Query 001710
Match_columns 1022
No_of_seqs 690 out of 6604
Neff 9.5
Searched_HMMs 29240
Date Tue Mar 26 15:49:04 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001710.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1009-1012//hhsearch_pdb/001710hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 1.0 1 1 720.3 45.7 644 2-666 4-754 (768)
2 3rgz_A Protein brassinosteroid 1.0 1 1 573.3 34.4 564 53-630 101-744 (768)
3 1ziw_A TOLL-like receptor 3; i 1.0 1 1 531.5 39.8 590 40-638 4-634 (680)
4 1ziw_A TOLL-like receptor 3; i 1.0 1 1 513.6 35.7 594 55-654 7-627 (680)
5 3t6q_A CD180 antigen; protein- 1.0 1 1 485.9 34.2 534 57-632 17-566 (606)
6 3j0a_A TOLL-like receptor 5; m 1.0 1 1 481.9 38.5 525 57-632 9-566 (844)
7 4eco_A Uncharacterized protein 1.0 1 1 481.9 26.0 514 7-605 27-603 (636)
8 3vq2_A TLR4, TOLL-like recepto 1.0 1 1 470.3 30.0 530 56-632 15-564 (606)
9 4ecn_A Leucine-rich repeat pro 1.0 1 1 467.4 31.6 525 5-627 264-865 (876)
10 3j0a_A TOLL-like receptor 5; m 1.0 1 1 465.3 40.1 516 40-605 14-563 (844)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=720.35 Aligned_cols=644 Identities=32% Similarity=0.490 Sum_probs=454.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCEEEEECCCCCCCCC---CCCCCCCCCCC
Q ss_conf 544479755899999999623589874348999999985501128828999299997399976563---48888788874
Q 001710 2 ATVINNLTTDQSALLAFKADVIDSRSVLANNWSISYPICNWVGISCGARHHRVVALNLSSFSLGGI---IPPHLGNLSFL 78 (1022)
Q Consensus 2 ~~~~~~~~~d~~~ll~~k~~~~~~~~~~~~~w~~~~~~c~w~gv~c~~~~~~v~~l~l~~~~~~~~---~~~~l~~l~~L 78 (1022)
|++..+.++|++||++||+++.|+. .+ ++|..+++||.|.||+|+ .++|++|+|+++++.|. +++++.++++|
T Consensus 4 ~~~~~~~~~~~~all~~k~~~~~~~-~l-~~W~~~~~~C~w~gv~C~--~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L 79 (768)
T 3rgz_A 4 ASPSQSLYREIHQLISFKDVLPDKN-LL-PDWSSNKNPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGL 79 (768)
T ss_dssp ----CCHHHHHHHHHHHHTTCSCTT-SS-TTCCTTSCGGGSTTEEEE--TTEEEEEECTTSCCCEEHHHHHHHTTTCTTC
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCC-CC-CCCCCCCCCCCCCCEEEC--CCCEEEEECCCCCCCCCCCCCCHHHHCCCCC
T ss_conf 7656687899999999996678962-14-687899987688413878--9927898778998677557669657316802
Q ss_pred CEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCEEECCCCCCCCCCCHHH-CCCCCCCEEEC
Q ss_conf 3885558854688888743124455012333324798885--55545665435434466688840110-17456452312
Q 001710 79 VSLDISENNFYGHLPNELGKLRRLRLINFAYNELSGSFPS--WIGILSRLQILSFHNNSFTDRIPDFL-LNLSKLEFLDL 155 (1022)
Q Consensus 79 ~~L~Ls~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~--~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L 155 (1022)
+.++++.+.+. .+|..++.+++|++|+|++|.+.+.+|. .++.+++|++|+|++|.+.+..|..+ ..+++|++|++
T Consensus 80 ~~l~~~~~~~~-~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L 158 (768)
T 3rgz_A 80 ESLFLSNSHIN-GSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDL 158 (768)
T ss_dssp CEEECTTSCEE-ECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEEC
T ss_pred CCCCCCCCCCC-CCCHHHCCCCCCCEEECCCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCCEEEC
T ss_conf 24678688867-87033245788998989898578707896787278899989896882677479778563889998989
Q ss_pred CCCCCCCCCCCC---C-CCCCCCCEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCC
Q ss_conf 575346666776---4-455344100212435555894554888777054433626678971102777664897313335
Q 001710 156 MENSLSGSLPND---I-RLPKLEKLYLGSNDFFGQIPSSLSECTHLQTLWLADNKFSGRLPENIGNLSQLTDLNLAQNNL 231 (1022)
Q Consensus 156 s~n~l~~~~~~~---~-~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 231 (1022)
++|.+.+..+.. + .+++|++|++++|.+.+..+ +..+++|++|++++|++++.+|. +..+++|++|++++|.+
T Consensus 159 s~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l 235 (768)
T 3rgz_A 159 SANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKL 235 (768)
T ss_dssp CSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB--CTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCC
T ss_pred CCCCCCCCCCHHHHHHCCCCCCCEEECCCCCCCCCCC--CCCCCCCCEEECCCCCCCCCCCC-CCCCCCCCEEECCCCCC
T ss_conf 7983588587155664358988989897880346578--45478689898928827887711-12699999897948858
Q ss_pred CCCCHHHHCCCCCCCEEECCCCCCC----------------------CCCCCCCCCC-CCCCEEECCCCEEEEECCCCCC
Q ss_conf 6877133208699889992486355----------------------7689654255-6552440235433322263125
Q 001710 232 QGDMPTAIGNLQMLEHLNLGMNNLS----------------------GPVPPTIFNI-STIRLINLIENQLSGHLPLTLG 288 (1022)
Q Consensus 232 ~~~~~~~~~~l~~L~~L~Ls~N~l~----------------------~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~ 288 (1022)
++..|..+..+++|++|++++|.++ +.+|..+... ++|+.|++++|.+.+.+|..+.
T Consensus 236 ~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~ 315 (768)
T 3rgz_A 236 SGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFG 315 (768)
T ss_dssp CSCHHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGG
T ss_pred CCCCCHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHCCCCCEEECCCCCCCCCCCHHHH
T ss_conf 78165777448888989898886657167243687898979178557725888884468688998968967784236775
Q ss_pred CCCCCCCEEECCCCCCCCCCCCC-CCCCCCCCEEECCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCHHC
Q ss_conf 89999528983284147668832-11234464222799956866995322212-02300243454567899998421100
Q 001710 289 HSLPNLEFLTLFGNNLIGTIPNS-ITNASKLIGLDLSSNLFSGHIPHTFGNLR-FLRFLNLMFNSLTTESSPADQWSFLS 366 (1022)
Q Consensus 289 ~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~l~~N~i~~~~~~~~~~~~~~ 366 (1022)
.+++|++|++++|++.+.+|.. +..+++|+.|++++|.+.+..|..+..++ +|+.|++++|.++.....
T Consensus 316 -~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~-------- 386 (768)
T 3rgz_A 316 -SCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILP-------- 386 (768)
T ss_dssp -GCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCT--------
T ss_pred -CCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHHHHCCCCEEECCCCCCCCCCCH--------
T ss_conf -58776677897885257379788724888878848478437623098986322771998627874787676--------
Q ss_pred CCCC--CCCCCEEECCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCC
Q ss_conf 1346--67765676345888653585213321000110023431344677110277751099900787889633112465
Q 001710 367 SLTN--CRSLTELALNVNPLRGILPPFIGNFSASLRKFEAIKCELKGSIPQEIGNLSGLMFLKLDDNELNGTIPTTVGRF 444 (1022)
Q Consensus 367 ~l~~--~~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~l 444 (1022)
.+.. +++|++|++++|.+.+..|..+..+ ..|+.+++.+|.+++.+|..+..+++|+.|++++|.+.+..|..+..+
T Consensus 387 ~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l-~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l 465 (768)
T 3rgz_A 387 NLCQNPKNTLQELYLQNNGFTGKIPPTLSNC-SELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYV 465 (768)
T ss_dssp TTTCSTTCCCCEEECCSSEEEEECCGGGGGC-TTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGC
T ss_pred HHHHCCCCCCCEEECCCCCCCCCCCHHHHCC-CCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHCCC
T ss_conf 6653324776189897784654248777568-987989895884668546777449988989897881547189788287
Q ss_pred CCCCEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCEECCCCCCCCCCCCCCCEEEC
Q ss_conf 45765892246788987733334333452313786114756544567532351304586401126995201221355853
Q 001710 445 QQLQGLSLYDNDLQGSIPYYLCHLERLSQLLLNGNNLSGAIPACLGSLTSLRELHLGSNTLTYSIPSSLWSLEYILYVNL 524 (1022)
Q Consensus 445 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l 524 (1022)
++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+.+|..++.+++|+.|++++|++.+.+|..+..+++|+.|++
T Consensus 466 ~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L 545 (768)
T 3rgz_A 466 KTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDL 545 (768)
T ss_dssp TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEEC
T ss_pred CCCEEEEECCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEEC
T ss_conf 77329990199513758878816998998975399518968768856899998989789433748877708898998989
Q ss_pred CCCCCCCCCCCC--------------------------------------------------------------------
Q ss_conf 588688886100--------------------------------------------------------------------
Q 001710 525 SSNSLSGPLPSS-------------------------------------------------------------------- 536 (1022)
Q Consensus 525 ~~N~l~~~~~~~-------------------------------------------------------------------- 536 (1022)
++|.+.+.+|..
T Consensus 546 s~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~ 625 (768)
T 3rgz_A 546 NTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTS 625 (768)
T ss_dssp CSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECC
T ss_pred CCCCCCCCCCHHHHCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCEECCCCC
T ss_conf 88846882795786042122320134542111134443222233222100135563232002321100113310046274
Q ss_pred --CCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCEEECCCCEECCCCCCHHHHCCC
Q ss_conf --112333352503575025864200116665551013571213577822212133442321150403556820221135
Q 001710 537 --IQHLKVLINLDLSRNQLSGDIPITISGLKDLATLSLAGNQFNGPIPESFGSLISLESLDVSSNNISGKIPKSLEALLY 614 (1022)
Q Consensus 537 --~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 614 (1022)
+..+++|+.|+|++|++++.+|..|+.++.|+.|+|++|.++|.+|..|..+++|+.|||++|++++.+|..+..++.
T Consensus 626 ~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~ 705 (768)
T 3rgz_A 626 PTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTM 705 (768)
T ss_dssp CSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCC
T ss_pred HHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCC
T ss_conf 33403356657978588015558778841415787848688038878967847778998989788023868867757887
Q ss_pred CCEEECCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 5379843781501069999988776566667723569987699998678998
Q 001710 615 LKKLNVSYNRLEGEIPIKGPFRNFSAQSFSGNYALCGPPRLQVPPCKEDKGK 666 (1022)
Q Consensus 615 L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~n~~~c~~p~~~~~pc~~~~~~ 666 (1022)
|+.|++++|+++|.+|..+.+.++...++.||+++||+| +++|......
T Consensus 706 L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~---l~~C~~~~~~ 754 (768)
T 3rgz_A 706 LTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYP---LPRCDPSNAD 754 (768)
T ss_dssp CSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTT---SCCCCSCC--
T ss_pred CCEEECCCCCCCCCCCCCHHHCCCCHHHHCCCCHHCCCC---CCCCCCCCCC
T ss_conf 897879688155608996010248977756983210887---7678887668
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=573.29 Aligned_cols=564 Identities=32% Similarity=0.466 Sum_probs=432.6
Q ss_pred CEEEEECCCCCCCCCCCC--CCCCCCCCCEEECCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCC---CCCCCCC
Q ss_conf 299997399976563488--88788874388555885468888874-31244550123333247988855---5545665
Q 001710 53 RVVALNLSSFSLGGIIPP--HLGNLSFLVSLDISENNFYGHLPNEL-GKLRRLRLINFAYNELSGSFPSW---IGILSRL 126 (1022)
Q Consensus 53 ~v~~l~l~~~~~~~~~~~--~l~~l~~L~~L~Ls~n~~~~~~p~~~-~~l~~L~~L~Ls~n~l~~~~p~~---~~~l~~L 126 (1022)
+++.|+|+++.+.+.+|. .++.++.|++|+|++|.+.+.+|..+ .++++|++|+|++|.+++..|.. +..+++|
T Consensus 101 ~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L 180 (768)
T 3rgz_A 101 SLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGEL 180 (768)
T ss_dssp TCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTC
T ss_pred CCCEEECCCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCHHHHHHCCCCCC
T ss_conf 89989898985787078967872788999898968826774797785638899989897983588587155664358988
Q ss_pred CEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCEEECCCCC
Q ss_conf 43543446668884011017456452312575346666776445534410021243555589455488877705443362
Q 001710 127 QILSFHNNSFTDRIPDFLLNLSKLEFLDLMENSLSGSLPNDIRLPKLEKLYLGSNDFFGQIPSSLSECTHLQTLWLADNK 206 (1022)
Q Consensus 127 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 206 (1022)
++|++++|.+.+..+. ..+++|++|++++|.+.+..+....+++|++|++++|.+.+..|..+..+++|++|++++|.
T Consensus 181 ~~L~Ls~n~l~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~ 258 (768)
T 3rgz_A 181 KHLAISGNKISGDVDV--SRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQ 258 (768)
T ss_dssp CEEECCSSEEESCCBC--TTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSC
T ss_pred CEEECCCCCCCCCCCC--CCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCC
T ss_conf 9898978803465784--54786898989288278877111269999989794885878165777448888989898886
Q ss_pred CCCCCCCCCCCCCCCCEEEECCCCCCCCCHHHHCCC-CCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCEEEEECCC
Q ss_conf 667897110277766489731333568771332086-9988999248635576896542556552440235433322263
Q 001710 207 FSGRLPENIGNLSQLTDLNLAQNNLQGDMPTAIGNL-QMLEHLNLGMNNLSGPVPPTIFNISTIRLINLIENQLSGHLPL 285 (1022)
Q Consensus 207 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 285 (1022)
+.+.+|.. .+++|++|++++|.+++.+|..+... ++|++|++++|.+++.+|..+..+++|+.|++++|.+.+.+|.
T Consensus 259 l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~ 336 (768)
T 3rgz_A 259 FVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPM 336 (768)
T ss_dssp CEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCH
T ss_pred CCCCCCCC--CCCCCCEEECCCCCCCCCCCHHHHHHCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCH
T ss_conf 65716724--3687898979178557725888884468688998968967784236775587766778978852573797
Q ss_pred CCCCCCCCCCEEECCCCCCCCCCCCCCCCCC-CCCEEECCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 1258999952898328414766883211234-4642227999568669953222--120230024345456789999842
Q 001710 286 TLGHSLPNLEFLTLFGNNLIGTIPNSITNAS-KLIGLDLSSNLFSGHIPHTFGN--LRFLRFLNLMFNSLTTESSPADQW 362 (1022)
Q Consensus 286 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~--l~~L~~L~l~~N~i~~~~~~~~~~ 362 (1022)
..+..+++|++|++++|++.+..|..+..+. +|+.|++++|.+.+..+..+.. +++|+.|++++|.++...+
T Consensus 337 ~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p----- 411 (768)
T 3rgz_A 337 DTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIP----- 411 (768)
T ss_dssp HHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECC-----
T ss_pred HHHHCCCCCCEEECCCCCCCCCCCHHHHHHHCCCCEEECCCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCCCCC-----
T ss_conf 887248888788484784376230989863227719986278747876766653324776189897784654248-----
Q ss_pred CHHCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCC
Q ss_conf 11001346677656763458886535852133210001100234313446771102777510999007878896331124
Q 001710 363 SFLSSLTNCRSLTELALNVNPLRGILPPFIGNFSASLRKFEAIKCELKGSIPQEIGNLSGLMFLKLDDNELNGTIPTTVG 442 (1022)
Q Consensus 363 ~~~~~l~~~~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~ 442 (1022)
..+..+++|+.|++++|.+.+..|..++.+ ..|+.+++.+|.+.+.+|..+..+++|++|++++|.+.+..|..+.
T Consensus 412 ---~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l-~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~ 487 (768)
T 3rgz_A 412 ---PTLSNCSELVSLHLSFNYLSGTIPSSLGSL-SKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLS 487 (768)
T ss_dssp ---GGGGGCTTCCEEECCSSEEESCCCGGGGGC-TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGG
T ss_pred ---HHHHCCCCCCEEECCCCCCCCCCCHHHHCC-CCCCEEECCCCCCCCCCCHHHCCCCCCEEEEECCCCCCCCCCHHHH
T ss_conf ---777568987989895884668546777449-9889898978815471897882877732999019951375887881
Q ss_pred CCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCEECCCCCCC----------
Q ss_conf 6545765892246788987733334333452313786114756544567532351304586401126995----------
Q 001710 443 RFQQLQGLSLYDNDLQGSIPYYLCHLERLSQLLLNGNNLSGAIPACLGSLTSLRELHLGSNTLTYSIPSS---------- 512 (1022)
Q Consensus 443 ~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~---------- 512 (1022)
.+++|+.|++++|++.+.+|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|++.+.+|..
T Consensus 488 ~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~ 567 (768)
T 3rgz_A 488 NCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAA 567 (768)
T ss_dssp GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCC
T ss_pred CCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCHHHHCCCCHHHH
T ss_conf 69989989753995189687688568999989897894337488777088989989898884688279578604212232
Q ss_pred ------------------------------------------------------------CCCCCCCCEEECCCCCCCCC
Q ss_conf ------------------------------------------------------------20122135585358868888
Q 001710 513 ------------------------------------------------------------LWSLEYILYVNLSSNSLSGP 532 (1022)
Q Consensus 513 ------------------------------------------------------------~~~l~~L~~L~l~~N~l~~~ 532 (1022)
+..+++|+.|++++|++++.
T Consensus 568 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ 647 (768)
T 3rgz_A 568 NFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGY 647 (768)
T ss_dssp STTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSC
T ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCEECCCCCHHHHCCCCCCEEECCCCCCCCC
T ss_conf 01345421111344432222332221001355632320023211001133100462743340335665797858801555
Q ss_pred CCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCEEECCCCEECCCCCCHHHHC
Q ss_conf 61001123333525035750258642001166655510135712135778222121334423211504035568202211
Q 001710 533 LPSSIQHLKVLINLDLSRNQLSGDIPITISGLKDLATLSLAGNQFNGPIPESFGSLISLESLDVSSNNISGKIPKSLEAL 612 (1022)
Q Consensus 533 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 612 (1022)
+|..+..++.|+.|+|++|++++.+|..|+++++|+.|+|++|+++|.+|..+..+++|+.|++++|+++|.+|.. ..+
T Consensus 648 ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~ 726 (768)
T 3rgz_A 648 IPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM-GQF 726 (768)
T ss_dssp CCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS-SSG
T ss_pred CCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCC-HHH
T ss_conf 8778841415787848688038878967847778998989788023868867757887897879688155608996-010
Q ss_pred CCCCEEECCCCCCEEECC
Q ss_conf 355379843781501069
Q 001710 613 LYLKKLNVSYNRLEGEIP 630 (1022)
Q Consensus 613 ~~L~~l~l~~N~l~~~~~ 630 (1022)
..+....+.+|+.-|-.|
T Consensus 727 ~~~~~~~~~gN~~Lcg~~ 744 (768)
T 3rgz_A 727 ETFPPAKFLNNPGLCGYP 744 (768)
T ss_dssp GGSCGGGGCSCTEEESTT
T ss_pred CCCCHHHHCCCCHHCCCC
T ss_conf 248977756983210887
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=1.00 E-value=1 Score=531.54 Aligned_cols=590 Identities=21% Similarity=0.222 Sum_probs=499.4
Q ss_pred CCCEEEEECC---------CCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 5501128828---------9992999973999765634888878887438855588546888887431244550123333
Q 001710 40 CNWVGISCGA---------RHHRVVALNLSSFSLGGIIPPHLGNLSFLVSLDISENNFYGHLPNELGKLRRLRLINFAYN 110 (1022)
Q Consensus 40 c~w~gv~c~~---------~~~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~Ls~n 110 (1022)
|.+..|.|.. -..+++.|+|+++++.+..+..|.+++.|++|+|++|.+++..|..|+++++|++|+|++|
T Consensus 4 ~~~~~~~cs~~~L~~ip~~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 83 (680)
T 1ziw_A 4 VSHEVADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN 83 (680)
T ss_dssp CBSSEEECCSSCCSSCCSCSCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSS
T ss_pred EECCEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCC
T ss_conf 67874487779805264124888768889899778759788717876758878899648569778740667688889998
Q ss_pred CCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCCC-CCCCCCCEECCCCCCCCCCCC
Q ss_conf 2479888555545665435434466688840110174564523125753466667764-455344100212435555894
Q 001710 111 ELSGSFPSWIGILSRLQILSFHNNSFTDRIPDFLLNLSKLEFLDLMENSLSGSLPNDI-RLPKLEKLYLGSNDFFGQIPS 189 (1022)
Q Consensus 111 ~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~ 189 (1022)
.+....+..|+.+++|++|+|++|.+++..+..|..+++|++|++++|.+.+..+..+ .+++|++|++++|.+.+..+.
T Consensus 84 ~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 163 (680)
T 1ziw_A 84 ELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSE 163 (680)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHH
T ss_pred CCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCHH
T ss_conf 56756854530388889898989966853966741567888898989952466721112455677797458843652978
Q ss_pred CCC--CCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCHHHHC---CCCCCCEEECCCCCCCCCCCCCCC
Q ss_conf 554--888777054433626678971102777664897313335687713320---869988999248635576896542
Q 001710 190 SLS--ECTHLQTLWLADNKFSGRLPENIGNLSQLTDLNLAQNNLQGDMPTAIG---NLQMLEHLNLGMNNLSGPVPPTIF 264 (1022)
Q Consensus 190 ~l~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~---~l~~L~~L~Ls~N~l~~~~~~~~~ 264 (1022)
.+. .+++|++|++++|++++..+..+..+.+|+.|+++++.+.......+. ..++|+.|++++|.+++..+..+.
T Consensus 164 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~ 243 (680)
T 1ziw_A 164 ELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFL 243 (680)
T ss_dssp HHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTG
T ss_pred HHHCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEECCCCCCCCCCHHHHH
T ss_conf 86244666321798889825655815553223445543056646805677787775315100887457743646866751
Q ss_pred CCCC--CCEEECCCCEEEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCC-----CCC----
Q ss_conf 5565--52440235433322263125899995289832841476688321123446422279995686-----699----
Q 001710 265 NIST--IRLINLIENQLSGHLPLTLGHSLPNLEFLTLFGNNLIGTIPNSITNASKLIGLDLSSNLFSG-----HIP---- 333 (1022)
Q Consensus 265 ~l~~--L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-----~~~---- 333 (1022)
+++. |+.|++++|.+.+..+..+ ..+++|++|++++|++.+..+..+..+++|+.|++++|...+ ..|
T Consensus 244 ~l~~~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~ 322 (680)
T 1ziw_A 244 GLKWTNLTMLDLSYNNLNVVGNDSF-AWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDD 322 (680)
T ss_dssp GGGGSCCCEEECTTSCCCEECTTTT-TTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECT
T ss_pred CCCCCCCCEEECCCCCCCCCCCCCC-CCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCHHHHCCCCCCCCCCCCH
T ss_conf 4676778887787887675680211-674105685577885676586562678885577363313213333355454386
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCEEECCCCCCCCC--CCCCCCCCC-CCCCHHCCCCCCCC
Q ss_conf 532221202300243454567899998421100134667765676345888653--585213321-00011002343134
Q 001710 334 HTFGNLRFLRFLNLMFNSLTTESSPADQWSFLSSLTNCRSLTELALNVNPLRGI--LPPFIGNFS-ASLRKFEAIKCELK 410 (1022)
Q Consensus 334 ~~~~~l~~L~~L~l~~N~i~~~~~~~~~~~~~~~l~~~~~L~~L~L~~N~l~~~--~~~~~~~~~-~~L~~l~~~~~~~~ 410 (1022)
..|..+++|+.|++++|.++.+... .+..+++|++|++++|.+... ....+.... ..|+.+++.+|.+.
T Consensus 323 ~~~~~l~~L~~L~l~~n~l~~~~~~--------~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~ 394 (680)
T 1ziw_A 323 FSFQWLKCLEHLNMEDNDIPGIKSN--------MFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKIS 394 (680)
T ss_dssp TTTTTCTTCCEEECCSCCBCCCCTT--------TTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCC
T ss_pred HHCCCCCCCCEEECCCCCCCCCCHH--------HHCCCCCCCEEECCCCCHHHHHCCHHHHCCCCCCCCCEEECCCCCCC
T ss_conf 5624677788887989826878855--------74065687289887980144323532202455686766889999777
Q ss_pred CCCCCCCCCCCCCEEEEEECCCCCCCCC-CCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCC--CCCCC
Q ss_conf 4677110277751099900787889633-11246545765892246788987733334333452313786114--75654
Q 001710 411 GSIPQEIGNLSGLMFLKLDDNELNGTIP-TTVGRFQQLQGLSLYDNDLQGSIPYYLCHLERLSQLLLNGNNLS--GAIPA 487 (1022)
Q Consensus 411 ~~~p~~l~~l~~L~~L~l~~N~l~~~~~-~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~--~~~~~ 487 (1022)
+..|..|..+++|+.|++++|.+.+..+ ..|..+++|+.|++++|++.+..+..|..++.|+.|++++|.+. +..|.
T Consensus 395 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~ 474 (680)
T 1ziw_A 395 KIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPS 474 (680)
T ss_dssp EECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSC
T ss_pred EECHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEECHHHHHCCCCCCCCHHCCCCCCCCCCCCC
T ss_conf 67754420778888886778757543575532575461278448997542276455007543101101464422566776
Q ss_pred CCCCCCCCCEEECCCCEECCCCCCCCCCCCCCCEEECCCCCCCCCCC--------CCCCCCCCCCEEECCCCCCCCCCCC
Q ss_conf 45675323513045864011269952012213558535886888861--------0011233335250357502586420
Q 001710 488 CLGSLTSLRELHLGSNTLTYSIPSSLWSLEYILYVNLSSNSLSGPLP--------SSIQHLKVLINLDLSRNQLSGDIPI 559 (1022)
Q Consensus 488 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~--------~~~~~l~~L~~L~L~~N~l~~~~~~ 559 (1022)
.|..+++|+.|++++|++++..+..|..+++|++|++++|.+++..+ ..|.++++|+.|+|++|+++...+.
T Consensus 475 ~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~ 554 (680)
T 1ziw_A 475 PFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVE 554 (680)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred CCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHCCCCCCHHHCCCCCCCEEECCCCCCCCCCHH
T ss_conf 45557878999899998776794463455346888588997300000004677414233799888888999978877977
Q ss_pred CCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCEEECCCCEECCCCCCHHH-HCCCCCEEECCCCCCEEECCCCCCCCCC
Q ss_conf 011666555101357121357782221213344232115040355682022-1135537984378150106999998877
Q 001710 560 TISGLKDLATLSLAGNQFNGPIPESFGSLISLESLDVSSNNISGKIPKSLE-ALLYLKKLNVSYNRLEGEIPIKGPFRNF 638 (1022)
Q Consensus 560 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~l~l~~N~l~~~~~~~~~~~~~ 638 (1022)
.|.++++|+.|+|++|++++..+..|..+++|+.|+|++|++++..+..+. .+++|+.+++++|+|.|.|+....|..|
T Consensus 555 ~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~~~~~~~~ 634 (680)
T 1ziw_A 555 VFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNW 634 (680)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCCCSSEECC
T ss_pred HCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCCEEECCCCCCCCCCCCHHHHHHH
T ss_conf 73466675223899997776797683789888889899996870596683011466577983189702577668999999
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=1.00 E-value=1 Score=513.60 Aligned_cols=594 Identities=22% Similarity=0.226 Sum_probs=507.9
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCC
Q ss_conf 99973999765634888878887438855588546888887431244550123333247988855554566543543446
Q 001710 55 VALNLSSFSLGGIIPPHLGNLSFLVSLDISENNFYGHLPNELGKLRRLRLINFAYNELSGSFPSWIGILSRLQILSFHNN 134 (1022)
Q Consensus 55 ~~l~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n 134 (1022)
..+++++++++ .+|..+. +.+++|+|++|.+++..+..|.++++|++|+|++|.+.+..|..++.+++|++|+|++|
T Consensus 7 ~~~~cs~~~L~-~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 83 (680)
T 1ziw_A 7 EVADCSHLKLT-QVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN 83 (680)
T ss_dssp SEEECCSSCCS-SCCSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSS
T ss_pred CEEECCCCCCC-CCCCCCC--CCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCC
T ss_conf 74487779805-2641248--88768889899778759788717876758878899648569778740667688889998
Q ss_pred CCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCCC-CCCCCCCEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCC
Q ss_conf 6688840110174564523125753466667764-455344100212435555894554888777054433626678971
Q 001710 135 SFTDRIPDFLLNLSKLEFLDLMENSLSGSLPNDI-RLPKLEKLYLGSNDFFGQIPSSLSECTHLQTLWLADNKFSGRLPE 213 (1022)
Q Consensus 135 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~ 213 (1022)
.+++..+..|..+++|++|++++|.+.+..+..+ .+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+.
T Consensus 84 ~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 163 (680)
T 1ziw_A 84 ELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSE 163 (680)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHH
T ss_pred CCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCHH
T ss_conf 56756854530388889898989966853966741567888898989952466721112455677797458843652978
Q ss_pred CCC--CCCCCCEEEECCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCCCCC---CCCCCCEEECCCCEEEEECCCCCC
Q ss_conf 102--777664897313335687713320869988999248635576896542---556552440235433322263125
Q 001710 214 NIG--NLSQLTDLNLAQNNLQGDMPTAIGNLQMLEHLNLGMNNLSGPVPPTIF---NISTIRLINLIENQLSGHLPLTLG 288 (1022)
Q Consensus 214 ~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~---~l~~L~~L~l~~n~l~~~~~~~~~ 288 (1022)
.+. .+++|+.|++++|.+++..+..+..+++|+.|++++|.+.......+. ..++|+.|++++|.+.+..+..+.
T Consensus 164 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~ 243 (680)
T 1ziw_A 164 ELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFL 243 (680)
T ss_dssp HHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTG
T ss_pred HHHCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEECCCCCCCCCCHHHHH
T ss_conf 86244666321798889825655815553223445543056646805677787775315100887457743646866751
Q ss_pred CCC--CCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH--
Q ss_conf 899--9952898328414766883211234464222799956866995322212023002434545678999984211--
Q 001710 289 HSL--PNLEFLTLFGNNLIGTIPNSITNASKLIGLDLSSNLFSGHIPHTFGNLRFLRFLNLMFNSLTTESSPADQWSF-- 364 (1022)
Q Consensus 289 ~~l--~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~i~~~~~~~~~~~~-- 364 (1022)
.+ ++|+.|++++|++.+..+..+..+++|+.|++++|.+.+..+..|..+++|+.|++++|.....-. ......
T Consensus 244 -~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~-~~~lp~i~ 321 (680)
T 1ziw_A 244 -GLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSIS-LASLPKID 321 (680)
T ss_dssp -GGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC-------CCEEC
T ss_pred -CCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCHHHHCCCC-CCCCCCCC
T ss_conf -4676778887787887675680211674105685577885676586562678885577363313213333-35545438
Q ss_pred HCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCC--CCCCCCCCC--CCCEEEEEECCCCCCCCCCC
Q ss_conf 00134667765676345888653585213321000110023431344--677110277--75109990078788963311
Q 001710 365 LSSLTNCRSLTELALNVNPLRGILPPFIGNFSASLRKFEAIKCELKG--SIPQEIGNL--SGLMFLKLDDNELNGTIPTT 440 (1022)
Q Consensus 365 ~~~l~~~~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~~~~~~~~~--~~p~~l~~l--~~L~~L~l~~N~l~~~~~~~ 440 (1022)
-..+..+++|++|++++|.+.+..+..+..+ ..|+.+++.+|.+.. .....+..+ +.|+.|++++|++.++.+..
T Consensus 322 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~ 400 (680)
T 1ziw_A 322 DFSFQWLKCLEHLNMEDNDIPGIKSNMFTGL-INLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDA 400 (680)
T ss_dssp TTTTTTCTTCCEEECCSCCBCCCCTTTTTTC-TTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTT
T ss_pred HHHCCCCCCCCEEECCCCCCCCCCHHHHCCC-CCCCEEECCCCCHHHHHCCHHHHCCCCCCCCCEEECCCCCCCEECHHH
T ss_conf 6562467778888798982687885574065-687289887980144323532202455686766889999777677544
Q ss_pred CCCCCCCCEEEEECCCCCCCC-CCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCEEC--CCCCCCCCCCC
Q ss_conf 246545765892246788987-733334333452313786114756544567532351304586401--12699520122
Q 001710 441 VGRFQQLQGLSLYDNDLQGSI-PYYLCHLERLSQLLLNGNNLSGAIPACLGSLTSLRELHLGSNTLT--YSIPSSLWSLE 517 (1022)
Q Consensus 441 ~~~l~~L~~L~L~~n~i~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~--~~~~~~~~~l~ 517 (1022)
|..+++|+.|++++|.+.+.. +..|..+++|+.|++++|.+....+..|..+++|+.|++++|.+. +..|..+..++
T Consensus 401 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~ 480 (680)
T 1ziw_A 401 FSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLR 480 (680)
T ss_dssp TTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCT
T ss_pred HHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEECHHHHHCCCCCCCCHHCCCCCCCCCCCCCCCCCCC
T ss_conf 20778888886778757543575532575461278448997542276455007543101101464422566776455578
Q ss_pred CCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCC--------CCCCCCCCCCEECCCCCCCCCCCCCCCCCCC
Q ss_conf 13558535886888861001123333525035750258642--------0011666555101357121357782221213
Q 001710 518 YILYVNLSSNSLSGPLPSSIQHLKVLINLDLSRNQLSGDIP--------ITISGLKDLATLSLAGNQFNGPIPESFGSLI 589 (1022)
Q Consensus 518 ~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~--------~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 589 (1022)
+|+.|++++|.+++..+..|.++++|+.|++++|++++..+ ..|.++++|+.|+|++|.++...+..|.+++
T Consensus 481 ~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~ 560 (680)
T 1ziw_A 481 NLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLF 560 (680)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred CCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHCCCCCCHHHCCCCCCCEEECCCCCCCCCCHHHCCCCC
T ss_conf 78999899998776794463455346888588997300000004677414233799888888999978877977734666
Q ss_pred CCCEEECCCCEECCCCCCHHHHCCCCCEEECCCCCCEEECCCCC--CCCCCCCCCCCCCCCCCCCCC
Q ss_conf 34423211504035568202211355379843781501069999--988776566667723569987
Q 001710 590 SLESLDVSSNNISGKIPKSLEALLYLKKLNVSYNRLEGEIPIKG--PFRNFSAQSFSGNYALCGPPR 654 (1022)
Q Consensus 590 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~l~~N~l~~~~~~~~--~~~~~~~~~~~~n~~~c~~p~ 654 (1022)
+|+.|+|++|++++.++..+..+++|+.|++++|++.+..+... .+..+......+|++.|+.+.
T Consensus 561 ~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~ 627 (680)
T 1ziw_A 561 ELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES 627 (680)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred CCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCCEEECCCCCCCCCCCC
T ss_conf 7522389999777679768378988888989999687059668301146657798318970257766
No 5
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=1.00 E-value=1 Score=485.93 Aligned_cols=534 Identities=22% Similarity=0.203 Sum_probs=387.6
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCC
Q ss_conf 97399976563488887888743885558854688888743124455012333324798885555456654354344666
Q 001710 57 LNLSSFSLGGIIPPHLGNLSFLVSLDISENNFYGHLPNELGKLRRLRLINFAYNELSGSFPSWIGILSRLQILSFHNNSF 136 (1022)
Q Consensus 57 l~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l 136 (1022)
++..+.++. .+|..+. ..+++|+|++|.+++..|..|.++++|++|+|++|.+.+..|..|..+++|++|+|++|.+
T Consensus 17 ~~c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l 93 (606)
T 3t6q_A 17 YNCENLGLN-EIPGTLP--NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPL 93 (606)
T ss_dssp EECTTSCCS-SCCTTSC--TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred EECCCCCCC-CCCCCCC--CCCCEEECCCCCCCCCCHHHHCCCCCCEEEECCCCCCCEECHHHCCCCCCCCEEECCCCCC
T ss_conf 777779806-2867789--8675898158734717966725676652897889835524851136843367644889856
Q ss_pred CCCCCHHHCCCCCCCEEECCCCCCCCCCCCCC-CCCCCCCEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCC
Q ss_conf 88840110174564523125753466667764-45534410021243555589455488877705443362667897110
Q 001710 137 TDRIPDFLLNLSKLEFLDLMENSLSGSLPNDI-RLPKLEKLYLGSNDFFGQIPSSLSECTHLQTLWLADNKFSGRLPENI 215 (1022)
Q Consensus 137 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~ 215 (1022)
++..|..|..+++|++|++++|.+.+..+..+ .+++|++|++++|++.+.....+..+++|++|++++|++++..+..+
T Consensus 94 ~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 173 (606)
T 3t6q_A 94 IFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDM 173 (606)
T ss_dssp SEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHH
T ss_pred CCCCHHHHCCCCCCCEEECCCCCCCCCCCCHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHH
T ss_conf 54586552344215376521267665781012237822389887983411476545687656877765684455496563
Q ss_pred CCCCCCC--EEEECCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCEEEE----ECCCCCCC
Q ss_conf 2777664--89731333568771332086998899924863557689654255655244023543332----22631258
Q 001710 216 GNLSQLT--DLNLAQNNLQGDMPTAIGNLQMLEHLNLGMNNLSGPVPPTIFNISTIRLINLIENQLSG----HLPLTLGH 289 (1022)
Q Consensus 216 ~~l~~L~--~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~n~l~~----~~~~~~~~ 289 (1022)
..+++|+ .|++++|.+++..+..+.. ..|+.|++++|.. .+..+.++.++....+..+.+.+ .++...+.
T Consensus 174 ~~l~~L~~l~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~~~~---~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~ 249 (606)
T 3t6q_A 174 SSLQQATNLSLNLNGNDIAGIEPGAFDS-AVFQSLNFGGTQN---LLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFE 249 (606)
T ss_dssp HTTTTCCSEEEECTTCCCCEECTTTTTT-CEEEEEECTTCSC---HHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGG
T ss_pred HHHCCCCEEEEECCCCCCCCCCHHHHHH-CCCCCCCCCCCHH---HHHHHHHCCCCCHHHEECHHHCCCCCCCCCHHHHC
T ss_conf 3221564038966798147548667300-1001355677266---77776513356442200201102641226866743
Q ss_pred CC--CCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCC
Q ss_conf 99--9952898328414766883211234464222799956866995322212023002434545678999984211001
Q 001710 290 SL--PNLEFLTLFGNNLIGTIPNSITNASKLIGLDLSSNLFSGHIPHTFGNLRFLRFLNLMFNSLTTESSPADQWSFLSS 367 (1022)
Q Consensus 290 ~l--~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~i~~~~~~~~~~~~~~~ 367 (1022)
.+ .+|+.|++++|.+.+..+..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|.++.+.. ..
T Consensus 250 ~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~--------~~ 320 (606)
T 3t6q_A 250 GLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQ--------IS 320 (606)
T ss_dssp GGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGG--------GC
T ss_pred HHHCCCEEEEEEECCCCCCCCHHHHCCCCCCCEEECCCCCCC-CCCHHHCCCCCCCEEECCCCCCCCCCH--------HH
T ss_conf 032075059994457658557777445667888956288267-778214165468889771687686760--------23
Q ss_pred CCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCC-CCCCCCCCCEEEEEECCCCCCCC--CCCCCCC
Q ss_conf 34667765676345888653585213321000110023431344677-11027775109990078788963--3112465
Q 001710 368 LTNCRSLTELALNVNPLRGILPPFIGNFSASLRKFEAIKCELKGSIP-QEIGNLSGLMFLKLDDNELNGTI--PTTVGRF 444 (1022)
Q Consensus 368 l~~~~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~p-~~l~~l~~L~~L~l~~N~l~~~~--~~~~~~l 444 (1022)
+..+++|++|++++|.+.+ .++ ..+..+++|++|++++|.+.+.. +..+..+
T Consensus 321 ~~~l~~L~~L~l~~n~~~~-------------------------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l 375 (606)
T 3t6q_A 321 ASNFPSLTHLSIKGNTKRL-------------------------ELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNL 375 (606)
T ss_dssp GGGCTTCSEEECCSCSSCC-------------------------BCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTC
T ss_pred HHCCCCCCEEECCCCCCCC-------------------------CCCHHHHHCCCCCCEEECCCCCCCCCCCCCHHCCCC
T ss_conf 3015768988898997444-------------------------346245506675898878899666456752210567
Q ss_pred CCCCEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCC-CCCCCCCCCEEECCCCEECCCCCCCCCCCCCCCEEE
Q ss_conf 4576589224678898773333433345231378611475654-456753235130458640112699520122135585
Q 001710 445 QQLQGLSLYDNDLQGSIPYYLCHLERLSQLLLNGNNLSGAIPA-CLGSLTSLRELHLGSNTLTYSIPSSLWSLEYILYVN 523 (1022)
Q Consensus 445 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 523 (1022)
++|+.|++++|.+.+..+..|..+++|+.|++++|.+.+..+. .|..+++|+.|++++|.+.+..+..+..+++|++|+
T Consensus 376 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 455 (606)
T 3t6q_A 376 SHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLN 455 (606)
T ss_dssp TTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEE
T ss_pred CCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEE
T ss_conf 88898989899677578887347745776878888677756521241765588898989855776877873788788898
Q ss_pred CCCCCCCCC---CCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCEEECCCCE
Q ss_conf 358868888---61001123333525035750258642001166655510135712135778222121334423211504
Q 001710 524 LSSNSLSGP---LPSSIQHLKVLINLDLSRNQLSGDIPITISGLKDLATLSLAGNQFNGPIPESFGSLISLESLDVSSNN 600 (1022)
Q Consensus 524 l~~N~l~~~---~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 600 (1022)
+++|.+++. .+..+..+++|+.|++++|++++..|..|.++++|+.|+|++|++++..|..|..+++| .|++++|+
T Consensus 456 L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~ 534 (606)
T 3t6q_A 456 LQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNH 534 (606)
T ss_dssp CTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSC
T ss_pred CCCCCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCC-EEECCCCC
T ss_conf 98998885434543124048876688799996670686463265678889898980686896684756651-89876894
Q ss_pred ECCCCCCHHHHCCCCCEEECCCCCCEEECCCC
Q ss_conf 03556820221135537984378150106999
Q 001710 601 ISGKIPKSLEALLYLKKLNVSYNRLEGEIPIK 632 (1022)
Q Consensus 601 l~~~~~~~~~~l~~L~~l~l~~N~l~~~~~~~ 632 (1022)
+++.+|..+..+++|+.+++++|+|.|.|+..
T Consensus 535 l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~ 566 (606)
T 3t6q_A 535 ISIILPSLLPILSQQRTINLRQNPLDCTCSNI 566 (606)
T ss_dssp CCCCCGGGHHHHHTSSEEECTTCCEECSGGGH
T ss_pred CCCCCHHHCCCCCCCCEEECCCCCCCCCCCCH
T ss_conf 14268766256778788967799861667757
No 6
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=481.94 Aligned_cols=525 Identities=21% Similarity=0.159 Sum_probs=364.0
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCEEECCCCC
Q ss_conf 973999765634888878887438855588546888887431244550123333247988-8555545665435434466
Q 001710 57 LNLSSFSLGGIIPPHLGNLSFLVSLDISENNFYGHLPNELGKLRRLRLINFAYNELSGSF-PSWIGILSRLQILSFHNNS 135 (1022)
Q Consensus 57 l~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~-p~~~~~l~~L~~L~Ls~n~ 135 (1022)
++.++++++. +|. ..+.|++|||++|.+++..|..|.++++|++|+|++|...+.+ |..|..+++|++|+|++|.
T Consensus 9 ~dcs~~~L~~-vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~ 84 (844)
T 3j0a_A 9 AFYRFCNLTQ-VPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSK 84 (844)
T ss_dssp EEESCCCSSC-CCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCC
T ss_pred EECCCCCCCC-CCC---CCCCCCEEECCCCCCCCCCHHHCCCCCCCEEEECCCCCCCCCCCHHHHCCCCCCCEEECCCCC
T ss_conf 9823799777-898---999868888877867832966776621370886789977444197785378778888798995
Q ss_pred CCCCCCHHHCCCCCCCEEECCCCCCCCCCCCC--C-CCCCCCCEECCCCCCCCCCC-CCCCCCCCCCEEECCCCCCCCCC
Q ss_conf 68884011017456452312575346666776--4-45534410021243555589-45548887770544336266789
Q 001710 136 FTDRIPDFLLNLSKLEFLDLMENSLSGSLPND--I-RLPKLEKLYLGSNDFFGQIP-SSLSECTHLQTLWLADNKFSGRL 211 (1022)
Q Consensus 136 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~--~-~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~ 211 (1022)
+.+..|..|..+++|+.|+|++|.+.+..+.. + .+++|++|++++|.+.+..+ ..|+.+++|++|++++|.+++..
T Consensus 85 l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~ 164 (844)
T 3j0a_A 85 IYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVC 164 (844)
T ss_dssp CCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCC
T ss_pred CCCCCHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHHHCCCCCEEECCCCCCCEEC
T ss_conf 85319767157866587017678897340467645566799988898786423256655763889898989898477667
Q ss_pred CCCCCCC--CCCCEEEECCCCCCCCCHHHHCCCCC------CCEEECCCCCCCCCCCCCCCCC---CCCCEEECCCCEEE
Q ss_conf 7110277--76648973133356877133208699------8899924863557689654255---65524402354333
Q 001710 212 PENIGNL--SQLTDLNLAQNNLQGDMPTAIGNLQM------LEHLNLGMNNLSGPVPPTIFNI---STIRLINLIENQLS 280 (1022)
Q Consensus 212 ~~~~~~l--~~L~~L~L~~n~l~~~~~~~~~~l~~------L~~L~Ls~N~l~~~~~~~~~~l---~~L~~L~l~~n~l~ 280 (1022)
+..+..+ ++|+.|+++.|.+.+..+..+..+.+ |+.|++++|.+++..+..+... .++..+.++.+.+.
T Consensus 165 ~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~ 244 (844)
T 3j0a_A 165 EHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMG 244 (844)
T ss_dssp SGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCB
T ss_pred HHHCCCCCCCCCCEEECCCCCCCCCCCCCHHHCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCCEECCCCCCC
T ss_conf 88753556775035789788666554553322377223574007965788686567788876427441001121212234
Q ss_pred EE--------CCCCCCCC--CCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 22--------26312589--999528983284147668832112344642227999568669953222120230024345
Q 001710 281 GH--------LPLTLGHS--LPNLEFLTLFGNNLIGTIPNSITNASKLIGLDLSSNLFSGHIPHTFGNLRFLRFLNLMFN 350 (1022)
Q Consensus 281 ~~--------~~~~~~~~--l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N 350 (1022)
.. .....+.+ .++|+.|++++|.+.+..+..+..+++|+.|+|++|.+.+..+..|..+++|+.|++++|
T Consensus 245 ~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N 324 (844)
T 3j0a_A 245 AGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYN 324 (844)
T ss_dssp CSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESC
T ss_pred CCCCCCCCCCCCHHHHHCCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCC
T ss_conf 66444566889855652555478618989799455158634525899999989798189879688368889998989899
Q ss_pred CCCCCCCCCCCCCHHCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCEEEEEEC
Q ss_conf 45678999984211001346677656763458886535852133210001100234313446771102777510999007
Q 001710 351 SLTTESSPADQWSFLSSLTNCRSLTELALNVNPLRGILPPFIGNFSASLRKFEAIKCELKGSIPQEIGNLSGLMFLKLDD 430 (1022)
Q Consensus 351 ~i~~~~~~~~~~~~~~~l~~~~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~p~~l~~l~~L~~L~l~~ 430 (1022)
.++.+... .+..+++|+.|++++|.+.. ..+..|..+++|+.|++++
T Consensus 325 ~l~~~~~~--------~~~~l~~L~~L~L~~N~i~~-------------------------~~~~~~~~l~~L~~L~Ls~ 371 (844)
T 3j0a_A 325 LLGELYSS--------NFYGLPKVAYIDLQKNHIAI-------------------------IQDQTFKFLEKLQTLDLRD 371 (844)
T ss_dssp CCSCCCSC--------SCSSCTTCCEEECCSCCCCC-------------------------CCSSCSCSCCCCCEEEEET
T ss_pred CCCCCCHH--------HHCCCCCCCEEECCCCCCCC-------------------------CCHHHHCCCCCCCEEECCC
T ss_conf 78851878--------84689999989898998776-------------------------2866613788899988989
Q ss_pred CCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCC-CCCCCCCCCCEEECCCCEECCCC
Q ss_conf 87889633112465457658922467889877333343334523137861147565-44567532351304586401126
Q 001710 431 NELNGTIPTTVGRFQQLQGLSLYDNDLQGSIPYYLCHLERLSQLLLNGNNLSGAIP-ACLGSLTSLRELHLGSNTLTYSI 509 (1022)
Q Consensus 431 N~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~ 509 (1022)
|.+.+.. .+++|+.|++++|++.. .|.. ...++.|++++|.+.+... ..+..+++|+.|++++|++++..
T Consensus 372 N~l~~i~-----~~~~L~~L~l~~N~l~~-l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~ 442 (844)
T 3j0a_A 372 NALTTIH-----FIPSIPDIFLSGNKLVT-LPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCS 442 (844)
T ss_dssp CCSCCCS-----SCCSCSEEEEESCCCCC-CCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCC
T ss_pred CCCCCCC-----CCCCCCHHCCCCCCCCC-CCCC---CCCCCEEECCCCCCCCCCHHHHHHCCCCCCEEECCCCCCCCCC
T ss_conf 9778616-----88982320058997231-4554---5543122145675345755666512776666667787125555
Q ss_pred CC-CCCCCCCCCEEECCCCCCCC-----CCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCC
Q ss_conf 99-52012213558535886888-----8610011233335250357502586420011666555101357121357782
Q 001710 510 PS-SLWSLEYILYVNLSSNSLSG-----PLPSSIQHLKVLINLDLSRNQLSGDIPITISGLKDLATLSLAGNQFNGPIPE 583 (1022)
Q Consensus 510 ~~-~~~~l~~L~~L~l~~N~l~~-----~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 583 (1022)
+. .+..+++|+.|++++|.++. ..+..|.++++|+.|+|++|.+++..|..|.++++|+.|+|++|+|++..+.
T Consensus 443 ~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~ 522 (844)
T 3j0a_A 443 GDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHN 522 (844)
T ss_dssp SSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHCCCHHHHHEEECCCCCCCCCCHH
T ss_conf 43335668731002477773644101355355544755365777889856553955704501221569999978745710
Q ss_pred CCCCCCCCCEEECCCCEECCCCCCHHHHCCCCCEEECCCCCCEEECCCC
Q ss_conf 2212133442321150403556820221135537984378150106999
Q 001710 584 SFGSLISLESLDVSSNNISGKIPKSLEALLYLKKLNVSYNRLEGEIPIK 632 (1022)
Q Consensus 584 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~l~~N~l~~~~~~~ 632 (1022)
.+. ++|+.|+|++|++++.+|..+ .+|+.+++++|++.|.|+..
T Consensus 523 ~~~--~~L~~L~Ls~N~l~~~~~~~~---~~L~~l~l~~Np~~C~c~~~ 566 (844)
T 3j0a_A 523 DLP--ANLEILDISRNQLLAPNPDVF---VSLSVLDITHNKFICECELS 566 (844)
T ss_dssp CCC--SCCCEEEEEEECCCCCCSCCC---SSCCEEEEEEECCCCSSSCC
T ss_pred HHH--CCCCEEECCCCCCCCCCHHHH---CCCCEEEECCCCCCCCCCCH
T ss_conf 110--045588898884788896683---77688993199702536618
No 7
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=1.00 E-value=1 Score=481.91 Aligned_cols=514 Identities=19% Similarity=0.264 Sum_probs=255.5
Q ss_pred CCHHHHHHHHHHHHHCCCCCCCCCC-------CCCCCCCCCCC---EEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCC
Q ss_conf 9755899999999623589874348-------99999998550---1128828999299997399976563488887888
Q 001710 7 NLTTDQSALLAFKADVIDSRSVLAN-------NWSISYPICNW---VGISCGARHHRVVALNLSSFSLGGIIPPHLGNLS 76 (1022)
Q Consensus 7 ~~~~d~~~ll~~k~~~~~~~~~~~~-------~w~~~~~~c~w---~gv~c~~~~~~v~~l~l~~~~~~~~~~~~l~~l~ 76 (1022)
....|+.||.+|+.++.++.+.... +|+.+++||.| .||+|+.. +||++|+|+++++.|.+|+++++++
T Consensus 27 ~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~~~c~w~~~~GV~C~~~-~~V~~L~L~~~~l~g~lp~~l~~L~ 105 (636)
T 4eco_A 27 EYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNSN-GRVTGLSLEGFGASGRVPDAIGQLT 105 (636)
T ss_dssp HHHHHHHHHHHHHHHTTGGGCCCCC------CCCCCSSCGGGTTCCTTEEECTT-CCEEEEECTTSCCEEEECGGGGGCT
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCC-CCEEEEEECCCCCCCCCCHHHHCCC
T ss_conf 677889999999997589974547767765788777998000147798487678-9788998427665772885785684
Q ss_pred CCCEEECCCCCCC------C------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCEEECCCCCCCCCCCHH
Q ss_conf 7438855588546------8------88887431244550123333247988855554-566543543446668884011
Q 001710 77 FLVSLDISENNFY------G------HLPNELGKLRRLRLINFAYNELSGSFPSWIGI-LSRLQILSFHNNSFTDRIPDF 143 (1022)
Q Consensus 77 ~L~~L~Ls~n~~~------~------~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~-l~~L~~L~Ls~n~l~~~~~~~ 143 (1022)
+|++|+|++|.+. + .+|... +..|+ ++++.|.+.+.+|..+.. +..+..+++....+..
T Consensus 106 ~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~----- 177 (636)
T 4eco_A 106 ELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKK----- 177 (636)
T ss_dssp TCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCC-----
T ss_pred CCEEEECCCCCCCCCCCCCCCCCCCCCCHHHH--HHHHH-HHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCC-----
T ss_conf 51189876885123774334532356733888--88887-65777554117066677887777642755465410-----
Q ss_pred HCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEECC--CCCCCCCCCCCCCCCCCCCEEECCCCCCCCC-----------
Q ss_conf 017456452312575346666776445534410021--2435555894554888777054433626678-----------
Q 001710 144 LLNLSKLEFLDLMENSLSGSLPNDIRLPKLEKLYLG--SNDFFGQIPSSLSECTHLQTLWLADNKFSGR----------- 210 (1022)
Q Consensus 144 ~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~L~~L~l~--~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~----------- 210 (1022)
.....++.+.+. .|++++ +|..++.+++|++|+|++|.+++.
T Consensus 178 ------------------------~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~ 232 (636)
T 4eco_A 178 ------------------------SSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENS 232 (636)
T ss_dssp ------------------------CCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTS
T ss_pred ------------------------CCCCCHHHHHHCCCCCCCCC-CCHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCC
T ss_conf ------------------------13344213001013677750-78777256478789886882366423221222221
Q ss_pred ------CCCCCC--CCCCCCEEEECCCCCCCCCHHHHCCCCCCCEEECCCCC-CCC-CCCCCCCCC------CCCCEEEC
Q ss_conf ------971102--77766489731333568771332086998899924863-557-689654255------65524402
Q 001710 211 ------LPENIG--NLSQLTDLNLAQNNLQGDMPTAIGNLQMLEHLNLGMNN-LSG-PVPPTIFNI------STIRLINL 274 (1022)
Q Consensus 211 ------~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~-~~~~~~~~l------~~L~~L~l 274 (1022)
+|..+. .+++|++|++++|.+.+.+|..+.++++|++|++++|+ +++ .+|..+..+ ++|+.|++
T Consensus 233 ~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L 312 (636)
T 4eco_A 233 EYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYI 312 (636)
T ss_dssp HHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEEC
T ss_pred CHHCCCCCHHHHHCCCCCCCEEEECCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEEC
T ss_conf 00102486322004468788898048857762838883499978897847988766533578875430465788888989
Q ss_pred CCCEEEEECCC--CCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCC-CCCCCCCCCC
Q ss_conf 35433322263--12589999528983284147668832112344642227999568669953222120-2300243454
Q 001710 275 IENQLSGHLPL--TLGHSLPNLEFLTLFGNNLIGTIPNSITNASKLIGLDLSSNLFSGHIPHTFGNLRF-LRFLNLMFNS 351 (1022)
Q Consensus 275 ~~n~l~~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~-L~~L~l~~N~ 351 (1022)
++|++. .+|. .+. .+++|++|++++|++.+.+| .+..+++|+.|++++|.+. .+|..+..+++ |+.|++++|.
T Consensus 313 ~~n~l~-~ip~~~~l~-~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~ 388 (636)
T 4eco_A 313 GYNNLK-TFPVETSLQ-KMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNK 388 (636)
T ss_dssp CSSCCS-SCCCHHHHT-TCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSC
T ss_pred CCCCCC-CCCCHHHHC-CCCCCCEEECCCCCCCCCHH-HHCCCCCCCEEECCCCCCC-CCCHHHHHHCCCCCEEECCCCC
T ss_conf 799377-667655542-57888989690880705166-6478898898989899403-0337565102368689852982
Q ss_pred CCCCCCCCCCCCHHCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCEEEEEECC
Q ss_conf 56789999842110013466776567634588865358521332100011002343134467711027775109990078
Q 001710 352 LTTESSPADQWSFLSSLTNCRSLTELALNVNPLRGILPPFIGNFSASLRKFEAIKCELKGSIPQEIGNLSGLMFLKLDDN 431 (1022)
Q Consensus 352 i~~~~~~~~~~~~~~~l~~~~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~p~~l~~l~~L~~L~l~~N 431 (1022)
++.++... ....+++|+.|++++|.+.+..|..+... ......+++|+.|++++|
T Consensus 389 l~~lp~~~-------~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~------------------~~~~~~~~~L~~L~Ls~N 443 (636)
T 4eco_A 389 LKYIPNIF-------DAKSVSVMSAIDFSYNEIGSVDGKNFDPL------------------DPTPFKGINVSSINLSNN 443 (636)
T ss_dssp CSSCCSCC-------CTTCSSCEEEEECCSSCTTTTTTCSSCTT------------------CSSCCCCCCEEEEECCSS
T ss_pred CCCCCHHH-------HHCCCCCCCEEECCCCCCCCCCHHHHCCC------------------CCCCCCCCCCCEEECCCC
T ss_conf 75446655-------33345766889774885788652442002------------------201125898888977279
Q ss_pred CCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCEECCCCCC
Q ss_conf 78896331124654576589224678898773333433345231378611475654456753235130458640112699
Q 001710 432 ELNGTIPTTVGRFQQLQGLSLYDNDLQGSIPYYLCHLERLSQLLLNGNNLSGAIPACLGSLTSLRELHLGSNTLTYSIPS 511 (1022)
Q Consensus 432 ~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 511 (1022)
.+..+.+..+..+++|+.|++++|.++.+.+..+.... ..+.++++|+.|++++|+++ .+|.
T Consensus 444 ~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~-----------------~~~~~l~~L~~L~Ls~N~l~-~lp~ 505 (636)
T 4eco_A 444 QISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDEN-----------------ENFKNTYLLTSIDLRFNKLT-KLSD 505 (636)
T ss_dssp CCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETT-----------------EECTTGGGCCEEECCSSCCC-BCCG
T ss_pred CCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCC-----------------CCCCCCCCCCEEECCCCCCC-CCCH
T ss_conf 66867878871589889898979978873978840440-----------------01221477338989699388-1685
Q ss_pred CCC--CCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEC------CCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCC
Q ss_conf 520--1221355853588688886100112333352503------57502586420011666555101357121357782
Q 001710 512 SLW--SLEYILYVNLSSNSLSGPLPSSIQHLKVLINLDL------SRNQLSGDIPITISGLKDLATLSLAGNQFNGPIPE 583 (1022)
Q Consensus 512 ~~~--~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L------~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 583 (1022)
.+. .+++|+.|++++|.+++ +|..+..+++|+.|+| ++|++.+.+|..|..+++|+.|+|++|.|+ .+|.
T Consensus 506 ~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~ip~ 583 (636)
T 4eco_A 506 DFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR-KVNE 583 (636)
T ss_dssp GGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCC-BCCS
T ss_pred HHHHCCCCCCCEEECCCCCCCC-CCHHHHCCCCCCEEECCCCCCCCCCCCCCCCHHHHHCCCCCCEEECCCCCCC-CCCH
T ss_conf 4534458876989898998877-6823530888787889888665667312127377856998788989899477-0597
Q ss_pred CCCCCCCCCEEECCCCEECCCC
Q ss_conf 2212133442321150403556
Q 001710 584 SFGSLISLESLDVSSNNISGKI 605 (1022)
Q Consensus 584 ~~~~l~~L~~L~L~~N~l~~~~ 605 (1022)
.+. ++|+.|++++|++....
T Consensus 584 ~~~--~~L~~L~Ls~N~l~~~~ 603 (636)
T 4eco_A 584 KIT--PNISVLDIKDNPNISID 603 (636)
T ss_dssp CCC--TTCCEEECCSCTTCEEE
T ss_pred HHH--CCCCEEECCCCCCCCCC
T ss_conf 683--86789987699876336
No 8
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=1.00 E-value=1 Score=470.33 Aligned_cols=530 Identities=19% Similarity=0.168 Sum_probs=390.6
Q ss_pred EEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCC
Q ss_conf 99739997656348888788874388555885468888874312445501233332479888555545665435434466
Q 001710 56 ALNLSSFSLGGIIPPHLGNLSFLVSLDISENNFYGHLPNELGKLRRLRLINFAYNELSGSFPSWIGILSRLQILSFHNNS 135 (1022)
Q Consensus 56 ~l~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~ 135 (1022)
.++.++++++ .+|..+. +.+++|+|++|.+++..+..|.++++|++|++++|.+.+..|..|..+++|++|+|++|.
T Consensus 15 ~~~c~~~~l~-~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~ 91 (606)
T 3vq2_A 15 TYQCMDQKLS-KVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP 91 (606)
T ss_dssp EEECTTSCCS-SCCTTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred CEECCCCCCC-CCCCCCC--CCCCEEECCCCCCCEECHHHCCCCCCCCEEECCCCCCCCCCHHHHHCHHHCCEEECCCCC
T ss_conf 0574688845-1898888--876788788897577375455577667488688773664397773060106886787985
Q ss_pred CCCCCCHHHCCCCCCCEEECCCCCCCCCCCCCC-CCCCCCCEECCCCCCCC-CCCCCCCCCCCCCEEECCCCCCCCCCCC
Q ss_conf 688840110174564523125753466667764-45534410021243555-5894554888777054433626678971
Q 001710 136 FTDRIPDFLLNLSKLEFLDLMENSLSGSLPNDI-RLPKLEKLYLGSNDFFG-QIPSSLSECTHLQTLWLADNKFSGRLPE 213 (1022)
Q Consensus 136 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~ 213 (1022)
+++..|..|..+++|++|++++|.+.+..+..+ .+++|++|++++|.+.+ .+|..+..+++|++|++++|++++..+.
T Consensus 92 l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~ 171 (606)
T 3vq2_A 92 IQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVN 171 (606)
T ss_dssp CCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTT
T ss_pred CCCCCHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCEECHHHHHHCCCCCEEECCCCCCEECCHH
T ss_conf 63048522078653788870377555445113489887798968788523253068673267777887668853105733
Q ss_pred CCCCCCCCC----EEEECCCCCCCCCHHHHCCCCCCCEEECCCCCCC-CCCCCCCCCCCCCCEEECCCCEEEEE-----C
Q ss_conf 102777664----8973133356877133208699889992486355-76896542556552440235433322-----2
Q 001710 214 NIGNLSQLT----DLNLAQNNLQGDMPTAIGNLQMLEHLNLGMNNLS-GPVPPTIFNISTIRLINLIENQLSGH-----L 283 (1022)
Q Consensus 214 ~~~~l~~L~----~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~-----~ 283 (1022)
.+..+.+|+ +|++++|.+++..+..+... +|+.|++++|.++ ...+..+.++++++.+++..+.+.+. +
T Consensus 172 ~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~ 250 (606)
T 3vq2_A 172 DLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIF 250 (606)
T ss_dssp TTHHHHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCC
T ss_pred HHHHHHCCCCCCCEEECCCCCCCEECCCCCCCC-EEEEEECCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 412120342002430046897532571105676-0433524678561667788860266565231411110367741026
Q ss_pred CCCCCCCC--CCCCEEEC-CCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 63125899--99528983-2841476688321123446422279995686699532221202300243454567899998
Q 001710 284 PLTLGHSL--PNLEFLTL-FGNNLIGTIPNSITNASKLIGLDLSSNLFSGHIPHTFGNLRFLRFLNLMFNSLTTESSPAD 360 (1022)
Q Consensus 284 ~~~~~~~l--~~L~~L~L-~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~i~~~~~~~~ 360 (1022)
....+..+ ..++.+.+ ..|.+.+..+. +..+++|+.|++++|.+.. .+ .+..+++|+.|++++|.+..++
T Consensus 251 ~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~-l~-~l~~~~~L~~L~l~~n~l~~lp---- 323 (606)
T 3vq2_A 251 EPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIKY-LE-DVPKHFKWQSLSIIRCQLKQFP---- 323 (606)
T ss_dssp CGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCCC-CC-CCCTTCCCSEEEEESCCCSSCC----
T ss_pred CHHHHHHHHHCCHHHEECCCCCCCCCCCCC-CCCCCCCCEEEECCCCCHH-HH-HCCCCCCCCEEECCCCCCCCCC----
T ss_conf 817766665434745012366555543222-3548878987714766044-35-4334011778976466676546----
Q ss_pred CCCHHCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCC--C
Q ss_conf 42110013466776567634588865358521332100011002343134467711027775109990078788963--3
Q 001710 361 QWSFLSSLTNCRSLTELALNVNPLRGILPPFIGNFSASLRKFEAIKCELKGSIPQEIGNLSGLMFLKLDDNELNGTI--P 438 (1022)
Q Consensus 361 ~~~~~~~l~~~~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~p~~l~~l~~L~~L~l~~N~l~~~~--~ 438 (1022)
.+ .+++|+.|++++|...+ .. .+..+++|++|++++|.+.+.. +
T Consensus 324 ------~~-~l~~L~~L~l~~n~~~~-------------------------~~--~~~~l~~L~~L~ls~n~l~~~~~~~ 369 (606)
T 3vq2_A 324 ------TL-DLPFLKSLTLTMNKGSI-------------------------SF--KKVALPSLSYLDLSRNALSFSGCCS 369 (606)
T ss_dssp ------CC-CCSSCCEEEEESCSSCE-------------------------EC--CCCCCTTCCEEECCSSCEEEEEECC
T ss_pred ------CC-CCCCCCEEECCCCCCCC-------------------------CH--HHCCCCCCCEEECCCCCCCCCCCHH
T ss_conf ------67-88755644544786853-------------------------10--0024898887977587368775201
Q ss_pred CCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCC-CCCCCCCCCCEEECCCCEECCCCCCCCCCCC
Q ss_conf 112465457658922467889877333343334523137861147565-4456753235130458640112699520122
Q 001710 439 TTVGRFQQLQGLSLYDNDLQGSIPYYLCHLERLSQLLLNGNNLSGAIP-ACLGSLTSLRELHLGSNTLTYSIPSSLWSLE 517 (1022)
Q Consensus 439 ~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 517 (1022)
..+..+++|+.|++++|.+.+ .+..+..+++|+.|++++|.+.+..+ ..|..+++|+.|++++|.+.+..+..+..++
T Consensus 370 ~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 448 (606)
T 3vq2_A 370 YSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLT 448 (606)
T ss_dssp HHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCT
T ss_pred HHHCCCCCCCEEECCCCCCCC-CHHHCCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCHHHHCCCC
T ss_conf 221467755486788995300-0554068888896589887058753764564621378898968978743355534778
Q ss_pred CCCEEECCCCCCCC-CCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCEEEC
Q ss_conf 13558535886888-86100112333352503575025864200116665551013571213577822212133442321
Q 001710 518 YILYVNLSSNSLSG-PLPSSIQHLKVLINLDLSRNQLSGDIPITISGLKDLATLSLAGNQFNGPIPESFGSLISLESLDV 596 (1022)
Q Consensus 518 ~L~~L~l~~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 596 (1022)
+|+.|++++|.+++ ..|..|..+++|+.|++++|++++..|..|.++++|+.|++++|++++..|..|..+++|+.|++
T Consensus 449 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l 528 (606)
T 3vq2_A 449 SLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDC 528 (606)
T ss_dssp TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEEC
T ss_pred CCCEEECCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHCCCCCCCCEEEC
T ss_conf 78989898983798546776045788998989888577648656154646898989899578748777068876898889
Q ss_pred CCCEECCCCCCHHHHCC-CCCEEECCCCCCEEECCCC
Q ss_conf 15040355682022113-5537984378150106999
Q 001710 597 SSNNISGKIPKSLEALL-YLKKLNVSYNRLEGEIPIK 632 (1022)
Q Consensus 597 ~~N~l~~~~~~~~~~l~-~L~~l~l~~N~l~~~~~~~ 632 (1022)
++|+++ .+|..+..++ +|+.+++++|++.|.++..
T Consensus 529 ~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~~ 564 (606)
T 3vq2_A 529 SFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEHQ 564 (606)
T ss_dssp TTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTTH
T ss_pred CCCCCC-CCCHHHHHHCCCCCEEECCCCCCCCCCCCH
T ss_conf 898376-668767521021748876289866477648
No 9
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=1.00 E-value=1 Score=467.43 Aligned_cols=525 Identities=18% Similarity=0.201 Sum_probs=298.4
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCC-----CCC--CCC------------EEEEECCCCCCEEEEECCCCCCC
Q ss_conf 47975589999999962358987434899999-----998--550------------11288289992999973999765
Q 001710 5 INNLTTDQSALLAFKADVIDSRSVLANNWSIS-----YPI--CNW------------VGISCGARHHRVVALNLSSFSLG 65 (1022)
Q Consensus 5 ~~~~~~d~~~ll~~k~~~~~~~~~~~~~w~~~-----~~~--c~w------------~gv~c~~~~~~v~~l~l~~~~~~ 65 (1022)
+.+..+|+.||++||+++.++ +|..+ .+| |+| .||.|+. .+||+.|+|+++++.
T Consensus 264 ~~~~~~d~~ALl~~k~~l~~~------~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~~~L~ 336 (876)
T 4ecn_A 264 TAEYIKDYKALKAIWEALDGK------NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAGFGAK 336 (876)
T ss_dssp CCHHHHHHHHHHHHHHHTTGG------GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTTTCCE
T ss_pred CCCCHHHHHHHHHHHHHCCCC------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECC-CCCEEEEECCCCCCC
T ss_conf 546317899999999973799------9886898653367764034666545335768428369-997989987247899
Q ss_pred CCCCCCCCCCCCCCEEEC-CCCCCCCCCCCCCCCC----CCC--CCCCCCCC-CCC--------------------CCCC
Q ss_conf 634888878887438855-5885468888874312----445--50123333-247--------------------9888
Q 001710 66 GIIPPHLGNLSFLVSLDI-SENNFYGHLPNELGKL----RRL--RLINFAYN-ELS--------------------GSFP 117 (1022)
Q Consensus 66 ~~~~~~l~~l~~L~~L~L-s~n~~~~~~p~~~~~l----~~L--~~L~Ls~n-~l~--------------------~~~p 117 (1022)
|.+|+++++|++|++|+| ++|.+.|..|-..... ..+ +.+...+. .+. ...+
T Consensus 337 G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~ 416 (876)
T 4ecn_A 337 GRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKP 416 (876)
T ss_dssp EEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCC
T ss_pred CCCCHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCC
T ss_conf 94855774155562843012563356664222344544115678887776666542037511156787877650733243
Q ss_pred CCCCCCCCCCEEECCC--CCCCCCCCHHHCCCCCCCEEECCCCCCCCC-CCCCCCCCCCCCEECCCCCCCCCCCCCCC--
Q ss_conf 5555456654354344--666888401101745645231257534666-67764455344100212435555894554--
Q 001710 118 SWIGILSRLQILSFHN--NSFTDRIPDFLLNLSKLEFLDLMENSLSGS-LPNDIRLPKLEKLYLGSNDFFGQIPSSLS-- 192 (1022)
Q Consensus 118 ~~~~~l~~L~~L~Ls~--n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~l~-- 192 (1022)
........++.+.+.. |.+++ +|..++.+++|+.|+|++|.+.+. ++..+ +..+.|.+.+.+|..++
T Consensus 417 i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~-------~~~s~n~~~g~iP~~l~f~ 488 (876)
T 4ecn_A 417 IKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDW-------EDANSDYAKQYENEELSWS 488 (876)
T ss_dssp CCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSC-------SCTTSHHHHHHTTSCCCGG
T ss_pred CCCCCCCCHHHCEECCCCCCCCC-HHHHHHCCCCCCEEECCCCCCCCCCCCCCC-------CCCCCCCCCCCCCHHHHHC
T ss_conf 22235442312040566676152-118875699987897968867887465322-------3322222244587444025
Q ss_pred CCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEECCCC-CCC-CCHHHHCCCC-------CCCEEECCCCCCCCCCCC--
Q ss_conf 88877705443362667897110277766489731333-568-7713320869-------988999248635576896--
Q 001710 193 ECTHLQTLWLADNKFSGRLPENIGNLSQLTDLNLAQNN-LQG-DMPTAIGNLQ-------MLEHLNLGMNNLSGPVPP-- 261 (1022)
Q Consensus 193 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~-~~~~~~~~l~-------~L~~L~Ls~N~l~~~~~~-- 261 (1022)
.+++|++|+|++|++.+.+|..+..+++|+.|++++|+ +++ .+|..+..++ +|++|++++|.++ .+|.
T Consensus 489 ~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~ 567 (876)
T 4ecn_A 489 NLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASA 567 (876)
T ss_dssp GCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHH
T ss_pred CCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCHHHHHHHHHCCCCCCCCCEEEEECCCCC-CCCCHH
T ss_conf 5999778987189887527387737999899989689876566461778752330155688319982289477-618723
Q ss_pred CCCCCCCCCEEECCCCEEEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 54255655244023543332226312589999528983284147668832112344642227999568669953222120
Q 001710 262 TIFNISTIRLINLIENQLSGHLPLTLGHSLPNLEFLTLFGNNLIGTIPNSITNASKLIGLDLSSNLFSGHIPHTFGNLRF 341 (1022)
Q Consensus 262 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 341 (1022)
.+.++ ++|+.|++++|++. .+| .+..+++|+.|+|++|.+. .+|..+..+++
T Consensus 568 ~l~~L-------------------------~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~ 619 (876)
T 4ecn_A 568 SLQKM-------------------------VKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTD 619 (876)
T ss_dssp HHTTC-------------------------TTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECT
T ss_pred HHHCC-------------------------CCCCEEECCCCCCC-CCH-HHCCCCCCEEEECCCCCCC-CCHHHHHHCCC
T ss_conf 55158-------------------------98898989799825-621-2247985007987187125-03587752511
Q ss_pred -CCCCCCCCCCCCCCCCCCCCCCHHCCCCC--CCCCCEEECCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCC-
Q ss_conf -23002434545678999984211001346--67765676345888653585213321000110023431344677110-
Q 001710 342 -LRFLNLMFNSLTTESSPADQWSFLSSLTN--CRSLTELALNVNPLRGILPPFIGNFSASLRKFEAIKCELKGSIPQEI- 417 (1022)
Q Consensus 342 -L~~L~l~~N~i~~~~~~~~~~~~~~~l~~--~~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~p~~l- 417 (1022)
|+.|++++|.++.++.. +.. ..+|+.|++++|.+.+..+.. +..+
T Consensus 620 ~L~~L~Ls~N~L~~lp~~---------~~~~~~~~L~~L~Ls~N~l~g~ip~l----------------------~~~l~ 668 (876)
T 4ecn_A 620 QVEGLGFSHNKLKYIPNI---------FNAKSVYVMGSVDFSYNKIGSEGRNI----------------------SCSMD 668 (876)
T ss_dssp TCCEEECCSSCCCSCCSC---------CCTTCSSCEEEEECCSSCTTTTSSSC----------------------SSCTT
T ss_pred CCCEEECCCCCCCCCCHH---------HHCCCCCCCCEEECCCCCCCCCCCCC----------------------HHHHC
T ss_conf 498999849978747644---------52255677788977088478864320----------------------00000
Q ss_pred -CCCCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCC-------CCCCCEEECCCCCCCCCCCCCC
Q ss_conf -27775109990078788963311246545765892246788987733334-------3334523137861147565445
Q 001710 418 -GNLSGLMFLKLDDNELNGTIPTTVGRFQQLQGLSLYDNDLQGSIPYYLCH-------LERLSQLLLNGNNLSGAIPACL 489 (1022)
Q Consensus 418 -~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~-------l~~L~~L~l~~n~l~~~~~~~~ 489 (1022)
..+++|+.|++++|.+..+....+..+++|+.|+|++|.+..+.+..+.. +++|+.|++++|.++ .+|..+
T Consensus 669 ~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l 747 (876)
T 4ecn_A 669 DYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDF 747 (876)
T ss_dssp TCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGG
T ss_pred CCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCCCCCCCCEEECCCCCCC-CCHHHH
T ss_conf 1357976889831996886597887138988999898996885496784555334321487158988899786-652776
Q ss_pred C--CCCCCCEEECCCCEECCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 6--75323513045864011269952012213558535886888861001123333525035750258642001166655
Q 001710 490 G--SLTSLRELHLGSNTLTYSIPSSLWSLEYILYVNLSSNSLSGPLPSSIQHLKVLINLDLSRNQLSGDIPITISGLKDL 567 (1022)
Q Consensus 490 ~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 567 (1022)
. .+++|+.|+|++|++++ +|..+..+++|+.|++++|+ ++++|++.+.+|..|..+++|
T Consensus 748 ~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~------------------~ls~N~l~~~ip~~l~~L~~L 808 (876)
T 4ecn_A 748 RATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQR------------------DAEGNRILRQWPTGITTCPSL 808 (876)
T ss_dssp STTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCB------------------CTTCCBCCCCCCTTGGGCSSC
T ss_pred HHCCCCCCCEEEECCCCCCC-CCHHHHCCCCCCEEECCCCC------------------CCCCCCCCCCCHHHHHCCCCC
T ss_conf 24427986989908997876-10566159998899887997------------------766563244486888369987
Q ss_pred CEECCCCCCCCCCCCCCCCCCCCCCEEECCCCEECCCCCCHHHHCCCCCEEECCCCCCEE
Q ss_conf 510135712135778222121334423211504035568202211355379843781501
Q 001710 568 ATLSLAGNQFNGPIPESFGSLISLESLDVSSNNISGKIPKSLEALLYLKKLNVSYNRLEG 627 (1022)
Q Consensus 568 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~l~~N~l~~ 627 (1022)
+.|+|++|+|. .+|..+. ++|+.|+|++|++....+..+.....+..+.+.+|++..
T Consensus 809 ~~L~Ls~N~L~-~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~~~ 865 (876)
T 4ecn_A 809 IQLQIGSNDIR-KVDEKLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQD 865 (876)
T ss_dssp CEEECCSSCCC-BCCSCCC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTTSE
T ss_pred CEEECCCCCCC-CCCHHHC--CCCCEEECCCCCCCCCCHHHCCCCCCCHHEEECCCCCCC
T ss_conf 88988799787-4087662--877889997998881176772565423110346888655
No 10
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=465.29 Aligned_cols=516 Identities=22% Similarity=0.247 Sum_probs=428.7
Q ss_pred CCCEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 55011288289992999973999765634888878887438855588546888-88743124455012333324798885
Q 001710 40 CNWVGISCGARHHRVVALNLSSFSLGGIIPPHLGNLSFLVSLDISENNFYGHL-PNELGKLRRLRLINFAYNELSGSFPS 118 (1022)
Q Consensus 40 c~w~gv~c~~~~~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~-p~~~~~l~~L~~L~Ls~n~l~~~~p~ 118 (1022)
|+|.+|.+ -...++.|+|+++.+.+..+..|.++++|++|+|++|...+.+ |..|.++++|++|+|++|.+.+..|.
T Consensus 14 ~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~ 91 (844)
T 3j0a_A 14 CNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPD 91 (844)
T ss_dssp CCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTT
T ss_pred CCCCCCCC--CCCCCCEEECCCCCCCCCCHHHCCCCCCCEEEECCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHH
T ss_conf 99777898--9998688888778678329667766213708867899774441977853787788887989958531976
Q ss_pred CCCCCCCCCEEECCCCCCCCCCCHH--HCCCCCCCEEECCCCCCCCCCCC-CC-CCCCCCCEECCCCCCCCCCCCCCCCC
Q ss_conf 5554566543543446668884011--01745645231257534666677-64-45534410021243555589455488
Q 001710 119 WIGILSRLQILSFHNNSFTDRIPDF--LLNLSKLEFLDLMENSLSGSLPN-DI-RLPKLEKLYLGSNDFFGQIPSSLSEC 194 (1022)
Q Consensus 119 ~~~~l~~L~~L~Ls~n~l~~~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~-~~-~l~~L~~L~l~~n~l~~~~~~~l~~l 194 (1022)
.|..+++|++|+|++|.+++..+.. +..+++|+.|+|++|.+.+..+. .+ .+++|++|++++|.+.+..+..+..+
T Consensus 92 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l 171 (844)
T 3j0a_A 92 AFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPL 171 (844)
T ss_dssp SSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHH
T ss_pred HCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHHHCCCCCEEECCCCCCCEECHHHCCCC
T ss_conf 71578665870176788973404676455667999888987864232566557638898989898984776678875355
Q ss_pred --CCCCEEECCCCCCCCCCCCCCCCCCC------CCEEEECCCCCCCCCHHHHCCC---CCCCEEECCCC---------C
Q ss_conf --87770544336266789711027776------6489731333568771332086---99889992486---------3
Q 001710 195 --THLQTLWLADNKFSGRLPENIGNLSQ------LTDLNLAQNNLQGDMPTAIGNL---QMLEHLNLGMN---------N 254 (1022)
Q Consensus 195 --~~L~~L~L~~n~l~~~~~~~~~~l~~------L~~L~L~~n~l~~~~~~~~~~l---~~L~~L~Ls~N---------~ 254 (1022)
++|+.|+++.|.+.+..+..+..+.+ |+.|++++|.+++..+..+... ..+..+.++.+ .
T Consensus 172 ~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~ 251 (844)
T 3j0a_A 172 QGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHN 251 (844)
T ss_dssp HHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSS
T ss_pred CCCCCCEEECCCCCCCCCCCCCHHHCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCCC
T ss_conf 67750357897886665545533223772235740079657886865677888764274410011212122346644456
Q ss_pred CCCCCCCCCCCC--CCCCEEECCCCEEEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCC
Q ss_conf 557689654255--655244023543332226312589999528983284147668832112344642227999568669
Q 001710 255 LSGPVPPTIFNI--STIRLINLIENQLSGHLPLTLGHSLPNLEFLTLFGNNLIGTIPNSITNASKLIGLDLSSNLFSGHI 332 (1022)
Q Consensus 255 l~~~~~~~~~~l--~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 332 (1022)
+.......+.++ ++|+.|++++|.+.+..+.. +..+++|+.|++++|++.+..+..+..+++|+.|+|++|.+.+..
T Consensus 252 l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 330 (844)
T 3j0a_A 252 IKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRV-FETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELY 330 (844)
T ss_dssp STTGGGTTTTTTTTSCCCEEECTTCCCCEECSCC-SSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCC
T ss_pred CCCCCHHHHHCCCCCCCCEEECCCCCCCCCCHHH-HHCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCC
T ss_conf 6889855652555478618989799455158634-525899999989798189879688368889998989899788518
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCC
Q ss_conf 95322212023002434545678999984211001346677656763458886535852133210001100234313446
Q 001710 333 PHTFGNLRFLRFLNLMFNSLTTESSPADQWSFLSSLTNCRSLTELALNVNPLRGILPPFIGNFSASLRKFEAIKCELKGS 412 (1022)
Q Consensus 333 ~~~~~~l~~L~~L~l~~N~i~~~~~~~~~~~~~~~l~~~~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~ 412 (1022)
+..|..+++|+.|++++|.++.++.. .+..+++|+.|++++|.+++.
T Consensus 331 ~~~~~~l~~L~~L~L~~N~i~~~~~~--------~~~~l~~L~~L~Ls~N~l~~i------------------------- 377 (844)
T 3j0a_A 331 SSNFYGLPKVAYIDLQKNHIAIIQDQ--------TFKFLEKLQTLDLRDNALTTI------------------------- 377 (844)
T ss_dssp SCSCSSCTTCCEEECCSCCCCCCCSS--------CSCSCCCCCEEEEETCCSCCC-------------------------
T ss_pred HHHHCCCCCCCEEECCCCCCCCCCHH--------HHCCCCCCCEEECCCCCCCCC-------------------------
T ss_conf 78846899999898989987762866--------613788899988989977861-------------------------
Q ss_pred CCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCC-CCCCCCCCCCEEECCCCCCCCCCCC-CCC
Q ss_conf 77110277751099900787889633112465457658922467889877-3333433345231378611475654-456
Q 001710 413 IPQEIGNLSGLMFLKLDDNELNGTIPTTVGRFQQLQGLSLYDNDLQGSIP-YYLCHLERLSQLLLNGNNLSGAIPA-CLG 490 (1022)
Q Consensus 413 ~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~-~~~ 490 (1022)
..+++|+.|++++|++. .+|.. ...++.|+++.|.+.+... ..+..+++|+.|++++|.+++..+. .+.
T Consensus 378 -----~~~~~L~~L~l~~N~l~-~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 448 (844)
T 3j0a_A 378 -----HFIPSIPDIFLSGNKLV-TLPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPS 448 (844)
T ss_dssp -----SSCCSCSEEEEESCCCC-CCCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSC
T ss_pred -----CCCCCCCHHCCCCCCCC-CCCCC---CCCCCEEECCCCCCCCCCHHHHHHCCCCCCEEECCCCCCCCCCCCCCCC
T ss_conf -----68898232005899723-14554---5543122145675345755666512776666667787125555433356
Q ss_pred CCCCCCEEECCCCEEC-----CCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCC
Q ss_conf 7532351304586401-----12699520122135585358868888610011233335250357502586420011666
Q 001710 491 SLTSLRELHLGSNTLT-----YSIPSSLWSLEYILYVNLSSNSLSGPLPSSIQHLKVLINLDLSRNQLSGDIPITISGLK 565 (1022)
Q Consensus 491 ~l~~L~~L~L~~N~l~-----~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 565 (1022)
.+++|+.|++++|.++ +..+..|..+++|+.|++++|.+++..|..|.++++|+.|+|++|++++..+..+. +
T Consensus 449 ~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~ 526 (844)
T 3j0a_A 449 ENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--A 526 (844)
T ss_dssp SCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--S
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHCCCHHHHHEEECCCCCCCCCCHHHHH--C
T ss_conf 68731002477773644101355355544755365777889856553955704501221569999978745710110--0
Q ss_pred CCCEECCCCCCCCCCCCCCCCCCCCCCEEECCCCEECCCC
Q ss_conf 5551013571213577822212133442321150403556
Q 001710 566 DLATLSLAGNQFNGPIPESFGSLISLESLDVSSNNISGKI 605 (1022)
Q Consensus 566 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 605 (1022)
+|+.|+|++|++++..|..|. +|+.|++++|.+.+.-
T Consensus 527 ~L~~L~Ls~N~l~~~~~~~~~---~L~~l~l~~Np~~C~c 563 (844)
T 3j0a_A 527 NLEILDISRNQLLAPNPDVFV---SLSVLDITHNKFICEC 563 (844)
T ss_dssp CCCEEEEEEECCCCCCSCCCS---SCCEEEEEEECCCCSS
T ss_pred CCCEEECCCCCCCCCCHHHHC---CCCEEEECCCCCCCCC
T ss_conf 455888988847888966837---7688993199702536
Done!