Query 001711
Match_columns 1021
No_of_seqs 247 out of 767
Neff 6.3
Searched_HMMs 29240
Date Tue Mar 26 16:12:28 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001711.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1009-1012//hhsearch_pdb/001711hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3efo_B SEC24 related gene fami 1.0 1 1 1435.9 70.9 709 299-1020 28-768 (770)
2 3eh2_A Protein transport prote 1.0 1 1 1427.2 74.2 710 298-1020 23-764 (766)
3 3eh1_A Protein transport prote 1.0 1 1 1397.5 74.4 710 301-1019 26-751 (751)
4 1m2v_B SEC24, protein transpor 1.0 1 1 1393.9 67.2 752 260-1019 110-926 (926)
5 1pcx_A Protein transport prote 1.0 1 1 1364.6 71.4 706 306-1019 51-810 (810)
6 1m2o_A SEC23, protein transpor 1.0 1 1 1144.5 59.9 657 310-1019 5-765 (768)
7 2nut_A Protein transport prote 1.0 1 1 1122.8 57.0 660 311-1019 15-766 (769)
8 2yrc_A Protein transport prote 1.0 1 1 92.4 2.0 39 354-393 13-53 (59)
9 4fx5_A VON willebrand factor t 1.0 1 1 92.1 36.8 343 426-831 76-453 (464)
10 2x31_A Magnesium-chelatase 60 1.0 1 1 73.7 -3.0 178 426-662 4-187 (189)
No 1
>3efo_B SEC24 related gene family, member D; copii, coat protein, transport signal, disease mutation, endoplasmic reticulum, ER-golgi transport, golgi apparatus, membrane; 2.70A {Homo sapiens} PDB: 3eg9_B
Probab=1.00 E-value=1 Score=1435.92 Aligned_cols=709 Identities=32% Similarity=0.616 Sum_probs=678.1
Q ss_pred CCCCCCCCCCCC----CCCCCCEECCCCCCCCCHHHHHHCCCCEEEEECCCCCCCCCCC---------------CCCCEE
Q ss_conf 999997876522----5899921000365589987775137764889813888999988---------------765537
Q 001711 299 VEPSSLAETYPL----NCHSRYLRLTTSAIPNSQSLVSRWHLPLGAVVCPLAEPPEGNL---------------FICRTY 359 (1021)
Q Consensus 299 ~~Pp~~~~~~~~----N~~P~yiR~T~~~iP~t~~l~~~~~lPlgivv~Pfa~~~~~e~---------------~rCrAY 359 (1021)
.+||++++.|++ ||+|+|||+|||+||.|++++++++||||++|+||++..++|. +|||||
T Consensus 28 ~~pp~~~~~~~~~d~gn~~p~~~R~T~n~iP~t~~l~~~~~lPlg~~i~Pl~~~~~~e~p~pvv~~~~~~pvRC~rCray 107 (770)
T 3efo_B 28 QIPPLVTTDCMIQDQGNASPRFIRCTTYCFPCTSDMAKQAQIPLAAVIKPFATIPSNESPLYLVNHGESGPVRCNRCKAY 107 (770)
T ss_dssp CCCCCTTSCCEEECSSSCCTTTEEESBSEEESSHHHHHHHCCCCEEEECTTCCCCTTSCCCCEECCTTTCSCBCTTTCCB
T ss_pred CCCCCCCCCEEEEECCCCCCCEEEEECCCCCCCHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 88989877536641577999858841134799999997379984999975887876568987425778898735887888
Q ss_pred ECCCEEEECCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCC--CCCCCCCEEEEEEECC
Q ss_conf 81660696089569975899978998432134586766579788886555427987266655--8999997699999651
Q 001711 360 VNPYVTFTDAGRKWRCNICALLNDVPGDYFAHLDATGRRIDIDQRPELTKGSVEFVAPTEYM--VRPPMPPLYFFLIDVS 437 (1021)
Q Consensus 360 iNPf~~f~~~G~~W~CnlC~~~N~vP~~Y~~~l~~~g~R~D~~~rPEL~~gsVEfvap~eY~--~r~p~pp~yvFvIDvS 437 (1021)
|||||+|+++|++|+||||+..|++|.+|+++++++|+|.|+++||||++|+|||++|+||| .|+|+||+|+||||||
T Consensus 108 iNPf~~f~~~g~~w~Cn~C~~~N~~P~~Y~~~l~~~g~r~d~~~rpEL~~~tvEf~ap~eY~~~~~~p~pp~y~FvIDvs 187 (770)
T 3efo_B 108 MCPFMQFIEGGRRYQCGFCNCVNDVPPFYFQHLDHIGRRLDHYEKPELSLGSYEYVATLDYCRKSKPPNPPAFIFMIDVS 187 (770)
T ss_dssp SCTTCEEEGGGTEEECTTTCCEEECCGGGCCCCCSSSCTTTGGGSHHHHCSEEEEECCGGGSGGGSCCCCCEEEEEEECS
T ss_pred CCCCEEEECCCCEEEECCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCEEEECCHHHHCCCCCCCCCEEEEEEECC
T ss_conf 17735981599779954665557882675234553466466446920056742331687874367899985899999861
Q ss_pred HHHHHHCHHHHHHHHHHHHHHCCCCC-----CCCEEEEEEECCEEEEEECCCCCCCCCEEECCCCCCCCCCCCCCCCEEH
Q ss_conf 66885237999999999997409999-----9843999997675999826999997614311453223578899652302
Q 001711 438 ISAIRSGMLEVVAQTIKSCLDELPGF-----PRTQIGFITFDSTIHFYNMKSSLTQPQMMVISDLDDIFVPLPDDLLVNL 512 (1021)
Q Consensus 438 ~~av~sG~l~~~~~sI~~~L~~Lp~~-----~rt~VgiITFds~Vhfy~l~~~~~~pqmlVvsDldd~f~P~p~~llv~l 512 (1021)
++++++|+++++|++|+++|+.||++ +|++|||||||++||||++++.++++||+|++|++|+|+|++++||+++
T Consensus 188 ~~av~sg~l~~~~~sl~~~L~~lP~~~~~~~~~~~VG~ITfd~~vh~y~l~~~~~q~q~~vv~d~~d~f~P~~~~~Lv~l 267 (770)
T 3efo_B 188 YSNIKNGLVKLICEELKTMLEKIPKEEQEETSAIRVGFITYNKVLHFFNVKSNLAQPQMMVVTDVGEVFVPLLDGFLVNY 267 (770)
T ss_dssp HHHHHTTHHHHHHHHHHHHGGGCCCCTTSSSCSCEEEEEEESSSEEEEECCTTCSSCEEEEECCTTSCCCCCSSSSSBCT
T ss_pred HHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCEEEEEECCCCCCCCEEEEECCCCCCCCCCCCCEEEEH
T ss_conf 43200128999999999999858853356676635999996888999967885567549984264324677755503549
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHH--CCCEEEEEECCCCC-CCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 66699999999528974358887665469999999999981--29889999427999-8853321368867546897566
Q 001711 513 SESRSVVDTLLDSLPSMFQDNMNVESAFGPALKAAFMVMSR--LGGKLLIFQNSLPS-LGVGCLKLRGDDLRVYGTDKEH 589 (1021)
Q Consensus 513 ~es~~~I~~lLd~Lp~~f~~~~~~~~alG~AL~aA~~lL~~--~GGkIivF~s~~Pt-~GpG~L~~r~~~~r~~gt~ke~ 589 (1021)
+||++.|+++|++|+.+|.+++..++|+|+||++|+.+|+. .||||++|++|+|+ .|+|+|+.|++ .+..+++||+
T Consensus 268 ~e~~~~i~~lL~~L~~~~~~~~~~~t~~g~al~aa~~~l~~~~~GGkI~~F~s~lP~t~GpG~l~~r~~-~~~~~t~ke~ 346 (770)
T 3efo_B 268 QESQSVIHNLLDQIPDMFADSNENETVFAPVIQAGMEALKAADCPGKLFIFHSSLPTAEAPGKLKNRDD-KKLVNTDKEK 346 (770)
T ss_dssp TTTHHHHHHHHHHHHHHHHTCCCCCCCCHHHHHHHHHHHHHHTCCEEEEEEECSCCCSSSTTCCCCCCC-CCCSSCSCGG
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCCC-CCCCCCCCHH
T ss_conf 999999999998627652578887534899999999984668888589999557897678865424444-4456772014
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 67888807899999998517918999972389768121442103454089991999875257799999998302444342
Q 001711 590 SLRIPEDPFYKQMAADLTKFQIAVNVYAFSDKYTDIASLGTLAKYTGGQVYYYPSFQSTTHGERLRHELSRDLTRETAWE 669 (1021)
Q Consensus 590 ~l~~p~~~fYk~lA~~~~~~~IsVDlF~~s~~~~Diatl~~L~~~TGG~i~~y~~F~~~~d~~~l~~dL~r~ltr~~g~~ 669 (1021)
++++++++||++||++|+++||+||+|+++.+|+|+++|+.|+++|||.+++|++|+.++|.++|.+||.|.+++++||+
T Consensus 347 ~~~~~a~~fY~~lA~~~~~~~i~VDlF~~s~~~vdlatl~~l~~~TGG~v~~y~~F~~~~~~~~f~~dl~~~l~~~~gf~ 426 (770)
T 3efo_B 347 ILFQPQTNVYDSLAKDCVAHGCSVTLFLFPSQYVDVASLGLVPQLTGGTLYKYNNFQMHLDRQQFLNDLRNDIEKKIGFD 426 (770)
T ss_dssp GGGSCSSSHHHHHHHHHHHTTEEEEEEECCSSCCCHHHHTHHHHHTTCCEEECTTCCHHHHHHHHHHHHHHHHHSCEEEE
T ss_pred HHHCCHHHHHHHHHHHHHHCCEEEEEEEECCCCCCHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCEEEE
T ss_conf 43053379999999999975947999970587668488887876069669985687606689999999998632244423
Q ss_pred EEEEEEECCCEEEEEEECCCCCCCCCCEEECCCCCCCCEEEEEEECCCCCCCCEEEEEEEEEEEECCCCEEEEEEEEEEC
Q ss_conf 48999948991797520685458989336136799980999997304547885058999999883498299999912000
Q 001711 670 AVMRIRCGKGVRFTNYHGNFMLRSTDLLALPAVDCDKAYAMQLSLEETLLTTQTVYFQVALLYTASCGERRIRVHTLAAP 749 (1021)
Q Consensus 670 a~lrVR~S~Gl~I~~~~Gnf~~rs~~~~~l~~id~d~Siav~l~~d~~l~~~~~~~iQ~AlLYT~~~GeRrIRV~Tl~lp 749 (1021)
|+||||||+||+|+++||||+++++++|+++++++|++|+|+|+|++++.+...+|||+|++||+.+|+|||||||++++
T Consensus 427 a~mrVR~S~gl~v~~~~G~~~~~~t~~~~l~~~~~d~s~~v~f~~~~~l~~~~~~~~Q~allYt~~~G~RRiRV~T~~l~ 506 (770)
T 3efo_B 427 AIMRVRTSTGFRATDFFGGILMNNTTDVEMAAIDCDKAVTVEFKHDDKLSEDSGALIQCAVLYTTISGQRRLRIHNLGLN 506 (770)
T ss_dssp EEEEEEECTTEEEEEEESSCBCSSSSCEEEEEEESSCCEEEEEEESSCCBTTTBEEEEEEEEEECTTCCEEEEEEEEEEE
T ss_pred EEEEEEECCCEEEEEEECCEECCCCCCEEECCCCCCCEEEEEEEECCCCCCCCCEEEEEEEEEECCCCCEEEEEEEECHH
T ss_conf 79999965984899867770578887448405686746999999447777888579999998781899989999986340
Q ss_pred CCCCHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 46898899983298589999999999998139999999999999999999997654211589973014511350899999
Q 001711 750 VVSNLSDMYQQADTGAIVSVFSRLAIEKTLSHKLEDARNAVQLRLVKALKEYRNLYAVQHRLGSRMIYPESLKFLPLYCL 829 (1021)
Q Consensus 750 vts~l~~vf~s~D~~ai~~~laK~a~~~~l~~~l~d~R~~l~~~lv~iL~~YRk~~~a~~~~~~qLiLPesLklLPlyi~ 829 (1021)
|++++.++|+++|++|++++|+|+|++++++++++++|+.|+++|+++|++||| +|+..++++||+|||+||+||+|++
T Consensus 507 vt~~~~~v~~~~Dqea~~~llar~av~~~~~~~l~~~r~~L~~~~~~~l~~Yrk-~~~~~~s~~ql~Lp~~lkllP~~~~ 585 (770)
T 3efo_B 507 CSSQLADLYKSCETDALINFFAKSAFKAVLHQPLKVIREILVNQTAHMLACYRK-NCASPSAASQLILPDSMKVLPVYMN 585 (770)
T ss_dssp EESCHHHHHHTBCHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHHHH-HTSCCCCTTEEEECGGGTTHHHHHH
T ss_pred HCCCHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH-HCCCCCCCCCEECCHHHHHHHHHHH
T ss_conf 126689999730999999999999999862277999999999999999999997-5337788654206788999999999
Q ss_pred HHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCEE
Q ss_conf 96200388899999990299999999918998877862503189931487888756776334453102311002688379
Q 001711 830 AICKSTPIRGGYADVTLDERCAAGYTMMALPVKKLLKLLYPCLIRVDEHLLKPSAQLDEYKNIMKRLPLVAESLDSRGLY 909 (1021)
Q Consensus 830 ~LlKS~~Lr~g~~~~s~D~R~~~~~~l~s~~~~~~l~~lYPrLy~lh~l~~~~~~~~~~~~~lP~~l~LS~~~l~~~giy 909 (1021)
+|+||.+|+.+ .++++|||+|++++++++++..++.|+||+||++|++. .+...+|++++||.++|+++|||
T Consensus 586 ~L~Ks~~l~~~-~~~s~Der~~~~~~l~~~~~~~~l~~iyP~L~~~h~l~-------~~~~~~P~~v~ls~~~l~~~giy 657 (770)
T 3efo_B 586 CLLKNCVLLSR-PEISTDERAYQRQLVMTMGVADSQLFFYPQLLPIHTLD-------VKSTMLPAAVRCSESRLSEEGIF 657 (770)
T ss_dssp HHHHSGGGSCS-SSSCHHHHHHHHHHHHHCCHHHHHHHHSCEEEECTTCC-------SSSCSCCCCCCSSGGGCCTTCEE
T ss_pred HHHCCHHHCCC-CCCCCCHHHHHHHHHHCCCHHHHHHHHCCCEEEEECCC-------CCCCCCCCCCCCCHHHCCCCCEE
T ss_conf 99675742688-99982399999999977999999986102469974056-------55566787727729971889579
Q ss_pred EEECCCEEEEEECCCCCHHHHHHHCCCCHHHHH--CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCH
Q ss_conf 997794669983489999999751299335431--010134554187999999999999709997741899406998325
Q 001711 910 IFDDGFRFVLWFGRMLSPDIAMNLLGSEFAAEL--SKVMLREQDNEMSRKLLGILKKLREQDPSYYQLCQLVRQGEQPRE 987 (1021)
Q Consensus 910 LLD~G~~i~lwvG~~v~~~ll~~lFGv~~~~~l--~~~~Lp~~~n~~s~~l~~iI~~lr~~r~~~~~l~~vvrqg~~~~~ 987 (1021)
|||+|+.+|||+|+.+++++++||||+++++++ ++..||+++|++|+++|++|++||++|..|+++ +|||||++.
T Consensus 658 LLD~g~~i~lw~G~~v~~~l~~~lfgv~~~~~i~~~~~~lp~~~~~~s~~vr~ii~~lr~~r~~~~~l-~ivr~~~~~-- 734 (770)
T 3efo_B 658 LLANGLHMFLWLGVSSPPELIQGIFNVPSFAHINTDMTLLPEVGNPYSQQLRMIMGIIQQKRPYSMKL-TIVKQREQP-- 734 (770)
T ss_dssp EEECSSEEEEEECTTCCHHHHHHHHSSSSGGGCCTTCCSCCCCCSSHHHHHHHHHHHHHTTCSSCCEE-EEEESTTST--
T ss_pred EEECCCEEEEEECCCCCHHHHHHHCCCCCHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCE-EEEECCCCH--
T ss_conf 99878579999668789899998649983443584445688889879999999999999738887517-999479974--
Q ss_pred HHHHHHHCCCCCC-CCCCCHHHHHHHHHHHHHCC
Q ss_conf 9999860045699-99998999999999998119
Q 001711 988 GFLLLANLVEDQI-GGSNGYADWIMQIHRQVLQN 1020 (1021)
Q Consensus 988 e~~f~~~LVED~~-~~~~SY~dFL~~lh~~I~~k 1020 (1021)
|.+|.++|||||+ ++++||+||||+|||+|+++
T Consensus 735 e~~f~~~LvED~~~~~~~SY~dfL~~lh~~i~~~ 768 (770)
T 3efo_B 735 EMVFRQFLVEDKGLYGGSSYVDFLCCVHKEICQL 768 (770)
T ss_dssp THHHHTTCTTSCC---CCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 9999984722499999989999999999999986
No 2
>3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle transport, cytoplasm, endoplasmic reticulum, ER-golgi transport, golgi apparatus; 2.35A {Homo sapiens}
Probab=1.00 E-value=1 Score=1427.23 Aligned_cols=710 Identities=33% Similarity=0.632 Sum_probs=678.8
Q ss_pred CCCCCCCCCCCCC----CCCCCCEECCCCCCCCCHHHHHHCCCCEEEEECCCCCCCCCCC---------------CCCCE
Q ss_conf 9999997876522----5899921000365589987775137764889813888999988---------------76553
Q 001711 298 DVEPSSLAETYPL----NCHSRYLRLTTSAIPNSQSLVSRWHLPLGAVVCPLAEPPEGNL---------------FICRT 358 (1021)
Q Consensus 298 ~~~Pp~~~~~~~~----N~~P~yiR~T~~~iP~t~~l~~~~~lPlgivv~Pfa~~~~~e~---------------~rCrA 358 (1021)
..+||+++++|++ ||+|+|||+|||+||.|++++++++||||++|+||++..+.|. +||||
T Consensus 23 ~~~pP~~~t~~~~~d~gn~~p~~~R~T~~~iP~t~~l~~~~~lPlg~~i~P~~~~~~~e~~~pvv~~~~~~pvRC~rCra 102 (766)
T 3eh2_A 23 GQVPPLVTTNFLVKDQGNASPRYIRCTSYNIPCTSDMAKQAQVPLAAVIKPLARLPPEEASPYVVDHGESGPLRCNRCKA 102 (766)
T ss_dssp TCCCCCTTSCCEEECSSSCCTTTEEESBSEEESSHHHHHHHTCCEEEEECTTCCCCTTSCCCEEECCGGGCCCBCTTTCC
T ss_pred CCCCCCCCCCEEEECCCCCCCCEEECCCCCCCCCHHHHHHCCCCEEEEEECCCCCCCCCCCCCEECCCCCCCCCCCCCCC
T ss_conf 88899877754760268899863776044479999999727898389983698686557899760478888871689888
Q ss_pred EECCCEEEECCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCC--CCCCCCEEEEEEEC
Q ss_conf 7816606960895699758999789984321345867665797888865554279872666558--99999769999965
Q 001711 359 YVNPYVTFTDAGRKWRCNICALLNDVPGDYFAHLDATGRRIDIDQRPELTKGSVEFVAPTEYMV--RPPMPPLYFFLIDV 436 (1021)
Q Consensus 359 YiNPf~~f~~~G~~W~CnlC~~~N~vP~~Y~~~l~~~g~R~D~~~rPEL~~gsVEfvap~eY~~--r~p~pp~yvFvIDv 436 (1021)
||||||+|+++|++|+||||+..|++|.+|+++++++|+|.|+++||||++|+|||++|.||+. |+|+||+|+|||||
T Consensus 103 yiNPf~~f~~~g~~w~Cn~C~~~N~~P~~Y~~~l~~~g~r~d~~~rpEL~~~~vef~a~~eY~~~~~~p~pp~y~FvIDv 182 (766)
T 3eh2_A 103 YMCPFMQFIEGGRRFQCCFCSCINDVPPQYFQHLDHTGKRVDAYDRPELSLGSYEFLATVDYCKNNKFPSPPAFIFMIDV 182 (766)
T ss_dssp BCCTTCEEEGGGTEEECTTTCCEEECCTTTTGGGGGSSSCCCCSCCHHHHCSEEEEECCGGGSGGGSCCCCCEEEEEEEC
T ss_pred EECCCEEEECCCCEEEECCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCEEEECCHHHCCCCCCCCCCEEEEEEEC
T ss_conf 82773588259988995245666889978833455346646644684236684233068755057889999789999988
Q ss_pred CHHHHHHCHHHHHHHHHHHHHHCCCCC-----CCCEEEEEEECCEEEEEECCCCCCCCCEEECCCCCCCCCCCCCCCCEE
Q ss_conf 166885237999999999997409999-----984399999767599982699999761431145322357889965230
Q 001711 437 SISAIRSGMLEVVAQTIKSCLDELPGF-----PRTQIGFITFDSTIHFYNMKSSLTQPQMMVISDLDDIFVPLPDDLLVN 511 (1021)
Q Consensus 437 S~~av~sG~l~~~~~sI~~~L~~Lp~~-----~rt~VgiITFds~Vhfy~l~~~~~~pqmlVvsDldd~f~P~p~~llv~ 511 (1021)
|.+++++|+++++|++|+++|+.||++ ++++|||||||++||||+++.++++++|+|++|++|+|+|++++||++
T Consensus 183 s~~av~sg~l~~~~~si~~~L~~lp~~~~~~~~~~~VG~ITfd~~vh~y~l~~~~~~~q~~vv~dl~d~f~P~~~~~lv~ 262 (766)
T 3eh2_A 183 SYNAIRTGLVRLLCEELKSLLDFLPREGGAEESAIRVGFVTYNKVLHFYNVKSSLAQPQMMVVSDVADMFVPLLDGFLVN 262 (766)
T ss_dssp SHHHHHTTHHHHHHHHHHHHGGGCCCCSSCSSCCCEEEEEEESSSEEEEECCTTCSSCEEEEECCTTTCCCCCCTTSSBC
T ss_pred CHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCEEEEEECCCCCCCCEEEEECCHHHHCCCCCCCEEEE
T ss_conf 43421031899999999999985875335677663599999588799997788777865998447566406654535676
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHH--CCCEEEEEECCCCC-CCCCCCCCCCCCCCCCCCCCC
Q ss_conf 266699999999528974358887665469999999999981--29889999427999-885332136886754689756
Q 001711 512 LSESRSVVDTLLDSLPSMFQDNMNVESAFGPALKAAFMVMSR--LGGKLLIFQNSLPS-LGVGCLKLRGDDLRVYGTDKE 588 (1021)
Q Consensus 512 l~es~~~I~~lLd~Lp~~f~~~~~~~~alG~AL~aA~~lL~~--~GGkIivF~s~~Pt-~GpG~L~~r~~~~r~~gt~ke 588 (1021)
++||++.|+++|++|+.+|.+++..++|+|+||++|+.+|+. .||||++|++|+|+ .|+|+|+.|++ .+..+++||
T Consensus 263 l~e~~~~i~~lL~~L~~~~~~~~~~~t~~g~al~aa~~~l~~~~~GGkI~~F~s~lP~t~GpG~l~~r~~-~~~~~sdke 341 (766)
T 3eh2_A 263 VNESRAVITSLLDQIPEMFADTRETETVFVPVIQAGMEALKAAECAGKLFLFHTSLPIAEAPGKLKNRDD-RKLINTDKE 341 (766)
T ss_dssp TTTTHHHHHHHHHHHHHHHTTCCCCCCCSHHHHHHHHHHHHHTTCCEEEEEEECSCCCSSSTTCCCCCCC-GGGTTSTTG
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCCC-CCCCCCCCH
T ss_conf 8998999999998616541578887641799999999983568988689999667898678862104554-556777200
Q ss_pred CCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCC
Q ss_conf 66788880789999999851791899997238976812144210345408999199987525779999999830244434
Q 001711 589 HSLRIPEDPFYKQMAADLTKFQIAVNVYAFSDKYTDIASLGTLAKYTGGQVYYYPSFQSTTHGERLRHELSRDLTRETAW 668 (1021)
Q Consensus 589 ~~l~~p~~~fYk~lA~~~~~~~IsVDlF~~s~~~~Diatl~~L~~~TGG~i~~y~~F~~~~d~~~l~~dL~r~ltr~~g~ 668 (1021)
+++++++++||++||++|+++||+||+|+++.+|+|+++|+.|++.|||.+++|++|+.++|.++|.+||.|.+++++||
T Consensus 342 ~~~~~~a~~fY~~la~~~~~~~i~VDlF~~s~~~vdlatl~~l~~~TGG~v~~y~~F~~~~d~~~f~~dl~~~l~~~~gf 421 (766)
T 3eh2_A 342 KTLFQPQTGAYQTLAKECVAQGCCVDLFLFPNQYVDVATLSVVPQLTGGSVYKYASFQVENDQERFLSDLRRDVQKVVGF 421 (766)
T ss_dssp GGGTSCSSTHHHHHHHHHHHHTEEEEEEECCSSCCCHHHHTHHHHHTTCCEEECTTCCHHHHHHHHHHHHHHHHHSCEEE
T ss_pred HHHCCCHHHHHHHHHHHHHHCCEEEEEEEECCCCCCHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCEE
T ss_conf 33206438999999999875786899998148776848787777606966999679860667899999999975325100
Q ss_pred CEEEEEEECCCEEEEEEECCCCCCCCCCEEECCCCCCCCEEEEEEECCCCCCCCEEEEEEEEEEEECCCCEEEEEEEEEE
Q ss_conf 24899994899179752068545898933613679998099999730454788505899999988349829999991200
Q 001711 669 EAVMRIRCGKGVRFTNYHGNFMLRSTDLLALPAVDCDKAYAMQLSLEETLLTTQTVYFQVALLYTASCGERRIRVHTLAA 748 (1021)
Q Consensus 669 ~a~lrVR~S~Gl~I~~~~Gnf~~rs~~~~~l~~id~d~Siav~l~~d~~l~~~~~~~iQ~AlLYT~~~GeRrIRV~Tl~l 748 (1021)
+|+||||||+||+|+++||||+++++++|+++++++|+||+|+|+|++++.+...+|||+|++||+.+|+|||||||+++
T Consensus 422 ~a~mrVR~S~glkv~~~~G~~~~~~t~~~~l~~i~~d~s~~v~f~~~~~l~~~~~~~~Q~allYt~~~G~RRiRV~T~~l 501 (766)
T 3eh2_A 422 DAVMRVRTSTGIRAVDFFGAFYMSNTTDVELAGLDGDKTVTVEFKHDDRLNEESGALLQCALLYTSCAGQRRLRIHNLAL 501 (766)
T ss_dssp EEEEEEEECTTEEEEEEEESCBCSSSSCEEEEEEETTCCEEEEEEESSCCCTTTCEEEEEEEEEECTTSCEEEEEEEEEE
T ss_pred EEEEEEEECCCEEEEEEECCEECCCCCCEEECCCCCCCEEEEEEEECCCCCCCCCEEEEEEEEEECCCCCEEEEEEEEEE
T ss_conf 17999995698379886778545897744622579885699999955777788857999999858089988999997744
Q ss_pred CCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 04689889998329858999999999999813999999999999999999999765421158997301451135089999
Q 001711 749 PVVSNLSDMYQQADTGAIVSVFSRLAIEKTLSHKLEDARNAVQLRLVKALKEYRNLYAVQHRLGSRMIYPESLKFLPLYC 828 (1021)
Q Consensus 749 pvts~l~~vf~s~D~~ai~~~laK~a~~~~l~~~l~d~R~~l~~~lv~iL~~YRk~~~a~~~~~~qLiLPesLklLPlyi 828 (1021)
+|++++.++|+++|+||++++|+|+|++++++++++++|+.++++|+++|++||| +|+..++.+||+|||+||+||+|+
T Consensus 502 ~vt~~~~~v~~~~Dqea~~~llar~av~~~~~~~~~~~R~~l~~~~~~~l~~Yrk-~~~~~~s~~ql~lp~~lkllP~~~ 580 (766)
T 3eh2_A 502 NCCTQLADLYRNCETDTLINYMAKFAYRGVLNSPVKAVRDTLITQCAQILACYRK-NCASPSSAGQLILPECMKLLPVYL 580 (766)
T ss_dssp EEESSHHHHHHTBCHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHHHH-HC------CCCCCCGGGTTHHHHH
T ss_pred EECCCHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH-HCCCCCCCCCEECCHHHHHHHHHH
T ss_conf 7528899999732999999999999998752089999999999999999999986-435888865431677899999999
Q ss_pred HHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCE
Q ss_conf 99620038889999999029999999991899887786250318993148788875677633445310231100268837
Q 001711 829 LAICKSTPIRGGYADVTLDERCAAGYTMMALPVKKLLKLLYPCLIRVDEHLLKPSAQLDEYKNIMKRLPLVAESLDSRGL 908 (1021)
Q Consensus 829 ~~LlKS~~Lr~g~~~~s~D~R~~~~~~l~s~~~~~~l~~lYPrLy~lh~l~~~~~~~~~~~~~lP~~l~LS~~~l~~~gi 908 (1021)
++|+||.+|+.+ .++++|||+|++++++++++..++.|+||+||++|++. .+...+|++++||.++|+++||
T Consensus 581 ~~L~Ks~~l~~~-~~~s~Der~~~~~~l~~~~~~~~l~~iyP~L~~~h~~~-------~~~~~~P~~v~ls~~~l~~~gi 652 (766)
T 3eh2_A 581 NCVLKSDVLQPG-AEVTTDDRAYVRQLVTSMDVTETNVFFYPRLLPLTKSP-------VESTTEPPAVRASEERLSNGDI 652 (766)
T ss_dssp HHHHTSTTTSCC-TTCCHHHHHHHHHHHHHCCHHHHHHHHSCEEEECSSCC-------CSCC--CCCBCSSGGGCCTTCE
T ss_pred HHHHCCHHHCCC-CCCCCCHHHHHHHHHHCCCHHHHHHHHHHEEEEEECCC-------CCCCCCCCCCCCCHHHCCCCCE
T ss_conf 999756853678-99983399999999977999999998753489962377-------5556689873776887178958
Q ss_pred EEEECCCEEEEEECCCCCHHHHHHHCCCCHHHHH--CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCC
Q ss_conf 9997794669983489999999751299335431--01013455418799999999999970999774189940699832
Q 001711 909 YIFDDGFRFVLWFGRMLSPDIAMNLLGSEFAAEL--SKVMLREQDNEMSRKLLGILKKLREQDPSYYQLCQLVRQGEQPR 986 (1021)
Q Consensus 909 yLLD~G~~i~lwvG~~v~~~ll~~lFGv~~~~~l--~~~~Lp~~~n~~s~~l~~iI~~lr~~r~~~~~l~~vvrqg~~~~ 986 (1021)
||||+|+.+|||+|+++++++++||||+++++++ ++..||++||++|+++|++|+++|++|..|+++ +|||||++.
T Consensus 653 yLlD~g~~i~lw~G~~v~~~~l~dlFgv~~~~~i~~~~~~lp~~~~~~s~~vr~ii~~lr~~~~~~~~l-~ivr~~~~~- 730 (766)
T 3eh2_A 653 YLLENGLNLFLWVGASVQQGVVQSLFSVSSFSQITSGLSVLPVLDNPLSKKVRGLIDSLRAQRSRYMKL-TVVKQEDKM- 730 (766)
T ss_dssp EEEECSSEEEEEECTTCCHHHHHHHHSCSSGGGSCTTCCSCCCCSSHHHHHHHHHHHHHHTTSSSCCEE-EEEESSSST-
T ss_pred EEEECCCEEEEEECCCCCHHHHHHHCCCCCHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEE-EEEECCCCH-
T ss_conf 999768579999668789899998729984565484446588899879999999999999748887408-999479975-
Q ss_pred HHHHHHHHCCCCCCC-CCCCHHHHHHHHHHHHHCC
Q ss_conf 599998600456999-9998999999999998119
Q 001711 987 EGFLLLANLVEDQIG-GSNGYADWIMQIHRQVLQN 1020 (1021)
Q Consensus 987 ~e~~f~~~LVED~~~-~~~SY~dFL~~lh~~I~~k 1020 (1021)
|.+|.++|||||+. +++||+||||+|||+|++|
T Consensus 731 -~~~f~~~LvED~~~~~~~SY~dfL~~lh~~i~~~ 764 (766)
T 3eh2_A 731 -EMLFKHFLVEDKSLSGGASYVDFLCHMHKEIRQL 764 (766)
T ss_dssp -HHHHHTTCTTSCCTTTCCCHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf -9999984812389999979999999999999975
No 3
>3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle transport, transport signal sequence, cytoplasm, endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B 2nup_B 3egd_B 3egx_B
Probab=1.00 E-value=1 Score=1397.51 Aligned_cols=710 Identities=39% Similarity=0.692 Sum_probs=661.1
Q ss_pred CCCCCCCCCC-CCCCCCEECCCCCCCCCHHHHHHCCCCEEEEECCCCCCCCC------CC---CCCCEEECCCEEEECCC
Q ss_conf 9997876522-58999210003655899877751377648898138889999------88---76553781660696089
Q 001711 301 PSSLAETYPL-NCHSRYLRLTTSAIPNSQSLVSRWHLPLGAVVCPLAEPPEG------NL---FICRTYVNPYVTFTDAG 370 (1021)
Q Consensus 301 Pp~~~~~~~~-N~~P~yiR~T~~~iP~t~~l~~~~~lPlgivv~Pfa~~~~~------e~---~rCrAYiNPf~~f~~~G 370 (1021)
.|...+++.. ||+|+|||+|||+||.|++++++++||||++|+||++..+. +. +||||||||||+|.+ |
T Consensus 26 ~~~~~~~~~~~n~~p~~~R~T~n~iP~t~~~~~~~~lPlg~~i~Pl~~~~~~P~v~~~~p~RC~rCrayiNPf~~f~~-~ 104 (751)
T 3eh1_A 26 VPNLNADLKKLNCSPDSFRCTLTNIPQTQALLNKAKLPLGLLLHPFRDLTQLPVITSNTIVRCRSCRTYINPFVSFID-Q 104 (751)
T ss_dssp CCCCCHHHHHHSCCTTTEEESBSSEESSHHHHHHHCCCCEEEECTTCCCSCCCEECCSCCCBCTTTCCBCCTTCEESS-S
T ss_pred CCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCEEEEC-C
T ss_conf 888776100258998857826344789999997278986999853876789994399999746686689078427822-9
Q ss_pred CEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCEEEEEEECCHHHHHHCHHHHHH
Q ss_conf 56997589997899843213458676657978888655542798726665589999976999996516688523799999
Q 001711 371 RKWRCNICALLNDVPGDYFAHLDATGRRIDIDQRPELTKGSVEFVAPTEYMVRPPMPPLYFFLIDVSISAIRSGMLEVVA 450 (1021)
Q Consensus 371 ~~W~CnlC~~~N~vP~~Y~~~l~~~g~R~D~~~rPEL~~gsVEfvap~eY~~r~p~pp~yvFvIDvS~~av~sG~l~~~~ 450 (1021)
++|+||||+..|++|.+|+++. ..+++.|.++||||++|+|||++|+|||+|+|+||+|+||||||++++++|+++++|
T Consensus 105 ~~w~Cn~C~~~N~~P~~y~~~~-~~~~~~d~~~rpEL~~~tvEy~~p~~y~~r~p~pp~yvFvIDvs~~a~~~g~l~~~~ 183 (751)
T 3eh1_A 105 RRWKCNLCYRVNDVPEEFMYNP-LTRSYGEPHKRPEVQNSTVEFIASSDYMLRPPQPAVYLFVLDVSHNAVEAGYLTILC 183 (751)
T ss_dssp SEEECTTTCCEEECCGGGC----------CGGGSHHHHCSEEEEEECGGGCSSSCCCCEEEEEEECSHHHHHHTHHHHHH
T ss_pred CEEECCCCCCCCCCCHHHHCCC-CCCCCCCCCCCCHHCCCEEEEECCHHHHCCCCCCCEEEEEEECCHHHHHHHHHHHHH
T ss_conf 9898255667788977871153-233336744483002522799757665047999857999997527665542999999
Q ss_pred HHHHHHHHCCCCCCCCEEEEEEECCEEEEEECCCCCCCCCEEECCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHCCCCC
Q ss_conf 99999974099999843999997675999826999997614311453223578899652302666999999995289743
Q 001711 451 QTIKSCLDELPGFPRTQIGFITFDSTIHFYNMKSSLTQPQMMVISDLDDIFVPLPDDLLVNLSESRSVVDTLLDSLPSMF 530 (1021)
Q Consensus 451 ~sI~~~L~~Lp~~~rt~VgiITFds~Vhfy~l~~~~~~pqmlVvsDldd~f~P~p~~llv~l~es~~~I~~lLd~Lp~~f 530 (1021)
++|+++|+.||++.|++|||||||++||||++++++++++|+|++|++|+|+|.+++||++++||++.|+++|++|+++|
T Consensus 184 ~sl~~~L~~lp~~~~~~VG~ITfd~~vh~y~l~~~~~~~qmlvv~dl~d~f~P~~~~~lv~l~e~~~~i~~lL~~Lp~~~ 263 (751)
T 3eh1_A 184 QSLLENLDKLPGDSRTRIGFMTFDSTIHFYNLQEGLSQPQMLIVSDIDDVFLPTPDSLLVNLYESKELIKDLLNALPNMF 263 (751)
T ss_dssp HHHHHHTTTSSCCTTCEEEEEEESSSEEEEECCTTCSSCEEEEESCTTCTTSCCGGGTSEETTTTHHHHHHHHHHGGGTS
T ss_pred HHHHHHHHHCCCCCCCEEEEEEECCEEEEEECCCCCCCCEEECCCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 99999998668986747999996877999977887666413423554445777804420029999999999998546753
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCC
Q ss_conf 58887665469999999999981298899994279998853321368867546897566678888078999999985179
Q 001711 531 QDNMNVESAFGPALKAAFMVMSRLGGKLLIFQNSLPSLGVGCLKLRGDDLRVYGTDKEHSLRIPEDPFYKQMAADLTKFQ 610 (1021)
Q Consensus 531 ~~~~~~~~alG~AL~aA~~lL~~~GGkIivF~s~~Pt~GpG~L~~r~~~~r~~gt~ke~~l~~p~~~fYk~lA~~~~~~~ 610 (1021)
.+++++++|+|+||++|..+|+.+||||++|++|+||+|+|+|+.|++ .+..+++||+++++++++||++||++|+++|
T Consensus 264 ~~~~~~~~~~G~AL~aA~~ll~~~GGrI~~F~sg~pt~GpG~l~~r~~-~~~~~~~ke~~~~~~a~~fY~~la~~~~~~~ 342 (751)
T 3eh1_A 264 TNTRETHSALGPALQAAFKLMSPTGGRVSVFQTQLPSLGAGLLQSRED-PNQRSSTKVVQHLGPATDFYKKLALDCSGQQ 342 (751)
T ss_dssp TTCSCCCCCHHHHHHHHHHHHTTTCEEEEEEECSCCCSSTTCCCCCCC-SCGGGGSSSCTTCSCSCSHHHHHHHHHHHTT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCC-CCCCCCCHHHHHHCCHHHHHHHHHHHHHHCC
T ss_conf 378887644599999999985147977999955799778875545555-5557870156550516899999999998659
Q ss_pred CEEEEEEECCCCCCHHHHHHHCCCCCCEEEEECCCCCCH---HHHHHHHHHHHHCCCCCCCCEEEEEEECCCEEEEEEEC
Q ss_conf 189999723897681214421034540899919998752---57799999998302444342489999489917975206
Q 001711 611 IAVNVYAFSDKYTDIASLGTLAKYTGGQVYYYPSFQSTT---HGERLRHELSRDLTRETAWEAVMRIRCGKGVRFTNYHG 687 (1021)
Q Consensus 611 IsVDlF~~s~~~~Diatl~~L~~~TGG~i~~y~~F~~~~---d~~~l~~dL~r~ltr~~g~~a~lrVR~S~Gl~I~~~~G 687 (1021)
|+||+|+++.+|+|+|+|+.|++.|||.+++|++|+.+. +.++|.+||+|.+++++||+|+||||||+||+|+++||
T Consensus 343 i~VDlF~~s~~~~dlatl~~l~~~TGG~v~~y~~F~~~~~~~~~~~f~~dl~r~l~~~~gf~a~mrVR~S~glkv~~~~G 422 (751)
T 3eh1_A 343 TAVDLFLLSSQYSDLASLACMSKYSAGCIYYYPSFHYTHNPSQAEKLQKDLKRYLTRKIGFEAVMRIRCTKGLSMHTFHG 422 (751)
T ss_dssp EEEEEEECCSSCCCHHHHTHHHHTTTCCEEECTTCBTTTBHHHHHHHHHHHHHHHHSCCEEEEEEEEEECTTEEEEEEES
T ss_pred CEEEEEECCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCEEEEEEEC
T ss_conf 62799971675567186777776068669996786543462688999999999986540232589997069848877667
Q ss_pred CCCCCCCCCEEECCCCCCCCEEEEEEECCCCCCCCEEEEEEEEEEEECCCCEEEEEEEEEECCCCCHHHHHHHCCHHHHH
Q ss_conf 85458989336136799980999997304547885058999999883498299999912000468988999832985899
Q 001711 688 NFMLRSTDLLALPAVDCDKAYAMQLSLEETLLTTQTVYFQVALLYTASCGERRIRVHTLAAPVVSNLSDMYQQADTGAIV 767 (1021)
Q Consensus 688 nf~~rs~~~~~l~~id~d~Siav~l~~d~~l~~~~~~~iQ~AlLYT~~~GeRrIRV~Tl~lpvts~l~~vf~s~D~~ai~ 767 (1021)
||+.+++++|+++++++|++|+|+|+|++++.+...+|||+|++||+.+|||||||||++++|++++.++|+++|+||++
T Consensus 423 ~~~~~~t~~~~l~~i~~d~s~~v~~~~~~~l~~~~~~~~Q~allYT~~~G~RRiRV~T~~l~vt~~~~~v~~~~DqeA~~ 502 (751)
T 3eh1_A 423 NFFVRSTDLLSLANINPDAGFAVQLSIEESLTDTSLVCFQTALLYTSSKGERRIRVHTLCLPVVSSLADVYAGVDVQAAI 502 (751)
T ss_dssp SSEECSSSEEEEEEECTTCCEEEEEEESSCCCSCSEEEEEEEEEEECTTSCEEEEEEEEEEEEECSHHHHHHTBCHHHHH
T ss_pred CEEECCCCCEEECCCCCCCEEEEEEEECCCCCCCCCEEEEEEEEEECCCCCEEEEEEEECCCCCCCHHHHHHHCCHHHHH
T ss_conf 75817987367126797878999999757777888459999894562899889999986421258899998735999999
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHH
Q ss_conf 99999999998139999999999999999999997654211589973014511350899999962003888999999902
Q 001711 768 SVFSRLAIEKTLSHKLEDARNAVQLRLVKALKEYRNLYAVQHRLGSRMIYPESLKFLPLYCLAICKSTPIRGGYADVTLD 847 (1021)
Q Consensus 768 ~~laK~a~~~~l~~~l~d~R~~l~~~lv~iL~~YRk~~~a~~~~~~qLiLPesLklLPlyi~~LlKS~~Lr~g~~~~s~D 847 (1021)
++|+|+|+++++++++.|+|++++++|+++++.||+ +|.. ..++||+|||+||+||+|+++|+||.+|+.+ .++++|
T Consensus 503 ~llar~av~~~~~~~l~d~r~~l~~~li~il~~Yr~-~~~~-~~~~~l~lpe~lkllP~~~~~L~Ks~~~~~~-~~~s~D 579 (751)
T 3eh1_A 503 CLLANMAVDRSVSSSLSDARDALVNAVVDSLSAYGS-TVSN-LQHSALMAPSSLKLFPLYVLALLKQKAFRTG-TSTRLD 579 (751)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHT-TCC------CCEEEGGGTTHHHHHHHHHTSTTTCCS-SCCCHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH-HCCC-CCCCCCCCCHHHHHHHHHHHHHHCCHHHCCC-CCCCHH
T ss_conf 999999999874199999999999999999999987-5456-8886511767788999999999733853588-999910
Q ss_pred HHHHHHHHHCCCCHHHHHHHHCCCEEEEECCCCCCCCC-CCCCCCCCCCCCCCHHHCCCCCEEEEECCCEEEEEECCCCC
Q ss_conf 99999999918998877862503189931487888756-77633445310231100268837999779466998348999
Q 001711 848 ERCAAGYTMMALPVKKLLKLLYPCLIRVDEHLLKPSAQ-LDEYKNIMKRLPLVAESLDSRGLYIFDDGFRFVLWFGRMLS 926 (1021)
Q Consensus 848 ~R~~~~~~l~s~~~~~~l~~lYPrLy~lh~l~~~~~~~-~~~~~~lP~~l~LS~~~l~~~giyLLD~G~~i~lwvG~~v~ 926 (1021)
+|+|++++++++++..++.|+||+||++|++..+.... +++.+.+|..++||.++|+++||||||+|+.+|||+|++++
T Consensus 580 er~~~~~~l~~~~~~~~~~~iyP~L~~~h~l~~~~~~~~~~~~~~~P~~l~ls~~~l~~~giyLlD~g~~i~lw~G~~v~ 659 (751)
T 3eh1_A 580 DRVYAMCQIKSQPLVHLMKMIHPNLYRIDRLTDEGAVHVNDRIVPQPPLQKLSAEKLTREGAFLMDCGSVFYIWVGKGCD 659 (751)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHSCEEEECTTCCSTTCEEETTEEECCCCCBCSSGGGCCTTSEEEEECSSEEEEEECTTCC
T ss_pred HHHHHHHHHHCCCHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCEEEEECCCEEEEEECCCCC
T ss_conf 99999999967999998864266289820476335756688766789734677988225878999789889999779899
Q ss_pred HHHHHHHCCCCHHHHH--CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHCCCCCCCCCC
Q ss_conf 9999751299335431--01013455418799999999999970999774189940699832599998600456999999
Q 001711 927 PDIAMNLLGSEFAAEL--SKVMLREQDNEMSRKLLGILKKLREQDPSYYQLCQLVRQGEQPREGFLLLANLVEDQIGGSN 1004 (1021)
Q Consensus 927 ~~ll~~lFGv~~~~~l--~~~~Lp~~~n~~s~~l~~iI~~lr~~r~~~~~l~~vvrqg~~~~~e~~f~~~LVED~~~~~~ 1004 (1021)
+++++||||++++.++ ....||+++|++|+++|++|+++|++|..++.+ +|+|||++. |.+|.++|||||+++++
T Consensus 660 ~~ll~dlFGv~~~~~~~~~~~~lp~~~t~~s~~vr~ii~~lr~~r~~~~~l-~vvr~~~~~--~~~f~~~LvED~~~~~~ 736 (751)
T 3eh1_A 660 NNFIEDVLGYTNFASIPQKMTHLPELDTLSSERARSFITWLRDSRPLSPIL-HIVKDESPA--KAEFFQHLIEDRTEAAF 736 (751)
T ss_dssp HHHHHHTTCCSSGGGCCSSBCCCCCCSSHHHHHHHHHHHHHHHTSSSCCEE-EEEESSSSS--HHHHHTTCTTSCBTTBC
T ss_pred HHHHHHHCCCCCHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEE-EEEECCCCH--HHHHHHHCCCCCCCCCC
T ss_conf 899999709994553685335687778878999999999998509876459-999589846--99999847343999999
Q ss_pred CHHHHHHHHHHHHHC
Q ss_conf 899999999999811
Q 001711 1005 GYADWIMQIHRQVLQ 1019 (1021)
Q Consensus 1005 SY~dFL~~lh~~I~~ 1019 (1021)
||+||||+|||+|++
T Consensus 737 SY~~fL~~~h~~i~~ 751 (751)
T 3eh1_A 737 SYYEFLLHVQQQICK 751 (751)
T ss_dssp CHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHCC
T ss_conf 999999999998419
No 4
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1
Probab=1.00 E-value=1 Score=1393.92 Aligned_cols=752 Identities=30% Similarity=0.543 Sum_probs=684.7
Q ss_pred CCCCCCCCC-CCCCCCCCC-----CCCCCCCCCCCCCCCCCCCCCCCCCCCC-----CCCCC----CCCCCCEECCCCCC
Q ss_conf 742233111-234677899-----9998899889999999999999999978-----76522----58999210003655
Q 001711 260 VGVIQGLAE-DFSSLSFGS-----IPGSIEPGIDLKSLPRPLDGDVEPSSLA-----ETYPL----NCHSRYLRLTTSAI 324 (1021)
Q Consensus 260 ~~~~~~~~~-~~~~~~~~~-----~~~~~dp~~~~~~ip~p~~~~~~Pp~~~-----~~~~~----N~~P~yiR~T~~~i 324 (1021)
.++++++++ +|+.|++|. ..+.+.++-=..++|.++.....||+.. +.|++ ||+|+|||+|||+|
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ppp~~~~~~~~~~~~~d~gn~~p~~vR~T~n~i 189 (926)
T 1m2v_B 110 QQQQQPMAAPAYGQPSAAMGQNMRPMNQLYPIDLLTELPPPITDLTLPPPPLVIPPERMLVPSELSNASPDYIRSTLNAV 189 (926)
T ss_dssp -----------------------CCCCCCCEEETTTSCSCCCSGGGSCCCCCCCCGGGSSSCSSSSSCCTTTEEESBSSE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCC
T ss_conf 65656533111012676766666675662232220157999754579999777899861114557789988446411447
Q ss_pred CCCHHHHHHCCCCEEEEECCCCCCCCCCC-------------CCCCEEECCCEEEECCCCEEEECCCCCCCCCCCCCCCC
Q ss_conf 89987775137764889813888999988-------------76553781660696089569975899978998432134
Q 001711 325 PNSQSLVSRWHLPLGAVVCPLAEPPEGNL-------------FICRTYVNPYVTFTDAGRKWRCNICALLNDVPGDYFAH 391 (1021)
Q Consensus 325 P~t~~l~~~~~lPlgivv~Pfa~~~~~e~-------------~rCrAYiNPf~~f~~~G~~W~CnlC~~~N~vP~~Y~~~ 391 (1021)
|.|++++++++||||++|+||++..+.++ +||||||||||+|+++|++|+||||+..|++|.+|+
T Consensus 190 P~t~~l~~~~~lPlg~vv~P~a~~~~~~~~vpvv~~~~pvRC~rCrAYiNPf~~~~~~g~~W~CnfC~~~N~~P~~Y~-- 267 (926)
T 1m2v_B 190 PKNSSLLKKSKLPFGLVIRPYQHLYDDIDPPPLNEDGLIVRCRRCRSYMNPFVTFIEQGRRWRCNFCRLANDVPMQMD-- 267 (926)
T ss_dssp ESBHHHHHHHTCCCEEEECSCCSSSTTSSCCCEECSCCCCBCSSSCCBCCTTCEEETTTTEEECTTTCCEEECCGGGT--
T ss_pred CCCHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCEEEECCCCEEECCCCCCCCCCCHHHC--
T ss_conf 999999972789848998527776667788870389999736985588168259937998798547898789966652--
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCEEEEEEECCHHHHHHCHHHHHHHHHHHHHHCCCC-CCCCEEEE
Q ss_conf 58676657978888655542798726665589999976999996516688523799999999999740999-99843999
Q 001711 392 LDATGRRIDIDQRPELTKGSVEFVAPTEYMVRPPMPPLYFFLIDVSISAIRSGMLEVVAQTIKSCLDELPG-FPRTQIGF 470 (1021)
Q Consensus 392 l~~~g~R~D~~~rPEL~~gsVEfvap~eY~~r~p~pp~yvFvIDvS~~av~sG~l~~~~~sI~~~L~~Lp~-~~rt~Vgi 470 (1021)
++++|+|.|+++||||++++|||++|+||++|+++||+|+||||||.+++++|+++++|++|+.+|+.||+ +++++|||
T Consensus 268 ~~~~~~~~d~~~RpEL~~~tvEyi~p~ey~~r~p~ppvyvFvIDvS~~av~~g~l~~l~~sI~~~L~~LP~~~~~~~VGl 347 (926)
T 1m2v_B 268 QSDPNDPKSRYDRNEIKCAVMEYMAPKEYTLRQPPPATYCFLIDVSQSSIKSGLLATTINTLLQNLDSIPNHDERTRISI 347 (926)
T ss_dssp TTSTTCGGGGGGSHHHHCSEEEEECCGGGCSSCCCCCBEEEEEECSHHHHHSCHHHHHHHHHHHTTTTSCCTTSCCEECE
T ss_pred CCCCCCCCCCCCCCCCCCCEEEEECCHHHCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEE
T ss_conf 45446856401274215762899727021147999868999998977887622999999999999985778788727999
Q ss_pred EEECCEEEEEECCCCCC-------CCCEEECCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHH
Q ss_conf 99767599982699999-------76143114532235788996523026669999999952897435888766546999
Q 001711 471 ITFDSTIHFYNMKSSLT-------QPQMMVISDLDDIFVPLPDDLLVNLSESRSVVDTLLDSLPSMFQDNMNVESAFGPA 543 (1021)
Q Consensus 471 ITFds~Vhfy~l~~~~~-------~pqmlVvsDldd~f~P~p~~llv~l~es~~~I~~lLd~Lp~~f~~~~~~~~alG~A 543 (1021)
||||++||||+++.++. +++|+|++|+||+|+|++++||++++||++.|+++||+|+.+|.++++.++|+|+|
T Consensus 348 ITFds~Vh~y~l~~~~~g~k~~~~q~qmlvvsdl~d~f~P~~~~~Lv~l~e~~~~I~~lLe~L~~~~~~~~~~~~~~G~A 427 (926)
T 1m2v_B 348 LCVDNAIHYFKIPLDSENNEESADQINMMDIADLEEPFLPRPNSMVVSLKACRQNIETLLTKIPQIFQSNLITNFALGPA 427 (926)
T ss_dssp EEESSSEEEEECCCC---------CCEEEEECCCSSCCCSCSSSSSEETTTTHHHHHHHHHHHHHHTSSCCCCCCCHHHH
T ss_pred EEECCEEEEEECCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHH
T ss_conf 99898799995677666774441261211445621146778422133189999999999986165404788887428999
Q ss_pred HHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCHHHHHHHHHHHHCCCEEEEEEECCCC
Q ss_conf 99999999812988999942799988533213688675468975666-78888078999999985179189999723897
Q 001711 544 LKAAFMVMSRLGGKLLIFQNSLPSLGVGCLKLRGDDLRVYGTDKEHS-LRIPEDPFYKQMAADLTKFQIAVNVYAFSDKY 622 (1021)
Q Consensus 544 L~aA~~lL~~~GGkIivF~s~~Pt~GpG~L~~r~~~~r~~gt~ke~~-l~~p~~~fYk~lA~~~~~~~IsVDlF~~s~~~ 622 (1021)
|++|..+|+.+||||++|++|+||+|+|+|+.|++ .+.++++||+. +++++++||++||.+|++++|+||||+++.+|
T Consensus 428 L~aA~~lL~~~GGrI~~F~sg~Pt~GpG~l~~re~-~~~~~~~ke~~~ll~~a~~FYk~LA~~~~~~gisVDlF~~s~~~ 506 (926)
T 1m2v_B 428 LKSAYHLIGGVGGKIIVVSGTLPNLGIGKLQRRNE-SGVVNTSKETAQLLSCQDSFYKNFTIDCSKVQITVDLFLASEDY 506 (926)
T ss_dssp HHHHHHHHTTTCEEEEEEESSCCCSSTTCCCCCCC-----CCTTHHHHHTSCSSTHHHHHHHHHHHHTEEEEEEEEESSC
T ss_pred HHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCC-CCCCCCCCCHHHHCCCHHHHHHHHHHHHHHCCEEEEEEECCCCC
T ss_conf 99999999851988999956899778876656631-00168531023313510799999999999769379999736877
Q ss_pred CCHHHHHHHCCCCCCEEEEECCCCCCH--HHHHHHHHHHHHCCCCCCCCEEEEEEECCCEEEEEEECCCCCCCCCCEEEC
Q ss_conf 681214421034540899919998752--577999999983024443424899994899179752068545898933613
Q 001711 623 TDIASLGTLAKYTGGQVYYYPSFQSTT--HGERLRHELSRDLTRETAWEAVMRIRCGKGVRFTNYHGNFMLRSTDLLALP 700 (1021)
Q Consensus 623 ~Diatl~~L~~~TGG~i~~y~~F~~~~--d~~~l~~dL~r~ltr~~g~~a~lrVR~S~Gl~I~~~~Gnf~~rs~~~~~l~ 700 (1021)
+|+++|+.|++.|||.+++|++|+.++ |..+|.+|+.+.+++++||+|+||||||+||+|+++||||+.+++++|+++
T Consensus 507 vdla~l~~l~~~TGG~v~~y~~F~~~~~~d~~kf~~dl~~~Lt~~~gf~a~mrVR~S~glkv~~~~G~~~~~~s~~~~l~ 586 (926)
T 1m2v_B 507 MDVASLSNLSRFTAGQTHFYPGFSGKNPNDIVKFSTEFAKHISMDFCMETVMRARGSTGLRMSRFYGHFFNRSSDLCAFS 586 (926)
T ss_dssp CCHHHHHHHHHTTTCCEEEEESCCTTSHHHHHHHHHHHHHHHHSCCEEEEEEEEEECTTEEEEEEESSSBCSSTTEEEEE
T ss_pred CCHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCEEEEEEEEECCCCEEEEEECCCCCCCCCCEEEE
T ss_conf 68388887876379669981887621266799999999977554300347999980798079874367244676766730
Q ss_pred CCCCCCCEEEEEEECCCCCCCCEEEEEEEEEEEECCCCEEEEEEEEEECCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHC
Q ss_conf 67999809999973045478850589999998834982999999120004689889998329858999999999999813
Q 001711 701 AVDCDKAYAMQLSLEETLLTTQTVYFQVALLYTASCGERRIRVHTLAAPVVSNLSDMYQQADTGAIVSVFSRLAIEKTLS 780 (1021)
Q Consensus 701 ~id~d~Siav~l~~d~~l~~~~~~~iQ~AlLYT~~~GeRrIRV~Tl~lpvts~l~~vf~s~D~~ai~~~laK~a~~~~l~ 780 (1021)
++++|+||+|+|++++++. ...+|||+|++||+.+|+|||||||++++|++++.++|+++|+||++++|+|+|++++++
T Consensus 587 ~l~~d~s~av~f~~~~~l~-~~~~~~Q~allYT~~~G~RRiRV~T~~l~vt~~l~~v~~s~Dqea~~~llar~av~~~~~ 665 (926)
T 1m2v_B 587 TMPRDQSYLFEVNVDESIM-ADYCYVQVAVLLSLNNSQRRIRIITLAMPTTESLAEVYASADQLAIASFYNSKAVEKALN 665 (926)
T ss_dssp EECSSCCEEEEEEECSBCC-SSEEEEEEEEEEEETTTEEEEEEEEEEEEEESCHHHHHHTBCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEEEEECCCCC-CCCEEEEEEEEEECCCCCEEEEEEEECCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHC
T ss_conf 5688877999999656778-885799999988869997899999405556688999998529999999999999987630
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC--CCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCC
Q ss_conf 999999999999999999999765421158997--301451135089999996200388899999990299999999918
Q 001711 781 HKLEDARNAVQLRLVKALKEYRNLYAVQHRLGS--RMIYPESLKFLPLYCLAICKSTPIRGGYADVTLDERCAAGYTMMA 858 (1021)
Q Consensus 781 ~~l~d~R~~l~~~lv~iL~~YRk~~~a~~~~~~--qLiLPesLklLPlyi~~LlKS~~Lr~g~~~~s~D~R~~~~~~l~s 858 (1021)
+++.|+|++|+++|+++|++||| +|+..+..+ +|+|||+||+||+|+++|+||.+|+ + .+.+.|||+|+++++++
T Consensus 666 ~~~~d~r~~L~~~li~il~~Yrk-~~~~~~~~~~~sl~Lp~~lkllP~~~~~L~KS~~l~-~-~~~p~Dera~~~~~l~~ 742 (926)
T 1m2v_B 666 SSLDDARVLINKSVQDILATYKK-EIVVSNTAGGAPLRLCANLRMFPLLMHSLTKHMAFR-S-GIVPSDHRASALNNLES 742 (926)
T ss_dssp SCSHHHHHHHHHHHHHHHHHHHH-HTCCCTTSSSSCCEEEGGGTTHHHHHHHHHTSTTTC-S-SCCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH-HCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHC-C-CCCCCCHHHHHHHHHHC
T ss_conf 88999999999999999999864-144456777753206778999999999986154107-9-99891399999999985
Q ss_pred CCHHHHHHHHCCCEEEEECCCCCCC-------CCCCCCCCCCCCCCCCHHHCCCCCEEEEECCCEEEEEECCCCCHHHHH
Q ss_conf 9988778625031899314878887-------567763344531023110026883799977946699834899999997
Q 001711 859 LPVKKLLKLLYPCLIRVDEHLLKPS-------AQLDEYKNIMKRLPLVAESLDSRGLYIFDDGFRFVLWFGRMLSPDIAM 931 (1021)
Q Consensus 859 ~~~~~~l~~lYPrLy~lh~l~~~~~-------~~~~~~~~lP~~l~LS~~~l~~~giyLLD~G~~i~lwvG~~v~~~ll~ 931 (1021)
+++..++.|+||+||++|++..+.. ..+++++.+|++++||.++|+++|+||||+|..+|+|+|+++++++++
T Consensus 743 ~~~~~l~~~iyP~L~s~h~~~~~~g~~~~~~~~~~~~~~~~P~~l~Ls~~~l~~~g~yLld~G~~i~lWvG~~~~p~ll~ 822 (926)
T 1m2v_B 743 LPLKYLIKNIYPDVYSLHDMADEAGLPVQTEDGEATGTIVLPQPINATSSLFERYGLYLIDNGNELFLWMGGDAVPALVF 822 (926)
T ss_dssp SCHHHHHHHHSCEEEETTTCCSSCSCC---------CCCCCCCCBCSCSTTCCTTCEEEEECSSEEEEEECTTCCSGGGC
T ss_pred CCHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCEEEEECCCEEEEEECCCCCHHHHH
T ss_conf 99999997406768970357501266433445555565356874067699836698899987988999966889979999
Q ss_pred HHCCCCHHHHH--CCCCCCCC-CHHHHHHHHHHHHHHHHHCC--CCCCEEEEECCCCCC------------CHHHHHHHH
Q ss_conf 51299335431--01013455-41879999999999997099--977418994069983------------259999860
Q 001711 932 NLLGSEFAAEL--SKVMLREQ-DNEMSRKLLGILKKLREQDP--SYYQLCQLVRQGEQP------------REGFLLLAN 994 (1021)
Q Consensus 932 ~lFGv~~~~~l--~~~~Lp~~-~n~~s~~l~~iI~~lr~~r~--~~~~l~~vvrqg~~~------------~~e~~f~~~ 994 (1021)
|+||++++.++ ++..||++ +|++++++|++|++||++|. .++++ +||||+++. ..|.||.++
T Consensus 823 dlFg~~~~~~i~~~~~~lp~l~~~~~s~~lr~iI~~lr~~r~~~~~~~l-~ivr~~~~~~~~~~~~~~~~~~~~~~f~~~ 901 (926)
T 1m2v_B 823 DVFGTQDIFDIPIGKQEIPVVENSEFNQRVRNIINQLRNHDDVITYQSL-YIVRGASLSEPVNHASAREVATLRLWASST 901 (926)
T ss_dssp -------------------------CHHHHHHHHHHTTCCSSCCCCCEE-EEEC------------CCHHHHHHHHHHHT
T ss_pred HHHCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEE-EEEECCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 8728873544474324476678986999999999999975788777428-999468888743221110014589999974
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 0456999999899999999999811
Q 001711 995 LVEDQIGGSNGYADWIMQIHRQVLQ 1019 (1021)
Q Consensus 995 LVED~~~~~~SY~dFL~~lh~~I~~ 1019 (1021)
||||++++++||+||||+|||+|++
T Consensus 902 LvED~~~~~~SY~dfL~~lh~~i~~ 926 (926)
T 1m2v_B 902 LVEDKILNNESYREFLQIMKARISK 926 (926)
T ss_dssp CTTSSCTTCCCHHHHHHHHHHHHCC
T ss_pred CEECCCCCCCCHHHHHHHHHHHHHC
T ss_conf 8660889989999999999999629
No 5
>1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A
Probab=1.00 E-value=1 Score=1364.63 Aligned_cols=706 Identities=31% Similarity=0.570 Sum_probs=659.2
Q ss_pred CCCCC----CCCCCCEECCCCCCCCCHHHHHHCCCCEEEEECCCCCCCCCCC-------------CCCCEEECCCEEEEC
Q ss_conf 76522----5899921000365589987775137764889813888999988-------------765537816606960
Q 001711 306 ETYPL----NCHSRYLRLTTSAIPNSQSLVSRWHLPLGAVVCPLAEPPEGNL-------------FICRTYVNPYVTFTD 368 (1021)
Q Consensus 306 ~~~~~----N~~P~yiR~T~~~iP~t~~l~~~~~lPlgivv~Pfa~~~~~e~-------------~rCrAYiNPf~~f~~ 368 (1021)
+.|++ ||+|+|||+|||+||.|++++++++||||++|+||++..+++. +||||||||||+|++
T Consensus 51 ~~~~~~d~~n~~p~~vR~T~n~iP~t~~~~~~~~lPlg~vv~P~~~~~~~~~~~pvv~~~~pvRC~~CrayiNPf~~~~~ 130 (810)
T 1pcx_A 51 RMLVPSELSNASPDYIRSTLNAVPKNSSLLKKSKLPFGLVIRPYQHLYDDIDPPPLNEDGLIVRCRRCRSYMNPFVTFIE 130 (810)
T ss_dssp GSSSCSGGGSCCTTTEEESBSSEESSHHHHHHHTCCCEEEECSCCSSSTTSSCCCEECSCCCCBCTTTCCBCCTTCEEET
T ss_pred CCCCCCCCCCCCCCCEEEECCCCCCCHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCEEEEC
T ss_conf 71104557789988246321447999999972799859999617766667888870389999736985588068259937
Q ss_pred CCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCEEEEEEECCHHHHHHCHHHH
Q ss_conf 89569975899978998432134586766579788886555427987266655899999769999965166885237999
Q 001711 369 AGRKWRCNICALLNDVPGDYFAHLDATGRRIDIDQRPELTKGSVEFVAPTEYMVRPPMPPLYFFLIDVSISAIRSGMLEV 448 (1021)
Q Consensus 369 ~G~~W~CnlC~~~N~vP~~Y~~~l~~~g~R~D~~~rPEL~~gsVEfvap~eY~~r~p~pp~yvFvIDvS~~av~sG~l~~ 448 (1021)
+|++|+||||+..|++|.+|+ ++++|+|.|+++||||++++|||++|++|++|+++||+|+||||+|.+++++|++++
T Consensus 131 ~g~~W~C~~C~~~N~~P~~y~--~~~~~~~~d~~~RpEL~~~tvEy~~p~~y~~~~p~pp~yvFvIDvs~~av~~g~l~~ 208 (810)
T 1pcx_A 131 QGRRWRCNFCRLANDVPMQMD--QSDPNDPKSRYDRNEIKCAVMEYMAPKEYTLRQPPPATYCFLIDVSQSSIKSGLLAT 208 (810)
T ss_dssp TTTEEECTTTCCEEECCGGGG--C-----CCCGGGSHHHHCSEEEEECCGGGCSSCCCCCEEEEEEECSHHHHHHTHHHH
T ss_pred CCCEEECCCCCCCCCCCHHHC--CCCCCCCCCCCCCCCCCCCEEEEECCCHHCCCCCCCCEEEEEEECCHHHHHHHHHHH
T ss_conf 998798557898589966651--454468564012742257639998270211479998689999989768876129999
Q ss_pred HHHHHHHHHHCCCC-CCCCEEEEEEECCEEEEEECCCCCC-------CCCEEECCCCCCCCCCCCCCCCEEHHHHHHHHH
Q ss_conf 99999999740999-9984399999767599982699999-------761431145322357889965230266699999
Q 001711 449 VAQTIKSCLDELPG-FPRTQIGFITFDSTIHFYNMKSSLT-------QPQMMVISDLDDIFVPLPDDLLVNLSESRSVVD 520 (1021)
Q Consensus 449 ~~~sI~~~L~~Lp~-~~rt~VgiITFds~Vhfy~l~~~~~-------~pqmlVvsDldd~f~P~p~~llv~l~es~~~I~ 520 (1021)
+|++|+.+|+.||+ +++++|||||||++||||+++.++. +++|++++|++|+|+|++++||++++||++.|+
T Consensus 209 ~~~si~~~L~~Lp~~~~~~~VGlITfd~~V~~~~l~~~~~g~k~~~~q~~mlvv~dl~d~f~P~~~~~Lv~l~e~~~~i~ 288 (810)
T 1pcx_A 209 TINTLLQNLDSIPNHDERTRISILCVDNAIHYFKIPLDSENNEESADQINMMDIADLEEPFLPRPNSMVVSLKACRQNIE 288 (810)
T ss_dssp HHHHHHHHTTTSCCTTSCCEEEEEEESSSEEEEECCCGGGC-------CEEECCCCTTCC-----TTTSEETTTTHHHHH
T ss_pred HHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEECCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 99999999985777787737999998987999956765567644202612103356000367773011665899999999
Q ss_pred HHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCHHH
Q ss_conf 9995289743588876654699999999999812988999942799988533213688675468975666-788880789
Q 001711 521 TLLDSLPSMFQDNMNVESAFGPALKAAFMVMSRLGGKLLIFQNSLPSLGVGCLKLRGDDLRVYGTDKEHS-LRIPEDPFY 599 (1021)
Q Consensus 521 ~lLd~Lp~~f~~~~~~~~alG~AL~aA~~lL~~~GGkIivF~s~~Pt~GpG~L~~r~~~~r~~gt~ke~~-l~~p~~~fY 599 (1021)
++|++|+.+|.+++++++|+|+||++|..+|+..||||++|++|+||+|+|+|+.|++ .+.++++||+. +++++++||
T Consensus 289 ~lL~~L~~~~~~~~~~~~a~G~AL~~A~~lL~~~GGrI~~F~sg~pt~GpG~l~~r~~-~~~~~~~ke~~~l~~~a~~fY 367 (810)
T 1pcx_A 289 TLLTKIPQIFQSNLITNFALGPALKSAYHLIGGVGGKIIVVSGTLPNLGIGKLQRRNE-SGVVNTSKETAQLLSCQDSFY 367 (810)
T ss_dssp HHHHHHHHHTTTCCCCCCCHHHHHHHHHHHHTTTCEEEEEEESSCCCSSTTCCCC---------------------CCHH
T ss_pred HHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCC-CCCCCCCCCHHHHCCCCHHHH
T ss_conf 9998543430578888751899999999998742988999956799778876666531-001686310123136216999
Q ss_pred HHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHCCCCCCEEEEECCCCCCH--HHHHHHHHHHHHCCCCCCCCEEEEEEEC
Q ss_conf 99999985179189999723897681214421034540899919998752--5779999999830244434248999948
Q 001711 600 KQMAADLTKFQIAVNVYAFSDKYTDIASLGTLAKYTGGQVYYYPSFQSTT--HGERLRHELSRDLTRETAWEAVMRIRCG 677 (1021)
Q Consensus 600 k~lA~~~~~~~IsVDlF~~s~~~~Diatl~~L~~~TGG~i~~y~~F~~~~--d~~~l~~dL~r~ltr~~g~~a~lrVR~S 677 (1021)
++||.+|+++||+||+|+++.+|+|+++|+.|++.|||.+++|++|+.++ |..+|.+|+.+.+++++||+|+||||||
T Consensus 368 ~~la~~~~~~gi~VDlF~~s~~~~dla~l~~l~~~TGG~v~~y~~F~~~~~~d~~~f~~dl~~~l~~~~gf~a~mrVR~S 447 (810)
T 1pcx_A 368 KNFTIDCSKVQITVDLFLASEDYMDVASLSNLSRFTAGQTHFYPGFSGKNPNDIVKFSTEFAKHISMDFCMETVMRARGS 447 (810)
T ss_dssp HHHHHHHHHTTEEEEEEEEESSCCCHHHHHHHHHTTTCCEEEEETCCTTSHHHHHHHHHHHHHHHHCCCCEEEEEEEEEC
T ss_pred HHHHHHHHHCCEEEEEEECCCCCCCHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCEEEEEEEECC
T ss_conf 99999999779389999816876585999877753796799828975123677999999999876542030279999807
Q ss_pred CCEEEEEEECCCCCCCCCCEEECCCCCCCCEEEEEEECCCCCCCCEEEEEEEEEEEECCCCEEEEEEEEEECCCCCHHHH
Q ss_conf 99179752068545898933613679998099999730454788505899999988349829999991200046898899
Q 001711 678 KGVRFTNYHGNFMLRSTDLLALPAVDCDKAYAMQLSLEETLLTTQTVYFQVALLYTASCGERRIRVHTLAAPVVSNLSDM 757 (1021)
Q Consensus 678 ~Gl~I~~~~Gnf~~rs~~~~~l~~id~d~Siav~l~~d~~l~~~~~~~iQ~AlLYT~~~GeRrIRV~Tl~lpvts~l~~v 757 (1021)
+||+|+++||||+.+++++|+++++++|+||+|+|++++++. ...+|||+|++||+.+|+|||||||++++|++++.++
T Consensus 448 ~gl~v~~~~G~~~~~~~~~~~l~~~~~d~s~~v~f~~~~~l~-~~~~~~Q~allYt~~~G~RRiRV~T~~~~vt~~~~~v 526 (810)
T 1pcx_A 448 TGLRMSRFYGHFFNRSSDLCAFSTMPRDQSYLFEVNVDESIM-ADYCYVQVAVLLSLNNSQRRIRIITLAMPTTESLAEV 526 (810)
T ss_dssp TTEEEEEEESSSBCSSSSEEEESSCCSSCCEEEEEEECSCCC-SSEEEEEEEEEEECTTSCEEEEEEEEEEEEESCHHHH
T ss_pred CCEEEEEEECCCCCCCCCCEEEECCCCCCEEEEEEEECCCCC-CCCEEEEEEEEEECCCCCEEEEEEECCCCCCCCHHHH
T ss_conf 980798744672546767668305798877999999656778-8867999999888699978999991375566889999
Q ss_pred HHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC--CCCCCCCCCCHHHHHHHHHHCC
Q ss_conf 98329858999999999999813999999999999999999999765421158997--3014511350899999962003
Q 001711 758 YQQADTGAIVSVFSRLAIEKTLSHKLEDARNAVQLRLVKALKEYRNLYAVQHRLGS--RMIYPESLKFLPLYCLAICKST 835 (1021)
Q Consensus 758 f~s~D~~ai~~~laK~a~~~~l~~~l~d~R~~l~~~lv~iL~~YRk~~~a~~~~~~--qLiLPesLklLPlyi~~LlKS~ 835 (1021)
|+++|++|++++|+|+|+++++++++.|+|++++++|+++|++||| +|+..+..+ +|+||++||+||+|+++|+||.
T Consensus 527 ~~~~Dqea~~~llar~av~~~~~~~~~d~r~~l~~~li~il~~Yrk-~~~~~~~~~~~~l~lp~~lkllP~~~~~L~ks~ 605 (810)
T 1pcx_A 527 YASADQLAIASFYNSKAVEKALNSSLDDARVLINKSVQDILATYKK-EIVVSNTAGGAPLRLCANLRMFPLLMHSLTKHM 605 (810)
T ss_dssp HHTBCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHH-HCC----CCSSCCEEEGGGTTHHHHHHHHHTST
T ss_pred HHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH-HCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCH
T ss_conf 9735999999999999998762089999999999999999999864-254456777753216778999999999986164
Q ss_pred CCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCEEEEECCCCCCC-------CCCCCCCCCCCCCCCCHHHCCCCCE
Q ss_conf 888999999902999999999189988778625031899314878887-------5677633445310231100268837
Q 001711 836 PIRGGYADVTLDERCAAGYTMMALPVKKLLKLLYPCLIRVDEHLLKPS-------AQLDEYKNIMKRLPLVAESLDSRGL 908 (1021)
Q Consensus 836 ~Lr~g~~~~s~D~R~~~~~~l~s~~~~~~l~~lYPrLy~lh~l~~~~~-------~~~~~~~~lP~~l~LS~~~l~~~gi 908 (1021)
+|+ + .+.+.|||+|++++++++++..++.|+||+||++|++..+.. ..+++.+.+|++++||.+.|+++|+
T Consensus 606 ~l~-~-~~~p~Der~~~~~~l~~~~~~~~~~~iyP~L~~~~~~~~~~g~~~~~~~~~~~~~~~~P~~l~Ls~~~l~~~g~ 683 (810)
T 1pcx_A 606 AFR-S-GIVPSDHRASALNNLESLPLKYLIKNIYPDVYSLHDMADEAGLPVQTEDGEATGTIVLPQPINATSSLFERYGL 683 (810)
T ss_dssp TTC-S-SCCCHHHHHHHHHHHHHSCHHHHHHHHSCEEEECTTCCSSTTSBC--------CCBCCCCBCCSSTTSCCTTCE
T ss_pred HCC-C-CCCCCCHHHHHHHHHHCCCHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCE
T ss_conf 107-9-99891399999999985999999874167789803675012665334455555653568742687998276988
Q ss_pred EEEECCCEEEEEECCCCCHHHHHHHCCCCHHHHH--CCCCCCCC-CHHHHHHHHHHHHHHHHHCC--CCCCEEEEECCCC
Q ss_conf 9997794669983489999999751299335431--01013455-41879999999999997099--9774189940699
Q 001711 909 YIFDDGFRFVLWFGRMLSPDIAMNLLGSEFAAEL--SKVMLREQ-DNEMSRKLLGILKKLREQDP--SYYQLCQLVRQGE 983 (1021)
Q Consensus 909 yLLD~G~~i~lwvG~~v~~~ll~~lFGv~~~~~l--~~~~Lp~~-~n~~s~~l~~iI~~lr~~r~--~~~~l~~vvrqg~ 983 (1021)
||||+|+.+++|+|+++++++++++||++++.++ ++..||++ +|++++++|++|++||++|. .++++ +||||++
T Consensus 684 yLld~G~~i~lwvg~~~~~~l~~~lFg~~~~~~~~~~~~~lp~~~~~~~~~~l~~iI~~lr~~r~~~~~~~l-~ivr~~~ 762 (810)
T 1pcx_A 684 YLIDNGNELFLWMGGDAVPALVFDVFGTQDIFDIPIGKQEIPVVENSEFNQRVRNIINQLRNHDDVITYQSL-YIVRGAS 762 (810)
T ss_dssp EEEECSSEEEEEECTTCCHHHHHHHHSCSCGGGSCCEECCCCCCSSCHHHHHHHHHHHHHHCCSSCCCCCEE-EEEECCC
T ss_pred EEEECCCEEEEEECCCCCHHHHHHHHCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEE-EEEECCC
T ss_conf 999889899999689999799998708984554474335577678985899999999999975788777439-9994688
Q ss_pred CC------------CHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 83------------2599998600456999999899999999999811
Q 001711 984 QP------------REGFLLLANLVEDQIGGSNGYADWIMQIHRQVLQ 1019 (1021)
Q Consensus 984 ~~------------~~e~~f~~~LVED~~~~~~SY~dFL~~lh~~I~~ 1019 (1021)
+. ..|.||.++||||++++++||+||||+|||+|++
T Consensus 763 ~~~~~~~~~~~~~~~~~~~f~~~LvED~~~~~~SY~~fL~~lh~~i~~ 810 (810)
T 1pcx_A 763 LSEPVNHASAREVATLRLWASSTLVEDKILNNESYREFLQIMKARISK 810 (810)
T ss_dssp TTCCCCHHHHHHHHHHHHHHHTTCTTSCBTTBCCHHHHHHHHHHHTCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHCEECCCCCCCCHHHHHHHHHHHHHC
T ss_conf 887433211000255899999748661889989999999999999629
No 6
>1m2o_A SEC23, protein transport protein SEC23, SEC23P; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1m2v_A 2qtv_A*
Probab=1.00 E-value=1 Score=1144.49 Aligned_cols=657 Identities=18% Similarity=0.276 Sum_probs=582.5
Q ss_pred CCCCCCCEECCCCCCCCCHHHHHHCCCCEEEEECCCCCCCCC-----CC---CC--CCEEECCCEEEECCCCEEEECCCC
Q ss_conf 258999210003655899877751377648898138889999-----88---76--553781660696089569975899
Q 001711 310 LNCHSRYLRLTTSAIPNSQSLVSRWHLPLGAVVCPLAEPPEG-----NL---FI--CRTYVNPYVTFTDAGRKWRCNICA 379 (1021)
Q Consensus 310 ~N~~P~yiR~T~~~iP~t~~l~~~~~lPlgivv~Pfa~~~~~-----e~---~r--CrAYiNPf~~f~~~G~~W~CnlC~ 379 (1021)
.||+|+|||+|||+||.|++++++++||||++|+||++..+. +. ++ |||||||||+|+++|++|+||||+
T Consensus 5 ~~~~~~~vR~T~n~~P~t~~~~~~~~lPlg~vi~P~~~~~~~p~v~~~pvRC~~~~CrayiNPf~~~~~~~~~W~C~~C~ 84 (768)
T 1m2o_A 5 TNEDINGVRFTWNVFPSTRSDANSNVVPVGCLYTPLKEYDELNVAPYNPVVCSGPHCKSILNPYCVIDPRNSSWSCPICN 84 (768)
T ss_dssp HHHHHHSEEESBSEEESSHHHHHHTCSCSEEEECTTCCCTTCCEECSCCCBCCSTTTCCBCCTTSCEETTTTEECCTTTC
T ss_pred CCCCCCCEEEEECCCCCCHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCEEEECCCCEEECCCCC
T ss_conf 00686716714136889978972677776899974887888985789997548999871878834880899989843689
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCEEEEEEECCHHHHHHCHHHHHHHHHHHHHHC
Q ss_conf 97899843213458676657978888655542798726665589999976999996516688523799999999999740
Q 001711 380 LLNDVPGDYFAHLDATGRRIDIDQRPELTKGSVEFVAPTEYMVRPPMPPLYFFLIDVSISAIRSGMLEVVAQTIKSCLDE 459 (1021)
Q Consensus 380 ~~N~vP~~Y~~~l~~~g~R~D~~~rPEL~~gsVEfvap~eY~~r~p~pp~yvFvIDvS~~av~sG~l~~~~~sI~~~L~~ 459 (1021)
..|++|.+|+ +++++ +.||||++++|||++|+ ++++||+|+||||+|+++++ ++.+|++|+.+|+.
T Consensus 85 ~~N~~P~~y~-~~~~~------~~~pEL~~~tvEy~~p~----~~~~pp~~vFvIDvs~~~~~---l~~l~~sl~~~L~~ 150 (768)
T 1m2o_A 85 SRNHLPPQYT-NLSQE------NMPLELQSTTIEYITNK----PVTVPPIFFFVVDLTSETEN---LDSLKESIITSLSL 150 (768)
T ss_dssp CCCBCCGGGC-C---C------CCCGGGTCSEEEEECSC----CCCSCCEEEEEEECCSCHHH---HHHHHHHHHHHHHT
T ss_pred CCCCCCHHHC-CCCCC------CCCHHHCCCCEEEECCC----CCCCCCEEEEEEECCCCHHH---HHHHHHHHHHHHHH
T ss_conf 8799986772-57845------57912226978998788----99999889999989868899---99999999999984
Q ss_pred CCCCCCCEEEEEEECCEEEEEECCCCC---------------CCCCEEE--CCC-----C-----CCCCCCC---CCCCC
Q ss_conf 999998439999976759998269999---------------9761431--145-----3-----2235788---99652
Q 001711 460 LPGFPRTQIGFITFDSTIHFYNMKSSL---------------TQPQMMV--ISD-----L-----DDIFVPL---PDDLL 509 (1021)
Q Consensus 460 Lp~~~rt~VgiITFds~Vhfy~l~~~~---------------~~pqmlV--vsD-----l-----dd~f~P~---p~~ll 509 (1021)
||++ ++|||||||++||||+++... +++++++ ++| + +|+|+|+ +++||
T Consensus 151 Lp~~--~~VGlITf~~~V~~y~l~~~~~~~~~V~~g~k~~~~~q~~~~l~~l~~~~~~~~~~~~~~~~f~p~~~~~~~~l 228 (768)
T 1m2o_A 151 LPPN--ALIGLITYGNVVQLHDLSSETIDRCNVFRGDREYQLEALTEMLTGQKPTGPGGAASHLPNAMNKVTPFSLNRFF 228 (768)
T ss_dssp SCTT--CEEEEEEESSEEEECCCSSSSSEEEEEEETTSCCCHHHHHHHHHSCCCC---------------CCSSSGGGGS
T ss_pred CCCC--CEEEEEEECCEEEEEECCCCCCCCEEEECCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEE
T ss_conf 8998--77999997987999978888775125634875466889999975015555677665444445666667720121
Q ss_pred EEHHHHHHHHHHHHHHCCC---CCCCCCCCCCCHHHHHHHHHHHHH----HCCCEEEEEECCCCCCCCCCCCCCCCC--C
Q ss_conf 3026669999999952897---435888766546999999999998----129889999427999885332136886--7
Q 001711 510 VNLSESRSVVDTLLDSLPS---MFQDNMNVESAFGPALKAAFMVMS----RLGGKLLIFQNSLPSLGVGCLKLRGDD--L 580 (1021)
Q Consensus 510 v~l~es~~~I~~lLd~Lp~---~f~~~~~~~~alG~AL~aA~~lL~----~~GGkIivF~s~~Pt~GpG~L~~r~~~--~ 580 (1021)
++++||++.|+++|++|+. ++.+++++++|+|+||++|..+|+ .+||||++|++|+||+|+|+|+.|++. .
T Consensus 229 v~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~~~~G~Al~~A~~ll~~~~~~~GGrI~~F~sg~pt~GpG~l~~r~~~~~~ 308 (768)
T 1m2o_A 229 LPLEQVEFKLNQLLENLSPDQWSVPAGHRPLRATGSALNIASLLLQGCYKNIPARIILFASGPGTVAPGLIVNSELKDPL 308 (768)
T ss_dssp EEHHHHHHHHHHHHHTCCCSCSCCCTTBCCCCCHHHHHHHHHHHHHHHCTTSCCEEEEEESSCCCSSSSCCSCSBTTSCC
T ss_pred EEHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCC
T ss_conf 20899999999999865325566678887762079999999999740147787289999678997788646465443334
Q ss_pred CC-CCCCC-CCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 54-68975-66678888078999999985179189999723897681214421034540899919998752577999999
Q 001711 581 RV-YGTDK-EHSLRIPEDPFYKQMAADLTKFQIAVNVYAFSDKYTDIASLGTLAKYTGGQVYYYPSFQSTTHGERLRHEL 658 (1021)
Q Consensus 581 r~-~gt~k-e~~l~~p~~~fYk~lA~~~~~~~IsVDlF~~s~~~~Diatl~~L~~~TGG~i~~y~~F~~~~d~~~l~~dL 658 (1021)
|. ++++| ++++++++++||++||++|+++||+||+|+++.+|+|+++|+.|++.|||.+++|++|+. ++|..+|
T Consensus 309 rs~~d~~k~~~~~~~~a~~fY~~la~~~~~~gi~VDlF~~~~~~~dla~l~~l~~~TGG~v~~y~~f~~----~~~~~~l 384 (768)
T 1m2o_A 309 RSHHDIDSDHAQHYKKACKFYNQIAQRVAANGHTVDIFAGCYDQIGMSEMKQLTDSTGGVLLLTDAFST----AIFKQSY 384 (768)
T ss_dssp CCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHTCEEEEEEECSSCCSHHHHHHHHHHHTCCEEEESCTTS----HHHHHHH
T ss_pred CCCCCCCCCHHHHCCCHHHHHHHHHHHHHHCCEEEEEEECCCCCCCHHHHHHHHHCCCCEEEECCCCCH----HHHHHHH
T ss_conf 443465432012137158999999999997796899998158766858776676547955997389866----8899999
Q ss_pred HHHCCC------CCCCCEEEEEEECCCEEEEEEECCCC----------------CCCCCCEEECCCCCCCCEEEEEEECC
Q ss_conf 983024------44342489999489917975206854----------------58989336136799980999997304
Q 001711 659 SRDLTR------ETAWEAVMRIRCGKGVRFTNYHGNFM----------------LRSTDLLALPAVDCDKAYAMQLSLEE 716 (1021)
Q Consensus 659 ~r~ltr------~~g~~a~lrVR~S~Gl~I~~~~Gnf~----------------~rs~~~~~l~~id~d~Siav~l~~d~ 716 (1021)
+|.+++ ++||+|+||||||+||+|+++||||+ ++++++|+++++++|+||+|+|++++
T Consensus 385 ~r~l~~~~~~~~~~gf~a~mrVr~S~gl~v~~~~G~~~~~~~~~~~~vsd~~ig~~~t~~~~l~~~~~d~t~~v~f~~~~ 464 (768)
T 1m2o_A 385 LRLFAKDEEGYLKMAFNGNMAVKTSKDLKVQGLIGHASAVKKTDANNISESEIGIGATSTWKMASLSPYHSYAIFFEIAN 464 (768)
T ss_dssp HHTTCBCTTSSBSCEEEEEEEEEECTTEEEEEEESSCEECCSCCCSCBCSSCSSBCSCSEEEEEEECTTCCEEEEEEECC
T ss_pred HHHHHHCCCCCCCEEEEEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCEECCCCCCEEEEECCCCCCEEEEEEEECC
T ss_conf 99984301455545778999999669906987653741466555666575442468875278615798877999999636
Q ss_pred CCC-------------CCCEEEEEEEEEEEECCCCEEEEEEEEEECCCCC-HHHHHHHCCHHHHHHHHHHHHHHHHHCCC
Q ss_conf 547-------------8850589999998834982999999120004689-88999832985899999999999981399
Q 001711 717 TLL-------------TTQTVYFQVALLYTASCGERRIRVHTLAAPVVSN-LSDMYQQADTGAIVSVFSRLAIEKTLSHK 782 (1021)
Q Consensus 717 ~l~-------------~~~~~~iQ~AlLYT~~~GeRrIRV~Tl~lpvts~-l~~vf~s~D~~ai~~~laK~a~~~~l~~~ 782 (1021)
++. +...+|||+|++||+.+|+|||||||++++++++ +.++|+++|+||++++|+|+|++++++++
T Consensus 465 ~~~~~~~~~~~~l~~~~~~~~~iQ~a~lYt~~~G~rriRV~T~~~~~t~~~~~~v~~~~Dqea~~~llar~av~~~~~~~ 544 (768)
T 1m2o_A 465 TAANSNPMMSAPGSADRPHLAYTQFITTYQHSSGTNRIRVTTVANQLLPFGTPAIAASFDQEAAAVLMARIAVHKAETDD 544 (768)
T ss_dssp C-----------------CEEEEEEEEEEEETTTEEEEEEEEEEEEEECTTCHHHHHTBCHHHHHHHHHHHHHHHTTSSC
T ss_pred CCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCEEEEEEEECCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHCCC
T ss_conf 55643333334556567870799999987869998899999523445575589999744999999999999999873198
Q ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 999999999999999---99997654211589973014511350899999962003888999999902999999999189
Q 001711 783 LEDARNAVQLRLVKA---LKEYRNLYAVQHRLGSRMIYPESLKFLPLYCLAICKSTPIRGGYADVTLDERCAAGYTMMAL 859 (1021)
Q Consensus 783 l~d~R~~l~~~lv~i---L~~YRk~~~a~~~~~~qLiLPesLklLPlyi~~LlKS~~Lr~g~~~~s~D~R~~~~~~l~s~ 859 (1021)
+.|+|++|+++++++ |..||| .| +++|+|||+||+||+|+++|+||.+|+. .++++|||+|+++.++++
T Consensus 545 ~~d~r~~l~~~li~l~~~~~~Yrk-~~-----~~~l~lp~~lk~lP~~~~~L~ks~~l~~--~~~spDer~~~~~~l~~~ 616 (768)
T 1m2o_A 545 GADVIRWLDRTLIKLCQKYADYNK-DD-----PQSFRLAPNFSLYPQFTYYLRRSQFLSV--FNNSPDETAFYRHIFTRE 616 (768)
T ss_dssp HHHHHHHHHHHHHHHHHHHSBCCT-TC-----GGGCBCCTTTTHHHHHHHHHHHSTTTCC--TTSCHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHC-CC-----CCCCCCCHHHHHHHHHHHHHHCCCCCCC--CCCCHHHHHHHHHHHHCC
T ss_conf 999999999999999999998746-79-----6213267779999999999856624579--998905999999999739
Q ss_pred CHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCEEEEECCCEEEEEECCCCCHHHHHHHC-CCCH
Q ss_conf 988778625031899314878887567763344531023110026883799977946699834899999997512-9933
Q 001711 860 PVKKLLKLLYPCLIRVDEHLLKPSAQLDEYKNIMKRLPLVAESLDSRGLYIFDDGFRFVLWFGRMLSPDIAMNLL-GSEF 938 (1021)
Q Consensus 860 ~~~~~l~~lYPrLy~lh~l~~~~~~~~~~~~~lP~~l~LS~~~l~~~giyLLD~G~~i~lwvG~~v~~~ll~~lF-Gv~~ 938 (1021)
++..++.|+||+||++|.. + .|++++||.++|+++||||||+|+.++||+|+.+++| +++.| +++.
T Consensus 617 ~~~~~l~~iyP~L~~~~~~---------~---~P~~v~Ls~~~l~~~gi~LLD~g~~i~i~~G~~v~~~-~~~~~~~~~~ 683 (768)
T 1m2o_A 617 DTTNSLIMIQPTLTSFSME---------D---DPQPVLLDSISVKPNTILLLDTFFFILIYHGEQIAQW-RKAGYQDDPQ 683 (768)
T ss_dssp CHHHHHHHHSCEEEEECSS---------S---CCEECCSBGGGCCTTCEEEEECSSEEEEEECHHHHHH-HHHTGGGSTT
T ss_pred CHHHHHHHHCCEEEEECCC---------C---CCCCEECCHHHCCCCCEEEEECCCEEEEEECCCCHHH-HHCCCCCCCH
T ss_conf 9999988657848985488---------9---7763648699857898899988989999988752178-7465678833
Q ss_pred HHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHCCCCCCC-------------CCCC
Q ss_conf 543101013455418799999999999970999774189940699832599998600456999-------------9998
Q 001711 939 AAELSKVMLREQDNEMSRKLLGILKKLREQDPSYYQLCQLVRQGEQPREGFLLLANLVEDQIG-------------GSNG 1005 (1021)
Q Consensus 939 ~~~l~~~~Lp~~~n~~s~~l~~iI~~lr~~r~~~~~l~~vvrqg~~~~~e~~f~~~LVED~~~-------------~~~S 1005 (1021)
.+++. ++.+..+..+++|.+.|...+++ ++++||.++ +.+|.++|+||.+. +++|
T Consensus 684 ~~~~~---------~ll~~p~~~a~~i~~~R~p~Pr~-i~~~~~~sq--arfl~s~L~p~~~~~~~~~~~~~~i~tdd~S 751 (768)
T 1m2o_A 684 YADFK---------ALLEEPKLEAAELLVDRFPLPRF-IDTEAGGSQ--ARFLLSKLNPSDNYQDMARGGSTIVLTDDVS 751 (768)
T ss_dssp CHHHH---------HHHHHHHHHHHHHHHTCSSCCEE-EEEETTCGG--GHHHHTTSBCC-----------CCCCCCSCC
T ss_pred HHHHH---------HHHHHHHHHHHHHHHCCCCCCEE-EEECCCCCH--HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 66689---------88665699999999638898659-998899868--8999987487765555556776310037767
Q ss_pred HHHHHHHHHHHHHC
Q ss_conf 99999999999811
Q 001711 1006 YADWIMQIHRQVLQ 1019 (1021)
Q Consensus 1006 Y~dFL~~lh~~I~~ 1019 (1021)
|.+||+||||+|++
T Consensus 752 ~~~f~~~L~k~~v~ 765 (768)
T 1m2o_A 752 LQNFMTHLQQVAVS 765 (768)
T ss_dssp HHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHC
T ss_conf 99999999999753
No 7
>2nut_A Protein transport protein SEC23A; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_A 3egd_A 3eg9_A 3egx_A 3efo_A
Probab=1.00 E-value=1 Score=1122.85 Aligned_cols=660 Identities=17% Similarity=0.262 Sum_probs=583.2
Q ss_pred CCCCCCEECCCCCCCCCHHHHHHCCCCEEEEECCCCCCCCCC-----C---CC--CCEEECCCEEEECCCCEEEECCCCC
Q ss_conf 589992100036558998777513776488981388899998-----8---76--5537816606960895699758999
Q 001711 311 NCHSRYLRLTTSAIPNSQSLVSRWHLPLGAVVCPLAEPPEGN-----L---FI--CRTYVNPYVTFTDAGRKWRCNICAL 380 (1021)
Q Consensus 311 N~~P~yiR~T~~~iP~t~~l~~~~~lPlgivv~Pfa~~~~~e-----~---~r--CrAYiNPf~~f~~~G~~W~CnlC~~ 380 (1021)
||+|+|||+|||+||.|++++++++||||++|+||++..+.. . +| |||||||||+|+++|++|+||||+.
T Consensus 15 n~~~~~vR~T~n~~P~t~~~~~~~~lPlg~vi~P~~~~~~~p~v~~~pvRC~~~~CrayiNPf~~~~~~~~~W~C~~C~~ 94 (769)
T 2nut_A 15 NEERDGVRFSWNVWPSSRLEATRMVVPVAALFTPLKERPDLPPIQYEPVLCSRTTCRAVLNPLCQVDYRAKLWACNFCYQ 94 (769)
T ss_dssp HHHHHSEEESBSSBCSSHHHHTTCSSCCEEEECTTCCCSCCCCBCSCCCBCSSTTCCCBCCTTSEEETTTTEEECSSSCC
T ss_pred CCCCCCCCCEECCCCCCHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCEEEECCCCEEECCCCCC
T ss_conf 68988420530467898688732567769999618888889858889976799998739788459937999799138998
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCEEEECCCCCCCCCCCCCEEEEEEECCHHHHHHCHHHHHHHHHHHHHH
Q ss_conf 789984321345867665797888865--554279872666558999997699999651668852379999999999974
Q 001711 381 LNDVPGDYFAHLDATGRRIDIDQRPEL--TKGSVEFVAPTEYMVRPPMPPLYFFLIDVSISAIRSGMLEVVAQTIKSCLD 458 (1021)
Q Consensus 381 ~N~vP~~Y~~~l~~~g~R~D~~~rPEL--~~gsVEfvap~eY~~r~p~pp~yvFvIDvS~~av~sG~l~~~~~sI~~~L~ 458 (1021)
.|++|.+|+ ++++. ++|||| ++++|||++|++| +++|+|+||||||.++++ ++.++++|+.+|+
T Consensus 95 ~N~~P~~Y~-~~~~~------~~~pEL~p~~~tvEy~~~~~~----p~pp~~vFvIDvS~~a~~---l~~l~~si~~~L~ 160 (769)
T 2nut_A 95 RNQFPPSYA-GISEL------NQPAELLPQFSSIEYVVLRGP----QMPLIFLYVVDTCMEDED---LQALKESMQMSLS 160 (769)
T ss_dssp EEECCGGGT-TCBTT------BCCGGGSGGGSSEEEEECSSC----CCCCEEEEEEECCSCHHH---HHHHHHHHHHHHT
T ss_pred CCCCCHHHC-CCCCC------CCCHHHCCCCCCEEEECCCCC----CCCCEEEEEEECCCCHHH---HHHHHHHHHHHHH
T ss_conf 789986772-57745------689656378986798736888----999789999988755889---9999999999998
Q ss_pred CCCCCCCCEEEEEEECCEEEEEECCCCC---------------CCCC-EEECCC----C-----CCCC-CCCCCCCCEEH
Q ss_conf 0999998439999976759998269999---------------9761-431145----3-----2235-78899652302
Q 001711 459 ELPGFPRTQIGFITFDSTIHFYNMKSSL---------------TQPQ-MMVISD----L-----DDIF-VPLPDDLLVNL 512 (1021)
Q Consensus 459 ~Lp~~~rt~VgiITFds~Vhfy~l~~~~---------------~~pq-mlVvsD----l-----dd~f-~P~p~~llv~l 512 (1021)
.||++ ++|||||||++||||+++.++ ++++ |++++| + +|+| +|. ++||+++
T Consensus 161 ~Lp~~--~~VGlITf~~~v~~y~l~~~~~~~~~vf~G~k~~~~~q~~~ml~v~d~~~~~~~~~~~~~f~~p~-~~~lv~~ 237 (769)
T 2nut_A 161 LLPPT--ALVGLITFGRMVQVHELGCEGISKSYVFRGTKDLSAKQLQEMLGLSKVPVTQATRGPQVQQPPPS-NRFLQPV 237 (769)
T ss_dssp TSCTT--CEEEEEEESSEEEEEESSCCSSCEEEEEETTSCCCSHHHHHHHC-------------------CC-CSSSEEH
T ss_pred HCCCC--CEEEEEEECCEEEEEECCCCCCCCCEEECCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC-CCEEEEH
T ss_conf 48998--46999996877999967888776302405876565778999858787665544555565677761-0102218
Q ss_pred HHHHHHHHHHHHHCCC---CCCCCCCCCCCHHHHHHHHHHHHH----HCCCEEEEEECCCCCCCCCCCCCCCCC--CCC-
Q ss_conf 6669999999952897---435888766546999999999998----129889999427999885332136886--754-
Q 001711 513 SESRSVVDTLLDSLPS---MFQDNMNVESAFGPALKAAFMVMS----RLGGKLLIFQNSLPSLGVGCLKLRGDD--LRV- 582 (1021)
Q Consensus 513 ~es~~~I~~lLd~Lp~---~f~~~~~~~~alG~AL~aA~~lL~----~~GGkIivF~s~~Pt~GpG~L~~r~~~--~r~- 582 (1021)
+|+++.|+++||+|+. ++.++++.++|+|+||++|..+|+ .+||||++|++|+||.|+|+|+.|++. .|.
T Consensus 238 ~e~~~~i~~lLe~L~~~~~~~~~~~~~~~a~G~Al~~A~~lL~~~~~~~GGrI~~F~sg~pt~GpG~l~~r~~~~~~rs~ 317 (769)
T 2nut_A 238 QKIDMNLTDLLGELQRDPWPVPQGKRPLRSSGVALSIAVGLLECTFPNTGARIMMFIGGPATQGPGMVVGDELKTPIRSW 317 (769)
T ss_dssp HHHHHHHHHHHHHCCCCSSCCCTTBCCCCCHHHHHHHHHHHHHHHSCSSCCEEEEEESSCCCSSSSCCSCSBTTSCCCCH
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 99999999999865324456567888763068999999999741136788589999678997788777574432223443
Q ss_pred CCCCCC-CCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 689756-6678888078999999985179189999723897681214421034540899919998752577999999983
Q 001711 583 YGTDKE-HSLRIPEDPFYKQMAADLTKFQIAVNVYAFSDKYTDIASLGTLAKYTGGQVYYYPSFQSTTHGERLRHELSRD 661 (1021)
Q Consensus 583 ~gt~ke-~~l~~p~~~fYk~lA~~~~~~~IsVDlF~~s~~~~Diatl~~L~~~TGG~i~~y~~F~~~~d~~~l~~dL~r~ 661 (1021)
++++|| +++++++++||+++|.+|+++||+||+|+++.+|+|+++|+.|++.|||.+++|++|+.+++.+.|.++|.|.
T Consensus 318 ~d~~ke~~~~~~~a~~fY~~la~~~~~~gi~VDlF~~~~~~vdla~l~~l~~~TGG~~~~~~~F~~~~~~~~l~~~~~~~ 397 (769)
T 2nut_A 318 HDIDKDNAKYVKKGTKHFEALANRAATTGHVIDIYACALDQTGLLEMKCCPNLTGGYMVMGDSFNTSLFKQTFQRVFTKD 397 (769)
T ss_dssp HHHHTTCCTTHHHHHHHHHHHHHHHHHHTCEEEEEEECSSCCCHHHHTHHHHHSSCCEEEESCSSSHHHHHHHHHTTCBC
T ss_pred CCCCCCHHHHCCCHHHHHHHHHHHHHHCCEEEEEEECCCCCCCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHH
T ss_conf 56642123432505899999999999779699999626776680888777663795599838984466899999998653
Q ss_pred CCC--CCCCCEEEEEEECCCEEEEEEECCCC---------------CCCCCCEEECCCCCCCCEEEEEEECCC----CCC
Q ss_conf 024--44342489999489917975206854---------------589893361367999809999973045----478
Q 001711 662 LTR--ETAWEAVMRIRCGKGVRFTNYHGNFM---------------LRSTDLLALPAVDCDKAYAMQLSLEET----LLT 720 (1021)
Q Consensus 662 ltr--~~g~~a~lrVR~S~Gl~I~~~~Gnf~---------------~rs~~~~~l~~id~d~Siav~l~~d~~----l~~ 720 (1021)
+++ ++||+|+||||||+||+|+++||||+ ++++++|+++++++|+||+|+|+++++ +.+
T Consensus 398 ~~~~l~~gf~a~mrVr~S~gl~v~~~~G~~~~~~~~~~~vsd~~~g~~~t~~~~l~~~~~d~s~~v~f~~~~~~~~~l~~ 477 (769)
T 2nut_A 398 MHGQFKMGFGGTLEIKTSREIKISGAIGPCVSLNSKGPCVSENEIGTGGTCQWKICGLSPTTTLAIYFEVVNQHNAPIPQ 477 (769)
T ss_dssp TTSCBSCEEEEEEEEEECTTEEEEEEESSCEECCCCCTTBCSSCCSBCSCSEEEEEEECTTCCEEEEEEEC---------
T ss_pred CCCCCCEEEEEEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCEECCCCCCEEEEECCCCCCEEEEEEEECCCCCCCCCC
T ss_conf 04564357779999996698279864436303565567656412136787507840679887799999964755666678
Q ss_pred CCEEEEEEEEEEEECCCCEEEEEEEEEECCCCCH---HHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 8505899999988349829999991200046898---8999832985899999999999981399999999999999999
Q 001711 721 TQTVYFQVALLYTASCGERRIRVHTLAAPVVSNL---SDMYQQADTGAIVSVFSRLAIEKTLSHKLEDARNAVQLRLVKA 797 (1021)
Q Consensus 721 ~~~~~iQ~AlLYT~~~GeRrIRV~Tl~lpvts~l---~~vf~s~D~~ai~~~laK~a~~~~l~~~l~d~R~~l~~~lv~i 797 (1021)
...+|||+|++||+.+|+|||||||+++++++++ .++|+++|+||++++|+|+|+++++++++.|+|++++++++++
T Consensus 478 ~~~~~~Q~a~lYt~~~G~rRiRV~T~~~~~t~~~~~~~~v~~~~Dqea~~~llar~a~~~~~~~~~~d~~~~ld~~li~l 557 (769)
T 2nut_A 478 GGRGAIQFVTQYQHSSGQRRIRVTTIARNWADAQTQIQNIAASFDQEAAAILMARLAIYRAETEEGPDVLRWLDRQLIRL 557 (769)
T ss_dssp -CCEEEEEEEEEEETTSCEEEEEEEEEECBCCGGGHHHHHHHTBCHHHHHHHHHHHHHHHHTTC---CHHHHHHHHHHHH
T ss_pred CCEEEEEEEEEEECCCCCEEEEEEEECCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 87289999999997999889999943211357754379999754999999999999998751287899999999999999
Q ss_pred ---HHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCEEE
Q ss_conf ---99997654211589973014511350899999962003888999999902999999999189988778625031899
Q 001711 798 ---LKEYRNLYAVQHRLGSRMIYPESLKFLPLYCLAICKSTPIRGGYADVTLDERCAAGYTMMALPVKKLLKLLYPCLIR 874 (1021)
Q Consensus 798 ---L~~YRk~~~a~~~~~~qLiLPesLklLPlyi~~LlKS~~Lr~g~~~~s~D~R~~~~~~l~s~~~~~~l~~lYPrLy~ 874 (1021)
|.+||| .| .++|+|||+||+||+|+++|+||.+|+. .++++|||+|++++++++++..++.|+||+||+
T Consensus 558 ~~~~~~Yrk-~~-----~~sl~lp~~lkllP~~~~~L~ks~~l~~--~~~spDer~~~~~~l~~~~~~~~~~~iyP~L~~ 629 (769)
T 2nut_A 558 CQKFGEYHK-DD-----PSSFRFSETFSLYPQFMFHLRRSSFLQV--FNNSPDESSYYRHHFMRQDLTQSLIMIQPILYA 629 (769)
T ss_dssp HHHHCBCCT-TC-----GGGCBCCTTTTTHHHHHHHHHHSTTTCC--TTSCHHHHHHHHHHHTTCCHHHHHHHHSCEEEE
T ss_pred HHHHHHHHC-CC-----CCCCCCCHHHHHHHHHHHHHHCCCCCCC--CCCCCCHHHHHHHHHHCCCHHHHHHHHCCEEEE
T ss_conf 999999857-69-----6333066779999999999856410278--998822999999999759999998754677886
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCEEEEECCCEEEEEECCCCCHHHHHHHCCCCHHHHHCCCCCCCCCHHH
Q ss_conf 31487888756776334453102311002688379997794669983489999999751299335431010134554187
Q 001711 875 VDEHLLKPSAQLDEYKNIMKRLPLVAESLDSRGLYIFDDGFRFVLWFGRMLSPDIAMNLLGSEFAAELSKVMLREQDNEM 954 (1021)
Q Consensus 875 lh~l~~~~~~~~~~~~~lP~~l~LS~~~l~~~giyLLD~G~~i~lwvG~~v~~~ll~~lFGv~~~~~l~~~~Lp~~~n~~ 954 (1021)
+|.. + .|++++||.++|+++||||||+|+.++||+|+.+++|+...+.+.+..+.+ .++
T Consensus 630 ~~~~--------~----~P~~v~ls~~~l~~~gi~LLD~g~~i~i~~G~~v~~w~~~~~~~~p~~~~~---------~~~ 688 (769)
T 2nut_A 630 YSFS--------G----PPEPVLLDSSSILADRILLMDTFFQILIYHGETIAQWRKSGYQDMPEYENF---------RHL 688 (769)
T ss_dssp ECSS--------S----SCEECCSSGGGCCTTCEEEEECSSEEEEEECHHHHHHHHHTTTTSGGGHHH---------HHH
T ss_pred CCCC--------C----CCCCEECCHHHCCCCCEEEEECCCEEEEEECCCCHHHHHCCCCCCCHHHHH---------HHH
T ss_conf 3688--------9----897541879981679789997898999997775267872799888215669---------999
Q ss_pred HHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHCCCCCC----------------CCCCCHHHHHHHHHHHHH
Q ss_conf 9999999999997099977418994069983259999860045699----------------999989999999999981
Q 001711 955 SRKLLGILKKLREQDPSYYQLCQLVRQGEQPREGFLLLANLVEDQI----------------GGSNGYADWIMQIHRQVL 1018 (1021)
Q Consensus 955 s~~l~~iI~~lr~~r~~~~~l~~vvrqg~~~~~e~~f~~~LVED~~----------------~~~~SY~dFL~~lh~~I~ 1018 (1021)
.+..++.+++|+++|.+++++ ++++||.++ .+++.++|..-.+ .++.||..|+.||+|.+.
T Consensus 689 l~~p~~~a~~i~~~R~p~Pr~-i~~~~g~sq--aRfl~sklnps~~~~~~~~~~~~~~~~~~tddvsl~~f~~~l~~~~v 765 (769)
T 2nut_A 689 LQAPVDDAQEILHSRFPMPRY-IDTEHGGSQ--ARFLLSKVNPSQTHNNMYAWGQESGAPILTDDVSLQVFMDHLKKLAV 765 (769)
T ss_dssp HHHHHHHHHHHHHHSSSCCEE-EEEETTCST--THHHHHHCC----------------------CCSHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHCCCCCCEE-EEECCCCCH--HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 986999999998548998769-997589868--99998763875346677767776775303363579999999999850
Q ss_pred C
Q ss_conf 1
Q 001711 1019 Q 1019 (1021)
Q Consensus 1019 ~ 1019 (1021)
+
T Consensus 766 ~ 766 (769)
T 2nut_A 766 S 766 (769)
T ss_dssp S
T ss_pred C
T ss_conf 5
No 8
>2yrc_A Protein transport protein SEC23A; zinc binding, copii, coat protein complex-II, endoplasmic reticulum, golgi, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yrd_A
Probab=1.00 E-value=1 Score=92.39 Aligned_cols=39 Identities=28% Similarity=0.663 Sum_probs=35.9
Q ss_pred CC--CCEEECCCEEEECCCCEEEECCCCCCCCCCCCCCCCCC
Q ss_conf 76--55378166069608956997589997899843213458
Q 001711 354 FI--CRTYVNPYVTFTDAGRKWRCNICALLNDVPGDYFAHLD 393 (1021)
Q Consensus 354 ~r--CrAYiNPf~~f~~~G~~W~CnlC~~~N~vP~~Y~~~l~ 393 (1021)
+| |||||||||+|+++|++|+||||+..|++|.+|+. ++
T Consensus 13 ~r~~CraylNP~~~~~~~~~~W~C~~C~~~N~~P~~Y~~-is 53 (59)
T 2yrc_A 13 SRTTCRAVLNPLCQVDYRAKLWACNFCYQRNQFPPSYAG-IS 53 (59)
T ss_dssp SCTTTCCBCCTTSEEEGGGTEEECSSSCCEEECCSCCSS-CH
T ss_pred CCCCCCEEECCCEEEECCCCEEECCCCCCCCCCCHHHHC-CC
T ss_conf 798987297996598789999984168985789978805-67
No 9
>4fx5_A VON willebrand factor type A; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, blood clotting; HET: MSE; 1.73A {Catenulispora acidiphila}
Probab=1.00 E-value=1 Score=92.13 Aligned_cols=343 Identities=13% Similarity=0.071 Sum_probs=203.6
Q ss_pred CCCEEEEEEECCHHHHH-HCHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEECCCCCCCCCEEECCCCCCCCCCC
Q ss_conf 99769999965166885-23799999999999740999998439999976759998269999976143114532235788
Q 001711 426 MPPLYFFLIDVSISAIR-SGMLEVVAQTIKSCLDELPGFPRTQIGFITFDSTIHFYNMKSSLTQPQMMVISDLDDIFVPL 504 (1021)
Q Consensus 426 ~pp~yvFvIDvS~~av~-sG~l~~~~~sI~~~L~~Lp~~~rt~VgiITFds~Vhfy~l~~~~~~pqmlVvsDldd~f~P~ 504 (1021)
.+..++||||+|.++-. ..-++.++++++..++.|..+ .+|+||+|++..+..- |+
T Consensus 76 ~~~dvv~VLD~SGSM~~~~~rl~~ak~a~~~ll~~L~~~--drv~lV~Fs~~a~~~~---------------------p~ 132 (464)
T 4fx5_A 76 SENVEVIIIDCSGSMDYPRTKMMAAKEATKVAIDTLTDG--AFFAVVAGTEGARVVY---------------------PT 132 (464)
T ss_dssp CCEEEEEEEECCGGGGTTTHHHHHHHHHHHHHHHHSCTT--CEEEEEEESSSEEEEE---------------------SS
T ss_pred CCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCC--CEEEEEEECCCEEEEE---------------------CC
T ss_conf 970399999867114889846999999999999728999--8899999838607985---------------------69
Q ss_pred CCCCCEEHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC---CEEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 996523026669999999952897435888766546999999999998129---88999942799988533213688675
Q 001711 505 PDDLLVNLSESRSVVDTLLDSLPSMFQDNMNVESAFGPALKAAFMVMSRLG---GKLLIFQNSLPSLGVGCLKLRGDDLR 581 (1021)
Q Consensus 505 p~~llv~l~es~~~I~~lLd~Lp~~f~~~~~~~~alG~AL~aA~~lL~~~G---GkIivF~s~~Pt~GpG~L~~r~~~~r 581 (1021)
..++...-.+.++.+...|+.|.. ..++.++.||+.|..+|+... ..|++++.|.++.+.
T Consensus 133 t~~l~~~~~~~~~~l~~~I~~L~~------~GgT~l~~aL~~A~~~l~~~~~~~~~IILLTDG~~~~~~----------- 195 (464)
T 4fx5_A 133 GGQLLRADYQSRAAAKEAVGRLHA------NGGTAMGRWLAQAGRIFDTAPSAIKHAILLTDGKDESET----------- 195 (464)
T ss_dssp SSSCEECSHHHHHHHHHHHHTCCC------CSCCCHHHHHHHHHHHHTTCTTSEEEEEEEESSCCTTSC-----------
T ss_pred CCCCCCCCHHHHHHHHHHHHCCCC------CCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCC-----------
T ss_conf 754564887789999999970899------999968999999999875289877889999589999998-----------
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 46897566678888078999999985179189999723897681214421034540899919998752577999999983
Q 001711 582 VYGTDKEHSLRIPEDPFYKQMAADLTKFQIAVNVYAFSDKYTDIASLGTLAKYTGGQVYYYPSFQSTTHGERLRHELSRD 661 (1021)
Q Consensus 582 ~~gt~ke~~l~~p~~~fYk~lA~~~~~~~IsVDlF~~s~~~~Diatl~~L~~~TGG~i~~y~~F~~~~d~~~l~~dL~r~ 661 (1021)
..-... +.+..+.+|.|+.|.++. ..|...|..++..|||..++..++.. -.....++...
T Consensus 196 --------------~~~l~~-~~~a~~~~i~i~tiGiG~-~~d~~~L~~IA~~tgG~~~~v~d~~~---L~~~f~~i~~~ 256 (464)
T 4fx5_A 196 --------------PADLAR-AIQSSIGNFTADCRGIGE-DWEPKELRKIADALLGTVGIIRDPAT---LAEDFREMTAK 256 (464)
T ss_dssp --------------HHHHHH-HHHHHTTTCEEEEEEESS-SSCHHHHHHHHHHTTCCEEEESSGGG---HHHHHHHHHHH
T ss_pred --------------HHHHHH-HHHHHCCCCEEEEEEECC-CCCHHHHHHHHHHCCCEEEECCCHHH---HHHHHHHHHHH
T ss_conf --------------499999-999843897599999698-52899999999817987998599899---99999999998
Q ss_pred CCCCCCCCEEEEEEECCCEEEEEEECC------CC-CC------CCCCEEECCCCCCCC--EEEEEEECCCCCCCCEEE-
Q ss_conf 024443424899994899179752068------54-58------989336136799980--999997304547885058-
Q 001711 662 LTRETAWEAVMRIRCGKGVRFTNYHGN------FM-LR------STDLLALPAVDCDKA--YAMQLSLEETLLTTQTVY- 725 (1021)
Q Consensus 662 ltr~~g~~a~lrVR~S~Gl~I~~~~Gn------f~-~r------s~~~~~l~~id~d~S--iav~l~~d~~l~~~~~~~- 725 (1021)
+.....-++.+++++..|+.+..+..- .. .+ ....+.++.+ .+.+ |.+++.+...- .+....
T Consensus 257 ~~s~~~~dv~l~l~~~~g~~v~~v~~v~P~~~~l~~~~~~~~~~~~~~v~lG~l-~~e~r~~lv~l~v~~~~-~g~~~~~ 334 (464)
T 4fx5_A 257 SMGKEVADVALRLWAPKGATIRYVKQVSPNLADLSGMRVPGDNPLTGDYPTGAW-GAESREYHICVEVEPGN-IGQEKLA 334 (464)
T ss_dssp HHTCCEEEEEEEEECCTTCEEEEEEEEESBCEECGGGCEECSSTTEEEEEEEEE-SSEEEEEEEEEECCCCC-TTCEEEE
T ss_pred HHCHHEEEEEEEEEECCCCEEEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCC-CCCEEEEEEEEECCCCC-CCCEEEE
T ss_conf 615104326999994899179999863664344676555678883789989767-78728999999847889-8850588
Q ss_pred EEEEEEEEECCCCEEEEEEEEEECCCCCH-------HHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-
Q ss_conf 99999988349829999991200046898-------8999832985899999999999981399999999999999999-
Q 001711 726 FQVALLYTASCGERRIRVHTLAAPVVSNL-------SDMYQQADTGAIVSVFSRLAIEKTLSHKLEDARNAVQLRLVKA- 797 (1021)
Q Consensus 726 iQ~AlLYT~~~GeRrIRV~Tl~lpvts~l-------~~vf~s~D~~ai~~~laK~a~~~~l~~~l~d~R~~l~~~lv~i- 797 (1021)
.++.+.|.+..|++.+.=..+.+.++.+. .+|.+...+.. ++-..+++......+....+...|..-....
T Consensus 335 ~~v~~~y~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~V~~~~~~~~-~a~~~~~a~~~~~~gd~~~A~~~L~~A~~~~~ 413 (464)
T 4fx5_A 335 GRVQLVAKDAGGATLLGEGKIRAVWTEDTDLSTRINGRVAHYTGQAE-MAAAIQEGLDAQAAGDLDTATARLGRAMDLAV 413 (464)
T ss_dssp EEEEEEEEETTEEEEEEEEEEEEEECSCHHHHSCCCHHHHHHHHHHH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred EEEEEEECCCCCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 99999971777664025663599997662235789989999999999-99999999999986999999999999999999
Q ss_pred -------HHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf -------9999765421158997301451135089999996
Q 001711 798 -------LKEYRNLYAVQHRLGSRMIYPESLKFLPLYCLAI 831 (1021)
Q Consensus 798 -------L~~YRk~~~a~~~~~~qLiLPesLklLPlyi~~L 831 (1021)
+...+++.-. ....|...|-+..+-+-..++..
T Consensus 414 ~~g~~~~~~~l~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~ 453 (464)
T 4fx5_A 414 ESGHEDTVKMLRKVTEV-DPATSKVRAKAKVDKGDAMELDV 453 (464)
T ss_dssp HHTCHHHHHHHHTTEEE-CTTTCCEEECSSCCHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHEEE-CCCCCEEEECCCCCCCCHHHHHC
T ss_conf 71889999999864874-47898088646776011032003
No 10
>2x31_A Magnesium-chelatase 60 kDa subunit; ligase, bacteriochlorophyll biosynthesis, photosynthesis; 7.50A {Rhodobacter capsulatus}
Probab=1.00 E-value=1 Score=73.71 Aligned_cols=178 Identities=15% Similarity=0.210 Sum_probs=102.9
Q ss_pred CCCEEEEEEECCHHHHHHCHHHHHHHHHHHHHHCC-CCCCCCEEEEEEECCEEEEEECCCCCCCCCEEECCCCCCCCCCC
Q ss_conf 99769999965166885237999999999997409-99998439999976759998269999976143114532235788
Q 001711 426 MPPLYFFLIDVSISAIRSGMLEVVAQTIKSCLDEL-PGFPRTQIGFITFDSTIHFYNMKSSLTQPQMMVISDLDDIFVPL 504 (1021)
Q Consensus 426 ~pp~yvFvIDvS~~av~sG~l~~~~~sI~~~L~~L-p~~~rt~VgiITFds~Vhfy~l~~~~~~pqmlVvsDldd~f~P~ 504 (1021)
.+..++||||+|.+.-. .-++.+++.++..++.+ .. +.+||+|+|++... +..+|.
T Consensus 4 ~~~~vv~vlD~SgSM~~-~~~~~~k~~~~~~~~~~~~~--~~~v~lv~f~~~~~--------------------~~~~~~ 60 (189)
T 2x31_A 4 SDRVLIFAVDASGSAAV-ARLSEAKGAVELLLGRAYAA--RDHVSLITFRGTAA--------------------QVLLQP 60 (189)
T ss_dssp SCCEEEEEEECCTTSCC---CHHHHHHHHHHHHHSCTT--TSCCCEEEESBSCC--------------------CBCTTT
T ss_pred CCEEEEEEEECCCCCCC-HHHHHHHHHHHHHHHHHCCC--CCEEEEEEECCCCC--------------------EEECCC
T ss_conf 87179999978889886-69999999999999973078--85799999879984--------------------076689
Q ss_pred CCCCCEEHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHC-----CCEEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 99652302666999999995289743588876654699999999999812-----9889999427999885332136886
Q 001711 505 PDDLLVNLSESRSVVDTLLDSLPSMFQDNMNVESAFGPALKAAFMVMSRL-----GGKLLIFQNSLPSLGVGCLKLRGDD 579 (1021)
Q Consensus 505 p~~llv~l~es~~~I~~lLd~Lp~~f~~~~~~~~alG~AL~aA~~lL~~~-----GGkIivF~s~~Pt~GpG~L~~r~~~ 579 (1021)
...++.+...|+.+.. ..++.++.||+.|...++.. ...|++++.|.++.|...-..+++
T Consensus 61 --------~~~~~~~~~~i~~l~~------~g~T~~~~al~~a~~~l~~~~~~~~~~~ivliTDG~~~~~~~~~~~~~~- 125 (189)
T 2x31_A 61 --------SRSLTQTKRQLQGLPG------GGGTPLASGMEMAMVTAKQARSRGMTPTIALLTDGRGNIALDGTANREL- 125 (189)
T ss_dssp --------CSCHHHHHHHHHHCCC------CBCCCCHHHHHHHHHHHHTCTTTCSSEEEEECCBSCCSSCCTHHHHHGG-
T ss_pred --------CCCHHHHHHHHHCCCC------CCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCCC-
T ss_conf --------8999999999966999------9998889999999999973457899239999778998778776555564-
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 75468975666788880789999999851791899997238976812144210345408999199987525779999999
Q 001711 580 LRVYGTDKEHSLRIPEDPFYKQMAADLTKFQIAVNVYAFSDKYTDIASLGTLAKYTGGQVYYYPSFQSTTHGERLRHELS 659 (1021)
Q Consensus 580 ~r~~gt~ke~~l~~p~~~fYk~lA~~~~~~~IsVDlF~~s~~~~Diatl~~L~~~TGG~i~~y~~F~~~~d~~~l~~dL~ 659 (1021)
+..+ + .+++.++.+.+|.|..+.++.. +...|..++..|||..++.++ .+.+.|...+.
T Consensus 126 ---~~~~----~--------~~~~~~~~~~gi~v~~ig~g~~--~~~~L~~iA~~~~G~~~~~~~----~~~~~~~~~~~ 184 (189)
T 2x31_A 126 ---AGEQ----A--------TKVARAIRASGMPAVIIDTAMR--PNPALVDLARTMDAHYIALPR----ATAHKMADVLG 184 (189)
T ss_dssp ---GTCC----C--------EEEEECTGGGGSCCTHHHHHHS--SCSSSCSTTTEEEESSTTTHH----HHHHHHHHHHH
T ss_pred ---HHHH----H--------HHHHHHHHHCCCEEEEEECCCC--CHHHHHHHHHHCCCEEEECCC----CCHHHHHHHHH
T ss_conf ---5699----9--------9999999976985999933788--779999999713976997798----66488999998
Q ss_pred HHC
Q ss_conf 830
Q 001711 660 RDL 662 (1021)
Q Consensus 660 r~l 662 (1021)
+.+
T Consensus 185 ~~~ 187 (189)
T 2x31_A 185 AAL 187 (189)
T ss_dssp HCC
T ss_pred HHH
T ss_conf 863
Done!