-~v~gL~~-~~~r~~~~LS-G 828 (1022)
...+++|||++|+...++ ..++ .+++.++. . . .++++++++ .+ ||.+ ..++++.+|| |
T Consensus 332 ~~~~~~i~~v~q~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~~LSgG 405 (490)
T PRK10938 332 WDIKKHIGYVSSSLHLDYRVSTSV-----RNVILSGFFDSIGIYQAVSDRQQKLAQQWLDIL-GIDKRTADAPFHSLSWG 405 (490)
T ss_pred HHHHhhceEECHHHHhhcccCCcH-----HHHHHhccccccccccCCCHHHHHHHHHHHHHc-CCchhhccCchhhCCHH
Confidence 234678999999433332 2456 66654321 0 1 234677888 87 9987 8899999999 9
Q ss_pred HHHHHHHH---------hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCe-EEEEec
Q 001709 829 GQQQPALS---------LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPST-TEVINS 887 (1022)
Q Consensus 829 qrQRvaIA---------LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~-~vVv~~ 887 (1022)
||||++|| |||||||++ +|...+..+...+.+. .....+ +++++|
T Consensus 406 q~qrv~la~al~~~p~lllLDEPt~g-------------LD~~~~~~l~~~L~~l-~~~~~~tviivsH 460 (490)
T PRK10938 406 QQRLALIVRALVKHPTLLILDEPLQG-------------LDPLNRQLVRRFVDVL-ISEGETQLLFVSH 460 (490)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCcccc-------------CCHHHHHHHHHHHHHH-HhcCCcEEEEEec
Confidence 99999999 999999996 7777777777666554 333344 566653
No 318
>PTZ00243 ABC transporter; Provisional
Probab=99.89 E-value=4.1e-23 Score=266.68 Aligned_cols=179 Identities=16% Similarity=0.141 Sum_probs=135.4
Q ss_pred ceeEEEEecCCCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc----hhhhcCceE
Q 001709 700 LSDVFIFCTSDFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD----QEGIAGGLC 772 (1022)
Q Consensus 700 l~~~~~~~~~~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~----~~~lr~~IG 772 (1022)
|+++++.|..+..++|+||||+|+ .|||+|+||||||||+++|+|++ +|++|+|++||.++ ...+|+.||
T Consensus 1311 f~nVsf~Y~~~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~---~p~~G~I~IDG~di~~i~l~~LR~~I~ 1387 (1560)
T PTZ00243 1311 FEGVQMRYREGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMV---EVCGGEIRVNGREIGAYGLRELRRQFS 1387 (1560)
T ss_pred EEEEEEEeCCCCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCC---CCCCcEEEECCEEcccCCHHHHHhcce
Confidence 677777765554569999999998 99999999999999999999999 99999999998764 678899999
Q ss_pred EEcCCCCCCccccccccchHHHHhccccchHHHHHHHH-HhcCC-----------ccccCCCcCCch-HHHHHHHHH---
Q 001709 773 YCDSAGVNLQELTMEAARFKDEMWMGIRDLSRKTDLIV-LVHNL-----------SHKIPRYNYSSA-SGQQQPALS--- 836 (1022)
Q Consensus 773 yV~Q~~~~~~~lTV~~~~~~ENI~~g~~~~~~~v~~~L-~v~gL-----------~~~~~r~~~~LS-GqrQRvaIA--- 836 (1022)
|||| ++.++..|| +|||.......++.+.+++ .+ +| +........+|| |||||++||
T Consensus 1388 iVpQ-dp~LF~gTI-----reNIdp~~~~sdeeI~~Al~~a-~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARAL 1460 (1560)
T PTZ00243 1388 MIPQ-DPVLFDGTV-----RQNVDPFLEASSAEVWAALELV-GLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARAL 1460 (1560)
T ss_pred EECC-CCccccccH-----HHHhCcccCCCHHHHHHHHHHC-CChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHH
Confidence 9999 555445899 9999875433345555666 44 44 444556667899 999999999
Q ss_pred -------hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCCcccccCcccccccC
Q 001709 837 -------LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCPYVMPGAVSASLSWG 903 (1022)
Q Consensus 837 -------LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~~V~~~~~~a~~l~~ 903 (1022)
||||||||+ +|..+...+...+.+.. ...|+++|.|-...+..+|..+.+.+
T Consensus 1461 L~~~~~ILlLDEATSa-------------LD~~te~~Iq~~L~~~~--~~~TvI~IAHRl~ti~~~DrIlVLd~ 1519 (1560)
T PTZ00243 1461 LKKGSGFILMDEATAN-------------IDPALDRQIQATVMSAF--SAYTVITIAHRLHTVAQYDKIIVMDH 1519 (1560)
T ss_pred hcCCCCEEEEeCCCcc-------------CCHHHHHHHHHHHHHHC--CCCEEEEEeccHHHHHhCCEEEEEEC
Confidence 999999997 67766666655554332 23466666544444455565555543
No 319
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.89 E-value=7.6e-23 Score=214.21 Aligned_cols=154 Identities=18% Similarity=0.104 Sum_probs=117.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccchhhhcCceEEEcCCCCCC--ccccccccchHHHHhcccc-
Q 001709 724 RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADDQEGIAGGLCYCDSAGVNL--QELTMEAARFKDEMWMGIR- 800 (1022)
Q Consensus 724 iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~~~~lr~~IGyV~Q~~~~~--~~lTV~~~~~~ENI~~g~~- 800 (1022)
+++|+|+||||||||+|+|+|++ +|++|+|.++|.+. ...+++++|++|+...+ +.+|+ .||+.++..
T Consensus 8 ~~~l~G~nGsGKSTLl~~l~G~~---~~~~G~i~~~g~~~-~~~~~~i~~v~q~~~~~~~~~~tv-----~~~l~~~~~~ 78 (223)
T TIGR03771 8 LLGLLGPNGAGKTTLLRAILGLI---PPAKGTVKVAGASP-GKGWRHIGYVPQRHEFAWDFPISV-----AHTVMSGRTG 78 (223)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC---CCCCceEEECCccc-hHhhCcEEEecccccccCCCCccH-----HHHHHhcccc
Confidence 99999999999999999999999 99999999999765 23467899999954432 34789 999876521
Q ss_pred ----------chHHHHHHHH-HhcCCccccCCCcCCch-HHHHHHHHH---------hhhccccCCChhHHHHHhhhhcc
Q 001709 801 ----------DLSRKTDLIV-LVHNLSHKIPRYNYSSA-SGQQQPALS---------LLLNEAKSLGIPWVLAITNKFSV 859 (1022)
Q Consensus 801 ----------~~~~~v~~~L-~v~gL~~~~~r~~~~LS-GqrQRvaIA---------LLLDEPTSad~~~v~~I~~~~~l 859 (1022)
...+++.+++ .+ ++.+..++++.+|| |||||++|| |||||||++ +
T Consensus 79 ~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~-------------L 144 (223)
T TIGR03771 79 HIGWLRRPCVADFAAVRDALRRV-GLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTG-------------L 144 (223)
T ss_pred ccccccCCcHHHHHHHHHHHHHh-CCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCccc-------------C
Confidence 1234577788 77 99999999999999 999999999 999999996 7
Q ss_pred cHHHHHHHHHHHHHHHHhCCCeEEEEecCCc-ccccCcccccc
Q 001709 860 SAHQQRAAIDAVMQAYQASPSTTEVINSCPY-VMPGAVSASLS 901 (1022)
Q Consensus 860 d~~~~~~~i~~ll~~~~~t~~~~vVv~~~~~-V~~~~~~a~~l 901 (1022)
|...+..+...+.+ +.....++++++|... +...++..+.+
T Consensus 145 D~~~~~~l~~~l~~-~~~~~~tvii~sH~~~~~~~~~d~i~~l 186 (223)
T TIGR03771 145 DMPTQELLTELFIE-LAGAGTAILMTTHDLAQAMATCDRVVLL 186 (223)
T ss_pred CHHHHHHHHHHHHH-HHHcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 77777777766644 4444446666653333 44445555544
No 320
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.89 E-value=1e-22 Score=209.35 Aligned_cols=136 Identities=15% Similarity=0.225 Sum_probs=107.7
Q ss_pred eeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc-hhhhcCceEEEcCCCCCCcccccc
Q 001709 712 TTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD-QEGIAGGLCYCDSAGVNLQELTME 787 (1022)
Q Consensus 712 ~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~-~~~lr~~IGyV~Q~~~~~~~lTV~ 787 (1022)
+++|+++||+++ +++|+||||||||||+|+|+|++. ++|++|+|.+++.++ ....++.|+|++|+...++.+|+
T Consensus 22 ~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~-~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t~- 99 (194)
T cd03213 22 KQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRT-GLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTV- 99 (194)
T ss_pred ccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-CCCCceEEEECCEeCchHhhhheEEEccCcccCCCCCcH-
Confidence 579999999998 999999999999999999999861 148999999998776 44567889999995444777899
Q ss_pred ccchHHHHhccccchHHHHHHHHHhcCCccccCCCcCCch-HHHHHHHHH---------hhhccccCCChhHHHHHhhhh
Q 001709 788 AARFKDEMWMGIRDLSRKTDLIVLVHNLSHKIPRYNYSSA-SGQQQPALS---------LLLNEAKSLGIPWVLAITNKF 857 (1022)
Q Consensus 788 ~~~~~ENI~~g~~~~~~~v~~~L~v~gL~~~~~r~~~~LS-GqrQRvaIA---------LLLDEPTSad~~~v~~I~~~~ 857 (1022)
+||+.++. .+ . +|| |||||++|| |||||||++
T Consensus 100 ----~~~i~~~~-----------~~-~----------~LS~G~~qrv~laral~~~p~illlDEP~~~------------ 141 (194)
T cd03213 100 ----RETLMFAA-----------KL-R----------GLSGGERKRVSIALELVSNPSLLFLDEPTSG------------ 141 (194)
T ss_pred ----HHHHHHHH-----------Hh-c----------cCCHHHHHHHHHHHHHHcCCCEEEEeCCCcC------------
Confidence 99986532 11 1 899 999999999 999999997
Q ss_pred cccHHHHHHHHHHHHHHHHhCCCeEEEEecCC
Q 001709 858 SVSAHQQRAAIDAVMQAYQASPSTTEVINSCP 889 (1022)
Q Consensus 858 ~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~ 889 (1022)
+|...+..+...+.+ +.....+++++.|..
T Consensus 142 -LD~~~~~~l~~~l~~-~~~~~~tiii~sh~~ 171 (194)
T cd03213 142 -LDSSSALQVMSLLRR-LADTGRTIICSIHQP 171 (194)
T ss_pred -CCHHHHHHHHHHHHH-HHhCCCEEEEEecCc
Confidence 777777777766644 444444666665443
No 321
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.89 E-value=7.3e-23 Score=240.93 Aligned_cols=154 Identities=18% Similarity=0.251 Sum_probs=117.9
Q ss_pred ccccCceeEEEEecCCCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccchhhhcCce
Q 001709 695 IRPEGLSDVFIFCTSDFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADDQEGIAGGL 771 (1022)
Q Consensus 695 i~~~~l~~~~~~~~~~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~~~~lr~~I 771 (1022)
+.+++++ +.+. +++++|+||||+|+ +++|+||||||||||||+|+|++ +|++|+|.+++ ...|
T Consensus 7 l~i~~l~---~~y~-~~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~---~p~~G~i~~~~-------~~~i 72 (556)
T PRK11819 7 YTMNRVS---KVVP-PKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVD---KEFEGEARPAP-------GIKV 72 (556)
T ss_pred EEEeeEE---EEeC-CCCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCC---CCCCceEEecC-------CCEE
Confidence 4544554 3332 14679999999999 99999999999999999999999 99999999874 2469
Q ss_pred EEEcCCCCCCccccccccchHHHHhccccc-------------------------------------------hHHHHHH
Q 001709 772 CYCDSAGVNLQELTMEAARFKDEMWMGIRD-------------------------------------------LSRKTDL 808 (1022)
Q Consensus 772 GyV~Q~~~~~~~lTV~~~~~~ENI~~g~~~-------------------------------------------~~~~v~~ 808 (1022)
|||+|++..++.+|+ .||+.++... ..+++..
T Consensus 73 ~~v~Q~~~~~~~~tv-----~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (556)
T PRK11819 73 GYLPQEPQLDPEKTV-----RENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEI 147 (556)
T ss_pred EEEecCCCCCCCCcH-----HHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHH
Confidence 999995444778999 9999875210 0234666
Q ss_pred HH-HhcCCccccCCCcCCch-HHHHHHHHH---------hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHh
Q 001709 809 IV-LVHNLSHKIPRYNYSSA-SGQQQPALS---------LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQA 877 (1022)
Q Consensus 809 ~L-~v~gL~~~~~r~~~~LS-GqrQRvaIA---------LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~ 877 (1022)
++ .+ ||.. .++++.+|| ||||||+|| |||||||++ +|...+..+...+. .+
T Consensus 148 ~l~~~-gl~~-~~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~-------------LD~~~~~~l~~~L~-~~-- 209 (556)
T PRK11819 148 AMDAL-RCPP-WDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNH-------------LDAESVAWLEQFLH-DY-- 209 (556)
T ss_pred HHHhC-CCCc-ccCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCc-------------CChHHHHHHHHHHH-hC--
Confidence 77 66 8864 789999999 999999999 999999997 66666665554442 22
Q ss_pred CCCeEEEEe
Q 001709 878 SPSTTEVIN 886 (1022)
Q Consensus 878 t~~~~vVv~ 886 (1022)
..++++++
T Consensus 210 -~~tviiis 217 (556)
T PRK11819 210 -PGTVVAVT 217 (556)
T ss_pred -CCeEEEEe
Confidence 34666665
No 322
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.89 E-value=5.5e-23 Score=239.55 Aligned_cols=164 Identities=13% Similarity=0.132 Sum_probs=124.4
Q ss_pred EEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc----hh-hhcCceEEEcCCC---CCCc
Q 001709 714 VFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD----QE-GIAGGLCYCDSAG---VNLQ 782 (1022)
Q Consensus 714 aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~----~~-~lr~~IGyV~Q~~---~~~~ 782 (1022)
+|++|||+|+ +++|+||||||||||+|+|+|++ +|++|+|.+++.++ .. ..+.+|+||+|+. ..++
T Consensus 278 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~---~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~ 354 (510)
T PRK15439 278 GFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLR---PARGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYL 354 (510)
T ss_pred CccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCC---CCCCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccC
Confidence 5999999999 99999999999999999999999 99999999998654 11 2356899999952 2467
Q ss_pred cccccccchHHHHhcc------c--cc--hHHHHHHHH-HhcCCc-cccCCCcCCch-HHHHHHHHH---------hhhc
Q 001709 783 ELTMEAARFKDEMWMG------I--RD--LSRKTDLIV-LVHNLS-HKIPRYNYSSA-SGQQQPALS---------LLLN 840 (1022)
Q Consensus 783 ~lTV~~~~~~ENI~~g------~--~~--~~~~v~~~L-~v~gL~-~~~~r~~~~LS-GqrQRvaIA---------LLLD 840 (1022)
.+|+ .+|+... . .. .++++++++ .+ ||. +..++++.+|| |||||++|| ||||
T Consensus 355 ~~t~-----~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~~LSgG~kqrl~la~al~~~p~lLlLD 428 (510)
T PRK15439 355 DAPL-----AWNVCALTHNRRGFWIKPARENAVLERYRRAL-NIKFNHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVD 428 (510)
T ss_pred CCcH-----HHHHHhhhhhhhccccChHHHHHHHHHHHHHc-CCCCCCccCccccCCcHHHHHHHHHHHHhhCCCEEEEC
Confidence 7899 9998531 1 11 234577888 87 997 78899999999 999999999 9999
Q ss_pred cccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCCcccccCcccccccCCCC
Q 001709 841 EAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCPYVMPGAVSASLSWGASG 906 (1022)
Q Consensus 841 EPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~~V~~~~~~a~~l~~~~~ 906 (1022)
|||++ +|...+..+...+.+ +.....++++++ |+.+.+..+++++.
T Consensus 429 EPt~g-------------LD~~~~~~l~~~l~~-l~~~g~tiIivs------Hd~~~i~~~~d~i~ 474 (510)
T PRK15439 429 EPTRG-------------VDVSARNDIYQLIRS-IAAQNVAVLFIS------SDLEEIEQMADRVL 474 (510)
T ss_pred CCCcC-------------cChhHHHHHHHHHHH-HHhCCCEEEEEC------CCHHHHHHhCCEEE
Confidence 99997 777777777765544 444444555554 44444444444443
No 323
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.89 E-value=1.1e-22 Score=204.83 Aligned_cols=134 Identities=21% Similarity=0.287 Sum_probs=103.3
Q ss_pred eEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc----hhhhcCceEEEcCCCCCCcccc
Q 001709 713 TVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD----QEGIAGGLCYCDSAGVNLQELT 785 (1022)
Q Consensus 713 ~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~----~~~lr~~IGyV~Q~~~~~~~lT 785 (1022)
++|++|||+++ +++|+||||||||||+|+|+|++ +|++|+|.+++.++ ....++.++|+||+...++ .|
T Consensus 16 ~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~---~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~-~t 91 (171)
T cd03228 16 PVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLY---DPTSGEILIDGVDLRDLDLESLRKNIAYVPQDPFLFS-GT 91 (171)
T ss_pred ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCC---CCCCCEEEECCEEhhhcCHHHHHhhEEEEcCCchhcc-ch
Confidence 69999999998 99999999999999999999999 99999999998654 2345678999999543354 68
Q ss_pred ccccchHHHHhccccchHHHHHHHHHhcCCccccCCCcCCch-HHHHHHHHH---------hhhccccCCChhHHHHHhh
Q 001709 786 MEAARFKDEMWMGIRDLSRKTDLIVLVHNLSHKIPRYNYSSA-SGQQQPALS---------LLLNEAKSLGIPWVLAITN 855 (1022)
Q Consensus 786 V~~~~~~ENI~~g~~~~~~~v~~~L~v~gL~~~~~r~~~~LS-GqrQRvaIA---------LLLDEPTSad~~~v~~I~~ 855 (1022)
+ +||+ || |||||++|| |||||||++
T Consensus 92 ~-----~e~l------------------------------LS~G~~~rl~la~al~~~p~llllDEP~~g---------- 126 (171)
T cd03228 92 I-----RENI------------------------------LSGGQRQRIAIARALLRDPPILILDEATSA---------- 126 (171)
T ss_pred H-----HHHh------------------------------hCHHHHHHHHHHHHHhcCCCEEEEECCCcC----------
Confidence 8 7776 99 999999999 999999996
Q ss_pred hhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCCcccccCccccc
Q 001709 856 KFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCPYVMPGAVSASL 900 (1022)
Q Consensus 856 ~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~~V~~~~~~a~~ 900 (1022)
+|...+..+...+.+. .. ..++++++|....+..++..+.
T Consensus 127 ---LD~~~~~~l~~~l~~~-~~-~~tii~~sh~~~~~~~~d~~~~ 166 (171)
T cd03228 127 ---LDPETEALILEALRAL-AK-GKTVIVIAHRLSTIRDADRIIV 166 (171)
T ss_pred ---CCHHHHHHHHHHHHHh-cC-CCEEEEEecCHHHHHhCCEEEE
Confidence 6777777666666443 32 3455555544333333444433
No 324
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.89 E-value=7.9e-23 Score=243.60 Aligned_cols=171 Identities=13% Similarity=0.118 Sum_probs=136.6
Q ss_pred CCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCC---ceEEEEccccc-hhhhcCceEEEcCCCCCCc
Q 001709 710 DFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTI---NSGNLDAEADD-QEGIAGGLCYCDSAGVNLQ 782 (1022)
Q Consensus 710 ~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~Pt---sG~I~idg~~~-~~~lr~~IGyV~Q~~~~~~ 782 (1022)
+.+++|+|||++++ +++|+|||||||||||++|+|.. +|. +|+|.+||.+. ....++.+|||+|++..++
T Consensus 36 ~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~---~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~ 112 (617)
T TIGR00955 36 PRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRS---PKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIP 112 (617)
T ss_pred CccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCC---CCCCcceeEEEECCEECCHHHHhhhceeeccccccCc
Confidence 35679999999999 99999999999999999999998 775 79999999776 5567888999999665588
Q ss_pred cccccccchHHHHhcccc----------chHHHHHHHH-HhcCCccccCCCcC------Cch-HHHHHHHHH--------
Q 001709 783 ELTMEAARFKDEMWMGIR----------DLSRKTDLIV-LVHNLSHKIPRYNY------SSA-SGQQQPALS-------- 836 (1022)
Q Consensus 783 ~lTV~~~~~~ENI~~g~~----------~~~~~v~~~L-~v~gL~~~~~r~~~------~LS-GqrQRvaIA-------- 836 (1022)
.+|| +|||.|+.. ..++++++++ .+ ||.+..+..+. .|| |||||++||
T Consensus 113 ~lTV-----~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~l-gL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~ 186 (617)
T TIGR00955 113 TLTV-----REHLMFQAHLRMPRRVTKKEKRERVDEVLQAL-GLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPP 186 (617)
T ss_pred cCcH-----HHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHc-CchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCC
Confidence 8999 999988643 1234678888 77 99888888776 599 999999999
Q ss_pred -hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCC--cccccCcccccccC
Q 001709 837 -LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCP--YVMPGAVSASLSWG 903 (1022)
Q Consensus 837 -LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~--~V~~~~~~a~~l~~ 903 (1022)
|||||||++ +|.+....++..+.+ +.....++++..|-+ .+.+.+|..+++.+
T Consensus 187 vlllDEPtsg-------------LD~~~~~~l~~~L~~-l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~ 242 (617)
T TIGR00955 187 LLFCDEPTSG-------------LDSFMAYSVVQVLKG-LAQKGKTIICTIHQPSSELFELFDKIILMAE 242 (617)
T ss_pred EEEeeCCCcc-------------hhHHHHHHHHHHHHH-HHhCCCEEEEEeCCCCHHHHHHhceEEEeeC
Confidence 999999997 788888877776654 444444555555554 35667777776654
No 325
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.88 E-value=9.5e-23 Score=206.73 Aligned_cols=128 Identities=23% Similarity=0.275 Sum_probs=101.0
Q ss_pred CeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc----hhhhcCceEEEcCCCCCCcc
Q 001709 711 FTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD----QEGIAGGLCYCDSAGVNLQE 783 (1022)
Q Consensus 711 ~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~----~~~lr~~IGyV~Q~~~~~~~ 783 (1022)
..++|+++||+++ +++|+||||||||||+++|+|++ +|++|+|.+++.++ ....++.|+|+||
T Consensus 11 ~~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~---~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q------- 80 (180)
T cd03214 11 GRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLL---KPSSGEILLDGKDLASLSPKELARKIAYVPQ------- 80 (180)
T ss_pred CeeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCC---CCCCcEEEECCEECCcCCHHHHHHHHhHHHH-------
Confidence 3679999999998 99999999999999999999999 99999999997654 2233455666666
Q ss_pred ccccccchHHHHhccccchHHHHHHHH-HhcCCccccCCCcCCch-HHHHHHHHH---------hhhccccCCChhHHHH
Q 001709 784 LTMEAARFKDEMWMGIRDLSRKTDLIV-LVHNLSHKIPRYNYSSA-SGQQQPALS---------LLLNEAKSLGIPWVLA 852 (1022)
Q Consensus 784 lTV~~~~~~ENI~~g~~~~~~~v~~~L-~v~gL~~~~~r~~~~LS-GqrQRvaIA---------LLLDEPTSad~~~v~~ 852 (1022)
++ .+ ||.+..++.+.+|| |||||++|| |||||||++
T Consensus 81 -------------------------~l~~~-gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~------- 127 (180)
T cd03214 81 -------------------------ALELL-GLAHLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSH------- 127 (180)
T ss_pred -------------------------HHHHc-CCHhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccC-------
Confidence 33 44 78777889999999 999999999 999999996
Q ss_pred HhhhhcccHHHHHHHHHHHHHHHHhC-CCeEEEEecC
Q 001709 853 ITNKFSVSAHQQRAAIDAVMQAYQAS-PSTTEVINSC 888 (1022)
Q Consensus 853 I~~~~~ld~~~~~~~i~~ll~~~~~t-~~~~vVv~~~ 888 (1022)
+|...+..+...+. .+... ..++++++|.
T Consensus 128 ------LD~~~~~~~~~~l~-~~~~~~~~tiii~sh~ 157 (180)
T cd03214 128 ------LDIAHQIELLELLR-RLARERGKTVVMVLHD 157 (180)
T ss_pred ------CCHHHHHHHHHHHH-HHHHhcCCEEEEEeCC
Confidence 67766666665554 44443 3466666533
No 326
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.88 E-value=2.8e-22 Score=218.50 Aligned_cols=143 Identities=16% Similarity=0.252 Sum_probs=106.7
Q ss_pred eeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccchhhhcCceEEEcCCCCCCccccccc
Q 001709 712 TTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADDQEGIAGGLCYCDSAGVNLQELTMEA 788 (1022)
Q Consensus 712 ~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~~~~lr~~IGyV~Q~~~~~~~lTV~~ 788 (1022)
+++|++|||+|+ +++|+|+||||||||+++|+|++ +|++|+|.+++ .|+|++|+...++ .|+
T Consensus 50 ~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~---~p~~G~I~i~g---------~i~yv~q~~~l~~-~tv-- 114 (282)
T cd03291 50 APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGEL---EPSEGKIKHSG---------RISFSSQFSWIMP-GTI-- 114 (282)
T ss_pred ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC---CCCCcEEEECC---------EEEEEeCcccccc-cCH--
Confidence 569999999998 99999999999999999999999 99999999876 3899999433355 699
Q ss_pred cchHHHHhccccchHHHHHHHH-HhcCCcc-----------ccCCCcCCch-HHHHHHHHH---------hhhccccCCC
Q 001709 789 ARFKDEMWMGIRDLSRKTDLIV-LVHNLSH-----------KIPRYNYSSA-SGQQQPALS---------LLLNEAKSLG 846 (1022)
Q Consensus 789 ~~~~ENI~~g~~~~~~~v~~~L-~v~gL~~-----------~~~r~~~~LS-GqrQRvaIA---------LLLDEPTSad 846 (1022)
+||+.++......++..++ .+ ++.+ ..++.+.+|| |||||++|| |||||||++
T Consensus 115 ---~enl~~~~~~~~~~~~~~l~~~-~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~g- 189 (282)
T cd03291 115 ---KENIIFGVSYDEYRYKSVVKAC-QLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGY- 189 (282)
T ss_pred ---HHHhhcccccCHHHHHHHHHHh-CCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCcc-
Confidence 9999886432112223333 33 3332 3445678999 999999999 999999997
Q ss_pred hhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEec
Q 001709 847 IPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINS 887 (1022)
Q Consensus 847 ~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~ 887 (1022)
+|...+..+...+++.+.. ..++++++|
T Consensus 190 ------------LD~~~~~~l~~~ll~~~~~-~~tIiiisH 217 (282)
T cd03291 190 ------------LDVFTEKEIFESCVCKLMA-NKTRILVTS 217 (282)
T ss_pred ------------CCHHHHHHHHHHHHHHhhC-CCEEEEEeC
Confidence 6766666666555444433 345555553
No 327
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.88 E-value=1.3e-22 Score=237.08 Aligned_cols=155 Identities=17% Similarity=0.206 Sum_probs=121.0
Q ss_pred cccccCceeEEEEecCCCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccchhhhcCc
Q 001709 694 FIRPEGLSDVFIFCTSDFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADDQEGIAGG 770 (1022)
Q Consensus 694 ~i~~~~l~~~~~~~~~~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~~~~lr~~ 770 (1022)
.+.+++++. .| ++..+|++|||+|+ +++|+||||||||||+|+|+|++ +|++|+|.+++ +..
T Consensus 319 ~l~~~~l~~---~~--~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~---~p~~G~i~~~~-------~~~ 383 (530)
T PRK15064 319 ALEVENLTK---GF--DNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGEL---EPDSGTVKWSE-------NAN 383 (530)
T ss_pred eEEEEeeEE---ee--CCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCC---CCCCeEEEECC-------ceE
Confidence 455555553 33 34679999999998 99999999999999999999999 99999999876 256
Q ss_pred eEEEcCCCC-C-CccccccccchHHHHhccc--cchHHHHHHHH-HhcCCc-cccCCCcCCch-HHHHHHHHH-------
Q 001709 771 LCYCDSAGV-N-LQELTMEAARFKDEMWMGI--RDLSRKTDLIV-LVHNLS-HKIPRYNYSSA-SGQQQPALS------- 836 (1022)
Q Consensus 771 IGyV~Q~~~-~-~~~lTV~~~~~~ENI~~g~--~~~~~~v~~~L-~v~gL~-~~~~r~~~~LS-GqrQRvaIA------- 836 (1022)
|||++|+.. . ++.+|+ .||+.+.. ...++++++++ .+ |+. +..++++.+|| |||||++||
T Consensus 384 i~~~~q~~~~~~~~~~t~-----~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p 457 (530)
T PRK15064 384 IGYYAQDHAYDFENDLTL-----FDWMSQWRQEGDDEQAVRGTLGRL-LFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKP 457 (530)
T ss_pred EEEEcccccccCCCCCcH-----HHHHHHhccCCccHHHHHHHHHHc-CCChhHhcCcccccCHHHHHHHHHHHHHhcCC
Confidence 999999543 2 456899 99986532 12345678888 87 984 68899999999 999999999
Q ss_pred --hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEe
Q 001709 837 --LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVIN 886 (1022)
Q Consensus 837 --LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~ 886 (1022)
|||||||++ +|...+..+...+.+ + ..++++++
T Consensus 458 ~lllLDEPt~~-------------LD~~~~~~l~~~l~~-~---~~tvi~vs 492 (530)
T PRK15064 458 NVLVMDEPTNH-------------MDMESIESLNMALEK-Y---EGTLIFVS 492 (530)
T ss_pred CEEEEcCCCCC-------------CCHHHHHHHHHHHHH-C---CCEEEEEe
Confidence 999999996 676666666655432 2 35666665
No 328
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.88 E-value=3.4e-23 Score=198.71 Aligned_cols=115 Identities=23% Similarity=0.334 Sum_probs=97.3
Q ss_pred EEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc----hhhhcCceEEEcCCCCCCcccccc
Q 001709 715 FKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD----QEGIAGGLCYCDSAGVNLQELTME 787 (1022)
Q Consensus 715 LkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~----~~~lr~~IGyV~Q~~~~~~~lTV~ 787 (1022)
|+||||+|+ +++|+|+||||||||+++|+|++ +|++|.|.+++.++ ....++.++|++|+...++.+|+
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~---~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv- 76 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLL---PPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTV- 76 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS---HESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBH-
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeecccc---ccccccccccccccccccccccccccccccccccccccccc-
Confidence 789999999 99999999999999999999999 99999999997665 35678899999995344788889
Q ss_pred ccchHHHHhccccchHHHHHHHH-HhcCCccccCCC----cCCch-HHHHHHHHH---------hhhccccC
Q 001709 788 AARFKDEMWMGIRDLSRKTDLIV-LVHNLSHKIPRY----NYSSA-SGQQQPALS---------LLLNEAKS 844 (1022)
Q Consensus 788 ~~~~~ENI~~g~~~~~~~v~~~L-~v~gL~~~~~r~----~~~LS-GqrQRvaIA---------LLLDEPTS 844 (1022)
.|| ...+++++++ .+ ++.+..++. +.+|| |||||++|| |||||||+
T Consensus 77 ----~~~------~~~~~~~~~l~~l-~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 77 ----REN------ESDERIEEVLKKL-GLEDLLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp ----HHH------HHHHHHHHHHHHT-THGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred ----ccc------ccccccccccccc-ccccccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 888 2445677777 66 665544444 49999 999999999 99999996
No 329
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.88 E-value=1.4e-22 Score=230.87 Aligned_cols=181 Identities=18% Similarity=0.191 Sum_probs=142.7
Q ss_pred ceeEEEEecCCCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc----hhhhcCceE
Q 001709 700 LSDVFIFCTSDFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD----QEGIAGGLC 772 (1022)
Q Consensus 700 l~~~~~~~~~~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~----~~~lr~~IG 772 (1022)
++++++......+++|++|||++. .++||||||||||||.|+|.|.. +|++|.|.+||.++ .+.+-++||
T Consensus 337 Ve~l~~~PPg~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w---~p~~G~VRLDga~l~qWd~e~lG~hiG 413 (580)
T COG4618 337 VERLTAAPPGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIW---PPTSGSVRLDGADLRQWDREQLGRHIG 413 (580)
T ss_pred EeeeeecCCCCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHccc---ccCCCcEEecchhhhcCCHHHhccccC
Confidence 334444444446789999999999 99999999999999999999999 99999999998654 677889999
Q ss_pred EEcCCCCCCccccccccchHHHHhccc-cchH---------HHHHHH-H-HhcCCccccCCCcCCch-HHHHHHHHH---
Q 001709 773 YCDSAGVNLQELTMEAARFKDEMWMGI-RDLS---------RKTDLI-V-LVHNLSHKIPRYNYSSA-SGQQQPALS--- 836 (1022)
Q Consensus 773 yV~Q~~~~~~~lTV~~~~~~ENI~~g~-~~~~---------~~v~~~-L-~v~gL~~~~~r~~~~LS-GqrQRvaIA--- 836 (1022)
|+|| +.-++..|| .|||+=.. ..+. ..+.++ + +.+|++..+..-...|| |||||++||
T Consensus 414 YLPQ-dVeLF~GTI-----aeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAl 487 (580)
T COG4618 414 YLPQ-DVELFDGTI-----AENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARAL 487 (580)
T ss_pred cCcc-cceecCCcH-----HHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHH
Confidence 9999 677666999 99996433 3111 113333 4 66788888999999999 999999999
Q ss_pred ------hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCCcccccCcccccccC
Q 001709 837 ------LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCPYVMPGAVSASLSWG 903 (1022)
Q Consensus 837 ------LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~~V~~~~~~a~~l~~ 903 (1022)
++||||-|. +|.. .+.++..++...++...++++|.|-+-++..+|..+.+.+
T Consensus 488 YG~P~lvVLDEPNsN-------------LD~~-GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~Dkilvl~~ 546 (580)
T COG4618 488 YGDPFLVVLDEPNSN-------------LDSE-GEAALAAAILAAKARGGTVVVIAHRPSALASVDKILVLQD 546 (580)
T ss_pred cCCCcEEEecCCCCC-------------cchh-HHHHHHHHHHHHHHcCCEEEEEecCHHHHhhcceeeeecC
Confidence 999999996 5554 4444445556667778899999988888888887777665
No 330
>PRK13409 putative ATPase RIL; Provisional
Probab=99.88 E-value=2e-22 Score=239.32 Aligned_cols=170 Identities=15% Similarity=0.064 Sum_probs=129.0
Q ss_pred cccccCceeEEEEecCCCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccchhhhcCc
Q 001709 694 FIRPEGLSDVFIFCTSDFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADDQEGIAGG 770 (1022)
Q Consensus 694 ~i~~~~l~~~~~~~~~~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~~~~lr~~ 770 (1022)
.+++++++. .+ +. ..|+++||+|+ +++|+||||||||||+|+|+|++ +|++|+|.++ ..
T Consensus 340 ~l~~~~ls~---~~--~~-~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~---~p~~G~I~~~---------~~ 401 (590)
T PRK13409 340 LVEYPDLTK---KL--GD-FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVL---KPDEGEVDPE---------LK 401 (590)
T ss_pred EEEEcceEE---EE--CC-EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCC---CCCceEEEEe---------ee
Confidence 355555653 22 22 35999999998 99999999999999999999999 9999999875 25
Q ss_pred eEEEcCCCCCCccccccccchHHHHhccccc--hHHHHHHHH-HhcCCccccCCCcCCch-HHHHHHHHH---------h
Q 001709 771 LCYCDSAGVNLQELTMEAARFKDEMWMGIRD--LSRKTDLIV-LVHNLSHKIPRYNYSSA-SGQQQPALS---------L 837 (1022)
Q Consensus 771 IGyV~Q~~~~~~~lTV~~~~~~ENI~~g~~~--~~~~v~~~L-~v~gL~~~~~r~~~~LS-GqrQRvaIA---------L 837 (1022)
|+|++|+...++.+|| +||+.++... ....+++++ .+ +|.+..++++.+|| ||||||+|| |
T Consensus 402 i~y~~Q~~~~~~~~tv-----~e~l~~~~~~~~~~~~~~~~L~~l-~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~ll 475 (590)
T PRK13409 402 ISYKPQYIKPDYDGTV-----EDLLRSITDDLGSSYYKSEIIKPL-QLERLLDKNVKDLSGGELQRVAIAACLSRDADLY 475 (590)
T ss_pred EEEecccccCCCCCcH-----HHHHHHHhhhcChHHHHHHHHHHC-CCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 8999995444777999 9999875321 234567788 77 99999999999999 999999999 9
Q ss_pred hhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCCcccccCcccccccCCCC
Q 001709 838 LLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCPYVMPGAVSASLSWGASG 906 (1022)
Q Consensus 838 LLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~~V~~~~~~a~~l~~~~~ 906 (1022)
||||||++ +|...+..+...+.+.......++++++ |+...+..+++++.
T Consensus 476 LLDEPt~~-------------LD~~~~~~l~~~l~~l~~~~g~tviivs------HD~~~~~~~aDrvi 525 (590)
T PRK13409 476 LLDEPSAH-------------LDVEQRLAVAKAIRRIAEEREATALVVD------HDIYMIDYISDRLM 525 (590)
T ss_pred EEeCCccC-------------CCHHHHHHHHHHHHHHHHhCCCEEEEEe------CCHHHHHHhCCEEE
Confidence 99999996 7777777777666444343445666665 44444444444443
No 331
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.88 E-value=2.3e-22 Score=207.35 Aligned_cols=131 Identities=17% Similarity=0.196 Sum_probs=102.2
Q ss_pred CeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcC--CCCCCCCceEEEEccccc----hhh-hcCceEEEcCCCCC
Q 001709 711 FTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQ--GKLVRTINSGNLDAEADD----QEG-IAGGLCYCDSAGVN 780 (1022)
Q Consensus 711 ~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL--~~~~~PtsG~I~idg~~~----~~~-lr~~IGyV~Q~~~~ 780 (1022)
+.++|+|+||+++ +++|+|+||||||||+|+|+|+ + +|++|+|.+++.++ ... .+..++|++|+...
T Consensus 12 ~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~---~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~ 88 (200)
T cd03217 12 GKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKY---EVTEGEILFKGEDITDLPPEERARLGIFLAFQYPPE 88 (200)
T ss_pred CEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcC---CCCccEEEECCEECCcCCHHHHhhCcEEEeecChhh
Confidence 4679999999998 9999999999999999999999 5 79999999998654 112 24569999994444
Q ss_pred CccccccccchHHHHhccccchHHHHHHHHHhcCCccccCCCcCCch-HHHHHHHHH---------hhhccccCCChhHH
Q 001709 781 LQELTMEAARFKDEMWMGIRDLSRKTDLIVLVHNLSHKIPRYNYSSA-SGQQQPALS---------LLLNEAKSLGIPWV 850 (1022)
Q Consensus 781 ~~~lTV~~~~~~ENI~~g~~~~~~~v~~~L~v~gL~~~~~r~~~~LS-GqrQRvaIA---------LLLDEPTSad~~~v 850 (1022)
++.+++ .+++ +..+.+|| |||||++|| |||||||++
T Consensus 89 ~~~~~~-----~~~l------------------------~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~----- 134 (200)
T cd03217 89 IPGVKN-----ADFL------------------------RYVNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSG----- 134 (200)
T ss_pred ccCccH-----HHHH------------------------hhccccCCHHHHHHHHHHHHHhcCCCEEEEeCCCcc-----
Confidence 777777 6655 12236899 999999999 999999996
Q ss_pred HHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEec
Q 001709 851 LAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINS 887 (1022)
Q Consensus 851 ~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~ 887 (1022)
+|...+..+...+.+. .....++++++|
T Consensus 135 --------LD~~~~~~l~~~L~~~-~~~~~tiii~sh 162 (200)
T cd03217 135 --------LDIDALRLVAEVINKL-REEGKSVLIITH 162 (200)
T ss_pred --------CCHHHHHHHHHHHHHH-HHCCCEEEEEec
Confidence 7777777777666543 333445666653
No 332
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.88 E-value=1.7e-22 Score=260.41 Aligned_cols=178 Identities=16% Similarity=0.095 Sum_probs=134.6
Q ss_pred ceeEEEEecCCCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc----hhhhcCceE
Q 001709 700 LSDVFIFCTSDFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD----QEGIAGGLC 772 (1022)
Q Consensus 700 l~~~~~~~~~~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~----~~~lr~~IG 772 (1022)
++++++.|..+..++|+||||+|+ .|||+|+||||||||+++|+|++ + ++|+|++||.++ ...+|++|+
T Consensus 1220 f~nVs~~Y~~~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~---~-~~G~I~IdG~di~~i~~~~lR~~is 1295 (1490)
T TIGR01271 1220 VQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLL---S-TEGEIQIDGVSWNSVTLQTWRKAFG 1295 (1490)
T ss_pred EEEEEEEeCCCCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhc---C-CCcEEEECCEEcccCCHHHHHhceE
Confidence 677777776556789999999999 99999999999999999999999 6 799999998664 677899999
Q ss_pred EEcCCCCCCccccccccchHHHHhccccchHHHHHHHH-HhcCC-----------ccccCCCcCCch-HHHHHHHHH---
Q 001709 773 YCDSAGVNLQELTMEAARFKDEMWMGIRDLSRKTDLIV-LVHNL-----------SHKIPRYNYSSA-SGQQQPALS--- 836 (1022)
Q Consensus 773 yV~Q~~~~~~~lTV~~~~~~ENI~~g~~~~~~~v~~~L-~v~gL-----------~~~~~r~~~~LS-GqrQRvaIA--- 836 (1022)
|||| ++.++..|+ ++||.......++.+.+++ .+ +| +.........|| |||||++||
T Consensus 1296 ~IpQ-dp~LF~GTI-----R~NLdp~~~~tdeei~~aL~~~-~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARAL 1368 (1490)
T TIGR01271 1296 VIPQ-KVFIFSGTF-----RKNLDPYEQWSDEEIWKVAEEV-GLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSI 1368 (1490)
T ss_pred EEeC-CCccCccCH-----HHHhCcccCCCHHHHHHHHHHC-CCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHH
Confidence 9999 555444899 9999765433445566666 54 54 334445566899 999999999
Q ss_pred ------hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCCcccccCcccccccC
Q 001709 837 ------LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCPYVMPGAVSASLSWG 903 (1022)
Q Consensus 837 ------LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~~V~~~~~~a~~l~~ 903 (1022)
||||||||+ +|..+...+...+.+..+ ..|+++|.|-...+..+|..+.+.+
T Consensus 1369 Lr~~~ILlLDEaTS~-------------lD~~Te~~I~~~L~~~~~--~~TvI~IaHRl~ti~~~DrIlvL~~ 1426 (1490)
T TIGR01271 1369 LSKAKILLLDEPSAH-------------LDPVTLQIIRKTLKQSFS--NCTVILSEHRVEALLECQQFLVIEG 1426 (1490)
T ss_pred hCCCCEEEEeCCccc-------------CCHHHHHHHHHHHHHHcC--CCEEEEEecCHHHHHhCCEEEEEEC
Confidence 999999997 777776666665544322 3466666555444555666655543
No 333
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.88 E-value=1.6e-22 Score=237.72 Aligned_cols=143 Identities=19% Similarity=0.283 Sum_probs=111.8
Q ss_pred CeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccchhhhcCceEEEcCCCCCCcccccc
Q 001709 711 FTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADDQEGIAGGLCYCDSAGVNLQELTME 787 (1022)
Q Consensus 711 ~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~~~~lr~~IGyV~Q~~~~~~~lTV~ 787 (1022)
.+++|+||||+|+ +++|+||||||||||||+|+|++ +|++|+|.+++ +..||||+|+...++++||
T Consensus 17 ~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~---~p~~G~i~~~~-------~~~i~~v~Q~~~~~~~~tv- 85 (552)
T TIGR03719 17 KKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVD---KEFNGEARPAP-------GIKVGYLPQEPQLDPTKTV- 85 (552)
T ss_pred CCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCC---CCCCceEEecC-------CCEEEEEeccCCCCCCCcH-
Confidence 4679999999999 99999999999999999999999 99999999874 2469999995444778999
Q ss_pred ccchHHHHhccccc-------------------h------------------------HHHHHHHH-HhcCCccccCCCc
Q 001709 788 AARFKDEMWMGIRD-------------------L------------------------SRKTDLIV-LVHNLSHKIPRYN 823 (1022)
Q Consensus 788 ~~~~~ENI~~g~~~-------------------~------------------------~~~v~~~L-~v~gL~~~~~r~~ 823 (1022)
.|||.++... . ..++.+++ .+ |+.. .++++
T Consensus 86 ----~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~-~~~~~ 159 (552)
T TIGR03719 86 ----RENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDAL-RCPP-WDADV 159 (552)
T ss_pred ----HHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhC-CCCc-ccCch
Confidence 9999875310 0 12344555 55 7753 68899
Q ss_pred CCch-HHHHHHHHH---------hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEec
Q 001709 824 YSSA-SGQQQPALS---------LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINS 887 (1022)
Q Consensus 824 ~~LS-GqrQRvaIA---------LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~ 887 (1022)
.+|| |||||++|| |||||||++ +|...+..+...+.+ + ..++++++|
T Consensus 160 ~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~-------------LD~~~~~~l~~~L~~-~---~~tvIiisH 216 (552)
T TIGR03719 160 TKLSGGERRRVALCRLLLSKPDMLLLDEPTNH-------------LDAESVAWLEQHLQE-Y---PGTVVAVTH 216 (552)
T ss_pred hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCC-------------CChHHHHHHHHHHHh-C---CCeEEEEeC
Confidence 9999 999999999 999999996 666666665554422 2 346666653
No 334
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.88 E-value=5.2e-22 Score=237.88 Aligned_cols=169 Identities=14% Similarity=0.145 Sum_probs=134.0
Q ss_pred eeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc----hhh----hcCceEEEcCCCCC
Q 001709 712 TTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD----QEG----IAGGLCYCDSAGVN 780 (1022)
Q Consensus 712 ~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~----~~~----lr~~IGyV~Q~~~~ 780 (1022)
.++|+|+||+++ +++|+||||||||||+|+|+|++ +|++|+|.+||.++ ... .++.++|+||+...
T Consensus 21 ~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~---~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l 97 (648)
T PRK10535 21 VEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLD---KPTSGTYRVAGQDVATLDADALAQLRREHFGFIFQRYHL 97 (648)
T ss_pred eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC---CCCCeEEEECCEEcCcCCHHHHHHHHhccEEEEeCCccc
Confidence 579999999999 99999999999999999999999 99999999998664 122 25789999995544
Q ss_pred CccccccccchHHHHhcccc-------chHHHHHHHH-HhcCCccccCCCcCCch-HHHHHHHHH---------hhhccc
Q 001709 781 LQELTMEAARFKDEMWMGIR-------DLSRKTDLIV-LVHNLSHKIPRYNYSSA-SGQQQPALS---------LLLNEA 842 (1022)
Q Consensus 781 ~~~lTV~~~~~~ENI~~g~~-------~~~~~v~~~L-~v~gL~~~~~r~~~~LS-GqrQRvaIA---------LLLDEP 842 (1022)
|+.+|+ .||+.++.. ...+++.+++ .+ ||.+..++.+.+|| |||||++|| ||||||
T Consensus 98 ~~~~tv-----~enl~~~~~~~~~~~~~~~~~~~~~l~~l-gl~~~~~~~~~~LS~Gq~qrv~LAraL~~~P~lLllDEP 171 (648)
T PRK10535 98 LSHLTA-----AQNVEVPAVYAGLERKQRLLRAQELLQRL-GLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEP 171 (648)
T ss_pred CCCCCH-----HHHHHHHHHHcCCCHHHHHHHHHHHHHHC-CChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 788999 999986432 1344677788 77 99999999999999 999999999 999999
Q ss_pred cCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCCcccccCcccccccC
Q 001709 843 KSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCPYVMPGAVSASLSWG 903 (1022)
Q Consensus 843 TSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~~V~~~~~~a~~l~~ 903 (1022)
|++ +|...++.+...+. .+.....++++++|.......++..+.+.+
T Consensus 172 ~~g-------------LD~~s~~~l~~ll~-~l~~~g~tilivsH~~~~~~~~d~i~~l~~ 218 (648)
T PRK10535 172 TGA-------------LDSHSGEEVMAILH-QLRDRGHTVIIVTHDPQVAAQAERVIEIRD 218 (648)
T ss_pred CCC-------------CCHHHHHHHHHHHH-HHHhcCCEEEEECCCHHHHHhCCEEEEEEC
Confidence 996 77777777666554 444444566777666665555666666554
No 335
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.88 E-value=5.3e-22 Score=214.19 Aligned_cols=147 Identities=14% Similarity=0.152 Sum_probs=114.6
Q ss_pred CCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccchhhhcCceEEEcCCCCCCccccc
Q 001709 710 DFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADDQEGIAGGLCYCDSAGVNLQELTM 786 (1022)
Q Consensus 710 ~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~~~~lr~~IGyV~Q~~~~~~~lTV 786 (1022)
..+++|++|||+|+ +++|+||||||||||+++|+|++ +|++|+|.+++. +++++|+...++.+|+
T Consensus 35 ~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~---~p~~G~I~~~g~---------~~~~~~~~~~~~~~tv 102 (264)
T PRK13546 35 KTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSL---SPTVGKVDRNGE---------VSVIAISAGLSGQLTG 102 (264)
T ss_pred CceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCc---CCCceEEEECCE---------EeEEecccCCCCCCcH
Confidence 34579999999998 99999999999999999999999 999999999873 4567774333667899
Q ss_pred cccchHHHHhcccc----c---hHHHHHHHH-HhcCCccccCCCcCCch-HHHHHHHHH---------hhhccccCCChh
Q 001709 787 EAARFKDEMWMGIR----D---LSRKTDLIV-LVHNLSHKIPRYNYSSA-SGQQQPALS---------LLLNEAKSLGIP 848 (1022)
Q Consensus 787 ~~~~~~ENI~~g~~----~---~~~~v~~~L-~v~gL~~~~~r~~~~LS-GqrQRvaIA---------LLLDEPTSad~~ 848 (1022)
.||+.++.. . ..+.++.++ .+ +|.+..++++.+|| |||||++|| |||||||++
T Consensus 103 -----~enl~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~g--- 173 (264)
T PRK13546 103 -----IENIEFKMLCMGFKRKEIKAMTPKIIEFS-ELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSV--- 173 (264)
T ss_pred -----HHHHHHHHHHcCCCHHHHHHHHHHHHHHc-CCchhhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCcccc---
Confidence 999976421 1 223455667 66 89999999999999 999999999 999999996
Q ss_pred HHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecC
Q 001709 849 WVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSC 888 (1022)
Q Consensus 849 ~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~ 888 (1022)
+|...+..+...+ ..+.....++++++|.
T Consensus 174 ----------LD~~~~~~l~~~L-~~~~~~g~tiIiisH~ 202 (264)
T PRK13546 174 ----------GDQTFAQKCLDKI-YEFKEQNKTIFFVSHN 202 (264)
T ss_pred ----------CCHHHHHHHHHHH-HHHHHCCCEEEEEcCC
Confidence 6766666666555 3444444466666533
No 336
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.87 E-value=3.5e-22 Score=231.40 Aligned_cols=178 Identities=13% Similarity=0.119 Sum_probs=129.8
Q ss_pred cccccCceeEEEEecCCCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc-----hh
Q 001709 694 FIRPEGLSDVFIFCTSDFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD-----QE 765 (1022)
Q Consensus 694 ~i~~~~l~~~~~~~~~~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~-----~~ 765 (1022)
.+++++++.. ..++|++|||+|+ +++|+||||||||||+|+|+|+. +|++|+|.+++.++ ..
T Consensus 250 ~i~~~~l~~~-------~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~---~p~~G~i~~~g~~i~~~~~~~ 319 (491)
T PRK10982 250 ILEVRNLTSL-------RQPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIR---EKSAGTITLHGKKINNHNANE 319 (491)
T ss_pred EEEEeCcccc-------cCcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCC---cCCccEEEECCEECCCCCHHH
Confidence 4665666531 1359999999999 99999999999999999999999 99999999998654 12
Q ss_pred hhcCceEEEcCCCC---CCccccccccchHHH-----Hhc-----cccc---hHHHHHHHH-HhcCCc-cccCCCcCCch
Q 001709 766 GIAGGLCYCDSAGV---NLQELTMEAARFKDE-----MWM-----GIRD---LSRKTDLIV-LVHNLS-HKIPRYNYSSA 827 (1022)
Q Consensus 766 ~lr~~IGyV~Q~~~---~~~~lTV~~~~~~EN-----I~~-----g~~~---~~~~v~~~L-~v~gL~-~~~~r~~~~LS 827 (1022)
.++++++|++|+.. .|+++|+ .+| +.+ +... ..++++.++ .+ ++. +..++++.+||
T Consensus 320 ~~~~~i~~~~q~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~~LS 393 (491)
T PRK10982 320 AINHGFALVTEERRSTGIYAYLDI-----GFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSM-RVKTPGHRTQIGSLS 393 (491)
T ss_pred HHHCCCEEcCCchhhCCcccCCcH-----HHheehhhhhhhcccccccCcHHHHHHHHHHHHhc-CccCCCcccccccCC
Confidence 34677999999532 3676776 555 432 1111 234567788 77 885 56899999999
Q ss_pred -HHHHHHHHH---------hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCCcccccCcc
Q 001709 828 -SGQQQPALS---------LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCPYVMPGAVS 897 (1022)
Q Consensus 828 -GqrQRvaIA---------LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~~V~~~~~~ 897 (1022)
|||||++|| |||||||++ +|...+..+...+ +.+.....++++++ |+.+.
T Consensus 394 gGq~qrv~la~al~~~p~illLDEPt~g-------------LD~~~~~~~~~~l-~~l~~~~~tvi~vs------Hd~~~ 453 (491)
T PRK10982 394 GGNQQKVIIGRWLLTQPEILMLDEPTRG-------------IDVGAKFEIYQLI-AELAKKDKGIIIIS------SEMPE 453 (491)
T ss_pred cHHHHHHHHHHHHhcCCCEEEEcCCCcc-------------cChhHHHHHHHHH-HHHHHCCCEEEEEC------CChHH
Confidence 999999999 999999996 7777777776655 44445555666665 55444
Q ss_pred cccccCCCCC
Q 001709 898 ASLSWGASGG 907 (1022)
Q Consensus 898 a~~l~~~~~~ 907 (1022)
+..+++++..
T Consensus 454 ~~~~~d~v~~ 463 (491)
T PRK10982 454 LLGITDRILV 463 (491)
T ss_pred HHhhCCEEEE
Confidence 4445555443
No 337
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.87 E-value=5.8e-22 Score=237.95 Aligned_cols=169 Identities=16% Similarity=0.127 Sum_probs=127.7
Q ss_pred ceeEEEEecCCCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccchhhhcCceEEEcC
Q 001709 700 LSDVFIFCTSDFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADDQEGIAGGLCYCDS 776 (1022)
Q Consensus 700 l~~~~~~~~~~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~~~~lr~~IGyV~Q 776 (1022)
++++.+.+. ++.++|+|+||+|+ +++|+||||||||||+|+|+|++ +|++|+|.+++ ++.|+||+|
T Consensus 454 ~~nv~~~~~-~~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~---~~~~G~i~~~~-------~~~i~~v~Q 522 (659)
T TIGR00954 454 FENIPLVTP-NGDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELW---PVYGGRLTKPA-------KGKLFYVPQ 522 (659)
T ss_pred EEeeEEECC-CCCeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCC---CCCCCeEeecC-------CCcEEEECC
Confidence 445544432 34579999999998 99999999999999999999999 99999998763 567999999
Q ss_pred CCCCCccccccccchHHHHhcccc--------chHHHHHHHH-HhcCCccccCCC---------cCCch-HHHHHHHHH-
Q 001709 777 AGVNLQELTMEAARFKDEMWMGIR--------DLSRKTDLIV-LVHNLSHKIPRY---------NYSSA-SGQQQPALS- 836 (1022)
Q Consensus 777 ~~~~~~~lTV~~~~~~ENI~~g~~--------~~~~~v~~~L-~v~gL~~~~~r~---------~~~LS-GqrQRvaIA- 836 (1022)
++..++ .|+ +|||.++.. ..++++.+++ .+ ++.++.+++ +.+|| |||||++||
T Consensus 523 ~~~l~~-~tv-----~eni~~~~~~~~~~~~~~~~~~i~~~l~~~-~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iAR 595 (659)
T TIGR00954 523 RPYMTL-GTL-----RDQIIYPDSSEDMKRRGLSDKDLEQILDNV-QLTHILEREGGWSAVQDWMDVLSGGEKQRIAMAR 595 (659)
T ss_pred CCCCCC-cCH-----HHHHhcCCChhhhhccCCCHHHHHHHHHHc-CCHHHHhhcCCcccccccccCCCHHHHHHHHHHH
Confidence 443355 599 999998742 1345677778 77 888776653 37999 999999999
Q ss_pred --------hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCCcccccCcccccccC
Q 001709 837 --------LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCPYVMPGAVSASLSWG 903 (1022)
Q Consensus 837 --------LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~~V~~~~~~a~~l~~ 903 (1022)
|||||||++ +|...+..+...+. +...+++++.|-......+|..+.+.+
T Consensus 596 al~~~p~illLDEpts~-------------LD~~~~~~l~~~l~----~~~~tvI~isH~~~~~~~~d~il~l~~ 653 (659)
T TIGR00954 596 LFYHKPQFAILDECTSA-------------VSVDVEGYMYRLCR----EFGITLFSVSHRKSLWKYHEYLLYMDG 653 (659)
T ss_pred HHHcCCCEEEEeCCccC-------------CCHHHHHHHHHHHH----HcCCEEEEEeCchHHHHhCCEEEEEeC
Confidence 999999997 66666555554442 234567777666656666676666643
No 338
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.87 E-value=5.6e-22 Score=233.16 Aligned_cols=169 Identities=21% Similarity=0.199 Sum_probs=126.1
Q ss_pred cccccCceeEEEEecCCCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccchhhhcCc
Q 001709 694 FIRPEGLSDVFIFCTSDFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADDQEGIAGG 770 (1022)
Q Consensus 694 ~i~~~~l~~~~~~~~~~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~~~~lr~~ 770 (1022)
.+.+++++. .+ +..++|+||||+|+ +++|+|||||||||||++|+|++ +|++|+|.++. + ..
T Consensus 322 ~l~~~~l~~---~~--~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~---~p~~G~i~~~~-~------~~ 386 (552)
T TIGR03719 322 VIEAENLSK---GF--GDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQE---QPDSGTIKIGE-T------VK 386 (552)
T ss_pred EEEEeeEEE---EE--CCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCC---CCCCeEEEECC-c------eE
Confidence 355555543 33 34679999999999 99999999999999999999999 99999999843 1 25
Q ss_pred eEEEcCCCC-CCccccccccchHHHHhcccc-----chHHHHHHHH-HhcCCcc-ccCCCcCCch-HHHHHHHHH-----
Q 001709 771 LCYCDSAGV-NLQELTMEAARFKDEMWMGIR-----DLSRKTDLIV-LVHNLSH-KIPRYNYSSA-SGQQQPALS----- 836 (1022)
Q Consensus 771 IGyV~Q~~~-~~~~lTV~~~~~~ENI~~g~~-----~~~~~v~~~L-~v~gL~~-~~~r~~~~LS-GqrQRvaIA----- 836 (1022)
|||++|+.. .++.+|+ .||+.++.. ....+++.++ .+ ||.+ ..++++.+|| |||||++||
T Consensus 387 i~~v~q~~~~~~~~~tv-----~e~l~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~~LSgGe~qrv~la~al~~ 460 (552)
T TIGR03719 387 LAYVDQSRDALDPNKTV-----WEEISGGLDIIQLGKREVPSRAYVGRF-NFKGSDQQKKVGQLSGGERNRVHLAKTLKS 460 (552)
T ss_pred EEEEeCCccccCCCCcH-----HHHHHhhccccccCcchHHHHHHHHhC-CCChhHhcCchhhCCHHHHHHHHHHHHHhh
Confidence 999999533 4777999 999988643 1233456677 77 9964 5799999999 999999999
Q ss_pred ----hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCCcccccCcccccccCCCC
Q 001709 837 ----LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCPYVMPGAVSASLSWGASG 906 (1022)
Q Consensus 837 ----LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~~V~~~~~~a~~l~~~~~ 906 (1022)
|||||||++ +|...+..+...+.+ + .+++++++ |+.+.+..+++++.
T Consensus 461 ~p~lllLDEPt~~-------------LD~~~~~~l~~~l~~-~---~~~viivs------Hd~~~~~~~~d~i~ 511 (552)
T TIGR03719 461 GGNVLLLDEPTND-------------LDVETLRALEEALLE-F---AGCAVVIS------HDRWFLDRIATHIL 511 (552)
T ss_pred CCCEEEEeCCCCC-------------CCHHHHHHHHHHHHH-C---CCeEEEEe------CCHHHHHHhCCEEE
Confidence 999999996 676666666655533 2 24666665 44444444444443
No 339
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.87 E-value=6.4e-22 Score=236.48 Aligned_cols=171 Identities=16% Similarity=0.143 Sum_probs=127.4
Q ss_pred cccccCceeEEEEecCCCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccchhhhcCc
Q 001709 694 FIRPEGLSDVFIFCTSDFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADDQEGIAGG 770 (1022)
Q Consensus 694 ~i~~~~l~~~~~~~~~~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~~~~lr~~ 770 (1022)
.+.+++++. .+ +++++|+||||+|+ +++|+||||||||||||+|+|++ +|++|+|.+ +.. -.
T Consensus 319 ~l~~~~l~~---~~--~~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~---~p~~G~i~~-~~~------~~ 383 (635)
T PRK11147 319 VFEMENVNY---QI--DGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQL---QADSGRIHC-GTK------LE 383 (635)
T ss_pred eEEEeeeEE---EE--CCeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC---CCCCcEEEE-CCC------cE
Confidence 456555553 33 34679999999999 99999999999999999999999 999999998 322 25
Q ss_pred eEEEcCCCC-CCccccccccchHHHHhcccc-----chHHHHHHHH-HhcCCc-cccCCCcCCch-HHHHHHHHH-----
Q 001709 771 LCYCDSAGV-NLQELTMEAARFKDEMWMGIR-----DLSRKTDLIV-LVHNLS-HKIPRYNYSSA-SGQQQPALS----- 836 (1022)
Q Consensus 771 IGyV~Q~~~-~~~~lTV~~~~~~ENI~~g~~-----~~~~~v~~~L-~v~gL~-~~~~r~~~~LS-GqrQRvaIA----- 836 (1022)
|||++|+.. .++.+|| .||+.++.. .....+..++ .+ ++. +..++++.+|| |||||++||
T Consensus 384 i~y~~q~~~~l~~~~tv-----~e~l~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~~LSgGekqRl~la~al~~ 457 (635)
T PRK11147 384 VAYFDQHRAELDPEKTV-----MDNLAEGKQEVMVNGRPRHVLGYLQDF-LFHPKRAMTPVKALSGGERNRLLLARLFLK 457 (635)
T ss_pred EEEEeCcccccCCCCCH-----HHHHHhhcccccccchHHHHHHHHHhc-CCCHHHHhChhhhCCHHHHHHHHHHHHHhc
Confidence 999999533 3778999 999987532 1244567778 77 885 57899999999 999999999
Q ss_pred ----hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCCc-ccccCccccccc
Q 001709 837 ----LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCPY-VMPGAVSASLSW 902 (1022)
Q Consensus 837 ----LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~~-V~~~~~~a~~l~ 902 (1022)
|||||||++ +|...+..+...+ +.+ ..++++++|... +...++..+++.
T Consensus 458 ~p~lLlLDEPt~~-------------LD~~~~~~l~~~l-~~~---~~tvi~vSHd~~~~~~~~d~i~~l~ 511 (635)
T PRK11147 458 PSNLLILDEPTND-------------LDVETLELLEELL-DSY---QGTVLLVSHDRQFVDNTVTECWIFE 511 (635)
T ss_pred CCCEEEEcCCCCC-------------CCHHHHHHHHHHH-HhC---CCeEEEEECCHHHHHHhcCEEEEEe
Confidence 999999996 6666655544433 322 456777765543 334455555553
No 340
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.87 E-value=8.2e-22 Score=232.09 Aligned_cols=155 Identities=24% Similarity=0.290 Sum_probs=119.6
Q ss_pred cccccCceeEEEEecCCCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccchhhhcCc
Q 001709 694 FIRPEGLSDVFIFCTSDFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADDQEGIAGG 770 (1022)
Q Consensus 694 ~i~~~~l~~~~~~~~~~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~~~~lr~~ 770 (1022)
.+.+++++. .+ +++++|+||||+|+ +++|+||||||||||+|+|+|++ +|++|+|.++. + ..
T Consensus 324 ~l~~~~l~~---~~--~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~---~p~~G~i~~~~-~------~~ 388 (556)
T PRK11819 324 VIEAENLSK---SF--GDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQE---QPDSGTIKIGE-T------VK 388 (556)
T ss_pred EEEEEeEEE---EE--CCeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC---CCCCeEEEECC-c------eE
Confidence 355555543 33 34679999999999 99999999999999999999999 99999999843 1 25
Q ss_pred eEEEcCCC-CCCccccccccchHHHHhcccc-----chHHHHHHHH-HhcCCcc-ccCCCcCCch-HHHHHHHHH-----
Q 001709 771 LCYCDSAG-VNLQELTMEAARFKDEMWMGIR-----DLSRKTDLIV-LVHNLSH-KIPRYNYSSA-SGQQQPALS----- 836 (1022)
Q Consensus 771 IGyV~Q~~-~~~~~lTV~~~~~~ENI~~g~~-----~~~~~v~~~L-~v~gL~~-~~~r~~~~LS-GqrQRvaIA----- 836 (1022)
||||+|+. ..++.+|+ .||+.++.. .....+..++ .+ |+.+ ..++++.+|| |||||++||
T Consensus 389 i~~v~q~~~~~~~~~tv-----~e~l~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~~LSgG~~qrv~la~al~~ 462 (556)
T PRK11819 389 LAYVDQSRDALDPNKTV-----WEEISGGLDIIKVGNREIPSRAYVGRF-NFKGGDQQKKVGVLSGGERNRLHLAKTLKQ 462 (556)
T ss_pred EEEEeCchhhcCCCCCH-----HHHHHhhcccccccccHHHHHHHHHhC-CCChhHhcCchhhCCHHHHHHHHHHHHHhc
Confidence 99999953 23677999 999987642 1223455677 77 9964 6799999999 999999999
Q ss_pred ----hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEe
Q 001709 837 ----LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVIN 886 (1022)
Q Consensus 837 ----LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~ 886 (1022)
|||||||++ +|...+..+...+.+ + .+++++++
T Consensus 463 ~p~lllLDEPt~~-------------LD~~~~~~l~~~l~~-~---~~tvi~vt 499 (556)
T PRK11819 463 GGNVLLLDEPTND-------------LDVETLRALEEALLE-F---PGCAVVIS 499 (556)
T ss_pred CCCEEEEcCCCCC-------------CCHHHHHHHHHHHHh-C---CCeEEEEE
Confidence 999999996 677777766655533 2 34666665
No 341
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.87 E-value=8.5e-22 Score=252.52 Aligned_cols=169 Identities=12% Similarity=0.135 Sum_probs=133.6
Q ss_pred CeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCC---CCceEEEEccccchhhhcCceEEEcCCCCCCccc
Q 001709 711 FTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVR---TINSGNLDAEADDQEGIAGGLCYCDSAGVNLQEL 784 (1022)
Q Consensus 711 ~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~---PtsG~I~idg~~~~~~lr~~IGyV~Q~~~~~~~l 784 (1022)
.+++|+|||++++ +++|+||||||||||||+|+|+. + |++|+|.+||.+.....++.+|||+|++..++.+
T Consensus 775 ~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~---~~g~~~~G~I~i~G~~~~~~~~~~i~yv~Q~~~~~~~~ 851 (1394)
T TIGR00956 775 KRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERV---TTGVITGGDRLVNGRPLDSSFQRSIGYVQQQDLHLPTS 851 (1394)
T ss_pred CcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCC---CCCCcceeEEEECCEECChhhhcceeeecccccCCCCC
Confidence 4679999999999 99999999999999999999998 7 6889999999776335678899999965558889
Q ss_pred cccccchHHHHhcccc-------c---hHHHHHHHH-HhcCCccccCCCcC----Cch-HHHHHHHHH----------hh
Q 001709 785 TMEAARFKDEMWMGIR-------D---LSRKTDLIV-LVHNLSHKIPRYNY----SSA-SGQQQPALS----------LL 838 (1022)
Q Consensus 785 TV~~~~~~ENI~~g~~-------~---~~~~v~~~L-~v~gL~~~~~r~~~----~LS-GqrQRvaIA----------LL 838 (1022)
|| +||+.|+.. . ..+++++++ .+ ||.+.+++.+. .|| |||||++|| ||
T Consensus 852 Tv-----~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l-~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~aL~~~P~~iLl 925 (1394)
T TIGR00956 852 TV-----RESLRFSAYLRQPKSVSKSEKMEYVEEVIKLL-EMESYADAVVGVPGEGLNVEQRKRLTIGVELVAKPKLLLF 925 (1394)
T ss_pred CH-----HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHc-CChhhCCCeeCCCCCCCCHHHhhHHHHHHHHHcCCCeEEE
Confidence 99 999998532 1 234678888 77 99988888887 799 999999999 89
Q ss_pred hccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCCc--ccccCccccccc
Q 001709 839 LNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCPY--VMPGAVSASLSW 902 (1022)
Q Consensus 839 LDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~~--V~~~~~~a~~l~ 902 (1022)
|||||++ +|...+..++..+.+. .....+++++.|-+. +...+|..+.+.
T Consensus 926 LDEPTsg-------------LD~~~~~~i~~~L~~l-a~~g~tvI~t~H~~~~~~~~~~D~vl~L~ 977 (1394)
T TIGR00956 926 LDEPTSG-------------LDSQTAWSICKLMRKL-ADHGQAILCTIHQPSAILFEEFDRLLLLQ 977 (1394)
T ss_pred EcCCCCC-------------CCHHHHHHHHHHHHHH-HHcCCEEEEEecCCCHHHHHhcCEEEEEc
Confidence 9999997 7777777777666544 344445555555443 234566666665
No 342
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=1.7e-22 Score=226.32 Aligned_cols=211 Identities=17% Similarity=0.147 Sum_probs=153.2
Q ss_pred cccccccCCCcchhhcccCCCCCC-CCCCcccccCceeEEEEecCCCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHH
Q 001709 666 SISVFPSIDSETIDCCMEHGSGSA-DDEKFIRPEGLSDVFIFCTSDFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKA 741 (1022)
Q Consensus 666 ~~~vf~~ld~~~~~~~~~~~~~~~-~~~~~i~~~~l~~~~~~~~~~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLkl 741 (1022)
+|.+|++++.+..........+.. .....+ .+.++.|.|. ..+++|+++||+++ .++++|++|+||||++++
T Consensus 233 me~mfdLl~~~~~v~d~pda~~L~~~~~g~v---~F~~V~F~y~-~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rl 308 (497)
T COG5265 233 MEKMFDLLDVEAEVSDAPDAPPLWPVRLGAV---AFINVSFAYD-PRRPILNGISFTIPLGKTVAIVGESGAGKSTILRL 308 (497)
T ss_pred HHHHHHhhccchhhccCCCCccccccccceE---EEEEEEeecc-ccchhhcCccccccCccEEEEEeCCCCcHHHHHHH
Confidence 788888887765322221111111 111122 2556555544 45789999999999 999999999999999999
Q ss_pred HHcCCCCCCCCceEEEEccccc----hhhhcCceEEEcCCCCCCccccccccchHHHHhccccc--h---------HHHH
Q 001709 742 ILGQGKLVRTINSGNLDAEADD----QEGIAGGLCYCDSAGVNLQELTMEAARFKDEMWMGIRD--L---------SRKT 806 (1022)
Q Consensus 742 L~GL~~~~~PtsG~I~idg~~~----~~~lr~~IGyV~Q~~~~~~~lTV~~~~~~ENI~~g~~~--~---------~~~v 806 (1022)
|.++| ++++|.|.+|+.++ ...+|+.||+||| +..+++.|+ +.|+.||... . .+..
T Consensus 309 lfRFy---D~~sG~I~id~qdir~vtq~slR~aIg~VPQ-DtvLFNDti-----~yni~ygr~~at~eev~aaa~~aqi~ 379 (497)
T COG5265 309 LFRFY---DVNSGSITIDGQDIRDVTQQSLRRAIGIVPQ-DTVLFNDTI-----AYNIKYGRPDATAEEVGAAAEAAQIH 379 (497)
T ss_pred HHHHh---CCcCceEEEcchhHHHhHHHHHHHHhCcCcc-cceehhhhH-----HHHHhccCccccHHHHHHHHHHhhhh
Confidence 99999 99999999998775 6788999999999 555556899 9999999873 0 1112
Q ss_pred HHHH-HhcCCccccCCCcCCch-HHHHHHHHH---------hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHH
Q 001709 807 DLIV-LVHNLSHKIPRYNYSSA-SGQQQPALS---------LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAY 875 (1022)
Q Consensus 807 ~~~L-~v~gL~~~~~r~~~~LS-GqrQRvaIA---------LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~ 875 (1022)
+.+. ...|++....++.-.|| |+||||||| |+|||+||+ +|.|+.+++...+ +..
T Consensus 380 ~fi~~lP~gy~t~VgerglklSggekqrvaiar~ilk~p~il~~deatsa-------------ldt~te~~iq~~l-~~~ 445 (497)
T COG5265 380 DFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILILDEATSA-------------LDTHTEQAIQAAL-REV 445 (497)
T ss_pred HHHHhCchhhhcccchheeeccCchHHHHHHHHHHhcCCCEEEEehhhhH-------------hhhhHHHHHHHHH-HHH
Confidence 2222 45567777788888999 999999999 999999997 8888877766655 444
Q ss_pred HhCCCeEEEEecCCcccccCcccccccCC
Q 001709 876 QASPSTTEVINSCPYVMPGAVSASLSWGA 904 (1022)
Q Consensus 876 ~~t~~~~vVv~~~~~V~~~~~~a~~l~~~ 904 (1022)
.. ..|++|+-|--..+.++|+.+.+.+-
T Consensus 446 ~~-~rttlviahrlsti~~adeiivl~~g 473 (497)
T COG5265 446 SA-GRTTLVIAHRLSTIIDADEIIVLDNG 473 (497)
T ss_pred hC-CCeEEEEeehhhhccCCceEEEeeCC
Confidence 43 35666665555555577777776553
No 343
>PLN03232 ABC transporter C family member; Provisional
Probab=99.87 E-value=3.7e-22 Score=257.48 Aligned_cols=173 Identities=16% Similarity=0.215 Sum_probs=133.0
Q ss_pred ceeEEEEecCC-CeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccchhhhcCceEEEc
Q 001709 700 LSDVFIFCTSD-FTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADDQEGIAGGLCYCD 775 (1022)
Q Consensus 700 l~~~~~~~~~~-~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~~~~lr~~IGyV~ 775 (1022)
++++++.+..+ ..++|+||||+|+ .++|+||+|||||||+++|+|++ +|++|.+. .+++.|+||+
T Consensus 617 ~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~---~~~~G~i~--------~~~~~Iayv~ 685 (1495)
T PLN03232 617 IKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGEL---SHAETSSV--------VIRGSVAYVP 685 (1495)
T ss_pred EEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC---cccCCCEE--------EecCcEEEEc
Confidence 56666665432 3679999999998 99999999999999999999999 99998763 3467899999
Q ss_pred CCCCCCccccccccchHHHHhccccchHHHHHHHH-Hh----------cCCccccCCCcCCch-HHHHHHHHH-------
Q 001709 776 SAGVNLQELTMEAARFKDEMWMGIRDLSRKTDLIV-LV----------HNLSHKIPRYNYSSA-SGQQQPALS------- 836 (1022)
Q Consensus 776 Q~~~~~~~lTV~~~~~~ENI~~g~~~~~~~v~~~L-~v----------~gL~~~~~r~~~~LS-GqrQRvaIA------- 836 (1022)
| ++.+++.|+ +|||.||....+++.++++ .. +|+....++...+|| |||||++||
T Consensus 686 Q-~p~Lf~gTI-----reNI~fg~~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~ 759 (1495)
T PLN03232 686 Q-VSWIFNATV-----RENILFGSDFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNS 759 (1495)
T ss_pred C-ccccccccH-----HHHhhcCCccCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCC
Confidence 9 555556899 9999999764445555555 32 233445667778999 999999999
Q ss_pred --hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCCcccccCcccccccC
Q 001709 837 --LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCPYVMPGAVSASLSWG 903 (1022)
Q Consensus 837 --LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~~V~~~~~~a~~l~~ 903 (1022)
||||||||+ +|+++.+.+...++.... ...|+++++|-...+..+|..+.+.+
T Consensus 760 ~IlLLDEptSa-------------LD~~t~~~I~~~~l~~~l-~~kT~IlvTH~~~~l~~aD~Ii~L~~ 814 (1495)
T PLN03232 760 DIYIFDDPLSA-------------LDAHVAHQVFDSCMKDEL-KGKTRVLVTNQLHFLPLMDRIILVSE 814 (1495)
T ss_pred CEEEEcCCccc-------------cCHHHHHHHHHHHhhhhh-cCCEEEEEECChhhHHhCCEEEEEeC
Confidence 999999997 788877777665554432 34577777776666777777777654
No 344
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=7.1e-22 Score=203.04 Aligned_cols=130 Identities=21% Similarity=0.187 Sum_probs=111.1
Q ss_pred ecCCCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc---hhhhcCceEEEcCCCCC
Q 001709 707 CTSDFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD---QEGIAGGLCYCDSAGVN 780 (1022)
Q Consensus 707 ~~~~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~---~~~lr~~IGyV~Q~~~~ 780 (1022)
|..+..+++.++||++. ++-|.||||||||||||+|+||. +|++|+|.+++..+ .+..++.+-|+-..+..
T Consensus 10 ~~R~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl---~p~~G~v~~~~~~i~~~~~~~~~~l~yLGH~~gi 86 (209)
T COG4133 10 CERGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLL---RPDAGEVYWQGEPIQNVRESYHQALLYLGHQPGI 86 (209)
T ss_pred hccCcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHccc---CCCCCeEEecCCCCccchhhHHHHHHHhhccccc
Confidence 44466789999999998 99999999999999999999999 99999999996554 44455666777664444
Q ss_pred CccccccccchHHHHhcccc--c--hHHHHHHHH-HhcCCccccCCCcCCch-HHHHHHHHH---------hhhccccCC
Q 001709 781 LQELTMEAARFKDEMWMGIR--D--LSRKTDLIV-LVHNLSHKIPRYNYSSA-SGQQQPALS---------LLLNEAKSL 845 (1022)
Q Consensus 781 ~~~lTV~~~~~~ENI~~g~~--~--~~~~v~~~L-~v~gL~~~~~r~~~~LS-GqrQRvaIA---------LLLDEPTSa 845 (1022)
=+.+|+ .||+.|-.. . ....+.+++ .| ||.++.|.+..+|| |||+||||| .||||||++
T Consensus 87 K~eLTa-----~ENL~F~~~~~~~~~~~~i~~Al~~v-gL~g~~dlp~~~LSAGQqRRvAlArL~ls~~pLWiLDEP~ta 160 (209)
T COG4133 87 KTELTA-----LENLHFWQRFHGSGNAATIWEALAQV-GLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLWILDEPFTA 160 (209)
T ss_pred cchhhH-----HHHHHHHHHHhCCCchhhHHHHHHHc-CcccccccchhhcchhHHHHHHHHHHHcCCCCceeecCcccc
Confidence 577999 999998654 1 357788889 88 99999999999999 999999999 899999997
No 345
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.87 E-value=1.5e-21 Score=194.86 Aligned_cols=155 Identities=15% Similarity=0.133 Sum_probs=125.6
Q ss_pred CCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCC---ceEEEEccccc--hhhhcCceEEEcCCCCCC
Q 001709 710 DFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTI---NSGNLDAEADD--QEGIAGGLCYCDSAGVNL 781 (1022)
Q Consensus 710 ~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~Pt---sG~I~idg~~~--~~~lr~~IGyV~Q~~~~~ 781 (1022)
++...|-+|||+|. +|.|+||||||||||+.-+.|.+ .++ +|++++|++++ ....+|+||++||++-+|
T Consensus 13 ~g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~L---a~~F~~~G~~~l~~~~l~~lPa~qRq~GiLFQD~lLF 89 (213)
T COG4136 13 PGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGAL---AGQFSCTGELWLNEQRLDMLPAAQRQIGILFQDALLF 89 (213)
T ss_pred CCceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhc---ccCcceeeEEEECCeeccccchhhhheeeeecccccc
Confidence 45678999999998 99999999999999999999999 554 79999998776 455688999999954449
Q ss_pred ccccccccchHHHHhccccc------hHHHHHHHH-HhcCCccccCCCcCCch-HHHHHHHHH---------hhhccccC
Q 001709 782 QELTMEAARFKDEMWMGIRD------LSRKTDLIV-LVHNLSHKIPRYNYSSA-SGQQQPALS---------LLLNEAKS 844 (1022)
Q Consensus 782 ~~lTV~~~~~~ENI~~g~~~------~~~~v~~~L-~v~gL~~~~~r~~~~LS-GqrQRvaIA---------LLLDEPTS 844 (1022)
|+++| .+||.|.... .++.++.+| ++ ||+.+.++.|.+|| |||-||++- ||||||||
T Consensus 90 phlsV-----g~Nl~fAlp~~~KG~aRr~~a~aAL~~~-gL~g~f~~dP~tlSGGQrARvaL~R~Lla~Pk~lLLDEPFS 163 (213)
T COG4136 90 PHLSV-----GQNLLFALPATLKGNARRNAANAALERS-GLDGAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFS 163 (213)
T ss_pred ccccc-----ccceEEecCcccccHHHHhhHHHHHHHh-ccchhhhcChhhcCcchHHHHHHHHHHHhCcceeeeCCchh
Confidence 99999 9999998763 455678888 98 99999999999999 999999887 99999999
Q ss_pred CChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEe
Q 001709 845 LGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVIN 886 (1022)
Q Consensus 845 ad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~ 886 (1022)
- +|..-|...-+.+-....+..--++.|+
T Consensus 164 ~-------------LD~ALR~qfR~wVFs~~r~agiPtv~VT 192 (213)
T COG4136 164 R-------------LDVALRDQFRQWVFSEVRAAGIPTVQVT 192 (213)
T ss_pred H-------------HHHHHHHHHHHHHHHHHHhcCCCeEEEe
Confidence 5 4444444444444455555555566665
No 346
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.86 E-value=6.6e-22 Score=206.43 Aligned_cols=141 Identities=15% Similarity=0.094 Sum_probs=105.0
Q ss_pred eEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEE-EccccchhhhcCceEEEcCCCCCCccccccc
Q 001709 713 TVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNL-DAEADDQEGIAGGLCYCDSAGVNLQELTMEA 788 (1022)
Q Consensus 713 ~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~-idg~~~~~~lr~~IGyV~Q~~~~~~~lTV~~ 788 (1022)
++|+||||+|+ +++|+||||||||||+|+|+|++ +|++|+|. +++... .++ +....++.+|+
T Consensus 1 ~vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~---~~~sG~i~~~~~~~~------~~~---~~~~l~~~ltv-- 66 (213)
T PRK15177 1 VVLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLD---APDEGDFIGLRGDAL------PLG---ANSFILPGLTG-- 66 (213)
T ss_pred CeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCc---cCCCCCEEEecCcee------ccc---cccccCCcCcH--
Confidence 37999999999 99999999999999999999999 99999997 665322 122 32334778999
Q ss_pred cchHHHHhcccc--c--hHHHHHHHH-HhcCCccccCCCcCCch-HHHHHHHHH---------hhhccccCCChhHHHHH
Q 001709 789 ARFKDEMWMGIR--D--LSRKTDLIV-LVHNLSHKIPRYNYSSA-SGQQQPALS---------LLLNEAKSLGIPWVLAI 853 (1022)
Q Consensus 789 ~~~~ENI~~g~~--~--~~~~v~~~L-~v~gL~~~~~r~~~~LS-GqrQRvaIA---------LLLDEPTSad~~~v~~I 853 (1022)
+||+.+... . ..+..+.+. .. +|....++++.+|| |||||++|| +||||||++
T Consensus 67 ---~enl~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~-------- 134 (213)
T PRK15177 67 ---EENARMMASLYGLDGDEFSHFCYQLT-QLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYT-------- 134 (213)
T ss_pred ---HHHHHHHHHHcCCCHHHHHHHHHHHh-ChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCcc--------
Confidence 999987543 1 222233333 44 88888899999999 999999999 999999986
Q ss_pred hhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEe
Q 001709 854 TNKFSVSAHQQRAAIDAVMQAYQASPSTTEVIN 886 (1022)
Q Consensus 854 ~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~ 886 (1022)
+|...+..+...+.+..+. .++++++
T Consensus 135 -----lD~~~~~~~~~~l~~~~~~--~~ii~vs 160 (213)
T PRK15177 135 -----GDNATQLRMQAALACQLQQ--KGLIVLT 160 (213)
T ss_pred -----CCHHHHHHHHHHHHHHhhC--CcEEEEE
Confidence 5666666666555444332 3555555
No 347
>PLN02847 triacylglycerol lipase
Probab=99.86 E-value=1.2e-21 Score=227.63 Aligned_cols=196 Identities=24% Similarity=0.330 Sum_probs=126.3
Q ss_pred CChhhhHHHHHHHHhhcccccCCcceeehccccccccccCcEEEeeccCCCCCCCCceeeeccc--CCeEEEEEcCCCCc
Q 001709 68 ESVSDLQDILCCMVLSECVYKKPVIEIVRAVNKFKADFGGQIVSLERVQPSSDHVPHRYLLAEA--GDTLFASFIGTKQY 145 (1022)
Q Consensus 68 ~s~~dlqdll~c~~aSecaY~~p~~elv~~~N~f~~d~~gqI~~~~~vq~s~Dh~~~rylvae~--~~~IVVAFRGT~s~ 145 (1022)
.-.+++.+++..+-+|.-.|+.+-..+.... .+ ....|.. .. +...-....|+|+.+ .+.|||+||||.++
T Consensus 118 ~~~~El~~~lr~l~~c~~~~kk~~~~fl~~~-Gi---~~eDVL~-~~--~ks~i~kPaffVavDh~~K~IVVsIRGT~Si 190 (633)
T PLN02847 118 EIIAELIVLLRLLTLCMLFSKKPFPVFLELA-GF---SQEDVLI-QK--PKAGILKPAFTIIRDENSKCFLLLIRGTHSI 190 (633)
T ss_pred hHHHHHHHHHHHHHHHHHhccchHHHHHHHc-CC---CHHHEEE-ee--cccccCCCCeEEEEeCCCCEEEEEECCCCCH
Confidence 3456667777555555566665422222111 11 1112221 11 122233455766554 58999999999999
Q ss_pred hhhhhhccccccccccccchhhhhhhccccchhhhhccCCCCCCCCCCCCCcccCCCCCCcccHhHHHHHhcChhHH---
Q 001709 146 KDVMTDANILQGAIFHEDAIEDMEGIELGESKQAKEQKGNGENRWNPLEKPRQLKDKPKPAAHRGFLARAKGIPALE--- 222 (1022)
Q Consensus 146 ~DwitDl~~~q~~~f~~~~l~~~~~~~a~~~~~~~~q~g~~~~~g~~~~~~k~~~~~~~~~VH~GFl~a~~~I~~~~--- 222 (1022)
.||+||+++...++ +.....+ .|.. ....+.+|+||+.+|+.+....
T Consensus 191 ~D~LTDL~~~~vPf-~~s~l~~---------------------gG~~--------n~~~G~AH~Gml~AArwI~~~i~~~ 240 (633)
T PLN02847 191 KDTLTAATGAVVPF-HHSVLHD---------------------GGVS--------NLVLGYAHCGMVAAARWIAKLSTPC 240 (633)
T ss_pred HHHHHhcccccccC-Ccccccc---------------------cCcc--------cCcCCccCccHHHHHHHHHHHHHHH
Confidence 99999998754332 1111110 0100 0124579999999998876543
Q ss_pred -HHHHHhcCCCeEEEeccChhHHHHHHHHHHHHHHHhhhcccccCCCcceEEEEeCCCccccHHHHHHHHhcCCCceeEE
Q 001709 223 -LYRLAQKKKRKLVLCGHSLGGAVAALATLAILRVVAASSSLKENDKVQVKCITFSQPPVGNAALRDYVNRKGWQHYFKS 301 (1022)
Q Consensus 223 -l~~l~~~p~ykLVvTGHSLGGALAtLAAl~LLr~~~~~~~~~~~~~~~V~vyTFGqPRVGN~aFA~~v~~~~~~~~f~R 301 (1022)
...+.+||+|+|+|||||||||+|+|+++.+ +.. . ...++.|||||.|.+=+..++.+.. .+.++
T Consensus 241 L~kal~~~PdYkLVITGHSLGGGVAALLAilL-Re~------~--~fssi~CyAFgPp~cvS~eLAe~~k-----~fVTS 306 (633)
T PLN02847 241 LLKALDEYPDFKIKIVGHSLGGGTAALLTYIL-REQ------K--EFSSTTCVTFAPAACMTWDLAESGK-----HFITT 306 (633)
T ss_pred HHHHHHHCCCCeEEEeccChHHHHHHHHHHHH-hcC------C--CCCCceEEEecCchhcCHHHHHHhh-----hheEE
Confidence 2346789999999999999999999998544 421 1 1235789999998888888887753 34568
Q ss_pred EeeCCCcccccCC
Q 001709 302 YCIPEDLVPRILS 314 (1022)
Q Consensus 302 VVh~~DiVPrLP~ 314 (1022)
|||.+|+||||+.
T Consensus 307 VVng~DIVPRLS~ 319 (633)
T PLN02847 307 IINGSDLVPTFSA 319 (633)
T ss_pred EEeCCCCCccCCH
Confidence 9999999999985
No 348
>PLN03130 ABC transporter C family member; Provisional
Probab=99.86 E-value=6.7e-22 Score=256.17 Aligned_cols=172 Identities=15% Similarity=0.203 Sum_probs=133.4
Q ss_pred ceeEEEEecCC-CeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCc-eEEEEccccchhhhcCceEEE
Q 001709 700 LSDVFIFCTSD-FTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTIN-SGNLDAEADDQEGIAGGLCYC 774 (1022)
Q Consensus 700 l~~~~~~~~~~-~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~Pts-G~I~idg~~~~~~lr~~IGyV 774 (1022)
++++++.+..+ ..++|+||||+|+ .++|+||+|||||||+++|+|++ +|++ |+|.+ ++.|+||
T Consensus 617 ~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~---~~~~GG~I~l---------~~~Iayv 684 (1622)
T PLN03130 617 IKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGEL---PPRSDASVVI---------RGTVAYV 684 (1622)
T ss_pred EEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhh---ccCCCceEEE---------cCeEEEE
Confidence 56666665432 3679999999998 99999999999999999999999 9999 89974 5679999
Q ss_pred cCCCCCCccccccccchHHHHhccccchHHHHHHHH-Hh----------cCCccccCCCcCCch-HHHHHHHHH------
Q 001709 775 DSAGVNLQELTMEAARFKDEMWMGIRDLSRKTDLIV-LV----------HNLSHKIPRYNYSSA-SGQQQPALS------ 836 (1022)
Q Consensus 775 ~Q~~~~~~~lTV~~~~~~ENI~~g~~~~~~~v~~~L-~v----------~gL~~~~~r~~~~LS-GqrQRvaIA------ 836 (1022)
+| ++.+++.|| +|||.||...++++.++++ .. +|+....++...+|| |||||++||
T Consensus 685 ~Q-~p~LfngTI-----reNI~fg~~~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~ 758 (1622)
T PLN03130 685 PQ-VSWIFNATV-----RDNILFGSPFDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSN 758 (1622)
T ss_pred cC-ccccCCCCH-----HHHHhCCCcccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCC
Confidence 99 566556899 9999999764445555554 32 234445667788999 999999999
Q ss_pred ---hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCCcccccCcccccccC
Q 001709 837 ---LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCPYVMPGAVSASLSWG 903 (1022)
Q Consensus 837 ---LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~~V~~~~~~a~~l~~ 903 (1022)
||||||||+ +|++..+.+...++..+. ...|+++++|-...+..+|..+.+.+
T Consensus 759 ~~IlLLDEptSA-------------LD~~~~~~I~~~~l~~~l-~~kTvIlVTH~l~~l~~aD~Ii~L~~ 814 (1622)
T PLN03130 759 SDVYIFDDPLSA-------------LDAHVGRQVFDKCIKDEL-RGKTRVLVTNQLHFLSQVDRIILVHE 814 (1622)
T ss_pred CCEEEECCCccc-------------cCHHHHHHHHHHHhhHHh-cCCEEEEEECCHhHHHhCCEEEEEeC
Confidence 999999997 788877766655544332 34577777777667777777777654
No 349
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.86 E-value=4e-22 Score=205.84 Aligned_cols=127 Identities=20% Similarity=0.260 Sum_probs=112.4
Q ss_pred CCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEcc-ccc-----hhhhcCceEEEcCCCCC
Q 001709 710 DFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAE-ADD-----QEGIAGGLCYCDSAGVN 780 (1022)
Q Consensus 710 ~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg-~~~-----~~~lr~~IGyV~Q~~~~ 780 (1022)
++..||+++||+|. .-+|||||||||||+|.+|+|.. +|+.|+|++++ .++ ..-.|.+||--||.+..
T Consensus 16 ~GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKt---rp~~G~v~f~g~~dl~~~~e~~IAr~GIGRKFQ~PtV 92 (249)
T COG4674 16 GGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKT---RPQEGEVLFDGDTDLTKLPEHRIARAGIGRKFQKPTV 92 (249)
T ss_pred cceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccC---CCCcceEEEcCchhhccCCHHHHHHhccCccccCCee
Confidence 56789999999998 88899999999999999999999 99999999997 554 33457899999995555
Q ss_pred CccccccccchHHHHhcccc---------------chHHHHHHHH-HhcCCccccCCCcCCch-HHHHHHHHH-------
Q 001709 781 LQELTMEAARFKDEMWMGIR---------------DLSRKTDLIV-LVHNLSHKIPRYNYSSA-SGQQQPALS------- 836 (1022)
Q Consensus 781 ~~~lTV~~~~~~ENI~~g~~---------------~~~~~v~~~L-~v~gL~~~~~r~~~~LS-GqrQRvaIA------- 836 (1022)
|..+|| +||+.+... +.+++++++| .+ ||.+..++....|| ||||++.|+
T Consensus 93 fe~ltV-----~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~i-gL~~~~~~~A~~LSHGqKQwLEIGMll~Q~P 166 (249)
T COG4674 93 FENLTV-----RENLELALNRDKSVFASLFARLRAEERRRIDELLATI-GLGDERDRLAALLSHGQKQWLEIGMLLAQDP 166 (249)
T ss_pred hhhccH-----HHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHc-ccchhhhhhhhhhccchhhhhhhheeeccCC
Confidence 999999 999987543 1456899999 77 99999999999999 999999999
Q ss_pred --hhhccccCC
Q 001709 837 --LLLNEAKSL 845 (1022)
Q Consensus 837 --LLLDEPTSa 845 (1022)
||||||+++
T Consensus 167 ~lLLlDEPvAG 177 (249)
T COG4674 167 KLLLLDEPVAG 177 (249)
T ss_pred cEEEecCccCC
Confidence 999999996
No 350
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.86 E-value=1.8e-21 Score=209.20 Aligned_cols=169 Identities=15% Similarity=0.112 Sum_probs=122.1
Q ss_pred eeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEE-----------Eccccc-h--hhhc---Cce
Q 001709 712 TTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNL-----------DAEADD-Q--EGIA---GGL 771 (1022)
Q Consensus 712 ~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~-----------idg~~~-~--~~lr---~~I 771 (1022)
..+|+|||+ ++ +++|+||||||||||||+|+|++ +|++|+|. +++.++ . ...+ ..+
T Consensus 14 ~~~l~~i~~-i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~---~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i 89 (255)
T cd03236 14 SFKLHRLPV-PREGQVLGLVGPNGIGKSTALKILAGKL---KPNLGKFDDPPDWDEILDEFRGSELQNYFTKLLEGDVKV 89 (255)
T ss_pred chhhhcCCC-CCCCCEEEEECCCCCCHHHHHHHHhCCc---CCCCceEeeccccchhhhhccCchhhhhhHHhhhcccce
Confidence 469999995 76 99999999999999999999999 99999996 666554 1 1222 247
Q ss_pred EEEcCCCCCCccccccccchHHHHhcccc--chHHHHHHHH-HhcCCccccCCCcCCch-HHHHHHHHH---------hh
Q 001709 772 CYCDSAGVNLQELTMEAARFKDEMWMGIR--DLSRKTDLIV-LVHNLSHKIPRYNYSSA-SGQQQPALS---------LL 838 (1022)
Q Consensus 772 GyV~Q~~~~~~~lTV~~~~~~ENI~~g~~--~~~~~v~~~L-~v~gL~~~~~r~~~~LS-GqrQRvaIA---------LL 838 (1022)
+|++|....++ .++ .+|+.+... ..++.+.+++ .+ ||.+..++.+.+|| |||||++|| +|
T Consensus 90 ~~~~~~~~~~~-~~~-----~~~i~~~l~~~~~~~~~~~~l~~~-gl~~~~~~~~~~LS~G~~qrv~laral~~~p~ill 162 (255)
T cd03236 90 IVKPQYVDLIP-KAV-----KGKVGELLKKKDERGKLDELVDQL-ELRHVLDRNIDQLSGGELQRVAIAAALARDADFYF 162 (255)
T ss_pred eeecchhccCc-hHH-----HHHHHHHhchhHHHHHHHHHHHHc-CCchhhcCChhhCCHHHHHHHHHHHHHHhCCCEEE
Confidence 89999433355 466 666655433 2345677888 77 99998999999999 999999999 99
Q ss_pred hccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCCcccc-cCcccccccCCC
Q 001709 839 LNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCPYVMP-GAVSASLSWGAS 905 (1022)
Q Consensus 839 LDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~~V~~-~~~~a~~l~~~~ 905 (1022)
|||||++ +|...+..+...+.+ +.....++++++|....+. .++..+.+.+..
T Consensus 163 lDEPts~-------------LD~~~~~~l~~~l~~-l~~~~~tIIiiSHd~~~~~~~ad~i~~l~~~~ 216 (255)
T cd03236 163 FDEPSSY-------------LDIKQRLNAARLIRE-LAEDDNYVLVVEHDLAVLDYLSDYIHCLYGEP 216 (255)
T ss_pred EECCCCC-------------CCHHHHHHHHHHHHH-HHhcCCEEEEEECCHHHHHHhCCEEEEECCCC
Confidence 9999997 666666666655543 3334456666654433333 355555555543
No 351
>PLN03140 ABC transporter G family member; Provisional
Probab=99.86 E-value=2.5e-21 Score=248.39 Aligned_cols=169 Identities=18% Similarity=0.201 Sum_probs=135.0
Q ss_pred CeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCC--CCceEEEEccccc-hhhhcCceEEEcCCCCCCccc
Q 001709 711 FTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVR--TINSGNLDAEADD-QEGIAGGLCYCDSAGVNLQEL 784 (1022)
Q Consensus 711 ~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~--PtsG~I~idg~~~-~~~lr~~IGyV~Q~~~~~~~l 784 (1022)
.+++|+|||++++ +++|+||||||||||||+|+|+. + +.+|+|.++|.+. ....++.+|||+|++..++.+
T Consensus 892 ~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~---~~g~~~G~I~inG~~~~~~~~~~~igyv~Q~d~~~~~l 968 (1470)
T PLN03140 892 RLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRK---TGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQV 968 (1470)
T ss_pred CceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCC---CCCcccceEEECCccCChHHhhhheEEEccccccCCCC
Confidence 4579999999999 99999999999999999999987 6 3789999998766 445577899999965568889
Q ss_pred cccccchHHHHhcccc-------c---hHHHHHHHH-HhcCCccccCCCc-----CCch-HHHHHHHHH---------hh
Q 001709 785 TMEAARFKDEMWMGIR-------D---LSRKTDLIV-LVHNLSHKIPRYN-----YSSA-SGQQQPALS---------LL 838 (1022)
Q Consensus 785 TV~~~~~~ENI~~g~~-------~---~~~~v~~~L-~v~gL~~~~~r~~-----~~LS-GqrQRvaIA---------LL 838 (1022)
|| +|||.|... . ..+++++++ .+ ||.+..++.+ ..|| |||||++|| ||
T Consensus 969 TV-----~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~l-gL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~ 1042 (1470)
T PLN03140 969 TV-----RESLIYSAFLRLPKEVSKEEKMMFVDEVMELV-ELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIF 1042 (1470)
T ss_pred cH-----HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHC-CChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEE
Confidence 99 999987531 1 224578888 77 9998888876 5899 999999999 99
Q ss_pred hccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCCc--ccccCccccccc
Q 001709 839 LNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCPY--VMPGAVSASLSW 902 (1022)
Q Consensus 839 LDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~~--V~~~~~~a~~l~ 902 (1022)
|||||++ ||...+..++..+.+ +.....+++++.|-+. +...+|..+++.
T Consensus 1043 LDEPTsg-------------LD~~~a~~v~~~L~~-l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~ 1094 (1470)
T PLN03140 1043 MDEPTSG-------------LDARAAAIVMRTVRN-TVDTGRTVVCTIHQPSIDIFEAFDELLLMK 1094 (1470)
T ss_pred EeCCCCC-------------CCHHHHHHHHHHHHH-HHHCCCEEEEEeCCCCHHHHHhCCEEEEEc
Confidence 9999997 777777777766654 4444456666665553 466777777775
No 352
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.85 E-value=3.2e-21 Score=230.85 Aligned_cols=170 Identities=16% Similarity=0.197 Sum_probs=123.4
Q ss_pred cccccCceeEEEEecCCCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccchhhhcCc
Q 001709 694 FIRPEGLSDVFIFCTSDFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADDQEGIAGG 770 (1022)
Q Consensus 694 ~i~~~~l~~~~~~~~~~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~~~~lr~~ 770 (1022)
.+.+++++. .+ +++++|+||||+|. +++|+||||||||||||+|+|++ +|++|+|.++.. ..
T Consensus 312 ~l~~~~l~~---~y--~~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~---~p~~G~i~~~~~-------~~ 376 (638)
T PRK10636 312 LLKMEKVSA---GY--GDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGEL---APVSGEIGLAKG-------IK 376 (638)
T ss_pred eEEEEeeEE---Ee--CCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCC---CCCCCeEEECCC-------EE
Confidence 456555553 32 45679999999998 99999999999999999999999 999999998631 36
Q ss_pred eEEEcCCCCC--CccccccccchHHHHhc-cccchHHHHHHHH-HhcCCc-cccCCCcCCch-HHHHHHHHH--------
Q 001709 771 LCYCDSAGVN--LQELTMEAARFKDEMWM-GIRDLSRKTDLIV-LVHNLS-HKIPRYNYSSA-SGQQQPALS-------- 836 (1022)
Q Consensus 771 IGyV~Q~~~~--~~~lTV~~~~~~ENI~~-g~~~~~~~v~~~L-~v~gL~-~~~~r~~~~LS-GqrQRvaIA-------- 836 (1022)
|||++|+... .+..|+ .+++.. .......++..+| .+ ++. +..++++.+|| ||||||+||
T Consensus 377 igy~~Q~~~~~l~~~~~~-----~~~~~~~~~~~~~~~~~~~L~~~-~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~ 450 (638)
T PRK10636 377 LGYFAQHQLEFLRADESP-----LQHLARLAPQELEQKLRDYLGGF-GFQGDKVTEETRRFSGGEKARLVLALIVWQRPN 450 (638)
T ss_pred EEEecCcchhhCCccchH-----HHHHHHhCchhhHHHHHHHHHHc-CCChhHhcCchhhCCHHHHHHHHHHHHHhcCCC
Confidence 8999994322 345677 777642 2112345678888 87 986 47899999999 999999999
Q ss_pred -hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCCcc-cccCcccccc
Q 001709 837 -LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCPYV-MPGAVSASLS 901 (1022)
Q Consensus 837 -LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~~V-~~~~~~a~~l 901 (1022)
|||||||++ +|...+..+...+. .+ .+++++++|.... ...++..+++
T Consensus 451 lLlLDEPt~~-------------LD~~~~~~l~~~L~-~~---~gtvi~vSHd~~~~~~~~d~i~~l 500 (638)
T PRK10636 451 LLLLDEPTNH-------------LDLDMRQALTEALI-DF---EGALVVVSHDRHLLRSTTDDLYLV 500 (638)
T ss_pred EEEEcCCCCC-------------CCHHHHHHHHHHHH-Hc---CCeEEEEeCCHHHHHHhCCEEEEE
Confidence 999999996 66666666665543 23 3566666543332 2234444444
No 353
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.85 E-value=2.2e-21 Score=216.35 Aligned_cols=127 Identities=19% Similarity=0.178 Sum_probs=108.1
Q ss_pred CCCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc-------hhhhcCceEEEcCCC
Q 001709 709 SDFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD-------QEGIAGGLCYCDSAG 778 (1022)
Q Consensus 709 ~~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~-------~~~lr~~IGyV~Q~~ 778 (1022)
.+...|+++|||+++ .+||||.||||||||-++|.+|+ +.+|+|.++|.++ ..-+|+++-+|||++
T Consensus 297 ~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~----~s~G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDP 372 (534)
T COG4172 297 VDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLI----PSQGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDP 372 (534)
T ss_pred chheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhc----CcCceEEECCccccccChhhhhhhhhhceEEEeCC
Confidence 344679999999999 99999999999999999999999 5559999998765 234688999999965
Q ss_pred CC--CccccccccchHHHHhcccc---------chHHHHHHHH-HhcCCc-cccCCCcCCch-HHHHHHHHH--------
Q 001709 779 VN--LQELTMEAARFKDEMWMGIR---------DLSRKTDLIV-LVHNLS-HKIPRYNYSSA-SGQQQPALS-------- 836 (1022)
Q Consensus 779 ~~--~~~lTV~~~~~~ENI~~g~~---------~~~~~v~~~L-~v~gL~-~~~~r~~~~LS-GqrQRvaIA-------- 836 (1022)
.. -|.||| .+-|.-|+. +..+++.++| .+ ||+ .-.+|||+++| |||||+|||
T Consensus 373 ygSLsPRmtV-----~qII~EGL~vh~~~ls~~eR~~rv~~aL~EV-GLDp~~r~RYPhEFSGGQRQRIAIARAliLkP~ 446 (534)
T COG4172 373 YGSLSPRMTV-----GQIIEEGLRVHEPKLSAAERDQRVIEALEEV-GLDPATRNRYPHEFSGGQRQRIAIARALILKPE 446 (534)
T ss_pred CCCCCcccCH-----HHHhhhhhhhcCCCCCHHHHHHHHHHHHHHc-CCChhHhhcCCcccCcchhhHHHHHHHHhcCCc
Confidence 44 588999 777776664 1456788888 99 997 46899999999 999999999
Q ss_pred -hhhccccCC
Q 001709 837 -LLLNEAKSL 845 (1022)
Q Consensus 837 -LLLDEPTSa 845 (1022)
++||||||+
T Consensus 447 ~i~LDEPTSA 456 (534)
T COG4172 447 LILLDEPTSA 456 (534)
T ss_pred EEEecCCchH
Confidence 899999997
No 354
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.85 E-value=5.6e-21 Score=222.67 Aligned_cols=156 Identities=15% Similarity=0.187 Sum_probs=116.2
Q ss_pred ceeEEEEecCC-CeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccchhhhcCceEEEc
Q 001709 700 LSDVFIFCTSD-FTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADDQEGIAGGLCYCD 775 (1022)
Q Consensus 700 l~~~~~~~~~~-~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~~~~lr~~IGyV~ 775 (1022)
++++++.+..+ .+++|+||||+|+ +++|+|||||||||||++|+|++ +|++|+|.+++.+. .++
T Consensus 24 lknL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl---~P~sGeI~I~G~~~------~i~--- 91 (549)
T PRK13545 24 LKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVT---MPNKGTVDIKGSAA------LIA--- 91 (549)
T ss_pred EEEEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCC---CCCceEEEECCEee------eEE---
Confidence 44444444322 2579999999998 99999999999999999999999 99999999997531 122
Q ss_pred CCCCCCccccccccchHHHHhcccc----c---hHHHHHHHH-HhcCCccccCCCcCCch-HHHHHHHHH---------h
Q 001709 776 SAGVNLQELTMEAARFKDEMWMGIR----D---LSRKTDLIV-LVHNLSHKIPRYNYSSA-SGQQQPALS---------L 837 (1022)
Q Consensus 776 Q~~~~~~~lTV~~~~~~ENI~~g~~----~---~~~~v~~~L-~v~gL~~~~~r~~~~LS-GqrQRvaIA---------L 837 (1022)
+....++.+|+ +||+.+... . ..++++.++ .+ +|.+..++++.+|| |||||++|| |
T Consensus 92 ~~~~l~~~lTV-----~EnL~l~~~~~~~~~~e~~e~i~elLe~l-gL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LL 165 (549)
T PRK13545 92 ISSGLNGQLTG-----IENIELKGLMMGLTKEKIKEIIPEIIEFA-DIGKFIYQPVKTYSSGMKSRLGFAISVHINPDIL 165 (549)
T ss_pred eccccCCCCcH-----HHHHHhhhhhcCCCHHHHHHHHHHHHHHc-CChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEE
Confidence 21223566899 999976421 1 234566777 66 99999999999999 999999999 9
Q ss_pred hhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEec
Q 001709 838 LLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINS 887 (1022)
Q Consensus 838 LLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~ 887 (1022)
||||||++ +|...+..+...+. .+.....++++++|
T Consensus 166 LLDEPTsg-------------LD~~sr~~LlelL~-el~~~G~TIIIVSH 201 (549)
T PRK13545 166 VIDEALSV-------------GDQTFTKKCLDKMN-EFKEQGKTIFFISH 201 (549)
T ss_pred EEECCccc-------------CCHHHHHHHHHHHH-HHHhCCCEEEEEEC
Confidence 99999997 67666666665553 34444445666653
No 355
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.85 E-value=3.3e-21 Score=207.64 Aligned_cols=159 Identities=16% Similarity=0.180 Sum_probs=113.9
Q ss_pred ccccCceeEEEEecC-C---CeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccchhhh
Q 001709 695 IRPEGLSDVFIFCTS-D---FTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADDQEGI 767 (1022)
Q Consensus 695 i~~~~l~~~~~~~~~-~---~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~~~~l 767 (1022)
++++++++.|-.... + ...|++||||+|+ +++|||.||||||||-|+|+||+ +|++|+|+++|.++ ..+
T Consensus 5 l~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~---~pt~G~i~f~g~~i-~~~ 80 (268)
T COG4608 5 LEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLE---EPTSGEILFEGKDI-TKL 80 (268)
T ss_pred EEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCc---CCCCceEEEcCcch-hhc
Confidence 455667764432210 1 2479999999999 99999999999999999999999 99999999998764 111
Q ss_pred cCceEEEcCCCCCCccccccccchHHHHhccccchHHHHHHHH-HhcCCc-cccCCCcCCch-HHHHHHHHH--------
Q 001709 768 AGGLCYCDSAGVNLQELTMEAARFKDEMWMGIRDLSRKTDLIV-LVHNLS-HKIPRYNYSSA-SGQQQPALS-------- 836 (1022)
Q Consensus 768 r~~IGyV~Q~~~~~~~lTV~~~~~~ENI~~g~~~~~~~v~~~L-~v~gL~-~~~~r~~~~LS-GqrQRvaIA-------- 836 (1022)
. . ....+++.++| .| |+. ++++++|++|| ||+||++||
T Consensus 81 ~-----------------~-------------~~~~~~v~elL~~V-gl~~~~~~ryPhelSGGQrQRi~IARALal~P~ 129 (268)
T COG4608 81 S-----------------K-------------EERRERVLELLEKV-GLPEEFLYRYPHELSGGQRQRIGIARALALNPK 129 (268)
T ss_pred c-----------------h-------------hHHHHHHHHHHHHh-CCCHHHhhcCCcccCchhhhhHHHHHHHhhCCc
Confidence 1 1 11346788899 88 986 48999999999 999999999
Q ss_pred -hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCCcccccCcccccccCCCCC
Q 001709 837 -LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCPYVMPGAVSASLSWGASGG 907 (1022)
Q Consensus 837 -LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~~V~~~~~~a~~l~~~~~~ 907 (1022)
+++|||+|+ +|...|..++..+.+.-.+..-+.+++. |+..-+-+.++|+.+
T Consensus 130 liV~DEpvSa-------------LDvSiqaqIlnLL~dlq~~~~lt~lFIs------HDL~vv~~isdri~V 182 (268)
T COG4608 130 LIVADEPVSA-------------LDVSVQAQILNLLKDLQEELGLTYLFIS------HDLSVVRYISDRIAV 182 (268)
T ss_pred EEEecCchhh-------------cchhHHHHHHHHHHHHHHHhCCeEEEEE------EEHHhhhhhcccEEE
Confidence 999999997 4444455544444333233233444443 555555556666654
No 356
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.84 E-value=5.3e-21 Score=245.24 Aligned_cols=174 Identities=13% Similarity=0.114 Sum_probs=130.4
Q ss_pred CeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCC-CCCCCceEEEEccccc---hhhhcCceEEEcCCCCCCcc
Q 001709 711 FTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGK-LVRTINSGNLDAEADD---QEGIAGGLCYCDSAGVNLQE 783 (1022)
Q Consensus 711 ~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~-~~~PtsG~I~idg~~~---~~~lr~~IGyV~Q~~~~~~~ 783 (1022)
.+++|+|||+.++ +++|+||||||||||||+|+|+.. ..+|++|+|.+||.+. ....++.++||+|++..++.
T Consensus 73 ~~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~ 152 (1394)
T TIGR00956 73 TFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPH 152 (1394)
T ss_pred cceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCC
Confidence 4579999999999 999999999999999999999851 0147899999998765 22346679999996656899
Q ss_pred ccccccchHHHHhcccc-----------ch---HHH-HHHHH-HhcCCccccCCC-----cCCch-HHHHHHHHH-----
Q 001709 784 LTMEAARFKDEMWMGIR-----------DL---SRK-TDLIV-LVHNLSHKIPRY-----NYSSA-SGQQQPALS----- 836 (1022)
Q Consensus 784 lTV~~~~~~ENI~~g~~-----------~~---~~~-v~~~L-~v~gL~~~~~r~-----~~~LS-GqrQRvaIA----- 836 (1022)
+|| +||+.|+.. .. .++ ++.++ .+ ||.+..+++ +..|| ||||||+||
T Consensus 153 lTV-----~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-gL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~ 226 (1394)
T TIGR00956 153 LTV-----GETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATY-GLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLG 226 (1394)
T ss_pred CCH-----HHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHc-CcccccCceeCCCcCCCCCcccchHHHHHHHHHh
Confidence 999 999988532 11 122 35567 77 998877654 56799 999999999
Q ss_pred ----hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecC--CcccccCcccccccC
Q 001709 837 ----LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSC--PYVMPGAVSASLSWG 903 (1022)
Q Consensus 837 ----LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~--~~V~~~~~~a~~l~~ 903 (1022)
|||||||++ ||...+..++..+.+..+....+++++.|- +.+.+.+|..+++.+
T Consensus 227 ~p~vlllDEPTsg-------------LD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~ 286 (1394)
T TIGR00956 227 GAKIQCWDNATRG-------------LDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYE 286 (1394)
T ss_pred CCCEEEEeCCCCC-------------cCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeC
Confidence 999999997 777777777766644433334455555433 356666777776654
No 357
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.84 E-value=1.1e-20 Score=189.54 Aligned_cols=121 Identities=17% Similarity=0.185 Sum_probs=92.7
Q ss_pred eeEEEEecCCCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc-h----hhhcCceE
Q 001709 701 SDVFIFCTSDFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD-Q----EGIAGGLC 772 (1022)
Q Consensus 701 ~~~~~~~~~~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~-~----~~lr~~IG 772 (1022)
+++.+.| ++.++|+++||+++ +++|+||||||||||+|+|+|++ +|++|+|.+++.++ . ...++.++
T Consensus 4 ~~l~~~~--~~~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~---~~~~G~v~~~g~~~~~~~~~~~~~~~i~ 78 (163)
T cd03216 4 RGITKRF--GGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLY---KPDSGEILVDGKEVSFASPRDARRAGIA 78 (163)
T ss_pred EEEEEEE--CCeEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCC---CCCCeEEEECCEECCcCCHHHHHhcCeE
Confidence 3444444 34579999999999 99999999999999999999999 99999999997554 1 12344566
Q ss_pred EEcCCCCCCccccccccchHHHHhccccchHHHHHHHHHhcCCccccCCCcCCch-HHHHHHHHH---------hhhccc
Q 001709 773 YCDSAGVNLQELTMEAARFKDEMWMGIRDLSRKTDLIVLVHNLSHKIPRYNYSSA-SGQQQPALS---------LLLNEA 842 (1022)
Q Consensus 773 yV~Q~~~~~~~lTV~~~~~~ENI~~g~~~~~~~v~~~L~v~gL~~~~~r~~~~LS-GqrQRvaIA---------LLLDEP 842 (1022)
|+|| || |||||++|| ||||||
T Consensus 79 ~~~q-------------------------------------------------LS~G~~qrl~laral~~~p~illlDEP 109 (163)
T cd03216 79 MVYQ-------------------------------------------------LSVGERQMVEIARALARNARLLILDEP 109 (163)
T ss_pred EEEe-------------------------------------------------cCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 6665 99 999999999 999999
Q ss_pred cCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCC
Q 001709 843 KSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCP 889 (1022)
Q Consensus 843 TSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~ 889 (1022)
|++ +|...+..+...+. .+.+...++++++|..
T Consensus 110 ~~~-------------LD~~~~~~l~~~l~-~~~~~~~tiii~sh~~ 142 (163)
T cd03216 110 TAA-------------LTPAEVERLFKVIR-RLRAQGVAVIFISHRL 142 (163)
T ss_pred CcC-------------CCHHHHHHHHHHHH-HHHHCCCEEEEEeCCH
Confidence 996 77777777666554 4444444566665443
No 358
>PRK13409 putative ATPase RIL; Provisional
Probab=99.84 E-value=3.3e-21 Score=228.97 Aligned_cols=148 Identities=14% Similarity=0.063 Sum_probs=114.8
Q ss_pred eeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEE-----------Eccccc---hhhh---cCce
Q 001709 712 TTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNL-----------DAEADD---QEGI---AGGL 771 (1022)
Q Consensus 712 ~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~-----------idg~~~---~~~l---r~~I 771 (1022)
..+|++|+ .++ +++|+||||||||||||+|+|++ +|+.|+|. ++|.++ ...+ +.++
T Consensus 87 ~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l---~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~ 162 (590)
T PRK13409 87 GFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGEL---IPNLGDYEEEPSWDEVLKRFRGTELQNYFKKLYNGEIKV 162 (590)
T ss_pred ceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCc---cCCCccccCCCcHHHHHHHhCChHHHHHHHHHhccCcce
Confidence 46999999 787 99999999999999999999999 99999997 777665 1111 2346
Q ss_pred EEEcCCCCCCc---cccccccchHHHHhccccchHHHHHHHH-HhcCCccccCCCcCCch-HHHHHHHHH---------h
Q 001709 772 CYCDSAGVNLQ---ELTMEAARFKDEMWMGIRDLSRKTDLIV-LVHNLSHKIPRYNYSSA-SGQQQPALS---------L 837 (1022)
Q Consensus 772 GyV~Q~~~~~~---~lTV~~~~~~ENI~~g~~~~~~~v~~~L-~v~gL~~~~~r~~~~LS-GqrQRvaIA---------L 837 (1022)
++++|....++ ..|| .||+.+. +..+++++++ .+ +|.+..++.+.+|| |||||++|| |
T Consensus 163 ~~~~q~~~~~p~~~~~tv-----~e~l~~~--~~~~~~~~~l~~l-~l~~~~~~~~~~LSgGe~qrv~ia~al~~~p~ll 234 (590)
T PRK13409 163 VHKPQYVDLIPKVFKGKV-----RELLKKV--DERGKLDEVVERL-GLENILDRDISELSGGELQRVAIAAALLRDADFY 234 (590)
T ss_pred eecccchhhhhhhhcchH-----HHHHHhh--hHHHHHHHHHHHc-CCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 66676211133 3488 9998742 2446788888 87 99999999999999 999999999 9
Q ss_pred hhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEe
Q 001709 838 LLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVIN 886 (1022)
Q Consensus 838 LLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~ 886 (1022)
||||||++ ||...+..+...+.+ +.+ ..++++++
T Consensus 235 lLDEPts~-------------LD~~~~~~l~~~i~~-l~~-g~tvIivs 268 (590)
T PRK13409 235 FFDEPTSY-------------LDIRQRLNVARLIRE-LAE-GKYVLVVE 268 (590)
T ss_pred EEECCCCC-------------CCHHHHHHHHHHHHH-HHC-CCEEEEEe
Confidence 99999997 777777777765544 444 55666665
No 359
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.84 E-value=9.6e-21 Score=225.82 Aligned_cols=169 Identities=15% Similarity=0.179 Sum_probs=138.6
Q ss_pred CeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCC---CceEEEEccccc-hhhhcCceEEEcCCCCCCcc
Q 001709 711 FTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRT---INSGNLDAEADD-QEGIAGGLCYCDSAGVNLQE 783 (1022)
Q Consensus 711 ~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~P---tsG~I~idg~~~-~~~lr~~IGyV~Q~~~~~~~ 783 (1022)
.+++|++||..++ +.||+|||||||||||++|+|.. .. .+|+|++||... .+..++..|||.|++..++.
T Consensus 42 ~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~---~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~ 118 (613)
T KOG0061|consen 42 TKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRL---NGGLKLSGEILLNGRPRDSRSFRKISGYVQQDDVLLPT 118 (613)
T ss_pred cceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccc---cCCCcceEEEEECCccCchhhhhheeEEEccccccccc
Confidence 3789999999999 99999999999999999999988 53 789999999665 67788999999997777999
Q ss_pred ccccccchHHHHhcccc----------chHHHHHHHH-HhcCCccccCCCcC-----Cch-HHHHHHHHH---------h
Q 001709 784 LTMEAARFKDEMWMGIR----------DLSRKTDLIV-LVHNLSHKIPRYNY-----SSA-SGQQQPALS---------L 837 (1022)
Q Consensus 784 lTV~~~~~~ENI~~g~~----------~~~~~v~~~L-~v~gL~~~~~r~~~-----~LS-GqrQRvaIA---------L 837 (1022)
+|| +|++.|.+. ..++++++++ .+ ||.+-.|..++ .+| |||+||+|| |
T Consensus 119 LTV-----~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~L-gL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~iL 192 (613)
T KOG0061|consen 119 LTV-----RETLRFSALLRLPSSLSKEEKRERVEEVISEL-GLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDPSIL 192 (613)
T ss_pred ccH-----HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHc-CChhhccceecCCCCCccccchhhHHHHHHHHHcCCCEE
Confidence 999 999988654 1467899999 88 99988888886 599 999999999 9
Q ss_pred hhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEE---ecCCcccccCcccccccC
Q 001709 838 LLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVI---NSCPYVMPGAVSASLSWG 903 (1022)
Q Consensus 838 LLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv---~~~~~V~~~~~~a~~l~~ 903 (1022)
+||||||+ +|.+....++..+ +.++.. ++++|+ .-...+.+.+|..++++.
T Consensus 193 flDEPTSG-------------LDS~sA~~vv~~L-k~lA~~-grtVi~tIHQPss~lf~lFD~l~lLs~ 246 (613)
T KOG0061|consen 193 FLDEPTSG-------------LDSFSALQVVQLL-KRLARS-GRTVICTIHQPSSELFELFDKLLLLSE 246 (613)
T ss_pred EecCCCCC-------------cchhhHHHHHHHH-HHHHhC-CCEEEEEEeCCcHHHHHHHhHhhhhcC
Confidence 99999997 7777766666655 445555 666665 233456667777777763
No 360
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.84 E-value=1.1e-20 Score=226.11 Aligned_cols=145 Identities=12% Similarity=0.117 Sum_probs=104.7
Q ss_pred CCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccchhhhcCceEEEcCCCCCCccccc
Q 001709 710 DFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADDQEGIAGGLCYCDSAGVNLQELTM 786 (1022)
Q Consensus 710 ~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~~~~lr~~IGyV~Q~~~~~~~lTV 786 (1022)
+++++|+||||+|. +++|+||||||||||||+|+|++ +|++|+|.+++.. .|||++|....+. .|+
T Consensus 12 g~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~---~pd~G~I~~~~~~-------~i~~~~q~~~~~~-~~~ 80 (638)
T PRK10636 12 GVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEI---SADGGSYTFPGNW-------QLAWVNQETPALP-QPA 80 (638)
T ss_pred CCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCC---CCCCceEEecCCC-------EEEEEecCCCCCC-CCH
Confidence 45789999999999 99999999999999999999999 9999999998632 2666666321111 222
Q ss_pred cccchHHHH------------------------hc----------cccchHHHHHHHH-HhcCCc-cccCCCcCCch-HH
Q 001709 787 EAARFKDEM------------------------WM----------GIRDLSRKTDLIV-LVHNLS-HKIPRYNYSSA-SG 829 (1022)
Q Consensus 787 ~~~~~~ENI------------------------~~----------g~~~~~~~v~~~L-~v~gL~-~~~~r~~~~LS-Gq 829 (1022)
.+++ .+ +......++..++ .+ |+. +..++++.+|| ||
T Consensus 81 -----~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l-gl~~~~~~~~~~~LSgGe 154 (638)
T PRK10636 81 -----LEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGL-GFSNEQLERPVSDFSGGW 154 (638)
T ss_pred -----HHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhC-CCCchhhcCchhhcCHHH
Confidence 1111 00 0011345678888 77 996 57899999999 99
Q ss_pred HHHHHHH---------hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecC
Q 001709 830 QQQPALS---------LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSC 888 (1022)
Q Consensus 830 rQRvaIA---------LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~ 888 (1022)
||||+|| |||||||++ +|...+..+...+ . ....++++++|.
T Consensus 155 rqRv~LA~aL~~~P~lLLLDEPtn~-------------LD~~~~~~L~~~L-~---~~~~tviivsHd 205 (638)
T PRK10636 155 RMRLNLAQALICRSDLLLLDEPTNH-------------LDLDAVIWLEKWL-K---SYQGTLILISHD 205 (638)
T ss_pred HHHHHHHHHHccCCCEEEEcCCCCc-------------CCHHHHHHHHHHH-H---hCCCeEEEEeCC
Confidence 9999999 999999996 6666555544433 2 224566777643
No 361
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.84 E-value=2.1e-20 Score=241.74 Aligned_cols=173 Identities=15% Similarity=0.207 Sum_probs=128.9
Q ss_pred ceeEEEEecCCCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccchhhhcCceEEEcC
Q 001709 700 LSDVFIFCTSDFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADDQEGIAGGLCYCDS 776 (1022)
Q Consensus 700 l~~~~~~~~~~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~~~~lr~~IGyV~Q 776 (1022)
++++.+.+..+..++|+||||+++ +++|+||||||||||+++|+|++ +|++|+|.+++ .|+||+|
T Consensus 639 ~~~~~~~~~~~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~---~~~~G~i~~~g---------~i~yv~Q 706 (1522)
T TIGR00957 639 VHNATFTWARDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEM---DKVEGHVHMKG---------SVAYVPQ 706 (1522)
T ss_pred EEEeEEEcCCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC---ccCCcEEEECC---------EEEEEcC
Confidence 555555554334579999999998 99999999999999999999999 99999999875 4899999
Q ss_pred CCCCCccccccccchHHHHhccccchHHHHHHHH-------Hh----cCCccccCCCcCCch-HHHHHHHHH--------
Q 001709 777 AGVNLQELTMEAARFKDEMWMGIRDLSRKTDLIV-------LV----HNLSHKIPRYNYSSA-SGQQQPALS-------- 836 (1022)
Q Consensus 777 ~~~~~~~lTV~~~~~~ENI~~g~~~~~~~v~~~L-------~v----~gL~~~~~r~~~~LS-GqrQRvaIA-------- 836 (1022)
++.++..|+ +|||.||.....++.++++ .+ .|.....++++.+|| |||||++||
T Consensus 707 -~~~l~~~Ti-----~eNI~~g~~~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~ 780 (1522)
T TIGR00957 707 -QAWIQNDSL-----RENILFGKALNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNAD 780 (1522)
T ss_pred -CccccCCcH-----HHHhhcCCccCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 455556899 9999998652222222222 11 133445678899999 999999999
Q ss_pred -hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHH-hCCCeEEEEecCCcccccCcccccccC
Q 001709 837 -LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQ-ASPSTTEVINSCPYVMPGAVSASLSWG 903 (1022)
Q Consensus 837 -LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~-~t~~~~vVv~~~~~V~~~~~~a~~l~~ 903 (1022)
+|||||||+ +|++....+...+..... ....++++++|-...+..+|..+.+.+
T Consensus 781 illLDEp~sa-------------LD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~~D~ii~l~~ 836 (1522)
T TIGR00957 781 IYLFDDPLSA-------------VDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVIIVMSG 836 (1522)
T ss_pred EEEEcCCccc-------------cCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhhCCEEEEecC
Confidence 999999997 788887777766653211 123567777666555566777666654
No 362
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.84 E-value=3.3e-21 Score=201.55 Aligned_cols=184 Identities=16% Similarity=0.106 Sum_probs=135.4
Q ss_pred ccCceeEEEEecCCCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc----hhhhcC
Q 001709 697 PEGLSDVFIFCTSDFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD----QEGIAG 769 (1022)
Q Consensus 697 ~~~l~~~~~~~~~~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~----~~~lr~ 769 (1022)
+.+++++++-.....++||+++||+|. +|.+||.||||||||+++|+|-+ .|++|+|+||+.++ ......
T Consensus 4 ~~~~~~~f~~g~~~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l---~~t~G~I~Idg~dVtk~~~~~RA~ 80 (263)
T COG1101 4 LSNATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDL---KPTSGQILIDGVDVTKKSVAKRAN 80 (263)
T ss_pred cccceeeecCCChhHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCcc---ccCCceEEECceecccCCHHHHhh
Confidence 345555554444556789999999998 99999999999999999999999 99999999998776 333445
Q ss_pred ceEEEcCCCCC--CccccccccchHHHHhcccc-----------c--hHHHHHHHH--HhcCCccccCCCcCCch-HHHH
Q 001709 770 GLCYCDSAGVN--LQELTMEAARFKDEMWMGIR-----------D--LSRKTDLIV--LVHNLSHKIPRYNYSSA-SGQQ 831 (1022)
Q Consensus 770 ~IGyV~Q~~~~--~~~lTV~~~~~~ENI~~g~~-----------~--~~~~v~~~L--~v~gL~~~~~r~~~~LS-GqrQ 831 (1022)
.++-|||++.. ++.+|+ .||+.+... + ..+...+-+ .-.||+..++.+..-|| ||||
T Consensus 81 ~larVfQdp~~gt~~~lTi-----eENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQ 155 (263)
T COG1101 81 LLARVFQDPLAGTAPELTI-----EENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQ 155 (263)
T ss_pred HHHHHhcchhhCCcccccH-----HHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHH
Confidence 68899995544 899999 999987432 1 112222333 22267889999999999 9999
Q ss_pred HHHHH---------hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCCcccccCccccccc
Q 001709 832 QPALS---------LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCPYVMPGAVSASLSW 902 (1022)
Q Consensus 832 RvaIA---------LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~~V~~~~~~a~~l~ 902 (1022)
-++|+ |||||=|++ +|+..-..++..--+...+..-++++|+ |....|+-..
T Consensus 156 alsL~MAtl~~pkiLLLDEHTAA-------------LDPkta~~vm~lT~kiV~~~klTtlMVT------Hnm~~Al~yG 216 (263)
T COG1101 156 ALSLLMATLHPPKILLLDEHTAA-------------LDPKTAEFVMELTAKIVEEHKLTTLMVT------HNMEDALDYG 216 (263)
T ss_pred HHHHHHHhcCCCcEEEecchhhc-------------CCcchHHHHHHHHHHHHHhcCCceEEEe------ccHHHHHhhC
Confidence 99998 999999998 4444434433333333444444666665 7777888777
Q ss_pred CCCCC
Q 001709 903 GASGG 907 (1022)
Q Consensus 903 ~~~~~ 907 (1022)
+|...
T Consensus 217 ~RlIm 221 (263)
T COG1101 217 NRLIM 221 (263)
T ss_pred CeEEE
Confidence 77765
No 363
>PLN03140 ABC transporter G family member; Provisional
Probab=99.83 E-value=7.4e-21 Score=244.13 Aligned_cols=171 Identities=15% Similarity=0.086 Sum_probs=130.6
Q ss_pred CeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCC---ceEEEEccccc-hhhhcCceEEEcCCCCCCcc
Q 001709 711 FTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTI---NSGNLDAEADD-QEGIAGGLCYCDSAGVNLQE 783 (1022)
Q Consensus 711 ~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~Pt---sG~I~idg~~~-~~~lr~~IGyV~Q~~~~~~~ 783 (1022)
.+++|+|||+.++ +++|+||||||||||||+|+|++ +|+ +|+|.+||.+. ....++.++||+|++..++.
T Consensus 177 ~~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l---~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~ 253 (1470)
T PLN03140 177 KLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKL---DPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGV 253 (1470)
T ss_pred cceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCC---CCCCcceeEEEECCEechhhcccceeEEecccccCCCc
Confidence 4679999999999 99999999999999999999999 898 99999998776 22346789999996556899
Q ss_pred ccccccchHHHHhcccc------------c--hH---------------------------HHHHHHH-HhcCCcccc--
Q 001709 784 LTMEAARFKDEMWMGIR------------D--LS---------------------------RKTDLIV-LVHNLSHKI-- 819 (1022)
Q Consensus 784 lTV~~~~~~ENI~~g~~------------~--~~---------------------------~~v~~~L-~v~gL~~~~-- 819 (1022)
+|| +||+.|+.. . .+ ..++.++ .+ ||.+..
T Consensus 254 lTV-----~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~l-GL~~~~~t 327 (1470)
T PLN03140 254 MTV-----KETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKIL-GLDICKDT 327 (1470)
T ss_pred CcH-----HHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHc-CCccccCc
Confidence 999 999988532 0 00 0235677 66 998754
Q ss_pred ---CCCcCCch-HHHHHHHHH---------hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEe
Q 001709 820 ---PRYNYSSA-SGQQQPALS---------LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVIN 886 (1022)
Q Consensus 820 ---~r~~~~LS-GqrQRvaIA---------LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~ 886 (1022)
++.+..|| ||||||+|| |||||||++ ||..+...++..+.+.......++++..
T Consensus 328 ~vg~~~~rglSGGerkRVsia~aL~~~p~vlllDEPTsG-------------LDs~t~~~i~~~Lr~la~~~g~Tviis~ 394 (1470)
T PLN03140 328 IVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTG-------------LDSSTTYQIVKCLQQIVHLTEATVLMSL 394 (1470)
T ss_pred eeCCccccCCCcccceeeeehhhhcCCCcEEEEeCCCcC-------------ccHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 56778999 999999999 999999997 7777777777666544333333444444
Q ss_pred cC--CcccccCcccccccC
Q 001709 887 SC--PYVMPGAVSASLSWG 903 (1022)
Q Consensus 887 ~~--~~V~~~~~~a~~l~~ 903 (1022)
|- +.+...+|..+++.+
T Consensus 395 Hqp~~~i~~lfD~vilL~~ 413 (1470)
T PLN03140 395 LQPAPETFDLFDDIILLSE 413 (1470)
T ss_pred cCCCHHHHHHhheEEEeeC
Confidence 32 356666666666654
No 364
>PLN03073 ABC transporter F family; Provisional
Probab=99.83 E-value=2.9e-20 Score=225.08 Aligned_cols=152 Identities=15% Similarity=0.229 Sum_probs=111.7
Q ss_pred ceeEEEEecCCCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccchhhhcCceEEEcC
Q 001709 700 LSDVFIFCTSDFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADDQEGIAGGLCYCDS 776 (1022)
Q Consensus 700 l~~~~~~~~~~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~~~~lr~~IGyV~Q 776 (1022)
++++.+.|. +...+|+||||+|+ +++|+||||||||||||+|+|++ +|++|+|.+++ +.+|||++|
T Consensus 511 ~~~ls~~y~-~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll---~p~~G~I~~~~-------~~~igyv~Q 579 (718)
T PLN03073 511 FSDASFGYP-GGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGEL---QPSSGTVFRSA-------KVRMAVFSQ 579 (718)
T ss_pred EEeeEEEeC-CCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC---CCCCceEEECC-------ceeEEEEec
Confidence 344334432 33569999999998 99999999999999999999999 99999998864 246999999
Q ss_pred CCCCCccccccccchHHHHhcc----c-cchHHHHHHHH-HhcCCc-cccCCCcCCch-HHHHHHHHH---------hhh
Q 001709 777 AGVNLQELTMEAARFKDEMWMG----I-RDLSRKTDLIV-LVHNLS-HKIPRYNYSSA-SGQQQPALS---------LLL 839 (1022)
Q Consensus 777 ~~~~~~~lTV~~~~~~ENI~~g----~-~~~~~~v~~~L-~v~gL~-~~~~r~~~~LS-GqrQRvaIA---------LLL 839 (1022)
+ . +..+++ .+|+.+. . ....+++..++ .+ ||. +..++++.+|| |||||++|| |||
T Consensus 580 ~-~-~~~l~~-----~~~~~~~~~~~~~~~~~~~i~~~L~~~-gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLL 651 (718)
T PLN03073 580 H-H-VDGLDL-----SSNPLLYMMRCFPGVPEQKLRAHLGSF-GVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLL 651 (718)
T ss_pred c-c-cccCCc-----chhHHHHHHHhcCCCCHHHHHHHHHHC-CCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEEEE
Confidence 4 3 233455 4443211 1 11346678888 87 997 47899999999 999999999 999
Q ss_pred ccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEec
Q 001709 840 NEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINS 887 (1022)
Q Consensus 840 DEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~ 887 (1022)
||||++ +|...+..++..+. .+ .+++++++|
T Consensus 652 DEPT~~-------------LD~~s~~~l~~~L~-~~---~gtvIivSH 682 (718)
T PLN03073 652 DEPSNH-------------LDLDAVEALIQGLV-LF---QGGVLMVSH 682 (718)
T ss_pred cCCCCC-------------CCHHHHHHHHHHHH-Hc---CCEEEEEEC
Confidence 999996 66666655544332 22 356666653
No 365
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.82 E-value=7e-20 Score=219.07 Aligned_cols=150 Identities=15% Similarity=0.106 Sum_probs=102.4
Q ss_pred CCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccchhhhcCceEEEcCCCCCCccccc
Q 001709 710 DFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADDQEGIAGGLCYCDSAGVNLQELTM 786 (1022)
Q Consensus 710 ~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~~~~lr~~IGyV~Q~~~~~~~lTV 786 (1022)
+..++|+||||+|. +++|+||||||||||||+|+|++ +|++|+|.+++.. .++|++|........++
T Consensus 14 ~~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~---~p~~G~I~~~~~~-------~~~~l~q~~~~~~~~~v 83 (635)
T PRK11147 14 SDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEV---LLDDGRIIYEQDL-------IVARLQQDPPRNVEGTV 83 (635)
T ss_pred CCceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCC---CCCCeEEEeCCCC-------EEEEeccCCCCCCCCCH
Confidence 34679999999998 99999999999999999999999 9999999998521 14555552111111122
Q ss_pred cc----------------c---------chHHHHhccc-----------cchHHHHHHHH-HhcCCccccCCCcCCch-H
Q 001709 787 EA----------------A---------RFKDEMWMGI-----------RDLSRKTDLIV-LVHNLSHKIPRYNYSSA-S 828 (1022)
Q Consensus 787 ~~----------------~---------~~~ENI~~g~-----------~~~~~~v~~~L-~v~gL~~~~~r~~~~LS-G 828 (1022)
.. . ...+|+.+.. .....++..++ .+ |+. .++++.+|| |
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-gl~--~~~~~~~LSgG 160 (635)
T PRK11147 84 YDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQL-GLD--PDAALSSLSGG 160 (635)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhC-CCC--CCCchhhcCHH
Confidence 00 0 0012222110 01345677888 77 886 389999999 9
Q ss_pred HHHHHHHH---------hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCC
Q 001709 829 GQQQPALS---------LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCP 889 (1022)
Q Consensus 829 qrQRvaIA---------LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~ 889 (1022)
|||||+|| |||||||++ +|...+..+...+. .+ ..++++++|..
T Consensus 161 ekqRv~LAraL~~~P~lLLLDEPt~~-------------LD~~~~~~L~~~L~-~~---~~tvlivsHd~ 213 (635)
T PRK11147 161 WLRKAALGRALVSNPDVLLLDEPTNH-------------LDIETIEWLEGFLK-TF---QGSIIFISHDR 213 (635)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCc-------------cCHHHHHHHHHHHH-hC---CCEEEEEeCCH
Confidence 99999999 999999996 66666665554442 22 35667776443
No 366
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.82 E-value=2.9e-20 Score=197.65 Aligned_cols=163 Identities=20% Similarity=0.199 Sum_probs=118.4
Q ss_pred CCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccchhhhcCceEEEcCCCCCCccccc
Q 001709 710 DFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADDQEGIAGGLCYCDSAGVNLQELTM 786 (1022)
Q Consensus 710 ~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~~~~lr~~IGyV~Q~~~~~~~lTV 786 (1022)
....||+||||+++ .+||||+||||||||||+|+|.+ +||+|+|.++|+-. .-+.-+.|+- |++|.
T Consensus 38 ~~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~---~Pt~G~v~v~G~v~-~li~lg~Gf~-------pelTG 106 (249)
T COG1134 38 AEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIY---KPTSGKVKVTGKVA-PLIELGAGFD-------PELTG 106 (249)
T ss_pred ceEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCcc---CCCCceEEEcceEe-hhhhcccCCC-------cccch
Confidence 35679999999999 99999999999999999999999 99999999997432 1111223332 55899
Q ss_pred cccchHHHHhcccc-------chHHHHHHHHHhcCCccccCCCcCCch-HHHHHHHHH---------hhhccccCCChhH
Q 001709 787 EAARFKDEMWMGIR-------DLSRKTDLIVLVHNLSHKIPRYNYSSA-SGQQQPALS---------LLLNEAKSLGIPW 849 (1022)
Q Consensus 787 ~~~~~~ENI~~g~~-------~~~~~v~~~L~v~gL~~~~~r~~~~LS-GqrQRvaIA---------LLLDEPTSad~~~ 849 (1022)
+|||.+-.. +.++++++++.+.+|.++++.++.++| ||+-|+++| |||||..+.+++
T Consensus 107 -----reNi~l~~~~~G~~~~ei~~~~~eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~- 180 (249)
T COG1134 107 -----RENIYLRGLILGLTRKEIDEKVDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDA- 180 (249)
T ss_pred -----HHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCH-
Confidence 999976322 367788899955599999999999999 999999999 999999996433
Q ss_pred HHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEE-ecCCcccccCccccccc
Q 001709 850 VLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVI-NSCPYVMPGAVSASLSW 902 (1022)
Q Consensus 850 v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv-~~~~~V~~~~~~a~~l~ 902 (1022)
.=++.....+ +++.+...+++++ |+...|-.-++.++++.
T Consensus 181 ------------~F~~K~~~rl-~e~~~~~~tiv~VSHd~~~I~~~Cd~~i~l~ 221 (249)
T COG1134 181 ------------AFQEKCLERL-NELVEKNKTIVLVSHDLGAIKQYCDRAIWLE 221 (249)
T ss_pred ------------HHHHHHHHHH-HHHHHcCCEEEEEECCHHHHHHhcCeeEEEe
Confidence 2233333333 3333333566666 33444444455555443
No 367
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.82 E-value=5.5e-20 Score=237.40 Aligned_cols=160 Identities=14% Similarity=0.190 Sum_probs=119.6
Q ss_pred eeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccchhhhcCceEEEcCCCCCCccccccc
Q 001709 712 TTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADDQEGIAGGLCYCDSAGVNLQELTMEA 788 (1022)
Q Consensus 712 ~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~~~~lr~~IGyV~Q~~~~~~~lTV~~ 788 (1022)
+++|+||||+|+ +++|+|||||||||||++|+|++ +|++|+|.++| .|+||+|++..++ .||
T Consensus 439 ~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~---~~~~G~i~~~g---------~iayv~Q~~~l~~-~Ti-- 503 (1490)
T TIGR01271 439 TPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGEL---EPSEGKIKHSG---------RISFSPQTSWIMP-GTI-- 503 (1490)
T ss_pred CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCC---CCCCceEEECC---------EEEEEeCCCccCC-ccH--
Confidence 469999999998 99999999999999999999999 99999999876 4899999443355 799
Q ss_pred cchHHHHhccccchHHHHHHH---------H--HhcCCccccCCCcCCch-HHHHHHHHH---------hhhccccCCCh
Q 001709 789 ARFKDEMWMGIRDLSRKTDLI---------V--LVHNLSHKIPRYNYSSA-SGQQQPALS---------LLLNEAKSLGI 847 (1022)
Q Consensus 789 ~~~~ENI~~g~~~~~~~v~~~---------L--~v~gL~~~~~r~~~~LS-GqrQRvaIA---------LLLDEPTSad~ 847 (1022)
+|||.||.....++.+++ + ...|.....++++.+|| |||||++|| +|||||||+
T Consensus 504 ---~eNI~~g~~~~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~sa-- 578 (1490)
T TIGR01271 504 ---KDNIIFGLSYDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTH-- 578 (1490)
T ss_pred ---HHHHHhccccchHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCccc--
Confidence 999999864221222222 2 11122334677889999 999999999 999999997
Q ss_pred hHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCCcccccCcccccccC
Q 001709 848 PWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCPYVMPGAVSASLSWG 903 (1022)
Q Consensus 848 ~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~~V~~~~~~a~~l~~ 903 (1022)
+|++.+..+...++..+.. ..++++++|-...+..+|..+.+.+
T Consensus 579 -----------LD~~~~~~i~~~~l~~~~~-~~tvilvtH~~~~~~~ad~ii~l~~ 622 (1490)
T TIGR01271 579 -----------LDVVTEKEIFESCLCKLMS-NKTRILVTSKLEHLKKADKILLLHE 622 (1490)
T ss_pred -----------CCHHHHHHHHHHHHHHHhc-CCeEEEEeCChHHHHhCCEEEEEEC
Confidence 7888887777654433332 4566666665555555666666543
No 368
>PTZ00243 ABC transporter; Provisional
Probab=99.82 E-value=8.1e-20 Score=236.48 Aligned_cols=162 Identities=15% Similarity=0.168 Sum_probs=121.5
Q ss_pred CCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccchhhhcCceEEEcCCCCCCccccc
Q 001709 710 DFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADDQEGIAGGLCYCDSAGVNLQELTM 786 (1022)
Q Consensus 710 ~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~~~~lr~~IGyV~Q~~~~~~~lTV 786 (1022)
+.+++|+||||+|+ +++|+|||||||||||++|+|++ +|++|+|.++ +.||||+|+ +.++..|+
T Consensus 671 ~~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~---~~~~G~i~~~---------~~i~yv~Q~-~~l~~~Tv 737 (1560)
T PTZ00243 671 EPKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQF---EISEGRVWAE---------RSIAYVPQQ-AWIMNATV 737 (1560)
T ss_pred CCceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCC---CCCCcEEEEC---------CeEEEEeCC-CccCCCcH
Confidence 45679999999998 99999999999999999999999 9999999753 569999994 44445899
Q ss_pred cccchHHHHhccccchHHHHHH---------HH--HhcCCccccCCCcCCch-HHHHHHHHH---------hhhccccCC
Q 001709 787 EAARFKDEMWMGIRDLSRKTDL---------IV--LVHNLSHKIPRYNYSSA-SGQQQPALS---------LLLNEAKSL 845 (1022)
Q Consensus 787 ~~~~~~ENI~~g~~~~~~~v~~---------~L--~v~gL~~~~~r~~~~LS-GqrQRvaIA---------LLLDEPTSa 845 (1022)
+|||.|+.....++.++ .+ ..+|+....++++.+|| |||||++|| |||||||++
T Consensus 738 -----~enI~~~~~~~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~sa 812 (1560)
T PTZ00243 738 -----RGNILFFDEEDAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSA 812 (1560)
T ss_pred -----HHHHHcCChhhHHHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCcccc
Confidence 99999976422222222 22 22366667789999999 999999999 999999997
Q ss_pred ChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCCcccccCcccccccC
Q 001709 846 GIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCPYVMPGAVSASLSWG 903 (1022)
Q Consensus 846 d~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~~V~~~~~~a~~l~~ 903 (1022)
+|.+.+..+...++.... ...++++++|....+..+|..+.+.+
T Consensus 813 -------------LD~~~~~~i~~~~~~~~~-~~~TvIlvTH~~~~~~~ad~ii~l~~ 856 (1560)
T PTZ00243 813 -------------LDAHVGERVVEECFLGAL-AGKTRVLATHQVHVVPRADYVVALGD 856 (1560)
T ss_pred -------------CCHHHHHHHHHHHHHHhh-CCCEEEEEeCCHHHHHhCCEEEEEEC
Confidence 777766666554432222 24567777766555555666655543
No 369
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.81 E-value=1.1e-19 Score=202.96 Aligned_cols=204 Identities=13% Similarity=0.138 Sum_probs=147.4
Q ss_pred cccccCceeEEEEecCCCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCC------ceEEEEccccc-
Q 001709 694 FIRPEGLSDVFIFCTSDFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTI------NSGNLDAEADD- 763 (1022)
Q Consensus 694 ~i~~~~l~~~~~~~~~~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~Pt------sG~I~idg~~~- 763 (1022)
.+.+++|+- .|....+...++++|||+|+ .+||||.||||||-..+.|+||+ |. +|+|.++|.++
T Consensus 6 lL~v~nLsV-~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LL----p~~~~~~~sg~i~f~G~dll 80 (534)
T COG4172 6 LLSIRNLSV-AFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLL----PSPAAAHPSGSILFDGEDLL 80 (534)
T ss_pred ceeeeccEE-EEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhc----CCCcccCccceeEEcChhhh
Confidence 355566663 22323345789999999999 99999999999999999999999 44 68999998775
Q ss_pred ---h---hhhc-CceEEEcCCCCC--CccccccccchHHHHhcccc----chHHHHHHHH-HhcCCcc---ccCCCcCCc
Q 001709 764 ---Q---EGIA-GGLCYCDSAGVN--LQELTMEAARFKDEMWMGIR----DLSRKTDLIV-LVHNLSH---KIPRYNYSS 826 (1022)
Q Consensus 764 ---~---~~lr-~~IGyV~Q~~~~--~~~lTV~~~~~~ENI~~g~~----~~~~~v~~~L-~v~gL~~---~~~r~~~~L 826 (1022)
. ..+| .+|+||||++.. -|-.|+ ++|+.|-|.+... ..++++.++| .| |+.+ .++.||++|
T Consensus 81 ~~se~~lr~iRG~~I~MIFQEPMtSLNPl~tI-g~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~V-gI~~p~~rl~~yPHeL 158 (534)
T COG4172 81 AASERQLRGVRGNKIGMIFQEPMTSLNPLHTI-GKQLAEVLRLHRGLSRAAARARALELLELV-GIPEPEKRLDAYPHEL 158 (534)
T ss_pred cCCHHHHhhhcccceEEEecccccccCcHhHH-HHHHHHHHHHHhcccHHHHHHHHHHHHHHc-CCCchhhhhhhCCccc
Confidence 1 2233 369999995544 355677 6777777766433 2567788888 88 9964 689999999
Q ss_pred h-HHHHHHHHH---------hhhccccCC-ChhHHHHHhhhhcccHHHHH---HHHHHHHHHHHhCCCeEEEEecCCccc
Q 001709 827 A-SGQQQPALS---------LLLNEAKSL-GIPWVLAITNKFSVSAHQQR---AAIDAVMQAYQASPSTTEVINSCPYVM 892 (1022)
Q Consensus 827 S-GqrQRvaIA---------LLLDEPTSa-d~~~v~~I~~~~~ld~~~~~---~~i~~ll~~~~~t~~~~vVv~~~~~V~ 892 (1022)
| ||||||.|| ||.||||.| |.-.+.+|++.++-...+.. .++.+=+...+.-.|.+.|+.+++.|-
T Consensus 159 SGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~ivE 238 (534)
T COG4172 159 SGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIVE 238 (534)
T ss_pred CcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccEEee
Confidence 9 999999999 999999986 55555666666531101100 011233344455568889999999998
Q ss_pred ccCcccccccCC
Q 001709 893 PGAVSASLSWGA 904 (1022)
Q Consensus 893 ~~~~~a~~l~~~ 904 (1022)
++..+.+|..-.
T Consensus 239 ~~~t~~lF~~Pq 250 (534)
T COG4172 239 TGTTETLFAAPQ 250 (534)
T ss_pred cCcHHHHhhCCC
Confidence 888888876543
No 370
>cd00741 Lipase Lipase. Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation", the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=99.80 E-value=1.6e-19 Score=178.06 Aligned_cols=122 Identities=29% Similarity=0.307 Sum_probs=94.7
Q ss_pred HhHHHHHhcChhHHHHH----HHhcCCCeEEEeccChhHHHHHHHHHHHHHHHhhhcccccCCCcceEEEEeCCCccccH
Q 001709 209 RGFLARAKGIPALELYR----LAQKKKRKLVLCGHSLGGAVAALATLAILRVVAASSSLKENDKVQVKCITFSQPPVGNA 284 (1022)
Q Consensus 209 ~GFl~a~~~I~~~~l~~----l~~~p~ykLVvTGHSLGGALAtLAAl~LLr~~~~~~~~~~~~~~~V~vyTFGqPRVGN~ 284 (1022)
+||+.+|..+....... +.++|+++|++||||||||+|.|+++.+... .....+.|||||+|++||.
T Consensus 1 ~Gf~~~~~~~~~~i~~~~~~~~~~~p~~~i~v~GHSlGg~lA~l~a~~~~~~---------~~~~~~~~~~fg~p~~~~~ 71 (153)
T cd00741 1 KGFYKAARSLANLVLPLLKSALAQYPDYKIHVTGHSLGGALAGLAGLDLRGR---------GLGRLVRVYTFGPPRVGNA 71 (153)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHCCCCeEEEEEcCHHHHHHHHHHHHHHhc---------cCCCceEEEEeCCCcccch
Confidence 48999998876654332 4457999999999999999999999777431 1234679999999999999
Q ss_pred HHHH--HHHhcCCCceeEEEeeCCCcccccCC-CCccccCCCceeeecCCcccccccccc
Q 001709 285 ALRD--YVNRKGWQHYFKSYCIPEDLVPRILS-PAYFHHYNNVQPLLVSAEIRTNGSFVS 341 (1022)
Q Consensus 285 aFA~--~v~~~~~~~~f~RVVh~~DiVPrLP~-~~~f~H~~~Evw~~~~~~~~~~~~~~~ 341 (1022)
.|+. +.+. ....++||+|.+|+||++|+ ...|.|.+.|+|++...........+.
T Consensus 72 ~~~~~~~~~~--~~~~~~~i~~~~D~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (153)
T cd00741 72 AFAEDRLDPS--DALFVDRIVNDNDIVPRLPPGGEGYPHGGAEFYINGGKSQPGCCKNVL 129 (153)
T ss_pred HHHHHhhhcc--CCccEEEEEECCCccCCCCCCcCCCeecceEEEECCCCCCCcccccce
Confidence 9995 3332 34556799999999999997 678999999999987766555444333
No 371
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.80 E-value=2.1e-19 Score=184.25 Aligned_cols=142 Identities=20% Similarity=0.212 Sum_probs=106.7
Q ss_pred ccccCceeEEEEec----CCCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc----
Q 001709 695 IRPEGLSDVFIFCT----SDFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD---- 763 (1022)
Q Consensus 695 i~~~~l~~~~~~~~----~~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~---- 763 (1022)
+++++|++.|.+.. .....|++.|||+++ .+||||.||||||||.|+|+|++ +|++|+|++|+...
T Consensus 5 LeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi---~PTsG~il~n~~~L~~~D 81 (267)
T COG4167 5 LEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMI---EPTSGEILINDHPLHFGD 81 (267)
T ss_pred hhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhccc---CCCCceEEECCccccccc
Confidence 34556665443221 123459999999999 99999999999999999999999 99999999998665
Q ss_pred hhhhcCceEEEcCCCCC-C-ccccccccchHHHHhcccc--------chHHHHHHHH-HhcCC-ccccCCCcCCch-HHH
Q 001709 764 QEGIAGGLCYCDSAGVN-L-QELTMEAARFKDEMWMGIR--------DLSRKTDLIV-LVHNL-SHKIPRYNYSSA-SGQ 830 (1022)
Q Consensus 764 ~~~lr~~IGyV~Q~~~~-~-~~lTV~~~~~~ENI~~g~~--------~~~~~v~~~L-~v~gL-~~~~~r~~~~LS-Gqr 830 (1022)
.....+.|-|+||++.. | |.+.+ -.-+..+++ ...+++-+-| +| || .+.++-+++.|| |||
T Consensus 82 y~~R~k~IRMiFQDpnts~NPRl~i-----GqiLd~PL~l~T~~~~~~R~~~i~~TL~~V-GL~Pdhan~~~~~la~~QK 155 (267)
T COG4167 82 YSFRSKRIRMIFQDPNTSLNPRLRI-----GQILDFPLRLNTDLEPEQRRKQIFETLRMV-GLLPDHANYYPHMLAPGQK 155 (267)
T ss_pred hHhhhhheeeeecCCccccChhhhh-----hhHhcchhhhcccCChHHHHHHHHHHHHHh-ccCccccccchhhcCchhH
Confidence 22334679999994433 3 54555 333343333 1456677778 88 86 688999999999 999
Q ss_pred HHHHHH---------hhhccccCC
Q 001709 831 QQPALS---------LLLNEAKSL 845 (1022)
Q Consensus 831 QRvaIA---------LLLDEPTSa 845 (1022)
|||||| +|.||+.++
T Consensus 156 QRVaLARALIL~P~iIIaDeAl~~ 179 (267)
T COG4167 156 QRVALARALILRPKIIIADEALAS 179 (267)
T ss_pred HHHHHHHHHhcCCcEEEehhhhhh
Confidence 999999 777888875
No 372
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.80 E-value=4.2e-20 Score=198.58 Aligned_cols=168 Identities=16% Similarity=0.182 Sum_probs=117.8
Q ss_pred eeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc---hhhhcCceEEEcCCCCCCc-cc
Q 001709 712 TTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD---QEGIAGGLCYCDSAGVNLQ-EL 784 (1022)
Q Consensus 712 ~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~---~~~lr~~IGyV~Q~~~~~~-~l 784 (1022)
..|++||||+|+ +++++|||||||||+||+|+|++ .|++|.|.++|.+. .++.-++++||+-....+- .+
T Consensus 37 ~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll---~p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdl 113 (325)
T COG4586 37 IEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLL---LPTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDL 113 (325)
T ss_pred hhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCcc---ccCCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeec
Confidence 359999999999 99999999999999999999999 99999999999765 3445567888875332222 23
Q ss_pred cccccchHHHHhcc-----ccc--hHHHHHHHHHhcCCccccCCCcCCch-HHHHHHHHH---------hhhccccCCCh
Q 001709 785 TMEAARFKDEMWMG-----IRD--LSRKTDLIVLVHNLSHKIPRYNYSSA-SGQQQPALS---------LLLNEAKSLGI 847 (1022)
Q Consensus 785 TV~~~~~~ENI~~g-----~~~--~~~~v~~~L~v~gL~~~~~r~~~~LS-GqrQRvaIA---------LLLDEPTSad~ 847 (1022)
.+ .|.+... ..+ -+++.+++..+.+|+.++..+++.|| |||.|+.|| |+|||||-+
T Consensus 114 p~-----~ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvg-- 186 (325)
T COG4586 114 PA-----LDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVG-- 186 (325)
T ss_pred hh-----hhhHHHHHHHHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccC--
Confidence 33 3333221 111 35677777733399999999999999 999999999 999999985
Q ss_pred hHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCCcccccCcccccccCCCC
Q 001709 848 PWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCPYVMPGAVSASLSWGASG 906 (1022)
Q Consensus 848 ~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~~V~~~~~~a~~l~~~~~ 906 (1022)
+|...|.. +...++++.+...++++++ .|.++...-|.+|+.
T Consensus 187 -----------LDV~aq~~-ir~Flke~n~~~~aTVllT-----TH~~~di~~lc~rv~ 228 (325)
T COG4586 187 -----------LDVNAQAN-IREFLKEYNEERQATVLLT-----THIFDDIATLCDRVL 228 (325)
T ss_pred -----------cchhHHHH-HHHHHHHHHHhhCceEEEE-----ecchhhHHHhhhheE
Confidence 33333333 2333455555556666653 344444444555443
No 373
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.80 E-value=2.4e-19 Score=225.24 Aligned_cols=186 Identities=18% Similarity=0.144 Sum_probs=138.9
Q ss_pred CCCCcccccCceeEEEEecCCCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc---
Q 001709 690 DDEKFIRPEGLSDVFIFCTSDFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD--- 763 (1022)
Q Consensus 690 ~~~~~i~~~~l~~~~~~~~~~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~--- 763 (1022)
+....|. ++++...|..+...||+||||+|+ .|||||..|||||||+.+|-++. .|.+|+|.|||.|+
T Consensus 1134 P~~G~I~---f~~~~~RYrp~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~---e~~~G~I~IDgvdI~~i 1207 (1381)
T KOG0054|consen 1134 PSKGEIE---FEDLSLRYRPNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLV---EPAEGEILIDGVDISKI 1207 (1381)
T ss_pred CCCCeEE---EEEeEEEeCCCCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhc---CccCCeEEEcCeecccc
Confidence 3445566 555557777777789999999999 99999999999999999999999 99999999998665
Q ss_pred -hhhhcCceEEEcCCCCCCccccccccchHHHHhccccchHHHHHHH---------H--HhcCCccccCCCcCCch-HHH
Q 001709 764 -QEGIAGGLCYCDSAGVNLQELTMEAARFKDEMWMGIRDLSRKTDLI---------V--LVHNLSHKIPRYNYSSA-SGQ 830 (1022)
Q Consensus 764 -~~~lr~~IGyV~Q~~~~~~~lTV~~~~~~ENI~~g~~~~~~~v~~~---------L--~v~gL~~~~~r~~~~LS-Gqr 830 (1022)
..++|++++++|| ++.++..|+ |.|+.=..+..++.+=++ + +..||+....+.+.++| |||
T Consensus 1208 gL~dLRsrlsIIPQ-dPvLFsGTv-----R~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQR 1281 (1381)
T KOG0054|consen 1208 GLHDLRSRLSIIPQ-DPVLFSGTV-----RFNLDPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQR 1281 (1381)
T ss_pred cHHHHHhcCeeeCC-CCceecCcc-----ccccCcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHH
Confidence 7899999999999 566555999 999963222122222222 2 22356667777888999 999
Q ss_pred HHHHHH---------hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEE-ecCCcccccCccccc
Q 001709 831 QQPALS---------LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVI-NSCPYVMPGAVSASL 900 (1022)
Q Consensus 831 QRvaIA---------LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv-~~~~~V~~~~~~a~~ 900 (1022)
|.++|| |+|||+||+ +|..+-..+...+.+..+. .|++.| |+.+.|+ +.|.++.
T Consensus 1282 QLlCLARALLr~skILvLDEATAs-------------VD~~TD~lIQ~tIR~~F~d--cTVltIAHRl~TVm-d~DrVlV 1345 (1381)
T KOG0054|consen 1282 QLLCLARALLRKSKILVLDEATAS-------------VDPETDALIQKTIREEFKD--CTVLTIAHRLNTVM-DSDRVLV 1345 (1381)
T ss_pred HHHHHHHHHhccCCEEEEeccccc-------------CChHHHHHHHHHHHHHhcC--CeEEEEeeccchhh-hcCeEEE
Confidence 999999 999999997 7777666666666555542 355555 5555555 4455555
Q ss_pred ccC
Q 001709 901 SWG 903 (1022)
Q Consensus 901 l~~ 903 (1022)
+..
T Consensus 1346 ld~ 1348 (1381)
T KOG0054|consen 1346 LDA 1348 (1381)
T ss_pred eeC
Confidence 444
No 374
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.80 E-value=3.9e-19 Score=182.25 Aligned_cols=125 Identities=17% Similarity=0.127 Sum_probs=94.3
Q ss_pred CCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccchhhhcCceEEEcCCCCCCccccc
Q 001709 710 DFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADDQEGIAGGLCYCDSAGVNLQELTM 786 (1022)
Q Consensus 710 ~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~~~~lr~~IGyV~Q~~~~~~~lTV 786 (1022)
+++++++++ |+++ +++|+||||||||||+|+|+|++ +|++|+|.+++. .++|++|+ .
T Consensus 11 ~~~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~---~p~~G~i~~~g~--------~i~~~~q~--------~ 70 (177)
T cd03222 11 GVFFLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQL---IPNGDNDEWDGI--------TPVYKPQY--------I 70 (177)
T ss_pred CCEEEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCC---CCCCcEEEECCE--------EEEEEccc--------C
Confidence 457789885 8998 99999999999999999999999 999999999873 37888881 1
Q ss_pred cccchHHHHhccccchHHHHHHHHHhcCCccccCCCcCCch-HHHHHHHHH---------hhhccccCCChhHHHHHhhh
Q 001709 787 EAARFKDEMWMGIRDLSRKTDLIVLVHNLSHKIPRYNYSSA-SGQQQPALS---------LLLNEAKSLGIPWVLAITNK 856 (1022)
Q Consensus 787 ~~~~~~ENI~~g~~~~~~~v~~~L~v~gL~~~~~r~~~~LS-GqrQRvaIA---------LLLDEPTSad~~~v~~I~~~ 856 (1022)
. || |||||++|| +||||||++
T Consensus 71 -----~---------------------------------LSgGq~qrv~laral~~~p~lllLDEPts~----------- 101 (177)
T cd03222 71 -----D---------------------------------LSGGELQRVAIAAALLRNATFYLFDEPSAY----------- 101 (177)
T ss_pred -----C---------------------------------CCHHHHHHHHHHHHHhcCCCEEEEECCccc-----------
Confidence 0 99 999999999 999999996
Q ss_pred hcccHHHHHHHHHHHHHHHHhCCCeEEEEecCCcc-cccCcccccccCCC
Q 001709 857 FSVSAHQQRAAIDAVMQAYQASPSTTEVINSCPYV-MPGAVSASLSWGAS 905 (1022)
Q Consensus 857 ~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~~V-~~~~~~a~~l~~~~ 905 (1022)
+|...+..+...+.+..+....++++++|.... ...++..+.+.++.
T Consensus 102 --LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~~~ 149 (177)
T cd03222 102 --LDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLSDRIHVFEGEP 149 (177)
T ss_pred --CCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHhCCEEEEEcCCC
Confidence 777777777666644433222466666544433 33455555555543
No 375
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.79 E-value=7.8e-19 Score=179.90 Aligned_cols=138 Identities=14% Similarity=0.068 Sum_probs=99.5
Q ss_pred CeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccchhhhcCceEEEcCCCCCCcccccc
Q 001709 711 FTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADDQEGIAGGLCYCDSAGVNLQELTME 787 (1022)
Q Consensus 711 ~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~~~~lr~~IGyV~Q~~~~~~~lTV~ 787 (1022)
.+++|+||||+++ +++|+||||||||||||+|. +++|++.+++... ...+..++|++|
T Consensus 7 ~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il-------~~~G~v~~~~~~~-~~~~~~~~~~~q----------- 67 (176)
T cd03238 7 NVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGL-------YASGKARLISFLP-KFSRNKLIFIDQ----------- 67 (176)
T ss_pred eeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHh-------hcCCcEEECCccc-ccccccEEEEhH-----------
Confidence 3579999999999 99999999999999999883 3689999886422 111334666655
Q ss_pred ccchHHHHhccccchHHHHHHHH-HhcCCcc-ccCCCcCCch-HHHHHHHHH-----------hhhccccCCChhHHHHH
Q 001709 788 AARFKDEMWMGIRDLSRKTDLIV-LVHNLSH-KIPRYNYSSA-SGQQQPALS-----------LLLNEAKSLGIPWVLAI 853 (1022)
Q Consensus 788 ~~~~~ENI~~g~~~~~~~v~~~L-~v~gL~~-~~~r~~~~LS-GqrQRvaIA-----------LLLDEPTSad~~~v~~I 853 (1022)
.+++ .+ +|.. ..++++.+|| |||||++|| |||||||++
T Consensus 68 -------------------~~~l~~~-~L~~~~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~-------- 119 (176)
T cd03238 68 -------------------LQFLIDV-GLGYLTLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTG-------- 119 (176)
T ss_pred -------------------HHHHHHc-CCCccccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCccc--------
Confidence 1244 55 7765 4789999999 999999999 999999996
Q ss_pred hhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCCcccccCcccccc
Q 001709 854 TNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCPYVMPGAVSASLS 901 (1022)
Q Consensus 854 ~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~~V~~~~~~a~~l 901 (1022)
+|...+..+...+.+. .+...++++++|.......++..+.+
T Consensus 120 -----LD~~~~~~l~~~l~~~-~~~g~tvIivSH~~~~~~~~d~i~~l 161 (176)
T cd03238 120 -----LHQQDINQLLEVIKGL-IDLGNTVILIEHNLDVLSSADWIIDF 161 (176)
T ss_pred -----CCHHHHHHHHHHHHHH-HhCCCEEEEEeCCHHHHHhCCEEEEE
Confidence 6777777766655444 33455666666544444444444444
No 376
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.79 E-value=7.7e-19 Score=173.27 Aligned_cols=99 Identities=24% Similarity=0.372 Sum_probs=82.5
Q ss_pred eeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccchhhhcCceEEEcCCCCCCccccccc
Q 001709 712 TTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADDQEGIAGGLCYCDSAGVNLQELTMEA 788 (1022)
Q Consensus 712 ~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~~~~lr~~IGyV~Q~~~~~~~lTV~~ 788 (1022)
.++++++||+++ +++|+||||||||||+++|+|++ +|++|+|++++. ..++|++|
T Consensus 13 ~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~~~-------~~i~~~~~------------ 70 (144)
T cd03221 13 KLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGEL---EPDEGIVTWGST-------VKIGYFEQ------------ 70 (144)
T ss_pred ceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCC---CCCceEEEECCe-------EEEEEEcc------------
Confidence 479999999998 99999999999999999999999 999999999872 45777776
Q ss_pred cchHHHHhccccchHHHHHHHHHhcCCccccCCCcCCch-HHHHHHHHH---------hhhccccCCChhHHHHHhhhhc
Q 001709 789 ARFKDEMWMGIRDLSRKTDLIVLVHNLSHKIPRYNYSSA-SGQQQPALS---------LLLNEAKSLGIPWVLAITNKFS 858 (1022)
Q Consensus 789 ~~~~ENI~~g~~~~~~~v~~~L~v~gL~~~~~r~~~~LS-GqrQRvaIA---------LLLDEPTSad~~~v~~I~~~~~ 858 (1022)
|| ||+||++|| +||||||++
T Consensus 71 -------------------------------------lS~G~~~rv~laral~~~p~illlDEP~~~------------- 100 (144)
T cd03221 71 -------------------------------------LSGGEKMRLALAKLLLENPNLLLLDEPTNH------------- 100 (144)
T ss_pred -------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCccC-------------
Confidence 99 999999999 999999996
Q ss_pred ccHHHHHHHHHHHHHHHHhCCCeEEEEe
Q 001709 859 VSAHQQRAAIDAVMQAYQASPSTTEVIN 886 (1022)
Q Consensus 859 ld~~~~~~~i~~ll~~~~~t~~~~vVv~ 886 (1022)
+|...+..+...+.+ + ..++++++
T Consensus 101 LD~~~~~~l~~~l~~-~---~~til~~t 124 (144)
T cd03221 101 LDLESIEALEEALKE-Y---PGTVILVS 124 (144)
T ss_pred CCHHHHHHHHHHHHH-c---CCEEEEEE
Confidence 676666666555432 2 24555555
No 377
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.78 E-value=7.2e-19 Score=206.31 Aligned_cols=151 Identities=20% Similarity=0.233 Sum_probs=114.1
Q ss_pred CCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccchhhhcCceEEEcCCCCCCccccc
Q 001709 710 DFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADDQEGIAGGLCYCDSAGVNLQELTM 786 (1022)
Q Consensus 710 ~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~~~~lr~~IGyV~Q~~~~~~~lTV 786 (1022)
+.+++++++||++. ++||||+||||||||||+|+|.. .|++|+|..... -.|||+.|+.......||
T Consensus 14 g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~---~~~~G~i~~~~~-------~~v~~l~Q~~~~~~~~tv 83 (530)
T COG0488 14 GDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGEL---EPDSGEVTRPKG-------LRVGYLSQEPPLDPEKTV 83 (530)
T ss_pred CCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCC---cCCCCeEeecCC-------ceEEEeCCCCCcCCCccH
Confidence 67899999999998 99999999999999999999999 999999987631 358999995555667799
Q ss_pred cccchHHHHhccccc-------------------------------------hHHHHHHHH-HhcCCccccCCCcCCch-
Q 001709 787 EAARFKDEMWMGIRD-------------------------------------LSRKTDLIV-LVHNLSHKIPRYNYSSA- 827 (1022)
Q Consensus 787 ~~~~~~ENI~~g~~~-------------------------------------~~~~v~~~L-~v~gL~~~~~r~~~~LS- 827 (1022)
.+.+..+... .+.++..++ .+ |+.+. ++...+||
T Consensus 84 -----~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gL-g~~~~-~~~~~~LSG 156 (530)
T COG0488 84 -----LDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGL-GFPDE-DRPVSSLSG 156 (530)
T ss_pred -----HHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcC-CCCcc-cCchhhcCH
Confidence 8888766541 123445555 55 66666 89999999
Q ss_pred HHHHHHHHH---------hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCCccccc
Q 001709 828 SGQQQPALS---------LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCPYVMPG 894 (1022)
Q Consensus 828 GqrQRvaIA---------LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~~V~~~ 894 (1022)
|||.||+|| |||||||+. ||.....-+-. -++..+++++||.|..+-+..
T Consensus 157 G~r~Rv~LA~aL~~~pDlLLLDEPTNH-------------LD~~~i~WLe~----~L~~~~gtviiVSHDR~FLd~ 215 (530)
T COG0488 157 GWRRRVALARALLEEPDLLLLDEPTNH-------------LDLESIEWLED----YLKRYPGTVIVVSHDRYFLDN 215 (530)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCcc-------------cCHHHHHHHHH----HHHhCCCcEEEEeCCHHHHHH
Confidence 999999999 999999995 44333222222 223445678888765555533
No 378
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.78 E-value=3.8e-19 Score=180.67 Aligned_cols=157 Identities=17% Similarity=0.190 Sum_probs=116.9
Q ss_pred ccccCceeEEEEecCCC--eeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEc--c--ccc--
Q 001709 695 IRPEGLSDVFIFCTSDF--TTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDA--E--ADD-- 763 (1022)
Q Consensus 695 i~~~~l~~~~~~~~~~~--~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~id--g--~~~-- 763 (1022)
+.++++++.|.....++ .++|++|||+|+ +|+|=||||+|||||||+|-|-| .|++|+|++. | .|+
T Consensus 5 l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY---~~d~G~I~v~H~g~~vdl~~ 81 (235)
T COG4778 5 LNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANY---LPDEGQILVRHEGEWVDLVT 81 (235)
T ss_pred eeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhcc---CCCCceEEEEeCcchhhhhc
Confidence 45567777776665554 469999999999 99999999999999999999999 9999999987 2 111
Q ss_pred ------hhhhcCceEEEcCCCCCCccccccccchHHHHhc-----ccc--chHHHHHHHH-HhcCCcc-ccCCCcCCch-
Q 001709 764 ------QEGIAGGLCYCDSAGVNLQELTMEAARFKDEMWM-----GIR--DLSRKTDLIV-LVHNLSH-KIPRYNYSSA- 827 (1022)
Q Consensus 764 ------~~~lr~~IGyV~Q~~~~~~~lTV~~~~~~ENI~~-----g~~--~~~~~v~~~L-~v~gL~~-~~~r~~~~LS- 827 (1022)
.+-.++.||||.|.--..|..+. .|-++- |.. ....++..++ ++ ++.+ +-.-.|.++|
T Consensus 82 a~pr~vl~vRr~TiGyVSQFLRviPRV~a-----LdVvaePll~~gv~~~~a~~~a~~Ll~rL-nlperLW~LaPaTFSG 155 (235)
T COG4778 82 AEPREVLEVRRTTIGYVSQFLRVIPRVSA-----LDVVAEPLLARGVPREVARAKAADLLTRL-NLPERLWSLAPATFSG 155 (235)
T ss_pred cChHHHHHHHHhhhHHHHHHHHhccCcch-----HHHHHhHHHHcCCCHHHHHHHHHHHHHHc-CCCHHHhcCCCcccCC
Confidence 22235679999992111554444 333332 222 2456777788 88 8865 4577899999
Q ss_pred HHHHHHHHH---------hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHH
Q 001709 828 SGQQQPALS---------LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQ 873 (1022)
Q Consensus 828 GqrQRvaIA---------LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~ 873 (1022)
|+||||-|| |||||||+. +|+..+...++.+-+
T Consensus 156 GEqQRVNIaRgfivd~pILLLDEPTas-------------LDa~Nr~vVveli~e 197 (235)
T COG4778 156 GEQQRVNIARGFIVDYPILLLDEPTAS-------------LDATNRAVVVELIRE 197 (235)
T ss_pred chheehhhhhhhhccCceEEecCCccc-------------ccccchHHHHHHHHH
Confidence 999999999 999999996 777777777766533
No 379
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=99.78 E-value=3.2e-19 Score=220.60 Aligned_cols=182 Identities=19% Similarity=0.262 Sum_probs=146.8
Q ss_pred CcccccCceeEEEEecCCCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc-----h
Q 001709 693 KFIRPEGLSDVFIFCTSDFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD-----Q 764 (1022)
Q Consensus 693 ~~i~~~~l~~~~~~~~~~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~-----~ 764 (1022)
..+..+++++++ .. +..|++++||.|+ ++|++|+|||||||++|+|.|.. +|++|+++++|.++ .
T Consensus 563 ~~~~~~~L~k~y--~~--~~~Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~---~~t~G~a~i~g~~i~~~~~~ 635 (885)
T KOG0059|consen 563 SALVLNNLSKVY--GG--KDGAVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGET---KPTSGEALIKGHDITVSTDF 635 (885)
T ss_pred ceEEEcceeeee--cc--hhhhhcceEEEecCCceEEEecCCCCCchhhHHHHhCCc---cCCcceEEEecCccccccch
Confidence 445567777644 11 1129999999999 99999999999999999999999 99999999998765 1
Q ss_pred hhhcCceEEEcCCCCCCccccccccchHHHHhcccc-------chHHHHHHHH-HhcCCccccCCCcCCch-HHHHHHHH
Q 001709 765 EGIAGGLCYCDSAGVNLQELTMEAARFKDEMWMGIR-------DLSRKTDLIV-LVHNLSHKIPRYNYSSA-SGQQQPAL 835 (1022)
Q Consensus 765 ~~lr~~IGyV~Q~~~~~~~lTV~~~~~~ENI~~g~~-------~~~~~v~~~L-~v~gL~~~~~r~~~~LS-GqrQRvaI 835 (1022)
...++.|||+||.+..++.+|. +|.+.+..+ +.++.++.++ .+ +|.+.+++..+.+| |+|+|+.+
T Consensus 636 ~~~~~~iGyCPQ~d~l~~~lT~-----rEhL~~~arlrG~~~~di~~~v~~ll~~~-~L~~~~~~~~~~ySgG~kRkLs~ 709 (885)
T KOG0059|consen 636 QQVRKQLGYCPQFDALWEELTG-----REHLEFYARLRGLPRSDIGSAIEKLLRLV-GLGPYANKQVRTYSGGNKRRLSF 709 (885)
T ss_pred hhhhhhcccCCchhhhhhhccH-----HHHHHHHHHHcCCChhHHHHHHHHHHHHc-CChhhhccchhhCCCcchhhHHH
Confidence 2378899999997666899999 999987554 2456688888 88 99999999999999 99999999
Q ss_pred H---------hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCCcccccCcccccccCCCC
Q 001709 836 S---------LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCPYVMPGAVSASLSWGASG 906 (1022)
Q Consensus 836 A---------LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~~V~~~~~~a~~l~~~~~ 906 (1022)
| ++|||||++ +|+..|+.+.+.+.+. ++... .+|++ .|..+|+-.+.+|..
T Consensus 710 aialig~p~vi~LDEPstG-------------mDP~arr~lW~ii~~~-~k~g~-aiiLT-----SHsMeE~EaLCtR~a 769 (885)
T KOG0059|consen 710 AIALIGDPSVILLDEPSTG-------------LDPKARRHLWDIIARL-RKNGK-AIILT-----SHSMEEAEALCTRTA 769 (885)
T ss_pred HHHHhcCCCEEEecCCCCC-------------CCHHHHHHHHHHHHHH-HhcCC-EEEEE-----cCCHHHHHHHhhhhh
Confidence 9 899999997 7777788877766544 33333 55554 588888888888876
Q ss_pred C
Q 001709 907 G 907 (1022)
Q Consensus 907 ~ 907 (1022)
-
T Consensus 770 I 770 (885)
T KOG0059|consen 770 I 770 (885)
T ss_pred e
Confidence 4
No 380
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.77 E-value=8.4e-19 Score=220.44 Aligned_cols=330 Identities=20% Similarity=0.230 Sum_probs=203.8
Q ss_pred cchhHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhcCCCCCcccCcccccCCchHHHHHhccccceeeecccccCcceec
Q 001709 501 KLTSVKSVIAELRERFQSHSMRSYRSRFQRIYDLCMSDGAAIFSGMEQLQQFPHLQQWLGLAVAGTVELGHIVESPVIRA 580 (1022)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 580 (1022)
=+-.++..++-+-.++|...||.=-+|-+.+=++.-+-..=-+.+-|+ |..+.-..+- .-|++.+-..--++.
T Consensus 353 l~~p~n~~~a~~~~~~q~~~m~~~D~Rik~~nEiL~~IkviK~yaWE~----~F~~~I~~~R---~~El~~lrk~~~~~~ 425 (1381)
T KOG0054|consen 353 LLIPLNSFLAKKIAKFQKRLMKRKDERIKLMNEILNGIKVIKLYAWEK----PFLKKIEDLR---QKELKLLRKSAYLSA 425 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhHhhhhHhhHH----HHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 345789999999999999999999999988777655333333333343 1111111111 134444333333332
Q ss_pred ccceeccccCCCCCCCCCcceeeeeecccceeeeeeeeeecCcccccceeccCCCCccCCCCCCchhhhhhhhhccCcCC
Q 001709 581 ATSVVPLGWSGIPGDKNSESLKVDISGFRLHLCSLVHAQVNGNWCSTTVESFPSAPTYSSNIGVQPELQQMRVLVGAPLR 660 (1022)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~t~~e~~p~~p~~~~~~~~~~~lq~mr~~~~~Plk 660 (1022)
.++.+ |... |.-|=+.=|+.|. + ..|+ .-|..--|.+..-| -++..|+.
T Consensus 426 ~~~~~---~~~~-------p~lv~~~tF~~~v--~----~~~~-~lt~~~aF~slalf--------------niLr~pl~ 474 (1381)
T KOG0054|consen 426 LNSFL---NFFS-------PVLVSVVTFVVFV--L----LLGN-LLTASTAFTSLALF--------------NILRFPLF 474 (1381)
T ss_pred HHHHH---HHHH-------HHHHHHHHHHHHh--h----ccCc-cccHhHHHHHHHHH--------------HHHHHHHH
Confidence 22211 1111 1111111111111 0 1111 00000111111111 12233444
Q ss_pred CCCCc----------cccccccCCCcchhhcccCCCCCCCCCCcccccCceeEEEEecC-CCeeEEEeeeEEEe---EEE
Q 001709 661 RPPNL----------SISVFPSIDSETIDCCMEHGSGSADDEKFIRPEGLSDVFIFCTS-DFTTVFKEVHFRTR---RVR 726 (1022)
Q Consensus 661 ~l~~~----------~~~vf~~ld~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~-~~~~aLkdVSL~V~---iVa 726 (1022)
.+|.+ ..|+.+.+..+..+............+..+. +++.++.-.. +..+.|+||||+|+ .+|
T Consensus 475 ~~P~~i~~~vqa~VS~~Ri~~fl~~~e~~~~~~~~~~~~~~~~~i~---i~~~sfsW~~~~~~~tL~dIn~~i~~G~lva 551 (1381)
T KOG0054|consen 475 MLPSVISQLVQAKVSLKRLKEFLLSEELDPDSVERSPDEAGENAIE---IKNGSFSWDSESPEPTLKDINFEIKKGQLVA 551 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcccCccccccCCCCCCCceEE---EeeeeEecCCCCCcccccceeEEecCCCEEE
Confidence 44544 5666665554432222111112223333444 3444444332 34459999999999 999
Q ss_pred EEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccchhhhcCceEEEcCCCCCCccccccccchHHHHhccccchHHHH
Q 001709 727 LLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADDQEGIAGGLCYCDSAGVNLQELTMEAARFKDEMWMGIRDLSRKT 806 (1022)
Q Consensus 727 LlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~~~~lr~~IGyV~Q~~~~~~~lTV~~~~~~ENI~~g~~~~~~~v 806 (1022)
|+|+-||||||||.+|+|-. +..+|.|.++|. ++||+| .+-+++.|| +|||.||..-++++.
T Consensus 552 VvG~vGsGKSSLL~AiLGEm---~~~sG~v~v~gs---------iaYv~Q-~pWI~ngTv-----reNILFG~~~d~~rY 613 (1381)
T KOG0054|consen 552 VVGPVGSGKSSLLSAILGEM---PKLSGSVAVNGS---------VAYVPQ-QPWIQNGTV-----RENILFGSPYDEERY 613 (1381)
T ss_pred EECCCCCCHHHHHHHHhcCc---ccccceEEEcCe---------EEEecc-ccHhhCCcH-----HHhhhcCccccHHHH
Confidence 99999999999999999999 999999998863 899999 555667999 999999988666666
Q ss_pred HHHHHhcCCc-----------cccCCCcCCch-HHHHHHHHH---------hhhccccCCChhHHHHHhhhhcccHHHHH
Q 001709 807 DLIVLVHNLS-----------HKIPRYNYSSA-SGQQQPALS---------LLLNEAKSLGIPWVLAITNKFSVSAHQQR 865 (1022)
Q Consensus 807 ~~~L~v~gL~-----------~~~~r~~~~LS-GqrQRvaIA---------LLLDEPTSad~~~v~~I~~~~~ld~~~~~ 865 (1022)
++++....|. .-+++++-+|| |||||++|| +|||.|+|| +|+|..+
T Consensus 614 ~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLDDplSA-------------VDahvg~ 680 (1381)
T KOG0054|consen 614 DKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLLDDPLSA-------------VDAHVGK 680 (1381)
T ss_pred HHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEEEcCcchh-------------hhHhhhH
Confidence 6666222332 24678888999 999999999 999999997 8999988
Q ss_pred HHHHHHHHHHHhCCCeEEEEecCCcccccCcccccccC
Q 001709 866 AAIDAVMQAYQASPSTTEVINSCPYVMPGAVSASLSWG 903 (1022)
Q Consensus 866 ~~i~~ll~~~~~t~~~~vVv~~~~~V~~~~~~a~~l~~ 903 (1022)
.+.+..+..+- .+.|.++++|.-..++.+|..+.+.+
T Consensus 681 ~if~~ci~~~L-~~KT~ILVTHql~~L~~ad~Iivl~~ 717 (1381)
T KOG0054|consen 681 HIFEECIRGLL-RGKTVILVTHQLQFLPHADQIIVLKD 717 (1381)
T ss_pred HHHHHHHHhhh-cCCEEEEEeCchhhhhhCCEEEEecC
Confidence 88877774443 34688888888888888888888877
No 381
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.77 E-value=1.9e-18 Score=176.05 Aligned_cols=186 Identities=16% Similarity=0.183 Sum_probs=134.5
Q ss_pred CcccccCceeEEEEecCCCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccc-----cc-
Q 001709 693 KFIRPEGLSDVFIFCTSDFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEA-----DD- 763 (1022)
Q Consensus 693 ~~i~~~~l~~~~~~~~~~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~-----~~- 763 (1022)
+.+++.++++.| +.....+||||++. +.+|+|.|||||||||++|++-+ .|+.|+|.+... ++
T Consensus 5 PLL~V~~lsk~Y-----g~~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl---~p~~G~v~Y~~r~~~~~dl~ 76 (258)
T COG4107 5 PLLSVSGLSKLY-----GPGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRL---TPDAGTVTYRMRDGQPRDLY 76 (258)
T ss_pred cceeehhhhhhh-----CCCcCccccceeecCCcEEEEEecCCCcHHhHHHHHhccc---CCCCCeEEEEcCCCCchhHh
Confidence 345666777633 45568999999998 99999999999999999999999 999999999831 21
Q ss_pred -h--h----hhcCceEEEcCCCCC-Cccccccc-cchHHH-Hhcccc---chHHHHHHHH-HhcCCc-cccCCCcCCch-
Q 001709 764 -Q--E----GIAGGLCYCDSAGVN-LQELTMEA-ARFKDE-MWMGIR---DLSRKTDLIV-LVHNLS-HKIPRYNYSSA- 827 (1022)
Q Consensus 764 -~--~----~lr~~IGyV~Q~~~~-~~~lTV~~-~~~~EN-I~~g~~---~~~~~v~~~L-~v~gL~-~~~~r~~~~LS- 827 (1022)
. . -.|..-|+|.||+.- +- ++|.+ .-+-|- ++.|.+ +.+..+..+| .+ .++ +.+|..|.++|
T Consensus 77 ~msEaeRR~L~RTeWG~VhQnP~DGLR-m~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~V-EI~~~RiDD~PrtFSG 154 (258)
T COG4107 77 TMSEAERRRLLRTEWGFVHQNPRDGLR-MQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEV-EIDLDRIDDLPRTFSG 154 (258)
T ss_pred hhchHHHHHHhhhccceeecCccccce-eeeccCCccchhHHhhhhhhhhhHHHHHHHHHHhc-ccCcccccCcccccch
Confidence 1 1 134568999996554 43 33321 011121 233444 2566777888 88 775 67899999999
Q ss_pred HHHHHHHHH---------hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCCcccccCccc
Q 001709 828 SGQQQPALS---------LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCPYVMPGAVSA 898 (1022)
Q Consensus 828 GqrQRvaIA---------LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~~V~~~~~~a 898 (1022)
|||||+.|| .+|||||.+ +|..-|..+++.+.....+..-.++||+ |+..-+
T Consensus 155 GMqQRLQiARnLVt~PrLvfMDEPTGG-------------LDVSVQARLLDllrgLv~~l~la~viVT------HDl~Va 215 (258)
T COG4107 155 GMQQRLQIARNLVTRPRLVFMDEPTGG-------------LDVSVQARLLDLLRGLVRELGLAVVIVT------HDLAVA 215 (258)
T ss_pred HHHHHHHHHHHhccCCceEEecCCCCC-------------cchhhHHHHHHHHHHHHHhcCceEEEEe------chhHHH
Confidence 999999999 899999996 5556667777666666566555666666 777777
Q ss_pred ccccCCCCC
Q 001709 899 SLSWGASGG 907 (1022)
Q Consensus 899 ~~l~~~~~~ 907 (1022)
-++++|--+
T Consensus 216 rLla~rlmv 224 (258)
T COG4107 216 RLLADRLMV 224 (258)
T ss_pred HHhhhccee
Confidence 778887666
No 382
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.77 E-value=3.5e-18 Score=169.24 Aligned_cols=113 Identities=23% Similarity=0.308 Sum_probs=88.9
Q ss_pred CeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc----hhhhcCceEEEcCCCCCCcc
Q 001709 711 FTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD----QEGIAGGLCYCDSAGVNLQE 783 (1022)
Q Consensus 711 ~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~----~~~lr~~IGyV~Q~~~~~~~ 783 (1022)
+..+++++||+++ +++|+|+||||||||+++|+|++ +|++|+|++++.+. ....++.++|++|
T Consensus 11 ~~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~---~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~q------- 80 (157)
T cd00267 11 GRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLL---KPTSGEILIDGKDIAKLPLEELRRRIGYVPQ------- 80 (157)
T ss_pred CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC---CCCccEEEECCEEcccCCHHHHHhceEEEee-------
Confidence 3479999999998 99999999999999999999999 99999999997543 2233455666665
Q ss_pred ccccccchHHHHhccccchHHHHHHHHHhcCCccccCCCcCCch-HHHHHHHHH---------hhhccccCCChhHHHHH
Q 001709 784 LTMEAARFKDEMWMGIRDLSRKTDLIVLVHNLSHKIPRYNYSSA-SGQQQPALS---------LLLNEAKSLGIPWVLAI 853 (1022)
Q Consensus 784 lTV~~~~~~ENI~~g~~~~~~~v~~~L~v~gL~~~~~r~~~~LS-GqrQRvaIA---------LLLDEPTSad~~~v~~I 853 (1022)
|| ||+||++|| +||||||++
T Consensus 81 ------------------------------------------lS~G~~~r~~l~~~l~~~~~i~ilDEp~~~-------- 110 (157)
T cd00267 81 ------------------------------------------LSGGQRQRVALARALLLNPDLLLLDEPTSG-------- 110 (157)
T ss_pred ------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCCcC--------
Confidence 99 999999999 999999996
Q ss_pred hhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCC
Q 001709 854 TNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCP 889 (1022)
Q Consensus 854 ~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~ 889 (1022)
+|...+..+...+.+... ...+++++.|..
T Consensus 111 -----lD~~~~~~l~~~l~~~~~-~~~tii~~sh~~ 140 (157)
T cd00267 111 -----LDPASRERLLELLRELAE-EGRTVIIVTHDP 140 (157)
T ss_pred -----CCHHHHHHHHHHHHHHHH-CCCEEEEEeCCH
Confidence 677777776666654433 334566665333
No 383
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.76 E-value=4.7e-18 Score=199.46 Aligned_cols=167 Identities=18% Similarity=0.218 Sum_probs=128.0
Q ss_pred CCCcccccCceeEEEEecCCCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccchhhh
Q 001709 691 DEKFIRPEGLSDVFIFCTSDFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADDQEGI 767 (1022)
Q Consensus 691 ~~~~i~~~~l~~~~~~~~~~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~~~~l 767 (1022)
.+..+.+++++. .+. +.+++++++||.|. ++||+||||+|||||||+|+|.. .|.+|+|.+.-
T Consensus 318 g~~vl~~~~~~~---~y~-~~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~---~~~~G~v~~g~------- 383 (530)
T COG0488 318 GKLVLEFENVSK---GYD-GGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGEL---GPLSGTVKVGE------- 383 (530)
T ss_pred CCeeEEEecccc---ccC-CCceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhc---ccCCceEEeCC-------
Confidence 344566555553 322 33689999999998 99999999999999999999999 89999998642
Q ss_pred cCceEEEcCCCCC-CccccccccchHHHHhccccc-hHHHHHHHH-HhcCCc-cccCCCcCCch-HHHHHHHHH------
Q 001709 768 AGGLCYCDSAGVN-LQELTMEAARFKDEMWMGIRD-LSRKTDLIV-LVHNLS-HKIPRYNYSSA-SGQQQPALS------ 836 (1022)
Q Consensus 768 r~~IGyV~Q~~~~-~~~lTV~~~~~~ENI~~g~~~-~~~~v~~~L-~v~gL~-~~~~r~~~~LS-GqrQRvaIA------ 836 (1022)
.-.|||..|+... ++..|+ .|++.-...+ .+..+...| .+ ++. +...+++..|| |||-|+.||
T Consensus 384 ~v~igyf~Q~~~~l~~~~t~-----~d~l~~~~~~~~e~~~r~~L~~f-~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~ 457 (530)
T COG0488 384 TVKIGYFDQHRDELDPDKTV-----LEELSEGFPDGDEQEVRAYLGRF-GFTGEDQEKPVGVLSGGEKARLLLAKLLLQP 457 (530)
T ss_pred ceEEEEEEehhhhcCccCcH-----HHHHHhhCccccHHHHHHHHHHc-CCChHHHhCchhhcCHhHHHHHHHHHHhccC
Confidence 2358999995434 566788 9998765543 367788888 87 875 46789999999 999999999
Q ss_pred ---hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCCccccc
Q 001709 837 ---LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCPYVMPG 894 (1022)
Q Consensus 837 ---LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~~V~~~ 894 (1022)
|||||||+- ||...+..+... +..-++++++|.|..+.+..
T Consensus 458 pNvLiLDEPTNh-------------LDi~s~~aLe~a----L~~f~Gtvl~VSHDr~Fl~~ 501 (530)
T COG0488 458 PNLLLLDEPTNH-------------LDIESLEALEEA----LLDFEGTVLLVSHDRYFLDR 501 (530)
T ss_pred CCEEEEcCCCcc-------------CCHHHHHHHHHH----HHhCCCeEEEEeCCHHHHHh
Confidence 999999995 565555544433 35557899999876666644
No 384
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=8.3e-18 Score=177.70 Aligned_cols=163 Identities=15% Similarity=0.206 Sum_probs=126.0
Q ss_pred eeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc-----hhhhcCceEEEcCCCCCCcc
Q 001709 712 TTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD-----QEGIAGGLCYCDSAGVNLQE 783 (1022)
Q Consensus 712 ~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~-----~~~lr~~IGyV~Q~~~~~~~ 783 (1022)
+.+|++|||+|+ +.+|+||||||||||.++|+|.- .|++++|+|+++|.++ .+..|.+|.+-||.++-++.
T Consensus 17 keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p-~Y~Vt~G~I~~~GedI~~l~~~ERAr~GifLafQ~P~ei~G 95 (251)
T COG0396 17 KEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHP-KYEVTEGEILFDGEDILELSPDERARAGIFLAFQYPVEIPG 95 (251)
T ss_pred hhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCC-CceEecceEEECCcccccCCHhHHHhcCCEEeecCCccCCC
Confidence 589999999999 99999999999999999999985 5689999999998775 44568899999995555998
Q ss_pred ccccccchHHHHhccccc----------hHHHHHHHH-HhcCCcc-ccCCCcC-Cch-HHHHHHHHH---------hhhc
Q 001709 784 LTMEAARFKDEMWMGIRD----------LSRKTDLIV-LVHNLSH-KIPRYNY-SSA-SGQQQPALS---------LLLN 840 (1022)
Q Consensus 784 lTV~~~~~~ENI~~g~~~----------~~~~v~~~L-~v~gL~~-~~~r~~~-~LS-GqrQRvaIA---------LLLD 840 (1022)
.|+ .+.+..+... ..+.+++.+ .+ ++.. +++|++. .+| |+|+|..|+ .|||
T Consensus 96 V~~-----~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l-~~~~~~l~R~vN~GFSGGEkKR~EilQ~~~lePkl~ILD 169 (251)
T COG0396 96 VTN-----SDFLRAAMNARRGARGILPEFIKELKEKAELL-GLDEEFLERYVNEGFSGGEKKRNEILQLLLLEPKLAILD 169 (251)
T ss_pred eeH-----HHHHHHHHHhhhccccccHHHHHHHHHHHHHc-CCCHHHhhcccCCCcCcchHHHHHHHHHHhcCCCEEEec
Confidence 888 7777654331 245677777 76 8875 8888887 599 999999999 8999
Q ss_pred cccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCCcccccC
Q 001709 841 EAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCPYVMPGA 895 (1022)
Q Consensus 841 EPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~~V~~~~ 895 (1022)
||-|+ +|... -..+....+.+......+++++|-.++...+
T Consensus 170 E~DSG-------------LDIda-lk~V~~~i~~lr~~~~~~liITHy~rll~~i 210 (251)
T COG0396 170 EPDSG-------------LDIDA-LKIVAEGINALREEGRGVLIITHYQRLLDYI 210 (251)
T ss_pred CCCcC-------------ccHHH-HHHHHHHHHHHhcCCCeEEEEecHHHHHhhc
Confidence 99996 33222 2233334455666666777787766665443
No 385
>PLN03073 ABC transporter F family; Provisional
Probab=99.72 E-value=5.8e-18 Score=205.25 Aligned_cols=172 Identities=16% Similarity=0.135 Sum_probs=108.9
Q ss_pred CcccccCceeEEEEecCCCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEcc-----ccc-
Q 001709 693 KFIRPEGLSDVFIFCTSDFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAE-----ADD- 763 (1022)
Q Consensus 693 ~~i~~~~l~~~~~~~~~~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg-----~~~- 763 (1022)
+.|.+++++ +.| ++.++|+|+||+|. ++|||||||||||||||+|+|......|++|+|.+.. .+.
T Consensus 176 ~~I~i~nls---~~y--~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t 250 (718)
T PLN03073 176 KDIHMENFS---ISV--GGRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTT 250 (718)
T ss_pred eeEEEceEE---EEe--CCCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCC
Confidence 446655555 343 34679999999999 9999999999999999999996311148899998542 111
Q ss_pred h------------hhhcCceEEEcCCCCC-Cccccc----------cccchHHHHh-----ccc---cchHHHHHHHH-H
Q 001709 764 Q------------EGIAGGLCYCDSAGVN-LQELTM----------EAARFKDEMW-----MGI---RDLSRKTDLIV-L 811 (1022)
Q Consensus 764 ~------------~~lr~~IGyV~Q~~~~-~~~lTV----------~~~~~~ENI~-----~g~---~~~~~~v~~~L-~ 811 (1022)
. ..++..++|++|+... +...++ ....+.+-+. |+. ...+.++..++ .
T Consensus 251 ~~~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~ 330 (718)
T PLN03073 251 ALQCVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAG 330 (718)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHH
Confidence 0 1123447788873221 110111 0000000000 011 12456677788 7
Q ss_pred hcCCc-cccCCCcCCch-HHHHHHHHH---------hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCC
Q 001709 812 VHNLS-HKIPRYNYSSA-SGQQQPALS---------LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPS 880 (1022)
Q Consensus 812 v~gL~-~~~~r~~~~LS-GqrQRvaIA---------LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~ 880 (1022)
+ |+. +..++++.+|| |||||++|| |||||||++ +|...+..+...+. .+ ..
T Consensus 331 l-gl~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~-------------LD~~~~~~l~~~L~-~~---~~ 392 (718)
T PLN03073 331 L-SFTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNH-------------LDLHAVLWLETYLL-KW---PK 392 (718)
T ss_pred C-CCChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCC-------------CCHHHHHHHHHHHH-Hc---CC
Confidence 7 885 56789999999 999999999 999999996 66666665554442 22 45
Q ss_pred eEEEEec
Q 001709 881 TTEVINS 887 (1022)
Q Consensus 881 ~~vVv~~ 887 (1022)
+++++.|
T Consensus 393 tviivsH 399 (718)
T PLN03073 393 TFIVVSH 399 (718)
T ss_pred EEEEEEC
Confidence 6666653
No 386
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.72 E-value=1.2e-17 Score=173.13 Aligned_cols=140 Identities=11% Similarity=0.060 Sum_probs=96.5
Q ss_pred EeeeEEEe--EEEEEcCCCCcHHHHHHHHHcCCCCCCCCce---------EEEEccccc-hhhhcCceEEEcCCCCCCcc
Q 001709 716 KEVHFRTR--RVRLLGLEGAGKTSLFKAILGQGKLVRTINS---------GNLDAEADD-QEGIAGGLCYCDSAGVNLQE 783 (1022)
Q Consensus 716 kdVSL~V~--iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG---------~I~idg~~~-~~~lr~~IGyV~Q~~~~~~~ 783 (1022)
++++|++. +++|+||||||||||+++|+|+. .|..| ++.+++.+. ....++.|+||||++..+.
T Consensus 14 ~~~~l~~~~g~~~i~G~nGsGKStll~al~~l~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~~- 89 (197)
T cd03278 14 DKTTIPFPPGLTAIVGPNGSGKSNIIDAIRWVL---GEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGRY- 89 (197)
T ss_pred CCeeeecCCCcEEEECCCCCCHHHHHHHHHHHh---ccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCce-
Confidence 56888887 99999999999999999999998 66533 455555443 2234578999999543331
Q ss_pred ccccccchHHHHhccccchHHHHHHHHHhcCCccccCCCcCCch-HHHHHHHHH-------------hhhccccCCChhH
Q 001709 784 LTMEAARFKDEMWMGIRDLSRKTDLIVLVHNLSHKIPRYNYSSA-SGQQQPALS-------------LLLNEAKSLGIPW 849 (1022)
Q Consensus 784 lTV~~~~~~ENI~~g~~~~~~~v~~~L~v~gL~~~~~r~~~~LS-GqrQRvaIA-------------LLLDEPTSad~~~ 849 (1022)
.. . ..+++++++.. .+..++.+.+|| |||||++|| +||||||++
T Consensus 90 -~~-----~---------~~~~~~~~l~~---~~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~---- 147 (197)
T cd03278 90 -SI-----I---------SQGDVSEIIEA---PGKKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAA---- 147 (197)
T ss_pred -eE-----E---------ehhhHHHHHhC---CCccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCccc----
Confidence 12 0 12456666622 456789999999 999999988 789999996
Q ss_pred HHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCCccc
Q 001709 850 VLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCPYVM 892 (1022)
Q Consensus 850 v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~~V~ 892 (1022)
+|...+..+...+.+ +.. ..++++++|....+
T Consensus 148 ---------LD~~~~~~l~~~l~~-~~~-~~tiIiitH~~~~~ 179 (197)
T cd03278 148 ---------LDDANVERFARLLKE-FSK-ETQFIVITHRKGTM 179 (197)
T ss_pred ---------CCHHHHHHHHHHHHH-hcc-CCEEEEEECCHHHH
Confidence 666666666654433 332 34666666444433
No 387
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.69 E-value=3.7e-17 Score=174.31 Aligned_cols=148 Identities=16% Similarity=0.082 Sum_probs=105.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCCC-ceEEEEccc-cc-h-----hhhcCceEEEcCCCC---------CCccccc
Q 001709 724 RVRLLGLEGAGKTSLFKAILGQGKLVRTI-NSGNLDAEA-DD-Q-----EGIAGGLCYCDSAGV---------NLQELTM 786 (1022)
Q Consensus 724 iVaLlGpNGAGKSTLLklL~GL~~~~~Pt-sG~I~idg~-~~-~-----~~lr~~IGyV~Q~~~---------~~~~lTV 786 (1022)
+++||||||||||||+++|++++ .++ .|++...+. ++ . ...+..|+++||++. ..+.+||
T Consensus 27 ~~~IvG~NGsGKStll~Ai~~ll---~~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV 103 (251)
T cd03273 27 FNAITGLNGSGKSNILDAICFVL---GITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITV 103 (251)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh---cccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEE
Confidence 99999999999999999999998 776 457777653 32 1 112347999999631 2457888
Q ss_pred cccchHHHHhcccc---------chHHHHHHHH-HhcCCc--------------------cccCCCcCCch-HHHHHHHH
Q 001709 787 EAARFKDEMWMGIR---------DLSRKTDLIV-LVHNLS--------------------HKIPRYNYSSA-SGQQQPAL 835 (1022)
Q Consensus 787 ~~~~~~ENI~~g~~---------~~~~~v~~~L-~v~gL~--------------------~~~~r~~~~LS-GqrQRvaI 835 (1022)
.+||.++.. ...+++.+++ .+ ||. +..++++.+|| |||||++|
T Consensus 104 -----~r~I~~~~~~~~~in~~~~~~~~v~~~L~~v-gL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~l 177 (251)
T cd03273 104 -----TRQIVLGGTNKYLINGHRAQQQRVQDLFQSV-QLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVAL 177 (251)
T ss_pred -----EEEEEcCCceEEEECCEEeeHHHHHHHHHHc-CCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHH
Confidence 766655431 1346777888 77 875 45678999999 99999999
Q ss_pred H-------------hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCCcccccC
Q 001709 836 S-------------LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCPYVMPGA 895 (1022)
Q Consensus 836 A-------------LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~~V~~~~ 895 (1022)
| |||||||++ +|...+..+...+.+. .. ..++++++|.+.++..+
T Consensus 178 a~al~~~~~~~~~illlDEPt~~-------------ld~~~~~~~~~~l~~~-~~-g~~ii~iSH~~~~~~~~ 235 (251)
T cd03273 178 SLILALLLFKPAPMYILDEVDAA-------------LDLSHTQNIGRMIKTH-FK-GSQFIVVSLKEGMFNNA 235 (251)
T ss_pred HHHHHHhhccCCCEEEEeCCCcC-------------CCHHHHHHHHHHHHHH-cC-CCEEEEEECCHHHHHhC
Confidence 8 789999996 6776777666655443 22 33566666555555443
No 388
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.69 E-value=1.5e-16 Score=167.86 Aligned_cols=173 Identities=14% Similarity=0.098 Sum_probs=98.2
Q ss_pred CeeEEEeeeEEEe---EEEEEcCCCCcHHHHH-HHHHcCC-----CCCCCCceEEEEccccc-hhhhc-CceEEEcCCCC
Q 001709 711 FTTVFKEVHFRTR---RVRLLGLEGAGKTSLF-KAILGQG-----KLVRTINSGNLDAEADD-QEGIA-GGLCYCDSAGV 779 (1022)
Q Consensus 711 ~~~aLkdVSL~V~---iVaLlGpNGAGKSTLL-klL~GL~-----~~~~PtsG~I~idg~~~-~~~lr-~~IGyV~Q~~~ 779 (1022)
+..+|++|||+|+ +++|+|+||||||||+ .+|...- ....|..+...-..... ....+ ...++..|++.
T Consensus 7 ~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (226)
T cd03270 7 REHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMDKPDVDSIEGLSPAIAIDQKT 86 (226)
T ss_pred hhhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHHhhcccchhhhhhcccCccccccccCCCceEEecCCC
Confidence 4579999999999 9999999999999996 3332100 00001111100000000 01111 23344444232
Q ss_pred C--CccccccccchHHHHhc-----cccchHHHHHHHH-HhcCCcc-ccCCCcCCch-HHHHHHHHH-----------hh
Q 001709 780 N--LQELTMEAARFKDEMWM-----GIRDLSRKTDLIV-LVHNLSH-KIPRYNYSSA-SGQQQPALS-----------LL 838 (1022)
Q Consensus 780 ~--~~~lTV~~~~~~ENI~~-----g~~~~~~~v~~~L-~v~gL~~-~~~r~~~~LS-GqrQRvaIA-----------LL 838 (1022)
. .+..++. .+.+...+ ......++ .+++ .+ +|.+ ..++++.+|| |||||++|| ||
T Consensus 87 ~~~~~~~~v~--~~~~~~~~~~~~~~~~~~~~~-~~~l~~~-~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~~~lll 162 (226)
T cd03270 87 TSRNPRSTVG--TVTEIYDYLRLLFARVGIRER-LGFLVDV-GLGYLTLSRSAPTLSGGEAQRIRLATQIGSGLTGVLYV 162 (226)
T ss_pred CCCCCCccHH--HHHHHHHHHHHHhhhhhHHHH-HHHHHHC-CCCcccccCccCcCCHHHHHHHHHHHHHHhCCCCCEEE
Confidence 2 2333430 01121111 11112233 4567 77 9986 5899999999 999999999 89
Q ss_pred hccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCCcccccCcccccc
Q 001709 839 LNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCPYVMPGAVSASLS 901 (1022)
Q Consensus 839 LDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~~V~~~~~~a~~l 901 (1022)
|||||++ +|...+..+...+.+. .....++++++|....+..++..+.+
T Consensus 163 lDEPt~g-------------LD~~~~~~l~~~l~~~-~~~g~tii~itH~~~~~~~~d~i~~l 211 (226)
T cd03270 163 LDEPSIG-------------LHPRDNDRLIETLKRL-RDLGNTVLVVEHDEDTIRAADHVIDI 211 (226)
T ss_pred EeCCccC-------------CCHHHHHHHHHHHHHH-HhCCCEEEEEEeCHHHHHhCCEEEEe
Confidence 9999997 7777777777666544 44445666666444444444444444
No 389
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.67 E-value=1.2e-16 Score=168.45 Aligned_cols=172 Identities=15% Similarity=0.084 Sum_probs=104.2
Q ss_pred CCCeeEEEeeeEEEe-EEEEEcCCCCcHHHHHHHHHcCC-------------CCCCCCce--------EEEEcccc----
Q 001709 709 SDFTTVFKEVHFRTR-RVRLLGLEGAGKTSLFKAILGQG-------------KLVRTINS--------GNLDAEAD---- 762 (1022)
Q Consensus 709 ~~~~~aLkdVSL~V~-iVaLlGpNGAGKSTLLklL~GL~-------------~~~~PtsG--------~I~idg~~---- 762 (1022)
++...++++++ . +++|+||||||||||+++|++++ .+..+++| +|.++..+
T Consensus 12 y~~~~~~~~~~---~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~v~i~~~~~~~~~~ 88 (243)
T cd03272 12 YKDQTVIEPFS---PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMSAYVEIIFDNSDNRFP 88 (243)
T ss_pred cccCcccccCC---CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCceEEEEEEEEcCCCccC
Confidence 34566788877 5 89999999999999999998432 11155566 55555321
Q ss_pred c---hhhhcCceEEEcCCCCC-Cc-cccccccchHHHHhc----cccchHH----HHHHHH-HhcCCccccCCCcCCch-
Q 001709 763 D---QEGIAGGLCYCDSAGVN-LQ-ELTMEAARFKDEMWM----GIRDLSR----KTDLIV-LVHNLSHKIPRYNYSSA- 827 (1022)
Q Consensus 763 ~---~~~lr~~IGyV~Q~~~~-~~-~lTV~~~~~~ENI~~----g~~~~~~----~v~~~L-~v~gL~~~~~r~~~~LS- 827 (1022)
. ...+++.+||++| ... +. ..|. .|...+ +...... ...++. .+ ++.+..++++.+||
T Consensus 89 ~~~~~~~i~r~ig~~~~-~~~l~~~~~t~-----~ei~~~l~~~gl~~~~~~~~~~qg~i~~l~-~l~~~~~~~~~~lS~ 161 (243)
T cd03272 89 IDKEEVRLRRTIGLKKD-EYFLDKKNVTK-----NDVMNLLESAGFSRSNPYYIVPQGKINSLT-NMKQDEQQEMQQLSG 161 (243)
T ss_pred CCCCEEEEEEEEECCCC-EEEECCeEcCH-----HHHHHHHHHcCCCCCCCcEEEEcCchHHhh-hccccccccccccCH
Confidence 1 1234567888877 333 33 2343 222211 1111000 011222 23 55556778999999
Q ss_pred HHHHHHHHH-------------hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCCccccc
Q 001709 828 SGQQQPALS-------------LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCPYVMPG 894 (1022)
Q Consensus 828 GqrQRvaIA-------------LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~~V~~~ 894 (1022)
|||||++|| |||||||++ +|...+..+...+.+ +.. ..++++.+|.+.+...
T Consensus 162 G~~~r~~la~~l~~~~~~~~~illlDEp~~~-------------ld~~~~~~~~~~l~~-~~~-~~~ii~~~h~~~~~~~ 226 (243)
T cd03272 162 GQKSLVALALIFAIQKCDPAPFYLFDEIDAA-------------LDAQYRTAVANMIKE-LSD-GAQFITTTFRPELLEV 226 (243)
T ss_pred HHHHHHHHHHHHHHhccCCCCEEEEECCccC-------------CCHHHHHHHHHHHHH-HhC-CCEEEEEecCHHHHhh
Confidence 999999999 789999996 666666666655543 333 3345555766666666
Q ss_pred CcccccccCCC
Q 001709 895 AVSASLSWGAS 905 (1022)
Q Consensus 895 ~~~a~~l~~~~ 905 (1022)
++..+.+.-+.
T Consensus 227 ~d~i~~l~~~~ 237 (243)
T cd03272 227 ADKFYGVKFRN 237 (243)
T ss_pred CCEEEEEEEEC
Confidence 66666655443
No 390
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.64 E-value=1.1e-16 Score=163.45 Aligned_cols=146 Identities=18% Similarity=0.197 Sum_probs=116.3
Q ss_pred EEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc----hhhhcCceEEEcCCCCCCcccccc
Q 001709 715 FKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD----QEGIAGGLCYCDSAGVNLQELTME 787 (1022)
Q Consensus 715 LkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~----~~~lr~~IGyV~Q~~~~~~~lTV~ 787 (1022)
|-.+|.++. ++-+||||||||||||-.++|+. |-+|+|.++|.++ ..++.++-+|+.|+....+.|.|
T Consensus 15 L~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~----~~sGsi~~~G~~l~~~~~~eLArhRAYLsQqq~p~f~mpV- 89 (248)
T COG4138 15 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT----SGSGSIQFAGQPLEAWSATELARHRAYLSQQQTPPFAMPV- 89 (248)
T ss_pred ccccccccccceEEEEECCCCccHHHHHHHHhCCC----CCCceEEECCcchhHHhHhHHHHHHHHHhhccCCcchhhh-
Confidence 556777777 99999999999999999999999 9999999999876 55678888999995444555889
Q ss_pred ccchHHHHhccccc--hHHHHHHHH-HhcCCccccCCCcCCch-HHHHHHHHH----------------hhhccccCCCh
Q 001709 788 AARFKDEMWMGIRD--LSRKTDLIV-LVHNLSHKIPRYNYSSA-SGQQQPALS----------------LLLNEAKSLGI 847 (1022)
Q Consensus 788 ~~~~~ENI~~g~~~--~~~~v~~~L-~v~gL~~~~~r~~~~LS-GqrQRvaIA----------------LLLDEPTSad~ 847 (1022)
+..+.+...+ ....++.+. ++ +|.++++|..++|| |+=|||-+| ||||||.+.
T Consensus 90 ----~~YL~L~qP~~~~a~~i~~i~~~L-~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~~-- 162 (248)
T COG4138 90 ----WHYLTLHQPDKTRTELLNDVAGAL-ALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNS-- 162 (248)
T ss_pred ----hhhhhhcCchHHHHHHHHHHHhhh-cccchhhhhhhhcCcccceeeEEeEEEEEecCCCCccceeEEecCCCcc--
Confidence 8888776553 344567777 77 99999999999999 999999999 999999996
Q ss_pred hHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEE
Q 001709 848 PWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVI 885 (1022)
Q Consensus 848 ~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv 885 (1022)
+|. .|+.+++.++..+-.. +.++|+
T Consensus 163 -----------LDv-AQ~~aLdrll~~~c~~-G~~vim 187 (248)
T COG4138 163 -----------LDV-AQQSALDRLLSALCQQ-GLAIVM 187 (248)
T ss_pred -----------hhH-HHHHHHHHHHHHHHhC-CcEEEE
Confidence 333 3455566666666554 455555
No 391
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.63 E-value=3.8e-16 Score=193.56 Aligned_cols=171 Identities=16% Similarity=0.184 Sum_probs=126.9
Q ss_pred CCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc-hhhhcCceEEEcCCCCCCcccc
Q 001709 710 DFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD-QEGIAGGLCYCDSAGVNLQELT 785 (1022)
Q Consensus 710 ~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~-~~~lr~~IGyV~Q~~~~~~~lT 785 (1022)
+.+++|+||+=-++ .+||+|+|||||||||++|+|=.. --..+|+|+++|.+. .+..+|.+|||-|++...+.+|
T Consensus 802 ~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t-~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~T 880 (1391)
T KOG0065|consen 802 GTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKT-GGYIEGDILISGFPKDQETFARVSGYVEQQDIHSPELT 880 (1391)
T ss_pred cceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcc-cceEEeEEEECCeeCchhhhccccceeecccccCcccc
Confidence 45678999998887 999999999999999999999640 013478999999877 5778899999999776699999
Q ss_pred ccccchHHHHhcccc-------c---hHHHHHHHH-HhcCCccccCCCcCC----ch-HHHHHHHHH----------hhh
Q 001709 786 MEAARFKDEMWMGIR-------D---LSRKTDLIV-LVHNLSHKIPRYNYS----SA-SGQQQPALS----------LLL 839 (1022)
Q Consensus 786 V~~~~~~ENI~~g~~-------~---~~~~v~~~L-~v~gL~~~~~r~~~~----LS-GqrQRvaIA----------LLL 839 (1022)
| +|-+.|.+. + ..+.+++++ .+ +|.+..+.-++. || .||+|+.|| |+|
T Consensus 881 V-----rESL~fSA~LRlp~~v~~~ek~~yVe~Vi~ll-eL~~~~daiVG~~G~GLs~eQRKrLTIgVELvA~P~~ilFL 954 (1391)
T KOG0065|consen 881 V-----RESLRFSAALRLPKEVSDEEKYEYVEEVIELL-ELKEYADALVGLPGSGLSTEQRKRLTIGVELVANPSSILFL 954 (1391)
T ss_pred h-----HHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHh-CchhhhhhhccCCCCCCCHHHhceeeEEEEEecCCceeEEe
Confidence 9 999998653 1 235689999 77 999877766666 99 999999999 999
Q ss_pred ccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCC--cccccCcccccc
Q 001709 840 NEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCP--YVMPGAVSASLS 901 (1022)
Q Consensus 840 DEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~--~V~~~~~~a~~l 901 (1022)
|||||+ ||+..--. +..+++.+..+..+++.=.|-| .+++.+|+-+++
T Consensus 955 DEPTSG-------------LDsqaA~~-i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLL 1004 (1391)
T KOG0065|consen 955 DEPTSG-------------LDSQAAAI-VMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLL 1004 (1391)
T ss_pred cCCCCC-------------ccHHHHHH-HHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHH
Confidence 999997 55443333 3334455555544444433333 345555655553
No 392
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.63 E-value=1.1e-15 Score=180.36 Aligned_cols=145 Identities=23% Similarity=0.252 Sum_probs=113.6
Q ss_pred CcccccCceeEEEEecCCCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccchhhhcC
Q 001709 693 KFIRPEGLSDVFIFCTSDFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADDQEGIAG 769 (1022)
Q Consensus 693 ~~i~~~~l~~~~~~~~~~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~~~~lr~ 769 (1022)
..|++++++ +. .+++.+.|++.+|+|+ .+-|.|+||||||||+|+|+||. +--+|+|.+- ...
T Consensus 391 ~~i~~~nl~---l~-~p~~~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLW---P~g~G~I~~P-------~~~ 456 (604)
T COG4178 391 HGITLENLS---LR-TPDGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLW---PWGSGRISMP-------ADS 456 (604)
T ss_pred ceeEEeeee---EE-CCCCCeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccC---ccCCCceecC-------CCC
Confidence 345544444 43 4455689999999999 99999999999999999999999 7778887642 124
Q ss_pred ceEEEcCCCCCCccccccccchHHHHhccccc---hHHHHHHHH-HhcCCccccCCC------cCCch-HHHHHHHHH--
Q 001709 770 GLCYCDSAGVNLQELTMEAARFKDEMWMGIRD---LSRKTDLIV-LVHNLSHKIPRY------NYSSA-SGQQQPALS-- 836 (1022)
Q Consensus 770 ~IGyV~Q~~~~~~~lTV~~~~~~ENI~~g~~~---~~~~v~~~L-~v~gL~~~~~r~------~~~LS-GqrQRvaIA-- 836 (1022)
.+-|+|| .+.+|..|. +|-|.|+... .++.+.++| ++ ||.++.++. -..|| |||||+|+|
T Consensus 457 ~~lflpQ-~PY~p~GtL-----re~l~YP~~~~~~~d~~l~~vL~~v-gL~~L~~rl~~~~~W~~vLS~GEqQRlafARi 529 (604)
T COG4178 457 ALLFLPQ-RPYLPQGTL-----REALCYPNAAPDFSDAELVAVLHKV-GLGDLAERLDEEDRWDRVLSGGEQQRLAFARL 529 (604)
T ss_pred ceEEecC-CCCCCCccH-----HHHHhCCCCCCCCChHHHHHHHHHc-CcHHHHHHHhccCcHhhhcChhHHHHHHHHHH
Confidence 5789999 677888899 9999998663 466788888 88 998765443 33699 999999999
Q ss_pred -------hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHH
Q 001709 837 -------LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAV 871 (1022)
Q Consensus 837 -------LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~l 871 (1022)
++|||.||+ +|......+...+
T Consensus 530 lL~kP~~v~LDEATsA-------------LDe~~e~~l~q~l 558 (604)
T COG4178 530 LLHKPKWVFLDEATSA-------------LDEETEDRLYQLL 558 (604)
T ss_pred HHcCCCEEEEecchhc-------------cChHHHHHHHHHH
Confidence 899999997 6666666555444
No 393
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.62 E-value=7.8e-17 Score=169.06 Aligned_cols=155 Identities=10% Similarity=-0.013 Sum_probs=103.7
Q ss_pred CCeeEEEeeeEEEeEEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccchhhhcCceEEEcCCCCCCcccccccc
Q 001709 710 DFTTVFKEVHFRTRRVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADDQEGIAGGLCYCDSAGVNLQELTMEAA 789 (1022)
Q Consensus 710 ~~~~aLkdVSL~V~iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~~~~lr~~IGyV~Q~~~~~~~lTV~~~ 789 (1022)
++..++++++| ++++|+||||||||||+++|...+ | .+.....++++++++|....++.+|+
T Consensus 15 ~~~~~l~~~~~--~i~~ivGpNGaGKSTll~~i~~~~-------G------~~~~~~~~~~i~~~~~~~~~~~~~~~--- 76 (212)
T cd03274 15 AGEQVIGPFHK--SFSAIVGPNGSGKSNVIDSMLFVF-------G------FRASKMRQKKLSDLIHNSAGHPNLDS--- 76 (212)
T ss_pred CCCeeeccCCC--CeEEEECCCCCCHHHHHHHHHHHh-------c------cCHHHhhhhhHHHHhcCCCCCCCCce---
Confidence 56779999987 689999999999999999998443 2 11101112568888885444676777
Q ss_pred chHHHHhcccc-------------chHHH----HHHHH-HhcCCccccCCCcCCch-HHHHHHHHH-------------h
Q 001709 790 RFKDEMWMGIR-------------DLSRK----TDLIV-LVHNLSHKIPRYNYSSA-SGQQQPALS-------------L 837 (1022)
Q Consensus 790 ~~~ENI~~g~~-------------~~~~~----v~~~L-~v~gL~~~~~r~~~~LS-GqrQRvaIA-------------L 837 (1022)
++++.+... ..... ..+++ .+ +|.+..++++..|| |||||++|| +
T Consensus 77 --~~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~-~L~~~~~~~~~~lS~G~~~r~~la~al~~~~~~~p~il 153 (212)
T cd03274 77 --CSVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEVEQIA-QMPKKSWKNISNLSGGEKTLSSLALVFALHHYKPTPLY 153 (212)
T ss_pred --EEEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcEEEee-ccccccccchhhcCHHHHHHHHHHHHHHhcccCCCCEE
Confidence 555443321 01111 14445 44 78888889999999 999999999 6
Q ss_pred hhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCCcccccCccccc
Q 001709 838 LLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCPYVMPGAVSASL 900 (1022)
Q Consensus 838 LLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~~V~~~~~~a~~ 900 (1022)
||||||++ +|...+..+...+.+ +. ...+++++.+.+.+..-++..+.
T Consensus 154 ilDEPt~g-------------LD~~~~~~l~~~l~~-~~-~~~~~iivs~~~~~~~~~d~v~~ 201 (212)
T cd03274 154 VMDEIDAA-------------LDFRNVSIVANYIKE-RT-KNAQFIVISLRNNMFELADRLVG 201 (212)
T ss_pred EEcCCCcC-------------CCHHHHHHHHHHHHH-Hc-CCCEEEEEECcHHHHHhCCEEEE
Confidence 78999996 666677666655544 33 34577777765555554444443
No 394
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.62 E-value=7.1e-16 Score=160.75 Aligned_cols=152 Identities=13% Similarity=0.138 Sum_probs=100.8
Q ss_pred EEeeeEEEeEEEEEcCCCCcHHHHHHHHH----cCCCCCCCCceEEEEccccc-hhhhcCceEEEcCCCC----C-Cccc
Q 001709 715 FKEVHFRTRRVRLLGLEGAGKTSLFKAIL----GQGKLVRTINSGNLDAEADD-QEGIAGGLCYCDSAGV----N-LQEL 784 (1022)
Q Consensus 715 LkdVSL~V~iVaLlGpNGAGKSTLLklL~----GL~~~~~PtsG~I~idg~~~-~~~lr~~IGyV~Q~~~----~-~~~l 784 (1022)
..+++|+..+++|+|||||||||||++|. |.. .|+.|.+..+...+ ....+..|+++||+.. . ...+
T Consensus 15 ~~~l~~~~g~~~i~G~NGsGKTTLl~ai~~~l~G~~---~~~~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~~ 91 (204)
T cd03240 15 RSEIEFFSPLTLIVGQNGAGKTTIIEALKYALTGEL---PPNSKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRSL 91 (204)
T ss_pred ceEEecCCCeEEEECCCCCCHHHHHHHHHHHHcCCC---CcccccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEEh
Confidence 33455555599999999999999999995 888 88888776222112 2344678999999541 1 2335
Q ss_pred cccccchHHHHhccccchHHHHHHHHHhcCCccccCCCcCCch-HHHHH------HHHH---------hhhccccCCChh
Q 001709 785 TMEAARFKDEMWMGIRDLSRKTDLIVLVHNLSHKIPRYNYSSA-SGQQQ------PALS---------LLLNEAKSLGIP 848 (1022)
Q Consensus 785 TV~~~~~~ENI~~g~~~~~~~v~~~L~v~gL~~~~~r~~~~LS-GqrQR------vaIA---------LLLDEPTSad~~ 848 (1022)
|+ .||+.++.. ..++ ..+++.+.+|| ||+|| ++|| +||||||+.
T Consensus 92 ~~-----~~~~~~~~~---~~~~---------~~~~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~--- 151 (204)
T cd03240 92 AI-----LENVIFCHQ---GESN---------WPLLDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTN--- 151 (204)
T ss_pred hH-----hhceeeech---HHHH---------HHHhcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccc---
Confidence 77 888877531 1121 12378889999 99997 4555 999999996
Q ss_pred HHHHHhhhhcccHHHHH-HHHHHHHHHHHhC-CCeEEEEecCCcccccCccccc
Q 001709 849 WVLAITNKFSVSAHQQR-AAIDAVMQAYQAS-PSTTEVINSCPYVMPGAVSASL 900 (1022)
Q Consensus 849 ~v~~I~~~~~ld~~~~~-~~i~~ll~~~~~t-~~~~vVv~~~~~V~~~~~~a~~ 900 (1022)
+|...+. .+...+ ..+... ..++++++|.......++..+.
T Consensus 152 ----------LD~~~~~~~l~~~l-~~~~~~~~~~iiiitH~~~~~~~~d~i~~ 194 (204)
T cd03240 152 ----------LDEENIEESLAEII-EERKSQKNFQLIVITHDEELVDAADHIYR 194 (204)
T ss_pred ----------cCHHHHHHHHHHHH-HHHHhccCCEEEEEEecHHHHhhCCEEEE
Confidence 6777666 555544 344433 4467777766555555444443
No 395
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.60 E-value=2.2e-15 Score=163.40 Aligned_cols=169 Identities=15% Similarity=0.115 Sum_probs=111.5
Q ss_pred eEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHH-----cCCCC--CCCCce-----------EEEEccccc--------
Q 001709 713 TVFKEVHFRTR---RVRLLGLEGAGKTSLFKAIL-----GQGKL--VRTINS-----------GNLDAEADD-------- 763 (1022)
Q Consensus 713 ~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~-----GL~~~--~~PtsG-----------~I~idg~~~-------- 763 (1022)
..|+|||++|+ +++|.|+||||||||++.+. ..+.. ..|..+ -|.+|..++
T Consensus 9 ~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~~ 88 (261)
T cd03271 9 NNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSNP 88 (261)
T ss_pred hcCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCcH
Confidence 46999999999 99999999999999999662 11100 012111 355552221
Q ss_pred ------hhhhcC----------------ceEEEcCCCCCCccccccccchHHHHhcccc-chHHHHHHHH-HhcCCcc-c
Q 001709 764 ------QEGIAG----------------GLCYCDSAGVNLQELTMEAARFKDEMWMGIR-DLSRKTDLIV-LVHNLSH-K 818 (1022)
Q Consensus 764 ------~~~lr~----------------~IGyV~Q~~~~~~~lTV~~~~~~ENI~~g~~-~~~~~v~~~L-~v~gL~~-~ 818 (1022)
...+|. .+.|..++...+.++|+ .|++.|... ...+++.+++ .+ ||.. .
T Consensus 89 ~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv-----~e~~~~~~~~~~~~~~~~~L~~v-gL~~l~ 162 (261)
T cd03271 89 ATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTV-----EEALEFFENIPKIARKLQTLCDV-GLGYIK 162 (261)
T ss_pred HHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCH-----HHHHHHHHhhhhHHHHHHHHHHc-CCchhh
Confidence 111111 13444442222567888 888876543 1234566777 87 9987 5
Q ss_pred cCCCcCCch-HHHHHHHHH------------hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEE
Q 001709 819 IPRYNYSSA-SGQQQPALS------------LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVI 885 (1022)
Q Consensus 819 ~~r~~~~LS-GqrQRvaIA------------LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv 885 (1022)
.++.+.+|| |||||++|| +||||||++ +|.+.+..+...+.+ +.....+++++
T Consensus 163 l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsg-------------LD~~~~~~l~~~L~~-l~~~g~tvIii 228 (261)
T cd03271 163 LGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTG-------------LHFHDVKKLLEVLQR-LVDKGNTVVVI 228 (261)
T ss_pred hcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCC-------------CCHHHHHHHHHHHHH-HHhCCCEEEEE
Confidence 899999999 999999999 899999997 677777777665544 44455677777
Q ss_pred ecCCcccccCcccccc
Q 001709 886 NSCPYVMPGAVSASLS 901 (1022)
Q Consensus 886 ~~~~~V~~~~~~a~~l 901 (1022)
.|-...+..++..+.+
T Consensus 229 tH~~~~i~~aD~ii~L 244 (261)
T cd03271 229 EHNLDVIKCADWIIDL 244 (261)
T ss_pred eCCHHHHHhCCEEEEe
Confidence 7665555555655555
No 396
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.57 E-value=1.8e-15 Score=174.26 Aligned_cols=158 Identities=18% Similarity=0.172 Sum_probs=108.7
Q ss_pred ceeEEEEecCCCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccchhhhcCceEEEcC
Q 001709 700 LSDVFIFCTSDFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADDQEGIAGGLCYCDS 776 (1022)
Q Consensus 700 l~~~~~~~~~~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~~~~lr~~IGyV~Q 776 (1022)
++++.|.|. +...++++++|-|. +|++|||||||||||||+|+|.+ .|+.|.|.-... ..+++--|
T Consensus 392 ~~nv~F~y~-~~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl---~p~~G~vs~~~H-------~~~~~y~Q 460 (614)
T KOG0927|consen 392 VQNVSFGYS-DNPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDL---QPTIGMVSRHSH-------NKLPRYNQ 460 (614)
T ss_pred EeccccCCC-CcchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhcc---cccccccccccc-------ccchhhhh
Confidence 344443333 33478899999988 99999999999999999999999 999999975432 22344445
Q ss_pred CCC--CCccccccccchHHHHhcccc--chHHHHHHHH-HhcCCc-cccCCCcCCch-HHHHHHHHH---------hhhc
Q 001709 777 AGV--NLQELTMEAARFKDEMWMGIR--DLSRKTDLIV-LVHNLS-HKIPRYNYSSA-SGQQQPALS---------LLLN 840 (1022)
Q Consensus 777 ~~~--~~~~lTV~~~~~~ENI~~g~~--~~~~~v~~~L-~v~gL~-~~~~r~~~~LS-GqrQRvaIA---------LLLD 840 (1022)
+.. ..-+.++ .|++.=-.. ...+.+..+| .+ ||. +....+..+|| |||.||.+| ||||
T Consensus 461 h~~e~ldl~~s~-----le~~~~~~~~~~~~e~~r~ilgrf-gLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLD 534 (614)
T KOG0927|consen 461 HLAEQLDLDKSS-----LEFMMPKFPDEKELEEMRSILGRF-GLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLD 534 (614)
T ss_pred hhHhhcCcchhH-----HHHHHHhccccchHHHHHHHHHHh-CCCccccccchhhcccccchhHHHHHHHhcCCcEEEec
Confidence 322 2223566 666542222 3556788888 98 998 66788999999 999999999 9999
Q ss_pred cccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCCcc
Q 001709 841 EAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCPYV 891 (1022)
Q Consensus 841 EPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~~V 891 (1022)
|||++ +|... ++++.+.+.+-+++++++.|.-++
T Consensus 535 EPtnh-------------LDi~t----id~laeaiNe~~Ggvv~vSHDfrl 568 (614)
T KOG0927|consen 535 EPTNH-------------LDIET----IDALAEAINEFPGGVVLVSHDFRL 568 (614)
T ss_pred CCCcC-------------CCchh----HHHHHHHHhccCCceeeeechhhH
Confidence 99996 33222 223333445556777777543333
No 397
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.55 E-value=1.3e-14 Score=162.49 Aligned_cols=173 Identities=15% Similarity=0.085 Sum_probs=127.0
Q ss_pred ceeEEEEecCCCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc----hhhhcCceE
Q 001709 700 LSDVFIFCTSDFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD----QEGIAGGLC 772 (1022)
Q Consensus 700 l~~~~~~~~~~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~----~~~lr~~IG 772 (1022)
++++.+.|... .--+..||++|+ +|-|+|.||||||||+++|.||+ +|++|+|++||.++ .++.|+-++
T Consensus 325 lrnvrfay~~~-~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~---~PqsG~I~ldg~pV~~e~ledYR~LfS 400 (546)
T COG4615 325 LRNVRFAYQDN-AFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLY---QPQSGEILLDGKPVSAEQLEDYRKLFS 400 (546)
T ss_pred eeeeeeccCcc-cceecceeeEEecCcEEEEECCCCCcHHHHHHHHhccc---CCCCCceeECCccCCCCCHHHHHHHHH
Confidence 55655555433 245889999999 99999999999999999999999 99999999998765 677888888
Q ss_pred EEcCCCCC-CccccccccchHHHHhccccchHHHHHHHH-HhcCCccc---cCCC--cCCch-HHHHHHHHH--------
Q 001709 773 YCDSAGVN-LQELTMEAARFKDEMWMGIRDLSRKTDLIV-LVHNLSHK---IPRY--NYSSA-SGQQQPALS-------- 836 (1022)
Q Consensus 773 yV~Q~~~~-~~~lTV~~~~~~ENI~~g~~~~~~~v~~~L-~v~gL~~~---~~r~--~~~LS-GqrQRvaIA-------- 836 (1022)
-||. +.. |+. ++. .|+- ...+.++..+ .+ .|.++ .|.. +-.|| |||+|+|+-
T Consensus 401 avFs-DyhLF~~-ll~----~e~~-----as~q~i~~~LqrL-el~~ktsl~d~~fs~~kLStGQkKRlAll~AllEeR~ 468 (546)
T COG4615 401 AVFS-DYHLFDQ-LLG----PEGK-----ASPQLIEKWLQRL-ELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERD 468 (546)
T ss_pred HHhh-hHhhhHh-hhC----CccC-----CChHHHHHHHHHH-HHhhhhcccCCcccccccccchHHHHHHHHHHHhhCC
Confidence 8998 444 553 331 2221 1345667777 55 55553 3333 33699 999999987
Q ss_pred -hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCCcccccCcccccc
Q 001709 837 -LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCPYVMPGAVSASLS 901 (1022)
Q Consensus 837 -LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~~V~~~~~~a~~l 901 (1022)
++|||=-+- -|++=|+..-..++-.+++..+|++.|+|.+.-...+|.-+.+
T Consensus 469 Ilv~DEWAAD-------------QDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~YF~~ADrll~~ 521 (546)
T COG4615 469 ILVLDEWAAD-------------QDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYFIHADRLLEM 521 (546)
T ss_pred eEEeehhhcc-------------CChHHHHHHHHHHhHHHHHhCCeEEEEecCchhhhhHHHHHHH
Confidence 889987663 3556677777777788899999999998877777665555443
No 398
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.55 E-value=1.3e-14 Score=163.17 Aligned_cols=168 Identities=18% Similarity=0.201 Sum_probs=117.8
Q ss_pred cCceeEEEEecCCCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccchhhhcCceEEE
Q 001709 698 EGLSDVFIFCTSDFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADDQEGIAGGLCYC 774 (1022)
Q Consensus 698 ~~l~~~~~~~~~~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~~~~lr~~IGyV 774 (1022)
-+|.+|.| .+.+.++.++.++|-|. +|+||||||.||||||++|.|-+ .|+.|+.. ...|-+||+.
T Consensus 587 LGlH~VtF-gy~gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl---~P~~GE~R-------KnhrL~iG~F 655 (807)
T KOG0066|consen 587 LGLHDVTF-GYPGQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKL---DPNDGELR-------KNHRLRIGWF 655 (807)
T ss_pred eecccccc-cCCCCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCC---CCCcchhh-------ccceeeeech
Confidence 35666664 44567889999999998 99999999999999999999999 99999875 3346679999
Q ss_pred cCCCCC--C-ccccccccchHHHHhccccchHHHHHHHH-HhcCCcccc-CCCcCCch-HHHHHHHHH---------hhh
Q 001709 775 DSAGVN--L-QELTMEAARFKDEMWMGIRDLSRKTDLIV-LVHNLSHKI-PRYNYSSA-SGQQQPALS---------LLL 839 (1022)
Q Consensus 775 ~Q~~~~--~-~~lTV~~~~~~ENI~~g~~~~~~~v~~~L-~v~gL~~~~-~r~~~~LS-GqrQRvaIA---------LLL 839 (1022)
.| ..+ + .+-|. .|.+.-+..-..+.++..| .+ ||...+ .-.+..|| ||+-||++| |||
T Consensus 656 dQ-h~~E~L~~Eetp-----~EyLqr~FNlpyq~ARK~LG~f-GL~sHAHTikikdLSGGQKaRValaeLal~~PDvlIL 728 (807)
T KOG0066|consen 656 DQ-HANEALNGEETP-----VEYLQRKFNLPYQEARKQLGTF-GLASHAHTIKIKDLSGGQKARVALAELALGGPDVLIL 728 (807)
T ss_pred hh-hhHHhhccccCH-----HHHHHHhcCCChHHHHHHhhhh-hhhhccceEeeeecCCcchHHHHHHHHhcCCCCEEEe
Confidence 98 333 2 23355 5555433222345677888 88 986443 45678999 999999999 999
Q ss_pred ccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCCcccccCccccc
Q 001709 840 NEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCPYVMPGAVSASL 900 (1022)
Q Consensus 840 DEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~~V~~~~~~a~~ 900 (1022)
||||+. +|... |+++-+++.+-.+.+++|.|....+.-.+..+|
T Consensus 729 DEPTNN-------------LDIES----IDALaEAIney~GgVi~VsHDeRLi~eT~C~Lw 772 (807)
T KOG0066|consen 729 DEPTNN-------------LDIES----IDALAEAINEYNGGVIMVSHDERLIVETDCNLW 772 (807)
T ss_pred cCCCCC-------------cchhh----HHHHHHHHHhccCcEEEEecccceeeecCceEE
Confidence 999985 22211 222223334445788888766666644444333
No 399
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.54 E-value=2.9e-14 Score=161.92 Aligned_cols=159 Identities=18% Similarity=0.207 Sum_probs=115.3
Q ss_pred CCCeeEEEeeeEEEe--------EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccchhhhcCceEEEcCCCCC
Q 001709 709 SDFTTVFKEVHFRTR--------RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADDQEGIAGGLCYCDSAGVN 780 (1022)
Q Consensus 709 ~~~~~aLkdVSL~V~--------iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~~~~lr~~IGyV~Q~~~~ 780 (1022)
.+-+..+.++.|+|. +++++||||-||||+.|+|+|.+ +|++|. .. .-+|+|-|| ...
T Consensus 346 ~~~~k~~g~F~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~i---kPdeg~-~~---------~~~vSyKPQ-yI~ 411 (591)
T COG1245 346 PDLKKTYGDFKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVI---KPDEGS-EE---------DLKVSYKPQ-YIS 411 (591)
T ss_pred chheeecCceEEEecCCeeecceEEEEECCCCcchHHHHHHHhccc---cCCCCC-Cc---------cceEeecce-eec
Confidence 344566778888886 99999999999999999999999 999997 11 235789999 444
Q ss_pred -CccccccccchHHHHhccccc---hHHHHHHHH-HhcCCccccCCCcCCch-HHHHHHHHH---------hhhccccCC
Q 001709 781 -LQELTMEAARFKDEMWMGIRD---LSRKTDLIV-LVHNLSHKIPRYNYSSA-SGQQQPALS---------LLLNEAKSL 845 (1022)
Q Consensus 781 -~~~lTV~~~~~~ENI~~g~~~---~~~~v~~~L-~v~gL~~~~~r~~~~LS-GqrQRvaIA---------LLLDEPTSa 845 (1022)
-+..|| .+.+.-.... ..---.+++ -+ +|+...++++..|| |+.|||||| +|||||++-
T Consensus 412 ~~~~gtV-----~~~l~~~~~~~~~~s~~~~ei~~pl-~l~~i~e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~ 485 (591)
T COG1245 412 PDYDGTV-----EDLLRSAIRSAFGSSYFKTEIVKPL-NLEDLLERPVDELSGGELQRVAIAAALSREADLYLLDEPSAY 485 (591)
T ss_pred CCCCCcH-----HHHHHHhhhhhcccchhHHhhcCcc-chHHHHhcccccCCchhHHHHHHHHHhccccCEEEecCchhh
Confidence 445899 6666533321 112233555 44 88999999999999 999999999 999999995
Q ss_pred ChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCCcccccCcccccccCCCC
Q 001709 846 GIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCPYVMPGAVSASLSWGASG 906 (1022)
Q Consensus 846 d~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~~V~~~~~~a~~l~~~~~ 906 (1022)
||..+|..+...+.+....+..++.||.|.-++ .=|++||..
T Consensus 486 -------------LDvEqR~~vakvIRR~~e~~~kta~vVdHDi~~------~dyvsDr~i 527 (591)
T COG1245 486 -------------LDVEQRIIVAKVIRRFIENNEKTALVVDHDIYM------IDYVSDRLI 527 (591)
T ss_pred -------------ccHHHHHHHHHHHHHHHhhcCceEEEEecceeh------hhhhhceEE
Confidence 566666666666666666677788888733332 335556543
No 400
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.54 E-value=1.5e-14 Score=150.99 Aligned_cols=149 Identities=13% Similarity=0.120 Sum_probs=94.3
Q ss_pred EeeeEEEe----EEEEEcCCCCcHHHHHHHHHc-CCCCCCCCceEEEEc-ccc-c-hhhhcCceEEEcCCCCCCcccccc
Q 001709 716 KEVHFRTR----RVRLLGLEGAGKTSLFKAILG-QGKLVRTINSGNLDA-EAD-D-QEGIAGGLCYCDSAGVNLQELTME 787 (1022)
Q Consensus 716 kdVSL~V~----iVaLlGpNGAGKSTLLklL~G-L~~~~~PtsG~I~id-g~~-~-~~~lr~~IGyV~Q~~~~~~~lTV~ 787 (1022)
++|+|+.. +++|+|||||||||||++|++ |+ .+..+....+ ..+ + ....+..|+++||+..... ++
T Consensus 18 ~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~---g~~~~~~~~~~~~~~~~~~~~~~~v~~~f~~~~~~~--~~- 91 (213)
T cd03279 18 QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALY---GKTPRYGRQENLRSVFAPGEDTAEVSFTFQLGGKKY--RV- 91 (213)
T ss_pred eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEe---cCccccccchhHHHHhcCCCccEEEEEEEEECCeEE--EE-
Confidence 56677654 999999999999999999995 44 4555555443 111 1 2344567999999442222 23
Q ss_pred ccchHHHHhccccchHHHHHH-HH-HhcCCccccCCCcCCch-HHHHHHHHH-------------------hhhccccCC
Q 001709 788 AARFKDEMWMGIRDLSRKTDL-IV-LVHNLSHKIPRYNYSSA-SGQQQPALS-------------------LLLNEAKSL 845 (1022)
Q Consensus 788 ~~~~~ENI~~g~~~~~~~v~~-~L-~v~gL~~~~~r~~~~LS-GqrQRvaIA-------------------LLLDEPTSa 845 (1022)
..+. +.. .+...+. .+ .. ++.+++++++.+|| |||||++|| |||||||++
T Consensus 92 ----~r~~--gl~-~~~~~~~~~l~~g-~l~~~l~~~~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lllDEp~~~ 163 (213)
T cd03279 92 ----ERSR--GLD-YDQFTRIVLLPQG-EFDRFLARPVSTLSGGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGT 163 (213)
T ss_pred ----EEec--CCC-HHHHHHhhhhhhc-chHHHhcCCccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEeCCccc
Confidence 1111 221 1111122 23 33 56788899999999 999999996 468999996
Q ss_pred ChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCCccc
Q 001709 846 GIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCPYVM 892 (1022)
Q Consensus 846 d~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~~V~ 892 (1022)
+|+..+..+...+ ..+.....++++++|.....
T Consensus 164 -------------lD~~~~~~~~~~l-~~~~~~~~tii~itH~~~~~ 196 (213)
T cd03279 164 -------------LDPEALEAVATAL-ELIRTENRMVGVISHVEELK 196 (213)
T ss_pred -------------CCHHHHHHHHHHH-HHHHhCCCEEEEEECchHHH
Confidence 6666666655544 44444445667676544433
No 401
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=99.47 E-value=3.3e-13 Score=156.89 Aligned_cols=136 Identities=18% Similarity=0.208 Sum_probs=102.7
Q ss_pred CcccccCceeEEEEecCCCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccchhhhcC
Q 001709 693 KFIRPEGLSDVFIFCTSDFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADDQEGIAG 769 (1022)
Q Consensus 693 ~~i~~~~l~~~~~~~~~~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~~~~lr~ 769 (1022)
..|++ +++.+....++..+++|+||+|+ -+-|.||||||||+|||+|+||. +-.+|.+..-.... -.
T Consensus 432 n~i~~---e~v~l~tPt~g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLW---p~~~G~l~k~~~~~----~~ 501 (659)
T KOG0060|consen 432 NAIEF---EEVSLSTPTNGDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLW---PSTGGKLTKPTDGG----PK 501 (659)
T ss_pred ceEEe---eeeeecCCCCCceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhccc---ccCCCeEEecccCC----CC
Confidence 44554 44444444446678889999999 88899999999999999999999 66889887542110 14
Q ss_pred ceEEEcCCCCCCccccccccchHHHHhccccc--------hHHHHHHHH-HhcCCccccCCCc-----------CCch-H
Q 001709 770 GLCYCDSAGVNLQELTMEAARFKDEMWMGIRD--------LSRKTDLIV-LVHNLSHKIPRYN-----------YSSA-S 828 (1022)
Q Consensus 770 ~IGyV~Q~~~~~~~lTV~~~~~~ENI~~g~~~--------~~~~v~~~L-~v~gL~~~~~r~~-----------~~LS-G 828 (1022)
.+-|||| -+.|+-.|. ||-|.|+... ..+++...| .+ +|.|..++.. ..|| |
T Consensus 502 ~lfflPQ-rPYmt~GTL-----RdQvIYP~~~~~~~~~~~~d~~i~r~Le~v-~L~hl~~r~ggld~~~~~dW~dvLS~G 574 (659)
T KOG0060|consen 502 DLFFLPQ-RPYMTLGTL-----RDQVIYPLKAEDMDSKSASDEDILRILENV-QLGHLLEREGGLDQQVDWDWMDVLSPG 574 (659)
T ss_pred ceEEecC-CCCccccch-----hheeeccCccccccccCCCHHHHHHHHHHh-hhhhHHHHhCCCCchhhccHHhhcCHH
Confidence 5899999 666777788 9999998541 455666677 66 6666544332 3699 9
Q ss_pred HHHHHHHH---------hhhccccCC
Q 001709 829 GQQQPALS---------LLLNEAKSL 845 (1022)
Q Consensus 829 qrQRvaIA---------LLLDEPTSa 845 (1022)
+|||+++| -||||-|||
T Consensus 575 EqQRLa~ARLfy~kPk~AiLDE~TSA 600 (659)
T KOG0060|consen 575 EQQRLAFARLFYHKPKFAILDECTSA 600 (659)
T ss_pred HHHHHHHHHHHhcCCceEEeechhhh
Confidence 99999999 789999997
No 402
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.47 E-value=1.9e-13 Score=158.78 Aligned_cols=167 Identities=15% Similarity=0.169 Sum_probs=127.3
Q ss_pred EEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc-----hhhhcCceEEEcCCC---CCCc
Q 001709 714 VFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD-----QEGIAGGLCYCDSAG---VNLQ 782 (1022)
Q Consensus 714 aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~-----~~~lr~~IGyV~Q~~---~~~~ 782 (1022)
.++||||+++ ++||.|.-|||+|-|+++|.|.. ++++|+|.+||.++ ...++.+|+||+.+- ..+.
T Consensus 274 ~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~---~~~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l 350 (500)
T COG1129 274 KVRDVSFTVRAGEILGIAGLVGAGRTELARALFGAR---PASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVL 350 (500)
T ss_pred ceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCC---cCCCceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcC
Confidence 5899999999 99999999999999999999998 89999999998764 345678999999952 2378
Q ss_pred cccccccchHHHHhcccc---------c---hHHHHHHHH-HhcCCc-cccCCCcCCch-HHHHHHHHH---------hh
Q 001709 783 ELTMEAARFKDEMWMGIR---------D---LSRKTDLIV-LVHNLS-HKIPRYNYSSA-SGQQQPALS---------LL 838 (1022)
Q Consensus 783 ~lTV~~~~~~ENI~~g~~---------~---~~~~v~~~L-~v~gL~-~~~~r~~~~LS-GqrQRvaIA---------LL 838 (1022)
.++| .+|+.+... + ..+.++.+. .+ ++. .-.+..+.+|| |.||||.|| ||
T Consensus 351 ~~sI-----~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l-~Ik~~s~~~~v~~LSGGNQQKVvlarwL~~~p~vLi 424 (500)
T COG1129 351 DMSI-----AENITLASLRRFSRRGLIDRRKERALAERYIRRL-RIKTPSPEQPIGTLSGGNQQKVVLARWLATDPKVLI 424 (500)
T ss_pred CCcH-----HHheehHhhhhhccccccChHHHHHHHHHHHHhc-CcccCCccchhhcCCchhhhhHHHHHHHhcCCCEEE
Confidence 8999 999977621 1 223455555 55 654 35678999999 999999999 99
Q ss_pred hccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCCcccccCcccccccCCCCCCC
Q 001709 839 LNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCPYVMPGAVSASLSWGASGGDS 909 (1022)
Q Consensus 839 LDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~~V~~~~~~a~~l~~~~~~~~ 909 (1022)
|||||-+ +|.-.+.++- .+++.+.+....++++. ....|.+.++||+.++.
T Consensus 425 lDEPTRG-------------IDVGAK~eIy-~li~~lA~~G~ail~iS------SElpEll~~~DRIlVm~ 475 (500)
T COG1129 425 LDEPTRG-------------IDVGAKAEIY-RLIRELAAEGKAILMIS------SELPELLGLSDRILVMR 475 (500)
T ss_pred ECCCCcC-------------cccchHHHHH-HHHHHHHHCCCEEEEEe------CChHHHHhhCCEEEEEE
Confidence 9999996 5544444444 34455566555555554 55667777888887743
No 403
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.42 E-value=3.3e-13 Score=144.15 Aligned_cols=153 Identities=13% Similarity=0.027 Sum_probs=91.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccc-cc--hhh------hcCceEEEcC--CCCC-Cccccccccch
Q 001709 724 RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEA-DD--QEG------IAGGLCYCDS--AGVN-LQELTMEAARF 791 (1022)
Q Consensus 724 iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~-~~--~~~------lr~~IGyV~Q--~~~~-~~~lTV~~~~~ 791 (1022)
+++|+|||||||||||.+|.+++ .+..|++..+.. ++ ... ....+.++|+ ++.. +...++
T Consensus 24 ~~~i~G~NGsGKStll~ai~~~l---~~~~~~~r~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~----- 95 (247)
T cd03275 24 FTCIIGPNGSGKSNLMDAISFVL---GEKSSHLRSKNLKDLIYRARVGKPDSNSAYVTAVYEDDDGEEKTFRRII----- 95 (247)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh---CCCcccccccchhhhcccCccccCCCceEEEEEEEEcCCCcEEEEEEEE-----
Confidence 89999999999999999999999 777787765421 11 111 1233444444 2222 222232
Q ss_pred HHHH-hcccc---chHHHHHHHH-HhcCCcc--------------ccC--------CCcCCch-HHHHHHHHH-------
Q 001709 792 KDEM-WMGIR---DLSRKTDLIV-LVHNLSH--------------KIP--------RYNYSSA-SGQQQPALS------- 836 (1022)
Q Consensus 792 ~ENI-~~g~~---~~~~~v~~~L-~v~gL~~--------------~~~--------r~~~~LS-GqrQRvaIA------- 836 (1022)
.+.. .|... ...+.+++++ .+ |+.. ..+ +++.+|| |||||++||
T Consensus 96 ~~~~~~~~ingk~~s~~~~~~~l~~~-gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~al~~~~ 174 (247)
T cd03275 96 TGGSSSYRINGKVVSLKEYNEELEKI-NILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALALLFAIHS 174 (247)
T ss_pred ECCceEEEECCEEecHHHHHHHHHHh-CCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHHHHHHhc
Confidence 2221 11111 1345566777 65 7632 222 3348999 999999999
Q ss_pred ------hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCCcccccCcccc
Q 001709 837 ------LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCPYVMPGAVSAS 899 (1022)
Q Consensus 837 ------LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~~V~~~~~~a~ 899 (1022)
+||||||++ +|...+..+...+. .+.....++++++|...++..++..+
T Consensus 175 ~~~p~~lllDEPt~~-------------LD~~~~~~l~~~i~-~~~~~g~~vi~isH~~~~~~~~d~i~ 229 (247)
T cd03275 175 YQPAPFFVLDEVDAA-------------LDNTNVGKVASYIR-EQAGPNFQFIVISLKEEFFSKADALV 229 (247)
T ss_pred cCCCCEEEEeccccc-------------CCHHHHHHHHHHHH-HhccCCcEEEEEECCHHHHhhCCeEE
Confidence 668999996 66666666655443 33333446677775555554444443
No 404
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.38 E-value=1.7e-12 Score=135.04 Aligned_cols=128 Identities=9% Similarity=0.042 Sum_probs=80.8
Q ss_pred EEeeeEEEe--EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccc---cc--hhhhcCceEEEcCCCCCCcccccc
Q 001709 715 FKEVHFRTR--RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEA---DD--QEGIAGGLCYCDSAGVNLQELTME 787 (1022)
Q Consensus 715 LkdVSL~V~--iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~---~~--~~~lr~~IGyV~Q~~~~~~~lTV~ 787 (1022)
++++++++. +.+|+|||||||||||.+|.-.+ ..... ....+. ++ .......|.++||+...+.
T Consensus 12 ~~~~~l~f~~gl~~i~G~NGsGKStll~ai~~~l---~~~~~-~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~----- 82 (198)
T cd03276 12 HRHLQIEFGPRVNFIVGNNGSGKSAILTALTIGL---GGKAS-DTNRGSSLKDLIKDGESSAKITVTLKNQGLDA----- 82 (198)
T ss_pred eeeeEEecCCCeEEEECCCCCcHHHHHHHHHHHh---cCCcc-cccccccHHHHhhCCCCeEEEEEEEEcCCccC-----
Confidence 355666666 88999999999999999997544 22211 001121 11 1112345788888322222
Q ss_pred ccchHHHHhcccc-chHHHHHHHHHhcCCccccCCCcCCch-HHHHHHHHH-------------hhhccccCCChhHHHH
Q 001709 788 AARFKDEMWMGIR-DLSRKTDLIVLVHNLSHKIPRYNYSSA-SGQQQPALS-------------LLLNEAKSLGIPWVLA 852 (1022)
Q Consensus 788 ~~~~~ENI~~g~~-~~~~~v~~~L~v~gL~~~~~r~~~~LS-GqrQRvaIA-------------LLLDEPTSad~~~v~~ 852 (1022)
| ... ....++++++.. .+..++++.+|| |||||++|| +||||||++
T Consensus 83 ------~---~~~~~~~~~~~~~l~~---~~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~g------- 143 (198)
T cd03276 83 ------N---PLCVLSQDMARSFLTS---NKAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVF------- 143 (198)
T ss_pred ------C---cCCHHHHHHHHHHhcc---ccccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccc-------
Confidence 1 000 123455566622 566789999999 999999996 789999996
Q ss_pred HhhhhcccHHHHHHHHHHHHHHHH
Q 001709 853 ITNKFSVSAHQQRAAIDAVMQAYQ 876 (1022)
Q Consensus 853 I~~~~~ld~~~~~~~i~~ll~~~~ 876 (1022)
+|...+..+...+.+...
T Consensus 144 ------lD~~~~~~~~~~l~~~~~ 161 (198)
T cd03276 144 ------MDMVNRKISTDLLVKEAK 161 (198)
T ss_pred ------cCHHHHHHHHHHHHHHHh
Confidence 666677777766655433
No 405
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.37 E-value=1e-12 Score=151.32 Aligned_cols=164 Identities=15% Similarity=0.120 Sum_probs=116.5
Q ss_pred ceeEEEEecCCCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccchhhhcCceEEEcC
Q 001709 700 LSDVFIFCTSDFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADDQEGIAGGLCYCDS 776 (1022)
Q Consensus 700 l~~~~~~~~~~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~~~~lr~~IGyV~Q 776 (1022)
+..+.+.|+.+..+.+.+++++++ +++++|+||+||||++|++.|-. .|..|-+.+.. |.+|+|-+|
T Consensus 365 i~~V~f~y~p~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l---~~~rgi~~~~~-------r~ri~~f~Q 434 (582)
T KOG0062|consen 365 ISYVAFEYTPSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDL---TPTRGIVGRHP-------RLRIKYFAQ 434 (582)
T ss_pred EEeeeccCCCcchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccC---Ccccceeeecc-------cceecchhH
Confidence 555555555544478999999998 99999999999999999999988 89999886543 678999999
Q ss_pred CCCCCccccccccchHHHHhcccc-chHHHHHHHH-HhcCCc-cccCCCcCCch-HHHHHHHHH---------hhhcccc
Q 001709 777 AGVNLQELTMEAARFKDEMWMGIR-DLSRKTDLIV-LVHNLS-HKIPRYNYSSA-SGQQQPALS---------LLLNEAK 843 (1022)
Q Consensus 777 ~~~~~~~lTV~~~~~~ENI~~g~~-~~~~~v~~~L-~v~gL~-~~~~r~~~~LS-GqrQRvaIA---------LLLDEPT 843 (1022)
.+.-+..++|. -.|.+.-... ..++.++..+ .+ ||+ +.+.+...+|| |||-||+|| |+|||||
T Consensus 435 hhvd~l~~~v~---~vd~~~~~~pG~~~ee~r~hl~~~-Gl~g~la~~si~~LSGGQKsrvafA~~~~~~PhlLVLDEPT 510 (582)
T KOG0062|consen 435 HHVDFLDKNVN---AVDFMEKSFPGKTEEEIRRHLGSF-GLSGELALQSIASLSGGQKSRVAFAACTWNNPHLLVLDEPT 510 (582)
T ss_pred hhhhHHHHHhH---HHHHHHHhCCCCCHHHHHHHHHhc-CCCchhhhccccccCCcchhHHHHHHHhcCCCcEEEecCCC
Confidence 54445445551 0122211111 1567788888 88 997 56677789999 999999999 9999999
Q ss_pred CCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCCccccc
Q 001709 844 SLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCPYVMPG 894 (1022)
Q Consensus 844 Sad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~~V~~~ 894 (1022)
+- ||... +.++-+++..-.+.+++|.|....+..
T Consensus 511 Nh-------------LD~ds----l~AL~~Al~~F~GGVv~VSHd~~fi~~ 544 (582)
T KOG0062|consen 511 NH-------------LDRDS----LGALAKALKNFNGGVVLVSHDEEFISS 544 (582)
T ss_pred cc-------------ccHHH----HHHHHHHHHhcCCcEEEEECcHHHHhh
Confidence 94 33222 333334445556788888755555533
No 406
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.35 E-value=3.8e-12 Score=164.87 Aligned_cols=99 Identities=17% Similarity=0.090 Sum_probs=71.3
Q ss_pred ccccccccchHHHHhccccc----------hHHHHHHHH-HhcCCccc-cCCCcCCch-HHHHHHHHH------------
Q 001709 782 QELTMEAARFKDEMWMGIRD----------LSRKTDLIV-LVHNLSHK-IPRYNYSSA-SGQQQPALS------------ 836 (1022)
Q Consensus 782 ~~lTV~~~~~~ENI~~g~~~----------~~~~v~~~L-~v~gL~~~-~~r~~~~LS-GqrQRvaIA------------ 836 (1022)
...|| .|+|.++..+ ..+++ +++ .+ ||.+. .++.+.+|| |||||++||
T Consensus 761 ~~~tI-----~evL~mtv~ea~~~f~~~~~i~~~l-~~L~~v-GL~~l~l~q~~~tLSGGE~QRV~LAraL~~~~~~P~L 833 (1809)
T PRK00635 761 KGKNI-----ADILEMTAYEAEKFFLDEPSIHEKI-HALCSL-GLDYLPLGRPLSSLSGGEIQRLKLAYELLAPSKKPTL 833 (1809)
T ss_pred CCCCH-----HHHHHcCHHHHHHcccChHHHHHHH-HHHHHc-CCcchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCE
Confidence 34566 8888776542 23344 466 77 99886 799999999 999999999
Q ss_pred hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCCcccccCcccccc
Q 001709 837 LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCPYVMPGAVSASLS 901 (1022)
Q Consensus 837 LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~~V~~~~~~a~~l 901 (1022)
|||||||++ +|..++..+...+.+. .+...++++++|-..++..++..+.+
T Consensus 834 LILDEPTsG-------------LD~~~~~~Ll~lL~~L-~~~G~TVIiIsHdl~~i~~aDrVi~L 884 (1809)
T PRK00635 834 YVLDEPTTG-------------LHTHDIKALIYVLQSL-THQGHTVVIIEHNMHVVKVADYVLEL 884 (1809)
T ss_pred EEEeCCCCC-------------CCHHHHHHHHHHHHHH-HhcCCEEEEEeCCHHHHHhCCEEEEE
Confidence 899999997 6777777777666443 44455777776655555666666666
No 407
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.31 E-value=4.9e-12 Score=157.39 Aligned_cols=81 Identities=16% Similarity=0.068 Sum_probs=60.7
Q ss_pred HHHHH-HhcCCcc-ccCCCcCCch-HHHHHHHHH------------hhhccccCCChhHHHHHhhhhcccHHHHHHHHHH
Q 001709 806 TDLIV-LVHNLSH-KIPRYNYSSA-SGQQQPALS------------LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDA 870 (1022)
Q Consensus 806 v~~~L-~v~gL~~-~~~r~~~~LS-GqrQRvaIA------------LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ 870 (1022)
..+++ .+ ||.. .+++.+.+|| ||+||++|| +||||||++ +|..++..++..
T Consensus 810 ~l~~L~~v-gL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsG-------------LD~~~~~~L~~~ 875 (943)
T PRK00349 810 KLQTLVDV-GLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTG-------------LHFEDIRKLLEV 875 (943)
T ss_pred HHHHHHHC-CCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCC-------------CCHHHHHHHHHH
Confidence 34556 77 8876 5799999999 999999999 899999996 777777777766
Q ss_pred HHHHHHhCCCeEEEEecCCcccccCcccccc
Q 001709 871 VMQAYQASPSTTEVINSCPYVMPGAVSASLS 901 (1022)
Q Consensus 871 ll~~~~~t~~~~vVv~~~~~V~~~~~~a~~l 901 (1022)
+.+ +.....++++++|...++..++..+.+
T Consensus 876 L~~-l~~~G~TVIiitH~~~~i~~aD~ii~L 905 (943)
T PRK00349 876 LHR-LVDKGNTVVVIEHNLDVIKTADWIIDL 905 (943)
T ss_pred HHH-HHhCCCEEEEEecCHHHHHhCCEEEEe
Confidence 544 444556777777666665556665555
No 408
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.29 E-value=6.6e-12 Score=130.08 Aligned_cols=118 Identities=13% Similarity=0.090 Sum_probs=78.7
Q ss_pred EEeeeEEEe----EEEEEcCCCCcHHHHHHHHH--------cCCCCCCCCceEEEEccccchhhhcCceEEEcCCCCCCc
Q 001709 715 FKEVHFRTR----RVRLLGLEGAGKTSLFKAIL--------GQGKLVRTINSGNLDAEADDQEGIAGGLCYCDSAGVNLQ 782 (1022)
Q Consensus 715 LkdVSL~V~----iVaLlGpNGAGKSTLLklL~--------GL~~~~~PtsG~I~idg~~~~~~lr~~IGyV~Q~~~~~~ 782 (1022)
+-++||++. +++|.||||||||||||+|+ |++ -|.... ..++|+.|. +
T Consensus 17 ~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~---vp~~~~-------------~~~~~~~~~---~- 76 (200)
T cd03280 17 VVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLP---IPAAEG-------------SSLPVFENI---F- 76 (200)
T ss_pred eEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCC---cccccc-------------ccCcCccEE---E-
Confidence 456788887 69999999999999999998 444 342111 123444440 0
Q ss_pred cccccccchHHHHhccccchHHHHHHHHHhcCCccccCCCcCCch-HHHHHHHHH--------hhhccccCCChhHHHHH
Q 001709 783 ELTMEAARFKDEMWMGIRDLSRKTDLIVLVHNLSHKIPRYNYSSA-SGQQQPALS--------LLLNEAKSLGIPWVLAI 853 (1022)
Q Consensus 783 ~lTV~~~~~~ENI~~g~~~~~~~v~~~L~v~gL~~~~~r~~~~LS-GqrQRvaIA--------LLLDEPTSad~~~v~~I 853 (1022)
+. + +..+.+++...++| ||+|+..|+ +||||||++
T Consensus 77 --~~-------------------------l-g~~~~l~~~~s~fs~g~~~~~~i~~~~~~p~llllDEp~~g-------- 120 (200)
T cd03280 77 --AD-------------------------I-GDEQSIEQSLSTFSSHMKNIARILQHADPDSLVLLDELGSG-------- 120 (200)
T ss_pred --Ee-------------------------c-CchhhhhcCcchHHHHHHHHHHHHHhCCCCcEEEEcCCCCC--------
Confidence 11 1 33344566778999 999999998 999999997
Q ss_pred hhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCCcccc
Q 001709 854 TNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCPYVMP 893 (1022)
Q Consensus 854 ~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~~V~~ 893 (1022)
+|...+..+...+++.+.....++++++|...+..
T Consensus 121 -----lD~~~~~~i~~~~l~~l~~~~~~vi~~tH~~~l~~ 155 (200)
T cd03280 121 -----TDPVEGAALAIAILEELLERGALVIATTHYGELKA 155 (200)
T ss_pred -----CCHHHHHHHHHHHHHHHHhcCCEEEEECCHHHHHH
Confidence 66667776665555665554446666665444433
No 409
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.29 E-value=3.2e-12 Score=134.15 Aligned_cols=176 Identities=14% Similarity=0.089 Sum_probs=117.9
Q ss_pred CCCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCC-CCCCCceEEEEccccc----hhhh----cCceEEEcC
Q 001709 709 SDFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGK-LVRTINSGNLDAEADD----QEGI----AGGLCYCDS 776 (1022)
Q Consensus 709 ~~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~-~~~PtsG~I~idg~~~----~~~l----r~~IGyV~Q 776 (1022)
.+..+++++||+++. +-||||.||||||-..|+|+|..+ -|..+.-+..++..++ +.+. .+.|+|+||
T Consensus 17 qG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~RRk~ig~~isMIFQ 96 (330)
T COG4170 17 QGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQ 96 (330)
T ss_pred CCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHHhhhhhccchhhhhc
Confidence 345679999999998 999999999999999999999871 1122334444443222 2332 346889999
Q ss_pred CCCC--CccccccccchHHHHhcccc---------chHHHHHHHH-HhcCCcc---ccCCCcCCch-HHHHHHHHH----
Q 001709 777 AGVN--LQELTMEAARFKDEMWMGIR---------DLSRKTDLIV-LVHNLSH---KIPRYNYSSA-SGQQQPALS---- 836 (1022)
Q Consensus 777 ~~~~--~~~lTV~~~~~~ENI~~g~~---------~~~~~v~~~L-~v~gL~~---~~~r~~~~LS-GqrQRvaIA---- 836 (1022)
++.. -|.-+| +.|+.+||-+-.. -.++++-++| .| |+.+ ....||.+|- |+-|+|.||
T Consensus 97 eP~sCLDPS~~i-G~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrV-GIKdHkDIM~SYP~ElTeGE~QKVMIA~A~A 174 (330)
T COG4170 97 EPQSCLDPSERV-GRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRV-GIKDHKDIMRSYPYELTEGECQKVMIAIALA 174 (330)
T ss_pred CchhhcChHHHH-HHHHHhhCccccccchHhhhhchhHHHHHHHHHHh-ccccHHHHHHhCcchhccCcceeeeeehhhc
Confidence 5544 355666 6788888843221 1567788888 99 9965 4568999999 999999888
Q ss_pred -----hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCCcccccCcccccccCCC
Q 001709 837 -----LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCPYVMPGAVSASLSWGAS 905 (1022)
Q Consensus 837 -----LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~~V~~~~~~a~~l~~~~ 905 (1022)
||.||||++ ++..++..+...+.+ +....++++++.+ |+......|+++.
T Consensus 175 nqPrLLIADEPTN~-------------~e~~Tq~QifRLLs~-mNQn~~TtILL~s-----~Dl~~is~W~d~i 229 (330)
T COG4170 175 NQPRLLIADEPTNS-------------MEPTTQAQIFRLLSR-LNQNSNTTILLIS-----HDLQMISQWADKI 229 (330)
T ss_pred cCCceEeccCCCcc-------------cCccHHHHHHHHHHH-hhccCCceEEEEc-----ccHHHHHHHhhhe
Confidence 999999996 444455544444433 3334466666532 3333334455544
No 410
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=99.28 E-value=8e-12 Score=144.00 Aligned_cols=119 Identities=19% Similarity=0.252 Sum_probs=91.1
Q ss_pred CCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccchhhhcCceEEEcCCCCCCccccc
Q 001709 710 DFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADDQEGIAGGLCYCDSAGVNLQELTM 786 (1022)
Q Consensus 710 ~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~~~~lr~~IGyV~Q~~~~~~~lTV 786 (1022)
.+..++..++|+|+ -+-|+||||||||+|+|+|.||. +...|...+ + .+..|-|+|| -+.+.-.|.
T Consensus 493 ~~~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLW---Pvy~g~L~~-----P--~~~~mFYIPQ-RPYms~gtl 561 (728)
T KOG0064|consen 493 AGDVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLW---PVYNGLLSI-----P--RPNNIFYIPQ-RPYMSGGTL 561 (728)
T ss_pred CcceeecceeEEecCCceEEEECCCCccHHHHHHHHhccC---cccCCeeec-----C--CCcceEeccC-CCccCcCcc
Confidence 34558899999999 88899999999999999999999 555554432 1 1345999999 444444566
Q ss_pred cccchHHHHhccccc--------hHHHHHHHH-HhcCCccccCCCcC---------Cch-HHHHHHHHH---------hh
Q 001709 787 EAARFKDEMWMGIRD--------LSRKTDLIV-LVHNLSHKIPRYNY---------SSA-SGQQQPALS---------LL 838 (1022)
Q Consensus 787 ~~~~~~ENI~~g~~~--------~~~~v~~~L-~v~gL~~~~~r~~~---------~LS-GqrQRvaIA---------LL 838 (1022)
+|-|-|+-.. .++....+| .| .|++.+.+-.+ -|| |+|||+++| -+
T Consensus 562 -----RDQIIYPdS~e~~~~kg~~d~dL~~iL~~v-~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm~yHrPkyal 635 (728)
T KOG0064|consen 562 -----RDQIIYPDSSEQMKRKGYTDQDLEAILDIV-HLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARMFYHRPKYAL 635 (728)
T ss_pred -----cceeecCCcHHHHHhcCCCHHHHHHHHHHh-hHHHHHHhccChhhhccHHhhccchHHHHHHHHHHHhcCcchhh
Confidence 8888887541 345566777 66 77777666553 699 999999999 89
Q ss_pred hccccCC
Q 001709 839 LNEAKSL 845 (1022)
Q Consensus 839 LDEPTSa 845 (1022)
|||-|||
T Consensus 636 LDEcTsA 642 (728)
T KOG0064|consen 636 LDECTSA 642 (728)
T ss_pred hhhhhcc
Confidence 9999997
No 411
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=99.28 E-value=2.1e-11 Score=127.86 Aligned_cols=137 Identities=20% Similarity=0.327 Sum_probs=91.6
Q ss_pred CCcccccCceeEEEEecCCCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc-h-hh
Q 001709 692 EKFIRPEGLSDVFIFCTSDFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD-Q-EG 766 (1022)
Q Consensus 692 ~~~i~~~~l~~~~~~~~~~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~-~-~~ 766 (1022)
+..|++.++. |.|. ...+++-|+|++++ +.-|+|.||||||||||+|+|-. -.-.|.|.+.|.+. . .+
T Consensus 11 ~~aievsgl~---f~y~-~~dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKh---mv~~~~v~VlgrsaFhDt~ 83 (291)
T KOG2355|consen 11 DFAIEVSGLQ---FKYK-VSDPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKH---MVGGGVVQVLGRSAFHDTS 83 (291)
T ss_pred cceEEEeccE---Eecc-cCCceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcc---cccCCeEEEcCcCcccccc
Confidence 3456655555 3333 33489999999999 89999999999999999999977 45558999987553 1 11
Q ss_pred h--cCceEEEcCC---------CCCCc-cccccccchHHHHhccccc-hHHHHHHHH-HhcCCccccCCCcCCch-HHHH
Q 001709 767 I--AGGLCYCDSA---------GVNLQ-ELTMEAARFKDEMWMGIRD-LSRKTDLIV-LVHNLSHKIPRYNYSSA-SGQQ 831 (1022)
Q Consensus 767 l--r~~IGyV~Q~---------~~~~~-~lTV~~~~~~ENI~~g~~~-~~~~v~~~L-~v~gL~~~~~r~~~~LS-GqrQ 831 (1022)
+ ....+|+--. +..++ ++++ +.+.|+... .-++-++++ .+ .+. +.-+.+.+| |||+
T Consensus 84 l~~Sgdl~YLGgeW~~~~~~agevplq~D~sa------e~mifgV~g~dp~Rre~LI~iL-DId--l~WRmHkvSDGqrR 154 (291)
T KOG2355|consen 84 LESSGDLSYLGGEWSKTVGIAGEVPLQGDISA------EHMIFGVGGDDPERREKLIDIL-DID--LRWRMHKVSDGQRR 154 (291)
T ss_pred ccccCceeEecccccccccccccccccccccH------HHHHhhccCCChhHhhhhhhhe-ecc--ceEEEeeccccchh
Confidence 1 2334454331 01111 2333 445555542 335555666 33 443 557788999 9999
Q ss_pred HHHHH---------hhhccccC
Q 001709 832 QPALS---------LLLNEAKS 844 (1022)
Q Consensus 832 RvaIA---------LLLDEPTS 844 (1022)
||.|+ |||||-|-
T Consensus 155 RVQicMGLL~PfkVLLLDEVTV 176 (291)
T KOG2355|consen 155 RVQICMGLLKPFKVLLLDEVTV 176 (291)
T ss_pred hhHHHHhcccceeEEEeeeeEe
Confidence 99999 99999997
No 412
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.25 E-value=7.9e-12 Score=130.42 Aligned_cols=129 Identities=16% Similarity=0.123 Sum_probs=85.3
Q ss_pred eeEEEeeeEEEe-EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccchhhhcCceEEEcCCCCCCccccccccc
Q 001709 712 TTVFKEVHFRTR-RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADDQEGIAGGLCYCDSAGVNLQELTMEAAR 790 (1022)
Q Consensus 712 ~~aLkdVSL~V~-iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~~~~lr~~IGyV~Q~~~~~~~lTV~~~~ 790 (1022)
..+++|++|+.. +++|+||||||||||+|+|+|.. . +...|..++. -.+++|....|+.+|+
T Consensus 14 ~~v~n~i~l~~g~~~~ltGpNg~GKSTllr~i~~~~---~-----l~~~G~~v~a-----~~~~~q~~~l~~~~~~---- 76 (199)
T cd03283 14 KRVANDIDMEKKNGILITGSNMSGKSTFLRTIGVNV---I-----LAQAGAPVCA-----SSFELPPVKIFTSIRV---- 76 (199)
T ss_pred CeecceEEEcCCcEEEEECCCCCChHHHHHHHHHHH---H-----HHHcCCEEec-----CccCcccceEEEeccc----
Confidence 468999999998 99999999999999999999976 2 1123333211 1477783334889999
Q ss_pred hHHHHhccccc---hHHHHHHHH-HhcCCccccCCCcCCchHHHHHHHHHhhhccccCCChhHHHHHhhhhcccHHHHHH
Q 001709 791 FKDEMWMGIRD---LSRKTDLIV-LVHNLSHKIPRYNYSSASGQQQPALSLLLNEAKSLGIPWVLAITNKFSVSAHQQRA 866 (1022)
Q Consensus 791 ~~ENI~~g~~~---~~~~v~~~L-~v~gL~~~~~r~~~~LSGqrQRvaIALLLDEPTSad~~~v~~I~~~~~ld~~~~~~ 866 (1022)
.||+.++... ..+++.+++ .+ ++ ....+ +||||||++ +|..++..
T Consensus 77 -~d~l~~~~s~~~~e~~~~~~iL~~~-~~------~~p~l----------lllDEp~~g-------------lD~~~~~~ 125 (199)
T cd03283 77 -SDDLRDGISYFYAELRRLKEIVEKA-KK------GEPVL----------FLLDEIFKG-------------TNSRERQA 125 (199)
T ss_pred -hhccccccChHHHHHHHHHHHHHhc-cC------CCCeE----------EEEecccCC-------------CCHHHHHH
Confidence 9999887642 224566666 55 42 22233 899999996 56666655
Q ss_pred HHHHHHHHHHhCCCeEEEEecC
Q 001709 867 AIDAVMQAYQASPSTTEVINSC 888 (1022)
Q Consensus 867 ~i~~ll~~~~~t~~~~vVv~~~ 888 (1022)
+...+++.+.....++++++|.
T Consensus 126 l~~~ll~~l~~~~~tiiivTH~ 147 (199)
T cd03283 126 ASAAVLKFLKNKNTIGIISTHD 147 (199)
T ss_pred HHHHHHHHHHHCCCEEEEEcCc
Confidence 5444445444444455555533
No 413
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.21 E-value=2.8e-11 Score=140.29 Aligned_cols=130 Identities=17% Similarity=0.159 Sum_probs=81.0
Q ss_pred CCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEc--cccchhhhcCceEEEcCCCCCCccc
Q 001709 710 DFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDA--EADDQEGIAGGLCYCDSAGVNLQEL 784 (1022)
Q Consensus 710 ~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~id--g~~~~~~lr~~IGyV~Q~~~~~~~l 784 (1022)
.+.+.++|++|++. .+||+|+|||||||+|++|.|-. .|..-++.+- ...+......-+-+|++ ... ..
T Consensus 86 ~g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e---~P~p~~~d~y~ls~e~~ps~~~av~~v~~-~~~--~e 159 (614)
T KOG0927|consen 86 HGVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGRE---VPIPEHIDFYLLSREIEPSEKQAVQAVVM-ETD--HE 159 (614)
T ss_pred CCceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCC---CCCCcccchhhhcccCCCchHHHHHHHhh-hhH--HH
Confidence 56789999999998 99999999999999999999998 7866555443 11110010111112221 000 00
Q ss_pred cccccchHHHHhcccc--------------------chHHHHHHHH-HhcCCccccCCCcCCch-HHHHHHHHH------
Q 001709 785 TMEAARFKDEMWMGIR--------------------DLSRKTDLIV-LVHNLSHKIPRYNYSSA-SGQQQPALS------ 836 (1022)
Q Consensus 785 TV~~~~~~ENI~~g~~--------------------~~~~~v~~~L-~v~gL~~~~~r~~~~LS-GqrQRvaIA------ 836 (1022)
...-+.+.|++.-... ..+.++-.+| .+-.+.+..++....|| |+|.|++||
T Consensus 160 ~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~SgGwrmR~aLAr~Lf~k 239 (614)
T KOG0927|consen 160 RKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDLSGGWRMRAALARALFQK 239 (614)
T ss_pred HHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhccCchHHHHHHHHHHHhcC
Confidence 0000112222222110 1233444455 44134678999999999 999999999
Q ss_pred ---hhhccccCC
Q 001709 837 ---LLLNEAKSL 845 (1022)
Q Consensus 837 ---LLLDEPTSa 845 (1022)
|||||||+.
T Consensus 240 P~LLLLDEPtnh 251 (614)
T KOG0927|consen 240 PDLLLLDEPTNH 251 (614)
T ss_pred CCEEEecCCccC
Confidence 999999996
No 414
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.19 E-value=3.8e-11 Score=150.02 Aligned_cols=171 Identities=18% Similarity=0.211 Sum_probs=121.3
Q ss_pred CeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc-hhhhcCceEEEcCCCCCCccccc
Q 001709 711 FTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD-QEGIAGGLCYCDSAGVNLQELTM 786 (1022)
Q Consensus 711 ~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~-~~~lr~~IGyV~Q~~~~~~~lTV 786 (1022)
...+|+|+|.-++ .+-++||.||||||||++|+|-++-..-..|+|.+||.+. .-..++.++|+.|++..++.|||
T Consensus 127 ~~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTV 206 (1391)
T KOG0065|consen 127 KIQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTV 206 (1391)
T ss_pred cceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEE
Confidence 3579999999998 8999999999999999999997622223357999999776 11227889999997777999999
Q ss_pred cccchHHHHhcccc--------c---hHH----HHHHHH-HhcCCccccC-----CCcCCch-HHHHHHHHH--------
Q 001709 787 EAARFKDEMWMGIR--------D---LSR----KTDLIV-LVHNLSHKIP-----RYNYSSA-SGQQQPALS-------- 836 (1022)
Q Consensus 787 ~~~~~~ENI~~g~~--------~---~~~----~v~~~L-~v~gL~~~~~-----r~~~~LS-GqrQRvaIA-------- 836 (1022)
+|-+.|..+ + .++ .++.++ .+ ||++-+| ...+-.| |||+||.||
T Consensus 207 -----reTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkil-GL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~ 280 (1391)
T KOG0065|consen 207 -----RETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKIL-GLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPAS 280 (1391)
T ss_pred -----eehhhHHHhccCCccccccccHHHHHHHHHHHHHHHh-CchhhccceecccccccccCcccceeeeeeeeecCcc
Confidence 999998765 1 122 355666 66 9987655 4455799 999999999
Q ss_pred -hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEE---ecCCcccccCcccccc
Q 001709 837 -LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVI---NSCPYVMPGAVSASLS 901 (1022)
Q Consensus 837 -LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv---~~~~~V~~~~~~a~~l 901 (1022)
+++||+|.+ +|..+--+.+..+.+..... +++.+| .-.+.+.+.+|.+..+
T Consensus 281 ~~~~De~t~G-------------LDSsTal~iik~lr~~a~~~-~~t~~vsi~Q~s~~~~~lFD~v~lL 335 (1391)
T KOG0065|consen 281 ILFWDEITRG-------------LDSSTAFQIIKALRQLAHIT-GATALVSILQPSPEIYDLFDDVILL 335 (1391)
T ss_pred eeeeeccccc-------------ccHHHHHHHHHHHHHHHhhh-cceEEEEeccCChHHHHhhhheeee
Confidence 999999996 55555555554444433333 344444 3444455554444433
No 415
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.17 E-value=2.2e-10 Score=132.19 Aligned_cols=186 Identities=17% Similarity=0.177 Sum_probs=132.8
Q ss_pred CCcccccCceeEEEEecCCCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc-----
Q 001709 692 EKFIRPEGLSDVFIFCTSDFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD----- 763 (1022)
Q Consensus 692 ~~~i~~~~l~~~~~~~~~~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~----- 763 (1022)
...+++++|+ +.. ..+.+.+++|||+|+ ++||.|-.|-|.+.|+.+|+|+. +|.+|+|.++|.++
T Consensus 255 ~~vL~V~~L~---v~~-~~~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr---~~~~G~I~l~G~~v~~~~~ 327 (501)
T COG3845 255 EVVLEVEDLS---VKD-RRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLR---KPASGRILLNGKDVLGRLS 327 (501)
T ss_pred CeEEEEeeeE---eec-CCCCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCC---ccCCceEEECCEeccccCC
Confidence 4456655555 332 234678999999999 99999999999999999999999 89999999998662
Q ss_pred -hhhhcCceEEEcCCCC---CCccccccccchHHHHhccccc--------------hHHHHHHHH-HhcCCc-cccCCCc
Q 001709 764 -QEGIAGGLCYCDSAGV---NLQELTMEAARFKDEMWMGIRD--------------LSRKTDLIV-LVHNLS-HKIPRYN 823 (1022)
Q Consensus 764 -~~~lr~~IGyV~Q~~~---~~~~lTV~~~~~~ENI~~g~~~--------------~~~~v~~~L-~v~gL~-~~~~r~~ 823 (1022)
....+.+++|||.+-. ..+.+|+ .||+.++... ..+.+.+++ .+ ++. .-...+.
T Consensus 328 ~~~~r~~G~~~VPedR~~~Glv~~~sl-----~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~f-dVr~~~~~~~a 401 (501)
T COG3845 328 PRERRRLGLAYVPEDRHGHGLVLDLSL-----AENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEF-DVRAPSPDAPA 401 (501)
T ss_pred HHHHHhcCCccCChhhccCccccCccH-----HHHhhhhhccccccccccccCHHHHHHHHHHHHHHc-CccCCCCCcch
Confidence 3334578999999531 2577999 9999875431 344566666 66 554 3455678
Q ss_pred CCch-HHHHHHHHH---------hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCCcccc
Q 001709 824 YSSA-SGQQQPALS---------LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCPYVMP 893 (1022)
Q Consensus 824 ~~LS-GqrQRvaIA---------LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~~V~~ 893 (1022)
.+|| |.|||+-|| ||+.+||-+ +|.-....+-..+++ .+.....++++. .
T Consensus 402 ~~LSGGNqQK~IlaREl~~~p~lLI~~qPTrG-------------LDvgA~~~I~~~l~e-~r~~G~AVLLiS------~ 461 (501)
T COG3845 402 RSLSGGNQQKLILARELARRPDLLIAAQPTRG-------------LDVGAIEFIHERLLE-LRDAGKAVLLIS------E 461 (501)
T ss_pred hhcCCcceehhhhhhhhccCCCEEEEcCCCcc-------------ccHHHHHHHHHHHHH-HHhcCCEEEEEe------h
Confidence 8999 999999999 999999986 333222222222222 233334555554 6
Q ss_pred cCcccccccCCCCCCCC
Q 001709 894 GAVSASLSWGASGGDSD 910 (1022)
Q Consensus 894 ~~~~a~~l~~~~~~~~~ 910 (1022)
+.||.+.++||..+..+
T Consensus 462 dLDEil~lsDrIaVi~~ 478 (501)
T COG3845 462 DLDEILELSDRIAVIYE 478 (501)
T ss_pred hHHHHHHhhheeeeeeC
Confidence 78888889998887553
No 416
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.16 E-value=9e-11 Score=123.72 Aligned_cols=57 Identities=7% Similarity=0.057 Sum_probs=39.0
Q ss_pred cccCCCcCCch-HHHHHHHHH-------------hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCC-e
Q 001709 817 HKIPRYNYSSA-SGQQQPALS-------------LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPS-T 881 (1022)
Q Consensus 817 ~~~~r~~~~LS-GqrQRvaIA-------------LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~-~ 881 (1022)
...+..+.+|| ||||++.+| +||||||++ +|...+..+...+.+....... +
T Consensus 118 ~~~~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~-------------LD~~~~~~i~~~l~~~~~~~g~~~ 184 (213)
T cd03277 118 QLQELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQG-------------MDPTNERKVFDMLVETACKEGTSQ 184 (213)
T ss_pred CccccchhhccccHHHHHHHHHHHHHHhccCCCEEEEeccccc-------------CCHHHHHHHHHHHHHHhhcCCCce
Confidence 34577889999 999998754 899999996 6767777766655444332133 3
Q ss_pred EEEEe
Q 001709 882 TEVIN 886 (1022)
Q Consensus 882 ~vVv~ 886 (1022)
+++++
T Consensus 185 viiit 189 (213)
T cd03277 185 YFLIT 189 (213)
T ss_pred EEEEc
Confidence 45553
No 417
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.16 E-value=1.5e-11 Score=140.31 Aligned_cols=181 Identities=17% Similarity=0.159 Sum_probs=109.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEc-----------cccc---hhhhc-C--ceEEEcCCCCC----Cc
Q 001709 724 RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDA-----------EADD---QEGIA-G--GLCYCDSAGVN----LQ 782 (1022)
Q Consensus 724 iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~id-----------g~~~---~~~lr-~--~IGyV~Q~~~~----~~ 782 (1022)
++||+||||-||||.+|+|+|.+ .|+=|+..=. |+.+ .+.+. . ++..-+| .+- ..
T Consensus 102 V~GilG~NGiGKsTalkILaGel---~PNLG~~~~pp~wdeVi~~FrGtELq~YF~~l~~g~~r~v~K~Q-YVd~iPk~~ 177 (591)
T COG1245 102 VVGILGPNGIGKSTALKILAGEL---KPNLGRYEDPPSWDEVIKRFRGTELQNYFKKLYEGELRAVHKPQ-YVDLIPKVV 177 (591)
T ss_pred EEEEEcCCCccHHHHHHHHhCcc---ccCCCCCCCCCCHHHHHHHhhhhHHHHHHHHHHcCCcceecchH-HHHHHHHHh
Confidence 99999999999999999999999 9998855321 1111 11111 1 1222233 111 12
Q ss_pred cccccccchHHHHhccccchHHHHHHHH-HhcCCccccCCCcCCch-HHHHHHHHH---------hhhccccCCChhHHH
Q 001709 783 ELTMEAARFKDEMWMGIRDLSRKTDLIV-LVHNLSHKIPRYNYSSA-SGQQQPALS---------LLLNEAKSLGIPWVL 851 (1022)
Q Consensus 783 ~lTV~~~~~~ENI~~g~~~~~~~v~~~L-~v~gL~~~~~r~~~~LS-GqrQRvaIA---------LLLDEPTSad~~~v~ 851 (1022)
..+| .|-+.-. +..-..++++ .+ +|....+|.+.+|| |+-||+||| +++|||||-
T Consensus 178 KG~v-----~elLk~~--de~g~~devve~l-~L~nvl~r~v~~LSGGELQr~aIaa~l~rdADvY~FDEpsSy------ 243 (591)
T COG1245 178 KGKV-----GELLKKV--DERGKFDEVVERL-GLENVLDRDVSELSGGELQRVAIAAALLRDADVYFFDEPSSY------ 243 (591)
T ss_pred cchH-----HHHHHhh--hhcCcHHHHHHHh-cchhhhhhhhhhcCchHHHHHHHHHHHhccCCEEEEcCCccc------
Confidence 2344 4333211 1224578888 88 99999999999999 999999999 999999995
Q ss_pred HHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCCcccccCcccccccCCCCCCCCCCCCCceeeecc------ccc
Q 001709 852 AITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCPYVMPGAVSASLSWGASGGDSDGRSGAQKLLHAP------INL 925 (1022)
Q Consensus 852 ~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~~V~~~~~~a~~l~~~~~~~~~~~~~~~~i~~~p------i~l 925 (1022)
||..+|..+...+ +.+.+....++||.|.--|+. |++|-+-. .-+.....+++..| ||.
T Consensus 244 -------LDi~qRl~~ar~I-rel~~~~k~ViVVEHDLavLD------~lsD~vhI-~YG~pg~YGvvs~p~svr~gIN~ 308 (591)
T COG1245 244 -------LDIRQRLNAARVI-RELAEDGKYVIVVEHDLAVLD------YLSDFVHI-LYGEPGVYGVVSKPKSVRVGINE 308 (591)
T ss_pred -------ccHHHHHHHHHHH-HHHhccCCeEEEEechHHHHH------HhhheeEE-EecCCccceEeccchHHHHHHHH
Confidence 5555665555555 344444567777764433332 23333211 00022333444433 566
Q ss_pred ccCCCCCCCCcc
Q 001709 926 VWRPFQRKDNIL 937 (1022)
Q Consensus 926 ~~~pf~~~~~~~ 937 (1022)
+...+.+.+|++
T Consensus 309 yL~Gyl~~EN~R 320 (591)
T COG1245 309 YLKGYLPEENVR 320 (591)
T ss_pred HHhccCchhccc
Confidence 666666666644
No 418
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.14 E-value=9.1e-11 Score=145.98 Aligned_cols=81 Identities=15% Similarity=0.064 Sum_probs=60.2
Q ss_pred HHHHH-HhcCCcc-ccCCCcCCch-HHHHHHHHH------------hhhccccCCChhHHHHHhhhhcccHHHHHHHHHH
Q 001709 806 TDLIV-LVHNLSH-KIPRYNYSSA-SGQQQPALS------------LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDA 870 (1022)
Q Consensus 806 v~~~L-~v~gL~~-~~~r~~~~LS-GqrQRvaIA------------LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ 870 (1022)
..+++ .+ ||.. ..++.+.+|| ||+||++|| +||||||++ +|..++..+...
T Consensus 808 ~l~~L~~~-gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsg-------------LD~~~~~~L~~~ 873 (924)
T TIGR00630 808 KLQTLCDV-GLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTG-------------LHFDDIKKLLEV 873 (924)
T ss_pred HHHHHHHc-CCCchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCC-------------CCHHHHHHHHHH
Confidence 34556 66 8876 4799999999 999999999 899999997 777777777766
Q ss_pred HHHHHHhCCCeEEEEecCCcccccCcccccc
Q 001709 871 VMQAYQASPSTTEVINSCPYVMPGAVSASLS 901 (1022)
Q Consensus 871 ll~~~~~t~~~~vVv~~~~~V~~~~~~a~~l 901 (1022)
+.+ +.....++++++|...++..++..+.+
T Consensus 874 L~~-l~~~G~TVIvi~H~~~~i~~aD~ii~L 903 (924)
T TIGR00630 874 LQR-LVDQGNTVVVIEHNLDVIKTADYIIDL 903 (924)
T ss_pred HHH-HHhCCCEEEEEeCCHHHHHhCCEEEEe
Confidence 644 444456777777666666556655555
No 419
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.13 E-value=1.1e-10 Score=134.95 Aligned_cols=130 Identities=18% Similarity=0.127 Sum_probs=78.6
Q ss_pred CcccccCceeEEEEecCCCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccchhhhcC
Q 001709 693 KFIRPEGLSDVFIFCTSDFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADDQEGIAG 769 (1022)
Q Consensus 693 ~~i~~~~l~~~~~~~~~~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~~~~lr~ 769 (1022)
..|+.++|+ +++ +++.+|++-+|++. +.||+|+||+|||||||+|+.-...--|+.-++. .
T Consensus 79 ~Di~~~~fd---La~--G~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~~~v~~f~veqE~~-----------g 142 (582)
T KOG0062|consen 79 KDIHIDNFD---LAY--GGKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIANGQVSGFHVEQEVR-----------G 142 (582)
T ss_pred cceeeeeee---eee--cchhhhcCCceeeecccccceeCCCCCcHHHHHHHHHhcCcCccCchhhee-----------c
Confidence 335544444 343 57789999999987 9999999999999999999871100012221221 1
Q ss_pred ceEEEcCCCCCCccccccccchHHHHhc----ccc-chHHHHHHHH-HhcCCc-cccCCCcCCch-HHHHHHHHH-----
Q 001709 770 GLCYCDSAGVNLQELTMEAARFKDEMWM----GIR-DLSRKTDLIV-LVHNLS-HKIPRYNYSSA-SGQQQPALS----- 836 (1022)
Q Consensus 770 ~IGyV~Q~~~~~~~lTV~~~~~~ENI~~----g~~-~~~~~v~~~L-~v~gL~-~~~~r~~~~LS-GqrQRvaIA----- 836 (1022)
.--...| ...-.++++ .+.|.- ... ..++..+.+| -+ |.. +...++..+|| |=|.|++||
T Consensus 143 ~~t~~~~-~~l~~D~~~-----~dfl~~e~~l~~~~~l~ei~~~~L~gl-GFt~emq~~pt~slSGGWrMrlaLARAlf~ 215 (582)
T KOG0062|consen 143 DDTEALQ-SVLESDTER-----LDFLAEEKELLAGLTLEEIYDKILAGL-GFTPEMQLQPTKSLSGGWRMRLALARALFA 215 (582)
T ss_pred cchHHHh-hhhhccHHH-----HHHHHhhhhhhccchHHHHHHHHHHhC-CCCHHHHhccccccCcchhhHHHHHHHHhc
Confidence 0001111 111111222 222211 111 1233344466 66 775 57788999999 999999999
Q ss_pred ----hhhccccCC
Q 001709 837 ----LLLNEAKSL 845 (1022)
Q Consensus 837 ----LLLDEPTSa 845 (1022)
|||||||+.
T Consensus 216 ~pDlLLLDEPTNh 228 (582)
T KOG0062|consen 216 KPDLLLLDEPTNH 228 (582)
T ss_pred CCCEEeecCCccc
Confidence 999999995
No 420
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.13 E-value=2.2e-10 Score=129.55 Aligned_cols=155 Identities=17% Similarity=0.162 Sum_probs=104.2
Q ss_pred CeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCC-----CCCCCCceEEEEccccchhhhcCceEEEcCCC-CCC
Q 001709 711 FTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQG-----KLVRTINSGNLDAEADDQEGIAGGLCYCDSAG-VNL 781 (1022)
Q Consensus 711 ~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~-----~~~~PtsG~I~idg~~~~~~lr~~IGyV~Q~~-~~~ 781 (1022)
..++|+||||+|+ +++|+|+|||||||||++|+|.. +-|+|++|.|.+--..+ -+++|-.. +.|
T Consensus 395 eryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~-------~a~iPge~Ep~f 467 (593)
T COG2401 395 ERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTV-------SALIPGEYEPEF 467 (593)
T ss_pred eeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccch-------hhccCccccccc
Confidence 4579999999999 99999999999999999999942 22379999887642111 13344421 114
Q ss_pred ccccccccchHHHHhccccchHHHHHHHH-HhcCCcc--ccCCCcCCch-HHHHHHHHH---------hhhccccCCChh
Q 001709 782 QELTMEAARFKDEMWMGIRDLSRKTDLIV-LVHNLSH--KIPRYNYSSA-SGQQQPALS---------LLLNEAKSLGIP 848 (1022)
Q Consensus 782 ~~lTV~~~~~~ENI~~g~~~~~~~v~~~L-~v~gL~~--~~~r~~~~LS-GqrQRvaIA---------LLLDEPTSad~~ 848 (1022)
..-|+ .|.+.--. .+-..+.++| .. ||.+ +..+.+.+|| |||.|+.|| ++.||--|.
T Consensus 468 ~~~ti-----lehl~s~t-GD~~~AveILnra-GlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~Ah--- 537 (593)
T COG2401 468 GEVTI-----LEHLRSKT-GDLNAAVEILNRA-GLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAH--- 537 (593)
T ss_pred CchhH-----HHHHhhcc-CchhHHHHHHHhh-ccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhh---
Confidence 44456 66664221 2345567788 77 8865 4577889999 999999999 778887774
Q ss_pred HHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCCccc
Q 001709 849 WVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCPYVM 892 (1022)
Q Consensus 849 ~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~~V~ 892 (1022)
||..+-..+...+.+...+-.-|.+++++-+.+.
T Consensus 538 ----------LD~~TA~rVArkiselaRe~giTlivvThrpEv~ 571 (593)
T COG2401 538 ----------LDELTAVRVARKISELAREAGITLIVVTHRPEVG 571 (593)
T ss_pred ----------cCHHHHHHHHHHHHHHHHHhCCeEEEEecCHHHH
Confidence 4444444444444444455556777776544443
No 421
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.07 E-value=2.3e-10 Score=129.81 Aligned_cols=162 Identities=15% Similarity=0.198 Sum_probs=107.5
Q ss_pred cCCCeeEEEeeeEEEe--------EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccchhhhcCceEEEcCCCC
Q 001709 708 TSDFTTVFKEVHFRTR--------RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADDQEGIAGGLCYCDSAGV 779 (1022)
Q Consensus 708 ~~~~~~aLkdVSL~V~--------iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~~~~lr~~IGyV~Q~~~ 779 (1022)
+.+-+.-+.+..|.|. ++..+|.||-|||||+++++|.+ +|+.|.=. ..-.++|-+| ..
T Consensus 345 Yp~m~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~---~pd~~~e~---------p~lnVSykpq-ki 411 (592)
T KOG0063|consen 345 YPKMKKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRL---KPDEGGEI---------PVLNVSYKPQ-KI 411 (592)
T ss_pred cCcceeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCC---CCCccCcc---------cccceecccc-cc
Confidence 3444566778888886 88999999999999999999999 89876211 1234688888 33
Q ss_pred C-CccccccccchHHHHhccccc---hHHHHHHHH-HhcCCccccCCCcCCch-HHHHHHHHH---------hhhccccC
Q 001709 780 N-LQELTMEAARFKDEMWMGIRD---LSRKTDLIV-LVHNLSHKIPRYNYSSA-SGQQQPALS---------LLLNEAKS 844 (1022)
Q Consensus 780 ~-~~~lTV~~~~~~ENI~~g~~~---~~~~v~~~L-~v~gL~~~~~r~~~~LS-GqrQRvaIA---------LLLDEPTS 844 (1022)
. =...|| ++-+.--.++ .-.-+..++ -+ .+++..|+.+..|| |++||+||| +|.|||.+
T Consensus 412 spK~~~tv-----R~ll~~kIr~ay~~pqF~~dvmkpL-~ie~i~dqevq~lSggelQRval~KOGGKpAdvYliDEpsA 485 (592)
T KOG0063|consen 412 SPKREGTV-----RQLLHTKIRDAYMHPQFVNDVMKPL-QIENIIDQEVQGLSGGELQRVALALCLGKPADVYLIDEPSA 485 (592)
T ss_pred CccccchH-----HHHHHHHhHhhhcCHHHHHhhhhhh-hHHHHHhHHhhcCCchhhHHHHHHHhcCCCCceEEecCchh
Confidence 3 223566 4443221111 223344555 33 56788999999999 999999999 89999999
Q ss_pred CChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCCcccccCcccccccCCCCC
Q 001709 845 LGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCPYVMPGAVSASLSWGASGG 907 (1022)
Q Consensus 845 ad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~~V~~~~~~a~~l~~~~~~ 907 (1022)
. +|..+|..+...+.+-.-....+..+|. |++--+-|++||+.+
T Consensus 486 y-------------lDSeQRi~AskvikRfilhakktafvVE------hdfImaTYladrviv 529 (592)
T KOG0063|consen 486 Y-------------LDSEQRIIASKVIKRFILHAKKTAFVVE------HDFIMATYLADRVIV 529 (592)
T ss_pred h-------------cChHHHHHHHHHHHHHHHhccchhhhhh------hHHHHHHhhcceeEE
Confidence 6 3434444444444333333344555554 666667788888765
No 422
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=99.02 E-value=4.7e-10 Score=107.43 Aligned_cols=70 Identities=17% Similarity=0.146 Sum_probs=57.4
Q ss_pred eeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc----hhhhcCceEEEcCCCCCCccc
Q 001709 712 TTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD----QEGIAGGLCYCDSAGVNLQEL 784 (1022)
Q Consensus 712 ~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~----~~~lr~~IGyV~Q~~~~~~~l 784 (1022)
..+|++++|+++ +++|+||||||||||+++|+ +|++.+++.++ ....++.++|++| + ++..
T Consensus 2 ~~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~---------~G~i~~~g~di~~~~~~~~~~~~~~~~q-~--lf~~ 69 (107)
T cd00820 2 TTSLHGVLVDVYGKVGVLITGDSGIGKTELALELI---------KRKHRLVGDDNVEIREDSKDELIGRNPE-L--GLEI 69 (107)
T ss_pred ceEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh---------CCeEEEeeEeHHHhhhhhcCCEEEEech-h--cchh
Confidence 578999999998 99999999999999999975 58899998765 3345566788888 4 4447
Q ss_pred cccccchHHHHhcc
Q 001709 785 TMEAARFKDEMWMG 798 (1022)
Q Consensus 785 TV~~~~~~ENI~~g 798 (1022)
|+ +|||.+.
T Consensus 70 ti-----~~Ni~~~ 78 (107)
T cd00820 70 RL-----RLNIFLI 78 (107)
T ss_pred hH-----Hhhceee
Confidence 99 9999874
No 423
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.00 E-value=3.8e-10 Score=117.10 Aligned_cols=129 Identities=12% Similarity=0.033 Sum_probs=76.9
Q ss_pred eeEEEeeeEEEe-EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccchhhhcCceEEEcCCCCCCccccccccc
Q 001709 712 TTVFKEVHFRTR-RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADDQEGIAGGLCYCDSAGVNLQELTMEAAR 790 (1022)
Q Consensus 712 ~~aLkdVSL~V~-iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~~~~lr~~IGyV~Q~~~~~~~lTV~~~~ 790 (1022)
..+..|++++=. +++|+||||||||||||+|++.. +.+..|... ...+..++|.+| .+..++.
T Consensus 18 ~~~~~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~--~~~~~g~~~-------~~~~~~i~~~dq---i~~~~~~---- 81 (202)
T cd03243 18 TFVPNDINLGSGRLLLITGPNMGGKSTYLRSIGLAV--LLAQIGCFV-------PAESASIPLVDR---IFTRIGA---- 81 (202)
T ss_pred ceEeeeEEEcCCeEEEEECCCCCccHHHHHHHHHHH--HHHHcCCCc-------cccccccCCcCE---EEEEecC----
Confidence 456677777755 99999999999999999999643 023333211 111234455443 1221222
Q ss_pred hHHHHhccccchHHHHHHHHHhcCCccccCCCcCCch-HHHHHHHHH--------hhhccccCCChhHHHHHhhhhcccH
Q 001709 791 FKDEMWMGIRDLSRKTDLIVLVHNLSHKIPRYNYSSA-SGQQQPALS--------LLLNEAKSLGIPWVLAITNKFSVSA 861 (1022)
Q Consensus 791 ~~ENI~~g~~~~~~~v~~~L~v~gL~~~~~r~~~~LS-GqrQRvaIA--------LLLDEPTSad~~~v~~I~~~~~ld~ 861 (1022)
.+........++ +++|...|+ +||||||++ +|.
T Consensus 82 -------------------------~d~i~~~~s~~~~e~~~l~~i~~~~~~~~llllDEp~~g-------------ld~ 123 (202)
T cd03243 82 -------------------------EDSISDGRSTFMAELLELKEILSLATPRSLVLIDELGRG-------------TST 123 (202)
T ss_pred -------------------------cccccCCceeHHHHHHHHHHHHHhccCCeEEEEecCCCC-------------CCH
Confidence 112234445667 777766555 999999996 566
Q ss_pred HHHHHHHHHHHHHHHhCCCeEEEEecCCccccc
Q 001709 862 HQQRAAIDAVMQAYQASPSTTEVINSCPYVMPG 894 (1022)
Q Consensus 862 ~~~~~~i~~ll~~~~~t~~~~vVv~~~~~V~~~ 894 (1022)
..+..+...+++.+.....++++++|...+...
T Consensus 124 ~~~~~l~~~ll~~l~~~~~~vi~~tH~~~~~~~ 156 (202)
T cd03243 124 AEGLAIAYAVLEHLLEKGCRTLFATHFHELADL 156 (202)
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEECChHHHHHH
Confidence 666665555555555544566666655555443
No 424
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.95 E-value=2.3e-09 Score=112.74 Aligned_cols=127 Identities=12% Similarity=0.072 Sum_probs=86.0
Q ss_pred CeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccchhhhcCceE-EEcCCCCCCccccc
Q 001709 711 FTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADDQEGIAGGLC-YCDSAGVNLQELTM 786 (1022)
Q Consensus 711 ~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~~~~lr~~IG-yV~Q~~~~~~~lTV 786 (1022)
...+.+|++|+++ +++|.||||+|||||+|+|+++. + ..++| |||- .+..+++
T Consensus 15 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~---------~-----------la~~G~~vpa---~~~~l~~ 71 (204)
T cd03282 15 KNFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLA---------I-----------MAQIGCFVPA---EYATLPI 71 (204)
T ss_pred CcEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHH---------H-----------HHHcCCCcch---hhcCccC
Confidence 4578999999997 89999999999999999998875 0 11122 3322 2444566
Q ss_pred cccchHHHHhccccchHHHHHHHHHhcCCccccCCCcCCch-HHHHHHHHH--------hhhccccCCChhHHHHHhhhh
Q 001709 787 EAARFKDEMWMGIRDLSRKTDLIVLVHNLSHKIPRYNYSSA-SGQQQPALS--------LLLNEAKSLGIPWVLAITNKF 857 (1022)
Q Consensus 787 ~~~~~~ENI~~g~~~~~~~v~~~L~v~gL~~~~~r~~~~LS-GqrQRvaIA--------LLLDEPTSad~~~v~~I~~~~ 857 (1022)
.|+|.. .+ +..+...+..+++| |++|+..|. +|||||+++
T Consensus 72 -----~d~I~~-------------~~-~~~d~~~~~~S~fs~e~~~~~~il~~~~~~~lvllDE~~~g------------ 120 (204)
T cd03282 72 -----FNRLLS-------------RL-SNDDSMERNLSTFASEMSETAYILDYADGDSLVLIDELGRG------------ 120 (204)
T ss_pred -----hhheeE-------------ec-CCccccchhhhHHHHHHHHHHHHHHhcCCCcEEEeccccCC------------
Confidence 666632 22 55555677788999 998876555 999999986
Q ss_pred cccHHHHHHHHHHHHHHHHhCCCeEEEEecCCccc
Q 001709 858 SVSAHQQRAAIDAVMQAYQASPSTTEVINSCPYVM 892 (1022)
Q Consensus 858 ~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~~V~ 892 (1022)
.++.++..+...+++.+.....++++.+|...+.
T Consensus 121 -t~~~~~~~l~~~il~~l~~~~~~~i~~TH~~~l~ 154 (204)
T cd03282 121 -TSSADGFAISLAILECLIKKESTVFFATHFRDIA 154 (204)
T ss_pred -CCHHHHHHHHHHHHHHHHhcCCEEEEECChHHHH
Confidence 4555555555556666666555666666444433
No 425
>PF11187 DUF2974: Protein of unknown function (DUF2974); InterPro: IPR024499 This family of proteins has no known function.
Probab=98.92 E-value=2.7e-09 Score=114.01 Aligned_cols=77 Identities=19% Similarity=0.254 Sum_probs=51.1
Q ss_pred HHhcCCCeEEEeccChhHHHHHHHHHHHHHHHhhhcccccCCCcce-EEEEeCCCccccHHHHHHHHhcCCCceeEEEee
Q 001709 226 LAQKKKRKLVLCGHSLGGAVAALATLAILRVVAASSSLKENDKVQV-KCITFSQPPVGNAALRDYVNRKGWQHYFKSYCI 304 (1022)
Q Consensus 226 l~~~p~ykLVvTGHSLGGALAtLAAl~LLr~~~~~~~~~~~~~~~V-~vyTFGqPRVGN~aFA~~v~~~~~~~~f~RVVh 304 (1022)
.+.+++ +|++|||||||.+|..|++.+-..+ ..+| .||||=.|-..+.-+..---+.... .+++|+.
T Consensus 79 ~~~~~~-~i~v~GHSkGGnLA~yaa~~~~~~~----------~~rI~~vy~fDgPGf~~~~~~~~~~~~~~~-kI~~~vp 146 (224)
T PF11187_consen 79 AKKYPG-KIYVTGHSKGGNLAQYAAANCDDEI----------QDRISKVYSFDGPGFSEEFLESPGYQRIKD-KIHNYVP 146 (224)
T ss_pred HHhCCC-CEEEEEechhhHHHHHHHHHccHHH----------hhheeEEEEeeCCCCChhhcccHhHHHHhh-hhEEEcC
Confidence 445666 4999999999999999996642111 1233 8999999977764444211111112 2447899
Q ss_pred CCCcccccCC
Q 001709 305 PEDLVPRILS 314 (1022)
Q Consensus 305 ~~DiVPrLP~ 314 (1022)
..|+|..|..
T Consensus 147 ~~siVg~ll~ 156 (224)
T PF11187_consen 147 QSSIVGMLLE 156 (224)
T ss_pred Ccceeccccc
Confidence 9999998763
No 426
>COG3675 Predicted lipase [Lipid metabolism]
Probab=98.86 E-value=5.5e-10 Score=121.50 Aligned_cols=163 Identities=18% Similarity=0.185 Sum_probs=100.3
Q ss_pred CCeEEEEEcCCCCchhhhhhccccccccccccchhhhhhhccccchhhhhccCCCCCCCCCCCCCcccCCCCCCcccHhH
Q 001709 132 GDTLFASFIGTKQYKDVMTDANILQGAIFHEDAIEDMEGIELGESKQAKEQKGNGENRWNPLEKPRQLKDKPKPAAHRGF 211 (1022)
Q Consensus 132 ~~~IVVAFRGT~s~~DwitDl~~~q~~~f~~~~l~~~~~~~a~~~~~~~~q~g~~~~~g~~~~~~k~~~~~~~~~VH~GF 211 (1022)
.+..+++|+|+.+-+||..|+++....+-+ +|-+.+.-.+ ..+ ....|.+|..|++|
T Consensus 92 s~~vi~vf~gs~~Rqdw~~~fd~de~n~~~---l~~g~lay~i-------e~g-------------~~~~ldn~gm~~~~ 148 (332)
T COG3675 92 SDEVIVVFKGSHSRQDWLLNFDVDERNCRH---LCVGELAYRI-------EAG-------------FYHLLDNEGMHRQP 148 (332)
T ss_pred CCcEEEEEeccccccccchhcccchhhhhH---HHHHHHHHHh-------hcc-------------ceeeccccccccch
Confidence 468999999999999999999876433211 1111000000 001 01136677799999
Q ss_pred HHHHhcChh-----HHHHHHHhcCC-CeEEEeccChhHHHHHHHHHHHHHHHhhhcccccCCCcceEEEEeCCCccccHH
Q 001709 212 LARAKGIPA-----LELYRLAQKKK-RKLVLCGHSLGGAVAALATLAILRVVAASSSLKENDKVQVKCITFSQPPVGNAA 285 (1022)
Q Consensus 212 l~a~~~I~~-----~~l~~l~~~p~-ykLVvTGHSLGGALAtLAAl~LLr~~~~~~~~~~~~~~~V~vyTFGqPRVGN~a 285 (1022)
...=..... +....+..-|- |++.+||||+|||++.+++..+-+ +.++.+-.++|||+|.++|-.
T Consensus 149 sr~~dtlgmtv~~~q~~~lleeiP~~Yrig~tghS~g~aii~vrGtyfe~---------k~p~vdnlv~tf~~P~itd~r 219 (332)
T COG3675 149 SRNQDTLGMTVIEKQEQTLLEEIPQGYRIGITGHSSGGAIICVRGTYFER---------KYPRVDNLVVTFGQPAITDWR 219 (332)
T ss_pred hhhhhhcCchHHHHHHHHHHHhcccceEEEEEeecCCccEEEEeccchhc---------ccCCcccceeeccCCccccch
Confidence 876554322 23334667786 999999999999999999964422 123444567799999999999
Q ss_pred HHHHHHhcCCCceeEEEeeCCCcccccCC-CCccccCCCceee
Q 001709 286 LRDYVNRKGWQHYFKSYCIPEDLVPRILS-PAYFHHYNNVQPL 327 (1022)
Q Consensus 286 FA~~v~~~~~~~~f~RVVh~~DiVPrLP~-~~~f~H~~~Evw~ 327 (1022)
|++||++-.. ++..|++..-|.+-.+|. ++.|.|.+.-.|.
T Consensus 220 ~~QyVh~gF~-~~t~ri~S~l~~ei~~~k~pf~ycHsgg~~~a 261 (332)
T COG3675 220 FPQYVHEGFA-HKTYRICSDLDIEIFMPKVPFLYCHSGGLLWA 261 (332)
T ss_pred hHHHHHhHHH-HHHHHHhccchHhhcCcCCceEEEecCCcccc
Confidence 9999885322 222244443333333332 3344455444443
No 427
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=98.82 E-value=1.3e-08 Score=104.82 Aligned_cols=54 Identities=17% Similarity=0.190 Sum_probs=37.0
Q ss_pred ch-HHHHHHHHH-------------hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCCcc
Q 001709 826 SA-SGQQQPALS-------------LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCPYV 891 (1022)
Q Consensus 826 LS-GqrQRvaIA-------------LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~~V 891 (1022)
|| |||||++|| +|||||+++ +|...+..+...+.+. .....+++++.|....
T Consensus 95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~-------------LD~~~~~~i~~~L~~~-~~~g~tiIiiSH~~~~ 160 (178)
T cd03239 95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAA-------------LDPTNRRRVSDMIKEM-AKHTSQFIVITLKKEM 160 (178)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCC-------------CCHHHHHHHHHHHHHH-HhCCCEEEEEECCHHH
Confidence 99 999999998 678999996 6666666666555443 3333466666655444
Q ss_pred cc
Q 001709 892 MP 893 (1022)
Q Consensus 892 ~~ 893 (1022)
+.
T Consensus 161 ~~ 162 (178)
T cd03239 161 FE 162 (178)
T ss_pred Hh
Confidence 43
No 428
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.80 E-value=3.1e-08 Score=107.99 Aligned_cols=31 Identities=29% Similarity=0.348 Sum_probs=25.7
Q ss_pred EEeeeEEEe--EEEEEcCCCCcHHHHHHHHHcC
Q 001709 715 FKEVHFRTR--RVRLLGLEGAGKTSLFKAILGQ 745 (1022)
Q Consensus 715 LkdVSL~V~--iVaLlGpNGAGKSTLLklL~GL 745 (1022)
++++.+++. +.+|+|||||||||+|.+|.=+
T Consensus 12 ~~~~~i~~~~~~~~i~G~nGsGKS~il~ai~~~ 44 (276)
T cd03241 12 IEELELDFEEGLTVLTGETGAGKSILLDALSLL 44 (276)
T ss_pred eeeeEEEeCCCeEEEEcCCCCCHHHHHHHHHHH
Confidence 466666666 9999999999999999998643
No 429
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.73 E-value=1.7e-08 Score=107.34 Aligned_cols=33 Identities=15% Similarity=0.212 Sum_probs=30.1
Q ss_pred CeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHH
Q 001709 711 FTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAIL 743 (1022)
Q Consensus 711 ~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~ 743 (1022)
...+.+|++|+.+ ++.|.||||+|||||+|+|+
T Consensus 16 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~ 51 (222)
T cd03285 16 VAFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIG 51 (222)
T ss_pred CCeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHH
Confidence 4568999999995 89999999999999999988
No 430
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=98.72 E-value=3.3e-08 Score=108.46 Aligned_cols=59 Identities=15% Similarity=-0.036 Sum_probs=48.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc-----hhhhcCceEEEcCCCCCCccccc
Q 001709 724 RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD-----QEGIAGGLCYCDSAGVNLQELTM 786 (1022)
Q Consensus 724 iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~-----~~~lr~~IGyV~Q~~~~~~~lTV 786 (1022)
-++|+||||||||||+++|+|++ .|++|+|.++|.++ ..+++..+++++| ......++|
T Consensus 113 ~~~i~g~~g~GKttl~~~l~~~~---~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q-~~~~~r~~v 176 (270)
T TIGR02858 113 NTLIISPPQCGKTTLLRDLARIL---STGISQLGLRGKKVGIVDERSEIAGCVNGVPQ-HDVGIRTDV 176 (270)
T ss_pred EEEEEcCCCCCHHHHHHHHhCcc---CCCCceEEECCEEeecchhHHHHHHHhccccc-ccccccccc
Confidence 67999999999999999999999 99999999998765 2355667889999 344555677
No 431
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=98.70 E-value=4.5e-08 Score=103.63 Aligned_cols=72 Identities=11% Similarity=0.073 Sum_probs=52.6
Q ss_pred eeEEEeeeEEEe--EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccchhhhcCceEEEcCCCCCCcccccccc
Q 001709 712 TTVFKEVHFRTR--RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADDQEGIAGGLCYCDSAGVNLQELTMEAA 789 (1022)
Q Consensus 712 ~~aLkdVSL~V~--iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~~~~lr~~IGyV~Q~~~~~~~lTV~~~ 789 (1022)
..+.+|++|+++ +++|+||||||||||||+|+++.. -...| ..++ ..+..++|++| .|+.+++
T Consensus 18 ~~v~n~~~l~~~~~~~~l~Gpn~sGKstllr~i~~~~~--l~~~g------~~vp-~~~~~i~~~~~---i~~~~~~--- 82 (216)
T cd03284 18 PFVPNDTELDPERQILLITGPNMAGKSTYLRQVALIAL--LAQIG------SFVP-ASKAEIGVVDR---IFTRIGA--- 82 (216)
T ss_pred ceEeeeEEecCCceEEEEECCCCCChHHHHHHHHHHHH--HhccC------Ceec-cccceecceee---EeccCCc---
Confidence 458999999998 999999999999999999998651 12222 1121 12356888876 4677889
Q ss_pred chHHHHhcccc
Q 001709 790 RFKDEMWMGIR 800 (1022)
Q Consensus 790 ~~~ENI~~g~~ 800 (1022)
.||+..+..
T Consensus 83 --~~~ls~g~s 91 (216)
T cd03284 83 --SDDLAGGRS 91 (216)
T ss_pred --hhhhccCcc
Confidence 999987753
No 432
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=98.67 E-value=8.7e-08 Score=125.40 Aligned_cols=81 Identities=14% Similarity=0.043 Sum_probs=62.2
Q ss_pred HHH-HhcCCcc-ccCCCcCCch-HHHHHHHHH------------hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHH
Q 001709 808 LIV-LVHNLSH-KIPRYNYSSA-SGQQQPALS------------LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVM 872 (1022)
Q Consensus 808 ~~L-~v~gL~~-~~~r~~~~LS-GqrQRvaIA------------LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll 872 (1022)
+.| .+ ||.. .+++...+|| |+.||+-|| +||||||.+ |..++-..++..+
T Consensus 1681 ~~L~~v-GLgYl~LGq~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~G-------------Lh~~d~~~Ll~~l- 1745 (1809)
T PRK00635 1681 QALIDN-GLGYLPLGQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATS-------------LDNQQKSALLVQL- 1745 (1809)
T ss_pred HHHHHc-CCCeeeCCCcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCC-------------CCHHHHHHHHHHH-
Confidence 344 67 8875 4789999999 999999999 899999996 5555656655544
Q ss_pred HHHHhCCCeEEEEecCCcccccCcccccccC
Q 001709 873 QAYQASPSTTEVINSCPYVMPGAVSASLSWG 903 (1022)
Q Consensus 873 ~~~~~t~~~~vVv~~~~~V~~~~~~a~~l~~ 903 (1022)
+.+....++++||.|-..++..+|-.+-+.-
T Consensus 1746 ~~L~~~g~tvivieH~~~~i~~aD~iidlgp 1776 (1809)
T PRK00635 1746 RTLVSLGHSVIYIDHDPALLKQADYLIEMGP 1776 (1809)
T ss_pred HHHHhcCCeEEEEeCCHHHHHhCCEEEEcCC
Confidence 5566778899999888888877776665544
No 433
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=98.66 E-value=5.2e-08 Score=120.18 Aligned_cols=119 Identities=9% Similarity=0.069 Sum_probs=73.7
Q ss_pred eeEEEe----EEEEEcCCCCcHHHHHHHHHcC-CCCCCCCceEEEEccccchhhhcCceEEEcCCCCCCccccccccchH
Q 001709 718 VHFRTR----RVRLLGLEGAGKTSLFKAILGQ-GKLVRTINSGNLDAEADDQEGIAGGLCYCDSAGVNLQELTMEAARFK 792 (1022)
Q Consensus 718 VSL~V~----iVaLlGpNGAGKSTLLklL~GL-~~~~~PtsG~I~idg~~~~~~lr~~IGyV~Q~~~~~~~lTV~~~~~~ 792 (1022)
+|+++. +++|.||||+|||||||+|+|+ + .+..|-.. +......++|..|
T Consensus 314 ~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l---~aq~G~~V------pa~~~~~~~~~d~---------------- 368 (771)
T TIGR01069 314 FTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLAL---MFQSGIPI------PANEHSEIPYFEE---------------- 368 (771)
T ss_pred ceeEeCCCceEEEEECCCCCCchHHHHHHHHHHH---HHHhCCCc------cCCccccccchhh----------------
Confidence 455554 8999999999999999999998 3 34444110 0100112333333
Q ss_pred HHHhccccchHHHHHHHHHhcCCccccCCCcCCch-HHHHHHHHH--------hhhccccCCChhHHHHHhhhhcccHHH
Q 001709 793 DEMWMGIRDLSRKTDLIVLVHNLSHKIPRYNYSSA-SGQQQPALS--------LLLNEAKSLGIPWVLAITNKFSVSAHQ 863 (1022)
Q Consensus 793 ENI~~g~~~~~~~v~~~L~v~gL~~~~~r~~~~LS-GqrQRvaIA--------LLLDEPTSad~~~v~~I~~~~~ld~~~ 863 (1022)
+... + +....+....+++| ||+|++.|+ +|||||+++ .|+.+
T Consensus 369 --i~~~-------------i-~~~~si~~~LStfS~~m~~~~~il~~~~~~sLvLlDE~g~G-------------tD~~e 419 (771)
T TIGR01069 369 --IFAD-------------I-GDEQSIEQNLSTFSGHMKNISAILSKTTENSLVLFDELGAG-------------TDPDE 419 (771)
T ss_pred --eeee-------------c-ChHhHHhhhhhHHHHHHHHHHHHHHhcCCCcEEEecCCCCC-------------CCHHH
Confidence 1100 0 11122335567789 999999987 999999997 66667
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEecCCc
Q 001709 864 QRAAIDAVMQAYQASPSTTEVINSCPY 890 (1022)
Q Consensus 864 ~~~~i~~ll~~~~~t~~~~vVv~~~~~ 890 (1022)
...+...+++.+.....++++.+|...
T Consensus 420 g~ala~aiLe~l~~~g~~viitTH~~e 446 (771)
T TIGR01069 420 GSALAISILEYLLKQNAQVLITTHYKE 446 (771)
T ss_pred HHHHHHHHHHHHHhcCCEEEEECChHH
Confidence 766655666666555445565554433
No 434
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=98.66 E-value=3.1e-08 Score=99.76 Aligned_cols=112 Identities=19% Similarity=0.216 Sum_probs=68.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccchhhhcCceEEEcCCCCCCccccccccchHHHHhccccchH
Q 001709 724 RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADDQEGIAGGLCYCDSAGVNLQELTMEAARFKDEMWMGIRDLS 803 (1022)
Q Consensus 724 iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~~~~lr~~IGyV~Q~~~~~~~lTV~~~~~~ENI~~g~~~~~ 803 (1022)
++.|+|||||||||+++.|.... -...|.+... ..+ |.....+..++ .+
T Consensus 23 ~~~i~G~NgsGKS~~l~~i~~~~---~~~~~~~~~~---------~~~----~~g~~~~~~~~---------~~------ 71 (162)
T cd03227 23 LTIITGPNGSGKSTILDAIGLAL---GGAQSATRRR---------SGV----KAGCIVAAVSA---------EL------ 71 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH---Hhcchhhhcc---------Ccc----cCCCcceeeEE---------EE------
Confidence 88999999999999999987765 3444433220 000 10111111111 11
Q ss_pred HHHHHHHHhcCCccccCCCcCCch-HHHHHHHHH-------------hhhccccCCChhHHHHHhhhhcccHHHHHHHHH
Q 001709 804 RKTDLIVLVHNLSHKIPRYNYSSA-SGQQQPALS-------------LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAID 869 (1022)
Q Consensus 804 ~~v~~~L~v~gL~~~~~r~~~~LS-GqrQRvaIA-------------LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~ 869 (1022)
+... .+|| ||+||++|| +|||||+++ +|..++..+..
T Consensus 72 -----i~~~-----------~~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~g-------------ld~~~~~~l~~ 122 (162)
T cd03227 72 -----IFTR-----------LQLSGGEKELSALALILALASLKPRPLYILDEIDRG-------------LDPRDGQALAE 122 (162)
T ss_pred -----ehhe-----------eeccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCC-------------CCHHHHHHHHH
Confidence 1111 1299 999999998 789999996 77777777777
Q ss_pred HHHHHHHhCCCeEEEEecCCcccccCc
Q 001709 870 AVMQAYQASPSTTEVINSCPYVMPGAV 896 (1022)
Q Consensus 870 ~ll~~~~~t~~~~vVv~~~~~V~~~~~ 896 (1022)
.+.+.... ..++++++|...+...++
T Consensus 123 ~l~~~~~~-~~~vii~TH~~~~~~~~d 148 (162)
T cd03227 123 AILEHLVK-GAQVIVITHLPELAELAD 148 (162)
T ss_pred HHHHHHhc-CCEEEEEcCCHHHHHhhh
Confidence 66655444 446666665555554433
No 435
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=98.66 E-value=6.2e-08 Score=117.17 Aligned_cols=82 Identities=16% Similarity=0.077 Sum_probs=59.7
Q ss_pred HHHHHHhcCCcc-ccCCCcCCch-HHHHHHHHH------------hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHH
Q 001709 806 TDLIVLVHNLSH-KIPRYNYSSA-SGQQQPALS------------LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAV 871 (1022)
Q Consensus 806 v~~~L~v~gL~~-~~~r~~~~LS-GqrQRvaIA------------LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~l 871 (1022)
++.+..| ||.- .+++...+|| |+-|||-|| +||||||.+ |-.++-+.++..+
T Consensus 803 LqtL~dV-GLgYi~LGQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTG-------------LH~~Di~kLl~VL 868 (935)
T COG0178 803 LQTLVDV-GLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTG-------------LHFDDIKKLLEVL 868 (935)
T ss_pred HHHHHHc-CcceEecCCccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCC-------------CCHHHHHHHHHHH
Confidence 3333377 7763 5789999999 999999999 999999996 3344445555444
Q ss_pred HHHHHhCCCeEEEEecCCcccccCccccccc
Q 001709 872 MQAYQASPSTTEVINSCPYVMPGAVSASLSW 902 (1022)
Q Consensus 872 l~~~~~t~~~~vVv~~~~~V~~~~~~a~~l~ 902 (1022)
+.+....++++||.|--.|+..+|-.+-+.
T Consensus 869 -~rLvd~GnTViVIEHNLdVIk~AD~IIDLG 898 (935)
T COG0178 869 -HRLVDKGNTVIVIEHNLDVIKTADWIIDLG 898 (935)
T ss_pred -HHHHhCCCEEEEEecccceEeecCEEEEcC
Confidence 444566889999987777777777666554
No 436
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=98.61 E-value=2e-08 Score=103.34 Aligned_cols=112 Identities=14% Similarity=0.042 Sum_probs=68.6
Q ss_pred EEEEEcCCCCcHHHHHHHHH-cCCCCCCCCceEEEEccccchhhhcCceEEEcCCCCCCccccccccchHHHHhccccch
Q 001709 724 RVRLLGLEGAGKTSLFKAIL-GQGKLVRTINSGNLDAEADDQEGIAGGLCYCDSAGVNLQELTMEAARFKDEMWMGIRDL 802 (1022)
Q Consensus 724 iVaLlGpNGAGKSTLLklL~-GL~~~~~PtsG~I~idg~~~~~~lr~~IGyV~Q~~~~~~~lTV~~~~~~ENI~~g~~~~ 802 (1022)
++.|.||||+|||||||.|+ ..+ ....|.... . -.-.++++.+
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~~~~---la~~G~~v~------a-~~~~~~~~d~-------------------------- 44 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGLIVI---MAQIGSFVP------A-ESAELPVFDR-------------------------- 44 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHH---HHHhCCCee------e-hheEecccce--------------------------
Confidence 36799999999999999998 333 233332111 0 0122233222
Q ss_pred HHHHHHHH-HhcCCccccCCCcCCch-HHHHHHHHH--------hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHH
Q 001709 803 SRKTDLIV-LVHNLSHKIPRYNYSSA-SGQQQPALS--------LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVM 872 (1022)
Q Consensus 803 ~~~v~~~L-~v~gL~~~~~r~~~~LS-GqrQRvaIA--------LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll 872 (1022)
++ .+ ++.+..++..+++| |++|...+. +|||||+++ +|..++..+...++
T Consensus 45 ------il~~~-~~~d~~~~~~s~fs~~~~~l~~~l~~~~~~~llllDEp~~g-------------~d~~~~~~~~~~~l 104 (185)
T smart00534 45 ------IFTRI-GASDSLAQGLSTFMVEMKETANILKNATENSLVLLDELGRG-------------TSTYDGVAIAAAVL 104 (185)
T ss_pred ------EEEEe-CCCCchhccccHHHHHHHHHHHHHHhCCCCeEEEEecCCCC-------------CCHHHHHHHHHHHH
Confidence 11 12 55566677888999 888766666 999999996 66666666655555
Q ss_pred HHHHhC-CCeEEEEecCCcc
Q 001709 873 QAYQAS-PSTTEVINSCPYV 891 (1022)
Q Consensus 873 ~~~~~t-~~~~vVv~~~~~V 891 (1022)
+.+... ..++++.+|...+
T Consensus 105 ~~l~~~~~~~iii~TH~~~l 124 (185)
T smart00534 105 EYLLEKIGALTLFATHYHEL 124 (185)
T ss_pred HHHHhcCCCeEEEEecHHHH
Confidence 555543 4455555644433
No 437
>COG3675 Predicted lipase [Lipid metabolism]
Probab=98.60 E-value=2.5e-08 Score=108.89 Aligned_cols=137 Identities=20% Similarity=0.195 Sum_probs=97.4
Q ss_pred ccCCeEEEEEcCC--CCchhhhhhccccccccccccchhhhhhhccccchhhhhccCCCCCCCCCCCCCcccCCCCCCcc
Q 001709 130 EAGDTLFASFIGT--KQYKDVMTDANILQGAIFHEDAIEDMEGIELGESKQAKEQKGNGENRWNPLEKPRQLKDKPKPAA 207 (1022)
Q Consensus 130 e~~~~IVVAFRGT--~s~~DwitDl~~~q~~~f~~~~l~~~~~~~a~~~~~~~~q~g~~~~~g~~~~~~k~~~~~~~~~V 207 (1022)
.+...-+++|||| ++..-|..++.+.+..+ .+.++ ...-.|
T Consensus 182 hS~g~aii~vrGtyfe~k~p~vdnlv~tf~~P----~itd~---------------------------------r~~QyV 224 (332)
T COG3675 182 HSSGGAIICVRGTYFERKYPRVDNLVVTFGQP----AITDW---------------------------------RFPQYV 224 (332)
T ss_pred ecCCccEEEEeccchhcccCCcccceeeccCC----ccccc---------------------------------hhHHHH
Confidence 4556678899999 77788888776532211 11110 001138
Q ss_pred cHhHHHHHhcChhHHHHHHHhcCCCeEEEeccChhHHHHHHHHHHHHHHHhhhcccccCCCcceEEEEeCCCccccHHHH
Q 001709 208 HRGFLARAKGIPALELYRLAQKKKRKLVLCGHSLGGAVAALATLAILRVVAASSSLKENDKVQVKCITFSQPPVGNAALR 287 (1022)
Q Consensus 208 H~GFl~a~~~I~~~~l~~l~~~p~ykLVvTGHSLGGALAtLAAl~LLr~~~~~~~~~~~~~~~V~vyTFGqPRVGN~aFA 287 (1022)
|+||...+..+-...-..+...+.+.+++ ||+|++.|.++ +.+ .+-+..+.+|++ ||||...||
T Consensus 225 h~gF~~~t~ri~S~l~~ei~~~k~pf~yc--Hsgg~~~avl~-----~~y-------hn~p~~lrLy~y--prVGl~~fa 288 (332)
T COG3675 225 HEGFAHKTYRICSDLDIEIFMPKVPFLYC--HSGGLLWAVLG-----RIY-------HNTPTWLRLYRY--PRVGLIRFA 288 (332)
T ss_pred HhHHHHHHHHHhccchHhhcCcCCceEEE--ecCCccccccc-----ccc-------cCCchhheeecc--ccccccchH
Confidence 99999988876554445577888888888 99999999887 212 122345789999 999999999
Q ss_pred HHHHhcCCCceeEEEeeCCCcccccCCC--CccccCCCceee
Q 001709 288 DYVNRKGWQHYFKSYCIPEDLVPRILSP--AYFHHYNNVQPL 327 (1022)
Q Consensus 288 ~~v~~~~~~~~f~RVVh~~DiVPrLP~~--~~f~H~~~Evw~ 327 (1022)
+++.. +|++|..|.+|-+|-. ..+.|.. |.|-
T Consensus 289 e~il~-------YR~vNn~d~~p~~pt~gm~t~VHV~-e~~~ 322 (332)
T COG3675 289 EYILM-------YRYVNNKDFFPERPTEGMSTLVHVY-EHRA 322 (332)
T ss_pred HHHHH-------HhhcchhhhccccccccccceeEEE-eeee
Confidence 99443 2899999999999953 3477887 7775
No 438
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.44 E-value=7.1e-07 Score=95.40 Aligned_cols=44 Identities=14% Similarity=0.115 Sum_probs=37.9
Q ss_pred eeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHc-CCCCCCCCceEEEE
Q 001709 712 TTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILG-QGKLVRTINSGNLD 758 (1022)
Q Consensus 712 ~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~G-L~~~~~PtsG~I~i 758 (1022)
..+.+|++|.+. +++|.||||+||||+||+|++ .+ .+..|....
T Consensus 18 ~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~---la~~G~~v~ 65 (222)
T cd03287 18 SFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITI---MAQIGSFVP 65 (222)
T ss_pred CEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHH---HHhCCCEEE
Confidence 468999999997 899999999999999999999 44 678887543
No 439
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=98.39 E-value=1.5e-07 Score=97.90 Aligned_cols=23 Identities=30% Similarity=0.563 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHH-HHHHcCC
Q 001709 724 RVRLLGLEGAGKTSLF-KAILGQG 746 (1022)
Q Consensus 724 iVaLlGpNGAGKSTLL-klL~GL~ 746 (1022)
.++|+|+||||||||+ +++.|..
T Consensus 11 kv~liG~~g~GKTtLi~~~~~~~~ 34 (215)
T PTZ00132 11 KLILVGDGGVGKTTFVKRHLTGEF 34 (215)
T ss_pred eEEEECCCCCCHHHHHHHHHhCCC
Confidence 6899999999999999 6888876
No 440
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.38 E-value=1.3e-06 Score=92.56 Aligned_cols=55 Identities=13% Similarity=0.082 Sum_probs=37.1
Q ss_pred eEEEeeeEEE---eEEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccchhhhcCceEEEcC
Q 001709 713 TVFKEVHFRT---RRVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADDQEGIAGGLCYCDS 776 (1022)
Q Consensus 713 ~aLkdVSL~V---~iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~~~~lr~~IGyV~Q 776 (1022)
.+-+|+++.= ++++|.||||+|||||||.|+.... -+..|.+.... ...++|..|
T Consensus 17 ~vpnd~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~--la~~G~~v~a~-------~~~~~~~d~ 74 (213)
T cd03281 17 FVPNDTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVF--LAHIGSFVPAD-------SATIGLVDK 74 (213)
T ss_pred eEcceEEecCCCceEEEEECCCCCChHHHHHHHHHHHH--HHhCCCeeEcC-------CcEEeeeee
Confidence 4556666652 3789999999999999999984320 15566554321 234678777
No 441
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=98.34 E-value=1.3e-07 Score=110.46 Aligned_cols=47 Identities=11% Similarity=0.142 Sum_probs=42.1
Q ss_pred eeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCce-EEEEccccc
Q 001709 712 TTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINS-GNLDAEADD 763 (1022)
Q Consensus 712 ~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG-~I~idg~~~ 763 (1022)
..+|++|||+++ +++|+|||||||||||| +|+. .|++| +|.++|.++
T Consensus 19 ~~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~---~~~sGg~I~ldg~~~ 69 (504)
T TIGR03238 19 ERILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKR---KFSEGYEFFLDATHS 69 (504)
T ss_pred HHHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCC---CCCCCCEEEECCEEC
Confidence 468999999998 99999999999999999 7777 78888 799998664
No 442
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=98.33 E-value=6.8e-07 Score=93.34 Aligned_cols=56 Identities=16% Similarity=0.221 Sum_probs=36.1
Q ss_pred Cch-HHHHHHHHH-------------hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecCCc
Q 001709 825 SSA-SGQQQPALS-------------LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSCPY 890 (1022)
Q Consensus 825 ~LS-GqrQRvaIA-------------LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~~~ 890 (1022)
.|| |||-+++|| +||||+.++ +|...+..+...+.+. .. ..-++|+++-+.
T Consensus 136 ~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~-------------LD~~~~~~l~~~l~~~-~~-~~Q~ii~Th~~~ 200 (220)
T PF02463_consen 136 FLSGGEKSLVALALLLALQRYKPSPFLILDEVDAA-------------LDEQNRKRLADLLKEL-SK-QSQFIITTHNPE 200 (220)
T ss_dssp GS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTT-------------S-HHHHHHHHHHHHHH-TT-TSEEEEE-S-HH
T ss_pred ccccccccccccccccccccccccccccccccccc-------------cccccccccccccccc-cc-cccccccccccc
Confidence 999 999999999 899999996 6776776666555432 22 245666665555
Q ss_pred ccccC
Q 001709 891 VMPGA 895 (1022)
Q Consensus 891 V~~~~ 895 (1022)
++..+
T Consensus 201 ~~~~a 205 (220)
T PF02463_consen 201 MFEDA 205 (220)
T ss_dssp HHTT-
T ss_pred ccccc
Confidence 55443
No 443
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.33 E-value=2.3e-06 Score=93.19 Aligned_cols=31 Identities=29% Similarity=0.345 Sum_probs=24.6
Q ss_pred EeeeEEEe--EEEEEcCCCCcHHHHHHHHHcCC
Q 001709 716 KEVHFRTR--RVRLLGLEGAGKTSLFKAILGQG 746 (1022)
Q Consensus 716 kdVSL~V~--iVaLlGpNGAGKSTLLklL~GL~ 746 (1022)
++.++++. +.+|+|||||||||++.+|.-+.
T Consensus 13 ~~~~~~~~~~~~~i~G~NGsGKS~ll~Ai~~~~ 45 (270)
T cd03242 13 AELELEFEPGVTVLVGENAQGKTNLLEAISLLA 45 (270)
T ss_pred ceeEEecCCCeEEEECCCCCCHHHHHHHHHHhc
Confidence 34455555 88999999999999999986654
No 444
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=98.31 E-value=1.6e-06 Score=107.44 Aligned_cols=123 Identities=11% Similarity=0.067 Sum_probs=76.8
Q ss_pred EEEeeeEEEe--EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccchhhhcCceEEEcCCCCCCccccccccch
Q 001709 714 VFKEVHFRTR--RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADDQEGIAGGLCYCDSAGVNLQELTMEAARF 791 (1022)
Q Consensus 714 aLkdVSL~V~--iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~~~~lr~~IGyV~Q~~~~~~~lTV~~~~~ 791 (1022)
+=+|+++.-. ++.|.|||++||||+||.+.... +-...| +|||-... ..+++
T Consensus 317 Vpndi~l~~~~~~~iITGpN~gGKTt~lktigl~~--~maq~G-----------------~~vpa~~~--~~i~~----- 370 (782)
T PRK00409 317 VPKDISLGFDKTVLVITGPNTGGKTVTLKTLGLAA--LMAKSG-----------------LPIPANEP--SEIPV----- 370 (782)
T ss_pred ECceeEECCCceEEEEECCCCCCcHHHHHHHHHHH--HHHHhC-----------------CCcccCCC--ccccc-----
Confidence 3345555433 78899999999999999986543 011222 14443211 11222
Q ss_pred HHHHhccccchHHHHHHHHHhcCCccccCCCcCCch-HHHHHHHHH--------hhhccccCCChhHHHHHhhhhcccHH
Q 001709 792 KDEMWMGIRDLSRKTDLIVLVHNLSHKIPRYNYSSA-SGQQQPALS--------LLLNEAKSLGIPWVLAITNKFSVSAH 862 (1022)
Q Consensus 792 ~ENI~~g~~~~~~~v~~~L~v~gL~~~~~r~~~~LS-GqrQRvaIA--------LLLDEPTSad~~~v~~I~~~~~ld~~ 862 (1022)
.++|.. .+ |-.+.+.+..+++| ||+|++.|+ +|||||+++ .|+.
T Consensus 371 ~~~i~~-------------~i-g~~~si~~~lStfS~~m~~~~~Il~~~~~~sLvLlDE~~~G-------------tDp~ 423 (782)
T PRK00409 371 FKEIFA-------------DI-GDEQSIEQSLSTFSGHMTNIVRILEKADKNSLVLFDELGAG-------------TDPD 423 (782)
T ss_pred cceEEE-------------ec-CCccchhhchhHHHHHHHHHHHHHHhCCcCcEEEecCCCCC-------------CCHH
Confidence 333321 12 44455667888999 999999998 999999997 6667
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEEecCC
Q 001709 863 QQRAAIDAVMQAYQASPSTTEVINSCP 889 (1022)
Q Consensus 863 ~~~~~i~~ll~~~~~t~~~~vVv~~~~ 889 (1022)
++..+...+++.+.....++++.+|..
T Consensus 424 eg~ala~aile~l~~~~~~vIitTH~~ 450 (782)
T PRK00409 424 EGAALAISILEYLRKRGAKIIATTHYK 450 (782)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEECChH
Confidence 777666666666655544556665443
No 445
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.13 E-value=1.8e-06 Score=98.88 Aligned_cols=128 Identities=23% Similarity=0.261 Sum_probs=81.7
Q ss_pred CCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc------------hhh--------
Q 001709 710 DFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD------------QEG-------- 766 (1022)
Q Consensus 710 ~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~------------~~~-------- 766 (1022)
.++..+.+-||.|- +++||||||-|||||||.|+.-- +--|..=.|+++-..+ ..+
T Consensus 275 ~Gk~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~Ra-laIPpnIDvLlCEQEvvad~t~Ai~tvl~aD~kRl~lLe 353 (807)
T KOG0066|consen 275 QGKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARA-LAIPPNIDVLLCEQEVVADSTSAIDTVLKADKKRLALLE 353 (807)
T ss_pred ccceeeeccceEEEecceecccCCCCCchHHHHHHHHhhh-ccCCCCCceEeeeeeeeecCcHHHHHHHHhhHHHHHHHH
Confidence 45678889999987 99999999999999999998632 1134444455541110 001
Q ss_pred -hcCceEEEcCCCCCCccccccccchHH---HH-hccccchHHHHHHHH-HhcCCc-cccCCCcCCch-HHHHHHHHH--
Q 001709 767 -IAGGLCYCDSAGVNLQELTMEAARFKD---EM-WMGIRDLSRKTDLIV-LVHNLS-HKIPRYNYSSA-SGQQQPALS-- 836 (1022)
Q Consensus 767 -lr~~IGyV~Q~~~~~~~lTV~~~~~~E---NI-~~g~~~~~~~v~~~L-~v~gL~-~~~~r~~~~LS-GqrQRvaIA-- 836 (1022)
-++-.+-+-+ -..|+ ++|+.+ .+ +.|+...+.+++.+| -+ |++ +..+++...+| |=|.||+||
T Consensus 354 ee~~L~~q~e~-----Gd~ta-aErl~~v~~ELraiGA~sAEarARRILAGL-GFskEMQ~rPt~kFSGGWRMRvSLARA 426 (807)
T KOG0066|consen 354 EEAKLMSQIEE-----GDTTA-AERLKEVADELRAIGADSAEARARRILAGL-GFSKEMQERPTTKFSGGWRMRVSLARA 426 (807)
T ss_pred HHHHHHHHHHc-----CchHH-HHHHHHHHHHHHHhccccchhHHHHHHhhc-CCChhHhcCCccccCCceeeehhHHHH
Confidence 1111111111 12333 222222 22 334444667888888 66 876 46678888999 999999999
Q ss_pred -------hhhccccCC
Q 001709 837 -------LLLNEAKSL 845 (1022)
Q Consensus 837 -------LLLDEPTSa 845 (1022)
|.|||||+.
T Consensus 427 LflEPTLLMLDEPTNH 442 (807)
T KOG0066|consen 427 LFLEPTLLMLDEPTNH 442 (807)
T ss_pred HhcCceeeeecCCccc
Confidence 889999984
No 446
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.12 E-value=4.2e-06 Score=86.30 Aligned_cols=69 Identities=22% Similarity=0.183 Sum_probs=49.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc-hhhhcCceEEEcCCCCC--CccccccccchHHHHhcccc
Q 001709 724 RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD-QEGIAGGLCYCDSAGVN--LQELTMEAARFKDEMWMGIR 800 (1022)
Q Consensus 724 iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~-~~~lr~~IGyV~Q~~~~--~~~lTV~~~~~~ENI~~g~~ 800 (1022)
.++|+||||||||||+++|+|++ +|+.|.|.+..... ....+..+++++|.+.. ++..++ .+.+....+
T Consensus 27 ~i~I~G~tGSGKTTll~aL~~~i---~~~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~l~~~lR 98 (186)
T cd01130 27 NILISGGTGSGKTTLLNALLAFI---PPDERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTM-----ADLLRSALR 98 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHhhc---CCCCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCH-----HHHHHHHhc
Confidence 89999999999999999999999 89999999875332 11223457777763222 455677 777755443
No 447
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=97.99 E-value=7.7e-06 Score=103.05 Aligned_cols=82 Identities=13% Similarity=0.073 Sum_probs=62.9
Q ss_pred HHHHHHH-HhcCCccc-cCCCcCCch-HHHHHHHHH-----------hhhccccCCChhHHHHHhhhhcccHHHHHHHHH
Q 001709 804 RKTDLIV-LVHNLSHK-IPRYNYSSA-SGQQQPALS-----------LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAID 869 (1022)
Q Consensus 804 ~~v~~~L-~v~gL~~~-~~r~~~~LS-GqrQRvaIA-----------LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~ 869 (1022)
++++ .| .+ ||.++ +++.+.+|| ||+|||+|| |||||||++ ||+.++..+..
T Consensus 468 ~rl~-~L~~v-GL~~l~l~r~~~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtag-------------Ld~~~~~~L~~ 532 (943)
T PRK00349 468 ERLK-FLVDV-GLDYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIG-------------LHQRDNDRLIE 532 (943)
T ss_pred HHHH-Hhhcc-ccCCCCCCCchhhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccC-------------CCHHHHHHHHH
Confidence 4444 45 77 89876 799999999 999999999 899999997 77777777776
Q ss_pred HHHHHHHhCCCeEEEEecCCcccccCcccccc
Q 001709 870 AVMQAYQASPSTTEVINSCPYVMPGAVSASLS 901 (1022)
Q Consensus 870 ~ll~~~~~t~~~~vVv~~~~~V~~~~~~a~~l 901 (1022)
.+.+. .....+++++.|-...+..+|..+.+
T Consensus 533 ~L~~L-~~~G~TVIvVeH~~~~i~~aD~vi~L 563 (943)
T PRK00349 533 TLKHL-RDLGNTLIVVEHDEDTIRAADYIVDI 563 (943)
T ss_pred HHHHH-HhCCCEEEEEeCCHHHHHhCCEEEEe
Confidence 66444 55566888886655555567777776
No 448
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=97.98 E-value=3.1e-06 Score=97.07 Aligned_cols=110 Identities=17% Similarity=0.136 Sum_probs=67.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccchhhhcCceEEEcCC-----------------CCC-Cc---
Q 001709 724 RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADDQEGIAGGLCYCDSA-----------------GVN-LQ--- 782 (1022)
Q Consensus 724 iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~~~~lr~~IGyV~Q~-----------------~~~-~~--- 782 (1022)
+.+++|.||-||||-+++++|-. +|.-|.... ..++.+.+..--|-=.|+ ... +|
T Consensus 102 vlglvgtngigkstAlkilagk~---kpnlg~~~~-pp~w~~il~~frgselq~yftk~le~~lk~~~kpQyvd~ipr~~ 177 (592)
T KOG0063|consen 102 VLGLVGTNGIGKSTALKILAGKQ---KPNLGRYDN-PPDWQEILTYFRGSELQNYFTKILEDNLKAIIKPQYVDQIPRAV 177 (592)
T ss_pred hccccccCcccHHHHHHHHhCCC---CCCCCCCCC-CcchHHHhhhhhhHHHhhhhhhhccccccCcCChHHHHHHHHHH
Confidence 89999999999999999999999 898775421 111100000000000110 000 11
Q ss_pred cccccccchHHHHhccccchHHHHHHHH-HhcCCccccCCCcCCch-HHHHHHHHH---------hhhccccCC
Q 001709 783 ELTMEAARFKDEMWMGIRDLSRKTDLIV-LVHNLSHKIPRYNYSSA-SGQQQPALS---------LLLNEAKSL 845 (1022)
Q Consensus 783 ~lTV~~~~~~ENI~~g~~~~~~~v~~~L-~v~gL~~~~~r~~~~LS-GqrQRvaIA---------LLLDEPTSa 845 (1022)
..+| .+.+. ..+.+....+++ .. .|.+..+|...+|| |+-||.+|| .++|||.+-
T Consensus 178 k~~v-----~~~l~--~~~~r~~~~~~~~~~-~L~~~~~re~~~lsggelqrfaia~~~vq~advyMFDEpSsY 243 (592)
T KOG0063|consen 178 KGTV-----GSLLD--RKDERDNKEEVCDQL-DLNNLLDREVEQLSGGELQRFAIAMVCVQKADVYMFDEPSSY 243 (592)
T ss_pred HHHH-----HHHHH--HHhhcccHHHHHHHH-HHhhHHHhhhhhcccchhhhhhhhhhhhhhcceeEecCCccc
Confidence 1122 22211 111223445566 55 78888999999999 999999999 899999995
No 449
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.98 E-value=1e-05 Score=101.82 Aligned_cols=83 Identities=13% Similarity=0.098 Sum_probs=63.1
Q ss_pred HHHHHHHHhcCCccc-cCCCcCCch-HHHHHHHHH-----------hhhccccCCChhHHHHHhhhhcccHHHHHHHHHH
Q 001709 804 RKTDLIVLVHNLSHK-IPRYNYSSA-SGQQQPALS-----------LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDA 870 (1022)
Q Consensus 804 ~~v~~~L~v~gL~~~-~~r~~~~LS-GqrQRvaIA-----------LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ 870 (1022)
++++.+..+ ||..+ +++.+.+|| ||+|||+|| |||||||++ ||+++...++..
T Consensus 466 ~rl~~L~~v-gL~~l~l~r~~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtag-------------LD~~~~~~L~~~ 531 (924)
T TIGR00630 466 ERLGFLIDV-GLDYLTLSRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIG-------------LHQRDNERLINT 531 (924)
T ss_pred HHHHhHhhc-cccccccCCCcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccC-------------CCHHHHHHHHHH
Confidence 344442277 88765 799999999 999999999 899999997 777777777766
Q ss_pred HHHHHHhCCCeEEEEecCCcccccCcccccc
Q 001709 871 VMQAYQASPSTTEVINSCPYVMPGAVSASLS 901 (1022)
Q Consensus 871 ll~~~~~t~~~~vVv~~~~~V~~~~~~a~~l 901 (1022)
+.+. .+...+++++.|-..++..+|..+.+
T Consensus 532 L~~L-~~~G~TVIvVeHd~~~i~~aD~vi~L 561 (924)
T TIGR00630 532 LKRL-RDLGNTVIVVEHDEETIRAADYVIDI 561 (924)
T ss_pred HHHH-HhCCCEEEEEECCHHHHhhCCEEEEe
Confidence 6544 45566888886666666677777777
No 450
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=97.88 E-value=1.6e-05 Score=92.65 Aligned_cols=78 Identities=12% Similarity=0.041 Sum_probs=58.1
Q ss_pred CeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceE---EEEccccc----hh------hhcCceEEE
Q 001709 711 FTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSG---NLDAEADD----QE------GIAGGLCYC 774 (1022)
Q Consensus 711 ~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~---I~idg~~~----~~------~lr~~IGyV 774 (1022)
+..+++++ |++. +++|+|+||||||||+++|+|+. +++.+. |-.++.++ .. ..+..|+|+
T Consensus 142 Gi~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~---~~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~ 217 (434)
T PRK07196 142 GVNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYT---QADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAA 217 (434)
T ss_pred ceeeccce-EeEecceEEEEECCCCCCccHHHHHHhccc---CCCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEe
Confidence 46799999 9998 99999999999999999999999 887542 32333222 01 124569999
Q ss_pred cCCCCCCccccccccchHHHHhc
Q 001709 775 DSAGVNLQELTMEAARFKDEMWM 797 (1022)
Q Consensus 775 ~Q~~~~~~~lTV~~~~~~ENI~~ 797 (1022)
+|+...+..+++ .+++.+
T Consensus 218 ~~d~s~~~rl~a-----~e~a~~ 235 (434)
T PRK07196 218 PADESPLMRIKA-----TELCHA 235 (434)
T ss_pred cCCCChhhhHHH-----HHHHHH
Confidence 996555777888 777654
No 451
>COG3910 Predicted ATPase [General function prediction only]
Probab=97.87 E-value=3e-05 Score=81.57 Aligned_cols=61 Identities=11% Similarity=0.125 Sum_probs=40.9
Q ss_pred ccCCCcCCch-HHHHHHHHH--------hhhccccCCChhHHHHHhhhhcccHHHHHHHHHHHHHHHHhCCCeEEEEecC
Q 001709 818 KIPRYNYSSA-SGQQQPALS--------LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAIDAVMQAYQASPSTTEVINSC 888 (1022)
Q Consensus 818 ~~~r~~~~LS-GqrQRvaIA--------LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~~ll~~~~~t~~~~vVv~~~ 888 (1022)
..++-.+..| |+-=---+. +|||||-|+ |++..|..++.. ++.+..+..-++|.+|+
T Consensus 122 ~~~~sLh~~SHGEsf~~i~~~rf~~~GiYiLDEPEa~-------------LSp~RQlella~-l~~la~sGaQ~IiATHS 187 (233)
T COG3910 122 YGGRSLHHMSHGESFLAIFHNRFNGQGIYILDEPEAA-------------LSPSRQLELLAI-LRDLADSGAQIIIATHS 187 (233)
T ss_pred cCCcchhhhccchHHHHHHHHHhccCceEEecCcccc-------------CCHHHHHHHHHH-HHHHHhcCCeEEEEecC
Confidence 3455566778 876444444 999999997 566555555544 45556666677777888
Q ss_pred Cccc
Q 001709 889 PYVM 892 (1022)
Q Consensus 889 ~~V~ 892 (1022)
+.++
T Consensus 188 PiLl 191 (233)
T COG3910 188 PILL 191 (233)
T ss_pred hhhe
Confidence 8777
No 452
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=97.87 E-value=3.6e-05 Score=90.05 Aligned_cols=64 Identities=9% Similarity=0.082 Sum_probs=51.6
Q ss_pred CeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEc---cccc----h----hhhcCceEEEcC
Q 001709 711 FTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDA---EADD----Q----EGIAGGLCYCDS 776 (1022)
Q Consensus 711 ~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~id---g~~~----~----~~lr~~IGyV~Q 776 (1022)
+..+++.++ .|. +++|+||||||||||+++|+++. +|+.|.|.+. +.++ . ..+++.|+||+|
T Consensus 152 Gi~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~---~pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~q 227 (450)
T PRK06002 152 GVRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARAD---AFDTVVIALVGERGREVREFLEDTLADNLKKAVAVVAT 227 (450)
T ss_pred CcEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCC---CCCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEc
Confidence 467899885 787 99999999999999999999999 9999988875 3332 1 123467999999
Q ss_pred CC
Q 001709 777 AG 778 (1022)
Q Consensus 777 ~~ 778 (1022)
.+
T Consensus 228 sd 229 (450)
T PRK06002 228 SD 229 (450)
T ss_pred CC
Confidence 43
No 453
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=97.86 E-value=8.5e-06 Score=83.97 Aligned_cols=63 Identities=16% Similarity=0.056 Sum_probs=44.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc--hhhhc-CceEEEcCCCCCCccccccccchHHHHhcc
Q 001709 724 RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD--QEGIA-GGLCYCDSAGVNLQELTMEAARFKDEMWMG 798 (1022)
Q Consensus 724 iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~--~~~lr-~~IGyV~Q~~~~~~~lTV~~~~~~ENI~~g 798 (1022)
+++|+|+||||||||+++|+|++ .+ +.+++.++ ....+ ...|+.+|+...+++.++ .+|+.++
T Consensus 5 ~i~l~G~sGsGKSTl~~~la~~l---~~----~~i~gd~~~~~~~~r~~~~g~~~~~~~~~~~~~~-----~~~~~~~ 70 (176)
T PRK09825 5 SYILMGVSGSGKSLIGSKIAALF---SA----KFIDGDDLHPAKNIDKMSQGIPLTDEDRLPWLER-----LNDASYS 70 (176)
T ss_pred EEEEECCCCCCHHHHHHHHHHhc---CC----EEECCcccCCHhHHHHHhcCCCCCcccchHHHHH-----HHHHHHH
Confidence 68999999999999999999999 66 57887665 21222 235666774333666777 6666543
No 454
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=97.84 E-value=0.00017 Score=84.56 Aligned_cols=62 Identities=15% Similarity=0.149 Sum_probs=51.6
Q ss_pred CeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEcc---ccc---------hhhhcCceEEEc
Q 001709 711 FTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAE---ADD---------QEGIAGGLCYCD 775 (1022)
Q Consensus 711 ~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg---~~~---------~~~lr~~IGyV~ 775 (1022)
+..+++++ |.+. +++|+|+||+|||||+++|+|+. +|+.|.|.+.| .++ ...+++.|.||.
T Consensus 145 g~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~---~~~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~ 220 (438)
T PRK07721 145 GVRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNT---SADLNVIALIGERGREVREFIERDLGPEGLKRSIVVVA 220 (438)
T ss_pred chhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhccc---CCCeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEE
Confidence 45789999 9998 99999999999999999999999 99999998853 221 123567788888
Q ss_pred C
Q 001709 776 S 776 (1022)
Q Consensus 776 Q 776 (1022)
+
T Consensus 221 ~ 221 (438)
T PRK07721 221 T 221 (438)
T ss_pred C
Confidence 7
No 455
>KOG4540 consensus Putative lipase essential for disintegration of autophagic bodies inside the vacuole [Intracellular trafficking, secretion, and vesicular transport; Lipid transport and metabolism]
Probab=97.75 E-value=2.1e-05 Score=86.39 Aligned_cols=39 Identities=31% Similarity=0.528 Sum_probs=33.1
Q ss_pred HHHhcCCCeEEEeccChhHHHHHHHHHHHHHHHhhhcccccCCCcceEEEEeCCC
Q 001709 225 RLAQKKKRKLVLCGHSLGGAVAALATLAILRVVAASSSLKENDKVQVKCITFSQP 279 (1022)
Q Consensus 225 ~l~~~p~ykLVvTGHSLGGALAtLAAl~LLr~~~~~~~~~~~~~~~V~vyTFGqP 279 (1022)
.++.||+.+||+||||||||+|+|.++.+ .+-++||-+|
T Consensus 269 v~~~Ypda~iwlTGHSLGGa~AsLlG~~f----------------glP~VaFesP 307 (425)
T KOG4540|consen 269 VRRIYPDARIWLTGHSLGGAIASLLGIRF----------------GLPVVAFESP 307 (425)
T ss_pred HHHhCCCceEEEeccccchHHHHHhcccc----------------CCceEEecCc
Confidence 36789999999999999999999888543 3557899998
No 456
>COG5153 CVT17 Putative lipase essential for disintegration of autophagic bodies inside the vacuole [Intracellular trafficking and secretion / Lipid metabolism]
Probab=97.75 E-value=2.1e-05 Score=86.39 Aligned_cols=39 Identities=31% Similarity=0.528 Sum_probs=33.1
Q ss_pred HHHhcCCCeEEEeccChhHHHHHHHHHHHHHHHhhhcccccCCCcceEEEEeCCC
Q 001709 225 RLAQKKKRKLVLCGHSLGGAVAALATLAILRVVAASSSLKENDKVQVKCITFSQP 279 (1022)
Q Consensus 225 ~l~~~p~ykLVvTGHSLGGALAtLAAl~LLr~~~~~~~~~~~~~~~V~vyTFGqP 279 (1022)
.++.||+.+||+||||||||+|+|.++.+ .+-++||-+|
T Consensus 269 v~~~Ypda~iwlTGHSLGGa~AsLlG~~f----------------glP~VaFesP 307 (425)
T COG5153 269 VRRIYPDARIWLTGHSLGGAIASLLGIRF----------------GLPVVAFESP 307 (425)
T ss_pred HHHhCCCceEEEeccccchHHHHHhcccc----------------CCceEEecCc
Confidence 36789999999999999999999888543 3557899998
No 457
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=97.74 E-value=2.3e-05 Score=83.33 Aligned_cols=50 Identities=14% Similarity=0.008 Sum_probs=37.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEE----EEccccchhhhcCceEEEcC
Q 001709 724 RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGN----LDAEADDQEGIAGGLCYCDS 776 (1022)
Q Consensus 724 iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I----~idg~~~~~~lr~~IGyV~Q 776 (1022)
+++|.||||||||||++.|++++ +++.|.+ .+|........+..+|++++
T Consensus 35 iigi~G~~GsGKTTl~~~L~~~l---~~~~g~~~v~i~~D~~~~~~~~~~~~g~~~~ 88 (229)
T PRK09270 35 IVGIAGPPGAGKSTLAEFLEALL---QQDGELPAIQVPMDGFHLDNAVLDAHGLRPR 88 (229)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---hhccCCceEEEecccccCCHHHHHhcccccc
Confidence 89999999999999999999999 8999984 33432212233345677765
No 458
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.72 E-value=4.6e-05 Score=90.00 Aligned_cols=78 Identities=14% Similarity=0.141 Sum_probs=48.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccchhhhcCceEEEcCCCCCCccccccccchHHHHhcccc---
Q 001709 724 RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADDQEGIAGGLCYCDSAGVNLQELTMEAARFKDEMWMGIR--- 800 (1022)
Q Consensus 724 iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~~~~lr~~IGyV~Q~~~~~~~lTV~~~~~~ENI~~g~~--- 800 (1022)
+++||||||+||||++..|++.+ ....|. .+|++|.++ . +..++ .|++.+...
T Consensus 258 Vi~LvGpnGvGKTTTiaKLA~~~---~~~~G~-------------~kV~LI~~D-t--~RigA-----~EQLr~~AeilG 313 (484)
T PRK06995 258 VFALMGPTGVGKTTTTAKLAARC---VMRHGA-------------SKVALLTTD-S--YRIGG-----HEQLRIYGKILG 313 (484)
T ss_pred EEEEECCCCccHHHHHHHHHHHH---HHhcCC-------------CeEEEEeCC-c--cchhH-----HHHHHHHHHHhC
Confidence 89999999999999999999988 566553 245777773 2 22456 666654221
Q ss_pred ----chHHHHHHHH-HhcCCccccCCCcCCc
Q 001709 801 ----DLSRKTDLIV-LVHNLSHKIPRYNYSS 826 (1022)
Q Consensus 801 ----~~~~~v~~~L-~v~gL~~~~~r~~~~L 826 (1022)
......+..+ +. ++.++....+.+.
T Consensus 314 Vpv~~~~~~~Dl~~aL~-~L~d~d~VLIDTa 343 (484)
T PRK06995 314 VPVHAVKDAADLRLALS-ELRNKHIVLIDTI 343 (484)
T ss_pred CCeeccCCchhHHHHHH-hccCCCeEEeCCC
Confidence 1122334444 44 6655544455555
No 459
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.69 E-value=9.8e-05 Score=79.02 Aligned_cols=36 Identities=19% Similarity=0.214 Sum_probs=32.2
Q ss_pred CeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCC
Q 001709 711 FTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQG 746 (1022)
Q Consensus 711 ~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~ 746 (1022)
...+-+||+|+++ ++.|.||||+|||||+++|++..
T Consensus 16 ~~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~ 54 (218)
T cd03286 16 SSFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAV 54 (218)
T ss_pred CCeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHH
Confidence 3568999999996 99999999999999999999864
No 460
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=97.68 E-value=3.1e-05 Score=79.99 Aligned_cols=23 Identities=30% Similarity=0.439 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 001709 724 RVRLLGLEGAGKTSLFKAILGQG 746 (1022)
Q Consensus 724 iVaLlGpNGAGKSTLLklL~GL~ 746 (1022)
+++|.||||||||||.++|.+++
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999987
No 461
>PRK06315 type III secretion system ATPase; Provisional
Probab=97.62 E-value=9.1e-05 Score=86.74 Aligned_cols=110 Identities=11% Similarity=0.051 Sum_probs=68.2
Q ss_pred CeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCc-eEEEEcc---ccc----hhhh---cCceEEE--
Q 001709 711 FTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTIN-SGNLDAE---ADD----QEGI---AGGLCYC-- 774 (1022)
Q Consensus 711 ~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~Pts-G~I~idg---~~~----~~~l---r~~IGyV-- 774 (1022)
+..+++++ |.+. +++|+|+||||||||+++|+|+. ++.. |.|.+.| .++ ...+ ..++++|
T Consensus 151 Gi~aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~---~~~~~~vi~liGerg~ev~~~~~~~l~~~g~~~svvvv 226 (442)
T PRK06315 151 GVRCIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNA---EEADVNVIALIGERGREVREFIEGDLGEEGMKRSVIVV 226 (442)
T ss_pred eEEEEecc-ccccCCcEEEEECCCCCCcchHHHHhhccc---ccCCceEEEEECCCchHHHHHHHHHHHhcCCceEEEEE
Confidence 46789988 8888 99999999999999999999988 5433 5555533 332 1112 1335566
Q ss_pred ---cCCCCC-C-ccccccccchHHHHhcccc------chHHHHHHHH-HhcCC-----ccccCCCcCCch
Q 001709 775 ---DSAGVN-L-QELTMEAARFKDEMWMGIR------DLSRKTDLIV-LVHNL-----SHKIPRYNYSSA 827 (1022)
Q Consensus 775 ---~Q~~~~-~-~~lTV~~~~~~ENI~~g~~------~~~~~v~~~L-~v~gL-----~~~~~r~~~~LS 827 (1022)
+|++.. + +-+ + +.++.|.+..... +...++.+++ .+ +| ....+.+|+.||
T Consensus 227 ats~q~p~~rlnp~~-v-a~~IAE~~r~~g~~Vl~~~Ds~tR~a~alreV-~L~~gepp~~~gypP~~fS 293 (442)
T PRK06315 227 STSDQSSQLRLNAAY-V-GTAIAEYFRDQGKTVVLMMDSVTRFARALREV-GLAAGEPPARAGYTPSVFS 293 (442)
T ss_pred eCCCCCHHHHhhHHH-H-HHHHHHHHHHcCCCcchhhhHHHHHHHHHHHh-CcCCCCCccccCCCCchhh
Confidence 884322 2 212 2 2233555543211 2456677777 77 77 356677777775
No 462
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=97.59 E-value=4.2e-05 Score=85.14 Aligned_cols=34 Identities=9% Similarity=-0.004 Sum_probs=30.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCC--CCceEEEEcc
Q 001709 724 RVRLLGLEGAGKTSLFKAILGQGKLVR--TINSGNLDAE 760 (1022)
Q Consensus 724 iVaLlGpNGAGKSTLLklL~GL~~~~~--PtsG~I~idg 760 (1022)
+|||.||||||||||+++|.+++ . |++|.|.+-+
T Consensus 64 IIGIaG~~GSGKSTlar~L~~ll---~~~~~~g~V~vi~ 99 (290)
T TIGR00554 64 IISIAGSVAVGKSTTARILQALL---SRWPEHRKVELIT 99 (290)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH---hhcCCCCceEEEe
Confidence 99999999999999999999998 6 7788877643
No 463
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=97.58 E-value=6.8e-05 Score=77.18 Aligned_cols=47 Identities=26% Similarity=0.325 Sum_probs=33.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc----hhhhcCceEEEcC
Q 001709 724 RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD----QEGIAGGLCYCDS 776 (1022)
Q Consensus 724 iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~----~~~lr~~IGyV~Q 776 (1022)
+++|+||||||||||+|+|+++. .+ .+.+....+ ....+..+++++|
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 54 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQRE---QT---QLLVAHRYITRPASAGSENHIALSEQ 54 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhccC---CC---eEEEcCEECCCccchhHHhheeEcHH
Confidence 68899999999999999999988 55 455554322 1223345667766
No 464
>PRK08149 ATP synthase SpaL; Validated
Probab=97.52 E-value=0.00019 Score=83.78 Aligned_cols=62 Identities=11% Similarity=0.074 Sum_probs=51.3
Q ss_pred CeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCc---eEEEEccccc----hhh----hcCceEEEcC
Q 001709 711 FTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTIN---SGNLDAEADD----QEG----IAGGLCYCDS 776 (1022)
Q Consensus 711 ~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~Pts---G~I~idg~~~----~~~----lr~~IGyV~Q 776 (1022)
+..+++++ |++. +++|+|+||+|||||+++|+++. .++. |.|.+++.++ ... ...++++|+.
T Consensus 138 Gi~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~---~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~ 213 (428)
T PRK08149 138 GVRAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHS---EADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYA 213 (428)
T ss_pred CcEEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCC---CCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEE
Confidence 56799999 9998 99999999999999999999999 8886 8888887664 111 2357888887
No 465
>PRK01889 GTPase RsgA; Reviewed
Probab=97.51 E-value=0.00014 Score=82.94 Aligned_cols=75 Identities=21% Similarity=0.224 Sum_probs=54.2
Q ss_pred EEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc-hhhhcCceEEEcCCCCCCccccccccc
Q 001709 715 FKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD-QEGIAGGLCYCDSAGVNLQELTMEAAR 790 (1022)
Q Consensus 715 LkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~-~~~lr~~IGyV~Q~~~~~~~lTV~~~~ 790 (1022)
++.+.-.+. +++|+|+||+|||||+++|+|.. .++.|+|.+++... .....+.+++++| ...+.+.+.
T Consensus 185 l~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~---~~~~G~i~~~~~~g~~tt~~~~l~~l~~-~~~l~DtpG---- 256 (356)
T PRK01889 185 LDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEE---VQKTGAVREDDSKGRHTTTHRELHPLPS-GGLLIDTPG---- 256 (356)
T ss_pred HHHHHHHhhcCCEEEEECCCCccHHHHHHHHHHhc---ccceeeEEECCCCCcchhhhccEEEecC-CCeecCCCc----
Confidence 444444443 89999999999999999999999 89999999985332 3334567999998 444334455
Q ss_pred hHHHHhcc
Q 001709 791 FKDEMWMG 798 (1022)
Q Consensus 791 ~~ENI~~g 798 (1022)
..++.+.
T Consensus 257 -~~~~~l~ 263 (356)
T PRK01889 257 -MRELQLW 263 (356)
T ss_pred -hhhhccc
Confidence 5555443
No 466
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.40 E-value=8.4e-05 Score=77.76 Aligned_cols=23 Identities=30% Similarity=0.368 Sum_probs=22.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 001709 724 RVRLLGLEGAGKTSLFKAILGQG 746 (1022)
Q Consensus 724 iVaLlGpNGAGKSTLLklL~GL~ 746 (1022)
+++|+||||||||||++.|++++
T Consensus 8 vi~I~G~sGsGKSTl~~~l~~~l 30 (207)
T TIGR00235 8 IIGIGGGSGSGKTTVARKIYEQL 30 (207)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 89999999999999999999998
No 467
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.36 E-value=0.00016 Score=81.50 Aligned_cols=65 Identities=17% Similarity=0.110 Sum_probs=48.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc----------hhhhcCceEEEcCCCCCCccccccccchHH
Q 001709 724 RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD----------QEGIAGGLCYCDSAGVNLQELTMEAARFKD 793 (1022)
Q Consensus 724 iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~----------~~~lr~~IGyV~Q~~~~~~~lTV~~~~~~E 793 (1022)
+++|+||||+||||++..|++.+ .+..++|.+...|. ....+.++.+++|.....+..++ ++
T Consensus 116 vi~lvGpnGsGKTTt~~kLA~~l---~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v-----~~ 187 (318)
T PRK10416 116 VILVVGVNGVGKTTTIGKLAHKY---KAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVA-----FD 187 (318)
T ss_pred EEEEECCCCCcHHHHHHHHHHHH---HhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHH-----HH
Confidence 89999999999999999999999 88888999864442 12335678999983222454555 66
Q ss_pred HHh
Q 001709 794 EMW 796 (1022)
Q Consensus 794 NI~ 796 (1022)
++.
T Consensus 188 ~l~ 190 (318)
T PRK10416 188 AIQ 190 (318)
T ss_pred HHH
Confidence 654
No 468
>PLN02318 phosphoribulokinase/uridine kinase
Probab=97.28 E-value=0.00019 Score=86.38 Aligned_cols=61 Identities=18% Similarity=0.005 Sum_probs=46.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccchhhhcCceEEEcCCCCCCccccccccchHHHHh
Q 001709 724 RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADDQEGIAGGLCYCDSAGVNLQELTMEAARFKDEMW 796 (1022)
Q Consensus 724 iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~~~~lr~~IGyV~Q~~~~~~~lTV~~~~~~ENI~ 796 (1022)
+|+|.||||||||||++.|++++ |..|.|.+|+.... .+.+++.+|++..+.+.++ .+||.
T Consensus 67 IIGIaGpSGSGKTTLAk~LaglL----p~vgvIsmDdy~~~---~~~i~~nfD~P~a~D~d~L-----~enL~ 127 (656)
T PLN02318 67 LVGVAGPSGAGKTVFTEKVLNFM----PSIAVISMDNYNDS---SRIIDGNFDDPRLTDYDTL-----LDNIH 127 (656)
T ss_pred EEEEECCCCCcHHHHHHHHHhhC----CCcEEEEEcceecc---hhhhCccCCChhhcchhHH-----HHHHH
Confidence 99999999999999999999998 67899999874321 1235677774333665666 77764
No 469
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=97.28 E-value=7.8e-05 Score=75.75 Aligned_cols=58 Identities=12% Similarity=0.006 Sum_probs=40.2
Q ss_pred EcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc-h-hhhc-CceEEEcCCCCCCccccccccchHHHHhc
Q 001709 728 LGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD-Q-EGIA-GGLCYCDSAGVNLQELTMEAARFKDEMWM 797 (1022)
Q Consensus 728 lGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~-~-~~lr-~~IGyV~Q~~~~~~~lTV~~~~~~ENI~~ 797 (1022)
+|+||||||||+++|++.+ |.+.+++... . ..++ ...|+++|+....+++++ .+|+.+
T Consensus 1 ~G~sGsGKSTla~~la~~l-------~~~~~~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~-----~~~~~~ 61 (163)
T PRK11545 1 MGVSGSGKSAVASEVAHQL-------HAAFLDGDFLHPRRNIEKMASGEPLNDDDRKPWLQA-----LNDAAF 61 (163)
T ss_pred CCCCCCcHHHHHHHHHHHh-------CCeEEeCccCCchhhhccccCCCCCChhhHHHHHHH-----HHHHHH
Confidence 6999999999999999988 5688887443 1 2222 345788884323666777 666654
No 470
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=97.22 E-value=0.00033 Score=78.18 Aligned_cols=39 Identities=15% Similarity=0.188 Sum_probs=33.9
Q ss_pred eeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEc
Q 001709 718 VHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDA 759 (1022)
Q Consensus 718 VSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~id 759 (1022)
+++.++ .+.|.||+|||||||+++|++++ +++.|.+.+.
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~---~~~~~iv~ie 178 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEI---PKDERIITIE 178 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHHHHHHccC---CccccEEEEc
Confidence 345555 89999999999999999999999 8888888876
No 471
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=97.21 E-value=0.00046 Score=80.64 Aligned_cols=72 Identities=11% Similarity=0.007 Sum_probs=53.1
Q ss_pred CeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEcc---ccc---hhhh----cCceEEEcCC
Q 001709 711 FTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAE---ADD---QEGI----AGGLCYCDSA 777 (1022)
Q Consensus 711 ~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg---~~~---~~~l----r~~IGyV~Q~ 777 (1022)
+..+++++ |.+. +++|+|+||+|||||+++|+|+. .|+.|.+...| .++ .+.. ....++++++
T Consensus 132 G~~~id~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~---~~~~~vi~~iG~~~~ev~~~~~~~~~~~~~~~tvvv~~ 207 (422)
T TIGR02546 132 GVRAIDGL-LTCGEGQRIGIFAGAGVGKSTLLGMIARGA---SADVNVIALIGERGREVREFIEHHLGEEGRKRSVLVVS 207 (422)
T ss_pred Cceeehhh-ccccCCCEEEEECCCCCChHHHHHHHhCCC---CCCEEEEEEEccCCcCHHHHHHHHhccccccceEEEec
Confidence 46799999 9998 99999999999999999999999 89998887753 222 1111 2335677775
Q ss_pred CCCCccccc
Q 001709 778 GVNLQELTM 786 (1022)
Q Consensus 778 ~~~~~~lTV 786 (1022)
...++.++-
T Consensus 208 ~s~~p~~~r 216 (422)
T TIGR02546 208 TSDRPSLER 216 (422)
T ss_pred cccCCHHHH
Confidence 544664433
No 472
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.20 E-value=0.00039 Score=80.65 Aligned_cols=81 Identities=14% Similarity=0.185 Sum_probs=56.2
Q ss_pred cCcCCCCCCccccccccCCCcchhhcccCCCCCCCCCCcccccCceeEEEEecCCCeeEEE-----------eeeEEEe-
Q 001709 656 GAPLRRPPNLSISVFPSIDSETIDCCMEHGSGSADDEKFIRPEGLSDVFIFCTSDFTTVFK-----------EVHFRTR- 723 (1022)
Q Consensus 656 ~~Plk~l~~~~~~vf~~ld~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~aLk-----------dVSL~V~- 723 (1022)
..+++. +.-.+++|++++.++++. .........+. |+++++.|. +...+|+ |+++.|.
T Consensus 98 ~g~~R~-~~~~ER~~~Ll~v~~vn~-----~~~e~~~~ri~---Fe~LTf~YP-~er~~Le~~~~~~~~R~id~~~pig~ 167 (415)
T TIGR00767 98 EGQIRS-PKEGERYFALLKVESVNG-----DDPEKAKNRVL---FENLTPLYP-NERLRLETSTEDLSTRVLDLFAPIGK 167 (415)
T ss_pred EEEEec-cccHhHHHHHhCCCccCC-----CCccccCCCeE---EEEeeecCC-CccceeecCccccceeeeeeEEEeCC
Confidence 334443 333789999998877432 11112223344 666665554 3457896 8889888
Q ss_pred --EEEEEcCCCCcHHHHHHHHHcCC
Q 001709 724 --RVRLLGLEGAGKTSLFKAILGQG 746 (1022)
Q Consensus 724 --iVaLlGpNGAGKSTLLklL~GL~ 746 (1022)
+++|+||+|||||||+++|+..+
T Consensus 168 Gq~~~IvG~~g~GKTtL~~~i~~~I 192 (415)
T TIGR00767 168 GQRGLIVAPPKAGKTVLLQKIAQAI 192 (415)
T ss_pred CCEEEEECCCCCChhHHHHHHHHhh
Confidence 99999999999999999999987
No 473
>PRK03846 adenylylsulfate kinase; Provisional
Probab=97.18 E-value=0.00025 Score=73.82 Aligned_cols=50 Identities=22% Similarity=0.332 Sum_probs=38.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCCC-ceEEEEccccchhhhcCceEEEcC
Q 001709 724 RVRLLGLEGAGKTSLFKAILGQGKLVRTI-NSGNLDAEADDQEGIAGGLCYCDS 776 (1022)
Q Consensus 724 iVaLlGpNGAGKSTLLklL~GL~~~~~Pt-sG~I~idg~~~~~~lr~~IGyV~Q 776 (1022)
+++|+|+||||||||.++|.+.+ .+. .|.+.+++.++...+...++|.+|
T Consensus 26 ~i~i~G~~GsGKSTla~~l~~~l---~~~~~~~~~ld~d~~~~~~~~~~~~~~~ 76 (198)
T PRK03846 26 VLWFTGLSGSGKSTVAGALEEAL---HELGVSTYLLDGDNVRHGLCSDLGFSDA 76 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH---HhCCCCEEEEcCEeHHhhhhhcCCcCcc
Confidence 88999999999999999999977 443 468999876553333345777777
No 474
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=97.17 E-value=0.00068 Score=68.81 Aligned_cols=31 Identities=19% Similarity=0.128 Sum_probs=25.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEE
Q 001709 724 RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLD 758 (1022)
Q Consensus 724 iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~i 758 (1022)
+++|+||||||||||++.|++++ .+. |.+.+
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~~---~~~-~~~~~ 33 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARARL---AGD-PRVHF 33 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc---CcC-CcEEE
Confidence 57899999999999999999988 443 54443
No 475
>PRK00300 gmk guanylate kinase; Provisional
Probab=97.15 E-value=0.00031 Score=72.61 Aligned_cols=23 Identities=43% Similarity=0.644 Sum_probs=22.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 001709 724 RVRLLGLEGAGKTSLFKAILGQG 746 (1022)
Q Consensus 724 iVaLlGpNGAGKSTLLklL~GL~ 746 (1022)
+++|+||||||||||+++|++++
T Consensus 7 ~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 7 LIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 78999999999999999999987
No 476
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=97.15 E-value=0.00029 Score=80.61 Aligned_cols=52 Identities=23% Similarity=0.176 Sum_probs=35.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCCC--ce-EEEEccccc---hhhhcCceEEEcCCC
Q 001709 724 RVRLLGLEGAGKTSLFKAILGQGKLVRTI--NS-GNLDAEADD---QEGIAGGLCYCDSAG 778 (1022)
Q Consensus 724 iVaLlGpNGAGKSTLLklL~GL~~~~~Pt--sG-~I~idg~~~---~~~lr~~IGyV~Q~~ 778 (1022)
.+.|+||+||||||+|++|++++ .++ .+ .|.....++ ...++..++++.|..
T Consensus 136 lilI~GpTGSGKTTtL~aLl~~i---~~~~~~~~~Ivt~EdpiE~~~~~~~~~~~~v~Q~~ 193 (358)
T TIGR02524 136 IVFITGATGSGKSTLLAAIIREL---AEAPDSHRKILTYEAPIEFVYDEIETISASVCQSE 193 (358)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH---hhcCCCCcEEEEeCCCceEeccccccccceeeeee
Confidence 89999999999999999999987 433 34 443332222 334444567888843
No 477
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.14 E-value=0.00043 Score=90.74 Aligned_cols=56 Identities=16% Similarity=0.231 Sum_probs=43.9
Q ss_pred eeEEEeEEEEEcCCCCcHHHHHHHHH----cCCCCCCCC-ceEEEEccccc--hhhhcCceEEEcC
Q 001709 718 VHFRTRRVRLLGLEGAGKTSLFKAIL----GQGKLVRTI-NSGNLDAEADD--QEGIAGGLCYCDS 776 (1022)
Q Consensus 718 VSL~V~iVaLlGpNGAGKSTLLklL~----GL~~~~~Pt-sG~I~idg~~~--~~~lr~~IGyV~Q 776 (1022)
|.|.-++++|+|||||||||++.+|. |.. +|. .|.+++++..+ ....+..|.++|+
T Consensus 24 I~F~~~~~~I~G~NGaGKTTil~ai~~al~G~~---~~~~~g~~~i~~~~~~~~~~~~a~V~l~F~ 86 (1311)
T TIGR00606 24 IDFFSPLTILVGPNGAGKTTIIECLKYICTGDF---PPGTKGNTFVHDPKVAQETDVRAQIRLQFR 86 (1311)
T ss_pred eecccceEEEECCCCCCHHHHHHHHHHHhcCCC---CCCCCCceEecCCCcCccHhhhheeEEEEE
Confidence 55665599999999999999999994 988 885 78888876544 3345667788886
No 478
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=97.14 E-value=0.00068 Score=76.82 Aligned_cols=46 Identities=13% Similarity=0.078 Sum_probs=41.1
Q ss_pred CeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEcc
Q 001709 711 FTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAE 760 (1022)
Q Consensus 711 ~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg 760 (1022)
+..+++++ |.+. +++|+|+||+|||||+++|+|+. .|+.|.+...|
T Consensus 56 Gi~aiD~l-~~i~~Gqri~I~G~sG~GKTtLl~~Ia~~~---~~~~~vi~~iG 104 (326)
T cd01136 56 GVRAIDGL-LTVGKGQRLGIFAGSGVGKSTLLGMIARGT---TADVNVIALIG 104 (326)
T ss_pred CcEEEeee-eEEcCCcEEEEECCCCCChHHHHHHHhCCC---CCCEEEEEEEe
Confidence 46799999 9998 99999999999999999999999 89988776644
No 479
>PRK09099 type III secretion system ATPase; Provisional
Probab=97.10 E-value=0.0012 Score=77.55 Aligned_cols=46 Identities=11% Similarity=0.073 Sum_probs=42.0
Q ss_pred CeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEcc
Q 001709 711 FTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAE 760 (1022)
Q Consensus 711 ~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg 760 (1022)
+..+++++ |.+. +++|+|+||+|||||+++|+|+. .++.|.|.+.|
T Consensus 150 Gi~~ID~l-~~i~~Gq~~~I~G~sG~GKTtLl~~ia~~~---~~d~~vi~~iG 198 (441)
T PRK09099 150 GVRIVDGL-MTLGEGQRMGIFAPAGVGKSTLMGMFARGT---QCDVNVIALIG 198 (441)
T ss_pred Cceeccce-eeecCCCEEEEECCCCCCHHHHHHHHhCCC---CCCeEEEEEEc
Confidence 56799999 9988 99999999999999999999999 89998887775
No 480
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=97.08 E-value=0.00028 Score=75.36 Aligned_cols=23 Identities=13% Similarity=0.179 Sum_probs=22.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 001709 724 RVRLLGLEGAGKTSLFKAILGQG 746 (1022)
Q Consensus 724 iVaLlGpNGAGKSTLLklL~GL~ 746 (1022)
++||.|+||||||||.+.|.+++
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l 23 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALL 23 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999998
No 481
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=97.08 E-value=0.00063 Score=67.51 Aligned_cols=31 Identities=29% Similarity=0.598 Sum_probs=24.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC-CCCCCCce
Q 001709 724 RVRLLGLEGAGKTSLFKAILGQG-KLVRTINS 754 (1022)
Q Consensus 724 iVaLlGpNGAGKSTLLklL~GL~-~~~~PtsG 754 (1022)
.++|+|++|||||||++.|.|.. ..+.|+.|
T Consensus 16 ~v~i~G~~g~GKStLl~~l~~~~~~~~~~t~g 47 (173)
T cd04155 16 RILILGLDNAGKTTILKQLASEDISHITPTQG 47 (173)
T ss_pred EEEEEccCCCCHHHHHHHHhcCCCcccCCCCC
Confidence 78999999999999999999962 00146666
No 482
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.06 E-value=0.00055 Score=60.19 Aligned_cols=30 Identities=30% Similarity=0.470 Sum_probs=24.4
Q ss_pred eeeEEEe--EEEEEcCCCCcHHHHHHHHHcCC
Q 001709 717 EVHFRTR--RVRLLGLEGAGKTSLFKAILGQG 746 (1022)
Q Consensus 717 dVSL~V~--iVaLlGpNGAGKSTLLklL~GL~ 746 (1022)
.+.|+.. ++.|.|+|||||||||.+|.=++
T Consensus 16 ~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L 47 (62)
T PF13555_consen 16 TIDFDPRGDVTLITGPNGSGKSTLLDAIQTVL 47 (62)
T ss_pred EEeecCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3444433 79999999999999999998776
No 483
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.03 E-value=0.0011 Score=72.36 Aligned_cols=23 Identities=30% Similarity=0.345 Sum_probs=22.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 001709 724 RVRLLGLEGAGKTSLFKAILGQG 746 (1022)
Q Consensus 724 iVaLlGpNGAGKSTLLklL~GL~ 746 (1022)
+++|+||+|+|||||++.|.+..
T Consensus 18 r~~I~G~~G~GKTTLlr~I~n~l 40 (249)
T cd01128 18 RGLIVAPPKAGKTTLLQSIANAI 40 (249)
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 99999999999999999999988
No 484
>PRK09862 putative ATP-dependent protease; Provisional
Probab=97.03 E-value=0.00045 Score=82.32 Aligned_cols=51 Identities=20% Similarity=0.160 Sum_probs=45.5
Q ss_pred CCeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc
Q 001709 710 DFTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD 763 (1022)
Q Consensus 710 ~~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~ 763 (1022)
+...+++++++.+. .+.|+||||||||||++.|.|++ +|.+|++.+++..+
T Consensus 195 Gq~~~~~al~laa~~G~~llliG~~GsGKTtLak~L~gll---pp~~g~e~le~~~i 248 (506)
T PRK09862 195 GQEQGKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLL---PDLSNEEALESAAI 248 (506)
T ss_pred CcHHHHhhhheeccCCcEEEEECCCCCcHHHHHHHHhccC---CCCCCcEEEecchh
Confidence 44568889999988 99999999999999999999999 99999999986554
No 485
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=97.01 E-value=0.00036 Score=70.72 Aligned_cols=31 Identities=29% Similarity=0.599 Sum_probs=27.5
Q ss_pred EEEeeeEEEe--EEEEEcCCCCcHHHHHHHHHc
Q 001709 714 VFKEVHFRTR--RVRLLGLEGAGKTSLFKAILG 744 (1022)
Q Consensus 714 aLkdVSL~V~--iVaLlGpNGAGKSTLLklL~G 744 (1022)
+|+++++..+ .++|+|++|||||||++.+.+
T Consensus 9 ~~~~~~~~~~~~ki~ilG~~~~GKStLi~~l~~ 41 (190)
T cd00879 9 VLSSLGLYNKEAKILFLGLDNAGKTTLLHMLKD 41 (190)
T ss_pred HHHHhhcccCCCEEEEECCCCCCHHHHHHHHhc
Confidence 4777787776 889999999999999999998
No 486
>PRK07960 fliI flagellum-specific ATP synthase; Validated
Probab=97.01 E-value=0.00074 Score=79.35 Aligned_cols=65 Identities=12% Similarity=0.029 Sum_probs=49.2
Q ss_pred CeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCc---eEEEEccccc---hhh----hcCceEEEcCC
Q 001709 711 FTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTIN---SGNLDAEADD---QEG----IAGGLCYCDSA 777 (1022)
Q Consensus 711 ~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~Pts---G~I~idg~~~---~~~----lr~~IGyV~Q~ 777 (1022)
+..+++.+ |++. +++|+|+||+|||||+++|+|+. +|+. |.|-+++.++ .+. -.+..++|+|+
T Consensus 162 GiraID~l-l~I~~Gqri~I~G~sG~GKTTLL~~Ia~~~---~~d~iv~g~Igerg~ev~e~~~~~~~~~~~~~tvVv~~ 237 (455)
T PRK07960 162 GVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYT---QADVIVVGLIGERGREVKDFIENILGAEGRARSVVIAA 237 (455)
T ss_pred cceeeeec-ccccCCcEEEEECCCCCCccHHHHHHhCCC---CCCEEEEEEEEECCeEHHHHHHhhcCcCCCceEEEEEE
Confidence 34566666 7776 99999999999999999999999 8885 8888887654 111 13467888885
Q ss_pred CC
Q 001709 778 GV 779 (1022)
Q Consensus 778 ~~ 779 (1022)
..
T Consensus 238 ~a 239 (455)
T PRK07960 238 PA 239 (455)
T ss_pred CC
Confidence 33
No 487
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.01 E-value=0.00045 Score=76.47 Aligned_cols=42 Identities=21% Similarity=0.291 Sum_probs=35.0
Q ss_pred EEeeeEEEe--EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEc
Q 001709 715 FKEVHFRTR--RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDA 759 (1022)
Q Consensus 715 LkdVSL~V~--iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~id 759 (1022)
++++...+. +++++|+||+|||||+|.|.|.. .++.|+|...
T Consensus 152 i~~L~~~L~~k~~~~~G~sg~GKSTlin~l~~~~---~~~~g~v~~~ 195 (287)
T cd01854 152 LDELREYLKGKTSVLVGQSGVGKSTLINALLPDL---DLATGEISEK 195 (287)
T ss_pred HHHHHhhhccceEEEECCCCCCHHHHHHHHhchh---hccccceecc
Confidence 344444454 99999999999999999999999 8999998763
No 488
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=96.99 E-value=0.00058 Score=75.40 Aligned_cols=49 Identities=10% Similarity=0.002 Sum_probs=34.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc---hhhhcCceEEEcC
Q 001709 724 RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD---QEGIAGGLCYCDS 776 (1022)
Q Consensus 724 iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~---~~~lr~~IGyV~Q 776 (1022)
+++|.|+||||||||+++|++++ .+..|.+... .++ ....+..+|+.++
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll---~~~~~~vi~~-Dd~~~~~~~~r~~~g~~~~ 52 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLF---GSDLVTVICL-DDYHSLDRKGRKETGITAL 52 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhh---CCCceEEEEC-cccccCCHHHHHHhhcccc
Confidence 58999999999999999999999 7776654432 232 1222345677666
No 489
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=96.96 E-value=0.00094 Score=78.24 Aligned_cols=47 Identities=15% Similarity=0.132 Sum_probs=42.1
Q ss_pred CeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccc
Q 001709 711 FTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEA 761 (1022)
Q Consensus 711 ~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~ 761 (1022)
+..+++++ |.+. +++|+|+||+|||||+++|+|+. .++.|.+.+.|.
T Consensus 142 Gi~aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~---~~d~~vi~~iGe 191 (433)
T PRK07594 142 GIRAIDSV-ATCGEGQRVGIFSAPGVGKSTLLAMLCNAP---DADSNVLVLIGE 191 (433)
T ss_pred Cceeeeee-eecCCCCEEEEECCCCCCccHHHHHhcCCC---CCCEEEEEEECC
Confidence 56899999 9998 99999999999999999999999 899987766653
No 490
>PLN02796 D-glycerate 3-kinase
Probab=96.90 E-value=0.00083 Score=76.61 Aligned_cols=49 Identities=12% Similarity=-0.015 Sum_probs=38.4
Q ss_pred eeEEEeeeEEE---------e--EEEEEcCCCCcHHHHHHHHHcCCCCCCCC---ceEEEEccccc
Q 001709 712 TTVFKEVHFRT---------R--RVRLLGLEGAGKTSLFKAILGQGKLVRTI---NSGNLDAEADD 763 (1022)
Q Consensus 712 ~~aLkdVSL~V---------~--iVaLlGpNGAGKSTLLklL~GL~~~~~Pt---sG~I~idg~~~ 763 (1022)
..+++++++.+ + ++||+|++|||||||+++|.+++ .+. .|.|.+|+..+
T Consensus 79 ~~il~~l~~~~~~~~~G~~~~pliIGI~G~sGSGKSTLa~~L~~lL---~~~g~~~g~IsiDdfYL 141 (347)
T PLN02796 79 LWCEDQLEAHRSKFKDGDEIPPLVIGISAPQGCGKTTLVFALVYLF---NATGRRAASLSIDDFYL 141 (347)
T ss_pred HHHHHHHHHHHhhhccCCCCCCEEEEEECCCCCcHHHHHHHHHHHh---cccCCceeEEEECCccc
Confidence 34677777765 1 79999999999999999999999 664 57777775443
No 491
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=96.89 E-value=0.00046 Score=65.95 Aligned_cols=22 Identities=41% Similarity=0.738 Sum_probs=20.5
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 001709 725 VRLLGLEGAGKTSLFKAILGQG 746 (1022)
Q Consensus 725 VaLlGpNGAGKSTLLklL~GL~ 746 (1022)
|+|+|++|||||||++.|.|..
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~ 23 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQ 23 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCC
Confidence 6899999999999999999974
No 492
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=96.89 E-value=0.00087 Score=70.57 Aligned_cols=50 Identities=18% Similarity=0.109 Sum_probs=35.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccccc----hhhhcCceEEEcCC
Q 001709 724 RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEADD----QEGIAGGLCYCDSA 777 (1022)
Q Consensus 724 iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~~~----~~~lr~~IGyV~Q~ 777 (1022)
.++|+||+|||||||++.|.+.+ .+..| +.+...+. ...+....++++|+
T Consensus 3 ~i~i~G~~GsGKTTll~~l~~~l---~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~~~ 56 (199)
T TIGR00101 3 KIGVAGPVGSGKTALIEALTRAL---RQKYQ-LAVITNDIYTQEDAEFLVKNSALPPE 56 (199)
T ss_pred EEEEECCCCCCHHHHHHHHHHhh---CcCCc-EEEEeCCcCChhHHHHHHHcCCCCcC
Confidence 58999999999999999999998 66655 43332222 23334456777773
No 493
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=96.86 E-value=0.0017 Score=75.87 Aligned_cols=47 Identities=15% Similarity=0.121 Sum_probs=42.3
Q ss_pred CeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEccc
Q 001709 711 FTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAEA 761 (1022)
Q Consensus 711 ~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg~ 761 (1022)
+..+++++ |.+. +++|+|+||+|||||+++|+++. +++.|.|.+.|.
T Consensus 124 Gi~~iD~l-~~i~~Gqri~I~G~sG~GKTtLl~~i~~~~---~~~~gvi~~~Ge 173 (413)
T TIGR03497 124 GIKAIDGL-LTIGKGQRVGIFAGSGVGKSTLLGMIARNA---KADINVIALIGE 173 (413)
T ss_pred cceeeeeE-EEEcCCCEEEEECCCCCCHHHHHHHHhCCC---CCCeEEEEEEcc
Confidence 46799999 9998 99999999999999999999999 899998877653
No 494
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=96.85 E-value=0.002 Score=79.34 Aligned_cols=85 Identities=14% Similarity=0.108 Sum_probs=62.9
Q ss_pred HHHHHHHHHhcCCcc-ccCCCcCCch-HHHHHHHHH-----------hhhccccCCChhHHHHHhhhhcccHHHHHHHHH
Q 001709 803 SRKTDLIVLVHNLSH-KIPRYNYSSA-SGQQQPALS-----------LLLNEAKSLGIPWVLAITNKFSVSAHQQRAAID 869 (1022)
Q Consensus 803 ~~~v~~~L~v~gL~~-~~~r~~~~LS-GqrQRvaIA-----------LLLDEPTSad~~~v~~I~~~~~ld~~~~~~~i~ 869 (1022)
.+|...++.| ||.- -++|...+|| |+.||+-|| ++||||+.+ |-.++-.+++.
T Consensus 459 ~~RL~fL~~V-GL~YLtL~R~a~TLSGGEaQRIRLAtqiGS~LtGVlYVLDEPSIG-------------LHqrDn~rLi~ 524 (935)
T COG0178 459 KERLGFLVDV-GLGYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIG-------------LHQRDNERLIE 524 (935)
T ss_pred HHHHHHHHHc-CcCcccccccCCCcChhHHHHHHHHHHhcccceeeEEEecCCccC-------------CChhhHHHHHH
Confidence 3445444466 7764 3789999999 999999999 999999986 33344445554
Q ss_pred HHHHHHHhCCCeEEEEecCCcccccCccccccc
Q 001709 870 AVMQAYQASPSTTEVINSCPYVMPGAVSASLSW 902 (1022)
Q Consensus 870 ~ll~~~~~t~~~~vVv~~~~~V~~~~~~a~~l~ 902 (1022)
. |+.++...+|++||.|.+.++..+|..+-+.
T Consensus 525 t-L~~LRDlGNTviVVEHDedti~~AD~iIDiG 556 (935)
T COG0178 525 T-LKRLRDLGNTVIVVEHDEDTIRAADHIIDIG 556 (935)
T ss_pred H-HHHHHhcCCeEEEEecCHHHHhhcCEEEeeC
Confidence 3 4566778899999998888887777766543
No 495
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=96.82 E-value=0.0013 Score=66.30 Aligned_cols=32 Identities=25% Similarity=0.388 Sum_probs=25.4
Q ss_pred EEeeeEEEe--EEEEEcCCCCcHHHHHHHHHcCC
Q 001709 715 FKEVHFRTR--RVRLLGLEGAGKTSLFKAILGQG 746 (1022)
Q Consensus 715 LkdVSL~V~--iVaLlGpNGAGKSTLLklL~GL~ 746 (1022)
++++++++. +++|.||||+||||++.+|.-++
T Consensus 10 ~~~~~i~f~~g~~vi~G~Ng~GKStil~ai~~~L 43 (202)
T PF13476_consen 10 FKDLEIDFSPGLNVIYGPNGSGKSTILEAIRYAL 43 (202)
T ss_dssp EEEEEEE--SEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcceEEEcCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 466667666 99999999999999999987654
No 496
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=96.82 E-value=0.00099 Score=69.28 Aligned_cols=33 Identities=27% Similarity=0.464 Sum_probs=29.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEc
Q 001709 724 RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDA 759 (1022)
Q Consensus 724 iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~id 759 (1022)
.++|+|++|+|||||+|+|+|.. .++.|.+..+
T Consensus 3 kI~i~G~~g~GKSSLin~L~g~~---~~~~~~~~~~ 35 (197)
T cd04104 3 NIAVTGESGAGKSSFINALRGVG---HEEEGAAPTG 35 (197)
T ss_pred EEEEECCCCCCHHHHHHHHhccC---CCCCCccccC
Confidence 47899999999999999999998 7888887765
No 497
>PRK05922 type III secretion system ATPase; Validated
Probab=96.79 E-value=0.0033 Score=73.76 Aligned_cols=46 Identities=15% Similarity=0.154 Sum_probs=39.6
Q ss_pred CeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEcc
Q 001709 711 FTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAE 760 (1022)
Q Consensus 711 ~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg 760 (1022)
+..+++.+ +.+. +++|+|+||+|||||+++|+|.. +++.|.+...|
T Consensus 144 GIr~ID~l-l~I~~GqrigI~G~nG~GKSTLL~~Ia~~~---~~d~gvi~liG 192 (434)
T PRK05922 144 GIKAIDAF-LTLGKGQRIGVFSEPGSGKSSLLSTIAKGS---KSTINVIALIG 192 (434)
T ss_pred Cceeecce-EEEcCCcEEEEECCCCCChHHHHHHHhccC---CCCceEEEEeC
Confidence 45688886 7877 99999999999999999999998 89988776554
No 498
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=96.79 E-value=0.0018 Score=79.02 Aligned_cols=90 Identities=12% Similarity=0.099 Sum_probs=55.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCCCce--------EEEEccccchhhhcCceEEEcCCCCCCccccccccchHHHH
Q 001709 724 RVRLLGLEGAGKTSLFKAILGQGKLVRTINS--------GNLDAEADDQEGIAGGLCYCDSAGVNLQELTMEAARFKDEM 795 (1022)
Q Consensus 724 iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG--------~I~idg~~~~~~lr~~IGyV~Q~~~~~~~lTV~~~~~~ENI 795 (1022)
.+.|+||+|+|||||.++|.++. ++..| -|.+++.... +. ... ..|.
T Consensus 177 ~vlL~Gp~GtGKTTLAr~i~~~~---~~~~~~~~~~~~~fv~i~~~~l~----------------~d-~~~-----i~~~ 231 (615)
T TIGR02903 177 HIILYGPPGVGKTTAARLALEEA---KKLKHTPFAEDAPFVEVDGTTLR----------------WD-PRE-----VTNP 231 (615)
T ss_pred eEEEECCCCCCHHHHHHHHHHhh---hhccCCcccCCCCeEEEechhcc----------------CC-HHH-----HhHH
Confidence 68899999999999999999988 65544 3445442210 00 000 0111
Q ss_pred hcccc--chHHHHHHHH-HhcCCccccCCCcCCch-HHHHHHHHHhhhccccCCC
Q 001709 796 WMGIR--DLSRKTDLIV-LVHNLSHKIPRYNYSSA-SGQQQPALSLLLNEAKSLG 846 (1022)
Q Consensus 796 ~~g~~--~~~~~v~~~L-~v~gL~~~~~r~~~~LS-GqrQRvaIALLLDEPTSad 846 (1022)
.++.. .....+...+ .+ |+.+..+..+.++| | .|+|||....+
T Consensus 232 llg~~~~~~~~~a~~~l~~~-gl~~~~~g~v~~asgG-------vL~LDEi~~Ld 278 (615)
T TIGR02903 232 LLGSVHDPIYQGARRDLAET-GVPEPKTGLVTDAHGG-------VLFIDEIGELD 278 (615)
T ss_pred hcCCccHHHHHHHHHHHHHc-CCCchhcCchhhcCCC-------eEEEeccccCC
Confidence 22211 1122344556 55 88888888888888 8 69999955443
No 499
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=96.75 E-value=0.0018 Score=75.69 Aligned_cols=46 Identities=13% Similarity=0.075 Sum_probs=40.5
Q ss_pred CeeEEEeeeEEEe---EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEcc
Q 001709 711 FTTVFKEVHFRTR---RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAE 760 (1022)
Q Consensus 711 ~~~aLkdVSL~V~---iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg 760 (1022)
+..+++ .+|.+. +++|+|+||+|||||+++|+++. +|+.|.|.+.|
T Consensus 127 Gi~aiD-~~~~i~~Gq~i~I~G~sG~GKTtLl~~I~~~~---~~~~gvi~~iG 175 (418)
T TIGR03498 127 GVRVID-TFLPLCRGQRLGIFAGSGVGKSTLLSMLARNT---DADVVVIALVG 175 (418)
T ss_pred ccEEEe-eeccccCCcEEEEECCCCCChHHHHHHHhCCC---CCCEEEEEEEe
Confidence 456776 588887 99999999999999999999999 89999887765
No 500
>PRK04863 mukB cell division protein MukB; Provisional
Probab=96.75 E-value=0.0015 Score=86.14 Aligned_cols=42 Identities=19% Similarity=0.021 Sum_probs=36.2
Q ss_pred EeeeEEEe--EEEEEcCCCCcHHHHHHHHHcCCCCCCCCceEEEEcc
Q 001709 716 KEVHFRTR--RVRLLGLEGAGKTSLFKAILGQGKLVRTINSGNLDAE 760 (1022)
Q Consensus 716 kdVSL~V~--iVaLlGpNGAGKSTLLklL~GL~~~~~PtsG~I~idg 760 (1022)
.+..|++. +++|+|+|||||||+|++|++++ .|+.|.+.+++
T Consensus 19 ~~~~~~f~~~~~~l~G~NGaGKSTll~ai~~~l---~~~~~~~~f~~ 62 (1486)
T PRK04863 19 FARTFDLDELVTTLSGGNGAGKSTTMAAFVTAL---IPDLTLLHFRN 62 (1486)
T ss_pred cceEEEecCCeEEEECCCCCCHHHHHHHHHccc---cCCCCeEEECC
Confidence 34456665 89999999999999999999999 89999998884
Done!