Query 001712
Match_columns 1021
No_of_seqs 219 out of 288
Neff 5.0
Searched_HMMs 13730
Date Tue Mar 26 16:40:53 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001712.a3m -d /local_scratch/syshi/scop70.hhm -v 0 -o /local_scratch/syshi/H1_1009-1012//hhsearch_scop/001712hhsearch_scop
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1exqa_ c.55.3.2 (A:) Retrovir 52.6 4.5 0.00033 15.3 7.7 68 294-375 4-71 (154)
2 d1c6va_ c.55.3.2 (A:) Retrovir 39.6 7.1 0.00051 14.0 5.4 66 294-373 5-70 (159)
3 d1cxqa_ c.55.3.2 (A:) Retrovir 36.0 8.1 0.00059 13.6 8.2 68 295-371 9-76 (147)
4 d1wj2a_ g.79.1.1 (A:) WRKY DNA 25.2 12 0.00089 12.4 5.1 31 127-158 38-68 (71)
5 d1ijwc_ a.4.1.2 (C:) HIN recom 9.9 29 0.0021 10.0 4.2 28 179-206 3-30 (47)
6 d2nlua1 b.34.9.2 (A:1-100) Hep 5.3 66 0.0048 7.7 1.5 20 17-36 7-26 (100)
7 d1s5qb_ a.59.1.1 (B:) Sin3A {M 4.5 80 0.0058 7.1 5.0 76 364-454 10-87 (89)
8 d1btka_ b.55.1.1 (A:) Bruton's 4.5 80 0.0058 7.1 3.3 32 334-365 115-149 (169)
9 d1khca_ b.34.9.2 (A:) DNA meth 3.7 1E+02 0.0075 6.4 1.6 18 18-35 7-24 (137)
10 d2daqa1 b.34.9.2 (A:8-104) His 3.7 1E+02 0.0075 6.4 1.3 15 19-33 1-15 (97)
No 1
>d1exqa_ c.55.3.2 (A:) Retroviral integrase, catalytic domain {Human immunodeficiency virus type 1 [TaxId: 11676]}
Probab=52.57 E-value=4.5 Score=15.25 Aligned_cols=68 Identities=18% Similarity=0.149 Sum_probs=45.4
Q ss_pred CEEEEECCCCCCCCCCCEEEEEEECCCCCEEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHH
Q ss_conf 26999367788756975089999969997589999993189815599999999998642499731239996186454887
Q 001712 294 SLLASDSRFGTNKLKYPLHSLIVFNSDKKAIPVAWVIAPSFSSADTHRWMRALYNRVRTKDPTWNLAGFIVDDPSADVHT 373 (1021)
Q Consensus 294 gVI~iDSThgtNky~~PL~TLiV~D~~G~giPVAf~Its~ET~edi~~WLr~ll~~i~~k~p~~~Pk~fMTD~d~Ae~nA 373 (1021)
|++.+|.||--++ |.|+++|.+-+ +..++.+.+ .+++.+..+|..++.. ..|+.|.+|....+.++
T Consensus 4 g~W~~D~~~~~~k-----~ilv~vD~~Sr-~~~~~~~~~-~~~~~v~~~l~~~~~~-------~~p~~I~sDnG~eF~s~ 69 (154)
T d1exqa_ 4 GIWQLDCTHLEGK-----VILVAVHVASG-YIEAEVIPA-ETGQETAYFLLKLAGR-------WPVKTIHTDNGSNFTGA 69 (154)
T ss_dssp GEEEEEEEEETTE-----EEEEEEETTTT-EEEEEEESS-SSHHHHHHHHHHHHHH-------SCCCEEECCCCGGGTSH
T ss_pred CCEEEEEEEECCE-----EEEEEEECCCC-CEEEEEECC-CCHHHHHHHHHHHEEC-------CCCCEEEECCCCCCCCH
T ss_conf 8556678988997-----99999987688-299998567-4357777655221102-------68878997488431223
Q ss_pred HH
Q ss_conf 88
Q 001712 374 IR 375 (1021)
Q Consensus 374 I~ 375 (1021)
.-
T Consensus 70 ~~ 71 (154)
T d1exqa_ 70 TV 71 (154)
T ss_dssp HH
T ss_pred HH
T ss_conf 44
No 2
>d1c6va_ c.55.3.2 (A:) Retroviral integrase, catalytic domain {Simian immunodeficiency virus [TaxId: 11723]}
Probab=39.63 E-value=7.1 Score=13.97 Aligned_cols=66 Identities=14% Similarity=0.153 Sum_probs=40.2
Q ss_pred CEEEEECCCCCCCCCCCEEEEEEECCCCCEEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHH
Q ss_conf 26999367788756975089999969997589999993189815599999999998642499731239996186454887
Q 001712 294 SLLASDSRFGTNKLKYPLHSLIVFNSDKKAIPVAWVIAPSFSSADTHRWMRALYNRVRTKDPTWNLAGFIVDDPSADVHT 373 (1021)
Q Consensus 294 gVI~iDSThgtNky~~PL~TLiV~D~~G~giPVAf~Its~ET~edi~~WLr~ll~~i~~k~p~~~Pk~fMTD~d~Ae~nA 373 (1021)
|++.+|.||--++ +.++++|.+ ..+.+|+.+.+ .++..+..+|..+ +. . +.|..+.+|....+.+.
T Consensus 5 g~W~~D~t~~~~k-----~il~~vD~~-Sr~~~~~~~~~-~~a~~v~~~l~~~---~~-~---~~~~~I~sDnG~~F~~~ 70 (159)
T d1c6va_ 5 GTWQMDCTHLEGK-----IVIVAVHVA-SGFIEAEVIPQ-ETGRQTALFLLKL---AG-R---WPITHLHTDNGANFASQ 70 (159)
T ss_dssp TEEEEEEEEETTE-----EEEEEECTT-SCCEEEEECSS-CSHHHHHHHHHHH---HT-T---SCCCEEECCCCSSTTSS
T ss_pred CCEEEEEEEECCE-----EEEEEEECC-CCEEEEEEEEC-CCHHHHHHHHHHH---HH-C---CCCCEEEECCCCCCCCC
T ss_conf 8640699998998-----999999778-98199999606-6789999999987---63-1---58740574478743331
No 3
>d1cxqa_ c.55.3.2 (A:) Retroviral integrase, catalytic domain {Rous sarcoma virus RSV [TaxId: 11886]}
Probab=35.95 E-value=8.1 Score=13.60 Aligned_cols=68 Identities=9% Similarity=0.009 Sum_probs=42.8
Q ss_pred EEEEECCCCCCCCCCCEEEEEEECCCCCEEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHH
Q ss_conf 69993677887569750899999699975899999931898155999999999986424997312399961864548
Q 001712 295 LLASDSRFGTNKLKYPLHSLIVFNSDKKAIPVAWVIAPSFSSADTHRWMRALYNRVRTKDPTWNLAGFIVDDPSADV 371 (1021)
Q Consensus 295 VI~iDSThgtNky~~PL~TLiV~D~~G~giPVAf~Its~ET~edi~~WLr~ll~~i~~k~p~~~Pk~fMTD~d~Ae~ 371 (1021)
++.+|-||-....+.. |.++++|.+-+. ..++ .+.+++...+..+|..++.... .|+.+.+|....+.
T Consensus 9 ~w~~D~~~~~~~~~~~-~l~v~vD~~Sr~-i~~~-~~~~~t~~~~~~~l~~~~~~~g------~p~~i~sDnG~~F~ 76 (147)
T d1cxqa_ 9 IWQTDFTLEPRMAPRS-WLAVTVDTASSA-IVVT-QHGRVTSVAAQHHWATAIAVLG------RPKAIKTDNGSCFT 76 (147)
T ss_dssp EEEEEEEECGGGTTSC-EEEEEEETTTCC-EEEE-EESSCCHHHHHHHHHHHHHHHC------CCSEEECCSCHHHH
T ss_pred EEEEEEEEECCCCCEE-EEEEEEECCCCE-ECCC-CCCCCCHHHHHHHHHHHHHHHC------CCEEEEECCCCCCC
T ss_conf 7989999806789808-999999354655-3111-1576156999999999999739------98288961443321
No 4
>d1wj2a_ g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=25.24 E-value=12 Score=12.43 Aligned_cols=31 Identities=23% Similarity=0.486 Sum_probs=24.3
Q ss_pred CCCCEEEEEEEEEECCCCEEEEEEECCCCCCC
Q ss_conf 78850499999955199289999932666678
Q 001712 127 KRGCTCHFIVKRLIAEPSVALIIYNDEKHVDK 158 (1021)
Q Consensus 127 k~GC~A~f~Vkrl~~~gsv~viiy~~~~Hvh~ 158 (1021)
..||+|+=.|.+...++.+.++.|.-. |+|.
T Consensus 38 ~~~C~a~K~Vqr~~~d~~~~~vtY~G~-H~h~ 68 (71)
T d1wj2a_ 38 TPGCGVRKHVERAATDPKAVVTTYEGK-HNHD 68 (71)
T ss_dssp CSSCEEEEEEEEETTTTSEEEEEEESC-CSSC
T ss_pred CCCCCCCCEEEEECCCCCEEEEEEEEE-ECCC
T ss_conf 147987442888769999999998357-0898
No 5
>d1ijwc_ a.4.1.2 (C:) HIN recombinase (DNA-binding domain) {Synthetic}
Probab=9.93 E-value=29 Score=10.00 Aligned_cols=28 Identities=14% Similarity=0.134 Sum_probs=24.3
Q ss_pred CCCCCHHHHHHHHHHHHCCCCHHHHHHH
Q ss_conf 6778989999999999769994689989
Q 001712 179 APYISEDLRLRVLSLLHVGVSVETIMQR 206 (1021)
Q Consensus 179 ~p~IS~e~R~~I~~lL~~GIs~~~Il~~ 206 (1021)
.|.|++++.+.+..|+..|.+...|-..
T Consensus 3 ~~~lt~~q~~~a~~l~~~G~s~~~iA~~ 30 (47)
T d1ijwc_ 3 PRAINKHEQEQISRLLEKGHPRQQLAII 30 (47)
T ss_dssp CCSSCHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 8859999999999999889979999999
No 6
>d2nlua1 b.34.9.2 (A:1-100) Hepatoma-derived growth factor, HDGF {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.28 E-value=66 Score=7.67 Aligned_cols=20 Identities=30% Similarity=0.542 Sum_probs=15.6
Q ss_pred CCCCCCCCCEEEEECCCCCC
Q ss_conf 74442355036643254458
Q 001712 17 TLEFASVDLVWSKVEGWRDK 36 (1021)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~ 36 (1021)
..+|.--||+|.|+.|+.-=
T Consensus 7 ~~~f~~GdlVWaK~~gypwW 26 (100)
T d2nlua1 7 QKEYKCGDLVFAKMKGYPHW 26 (100)
T ss_dssp CCCCSTTCEEEEEETTEEEE
T ss_pred CCCCCCCCEEEEECCCCCCC
T ss_conf 77587688999966897999
No 7
>d1s5qb_ a.59.1.1 (B:) Sin3A {Mouse (Mus musculus) [TaxId: 10090]}
Probab=4.53 E-value=80 Score=7.13 Aligned_cols=76 Identities=16% Similarity=0.296 Sum_probs=37.4
Q ss_pred ECCCHHHHHHHHHHCCC-C-CEEEHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCC
Q ss_conf 61864548878874188-8-042157899999998852112323499999999999860037987399999999992285
Q 001712 364 VDDPSADVHTIRDVFQC-S-VLVSFWRVRHAWHKNLVKRCSEIGMRAEIFRCLGVAVDDICKGHGTIALFENCMEDFMDG 441 (1021)
Q Consensus 364 TD~d~Ae~nAI~~VFp~-~-iLLC~WHV~KAW~knL~kk~~~~e~q~eIyk~L~~Ll~stte~~~~~~~le~fl~~f~d~ 441 (1021)
.+++.++.+.+++.|.+ + +.--+-.|++.+++..... ...+..........+.+++....|.++
T Consensus 10 ~~~A~~yl~kVK~~f~d~p~~Y~~FL~il~~f~~~~~~~--------------~~~~~~~~~~~~~~~v~~rV~~Lf~~h 75 (89)
T d1s5qb_ 10 FNHAINYVNKIKNRFQGQPDIYKAFLEILHTYQKEQRNA--------------KEAGGNYTPALTEQEVYAQVARLFKNQ 75 (89)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHH--------------HHSCSCCCCSCCHHHHHHHHHHHSCSC
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCC--------------CCCCCCCCCCCCHHHHHHHHHHHHCCC
T ss_conf 999999999999998158599999999999999730011--------------100121223466999999999998548
Q ss_pred HHHHHHHHHHCCC
Q ss_conf 3799999976034
Q 001712 442 SDFMDYFKAVWYP 454 (1021)
Q Consensus 442 ~~F~eYFks~Wlp 454 (1021)
+..+.-|.. |+|
T Consensus 76 pdLi~~Fn~-FLP 87 (89)
T d1s5qb_ 76 EDLLSEFGQ-FLP 87 (89)
T ss_dssp HHHHHHHHH-HSC
T ss_pred HHHHHHHHH-HCC
T ss_conf 799998996-687
No 8
>d1btka_ b.55.1.1 (A:) Bruton's tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.51 E-value=80 Score=7.12 Aligned_cols=32 Identities=19% Similarity=0.279 Sum_probs=20.8
Q ss_pred CCHHHHHHHHHHHHHHHHCC---CCCCCEEEEEEC
Q ss_conf 98155999999999986424---997312399961
Q 001712 334 FSSADTHRWMRALYNRVRTK---DPTWNLAGFIVD 365 (1021)
Q Consensus 334 ET~edi~~WLr~ll~~i~~k---~p~~~Pk~fMTD 365 (1021)
++.++...|+.++-..+... ...++|..+...
T Consensus 115 ~s~eE~~~WI~aL~~~i~~~~~~~~~~h~~~~~~~ 149 (169)
T d1btka_ 115 PTEELRKRWIHQLKNVIRYNSDLVQKYHPCFWIDG 149 (169)
T ss_dssp SCHHHHHHHHHHHHHHHTTCSCCCSEECSSCEETT
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
T ss_conf 99999999999999999868020223383500589
No 9
>d1khca_ b.34.9.2 (A:) DNA methyltransferase DNMT3B {Mouse (Mus musculus) [TaxId: 10090]}
Probab=3.67 E-value=1e+02 Score=6.39 Aligned_cols=18 Identities=44% Similarity=0.795 Sum_probs=12.3
Q ss_pred CCCCCCCCEEEEECCCCC
Q ss_conf 444235503664325445
Q 001712 18 LEFASVDLVWSKVEGWRD 35 (1021)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~ 35 (1021)
-+|+--||+|.|+.|..-
T Consensus 7 ~~f~~GdlVWaK~~g~pw 24 (137)
T d1khca_ 7 KEFGIGDLVWGKIKGFSW 24 (137)
T ss_dssp SSCCTTCEEEEEETTTEE
T ss_pred CCCCCCCEEEEECCCCCC
T ss_conf 757668889984689799
No 10
>d2daqa1 b.34.9.2 (A:8-104) Histone-lysine N-methyltransferase NSD3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.66 E-value=1e+02 Score=6.39 Aligned_cols=15 Identities=20% Similarity=0.618 Sum_probs=0.0
Q ss_pred CCCCCCCEEEEECCC
Q ss_conf 442355036643254
Q 001712 19 EFASVDLVWSKVEGW 33 (1021)
Q Consensus 19 ~~~~~~~~~~~~~~~ 33 (1021)
.|.--||+|.|+.|+
T Consensus 1 k~~~GdlVWaK~~g~ 15 (97)
T d2daqa1 1 KLHYKQIVWVKLGNY 15 (97)
T ss_dssp SCCSSEEEEEECSSS
T ss_pred CCCCCCEEEEECCCC
T ss_conf 986797999973896
Done!