Query 001712
Match_columns 1021
No_of_seqs 209 out of 288
Neff 5.0
Searched_HMMs 46136
Date Fri Mar 29 07:31:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001712.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001712hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03097 FHY3 Protein FAR-RED 100.0 4.6E-42 1E-46 416.4 34.6 477 69-605 70-604 (846)
2 PF10551 MULE: MULE transposas 99.6 3.2E-15 6.9E-20 136.9 8.8 89 300-394 1-93 (93)
3 PF00872 Transposase_mut: Tran 99.1 2.5E-11 5.4E-16 139.2 1.9 244 181-488 98-351 (381)
4 COG3328 Transposase and inacti 97.5 0.00053 1.2E-08 79.3 11.7 177 294-487 146-329 (379)
5 PF03101 FAR1: FAR1 DNA-bindin 97.1 0.0013 2.8E-08 60.5 6.9 70 78-158 19-88 (91)
6 PF15299 ALS2CR8: Amyotrophic 96.0 0.041 8.8E-07 59.7 10.6 138 89-237 34-221 (225)
7 smart00575 ZnF_PMZ plant mutat 94.5 0.022 4.7E-07 42.4 1.7 24 582-605 2-26 (28)
8 PF04434 SWIM: SWIM zinc finge 93.4 0.071 1.5E-06 42.2 2.9 26 578-603 12-38 (40)
9 PF01610 DDE_Tnp_ISL3: Transpo 92.5 0.2 4.2E-06 54.2 5.6 93 297-397 2-96 (249)
10 PF03050 DDE_Tnp_IS66: Transpo 86.6 0.91 2E-05 49.9 5.0 82 295-398 69-155 (271)
11 PF13610 DDE_Tnp_IS240: DDE do 75.6 0.78 1.7E-05 46.0 -0.4 77 295-380 3-80 (140)
12 PHA02517 putative transposase 73.8 19 0.0004 39.7 9.7 70 295-370 112-181 (277)
13 PF06782 UPF0236: Uncharacteri 69.8 2.6E+02 0.0057 34.0 22.1 257 178-491 114-382 (470)
14 PF00665 rve: Integrase core d 66.1 28 0.0006 32.7 7.9 74 295-373 8-82 (120)
15 PF03106 WRKY: WRKY DNA -bindi 58.7 27 0.0006 30.7 5.8 30 128-158 30-59 (60)
16 PF04937 DUF659: Protein of un 50.7 1.3E+02 0.0028 31.2 10.1 108 283-398 25-137 (153)
17 PF08731 AFT: Transcription fa 43.0 82 0.0018 31.3 6.8 32 126-158 79-110 (111)
18 COG4715 Uncharacterized conser 40.7 36 0.00079 41.8 4.9 27 578-605 70-96 (587)
19 PRK14702 insertion element IS2 39.6 1.1E+02 0.0023 34.2 8.1 75 295-370 89-164 (262)
20 COG3316 Transposase and inacti 39.3 93 0.002 34.2 7.2 92 295-396 72-173 (215)
21 PF13936 HTH_38: Helix-turn-he 33.2 30 0.00065 28.3 1.9 27 180-206 3-29 (44)
22 PRK09409 IS2 transposase TnpB; 32.0 1.6E+02 0.0035 33.5 8.2 76 294-370 127-203 (301)
23 KOG3223 Uncharacterized conser 30.4 35 0.00077 36.6 2.3 28 609-636 185-212 (221)
24 KOG4605 Uncharacterized conser 23.2 1.4E+02 0.0031 29.9 4.9 46 90-153 57-105 (129)
25 PF08259 Periviscerokin: Periv 22.5 33 0.00071 20.8 0.2 8 41-48 4-11 (11)
26 PF13683 rve_3: Integrase core 21.3 35 0.00075 29.9 0.3 25 469-493 11-35 (67)
27 KOG0417 Ubiquitin-protein liga 20.9 92 0.002 32.4 3.2 53 584-644 75-128 (148)
No 1
>PLN03097 FHY3 Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional
Probab=100.00 E-value=4.6e-42 Score=416.37 Aligned_cols=477 Identities=15% Similarity=0.162 Sum_probs=329.0
Q ss_pred hcccCCCCCCCCccccceEEEEEEeeccCCCcc----CCCC---ccc---c--Ccccc------------------cccc
Q 001712 69 ARRRRSTSTSCKPKVDGILEYILYWCSFGPDDH----RKGG---IVR---P--SRTTY------------------VPKK 118 (1021)
Q Consensus 69 ~~r~~~~g~~~~~~~d~~ley~~Y~Cs~Gp~~~----~~gg---~~r---p--s~~~~------------------~~~k 118 (1021)
..-.|-+||.|++.+++|.||+.|+...|+... +++. .+. . ++-.. .+++
T Consensus 70 ~~~~P~vGMeF~S~eeA~~FYn~YA~~~GFsVRi~~srrsk~~~~ii~r~fvCsreG~~~~~~~~~~~~~~~~~k~~~~~ 149 (846)
T PLN03097 70 TNLEPLSGMEFESHGEAYSFYQEYARSMGFNTAIQNSRRSKTSREFIDAKFACSRYGTKREYDKSFNRPRARQTKQDPEN 149 (846)
T ss_pred CCccCcCCCeECCHHHHHHHHHHHHhhcCceEEeeceeccCCCCcEEEEEEEEcCCCCCcccccccccccccccccCccc
Confidence 334699999999999999999999999999974 1111 110 0 11000 0000
Q ss_pred cCCCCCCCCCCceeEEEEEEeecCCcEEEEEEecccccCCCCCCCCCCCCcccccccccccCCCCHHHHHHHHHHHHcCC
Q 001712 119 KNAGRPNTKRGCTCHFIVKRLIAEPSVALIIYNDEKHVDKNGLPCHGPQDKKAAGTRAMFAPYISEDLRLRVLSLLHVGV 198 (1021)
Q Consensus 119 ~r~~Rp~~k~GC~A~f~Vkrl~~~gsv~vii~~~~~Hvh~~~~~cH~p~d~~a~gp~a~~~p~ISde~R~~I~~LL~~GI 198 (1021)
.+++|+.+++||+|+++|++. .++. |+++-...+|+|+.. |.+ .++...|
T Consensus 150 ~~~rR~~tRtGC~A~m~Vk~~-~~gk-W~V~~fv~eHNH~L~-----p~~------------~~~~~~r----------- 199 (846)
T PLN03097 150 GTGRRSCAKTDCKASMHVKRR-PDGK-WVIHSFVKEHNHELL-----PAQ------------AVSEQTR----------- 199 (846)
T ss_pred ccccccccCCCCceEEEEEEc-CCCe-EEEEEEecCCCCCCC-----Ccc------------ccchhhh-----------
Confidence 112455689999999999983 4554 555555556988743 100 1111111
Q ss_pred ChhHHHHHhhhhhhhcCCCCCCCCcccHHHHHHHHHHhhccccccCCchHHhHHHHHHhhC--CceEEeecCCCCCCeee
Q 001712 199 SVETIMQRHNESVERQGGPCNRDDLLTHRYVRRQERSIRRSTYELDLDDAVSINMWVESHQ--SYVFFYEDFSEYDPFTL 276 (1021)
Q Consensus 199 s~~~Il~~ire~~~k~gG~~~R~~llT~qDVrNi~r~~~r~~~~L~~dD~~SV~~WVee~q--~~vF~yqd~sd~d~Fvl 276 (1021)
.|+..+...+ + ..... ..+..|.+|..+..++. .+...|...+..++++++ +|.|||.-..|++.-+.
T Consensus 200 ---~~~~~~~~~~---~-~~~~v-~~~~~d~~~~~~~~r~~--~~~~gD~~~ll~yf~~~q~~nP~Ffy~~qlDe~~~l~ 269 (846)
T PLN03097 200 ---KMYAAMARQF---A-EYKNV-VGLKNDSKSSFDKGRNL--GLEAGDTKILLDFFTQMQNMNSNFFYAVDLGEDQRLK 269 (846)
T ss_pred ---hhHHHHHhhh---h-ccccc-cccchhhcchhhHHHhh--hcccchHHHHHHHHHHHHhhCCCceEEEEEccCCCee
Confidence 1222111111 1 11111 23445667666554433 456789999999998886 89999997777776666
Q ss_pred ecc--cHHHHHHHHHhCCCceEEEecCCCCCccCCceEEEEEEcCCCCeEEEEEEEecCCChhhHHHHH-HHHHHHhhcc
Q 001712 277 GIQ--TEWQLQQMIRFGNRSLLASDSRFGTNKLKYPLHSLIVFNSDKKAIPVAWVIAPSFSSADTHRWM-RALYNRVRTK 353 (1021)
Q Consensus 277 gIq--T~~Q~~~L~rfG~~gVV~lDSThgtNky~~PL~TLlV~D~~G~giPVAf~Its~ET~edi~~WL-r~f~~~v~~k 353 (1021)
.|+ ....+..+..||+ ||++|+||.||+|++||..++|+|+||+.+++|++|+.+|+.+ .+.|| +.|+..|.++
T Consensus 270 niFWaD~~sr~~Y~~FGD--vV~fDTTY~tN~y~~Pfa~FvGvNhH~qtvlfGcaLl~dEt~e-Sf~WLf~tfl~aM~gk 346 (846)
T PLN03097 270 NLFWVDAKSRHDYGNFSD--VVSFDTTYVRNKYKMPLALFVGVNQHYQFMLLGCALISDESAA-TYSWLMQTWLRAMGGQ 346 (846)
T ss_pred eEEeccHHHHHHHHhcCC--EEEEeceeeccccCcEEEEEEEecCCCCeEEEEEEEcccCchh-hHHHHHHHHHHHhCCC
Confidence 654 5567778999998 9999999999999999999999999999999999999999985 67797 7777776543
Q ss_pred CCCcceeEEEecCchhhHHHHHHhcCC-CceeehHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHhhhcCCCChHHHHH
Q 001712 354 DPTWNLAGFIVDDPSADVHTIRDVFQC-SVLVSFWRVRHAWHKNLVKRCSEIGMRAEIFRCLGVAVDDICKGHGTIALFE 432 (1021)
Q Consensus 354 ~p~~~Pk~fMTD~d~Ae~nAI~~VFp~-~~LLC~WHV~KAW~knL~kk~~~~e~r~eVyk~L~~Lv~~tte~~~~~e~~e 432 (1021)
.|++||||.+.|+.+||.+|||. .|.+|.|||+++..+++...+. ....+...+...++.....++|+..|.
T Consensus 347 ----~P~tIiTDqd~am~~AI~~VfP~t~Hr~C~wHI~~~~~e~L~~~~~---~~~~f~~~f~~cv~~s~t~eEFE~~W~ 419 (846)
T PLN03097 347 ----APKVIITDQDKAMKSVISEVFPNAHHCFFLWHILGKVSENLGQVIK---QHENFMAKFEKCIYRSWTEEEFGKRWW 419 (846)
T ss_pred ----CCceEEecCCHHHHHHHHHHCCCceehhhHHHHHHHHHHHhhHHhh---hhhHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 68999999999999999999999 5999999999988888864322 234566778888887766668888999
Q ss_pred HHHHHhc-CchHHHHHHHHhcccchhhhhhhh-ccCCCCCCCCChHHHHhhHHHhhhhcCCccC-cccchHHHHHHHhcc
Q 001712 433 NCMEDFM-DGSDFMDYFKAVWYPRIGAWITVL-KTLPLASQETSAAMEFYHNQLKVRLLNEKDS-GVYQRTDWLVDKLGT 509 (1021)
Q Consensus 433 ~f~e~f~-d~~~F~~YFks~Wlpr~e~WA~~y-R~~P~ag~~TNN~iES~H~~LK~~yL~~~kn-~~~~RlD~LV~~L~~ 509 (1021)
.+++.|. ...+ |+...|- .+++||.+| |..+.+++.|+++.||+|+.||.++-..... .|+.++|.++..+..
T Consensus 420 ~mi~ky~L~~n~---WL~~LY~-~RekWapaY~k~~F~agm~sTqRSES~Ns~fk~yv~~~tsL~~Fv~qye~~l~~~~e 495 (846)
T PLN03097 420 KILDRFELKEDE---WMQSLYE-DRKQWVPTYMRDAFLAGMSTVQRSESINAFFDKYVHKKTTVQEFVKQYETILQDRYE 495 (846)
T ss_pred HHHHhhcccccH---HHHHHHH-hHhhhhHHHhcccccCCcccccccccHHHHHHHHhCcCCCHHHHHHHHHHHHHHHHH
Confidence 9999985 3333 4444443 258999988 7788899999999999999999754333333 356778877764322
Q ss_pred -cccccc---------c-----hhcccC--cchhhhhhhhhhccccchhhhhhcc-cCccEEEcCceeEEeecCCCceEE
Q 001712 510 -KVHSYF---------W-----LDEYTG--KDDFARYWKDEWVSGLTCWRKALKI-LDSDVVIEGRCGKVTDQLDGNKVY 571 (1021)
Q Consensus 510 -eV~s~y---------~-----lde~s~--~~~~~r~~r~E~~s~~ts~~kal~I-p~s~V~ie~~~~kV~Sq~d~~~~y 571 (1021)
+....| + ..+.+. +..+|+.||.|.... ...+ +..+ .+..+ ..|.|........+.
T Consensus 496 kE~~aD~~s~~~~P~l~t~~piEkQAs~iYT~~iF~kFQ~El~~~-~~~~-~~~~~~dg~~----~~y~V~~~~~~~~~~ 569 (846)
T PLN03097 496 EEAKADSDTWNKQPALKSPSPLEKSVSGVYTHAVFKKFQVEVLGA-VACH-PKMESQDETS----ITFRVQDFEKNQDFT 569 (846)
T ss_pred HHHHhhhhcccCCcccccccHHHHHHHHHhHHHHHHHHHHHHHHh-hheE-EeeeccCCce----EEEEEEEecCCCcEE
Confidence 221111 0 111121 566677788877542 1111 1000 11100 346776655445567
Q ss_pred EEecCCCcceeeecc-CcccCccchhHHHHHHhhc
Q 001712 572 VVRNPGSQFGICNCS-WAEMGYLCEHLLKVIIVCR 605 (1021)
Q Consensus 572 VV~n~gse~~~CsC~-~~~~G~lCkHilkV~~~~~ 605 (1021)
|+|+...+...|+|. |.+.|+||+|+|+|+.+..
T Consensus 570 V~~d~~~~~v~CsC~kFE~~GILCrHaLkVL~~~~ 604 (846)
T PLN03097 570 VTWNQTKLEVSCICRLFEYKGYLCRHALVVLQMCQ 604 (846)
T ss_pred EEEecCCCeEEeeccCeecCccchhhHHHHHhhcC
Confidence 779998889999999 5999999999999998765
No 2
>PF10551 MULE: MULE transposase domain; InterPro: IPR018289 This entry represents a domain found in Mutator-like elements (MULE)-encoded tranposases, some of which also contain a zinc-finger motif [, ]. This domain is also found in a transposase for the insertion sequence element IS256 in transposon Tn4001 [].
Probab=99.59 E-value=3.2e-15 Score=136.90 Aligned_cols=89 Identities=20% Similarity=0.282 Sum_probs=76.0
Q ss_pred cCCCCCccCCceEE---EEEEcCCCCeEEEEEEEecCCChhhHHHHHHHHHHHhhccCCCcceeEEEecCchhhHHHHHH
Q 001712 300 SRFGTNKLKYPLHS---LIVFNSDKKAIPVAWVIAPSFSSADTHRWMRALYNRVRTKDPTWNLAGFIVDDPSADVHTIRD 376 (1021)
Q Consensus 300 SThgtNky~~PL~T---LlV~D~~G~giPVAf~Its~ET~edi~~WLr~f~~~v~~k~p~~~Pk~fMTD~d~Ae~nAI~~ 376 (1021)
+||+||+| .+|++ +++.|+.|+++|+||+++++|+.+.+..+|+.+.+. .+.. |..||+|.+.++++||++
T Consensus 1 ~T~~tn~~-~~l~~~~~~~~~d~~~~~~~v~~~l~~~e~~~~~~~~l~~~~~~----~~~~-p~~ii~D~~~~~~~Ai~~ 74 (93)
T PF10551_consen 1 GTYKTNKY-GPLLYLMIAVGIDGNGRGFPVAFALVSSESEESYEWFLEKLKEA----MPQK-PKVIISDFDKALINAIKE 74 (93)
T ss_pred Cccccccc-cccceeceEEEEcCCCCEEEEEEEEEcCCChhhhHHHHHHhhhc----cccC-ceeeeccccHHHHHHHHH
Confidence 59999999 77775 999999999999999999999998766444544443 3334 999999999999999999
Q ss_pred hcCC-CceeehHHHHHHHH
Q 001712 377 VFQC-SVLVSFWRVRHAWH 394 (1021)
Q Consensus 377 VFp~-~~LLC~WHV~KAW~ 394 (1021)
+||. .+++|.||+.|+|+
T Consensus 75 vfP~~~~~~C~~H~~~n~k 93 (93)
T PF10551_consen 75 VFPDARHQLCLFHILRNIK 93 (93)
T ss_pred HCCCceEehhHHHHHHhhC
Confidence 9998 69999999999873
No 3
>PF00872 Transposase_mut: Transposase, Mutator family; InterPro: IPR001207 Autonomous mobile genetic elements such as transposon or insertion sequences (IS) encode an enzyme, transposase, that is required for excising and inserting the mobile element. Transposases have been grouped into various families [, , ]. The mutator family of transposases consists of a number of elements that include, mutator from maize, IsT2 from Thiobacillus ferrooxidans, Is256 from Staphylococcus aureus, Is1201 from Lactobacillus helveticus, Is1081 from Mycobacterium bovis, IsRm3 from Rhizobium meliloti and others. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated
Probab=99.09 E-value=2.5e-11 Score=139.16 Aligned_cols=244 Identities=16% Similarity=0.189 Sum_probs=173.3
Q ss_pred CCCHHHHHHHHHHHHcCCChhHHHHHhhhhhhhcCCCCCCCCcccHHHHHHHHHHhhccccccCCchHHhHHHHHHhhCC
Q 001712 181 YISEDLRLRVLSLLHVGVSVETIMQRHNESVERQGGPCNRDDLLTHRYVRRQERSIRRSTYELDLDDAVSINMWVESHQS 260 (1021)
Q Consensus 181 ~ISde~R~~I~~LL~~GIs~~~Il~~ire~~~k~gG~~~R~~llT~qDVrNi~r~~~r~~~~L~~dD~~SV~~WVee~q~ 260 (1021)
+..++.-+.|.+|-..|+|..+|-+.+.+.. |+. -+...-|.++...+. ..+..|-.+-
T Consensus 98 r~~~~l~~~i~~ly~~G~Str~i~~~l~~l~----g~~----~~S~s~vSri~~~~~-----------~~~~~w~~R~-- 156 (381)
T PF00872_consen 98 RREDSLEELIISLYLKGVSTRDIEEALEELY----GEV----AVSKSTVSRITKQLD-----------EEVEAWRNRP-- 156 (381)
T ss_pred hhhhhhhhhhhhhhccccccccccchhhhhh----ccc----ccCchhhhhhhhhhh-----------hhHHHHhhhc--
Confidence 3466778889999999999999988765553 311 145555666544332 2344554331
Q ss_pred ceEEeecCCCCCCeeeecccHHHHHHHHHhCCCceEEEecCCCCCc-----cCCceEEEEEEcCCCCeEEEEEEEecCCC
Q 001712 261 YVFFYEDFSEYDPFTLGIQTEWQLQQMIRFGNRSLLASDSRFGTNK-----LKYPLHSLIVFNSDKKAIPVAWVIAPSFS 335 (1021)
Q Consensus 261 ~vF~yqd~sd~d~FvlgIqT~~Q~~~L~rfG~~gVV~lDSThgtNk-----y~~PL~TLlV~D~~G~giPVAf~Its~ET 335 (1021)
|....- -+|.+|+||-.-+ -+-.+++++|+|..|+-.++++.+...|+
T Consensus 157 --------------------------L~~~~y-~~l~iD~~~~kvr~~~~~~~~~~~v~iGi~~dG~r~vLg~~~~~~Es 209 (381)
T PF00872_consen 157 --------------------------LESEPY-PYLWIDGTYFKVREDGRVVKKAVYVAIGIDEDGRREVLGFWVGDRES 209 (381)
T ss_pred --------------------------cccccc-cceeeeeeecccccccccccchhhhhhhhhcccccceeeeecccCCc
Confidence 111100 1689999986443 35688999999999999999999998887
Q ss_pred hhhHHHHHHHHHHHhhccCCCcceeEEEecCchhhHHHHHHhcCC-CceeehHHHHHHHHHHHhhhccchhhHHHHHHHH
Q 001712 336 SADTHRWMRALYNRVRTKDPTWNLAGFIVDDPSADVHTIRDVFQC-SVLVSFWRVRHAWHKNLVKRCSEIGMRAEIFRCL 414 (1021)
Q Consensus 336 ~edi~~WLr~f~~~v~~k~p~~~Pk~fMTD~d~Ae~nAI~~VFp~-~~LLC~WHV~KAW~knL~kk~~~~e~r~eVyk~L 414 (1021)
... |. .||..+++++ --.|..|++|.......||+++||. ++..|.+|..|+..+++.+ ..+.++...|
T Consensus 210 ~~~---W~-~~l~~L~~RG-l~~~~lvv~Dg~~gl~~ai~~~fp~a~~QrC~vH~~RNv~~~v~~-----k~~~~v~~~L 279 (381)
T PF00872_consen 210 AAS---WR-EFLQDLKERG-LKDILLVVSDGHKGLKEAIREVFPGAKWQRCVVHLMRNVLRKVPK-----KDRKEVKADL 279 (381)
T ss_pred cCE---ee-ecchhhhhcc-ccccceeeccccccccccccccccchhhhhheechhhhhcccccc-----ccchhhhhhc
Confidence 653 43 3445554432 1257889999999999999999997 6999999999876666643 3456777888
Q ss_pred HHHHhhhcCCCChHHHHHHHHHHhc-CchHHHHHHHHhcccchhhhhhhhccCCC---CCCCCChHHHHhhHHHhhhh
Q 001712 415 GVAVDDICKGHGTIALFENCMEDFM-DGSDFMDYFKAVWYPRIGAWITVLKTLPL---ASQETSAAMEFYHNQLKVRL 488 (1021)
Q Consensus 415 ~~Lv~~tte~~~~~e~~e~f~e~f~-d~~~F~~YFks~Wlpr~e~WA~~yR~~P~---ag~~TNN~iES~H~~LK~~y 488 (1021)
..+....+.+ .+.+.+++|.+.|. .+|.+.++++..|-..... |+ +|. ..+.|||.+|++|+.||+..
T Consensus 280 k~I~~a~~~e-~a~~~l~~f~~~~~~kyp~~~~~l~~~~~~~~tf----~~-fP~~~~~~i~TTN~iEsln~~irrr~ 351 (381)
T PF00872_consen 280 KAIYQAPDKE-EAREALEEFAEKWEKKYPKAAKSLEENWDELLTF----LD-FPPEHRRSIRTTNAIESLNKEIRRRT 351 (381)
T ss_pred cccccccccc-hhhhhhhhcccccccccchhhhhhhhccccccce----ee-ecchhccccchhhhccccccchhhhc
Confidence 8877766654 56778999999886 6899999999888653322 22 232 36789999999999999743
No 4
>COG3328 Transposase and inactivated derivatives [DNA replication, recombination, and repair]
Probab=97.54 E-value=0.00053 Score=79.25 Aligned_cols=177 Identities=11% Similarity=0.036 Sum_probs=119.7
Q ss_pred ceEEEecCCCCCc--cCCceEEEEEEcCCCCeEEEEEEEecCCChhhHHHHHHHHHHHhhccCCCcceeEEEecCchhhH
Q 001712 294 SLLASDSRFGTNK--LKYPLHSLIVFNSDKKAIPVAWVIAPSFSSADTHRWMRALYNRVRTKDPTWNLAGFIVDDPSADV 371 (1021)
Q Consensus 294 gVV~lDSThgtNk--y~~PL~TLlV~D~~G~giPVAf~Its~ET~edi~~WLr~f~~~v~~k~p~~~Pk~fMTD~d~Ae~ 371 (1021)
.++.+|++|---+ -+-.+|..++++..|+--..++.+...|. .-...||..|..+ .+ .....+++|.-...-
T Consensus 146 ~~v~~D~~~~k~r~v~~~~~~ia~Gv~~eG~reilg~~~~~~e~-~~w~~~l~~l~~r--gl---~~v~l~v~Dg~~gl~ 219 (379)
T COG3328 146 PYVYLDAKYVKVRSVRNKAVYIAIGVTEEGRREILGIWVGVRES-KFWLSFLLDLKNR--GL---SDVLLVVVDGLKGLP 219 (379)
T ss_pred eEEEEecceeehhhhhhheeeeeeccCcccchhhhceeeecccc-hhHHHHHHHHHhc--cc---cceeEEecchhhhhH
Confidence 3789999996655 45688889999999999999999999988 4333344444333 11 134557779999999
Q ss_pred HHHHHhcCC-CceeehHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHhc-CchHHHHHHH
Q 001712 372 HTIRDVFQC-SVLVSFWRVRHAWHKNLVKRCSEIGMRAEIFRCLGVAVDDICKGHGTIALFENCMEDFM-DGSDFMDYFK 449 (1021)
Q Consensus 372 nAI~~VFp~-~~LLC~WHV~KAW~knL~kk~~~~e~r~eVyk~L~~Lv~~tte~~~~~e~~e~f~e~f~-d~~~F~~YFk 449 (1021)
+||..+||. .+..|..|..++....+.. ..+.++...+..+....+.+ .....|..+.+.|. ..|.-.....
T Consensus 220 ~aI~~v~p~a~~Q~C~vH~~Rnll~~v~~-----k~~d~i~~~~~~I~~a~~~e-~~~~~~~~~~~~w~~~yP~i~~~~~ 293 (379)
T COG3328 220 EAISAVFPQAAVQRCIVHLVRNLLDKVPR-----KDQDAVLSDLRSIYIAPDAE-EALLALLAFSELWGKRYPAILKSWR 293 (379)
T ss_pred HHHHHhccHhhhhhhhhHHHhhhhhhhhh-----hhhHHHHhhhhhhhccCCcH-HHHHHHHHHHHhhhhhcchHHHHHH
Confidence 999999997 6999999999865555543 34455555555544444332 34556777776664 4556555555
Q ss_pred HhcccchhhhhhhhccCCCC---CCCCChHHHHhhHHHhhh
Q 001712 450 AVWYPRIGAWITVLKTLPLA---SQETSAAMEFYHNQLKVR 487 (1021)
Q Consensus 450 s~Wlpr~e~WA~~yR~~P~a---g~~TNN~iES~H~~LK~~ 487 (1021)
+.|..... .+. +|.. .+.|+|.+|++|+.+++.
T Consensus 294 ~~~~~~~~----F~~-fp~~~r~~i~ttN~IE~~n~~ir~~ 329 (379)
T COG3328 294 NALEELLP----FFA-FPSEIRKIIYTTNAIESLNKLIRRR 329 (379)
T ss_pred HHHHHhcc----ccc-CcHHHHhHhhcchHHHHHHHHHHHH
Confidence 55544221 222 3332 478999999999988864
No 5
>PF03101 FAR1: FAR1 DNA-binding domain; InterPro: IPR004330 Phytochrome A is the primary photoreceptor for mediating various far-red light-induced responses in higher plants. It has been found that the proteins governing this response, which include FAR-RED ELONGATED HYPOCOTYL3 (FHY3) and FAR-RED-IMPAIRED RESPONSE1 (FAR1), are a pair of homologous proteins sharing significant sequence homology to mutator-like transposases. These proteins appear to be novel transcription factors, which are essential for activating the expression of FHY1 and FHL (for FHY1-like) and related genes, whose products are required for light-induced phytochrome A nuclear accumulation and subsequent light responses in plants. The FRS (FAR1 Related Sequences) family of proteins share a similar domain structure to mutator-like transposases, including an N-terminal C2H2 zinc finger domain, a central putative core transposase domain, and a C-terminal SWIM motif (named after SWI2/SNF and MuDR transposases). It seems plausible that the FRS family represent transcription factors derived from mutator-like transposases [, ]. This entry represents a domain found in FAR1 and FRS proteins. It contains a WRKY like fold and is therefore most likely a zinc binding DNA-binding domain.
Probab=97.11 E-value=0.0013 Score=60.48 Aligned_cols=70 Identities=26% Similarity=0.394 Sum_probs=46.4
Q ss_pred CCCccccceEEEEEEeeccCCCccCCCCccccCcccccccccCCCCCCCCCCceeEEEEEEeecCCcEEEEEEecccccC
Q 001712 78 SCKPKVDGILEYILYWCSFGPDDHRKGGIVRPSRTTYVPKKKNAGRPNTKRGCTCHFIVKRLIAEPSVALIIYNDEKHVD 157 (1021)
Q Consensus 78 ~~~~~~d~~ley~~Y~Cs~Gp~~~~~gg~~rps~~~~~~~k~r~~Rp~~k~GC~A~f~Vkrl~~~gsv~vii~~~~~Hvh 157 (1021)
..+.+.++...+..|.|++ +|..++..+. ..+++..++.+++||+|+|.|++.. ++ -|++.-...+|+|
T Consensus 19 s~~~~~~~~~~~~~~~C~r-------~G~~~~~~~~--~~~~~r~~~s~ktgC~a~i~v~~~~-~~-~w~v~~~~~~HNH 87 (91)
T PF03101_consen 19 SRKSKKNGEIKRVTFVCSR-------GGKYKSKKKN--EEKRRRNRPSKKTGCKARINVKRRK-DG-KWRVTSFVLEHNH 87 (91)
T ss_pred eEeCCCCceEEEEEEEECC-------cccccccccc--cccccccccccccCCCEEEEEEEcc-CC-EEEEEECcCCcCC
Confidence 3344678888999999994 3333333211 2234557788999999999999854 44 4555544456988
Q ss_pred C
Q 001712 158 K 158 (1021)
Q Consensus 158 ~ 158 (1021)
+
T Consensus 88 ~ 88 (91)
T PF03101_consen 88 P 88 (91)
T ss_pred C
Confidence 6
No 6
>PF15299 ALS2CR8: Amyotrophic lateral sclerosis 2 chromosomal region candidate gene 8
Probab=96.03 E-value=0.041 Score=59.74 Aligned_cols=138 Identities=23% Similarity=0.365 Sum_probs=84.1
Q ss_pred EEEEeeccCCCccCCCCccccCc----c-cccccccCCCCCCCCCCceeEEEEEEeecCCcEEEEE--------------
Q 001712 89 YILYWCSFGPDDHRKGGIVRPSR----T-TYVPKKKNAGRPNTKRGCTCHFIVKRLIAEPSVALII-------------- 149 (1021)
Q Consensus 89 y~~Y~Cs~Gp~~~~~gg~~rps~----~-~~~~~k~r~~Rp~~k~GC~A~f~Vkrl~~~gsv~vii-------------- 149 (1021)
...|.|++|++.+.....-+-.+ . ...+++++...+.++.+|||.|.++....-|.+.+..
T Consensus 34 ~~~~~Cq~G~dr~~~~~~k~~~~~~~~~~~~~~~~~~~~~~skK~~CPA~I~Ik~I~~FPdykv~~~~~~~~~~~r~~~~ 113 (225)
T PF15299_consen 34 TKVYECQHGKDRNKKRKKKRKSQKNRDEEDKSKKKRRRSKPSKKRDCPARIYIKEIIKFPDYKVPTNSQKDTRRERRKAS 113 (225)
T ss_pred ceEEEeeCCCccchhhhhhhhhhccccccccccccccccccccCCCCCeEEEEEEEEEcCCcccccchhhhhHHHHHHHH
Confidence 35677999999994221111111 0 1112344455677899999999999877777666653
Q ss_pred -------------------E----ecccccCCCCCCCCCCCCcccccccccccCCCCHHHHHHHHHHHHcCCCh-hHHHH
Q 001712 150 -------------------Y----NDEKHVDKNGLPCHGPQDKKAAGTRAMFAPYISEDLRLRVLSLLHVGVSV-ETIMQ 205 (1021)
Q Consensus 150 -------------------~----~~~~Hvh~~~~~cH~p~d~~a~gp~a~~~p~ISde~R~~I~~LL~~GIs~-~~Il~ 205 (1021)
| ...+|.+|. ....++ .....|.+...+.|.+|+..|++. .+|.+
T Consensus 114 ~~lk~~l~~~~~~~~~~r~yv~lP~~~~H~~H~-------~~~~~~----~~~q~~~~~v~~ki~eLv~~gv~~v~e~k~ 182 (225)
T PF15299_consen 114 KKLKKALLSGKSIEGERRFYVQLPSPEEHSGHP-------IGQEAA----GLKQPLDPRVVEKIHELVAQGVTSVPEMKR 182 (225)
T ss_pred HHHHHHHhcCCCCCceEEEEEECCChHhcCCCc-------cccccc----cccccCCHHHHHHHHHHHHcccccHHHHHH
Confidence 1 112232221 000011 244568888999999999999886 45666
Q ss_pred Hhhhhhhhc-------CCCCCCCCcccHHHHHHHHHHhh
Q 001712 206 RHNESVERQ-------GGPCNRDDLLTHRYVRRQERSIR 237 (1021)
Q Consensus 206 ~ire~~~k~-------gG~~~R~~llT~qDVrNi~r~~~ 237 (1021)
.++..+... .-..+|...+|.+||+|.+....
T Consensus 183 ~l~~fV~~~lf~~~~~p~~~n~~y~Pt~~di~n~~~~~~ 221 (225)
T PF15299_consen 183 HLKKFVEEELFKDQEPPPPTNRRYFPTDKDIRNHMYSAK 221 (225)
T ss_pred HHHHHhhhhccCCCCCCCCCccccCCchHHHHHHHHHHH
Confidence 554443331 22346778899999999987654
No 7
>smart00575 ZnF_PMZ plant mutator transposase zinc finger.
Probab=94.50 E-value=0.022 Score=42.38 Aligned_cols=24 Identities=29% Similarity=0.631 Sum_probs=20.8
Q ss_pred eeecc-CcccCccchhHHHHHHhhc
Q 001712 582 ICNCS-WAEMGYLCEHLLKVIIVCR 605 (1021)
Q Consensus 582 ~CsC~-~~~~G~lCkHilkV~~~~~ 605 (1021)
+|+|. |...|++|.|+++|+...+
T Consensus 2 ~CsC~~~~~~gipC~H~i~v~~~~~ 26 (28)
T smart00575 2 TCSCRKFQLSGIPCRHALAAAIHIG 26 (28)
T ss_pred cccCCCcccCCccHHHHHHHHHHhC
Confidence 69998 6899999999999988643
No 8
>PF04434 SWIM: SWIM zinc finger; InterPro: IPR007527 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the SWIM (SWI2/SNF2 and MuDR) zinc-binding domain, which is found in a variety of prokaryotic and eukaryotic proteins, such as mitogen-activated protein kinase kinase kinase 1 (or MEKK1). It is also found in the related protein MEX (MEKK1-related protein X), a testis-expressed protein that acts as an E3 ubiquitin ligase through the action of E2 ubiquitin-conjugating enzymes in the proteasome degradation pathway; the SWIM domain is critical for MEX ubiquitination []. SWIM domains are also found in the homologous recombination protein Sws1 [], as well as in several hypothetical proteins. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding
Probab=93.44 E-value=0.071 Score=42.24 Aligned_cols=26 Identities=23% Similarity=0.653 Sum_probs=21.5
Q ss_pred CcceeeeccC-cccCccchhHHHHHHh
Q 001712 578 SQFGICNCSW-AEMGYLCEHLLKVIIV 603 (1021)
Q Consensus 578 se~~~CsC~~-~~~G~lCkHilkV~~~ 603 (1021)
.....|+|.. .+.|.+|+|+++|+..
T Consensus 12 ~~~~~CsC~~~~~~~~~CkHi~av~~~ 38 (40)
T PF04434_consen 12 IEQASCSCPYFQFRGGPCKHIVAVLLA 38 (40)
T ss_pred ccccEeeCCCccccCCcchhHHHHHHh
Confidence 4557999995 6699999999998763
No 9
>PF01610 DDE_Tnp_ISL3: Transposase; InterPro: IPR002560 Autonomous mobile genetic elements such as transposon or insertion sequences (IS) encode an enzyme, transposase, that is required for excising and inserting the mobile element. Transposases have been grouped into various families [, , ]. This family includes the IS204 [], IS1001 [], IS1096 [] and IS1165 [] transposases. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated
Probab=92.45 E-value=0.2 Score=54.15 Aligned_cols=93 Identities=16% Similarity=0.172 Sum_probs=63.0
Q ss_pred EEecCCCCCccCCceEEEEEEcCCC-CeEEEEEEEecCCChhhHHHHHHHHHHHhhccCCCcceeEEEecCchhhHHHHH
Q 001712 297 ASDSRFGTNKLKYPLHSLIVFNSDK-KAIPVAWVIAPSFSSADTHRWMRALYNRVRTKDPTWNLAGFIVDDPSADVHTIR 375 (1021)
Q Consensus 297 ~lDSThgtNky~~PL~TLlV~D~~G-~giPVAf~Its~ET~edi~~WLr~f~~~v~~k~p~~~Pk~fMTD~d~Ae~nAI~ 375 (1021)
+||=+.....++. |..++.|-.. .+-++ .++.+.+.+.+..||..++. . ...-.+++|.+|...++..|++
T Consensus 2 giDE~~~~~g~~~--y~t~~~d~~~~~~~il--~i~~~r~~~~l~~~~~~~~~---~-~~~~~v~~V~~Dm~~~y~~~~~ 73 (249)
T PF01610_consen 2 GIDEFAFRKGHRS--YVTVVVDLDTDTGRIL--DILPGRDKETLKDFFRSLYP---E-EERKNVKVVSMDMSPPYRSAIR 73 (249)
T ss_pred eEeeeeeecCCcc--eeEEEEECccCCceEE--EEcCCccHHHHHHHHHHhCc---c-ccccceEEEEcCCCcccccccc
Confidence 4566555554553 5556666522 23333 36677777777777655421 1 1123789999999999999999
Q ss_pred HhcCC-CceeehHHHHHHHHHHH
Q 001712 376 DVFQC-SVLVSFWRVRHAWHKNL 397 (1021)
Q Consensus 376 ~VFp~-~~LLC~WHV~KAW~knL 397 (1021)
+.||+ .+.+-.|||.+...+.+
T Consensus 74 ~~~P~A~iv~DrFHvvk~~~~al 96 (249)
T PF01610_consen 74 EYFPNAQIVADRFHVVKLANRAL 96 (249)
T ss_pred ccccccccccccchhhhhhhhcc
Confidence 99998 68999999999776644
No 10
>PF03050 DDE_Tnp_IS66: Transposase IS66 family ; InterPro: IPR004291 Transposase proteins are necessary for efficient DNA transposition. This family includes the bacterial insertion sequence (IS) element, IS66, from Agrobacterium tumefaciens []. IS66 may cause genetic and structural variations of the T region and the vir region of the octopine Ti plasmids []. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=86.60 E-value=0.91 Score=49.94 Aligned_cols=82 Identities=16% Similarity=0.140 Sum_probs=49.2
Q ss_pred eEEEecCCCC-----CccCCceEEEEEEcCCCCeEEEEEEEecCCChhhHHHHHHHHHHHhhccCCCcceeEEEecCchh
Q 001712 295 LLASDSRFGT-----NKLKYPLHSLIVFNSDKKAIPVAWVIAPSFSSADTHRWMRALYNRVRTKDPTWNLAGFIVDDPSA 369 (1021)
Q Consensus 295 VV~lDSThgt-----Nky~~PL~TLlV~D~~G~giPVAf~Its~ET~edi~~WLr~f~~~v~~k~p~~~Pk~fMTD~d~A 369 (1021)
++++|-|.-. +.-+.-+.+ +.+.. .+.|.+..+...+.+..+|.. +. .++++|.-.+
T Consensus 69 ~~~~DET~~~vl~~~~g~~~~~Wv--~~~~~----~v~f~~~~sR~~~~~~~~L~~-----------~~-GilvsD~y~~ 130 (271)
T PF03050_consen 69 VVHADETGWRVLDKGKGKKGYLWV--FVSPE----VVLFFYAPSRSSKVIKEFLGD-----------FS-GILVSDGYSA 130 (271)
T ss_pred eeccCCceEEEeccccccceEEEe--eeccc----eeeeeecccccccchhhhhcc-----------cc-eeeecccccc
Confidence 6777777644 222222333 22222 566667666666655555422 22 4689998877
Q ss_pred hHHHHHHhcCCCceeehHHHHHHHHHHHh
Q 001712 370 DVHTIRDVFQCSVLVSFWRVRHAWHKNLV 398 (1021)
Q Consensus 370 e~nAI~~VFp~~~LLC~WHV~KAW~knL~ 398 (1021)
+.. +. +..+..|+-|++|.+.+-+.
T Consensus 131 Y~~-~~---~~~hq~C~AH~~R~~~~~~~ 155 (271)
T PF03050_consen 131 YNK-LA---GITHQLCWAHLRRDFQDAAE 155 (271)
T ss_pred ccc-cc---cccccccccccccccccccc
Confidence 644 22 55799999999987766554
No 11
>PF13610 DDE_Tnp_IS240: DDE domain
Probab=75.59 E-value=0.78 Score=46.01 Aligned_cols=77 Identities=8% Similarity=0.053 Sum_probs=55.5
Q ss_pred eEEEecCCC-CCccCCceEEEEEEcCCCCeEEEEEEEecCCChhhHHHHHHHHHHHhhccCCCcceeEEEecCchhhHHH
Q 001712 295 LLASDSRFG-TNKLKYPLHSLIVFNSDKKAIPVAWVIAPSFSSADTHRWMRALYNRVRTKDPTWNLAGFIVDDPSADVHT 373 (1021)
Q Consensus 295 VV~lDSThg-tNky~~PL~TLlV~D~~G~giPVAf~Its~ET~edi~~WLr~f~~~v~~k~p~~~Pk~fMTD~d~Ae~nA 373 (1021)
.+++|-||= .+.. --|..-.+|..|+ .+.+.++...+......+|+.++ ...+ -.|..|+||...+...|
T Consensus 3 ~w~~DEt~iki~G~--~~yl~~aiD~~~~--~l~~~ls~~Rd~~aA~~Fl~~~l----~~~~-~~p~~ivtDk~~aY~~A 73 (140)
T PF13610_consen 3 SWHVDETYIKIKGK--WHYLWRAIDAEGN--ILDFYLSKRRDTAAAKRFLKRAL----KRHR-GEPRVIVTDKLPAYPAA 73 (140)
T ss_pred EEEEeeEEEEECCE--EEEEEEeeccccc--chhhhhhhhcccccceeeccccc----eeec-cccceeecccCCccchh
Confidence 589999993 3333 3344567898888 67888888777665444444433 3332 47999999999999999
Q ss_pred HHHhcCC
Q 001712 374 IRDVFQC 380 (1021)
Q Consensus 374 I~~VFp~ 380 (1021)
+++.++.
T Consensus 74 ~~~l~~~ 80 (140)
T PF13610_consen 74 IKELNPE 80 (140)
T ss_pred hhhcccc
Confidence 9999986
No 12
>PHA02517 putative transposase OrfB; Reviewed
Probab=73.77 E-value=19 Score=39.73 Aligned_cols=70 Identities=10% Similarity=0.028 Sum_probs=42.4
Q ss_pred eEEEecCCCCCccCCceEEEEEEcCCCCeEEEEEEEecCCChhhHHHHHHHHHHHhhccCCCcceeEEEecCchhh
Q 001712 295 LLASDSRFGTNKLKYPLHSLIVFNSDKKAIPVAWVIAPSFSSADTHRWMRALYNRVRTKDPTWNLAGFIVDDPSAD 370 (1021)
Q Consensus 295 VV~lDSThgtNky~~PL~TLlV~D~~G~giPVAf~Its~ET~edi~~WLr~f~~~v~~k~p~~~Pk~fMTD~d~Ae 370 (1021)
+++.|-||-....+. .|.+.++|.+-+. .+||.+....+.+.+..+|...+.. . +...+-.|.||....+
T Consensus 112 ~w~~D~t~~~~~~g~-~yl~~iiD~~sr~-i~~~~~~~~~~~~~~~~~l~~a~~~---~-~~~~~~i~~sD~G~~y 181 (277)
T PHA02517 112 LWVADFTYVSTWQGW-VYVAFIIDVFARR-IVGWRVSSSMDTDFVLDALEQALWA---R-GRPGGLIHHSDKGSQY 181 (277)
T ss_pred eEEeceeEEEeCCCC-EEEEEecccCCCe-eeecccCCCCChHHHHHHHHHHHHh---c-CCCcCcEeeccccccc
Confidence 899999985433343 5778888887554 6788888877776555555443332 1 1111225567776543
No 13
>PF06782 UPF0236: Uncharacterised protein family (UPF0236); InterPro: IPR009620 This is a group of proteins of unknown function.
Probab=69.79 E-value=2.6e+02 Score=33.97 Aligned_cols=257 Identities=12% Similarity=0.089 Sum_probs=122.9
Q ss_pred ccCCCCHHHHHHHHHHHHcCCChhHHHHHhhhhhhhcCCCCCCCCcccHHHHHHHHHHhhccccccCCchHHhHHHHHHh
Q 001712 178 FAPYISEDLRLRVLSLLHVGVSVETIMQRHNESVERQGGPCNRDDLLTHRYVRRQERSIRRSTYELDLDDAVSINMWVES 257 (1021)
Q Consensus 178 ~~p~ISde~R~~I~~LL~~GIs~~~Il~~ire~~~k~gG~~~R~~llT~qDVrNi~r~~~r~~~~L~~dD~~SV~~WVee 257 (1021)
.+.++|+..+..|+++... .|..+.-+.+.+.. | ..-++++-|.|+.+........... .++
T Consensus 114 ~~~R~S~~~~~~i~~~a~~-~sYr~aa~~l~~~~----~----~~~iS~~tV~~~v~~~g~~~~~~~~---------~~k 175 (470)
T PF06782_consen 114 KYQRISPELKEKIVELATE-MSYRKAAEILEELL----G----NVSISKQTVWNIVKEAGFEEIKEEE---------KEK 175 (470)
T ss_pred cccchhHHHHHHHHHHHhh-cCHHHHHHHHhhcc----C----CCccCHHHHHHHHHhccchhhhccc---------ccc
Confidence 4568999999999998766 88887766543332 1 1248999999998877621100000 011
Q ss_pred hCCceEEeecCCCCCCeeeecccHHHHHHHHHhCCCceEEEecCCCCCccCCceEEEEEEcCCCCeEEEEE-EEec--CC
Q 001712 258 HQSYVFFYEDFSEYDPFTLGIQTEWQLQQMIRFGNRSLLASDSRFGTNKLKYPLHSLIVFNSDKKAIPVAW-VIAP--SF 334 (1021)
Q Consensus 258 ~q~~vF~yqd~sd~d~FvlgIqT~~Q~~~L~rfG~~gVV~lDSThgtNky~~PL~TLlV~D~~G~giPVAf-~Its--~E 334 (1021)
.+.+++|-. .|++.+..|-+....... .++.+..-+- -.....++...+.- .+++ .+
T Consensus 176 ~~~~~LyIE----aDg~~v~~qg~~~~~~e~-----k~~~vheG~~-----------~~~~~~~R~~L~n~~~f~~~~~~ 235 (470)
T PF06782_consen 176 KKVPVLYIE----ADGVHVKLQGKKKKKKEV-----KLFVVHEGWE-----------KEKPGGKRNKLKNKRHFVSGVGE 235 (470)
T ss_pred CCCCeEEEe----cCcceeccccccccccee-----eEEEEEeeee-----------eeeccCCcceeecchheeccccc
Confidence 123344332 234444444110000000 0111111100 00011122233322 2233 12
Q ss_pred ChhhHHHHHHHHHHHhhccCCCcc--eeEEEecCchhhHHHHHHhcCC-CceeehHHHHHHHHHHHhhhccchhhHHHHH
Q 001712 335 SSADTHRWMRALYNRVRTKDPTWN--LAGFIVDDPSADVHTIRDVFQC-SVLVSFWRVRHAWHKNLVKRCSEIGMRAEIF 411 (1021)
Q Consensus 335 T~edi~~WLr~f~~~v~~k~p~~~--Pk~fMTD~d~Ae~nAI~~VFp~-~~LLC~WHV~KAW~knL~kk~~~~e~r~eVy 411 (1021)
..+++ | ..+.+.+.+....-. --++.+|.+.=..++ .+.||. .+.|..||+.|+..+.+.. ..+.+..++
T Consensus 236 ~~~~~--~-~~v~~~i~~~Y~~~~~~~iiingDGa~WIk~~-~~~~~~~~~~LD~FHl~k~i~~~~~~---~~~~~~~~~ 308 (470)
T PF06782_consen 236 SAEEF--W-EEVLDYIYNHYDLDKTTKIIINGDGASWIKEG-AEFFPKAEYFLDRFHLNKKIKQALSH---DPELKEKIR 308 (470)
T ss_pred chHHH--H-HHHHHHHHHhcCcccceEEEEeCCCcHHHHHH-HHhhcCceEEecHHHHHHHHHHHhhh---ChHHHHHHH
Confidence 22222 3 233444433221111 234556666644443 447775 5899999999998877742 233444455
Q ss_pred HHHHHHHhhhcCCCChHHHHHHHHHHhcC------chHHHHHHHHhcccchhhhhhhhccCCCCCCCCChHHHHhhHHHh
Q 001712 412 RCLGVAVDDICKGHGTIALFENCMEDFMD------GSDFMDYFKAVWYPRIGAWITVLKTLPLASQETSAAMEFYHNQLK 485 (1021)
Q Consensus 412 k~L~~Lv~~tte~~~~~e~~e~f~e~f~d------~~~F~~YFks~Wlpr~e~WA~~yR~~P~ag~~TNN~iES~H~~LK 485 (1021)
+.|. ..+.. .+...++.+.....+ -..|..|+.++|-.- ..|+.- .+.......|+.|++|.
T Consensus 309 ~al~----~~d~~-~l~~~L~~~~~~~~~~~~~~~i~~~~~Yl~~n~~~i-----~~y~~~--~~~~g~g~ee~~~~~~s 376 (470)
T PF06782_consen 309 KALK----KGDKK-KLETVLDTAESCAKDEEERKKIRKLRKYLLNNWDGI-----KPYRER--EGLRGIGAEESVSHVLS 376 (470)
T ss_pred HHHH----hcCHH-HHHHHHHHHHHhhhchHHHHHHHHHHHHHHHCHHHh-----hhhhhc--cCCCccchhhhhhhHHH
Confidence 4443 22111 222333333322222 137889999988642 123320 12233345899999997
Q ss_pred hhhcCC
Q 001712 486 VRLLNE 491 (1021)
Q Consensus 486 ~~yL~~ 491 (1021)
+.+-.+
T Consensus 377 ~RmK~r 382 (470)
T PF06782_consen 377 YRMKSR 382 (470)
T ss_pred HHhcCC
Confidence 765544
No 14
>PF00665 rve: Integrase core domain; InterPro: IPR001584 Integrase comprises three domains capable of folding independently and whose three-dimensional structures are known. However, the manner in which the N-terminal, catalytic, and C-terminal domains interact in the holoenzyme remains obscure. Numerous studies indicate that the enzyme functions as a multimer, minimally a dimer. The integrase proteins from Human immunodeficiency virus 1 (HIV-1) and Avian sarcoma virus (ASV) have been studied most carefully with respect to the structural basis of catalysis. Although the active site of ASV integrase does not undergo significant conformational changes on binding the required metal cofactor, that of HIV-1 does. This active site-mediated conformational change in HIV-1 reorganises the catalytic core and C-terminal domains and appears to promote an interaction that is favourable for catalysis []. Retroviral integrase is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. The presence of retrovirus integrase-related gene sequences in eukaryotes is known. Bacterial transposases involved in the transposition of the insertion sequence also belong to this group. HIV integrase catalyses the incorporation of virally derived DNA into the human genome. This unique step in the virus life cycle provides a variety of points for intervention and hence is an attractive target for the development of new therapeutics for the treatment of AIDS []. Substrate recognition by the retroviral integrase enzyme is critical for retroviral integration. To catalyse this recombination event, integrase must recognise and act on two types of substrates, viral DNA and host DNA, yet the necessary interactions exhibit markedly different degrees of specificity [].; GO: 0015074 DNA integration; PDB: 3AO3_A 3OVN_A 3AO5_A 3AO4_A 3AO1_A 1C6V_D 3HPG_A 3HPH_A 3OYD_A 3OYF_B ....
Probab=66.14 E-value=28 Score=32.66 Aligned_cols=74 Identities=8% Similarity=-0.063 Sum_probs=47.5
Q ss_pred eEEEecCCCC-CccCCceEEEEEEcCCCCeEEEEEEEecCCChhhHHHHHHHHHHHhhccCCCcceeEEEecCchhhHHH
Q 001712 295 LLASDSRFGT-NKLKYPLHSLIVFNSDKKAIPVAWVIAPSFSSADTHRWMRALYNRVRTKDPTWNLAGFIVDDPSADVHT 373 (1021)
Q Consensus 295 VV~lDSThgt-Nky~~PL~TLlV~D~~G~giPVAf~Its~ET~edi~~WLr~f~~~v~~k~p~~~Pk~fMTD~d~Ae~nA 373 (1021)
++++|.++-. ...+-.++.++++|.+-+. .+++.+...++...+...|...+.... ...|+.+.+|...++.+.
T Consensus 8 ~~~~D~~~~~~~~~~~~~~~~~~iD~~S~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~p~~i~tD~g~~f~~~ 82 (120)
T PF00665_consen 8 RWQIDFTPMPIPDKGGRVYLLVFIDDYSRF-IYAFPVSSKETAEAALRALKRAIEKRG----GRPPRVIRTDNGSEFTSH 82 (120)
T ss_dssp EEEEEEEEETGGCTT-CEEEEEEEETTTTE-EEEEEESSSSHHHHHHHHHHHHHHHHS-----SE-SEEEEESCHHHHSH
T ss_pred EEEEeeEEEecCCCCccEEEEEEEECCCCc-EEEEEeecccccccccccccccccccc----cccceecccccccccccc
Confidence 7999999433 2233378888999986554 567777777676665555544444332 112899999999887543
No 15
>PF03106 WRKY: WRKY DNA -binding domain; InterPro: IPR003657 The WRKY domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger- like motif. The WRKY domain is found in one or two copies in a superfamily of plant transcription factors involved in the regulation of various physiological programs that are unique to plants, including pathogen defence, senescence, trichome development and the biosynthesis of secondary metabolites. The WRKY domain binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core of the W box is essential for function and WRKY binding []. Some proteins known to contain a WRKY domain include Arabidopsis thaliana ZAP1 (Zinc-dependent Activator Protein-1) and AtWRKY44/TTG2, a protein involved in trichome development and anthocyanin pigmentation; and wild oat ABF1-2, two proteins involved in the gibberelic acid-induced expression of the alpha-Amy2 gene. Structural studies indicate that this domain is a four-stranded beta-sheet with a zinc binding pocket, forming a novel zinc and DNA binding structure []. The WRKYGQK residues correspond to the most N-terminal beta-strand, which enables extensive hydrophobic interactions, contributing to the structural stability of the beta-sheet.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2AYD_A 1WJ2_A 2LEX_A.
Probab=58.74 E-value=27 Score=30.73 Aligned_cols=30 Identities=27% Similarity=0.615 Sum_probs=22.8
Q ss_pred CCceeEEEEEEeecCCcEEEEEEecccccCC
Q 001712 128 RGCTCHFIVKRLIAEPSVALIIYNDEKHVDK 158 (1021)
Q Consensus 128 ~GC~A~f~Vkrl~~~gsv~vii~~~~~Hvh~ 158 (1021)
.+|+|+=.|.+...++.+.+++|.-. |+|.
T Consensus 30 ~~C~akK~Vqr~~~d~~~~~vtY~G~-H~h~ 59 (60)
T PF03106_consen 30 PGCPAKKQVQRSADDPNIVIVTYEGE-HNHP 59 (60)
T ss_dssp TTEEEEEEEEEETTCCCEEEEEEES---SS-
T ss_pred cChhheeeEEEecCCCCEEEEEEeee-eCCC
Confidence 49999999999777888888888764 8764
No 16
>PF04937 DUF659: Protein of unknown function (DUF 659); InterPro: IPR007021 These are transposase-like proteins with no known function.
Probab=50.72 E-value=1.3e+02 Score=31.16 Aligned_cols=108 Identities=10% Similarity=0.054 Sum_probs=68.3
Q ss_pred HHHHHHHhCCCceEEEecCCCCCccCCceEEEEEEcCCCCeEEEEEEEecC-CChhhHHHHHHHHHHHhhccCCCcceeE
Q 001712 283 QLQQMIRFGNRSLLASDSRFGTNKLKYPLHSLIVFNSDKKAIPVAWVIAPS-FSSADTHRWMRALYNRVRTKDPTWNLAG 361 (1021)
Q Consensus 283 Q~~~L~rfG~~gVV~lDSThgtNky~~PL~TLlV~D~~G~giPVAf~Its~-ET~edi~~WLr~f~~~v~~k~p~~~Pk~ 361 (1021)
+++....+|- -|..|+= ++..+.+|+.+++.-..|..|.-..-.++. .+++.++..|....+.+ ++ -+.-.
T Consensus 25 ~k~~w~~~Gc--si~~DgW--td~~~~~lInf~v~~~~g~~Flksvd~s~~~~~a~~l~~ll~~vIeeV---G~-~nVvq 96 (153)
T PF04937_consen 25 HKKSWKRTGC--SIMSDGW--TDRKGRSLINFMVYCPEGTVFLKSVDASSIIKTAEYLFELLDEVIEEV---GE-ENVVQ 96 (153)
T ss_pred HHHHHHhcCE--EEEEecC--cCCCCCeEEEEEEEcccccEEEEEEecccccccHHHHHHHHHHHHHHh---hh-hhhhH
Confidence 3455566775 4888884 556677889999987766665444333332 23333444443333333 22 34567
Q ss_pred EEecCchhhHHHHHHhcCC-C---ceeehHHHHHHHHHHHh
Q 001712 362 FIVDDPSADVHTIRDVFQC-S---VLVSFWRVRHAWHKNLV 398 (1021)
Q Consensus 362 fMTD~d~Ae~nAI~~VFp~-~---~LLC~WHV~KAW~knL~ 398 (1021)
|+||.+..+..|++-.... + ..-|.-|...-..+.+.
T Consensus 97 VVTDn~~~~~~a~~~L~~k~p~ifw~~CaaH~inLmledi~ 137 (153)
T PF04937_consen 97 VVTDNASNMKKAGKLLMEKYPHIFWTPCAAHCINLMLEDIG 137 (153)
T ss_pred HhccCchhHHHHHHHHHhcCCCEEEechHHHHHHHHHHHHh
Confidence 8999999999997765543 2 57899999976666665
No 17
>PF08731 AFT: Transcription factor AFT; InterPro: IPR014842 AFT (activator of iron transcription) is an iron regulated transcriptional activator that regulates the expression of genes involved in iron homeostasis. This entry includes the paralogous pair of transcription factors AFT1 and AFT2.
Probab=42.96 E-value=82 Score=31.28 Aligned_cols=32 Identities=9% Similarity=0.138 Sum_probs=16.1
Q ss_pred CCCCceeEEEEEEeecCCcEEEEEEecccccCC
Q 001712 126 TKRGCTCHFIVKRLIAEPSVALIIYNDEKHVDK 158 (1021)
Q Consensus 126 ~k~GC~A~f~Vkrl~~~gsv~vii~~~~~Hvh~ 158 (1021)
.+.+||-.++..-- .....|-+....+.|+|+
T Consensus 79 rk~~CPFriRA~yS-~k~k~W~lvvvnn~HnH~ 110 (111)
T PF08731_consen 79 RKNTCPFRIRANYS-KKNKKWTLVVVNNEHNHP 110 (111)
T ss_pred cccCCCeEEEEEEE-ecCCeEEEEEecCCcCCC
Confidence 35556555544432 233445555444458764
No 18
>COG4715 Uncharacterized conserved protein [Function unknown]
Probab=40.72 E-value=36 Score=41.81 Aligned_cols=27 Identities=22% Similarity=0.576 Sum_probs=21.2
Q ss_pred CcceeeeccCcccCccchhHHHHHHhhc
Q 001712 578 SQFGICNCSWAEMGYLCEHLLKVIIVCR 605 (1021)
Q Consensus 578 se~~~CsC~~~~~G~lCkHilkV~~~~~ 605 (1021)
.-.++|+|++ -.+..|||+.+|..-|-
T Consensus 70 ~~ss~CTCP~-~~~gaCKH~VAvvl~~~ 96 (587)
T COG4715 70 ALSSICTCPY-GGSGACKHVVAVVLEYL 96 (587)
T ss_pred CcCceeeCCC-CCCcchHHHHHHHHHHh
Confidence 3448999998 66779999999887553
No 19
>PRK14702 insertion element IS2 transposase InsD; Provisional
Probab=39.64 E-value=1.1e+02 Score=34.25 Aligned_cols=75 Identities=15% Similarity=0.115 Sum_probs=48.3
Q ss_pred eEEEecCCCCCccCCceEEEEEEcCCCCeEEEEEEEecC-CChhhHHHHHHHHHHHhhccCCCcceeEEEecCchhh
Q 001712 295 LLASDSRFGTNKLKYPLHSLIVFNSDKKAIPVAWVIAPS-FSSADTHRWMRALYNRVRTKDPTWNLAGFIVDDPSAD 370 (1021)
Q Consensus 295 VV~lDSThgtNky~~PL~TLlV~D~~G~giPVAf~Its~-ET~edi~~WLr~f~~~v~~k~p~~~Pk~fMTD~d~Ae 370 (1021)
+++.|-||-...-+--+|..+|+|.+.+ ..|||.++.. .+.+.+...|...+...........|..|-||.-..+
T Consensus 89 ~W~~DiT~~~~~~g~~~Yl~~viD~~sR-~ivg~~is~~~~~~~~v~~~l~~A~~~~~~~~~~~~~~iihSD~Gsqy 164 (262)
T PRK14702 89 RWCSDGFEFCCDNGERLRVTFALDCCDR-EALHWAVTTGGFNSETVQDVMLGAVERRFGNDLPSSPVEWLTDNGSCY 164 (262)
T ss_pred EEEeeeEEEEecCCcEEEEEEEEecccc-eeeeEEeccCcCCHHHHHHHHHHHHHHHhcccCCCCCeEEEcCCCccc
Confidence 8999999865544556889999999866 4689999874 4555444445433332211111235677888887654
No 20
>COG3316 Transposase and inactivated derivatives [DNA replication, recombination, and repair]
Probab=39.34 E-value=93 Score=34.22 Aligned_cols=92 Identities=10% Similarity=0.059 Sum_probs=60.2
Q ss_pred eEEEecCCC-CCccCCceEEEEEEcCCCCeEEEEEEEecCCChhhHHHHHHHHHHHhhccCCCcceeEEEecCchhhHHH
Q 001712 295 LLASDSRFG-TNKLKYPLHSLIVFNSDKKAIPVAWVIAPSFSSADTHRWMRALYNRVRTKDPTWNLAGFIVDDPSADVHT 373 (1021)
Q Consensus 295 VV~lDSThg-tNky~~PL~TLlV~D~~G~giPVAf~Its~ET~edi~~WLr~f~~~v~~k~p~~~Pk~fMTD~d~Ae~nA 373 (1021)
.+.+|=||= .+.-..-||-.+ |.. |.++-+.+....+......+|..+++. . -.|.+|+||++.....|
T Consensus 72 ~w~vDEt~ikv~gkw~ylyrAi--d~~--g~~Ld~~L~~rRn~~aAk~Fl~kllk~----~--g~p~v~vtDka~s~~~A 141 (215)
T COG3316 72 SWRVDETYIKVNGKWHYLYRAI--DAD--GLTLDVWLSKRRNALAAKAFLKKLLKK----H--GEPRVFVTDKAPSYTAA 141 (215)
T ss_pred ceeeeeeEEeeccEeeehhhhh--ccC--CCeEEEEEEcccCcHHHHHHHHHHHHh----c--CCCceEEecCccchHHH
Confidence 799999993 443334444433 333 567777787776665555555444433 3 37899999999999999
Q ss_pred HHHhcCC---------CceeehHHHHHHHHHH
Q 001712 374 IRDVFQC---------SVLVSFWRVRHAWHKN 396 (1021)
Q Consensus 374 I~~VFp~---------~~LLC~WHV~KAW~kn 396 (1021)
++++-.. ..+.-.||..-.|+.+
T Consensus 142 ~~~l~~~~ehr~~~ylnN~iE~dh~~iKrr~~ 173 (215)
T COG3316 142 LRKLGSEVEHRTSKYLNNRIEQDHRPIKRRTR 173 (215)
T ss_pred HHhcCcchheecccccccchhhcchhHHHHhc
Confidence 9988762 1245566666555554
No 21
>PF13936 HTH_38: Helix-turn-helix domain; PDB: 2W48_A.
Probab=33.22 E-value=30 Score=28.27 Aligned_cols=27 Identities=26% Similarity=0.442 Sum_probs=13.3
Q ss_pred CCCCHHHHHHHHHHHHcCCChhHHHHH
Q 001712 180 PYISEDLRLRVLSLLHVGVSVETIMQR 206 (1021)
Q Consensus 180 p~ISde~R~~I~~LL~~GIs~~~Il~~ 206 (1021)
++||.++|..|..|...|.+...|-..
T Consensus 3 ~~Lt~~eR~~I~~l~~~G~s~~~IA~~ 29 (44)
T PF13936_consen 3 KHLTPEERNQIEALLEQGMSIREIAKR 29 (44)
T ss_dssp ---------HHHHHHCS---HHHHHHH
T ss_pred cchhhhHHHHHHHHHHcCCCHHHHHHH
Confidence 468999999999999999999998664
No 22
>PRK09409 IS2 transposase TnpB; Reviewed
Probab=32.02 E-value=1.6e+02 Score=33.46 Aligned_cols=76 Identities=14% Similarity=0.114 Sum_probs=47.5
Q ss_pred ceEEEecCCCCCccCCceEEEEEEcCCCCeEEEEEEEecC-CChhhHHHHHHHHHHHhhccCCCcceeEEEecCchhh
Q 001712 294 SLLASDSRFGTNKLKYPLHSLIVFNSDKKAIPVAWVIAPS-FSSADTHRWMRALYNRVRTKDPTWNLAGFIVDDPSAD 370 (1021)
Q Consensus 294 gVV~lDSThgtNky~~PL~TLlV~D~~G~giPVAf~Its~-ET~edi~~WLr~f~~~v~~k~p~~~Pk~fMTD~d~Ae 370 (1021)
.+++.|-||-...-+.-+|..+|+|.+.+ ..|||.+... .+.+.+.+.|...+...........|..|-||.-..+
T Consensus 127 ~~W~tDiT~~~~~~g~~~Yl~~ViD~~sR-~ivg~~~s~~~~~~~~v~~~l~~a~~~~~~~~~~~~~~iihSDrGsqy 203 (301)
T PRK09409 127 QRWCSDGFEFCCDNGERLRVTFALDCCDR-EALHWAVTTGGFNSETVQDVMLGAVERRFGNDLPSSPVEWLTDNGSCY 203 (301)
T ss_pred CEEEeeeEEEEeCCCCEEEEEEEeecccc-eEEEEEeccCCCCHHHHHHHHHHHHHHHhccCCCCCCcEEecCCCccc
Confidence 38999999955444555888899999866 4789999875 4555444444333332211101124567888877654
No 23
>KOG3223 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.44 E-value=35 Score=36.60 Aligned_cols=28 Identities=21% Similarity=0.388 Sum_probs=25.5
Q ss_pred CCCCCcchHHHHHHHHHhccCCCCCchh
Q 001712 609 SVKPSISLFQYNKALMDMLHCTPHDSLI 636 (1021)
Q Consensus 609 ~~~~s~~~~~~~~~l~~l~~~pp~d~~~ 636 (1021)
.-.|+|.+.||+|.|.-.|+.-||+||=
T Consensus 185 ~e~P~lrlsQ~Kqll~Kew~KsPDNP~N 212 (221)
T KOG3223|consen 185 KENPGLRLSQYKQLLKKEWQKSPDNPFN 212 (221)
T ss_pred hcCCCccHHHHHHHHHHHHhhCCCChhh
Confidence 4479999999999999999999999973
No 24
>KOG4605 consensus Uncharacterized conserved protein containing CDGSH-type Zn-finger [Function unknown]
Probab=23.22 E-value=1.4e+02 Score=29.94 Aligned_cols=46 Identities=22% Similarity=0.325 Sum_probs=28.1
Q ss_pred EEEeeccCCCccC---CCCccccCcccccccccCCCCCCCCCCceeEEEEEEeecCCcEEEEEEecc
Q 001712 90 ILYWCSFGPDDHR---KGGIVRPSRTTYVPKKKNAGRPNTKRGCTCHFIVKRLIAEPSVALIIYNDE 153 (1021)
Q Consensus 90 ~~Y~Cs~Gp~~~~---~gg~~rps~~~~~~~k~r~~Rp~~k~GC~A~f~Vkrl~~~gsv~vii~~~~ 153 (1021)
.|-||++|.--.- .|.+.-+- ..|-| |..|.|.+ ++.||+--|..+
T Consensus 57 tY~WCsCG~S~sQPfCDGsHk~~~-----~tklr----------PvrFkvek---tg~~wlCnCKqT 105 (129)
T KOG4605|consen 57 TYRWCSCGRSKSQPFCDGSHKFQG-----RTKLR----------PVRFKVEK---TGMVWLCNCKQT 105 (129)
T ss_pred EEEEEeccccCCCccccccccccc-----ccccc----------ceEeEecc---cceEEeeccccc
Confidence 6789999986652 22211111 12222 66888876 788888888775
No 25
>PF08259 Periviscerokin: Periviscerokinin family; InterPro: IPR013231 Perviscerokinin neuropeptides are found in the abdominal perisympathetic organs of insects. They mediate visceral muscle contractile activity (myotropic activity). CAPA, which are in the periviscerokinin and pyrokinin peptide families, has potential medical importance. This is due to its myotropic effects on, for example, heart muscles and due to its occurrence in the Ixodoidea (ticks), which are important vectors in the transmission of many animal diseases []. These peptides also have a strong diuretic or anti-diuretic effect, suggesting they have significant medical implications [].
Probab=22.48 E-value=33 Score=20.83 Aligned_cols=8 Identities=75% Similarity=1.310 Sum_probs=6.8
Q ss_pred eeeccccc
Q 001712 41 ALIPFARV 48 (1021)
Q Consensus 41 ~~~~~~~~ 48 (1021)
.||||-||
T Consensus 4 GlI~fpR~ 11 (11)
T PF08259_consen 4 GLIPFPRV 11 (11)
T ss_pred cccccCCC
Confidence 58999986
No 26
>PF13683 rve_3: Integrase core domain
Probab=21.29 E-value=35 Score=29.86 Aligned_cols=25 Identities=20% Similarity=0.325 Sum_probs=20.9
Q ss_pred CCCCCChHHHHhhHHHhhhhcCCcc
Q 001712 469 ASQETSAAMEFYHNQLKVRLLNEKD 493 (1021)
Q Consensus 469 ag~~TNN~iES~H~~LK~~yL~~~k 493 (1021)
+...+|..+|+||+.||..++....
T Consensus 11 ~~p~~N~~~Er~~~tlK~e~~~~~~ 35 (67)
T PF13683_consen 11 GSPQDNGKVERFNRTLKREFLYRHP 35 (67)
T ss_pred CCcccccceeeehhhhccchhcccc
Confidence 5668899999999999998877553
No 27
>KOG0417 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=20.90 E-value=92 Score=32.36 Aligned_cols=53 Identities=21% Similarity=0.307 Sum_probs=43.5
Q ss_pred eccCcccCccchhHHHHHHhhcccCCCCCCcchHHHHHHHHHhccCC-CCCchhhhhHHHHH
Q 001712 584 NCSWAEMGYLCEHLLKVIIVCRKKGSVKPSISLFQYNKALMDMLHCT-PHDSLIRDHAISLA 644 (1021)
Q Consensus 584 sC~~~~~G~lCkHilkV~~~~~~~~~~~~s~~~~~~~~~l~~l~~~p-p~d~~~~~~~~~~~ 644 (1021)
.|.....|..|--|++-. -.|.+++..-..++.+||..| |||||..|-|-.+-
T Consensus 75 HPNI~~~G~IclDILk~~--------WsPAl~i~~VllsI~sLL~~PnpddPL~~~ia~~~k 128 (148)
T KOG0417|consen 75 HPNIDSNGRICLDILKDQ--------WSPALTISKVLLSICSLLSDPNPDDPLVPDIAELYK 128 (148)
T ss_pred cCCcCccccchHHhhhcc--------CChhhHHHHHHHHHHHHhcCCCCCccccHHHHHHHH
Confidence 444568899998888743 689999999999999999998 89999988775543
Done!