Query 001713
Match_columns 1021
No_of_seqs 479 out of 3290
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 07:33:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001713.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001713hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0450 2-oxoglutarate dehydro 100.0 6E-272 1E-276 2268.4 75.9 941 51-1017 35-1016(1017)
2 PRK12270 kgd alpha-ketoglutara 100.0 1E-233 2E-238 2031.7 80.4 888 66-1013 331-1227(1228)
3 TIGR00239 2oxo_dh_E1 2-oxoglut 100.0 3E-230 7E-235 2066.9 90.9 898 66-1012 1-929 (929)
4 COG0567 SucA 2-oxoglutarate de 100.0 4E-231 8E-236 2024.7 66.7 895 62-1014 5-906 (906)
5 PRK09404 sucA 2-oxoglutarate d 100.0 5E-228 1E-232 2057.4 91.4 898 63-1013 10-924 (924)
6 KOG0451 Predicted 2-oxoglutara 100.0 3E-202 7E-207 1667.2 49.1 849 117-1013 52-913 (913)
7 cd02016 TPP_E1_OGDC_like Thiam 100.0 1.1E-75 2.4E-80 632.9 23.1 265 249-516 1-265 (265)
8 COG1071 AcoA Pyruvate/2-oxoglu 100.0 5E-66 1.1E-70 574.2 30.0 316 229-581 22-346 (358)
9 PLN02269 Pyruvate dehydrogenas 100.0 5.5E-62 1.2E-66 550.3 32.6 310 229-579 25-343 (362)
10 PF00676 E1_dh: Dehydrogenase 100.0 2.5E-62 5.4E-67 542.9 23.7 290 241-569 1-299 (300)
11 PLN02374 pyruvate dehydrogenas 100.0 1E-60 2.2E-65 549.6 32.4 318 229-580 81-408 (433)
12 TIGR03182 PDH_E1_alph_y pyruva 100.0 3E-60 6.6E-65 529.7 30.7 306 233-577 1-314 (315)
13 COG0022 AcoB Pyruvate/2-oxoglu 100.0 1.6E-60 3.4E-65 511.9 25.7 308 636-1012 2-319 (324)
14 KOG0225 Pyruvate dehydrogenase 100.0 4.8E-60 1E-64 508.2 25.3 309 229-579 54-371 (394)
15 CHL00149 odpA pyruvate dehydro 100.0 2.7E-58 5.9E-63 518.3 32.2 316 229-578 15-340 (341)
16 cd02000 TPP_E1_PDC_ADC_BCADC T 100.0 1.5E-55 3.3E-60 487.7 29.2 285 239-562 1-293 (293)
17 TIGR03181 PDH_E1_alph_x pyruva 100.0 1.4E-53 3.1E-58 480.6 31.4 303 229-580 19-330 (341)
18 PRK12315 1-deoxy-D-xylulose-5- 100.0 1.4E-51 3.1E-56 492.9 47.8 551 221-1012 4-577 (581)
19 TIGR00204 dxs 1-deoxy-D-xylulo 100.0 5.1E-47 1.1E-51 456.2 38.9 450 361-1011 108-612 (617)
20 KOG1182 Branched chain alpha-k 100.0 7.7E-49 1.7E-53 417.5 19.7 332 207-581 64-404 (432)
21 KOG0524 Pyruvate dehydrogenase 100.0 9.7E-47 2.1E-51 395.5 22.3 311 633-1011 32-354 (359)
22 KOG0525 Branched chain alpha-k 100.0 1.3E-47 2.7E-52 396.6 15.3 309 634-1011 39-356 (362)
23 PRK05444 1-deoxy-D-xylulose-5- 100.0 1.8E-43 3.9E-48 424.1 38.3 449 361-1012 114-577 (580)
24 PRK12571 1-deoxy-D-xylulose-5- 100.0 3.3E-41 7E-46 407.3 47.3 450 364-1012 119-624 (641)
25 PLN02234 1-deoxy-D-xylulose-5- 100.0 5.9E-42 1.3E-46 409.1 37.8 421 360-969 173-621 (641)
26 PLN02582 1-deoxy-D-xylulose-5- 100.0 8.7E-41 1.9E-45 402.1 41.3 444 361-998 141-645 (677)
27 PRK05899 transketolase; Review 100.0 3.4E-39 7.4E-44 390.3 37.2 438 361-958 115-580 (624)
28 PLN02225 1-deoxy-D-xylulose-5- 100.0 1.8E-38 3.8E-43 379.7 34.5 421 363-997 188-668 (701)
29 PTZ00182 3-methyl-2-oxobutanat 100.0 6.7E-39 1.5E-43 362.8 28.6 307 635-1012 34-352 (355)
30 CHL00144 odpB pyruvate dehydro 100.0 1.5E-38 3.2E-43 356.8 27.9 306 636-1013 4-321 (327)
31 PRK11892 pyruvate dehydrogenas 100.0 2E-38 4.4E-43 368.7 27.4 304 637-1011 143-458 (464)
32 PLN02683 pyruvate dehydrogenas 100.0 1.2E-37 2.7E-42 352.7 27.3 313 634-1014 25-349 (356)
33 TIGR00232 tktlase_bact transke 100.0 3.7E-35 8E-40 355.7 42.4 467 359-954 105-606 (653)
34 PRK09212 pyruvate dehydrogenas 100.0 3.3E-36 7.1E-41 338.1 27.0 305 636-1012 4-320 (327)
35 PRK12753 transketolase; Review 100.0 5.9E-32 1.3E-36 327.8 42.4 467 361-952 111-614 (663)
36 PLN02790 transketolase 100.0 8.7E-32 1.9E-36 326.5 41.8 475 359-959 100-611 (654)
37 PTZ00089 transketolase; Provis 100.0 3.8E-32 8.3E-37 329.9 38.1 450 360-937 112-595 (661)
38 COG1154 Dxs Deoxyxylulose-5-ph 100.0 3.9E-31 8.5E-36 305.8 35.6 435 363-992 114-596 (627)
39 PRK12754 transketolase; Review 100.0 1E-30 2.3E-35 315.6 38.7 448 360-932 110-592 (663)
40 TIGR03186 AKGDH_not_PDH alpha- 100.0 1.4E-25 3E-30 274.3 37.9 503 363-987 188-828 (889)
41 KOG0523 Transketolase [Carbohy 99.9 3.2E-25 7E-30 255.5 30.8 442 364-959 118-574 (632)
42 PF02779 Transket_pyr: Transke 99.9 4.8E-26 1E-30 235.1 13.1 177 634-850 1-178 (178)
43 PRK09405 aceE pyruvate dehydro 99.9 5.8E-22 1.3E-26 242.8 50.3 493 366-987 197-831 (891)
44 PRK13012 2-oxoacid dehydrogena 99.9 3E-21 6.5E-26 237.4 48.5 454 364-935 203-779 (896)
45 cd07036 TPP_PYR_E1-PDHc-beta_l 99.9 6.7E-24 1.4E-28 217.4 13.7 158 641-844 2-167 (167)
46 COG3958 Transketolase, C-termi 99.9 1.1E-20 2.4E-25 203.6 20.0 261 645-988 16-282 (312)
47 COG0021 TktA Transketolase [Ca 99.9 3.4E-19 7.4E-24 208.3 32.7 468 364-962 116-622 (663)
48 PRK05261 putative phosphoketol 99.9 8.6E-19 1.9E-23 213.0 37.2 526 265-923 48-650 (785)
49 cd07033 TPP_PYR_DXS_TK_like Py 99.8 2.5E-18 5.5E-23 174.3 13.3 151 642-844 3-156 (156)
50 smart00861 Transket_pyr Transk 99.7 1.5E-17 3.3E-22 169.9 15.6 163 637-844 1-167 (168)
51 cd02007 TPP_DXS Thiamine pyrop 99.7 1E-16 2.3E-21 168.4 11.7 119 361-501 72-194 (195)
52 cd02012 TPP_TK Thiamine pyroph 99.6 9.5E-16 2.1E-20 167.3 11.8 130 361-504 102-234 (255)
53 TIGR00759 aceE pyruvate dehydr 99.6 1.8E-11 3.8E-16 150.0 42.0 465 363-933 188-766 (885)
54 cd02011 TPP_PK Thiamine pyroph 99.5 3.3E-14 7.2E-19 151.7 12.5 170 266-485 2-175 (227)
55 PF00456 Transketolase_N: Tran 99.5 9.5E-14 2.1E-18 156.7 11.8 132 362-503 109-249 (332)
56 PRK11864 2-ketoisovalerate fer 99.4 1.8E-12 3.8E-17 144.0 16.9 165 295-496 14-206 (300)
57 COG3959 Transketolase, N-termi 99.4 1.1E-12 2.5E-17 137.4 13.1 126 359-498 114-242 (243)
58 cd02017 TPP_E1_EcPDC_like Thia 99.4 3.2E-12 7E-17 145.4 13.1 133 362-503 116-323 (386)
59 cd00568 TPP_enzymes Thiamine p 99.2 3.7E-11 8.1E-16 121.7 7.8 110 363-496 45-168 (168)
60 cd02002 TPP_BFDC Thiamine pyro 99.1 1.5E-10 3.2E-15 119.4 9.7 110 364-496 49-178 (178)
61 PF02780 Transketolase_C: Tran 99.1 2.1E-11 4.6E-16 118.9 2.8 102 885-992 3-107 (124)
62 TIGR03336 IOR_alpha indolepyru 99.1 4.6E-09 1E-13 127.9 22.2 253 707-1003 54-330 (595)
63 cd02013 TPP_Xsc_like Thiamine 99.1 1.2E-10 2.6E-15 122.6 7.1 117 364-500 53-182 (196)
64 cd03372 TPP_ComE Thiamine pyro 99.1 5.5E-10 1.2E-14 116.1 11.8 112 364-499 42-157 (179)
65 cd02004 TPP_BZL_OCoD_HPCL Thia 99.1 3.5E-10 7.5E-15 116.3 9.8 109 364-496 48-171 (172)
66 cd02014 TPP_POX Thiamine pyrop 99.0 6E-10 1.3E-14 115.4 8.9 112 364-498 51-174 (178)
67 cd02015 TPP_AHAS Thiamine pyro 99.0 2.2E-09 4.8E-14 111.9 9.9 112 364-498 50-175 (186)
68 cd02006 TPP_Gcl Thiamine pyrop 98.9 1.2E-09 2.7E-14 115.3 7.0 115 364-497 57-194 (202)
69 cd02008 TPP_IOR_alpha Thiamine 98.9 3.9E-09 8.5E-14 109.4 10.3 114 363-496 50-176 (178)
70 PF02775 TPP_enzyme_C: Thiamin 98.9 1.1E-09 2.5E-14 110.3 5.2 111 363-494 27-153 (153)
71 PRK07524 hypothetical protein; 98.9 3.5E-09 7.5E-14 127.3 9.5 115 364-501 407-533 (535)
72 PRK07119 2-ketoisovalerate fer 98.9 1.1E-07 2.3E-12 109.1 21.0 219 701-952 51-307 (352)
73 cd03371 TPP_PpyrDC Thiamine py 98.9 6.4E-09 1.4E-13 109.1 10.1 131 364-518 48-182 (188)
74 cd02005 TPP_PDC_IPDC Thiamine 98.9 6.1E-09 1.3E-13 108.6 9.8 114 364-498 50-175 (183)
75 cd02001 TPP_ComE_PpyrDC Thiami 98.9 7.6E-09 1.7E-13 105.5 9.8 111 364-496 42-154 (157)
76 cd02010 TPP_ALS Thiamine pyrop 98.8 8.6E-09 1.9E-13 107.0 8.8 112 364-498 48-171 (177)
77 PRK06163 hypothetical protein; 98.8 2.4E-08 5.3E-13 105.9 12.0 112 364-498 57-174 (202)
78 cd02003 TPP_IolD Thiamine pyro 98.8 6.2E-09 1.3E-13 110.4 6.7 112 364-498 48-185 (205)
79 PRK08327 acetolactate synthase 98.8 1.5E-08 3.3E-13 122.8 10.6 115 364-496 430-566 (569)
80 PRK06725 acetolactate synthase 98.8 1.6E-08 3.4E-13 122.7 10.4 111 364-497 422-545 (570)
81 cd02009 TPP_SHCHC_synthase Thi 98.8 1.8E-08 4E-13 104.2 8.2 109 364-496 51-174 (175)
82 PRK08366 vorA 2-ketoisovalerat 98.8 4.1E-07 8.8E-12 105.5 20.0 225 705-966 55-333 (390)
83 TIGR03846 sulfopy_beta sulfopy 98.7 2.9E-08 6.3E-13 103.6 9.5 109 364-497 42-156 (181)
84 cd03375 TPP_OGFOR Thiamine pyr 98.7 4E-08 8.7E-13 103.5 10.3 113 364-496 51-183 (193)
85 cd03376 TPP_PFOR_porB_like Thi 98.7 2.6E-08 5.5E-13 108.1 8.1 115 362-496 60-199 (235)
86 PRK09622 porA pyruvate flavodo 98.7 3.1E-07 6.7E-12 107.2 17.5 220 707-962 64-338 (407)
87 PF13292 DXP_synthase_N: 1-deo 98.7 2.8E-08 6.2E-13 107.9 8.0 118 363-496 110-270 (270)
88 PRK06546 pyruvate dehydrogenas 98.7 4.3E-08 9.3E-13 119.2 10.4 110 364-496 408-529 (578)
89 PRK09627 oorA 2-oxoglutarate-a 98.7 8.4E-07 1.8E-11 102.5 20.3 215 707-952 55-335 (375)
90 PRK09628 oorB 2-oxoglutarate-a 98.7 5.2E-08 1.1E-12 108.0 9.3 111 366-496 70-200 (277)
91 PRK08659 2-oxoglutarate ferred 98.7 6.9E-07 1.5E-11 103.3 18.8 222 700-952 50-334 (376)
92 PRK07092 benzoylformate decarb 98.7 5E-08 1.1E-12 117.3 9.8 109 364-496 407-529 (530)
93 cd02018 TPP_PFOR Thiamine pyro 98.6 7E-08 1.5E-12 104.8 8.6 119 364-496 64-202 (237)
94 PRK08266 hypothetical protein; 98.6 1E-07 2.2E-12 114.9 10.3 116 364-502 402-530 (542)
95 PRK06154 hypothetical protein; 98.6 9.6E-08 2.1E-12 115.9 9.7 113 364-496 431-554 (565)
96 PRK12474 hypothetical protein; 98.6 1.2E-07 2.7E-12 113.7 10.6 110 364-496 389-518 (518)
97 PRK05778 2-oxoglutarate ferred 98.6 2.4E-07 5.1E-12 103.9 11.4 121 364-504 70-212 (301)
98 PRK11269 glyoxylate carboligas 98.6 1.2E-07 2.6E-12 115.6 9.7 115 364-497 419-556 (591)
99 PRK07525 sulfoacetaldehyde ace 98.6 1.3E-07 2.8E-12 115.3 9.1 115 364-498 435-563 (588)
100 TIGR02720 pyruv_oxi_spxB pyruv 98.6 1.4E-07 3.1E-12 114.6 9.5 112 364-496 408-531 (575)
101 COG0028 IlvB Thiamine pyrophos 98.6 1E-07 2.3E-12 114.9 8.0 113 364-499 408-533 (550)
102 PRK07586 hypothetical protein; 98.6 1.8E-07 4E-12 112.0 9.8 110 364-496 385-514 (514)
103 PRK07064 hypothetical protein; 98.5 2.1E-07 4.5E-12 112.3 10.3 111 364-497 405-528 (544)
104 TIGR01504 glyox_carbo_lig glyo 98.5 9.2E-08 2E-12 116.6 7.1 114 364-496 418-554 (588)
105 PRK09124 pyruvate dehydrogenas 98.5 2.1E-07 4.6E-12 113.0 9.9 111 364-497 408-530 (574)
106 TIGR03297 Ppyr-DeCO2ase phosph 98.5 4.3E-07 9.4E-12 104.3 11.5 113 364-498 221-337 (361)
107 PRK08155 acetolactate synthase 98.5 2.6E-07 5.6E-12 112.1 9.9 111 364-497 419-543 (564)
108 PRK11869 2-oxoacid ferredoxin 98.5 2.8E-07 6.1E-12 102.3 9.3 110 366-496 62-192 (280)
109 PRK06112 acetolactate synthase 98.5 2.6E-07 5.7E-12 112.3 9.8 111 364-497 437-560 (578)
110 TIGR03457 sulphoacet_xsc sulfo 98.5 2.7E-07 5.8E-12 112.3 9.6 114 364-497 430-557 (579)
111 PRK05858 hypothetical protein; 98.5 1.9E-07 4E-12 112.8 8.0 110 364-496 407-529 (542)
112 TIGR02418 acolac_catab acetola 98.5 3.4E-07 7.5E-12 110.3 10.3 112 364-498 408-531 (539)
113 PRK09107 acetolactate synthase 98.5 3.2E-07 6.9E-12 112.0 9.5 112 364-498 430-555 (595)
114 TIGR03710 OAFO_sf 2-oxoacid:ac 98.5 3.9E-06 8.4E-11 101.9 18.7 221 706-955 244-526 (562)
115 PRK06457 pyruvate dehydrogenas 98.5 4.6E-07 9.9E-12 109.6 10.6 112 364-497 396-519 (549)
116 PRK08199 thiamine pyrophosphat 98.5 4.4E-07 9.5E-12 109.9 10.4 112 364-498 415-539 (557)
117 PRK07710 acetolactate synthase 98.5 3.8E-07 8.2E-12 110.8 9.8 112 364-498 424-549 (571)
118 PRK06882 acetolactate synthase 98.5 4.3E-07 9.4E-12 110.3 10.3 113 364-498 421-547 (574)
119 PRK07418 acetolactate synthase 98.5 2.4E-07 5.2E-12 113.5 7.8 112 363-497 433-559 (616)
120 PLN02573 pyruvate decarboxylas 98.5 3.5E-07 7.6E-12 111.3 8.9 112 364-496 428-551 (578)
121 COG3957 Phosphoketolase [Carbo 98.5 3.6E-05 7.8E-10 92.4 25.2 230 646-930 411-670 (793)
122 PRK08322 acetolactate synthase 98.4 4.9E-07 1.1E-11 109.1 9.8 111 364-497 406-528 (547)
123 CHL00099 ilvB acetohydroxyacid 98.4 5.5E-07 1.2E-11 109.7 10.3 111 364-497 430-555 (585)
124 PRK11865 pyruvate ferredoxin o 98.4 3.4E-06 7.3E-11 94.4 15.2 123 364-503 69-219 (299)
125 PRK08617 acetolactate synthase 98.4 7.4E-07 1.6E-11 107.8 10.6 112 364-498 414-537 (552)
126 PRK11866 2-oxoacid ferredoxin 98.4 6.7E-07 1.4E-11 99.3 9.3 112 364-496 59-191 (279)
127 PRK08527 acetolactate synthase 98.4 7.4E-07 1.6E-11 108.1 10.5 112 364-498 414-539 (563)
128 PRK08367 porA pyruvate ferredo 98.4 8.8E-06 1.9E-10 94.7 18.8 228 706-970 57-339 (394)
129 PRK07979 acetolactate synthase 98.4 6.3E-07 1.4E-11 109.0 9.6 114 364-497 421-548 (574)
130 TIGR00118 acolac_lg acetolacta 98.4 5.4E-07 1.2E-11 109.1 8.8 112 364-498 412-537 (558)
131 PRK06466 acetolactate synthase 98.4 6.1E-07 1.3E-11 109.0 9.2 113 364-498 423-549 (574)
132 PRK06456 acetolactate synthase 98.4 6.3E-07 1.4E-11 108.9 9.2 112 364-498 421-546 (572)
133 TIGR03393 indolpyr_decarb indo 98.4 5.1E-07 1.1E-11 109.0 8.3 110 364-496 404-526 (539)
134 PRK08611 pyruvate oxidase; Pro 98.4 7.9E-07 1.7E-11 108.2 9.8 112 364-498 408-531 (576)
135 PRK06276 acetolactate synthase 98.4 1E-06 2.2E-11 107.5 9.9 110 364-496 419-542 (586)
136 PRK08978 acetolactate synthase 98.4 8.9E-07 1.9E-11 107.0 9.2 112 364-498 401-526 (548)
137 PLN02470 acetolactate synthase 98.4 1.2E-06 2.7E-11 106.7 10.3 111 364-497 426-557 (585)
138 PRK06965 acetolactate synthase 98.4 1.2E-06 2.6E-11 106.8 10.3 112 364-497 437-562 (587)
139 PRK11867 2-oxoglutarate ferred 98.4 1.1E-06 2.3E-11 98.2 8.9 110 365-495 70-200 (286)
140 PRK06048 acetolactate synthase 98.4 1.1E-06 2.4E-11 106.5 9.8 112 364-498 414-539 (561)
141 PRK08979 acetolactate synthase 98.4 1.4E-06 3E-11 106.0 10.6 113 364-498 421-547 (572)
142 TIGR03394 indol_phenyl_DC indo 98.3 1.1E-06 2.4E-11 106.0 8.6 110 364-496 403-520 (535)
143 TIGR03254 oxalate_oxc oxalyl-C 98.3 2.1E-06 4.5E-11 104.0 11.0 109 364-496 417-537 (554)
144 PRK09259 putative oxalyl-CoA d 98.3 2.1E-06 4.6E-11 104.3 10.4 110 364-497 424-546 (569)
145 PRK07789 acetolactate synthase 98.3 1.7E-06 3.6E-11 106.1 9.4 112 364-497 447-576 (612)
146 TIGR02177 PorB_KorB 2-oxoacid: 98.3 1.4E-06 3E-11 97.2 7.7 110 366-496 55-185 (287)
147 PRK07449 2-succinyl-5-enolpyru 98.3 1E-06 2.3E-11 106.8 6.8 109 364-496 425-548 (568)
148 PRK07282 acetolactate synthase 98.3 2.3E-06 4.9E-11 104.0 9.3 111 364-498 418-542 (566)
149 PRK08273 thiamine pyrophosphat 98.2 3.7E-06 8.1E-11 102.8 10.6 112 364-498 415-547 (597)
150 TIGR03336 IOR_alpha indolepyru 98.1 7.1E-06 1.5E-10 100.3 10.2 112 364-495 403-528 (595)
151 COG4231 Indolepyruvate ferredo 98.0 0.00027 5.9E-09 84.7 20.0 251 699-995 58-338 (640)
152 PLN02980 2-oxoglutarate decarb 97.7 6.2E-05 1.4E-09 101.6 8.9 113 361-497 756-889 (1655)
153 TIGR02176 pyruv_ox_red pyruvat 97.7 0.0011 2.3E-08 86.9 19.7 217 705-958 57-331 (1165)
154 cd06586 TPP_enzyme_PYR Pyrimid 97.7 0.00021 4.6E-09 71.4 10.2 116 698-844 34-154 (154)
155 COG2609 AceE Pyruvate dehydrog 97.5 0.092 2E-06 64.1 30.4 64 372-441 200-268 (887)
156 KOG1185 Thiamine pyrophosphate 97.5 0.00046 1E-08 80.3 11.2 109 372-496 434-559 (571)
157 COG0674 PorA Pyruvate:ferredox 97.5 0.0043 9.2E-08 72.0 18.6 203 705-942 53-310 (365)
158 KOG4166 Thiamine pyrophosphate 97.3 0.00046 9.9E-09 78.8 7.4 114 364-498 524-648 (675)
159 COG3961 Pyruvate decarboxylase 97.2 0.00088 1.9E-08 78.9 8.6 116 364-498 411-536 (557)
160 PRK13029 2-oxoacid ferredoxin 97.1 0.013 2.8E-07 76.1 18.6 248 701-988 87-379 (1186)
161 PRK13030 2-oxoacid ferredoxin 97.1 0.0079 1.7E-07 78.2 16.3 261 700-1000 75-385 (1159)
162 PRK12270 kgd alpha-ketoglutara 97.1 0.00034 7.4E-09 87.0 3.9 34 68-101 4-37 (1228)
163 PF09364 XFP_N: XFP N-terminal 97.0 0.0027 5.7E-08 72.3 9.1 109 364-482 140-250 (379)
164 COG1013 PorB Pyruvate:ferredox 96.8 0.014 3E-07 65.8 12.7 114 364-496 70-203 (294)
165 PRK09193 indolepyruvate ferred 96.7 0.058 1.3E-06 70.4 19.4 254 700-995 83-387 (1165)
166 COG3960 Glyoxylate carboligase 96.3 0.0045 9.7E-08 69.1 5.2 125 360-504 415-563 (592)
167 KOG1184 Thiamine pyrophosphate 95.9 0.018 3.8E-07 68.1 7.7 115 364-496 415-538 (561)
168 COG3962 Acetolactate synthase 95.1 0.093 2E-06 61.5 9.7 111 364-496 444-574 (617)
169 cd03377 TPP_PFOR_PNO Thiamine 94.0 0.37 8.1E-06 55.8 11.2 95 392-496 152-266 (365)
170 COG4231 Indolepyruvate ferredo 93.9 0.24 5.3E-06 60.3 9.8 112 362-494 426-551 (640)
171 PF01855 POR_N: Pyruvate flavo 93.7 0.12 2.5E-06 56.6 6.1 116 705-851 42-161 (230)
172 TIGR02176 pyruv_ox_red pyruvat 90.8 1.7 3.6E-05 58.0 12.4 94 392-496 952-1066(1165)
173 PF03894 XFP: D-xylulose 5-pho 88.0 6.9 0.00015 41.2 11.9 148 653-831 16-178 (179)
174 cd07038 TPP_PYR_PDC_IPDC_like 85.7 2.9 6.2E-05 43.1 7.8 105 372-494 50-160 (162)
175 cd07035 TPP_PYR_POX_like Pyrim 83.8 8 0.00017 38.9 10.0 91 393-494 62-153 (155)
176 TIGR03297 Ppyr-DeCO2ase phosph 83.6 3.3 7.3E-05 48.3 8.0 115 706-847 33-155 (361)
177 cd06586 TPP_enzyme_PYR Pyrimid 83.1 5.6 0.00012 39.6 8.5 104 371-494 49-152 (154)
178 TIGR03845 sulfopyru_alph sulfo 82.6 7.1 0.00015 40.2 9.1 110 705-846 40-156 (157)
179 PRK08659 2-oxoglutarate ferred 82.1 5.7 0.00012 46.6 9.2 95 402-505 77-178 (376)
180 PF02776 TPP_enzyme_N: Thiamin 79.0 7.5 0.00016 40.2 8.0 93 392-494 66-159 (172)
181 cd07034 TPP_PYR_PFOR_IOR-alpha 78.9 9.2 0.0002 38.7 8.5 90 393-494 67-158 (160)
182 COG1165 MenD 2-succinyl-6-hydr 77.1 6.8 0.00015 47.7 7.8 108 366-499 424-548 (566)
183 TIGR03845 sulfopyru_alph sulfo 77.0 26 0.00056 36.2 11.1 92 392-494 59-152 (157)
184 PF01855 POR_N: Pyruvate flavo 76.2 6.9 0.00015 42.9 7.0 88 403-504 66-161 (230)
185 cd07039 TPP_PYR_POX Pyrimidine 76.2 15 0.00032 38.0 9.1 92 392-494 65-156 (164)
186 PRK13030 2-oxoacid ferredoxin 76.0 7.6 0.00016 51.6 8.4 113 363-494 467-600 (1159)
187 cd07034 TPP_PYR_PFOR_IOR-alpha 75.6 31 0.00068 34.8 11.3 115 698-842 41-158 (160)
188 PRK09193 indolepyruvate ferred 75.4 11 0.00023 50.2 9.6 113 363-494 480-614 (1165)
189 PRK09627 oorA 2-oxoglutarate-a 72.9 12 0.00026 44.0 8.3 92 402-504 76-176 (375)
190 PRK07119 2-ketoisovalerate fer 69.0 24 0.00053 41.1 9.7 107 369-504 60-177 (352)
191 KOG4166 Thiamine pyrophosphate 67.8 15 0.00032 43.4 7.3 152 307-494 89-248 (675)
192 TIGR03710 OAFO_sf 2-oxoacid:ac 67.3 19 0.00042 44.5 8.9 90 402-503 266-365 (562)
193 cd07035 TPP_PYR_POX_like Pyrim 60.5 50 0.0011 33.1 9.1 113 698-843 34-154 (155)
194 PRK09622 porA pyruvate flavodo 58.9 47 0.001 39.5 9.7 87 402-499 85-178 (407)
195 COG0075 Serine-pyruvate aminot 57.9 42 0.00092 39.7 8.9 71 888-960 77-148 (383)
196 PF02776 TPP_enzyme_N: Thiamin 56.1 60 0.0013 33.5 8.9 122 698-850 39-167 (172)
197 PRK13029 2-oxoacid ferredoxin 55.4 36 0.00077 45.6 8.5 114 362-494 493-628 (1186)
198 COG0674 PorA Pyruvate:ferredox 54.9 49 0.0011 38.8 8.9 87 402-500 76-169 (365)
199 PRK08611 pyruvate oxidase; Pro 52.2 52 0.0011 40.8 9.0 92 392-494 70-161 (576)
200 cd07037 TPP_PYR_MenD Pyrimidin 50.1 36 0.00079 35.3 6.1 94 392-494 62-160 (162)
201 PRK07525 sulfoacetaldehyde ace 49.9 77 0.0017 39.4 10.0 92 392-494 70-161 (588)
202 PRK07789 acetolactate synthase 47.7 73 0.0016 39.8 9.4 93 392-495 96-189 (612)
203 PRK08366 vorA 2-ketoisovalerat 47.0 1E+02 0.0022 36.6 9.9 88 402-500 78-170 (390)
204 PRK08367 porA pyruvate ferredo 46.7 97 0.0021 36.8 9.7 89 402-503 79-175 (394)
205 PRK07064 hypothetical protein; 46.3 68 0.0015 39.3 8.6 95 392-495 68-164 (544)
206 TIGR03457 sulphoacet_xsc sulfo 45.8 82 0.0018 39.0 9.3 93 392-495 66-158 (579)
207 COG1303 Uncharacterized protei 44.2 49 0.0011 34.5 5.7 54 440-496 13-66 (179)
208 PLN02470 acetolactate synthase 44.0 59 0.0013 40.3 7.7 93 392-495 78-171 (585)
209 PRK05647 purN phosphoribosylgl 43.3 1.1E+02 0.0024 32.9 8.6 59 392-468 3-61 (200)
210 PRK06466 acetolactate synthase 42.3 70 0.0015 39.6 8.0 92 392-494 69-161 (574)
211 PRK06725 acetolactate synthase 41.8 1E+02 0.0022 38.2 9.2 92 392-494 79-171 (570)
212 PRK06457 pyruvate dehydrogenas 41.8 91 0.002 38.3 8.8 93 392-495 66-158 (549)
213 PRK06112 acetolactate synthase 41.4 94 0.002 38.5 8.9 93 392-495 76-169 (578)
214 COG4032 Predicted thiamine-pyr 41.4 20 0.00044 36.6 2.5 121 702-849 44-168 (172)
215 PRK07418 acetolactate synthase 41.2 1.1E+02 0.0024 38.3 9.5 93 392-495 87-180 (616)
216 PRK08155 acetolactate synthase 40.9 75 0.0016 39.2 7.9 93 392-495 78-171 (564)
217 PRK11269 glyoxylate carboligas 40.3 85 0.0018 39.0 8.3 93 392-495 70-163 (591)
218 PRK07586 hypothetical protein; 39.7 81 0.0018 38.3 7.9 93 392-495 66-159 (514)
219 COG0028 IlvB Thiamine pyrophos 38.9 1.4E+02 0.0031 37.0 9.8 93 391-494 65-158 (550)
220 PRK07979 acetolactate synthase 38.8 1.4E+02 0.0029 37.1 9.7 93 392-495 69-162 (574)
221 PRK08273 thiamine pyrophosphat 38.8 87 0.0019 39.0 8.1 93 392-495 69-162 (597)
222 PF04273 DUF442: Putative phos 38.5 92 0.002 30.4 6.5 49 446-497 45-96 (110)
223 PRK08978 acetolactate synthase 38.4 1.1E+02 0.0024 37.6 8.8 93 392-495 65-158 (548)
224 TIGR03254 oxalate_oxc oxalyl-C 38.1 1E+02 0.0022 38.0 8.4 95 392-495 67-162 (554)
225 PRK08322 acetolactate synthase 37.9 98 0.0021 37.9 8.2 93 392-495 65-158 (547)
226 PRK06456 acetolactate synthase 37.2 1E+02 0.0022 38.1 8.3 93 392-495 70-163 (572)
227 PRK08199 thiamine pyrophosphat 37.2 96 0.0021 38.2 8.0 93 392-495 73-166 (557)
228 PRK12474 hypothetical protein; 36.4 1.1E+02 0.0025 37.2 8.4 92 392-494 70-162 (518)
229 PF09851 SHOCT: Short C-termin 35.3 48 0.001 25.1 3.1 27 525-552 4-30 (31)
230 TIGR01504 glyox_carbo_lig glyo 35.3 1E+02 0.0022 38.3 7.9 93 392-495 69-162 (588)
231 PRK09107 acetolactate synthase 34.7 1.4E+02 0.003 37.3 8.9 93 392-495 76-169 (595)
232 PRK07524 hypothetical protein; 34.6 2E+02 0.0044 35.2 10.2 94 392-494 66-161 (535)
233 PRK08979 acetolactate synthase 33.4 1.2E+02 0.0026 37.5 8.1 93 392-495 69-162 (572)
234 PRK06276 acetolactate synthase 33.1 1.7E+02 0.0037 36.3 9.4 93 392-495 65-158 (586)
235 cd02001 TPP_ComE_PpyrDC Thiami 32.8 1.2E+02 0.0026 31.1 6.7 30 809-840 121-150 (157)
236 PRK06965 acetolactate synthase 32.6 1.4E+02 0.0031 37.1 8.5 164 266-495 15-179 (587)
237 PRK08266 hypothetical protein; 32.3 2.1E+02 0.0046 35.1 9.8 93 392-495 70-166 (542)
238 PRK06882 acetolactate synthase 32.0 1.4E+02 0.003 36.9 8.3 93 392-495 69-162 (574)
239 PF13344 Hydrolase_6: Haloacid 31.9 30 0.00064 32.9 1.9 69 395-485 8-76 (101)
240 PF07295 DUF1451: Protein of u 31.6 2.2E+02 0.0047 29.4 8.1 41 524-564 18-58 (146)
241 TIGR00118 acolac_lg acetolacta 30.7 2.1E+02 0.0046 35.2 9.5 92 392-494 66-158 (558)
242 PRK06154 hypothetical protein; 30.5 1.3E+02 0.0028 37.3 7.6 91 392-495 83-174 (565)
243 KOG1615 Phosphoserine phosphat 30.2 1.6E+02 0.0034 32.1 7.0 49 271-319 89-137 (227)
244 cd02009 TPP_SHCHC_synthase Thi 28.7 1.6E+02 0.0034 30.6 6.8 118 703-840 47-170 (175)
245 CHL00099 ilvB acetohydroxyacid 28.7 2.2E+02 0.0048 35.4 9.3 93 392-495 78-171 (585)
246 PRK05858 hypothetical protein; 28.2 1.6E+02 0.0036 36.1 7.9 92 392-494 69-161 (542)
247 PRK07710 acetolactate synthase 28.1 2.4E+02 0.0051 35.0 9.4 93 392-495 80-173 (571)
248 PLN02573 pyruvate decarboxylas 27.7 1.4E+02 0.0031 37.1 7.3 94 392-494 80-179 (578)
249 TIGR02720 pyruv_oxi_spxB pyruv 27.2 2E+02 0.0043 35.7 8.5 93 392-495 65-157 (575)
250 PRK08527 acetolactate synthase 26.5 2.6E+02 0.0057 34.5 9.3 93 392-495 68-161 (563)
251 PRK09259 putative oxalyl-CoA d 26.4 3E+02 0.0064 34.1 9.8 95 392-495 74-169 (569)
252 TIGR00655 PurU formyltetrahydr 25.7 2.2E+02 0.0047 32.3 7.7 55 389-467 83-141 (280)
253 TIGR03394 indol_phenyl_DC indo 25.4 2E+02 0.0043 35.4 8.0 95 392-495 65-163 (535)
254 PRK13010 purU formyltetrahydro 25.1 2.3E+02 0.005 32.3 7.8 54 390-467 93-150 (289)
255 PRK08327 acetolactate synthase 25.1 1.6E+02 0.0035 36.5 7.1 94 392-494 77-178 (569)
256 PLN02331 phosphoribosylglycina 23.9 1.6E+02 0.0034 32.0 6.0 53 393-467 2-58 (207)
257 PF10925 DUF2680: Protein of u 23.7 1.9E+02 0.0042 25.3 5.3 31 528-558 22-52 (59)
258 cd02013 TPP_Xsc_like Thiamine 23.7 2.5E+02 0.0055 29.7 7.4 35 804-840 137-174 (196)
259 KOG2733 Uncharacterized membra 23.2 1.7E+02 0.0036 34.6 6.1 85 392-502 5-99 (423)
260 PRK08617 acetolactate synthase 22.5 3.4E+02 0.0074 33.3 9.2 93 392-495 69-162 (552)
261 PF08312 cwf21: cwf21 domain; 22.4 1.8E+02 0.0039 24.3 4.6 32 526-558 13-44 (46)
262 TIGR02418 acolac_catab acetola 22.4 3.5E+02 0.0077 33.1 9.3 93 392-495 63-156 (539)
263 PRK09124 pyruvate dehydrogenas 21.9 2.9E+02 0.0064 34.1 8.6 91 393-494 69-159 (574)
264 PRK06048 acetolactate synthase 21.9 3.4E+02 0.0074 33.5 9.1 93 392-495 72-165 (561)
No 1
>KOG0450 consensus 2-oxoglutarate dehydrogenase, E1 subunit [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5.9e-272 Score=2268.37 Aligned_cols=941 Identities=63% Similarity=1.070 Sum_probs=897.7
Q ss_pred CCCCCCCCCCCCCCCccCCCCHHHHHHHHHHHhhCCCCcCHHHHHHHhhccC------CCCCCCC---------------
Q 001713 51 APVPRPVPLSRLTDNFLDGTSSVYLEELQRSWEADPNSVDESWQNFFRNFVG------QAATSPG--------------- 109 (1021)
Q Consensus 51 ~~~~~~~~~~~~~~~~l~~~n~~yie~lY~~~~~dP~sV~~sW~~~F~~~~~------~~~~~~~--------------- 109 (1021)
++.++.++++...++||+|+++.||||||++|++||+|||.||++||+++.. ++++.|+
T Consensus 35 ~~~~r~~~~~~~td~Fl~g~ss~YveEmy~AW~~dP~SVh~SWDayFrn~~~~~~~~~~a~~~p~~~~~~~~~t~~~~~~ 114 (1017)
T KOG0450|consen 35 QQVPRSVAASVATDPFLSGTSSSYVEEMYRAWLEDPNSVHKSWDAYFRNVSAGAPPPAQASQAPLSRSAAVAGTQSAVAA 114 (1017)
T ss_pred ccccccccCcccccccccCcchHHHHHHHHHHHcCCchhhhhHHHHHHhcccCCCCccccccCCCccccccccccccccc
Confidence 5677888888899999999999999999999999999999999999999843 1222220
Q ss_pred -----CChhhHHHHHHHHHHHHHHHhcCccccccCCCCCCC---C-----CCCCCCCcccCCCCcccccceeecCccccc
Q 001713 110 -----ISGQTIQESMRLLLLVRAYQVNGHMKAKLDPLGLEE---R-----EIPDDLDPAFYGFTEADLDREFFLGVWSMA 176 (1021)
Q Consensus 110 -----~~~~~~~~~~~~~~li~ayr~~Gh~~A~~dPl~~~~---~-----~~~~~l~~~~~g~~~~dl~~~~~~~~~~~~ 176 (1021)
.+++.+.++++|+.||||||.|||..|+|||||+.. + +.+++|++++|||+|+|||++|.+. ++
T Consensus 115 ~~~t~~s~~~v~~hl~vqlLiRaYQirGH~~A~LDPLGi~~~~~~~~~p~~i~~~~~l~~Ygf~E~DLDref~L~---~t 191 (1017)
T KOG0450|consen 115 RPNTGISDKTVEDHLKVQLLIRAYQIRGHHKAKLDPLGINDADLDSSVPADIPEELTLAFYGFTEADLDREFHLP---TT 191 (1017)
T ss_pred ccCCCcccccHHHHHHHHHHHHHHHhcccccccCCccccccccccccCCCCCChhhhhhhcCCchhhccceeccC---Cc
Confidence 234678999999999999999999999999999843 2 2466799999999999999999984 45
Q ss_pred ccccCCCCCcCHHHHHHHHHHHhcCcccccccccCCHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 001713 177 GFLSENRPVQTLRSILTRLEQAYCGSIGFEYMHISDREKCNWLRDKIETPTPMQYNRQRREVILDRLVWSTQFENFLATK 256 (1021)
Q Consensus 177 ~~~~~~~~~~~l~~i~~~l~~~Ycg~ig~E~~hi~~~~~~~Wl~~~~E~~~~~~ls~e~~~~i~~~M~~ar~fE~~l~~~ 256 (1021)
+|++++++.+|||||+++|+++||++||+|||||.|.++|+||++|||+|....+|.|+++-||.+|+++..||+||.+|
T Consensus 192 ~Fi~~~~~~ltLreIl~rlE~~YC~~igvEfmhI~~~eqcnWir~k~EtP~~~q~s~e~k~~il~RL~~st~FE~FLa~K 271 (1017)
T KOG0450|consen 192 TFIGGGESSLTLREILRRLEKAYCGSIGVEFMHINDLEQCNWIRQKFETPGPMQYSHEQKRVILDRLTRSTRFEEFLATK 271 (1017)
T ss_pred ccccCCCccccHHHHHHHHHHHhhccceeEEEeeCcHHHhHHHHHhccCCCccccCHHHHHHHHHHHHHhhHHHHHHhhh
Confidence 79988899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCcccccCCccchHHHHHHHHHHHhhCCCCcEEEcCCcccHHHHHHHhcCCCHHHHHHHhcCCCCCCCCCCcccCCCC
Q 001713 257 WTTAKRFGLEGGETLIPGMKEMFDRAADLGVESIVIGMPHRGRLNVLGNVVRKPLRQIFSEFSGGTRPVDEVGLYTGTGD 336 (1021)
Q Consensus 257 ~~~~Krfg~eG~Ea~i~gl~~~l~~a~~~g~~D~vigm~HRgrln~La~v~g~~~~~if~Ef~G~~~~~~~G~~~gGsgD 336 (1021)
|+..||||+||||++||||+.+|++++++||+++|+||+||||+|+|+||+.||+++||+||.|.... .. ||||
T Consensus 272 w~seKRFGLEGcE~lIP~mK~iiDrS~elGVe~iviGMpHRGRLNvL~NVvRKpl~qIfseF~g~~~~-De-----GSGD 345 (1017)
T KOG0450|consen 272 WPSEKRFGLEGCEVLIPAMKTIIDRSSELGVESIVIGMPHRGRLNVLANVVRKPLEQIFSEFSGLEAA-DE-----GSGD 345 (1017)
T ss_pred CCccccccccchhhhhhHHHHHhhhhhhcCchheEecCCccchhHHHHHHHhhHHHHHHHhccCCCCC-cC-----CCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999995433 32 7999
Q ss_pred ccccccccCCCCCC-CCcceeeeeccccCCcccccceeehHHHHhHHhcCCCCCCCcEEEEEeCccccCCccHHHHHHHh
Q 001713 337 VKYHLGTSYDRPTR-GGKRIHLSLVANPSHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHL 415 (1021)
Q Consensus 337 vkyHlg~s~~~~~~-~g~~i~l~l~~npShlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDgA~sGqG~v~Ealnl 415 (1021)
||||+|++.++.+. +|+.|+|+|++|||||+++.||++|.++|.|++.+|.+++|.+.|++||||||+|||+|||||++
T Consensus 346 VKYHLG~~~~R~~r~s~k~i~LslVANPSHLEA~DPVV~GKtrA~q~y~~D~~~~k~m~ILiHGDaaFAgQGVVyET~hl 425 (1017)
T KOG0450|consen 346 VKYHLGMYYERPNRVSGKNITLSLVANPSHLEAVDPVVMGKTRAEQFYTGDEEGKKVMGILIHGDAAFAGQGVVYETFHL 425 (1017)
T ss_pred eeeeeccccccccccCCceeEEEEecCchhhcccCceeechHHHHHHhccccccceeEEEEEecchhhccCceEEEeecc
Confidence 99999999999877 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCcccEEEEEEcCCcccccCCCCCcccccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEe
Q 001713 416 SALPNYSIGGTIHIVVNNQVAFTTDPMSGRSSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLV 495 (1021)
Q Consensus 416 A~LP~y~~GGvI~Vv~NNq~g~tT~~~~~rs~~~~sd~Aka~g~p~~~VdG~D~eAV~~a~~~A~e~rr~~~gPvlIe~v 495 (1021)
+.||+|+|||+||||+||||||||+|+.+||++||+|+||+.++||||||+||||||..+|+.|.|||.+|++||+||++
T Consensus 426 s~LP~YtT~GTvHvVvNNQIgFTTDPR~aRSspYcTDvar~v~aPIFHVNaDD~EAV~~vc~vAAeWR~tFh~DvVVDlV 505 (1017)
T KOG0450|consen 426 SDLPSYTTGGTVHVVVNNQIGFTTDPRFARSSPYCTDVARVVNAPIFHVNADDPEAVMHVCKVAAEWRKTFHKDVVVDLV 505 (1017)
T ss_pred ccCCCcccCCeEEEEEccccccccCcccccCCCCchhHHHHhCCCeEeecCCChHHHHHHHHHHHHHHHHhccCeEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccCCCCCCCCCCCCCHHHHHHHHhCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHchhcCCCc-cchhh
Q 001713 496 CYRRFGHNEIDEPSFTQPKMYKIIRSHPSSLEIYQNKLLECQHVTQEDINKIQEKVNRILSEEFVASKDYVPNR-RDWLS 574 (1021)
Q Consensus 496 tYR~~GHne~Ddp~ytqp~ey~~i~~~~dpi~~y~~~Li~~Gi~t~ee~~~i~~~~~~~l~~a~~~A~~~~p~~-~~~~~ 574 (1021)
|||++||||.|+|+||||.||+.|++++++++.|.++|+++|.+|++|+++..+++...+++||+.++++.|.. .+|++
T Consensus 506 cyRR~GHNE~DeP~FTQPlMYk~I~k~~~~l~~Y~ekLl~egtvs~~evd~~~~k~~~I~eeafe~sKd~~~~~~rdWL~ 585 (1017)
T KOG0450|consen 506 CYRRHGHNEIDEPMFTQPLMYKQIRKHKPVLQKYAEKLLSEGTVSQQEVDEEIKKYDNILEEAFERSKDYKPLHIRDWLD 585 (1017)
T ss_pred EEeecCCCcccCccccchHHHHHHHcCCcHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhhccccchhhhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999766 89999
Q ss_pred hhccCCCCccc---ccccCCCCCChHHHHHHHHhhhcCCCCCCcccchHHHHHHHHHHhhcCCCcCHHHHHHHHHHHHHh
Q 001713 575 AYWSGFKSPEQ---LSRIRNTGVKPEILKNVGKAITTLPENFKPHRGVKKVYELRAQMIETGEGIDWALGEALAFATLLV 651 (1021)
Q Consensus 575 ~~~~~~~~~~~---~~~~~~t~v~~~~l~~i~~~~~~~P~~f~~h~~l~~~l~~R~~~~~~~~~idw~~AE~lA~~~ll~ 651 (1021)
.+|.+|.+|+. .....+|||+.+.|+.||+++.++||+|++|+.|+|+|++|.+|+++ +++|||+||+|||||||.
T Consensus 586 spW~gF~spd~~~~i~~~~~Tgv~~e~L~~ig~~~ss~PE~F~~Hrgl~Ril~~R~~mi~~-~~iDwal~EalAFgsLl~ 664 (1017)
T KOG0450|consen 586 SPWPGFFSPDGQPKILPCPSTGVKEEILKHIGKVASSVPEGFKIHRGLKRILKNRAQMIKS-EGVDWALAEALAFGSLLK 664 (1017)
T ss_pred CCCccccCccCCCccccCCCCCCCHHHHHHHHHhhccCCcccchhhhHHHHHHHHHHhhhh-cccchHHHHHHHHHHHHh
Confidence 99999998742 23366799999999999999999999999999999999999999998 889999999999999999
Q ss_pred cCCcEEEEcccCCCcccccccceeccCCcC-ceeccCCCcccccCCcccEEecCccchHHHHHHHHhhccCCCCcceEeh
Q 001713 652 EGNHVRLSGQDVERGTFSHRHSVLHDQETG-EQYCPLDHVMMNQDAEMFTVSNSSLSEFGVLGFELGYSMENPNSLVMWE 730 (1021)
Q Consensus 652 ~~~~Vrl~GeDv~rGtF~~RHavl~dq~t~-~~y~pL~~L~~~~~~g~~rV~nspLSE~~vlGfe~G~a~~g~~~lviwE 730 (1021)
||.+||||||||+||||||||+|||||+++ ++|+||++|. .+|+++.|+||.|||+||||||+||||++|+.|||||
T Consensus 665 EG~hVRlSGQDVERGTFShRH~VLHDQ~~d~~~y~PlnhL~--~~Qa~ytV~NSSLSEygVLGFElGYsm~sPNaLVlWE 742 (1017)
T KOG0450|consen 665 EGIHVRLSGQDVERGTFSHRHHVLHDQEVDKRTYIPLNHLW--PNQAPYTVCNSSLSEYGVLGFELGYSMASPNALVLWE 742 (1017)
T ss_pred cCceEEeecccccccccccchhhhcccccCcceecchhhcC--CCCCceeeeccchhhhheecceecccccCCCceEEee
Confidence 999999999999999999999999999999 8999999999 8899999999999999999999999999999999999
Q ss_pred hhhhhhHhhHHHHHHHHHhhhhhhhcCccceEEEeCccCCCCCcCCcCchhhHhhhccCCCCCcccCCCchhhhcccccC
Q 001713 731 AQFGDFANGAQVIFDQFVNSGESKWLRQSGLVVMLPHGYDGQGPEHSSARLERFLQMSDDNPYVIPEMDSTLRTQIQECN 810 (1021)
Q Consensus 731 aqFgDF~n~Aq~~iDqfi~s~~~kw~~~~~lV~~lPhG~~G~GpeHSs~r~Er~Lql~~e~~~~~~~ipg~~~~~~~~~N 810 (1021)
||||||+|+||+||||||++|++||.+++||||+|||||+|+||||||+|+|||||||+|||++||.....+.+|+|+||
T Consensus 743 AQFGDFaNtAQ~IiDQFIssGqaKW~rqsGlVllLPHGyeG~GPEHSSaR~ERfLQm~nddp~~~p~~~~~~~~Ql~dcN 822 (1017)
T KOG0450|consen 743 AQFGDFANTAQCIIDQFISSGQAKWVRQSGLVLLLPHGYEGMGPEHSSARPERFLQMSNDDPDVFPDEEEFLQRQLQDCN 822 (1017)
T ss_pred hhhccccccchhhHHhHhccchhhhhhhcCeEEEccCCcCCCCcccccccHHHHHHhccCCCccCCcccHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999988766889999999
Q ss_pred eEEEecCCHHHHHHHHHHHHhcCCCCcEEEEeeccccCCccccCCcccccccCCCCCCCCCCCcceEeecCccccccCCC
Q 001713 811 WQIVNVTTPANYFHVLRRQIHREFRKPLVVMSPKNLLRHKECKSNLSEFDDVQGHPGFDKQGTRFKRLIKDQNEHSDLEE 890 (1021)
Q Consensus 811 l~Vv~pstpad~fhlLrrqi~~~~~kPliv~~pK~Llr~~~~~s~~~e~~~~~~~~~~~~~~~~f~~vi~~~~~~~~~~~ 890 (1021)
|+||||||||||||+|||||+++||||||||+||+|||||.|+|+++||.+ |..|+++|++.|++...++
T Consensus 823 w~vvn~tTPaNyfHvLRRQi~~~FRKPliif~pKsLLRHp~arS~~~ef~~----------g~~fq~vi~e~g~~~~~pe 892 (1017)
T KOG0450|consen 823 WQVVNCTTPANYFHVLRRQIHRPFRKPLIIFTPKSLLRHPEARSSFSEFDE----------GTGFQRVIPEDGKAAQNPE 892 (1017)
T ss_pred eEEEecCChHHHHHHHHHHhhhcccCceEEeccHHhhcCccccCCHHHhcc----------CCCCceeccccccccCChh
Confidence 999999999999999999999999999999999999999999999999986 4689999999999888999
Q ss_pred CCeEEEEeechhHHHHHHHHHHcC-CCcEEEEEecccCCCCHHHHHHHHHcCCCceEEEEecCCcccchHhhHHHHHHHH
Q 001713 891 GIRRLILCSGKVYYELYEERKKHS-ASDIAICRVEQLCPFPYDLVQRELKRYPNAEVVWSQEEPMNMGAYTYIAPRLCTA 969 (1021)
Q Consensus 891 g~~~~Iv~~Gk~~~~l~~a~~~~~-~~~v~ii~le~L~Pfp~~~i~~~l~k~~~~~~vwvqEe~~n~G~~~~v~~~i~~~ 969 (1021)
+++++|+|||||||+|.++|++.+ ..+|||+|+|||+|||+++|+++++||||+|+|||||||+|||+|+||.|||.++
T Consensus 893 ~vkrlv~csGkVyydL~k~Rk~~~~~~~vAi~RvEQl~PFp~dli~~e~~~YpnaEivWcQEE~~NmG~w~Yv~PRl~T~ 972 (1017)
T KOG0450|consen 893 NVKRLVFCSGKVYYDLTKERKEVGLEGDVAITRVEQLSPFPFDLIQQELNKYPNAEIVWCQEEHKNMGAWDYVEPRLRTA 972 (1017)
T ss_pred hceEEEEecceEehhhhHHHHhcCcccceeEEEeeccCCCcHHHHHHHHHhCCCceeeehhhhhcccCchhhcchHHHHH
Confidence 999999999999999999999987 5789999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccCCCCcEEEEcCCCCcCCCcccHHHHHHHHHHHHHHhcCCCCC
Q 001713 970 MKAVDRGTMEDIKYVGRAPSAASATGFYQVHVKEQSELMQKAIQPEPI 1017 (1021)
Q Consensus 970 ~~~l~~~~~~~~~~vgr~~~~~pa~g~~~~h~~e~~~i~~~a~~~~~~ 1017 (1021)
++.+. .+++|+||.++++||||....|..||++++++||+.++.
T Consensus 973 l~~~~----r~v~Y~GR~Psaa~AtGnk~~Hl~eq~~~l~~a~~~~~~ 1016 (1017)
T KOG0450|consen 973 LKRLA----RPVKYAGRLPSAAPATGNKQTHLAEQKAFLNKAFQLDPS 1016 (1017)
T ss_pred HHhhC----CcceecccCCcccccccchhHHHHHHHHHHHHHhccCCC
Confidence 98775 699999999999999999999999999999999998765
No 2
>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed
Probab=100.00 E-value=1e-233 Score=2031.70 Aligned_cols=888 Identities=47% Similarity=0.784 Sum_probs=817.5
Q ss_pred ccCCCC-HHHHHHHHHHHhhCCCCcCHHHHHHHhhccCC--C--C--CCCCCChhhHHHHHHHHHHHHHHHhcCcccccc
Q 001713 66 FLDGTS-SVYLEELQRSWEADPNSVDESWQNFFRNFVGQ--A--A--TSPGISGQTIQESMRLLLLVRAYQVNGHMKAKL 138 (1021)
Q Consensus 66 ~l~~~n-~~yie~lY~~~~~dP~sV~~sW~~~F~~~~~~--~--~--~~~~~~~~~~~~~~~~~~li~ayr~~Gh~~A~~ 138 (1021)
.+.|.. +.|+-.+-+.-+-+ |.=|...|+.+.-+ . + ..+......+.+..+|++||+|||.||||+|++
T Consensus 331 VIdGA~sg~FL~~ik~lLeG~----d~Fyd~iF~~L~iPYePvrw~~D~~~~~~~~i~K~arv~elI~ayR~rGHLmAd~ 406 (1228)
T PRK12270 331 IIQGAESGEFLRTIHQLLLGE----DGFYDEIFESLRIPYEPVRWATDIPADHEDEVDKNARVMELIHAYRVRGHLMADT 406 (1228)
T ss_pred eeccHhHHHHHHHHHHHHhcc----cchHHHHHHHhCCCCCCccccCCCCCCchhhhhHHHHHHHHHHHHHhccchhccC
Confidence 455554 45555544433313 45688899887311 0 1 011233567899999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCcccCCCCcccccceeecCcccccccccCCCCCcCHHHHHHHHHHHhcCcccccccccCCHHHHHH
Q 001713 139 DPLGLEEREIPDDLDPAFYGFTEADLDREFFLGVWSMAGFLSENRPVQTLRSILTRLEQAYCGSIGFEYMHISDREKCNW 218 (1021)
Q Consensus 139 dPl~~~~~~~~~~l~~~~~g~~~~dl~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~l~~~Ycg~ig~E~~hi~~~~~~~W 218 (1021)
|||+...+ ..|+||+.+||||-.|||++|.+| +|. |++.|+||||+..|+++||++||+|||||+|++||.|
T Consensus 407 dPL~~~~r-~hpdLd~~~hGLTlWDLdR~f~~g-----gf~--g~~~m~LrdiL~~LRdsYcr~vg~EymhI~dpeqr~W 478 (1228)
T PRK12270 407 DPLEYRQR-SHPDLDVLTHGLTLWDLDREFPVG-----GFG--GKERMKLRDILGVLRDSYCRTVGIEYMHIQDPEQRRW 478 (1228)
T ss_pred Cccccccc-CCCCCCccccCCCHHhcCceeecC-----CcC--CcccccHHHHHHHHHHHHhhhheeeeeecCCHHHHHH
Confidence 99998544 689999999999999999999998 554 7788999999999999999999999999999999999
Q ss_pred HHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccCCccchHHHHHHHHHHHhhCCCCcEEEcCCccc
Q 001713 219 LRDKIETPTPMQYNRQRREVILDRLVWSTQFENFLATKWTTAKRFGLEGGETLIPGMKEMFDRAADLGVESIVIGMPHRG 298 (1021)
Q Consensus 219 l~~~~E~~~~~~ls~e~~~~i~~~M~~ar~fE~~l~~~~~~~Krfg~eG~Ea~i~gl~~~l~~a~~~g~~D~vigm~HRg 298 (1021)
||+|||.+. .+++.+++++||++|..++.||.||++||.+|||||+||.|++||.|+++|+.|++.|.++++|||+|||
T Consensus 479 ~Q~rvE~~~-~kp~~~eq~~iL~~LnaaEaFEtFLqtkyvGqkRFslEG~Es~iplld~~~~~aa~~~l~evvigm~HRG 557 (1228)
T PRK12270 479 LQERVERPH-EKPTREEQKRILSKLNAAEAFETFLQTKYVGQKRFSLEGGESLIPLLDAVLDQAAEHGLDEVVIGMAHRG 557 (1228)
T ss_pred HHHHhhCCC-CCCCHHHHHHHHHHhhhHHHHHHHHhhhcccceeeeecchhhHHHHHHHHHHHHHhcCCceEEecccccc
Confidence 999999764 6789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCHHHHHHHhcCCCCCCCCCCcccCCCCccccccccCCCCCCCCcceeeeeccccCCcccccceeehHHH
Q 001713 299 RLNVLGNVVRKPLRQIFSEFSGGTRPVDEVGLYTGTGDVKYHLGTSYDRPTRGGKRIHLSLVANPSHLEAVDPVVIGKTR 378 (1021)
Q Consensus 299 rln~La~v~g~~~~~if~Ef~G~~~~~~~G~~~gGsgDvkyHlg~s~~~~~~~g~~i~l~l~~npShlg~~~PvA~G~A~ 378 (1021)
|+|||+|++|||+.+||+||.|+.++... .||||||||+|+........|+.|.++|++|||||++++||..|.+|
T Consensus 558 RLNVLani~gK~y~qiF~EFegn~dp~~~----~GsGDVKYHlG~eG~~~~~~g~~~~v~laaNPSHLEavdpVleGivR 633 (1228)
T PRK12270 558 RLNVLANIVGKPYSQIFREFEGNLDPRSA----QGSGDVKYHLGAEGTFTQMFGDEIKVSLAANPSHLEAVDPVLEGIVR 633 (1228)
T ss_pred hHHHHHHHhcCCHHHHHHHhcCCCCcccc----CcCcceeeeccCceeeeccCCCeeEEEEecCchhhhhcchHhhhhhh
Confidence 99999999999999999999999876554 58999999999888777777888999999999999999999999999
Q ss_pred HhHHhcCCC-CCCCcEEEEEeCccccCCccHHHHHHHhcCCCCCCcccEEEEEEcCCcccccCCCCCcccccHHHHHhhc
Q 001713 379 AKQYYSNDM-DRTKNMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQVAFTTDPMSGRSSQYCTDVAKAL 457 (1021)
Q Consensus 379 A~q~~~~d~-~~~~~v~v~~~GDgA~sGqG~v~EalnlA~LP~y~~GGvI~Vv~NNq~g~tT~~~~~rs~~~~sd~Aka~ 457 (1021)
|+|+..+.. .+..+++|++|||+||+|||+|+||||||+|++|+||||||||+||||||||.+.++||+.|++|+||++
T Consensus 634 akQd~l~~g~~~~~vlpi~~hGdaafagQGvV~Etlnla~l~~y~tGGtIhvivNNqiGftT~p~~~Rss~y~td~ak~~ 713 (1228)
T PRK12270 634 AKQDRLDKGEEGFTVLPILLHGDAAFAGQGVVAETLNLSQLRGYRTGGTIHIVVNNQVGFTTAPESSRSSEYATDVAKMI 713 (1228)
T ss_pred hhhhhhcccccCCceeEEEEeccccccCCchHHHHHHHHhccCCCCCCeEEEEEecCcccccCccccccchhhHHHHhhc
Confidence 999987632 3458999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeeeccCCCCCCCCCCCCCHHHHHHHHhCCCHHHHHHHHHHHcc
Q 001713 458 DAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYRRFGHNEIDEPSFTQPKMYKIIRSHPSSLEIYQNKLLECQ 537 (1021)
Q Consensus 458 g~p~~~VdG~D~eAV~~a~~~A~e~rr~~~gPvlIe~vtYR~~GHne~Ddp~ytqp~ey~~i~~~~dpi~~y~~~Li~~G 537 (1021)
++|+||||||||+||+.++++|++||++|+||||||++|||++||||+|||++|||.||+.|..++++.++|.+.|+.+|
T Consensus 714 ~~PifhVNGdDpeAv~~va~lA~~yr~~f~~dVvIdlvcYRrrGHNEgDdPSmtqP~mY~~i~~~~svrk~yte~Ligrg 793 (1228)
T PRK12270 714 QAPIFHVNGDDPEAVVRVARLAFEYRQRFHKDVVIDLVCYRRRGHNEGDDPSMTQPLMYDLIDAKRSVRKLYTEALIGRG 793 (1228)
T ss_pred CCCEEeECCCCHHHHHHHHHHHHHHHHHcCCCeEEEEEEEeecCCCCCCCcccCCchhhhhhhhcchHHHHHHHHHhhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHchhcCCCccchhhhhccCCCCcccccccCCCCCChHHHHHHHHhhhcCCCCCCccc
Q 001713 538 HVTQEDINKIQEKVNRILSEEFVASKDYVPNRRDWLSAYWSGFKSPEQLSRIRNTGVKPEILKNVGKAITTLPENFKPHR 617 (1021)
Q Consensus 538 i~t~ee~~~i~~~~~~~l~~a~~~A~~~~p~~~~~~~~~~~~~~~~~~~~~~~~t~v~~~~l~~i~~~~~~~P~~f~~h~ 617 (1021)
.+|++|++++.++++++|+++|.+.++....+....... .........++|.|+.+.|+.|+++..++||+|++||
T Consensus 794 dit~ee~e~~l~dy~~~Le~~f~e~re~~~~~~~~~~~~----~~~~~~~~~~~Tav~~~~l~~i~da~~~~PegFt~Hp 869 (1228)
T PRK12270 794 DITVEEAEQALRDYQGQLERVFNEVREAEKKPPEPPESV----ESDQGPPAGVDTAVSAEVLERIGDAHVNLPEGFTVHP 869 (1228)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCc----cccccCCCCCCCCCCHHHHHHHHHHhccCCCCCccCh
Confidence 999999999999999999999999987542211100000 0111223366899999999999999999999999999
Q ss_pred chHHHHHHHHHHhhcCCCcCHHHHHHHHHHHHHhcCCcEEEEcccCCCcccccccceeccCCcCceeccCCCcccccCCc
Q 001713 618 GVKKVYELRAQMIETGEGIDWALGEALAFATLLVEGNHVRLSGQDVERGTFSHRHSVLHDQETGEQYCPLDHVMMNQDAE 697 (1021)
Q Consensus 618 ~l~~~l~~R~~~~~~~~~idw~~AE~lA~~~ll~~~~~Vrl~GeDv~rGtF~~RHavl~dq~t~~~y~pL~~L~~~~~~g 697 (1021)
+|+++|++|.+|..+| +||||++|.|||||||.||..|||+|||+.||||+||||||||.+||++|+||++|. +++|
T Consensus 870 kl~~~l~~R~~m~~~g-~iDWa~gEllAfGsLl~eG~~VRL~GQDsrRGTF~QRHavl~D~~tg~e~~Pl~~l~--~~q~ 946 (1228)
T PRK12270 870 KLKPLLEKRREMAREG-GIDWAFGELLAFGSLLLEGTPVRLSGQDSRRGTFSQRHAVLIDRETGEEYTPLQNLS--DDQG 946 (1228)
T ss_pred hhHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhcCceeeeeccccCCcceeeeeEEEecCCCCcccCcHhhcC--CCcc
Confidence 9999999999999865 599999999999999999999999999999999999999999999999999999999 9999
Q ss_pred ccEEecCccchHHHHHHHHhhccCCCCcceEehhhhhhhHhhHHHHHHHHHhhhhhhhcCccceEEEeCccCCCCCcCCc
Q 001713 698 MFTVSNSSLSEFGVLGFELGYSMENPNSLVMWEAQFGDFANGAQVIFDQFVNSGESKWLRQSGLVVMLPHGYDGQGPEHS 777 (1021)
Q Consensus 698 ~~rV~nspLSE~~vlGfe~G~a~~g~~~lviwEaqFgDF~n~Aq~~iDqfi~s~~~kw~~~~~lV~~lPhG~~G~GpeHS 777 (1021)
+|.|+||+|||+++||||||||+++|..||+||||||||+||||.|||+||+|+|+||+|+|+|||+|||||+||||+||
T Consensus 947 ~f~vydS~LSEyAa~GFEYGYSv~~pdaLVlWEAQFGDF~NGAQtiIDefIss~e~KWgQ~S~vvlLLPHGyEGQGPdHS 1026 (1228)
T PRK12270 947 KFLVYDSLLSEYAAMGFEYGYSVERPDALVLWEAQFGDFANGAQTIIDEFISSGEAKWGQRSGVVLLLPHGYEGQGPDHS 1026 (1228)
T ss_pred eEEEecchhhHHHhhccceeeecCCCcceeeehhhhcccccchHHHHHHHHhhhHhhhccccceEEEccCCcCCCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhhHhhhccCCCCCcccCCCchhhhcccccCeEEEecCCHHHHHHHHHHHHhcCCCCcEEEEeeccccCCccccCCcc
Q 001713 778 SARLERFLQMSDDNPYVIPEMDSTLRTQIQECNWQIVNVTTPANYFHVLRRQIHREFRKPLVVMSPKNLLRHKECKSNLS 857 (1021)
Q Consensus 778 s~r~Er~Lql~~e~~~~~~~ipg~~~~~~~~~Nl~Vv~pstpad~fhlLrrqi~~~~~kPliv~~pK~Llr~~~~~s~~~ 857 (1021)
|+|||||||||||+ ||+|++|||||+||||||||..+..++|||||+||+|||+|.++|+++
T Consensus 1027 SaRiERfLqlcAe~------------------nm~Va~psTPA~yFHLLRrqa~~~~~rPLvVfTPKSmLR~KaA~S~ve 1088 (1228)
T PRK12270 1027 SARIERFLQLCAEG------------------NMTVAQPSTPANYFHLLRRQALSGPRRPLVVFTPKSMLRLKAAVSDVE 1088 (1228)
T ss_pred hHHHHHHHHhhccC------------------CeEEEccCChHHHHHHHHHHhhcCCCCCeEEEChHHhhcchhhcCCHH
Confidence 99999999999995 999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCCCCCCCcceEeecCccccccCCCCCeEEEEeechhHHHHHHHHHHcCCCcEEEEEecccCCCCHHHHHHH
Q 001713 858 EFDDVQGHPGFDKQGTRFKRLIKDQNEHSDLEEGIRRLILCSGKVYYELYEERKKHSASDIAICRVEQLCPFPYDLVQRE 937 (1021)
Q Consensus 858 e~~~~~~~~~~~~~~~~f~~vi~~~~~~~~~~~g~~~~Iv~~Gk~~~~l~~a~~~~~~~~v~ii~le~L~Pfp~~~i~~~ 937 (1021)
||++ ++|++||+|+.. ...+++++||+||||+||+|+++|++.+..+++|||+|||||||.+.|.+.
T Consensus 1089 dFT~-----------g~F~pVi~D~~~--~~~~~V~RVlLcSGKvYYdL~a~R~k~~~~d~AIvRvEQLyP~p~~~l~~~ 1155 (1228)
T PRK12270 1089 DFTE-----------GKFRPVIDDPTV--DDGAKVRRVLLCSGKLYYDLAARREKDGRDDTAIVRVEQLYPLPRAELREA 1155 (1228)
T ss_pred Hhcc-----------CCceecCCCCCC--CCccceeEEEEEcchhHHHHHHHHHhcCCCceEEEEhhhhCCCCHHHHHHH
Confidence 9997 999999998764 345579999999999999999999998888999999999999999999999
Q ss_pred HHcCCCc-eEEEEecCCcccchHhhHHHHHHHHHHhhccCCCCcEEEEcCCCCcCCCcccHHHHHHHHHHHHHHhcC
Q 001713 938 LKRYPNA-EVVWSQEEPMNMGAYTYIAPRLCTAMKAVDRGTMEDIKYVGRAPSAASATGFYQVHVKEQSELMQKAIQ 1013 (1021)
Q Consensus 938 l~k~~~~-~~vwvqEe~~n~G~~~~v~~~i~~~~~~l~~~~~~~~~~vgr~~~~~pa~g~~~~h~~e~~~i~~~a~~ 1013 (1021)
|.+|||+ +++||||||.|||+|.|+...+.+.+. ...+++||+||+++|||+|+.++|..||++||++||.
T Consensus 1156 l~~ypna~e~~wvQeEP~NqGaw~f~~~~l~~~l~-----~~~~lr~VsRpasasPAtGs~kvH~~EQ~~Ll~~Af~ 1227 (1228)
T PRK12270 1156 LARYPNATEVVWVQEEPANQGAWPFMALNLPELLP-----DGRRLRRVSRPASASPATGSAKVHAVEQQELLDEAFA 1227 (1228)
T ss_pred HHhCCCcceeEEeccCcccCCCchhhhhhhHhhcc-----CCCCceEecCCcccCCCccchhhHHHHHHHHHHHHhc
Confidence 9999999 999999999999999999999998874 2368999999999999999999999999999999996
No 3
>TIGR00239 2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 component. The E1 ortholog from Corynebacterium glutamicum is unusual in having an N-terminal extension that resembles the dihydrolipoamide succinyltransferase (E2) component of 2-oxoglutarate dehydrogenase.
Probab=100.00 E-value=3.2e-230 Score=2066.86 Aligned_cols=898 Identities=48% Similarity=0.806 Sum_probs=821.0
Q ss_pred ccCCCCHHHHHHHHHHHhhCCCCcCHHHHHHHhhccCC----C-CCCC---------C---C--C---h-hhHHHHHHHH
Q 001713 66 FLDGTSSVYLEELQRSWEADPNSVDESWQNFFRNFVGQ----A-ATSP---------G---I--S---G-QTIQESMRLL 122 (1021)
Q Consensus 66 ~l~~~n~~yie~lY~~~~~dP~sV~~sW~~~F~~~~~~----~-~~~~---------~---~--~---~-~~~~~~~~~~ 122 (1021)
||+|.|+.|||+||++|++||+|||+||+.||+++.+. . +..+ . . . . ....+++++.
T Consensus 1 fl~g~n~~yie~lY~~~~~dP~sv~~~w~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 80 (929)
T TIGR00239 1 YLSGANQSYIEELYEDYLTDPDSVDASWRSTFDQLPGPGPAPDQFHSPTRSYFRRLAKDASRGSVTISDPDTNVSQVKVL 80 (929)
T ss_pred CCCCCCHHHHHHHHHHHHhChhcCCHHHHHHHHhCcccCCccccccCchhhhhcccccccccccccccchhhhHHHHHHH
Confidence 78999999999999999999999999999999999311 1 1000 0 0 0 0 1122578999
Q ss_pred HHHHHHHhcCccccccCCCCCCCCCCCCCCCcccCCCCcccccceeecCcccccccccCC-CCCcCHHHHHHHHHHHhcC
Q 001713 123 LLVRAYQVNGHMKAKLDPLGLEEREIPDDLDPAFYGFTEADLDREFFLGVWSMAGFLSEN-RPVQTLRSILTRLEQAYCG 201 (1021)
Q Consensus 123 ~li~ayr~~Gh~~A~~dPl~~~~~~~~~~l~~~~~g~~~~dl~~~~~~~~~~~~~~~~~~-~~~~~l~~i~~~l~~~Ycg 201 (1021)
+||+|||.+||+.|+||||++..+..+++|++++|||+++||++.|.++... +... ...+||+|||++|+++|||
T Consensus 81 ~LI~ayR~~GHl~A~lDPL~~~~~~~~~~l~~~~~gl~~~dl~~~~~~~~~~----~~~~~~~~~~l~eii~~L~~~YCg 156 (929)
T TIGR00239 81 QLIRAYRFRGHLHANLDPLGLKQQDKVPELDLSFYGLTEADLQETFNIGSFV----SGKDATMKLSNLELLQALKQTYCG 156 (929)
T ss_pred HHHHHHHHhcchheecCCCCCCCCCCCCccChhhcCCChHHhCceeeecccc----cCccccccCCHHHHHHHHHHHhcC
Confidence 9999999999999999999975566788999999999999999999876221 1112 2246999999999999999
Q ss_pred cccccccccCCHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccCCccchHHHHHHHHHH
Q 001713 202 SIGFEYMHISDREKCNWLRDKIETPTPMQYNRQRREVILDRLVWSTQFENFLATKWTTAKRFGLEGGETLIPGMKEMFDR 281 (1021)
Q Consensus 202 ~ig~E~~hi~~~~~~~Wl~~~~E~~~~~~ls~e~~~~i~~~M~~ar~fE~~l~~~~~~~Krfg~eG~Ea~i~gl~~~l~~ 281 (1021)
+||+|||||.|+++|+||++|||+.....+|+|++++||++|++++.||+||++||+++||||+||+|++||+|+++|+.
T Consensus 157 ~ig~E~~hi~~~~~r~Wl~~~iE~~~~~~~~~~~k~~il~~L~~ae~fE~fl~~kf~g~KRFslEG~eslip~l~~~i~~ 236 (929)
T TIGR00239 157 SIGAEYMHITSTEEKRWLQQRIESGERAQFNSEEKKRFLSRLTAAEGFERFLGAKFPGAKRFSLEGLDALVPMLKEIIRH 236 (929)
T ss_pred cceeeeecCCCHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCceeecccHHHHHHHHHHHHHH
Confidence 99999999999999999999999754678999999999999999999999999999999999999999999999999999
Q ss_pred HhhCCCCcEEEcCCcccHHHHHHHhcCCCHHHHHHHhcCCCCCCCCCCcccCCCCcccccc-ccCCCCCCCCcceeeeec
Q 001713 282 AADLGVESIVIGMPHRGRLNVLGNVVRKPLRQIFSEFSGGTRPVDEVGLYTGTGDVKYHLG-TSYDRPTRGGKRIHLSLV 360 (1021)
Q Consensus 282 a~~~g~~D~vigm~HRgrln~La~v~g~~~~~if~Ef~G~~~~~~~G~~~gGsgDvkyHlg-~s~~~~~~~g~~i~l~l~ 360 (1021)
|+++|++|+|+||+||||+|+|+|++|||+++||+||+|+..+... +|+||||||+| ++.+..+ .|+.++++|+
T Consensus 237 ~~~~gv~d~v~gmaHRGRlnvL~nv~gkp~~~if~ef~g~~~~~~~----~g~gdvKyHlg~~~~~~~~-~~~~~~~~l~ 311 (929)
T TIGR00239 237 SVNSGTRDVVLGMAHRGRLNVLVNVLGKPPEDIFSEFAGKHKSHLP----DGTGDVKYHMGRFSSDFTT-DGKLVHLALA 311 (929)
T ss_pred HHHcCCCeEEeccccCCcHHHHHHHhCCCHHHHHHHHcCCCCCccc----CCCCCcCccCCCccccccc-CCCcceeeec
Confidence 9999999999999999999999999999999999999998765322 36899999999 6766554 5666999999
Q ss_pred cccCCcccccceeehHHHHhHHhcCC-CCCCCcEEEEEeCccccCCccHHHHHHHhcCCCCCCcccEEEEEEcCCccccc
Q 001713 361 ANPSHLEAVDPVVIGKTRAKQYYSND-MDRTKNMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQVAFTT 439 (1021)
Q Consensus 361 ~npShlg~~~PvA~G~A~A~q~~~~d-~~~~~~v~v~~~GDgA~sGqG~v~EalnlA~LP~y~~GGvI~Vv~NNq~g~tT 439 (1021)
+||||||+++|+|+|+|+|.|+++++ ..+++.|+||+||||||+|||+||||||||.|++|.|||+||||+||||||||
T Consensus 312 ~npSHLeav~Pva~G~ArA~q~~~~~~~~~~~~v~v~~~GDgA~agQG~v~EaLNlA~l~~lPvGGtIfvveNNqyg~tT 391 (929)
T TIGR00239 312 FNPSHLEIVSPVVIGSTRARLDRLNDSPESTKVLAILIHGDAAFAGQGVVQETLNMSKLRGYSVGGTIHIIINNQIGFTT 391 (929)
T ss_pred CCCcccccccchhhhHHHHHHHhcCCcccccceEEEEEeccccccCCChHHHHHHHHHhcCCCCCCEEEEEEeCCEEEEE
Confidence 99999999999999999999999764 44567999999999999789999999999999999999999999999999999
Q ss_pred CCCCCcccccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeeeccCCCCCCCCCCCCCHHHHHHH
Q 001713 440 DPMSGRSSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYRRFGHNEIDEPSFTQPKMYKII 519 (1021)
Q Consensus 440 ~~~~~rs~~~~sd~Aka~g~p~~~VdG~D~eAV~~a~~~A~e~rr~~~gPvlIe~vtYR~~GHne~Ddp~ytqp~ey~~i 519 (1021)
++.+++++.||+|+|++||+|++|||||||+||++|+++|++|||+|+||+|||++|||++|||++|+|+||+|+||+.|
T Consensus 392 ~~~~~~s~~~~sd~Ak~ygiP~~~VDG~D~~AV~~a~~~Ave~~r~g~gPvlIE~~tYR~~GHne~D~p~~yrp~~~~~i 471 (929)
T TIGR00239 392 NPLDARSTPYCSDLAKMIQAPIFHVNADDPEAVAFATRLAVEYRNTFKRDVFIDLVGYRRHGHNEADEPSATQPLMYQKI 471 (929)
T ss_pred cHHHhcCccCHHHHheecCCCEEEECCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEeccCCCCCCCCCCccCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHchhcCC-CccchhhhhccCCCCcccccccCCCCCChHH
Q 001713 520 RSHPSSLEIYQNKLLECQHVTQEDINKIQEKVNRILSEEFVASKDYVP-NRRDWLSAYWSGFKSPEQLSRIRNTGVKPEI 598 (1021)
Q Consensus 520 ~~~~dpi~~y~~~Li~~Gi~t~ee~~~i~~~~~~~l~~a~~~A~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~t~v~~~~ 598 (1021)
++++||+.+|+++|+++|++|++++++|+++++++|++|++.++..++ ... ...|.++.. ..+....+|+++.+.
T Consensus 472 ~~~~dPi~~~~~~Li~~Gv~te~e~~~i~~~~~~~v~~a~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~t~v~~~~ 547 (929)
T TIGR00239 472 KKHPTPRKVYADKLVSEGVATEEDVTEMVNLYRDALEAADCVVPSWREMNTA---SFTWSPELN-HEWDEEYPNKVEMKR 547 (929)
T ss_pred HhCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhhhccCCcccc---ccccccccc-cccccCCCCCCCHHH
Confidence 989999999999999999999999999999999999999999987552 221 124655432 222334589999999
Q ss_pred HHHHHHhhhcCCCCCCcccchHHHHHHH-HHHhhcCCCcCHHHHHHHHHHHHHhcCCcEEEEcccCCCcccccccceecc
Q 001713 599 LKNVGKAITTLPENFKPHRGVKKVYELR-AQMIETGEGIDWALGEALAFATLLVEGNHVRLSGQDVERGTFSHRHSVLHD 677 (1021)
Q Consensus 599 l~~i~~~~~~~P~~f~~h~~l~~~l~~R-~~~~~~~~~idw~~AE~lA~~~ll~~~~~Vrl~GeDv~rGtF~~RHavl~d 677 (1021)
|+.|+++++++|++|++||+|+|+++.| ++|.++++.+||++||++||+++|.+|++|||+||||+|||||||||||||
T Consensus 548 l~~l~~~~~~~P~~f~~h~~~~k~~~~R~~~~~~g~~~~~~~~A~~~A~~~~l~~~~~V~l~GeDv~rGtFshRHavl~d 627 (929)
T TIGR00239 548 LQELAKRISEVPEGVEMHSRVAKIYFDRTKAMAAGEKLFDWGGAENLAFATLVDDGIPVRLSGEDSERGTFFQRHAVLHD 627 (929)
T ss_pred HHHHHHHhccCCCCccccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHhcCCCEEEEeeeCCCcccccccccccc
Confidence 9999999999999999999999999999 888877777999999999999999999999999999999999999999999
Q ss_pred CCcCceeccCCCcccccCCcccEEecCccchHHHHHHHHhhccCCCCcceEehhhhhhhHhhHHHHHHHHHhhhhhhhcC
Q 001713 678 QETGEQYCPLDHVMMNQDAEMFTVSNSSLSEFGVLGFELGYSMENPNSLVMWEAQFGDFANGAQVIFDQFVNSGESKWLR 757 (1021)
Q Consensus 678 q~t~~~y~pL~~L~~~~~~g~~rV~nspLSE~~vlGfe~G~a~~g~~~lviwEaqFgDF~n~Aq~~iDqfi~s~~~kw~~ 757 (1021)
|+||..|.|++||. ++||++||+||||||++|+|||||||+.||+||+|||+|||||+|+||++|||||+++++||++
T Consensus 628 q~~g~~~~~~~~l~--~~~g~~rV~nsplSE~a~~G~~~G~a~~g~~~l~i~E~qfgDF~~~AQv~~Dq~i~~~~~K~~~ 705 (929)
T TIGR00239 628 QSNGSTYTPLQHLH--NGQGAFRVWNSVLSEESVLGFEYGYATTSPRTLVIWEAQFGDFANGAQVVIDQFISSGEQKWGQ 705 (929)
T ss_pred cccCceeecccchh--hhcCCeeEEcCCccHHHHHHHHHhHHhcCCCCceEEEEeccchhcchHHHHHHHHHHHHHHhcC
Confidence 99999999999999 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceEEEeCccCCCCCcCCcCchhhHhhhccCCCCCcccCCCchhhhcccccCeEEEecCCHHHHHHHHHHHHhcCCCCc
Q 001713 758 QSGLVVMLPHGYDGQGPEHSSARLERFLQMSDDNPYVIPEMDSTLRTQIQECNWQIVNVTTPANYFHVLRRQIHREFRKP 837 (1021)
Q Consensus 758 ~~~lV~~lPhG~~G~GpeHSs~r~Er~Lql~~e~~~~~~~ipg~~~~~~~~~Nl~Vv~pstpad~fhlLrrqi~~~~~kP 837 (1021)
++||||++||||+|+||+|||+|+|||||||++ | ||+||+||||+|||||||||+.++++||
T Consensus 706 ~sglv~~~p~G~~g~g~~hsS~~~E~~lql~~~--------~----------gl~Vv~pstpad~~~lLrrqa~r~~~~P 767 (929)
T TIGR00239 706 MSGLVMLLPHGYEGQGPEHSSGRLERFLQLAAE--------Q----------NMQVCVPTTPAQVFHILRRQALRGMRRP 767 (929)
T ss_pred ccCeEEEecCcCCCCCchhhccCHHHHHHHhCC--------C----------CCEEEecCCHHHHHHHHHHHHHhCCCCC
Confidence 999999999999999999999999999999975 3 6999999999999999999988889999
Q ss_pred EEEEeeccccCCccccCCcccccccCCCCCCCCCCCcceEeecCccc--cccCCCCCeEEEEeechhHHHHHHHHHHcCC
Q 001713 838 LVVMSPKNLLRHKECKSNLSEFDDVQGHPGFDKQGTRFKRLIKDQNE--HSDLEEGIRRLILCSGKVYYELYEERKKHSA 915 (1021)
Q Consensus 838 liv~~pK~Llr~~~~~s~~~e~~~~~~~~~~~~~~~~f~~vi~~~~~--~~~~~~g~~~~Iv~~Gk~~~~l~~a~~~~~~ 915 (1021)
||||+||+|||++.++|+++|+++ +.|+++|++... +.+.++++++||+|||++||+|.+++.+.++
T Consensus 768 vi~~~~K~L~r~~~a~S~~~e~~~-----------~~f~~~i~~~~~~~~~~~~~~v~~vv~~sg~v~~~l~~~~~~~~~ 836 (929)
T TIGR00239 768 LVVMSPKSLLRHPLAVSSLEELAE-----------GTFQPVIGEIEESGLSLDPEGVKRLVLCSGKVYYDLHEQRRKNGQ 836 (929)
T ss_pred EEEeccHhhhcCccccCccccCCC-----------CCcccccccccccccccCccCCcEEEEECchHHHHHHHHHHhcCC
Confidence 999999999999999999999986 779999876432 2346789999999999999999998877788
Q ss_pred CcEEEEEecccCCCCHHHHHHHHHcCCCc-eEEEEecCCcccchHhhHHHHHHHHHHhhccCCCCcEEEEcCCCCcCCCc
Q 001713 916 SDIAICRVEQLCPFPYDLVQRELKRYPNA-EVVWSQEEPMNMGAYTYIAPRLCTAMKAVDRGTMEDIKYVGRAPSAASAT 994 (1021)
Q Consensus 916 ~~v~ii~le~L~Pfp~~~i~~~l~k~~~~-~~vwvqEe~~n~G~~~~v~~~i~~~~~~l~~~~~~~~~~vgr~~~~~pa~ 994 (1021)
++|+|||||||+|||+++|.++|+||+|+ ++|||||||+|||+|+||.++|.+.+.. ..+++|||||++||||+
T Consensus 837 ~~v~iirle~L~Pf~~~~i~~sl~k~~~~~~~vw~qEep~n~Gaw~~v~~rl~~~l~~-----~~~l~y~gR~~~aspA~ 911 (929)
T TIGR00239 837 KDVAIVRIEQLYPFPHKAVKEVLQQYPNLKEIVWCQEEPLNMGAWYYSQPHLREVIPE-----GVSVRYAGRPASASPAV 911 (929)
T ss_pred CCEEEEEeeeeCCCCHHHHHHHHHhcCCCCeEEEEeccCCCCCCHHHHHHHHHHHhcc-----CCceEEeCCCCCCCCCC
Confidence 99999999999999999999999999999 9999999999999999999999987742 14799999999999999
Q ss_pred ccHHHHHHHHHHHHHHhc
Q 001713 995 GFYQVHVKEQSELMQKAI 1012 (1021)
Q Consensus 995 g~~~~h~~e~~~i~~~a~ 1012 (1021)
|+.+.|+.||++||++||
T Consensus 912 G~~~~H~~eq~~li~~a~ 929 (929)
T TIGR00239 912 GYMSLHQKQQQDLLNDAL 929 (929)
T ss_pred CCHHHHHHHHHHHHHHhC
Confidence 999999999999999997
No 4
>COG0567 SucA 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes [Energy production and conversion]
Probab=100.00 E-value=3.8e-231 Score=2024.70 Aligned_cols=895 Identities=53% Similarity=0.904 Sum_probs=845.8
Q ss_pred CCCCccCCCCHHHHHHHHHHHhhCCCCcCHHHHHHHhhccCCC---CCC---CCCChhhHHHHHHHHHHHHHHHhcCccc
Q 001713 62 LTDNFLDGTSSVYLEELQRSWEADPNSVDESWQNFFRNFVGQA---ATS---PGISGQTIQESMRLLLLVRAYQVNGHMK 135 (1021)
Q Consensus 62 ~~~~~l~~~n~~yie~lY~~~~~dP~sV~~sW~~~F~~~~~~~---~~~---~~~~~~~~~~~~~~~~li~ayr~~Gh~~ 135 (1021)
++.++|+|.|+.|||+||++|++||+|||++|+.||+++.... +.. .........++.++++||+|||.|||+.
T Consensus 5 ~~~~~l~g~n~~~ie~ly~~~~~~p~svd~~w~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~ayR~~Ghl~ 84 (906)
T COG0567 5 LNTSYLSGANAAYIEELYEQYLQDPNSVDPSWQEFFDGLSDPVRESFRRLAKKGNDPDATLKSVKVLRLINAYRSRGHLH 84 (906)
T ss_pred cccccccCcchHHHHHHHHHHhhCCcccCHHHHHHHHhcCcchhhhhhhhcccccchhhhHHHHHHHHHHHHHHHhchhh
Confidence 4678999999999999999999999999999999999985431 100 0122345678999999999999999999
Q ss_pred cccCCCCCCCCCCCCCCCcccCCCCcccccceeecCcccccccccCCCCCcCHHHHHHHHHHHhcCcccccccccCCHHH
Q 001713 136 AKLDPLGLEEREIPDDLDPAFYGFTEADLDREFFLGVWSMAGFLSENRPVQTLRSILTRLEQAYCGSIGFEYMHISDREK 215 (1021)
Q Consensus 136 A~~dPl~~~~~~~~~~l~~~~~g~~~~dl~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~l~~~Ycg~ig~E~~hi~~~~~ 215 (1021)
|+||||++ +++.+++|++++||||++||++.|.++ ..|+ ++..+||+||++.|+++|||+||+|||||.|+++
T Consensus 85 a~ldPL~~-~~~~~~~l~~~~~glt~~d~~~~~~~~----~~~~--~~~~~~l~e~~~~l~~~Ycgsig~E~~hi~~~~~ 157 (906)
T COG0567 85 ANLDPLGL-KRPDVPELDPEFHGLTEADLDETFNIG----DGFL--GKETMTLRELIEILKKTYCGSIGVEYMHISDPEE 157 (906)
T ss_pred hcCCcccC-CCCCccccCHhhcCCCHHHHhcccccc----cccc--ccccccHHHHHHHHHHHhccceeeeeeccCCHHH
Confidence 99999997 677889999999999999999999743 2344 6789999999999999999999999999999999
Q ss_pred HHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccCCccchHHHHHHHHHHHhhCCCCcEEEcCC
Q 001713 216 CNWLRDKIETPTPMQYNRQRREVILDRLVWSTQFENFLATKWTTAKRFGLEGGETLIPGMKEMFDRAADLGVESIVIGMP 295 (1021)
Q Consensus 216 ~~Wl~~~~E~~~~~~ls~e~~~~i~~~M~~ar~fE~~l~~~~~~~Krfg~eG~Ea~i~gl~~~l~~a~~~g~~D~vigm~ 295 (1021)
|+||++|||+ ..+.++.|+++.+|++|+.++.||+||++||+++||||+||+||+||+|+.+|+.|.+.|++++|+||+
T Consensus 158 ~~Wl~~riE~-~~~~~~~e~k~~~l~~L~~ae~fE~fl~~kf~g~KRFslEG~eslip~l~~~i~~~~~~G~~~vviGMa 236 (906)
T COG0567 158 KRWLQERIES-GKPTFTAEEKKAILKRLTAAEGFERFLHTKFPGAKRFSLEGGESLIPMLDELIDRAGKQGVKEVVIGMA 236 (906)
T ss_pred HHHHHHHHhc-CCCCCCHHHHHHHHHHHHHHHHHHHHhhccCCCCccccccchhhHHHHHHHHHHHHHhcCcceEEeccc
Confidence 9999999999 568899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHhcCCCHHHHHHHhcCCCCCCCCCCcccCCCCccccccccCCCCCCCCcceeeeeccccCCcccccceeeh
Q 001713 296 HRGRLNVLGNVVRKPLRQIFSEFSGGTRPVDEVGLYTGTGDVKYHLGTSYDRPTRGGKRIHLSLVANPSHLEAVDPVVIG 375 (1021)
Q Consensus 296 HRgrln~La~v~g~~~~~if~Ef~G~~~~~~~G~~~gGsgDvkyHlg~s~~~~~~~g~~i~l~l~~npShlg~~~PvA~G 375 (1021)
||||||+|+||+|||++.||+||.|+.... ..|||||||+|++.++.+.+| .|||+|++|||||+.++||+.|
T Consensus 237 HRGRLNvL~nvlgKp~~~if~eF~g~~~~~------~~sGDVKYH~G~~~~~~~~~~-~v~l~La~NPSHLE~v~PVV~G 309 (906)
T COG0567 237 HRGRLNVLVNVLGKPYRDIFDEFEGKSAEP------DLSGDVKYHLGFSSDRQTDGG-KVHLSLAFNPSHLEIVNPVVEG 309 (906)
T ss_pred ccchHHHHHHHhCCCHHHHHHHhCCCCCCC------CcccccccccccccccccCCC-eeEEEecCCcchhhhhchhhhc
Confidence 999999999999999999999999987543 248999999999999888877 7999999999999999999999
Q ss_pred HHHHhHHhcCCCCCCCcEEEEEeCccccCCccHHHHHHHhcCCCCCCcccEEEEEEcCCcccccCCCCCcccccHHHHHh
Q 001713 376 KTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQVAFTTDPMSGRSSQYCTDVAK 455 (1021)
Q Consensus 376 ~A~A~q~~~~d~~~~~~v~v~~~GDgA~sGqG~v~EalnlA~LP~y~~GGvI~Vv~NNq~g~tT~~~~~rs~~~~sd~Ak 455 (1021)
.++|+|++..+....++++|++|||+||+|||+|+|+|||+++++|+|||+||||+|||+||||.+.++||++||||+||
T Consensus 310 ~vRa~Qd~~~d~~~~k~lpiliHGDAAfaGQGVV~Etlnls~~~gysvgGtiHiviNNQiGFTTsp~~sRSt~Y~TDvAK 389 (906)
T COG0567 310 SVRAKQDRLGDTERDKVLPILIHGDAAFAGQGVVAETLNLSRLDGYSVGGTWHIVINNQIGFTTSPADARSTPYCTDVAK 389 (906)
T ss_pred chHhhhhhhccCccceeEEEEEecChhcCCccHHHHHHHhhCCCCcccCCeEEEEEecCCCCCCCcccccCCCCCCChhh
Confidence 99999999988777799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeeeccCCCCCCCCCCCCCHHHHHHHHhCCCHHHHHHHHHHH
Q 001713 456 ALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYRRFGHNEIDEPSFTQPKMYKIIRSHPSSLEIYQNKLLE 535 (1021)
Q Consensus 456 a~g~p~~~VdG~D~eAV~~a~~~A~e~rr~~~gPvlIe~vtYR~~GHne~Ddp~ytqp~ey~~i~~~~dpi~~y~~~Li~ 535 (1021)
++++|++||||+|||||..|++.|++||++|++||+||++|||++||||+|+|++|||.||+.|++|+.+.+.|.++|++
T Consensus 390 m~~aPifHVN~DDPEAv~~a~~~A~e~R~~F~kDvvIDlvcYRr~GHNE~DePs~TqP~mY~~I~~h~t~r~~ya~~Lv~ 469 (906)
T COG0567 390 MIEAPIFHVNADDPEAVLFAPALALEYRNGFKKDVVIDLVCYRRHGHNEGDEPSVTQPLMYQKIKKHPTVRKLYADKLIA 469 (906)
T ss_pred ccCCceeecccCCchhhhhhHHHHHHHHhhcCCCeeeecccCCCCCCCccccccccCHHHHHHHhcCCChhhhHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCHHHHHHHHHHHHHHHHHHHHHchhcCCCccchhhhhccCCCCcccccccCCCCCChHHHHHHHHhhhcCCCCCCc
Q 001713 536 CQHVTQEDINKIQEKVNRILSEEFVASKDYVPNRRDWLSAYWSGFKSPEQLSRIRNTGVKPEILKNVGKAITTLPENFKP 615 (1021)
Q Consensus 536 ~Gi~t~ee~~~i~~~~~~~l~~a~~~A~~~~p~~~~~~~~~~~~~~~~~~~~~~~~t~v~~~~l~~i~~~~~~~P~~f~~ 615 (1021)
+|++|+++++.+.+++++.++..+...+.+. ..+++...|.++.... . ...+|+++.+.|+.|+.+++++|++|++
T Consensus 470 ~gvis~~~~~~~~~~~r~~L~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~-~~~~t~v~~~~L~~L~~kl~~~Pe~f~~ 545 (906)
T COG0567 470 EGVISEEEADELVNDYRDALDQGFEVVKEYK--EMDWLEGDWSGYLNAG-L-RHVDTGVPKKTLKELGKKLCTIPEGFEV 545 (906)
T ss_pred hccccHHHHHHHHHHHHHHhhhhhhHHhHHH--hhhccccccccccCCc-c-cccccccCHHHHHHHHHHhhcCCcceeh
Confidence 9999999999999999999999999888766 5567888898877654 2 5778999999999999999999999999
Q ss_pred ccchHHHHHHHHHHhhcCCCcCHHHHHHHHHHHHHhcCCcEEEEcccCCCcccccccceeccCCcCceeccCCCcccccC
Q 001713 616 HRGVKKVYELRAQMIETGEGIDWALGEALAFATLLVEGNHVRLSGQDVERGTFSHRHSVLHDQETGEQYCPLDHVMMNQD 695 (1021)
Q Consensus 616 h~~l~~~l~~R~~~~~~~~~idw~~AE~lA~~~ll~~~~~Vrl~GeDv~rGtF~~RHavl~dq~t~~~y~pL~~L~~~~~ 695 (1021)
|++++++++.|.+|++++.++||++||.|||+||+.+|.+||++||||+||||+|||+|+|||.|+++|+||.+|+ ..
T Consensus 546 h~~v~~~~~~r~~~~~~~~~iDW~~aE~LAfatll~eG~~iRlsGqDs~RGTF~hRHaVlhdq~~~~~y~PL~~l~--~~ 623 (906)
T COG0567 546 HPRVKKILEDRKAMAEGGQGIDWGMAETLAFATLLDEGHPIRLSGQDSGRGTFSHRHAVLHDQKTGETYIPLNHLS--KG 623 (906)
T ss_pred hHHHHHHHHHHHHHhccccccchhHHHHhcccceeccCCccccccccCCCcCccccceeeecccCccccChhhhcc--cc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999 88
Q ss_pred CcccEEecCccchHHHHHHHHhhccCCCCcceEehhhhhhhHhhHHHHHHHHHhhhhhhhcCccceEEEeCccCCCCCcC
Q 001713 696 AEMFTVSNSSLSEFGVLGFELGYSMENPNSLVMWEAQFGDFANGAQVIFDQFVNSGESKWLRQSGLVVMLPHGYDGQGPE 775 (1021)
Q Consensus 696 ~g~~rV~nspLSE~~vlGfe~G~a~~g~~~lviwEaqFgDF~n~Aq~~iDqfi~s~~~kw~~~~~lV~~lPhG~~G~Gpe 775 (1021)
+|.|.|+||+|||+|++|||||||+..|+.|||||||||||+|+||++|||||+||++||+++|+||++|||||+|||||
T Consensus 624 q~~f~v~nS~LSEeAvlgFEYGYs~~~p~~lvlWEAQFGDFaNgAQvviDQfisSge~KW~r~sgLv~lLPHgyEGQGPE 703 (906)
T COG0567 624 QGKFEVINSPLSEEAVLGFEYGYSLANPKTLVLWEAQFGDFANGAQVVIDQFISSGEQKWGRMSGLVMLLPHGYEGQGPE 703 (906)
T ss_pred cceEEEEechhhHHHHHhhhhhhhhcCCchhhhhhhhhcccccCCeeeeccccccHHHHHHHhcCceEEccCCCCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcCchhhHhhhccCCCCCcccCCCchhhhcccccCeEEEecCCHHHHHHHHHHHHhcCCCCcEEEEeeccccCCccccCC
Q 001713 776 HSSARLERFLQMSDDNPYVIPEMDSTLRTQIQECNWQIVNVTTPANYFHVLRRQIHREFRKPLVVMSPKNLLRHKECKSN 855 (1021)
Q Consensus 776 HSs~r~Er~Lql~~e~~~~~~~ipg~~~~~~~~~Nl~Vv~pstpad~fhlLrrqi~~~~~kPliv~~pK~Llr~~~~~s~ 855 (1021)
|||+|||||||||+|+ ||+||+||||+||||+||||+.+.+++|||||+||+|||||.++|+
T Consensus 704 HSSaRlER~LQLcaE~------------------NmqV~~pstpaq~fHlLRrq~~r~~rkPLiimtPKslLR~~~a~S~ 765 (906)
T COG0567 704 HSSARLERFLQLCAEN------------------NMQVVVPSTPAQYFHLLRRQALRDFRKPLIVMTPKSLLRHKLAVSS 765 (906)
T ss_pred CccchhHHHHHhhHHh------------------CCEEEecCcHHHHHHHHHHHHhhcccCceEecChhhhhhccccCCc
Confidence 9999999999999994 9999999999999999999999999999999999999999999999
Q ss_pred cccccccCCCCCCCCCCCcceEeecCccccccCCCCCeEEEEeechhHHHHHHHHHHcCCCcEEEEEecccCCCCHHHHH
Q 001713 856 LSEFDDVQGHPGFDKQGTRFKRLIKDQNEHSDLEEGIRRLILCSGKVYYELYEERKKHSASDIAICRVEQLCPFPYDLVQ 935 (1021)
Q Consensus 856 ~~e~~~~~~~~~~~~~~~~f~~vi~~~~~~~~~~~g~~~~Iv~~Gk~~~~l~~a~~~~~~~~v~ii~le~L~Pfp~~~i~ 935 (1021)
++||++ +.|++++.+... ....++++|+|||||||+|.+.|++.+..+++|||+|||||||.+.|.
T Consensus 766 ~~el~~-----------~~F~~vl~d~~~---~~~~v~rvvlcSGKvyydl~~~r~~~g~~dvaiiRiEqLyPfP~~~l~ 831 (906)
T COG0567 766 LEELTE-----------GTFQPVLEDIDE---LDPKVKRVVLCSGKVYYDLLEQREKDGRDDVAIVRIEQLYPFPAKALA 831 (906)
T ss_pred hhhhch-----------hhhhhhhccccc---cccceeeEEeeccchHHHHHHHHhhcCCcceeEEeeecccCchHHHHH
Confidence 999997 699999988632 223399999999999999999998777778999999999999999999
Q ss_pred HHHHcCCCc-eEEEEecCCcccchHhhHHHHHHHHHHhhccCCCCcEEEEcCCCCcCCCcccHHHHHHHHHHHHHHhcCC
Q 001713 936 RELKRYPNA-EVVWSQEEPMNMGAYTYIAPRLCTAMKAVDRGTMEDIKYVGRAPSAASATGFYQVHVKEQSELMQKAIQP 1014 (1021)
Q Consensus 936 ~~l~k~~~~-~~vwvqEe~~n~G~~~~v~~~i~~~~~~l~~~~~~~~~~vgr~~~~~pa~g~~~~h~~e~~~i~~~a~~~ 1014 (1021)
+.+++|+++ ++|||||||+|||+|.|+.+.+.+.+... ..++|+|||.++|||+|+.+.|++||++++++||+.
T Consensus 832 ~~l~~y~~~~e~vW~QEEp~N~Gaw~~~~~~l~~~l~~~-----~~l~yagRp~saSpA~G~~~~h~~eq~~l~~dal~~ 906 (906)
T COG0567 832 ALLAKYPNVKEFVWCQEEPKNQGAWYYIQPHLEEVLPEG-----DKLRYAGRPASASPAVGSMSVHQKQQEKLLEDALGV 906 (906)
T ss_pred HHHHhccccccccccccCCCccccHHHHHHHHHHhhccc-----chhcccCCCcccCcccccHHHHHHHHHHHhHhhhcC
Confidence 999999999 99999999999999999999999998643 359999999999999999999999999999999963
No 5
>PRK09404 sucA 2-oxoglutarate dehydrogenase E1 component; Reviewed
Probab=100.00 E-value=5.1e-228 Score=2057.43 Aligned_cols=898 Identities=53% Similarity=0.882 Sum_probs=826.6
Q ss_pred CCCccCCCCHHHHHHHHHHHhhCCCCcCHHHHHHHhhccCC--C---------CCCCCCC--h--hhHHHHHHHHHHHHH
Q 001713 63 TDNFLDGTSSVYLEELQRSWEADPNSVDESWQNFFRNFVGQ--A---------ATSPGIS--G--QTIQESMRLLLLVRA 127 (1021)
Q Consensus 63 ~~~~l~~~n~~yie~lY~~~~~dP~sV~~sW~~~F~~~~~~--~---------~~~~~~~--~--~~~~~~~~~~~li~a 127 (1021)
+.+|+++.|+.|||+||++|++||+|||+||+.||+++.+. . +...... . ....+++++.+||+|
T Consensus 10 ~~~~~~~~n~~yie~ly~~~~~dp~sV~~sw~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Li~a 89 (924)
T PRK09404 10 DSSFLFGANAAYIEELYEQYLKDPDSVDEEWRAFFDGLPGVAPDVAHSAVRESFRRLAKPARVSSAVSDPQVKVLQLINA 89 (924)
T ss_pred hcccCCCCCHHHHHHHHHHHhhChhhcCHHHHHHHHhccccccccccchhhhhhhhcccccccchhhhhHHHHHHHHHHH
Confidence 45899999999999999999999999999999999988411 0 0000000 0 122357899999999
Q ss_pred HHhcCccccccCCCCCCCCCCCCCCCcccCCCCcccccceeecCcccccccccCCCCCcCHHHHHHHHHHHhcCcccccc
Q 001713 128 YQVNGHMKAKLDPLGLEEREIPDDLDPAFYGFTEADLDREFFLGVWSMAGFLSENRPVQTLRSILTRLEQAYCGSIGFEY 207 (1021)
Q Consensus 128 yr~~Gh~~A~~dPl~~~~~~~~~~l~~~~~g~~~~dl~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~l~~~Ycg~ig~E~ 207 (1021)
||.+||+.|+||||++..+...++|+|++|||+++|||+.|.++. +.. +...+||+|||++|+++|||+||+||
T Consensus 90 yR~~GHl~A~lDPL~~~~~~~~~~L~~~~~gl~~~dl~~~~~~~~-----~~~-~~~~~~l~eii~~L~~~Ycg~ig~E~ 163 (924)
T PRK09404 90 YRFRGHLAANLDPLGLWKRPDVPELDPAFYGLTEADLDRTFNTGS-----LAL-GKETATLREIIEALKKTYCGSIGVEY 163 (924)
T ss_pred HHHhCchheecCCCCCccCCCCccCChhhcCCChHHcCCccccCc-----ccc-CCCCCcHHHHHHHHHHHhcccHhhee
Confidence 999999999999999855667889999999999999999998752 211 33457999999999999999999999
Q ss_pred cccCCHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccCCccchHHHHHHHHHHHhhCCC
Q 001713 208 MHISDREKCNWLRDKIETPTPMQYNRQRREVILDRLVWSTQFENFLATKWTTAKRFGLEGGETLIPGMKEMFDRAADLGV 287 (1021)
Q Consensus 208 ~hi~~~~~~~Wl~~~~E~~~~~~ls~e~~~~i~~~M~~ar~fE~~l~~~~~~~Krfg~eG~Ea~i~gl~~~l~~a~~~g~ 287 (1021)
|||.|.++|+||++|||+... .+|+|+++++|++|+++|.||+||+++|+++||||++|||+++||++++++.|+++|+
T Consensus 164 ~hi~~~~er~Wl~~~iE~~~~-~~s~e~~~~il~~m~~~r~fE~fl~~~f~~~Krf~~eG~Ea~i~gl~~li~~a~~lg~ 242 (924)
T PRK09404 164 MHISDPEERRWLQQRIESGRP-SFSAEEKKAILERLTAAEGFERFLHTKFVGQKRFSLEGGESLIPMLDEIIRRAGKLGV 242 (924)
T ss_pred ccCCCHHHHHHHHHHHhCCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccccchhhHHHHHHHHHHHHHhCCC
Confidence 999999999999999997665 8999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEcCCcccHHHHHHHhcCCCHHHHHHHhcCCCCCCCCCCcccCCCCccccccccCCCCCCCCcceeeeeccccCCcc
Q 001713 288 ESIVIGMPHRGRLNVLGNVVRKPLRQIFSEFSGGTRPVDEVGLYTGTGDVKYHLGTSYDRPTRGGKRIHLSLVANPSHLE 367 (1021)
Q Consensus 288 ~D~vigm~HRgrln~La~v~g~~~~~if~Ef~G~~~~~~~G~~~gGsgDvkyHlg~s~~~~~~~g~~i~l~l~~npShlg 367 (1021)
+|+++||+||||+|+|+|++|+|+++||+||+|+...... .|+||||||+|++.++.. .|+.+|+++++||||||
T Consensus 243 ~D~vigmaHRgrlnvLa~v~G~~~~~ifaEf~Gk~~~~~~----~~~GdvkyHlG~~~~~~g-~gg~mhi~l~~npShle 317 (924)
T PRK09404 243 KEIVIGMAHRGRLNVLVNVLGKPPRDLFAEFEGKHGPDEV----LGSGDVKYHLGFSSDRET-DGGEVHLSLAFNPSHLE 317 (924)
T ss_pred CCEEEecCcCchHHHHHHhcCCCHHHHHHHHcCCCCCCCC----CCCCCcccccCccccccC-CCCeeEeeccCCccccc
Confidence 9999999999999999999999999999999998721111 257999999998876554 35679999999999999
Q ss_pred cccceeehHHHHhHHhcCC-CCCCCcEEEEEeCccccCCccHHHHHHHhcCCCCCCcccEEEEEEcCCcccccCCCCCcc
Q 001713 368 AVDPVVIGKTRAKQYYSND-MDRTKNMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQVAFTTDPMSGRS 446 (1021)
Q Consensus 368 ~~~PvA~G~A~A~q~~~~d-~~~~~~v~v~~~GDgA~sGqG~v~EalnlA~LP~y~~GGvI~Vv~NNq~g~tT~~~~~rs 446 (1021)
+++|+|+|+|+|.|+++++ .++.+.|+||+|||||++|||+||||||||.|++|.|||+||||+||||||||++.++++
T Consensus 318 av~Pva~G~A~A~q~~~~~~~~~~~~v~v~~~GDgA~agqG~v~EalNlA~l~~lp~ggvIfvveNNq~g~tT~~~~~~s 397 (924)
T PRK09404 318 IVNPVVEGSVRARQDRRGDGQDRKKVLPILIHGDAAFAGQGVVAETLNLSQLRGYRTGGTIHIVINNQIGFTTSPPDDRS 397 (924)
T ss_pred cccCeehhHHHHHHHhcCCcccccceEEEEEecCccccCCChHHHHHHHHHhcCCCCCCEEEEEEeCCEEEeeCHHHhcc
Confidence 9999999999999999876 566679999999999998899999999999999999999999999999999999999999
Q ss_pred cccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeeeccCCCCCCCCCCCCCHHHHHHHHhCCCHH
Q 001713 447 SQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYRRFGHNEIDEPSFTQPKMYKIIRSHPSSL 526 (1021)
Q Consensus 447 ~~~~sd~Aka~g~p~~~VdG~D~eAV~~a~~~A~e~rr~~~gPvlIe~vtYR~~GHne~Ddp~ytqp~ey~~i~~~~dpi 526 (1021)
+.||+|+|++||+|++|||||||+||+.|+++|++|||+|+||+|||++|||++|||++|+|.||+|.||+.|++++||+
T Consensus 398 ~~~~sd~Ak~~giP~~~VDG~D~~AV~~a~~~A~e~~r~g~gPvlIE~~tYR~~GHne~D~p~yr~p~ey~~~~~~~dpi 477 (924)
T PRK09404 398 TPYCTDVAKMVQAPIFHVNGDDPEAVVFATRLALEYRQKFKKDVVIDLVCYRRHGHNEGDEPSFTQPLMYKKIKKHPTTR 477 (924)
T ss_pred chhHHHHHeecCCcEEEEcCCCHHHHHHHHHHHHHHHHhcCcCEEEEEEEecCCCCCCCCCCcCCCHHHHHHHHhcCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999899999
Q ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHchhcCCCccchhhhhccCCCCcccccccCCCCCChHHHHHHHHhh
Q 001713 527 EIYQNKLLECQHVTQEDINKIQEKVNRILSEEFVASKDYVPNRRDWLSAYWSGFKSPEQLSRIRNTGVKPEILKNVGKAI 606 (1021)
Q Consensus 527 ~~y~~~Li~~Gi~t~ee~~~i~~~~~~~l~~a~~~A~~~~p~~~~~~~~~~~~~~~~~~~~~~~~t~v~~~~l~~i~~~~ 606 (1021)
.+|+++|+++|++|++++++|+++++++|++|+++|+++. +.+++...|..+..+. .....+|+++.+.|+.+++++
T Consensus 478 ~~~~~~Li~~G~lt~~e~~~i~~~~~~~v~~a~~~A~~~~--~~~~~~~~~~~~~~~~-~~~~~~t~v~~~~l~~~~~~~ 554 (924)
T PRK09404 478 ELYADKLVAEGVITEEEADEMVNEYRDALDAGFEVVKEWR--PADWLAGDWSPYLGHE-WDDPVDTGVPLERLKELAEKL 554 (924)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhcC--cccccccccccccccc-cccccCCCCCHHHHHHHHHHh
Confidence 9999999999999999999999999999999999998763 5567788898655432 333568999999999999999
Q ss_pred hcCCCCCCcccchHHHHHHHHHHhhcCCCcCHHHHHHHHHHHHHhcCCcEEEEcccCCCcccccccceeccCCcCceecc
Q 001713 607 TTLPENFKPHRGVKKVYELRAQMIETGEGIDWALGEALAFATLLVEGNHVRLSGQDVERGTFSHRHSVLHDQETGEQYCP 686 (1021)
Q Consensus 607 ~~~P~~f~~h~~l~~~l~~R~~~~~~~~~idw~~AE~lA~~~ll~~~~~Vrl~GeDv~rGtF~~RHavl~dq~t~~~y~p 686 (1021)
+++|++|++||+|+|+|++|++|+.+++.|||++||+|||+|+|.+|++|||+||||+||||||||||||||+||..|.|
T Consensus 555 ~~~P~~f~~h~~~~k~~~~R~~~~~~~~~idw~~Ae~lA~~s~l~~~~~v~l~GeDv~rgtFshRHavl~dq~~gg~~~~ 634 (924)
T PRK09404 555 TTVPEGFKVHPKVKKILEDRREMAEGEKPIDWGMAEALAFASLLDEGYPVRLSGQDSGRGTFSHRHAVLHDQKTGETYIP 634 (924)
T ss_pred ccCCCCCcccHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHHHhCCCCEEEEeeeCCCCcccccchhccccCCCCEecc
Confidence 99999999999999999999999988888999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccccCCcccEEecCccchHHHHHHHHhhccCCCCcceEehhhhhhhHhhHHHHHHHHHhhhhhhhcCccceEEEeC
Q 001713 687 LDHVMMNQDAEMFTVSNSSLSEFGVLGFELGYSMENPNSLVMWEAQFGDFANGAQVIFDQFVNSGESKWLRQSGLVVMLP 766 (1021)
Q Consensus 687 L~~L~~~~~~g~~rV~nspLSE~~vlGfe~G~a~~g~~~lviwEaqFgDF~n~Aq~~iDqfi~s~~~kw~~~~~lV~~lP 766 (1021)
++||. ++||++||+||||||++|+|||||||+.|++||+|||+|||||+|+||++|||||+++++||++++||||++|
T Consensus 635 ~~~l~--~~~g~~rV~nsplsE~~~~G~~~G~a~~g~~~l~i~E~qfgDF~~~AQ~~~Dq~i~~~~~k~~~~sglv~~~p 712 (924)
T PRK09404 635 LNHLS--EGQASFEVYDSPLSEEAVLGFEYGYSTAEPNTLVIWEAQFGDFANGAQVVIDQFISSGEQKWGRLSGLVMLLP 712 (924)
T ss_pred ccchh--hhcCCceEecCcchHHHHHHHHHHHHhcCCCCceEEEEeccccccchHHHHHHHHHHHHHHhcCccCeEEEec
Confidence 99999 9999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCcCCcCchhhHhhhccCCCCCcccCCCchhhhcccccCeEEEecCCHHHHHHHHHHHHhcCCCCcEEEEeeccc
Q 001713 767 HGYDGQGPEHSSARLERFLQMSDDNPYVIPEMDSTLRTQIQECNWQIVNVTTPANYFHVLRRQIHREFRKPLVVMSPKNL 846 (1021)
Q Consensus 767 hG~~G~GpeHSs~r~Er~Lql~~e~~~~~~~ipg~~~~~~~~~Nl~Vv~pstpad~fhlLrrqi~~~~~kPliv~~pK~L 846 (1021)
|||+|+||+|||+|+|||||+|+++ ||+||+||||+|||||||+|+.+++|||||||+||+|
T Consensus 713 ~G~~g~g~~hsS~~~E~~l~~~~~~------------------gl~Vv~pstpad~~~lLr~q~~r~~r~Pvv~~~pK~L 774 (924)
T PRK09404 713 HGYEGQGPEHSSARLERFLQLCAED------------------NMQVCNPTTPAQYFHLLRRQALRPFRKPLVVMTPKSL 774 (924)
T ss_pred CcCCCCChhhhccCHHHHHHhCCCC------------------CCEEEecCCHHHHHHHHHHHHhhCCCCCEEEeccHHH
Confidence 9999999999999999999999862 6999999999999999999998888999999999999
Q ss_pred cCCccccCCcccccccCCCCCCCCCCCcceEeecCccccccCCCCCeEEEEeechhHHHHHHHHHHcCCCcEEEEEeccc
Q 001713 847 LRHKECKSNLSEFDDVQGHPGFDKQGTRFKRLIKDQNEHSDLEEGIRRLILCSGKVYYELYEERKKHSASDIAICRVEQL 926 (1021)
Q Consensus 847 lr~~~~~s~~~e~~~~~~~~~~~~~~~~f~~vi~~~~~~~~~~~g~~~~Iv~~Gk~~~~l~~a~~~~~~~~v~ii~le~L 926 (1021)
||++.++|+++|+++ +.|+++|++.. ....+.+++||||||+|||+++++|++++..+|+|||||||
T Consensus 775 ~r~~~~~s~~~e~~~-----------~~f~~vi~~~~--~~~~~~v~r~iv~~Gk~~~~~~~a~~~~~~~~v~ii~le~L 841 (924)
T PRK09404 775 LRHPLAVSSLEELAE-----------GSFQPVIGDID--ELDPKKVKRVVLCSGKVYYDLLEARRKRGIDDVAIVRIEQL 841 (924)
T ss_pred hCCCCCCCCHHHcCC-----------CCceeeccccc--ccCccceeEEEEEcCHHHHHHHHHHHhCCCCCEEEEEeeee
Confidence 999999999999986 66999987643 12234556699999999999999999887779999999999
Q ss_pred CCCCHHHHHHHHHcCCCc-eEEEEecCCcccchHhhHHHHHHHHHHhhccCCCCcEEEEcCCCCcCCCcccHHHHHHHHH
Q 001713 927 CPFPYDLVQRELKRYPNA-EVVWSQEEPMNMGAYTYIAPRLCTAMKAVDRGTMEDIKYVGRAPSAASATGFYQVHVKEQS 1005 (1021)
Q Consensus 927 ~Pfp~~~i~~~l~k~~~~-~~vwvqEe~~n~G~~~~v~~~i~~~~~~l~~~~~~~~~~vgr~~~~~pa~g~~~~h~~e~~ 1005 (1021)
+|||+++|.++|+||+|+ ++|||||||+|||+|+||.++|.+.+... .+++|||||++||||+|+.+.|+.||+
T Consensus 842 ~P~~~~~i~~~v~k~~~~~~~v~vqEe~~n~G~~~~~~~~~~~~~~~~-----~~~~y~gR~~~aspA~G~~~~H~~e~~ 916 (924)
T PRK09404 842 YPFPHEELAAELAKYPNAKEVVWCQEEPKNQGAWYFIQHHLEEVLPEG-----QKLRYAGRPASASPAVGYMSLHKKQQE 916 (924)
T ss_pred CCCCHHHHHHHHHhcCCCCeEEEEeeCCCCCCcHHHHHHHHHHHhccC-----CeeEEECCCCcCCCCCCCHHHHHHHHH
Confidence 999999999999999988 89999999999999999999999987421 479999999999999999999999999
Q ss_pred HHHHHhcC
Q 001713 1006 ELMQKAIQ 1013 (1021)
Q Consensus 1006 ~i~~~a~~ 1013 (1021)
+||++||+
T Consensus 917 ~~i~~a~~ 924 (924)
T PRK09404 917 ALVEDALG 924 (924)
T ss_pred HHHHHHhC
Confidence 99999984
No 6
>KOG0451 consensus Predicted 2-oxoglutarate dehydrogenase, E1 subunit [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3e-202 Score=1667.24 Aligned_cols=849 Identities=43% Similarity=0.769 Sum_probs=792.3
Q ss_pred HHHHHHHHHHHHHhcCccccccCCCCCC-CCCCCCCCCcccCCCCcccccceeecCcccccccccCCCCCcCHHHHHHHH
Q 001713 117 ESMRLLLLVRAYQVNGHMKAKLDPLGLE-EREIPDDLDPAFYGFTEADLDREFFLGVWSMAGFLSENRPVQTLRSILTRL 195 (1021)
Q Consensus 117 ~~~~~~~li~ayr~~Gh~~A~~dPl~~~-~~~~~~~l~~~~~g~~~~dl~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~l 195 (1021)
.+..+.+||+|||.+||+.|++|||++. +-....+|+|..||+-.. .+++..++...+|.|+.+.|
T Consensus 52 ~~a~~~rlv~afr~hGhk~A~vnPl~~l~~v~e~qeL~pa~yG~~~t-------------~gLl~~~k~~~sl~~l~~~L 118 (913)
T KOG0451|consen 52 SQANVYRLVEAFRQHGHKLAAVNPLSILTSVQELQELSPAFYGLQRT-------------DGLLSGPKVAHSLAQLEQLL 118 (913)
T ss_pred ccccHHHHHHHHHHhcchhhccCchHhhhccHHHHHhCHHhhcchhh-------------hhhhcCccccccHHHHHHHH
Confidence 3567899999999999999999999953 233456799999997321 13455566788999999999
Q ss_pred HHHhcCcccccccccCCHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccCCccchHHHH
Q 001713 196 EQAYCGSIGFEYMHISDREKCNWLRDKIETPTPMQYNRQRREVILDRLVWSTQFENFLATKWTTAKRFGLEGGETLIPGM 275 (1021)
Q Consensus 196 ~~~Ycg~ig~E~~hi~~~~~~~Wl~~~~E~~~~~~ls~e~~~~i~~~M~~ar~fE~~l~~~~~~~Krfg~eG~Ea~i~gl 275 (1021)
+++|||++.+||+||+|.|||+||.+++|+.....|.+|++++|-+.|+++..||+||.+||++-||+|.||.|++..-+
T Consensus 119 ~~IYCG~tsiEfs~v~~~eEr~W~a~nFE~l~~e~l~keEr~~i~~Lmlksq~fD~FlatKFpTvKRYGgEGAESM~aFF 198 (913)
T KOG0451|consen 119 KDIYCGSTSIEFSYVEDIEEREWLARNFETLDQEQLGKEERCEIAELMLKSQAFDNFLATKFPTVKRYGGEGAESMLAFF 198 (913)
T ss_pred HhheeCcchhhhhhhccHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhHHHHHHhccchhhhhccccHHHHHHHH
Confidence 99999999999999999999999999999988789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCCcEEEcCCcccHHHHHHHhcCCCHHHHHHHhcCCCCCCCCCCcccCCCCccccccccCCCCCCCCcce
Q 001713 276 KEMFDRAADLGVESIVIGMPHRGRLNVLGNVVRKPLRQIFSEFSGGTRPVDEVGLYTGTGDVKYHLGTSYDRPTRGGKRI 355 (1021)
Q Consensus 276 ~~~l~~a~~~g~~D~vigm~HRgrln~La~v~g~~~~~if~Ef~G~~~~~~~G~~~gGsgDvkyHlg~s~~~~~~~g~~i 355 (1021)
..+++.++..+++++||||+||||+|+|+-.+..|+..||..+.|.+..+.. ....|||-.|+-.|.+ -...++.+
T Consensus 199 ~eLl~~sa~~~ie~viigmpHRGRlnLlt~Ll~fpP~~mFRK~~G~sEFpE~---~~A~gDVlSHl~sS~d-ykg~~~~l 274 (913)
T KOG0451|consen 199 WELLRDSAQANIEHVIIGMPHRGRLNLLTALLNFPPAKMFRKLSGASEFPED---IEAMGDVLSHLHSSED-YKGLGKKL 274 (913)
T ss_pred HHHHHHHHhcCcceEEEeccccCcchHHHHHhcCCHHHHHHHhcCcccCchh---hhHHHHHHHHhhhhhh-hcccCCce
Confidence 9999999999999999999999999999999999999999999999987754 1346899999975544 33456789
Q ss_pred eeeeccccCCcccccceeehHHHHhHHhcCCC---------CCCCcEEEEEeCccccCCccHHHHHHHhcCCCCCCcccE
Q 001713 356 HLSLVANPSHLEAVDPVVIGKTRAKQYYSNDM---------DRTKNMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGT 426 (1021)
Q Consensus 356 ~l~l~~npShlg~~~PvA~G~A~A~q~~~~d~---------~~~~~v~v~~~GDgA~sGqG~v~EalnlA~LP~y~~GGv 426 (1021)
|++|++|||||++++|||+|+++++|..+++. .+..++.|.+||||||.|||+++|++|||++|.|++||+
T Consensus 275 hvtMlpNPSHLEAvNPVAmGKtR~rqqsr~~Gdyspd~sa~~Gd~Vlnv~vHGDaaF~GQGiv~E~~~ls~~PHFrvGGs 354 (913)
T KOG0451|consen 275 HVTMLPNPSHLEAVNPVAMGKTRSRQQSRGEGDYSPDSSAPFGDHVLNVIVHGDAAFAGQGIVQECLNLSYVPHFRVGGS 354 (913)
T ss_pred EEEecCChhhhhccCchhhcchhHHHHhhcCCCCCCCCcCCCCCceEEEEEecchhhccCcccHHHHhhccCCceeecce
Confidence 99999999999999999999999999866532 345789999999999999999999999999999999999
Q ss_pred EEEEEcCCcccccCCCCCcccccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeeeccCCCCCCC
Q 001713 427 IHIVVNNQVAFTTDPMSGRSSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYRRFGHNEID 506 (1021)
Q Consensus 427 I~Vv~NNq~g~tT~~~~~rs~~~~sd~Aka~g~p~~~VdG~D~eAV~~a~~~A~e~rr~~~gPvlIe~vtYR~~GHne~D 506 (1021)
||+|+|||+||||+.+..||+.||+|+||++++|++||||||||+|.+|+++|.+|+|+|+|||||+++|||++||||.|
T Consensus 355 vHLivNNQvgfTtp~~rGRSs~ycsDiaK~~~~pviHVNGD~PEevvraTrLAf~Yqr~FRKDvfIdL~CfRrwgHneld 434 (913)
T KOG0451|consen 355 VHLIVNNQVGFTTPGDRGRSSAYCSDIAKSIQAPVIHVNGDDPEEVVRATRLAFRYQREFRKDVFIDLNCFRRWGHNELD 434 (913)
T ss_pred EEEEecccccccCcccccccchhhhHHHHHhCCCEEEeCCCCHHHHHHHHHHHHHHHHHhhhhheeehHHHHHhcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHhCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHchhcCCCccchhhhhccCCCCcccc
Q 001713 507 EPSFTQPKMYKIIRSHPSSLEIYQNKLLECQHVTQEDINKIQEKVNRILSEEFVASKDYVPNRRDWLSAYWSGFKSPEQL 586 (1021)
Q Consensus 507 dp~ytqp~ey~~i~~~~dpi~~y~~~Li~~Gi~t~ee~~~i~~~~~~~l~~a~~~A~~~~p~~~~~~~~~~~~~~~~~~~ 586 (1021)
||.||+|.||+.+....++.+.|.++|+++|++|+++++++++++.+.|.+.++.+..+.|.+ ..++..|.++..+.+.
T Consensus 435 dp~ftspvmyk~v~aReSvPdlya~~L~~eg~~tee~vkE~~~~y~~~Ln~eL~~~~~y~Pp~-~~~~~~W~gf~qapk~ 513 (913)
T KOG0451|consen 435 DPTFTSPVMYKEVEARESVPDLYAQQLAKEGVLTEEKVKEMRDEYMKYLNEELALAPAYQPPP-SYFEKQWTGFQQAPKE 513 (913)
T ss_pred CccccChhHHHHHHhhhcccHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCccCCCc-hhhHHhhhhhccChhh
Confidence 999999999999998999999999999999999999999999999999999999999887654 3478899999876666
Q ss_pred cccCCCCCChHHHHHHHHhhhcCCCCCCcccchHH-HHHHHHHHhhcCCCcCHHHHHHHHHHHHHhcCCcEEEEcccCCC
Q 001713 587 SRIRNTGVKPEILKNVGKAITTLPENFKPHRGVKK-VYELRAQMIETGEGIDWALGEALAFATLLVEGNHVRLSGQDVER 665 (1021)
Q Consensus 587 ~~~~~t~v~~~~l~~i~~~~~~~P~~f~~h~~l~~-~l~~R~~~~~~~~~idw~~AE~lA~~~ll~~~~~Vrl~GeDv~r 665 (1021)
.+.++|||+.+.|+.||...+++|++|++|+.|-| ..+.|.+.+++|.+|||++||+||+||||.+|++||||||||+|
T Consensus 514 it~WdTGv~~dLLrfiG~~SV~vPedf~~H~HLlKtHv~sRm~Km~~G~kiDWaTAEAlA~GSll~qG~nVRiSGqDVGR 593 (913)
T KOG0451|consen 514 ITYWDTGVDYDLLRFIGQQSVTVPEDFNIHPHLLKTHVNSRMKKMENGVKIDWATAEALAIGSLLYQGHNVRISGQDVGR 593 (913)
T ss_pred hcccccCcchHHHHHhccCceecchhccccHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHhccCceeeeccccCc
Confidence 67899999999999999999999999999999988 58999999999999999999999999999999999999999999
Q ss_pred cccccccceeccCCcCceeccCCCcccccCCcccEEecCccchHHHHHHHHhhccCCCCcceEehhhhhhhHhhHHHHHH
Q 001713 666 GTFSHRHSVLHDQETGEQYCPLDHVMMNQDAEMFTVSNSSLSEFGVLGFELGYSMENPNSLVMWEAQFGDFANGAQVIFD 745 (1021)
Q Consensus 666 GtF~~RHavl~dq~t~~~y~pL~~L~~~~~~g~~rV~nspLSE~~vlGfe~G~a~~g~~~lviwEaqFgDF~n~Aq~~iD 745 (1021)
|||+||||++.||.|.+.|+||+++.+ ...|...|.||+|||.+|||||||+|+++|+.|+|||||||||+||||+|||
T Consensus 594 GTFshRHAM~VdQ~Td~~~IPLN~m~~-~qkg~LEvans~LSEEAvLGFEyGmsienP~~L~iWEAQFGDFfNGAQIIiD 672 (913)
T KOG0451|consen 594 GTFSHRHAMLVDQQTDEMFIPLNSMEG-GQKGKLEVANSILSEEAVLGFEYGMSIENPNNLIIWEAQFGDFFNGAQIIID 672 (913)
T ss_pred ccccccceeeeeccccceeeeccccCC-CcCCeeEeccccccHhhhhhhhcccccCCcccceeehhhhcccccCceEEEe
Confidence 999999999999999999999999985 4568999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhhhcCccceEEEeCccCCCCCcCCcCchhhHhhhccCCCCCcccCCCchhhhcccccCeEEEecCCHHHHHHH
Q 001713 746 QFVNSGESKWLRQSGLVVMLPHGYDGQGPEHSSARLERFLQMSDDNPYVIPEMDSTLRTQIQECNWQIVNVTTPANYFHV 825 (1021)
Q Consensus 746 qfi~s~~~kw~~~~~lV~~lPhG~~G~GpeHSs~r~Er~Lql~~e~~~~~~~ipg~~~~~~~~~Nl~Vv~pstpad~fhl 825 (1021)
.||++||+||+.+++|||+|||||+|.||||||||||||||||+..+.. ++| ...||.||+||||||||||
T Consensus 673 TFi~sgE~KWl~ssglvmLLPHGyDGAgpeHSSCRiERFLQlCDS~E~~---vDG------d~VNm~vvnPTTpAQYfHl 743 (913)
T KOG0451|consen 673 TFIVSGETKWLESSGLVMLLPHGYDGAGPEHSSCRIERFLQLCDSKETS---VDG------DSVNMHVVNPTTPAQYFHL 743 (913)
T ss_pred eeecccchhhhhhCCeEEEccCCcCCCCCccchhhHHHHHHHhcccccc---CCC------cceeEEEeCCCCHHHHHHH
Confidence 9999999999999999999999999999999999999999999986443 555 5689999999999999999
Q ss_pred HHHHHhcCCCCcEEEEeeccccCCccccCCcccccccCCCCCCCCCCCcceEeecCccccccCCCCCeEEEEeechhHHH
Q 001713 826 LRRQIHREFRKPLVVMSPKNLLRHKECKSNLSEFDDVQGHPGFDKQGTRFKRLIKDQNEHSDLEEGIRRLILCSGKVYYE 905 (1021)
Q Consensus 826 Lrrqi~~~~~kPliv~~pK~Llr~~~~~s~~~e~~~~~~~~~~~~~~~~f~~vi~~~~~~~~~~~g~~~~Iv~~Gk~~~~ 905 (1021)
||||+.++|||||||..||.|||+|.++|.++||. ||+.|++||.|. ...++++++||+||||.||.
T Consensus 744 LRRQ~vrNfRKPLiVv~PK~LLRlPaA~ST~~ef~----------PGTtf~nVigd~---~~~p~kvkkvifcSGKH~y~ 810 (913)
T KOG0451|consen 744 LRRQLVRNFRKPLIVVAPKTLLRLPAATSTHEEFQ----------PGTTFHNVIGDT---IAKPEKVKKVIFCSGKHYYT 810 (913)
T ss_pred HHHHHHHhccCceEEechHHHhhCcchhhhHhhcC----------CCcccccccccc---ccChhHheEEEEecCcchhh
Confidence 99999999999999999999999999999999998 689999999875 45789999999999999999
Q ss_pred HHHHHHHcCCC-cEEEEEecccCCCCHHHHHHHHHcCCCc-eEEEEecCCcccchHhhHHHHHHHHHHhhccCCCCcEEE
Q 001713 906 LYEERKKHSAS-DIAICRVEQLCPFPYDLVQRELKRYPNA-EVVWSQEEPMNMGAYTYIAPRLCTAMKAVDRGTMEDIKY 983 (1021)
Q Consensus 906 l~~a~~~~~~~-~v~ii~le~L~Pfp~~~i~~~l~k~~~~-~~vwvqEe~~n~G~~~~v~~~i~~~~~~l~~~~~~~~~~ 983 (1021)
+.++|++++.. .++|||+|.|||||.+.+++.++||+++ ++||.||||+|||+|++|.||+++.+. .+++|
T Consensus 811 l~k~Re~rgakd~~AI~RvE~LCPFPi~~LQa~l~kY~~vqdfvWSQEEprNmGaWsFVrPRFEn~lg-------~~L~~ 883 (913)
T KOG0451|consen 811 LAKEREKRGAKDTVAILRVESLCPFPIQELQAQLAKYGNVQDFVWSQEEPRNMGAWSFVRPRFENLLG-------QQLHY 883 (913)
T ss_pred HHHHHHhcccccceeeEehhhcCCCchHHHHHHHHhcCChhhhcccccccccCCcceeechHHHHHhh-------hhhee
Confidence 99999998654 4899999999999999999999999999 999999999999999999999999874 68999
Q ss_pred EcCCCCcCCCcccHHHHHHHHHHHHHHhcC
Q 001713 984 VGRAPSAASATGFYQVHVKEQSELMQKAIQ 1013 (1021)
Q Consensus 984 vgr~~~~~pa~g~~~~h~~e~~~i~~~a~~ 1013 (1021)
+|||+.|.||||..++|+.|.++|+.+.|.
T Consensus 884 ~GRpelp~pAtgIG~vH~~e~eeiva~tFa 913 (913)
T KOG0451|consen 884 CGRPELPTPATGIGKVHKREVEEIVAATFA 913 (913)
T ss_pred cCCCCCCCccccchhhhhhhHHHHHhhccC
Confidence 999999999999999999999999998874
No 7
>cd02016 TPP_E1_OGDC_like Thiamine pyrophosphate (TPP) family, E1 of OGDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the 2-oxoglutarate dehydrogenase multienzyme complex (OGDC). OGDC catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA and carbon dioxide, a key reaction of the tricarboxylic acid cycle.
Probab=100.00 E-value=1.1e-75 Score=632.89 Aligned_cols=265 Identities=69% Similarity=1.101 Sum_probs=250.6
Q ss_pred HHHHHHHHHhcCcccccCCccchHHHHHHHHHHHhhCCCCcEEEcCCcccHHHHHHHhcCCCHHHHHHHhcCCCCCCCCC
Q 001713 249 FENFLATKWTTAKRFGLEGGETLIPGMKEMFDRAADLGVESIVIGMPHRGRLNVLGNVVRKPLRQIFSEFSGGTRPVDEV 328 (1021)
Q Consensus 249 fE~~l~~~~~~~Krfg~eG~Ea~i~gl~~~l~~a~~~g~~D~vigm~HRgrln~La~v~g~~~~~if~Ef~G~~~~~~~G 328 (1021)
||+||++||+++||||++|+|+++|+++.+|+.+++.|++|+++||+||||+|+|+|++|+|+++||+||+|+.+.+..
T Consensus 1 ~e~f~~~~f~~~krfs~eG~Es~~~~l~~~~~~~~~~~~~d~v~gm~HRgrln~L~~~lg~~~~~if~ef~g~~~~~~~- 79 (265)
T cd02016 1 FEQFLATKFPGQKRFGLEGAESLIPALDELIDRAAELGVEEVVIGMAHRGRLNVLANVLGKPLEQIFSEFEGKSEFPED- 79 (265)
T ss_pred ChhhHHHhcCCCeEEEecCHHHHHHHHHHHHHHHHhcCCCeEEeccCcCCcHHHHHHHhCCCHHHHHHHhhCCCCCCCC-
Confidence 7999999999999999999999999999999999999999999999999999999999999999999999998763221
Q ss_pred CcccCCCCccccccccCCCCCCCCcceeeeeccccCCcccccceeehHHHHhHHhcCCCCCCCcEEEEEeCccccCCccH
Q 001713 329 GLYTGTGDVKYHLGTSYDRPTRGGKRIHLSLVANPSHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGV 408 (1021)
Q Consensus 329 ~~~gGsgDvkyHlg~s~~~~~~~g~~i~l~l~~npShlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDgA~sGqG~ 408 (1021)
..++||||||+|++.++.+.+|+.|+++|++||||||+++|+|+|+|+|.|+++++...++.|+|++|||||++|||+
T Consensus 80 --~~~~gdv~yHlg~~~~~~~~~~~~~~~~l~~npS~l~~~~pva~G~A~A~k~~~~~~~~~~~v~v~~~GDgA~~~qG~ 157 (265)
T cd02016 80 --DEGSGDVKYHLGYSSDRKTPSGKKVHLSLAPNPSHLEAVNPVVMGKTRAKQDYRGDGERDKVLPILIHGDAAFAGQGV 157 (265)
T ss_pred --CCCCCCcCcCCccCcccccCCCCeeEEEecCCCcccccccCeehhHHHHHHHhcCCccCCCeEEEEEecCccccCCCh
Confidence 135799999999887777766888999999999999999999999999999998654556799999999999988999
Q ss_pred HHHHHHhcCCCCCCcccEEEEEEcCCcccccCCCCCcccccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCC
Q 001713 409 VYETLHLSALPNYSIGGTIHIVVNNQVAFTTDPMSGRSSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHS 488 (1021)
Q Consensus 409 v~EalnlA~LP~y~~GGvI~Vv~NNq~g~tT~~~~~rs~~~~sd~Aka~g~p~~~VdG~D~eAV~~a~~~A~e~rr~~~g 488 (1021)
|||+||||+||+|.|||+||||+||||||||++++++++.+++|+|++||+|++||||+||+||++|+++|++|+|+|+|
T Consensus 158 ~~EalNlA~l~~lp~gg~ifvveNNq~g~sT~~~~~~~~~~~~~~a~~~gip~~~VdG~D~~aV~~a~~~A~~~~r~g~g 237 (265)
T cd02016 158 VYETLNLSNLPGYTTGGTIHIVVNNQIGFTTDPRDSRSSPYCTDVAKMIGAPIFHVNGDDPEAVVRATRLALEYRQKFKK 237 (265)
T ss_pred HHHHHHHHHhcCCCCCCEEEEEEeCCEEEEecHHHhcccccHHHHHeecCCCEEEEcCCCHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEeeeccCCCCCCCCCCCCCHHHH
Q 001713 489 DVVVDLVCYRRFGHNEIDEPSFTQPKMY 516 (1021)
Q Consensus 489 PvlIe~vtYR~~GHne~Ddp~ytqp~ey 516 (1021)
|+|||++|||++|||++|+|+||||.||
T Consensus 238 p~lIe~~tYR~~GHse~D~p~~t~p~my 265 (265)
T cd02016 238 DVVIDLVCYRRHGHNELDEPSFTQPLMY 265 (265)
T ss_pred CEEEEEEEecCCCCCCcCCccccCCCcC
Confidence 9999999999999999999999999997
No 8
>COG1071 AcoA Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion]
Probab=100.00 E-value=5e-66 Score=574.15 Aligned_cols=316 Identities=19% Similarity=0.276 Sum_probs=290.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccc----CCccchHHHHHHHHHHHhhCCCCcEEEcCCcccHHHHHH
Q 001713 229 MQYNRQRREVILDRLVWSTQFENFLATKWTTAKRFGL----EGGETLIPGMKEMFDRAADLGVESIVIGMPHRGRLNVLG 304 (1021)
Q Consensus 229 ~~ls~e~~~~i~~~M~~ar~fE~~l~~~~~~~Krfg~----eG~Ea~i~gl~~~l~~a~~~g~~D~vigm~HRgrln~La 304 (1021)
..+++++++++|++|+++|.||+++..++++||..|+ .|||++++|+..+|++. +||++ ++||+|+++|+
T Consensus 22 ~~~~~~~l~~~y~~M~l~R~fd~k~~~l~r~G~i~gf~~~~~GqEA~~vg~~~aL~~~-----~D~i~-~~YR~h~~~l~ 95 (358)
T COG1071 22 AALSKEELLELYRLMLLIRRFDEKMLQLQRQGKIGGFYHLYIGQEAVQVGAAAALRPG-----EDWIF-PTYRDHGHLLA 95 (358)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCcCCcccHHHHHHHHHHhcCCC-----CCEee-cccCcccccee
Confidence 3689999999999999999999999999999998864 99999999999999751 59999 69999999999
Q ss_pred HhcCCCHHHHHHHhcCCCCCCCCCCcccCCCCccccccccCCCCCCCCcceeeeeccccCCcccccceeehHHHHhHHhc
Q 001713 305 NVVRKPLRQIFSEFSGGTRPVDEVGLYTGTGDVKYHLGTSYDRPTRGGKRIHLSLVANPSHLEAVDPVVIGKTRAKQYYS 384 (1021)
Q Consensus 305 ~v~g~~~~~if~Ef~G~~~~~~~G~~~gGsgDvkyHlg~s~~~~~~~g~~i~l~l~~npShlg~~~PvA~G~A~A~q~~~ 384 (1021)
+ |+|+.+||+|++|+.+|+|+| ++|+ +|++ ++..+++ +.++++|+|+|+|+|+|+|.|+++
T Consensus 96 ~--G~~~~~~~a~~~G~~~g~~kG--r~~~----~h~~-~~~~~~~----------~~~~iVg~Q~~~AaG~A~a~k~~~ 156 (358)
T COG1071 96 R--GVPLKEIMAELLGKATGPCKG--RGGS----MHYS-DKEKGFL----------GGSGIVGTQIPLAAGAALALKYRG 156 (358)
T ss_pred c--CCCHHHHHHHHhccccCCCCC--CCCc----cccc-ccccccC----------CCCceecccccHHHHHHHHHHHhC
Confidence 9 999999999999999999985 5566 9996 6655554 445679999999999999999988
Q ss_pred CCCCCCCcEEEEEeCccccCCccHHHHHHHhc---CCCCCCcccEEEEEEcCCcccccCCCCCcccccHHHHHhhcCccE
Q 001713 385 NDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS---ALPNYSIGGTIHIVVNNQVAFTTDPMSGRSSQYCTDVAKALDAPI 461 (1021)
Q Consensus 385 ~d~~~~~~v~v~~~GDgA~sGqG~v~EalnlA---~LP~y~~GGvI~Vv~NNq~g~tT~~~~~rs~~~~sd~Aka~g~p~ 461 (1021)
++ +.|++|++||||++ ||.|||+|||| +|| +||+|+|||||||++...+...+.++.+|.+||||+
T Consensus 157 ~~----~~Va~~~~GDGat~-qG~FhEalN~A~v~klP------vvf~ieNN~yAiSvp~~~q~~~~~~~~ra~aygipg 225 (358)
T COG1071 157 TK----DGVAVAFFGDGATN-QGDFHEALNFAAVWKLP------VVFVIENNQYAISVPRSRQTAAEIIAARAAAYGIPG 225 (358)
T ss_pred CC----CcEEEEEecCCccc-cchHHHHHHHHHHhcCC------EEEEEecCCceeecchhhcccchhHHhhhhccCCCe
Confidence 54 25999999999999 99999999999 999 999999999999988776777777888999999999
Q ss_pred EEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeeeccCCCCCCCCCC-CCCHHHHHHHHhCCCHHHHHHHHHHHccCCC
Q 001713 462 FHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYRRFGHNEIDEPS-FTQPKMYKIIRSHPSSLEIYQNKLLECQHVT 540 (1021)
Q Consensus 462 ~~VdG~D~eAV~~a~~~A~e~rr~~~gPvlIe~vtYR~~GHne~Ddp~-ytqp~ey~~i~~~~dpi~~y~~~Li~~Gi~t 540 (1021)
+.|||+|+.||+.++++|++++|++++|+|||++|||+.|||++|+|+ ||+++|.++|+ ++|||.+++++|++.|++|
T Consensus 226 v~VDG~D~~avy~~~~~A~e~AR~g~GPtLIE~~tYR~~~HS~sDd~~~YRskeE~~~~~-~~DPi~r~~~~L~~~g~~s 304 (358)
T COG1071 226 VRVDGNDVLAVYEAAKEAVERARAGEGPTLIEAVTYRYGGHSTSDDPSKYRSKEEVEEWK-KRDPIVRLRKYLIEAGILS 304 (358)
T ss_pred EEECCcCHHHHHHHHHHHHHHHHcCCCCEEEEEEEeecCCCCCCCCccccCCHHHHHHHh-ccChHHHHHHHHHHcCCCC
Confidence 999999999999999999999999999999999999999999999965 99999999996 5999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHchhcC-CCccchhhhhccCCC
Q 001713 541 QEDINKIQEKVNRILSEEFVASKDYV-PNRRDWLSAYWSGFK 581 (1021)
Q Consensus 541 ~ee~~~i~~~~~~~l~~a~~~A~~~~-p~~~~~~~~~~~~~~ 581 (1021)
++++++|+++++++|++|+++|++.+ |++.++++++|.+++
T Consensus 305 ee~~~~i~~e~~~~V~ea~e~a~~~p~P~~~~~~~~Vy~~~~ 346 (358)
T COG1071 305 EEELEAIEAEAKAEVDEAVEFAEASPYPDVSELFEDVYAEGP 346 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCChhHhhhcccccCC
Confidence 99999999999999999999999987 888888999987643
No 9
>PLN02269 Pyruvate dehydrogenase E1 component subunit alpha
Probab=100.00 E-value=5.5e-62 Score=550.34 Aligned_cols=310 Identities=20% Similarity=0.339 Sum_probs=283.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccc----cCCccchHHHHHHHHHHHhhCCCCcEEEcCCcccHHHHHH
Q 001713 229 MQYNRQRREVILDRLVWSTQFENFLATKWTTAKRFG----LEGGETLIPGMKEMFDRAADLGVESIVIGMPHRGRLNVLG 304 (1021)
Q Consensus 229 ~~ls~e~~~~i~~~M~~ar~fE~~l~~~~~~~Krfg----~eG~Ea~i~gl~~~l~~a~~~g~~D~vigm~HRgrln~La 304 (1021)
..+++|+++++|+.|+++|.||+++..+|++++..| ..|||++.+|+..+|+. +|+++ ++||+|+++|+
T Consensus 25 ~~~~~~~ll~~yr~M~~~R~~e~~~~~l~~~g~i~g~~~~~~GqEA~~vg~~~aL~~------~D~~~-~~yR~hg~~la 97 (362)
T PLN02269 25 VETSKQELVDFFRDMYLMRRMEIAADSLYKAKLIRGFCHLYDGQEAVAVGMEAAITK------EDAII-TAYRDHCTHLG 97 (362)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCCChHHHHHHHHHhcCC------CCEEE-echhhHHHHHH
Confidence 468999999999999999999999999999998755 49999999999999975 79999 59999999999
Q ss_pred HhcCCCHHHHHHHhcCCCCCCCCCCcccCCCCccccccccCCCCCCCCcceeeeeccccCCcccccceeehHHHHhHHhc
Q 001713 305 NVVRKPLRQIFSEFSGGTRPVDEVGLYTGTGDVKYHLGTSYDRPTRGGKRIHLSLVANPSHLEAVDPVVIGKTRAKQYYS 384 (1021)
Q Consensus 305 ~v~g~~~~~if~Ef~G~~~~~~~G~~~gGsgDvkyHlg~s~~~~~~~g~~i~l~l~~npShlg~~~PvA~G~A~A~q~~~ 384 (1021)
+ |.++.++|+|++|+.+|.++| +||| +|++ +.+. ++++..|+||+++|+|+|+|+|.|+++
T Consensus 98 ~--G~~~~~~~ae~~g~~~g~~~G--rggs----mH~~-~~~~----------~~~~~~~~vG~~~p~A~G~A~A~k~~~ 158 (362)
T PLN02269 98 R--GGTVLEVFAELMGRKDGCSRG--KGGS----MHFY-KKDA----------NFYGGHGIVGAQVPLGAGLAFAQKYNK 158 (362)
T ss_pred c--CCCHHHHHHHHcCCCCCCCCC--CCCc----cccc-chhc----------CccccCchhhccccHHHHHHHHHHHhC
Confidence 9 999999999999999998875 6676 9996 5543 456667889999999999999999987
Q ss_pred CCCCCCCcEEEEEeCccccCCccHHHHHHHhc---CCCCCCcccEEEEEEcCCcccccCCCCCcccccHHHHHhhcCccE
Q 001713 385 NDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS---ALPNYSIGGTIHIVVNNQVAFTTDPMSGRSSQYCTDVAKALDAPI 461 (1021)
Q Consensus 385 ~d~~~~~~v~v~~~GDgA~sGqG~v~EalnlA---~LP~y~~GGvI~Vv~NNq~g~tT~~~~~rs~~~~sd~Aka~g~p~ 461 (1021)
.+ .+++|+||||+++ ||.|||+|||| +|| +||||+|||||+||+...+.....+++ +++++|+
T Consensus 159 ~~-----~v~v~~~GDGa~~-eG~~~Ealn~A~~~~lP------vvfvveNN~~aist~~~~~~~~~~~~~--~~~~~p~ 224 (362)
T PLN02269 159 EE-----NVAFALYGDGAAN-QGQLFEALNIAALWDLP------VIFVCENNHYGMGTAEWRAAKSPAYYK--RGDYVPG 224 (362)
T ss_pred CC-----CeEEEEECCCCcc-cCHHHHHHHHhhccCcC------EEEEEeCCCEeccCchhhhccchHHHH--hhcCCCe
Confidence 65 8999999999987 99999999999 899 999999999999998776665555654 4578999
Q ss_pred EEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeeeccCCCCCCCCC-CCCCHHHHHHHHhCCCHHHHHHHHHHHccCCC
Q 001713 462 FHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYRRFGHNEIDEP-SFTQPKMYKIIRSHPSSLEIYQNKLLECQHVT 540 (1021)
Q Consensus 462 ~~VdG~D~eAV~~a~~~A~e~rr~~~gPvlIe~vtYR~~GHne~Ddp-~ytqp~ey~~i~~~~dpi~~y~~~Li~~Gi~t 540 (1021)
++|||+|+++|++|++.|++++|+ +||+|||++|||++|||++|++ .||+|+|++.|++++||+.+|+++|+++|++|
T Consensus 225 ~~VDG~D~~av~~a~~~A~~~aR~-~gP~lIe~~tyR~~gHs~~D~~~~YR~~~E~~~~~~~~DPi~~~~~~L~~~g~~t 303 (362)
T PLN02269 225 LKVDGMDVLAVKQACKFAKEHALS-NGPIVLEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERVRKLLLAHELAT 303 (362)
T ss_pred EEECCCCHHHHHHHHHHHHHHHHh-CCCEEEEEecCcCCCcCCCCCCcccCCHHHHHHHHhCCCHHHHHHHHHHHcCCCC
Confidence 999999999999999999999999 9999999999999999999987 69999999999878999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHchhcC-CCccchhhhhccC
Q 001713 541 QEDINKIQEKVNRILSEEFVASKDYV-PNRRDWLSAYWSG 579 (1021)
Q Consensus 541 ~ee~~~i~~~~~~~l~~a~~~A~~~~-p~~~~~~~~~~~~ 579 (1021)
++++++++++++++|++++++|++.| |++.+.++++|..
T Consensus 304 e~e~~~i~~e~~~~v~~a~~~A~~~p~P~~~~~~~~vy~~ 343 (362)
T PLN02269 304 EAELKDIEKEIRKEVDDAVAKAKESPMPDPSELFTNVYVK 343 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHhhcccC
Confidence 99999999999999999999999987 8888899999874
No 10
>PF00676 E1_dh: Dehydrogenase E1 component; InterPro: IPR001017 This entry includes a number of dehydrogenases all of which use thiamine pyrophosphate as a cofactor and are members of a multienzyme complex. Pyruvate dehydrogenase (1.2.4.1 from EC), a component of the multienzyme pyruvate dehydrogenase complex; 2-oxoglutarate dehydrogenase (1.2.4.2 from EC), a component of the multienzyme 2-oxoglutarate dehydrogenase which contains multiple copies of three enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3); and 2-oxoisovalerate dehydrogenase (1.2.4.4 from EC), a component of the multienzyme branched-chain alpha-keto dehydrogenase complex all belong to this family.; GO: 0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, 0008152 metabolic process; PDB: 1X7Y_A 1V1M_A 1X7W_A 1OLU_A 2J9F_A 2BEW_A 1V11_A 2BFE_A 1U5B_A 2BEU_A ....
Probab=100.00 E-value=2.5e-62 Score=542.90 Aligned_cols=290 Identities=27% Similarity=0.403 Sum_probs=256.4
Q ss_pred HHHHHHHHHHHHHHHHHhcCccccc----CCccchHHHHHHHHHHHhhCCCCcEEEcCCcccHHHHHHHhcCCCHHHHHH
Q 001713 241 DRLVWSTQFENFLATKWTTAKRFGL----EGGETLIPGMKEMFDRAADLGVESIVIGMPHRGRLNVLGNVVRKPLRQIFS 316 (1021)
Q Consensus 241 ~~M~~ar~fE~~l~~~~~~~Krfg~----eG~Ea~i~gl~~~l~~a~~~g~~D~vigm~HRgrln~La~v~g~~~~~if~ 316 (1021)
++|+++|.||+.+..+|..+|++|+ .|||++.+|+..++++ +||++ ++||||+++|++ |.++.++|+
T Consensus 1 y~~m~~~r~~d~~~~~~~~~~~~g~~~~~~GqEa~~v~~~~~l~~------~D~v~-~~yR~~~~~la~--g~~~~~~~~ 71 (300)
T PF00676_consen 1 YRMMLIRRFEDERARKLQRQGRFGFYHLSAGQEAIQVAAAAALRP------GDWVF-PYYRDHGHALAR--GIDLEEIFA 71 (300)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSSSCTT-TTTCHHHHHHHHHHSCT------TSEEE-ECSTTHHHHHHT--TT-HHHHHH
T ss_pred CchHHHHHHHHHHHHHHhhCCCeEEecchHHHHHHHHHHHHhccC------CCEEE-ecccchhhhhhc--cccccchhH
Confidence 4688888899999999999999875 9999999999988876 79999 589999999999 999999999
Q ss_pred HhcCCCCCCCCCCcccCCCCccccccccCCCCCCCCcceeeeeccccCCcccccceeehHHHHhHHhcCCCCCCCcEEEE
Q 001713 317 EFSGGTRPVDEVGLYTGTGDVKYHLGTSYDRPTRGGKRIHLSLVANPSHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVL 396 (1021)
Q Consensus 317 Ef~G~~~~~~~G~~~gGsgDvkyHlg~s~~~~~~~g~~i~l~l~~npShlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~ 396 (1021)
|++|+..+. +|++. +.|.+ ++. +++++.+|++|+++|+|+|.|+|.|+++.+ .|+||
T Consensus 72 e~~g~~~g~------~g~~~-~~~~~-~~~----------~~~~~~~~~vg~~~p~a~G~A~a~k~~~~~-----~v~v~ 128 (300)
T PF00676_consen 72 ELLGKAKGH------GGGRH-PLHFS-DKG----------LNILGASSPVGAQVPIAAGVALAIKYRGKD-----GVVVC 128 (300)
T ss_dssp HHHTBTTST------TTTGC-TTEEE-BTT----------TTBEEEESSTTTHHHHHHHHHHHHHHTTSS-----EEEEE
T ss_pred HhcCcccCC------CCCcc-ccccc-ccc----------ceeeeccccccccCccccchhHhhhhcCCc-----eeEEE
Confidence 999998443 45655 56664 222 256788899999999999999999987765 99999
Q ss_pred EeCccccCCccHHHHHHHhc---CCCCCCcccEEEEEEcCCcccccCCCCCcccccHHHHHhhcCccEEEEeCCCHHHHH
Q 001713 397 IHGDGSFAGQGVVYETLHLS---ALPNYSIGGTIHIVVNNQVAFTTDPMSGRSSQYCTDVAKALDAPIFHVNGDDMEAVA 473 (1021)
Q Consensus 397 ~~GDgA~sGqG~v~EalnlA---~LP~y~~GGvI~Vv~NNq~g~tT~~~~~rs~~~~sd~Aka~g~p~~~VdG~D~eAV~ 473 (1021)
+|||||++ ||+|||+|||| +|| +||||+||||||||+...++++.+++++|++||+|+++|||+|+++|+
T Consensus 129 ~~GDga~~-qG~~~EalN~A~~~~lP------vifvveNN~~aist~~~~~~~~~~~~~~a~~~gip~~~VDG~D~~av~ 201 (300)
T PF00676_consen 129 FFGDGATS-QGDFHEALNLAALWKLP------VIFVVENNQYAISTPTEEQTASPDIADRAKGYGIPGIRVDGNDVEAVY 201 (300)
T ss_dssp EEETGGGG-SHHHHHHHHHHHHTTTS------EEEEEEEESEETTEEHHHHCSSSTSGGGGGGTTSEEEEEETTSHHHHH
T ss_pred EecCcccc-cCccHHHHHHHhhccCC------eEEEEecCCcccccCccccccccchhhhhhccCCcEEEECCEeHHHHH
Confidence 99999976 99999999999 999 999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHccCCCEEEEEeeeccCCCCCCCCCCCCC-HHHHHHHHhCCCHHHHHHHHHHHccCCCHHHHHHHHHHHH
Q 001713 474 HVCELAAEWRQTFHSDVVVDLVCYRRFGHNEIDEPSFTQ-PKMYKIIRSHPSSLEIYQNKLLECQHVTQEDINKIQEKVN 552 (1021)
Q Consensus 474 ~a~~~A~e~rr~~~gPvlIe~vtYR~~GHne~Ddp~ytq-p~ey~~i~~~~dpi~~y~~~Li~~Gi~t~ee~~~i~~~~~ 552 (1021)
+|+++|++|+|+|+||+|||++|||++|||++|+|.+|+ |+||+.|++++||+.+|+++|+++|++|++++++|+++++
T Consensus 202 ~a~~~A~~~~R~g~gP~lie~~tyR~~gHs~~Dd~~~yr~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~~~~~i~~e~~ 281 (300)
T PF00676_consen 202 EAAKEAVEYARAGKGPVLIEAVTYRLRGHSESDDPTFYRSPEEYEEWWKKRDPIKRFRRYLIEEGVLTEEELDAIEAEIK 281 (300)
T ss_dssp HHHHHHHHHHHTTT--EEEEEEE--SS-SSTTSCGGGTSHHHHHHHHHHCT-HHHHHHHHHHHTTSS-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCEEEEEeeccCCCCCCCCCccccCCHHHHHHHHhcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998655 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHchhcC-CCc
Q 001713 553 RILSEEFVASKDYV-PNR 569 (1021)
Q Consensus 553 ~~l~~a~~~A~~~~-p~~ 569 (1021)
++|++++++|++.+ |++
T Consensus 282 ~~v~~a~~~a~~~p~p~~ 299 (300)
T PF00676_consen 282 AEVEEAVEFAEASPEPDP 299 (300)
T ss_dssp HHHHHHHHHHHHSHBC-G
T ss_pred HHHHHHHHHHHhCCCCCC
Confidence 99999999999876 543
No 11
>PLN02374 pyruvate dehydrogenase (acetyl-transferring)
Probab=100.00 E-value=1e-60 Score=549.55 Aligned_cols=318 Identities=20% Similarity=0.330 Sum_probs=291.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccc----CCccchHHHHHHHHHHHhhCCCCcEEEcCCcccHHHHHH
Q 001713 229 MQYNRQRREVILDRLVWSTQFENFLATKWTTAKRFGL----EGGETLIPGMKEMFDRAADLGVESIVIGMPHRGRLNVLG 304 (1021)
Q Consensus 229 ~~ls~e~~~~i~~~M~~ar~fE~~l~~~~~~~Krfg~----eG~Ea~i~gl~~~l~~a~~~g~~D~vigm~HRgrln~La 304 (1021)
+.+++|+++++|++|+++|.||+++..+|++||++|+ .|||++++|+..+|++ +||+++ +||+|+++|+
T Consensus 81 ~~ls~e~ll~lyr~M~~~R~fEe~~~~l~~~Gki~g~~h~~~GqEA~~vg~~~aL~~------~D~v~~-~yR~h~~~La 153 (433)
T PLN02374 81 LLVTREEGLELYEDMVLGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKK------DDSVVS-TYRDHVHALS 153 (433)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceeccCCCCCcHHHHHHHHHHcCC------CCEEEc-cCcChHHhhh
Confidence 5799999999999999999999999999999999875 9999999999999986 799995 9999999999
Q ss_pred HhcCCCHHHHHHHhcCCCCCCCCCCcccCCCCccccccccCCCCCCCCcceeeeeccccCCcccccceeehHHHHhHHhc
Q 001713 305 NVVRKPLRQIFSEFSGGTRPVDEVGLYTGTGDVKYHLGTSYDRPTRGGKRIHLSLVANPSHLEAVDPVVIGKTRAKQYYS 384 (1021)
Q Consensus 305 ~v~g~~~~~if~Ef~G~~~~~~~G~~~gGsgDvkyHlg~s~~~~~~~g~~i~l~l~~npShlg~~~PvA~G~A~A~q~~~ 384 (1021)
+ |+++.+||+|++|+.++.++| +||| ||++ +.+.++++ ..++||.++|+|+|+|+|.|+++
T Consensus 154 ~--G~~~~~~mael~Gk~~g~~~G--rggs----mH~~-~~~~~~~g----------~~g~lG~~lP~AvGaA~A~k~~~ 214 (433)
T PLN02374 154 K--GVPARAVMSELFGKATGCCRG--QGGS----MHMF-SKEHNLLG----------GFAFIGEGIPVATGAAFSSKYRR 214 (433)
T ss_pred c--CCCHHHHHHHHcCCCCCCCCC--CCCc----CccC-chhhCCCC----------CceeccCchhHHHHHHHHHHHhh
Confidence 9 999999999999999998875 5665 9995 66655544 44679999999999999999976
Q ss_pred CCC--CCCCcEEEEEeCccccCCccHHHHHHHhc---CCCCCCcccEEEEEEcCCcccccCCCCCcccccHHHHHhhcCc
Q 001713 385 NDM--DRTKNMAVLIHGDGSFAGQGVVYETLHLS---ALPNYSIGGTIHIVVNNQVAFTTDPMSGRSSQYCTDVAKALDA 459 (1021)
Q Consensus 385 ~d~--~~~~~v~v~~~GDgA~sGqG~v~EalnlA---~LP~y~~GGvI~Vv~NNq~g~tT~~~~~rs~~~~sd~Aka~g~ 459 (1021)
+.. ...+.++||++|||+++ +|.|||+||+| +|| +||||+||+|+++|+...+++.++++++|++||+
T Consensus 215 ~~~~~~~~~~vvv~~~GDGa~~-eG~f~EaLn~A~~~~LP------vIfVV~NN~yaig~~~~~~t~~~dia~~A~a~G~ 287 (433)
T PLN02374 215 EVLKEESCDDVTLAFFGDGTCN-NGQFFECLNMAALWKLP------IVFVVENNLWAIGMSHLRATSDPEIWKKGPAFGM 287 (433)
T ss_pred ccccccCCCCEEEEEECCCccc-cChHHHHHHHHHHhCCC------EEEEEeCCCEeecceeeeccCCCCHHHHHHhcCC
Confidence 411 12247999999999998 99999999999 999 9999999999999987777677889999999999
Q ss_pred cEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeeeccCCCCCCCCCCCCCHHHHHHHHhCCCHHHHHHHHHHHccCC
Q 001713 460 PIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYRRFGHNEIDEPSFTQPKMYKIIRSHPSSLEIYQNKLLECQHV 539 (1021)
Q Consensus 460 p~~~VdG~D~eAV~~a~~~A~e~rr~~~gPvlIe~vtYR~~GHne~Ddp~ytqp~ey~~i~~~~dpi~~y~~~Li~~Gi~ 539 (1021)
|+++|||+|+++|+++++.|++++|++++|+|||++|||++|||++|++.||+|+|++.|+ .+||+.+|+++|+++|++
T Consensus 288 ~~~~VDG~D~~av~~a~~~A~~~Ar~g~gP~LIe~~tyR~~GHs~~D~~~YR~~~e~~~~~-~~DPi~~~~~~L~~~gi~ 366 (433)
T PLN02374 288 PGVHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPDELRDPAEKAHYA-ARDPIAALKKYLIENGLA 366 (433)
T ss_pred cEEEECCCCHHHHHHHHHHHHHHHHHcCCCEEEEEEEEecCCcCCCCccccCCHHHHHHHH-cCCcHHHHHHHHHHcCCC
Confidence 9999999999999999999999999999999999999999999999999999999999996 699999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHchhcC-CCccchhhhhccCC
Q 001713 540 TQEDINKIQEKVNRILSEEFVASKDYV-PNRRDWLSAYWSGF 580 (1021)
Q Consensus 540 t~ee~~~i~~~~~~~l~~a~~~A~~~~-p~~~~~~~~~~~~~ 580 (1021)
|++++++|+++++++|++++++|++.+ |++.++++++|.+.
T Consensus 367 te~e~~~i~~~~~~~v~~a~~~A~~~p~P~~~~~~~~vy~~~ 408 (433)
T PLN02374 367 TEAELKAIEKKIDEVVEDAVEFADASPLPPRSQLLENVFADP 408 (433)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHhccccCC
Confidence 999999999999999999999998877 88888999999753
No 12
>TIGR03182 PDH_E1_alph_y pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=100.00 E-value=3e-60 Score=529.67 Aligned_cols=306 Identities=20% Similarity=0.311 Sum_probs=283.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcccc----cCCccchHHHHHHHHHHHhhCCCCcEEEcCCcccHHHHHHHhcC
Q 001713 233 RQRREVILDRLVWSTQFENFLATKWTTAKRFG----LEGGETLIPGMKEMFDRAADLGVESIVIGMPHRGRLNVLGNVVR 308 (1021)
Q Consensus 233 ~e~~~~i~~~M~~ar~fE~~l~~~~~~~Krfg----~eG~Ea~i~gl~~~l~~a~~~g~~D~vigm~HRgrln~La~v~g 308 (1021)
+|+++++|+.|+++|.||+++.+++++||..| ..|||++.+|++.+|++ +||++ ++||+|+.+|++ |
T Consensus 1 ~~~l~~~y~~M~~~R~~d~~~~~l~~~g~~~~~~~~~~GqEa~~vg~~~al~~------~D~~~-~~yR~~~~~la~--G 71 (315)
T TIGR03182 1 KEELLELYRDMLLIRRFEEKAGQLYGMGKIGGFCHLYIGQEAVAVGLIAALKP------DDYVI-TSYRDHGHALAR--G 71 (315)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHhCCccccccCCCCChHHHHHHHHHhCCC------CCEEE-echhhHHHHHHc--C
Confidence 47899999999999999999999999999765 49999999999999875 79999 599999999999 9
Q ss_pred CCHHHHHHHhcCCCCCCCCCCcccCCCCccccccccCCCCCCCCcceeeeeccccCCcccccceeehHHHHhHHhcCCCC
Q 001713 309 KPLRQIFSEFSGGTRPVDEVGLYTGTGDVKYHLGTSYDRPTRGGKRIHLSLVANPSHLEAVDPVVIGKTRAKQYYSNDMD 388 (1021)
Q Consensus 309 ~~~~~if~Ef~G~~~~~~~G~~~gGsgDvkyHlg~s~~~~~~~g~~i~l~l~~npShlg~~~PvA~G~A~A~q~~~~d~~ 388 (1021)
.++.++|+|++|+.+|.++| ++|+ +|++ +.+. ++++..+++|.++|+|+|+|+|.|+++.+
T Consensus 72 ~~~~~~~~~~~g~~~g~~~G--r~g~----~h~~-~~~~----------~~~~~~g~~G~~lp~AiGaa~A~~~~~~~-- 132 (315)
T TIGR03182 72 VPPKEVMAELTGRATGCSKG--KGGS----MHMF-DREK----------NFYGGHGIVGAQVPLATGLAFANKYRGND-- 132 (315)
T ss_pred CCHHHHHHHHcCCCCCCCCC--CCCC----CCcC-chhh----------CcccCcCcccccccHHHHHHHHHHHhCCC--
Confidence 99999999999999998865 5565 8996 5543 44556688999999999999999987655
Q ss_pred CCCcEEEEEeCccccCCccHHHHHHHhc---CCCCCCcccEEEEEEcCCcccccCCCCCcccccHHHHHhhcCccEEEEe
Q 001713 389 RTKNMAVLIHGDGSFAGQGVVYETLHLS---ALPNYSIGGTIHIVVNNQVAFTTDPMSGRSSQYCTDVAKALDAPIFHVN 465 (1021)
Q Consensus 389 ~~~~v~v~~~GDgA~sGqG~v~EalnlA---~LP~y~~GGvI~Vv~NNq~g~tT~~~~~rs~~~~sd~Aka~g~p~~~Vd 465 (1021)
.++||++|||+++ ||.|||+||+| +|| +||||+||+||++|+...+++.++++++|++||+|+++||
T Consensus 133 ---~~vv~~~GDGa~~-~g~~~ealn~A~~~~lP------vi~vv~NN~yg~s~~~~~~~~~~~~a~~A~a~G~~~~~Vd 202 (315)
T TIGR03182 133 ---NVTACFFGDGAAN-QGQFYESFNMAALWKLP------VIFVIENNLYAMGTSVERSSSVTDLYKRGESFGIPGERVD 202 (315)
T ss_pred ---CEEEEEeCCCccc-ccHHHHHHHHhhccCcC------EEEEEEcCCccccCCHHHHhCCcCHHHHHHhCCCCEEEEC
Confidence 8999999999997 99999999999 999 9999999999999998777778899999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHccCCCEEEEEeeeccCCCCCCCCCCCCCHHHHHHHHhCCCHHHHHHHHHHHccCCCHHHHH
Q 001713 466 GDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYRRFGHNEIDEPSFTQPKMYKIIRSHPSSLEIYQNKLLECQHVTQEDIN 545 (1021)
Q Consensus 466 G~D~eAV~~a~~~A~e~rr~~~gPvlIe~vtYR~~GHne~Ddp~ytqp~ey~~i~~~~dpi~~y~~~Li~~Gi~t~ee~~ 545 (1021)
|+|+++|+.+++.|++++|++++|+|||++|||++|||++|++.||+|+||+.|+ .+||+.+|+++|+++|++|+++++
T Consensus 203 g~d~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs~~D~~~Yr~~~e~~~~~-~~dPi~~~~~~L~~~g~~~~~~~~ 281 (315)
T TIGR03182 203 GMDVLAVREAAKEAVERARSGKGPILLEMKTYRFRGHSMSDPAKYRSKEEVEEWR-KRDPIEKLKARLIEQGIASEEELK 281 (315)
T ss_pred CCCHHHHHHHHHHHHHHHHccCCCEEEEEeCCcCCCCCCCCccccCCHHHHHHHH-hcCHHHHHHHHHHHCCCCCHHHHH
Confidence 9999999999999999999999999999999999999999999999999999997 699999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHchhcC-CCccchhhhhc
Q 001713 546 KIQEKVNRILSEEFVASKDYV-PNRRDWLSAYW 577 (1021)
Q Consensus 546 ~i~~~~~~~l~~a~~~A~~~~-p~~~~~~~~~~ 577 (1021)
+++++++++|+++++.|++.| |++.+.++++|
T Consensus 282 ~~~~~~~~~v~~a~~~a~~~p~p~~~~~~~~vy 314 (315)
T TIGR03182 282 EIDKEVRAEVEEAVEFAENSPEPPVEELYTDVY 314 (315)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCHHHHHhhcc
Confidence 999999999999999999987 78888887776
No 13
>COG0022 AcoB Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion]
Probab=100.00 E-value=1.6e-60 Score=511.91 Aligned_cols=308 Identities=18% Similarity=0.232 Sum_probs=274.4
Q ss_pred cCHHHHHHHHHHHHHhcCCcEEEEcccCCC--cccccccceeccCCcCceeccCCCcccccCCcccEEecCccchHHHHH
Q 001713 636 IDWALGEALAFATLLVEGNHVRLSGQDVER--GTFSHRHSVLHDQETGEQYCPLDHVMMNQDAEMFTVSNSSLSEFGVLG 713 (1021)
Q Consensus 636 idw~~AE~lA~~~ll~~~~~Vrl~GeDv~r--GtF~~RHavl~dq~t~~~y~pL~~L~~~~~~g~~rV~nspLSE~~vlG 713 (1021)
+...+|.+.|+...|++|++|+|+||||+. |+|+. | +||. ++||+.||+||||||.+++|
T Consensus 2 ~~~~eAi~~Am~~eM~rD~~V~v~GEDVg~~GGvf~~---------T-------~GL~--~kfG~~RV~DTPiaE~gi~G 63 (324)
T COG0022 2 MTMIEAINEAMDEEMERDERVVVLGEDVGVYGGVFRV---------T-------KGLQ--EKFGEERVIDTPIAESGIAG 63 (324)
T ss_pred ccHHHHHHHHHHHHHhcCCCEEEEcccccccCChhhh---------c-------hhHH--HHhCccceecCccchhhhHH
Confidence 456779999999999999999999999985 99999 8 9999 99999999999999999999
Q ss_pred HHHhhccCCCCcceEehhhhhhhHhhHHHHHHHHHhhhhhhhcC--ccceEEEeCccC-CCCCcCCcCchhhHhhhccCC
Q 001713 714 FELGYSMENPNSLVMWEAQFGDFANGAQVIFDQFVNSGESKWLR--QSGLVVMLPHGY-DGQGPEHSSARLERFLQMSDD 790 (1021)
Q Consensus 714 fe~G~a~~g~~~lviwEaqFgDF~n~Aq~~iDqfi~s~~~kw~~--~~~lV~~lPhG~-~G~GpeHSs~r~Er~Lql~~e 790 (1021)
.++|+|+.|.||++ |+||.||+..|.+||-+.+++.+++.+. .+|||+|.|.|. .+.|.+||++ +|.|
T Consensus 64 ~avGaA~~GlrPiv--Eiqf~dF~~~a~dqi~n~aAk~ryrsgG~~~~PiviR~p~G~g~~~~~~HSqs-~ea~------ 134 (324)
T COG0022 64 IAVGAALTGLRPIV--EIQFADFIYPAFDQIVNQAAKIRYRSGGQFTVPIVIRTPNGGGIGGGAQHSQS-LEAL------ 134 (324)
T ss_pred HHHHHHHcCCcceE--EEEecchhHHHHHHHHHHHHHHhhhcCCceeCCEEEEcCCCCCCCchhhccCC-HHHH------
Confidence 99999999999988 9999999999955555555556666664 689999999977 6889999999 9998
Q ss_pred CCCcccCCCchhhhcccccCeEEEecCCHHHHHHHHHHHHhcCCCCcEEEEeeccccCC-ccccCCcccccccCCCCCCC
Q 001713 791 NPYVIPEMDSTLRTQIQECNWQIVNVTTPANYFHVLRRQIHREFRKPLVVMSPKNLLRH-KECKSNLSEFDDVQGHPGFD 869 (1021)
Q Consensus 791 ~~~~~~~ipg~~~~~~~~~Nl~Vv~pstpad~fhlLrrqi~~~~~kPliv~~pK~Llr~-~~~~s~~~e~~~~~~~~~~~ 869 (1021)
|.|+|| |+||+||||+|+++||+.+|++ ++||||||||.|||. +..+ |.
T Consensus 135 ----f~h~PG----------lKVV~PStpyDAKGLL~aAIrd--~dPViflE~k~lY~~~~~eV-P~------------- 184 (324)
T COG0022 135 ----FAHIPG----------LKVVMPSTPYDAKGLLKAAIRD--PDPVIFLEHKRLYRSFKGEV-PE------------- 184 (324)
T ss_pred ----HhcCCC----------ceEEecCChHHHHHHHHHHhcC--CCCEEEEecHHHhcccccCC-CC-------------
Confidence 889999 9999999999999999999998 999999999999994 3322 22
Q ss_pred CCCCcceEeecCccccccCCCCCeEEEEeechhHHHHHHHHHHc--CCCcEEEEEecccCCCCHHHHHHHHHcCCCceEE
Q 001713 870 KQGTRFKRLIKDQNEHSDLEEGIRRLILCSGKVYYELYEERKKH--SASDIAICRVEQLCPFPYDLVQRELKRYPNAEVV 947 (1021)
Q Consensus 870 ~~~~~f~~vi~~~~~~~~~~~g~~~~Iv~~Gk~~~~l~~a~~~~--~~~~v~ii~le~L~Pfp~~~i~~~l~k~~~~~~v 947 (1021)
+.|. .++|+|.+.++|.|+|||+||.|++.++++++++ +++++||||||+|.|||+++|.+|++||+|+ |
T Consensus 185 ---~~Y~---iPlGkA~i~reG~DvTivtyg~mv~~al~AAe~l~~~Gis~EVIDLRTl~PlD~etIi~SvkKTgR~--v 256 (324)
T COG0022 185 ---EDYT---IPLGKAKIVREGSDVTIVTYGAMVHTALEAAEELEKEGISAEVIDLRTLSPLDKETIIASVKKTGRL--V 256 (324)
T ss_pred ---CCcc---ccccceeeEecCCceEEEEechHHHHHHHHHHHHhhcCCCeEEEeccccCccCHHHHHHHHHhhCcE--E
Confidence 3333 2567889999999999999999999999999886 4799999999999999999999999999999 9
Q ss_pred EEecCCcccchHhhHHHHHHHH-HHhhccCCCCcEEEEcCCCCcCC-CcccHHHHHHHHHHHHHHhc
Q 001713 948 WSQEEPMNMGAYTYIAPRLCTA-MKAVDRGTMEDIKYVGRAPSAAS-ATGFYQVHVKEQSELMQKAI 1012 (1021)
Q Consensus 948 wvqEe~~n~G~~~~v~~~i~~~-~~~l~~~~~~~~~~vgr~~~~~p-a~g~~~~h~~e~~~i~~~a~ 1012 (1021)
+|+|.++.+|++++|++.+.+. |..|+ +|+.+++-++.|.| +.-+++...+..++|++.+-
T Consensus 257 iV~Ea~~~~g~gaei~A~i~e~~f~~Ld----APi~Rv~g~d~P~p~~~~lE~~~lp~~~~I~~av~ 319 (324)
T COG0022 257 IVHEAPKTGGIGAEIAALIAEEAFDYLD----APILRVAGPDTPVPYSAALEKAYLPNPERIVAAVK 319 (324)
T ss_pred EEEeccccCChHHHHHHHHHHHHHHhhc----CchhhhcCCCCCCCcchhHHhhhCCCHHHHHHHHH
Confidence 9999999999999999999885 57886 79999999998884 44499999999999987653
No 14
>KOG0225 consensus Pyruvate dehydrogenase E1, alpha subunit [Energy production and conversion]
Probab=100.00 E-value=4.8e-60 Score=508.18 Aligned_cols=309 Identities=19% Similarity=0.309 Sum_probs=289.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccc----CCccchHHHHHHHHHHHhhCCCCcEEEcCCcccHHHHHH
Q 001713 229 MQYNRQRREVILDRLVWSTQFENFLATKWTTAKRFGL----EGGETLIPGMKEMFDRAADLGVESIVIGMPHRGRLNVLG 304 (1021)
Q Consensus 229 ~~ls~e~~~~i~~~M~~ar~fE~~l~~~~~~~Krfg~----eG~Ea~i~gl~~~l~~a~~~g~~D~vigm~HRgrln~La 304 (1021)
..+++|+.+.+|+.|+.+|.||.....+|...|++|+ .||||+.+|+..+|.. .|.||. +||+|+..+.
T Consensus 54 ~~~t~ee~L~~Y~~M~~~RrmE~aad~lYK~k~IRGFCHLy~GQEAvavGme~ait~------~D~iIt-sYR~Hg~~~~ 126 (394)
T KOG0225|consen 54 VELTKEEALKYYRDMQTIRRMELAADQLYKAKKIRGFCHLYDGQEAVAVGMEAAITK------SDSIIT-SYRCHGWTYL 126 (394)
T ss_pred EEecHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhceeeeecccHHHHHHHHHHhccC------CCceEE-EeeeeeEEee
Confidence 4689999999999999999999999999999999996 9999999999999986 588885 9999998887
Q ss_pred HhcCCCHHHHHHHhcCCCCCCCCCCcccCCCCccccccccCCCCCCCCcceeeeeccccCCcccccceeehHHHHhHHhc
Q 001713 305 NVVRKPLRQIFSEFSGGTRPVDEVGLYTGTGDVKYHLGTSYDRPTRGGKRIHLSLVANPSHLEAVDPVVIGKTRAKQYYS 384 (1021)
Q Consensus 305 ~v~g~~~~~if~Ef~G~~~~~~~G~~~gGsgDvkyHlg~s~~~~~~~g~~i~l~l~~npShlg~~~PvA~G~A~A~q~~~ 384 (1021)
+ |.++.+||+|++|+.+|+++| +||| |||. + .+|+||++| +|+|+|+++|+|+|.|+++
T Consensus 127 ~--G~S~~~v~aEL~Gr~~Gc~kG--KGGS----MHmy-~--k~FyGGnGI----------VGAQiPLGaGia~A~kY~~ 185 (394)
T KOG0225|consen 127 R--GVSVREVLAELMGRQAGCSKG--KGGS----MHMY-A--KNFYGGNGI----------VGAQIPLGAGIAFAQKYNR 185 (394)
T ss_pred c--CccHHHHHHHHhccccccccC--CCcc----eeee-c--ccccCccce----------eccCCCccccHHHHHHhcc
Confidence 7 999999999999999999987 6899 9995 4 359999987 9999999999999999998
Q ss_pred CCCCCCCcEEEEEeCccccCCccHHHHHHHhc---CCCCCCcccEEEEEEcCCcccccCCCCCcccccHHHHHhhcCccE
Q 001713 385 NDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS---ALPNYSIGGTIHIVVNNQVAFTTDPMSGRSSQYCTDVAKALDAPI 461 (1021)
Q Consensus 385 ~d~~~~~~v~v~~~GDgA~sGqG~v~EalnlA---~LP~y~~GGvI~Vv~NNq~g~tT~~~~~rs~~~~sd~Aka~g~p~ 461 (1021)
++ .|++++.||||.+ ||.++|++||| +|| +||||+||.||+.|+...+.+++....++ .| ||+
T Consensus 186 ~~-----~v~~alYGDGAaN-QGQ~fEa~NMA~LW~LP------~IFvCENN~yGMGTs~~Rasa~teyykRG-~y-iPG 251 (394)
T KOG0225|consen 186 ED-----AVCFALYGDGAAN-QGQVFEAFNMAALWKLP------VIFVCENNHYGMGTSAERASASTEYYKRG-DY-IPG 251 (394)
T ss_pred CC-----ceEEEEecccccc-chhHHHHhhHHHHhCCC------EEEEEccCCCccCcchhhhhcChHHHhcc-CC-CCc
Confidence 87 8999999999998 99999999999 999 99999999999999988877777777777 45 999
Q ss_pred EEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeeeccCCCCCCCC-CCCCCHHHHHHHHhCCCHHHHHHHHHHHccCCC
Q 001713 462 FHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYRRFGHNEIDE-PSFTQPKMYKIIRSHPSSLEIYQNKLLECQHVT 540 (1021)
Q Consensus 462 ~~VdG~D~eAV~~a~~~A~e~rr~~~gPvlIe~vtYR~~GHne~Dd-p~ytqp~ey~~i~~~~dpi~~y~~~Li~~Gi~t 540 (1021)
++|||+|+.+|..|++.|++|+++++||+++|+.|||++|||.+|+ .+||..+|.++.+.++|||..++++|++.++.|
T Consensus 252 l~VdGmdvlaVr~a~KfA~~~~~~g~GPilmE~~TYRy~GHSmSDPg~sYRtReEiq~vR~kRDPI~~lk~~li~~~lat 331 (394)
T KOG0225|consen 252 LKVDGMDVLAVREATKFAKKYALEGKGPILMEMDTYRYHGHSMSDPGTSYRTREEIQEVRQKRDPIEGLKKRLIELGLAT 331 (394)
T ss_pred eEECCcchhhHHHHHHHHHHHHhcCCCCEEEEEeeeeecccccCCCCcccchHHHHHHHHhccChHHHHHHHHHHhcccC
Confidence 9999999999999999999999999999999999999999999998 469999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHchhcC-CCccchhhhhccC
Q 001713 541 QEDINKIQEKVNRILSEEFVASKDYV-PNRRDWLSAYWSG 579 (1021)
Q Consensus 541 ~ee~~~i~~~~~~~l~~a~~~A~~~~-p~~~~~~~~~~~~ 579 (1021)
++|+++|+++++++|++++++|++.+ |.+.+++.++|..
T Consensus 332 e~ELKai~k~irkeVdeav~~A~~~p~p~~~eL~~dvy~~ 371 (394)
T KOG0225|consen 332 EEELKAIDKEIRKEVDEAVAFATASPEPEPSELFTDVYVK 371 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHhhcc
Confidence 99999999999999999999999987 6777788888753
No 15
>CHL00149 odpA pyruvate dehydrogenase E1 component alpha subunit; Reviewed
Probab=100.00 E-value=2.7e-58 Score=518.26 Aligned_cols=316 Identities=20% Similarity=0.277 Sum_probs=287.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccc----cCCccchHHHHHHHHHHHhhCCCCcEEEcCCcccHHHHHH
Q 001713 229 MQYNRQRREVILDRLVWSTQFENFLATKWTTAKRFG----LEGGETLIPGMKEMFDRAADLGVESIVIGMPHRGRLNVLG 304 (1021)
Q Consensus 229 ~~ls~e~~~~i~~~M~~ar~fE~~l~~~~~~~Krfg----~eG~Ea~i~gl~~~l~~a~~~g~~D~vigm~HRgrln~La 304 (1021)
..+|+|+++++|+.|+++|.||+.+.++|+++|..| ..|||++.+|++.+|++ +|+++ ++||+|+++|+
T Consensus 15 ~~~~~~~ll~~y~~M~~~R~~e~~~~~~~~~g~i~g~~~~~~GqEa~~vg~~~al~~------~D~~~-~~yR~~~~~la 87 (341)
T CHL00149 15 NNINSMWLLVLYEDMLLGRNFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGVIKLLAE------TDYVC-STYRDHVHALS 87 (341)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCCChHHHHHHHHHhCCC------CCEEE-cccccHHHHHH
Confidence 358999999999999999999999999999999755 49999999999999875 79999 59999999999
Q ss_pred HhcCCCHHHHHHHhcCCCCCCCCCCcccCCCCccccccccCCCCCCCCcceeeeeccccCCcccccceeehHHHHhHHhc
Q 001713 305 NVVRKPLRQIFSEFSGGTRPVDEVGLYTGTGDVKYHLGTSYDRPTRGGKRIHLSLVANPSHLEAVDPVVIGKTRAKQYYS 384 (1021)
Q Consensus 305 ~v~g~~~~~if~Ef~G~~~~~~~G~~~gGsgDvkyHlg~s~~~~~~~g~~i~l~l~~npShlg~~~PvA~G~A~A~q~~~ 384 (1021)
+ |+++.++|+|++|+.+|+++| +||| +|++ +.+.++. +..+++|.++|.|+|+|+|.++++
T Consensus 88 ~--G~~~~~~~ae~~g~~~g~~~G--r~gs----~H~~-~~~~~~~----------~~~g~lG~~lp~AvGaa~A~k~~~ 148 (341)
T CHL00149 88 K--GVPPKNVMAELFGKETGCSRG--RGGS----MHIF-SAPHNFL----------GGFAFIGEGIPIALGAAFQSIYRQ 148 (341)
T ss_pred c--CCCHHHHHHHHcCCCCCCCCC--CCCC----cccc-chhcCcc----------CCChhhhccHHHHHHHHHHHHHhc
Confidence 9 999999999999999998875 5666 8996 5554443 445789999999999999999876
Q ss_pred CC--CCCCCcEEEEEeCccccCCccHHHHHHHhc---CCCCCCcccEEEEEEcCCcccccCCCCCcccccHHHHHhhcCc
Q 001713 385 ND--MDRTKNMAVLIHGDGSFAGQGVVYETLHLS---ALPNYSIGGTIHIVVNNQVAFTTDPMSGRSSQYCTDVAKALDA 459 (1021)
Q Consensus 385 ~d--~~~~~~v~v~~~GDgA~sGqG~v~EalnlA---~LP~y~~GGvI~Vv~NNq~g~tT~~~~~rs~~~~sd~Aka~g~ 459 (1021)
.. ....+.++||++|||+++ +|.|||+||+| +|| +||||+||+|+++|+...+...++++++|++||+
T Consensus 149 ~~~~~~~~~~vvv~~~GDGa~~-~G~~~Ealn~A~~~~LP------vifvv~NN~~~i~~~~~~~~~~~d~a~~a~a~G~ 221 (341)
T CHL00149 149 QVLKEVQPLRVTACFFGDGTTN-NGQFFECLNMAVLWKLP------IIFVVENNQWAIGMAHHRSTSIPEIHKKAEAFGL 221 (341)
T ss_pred cccccCCCCCEEEEEeCCchhh-hcHHHHHHHHHhhcCCC------EEEEEEeCCeeeecchhheeCCccHHHHHHhCCC
Confidence 31 011248999999999998 99999999999 999 9999999999999988777777889999999999
Q ss_pred cEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeeeccCCCCCCCCCCCCCHHHHHHHHhCCCHHHHHHHHHHHccCC
Q 001713 460 PIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYRRFGHNEIDEPSFTQPKMYKIIRSHPSSLEIYQNKLLECQHV 539 (1021)
Q Consensus 460 p~~~VdG~D~eAV~~a~~~A~e~rr~~~gPvlIe~vtYR~~GHne~Ddp~ytqp~ey~~i~~~~dpi~~y~~~Li~~Gi~ 539 (1021)
|+++|||+|+++|+.+++.|++++|++++|+|||+.|||++||+++|++.||+++|.+.|+ ++||+.+|+++|+++|++
T Consensus 222 ~~~~Vdg~d~~av~~a~~~A~~~ar~~~gP~lIev~tyR~~gHs~~D~~~YR~~~e~~~~~-~~DPi~~~~~~L~~~g~~ 300 (341)
T CHL00149 222 PGIEVDGMDVLAVREVAKEAVERARQGDGPTLIEALTYRFRGHSLADPDELRSKQEKEAWV-ARDPIKKLKSYIIDNELA 300 (341)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHHhCCCCEEEEEEEecCCCcCCCCCccCCCHHHHHHHh-cCCHHHHHHHHHHHcCCC
Confidence 9999999999999999999999999999999999999999999999999999999999996 699999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHchhcC-CCccchhhhhcc
Q 001713 540 TQEDINKIQEKVNRILSEEFVASKDYV-PNRRDWLSAYWS 578 (1021)
Q Consensus 540 t~ee~~~i~~~~~~~l~~a~~~A~~~~-p~~~~~~~~~~~ 578 (1021)
|++++++++++++++|++++++|++.| |++.+.++++|.
T Consensus 301 ~~~~~~~i~~e~~~~v~~a~~~a~~~p~p~~~~~~~~vy~ 340 (341)
T CHL00149 301 SQKELNKIQREVKIEIEQAVQFAISSPEPNISDLKKYLFA 340 (341)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHhhccc
Confidence 999999999999999999999999987 888888888774
No 16
>cd02000 TPP_E1_PDC_ADC_BCADC Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC). PDC catalyzes the irreversible oxidative decarboxylation of pyruvate to produce acetyl-CoA in the bridging step between glycolysis and the citric acid cycle. ADC participates in the breakdown of acetoin while BCADC participates in the breakdown of branched chain amino acids. BCADC catalyzes the oxidative decarboxylation of 4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and 3-methyl-2-oxobutanoate (branched chain 2-oxo acids derived from the transamination of leucine, valine and isoleucine).
Probab=100.00 E-value=1.5e-55 Score=487.67 Aligned_cols=285 Identities=22% Similarity=0.312 Sum_probs=263.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCcccc----cCCccchHHHHHHHHHHHhhCCCCcEEEcCCcccHHHHHHHhcCCCHHHH
Q 001713 239 ILDRLVWSTQFENFLATKWTTAKRFG----LEGGETLIPGMKEMFDRAADLGVESIVIGMPHRGRLNVLGNVVRKPLRQI 314 (1021)
Q Consensus 239 i~~~M~~ar~fE~~l~~~~~~~Krfg----~eG~Ea~i~gl~~~l~~a~~~g~~D~vigm~HRgrln~La~v~g~~~~~i 314 (1021)
+|+.|+++|.||+++.++|++||..+ ..|||++.+|+..+|++ +|++++ +||+|+++|++ |+++.+|
T Consensus 1 ~y~~m~~~R~~e~~~~~~~~~g~~~~~~~~~~GqEa~~vg~~~~l~~------~D~~~~-~yR~~~~~la~--G~~~~~~ 71 (293)
T cd02000 1 LYRTMVLIRRFDERLLELYRQGKIGGFYHLSIGQEAVAVGVAAALRP------GDWVFP-TYRDHGHALAR--GVDLKEM 71 (293)
T ss_pred CHHHHHHHHHHHHHHHHHHHCCccccccCCCCChHHHHHHHHHHCCC------CCEEEe-cchhHHHHHHc--CCCHHHH
Confidence 59999999999999999999999877 59999999999999976 799995 99999999998 9999999
Q ss_pred HHHhcCCCCCCCCCCcccCCCCccccccccCCCCCCCCcceeeeeccccCCcccccceeehHHHHhHHhcCCCCCCCcEE
Q 001713 315 FSEFSGGTRPVDEVGLYTGTGDVKYHLGTSYDRPTRGGKRIHLSLVANPSHLEAVDPVVIGKTRAKQYYSNDMDRTKNMA 394 (1021)
Q Consensus 315 f~Ef~G~~~~~~~G~~~gGsgDvkyHlg~s~~~~~~~g~~i~l~l~~npShlg~~~PvA~G~A~A~q~~~~d~~~~~~v~ 394 (1021)
|+|++|+.+++++| ++|+ +|++ +.+ +++.+..+++|.++|+|+|+|+|.|+.+.+ .++
T Consensus 72 ~~e~~g~~~g~~~G--~~g~----~h~~-~~~----------~~~~~~~g~lG~~~p~a~G~a~a~k~~~~~-----~~v 129 (293)
T cd02000 72 LAELFGKETGPCKG--RGGS----MHIG-DKE----------KNFFGGNGIVGGQVPLAAGAALALKYRGED-----RVA 129 (293)
T ss_pred HHHHcCCCCCCCCC--CCCC----CCCC-chh----------cCccccccccccchhHHHHHHHHHHHhCCC-----CEE
Confidence 99999999998875 4454 8997 443 356777799999999999999999987665 899
Q ss_pred EEEeCccccCCccHHHHHHHhc---CCCCCCcccEEEEEEcCCcccccCCCCCcccccHHHHHhhcCccEEEEeCCCHHH
Q 001713 395 VLIHGDGSFAGQGVVYETLHLS---ALPNYSIGGTIHIVVNNQVAFTTDPMSGRSSQYCTDVAKALDAPIFHVNGDDMEA 471 (1021)
Q Consensus 395 v~~~GDgA~sGqG~v~EalnlA---~LP~y~~GGvI~Vv~NNq~g~tT~~~~~rs~~~~sd~Aka~g~p~~~VdG~D~eA 471 (1021)
||++||||++ ||.|+|+||+| +|| +||||+||+||++|+...+.+.++++++|++||+|+++|||+|+++
T Consensus 130 v~~~GDGa~~-~g~~~E~l~~A~~~~lP------vi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~~~~~Vdg~d~~~ 202 (293)
T cd02000 130 VCFFGDGATN-EGDFHEALNFAALWKLP------VIFVCENNGYAISTPTSRQTAGTSIADRAAAYGIPGIRVDGNDVLA 202 (293)
T ss_pred EEEeCCCccc-cchHHHHHHHHHhhCCC------EEEEEeeCCeeccCCHHHHhCCccHHHHHHhCCCCEEEECCCCHHH
Confidence 9999999997 99999999999 999 9999999999999988777677899999999999999999999999
Q ss_pred HHHHHHHHHHHHHccCCCEEEEEeeeccCCCCCCCCCC-CCCHHHHHHHHhCCCHHHHHHHHHHHccCCCHHHHHHHHHH
Q 001713 472 VAHVCELAAEWRQTFHSDVVVDLVCYRRFGHNEIDEPS-FTQPKMYKIIRSHPSSLEIYQNKLLECQHVTQEDINKIQEK 550 (1021)
Q Consensus 472 V~~a~~~A~e~rr~~~gPvlIe~vtYR~~GHne~Ddp~-ytqp~ey~~i~~~~dpi~~y~~~Li~~Gi~t~ee~~~i~~~ 550 (1021)
|+.+++.|++++|++++|+|||++|||.+|||++|||. ||+|+|++.|+ ++||+.+|+++|+++|++|++++++++++
T Consensus 203 v~~a~~~A~~~ar~~~~P~lIev~~~r~~gHs~~dd~~~Yr~~~e~~~~~-~~dpi~~~~~~L~~~g~~~~~~~~~~~~~ 281 (293)
T cd02000 203 VYEAAKEAVERARAGGGPTLIEAVTYRLGGHSTSDDPSRYRTKEEVEEWK-KRDPILRLRKYLIEAGILTEEELAAIEAE 281 (293)
T ss_pred HHHHHHHHHHHHHccCCCEEEEEEEeccCCCCCCCCcccCCCHHHHHHHh-cCCHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999885 89999999985 79999999999999999999999999999
Q ss_pred HHHHHHHHHHHc
Q 001713 551 VNRILSEEFVAS 562 (1021)
Q Consensus 551 ~~~~l~~a~~~A 562 (1021)
++++|++++++|
T Consensus 282 ~~~~v~~a~~~a 293 (293)
T cd02000 282 VKAEVEEAVEFA 293 (293)
T ss_pred HHHHHHHHHHhC
Confidence 999999999865
No 17
>TIGR03181 PDH_E1_alph_x pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=100.00 E-value=1.4e-53 Score=480.61 Aligned_cols=303 Identities=19% Similarity=0.226 Sum_probs=273.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccc----cCCccchHHHHHHHHHHHhhCCCCcEEEcCCcccHHHHHH
Q 001713 229 MQYNRQRREVILDRLVWSTQFENFLATKWTTAKRFG----LEGGETLIPGMKEMFDRAADLGVESIVIGMPHRGRLNVLG 304 (1021)
Q Consensus 229 ~~ls~e~~~~i~~~M~~ar~fE~~l~~~~~~~Krfg----~eG~Ea~i~gl~~~l~~a~~~g~~D~vigm~HRgrln~La 304 (1021)
+.+|+|+++++|+.|+++|.||+.+..+|+++|. | ..|||++.+|++.+|++ +|++++ +||+|+++|+
T Consensus 19 ~~~~~~~l~~~y~~m~~~R~~e~~~~~~~~~g~i-~~~~~~~GqEa~~vg~~~al~~------~D~~~~-~yR~h~~~l~ 90 (341)
T TIGR03181 19 PDLSDEELVELYRDMVLTRRFDTKALALQRQGRL-GTYAPNLGQEAAQVGSALALRK------DDWVFP-SYRDHAAMLA 90 (341)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCce-ecccCCCChHHHHHHHHHHcCC------CCEEEc-chhhHHHHHH
Confidence 4689999999999999999999999999999986 4 39999999999999976 799995 9999999999
Q ss_pred HhcCCCHHHHHHHhcCCCCCCCCCCcccCCCCccccccccCCCCCCCCcceeeeeccccCCcccccceeehHHHHhHHhc
Q 001713 305 NVVRKPLRQIFSEFSGGTRPVDEVGLYTGTGDVKYHLGTSYDRPTRGGKRIHLSLVANPSHLEAVDPVVIGKTRAKQYYS 384 (1021)
Q Consensus 305 ~v~g~~~~~if~Ef~G~~~~~~~G~~~gGsgDvkyHlg~s~~~~~~~g~~i~l~l~~npShlg~~~PvA~G~A~A~q~~~ 384 (1021)
+ |.++.++|+|++|+.+|. ++ +.+. ++++..|++|.++|.|+|+|+|.|+.+
T Consensus 91 ~--G~~~~~~~ae~~g~~~g~--------------~~--~~~~----------~~~g~~~~vG~~lp~AiGaAla~k~~~ 142 (341)
T TIGR03181 91 R--GVPLVEILLYWRGDERGS--------------WD--PEGV----------NILPPNIPIGTQYLHAAGVAYALKLRG 142 (341)
T ss_pred c--CCCHHHHHHHhcCcCcCC--------------CC--chhc----------CccCCCchHhcchhHHHhHHHHHHhhC
Confidence 9 999999999999986432 11 2222 334445789999999999999999877
Q ss_pred CCCCCCCcEEEEEeCccccCCccHHHHHHHhc---CCCCCCcccEEEEEEcCCcccccCCCCCcccccHHHHHhhcCccE
Q 001713 385 NDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS---ALPNYSIGGTIHIVVNNQVAFTTDPMSGRSSQYCTDVAKALDAPI 461 (1021)
Q Consensus 385 ~d~~~~~~v~v~~~GDgA~sGqG~v~EalnlA---~LP~y~~GGvI~Vv~NNq~g~tT~~~~~rs~~~~sd~Aka~g~p~ 461 (1021)
.+ .++||++||||++ +|.++|+||+| +|| +||||+||+|+++|+.......++++++|++||+|+
T Consensus 143 ~~-----~~vv~~~GDGa~~-~g~~~EaL~tA~~~~LP------vi~Vv~NN~~~~~~~~~~~~~~~d~~~~a~a~G~~~ 210 (341)
T TIGR03181 143 ED-----NVAVTYFGDGGTS-EGDFYEALNFAGVFKAP------VVFFVQNNQWAISVPRSKQTAAPTLAQKAIAYGIPG 210 (341)
T ss_pred CC-----CEEEEEecCCccc-cChHHHHHHHHhccCCC------EEEEEECCCCccccchhhhhCCcCHHHHHhhCCCCE
Confidence 65 8999999999998 99999999999 999 999999999999997665555678999999999999
Q ss_pred EEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeeeccCCCCCCCCC-CCCCHHHHHHHHhCCCHHHHHHHHHHHccCCC
Q 001713 462 FHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYRRFGHNEIDEP-SFTQPKMYKIIRSHPSSLEIYQNKLLECQHVT 540 (1021)
Q Consensus 462 ~~VdG~D~eAV~~a~~~A~e~rr~~~gPvlIe~vtYR~~GHne~Ddp-~ytqp~ey~~i~~~~dpi~~y~~~Li~~Gi~t 540 (1021)
++|||+|+++|+++++.|+++++++++|+|||++|||++|||++|+| .||++++.+.|+ ++||+.+|+++|+++|++|
T Consensus 211 ~~Vdg~d~~av~~a~~~A~~~a~~~~gP~lIev~t~R~~gH~~~D~~~~YR~~~e~~~~~-~~Dpi~~~~~~L~~~g~~~ 289 (341)
T TIGR03181 211 VQVDGNDVLAVYAVTKEAVERARSGGGPTLIEAVTYRLGPHTTADDPTRYRTKEEEEEWR-KKDPILRLRKYLERKGLWD 289 (341)
T ss_pred EEECCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEeecCCCCCCCCCCccCCCHHHHHHHh-cCCHHHHHHHHHHHCCCCC
Confidence 99999999999999999999999999999999999999999999998 477777777775 6999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHchhcC-CCccchhhhhccCC
Q 001713 541 QEDINKIQEKVNRILSEEFVASKDYV-PNRRDWLSAYWSGF 580 (1021)
Q Consensus 541 ~ee~~~i~~~~~~~l~~a~~~A~~~~-p~~~~~~~~~~~~~ 580 (1021)
++++++|+++++++|++++++|++.| |++.+.+.++|.++
T Consensus 290 ~~e~~~i~~~~~~~v~~a~~~a~~~p~P~~~~~~~~vy~~~ 330 (341)
T TIGR03181 290 EEQEEALEEEAEAEVAEAVAEALALPPPPVDDIFDHVYAEL 330 (341)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHhhcccCC
Confidence 99999999999999999999999988 88889999998753
No 18
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=100.00 E-value=1.4e-51 Score=492.87 Aligned_cols=551 Identities=13% Similarity=0.128 Sum_probs=393.6
Q ss_pred HhhCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccCCccchHHHHHHHHHHHhhCCCCcEEE-cCCccc
Q 001713 221 DKIETPTP-MQYNRQRREVILDRLVWSTQFENFLATKWTTAKRFGLEGGETLIPGMKEMFDRAADLGVESIVI-GMPHRG 298 (1021)
Q Consensus 221 ~~~E~~~~-~~ls~e~~~~i~~~M~~ar~fE~~l~~~~~~~Krfg~eG~Ea~i~gl~~~l~~a~~~g~~D~vi-gm~HRg 298 (1021)
++|.+|.. ..|+.+++.++ -.-++.+.++.- .+ .+|-..+..|+ +-.+++..+.- + -.+|+++ -+.||+
T Consensus 4 ~~~~~p~d~~~l~~~~l~~l-~~~ir~~~~~~~--~~-~~Gh~~~~lg~--vel~~al~~~f--~-~~~D~ii~d~ghr~ 74 (581)
T PRK12315 4 EKINSPADLKKLSLDELEQL-ASEIRTALLEKD--SA-HGGHVGPNLGV--VELTIALHYVF--N-SPKDKIVWDVSHQS 74 (581)
T ss_pred hhcCCHHHHhhCCHHHHHHH-HHHHHHHHHHHH--Hh-cCCCcCcchhH--HHHHHHHHhhc--C-CCCCcEEEecCCch
Confidence 44555432 46775555443 333444443332 21 13333445787 33333333330 0 1256665 349999
Q ss_pred HHHHHHHhcCCCHHHHHHHhcCCCCCCCCCCcccCCCCccccccccCCCCCCCCcceeeeeccccCCcccccceeehHHH
Q 001713 299 RLNVLGNVVRKPLRQIFSEFSGGTRPVDEVGLYTGTGDVKYHLGTSYDRPTRGGKRIHLSLVANPSHLEAVDPVVIGKTR 378 (1021)
Q Consensus 299 rln~La~v~g~~~~~if~Ef~G~~~~~~~G~~~gGsgDvkyHlg~s~~~~~~~g~~i~l~l~~npShlg~~~PvA~G~A~ 378 (1021)
+++.|+. |.++..++.|.+|+.+|.+++ + +| .|-. ...+|+++++|+|+|+|+
T Consensus 75 ~~~~l~~--G~~~~~~~~~~~g~~~G~~~~--~-~s----~~~~------------------~~~g~~~~~ls~A~G~A~ 127 (581)
T PRK12315 75 YPHKMLT--GRKEAFLDPDHYDDVTGYTNP--E-ES----EHDF------------------FTVGHTSTSIALATGLAK 127 (581)
T ss_pred HHHHHHc--CCccchhhHHHcCCCCCCCCC--C-CC----CCCC------------------cCCCcHHHHHHHHHHHHH
Confidence 9999998 999999999999999988763 1 22 2211 122779999999999999
Q ss_pred HhHHhcCCCCCCCcEEEEEeCccccCCccHHHHHHHhc---CCCCCCcccEEEEEEcCCcccccCCCC---------Ccc
Q 001713 379 AKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS---ALPNYSIGGTIHIVVNNQVAFTTDPMS---------GRS 446 (1021)
Q Consensus 379 A~q~~~~d~~~~~~v~v~~~GDgA~sGqG~v~EalnlA---~LP~y~~GGvI~Vv~NNq~g~tT~~~~---------~rs 446 (1021)
|.++++.+ ..++|++|||+++ +|.+||+||+| ++| +|+||+||+++++++... ...
T Consensus 128 A~k~~~~~-----~~vv~~iGDG~~~-eG~~~EAln~A~~~k~~------li~Ii~dN~~si~~~~~~~~~~l~~~~~~~ 195 (581)
T PRK12315 128 ARDLKGEK-----GNIIAVIGDGSLS-GGLALEGLNNAAELKSN------LIIIVNDNQMSIAENHGGLYKNLKELRDTN 195 (581)
T ss_pred HHHhcCCC-----CeEEEEECchhhh-cchHHHHHHHHHhhCCC------EEEEEECCCCcCCCCCchhhhhhhhhhhcc
Confidence 99987765 7899999999999 99999999999 889 999999999999987631 122
Q ss_pred cccHHHHHhhcCccEEEE-eCCCHHHHHHHHHHHHHHHHccCCCEEEEEeeeccCCCCCCCCCCCCCHHHHHHHHhCCCH
Q 001713 447 SQYCTDVAKALDAPIFHV-NGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYRRFGHNEIDEPSFTQPKMYKIIRSHPSS 525 (1021)
Q Consensus 447 ~~~~sd~Aka~g~p~~~V-dG~D~eAV~~a~~~A~e~rr~~~gPvlIe~vtYR~~GHne~Ddp~ytqp~ey~~i~~~~dp 525 (1021)
..+..+++++||++++.| ||+|++++++|++.|. +.++|++|++.|||..|..... +.-..|. ..+|
T Consensus 196 ~~~~~~~~~a~G~~~~~v~DG~D~~~l~~a~~~a~----~~~gP~~i~~~T~kG~G~~~~~-------~~~~~~h-~~~~ 263 (581)
T PRK12315 196 GQSENNLFKAMGLDYRYVEDGNDIESLIEAFKEVK----DIDHPIVLHIHTLKGKGYQPAE-------ENKEAFH-WHMP 263 (581)
T ss_pred cccHHHHHHhcCCeEEEeeCCCCHHHHHHHHHHHH----hCCCCEEEEEEeecCCCCChhh-------cCHHhcC-CCCC
Confidence 345678999999999999 9999999999998864 5689999999999999943100 0001111 0110
Q ss_pred HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHchhcCCCccchhhhhccCCCCcccccccCCCCCChHHHHHHHHh
Q 001713 526 LEIYQNKLLECQHVTQEDINKIQEKVNRILSEEFVASKDYVPNRRDWLSAYWSGFKSPEQLSRIRNTGVKPEILKNVGKA 605 (1021)
Q Consensus 526 i~~y~~~Li~~Gi~t~ee~~~i~~~~~~~l~~a~~~A~~~~p~~~~~~~~~~~~~~~~~~~~~~~~t~v~~~~l~~i~~~ 605 (1021)
+. ..|+-.
T Consensus 264 ---------------------------------------------------f~-----------~~~~~~---------- 271 (581)
T PRK12315 264 ---------------------------------------------------FD-----------LETGQS---------- 271 (581)
T ss_pred ---------------------------------------------------CC-----------cccCcc----------
Confidence 00 000000
Q ss_pred hhcCCCCCCcccchHHHHHHHHHHhhcCCCcCHHHHHHHHHHHHHhcCCcEEEEcccCCCcccccccceeccCCcCceec
Q 001713 606 ITTLPENFKPHRGVKKVYELRAQMIETGEGIDWALGEALAFATLLVEGNHVRLSGQDVERGTFSHRHSVLHDQETGEQYC 685 (1021)
Q Consensus 606 ~~~~P~~f~~h~~l~~~l~~R~~~~~~~~~idw~~AE~lA~~~ll~~~~~Vrl~GeDv~rGtF~~RHavl~dq~t~~~y~ 685 (1021)
.++. ....|..+-..++..++.++++|.+.++|... .++.
T Consensus 272 ---~~~~---------------------~~~~~~~~~~~~l~~~~~~d~~i~~i~~~~~~-~~~~--------------- 311 (581)
T PRK12315 272 ---KVPA---------------------SGESYSSVTLDYLLKKIKEGKPVVAINAAIPG-VFGL--------------- 311 (581)
T ss_pred ---cCCC---------------------CCcCHHHHHHHHHHHHhccCCCEEEEeCcccc-ccCc---------------
Confidence 0000 01123334455677888999999999999843 3333
Q ss_pred cCCCcccccCCcccEEecCccchHHHHHHHHhhccCCCCcceEehhhhhhhHhhHHHHHHHHHhhhhhhhcCccceEEEe
Q 001713 686 PLDHVMMNQDAEMFTVSNSSLSEFGVLGFELGYSMENPNSLVMWEAQFGDFANGAQVIFDQFVNSGESKWLRQSGLVVML 765 (1021)
Q Consensus 686 pL~~L~~~~~~g~~rV~nspLSE~~vlGfe~G~a~~g~~~lviwEaqFgDF~n~Aq~~iDqfi~s~~~kw~~~~~lV~~l 765 (1021)
+.+. ++| +.|++|++|+|++++|++.|+|+.|.+|++ ++|++|+..| +||++... ..++.|++++.
T Consensus 312 --~~f~--~~f-P~R~id~GIaEq~~v~~AaGlA~~G~~Pvv---~~fs~Fl~ra---~dQi~~d~---a~~~lpv~~~~ 377 (581)
T PRK12315 312 --KEFR--KKY-PDQYVDVGIAEQESVAFASGIAANGARPVI---FVNSTFLQRA---YDQLSHDL---AINNNPAVMIV 377 (581)
T ss_pred --HHHH--Hhc-cccccCCCchHHHHHHHHHHHHHCcCeEEE---EeeHHHHHHH---HHHHHHHH---HhcCCCEEEEE
Confidence 5777 677 789999999999999999999999999987 9999999999 88887642 23579999999
Q ss_pred CccC-CCCCcCCcCchhhHhhhccCCCCCcccCCCchhhhcccccCeEEEecCCHHHHHHHHHHHHhcCCCCcEEEEeec
Q 001713 766 PHGY-DGQGPEHSSARLERFLQMSDDNPYVIPEMDSTLRTQIQECNWQIVNVTTPANYFHVLRRQIHREFRKPLVVMSPK 844 (1021)
Q Consensus 766 PhG~-~G~GpeHSs~r~Er~Lql~~e~~~~~~~ipg~~~~~~~~~Nl~Vv~pstpad~fhlLrrqi~~~~~kPliv~~pK 844 (1021)
+|+. .+.||+|++.-...+ +.++|| |+|+.|+++.++.++|+.++.. .+.|++|.+||
T Consensus 378 ~~~g~~~dG~TH~~~~Dia~----------lr~iPn----------l~V~~P~d~~e~~~~l~~a~~~-~~gP~~ir~~r 436 (581)
T PRK12315 378 FGGSISGNDVTHLGIFDIPM----------ISNIPN----------LVYLAPTTKEELIAMLEWALTQ-HEHPVAIRVPE 436 (581)
T ss_pred ECCcccCCCccccccHHHHH----------HhcCCC----------CEEEecCCHHHHHHHHHHHHhC-CCCcEEEEEcC
Confidence 9944 668999999954565 568985 9999999999999999999863 25899999999
Q ss_pred cccCCccccCCcccccccCCCCCCCCCCCcceEeecCccccccCCCCCeEEEEeechhHHHHHHHHHHc--C-CCcEEEE
Q 001713 845 NLLRHKECKSNLSEFDDVQGHPGFDKQGTRFKRLIKDQNEHSDLEEGIRRLILCSGKVYYELYEERKKH--S-ASDIAIC 921 (1021)
Q Consensus 845 ~Llr~~~~~s~~~e~~~~~~~~~~~~~~~~f~~vi~~~~~~~~~~~g~~~~Iv~~Gk~~~~l~~a~~~~--~-~~~v~ii 921 (1021)
..+...... + +++. . +++.+.++|.|++|||+|.+++.+++++++| + +++++||
T Consensus 437 ~~~~~~~~~-~-~~~~----------------~-----~k~~v~~~g~dvtiia~G~~v~~Al~Aa~~L~~~~gi~~~Vi 493 (581)
T PRK12315 437 HGVESGPTV-D-TDYS----------------T-----LKYEVTKAGEKVAILALGDFYELGEKVAKKLKEELGIDATLI 493 (581)
T ss_pred CccCCCCCC-c-cCcc----------------c-----ceEEEEecCCCEEEEEEchHHHHHHHHHHHHhhhcCCCEEEE
Confidence 887542110 0 1121 1 1334567889999999999999999999987 3 7899999
Q ss_pred EecccCCCCHHHHHHHHHcCCCceEEEEecCCcccchHhhHHHHHHHHHHhhccCCCCcEEEEcCCCCcCCCcccH----
Q 001713 922 RVEQLCPFPYDLVQRELKRYPNAEVVWSQEEPMNMGAYTYIAPRLCTAMKAVDRGTMEDIKYVGRAPSAASATGFY---- 997 (1021)
Q Consensus 922 ~le~L~Pfp~~~i~~~l~k~~~~~~vwvqEe~~n~G~~~~v~~~i~~~~~~l~~~~~~~~~~vgr~~~~~pa~g~~---- 997 (1021)
++++|+|||.+++....+++..+ |+++|....+|+++.|...+.+. ..+++.+|=|+.-.+ .|..
T Consensus 494 d~~~ikPlD~~~i~~~~~~~~~v--vtvEe~~~~GG~gs~v~~~l~~~--------~~~~~~~gi~d~f~~-~g~~~~l~ 562 (581)
T PRK12315 494 NPKFITGLDEELLEKLKEDHELV--VTLEDGILDGGFGEKIARYYGNS--------DMKVLNYGAKKEFND-RVPVEELY 562 (581)
T ss_pred ecCcCCCCCHHHHHHHHhhCCEE--EEEcCCCcCCCHHHHHHHHHHcC--------CCeEEEecCCCCCCC-CCCHHHHH
Confidence 99999999999986655555443 66777789999999999888653 136888887664332 3433
Q ss_pred HHHHHHHHHHHHHhc
Q 001713 998 QVHVKEQSELMQKAI 1012 (1021)
Q Consensus 998 ~~h~~e~~~i~~~a~ 1012 (1021)
+.+--..+.|++++.
T Consensus 563 ~~~Gl~~~~I~~~i~ 577 (581)
T PRK12315 563 KRNHLTPEQIVEDIL 577 (581)
T ss_pred HHHCcCHHHHHHHHH
Confidence 333334556665543
No 19
>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP).
Probab=100.00 E-value=5.1e-47 Score=456.17 Aligned_cols=450 Identities=17% Similarity=0.209 Sum_probs=342.3
Q ss_pred cccCCcccccceeehHHHHhHHhcCCCCCCCcEEEEEeCccccCCccHHHHHHHhc---CCCCCCcccEEEEEEcCCccc
Q 001713 361 ANPSHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS---ALPNYSIGGTIHIVVNNQVAF 437 (1021)
Q Consensus 361 ~npShlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDgA~sGqG~v~EalnlA---~LP~y~~GGvI~Vv~NNq~g~ 437 (1021)
..++|+|.++++|+|+|+|.++++.+ ..++|++|||+++ +|.+||+||+| +|| .|+||+||++++
T Consensus 108 ~~~G~~g~~ls~a~G~A~a~~~~~~~-----~~v~~~~GDG~~~-eG~~~Ea~~~a~~~~l~------~i~ii~~N~~~i 175 (617)
T TIGR00204 108 FSAGHSSTSISAGLGIAVAAEKKGAD-----RKTVCVIGDGAIT-AGMAFEALNHAGDLKTD------MIVILNDNEMSI 175 (617)
T ss_pred cCCCchHhHHHHHHHHHHHHHhhCCC-----CEEEEEECCcccc-cccHHHHHHHHHhcCCC------EEEEEECCCccc
Confidence 45689999999999999999988765 7999999999999 99999999999 999 999999999999
Q ss_pred ccCCCCCc-------cc-----------------c---c-HHHH--------------HhhcCccEE-EEeCCCHHHHHH
Q 001713 438 TTDPMSGR-------SS-----------------Q---Y-CTDV--------------AKALDAPIF-HVNGDDMEAVAH 474 (1021)
Q Consensus 438 tT~~~~~r-------s~-----------------~---~-~sd~--------------Aka~g~p~~-~VdG~D~eAV~~ 474 (1021)
+++..... .+ + . +.++ .+++|+-++ .|||+|++++..
T Consensus 176 ~~~~~~~~~~l~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~f~~~G~~~~~~vDGhd~~~l~~ 255 (617)
T TIGR00204 176 SENVGALSNHLAQLRSGSLYQSLRDGLKKIFSKLPPIKNYLAKRTEESMKGLVVPGTFFEELGFNYIGPVDGHDLLELIE 255 (617)
T ss_pred CCCchHHHHHHHHhhccchHHHHHHHHHHHHhcCcchhHHHHHHHHHhhhhccCccchHHHcCCcEEcccCCCCHHHHHH
Confidence 98764221 10 0 1 2233 678999999 899999999998
Q ss_pred HHHHHHHHHHccCCCEEEEEeeeccCCCCCCCCCCCCCHHHHHHHHhCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHH
Q 001713 475 VCELAAEWRQTFHSDVVVDLVCYRRFGHNEIDEPSFTQPKMYKIIRSHPSSLEIYQNKLLECQHVTQEDINKIQEKVNRI 554 (1021)
Q Consensus 475 a~~~A~e~rr~~~gPvlIe~vtYR~~GHne~Ddp~ytqp~ey~~i~~~~dpi~~y~~~Li~~Gi~t~ee~~~i~~~~~~~ 554 (1021)
+++.|. ..++|++|++.|.|..|-... .+||..
T Consensus 256 al~~ak----~~~~P~~i~~~T~KGkG~~~~----------------e~~~~~--------------------------- 288 (617)
T TIGR00204 256 TLKNAK----KLKGPVFLHIQTKKGKGYKPA----------------EKDPIG--------------------------- 288 (617)
T ss_pred HHHHHh----cCCCCEEEEEEecCCCCCchh----------------hcChhh---------------------------
Confidence 887554 557899999999999883211 011111
Q ss_pred HHHHHHHchhcCCCccchhhhhccCCCCcccccccCCCCCChHHHHHHHHhhhcCCCCCCcccchHHHHHHHHHHhhcCC
Q 001713 555 LSEEFVASKDYVPNRRDWLSAYWSGFKSPEQLSRIRNTGVKPEILKNVGKAITTLPENFKPHRGVKKVYELRAQMIETGE 634 (1021)
Q Consensus 555 l~~a~~~A~~~~p~~~~~~~~~~~~~~~~~~~~~~~~t~v~~~~l~~i~~~~~~~P~~f~~h~~l~~~l~~R~~~~~~~~ 634 (1021)
|.....++ ..++. .|. ....
T Consensus 289 ----------------------~H~~~~~~-----~~~~~--------------~~~-------------------~~~~ 308 (617)
T TIGR00204 289 ----------------------WHGVGPFD-----LSTGC--------------LPK-------------------SKSA 308 (617)
T ss_pred ----------------------ccCCCCCC-----hhhCC--------------cCC-------------------CCCC
Confidence 10000000 00000 000 0011
Q ss_pred CcCHHHHHHHHHHHHHhcCCcEEEEcccCCCcccccccceeccCCcCceeccCCCcccccCCcccEEecCccchHHHHHH
Q 001713 635 GIDWALGEALAFATLLVEGNHVRLSGQDVERGTFSHRHSVLHDQETGEQYCPLDHVMMNQDAEMFTVSNSSLSEFGVLGF 714 (1021)
Q Consensus 635 ~idw~~AE~lA~~~ll~~~~~Vrl~GeDv~rGtF~~RHavl~dq~t~~~y~pL~~L~~~~~~g~~rV~nspLSE~~vlGf 714 (1021)
..+|..+-..++..+++++++|++...|...|+ + ++++. ++| +.|++|+||+|++++|+
T Consensus 309 ~~~~~~a~~~~L~~~~~~d~~iv~i~ad~~~~~-~-----------------~~~f~--~~f-P~R~~d~GIaEq~~vg~ 367 (617)
T TIGR00204 309 LPSYSKIFSDTLCELAKKDNKIVGITPAMPEGS-G-----------------LDKFS--RKF-PDRYFDVAIAEQHAVTF 367 (617)
T ss_pred CccHHHHHHHHHHHHHhhCcCEEEEECCccCCc-C-----------------hHHHH--HHC-ccccccCCccHHHHHHH
Confidence 134555667778889999999999988875443 1 26788 788 89999999999999999
Q ss_pred HHhhccCCCCcceEehhhhhhhHhhHHHHHHHHHhhhhhhhcCccceEEEeCc-cCCC-CCcCCcCchhh-HhhhccCCC
Q 001713 715 ELGYSMENPNSLVMWEAQFGDFANGAQVIFDQFVNSGESKWLRQSGLVVMLPH-GYDG-QGPEHSSARLE-RFLQMSDDN 791 (1021)
Q Consensus 715 e~G~a~~g~~~lviwEaqFgDF~n~Aq~~iDqfi~s~~~kw~~~~~lV~~lPh-G~~G-~GpeHSs~r~E-r~Lql~~e~ 791 (1021)
+.|+|+.|.+|++ ++ |++|+..| +||++... ..++.|++++.+| |+.| .||+||+. .+ .+
T Consensus 368 AaGlA~~G~~Pvv--~~-~a~Fl~ra---~dQi~~~~---a~~~lpV~i~~~~~G~~g~dG~tH~~~-~dia~------- 430 (617)
T TIGR00204 368 AAGMAIEGYKPFV--AI-YSTFLQRA---YDQVVHDV---CIQKLPVLFAIDRAGIVGADGETHQGA-FDISY------- 430 (617)
T ss_pred HHHHHHCCCEEEE--Ee-cHHHHHHH---HHHHHHHH---HhcCCCEEEEEECCCcCCCCCcccccc-hHHHH-------
Confidence 9999999999988 77 99999999 88876542 2356899999998 6654 59999998 33 44
Q ss_pred CCcccCCCchhhhcccccCeEEEecCCHHHHHHHHHHHHhcCCCCcEEEEeeccccCCccccCCcccccccCCCCCCCCC
Q 001713 792 PYVIPEMDSTLRTQIQECNWQIVNVTTPANYFHVLRRQIHREFRKPLVVMSPKNLLRHKECKSNLSEFDDVQGHPGFDKQ 871 (1021)
Q Consensus 792 ~~~~~~ipg~~~~~~~~~Nl~Vv~pstpad~fhlLrrqi~~~~~kPliv~~pK~Llr~~~~~s~~~e~~~~~~~~~~~~~ 871 (1021)
+.++|| |+|+.|++|.|++++|+.++.. .+.|++|+.||..+..... + .+ .
T Consensus 431 ---lr~iPg----------l~V~~Psd~~e~~~~l~~a~~~-~~~Pv~ir~~r~~~~~~~~--~-~~-~----------- 481 (617)
T TIGR00204 431 ---LRCIPN----------MVIMAPSDENELRQMLYTGYHY-DDGPIAVRYPRGNAVGVEL--T-PE-P----------- 481 (617)
T ss_pred ---HhcCCC----------cEEEeeCCHHHHHHHHHHHHhC-CCCCEEEEEccCCcCCccc--C-Cc-c-----------
Confidence 679996 9999999999999999999974 2489999999877632100 0 00 0
Q ss_pred CCcceEeecCccccccCCCCCeEEEEeechhHHHHHHHHHHc--CCCcEEEEEecccCCCCHHHHHHHHHcCCCceEEEE
Q 001713 872 GTRFKRLIKDQNEHSDLEEGIRRLILCSGKVYYELYEERKKH--SASDIAICRVEQLCPFPYDLVQRELKRYPNAEVVWS 949 (1021)
Q Consensus 872 ~~~f~~vi~~~~~~~~~~~g~~~~Iv~~Gk~~~~l~~a~~~~--~~~~v~ii~le~L~Pfp~~~i~~~l~k~~~~~~vwv 949 (1021)
.. .+.|++.+.++|.|+|||++|.+++.++++++++ ++++++||++++|+|||.++|.++++||+++ |++
T Consensus 482 -~~-----~~~Gk~~vlr~G~dvtIva~G~~v~~al~Aa~~L~~~gi~~~VId~~~lkPlD~e~i~~~~~k~~~v--vtv 553 (617)
T TIGR00204 482 -EK-----LPIGKSEVLRKGEKILILGFGTLVPEALEVAESLNEKGIEATVVDARFVKPLDEELILEIAASHEKL--VTV 553 (617)
T ss_pred -cc-----ccCCceEEEEcCCCEEEEEcCHHHHHHHHHHHHHHhcCCCEEEEecCcCCcCCHHHHHHHHhhcCeE--EEE
Confidence 00 1235556678899999999999999999999876 4789999999999999999999999999988 999
Q ss_pred ecCCcccchHhhHHHHHHHHHHhhccCCCCcEEEEcCCCCcCCCcccHH----HHHHHHHHHHHHh
Q 001713 950 QEEPMNMGAYTYIAPRLCTAMKAVDRGTMEDIKYVGRAPSAASATGFYQ----VHVKEQSELMQKA 1011 (1021)
Q Consensus 950 qEe~~n~G~~~~v~~~i~~~~~~l~~~~~~~~~~vgr~~~~~pa~g~~~----~h~~e~~~i~~~a 1011 (1021)
+|....+|++++|++.+.+.. + ..+++++|-|+...| .|... .+--..+.|++.+
T Consensus 554 EE~~~~GGlGs~v~~~l~~~~--~----~~~v~~ig~~d~~~~-~g~~~~L~~~~Gl~~~~I~~~i 612 (617)
T TIGR00204 554 EENAIMGGAGSAVLEFLMDQN--K----LVPVKRLGIPDFFIP-HGTQEEVLAELGLDTAGMEAKI 612 (617)
T ss_pred ECCCCccChHHHHHHHHHhcC--C----CCCeEEEeCCCcCcC-CCCHHHHHHHHCcCHHHHHHHH
Confidence 999999999999999998852 2 258999999987776 34322 2223445565554
No 20
>KOG1182 consensus Branched chain alpha-keto acid dehydrogenase complex, alpha subunit [Energy production and conversion]
Probab=100.00 E-value=7.7e-49 Score=417.52 Aligned_cols=332 Identities=17% Similarity=0.236 Sum_probs=297.4
Q ss_pred ccccCCHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccc----CCccchHHHHHHHHHHH
Q 001713 207 YMHISDREKCNWLRDKIETPTPMQYNRQRREVILDRLVWSTQFENFLATKWTTAKRFGL----EGGETLIPGMKEMFDRA 282 (1021)
Q Consensus 207 ~~hi~~~~~~~Wl~~~~E~~~~~~ls~e~~~~i~~~M~~ar~fE~~l~~~~~~~Krfg~----eG~Ea~i~gl~~~l~~a 282 (1021)
...+.|.+.+ | |.....+.++.|..++||+.|+....+|+.+...+++| |.|+ .|.|++-+|.+++|+.
T Consensus 64 iYRV~d~~G~--i---i~~sqdp~~~ee~~~kmy~~M~~Ln~MD~IlYesQRQG-RiSFYmT~~GEEa~higSAAAL~p- 136 (432)
T KOG1182|consen 64 IYRVMDADGQ--I---IDKSQDPQLSEEVVLKMYKDMTLLNIMDRILYESQRQG-RISFYMTNFGEEAIHIGSAAALEP- 136 (432)
T ss_pred eEEEecCCCc--c---cCcccCCCcCHHHHHHHHHHHHHHHHHHHHHHHHhhcc-eEEEEEeccchhhhhhhhhhhCCc-
Confidence 3455666554 2 22333578999999999999999999999999888765 4554 9999999999888876
Q ss_pred hhCCCCcEEEcCCcccHHHHHHHhcCCCHHHHHHHhcCCCCCCCCCCcccCCCCccccccccCCCCCCCCcceeeeeccc
Q 001713 283 ADLGVESIVIGMPHRGRLNVLGNVVRKPLRQIFSEFSGGTRPVDEVGLYTGTGDVKYHLGTSYDRPTRGGKRIHLSLVAN 362 (1021)
Q Consensus 283 ~~~g~~D~vigm~HRgrln~La~v~g~~~~~if~Ef~G~~~~~~~G~~~gGsgDvkyHlg~s~~~~~~~g~~i~l~l~~n 362 (1021)
+|+|+| .||.-+.+|.+ |.++++++.+.+|+..+..+ +++|++|+| +.+ ++.+..
T Consensus 137 -----~Dli~g-QYREaGVLlwR--gftle~f~~qCyGn~~d~gk------GrQMPvHyG-s~e----------lnf~ti 191 (432)
T KOG1182|consen 137 -----QDLIYG-QYREAGVLLWR--GFTLEEFMNQCYGNKSDLGK------GRQMPVHYG-SKE----------LNFVTI 191 (432)
T ss_pred -----cccccc-ccccCceEEEc--CccHHHHHHHhcCCcccccc------ccccccccC-ccc----------cceEEe
Confidence 899996 99999999999 99999999999998866533 389999999 555 345666
Q ss_pred cCCcccccceeehHHHHhHHhcCCCCCCCcEEEEEeCccccCCccHHHHHHHhc---CCCCCCcccEEEEEEcCCccccc
Q 001713 363 PSHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS---ALPNYSIGGTIHIVVNNQVAFTT 439 (1021)
Q Consensus 363 pShlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDgA~sGqG~v~EalnlA---~LP~y~~GGvI~Vv~NNq~g~tT 439 (1021)
+|+|..++|.|+|+|+|.|++.++ +.++||+||||+++ +|.+|-++|+| ..| +||+|-||+|+|||
T Consensus 192 ssplatqlpqAvGaaYa~k~~~~n----nac~V~yfGdG~aS-EGD~HA~~NfAAtle~P------vif~CRNNG~AIST 260 (432)
T KOG1182|consen 192 SSPLATQLPQAVGAAYALKMRKKN----NACAVTYFGDGAAS-EGDAHAAFNFAATLECP------VIFFCRNNGWAIST 260 (432)
T ss_pred cchhhhccchhhhhhhhhhhcccC----CeEEEEEecCCccc-ccchhhhhhHHHHhCCC------EEEEEcCCCeeecc
Confidence 799999999999999999987654 58999999999999 99999999999 999 99999999999999
Q ss_pred CCCCCcccccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeeeccCCCCCCCCCC-CCCHHHHHH
Q 001713 440 DPMSGRSSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYRRFGHNEIDEPS-FTQPKMYKI 518 (1021)
Q Consensus 440 ~~~~~rs~~~~sd~Aka~g~p~~~VdG~D~eAV~~a~~~A~e~rr~~~gPvlIe~vtYR~~GHne~Ddp~-ytqp~ey~~ 518 (1021)
|.+++..+.-++-++.+|||..++|||||+.|||.|++.|.+++-+.++|||||+.|||...||++||.+ ||..+|.+-
T Consensus 261 ptseQyr~DGIa~kG~aYGi~sIRVDGnD~lAvYnA~k~ARe~av~e~rPvliEamtYRvGHHSTSDDSt~YRsadEiq~ 340 (432)
T KOG1182|consen 261 PTSEQYRGDGIAVKGPAYGIRSIRVDGNDALAVYNAVKEAREMAVTEQRPVLIEAMTYRVGHHSTSDDSTAYRSADEIQY 340 (432)
T ss_pred ccHHHhcCCceEEeccccceEEEEecCcchHHHHHHHHHHHHHHHhccCchhhhhhhhhhccccCCCccccccchhhhhh
Confidence 9999988888999999999999999999999999999999999999999999999999999999999986 999999999
Q ss_pred HHhCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHchhcC-CCccchhhhhccCCC
Q 001713 519 IRSHPSSLEIYQNKLLECQHVTQEDINKIQEKVNRILSEEFVASKDYV-PNRRDWLSAYWSGFK 581 (1021)
Q Consensus 519 i~~~~dpi~~y~~~Li~~Gi~t~ee~~~i~~~~~~~l~~a~~~A~~~~-p~~~~~~~~~~~~~~ 581 (1021)
|.+.+.|+.+|++++..+|.|+++...+++++++++|-++++.|++.+ |+..++|.++|..++
T Consensus 341 W~~~~~pisrfr~~i~~~GWw~ee~E~~~rk~~rk~vl~a~~~aEk~~K~~~~~lF~dVYd~~P 404 (432)
T KOG1182|consen 341 WNKSRHPISRFRKYIESNGWWSEEDESELRKNIRKKVLEAIAAAEKKEKPNLTELFEDVYDEMP 404 (432)
T ss_pred hhcccCcHHHHHHHHHhcCCcChhhHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHhhhhh
Confidence 999999999999999999999999999999999999999999998755 888899999997754
No 21
>KOG0524 consensus Pyruvate dehydrogenase E1, beta subunit [Energy production and conversion]
Probab=100.00 E-value=9.7e-47 Score=395.54 Aligned_cols=311 Identities=15% Similarity=0.193 Sum_probs=276.8
Q ss_pred CCCcCHHHHHHHHHHHHHhcCCcEEEEcccCCC--cccccccceeccCCcCceeccCCCcccccCCcccEEecCccchHH
Q 001713 633 GEGIDWALGEALAFATLLVEGNHVRLSGQDVER--GTFSHRHSVLHDQETGEQYCPLDHVMMNQDAEMFTVSNSSLSEFG 710 (1021)
Q Consensus 633 ~~~idw~~AE~lA~~~ll~~~~~Vrl~GeDv~r--GtF~~RHavl~dq~t~~~y~pL~~L~~~~~~g~~rV~nspLSE~~ 710 (1021)
+..+.--.|.|.|+.++|.+|++|+++||||+. |.|++ | +||. ++||+.||+||||+|.+
T Consensus 32 ~~~mtvreALn~amdEEm~rD~~VfvmGEeV~qy~Gaykv---------t-------kGL~--~K~G~~RV~DTPItE~g 93 (359)
T KOG0524|consen 32 AKEMTVREALNQAMDEEMDRDPRVFVMGEEVGQYGGAYKV---------T-------KGLL--DKFGDKRVLDTPITEMG 93 (359)
T ss_pred ceeeeHHHHHHHHHHHHhccCCcEEEechhhhhcCCeeeh---------h-------hhHH--HhcCCceeecCcchhcc
Confidence 445677789999999999999999999999995 99999 7 9999 99999999999999999
Q ss_pred HHHHHHhhccCCCCcceEehhhhhhhHhhHHHHHHHHHhhh---hhhhcC--ccceEEEeCccC-CCCCcCCcCchhhHh
Q 001713 711 VLGFELGYSMENPNSLVMWEAQFGDFANGAQVIFDQFVNSG---ESKWLR--QSGLVVMLPHGY-DGQGPEHSSARLERF 784 (1021)
Q Consensus 711 vlGfe~G~a~~g~~~lviwEaqFgDF~n~Aq~~iDqfi~s~---~~kw~~--~~~lV~~lPhG~-~G~GpeHSs~r~Er~ 784 (1021)
+.|.++|+|+.|.||+| |.|--.|+..| |||+|+|. .++.+. .+|+|+|-|.|. .|.|++|||+ ++.|
T Consensus 94 FtG~avGAA~~GLrPi~--efMtfnFsmqA---id~IiNsaakt~YmSgG~~~~piVfRGPnG~~~gv~AqHSQ~-f~~w 167 (359)
T KOG0524|consen 94 FTGIAVGAAMAGLRPIC--EFMTFNFSMQA---IDQIINSAAKTHYMSGGQQPVPIVFRGPNGAAAGVAAQHSQD-FASW 167 (359)
T ss_pred cchhhHhHHHhCcchhh--hhhcchhHHHH---HHHHHHHHHHHhcccCCceeccEEEeCCCCcccchhhhhhhh-hHHH
Confidence 99999999999999988 99999999999 99988763 334432 589999999999 6999999999 7776
Q ss_pred hhccCCCCCcccCCCchhhhcccccCeEEEecCCHHHHHHHHHHHHhcCCCCcEEEEeeccccCCccccCCcccccccCC
Q 001713 785 LQMSDDNPYVIPEMDSTLRTQIQECNWQIVNVTTPANYFHVLRRQIHREFRKPLVVMSPKNLLRHKECKSNLSEFDDVQG 864 (1021)
Q Consensus 785 Lql~~e~~~~~~~ipg~~~~~~~~~Nl~Vv~pstpad~fhlLrrqi~~~~~kPliv~~pK~Llr~~~~~s~~~e~~~~~~ 864 (1021)
+.++|| +|||.|.|+.|+++||+.+|++ .+||||+|+..||..+...+. +.+.
T Consensus 168 ----------y~siPG----------lkvvapysaedakGLlKaAIRd--~NPVV~lEnelLYg~~f~i~~-E~ls---- 220 (359)
T KOG0524|consen 168 ----------YGSIPG----------LKVVAPYSAEDAKGLLKAAIRD--ENPVVFLENELLYGLSFEIPE-EALS---- 220 (359)
T ss_pred ----------hccCCC----------ceEeccCChhhhhhHHHHhccC--CCCeEEEechhhcCCCccCCh-hhcC----
Confidence 779998 9999999999999999999998 999999999999987765433 2333
Q ss_pred CCCCCCCCCcceEeecCccccccCCCCCeEEEEeechhHHHHHHHHHHc--CCCcEEEEEecccCCCCHHHHHHHHHcCC
Q 001713 865 HPGFDKQGTRFKRLIKDQNEHSDLEEGIRRLILCSGKVYYELYEERKKH--SASDIAICRVEQLCPFPYDLVQRELKRYP 942 (1021)
Q Consensus 865 ~~~~~~~~~~f~~vi~~~~~~~~~~~g~~~~Iv~~Gk~~~~l~~a~~~~--~~~~v~ii~le~L~Pfp~~~i~~~l~k~~ 942 (1021)
..|.- +.++|.+.++|.++|||++..+++.+++|++.+ .++++|||+||+|.|||.++|.+|++||.
T Consensus 221 --------~~fv~---p~gkAkier~G~~iTivt~Sr~v~~~leAA~~L~~~Gvs~EVInlrSirP~D~~tI~~Sv~KT~ 289 (359)
T KOG0524|consen 221 --------KDFVL---PLGKAKIEREGTHITIVTYSRMVGHCLEAAETLVAKGVSAEVINLRSIRPFDIETIGASVKKTN 289 (359)
T ss_pred --------cceee---eccceeeeecCCceEEEEechhHHHHHHHHHHHHhcCCCceeEeeeccCcccHHHHHHHHhhhc
Confidence 34543 356788999999999999999999999999987 57999999999999999999999999999
Q ss_pred CceEEEEecCCcccchHhhHHHHHHHH-HHhhccCCCCcEEEEcCCCCcCCCcc-cHHHHHHHHHHHHHHh
Q 001713 943 NAEVVWSQEEPMNMGAYTYIAPRLCTA-MKAVDRGTMEDIKYVGRAPSAASATG-FYQVHVKEQSELMQKA 1011 (1021)
Q Consensus 943 ~~~~vwvqEe~~n~G~~~~v~~~i~~~-~~~l~~~~~~~~~~vgr~~~~~pa~g-~~~~h~~e~~~i~~~a 1011 (1021)
++ |.|+|.+...|.+++|.++|.|. ++.|+ +|+.++.-.+.|.|+++ ++..-.++.+.|+..+
T Consensus 290 ~l--vtVe~~~p~~gigaei~A~i~E~~fdyLd----APv~rvtg~DvP~PYa~~lE~~a~p~~~~iV~Av 354 (359)
T KOG0524|consen 290 RL--VTVEEGWPQFGIGAEICAQIMENAFDYLD----APVQRVTGADVPTPYAKTLEDWAVPQPADIVTAV 354 (359)
T ss_pred eE--EEEeccccccchhHHHHHHHHHHHHhhhc----chhhhhcCCCCCCccchhhHhhcCCCHHHHHHHH
Confidence 99 99999999999999999999885 57886 79999999999999888 8888888888887665
No 22
>KOG0525 consensus Branched chain alpha-keto acid dehydrogenase E1, beta subunit [Energy production and conversion]
Probab=100.00 E-value=1.3e-47 Score=396.62 Aligned_cols=309 Identities=18% Similarity=0.229 Sum_probs=260.8
Q ss_pred CCcCHHHHHHHHHHHHHhcCCcEEEEcccCCC-cccccccceeccCCcCceeccCCCcccccCCcccEEecCccchHHHH
Q 001713 634 EGIDWALGEALAFATLLVEGNHVRLSGQDVER-GTFSHRHSVLHDQETGEQYCPLDHVMMNQDAEMFTVSNSSLSEFGVL 712 (1021)
Q Consensus 634 ~~idw~~AE~lA~~~ll~~~~~Vrl~GeDv~r-GtF~~RHavl~dq~t~~~y~pL~~L~~~~~~g~~rV~nspLSE~~vl 712 (1021)
++++.-.+.+.|+.-.|+.|++-.++||||+- |+|.+ | .+|. ++||+.||+||||+|++|+
T Consensus 39 ~~mnl~qsvn~al~ial~tdp~a~vfgedv~fggvfrc---------t-------~gl~--~kfgk~rvfntplceqgiv 100 (362)
T KOG0525|consen 39 KKMNLYQSVNQALHIALETDPRAVVFGEDVAFGGVFRC---------T-------TGLA--EKFGKDRVFNTPLCEQGIV 100 (362)
T ss_pred ccchHHHHHHHHHHHHhhcCCceEEeccccccceEEEe---------e-------cchH--HHhCccccccCchhhcccc
Confidence 45666778899999999999999999999995 99999 6 7999 9999999999999999999
Q ss_pred HHHHhhccCCCCcceEehhhhhhhHhhHHHHHHHHHhhhhhhhcCc---cceEEEeCccCCCCC-cCCcCchhhHhhhcc
Q 001713 713 GFELGYSMENPNSLVMWEAQFGDFANGAQVIFDQFVNSGESKWLRQ---SGLVVMLPHGYDGQG-PEHSSARLERFLQMS 788 (1021)
Q Consensus 713 Gfe~G~a~~g~~~lviwEaqFgDF~n~Aq~~iDqfi~s~~~kw~~~---~~lV~~lPhG~~G~G-peHSs~r~Er~Lql~ 788 (1021)
||.+|.|..|.+.++ |+||+||...|++||.+-.++-+++.+.+ -+|+++.|.|..|.| -+|||+ .|+|
T Consensus 101 gfgig~aa~g~~aia--eiqfadyifpafdqivneaakfryrsgnqfncg~ltir~p~gavghg~~yhsqs-peaf---- 173 (362)
T KOG0525|consen 101 GFGIGLAAMGATAIA--EIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTIRAPWGAVGHGALYHSQS-PEAF---- 173 (362)
T ss_pred eechhhhhcccceEE--EEeeccccchhHHHHHHHHHhheeccCCccccCceEEeccccccccccccccCC-chhh----
Confidence 999999999999966 99999999999444444444444444432 379999999998765 599999 9998
Q ss_pred CCCCCcccCCCchhhhcccccCeEEEecCCHHHHHHHHHHHHhcCCCCcEEEEeeccccCCccccCCcccccccCCCCCC
Q 001713 789 DDNPYVIPEMDSTLRTQIQECNWQIVNVTTPANYFHVLRRQIHREFRKPLVVMSPKNLLRHKECKSNLSEFDDVQGHPGF 868 (1021)
Q Consensus 789 ~e~~~~~~~ipg~~~~~~~~~Nl~Vv~pstpad~fhlLrrqi~~~~~kPliv~~pK~Llr~~~~~s~~~e~~~~~~~~~~ 868 (1021)
|.|+|| ++||.|.+|-++++||.++|++ ++|+|||+||.|||...+ |.++
T Consensus 174 ------f~h~pg----------ikvviprsp~qakglllscird--pnp~iffepk~lyr~a~e-----dvp~------- 223 (362)
T KOG0525|consen 174 ------FCHVPG----------IKVVIPRSPRQAKGLLLSCIRD--PNPCIFFEPKILYRQAVE-----DVPE------- 223 (362)
T ss_pred ------eecCCC----------ceEEecCCcchhhceeeeeccC--CCceEEechHHHHHHhhh-----hCCC-------
Confidence 889998 9999999999999999999998 999999999999997643 4433
Q ss_pred CCCCCcceEeecCccccccCCCCCeEEEEeechhHHHHHHHHH---HcCCCcEEEEEecccCCCCHHHHHHHHHcCCCce
Q 001713 869 DKQGTRFKRLIKDQNEHSDLEEGIRRLILCSGKVYYELYEERK---KHSASDIAICRVEQLCPFPYDLVQRELKRYPNAE 945 (1021)
Q Consensus 869 ~~~~~~f~~vi~~~~~~~~~~~g~~~~Iv~~Gk~~~~l~~a~~---~~~~~~v~ii~le~L~Pfp~~~i~~~l~k~~~~~ 945 (1021)
+.|.. +.+++.+.++|.|+|+|+||..++.+++++. +..++++|||||++|-|||.|++.+||+||+|+
T Consensus 224 ----~dy~i---plsqaevireg~ditlv~wgtqvh~i~e~a~l~~ek~giscevidlkti~pwd~d~v~~sv~ktgrl- 295 (362)
T KOG0525|consen 224 ----GDYMI---PLSQAEVIREGSDITLVAWGTQVHVIMEQACLAKEKLGISCEVIDLKTIIPWDKDTVEESVQKTGRL- 295 (362)
T ss_pred ----CCccc---cccHHHHhhcCCceEEEEcchhhHHHHHHHHhhHHhcCCceEEEeeecccCccHHHHHHHHHhhceE-
Confidence 34443 3455778899999999999999888877652 234699999999999999999999999999999
Q ss_pred EEEEecCCcccchHhhHHHHHHHHH-HhhccCCCCcEEEEcCCCCcCCCcccHHHHHHHHHHHHHHh
Q 001713 946 VVWSQEEPMNMGAYTYIAPRLCTAM-KAVDRGTMEDIKYVGRAPSAASATGFYQVHVKEQSELMQKA 1011 (1021)
Q Consensus 946 ~vwvqEe~~n~G~~~~v~~~i~~~~-~~l~~~~~~~~~~vgr~~~~~pa~g~~~~h~~e~~~i~~~a 1011 (1021)
++.+|.|..+|++++|++.+++.+ -.|. +|+.+|.--+.|-|-. ++..+.+...++++..
T Consensus 296 -lisheapvtggfgaeiastv~ercfl~le----apisrvcg~dtpfp~v-fepfy~ptk~ki~dai 356 (362)
T KOG0525|consen 296 -LISHEAPVTGGFGAEIASTVQERCFLNLE----APISRVCGLDTPFPHV-FEPFYMPTKNKILDAI 356 (362)
T ss_pred -EEeccCCccCcchHHHHHHHHHHHHhhcc----CchhhhccCCCCCccc-ccccccCcHhHHHHHH
Confidence 999999999999999999999875 4454 6777766667777743 7777888888877653
No 23
>PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=100.00 E-value=1.8e-43 Score=424.13 Aligned_cols=449 Identities=15% Similarity=0.175 Sum_probs=344.6
Q ss_pred cccCCcccccceeehHHHHhHHhcCCCCCCCcEEEEEeCccccCCccHHHHHHHhc---CCCCCCcccEEEEEEcCCccc
Q 001713 361 ANPSHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS---ALPNYSIGGTIHIVVNNQVAF 437 (1021)
Q Consensus 361 ~npShlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDgA~sGqG~v~EalnlA---~LP~y~~GGvI~Vv~NNq~g~ 437 (1021)
...+|+|.++|+|+|+|+|.+++++ .+..++|++|||+++ +|.++|+|++| ++| +|+||.||++++
T Consensus 114 ~~~G~lG~gl~~AvG~A~a~~~~~~----~~~~v~~i~GDG~l~-eG~~~Eal~~A~~~~~n------li~IvdnN~~~i 182 (580)
T PRK05444 114 FGAGHSSTSISAALGMAKARDLKGG----EDRKVVAVIGDGALT-GGMAFEALNNAGDLKSD------LIVILNDNEMSI 182 (580)
T ss_pred ECCChHHHHHHHHHHHHHHHHhhCC----CCCeEEEEEcccccc-cCHHHHHHHHHHhhCCC------EEEEEECCCCcC
Confidence 4568899999999999999988732 136899999999998 99999999999 888 999999999999
Q ss_pred ccCCCCC---cccccHHHHHhhcCccEE-EEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeeeccCCCCCC--CCCCCC
Q 001713 438 TTDPMSG---RSSQYCTDVAKALDAPIF-HVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYRRFGHNEI--DEPSFT 511 (1021)
Q Consensus 438 tT~~~~~---rs~~~~sd~Aka~g~p~~-~VdG~D~eAV~~a~~~A~e~rr~~~gPvlIe~vtYR~~GHne~--Ddp~yt 511 (1021)
+++.... ....+..+++++||++++ .|||+|+++++.|++.|. +.++|++|++.|+|.+|.... |...
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~a~G~~~~~~vdG~d~~~l~~al~~a~----~~~~P~lI~~~T~kg~G~~~~e~~~~~-- 256 (580)
T PRK05444 183 SPNVGALSNYLARLRSSTLFEELGFNYIGPIDGHDLDALIETLKNAK----DLKGPVLLHVVTKKGKGYAPAEADPIK-- 256 (580)
T ss_pred CCcchhhhhhhccccHHHHHHHcCCCeeeeeCCCCHHHHHHHHHHHH----hCCCCEEEEEEecCCcCCChhhcCccc--
Confidence 8876433 123456689999999999 589999999998887654 457999999999999985321 1110
Q ss_pred CHHHHHHHHhCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHchhcCCCccchhhhhccCCCCcccccccCC
Q 001713 512 QPKMYKIIRSHPSSLEIYQNKLLECQHVTQEDINKIQEKVNRILSEEFVASKDYVPNRRDWLSAYWSGFKSPEQLSRIRN 591 (1021)
Q Consensus 512 qp~ey~~i~~~~dpi~~y~~~Li~~Gi~t~ee~~~i~~~~~~~l~~a~~~A~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 591 (1021)
| |..| ..+++
T Consensus 257 -------~--h~~~------------~~~~~------------------------------------------------- 266 (580)
T PRK05444 257 -------Y--HGVG------------KFDPE------------------------------------------------- 266 (580)
T ss_pred -------c--CCCC------------CCCcc-------------------------------------------------
Confidence 1 1000 00000
Q ss_pred CCCChHHHHHHHHhhhcCCCCCCcccchHHHHHHHHHHhhcCCCcCHHHHHHHHHHHHHhcCCcEEEEcccCCCcccccc
Q 001713 592 TGVKPEILKNVGKAITTLPENFKPHRGVKKVYELRAQMIETGEGIDWALGEALAFATLLVEGNHVRLSGQDVERGTFSHR 671 (1021)
Q Consensus 592 t~v~~~~l~~i~~~~~~~P~~f~~h~~l~~~l~~R~~~~~~~~~idw~~AE~lA~~~ll~~~~~Vrl~GeDv~rGtF~~R 671 (1021)
++... .+ ......+|..+-..++..+++++++|.+.+.|...|+ ..
T Consensus 267 ~~~~~------------~~--------------------~~~~~~~~~~~~~~~L~~~~~~~~~vv~~~adl~~~~-~~- 312 (580)
T PRK05444 267 TGEQP------------KS--------------------SKPGKPSYTKVFGETLCELAEKDPKIVAITAAMPEGT-GL- 312 (580)
T ss_pred cCCcc------------cc--------------------CCCCcccHHHHHHHHHHHHHhhCCCEEEEECCcCCCC-CH-
Confidence 00000 00 0011145666777888899999999999999986543 22
Q ss_pred cceeccCCcCceeccCCCcccccCCcccEEecCccchHHHHHHHHhhccCCCCcceEehhhhhhhHhhHHHHHHHHHhhh
Q 001713 672 HSVLHDQETGEQYCPLDHVMMNQDAEMFTVSNSSLSEFGVLGFELGYSMENPNSLVMWEAQFGDFANGAQVIFDQFVNSG 751 (1021)
Q Consensus 672 Havl~dq~t~~~y~pL~~L~~~~~~g~~rV~nspLSE~~vlGfe~G~a~~g~~~lviwEaqFgDF~n~Aq~~iDqfi~s~ 751 (1021)
..+. ++| +.|++|++|+|++++|++.|+|+.|.+|++ +. |.+|+..| +||++...
T Consensus 313 ----------------~~f~--~~~-p~R~i~~GIaE~~mvg~A~GlA~~G~~p~~--~~-f~~F~~ra---~dQi~~~~ 367 (580)
T PRK05444 313 ----------------VKFS--KRF-PDRYFDVGIAEQHAVTFAAGLATEGLKPVV--AI-YSTFLQRA---YDQVIHDV 367 (580)
T ss_pred ----------------HHHH--HHh-hhhccCCChHHHHHHHHHHHHHHCCCeeEE--Ee-eHHHHHHH---HHHHHHHh
Confidence 2466 666 789999999999999999999999999988 77 99999999 77776542
Q ss_pred hhhhcCccceEEEeCc-cCCC-CCcCCcCchhhHhhhccCCCCCcccCCCchhhhcccccCeEEEecCCHHHHHHHHHHH
Q 001713 752 ESKWLRQSGLVVMLPH-GYDG-QGPEHSSARLERFLQMSDDNPYVIPEMDSTLRTQIQECNWQIVNVTTPANYFHVLRRQ 829 (1021)
Q Consensus 752 ~~kw~~~~~lV~~lPh-G~~G-~GpeHSs~r~Er~Lql~~e~~~~~~~ipg~~~~~~~~~Nl~Vv~pstpad~fhlLrrq 829 (1021)
- ..+.|++++.+| |+.| .||+||+.-...+ +.++|| |+|+.|++|.|++.+|+.+
T Consensus 368 a---~~~~pv~~v~~~~G~~g~dG~tH~~~edia~----------lr~iP~----------l~V~~Psd~~e~~~~l~~a 424 (580)
T PRK05444 368 A---LQNLPVTFAIDRAGLVGADGPTHQGAFDLSY----------LRCIPN----------MVIMAPSDENELRQMLYTA 424 (580)
T ss_pred h---hcCCCEEEEEeCCCcCCCCCccccccHHHHH----------HhcCCC----------CEEEeeCCHHHHHHHHHHH
Confidence 1 257999999998 6654 5999999833454 669995 9999999999999999999
Q ss_pred HhcCCCCcEEEEeeccccCCccccCCcccccccCCCCCCCCCCCcceEeecCccccccCCCCCeEEEEeechhHHHHHHH
Q 001713 830 IHREFRKPLVVMSPKNLLRHKECKSNLSEFDDVQGHPGFDKQGTRFKRLIKDQNEHSDLEEGIRRLILCSGKVYYELYEE 909 (1021)
Q Consensus 830 i~~~~~kPliv~~pK~Llr~~~~~s~~~e~~~~~~~~~~~~~~~~f~~vi~~~~~~~~~~~g~~~~Iv~~Gk~~~~l~~a 909 (1021)
+.. .++|++|+.+|.++... .. .+ . ..| +.|++.+.++|.|++|||+|.+++.++++
T Consensus 425 ~~~-~~~P~~ir~~r~~~~~~-~~---~~-~------------~~~-----~~Gk~~vl~~G~dvtIia~G~~v~~al~A 481 (580)
T PRK05444 425 LAY-DDGPIAIRYPRGNGVGV-EL---PE-L------------EPL-----PIGKGEVLREGEDVAILAFGTMLAEALKA 481 (580)
T ss_pred HhC-CCCcEEEEecCCCCCCC-CC---CC-c------------ccc-----cCCceEEEEcCCCEEEEEccHHHHHHHHH
Confidence 963 26899999999886421 10 01 0 011 23445556778999999999999999999
Q ss_pred HHHcCCCcEEEEEecccCCCCHHHHHHHHHcCCCceEEEEecCCcccchHhhHHHHHHHHHHhhccCCCCcEEEEcCCCC
Q 001713 910 RKKHSASDIAICRVEQLCPFPYDLVQRELKRYPNAEVVWSQEEPMNMGAYTYIAPRLCTAMKAVDRGTMEDIKYVGRAPS 989 (1021)
Q Consensus 910 ~~~~~~~~v~ii~le~L~Pfp~~~i~~~l~k~~~~~~vwvqEe~~n~G~~~~v~~~i~~~~~~l~~~~~~~~~~vgr~~~ 989 (1021)
++++. +++||++++|+|||.+.|.++++|++++ |+++|...++|+|++|+..+.+... ..+++++|-++.
T Consensus 482 a~~L~--~~~VId~~~i~p~D~~~i~~~~~~~~~v--v~vEe~~~~gG~g~~va~~l~~~~~------~~~v~~ig~~d~ 551 (580)
T PRK05444 482 AERLA--SATVVDARFVKPLDEELLLELAAKHDLV--VTVEEGAIMGGFGSAVLEFLADHGL------DVPVLNLGLPDE 551 (580)
T ss_pred HHHhC--CCEEEEeCcCCccCHHHHHHHHhcCCeE--EEEECCCCCCCHHHHHHHHHHhhcC------CCCEEEEecCCc
Confidence 99886 9999999999999999999999999887 9999999999999999999977521 258899998776
Q ss_pred cCCCcc----cHHHHHHHHHHHHHHhc
Q 001713 990 AASATG----FYQVHVKEQSELMQKAI 1012 (1021)
Q Consensus 990 ~~pa~g----~~~~h~~e~~~i~~~a~ 1012 (1021)
..+ .| +.+.+....+.|++++.
T Consensus 552 f~~-~g~~~~l~~~~gl~~~~I~~~i~ 577 (580)
T PRK05444 552 FID-HGSREELLAELGLDAEGIARRIL 577 (580)
T ss_pred CCC-CCCHHHHHHHHCcCHHHHHHHHH
Confidence 655 33 34445556677776654
No 24
>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=100.00 E-value=3.3e-41 Score=407.28 Aligned_cols=450 Identities=17% Similarity=0.178 Sum_probs=334.2
Q ss_pred CCcccccceeehHHHHhHHhcCCCCCCCcEEEEEeCccccCCccHHHHHHHhc---CCCCCCcccEEEEEEcCCcccccC
Q 001713 364 SHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS---ALPNYSIGGTIHIVVNNQVAFTTD 440 (1021)
Q Consensus 364 Shlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDgA~sGqG~v~EalnlA---~LP~y~~GGvI~Vv~NNq~g~tT~ 440 (1021)
+|-++.+++|+|+|+|.+....+ ..++|++|||+++ +|.+||+|++| ++| +|+||.||++.++++
T Consensus 119 g~~~gslg~a~G~A~a~~~~~~~-----~~v~~v~GDG~~~-eG~~~Eal~~a~~~~~~------li~I~dnN~~~i~~~ 186 (641)
T PRK12571 119 AHSSTSISAALGFAKARALGQPD-----GDVVAVIGDGSLT-AGMAYEALNNAGAADRR------LIVILNDNEMSIAPP 186 (641)
T ss_pred CCCcChHHHHHHHHHHHHHhCCC-----CeEEEEEeCchhh-cchHHHHHHHHHHhCCC------EEEEEECCCeeecCC
Confidence 34466689999999999987654 7899999999998 99999999999 888 999999999999887
Q ss_pred CC-------CCccc-cc----------------------------------HHHHHhhcCccEE-EEeCCCHHHHHHHHH
Q 001713 441 PM-------SGRSS-QY----------------------------------CTDVAKALDAPIF-HVNGDDMEAVAHVCE 477 (1021)
Q Consensus 441 ~~-------~~rs~-~~----------------------------------~sd~Aka~g~p~~-~VdG~D~eAV~~a~~ 477 (1021)
.. +.+.. +| ..++.++|||.++ .|||+|++++..|++
T Consensus 187 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~a~G~~~~~~vdGhd~~~l~~al~ 266 (641)
T PRK12571 187 VGALAAYLSTLRSSDPFARLRAIAKGVEERLPGPLRDGARRARELVTGMIGGGTLFEELGFTYVGPIDGHDMEALLSVLR 266 (641)
T ss_pred ccHHHHHHHHHhcCcchHHHHHHHHHHHhhcchhHHHHHHHHHHhhhhccchhhHHHHcCCEEECccCCCCHHHHHHHHH
Confidence 64 22222 11 1478999999999 799999999999988
Q ss_pred HHHHHHHccCCCEEEEEeeeccCCCCC--CCCCCCCCHHHHHHHHhCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHH
Q 001713 478 LAAEWRQTFHSDVVVDLVCYRRFGHNE--IDEPSFTQPKMYKIIRSHPSSLEIYQNKLLECQHVTQEDINKIQEKVNRIL 555 (1021)
Q Consensus 478 ~A~e~rr~~~gPvlIe~vtYR~~GHne--~Ddp~ytqp~ey~~i~~~~dpi~~y~~~Li~~Gi~t~ee~~~i~~~~~~~l 555 (1021)
.|.+ ..++|++|.+.|-.-+|-.. .+.+. | |--|.
T Consensus 267 ~ak~---~~~~P~~I~~~T~kGkG~~~~e~~~~~---------~--Hg~~~----------------------------- 303 (641)
T PRK12571 267 AARA---RADGPVLVHVVTEKGRGYAPAEADEDK---------Y--HAVGK----------------------------- 303 (641)
T ss_pred HHHh---CCCCCEEEEEEecCccCcchhhcCCCc---------c--cCCCC-----------------------------
Confidence 7753 14789999999999888642 22111 1 11110
Q ss_pred HHHHHHchhcCCCccchhhhhccCCCCcccccccCCCCCChHHHHHHHHhhhcCCCCCCcccchHHHHHHHHHHhhcCCC
Q 001713 556 SEEFVASKDYVPNRRDWLSAYWSGFKSPEQLSRIRNTGVKPEILKNVGKAITTLPENFKPHRGVKKVYELRAQMIETGEG 635 (1021)
Q Consensus 556 ~~a~~~A~~~~p~~~~~~~~~~~~~~~~~~~~~~~~t~v~~~~l~~i~~~~~~~P~~f~~h~~l~~~l~~R~~~~~~~~~ 635 (1021)
..+.. . . ... .. | ..
T Consensus 304 ---------f~~~~-----~--~-~~~--------~~-----------------~-----------------------~~ 318 (641)
T PRK12571 304 ---------FDVVT-----G--L-QKK--------SA-----------------P-----------------------SA 318 (641)
T ss_pred ---------cCCCC-----C--c-ccC--------CC-----------------c-----------------------cc
Confidence 00000 0 0 000 00 0 00
Q ss_pred cCHHHHHHHHHHHHHhcCCcEEEEcccCCCcccccccceeccCCcCceeccCCCcccccCCcccEEecCccchHHHHHHH
Q 001713 636 IDWALGEALAFATLLVEGNHVRLSGQDVERGTFSHRHSVLHDQETGEQYCPLDHVMMNQDAEMFTVSNSSLSEFGVLGFE 715 (1021)
Q Consensus 636 idw~~AE~lA~~~ll~~~~~Vrl~GeDv~rGtF~~RHavl~dq~t~~~y~pL~~L~~~~~~g~~rV~nspLSE~~vlGfe 715 (1021)
.+|..+-..++..+++++++|.+.+.|...|+ +. +++. ++| +.|++|++|+|++++|++
T Consensus 319 ~~~~~~f~~~L~~la~~d~~iv~isadl~~~~-~~-----------------~~f~--~~~-p~R~id~GIaE~~mvg~A 377 (641)
T PRK12571 319 PSYTSVFGEELTKEAAEDSDIVAITAAMPLGT-GL-----------------DKLQ--KRF-PNRVFDVGIAEQHAVTFA 377 (641)
T ss_pred hhHHHHHHHHHHHHHhhCCCEEEEeCCccCCC-Ch-----------------HHHH--HhC-CCcccccCccHHHHHHHH
Confidence 12333444567778999999999999986654 32 5677 777 789999999999999999
Q ss_pred HhhccCCCCcceEehhhhhhhHhhHHHHHHHHHhhhhhhhcCccceEEEeCc-cCC-CCCcCCcCchhhHhhhccCCCCC
Q 001713 716 LGYSMENPNSLVMWEAQFGDFANGAQVIFDQFVNSGESKWLRQSGLVVMLPH-GYD-GQGPEHSSARLERFLQMSDDNPY 793 (1021)
Q Consensus 716 ~G~a~~g~~~lviwEaqFgDF~n~Aq~~iDqfi~s~~~kw~~~~~lV~~lPh-G~~-G~GpeHSs~r~Er~Lql~~e~~~ 793 (1021)
.|+|+.|.+|++ +. |++|+..| +||++...- .++.|++++..| |+. +.||+||+.-...+
T Consensus 378 aGlA~~G~~P~v--~~-f~~Fl~ra---~dQI~~~~a---~~~lpv~~v~~~~G~~g~dG~THq~~~dia~--------- 439 (641)
T PRK12571 378 AGLAAAGLKPFC--AV-YSTFLQRG---YDQLLHDVA---LQNLPVRFVLDRAGLVGADGATHAGAFDLAF--------- 439 (641)
T ss_pred HHHHHCCCEEEE--Ee-hHHHHHHH---HHHHHHHHh---hcCCCeEEEEECCCcCCCCCccccccHHHHH---------
Confidence 999999999988 76 99999999 888765421 357899999865 765 56999999944465
Q ss_pred cccCCCchhhhcccccCeEEEecCCHHHHHHHHHHHHhcCCCCcEEEEeeccccCCccccCCcccccccCCCCCCCCCCC
Q 001713 794 VIPEMDSTLRTQIQECNWQIVNVTTPANYFHVLRRQIHREFRKPLVVMSPKNLLRHKECKSNLSEFDDVQGHPGFDKQGT 873 (1021)
Q Consensus 794 ~~~~ipg~~~~~~~~~Nl~Vv~pstpad~fhlLrrqi~~~~~kPliv~~pK~Llr~~~~~s~~~e~~~~~~~~~~~~~~~ 873 (1021)
+.++|| |+|+.|+++.+++.+|+.++.. .+.|++|+.||..+... +++. .
T Consensus 440 -lr~iPn----------l~V~~Psd~~e~~~~l~~a~~~-~~~P~~ir~~r~~~~~~-------~~~~-----------~ 489 (641)
T PRK12571 440 -LTNLPN----------MTVMAPRDEAELRHMLRTAAAH-DDGPIAVRFPRGEGVGV-------EIPA-----------E 489 (641)
T ss_pred -HhcCCC----------CEEEeeCCHHHHHHHHHHHHhC-CCCcEEEEEecCcCCcc-------ccCC-----------C
Confidence 669995 9999999999999999999972 27999999998765211 0110 0
Q ss_pred cceEeecCccccccCCCCCeEEEEeechhHHHHHHHHHHc--CCCcEEEEEecccCCCCHHHHHHHHHcCCCceEEEEec
Q 001713 874 RFKRLIKDQNEHSDLEEGIRRLILCSGKVYYELYEERKKH--SASDIAICRVEQLCPFPYDLVQRELKRYPNAEVVWSQE 951 (1021)
Q Consensus 874 ~f~~vi~~~~~~~~~~~g~~~~Iv~~Gk~~~~l~~a~~~~--~~~~v~ii~le~L~Pfp~~~i~~~l~k~~~~~~vwvqE 951 (1021)
... .+.+++.+.++|.|++|||+|.+++.++++++++ ++++++||++++|+|||.+.| .++.|+.++ ++++|
T Consensus 490 ~~~---~~~gk~~vlr~G~ditIva~G~~v~~aleAa~~L~~~Gi~v~VId~~~lkPlD~~~i-~sv~k~~~v--vvveE 563 (641)
T PRK12571 490 GTI---LGIGKGRVPREGPDVAILSVGAHLHECLDAADLLEAEGISVTVADPRFVKPLDEALT-DLLVRHHIV--VIVEE 563 (641)
T ss_pred Ccc---ccCceeEEEecCCCEEEEEecHHHHHHHHHHHHHHhcCCCEEEEEcCcCCCcCHHHH-HHHhhhCCE--EEEEC
Confidence 000 1234455678899999999999999999999876 478999999999999999988 666677776 99999
Q ss_pred CCcccchHhhHHHHHHHHH-HhhccCCCCcEEEEcCCCCcCCCcccHHHHH---HHHHHHHHHhc
Q 001713 952 EPMNMGAYTYIAPRLCTAM-KAVDRGTMEDIKYVGRAPSAASATGFYQVHV---KEQSELMQKAI 1012 (1021)
Q Consensus 952 e~~n~G~~~~v~~~i~~~~-~~l~~~~~~~~~~vgr~~~~~pa~g~~~~h~---~e~~~i~~~a~ 1012 (1021)
....+|+|++|+..+.+.. ..+ ..+++++|-++...+.......+. ...+.|++.+.
T Consensus 564 ~~~~gG~g~~v~~~l~~~~~~~l----~~~v~~ig~~d~f~~~g~~~el~~~~gl~~~~I~~~i~ 624 (641)
T PRK12571 564 QGAMGGFGAHVLHHLADTGLLDG----GLKLRTLGLPDRFIDHASREEMYAEAGLTAPDIAAAVT 624 (641)
T ss_pred CCCCCCHHHHHHHHHHhcCcccc----CCCeEEEecCCcCCCCCCHHHHHHHhCcCHHHHHHHHH
Confidence 9999999999999998752 222 258999999877665322222222 35566665553
No 25
>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase
Probab=100.00 E-value=5.9e-42 Score=409.11 Aligned_cols=421 Identities=15% Similarity=0.165 Sum_probs=316.4
Q ss_pred ccccCCcccccceeehHHHHhHHhcCCCCCCCcEEEEEeCccccCCccHHHHHHHhc--CCCCCCcccEEEEEEcCCc--
Q 001713 360 VANPSHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS--ALPNYSIGGTIHIVVNNQV-- 435 (1021)
Q Consensus 360 ~~npShlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDgA~sGqG~v~EalnlA--~LP~y~~GGvI~Vv~NNq~-- 435 (1021)
....+|+|.++++|+|+|+|+++++.+ .-++|++|||+++ +|.+||+||.| .+.+ +|.|+.+|+.
T Consensus 173 ~~~tGslg~glS~a~GmA~a~~l~g~~-----~~v~~viGDGel~-eG~~wEAl~~a~~~~~n-----livIlddN~~~~ 241 (641)
T PLN02234 173 SFGTGHSSTTLSAGLGMAVGRDLKGMN-----NSVVSVIGDGAMT-AGQAYEAMNNAGYLHSN-----MIVILNDNKQVS 241 (641)
T ss_pred EECCCchHHHHHHHHHHHHHHHhCCCC-----CeEEEEEccchhh-hHHHHHHHHHHhhhCCC-----EEEEEECCCCCc
Confidence 345689999999999999999987665 7799999999999 99999999999 3454 9999999987
Q ss_pred -------ccccCCCCC-------ccc-----ccHHHHHhhcCccEE-EEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEe
Q 001713 436 -------AFTTDPMSG-------RSS-----QYCTDVAKALDAPIF-HVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLV 495 (1021)
Q Consensus 436 -------g~tT~~~~~-------rs~-----~~~sd~Aka~g~p~~-~VdG~D~eAV~~a~~~A~e~rr~~~gPvlIe~v 495 (1021)
|.+.+...- +++ ....++.++||+-++ .|||+|++++..|++.+.+. +.++|++|.+.
T Consensus 242 ~~~~q~~g~~~~v~~l~~~l~~l~~~~~~~~~~~~~~fe~fG~~~~g~vDGHd~~~l~~al~~~k~~--~~~~P~vI~~~ 319 (641)
T PLN02234 242 LPTANLDGPTQPVGALSCALSRLQSNCGMIRETSSTLFEELGFHYVGPVDGHNIDDLVSILETLKST--KTIGPVLIHVV 319 (641)
T ss_pred ccccccCCCCCCcccHHHHHHHhhcccccccCCHHHHHHHcCCEEEeeECCCCHHHHHHHHHHHHhc--CCCCCEEEEEE
Confidence 222211000 000 245789999999999 99999999999999876431 23589999999
Q ss_pred eeccCCCCCCCCCCCCCHHHHHHHHhCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHchhcCCCccchhhh
Q 001713 496 CYRRFGHNEIDEPSFTQPKMYKIIRSHPSSLEIYQNKLLECQHVTQEDINKIQEKVNRILSEEFVASKDYVPNRRDWLSA 575 (1021)
Q Consensus 496 tYR~~GHne~Ddp~ytqp~ey~~i~~~~dpi~~y~~~Li~~Gi~t~ee~~~i~~~~~~~l~~a~~~A~~~~p~~~~~~~~ 575 (1021)
|-+-.|-...... + .
T Consensus 320 T~KGkGv~~~E~~------------------------------------------------------------~-----~ 334 (641)
T PLN02234 320 TEKGRGYPYAERA------------------------------------------------------------D-----D 334 (641)
T ss_pred EecCCCcchhhcC------------------------------------------------------------C-----c
Confidence 9888775422100 0 0
Q ss_pred hccCCCCcccccccCCCCCChHHHHHHHHhhhcCCCCCCcccchHHHHHHHHHHhhcCCCcCHHHHHHHHHHHHHhcCCc
Q 001713 576 YWSGFKSPEQLSRIRNTGVKPEILKNVGKAITTLPENFKPHRGVKKVYELRAQMIETGEGIDWALGEALAFATLLVEGNH 655 (1021)
Q Consensus 576 ~~~~~~~~~~~~~~~~t~v~~~~l~~i~~~~~~~P~~f~~h~~l~~~l~~R~~~~~~~~~idw~~AE~lA~~~ll~~~~~ 655 (1021)
.|......+ ..|+ +.. + .....++|..+-+.|+..++++|++
T Consensus 335 ~~H~~~~~~-----~~~g----------~~~---------------------~--~~~~~~sy~~af~~aL~e~a~~D~~ 376 (641)
T PLN02234 335 KYHGVLKFD-----PETG----------KQF---------------------K--NISKTQSYTSCFVEALIAEAEADKD 376 (641)
T ss_pred ccCCCCCCC-----cccc----------ccc---------------------c--CCCCCCCHHHHHHHHHHHHHHHCcC
Confidence 122111000 0011 000 0 0011256777888889999999999
Q ss_pred EEEEcccCCCcccccccceeccCCcCceeccCCCcccccCCcccEEecCccchHHHHHHHHhhccCCCCcceEehhhhhh
Q 001713 656 VRLSGQDVERGTFSHRHSVLHDQETGEQYCPLDHVMMNQDAEMFTVSNSSLSEFGVLGFELGYSMENPNSLVMWEAQFGD 735 (1021)
Q Consensus 656 Vrl~GeDv~rGtF~~RHavl~dq~t~~~y~pL~~L~~~~~~g~~rV~nspLSE~~vlGfe~G~a~~g~~~lviwEaqFgD 735 (1021)
|++.|+|+..||+- ..+. ++| +.|++|++|+|++++|++.|+|+.|.+|++ ++ |++
T Consensus 377 Iv~l~adm~ggt~~------------------~~f~--~~f-PdR~fdvGIAEq~~Vg~AaGLA~~G~rPvv--~~-fs~ 432 (641)
T PLN02234 377 IVAIHAAMGGGTML------------------NLFE--SRF-PTRCFDVGIAEQHAVTFAAGLACEGLKPFC--TI-YSS 432 (641)
T ss_pred EEEEECCCCCCcch------------------HHHH--HHc-cccccCCCcCHHHHHHHHHHHHHCCCeEEE--Ee-hHH
Confidence 99999999766542 3555 566 899999999999999999999999999998 66 999
Q ss_pred hHhhHHHHHHHHHhhhhhhhcCccceEEEeCc-cCCC-CCcCCcCchhhHhhhccCCCCCcccCCCchhhhcccccCeEE
Q 001713 736 FANGAQVIFDQFVNSGESKWLRQSGLVVMLPH-GYDG-QGPEHSSARLERFLQMSDDNPYVIPEMDSTLRTQIQECNWQI 813 (1021)
Q Consensus 736 F~n~Aq~~iDqfi~s~~~kw~~~~~lV~~lPh-G~~G-~GpeHSs~r~Er~Lql~~e~~~~~~~ipg~~~~~~~~~Nl~V 813 (1021)
|+..| +||++... ..++.|++++..+ |+.| .||+|++.-.-.| +.++|| |+|
T Consensus 433 Fl~RA---~DQI~~dv---a~~~lpV~~v~~~aG~~g~dG~TH~~~~Dia~----------lr~iPn----------l~V 486 (641)
T PLN02234 433 FMQRA---YDQVVHDV---DLQKLPVRFAIDRAGLMGADGPTHCGAFDVTF----------MACLPN----------MIV 486 (641)
T ss_pred HHHHH---HHHHHHHH---hhcCCCEEEEEeCCccCCCCCccccccHHHHH----------HhcCCC----------CEE
Confidence 99999 88887652 3567899999865 7754 7999999933343 458985 999
Q ss_pred EecCCHHHHHHHHHHHHhcCCCCcEEEEeeccccCCccccCCcccccccCCCCCCCCCCCcceEeecCccccccCCCCCe
Q 001713 814 VNVTTPANYFHVLRRQIHREFRKPLVVMSPKNLLRHKECKSNLSEFDDVQGHPGFDKQGTRFKRLIKDQNEHSDLEEGIR 893 (1021)
Q Consensus 814 v~pstpad~fhlLrrqi~~~~~kPliv~~pK~Llr~~~~~s~~~e~~~~~~~~~~~~~~~~f~~vi~~~~~~~~~~~g~~ 893 (1021)
+.|++|++++++|+.++.. .++|++|++||..+.... .+.+. . + . + .+.+++.+.++|.|
T Consensus 487 ~~Psd~~E~~~~l~~a~~~-~~~Pv~ir~~R~~~~~~~--~~~~~-~------------~-~-~--~~iGk~~vlreG~d 546 (641)
T PLN02234 487 MAPSDEAELFNMVATAAAI-DDRPSCFRYHRGNGIGVS--LPPGN-K------------G-V-P--LQIGRGRILRDGER 546 (641)
T ss_pred EeeCCHHHHHHHHHHHHhC-CCCCEEEEeecccccccc--cCCCC-c------------c-c-c--ccCceEEEEEeCCC
Confidence 9999999999999998764 258999999998762110 00000 0 0 0 0 12455567788999
Q ss_pred EEEEeechhHHHHHHHHHHc--CCCcEEEEEecccCCCCHHHHHHHHHcCCCceEEEEecCCcccchHhhHHHHHHHH
Q 001713 894 RLILCSGKVYYELYEERKKH--SASDIAICRVEQLCPFPYDLVQRELKRYPNAEVVWSQEEPMNMGAYTYIAPRLCTA 969 (1021)
Q Consensus 894 ~~Iv~~Gk~~~~l~~a~~~~--~~~~v~ii~le~L~Pfp~~~i~~~l~k~~~~~~vwvqEe~~n~G~~~~v~~~i~~~ 969 (1021)
++||++|.+++.++++++.| ++++++|||+++|+|||.+.| .++.|+.++ |++.||+..+|++++|+..+.+.
T Consensus 547 vtIva~G~~v~~Al~AA~~L~~~GI~v~VId~rsikPlD~~~i-~sl~k~~~~--vVt~Ee~~~GG~Gs~Va~~l~e~ 621 (641)
T PLN02234 547 VALLGYGSAVQRCLEAASMLSERGLKITVADARFCKPLDVALI-RSLAKSHEV--LITVEEGSIGGFGSHVVQFLALD 621 (641)
T ss_pred EEEEEecHHHHHHHHHHHHHHhcCCCEEEEecCCcCCCCHHHH-HHHHHhCCE--EEEECCCCCCcHHHHHHHHHHHc
Confidence 99999999999999999876 479999999999999999986 566777676 77778888899999999999875
No 26
>PLN02582 1-deoxy-D-xylulose-5-phosphate synthase
Probab=100.00 E-value=8.7e-41 Score=402.12 Aligned_cols=444 Identities=15% Similarity=0.160 Sum_probs=323.4
Q ss_pred cccCCcccccceeehHHHHhHHhcCCCCCCCcEEEEEeCccccCCccHHHHHHHhc---CCCCCCcccEEEEEEcCCc-c
Q 001713 361 ANPSHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS---ALPNYSIGGTIHIVVNNQV-A 436 (1021)
Q Consensus 361 ~npShlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDgA~sGqG~v~EalnlA---~LP~y~~GGvI~Vv~NNq~-g 436 (1021)
...+|+|.++++|+|+|+|.++++.+ ..++|++|||+++ +|.+||+||+| ++| +|+||.||+. +
T Consensus 141 ~~~G~~g~~ls~a~G~A~a~~~~~~~-----~~v~~viGDG~~~-~G~~~Ealn~a~~~~~~------li~iv~~N~~~s 208 (677)
T PLN02582 141 FGTGHSSTTISAGLGMAVGRDLKGKK-----NNVVAVIGDGAMT-AGQAYEAMNNAGYLDSD------MIVILNDNKQVS 208 (677)
T ss_pred eccchhhhhHHHHHHHHHHHHhcCCC-----CEEEEEecccccc-hhhHHHHHHHHHhhCcC------EEEEEECCCCcc
Confidence 45689999999999999999987765 7899999999999 99999999999 788 9999999986 4
Q ss_pred cccCCCCC---------------cccc-c--------------------HH----------------HHHhhcCccEE-E
Q 001713 437 FTTDPMSG---------------RSSQ-Y--------------------CT----------------DVAKALDAPIF-H 463 (1021)
Q Consensus 437 ~tT~~~~~---------------rs~~-~--------------------~s----------------d~Aka~g~p~~-~ 463 (1021)
+.|.+.++ ++++ | .. .+.+++|+..+ .
T Consensus 209 ~~~~~~~s~~~~vg~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~fe~~G~~y~g~ 288 (677)
T PLN02582 209 LPTATLDGPAPPVGALSSALSRLQSSRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGP 288 (677)
T ss_pred ccccccCCCCCCccHHHHHHHHHhcchhHHHHHHHHHHHHHhCcHhHHHHHHHHHHHhhhccCccccchHHHcCCeEEee
Confidence 42211110 0000 0 10 23678999965 8
Q ss_pred EeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeeeccCCCCCCCCCCCCCHHHHHHHHhCCCHHHHHHHHHHHccCCCHHH
Q 001713 464 VNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYRRFGHNEIDEPSFTQPKMYKIIRSHPSSLEIYQNKLLECQHVTQED 543 (1021)
Q Consensus 464 VdG~D~eAV~~a~~~A~e~rr~~~gPvlIe~vtYR~~GHne~Ddp~ytqp~ey~~i~~~~dpi~~y~~~Li~~Gi~t~ee 543 (1021)
|||+|++++..+++.|.+. ..++|++|.++|-+-.|-..+. .+|
T Consensus 289 iDGHd~~~L~~al~~~k~~--~~~~P~vihv~T~KGkG~~~ae----------------~~~------------------ 332 (677)
T PLN02582 289 VDGHNIDDLVTILREVKST--KTTGPVLIHVVTEKGRGYPYAE----------------RAA------------------ 332 (677)
T ss_pred eCCCCHHHHHHHHHHHHhc--CCCCCEEEEEEecCCCCCChhh----------------cCh------------------
Confidence 9999999999998887642 1268999999998888753220 000
Q ss_pred HHHHHHHHHHHHHHHHHHchhcCCCccchhhhhccCCCCcccccccCCCCCChHHHHHHHHhhhcCCCCCCcccchHHHH
Q 001713 544 INKIQEKVNRILSEEFVASKDYVPNRRDWLSAYWSGFKSPEQLSRIRNTGVKPEILKNVGKAITTLPENFKPHRGVKKVY 623 (1021)
Q Consensus 544 ~~~i~~~~~~~l~~a~~~A~~~~p~~~~~~~~~~~~~~~~~~~~~~~~t~v~~~~l~~i~~~~~~~P~~f~~h~~l~~~l 623 (1021)
..|.+....+ ..|+-. . +.
T Consensus 333 -------------------------------~~~H~~~~f~-----~~~g~~----------~---~~------------ 351 (677)
T PLN02582 333 -------------------------------DKYHGVVKFD-----PATGKQ----------F---KV------------ 351 (677)
T ss_pred -------------------------------hhcCCCCCCC-----cccCCc----------c---CC------------
Confidence 0122111000 011100 0 00
Q ss_pred HHHHHHhhcCCCcCHHHHHHHHHHHHHhcCCcEEEEcccCCCcccccccceeccCCcCceeccCCCcccccCCcccEEec
Q 001713 624 ELRAQMIETGEGIDWALGEALAFATLLVEGNHVRLSGQDVERGTFSHRHSVLHDQETGEQYCPLDHVMMNQDAEMFTVSN 703 (1021)
Q Consensus 624 ~~R~~~~~~~~~idw~~AE~lA~~~ll~~~~~Vrl~GeDv~rGtF~~RHavl~dq~t~~~y~pL~~L~~~~~~g~~rV~n 703 (1021)
.....+|.++-..|+..++++|++|++.++|.. |.|+. ..+. ++| +.|++|
T Consensus 352 --------~~~~~~~s~a~~~aL~~~a~~d~~vv~ita~m~-g~~gl-----------------~~f~--~~f-P~R~fd 402 (677)
T PLN02582 352 --------KAKTQSYTTYFAEALIAEAEVDKDVVAIHAAMG-GGTGL-----------------NLFA--RRF-PTRCFD 402 (677)
T ss_pred --------CCCCcCHHHHHHHHHHHHHccCCCEEEEeCCCC-Cccch-----------------HHHH--HHc-Cccccc
Confidence 001246888888899999999999999999974 44554 4677 777 899999
Q ss_pred CccchHHHHHHHHhhccCCCCcceEehhhhhhhHhhHHHHHHHHHhhhhhhhcCccceEEEeCc-cCCC-CCcCCcCchh
Q 001713 704 SSLSEFGVLGFELGYSMENPNSLVMWEAQFGDFANGAQVIFDQFVNSGESKWLRQSGLVVMLPH-GYDG-QGPEHSSARL 781 (1021)
Q Consensus 704 spLSE~~vlGfe~G~a~~g~~~lviwEaqFgDF~n~Aq~~iDqfi~s~~~kw~~~~~lV~~lPh-G~~G-~GpeHSs~r~ 781 (1021)
++|+|++++|++.|+|+.|.+|++ ++ |++|++.| +||++... ..++.|+|++++| |+.| .||+|++.-.
T Consensus 403 vGIAEq~~vg~AaGLA~~G~kPvv--~~-fs~Fl~RA---~DQI~~dv---al~~lpVv~v~~~aG~vg~dG~TH~~~~D 473 (677)
T PLN02582 403 VGIAEQHAVTFAAGLACEGLKPFC--AI-YSSFLQRG---YDQVVHDV---DLQKLPVRFAMDRAGLVGADGPTHCGAFD 473 (677)
T ss_pred cCcCHHHHHHHHHHHHHCCCeEEE--Ee-cHHHHHHH---HHHHHHHH---HhcCCCEEEEEECCCcccCCCCcccccHH
Confidence 999999999999999999999988 65 99999999 88887652 3567999999998 6654 6999999933
Q ss_pred hHhhhccCCCCCcccCCCchhhhcccccCeEEEecCCHHHHHHHHHHHHhcCCCCcEEEEeeccccCCccccCCcccccc
Q 001713 782 ERFLQMSDDNPYVIPEMDSTLRTQIQECNWQIVNVTTPANYFHVLRRQIHREFRKPLVVMSPKNLLRHKECKSNLSEFDD 861 (1021)
Q Consensus 782 Er~Lql~~e~~~~~~~ipg~~~~~~~~~Nl~Vv~pstpad~fhlLrrqi~~~~~kPliv~~pK~Llr~~~~~s~~~e~~~ 861 (1021)
-.| +.++|| |+|++|+++.+++++|+.++.. .+.|++|.+||... .+. +..+
T Consensus 474 ia~----------lr~iPn----------l~V~~Psd~~E~~~~l~~al~~-~~gPv~IR~pr~~~-~~~------~~~~ 525 (677)
T PLN02582 474 VTY----------MACLPN----------MVVMAPSDEAELFHMVATAAAI-DDRPSCFRYPRGNG-IGV------QLPP 525 (677)
T ss_pred HHH----------HhcCCC----------CEEEeeCCHHHHHHHHHHHHhC-CCCCEEEEEecCCC-CCc------ccCC
Confidence 333 568985 9999999999999999999964 25899999998752 110 0110
Q ss_pred cCCCCCCCCCCCcceEeecCccccccCCCCCeEEEEeechhHHHHHHHHHHc--CCCcEEEEEecccCCCCHHHHHHHHH
Q 001713 862 VQGHPGFDKQGTRFKRLIKDQNEHSDLEEGIRRLILCSGKVYYELYEERKKH--SASDIAICRVEQLCPFPYDLVQRELK 939 (1021)
Q Consensus 862 ~~~~~~~~~~~~~f~~vi~~~~~~~~~~~g~~~~Iv~~Gk~~~~l~~a~~~~--~~~~v~ii~le~L~Pfp~~~i~~~l~ 939 (1021)
++ ... + .+.+++.+.++|.|++|||+|.+++.++++++.+ .+++++||++++|+|||.+.|.+ +.
T Consensus 526 ---~~------~~~-~--~~iGk~~vlr~G~dvtIva~G~~v~~Al~Aa~~L~~~GI~~~VId~~~lkPlD~~~i~~-~~ 592 (677)
T PLN02582 526 ---NN------KGI-P--IEVGKGRILLEGERVALLGYGTAVQSCLAAASLLERHGLSATVADARFCKPLDRALIRS-LA 592 (677)
T ss_pred ---cc------ccc-c--cccCceEEEEeCCCEEEEeecHHHHHHHHHHHHHHhcCCCEEEEEcCcCCCCCHHHHHH-Hh
Confidence 00 000 0 1234455678899999999999999999999876 47899999999999999999955 45
Q ss_pred cCCCceEEEEecCCcccchHhhHHHHHHHHHHhhccCCCCcEEEEcCCCCcCCCcccHH
Q 001713 940 RYPNAEVVWSQEEPMNMGAYTYIAPRLCTAMKAVDRGTMEDIKYVGRAPSAASATGFYQ 998 (1021)
Q Consensus 940 k~~~~~~vwvqEe~~n~G~~~~v~~~i~~~~~~l~~~~~~~~~~vgr~~~~~pa~g~~~ 998 (1021)
|+.++ |++.||...+|+++.|+..+.+.-. .. ...+++.+|-|+.-.+ .|...
T Consensus 593 k~~~~--vVtvEe~~~GG~Gs~va~~l~~~~~-~~--~~~~v~~~Gi~d~F~~-~G~~~ 645 (677)
T PLN02582 593 KSHEV--LITVEEGSIGGFGSHVAQFMALDGL-LD--GKLKWRPLVLPDRYID-HGAPA 645 (677)
T ss_pred hhCCE--EEEECCCCCCcHHHHHHHHHHhcCC-cc--CCceeEEecCCCcccC-cCCHH
Confidence 55555 6666777779999999999877410 00 0136788888876554 55433
No 27
>PRK05899 transketolase; Reviewed
Probab=100.00 E-value=3.4e-39 Score=390.34 Aligned_cols=438 Identities=14% Similarity=0.150 Sum_probs=298.5
Q ss_pred cccCCcccccceeehHHHHhHHhcCCC-----CCCCcEEEEEeCccccCCccHHHHHHHhc---CCCCCCcccEEEEEEc
Q 001713 361 ANPSHLEAVDPVVIGKTRAKQYYSNDM-----DRTKNMAVLIHGDGSFAGQGVVYETLHLS---ALPNYSIGGTIHIVVN 432 (1021)
Q Consensus 361 ~npShlg~~~PvA~G~A~A~q~~~~d~-----~~~~~v~v~~~GDgA~sGqG~v~EalnlA---~LP~y~~GGvI~Vv~N 432 (1021)
+..+++|.++|.|+|+|+|.++.+... ...+..++|++|||++. +|.+||+|+.| +||+ +|+||.|
T Consensus 115 ~~~G~lG~gl~~AiG~Ala~~~~~~~~~~~~~~~~~~~v~~v~GDG~~~-~g~~~Eal~~A~~~~L~~-----li~v~dn 188 (624)
T PRK05899 115 TTTGPLGQGLANAVGMALAEKYLAALFNRPGLDIVDHYTYVLCGDGDLM-EGISHEACSLAGHLKLGN-----LIVIYDD 188 (624)
T ss_pred eCCcchhhhHHHHHHHHHHHHHhhhhcCCccccCcCCeEEEEECcchhh-chHHHHHHHHHHHhCCCC-----EEEEEEC
Confidence 346889999999999999998765410 01137899999999998 99999999999 9997 9999999
Q ss_pred CCcccccCCCCCcccccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeeeccCCCCCCCCC-CCC
Q 001713 433 NQVAFTTDPMSGRSSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYRRFGHNEIDEP-SFT 511 (1021)
Q Consensus 433 Nq~g~tT~~~~~rs~~~~sd~Aka~g~p~~~VdG~D~eAV~~a~~~A~e~rr~~~gPvlIe~vtYR~~GHne~Ddp-~yt 511 (1021)
|+++++++.... ...++.+++++||++++.|||+|++++..|.+.|.+ .++|++|++.|+|.+||...+++ .|.
T Consensus 189 N~~~~~~~~~~~-~~~~~~~~~~a~G~~~~~VdG~d~~~l~~al~~a~~----~~~P~vI~v~t~kg~g~~~~e~~~~~H 263 (624)
T PRK05899 189 NRISIDGPTEGW-FTEDVKKRFEAYGWHVIEVDGHDVEAIDAAIEEAKA----STKPTLIIAKTIIGKGAPNKEGTHKVH 263 (624)
T ss_pred CCCccccccccc-ccccHHHHhccCCCeEEEECCCCHHHHHHHHHHHHh----cCCCEEEEEEeEeccCCccccCCCccc
Confidence 999999876643 356889999999999999999999999999988874 36899999999999999754433 232
Q ss_pred C----HHHHHHHHhCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHchhcCCCccchhhhhccCCCCccccc
Q 001713 512 Q----PKMYKIIRSHPSSLEIYQNKLLECQHVTQEDINKIQEKVNRILSEEFVASKDYVPNRRDWLSAYWSGFKSPEQLS 587 (1021)
Q Consensus 512 q----p~ey~~i~~~~dpi~~y~~~Li~~Gi~t~ee~~~i~~~~~~~l~~a~~~A~~~~p~~~~~~~~~~~~~~~~~~~~ 587 (1021)
. +++++...+ +| + ++. +..++.++ +.+.++.+.+.+.. ....|..
T Consensus 264 ~~~~~~~~~~~~~~----------~l---~-~~~-~~~~~~~~----~~~~~~~~~~~~~~----~~~~~~~-------- 312 (624)
T PRK05899 264 GAPLGAEEIAAAKK----------EL---G-WDY-EPFEVPEE----VYAHWRKAKERGAK----AEAEWNE-------- 312 (624)
T ss_pred CCCCCHHHHHHHHH----------Hc---C-CCc-ccccCChH----HHHHHHHhhhcCch----hHHHHHH--------
Confidence 1 222222211 11 1 100 00011111 11111111100000 0001100
Q ss_pred ccCCCCCChHHHHHHHHhhhcCCCCCCcccchHHHHHHHHHHhhcCCCcCHHHHHHHHHHHHHhcCCcEEEEcccCCCcc
Q 001713 588 RIRNTGVKPEILKNVGKAITTLPENFKPHRGVKKVYELRAQMIETGEGIDWALGEALAFATLLVEGNHVRLSGQDVERGT 667 (1021)
Q Consensus 588 ~~~~t~v~~~~l~~i~~~~~~~P~~f~~h~~l~~~l~~R~~~~~~~~~idw~~AE~lA~~~ll~~~~~Vrl~GeDv~rGt 667 (1021)
. + . +..+....+-..++..+++++++|++.++|+..|+
T Consensus 313 -----------------~-------~-----------------~-~~~~~~~~a~~~~l~~l~~~~~~v~vl~~D~~~~~ 350 (624)
T PRK05899 313 -----------------K-------F-----------------A-GEKVATRKASGKALNALAKALPELVGGSADLAGSN 350 (624)
T ss_pred -----------------h-------h-----------------c-ccchHHHHHHHHHHHHHHhhCCCEEEEeCCCcccc
Confidence 0 0 0 11223334566778899999999999999998777
Q ss_pred cccccceeccCCcCceeccCCCcccccCCc----ccEEecCccchHHHHHHHHhhccCC-CCcceEehhhhhhhHhhHHH
Q 001713 668 FSHRHSVLHDQETGEQYCPLDHVMMNQDAE----MFTVSNSSLSEFGVLGFELGYSMEN-PNSLVMWEAQFGDFANGAQV 742 (1021)
Q Consensus 668 F~~RHavl~dq~t~~~y~pL~~L~~~~~~g----~~rV~nspLSE~~vlGfe~G~a~~g-~~~lviwEaqFgDF~n~Aq~ 742 (1021)
+.. + .+ . ++|| +.|++|++|+|++++|++.|+|+.| .+|++ + .|.-|+..+
T Consensus 351 ~~~---------~-------~~-~--~~f~~~~~p~R~~d~GIaE~~~vg~A~GlA~~G~~~pv~--~-t~~~F~~r~-- 406 (624)
T PRK05899 351 NTK---------I-------KG-S--KDFAPEDYSGRYIHYGVREFAMAAIANGLALHGGFIPFG--G-TFLVFSDYA-- 406 (624)
T ss_pred Ccc---------c-------cc-c--cccCccCCCCCeeeeChhHHHHHHHHHHHHHcCCCeEEE--E-EcHHHHHHH--
Confidence 655 2 11 1 2232 5899999999999999999999999 99988 5 333334445
Q ss_pred HHHHHHhhhhhhhcCccceEEEeCc-cC-C-CCCcCCcCchhhHhhhccCCCCCcccCCCchhhhcccccCeEEEecCCH
Q 001713 743 IFDQFVNSGESKWLRQSGLVVMLPH-GY-D-GQGPEHSSARLERFLQMSDDNPYVIPEMDSTLRTQIQECNWQIVNVTTP 819 (1021)
Q Consensus 743 ~iDqfi~s~~~kw~~~~~lV~~lPh-G~-~-G~GpeHSs~r~Er~Lql~~e~~~~~~~ipg~~~~~~~~~Nl~Vv~pstp 819 (1021)
+||+-.. .....|++++..| |+ . +.||+| ++ +|-. .++.++|| |+|+.|+++
T Consensus 407 -~~qir~~----~~~~~pv~~v~~~~G~~~g~~G~tH-q~-~edi--------a~~r~iP~----------~~V~~P~d~ 461 (624)
T PRK05899 407 -RNAIRLA----ALMKLPVIYVFTHDSIGVGEDGPTH-QP-VEQL--------ASLRAIPN----------LTVIRPADA 461 (624)
T ss_pred -HHHHHHH----HhcCCCEEEEEECCCcCcCCCCCCc-cc-HHHH--------HHHHhCCC----------cEEEeCCCH
Confidence 4554322 2246799998766 76 3 479999 66 7752 13668985 999999999
Q ss_pred HHHHHHHHHHHhcCCCCcEEEEeeccccCCccccCCcccc-cccCCCCCCCCCCCcceEeecCccccccCCCCCeEEEEe
Q 001713 820 ANYFHVLRRQIHREFRKPLVVMSPKNLLRHKECKSNLSEF-DDVQGHPGFDKQGTRFKRLIKDQNEHSDLEEGIRRLILC 898 (1021)
Q Consensus 820 ad~fhlLrrqi~~~~~kPliv~~pK~Llr~~~~~s~~~e~-~~~~~~~~~~~~~~~f~~vi~~~~~~~~~~~g~~~~Iv~ 898 (1021)
.++..+|+.++.. .++|++|+++|.-... +.+- .. ..| +.+. .+.++|.|+||||
T Consensus 462 ~e~~~~l~~a~~~-~~~P~~ir~~r~~~~~------~~~~~~~-----------~~~-----~~G~-~~l~~G~dvtiia 517 (624)
T PRK05899 462 NETAAAWKYALER-KDGPSALVLTRQNLPV------LERTAQE-----------EGV-----AKGG-YVLRDDPDVILIA 517 (624)
T ss_pred HHHHHHHHHHHHc-CCCCEEEEEeCCCCCC------cCCcccc-----------ccc-----cCCc-EEEecCCCEEEEE
Confidence 9999999999974 2689999998643211 1000 00 000 1222 3456789999999
Q ss_pred echhHHHHHHHHHHc--CCCcEEEEEecccCCCCHHH---HHHHHHcCCCc-eEEEEecCCcccch
Q 001713 899 SGKVYYELYEERKKH--SASDIAICRVEQLCPFPYDL---VQRELKRYPNA-EVVWSQEEPMNMGA 958 (1021)
Q Consensus 899 ~Gk~~~~l~~a~~~~--~~~~v~ii~le~L~Pfp~~~---i~~~l~k~~~~-~~vwvqEe~~n~G~ 958 (1021)
+|.+++.++++++.+ .+++++||++++|+|||.++ +..-+. ..+ + +++.|++...|+
T Consensus 518 ~G~~v~~al~Aa~~L~~~gi~~~VId~~sikPlD~~e~h~~~~~lg--~~~~~-~v~~e~~~~~g~ 580 (624)
T PRK05899 518 TGSEVHLALEAADELEAEGIKVRVVSMPSTELFDEQDAAYKESVLP--AAVTA-RVAVEAGVADGW 580 (624)
T ss_pred eCHHHHHHHHHHHHHHhcCCcEEEEECCCcchhccCcHHHHhcccc--ccccc-eEEEccCCccch
Confidence 999999999999876 47999999999999999983 433331 112 3 344466655553
No 28
>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase
Probab=100.00 E-value=1.8e-38 Score=379.74 Aligned_cols=421 Identities=13% Similarity=0.096 Sum_probs=316.7
Q ss_pred cCCcccccceeehHHHHhHHhcCCCCCCCcEEEEEeCccccCCccHHHHHHHhc---CCCCCCcccEEEEEEcCCccccc
Q 001713 363 PSHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS---ALPNYSIGGTIHIVVNNQVAFTT 439 (1021)
Q Consensus 363 pShlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDgA~sGqG~v~EalnlA---~LP~y~~GGvI~Vv~NNq~g~tT 439 (1021)
.+|-++.++.|+|+|.|+..++.+ .-+|+++||||+. -|..+|+||-+ +-+ +|.|+.+|+.+|+.
T Consensus 188 ~GHssTSiSaalG~a~ardl~g~~-----~~vvaVIGDGalt-gGma~EaLN~~g~~~~~------livILNDN~mSi~~ 255 (701)
T PLN02225 188 TGHGCNSISAGLGLAVARDIKGKR-----DRVVAVIDNATIT-AGQAYEAMSNAGYLDSN------MIVILNDSRHSLHP 255 (701)
T ss_pred CChHHHHHHHHHHHHHHHHhcCCC-----CcEEEEEcCcchh-hhhHHHHHhhhhccCCC------EEEEEeCCCCCCCC
Confidence 378999999999999999987765 6789999999999 89999999999 344 99999999999987
Q ss_pred CC--------CC-------Ccccc---------------------cH---------------H-HHHhhcCccEE-EEeC
Q 001713 440 DP--------MS-------GRSSQ---------------------YC---------------T-DVAKALDAPIF-HVNG 466 (1021)
Q Consensus 440 ~~--------~~-------~rs~~---------------------~~---------------s-d~Aka~g~p~~-~VdG 466 (1021)
+. -- -++++ .. . .+.+.+|+..+ -|||
T Consensus 256 n~~~~~~~~vG~ls~~l~~l~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~lFe~lG~~Y~GpvDG 335 (701)
T PLN02225 256 NMEEGSKASISALSSIMSKIQSSKIFRKFRELAKAMTKRIGKGMYEWAAKVDEYARGMVGPTGSTLFEELGLYYIGPVDG 335 (701)
T ss_pred CCCCccCCccchHHHHHHHHhccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccCCCccCcHHHcCCeEECccCC
Confidence 71 00 00000 00 0 23355566554 4799
Q ss_pred CCHHHHHHHHHHHHHHHHccCCCEEEEEeeeccCCCCCCCCCCCCCHHHHHHHHhCCCHHHHHHHHHHHccCCCHHHHHH
Q 001713 467 DDMEAVAHVCELAAEWRQTFHSDVVVDLVCYRRFGHNEIDEPSFTQPKMYKIIRSHPSSLEIYQNKLLECQHVTQEDINK 546 (1021)
Q Consensus 467 ~D~eAV~~a~~~A~e~rr~~~gPvlIe~vtYR~~GHne~Ddp~ytqp~ey~~i~~~~dpi~~y~~~Li~~Gi~t~ee~~~ 546 (1021)
+|++++..+.+.+.+. ...+||||+++|-. |+
T Consensus 336 Hdi~~Li~~l~~~k~~--~~~~PvlvHv~T~K--Gk-------------------------------------------- 367 (701)
T PLN02225 336 HNIEDLVCVLREVSSL--DSMGPVLVHVITEE--NR-------------------------------------------- 367 (701)
T ss_pred CCHHHHHHHHHHHHcC--CCCCCEEEEEEecC--CC--------------------------------------------
Confidence 9999999888887642 22489999999833 21
Q ss_pred HHHHHHHHHHHHHHHchhcCCCccchhhhhccCCCCcccccccCCCCCChHHHHHHHHhhhcCCCCCCcccchHHHHHHH
Q 001713 547 IQEKVNRILSEEFVASKDYVPNRRDWLSAYWSGFKSPEQLSRIRNTGVKPEILKNVGKAITTLPENFKPHRGVKKVYELR 626 (1021)
Q Consensus 547 i~~~~~~~l~~a~~~A~~~~p~~~~~~~~~~~~~~~~~~~~~~~~t~v~~~~l~~i~~~~~~~P~~f~~h~~l~~~l~~R 626 (1021)
.+ .||-...
T Consensus 368 -------------------d~-----------------------~tg~~~~----------------------------- 376 (701)
T PLN02225 368 -------------------DA-----------------------ETGKNIM----------------------------- 376 (701)
T ss_pred -------------------CC-----------------------CCCCcCC-----------------------------
Confidence 00 0110000
Q ss_pred HHHhhcCCCcCHHHHHHHHHHHHHhcCCcEEEEcccCCCcccccccceeccCCcCceeccCCCcccccCCcccEEecCcc
Q 001713 627 AQMIETGEGIDWALGEALAFATLLVEGNHVRLSGQDVERGTFSHRHSVLHDQETGEQYCPLDHVMMNQDAEMFTVSNSSL 706 (1021)
Q Consensus 627 ~~~~~~~~~idw~~AE~lA~~~ll~~~~~Vrl~GeDv~rGtF~~RHavl~dq~t~~~y~pL~~L~~~~~~g~~rV~nspL 706 (1021)
......|..+-+.++..++++|++|++.+.|...||.- ..+. ++| |.|++|++|
T Consensus 377 -----~~~~~s~~~~f~~aL~~la~~D~~Iv~Itadm~~gtgl------------------~~f~--~~f-PdRffDvGI 430 (701)
T PLN02225 377 -----VKDRRTYSDCFVEALVMEAEKDRDIVVVHAGMEMDASL------------------ITFQ--ERF-PDRFFNVGM 430 (701)
T ss_pred -----CCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCccCcccH------------------HHHH--HHc-cccccccCc
Confidence 00013466666778888999999999999998655532 5777 778 899999999
Q ss_pred chHHHHHHHHhhccCCCCcceEehhhhhhhHhhHHHHHHHHHhhhhhhhcCccceEEEeCc-cCCC-CCcCCcCchhhHh
Q 001713 707 SEFGVLGFELGYSMENPNSLVMWEAQFGDFANGAQVIFDQFVNSGESKWLRQSGLVVMLPH-GYDG-QGPEHSSARLERF 784 (1021)
Q Consensus 707 SE~~vlGfe~G~a~~g~~~lviwEaqFgDF~n~Aq~~iDqfi~s~~~kw~~~~~lV~~lPh-G~~G-~GpeHSs~r~Er~ 784 (1021)
+|++++||+.|+|+.|.+|++ +.|++|++.| +||+++.. ..++.|+++.+-+ |+.| .||+|++.....|
T Consensus 431 AEQhaVt~AAGLA~~G~kPvv---~iystFlqRA---yDQI~~Dv---al~~lpV~~vid~aGlvg~DG~TH~g~~Dia~ 501 (701)
T PLN02225 431 AEQHAVTFSAGLSSGGLKPFC---IIPSAFLQRA---YDQVVHDV---DRQRKAVRFVITSAGLVGSDGPVQCGAFDIAF 501 (701)
T ss_pred cHHHHHHHHHHHHHCCCEEEE---EeehhHHHHH---HHHHHHHH---HhhcCCceEEEECCccCCCCCccccccHHHHH
Confidence 999999999999999999988 5778999999 88888752 2234577777666 6665 6999999955566
Q ss_pred hhccCCCCCcccCCCchhhhcccccCeEEEecCCHHHHHHHHHHHHhcCCCCcEEEEeeccccCCccccCCcccccccCC
Q 001713 785 LQMSDDNPYVIPEMDSTLRTQIQECNWQIVNVTTPANYFHVLRRQIHREFRKPLVVMSPKNLLRHKECKSNLSEFDDVQG 864 (1021)
Q Consensus 785 Lql~~e~~~~~~~ipg~~~~~~~~~Nl~Vv~pstpad~fhlLrrqi~~~~~kPliv~~pK~Llr~~~~~s~~~e~~~~~~ 864 (1021)
+.++|| |+|++|+++.++.++|+.++.. .+.|++|.+||..+..-.. +..+
T Consensus 502 ----------lr~IPn----------m~V~aPsD~~El~~mL~~A~~~-~~gPv~IR~pRg~~~~~~~-----~~~~--- 552 (701)
T PLN02225 502 ----------MSSLPN----------MIAMAPADEDELVNMVATAAYV-TDRPVCFRFPRGSIVNMNY-----LVPT--- 552 (701)
T ss_pred ----------HhcCCC----------CEEEeeCCHHHHHHHHHHHHhc-CCCCEEEEecccccCCCCc-----CCCC---
Confidence 568985 9999999999999999998853 3689999999986532100 0000
Q ss_pred CCCCCCCCCcceEeecCccccccCCCCCeEEEEeechhHHHHHHHHHHc--CCCcEEEEEecccCCCCHHHHHHHHHcCC
Q 001713 865 HPGFDKQGTRFKRLIKDQNEHSDLEEGIRRLILCSGKVYYELYEERKKH--SASDIAICRVEQLCPFPYDLVQRELKRYP 942 (1021)
Q Consensus 865 ~~~~~~~~~~f~~vi~~~~~~~~~~~g~~~~Iv~~Gk~~~~l~~a~~~~--~~~~v~ii~le~L~Pfp~~~i~~~l~k~~ 942 (1021)
+.. .+.+++.+.++|.|++||++|.+++.++++++++ .+++++|||+++|+|||+++|.+++++|+
T Consensus 553 -------~~~-----~~iGK~~vlreG~dvtIia~G~mv~~Al~AA~~L~~~GI~vtVIdlr~ikPLD~e~I~~~~~k~~ 620 (701)
T PLN02225 553 -------GLP-----IEIGRGRVLVEGQDVALLGYGAMVQNCLHAHSLLSKLGLNVTVADARFCKPLDIKLVRDLCQNHK 620 (701)
T ss_pred -------Ccc-----ccCcceEEEEeCCCEEEEeccHHHHHHHHHHHHHHhcCCCEEEEecCCCCCCCHHHHHHHHhhcC
Confidence 000 1234555678899999999999999999999886 47899999999999999999999999999
Q ss_pred CceEEEEecCCcccchHhhHHHHHHHHHHhhccCCCCcEEEEcCCCCcCCCcccH
Q 001713 943 NAEVVWSQEEPMNMGAYTYIAPRLCTAMKAVDRGTMEDIKYVGRAPSAASATGFY 997 (1021)
Q Consensus 943 ~~~~vwvqEe~~n~G~~~~v~~~i~~~~~~l~~~~~~~~~~vgr~~~~~pa~g~~ 997 (1021)
++ |+++|... +|+++.|+..+.+.-. .+ ...+++.+|-|+.-.+ .|..
T Consensus 621 ~v--VTvEE~~~-GG~Gs~Va~~l~~~~~-~~--~~~~v~~iGipd~F~~-~G~~ 668 (701)
T PLN02225 621 FL--ITVEEGCV-GGFGSHVAQFIALDGQ-LD--GNIKWRPIVLPDGYIE-EASP 668 (701)
T ss_pred eE--EEEcCCCC-CchHHHHHHHHHhcCC-Cc--CCCcEEEEecCCcCcC-CCCH
Confidence 87 99988876 9999999999977410 00 0147899999886655 5533
No 29
>PTZ00182 3-methyl-2-oxobutanate dehydrogenase; Provisional
Probab=100.00 E-value=6.7e-39 Score=362.84 Aligned_cols=307 Identities=20% Similarity=0.280 Sum_probs=261.5
Q ss_pred CcCHHHHHHHHHHHHHhcCCcEEEEcccCCC--cccccccceeccCCcCceeccCCCcccccCCcccEEecCccchHHHH
Q 001713 635 GIDWALGEALAFATLLVEGNHVRLSGQDVER--GTFSHRHSVLHDQETGEQYCPLDHVMMNQDAEMFTVSNSSLSEFGVL 712 (1021)
Q Consensus 635 ~idw~~AE~lA~~~ll~~~~~Vrl~GeDv~r--GtF~~RHavl~dq~t~~~y~pL~~L~~~~~~g~~rV~nspLSE~~vl 712 (1021)
.++|..+-+.|+..+++++++|.+.|+|++. |+|.. + +++. ++||+.|++|++|+|++++
T Consensus 34 ~~~~~~~~~~~L~~~~~~d~~iv~l~~D~~~~G~~~~~---------~-------~~f~--~~fgP~R~id~GIaEq~~v 95 (355)
T PTZ00182 34 KMNVREAINSALDEELARDPKVFVLGEDVAQYGGVYKC---------T-------KGLL--DKYGPDRVFDTPITEQGFA 95 (355)
T ss_pred chHHHHHHHHHHHHHHhhCCCEEEEeCCccccCCchhh---------h-------HHHH--HHhCCCceeecCccHHHHH
Confidence 3678888899999999999999999999962 56776 5 8899 9999999999999999999
Q ss_pred HHHHhhccCCCCcceEehhhhhhhHhhHHHHHHHHHhhh-hhhhc----CccceEEEeCccCC-CCCcCCcCchhhHhhh
Q 001713 713 GFELGYSMENPNSLVMWEAQFGDFANGAQVIFDQFVNSG-ESKWL----RQSGLVVMLPHGYD-GQGPEHSSARLERFLQ 786 (1021)
Q Consensus 713 Gfe~G~a~~g~~~lviwEaqFgDF~n~Aq~~iDqfi~s~-~~kw~----~~~~lV~~lPhG~~-G~GpeHSs~r~Er~Lq 786 (1021)
|++.|+|+.|.+|++ ++||+||++.| +||+++.. ..+|. .+.|+|++.++|.. +.||+||++ +|++
T Consensus 96 g~AaGlA~~G~~Pvv--~~~fa~Fl~ra---~dQi~~d~a~~~~~~~g~~~v~vv~~~~~g~~g~~G~tHs~~-~ea~-- 167 (355)
T PTZ00182 96 GFAIGAAMNGLRPIA--EFMFADFIFPA---FDQIVNEAAKYRYMSGGQFDCPIVIRGPNGAVGHGGAYHSQS-FEAY-- 167 (355)
T ss_pred HHHHHHHhCCCEEEE--EechhhHHHHH---HHHHHHHHHHhhcccCCCccCCEEEEeCCCCCCCCCCcccch-HHHH--
Confidence 999999999999976 89999999999 88876653 23343 57899999998774 579999998 7887
Q ss_pred ccCCCCCcccCCCchhhhcccccCeEEEecCCHHHHHHHHHHHHhcCCCCcEEEEeeccccCCccccCCcccccccCCCC
Q 001713 787 MSDDNPYVIPEMDSTLRTQIQECNWQIVNVTTPANYFHVLRRQIHREFRKPLVVMSPKNLLRHKECKSNLSEFDDVQGHP 866 (1021)
Q Consensus 787 l~~e~~~~~~~ipg~~~~~~~~~Nl~Vv~pstpad~fhlLrrqi~~~~~kPliv~~pK~Llr~~~~~s~~~e~~~~~~~~ 866 (1021)
+.++|| |+|++|+||.|++++|+.++.. ++|++|++||.|+|.+......
T Consensus 168 --------lr~iPn----------~~V~~Psd~~e~~~~l~~a~~~--~~P~~i~~p~~l~r~~~~~~~~---------- 217 (355)
T PTZ00182 168 --------FAHVPG----------LKVVAPSDPEDAKGLLKAAIRD--PNPVVFFEPKLLYRESVEVVPE---------- 217 (355)
T ss_pred --------HhcCCC----------CEEEeeCCHHHHHHHHHHHHhC--CCcEEEEeehHHhCCCCCCCCc----------
Confidence 458885 9999999999999999999975 8999999999999875421110
Q ss_pred CCCCCCCcceEeecCccccccCCCCCeEEEEeechhHHHHHHHHHHc--CCCcEEEEEecccCCCCHHHHHHHHHcCCCc
Q 001713 867 GFDKQGTRFKRLIKDQNEHSDLEEGIRRLILCSGKVYYELYEERKKH--SASDIAICRVEQLCPFPYDLVQRELKRYPNA 944 (1021)
Q Consensus 867 ~~~~~~~~f~~vi~~~~~~~~~~~g~~~~Iv~~Gk~~~~l~~a~~~~--~~~~v~ii~le~L~Pfp~~~i~~~l~k~~~~ 944 (1021)
+.+. .+++++.+.++|.|++|||||.++..++++++.+ +++++.||++++|+|||.++|.++++|++++
T Consensus 218 ------~~~~---~~~Gk~~vl~~G~di~Iia~Gs~~~~aleAa~~L~~~Gi~v~vI~~~~l~Pld~e~i~~~~~~~~~I 288 (355)
T PTZ00182 218 ------ADYT---LPLGKAKVVREGKDVTIVGYGSQVHVALKAAEELAKEGISCEVIDLRSLRPWDRETIVKSVKKTGRC 288 (355)
T ss_pred ------cccc---ccCCcceEecCCCCEEEEEeCHHHHHHHHHHHHHHhCCCcEEEEEEeeCCCCCHHHHHHHHhcCCEE
Confidence 1111 1235556678999999999999999999999876 4789999999999999999999999999987
Q ss_pred eEEEEecCCcccchHhhHHHHHHHHH-HhhccCCCCcEEEEcCCCCcCCCcc-cHHHHHHHHHHHHHHhc
Q 001713 945 EVVWSQEEPMNMGAYTYIAPRLCTAM-KAVDRGTMEDIKYVGRAPSAASATG-FYQVHVKEQSELMQKAI 1012 (1021)
Q Consensus 945 ~~vwvqEe~~n~G~~~~v~~~i~~~~-~~l~~~~~~~~~~vgr~~~~~pa~g-~~~~h~~e~~~i~~~a~ 1012 (1021)
|+++|....+|+++.|+..+.+.. +.|. .+++++|-++.+.|..+ ++....+.-++|++.+-
T Consensus 289 --vvvEE~~~~GGlG~~Va~~l~e~~~~~l~----~pv~ri~~~d~~~p~~~~le~~~~~~~~~i~~~~~ 352 (355)
T PTZ00182 289 --VIVHEAPPTCGIGAEIAAQIMEDCFLYLE----APIKRVCGADTPFPYAKNLEPAYLPDKEKVVEAAK 352 (355)
T ss_pred --EEEEeCCCCCCHHHHHHHHHHHhhhhhcC----CCeEEeCCCCccCCCChHHHHHhCCCHHHHHHHHH
Confidence 999999999999999999998863 4443 58999999999999777 68888899999988764
No 30
>CHL00144 odpB pyruvate dehydrogenase E1 component beta subunit; Validated
Probab=100.00 E-value=1.5e-38 Score=356.81 Aligned_cols=306 Identities=19% Similarity=0.215 Sum_probs=254.8
Q ss_pred cCHHHHHHHHHHHHHhcCCcEEEEcccCCC--cccccccceeccCCcCceeccCCCcccccCCcccEEecCccchHHHHH
Q 001713 636 IDWALGEALAFATLLVEGNHVRLSGQDVER--GTFSHRHSVLHDQETGEQYCPLDHVMMNQDAEMFTVSNSSLSEFGVLG 713 (1021)
Q Consensus 636 idw~~AE~lA~~~ll~~~~~Vrl~GeDv~r--GtF~~RHavl~dq~t~~~y~pL~~L~~~~~~g~~rV~nspLSE~~vlG 713 (1021)
+....|.+.++..++.++++|.+.|+|++. |.|+. | +++. ++|+..|++|+||+|++++|
T Consensus 4 ~~~~~a~~~~L~~~~~~dp~iv~l~~d~~~~~g~~~~---------~-------~~f~--~~fp~~R~~n~gIaEq~~vg 65 (327)
T CHL00144 4 VFLFEALREAIDEEMARDPRVFVIGEDVGHYGGSYKV---------T-------KGLH--EKYGDLRVLDTPIAENSFTG 65 (327)
T ss_pred chHHHHHHHHHHHHHhhCCCEEEEeCcccccCCchhH---------H-------HHHH--HHCCCccEeeccccHHHHHH
Confidence 455667888899999999999999999984 56776 5 7898 88976799999999999999
Q ss_pred HHHhhccCCCCcceEehhhhhhhHhhHHHHHHHHHhh---hhhhhc--CccceEEEeCccC-CCCCcCCcCchhhHhhhc
Q 001713 714 FELGYSMENPNSLVMWEAQFGDFANGAQVIFDQFVNS---GESKWL--RQSGLVVMLPHGY-DGQGPEHSSARLERFLQM 787 (1021)
Q Consensus 714 fe~G~a~~g~~~lviwEaqFgDF~n~Aq~~iDqfi~s---~~~kw~--~~~~lV~~lPhG~-~G~GpeHSs~r~Er~Lql 787 (1021)
++.|+|+.|.+|++ +.+|.+|+..| +||+.+. ..++++ .+.|+|++.|.|. .+.|++||++ +|.+
T Consensus 66 ~AaGlA~~G~~pvv--~~~~~~f~~ra---~dQi~~~~a~~~~~~gg~~~~~vv~~~~g~~~~~~G~tHs~~-~ea~--- 136 (327)
T CHL00144 66 MAIGAAMTGLRPIV--EGMNMGFLLLA---FNQISNNAGMLHYTSGGNFTIPIVIRGPGGVGRQLGAEHSQR-LESY--- 136 (327)
T ss_pred HHHHHHHCCCEEEE--EeehhhHHHHH---HHHHHHHHHHHhhccCCCccCCEEEEecCCCCCCCCcccccc-HHHH---
Confidence 99999999999988 99999999999 6665544 223333 3579999988544 4789999999 7887
Q ss_pred cCCCCCcccCCCchhhhcccccCeEEEecCCHHHHHHHHHHHHhcCCCCcEEEEeeccccCCccccCCcccccccCCCCC
Q 001713 788 SDDNPYVIPEMDSTLRTQIQECNWQIVNVTTPANYFHVLRRQIHREFRKPLVVMSPKNLLRHKECKSNLSEFDDVQGHPG 867 (1021)
Q Consensus 788 ~~e~~~~~~~ipg~~~~~~~~~Nl~Vv~pstpad~fhlLrrqi~~~~~kPliv~~pK~Llr~~~~~s~~~e~~~~~~~~~ 867 (1021)
+.++|| |+|++|++|.|++++|++++.. ++|++|++||.|||.+... ..
T Consensus 137 -------~~~iPg----------l~V~~Psd~~d~~~~l~~a~~~--~~Pv~ire~~~l~~~~~~v------~~------ 185 (327)
T CHL00144 137 -------FQSVPG----------LQIVACSTPYNAKGLLKSAIRS--NNPVIFFEHVLLYNLKEEI------PD------ 185 (327)
T ss_pred -------HhcCCC----------CEEEEeCCHHHHHHHHHHHHhC--CCcEEEEEcHHhcCCCCCC------CC------
Confidence 569996 9999999999999999999975 7999999999999864221 11
Q ss_pred CCCCCCcceEeecCccccccCCCCCeEEEEeechhHHHHHHHHHHc--CCCcEEEEEecccCCCCHHHHHHHHHcCCCce
Q 001713 868 FDKQGTRFKRLIKDQNEHSDLEEGIRRLILCSGKVYYELYEERKKH--SASDIAICRVEQLCPFPYDLVQRELKRYPNAE 945 (1021)
Q Consensus 868 ~~~~~~~f~~vi~~~~~~~~~~~g~~~~Iv~~Gk~~~~l~~a~~~~--~~~~v~ii~le~L~Pfp~~~i~~~l~k~~~~~ 945 (1021)
..+. .+++++.+.++|.|++|||+|.+++.++++++.| ++++++|||+++|+|||+++|.++++||+++
T Consensus 186 -----~~~~---~~~Gk~~v~~~G~ditiia~G~~v~~al~Aa~~L~~~Gi~~~VId~~~ikPlD~~~i~~~~~~t~~v- 256 (327)
T CHL00144 186 -----NEYL---LPLEKAEVVRPGNDITILTYSRMRHHVLQAVKVLVEKGYDPEIIDLISLKPLDLGTISKSVKKTHKV- 256 (327)
T ss_pred -----CCcc---ccCCeeEEEEcCCCEEEEEccHHHHHHHHHHHHHHhcCCCEEEEecCcCCCCCHHHHHHHHHhhCcE-
Confidence 1110 1345566788999999999999999999999876 5799999999999999999999999999998
Q ss_pred EEEEecCCcccchHhhHHHHHHHHH-HhhccCCCCcEEEEcCCCCcCCCcc-cHHHHHHHHHHHHHHhcC
Q 001713 946 VVWSQEEPMNMGAYTYIAPRLCTAM-KAVDRGTMEDIKYVGRAPSAASATG-FYQVHVKEQSELMQKAIQ 1013 (1021)
Q Consensus 946 ~vwvqEe~~n~G~~~~v~~~i~~~~-~~l~~~~~~~~~~vgr~~~~~pa~g-~~~~h~~e~~~i~~~a~~ 1013 (1021)
|+++|....+|++++|+..+.+.. ..++ .+++++|-++.+.|..| ....+...-+.|++.+..
T Consensus 257 -v~vEE~~~~gGlG~~va~~l~e~~f~~~~----~pv~rl~~~d~~~~~~~~~~~~~gl~~~~I~~~i~~ 321 (327)
T CHL00144 257 -LIVEECMKTGGIGAELIAQINEHLFDELD----APIVRLSSQDVPTPYNGPLEEATVIQPAQIIEAVEQ 321 (327)
T ss_pred -EEEECCCCCCCHHHHHHHHHHHhchhhcC----CCeEEEccCCCcCCCCccHHHHhCCCHHHHHHHHHH
Confidence 999999999999999999998863 2233 58999999999888555 677777777777766543
No 31
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=100.00 E-value=2e-38 Score=368.75 Aligned_cols=304 Identities=16% Similarity=0.187 Sum_probs=253.5
Q ss_pred CHHHHHHHHHHHHHhcCCcEEEEcccCCC--cccccccceeccCCcCceeccCCCcccccCCcccEEecCccchHHHHHH
Q 001713 637 DWALGEALAFATLLVEGNHVRLSGQDVER--GTFSHRHSVLHDQETGEQYCPLDHVMMNQDAEMFTVSNSSLSEFGVLGF 714 (1021)
Q Consensus 637 dw~~AE~lA~~~ll~~~~~Vrl~GeDv~r--GtF~~RHavl~dq~t~~~y~pL~~L~~~~~~g~~rV~nspLSE~~vlGf 714 (1021)
.+..|.+.|+..+|+++++|+++|+|+.. |.|+. | ++|. ++||+.|++|+||+|++++|+
T Consensus 143 ~~r~a~~~al~~~~~~d~~vv~i~~Dv~~~~ga~~~---------t-------~~l~--~~fgp~R~id~gIaEq~~vg~ 204 (464)
T PRK11892 143 TVREALRDAMAEEMRRDEDVFVMGEEVAEYQGAYKV---------T-------QGLL--QEFGARRVIDTPITEHGFAGI 204 (464)
T ss_pred HHHHHHHHHHHHHHhhCcCEEEEeCCccccCCcccc---------c-------hHHH--HHhCccceeecCccHHHHHHH
Confidence 44557778899999999999999999975 78888 6 8898 899999999999999999999
Q ss_pred HHhhccCCCCcceEehhhhhhhHhhHHHHHHHHHhhh-hhhh--c--CccceEEEeCccC-CCCCcCCcCchhhHhhhcc
Q 001713 715 ELGYSMENPNSLVMWEAQFGDFANGAQVIFDQFVNSG-ESKW--L--RQSGLVVMLPHGY-DGQGPEHSSARLERFLQMS 788 (1021)
Q Consensus 715 e~G~a~~g~~~lviwEaqFgDF~n~Aq~~iDqfi~s~-~~kw--~--~~~~lV~~lPhG~-~G~GpeHSs~r~Er~Lql~ 788 (1021)
+.|+|+.|.+|+| |+|+.+|+..| +||++++. ...| + .++|+|++.|+|. .+.|++||+. .+.|
T Consensus 205 AaGlA~~G~rPiv--~~~~~~f~~ra---~dQI~n~~ak~~~~sgg~~~~pVv~~g~~G~~~~~G~hhs~~-d~a~---- 274 (464)
T PRK11892 205 GVGAAFAGLKPIV--EFMTFNFAMQA---IDQIINSAAKTLYMSGGQMGCPIVFRGPNGAAARVAAQHSQD-YAAW---- 274 (464)
T ss_pred HHHHHhCCCEEEE--EEehHHHHHHH---HHHHHHHHhHHhhhcCCccCCCEEEEecCCCCCCCCCccccC-HHHH----
Confidence 9999999999987 99999999999 77776542 2333 2 3689999999976 5789988888 6676
Q ss_pred CCCCCcccCCCchhhhcccccCeEEEecCCHHHHHHHHHHHHhcCCCCcEEEEeeccccCCccccCCcccccccCCCCCC
Q 001713 789 DDNPYVIPEMDSTLRTQIQECNWQIVNVTTPANYFHVLRRQIHREFRKPLVVMSPKNLLRHKECKSNLSEFDDVQGHPGF 868 (1021)
Q Consensus 789 ~e~~~~~~~ipg~~~~~~~~~Nl~Vv~pstpad~fhlLrrqi~~~~~kPliv~~pK~Llr~~~~~s~~~e~~~~~~~~~~ 868 (1021)
+.++|| |+|++|+||+|++++|+.+++. ++|++|+++|.+|+.+..+..++++.
T Consensus 275 ------~~~iPg----------l~V~~P~d~~d~~~ll~~ai~~--~~Pv~ile~~~ry~~~~~vp~~~~~~-------- 328 (464)
T PRK11892 275 ------YSHIPG----------LKVVAPYSAADAKGLLKAAIRD--PNPVIFLENEILYGQSFDVPKLDDFV-------- 328 (464)
T ss_pred ------HhhCCC----------CEEEEeCCHHHHHHHHHHHhhC--CCcEEEEechhhcCCCCCCCCcCCcc--------
Confidence 669996 9999999999999999999976 89999999999997643222222221
Q ss_pred CCCCCcceEeecCccccccCCCCCeEEEEeechhHHHHHHHHHHc--CCCcEEEEEecccCCCCHHHHHHHHHcCCCceE
Q 001713 869 DKQGTRFKRLIKDQNEHSDLEEGIRRLILCSGKVYYELYEERKKH--SASDIAICRVEQLCPFPYDLVQRELKRYPNAEV 946 (1021)
Q Consensus 869 ~~~~~~f~~vi~~~~~~~~~~~g~~~~Iv~~Gk~~~~l~~a~~~~--~~~~v~ii~le~L~Pfp~~~i~~~l~k~~~~~~ 946 (1021)
.+.|++.+.++|.|+||||+|.+++.+++++++| ++++++|||+++|+|||.++|.++++||+++
T Consensus 329 -----------~~~Gka~v~r~G~DvtIva~G~~v~~Al~Aa~~L~~~GI~~~VIdl~tlkPlD~~~i~~sv~kt~~v-- 395 (464)
T PRK11892 329 -----------LPIGKARIHREGKDVTIVSFSIGMTYALKAAEELAKEGIDAEVIDLRTIRPMDTETIVESVKKTNRL-- 395 (464)
T ss_pred -----------ccCceEEEEEcCCCEEEEEccHHHHHHHHHHHHHHhcCCCEEEEECCCCCcCCHHHHHHHHHhcCeE--
Confidence 1345666788999999999999999999999887 5799999999999999999999999999998
Q ss_pred EEEecCCcccchHhhHHHHHHHH-HHhhccCCCCcEEEEcCCCCcCCCcccHHHHH-HHHHHHHHHh
Q 001713 947 VWSQEEPMNMGAYTYIAPRLCTA-MKAVDRGTMEDIKYVGRAPSAASATGFYQVHV-KEQSELMQKA 1011 (1021)
Q Consensus 947 vwvqEe~~n~G~~~~v~~~i~~~-~~~l~~~~~~~~~~vgr~~~~~pa~g~~~~h~-~e~~~i~~~a 1011 (1021)
|+++|....+|++++|+..+.+. ++.++ .++.++|-++.+.|.......+. +.-++|++.+
T Consensus 396 vtvEE~~~~gGlG~~va~~l~e~~f~~l~----~pv~ri~~~d~~~~~~~~le~~~l~~~~~Iv~av 458 (464)
T PRK11892 396 VTVEEGWPQSGVGAEIAARVMEQAFDYLD----APVLRVTGKDVPMPYAANLEKLALPSVAEVVEAV 458 (464)
T ss_pred EEEeCCCcCCcHHHHHHHHHHHhCccccC----CCeEEeccCCccCCcHHHHHHhcCCCHHHHHHHH
Confidence 99999999999999999999886 34443 68999999998887544333333 4666777654
No 32
>PLN02683 pyruvate dehydrogenase E1 component subunit beta
Probab=100.00 E-value=1.2e-37 Score=352.68 Aligned_cols=313 Identities=15% Similarity=0.206 Sum_probs=262.0
Q ss_pred CCcCHHHHHHHHHHHHHhcCCcEEEEcccCCC--cccccccceeccCCcCceeccCCCcccccCCcccEEecCccchHHH
Q 001713 634 EGIDWALGEALAFATLLVEGNHVRLSGQDVER--GTFSHRHSVLHDQETGEQYCPLDHVMMNQDAEMFTVSNSSLSEFGV 711 (1021)
Q Consensus 634 ~~idw~~AE~lA~~~ll~~~~~Vrl~GeDv~r--GtF~~RHavl~dq~t~~~y~pL~~L~~~~~~g~~rV~nspLSE~~v 711 (1021)
..++|..|.+.|+..+++++++|++.|+|++. |+|.. | ++|. +++++.|++|++|+|+++
T Consensus 25 ~~~~~~~a~~~aL~e~~~~d~~iv~i~~D~~~~~g~~~~---------~-------~~l~--~~~~P~R~~d~GIAEq~~ 86 (356)
T PLN02683 25 KEMTVRDALNSALDEEMSADPKVFIMGEEVGEYQGAYKI---------T-------KGLL--QKYGPDRVLDTPITEAGF 86 (356)
T ss_pred cccHHHHHHHHHHHHHHhhCcCEEEEccccccccCccch---------h-------hhHH--HHhCCCcEEECchhHHHH
Confidence 34788899999999999999999999999975 78887 5 7888 889999999999999999
Q ss_pred HHHHHhhccCCCCcceEehhhhhhhHhhHHHHHHHHHhh-hhhhhc--C--ccceEEEeCccC-CCCCcCCcCchhhHhh
Q 001713 712 LGFELGYSMENPNSLVMWEAQFGDFANGAQVIFDQFVNS-GESKWL--R--QSGLVVMLPHGY-DGQGPEHSSARLERFL 785 (1021)
Q Consensus 712 lGfe~G~a~~g~~~lviwEaqFgDF~n~Aq~~iDqfi~s-~~~kw~--~--~~~lV~~lPhG~-~G~GpeHSs~r~Er~L 785 (1021)
+|++.|+|+.|.+|++ ++||.+|+..| +||++++ +..+|. . ..|++++.|+|. .|.|++||+. .+.+
T Consensus 87 vg~AaGlA~~G~~P~v--~~~~~~f~~ra---~dQi~~dva~~~~~~~g~~~~pV~i~~~~G~~~g~G~tH~~~-~~a~- 159 (356)
T PLN02683 87 TGIGVGAAYAGLKPVV--EFMTFNFSMQA---IDHIINSAAKTNYMSAGQISVPIVFRGPNGAAAGVGAQHSQC-FAAW- 159 (356)
T ss_pred HHHHHHHHHCCCEEEE--EEehhhHHHHH---HHHHHHHHHHhccccCCCccCCEEEEEeCCCCCCCCCccccC-HHHH-
Confidence 9999999999999988 99999999999 7776654 333343 3 379999999987 5789999888 5676
Q ss_pred hccCCCCCcccCCCchhhhcccccCeEEEecCCHHHHHHHHHHHHhcCCCCcEEEEeeccccCCccccCCcccccccCCC
Q 001713 786 QMSDDNPYVIPEMDSTLRTQIQECNWQIVNVTTPANYFHVLRRQIHREFRKPLVVMSPKNLLRHKECKSNLSEFDDVQGH 865 (1021)
Q Consensus 786 ql~~e~~~~~~~ipg~~~~~~~~~Nl~Vv~pstpad~fhlLrrqi~~~~~kPliv~~pK~Llr~~~~~s~~~e~~~~~~~ 865 (1021)
|.++|| |+|+.|+++.|+.++|+.++.. ++|++|++||.+++...... ++...
T Consensus 160 ---------lr~iPn----------l~V~~Pad~~e~~~~l~~a~~~--~gPv~ir~~~~~~~~~~~~~--~~~~~---- 212 (356)
T PLN02683 160 ---------YSSVPG----------LKVLAPYSSEDARGLLKAAIRD--PDPVVFLENELLYGESFPVS--AEVLD---- 212 (356)
T ss_pred ---------HhcCCC----------CEEEEeCCHHHHHHHHHHHHhC--CCcEEEEEehhhccCCCCCC--CCCCC----
Confidence 568995 9999999999999999999975 78999999999998542211 11100
Q ss_pred CCCCCCCCcceEeecCccccccCCCCCeEEEEeechhHHHHHHHHHHc--CCCcEEEEEecccCCCCHHHHHHHHHcCCC
Q 001713 866 PGFDKQGTRFKRLIKDQNEHSDLEEGIRRLILCSGKVYYELYEERKKH--SASDIAICRVEQLCPFPYDLVQRELKRYPN 943 (1021)
Q Consensus 866 ~~~~~~~~~f~~vi~~~~~~~~~~~g~~~~Iv~~Gk~~~~l~~a~~~~--~~~~v~ii~le~L~Pfp~~~i~~~l~k~~~ 943 (1021)
..+. .+.|++.+.++|.|++|||+|.++..++++++++ ++++++||++++|+|||.++|.++++||++
T Consensus 213 -------~~~~---~~~Gk~~v~r~G~dvtIia~G~~v~~Al~Aa~~L~~~GI~v~VId~~~ikPlD~~~l~~~~~~t~~ 282 (356)
T PLN02683 213 -------SSFV---LPIGKAKIEREGKDVTIVAFSKMVGYALKAAEILAKEGISAEVINLRSIRPLDRDTINASVRKTNR 282 (356)
T ss_pred -------cccc---ccCCeeEEEEcCCCEEEEEccHHHHHHHHHHHHHHhcCCCEEEEECCCCCccCHHHHHHHHhhcCe
Confidence 0111 1235556678899999999999999999999876 579999999999999999999999999998
Q ss_pred ceEEEEecCCcccchHhhHHHHHHHHH-HhhccCCCCcEEEEcCCCCcCCCcc-cHHHHHHHHHHHHHHhcCC
Q 001713 944 AEVVWSQEEPMNMGAYTYIAPRLCTAM-KAVDRGTMEDIKYVGRAPSAASATG-FYQVHVKEQSELMQKAIQP 1014 (1021)
Q Consensus 944 ~~~vwvqEe~~n~G~~~~v~~~i~~~~-~~l~~~~~~~~~~vgr~~~~~pa~g-~~~~h~~e~~~i~~~a~~~ 1014 (1021)
+ |+++|...++|++++|+..+.+.. ..++ .+++++|-++.+.|... +++...+.-++|++.+.++
T Consensus 283 v--vtvEE~~~~GGlGs~Va~~l~e~~f~~~~----~~v~rlg~~d~~~p~~~~le~~~~p~~~~i~~a~~~~ 349 (356)
T PLN02683 283 L--VTVEEGWPQHGVGAEICASVVEESFDYLD----APVERIAGADVPMPYAANLERLALPQVEDIVRAAKRA 349 (356)
T ss_pred E--EEEeCCCcCCCHHHHHHHHHHHhchhccC----CCeEEeccCCcCCCccHHHHHhhCCCHHHHHHHHHHH
Confidence 8 999999999999999999998863 2232 58999999998888665 7888888999998887653
No 33
>TIGR00232 tktlase_bact transketolase, bacterial and yeast. This model is designed to capture orthologs of bacterial transketolases. The group includes two from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous.
Probab=100.00 E-value=3.7e-35 Score=355.70 Aligned_cols=467 Identities=13% Similarity=0.155 Sum_probs=301.8
Q ss_pred eccccCCcccccceeehHHHHhHHhcCC-----CCCCCcEEEEEeCccccCCccHHHHHHHhc---CCCCCCcccEEEEE
Q 001713 359 LVANPSHLEAVDPVVIGKTRAKQYYSND-----MDRTKNMAVLIHGDGSFAGQGVVYETLHLS---ALPNYSIGGTIHIV 430 (1021)
Q Consensus 359 l~~npShlg~~~PvA~G~A~A~q~~~~d-----~~~~~~v~v~~~GDgA~sGqG~v~EalnlA---~LP~y~~GGvI~Vv 430 (1021)
+....++||.++++|+|+|+|.|+.+.. ....+..++|++|||+++ ||++||++|+| +||+ +|+||
T Consensus 105 i~~~tG~lG~gl~~AvG~Ala~k~~~~~~~~~~~~~~~~~v~~~~GDG~l~-EG~~~EA~~~A~~~~L~n-----Li~iv 178 (653)
T TIGR00232 105 VEATTGPLGQGIANAVGMAIAQKTLAATFNKPGFEIVDHYTYVFVGDGCLQ-EGISYEVASLAGHLKLGK-----LIVLY 178 (653)
T ss_pred eeeCCcchhccHHHHHHHHHHHHHHhhhccCCccCCcCCEEEEEEcccccc-ccHHHHHHHHHHHhCCCc-----EEEEE
Confidence 3455688999999999999999986431 112357899999999999 99999999999 9998 89999
Q ss_pred EcCCcccccCCCCCcccccHHHHHhhcCccEEEE-eCCCHHHHHHHHHHHHHHHHcc-CCCEEEEEeeeccCCCC--CCC
Q 001713 431 VNNQVAFTTDPMSGRSSQYCTDVAKALDAPIFHV-NGDDMEAVAHVCELAAEWRQTF-HSDVVVDLVCYRRFGHN--EID 506 (1021)
Q Consensus 431 ~NNq~g~tT~~~~~rs~~~~sd~Aka~g~p~~~V-dG~D~eAV~~a~~~A~e~rr~~-~gPvlIe~vtYR~~GHn--e~D 506 (1021)
.||+++++++..... ...+.+++++|||+++.| ||+|++++.+|++.|. +. ++|++|++.|+|.+|.+ |..
T Consensus 179 d~N~~~i~~~~~~~~-~~~~~~~~~a~Gw~~~~v~DG~D~~ai~~A~~~a~----~~~~~P~~I~~~T~~g~G~~~~e~~ 253 (653)
T TIGR00232 179 DSNRISIDGAVDGSF-TEDVAKRFEAYGWEVLEVEDGHDLAAIDAAIEEAK----ASKDKPTLIEVTTTIGFGSPNKAGT 253 (653)
T ss_pred eCCCeeecccccccc-CccHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHH----hCCCCCEEEEEEeeecccCcccCCC
Confidence 999999999988775 578999999999999999 9999999988777663 44 48999999999999985 333
Q ss_pred CCCC---CCHHHHHHHHhC----C-------CHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHchhcCCCccch
Q 001713 507 EPSF---TQPKMYKIIRSH----P-------SSLEIYQNKLLECQHVTQEDINKIQEKVNRILSEEFVASKDYVPNRRDW 572 (1021)
Q Consensus 507 dp~y---tqp~ey~~i~~~----~-------dpi~~y~~~Li~~Gi~t~ee~~~i~~~~~~~l~~a~~~A~~~~p~~~~~ 572 (1021)
.... -.+++++..++. . ++.+.|+..+.++|- +..+++.+.+++..+. .|.....
T Consensus 254 ~~~H~~~~~~~~~~~~~~~l~~~~~~f~v~~~~~~~~~~~~~~~~~-------~~~~~w~~~~~~~~~~----~p~~~~~ 322 (653)
T TIGR00232 254 HGVHGAPLGDEDVKLTKKNLGWNYNPFEVPQEVYDHFQKTVKERGA-------KAEQEWNELFAAYKKK----YPELAAE 322 (653)
T ss_pred CcccCCCCCHHHHHHHHHHhCCCCCCccCCHHHHHHHHHHHHhccH-------HHHHHHHHHHHHHHHH----CHHHHHH
Confidence 2221 134455443321 1 122223222222221 1111121121111110 0111111
Q ss_pred hhhhccCCCCcccccccCCCCCChHHHHHHHHhhhcCCCCCCcccchHHHHHHHHHHhhcCCCcCHHHHHHHHHHHHHhc
Q 001713 573 LSAYWSGFKSPEQLSRIRNTGVKPEILKNVGKAITTLPENFKPHRGVKKVYELRAQMIETGEGIDWALGEALAFATLLVE 652 (1021)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~t~v~~~~l~~i~~~~~~~P~~f~~h~~l~~~l~~R~~~~~~~~~idw~~AE~lA~~~ll~~ 652 (1021)
+...+.+ .++.+....+ |+ +. . ..+-+..|. +-..++..+...
T Consensus 323 ~~~~~~~-------------~~p~~~~~~~-------~~-~~-~--~~~~~atR~-------------~~g~~L~~la~~ 365 (653)
T TIGR00232 323 FTRRLSG-------------ELPADWDKKL-------PE-FK-A--KLQALATRK-------------YSQNVLNAIANV 365 (653)
T ss_pred HHHHHhc-------------cCchhhhhhh-------hh-hh-c--cCcchHHHH-------------HHHHHHHHHHhh
Confidence 1110000 0110000000 00 00 0 000011221 222345666788
Q ss_pred CCcEEEEcccCCCcccccccceeccCCcCceeccCCCcccccCCcccEEecCccchHHHHHHHHhhcc-CCCCcceEehh
Q 001713 653 GNHVRLSGQDVERGTFSHRHSVLHDQETGEQYCPLDHVMMNQDAEMFTVSNSSLSEFGVLGFELGYSM-ENPNSLVMWEA 731 (1021)
Q Consensus 653 ~~~Vrl~GeDv~rGtF~~RHavl~dq~t~~~y~pL~~L~~~~~~g~~rV~nspLSE~~vlGfe~G~a~-~g~~~lviwEa 731 (1021)
+++|.+..-|+...+.... .++ ..+. +++ +.|.+|..|+|++++|++.|+|+ .|.+|++ .
T Consensus 366 ~p~iv~lsaDl~~s~~~~~------~~~-------~~f~--~~~-p~rfi~~GIaEq~mv~~AaGlA~~gG~~p~~---~ 426 (653)
T TIGR00232 366 LPELLGGSADLAPSNLTKW------KGS-------GDLH--ENP-LGNYIHYGVREFAMGAIMNGIALHGGFKPYG---G 426 (653)
T ss_pred CCCEEEEeCCccccCCccc------ccc-------cchh--hcC-CCCeEeecccHHHHHHHHHHHHHcCCCeEEE---E
Confidence 9999988889854322110 000 1133 444 56999999999999999999999 6789998 5
Q ss_pred hhhhhHhhHHHHHHHHHhhhhhhhcCccceEEEeCc-cC--CCCCcCCcCchhhHhhhccCCCCCcccCCCchhhhcccc
Q 001713 732 QFGDFANGAQVIFDQFVNSGESKWLRQSGLVVMLPH-GY--DGQGPEHSSARLERFLQMSDDNPYVIPEMDSTLRTQIQE 808 (1021)
Q Consensus 732 qFgDF~n~Aq~~iDqfi~s~~~kw~~~~~lV~~lPh-G~--~G~GpeHSs~r~Er~Lql~~e~~~~~~~ipg~~~~~~~~ 808 (1021)
-|.-|+..| +||+-.. ...+.|+++...| |+ ...||+| |+ +|-. .++..+|
T Consensus 427 tf~~F~~r~---~~~ir~~----a~~~lpV~~v~th~g~~~G~dG~TH-q~-iedi--------a~lr~iP--------- 480 (653)
T TIGR00232 427 TFLMFVDYA---RPAIRLA----ALMKLPVIYVYTHDSIGVGEDGPTH-QP-IEQL--------ASLRAIP--------- 480 (653)
T ss_pred EhHHHHHHH---HHHHHHH----HhcCCCEEEEEeCCccCCCCCCccc-CC-HHHH--------HHHhcCC---------
Confidence 666666666 4543221 2345799999988 55 3569999 66 6652 2356888
Q ss_pred cCeEEEecCCHHHHHHHHHHHHhcCCCCcEEEEeeccccCCccccCCcccccccCCCCCCCCCCCcceEeecCccccccC
Q 001713 809 CNWQIVNVTTPANYFHVLRRQIHREFRKPLVVMSPKNLLRHKECKSNLSEFDDVQGHPGFDKQGTRFKRLIKDQNEHSDL 888 (1021)
Q Consensus 809 ~Nl~Vv~pstpad~fhlLrrqi~~~~~kPliv~~pK~Llr~~~~~s~~~e~~~~~~~~~~~~~~~~f~~vi~~~~~~~~~ 888 (1021)
||+|+.|+++.++..+++.++.. .+.|++|..++.-+..... ....++.. +. .++ ..
T Consensus 481 -n~~v~~PaD~~E~~~~~~~a~~~-~~gP~~irl~r~~~~~~~~-~~~~~~~~-----------G~--~vl-------~~ 537 (653)
T TIGR00232 481 -NLSVWRPCDGNETAAAWKYALES-QDGPTALILSRQNLPQLEE-SSLEKVLK-----------GG--YVL-------KD 537 (653)
T ss_pred -CCEEEeeCCHHHHHHHHHHHHhc-CCCcEEEEEcCCccCCCCc-ccccccCC-----------Cc--EEE-------Ee
Confidence 49999999999999999999942 3789999988765432110 00011111 21 111 12
Q ss_pred CCCCeEEEEeechhHHHHHHHHHHc--CCCcEEEEEecccCCCCHHH---HHHHHHcCCCceEEEEecCCc
Q 001713 889 EEGIRRLILCSGKVYYELYEERKKH--SASDIAICRVEQLCPFPYDL---VQRELKRYPNAEVVWSQEEPM 954 (1021)
Q Consensus 889 ~~g~~~~Iv~~Gk~~~~l~~a~~~~--~~~~v~ii~le~L~Pfp~~~---i~~~l~k~~~~~~vwvqEe~~ 954 (1021)
++|.|++||++|.++..+++++++| .++++.||++.+++|||.+. +.+.++++..+ |.++|...
T Consensus 538 ~~g~dv~iia~G~~v~~al~Aa~~L~~~Gi~~~VI~~~~ikpld~~~~~~~~~~~~~~~~v--vtvEe~~~ 606 (653)
T TIGR00232 538 SKGPDIILIATGSEVSLAVEAAKKLAAENIKVRVVSMPSFDLFDKQDEEYRESVLPANVTR--LAVEAGAA 606 (653)
T ss_pred cCCCCEEEEEeChHHHHHHHHHHHHHhcCCcEEEEecccCcccccCCHHHHHHHhcccCce--EEEecccH
Confidence 5689999999999999999999887 47999999999999997754 66666666544 77765544
No 34
>PRK09212 pyruvate dehydrogenase subunit beta; Validated
Probab=100.00 E-value=3.3e-36 Score=338.09 Aligned_cols=305 Identities=15% Similarity=0.185 Sum_probs=248.4
Q ss_pred cCHHHHHHHHHHHHHhcCCcEEEEcccCCC--cccccccceeccCCcCceeccCCCcccccCCcccEEecCccchHHHHH
Q 001713 636 IDWALGEALAFATLLVEGNHVRLSGQDVER--GTFSHRHSVLHDQETGEQYCPLDHVMMNQDAEMFTVSNSSLSEFGVLG 713 (1021)
Q Consensus 636 idw~~AE~lA~~~ll~~~~~Vrl~GeDv~r--GtF~~RHavl~dq~t~~~y~pL~~L~~~~~~g~~rV~nspLSE~~vlG 713 (1021)
+.|..+.+.++..+++++++|.+.|+|++. |.|+. | +++. ++||+.|++|++|+|++++|
T Consensus 4 ~~~~~a~~~~L~~~~~~d~~iv~l~~d~~~~~g~~~~---------~-------~~~~--~~fgp~R~~d~gIaE~~~vg 65 (327)
T PRK09212 4 LTVREALRDAMQEEMERDPKVFLMGEEVGEYQGAYKV---------T-------QGLL--EQFGPKRVIDTPITEHGFAG 65 (327)
T ss_pred chHHHHHHHHHHHHHHhCCCEEEEcCcccccCCcchh---------h-------HHHH--HHhCCCceeecchhHHHHHH
Confidence 578889999999999999999999999975 78888 6 7899 89999999999999999999
Q ss_pred HHHhhccCCCCcceEehhhhhhhHhhHHHHHHHHHhh-hhhhhc----CccceEEEeCccC-CCCCcCCcCchhhHhhhc
Q 001713 714 FELGYSMENPNSLVMWEAQFGDFANGAQVIFDQFVNS-GESKWL----RQSGLVVMLPHGY-DGQGPEHSSARLERFLQM 787 (1021)
Q Consensus 714 fe~G~a~~g~~~lviwEaqFgDF~n~Aq~~iDqfi~s-~~~kw~----~~~~lV~~lPhG~-~G~GpeHSs~r~Er~Lql 787 (1021)
++.|+|+.|.+|+| ++|+.+|+..| +||+++. +..+|. .+.|+|++.|.|. .+.|++||++ +|.+
T Consensus 66 ~AaGlA~~G~~Piv--~~~~~~f~~ra---~dQi~~d~a~~~~~~~~~~~v~vv~~~~~g~~~~~G~tH~~~-~ea~--- 136 (327)
T PRK09212 66 LAVGAAFAGLRPIV--EFMTFNFSMQA---IDQIVNSAAKTNYMSGGQLKCPIVFRGPNGAAARVAAQHSQC-YAAW--- 136 (327)
T ss_pred HHHHHHHcCCeeEE--EeehhhHHHHH---HHHHHHHHHHHhhccCCCcCccEEEEeCCCCCCCCCcccccC-HHHH---
Confidence 99999999999988 89999999999 6666554 223333 3689999999876 5789999999 7887
Q ss_pred cCCCCCcccCCCchhhhcccccCeEEEecCCHHHHHHHHHHHHhcCCCCcEEEEeeccccCCccccCCcccccccCCCCC
Q 001713 788 SDDNPYVIPEMDSTLRTQIQECNWQIVNVTTPANYFHVLRRQIHREFRKPLVVMSPKNLLRHKECKSNLSEFDDVQGHPG 867 (1021)
Q Consensus 788 ~~e~~~~~~~ipg~~~~~~~~~Nl~Vv~pstpad~fhlLrrqi~~~~~kPliv~~pK~Llr~~~~~s~~~e~~~~~~~~~ 867 (1021)
+.++|| |+|++|++|.|++++|+.++.. ++|++|++||.+|..+.. ..+
T Consensus 137 -------~r~iP~----------l~V~~P~d~~e~~~~l~~a~~~--~~Pv~i~~~~~~~~~~~~------~~~------ 185 (327)
T PRK09212 137 -------YSHIPG----------LKVVAPYFAADCKGLLKTAIRD--PNPVIFLENEILYGHSHE------VPE------ 185 (327)
T ss_pred -------HhcCCC----------CEEEeeCCHHHHHHHHHHHHhC--CCcEEEEEchhhcCCCCC------CCC------
Confidence 669995 9999999999999999999975 899999999998863211 111
Q ss_pred CCCCCCcceEeecCccccccCCCCCeEEEEeechhHHHHHHHHHHc--CCCcEEEEEecccCCCCHHHHHHHHHcCCCce
Q 001713 868 FDKQGTRFKRLIKDQNEHSDLEEGIRRLILCSGKVYYELYEERKKH--SASDIAICRVEQLCPFPYDLVQRELKRYPNAE 945 (1021)
Q Consensus 868 ~~~~~~~f~~vi~~~~~~~~~~~g~~~~Iv~~Gk~~~~l~~a~~~~--~~~~v~ii~le~L~Pfp~~~i~~~l~k~~~~~ 945 (1021)
..+ + -+.+++.+.++|.|++|||||.++..++++++.+ ++++++||++++|+|||.++|.+++++++++
T Consensus 186 -----~~~-~--~~~Gk~~vl~~G~di~iva~G~~~~~a~eAa~~L~~~Gi~v~vi~~~~l~Pld~~~i~~~~~~~~~v- 256 (327)
T PRK09212 186 -----EEE-S--IPIGKAAILREGSDVTIVTFSIQVKLALEAAELLEKEGISVEVIDLRTLRPLDTETIIESVKKTNRL- 256 (327)
T ss_pred -----CCc-c--ccCCeeEEEEeCCCEEEEEccHHHHHHHHHHHHHHhcCCcEEEEEEecCCCCCHHHHHHHHHhCCeE-
Confidence 000 0 1345566778899999999999999999999876 4799999999999999999999999999988
Q ss_pred EEEEecCCcccchHhhHHHHHHHHH-HhhccCCCCcEEEEcCCCCcCCCcccHHHH-HHHHHHHHHHhc
Q 001713 946 VVWSQEEPMNMGAYTYIAPRLCTAM-KAVDRGTMEDIKYVGRAPSAASATGFYQVH-VKEQSELMQKAI 1012 (1021)
Q Consensus 946 ~vwvqEe~~n~G~~~~v~~~i~~~~-~~l~~~~~~~~~~vgr~~~~~pa~g~~~~h-~~e~~~i~~~a~ 1012 (1021)
|+++|....+|+++.++..+.+.. ..+ ..++..+|-++.+.|..-....+ .+.-++|++.+.
T Consensus 257 -v~vEe~~~~gGlg~~la~~l~~~~~~~~----~~~i~r~~~~~~~~~~~~~le~~~l~~~~~I~~~i~ 320 (327)
T PRK09212 257 -VVVEEGWPFAGVGAEIAALIMKEAFDYL----DAPVERVTGKDVPLPYAANLEKLALPSEEDIIEAVK 320 (327)
T ss_pred -EEEcCCCCCCCHHHHHHHHHHHhCcccc----CCCeEEEcCCCccCCchHHHHHhcCCCHHHHHHHHH
Confidence 999999999999999999998853 222 24666666666666632122222 346667776554
No 35
>PRK12753 transketolase; Reviewed
Probab=100.00 E-value=5.9e-32 Score=327.84 Aligned_cols=467 Identities=13% Similarity=0.119 Sum_probs=299.3
Q ss_pred cccCCcccccceeehHHHHhHHhcCCCC-----CCCcEEEEEeCccccCCccHHHHHHHhc---CCCCCCcccEEEEEEc
Q 001713 361 ANPSHLEAVDPVVIGKTRAKQYYSNDMD-----RTKNMAVLIHGDGSFAGQGVVYETLHLS---ALPNYSIGGTIHIVVN 432 (1021)
Q Consensus 361 ~npShlg~~~PvA~G~A~A~q~~~~d~~-----~~~~v~v~~~GDgA~sGqG~v~EalnlA---~LP~y~~GGvI~Vv~N 432 (1021)
...+|||.++++|+|+|+|.++.+...+ -.+..++|++|||+++ +|++||++|+| +||+ +|+||.|
T Consensus 111 ~~tG~lG~gl~~AvG~A~A~k~~~~~~~~~~~~~~~~~v~~~~GDGel~-EG~~~EA~~~A~~~kL~n-----Li~ivd~ 184 (663)
T PRK12753 111 TTTGPLGQGLANAVGLAIAERTLAAQFNRPGHEIVDHYTYVFMGDGCLM-EGISHEVCSLAGTLGLGK-----LIGFYDH 184 (663)
T ss_pred cCCCcccccHHHHHHHHHHHHHhhhhcCCccccccCCEEEEEECcCccc-cHHHHHHHHHHHHHCCCC-----EEEEEEC
Confidence 4568899999999999999998753111 1247899999999999 99999999999 9997 8999999
Q ss_pred CCcccccCCCCCcccccHHHHHhhcCccEEE-EeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeeeccCCCCC--CCCCC
Q 001713 433 NQVAFTTDPMSGRSSQYCTDVAKALDAPIFH-VNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYRRFGHNE--IDEPS 509 (1021)
Q Consensus 433 Nq~g~tT~~~~~rs~~~~sd~Aka~g~p~~~-VdG~D~eAV~~a~~~A~e~rr~~~gPvlIe~vtYR~~GHne--~Ddp~ 509 (1021)
|+++++++..... +.++.+++++|||+++. |||+|++++++|++.|.+ ..++|++|++.|++-+|+.. .+...
T Consensus 185 N~~~i~~~~~~~~-~~~~~~~f~a~Gw~~~~~vDGhD~~~i~~a~~~a~~---~~~~P~~I~~~T~kG~G~~~~e~~~~~ 260 (663)
T PRK12753 185 NGISIDGETEGWF-TDDTAKRFEAYHWHVIHEIDGHDPQAIKEAILEAQS---VKDKPSLIICRTIIGFGSPNKAGKEES 260 (663)
T ss_pred CCCcCCCChhhhc-ChhHHHHHHHcCCeEEceeCCCCHHHHHHHHHHHHH---CCCCeEEEEEEEeecCCCCcccCCCCc
Confidence 9999999988755 56889999999999995 999999999999998875 35789999999999999973 22222
Q ss_pred CC---CHHHHHHHHhC----CC-------HHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHchhcCCCccchhhh
Q 001713 510 FT---QPKMYKIIRSH----PS-------SLEIYQNKLLECQHVTQEDINKIQEKVNRILSEEFVASKDYVPNRRDWLSA 575 (1021)
Q Consensus 510 yt---qp~ey~~i~~~----~d-------pi~~y~~~Li~~Gi~t~ee~~~i~~~~~~~l~~a~~~A~~~~p~~~~~~~~ 575 (1021)
.. .++++++.++. .+ ....|+. .+.|-. .+++..+.+ +..++..|.....+..
T Consensus 261 H~~~l~~~~~~~~~~~l~~~~~~F~v~~~v~~~~~~--~~~~~~-------~~~~w~~~~----~~~~~~~p~~~~~~~~ 327 (663)
T PRK12753 261 HGAPLGEEEVALTRQKLGWHHPPFEIPKEIYAAWDA--REKGEK-------AEQAWNEKF----AAYKKAYPELAAEFTR 327 (663)
T ss_pred cCCCCCHHHHHHHHHHhCCCCCCCCCCHHHHHHHHh--hhhchH-------HHHHHHHHH----HHHHHHCHHHHHHHHH
Confidence 11 33444433211 00 0011110 111111 111111111 1111111111111111
Q ss_pred hccCCCCcccccccCCCCCChHHHHHHHHhhhcCCCCCCcccchHHHHHHHHHHhhcCCCcCHHHHHHHHHHHHHhcCCc
Q 001713 576 YWSGFKSPEQLSRIRNTGVKPEILKNVGKAITTLPENFKPHRGVKKVYELRAQMIETGEGIDWALGEALAFATLLVEGNH 655 (1021)
Q Consensus 576 ~~~~~~~~~~~~~~~~t~v~~~~l~~i~~~~~~~P~~f~~h~~l~~~l~~R~~~~~~~~~idw~~AE~lA~~~ll~~~~~ 655 (1021)
.+.. .++.+.-..+.+.+. ++...+.++.--.+-..++..+...+++
T Consensus 328 ~~~~-------------~~p~~~~~~~~~~~~--------------------~~~~~~~~~a~r~~~g~~L~~l~~~~p~ 374 (663)
T PRK12753 328 RMSG-------------GLPKDWEKKTQKYIN--------------------ELQANPAKIATRKASQNTLEAYGPLLPE 374 (663)
T ss_pred HhcC-------------CCChhHHHHHHHHHH--------------------HhhccccccHHHHHHHHHHHHHHhhCCC
Confidence 1100 011111111111100 0011111222222344456777788999
Q ss_pred EEEEcccCCCcccccccceeccCCcCceeccCCCcccccCCcccEEecCccchHHHHHHHHhhcc-CCCCcceEehhhhh
Q 001713 656 VRLSGQDVERGTFSHRHSVLHDQETGEQYCPLDHVMMNQDAEMFTVSNSSLSEFGVLGFELGYSM-ENPNSLVMWEAQFG 734 (1021)
Q Consensus 656 Vrl~GeDv~rGtF~~RHavl~dq~t~~~y~pL~~L~~~~~~g~~rV~nspLSE~~vlGfe~G~a~-~g~~~lviwEaqFg 734 (1021)
|.+..-|+..-+-. .+.-...+. +++ +.|.+|..|+|++.++++.|+|+ .|.+|++ .-|+
T Consensus 375 lv~~sADl~~S~~~-------------~~~~~~~f~--~~~-p~r~i~~GIaEq~mv~~aaGlA~~~G~~P~~---~tf~ 435 (663)
T PRK12753 375 LLGGSADLAPSNLT-------------IWSGSKSLK--EDP-AGNYIHYGVREFGMTAIANGIAHHGGFVPYT---ATFL 435 (663)
T ss_pred eEEEccccccccCc-------------ccccccchh--hcC-CCCEEEeeecHHHHHHHHHHHHHhCCCeEEE---EehH
Confidence 99888888542110 000002233 333 46999999999999999999999 8899999 8999
Q ss_pred hhHhhHHHHHHHHHhhhhhhhcCccceEEEeCc-cC--CCCCcCCcCchhhHhhhccCCCCCcccCCCchhhhcccccCe
Q 001713 735 DFANGAQVIFDQFVNSGESKWLRQSGLVVMLPH-GY--DGQGPEHSSARLERFLQMSDDNPYVIPEMDSTLRTQIQECNW 811 (1021)
Q Consensus 735 DF~n~Aq~~iDqfi~s~~~kw~~~~~lV~~lPh-G~--~G~GpeHSs~r~Er~Lql~~e~~~~~~~ipg~~~~~~~~~Nl 811 (1021)
-|+..| .||...+ ...+.|+++..-| |+ ...||+|..--.-. .+..+| ||
T Consensus 436 ~F~~r~---~~qir~~----a~~~l~V~~v~thdg~~~G~DG~THq~iedla----------~lR~iP----------n~ 488 (663)
T PRK12753 436 MFVEYA---RNAARMA----ALMKARQIMVYTHDSIGLGEDGPTHQPVEQLA----------SLRLTP----------NF 488 (663)
T ss_pred HHHHHH---HHHHHHH----HhcCCCeEEEEeCCCcccCCCCcccccHHHHH----------HHhcCC----------CC
Confidence 999888 7876532 3346798887656 55 34699997762222 466888 59
Q ss_pred EEEecCCHHHHHHHHHHHHhcCCCCcEEEEeeccccCCccccC-CcccccccCCCCCCCCCCCcceEeecCccccccCCC
Q 001713 812 QIVNVTTPANYFHVLRRQIHREFRKPLVVMSPKNLLRHKECKS-NLSEFDDVQGHPGFDKQGTRFKRLIKDQNEHSDLEE 890 (1021)
Q Consensus 812 ~Vv~pstpad~fhlLrrqi~~~~~kPliv~~pK~Llr~~~~~s-~~~e~~~~~~~~~~~~~~~~f~~vi~~~~~~~~~~~ 890 (1021)
.|+.|+++.+...+++.++.. .+.|+.+..++.-.......+ ...++. + |. . +.++
T Consensus 489 ~v~~PaD~~E~~~~~~~al~~-~~gP~~irl~R~~~~~~~~~~~~~~~~~---------~--G~--~---------vl~~ 545 (663)
T PRK12753 489 STWRPCDQVEAAVAWKLAIER-HNGPTALILSRQNLAQQERTPEQVKNIA---------R--GG--Y---------ILKD 545 (663)
T ss_pred EEEccCCHHHHHHHHHHHHhc-CCCCEEEEecCCCCCCCCCcccchhhcc---------C--Cc--E---------EEec
Confidence 999999999999999999973 368999987753211100000 000111 1 21 1 2232
Q ss_pred ---CCeEEEEeechhHHHHHHHHHHc--CCCcEEEEEecccCCCCHHHH--HHHHHcCCCceEEEEecC
Q 001713 891 ---GIRRLILCSGKVYYELYEERKKH--SASDIAICRVEQLCPFPYDLV--QRELKRYPNAEVVWSQEE 952 (1021)
Q Consensus 891 ---g~~~~Iv~~Gk~~~~l~~a~~~~--~~~~v~ii~le~L~Pfp~~~i--~~~l~k~~~~~~vwvqEe 952 (1021)
+.|++||++|.+++.+++++++| .++++.||++.++.|||.+.+ ++.+-.......|.++|.
T Consensus 546 ~~~~~dv~iia~Gs~v~~al~Aa~~L~~~gi~~~Vv~~~~~kp~d~~~~~y~~~vl~~~~~~~vtvE~~ 614 (663)
T PRK12753 546 SGGKPDLILIATGSEVEITLQAAEKLTAEGRNVRVVSMPSTDIFDAQDEAYRESVLPSNVTARVAVEAG 614 (663)
T ss_pred cCCCCCEEEEEeCHHHHHHHHHHHHHHhcCCCcEEEECCcCCccchhHHHHHHhhcccccceEEEEccC
Confidence 35999999999999999999887 478999999999999999987 333333221133566543
No 36
>PLN02790 transketolase
Probab=100.00 E-value=8.7e-32 Score=326.46 Aligned_cols=475 Identities=13% Similarity=0.129 Sum_probs=293.5
Q ss_pred eccccCCcccccceeehHHHHhHHhc-----CCCCCCCcEEEEEeCccccCCccHHHHHHHhc---CCCCCCcccEEEEE
Q 001713 359 LVANPSHLEAVDPVVIGKTRAKQYYS-----NDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS---ALPNYSIGGTIHIV 430 (1021)
Q Consensus 359 l~~npShlg~~~PvA~G~A~A~q~~~-----~d~~~~~~v~v~~~GDgA~sGqG~v~EalnlA---~LP~y~~GGvI~Vv 430 (1021)
+....+|+|+++++|+|+|+|.++.+ .+.+..+..++|++|||+++ +|++||+||+| +||+ +|+||
T Consensus 100 i~~~tG~lG~gl~~A~G~A~A~k~~~~~~~~~~~~~~~~~v~~~~GDG~l~-eG~~~EAl~~A~~~~L~n-----li~i~ 173 (654)
T PLN02790 100 IEVTTGPLGQGIANAVGLALAEKHLAARFNKPDHKIVDHYTYCILGDGCQM-EGISNEAASLAGHWGLGK-----LIVLY 173 (654)
T ss_pred ccccCCchhchHHHHHHHHHHHHHHHHHhCCCcccccCCEEEEEECcCccc-chHHHHHHHHHHHhCCCC-----EEEEE
Confidence 34556899999999999999999642 11111247899999999999 99999999999 9997 99999
Q ss_pred EcCCcccccCCCCCcccccHHHHHhhcCccEEEEeC--CCHHHHHHHHHHHHHHHHccCCCEEEEEeeeccCCCCCC-CC
Q 001713 431 VNNQVAFTTDPMSGRSSQYCTDVAKALDAPIFHVNG--DDMEAVAHVCELAAEWRQTFHSDVVVDLVCYRRFGHNEI-DE 507 (1021)
Q Consensus 431 ~NNq~g~tT~~~~~rs~~~~sd~Aka~g~p~~~VdG--~D~eAV~~a~~~A~e~rr~~~gPvlIe~vtYR~~GHne~-Dd 507 (1021)
+||+++++++..... ..++.+++++|||+++.||| +|++++++|++.|.+ ..++|++|++.|++.+|-... +.
T Consensus 174 d~N~~~i~~~~~~~~-~~~~~~~f~a~G~~~~~vdgg~hd~~~l~~a~~~a~~---~~~~P~lI~~~T~kG~G~~~~e~~ 249 (654)
T PLN02790 174 DDNHISIDGDTEIAF-TEDVDKRYEALGWHTIWVKNGNTDYDEIRAAIKEAKA---VTDKPTLIKVTTTIGYGSPNKANS 249 (654)
T ss_pred ecCCccccCCccccc-chhHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHHHh---cCCCeEEEEEEEeecCCCccccCC
Confidence 999999999987543 56788999999999999987 799999999988764 267999999999999998632 22
Q ss_pred CCC--C--CHHHHHHHHh----CCCHHH-------HHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHchhcCCCccch
Q 001713 508 PSF--T--QPKMYKIIRS----HPSSLE-------IYQNKLLECQHVTQEDINKIQEKVNRILSEEFVASKDYVPNRRDW 572 (1021)
Q Consensus 508 p~y--t--qp~ey~~i~~----~~dpi~-------~y~~~Li~~Gi~t~ee~~~i~~~~~~~l~~a~~~A~~~~p~~~~~ 572 (1021)
..+ . .+++++..++ +.+|.. .|.+ ..+.|- ...+++.+.+.+ .....|.....
T Consensus 250 ~~~H~~~~~~~~~~~~~~~l~~~~~~F~~~~~~~~~~~~-~~~~~~-------~~~~~w~~~~~~----~~~~~~~~~~~ 317 (654)
T PLN02790 250 YSVHGAALGEKEVDATRKNLGWPYEPFHVPEDVKSHWSK-HTKEGA-------ALEAEWNAKFAE----YKKKYPEEAAE 317 (654)
T ss_pred CCcCCCCCCHHHHHHHHHHhCCCCCCCcCCHHHHHHHHH-HHhhhh-------hhHHHHHHHHHH----HHhhCHHHHHH
Confidence 221 1 2333433221 111111 0110 001110 001111111111 11101111000
Q ss_pred hhhhccCCCCcccccccCCCCCChHHHHHHHHhhhcCCCCCCcccchHHHHHHHHHHhhcCCCcCHHHHHHHHHHHHHhc
Q 001713 573 LSAYWSGFKSPEQLSRIRNTGVKPEILKNVGKAITTLPENFKPHRGVKKVYELRAQMIETGEGIDWALGEALAFATLLVE 652 (1021)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~t~v~~~~l~~i~~~~~~~P~~f~~h~~l~~~l~~R~~~~~~~~~idw~~AE~lA~~~ll~~ 652 (1021)
+...++. ..+.+.. ..+..+++ -.+ ....|. +-..++..+...
T Consensus 318 ~~~~~~~-------------~~~~~~~----~~~~~~~~---~~~----~~a~R~-------------~~~~~l~~i~~~ 360 (654)
T PLN02790 318 LKSLISG-------------ELPSGWE----KALPTFTP---EDP----ADATRN-------------LSQKCLNALAKV 360 (654)
T ss_pred HHHHhcc-------------CCchhhh----hhhhhhcc---cCc----chHHHH-------------HHHHHHHHHHhh
Confidence 1111100 0000000 00000000 000 011121 122344555667
Q ss_pred CCcEEEEcccCCCcccccccceeccCCcCceeccCCCcccccCCcccEEecCccchHHHHHHHHhhccC--CCCcceEeh
Q 001713 653 GNHVRLSGQDVERGTFSHRHSVLHDQETGEQYCPLDHVMMNQDAEMFTVSNSSLSEFGVLGFELGYSME--NPNSLVMWE 730 (1021)
Q Consensus 653 ~~~Vrl~GeDv~rGtF~~RHavl~dq~t~~~y~pL~~L~~~~~~g~~rV~nspLSE~~vlGfe~G~a~~--g~~~lviwE 730 (1021)
.+++...--|....+- | ....+..+. +++-+.|.+|..|+|+++++++.|+|+. |.+|++-.=
T Consensus 361 ~p~iv~gsaDl~~s~~-----------t--~~~~~~~f~--~~~~p~Rfi~~GIaEq~mv~~AaGlA~~G~G~~P~~~tf 425 (654)
T PLN02790 361 LPGLIGGSADLASSNM-----------T--LLKDFGDFQ--KDTPEERNVRFGVREHGMGAICNGIALHSSGLIPYCATF 425 (654)
T ss_pred CCCeEEEECCCCcccc-----------c--ccccchhhh--hcCCCCCeEEeeechHHHHHHHHHHHhcCCCcEEEEEec
Confidence 7888766667643211 0 011123444 4433679999999999999999999995 699999555
Q ss_pred hhhhhhHhhHHHHHHHHHhhhhhhhcCccceEEEeCc-cC--CCCCcCCcCchhhHhhhccCCCCCcccCCCchhhhccc
Q 001713 731 AQFGDFANGAQVIFDQFVNSGESKWLRQSGLVVMLPH-GY--DGQGPEHSSARLERFLQMSDDNPYVIPEMDSTLRTQIQ 807 (1021)
Q Consensus 731 aqFgDF~n~Aq~~iDqfi~s~~~kw~~~~~lV~~lPh-G~--~G~GpeHSs~r~Er~Lql~~e~~~~~~~ipg~~~~~~~ 807 (1021)
++|.||+..+ |- .-..++.|+++..-| |. ...||+|..--.-. .+..+|
T Consensus 426 ~~F~~~~~~~---ir-------~~al~~lpV~~v~thdg~~~G~DG~THq~iedla----------~lR~iP-------- 477 (654)
T PLN02790 426 FVFTDYMRAA---MR-------LSALSEAGVIYVMTHDSIGLGEDGPTHQPIEHLA----------SLRAMP-------- 477 (654)
T ss_pred HHHHHHHHHH---HH-------HHHhcCCCeEEEEECCceeecCCCCCcccHHHHH----------HhcCCC--------
Confidence 5556655443 31 113456899999977 44 34699998863333 356888
Q ss_pred ccCeEEEecCCHHHHHHHHHHHHhcCCCCcEEEEeeccccCCccccCCcccccccCCCCCCCCCCCcceEeecCcccccc
Q 001713 808 ECNWQIVNVTTPANYFHVLRRQIHREFRKPLVVMSPKNLLRHKECKSNLSEFDDVQGHPGFDKQGTRFKRLIKDQNEHSD 887 (1021)
Q Consensus 808 ~~Nl~Vv~pstpad~fhlLrrqi~~~~~kPliv~~pK~Llr~~~~~s~~~e~~~~~~~~~~~~~~~~f~~vi~~~~~~~~ 887 (1021)
||.|+.|+++.++..+|+.++.. ...|+.|..|+.-...- .....+++.. |.+ ++.+.+
T Consensus 478 --nl~V~~PaD~~E~~~~l~~al~~-~~gP~~irl~R~~~~~~-~~~~~~~~~~-----------G~~--vl~~~~---- 536 (654)
T PLN02790 478 --NILMLRPADGNETAGAYKVAVTN-RKRPTVLALSRQKVPNL-PGTSIEGVEK-----------GGY--VISDNS---- 536 (654)
T ss_pred --CcEEEeCCCHHHHHHHHHHHHHc-CCCCEEEEecCCCCCCC-CCCccccccc-----------CcE--EEEeCC----
Confidence 59999999999999999999863 36899998886432110 0000111211 221 221100
Q ss_pred CCCCCeEEEEeechhHHHHHHHHHHc--CCCcEEEEEecccCCCCHHHHH---HHH-HcCCCceEEEEecCCcccchH
Q 001713 888 LEEGIRRLILCSGKVYYELYEERKKH--SASDIAICRVEQLCPFPYDLVQ---REL-KRYPNAEVVWSQEEPMNMGAY 959 (1021)
Q Consensus 888 ~~~g~~~~Iv~~Gk~~~~l~~a~~~~--~~~~v~ii~le~L~Pfp~~~i~---~~l-~k~~~~~~vwvqEe~~n~G~~ 959 (1021)
...+.|++||++|.++..++++++.| .++++.||++.++.|||.+.+. +.+ ++++.+ |.++ |...+|++
T Consensus 537 ~~~~~dv~iia~G~~v~~Al~Aa~~L~~~gi~~~VV~~~~ikpld~~~~~y~~~~~~~~~~~v--vtiE-~~~~~G~~ 611 (654)
T PLN02790 537 SGNKPDLILIGTGSELEIAAKAAKELRKEGKKVRVVSMVCWELFEEQSDEYKESVLPSSVTAR--VSVE-AGSTFGWE 611 (654)
T ss_pred CCCCCCEEEEEcCHHHHHHHHHHHHHHhcCCceEEEecCccchhhhhHHHHHHhhhccccceE--EEec-CccchhHH
Confidence 00127999999999999999999887 4789999999999999998754 556 454433 5664 45456643
No 37
>PTZ00089 transketolase; Provisional
Probab=100.00 E-value=3.8e-32 Score=329.90 Aligned_cols=450 Identities=12% Similarity=0.132 Sum_probs=294.7
Q ss_pred ccccCCcccccceeehHHHHhHHhcCCC-----CCCCcEEEEEeCccccCCccHHHHHHHhc---CCCCCCcccEEEEEE
Q 001713 360 VANPSHLEAVDPVVIGKTRAKQYYSNDM-----DRTKNMAVLIHGDGSFAGQGVVYETLHLS---ALPNYSIGGTIHIVV 431 (1021)
Q Consensus 360 ~~npShlg~~~PvA~G~A~A~q~~~~d~-----~~~~~v~v~~~GDgA~sGqG~v~EalnlA---~LP~y~~GGvI~Vv~ 431 (1021)
-...+|+|.++++|+|+|+|.++.+..- +..+..++|++|||+++ +|++||++|+| +||+ +|+||.
T Consensus 112 ~~~tG~lG~gls~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~v~GDG~l~-eG~~~EAl~~A~~~~L~n-----Li~i~d 185 (661)
T PTZ00089 112 EVTTGPLGQGIANAVGLAIAEKHLAAKFNRPGHPIFDNYVYVICGDGCLQ-EGVSQEALSLAGHLGLEK-----LIVLYD 185 (661)
T ss_pred ccCCcchhhhHHHHHHHHHHHHHHhhhccCccccCcCCEEEEEECccchh-hHHHHHHHHHHHHhCCCC-----EEEEEE
Confidence 3456889999999999999999865310 11247899999999999 99999999999 8997 899999
Q ss_pred cCCcccccCCCCCcccccHHHHHhhcCccEEEE-eCC-CHHHHHHHHHHHHHHHHccCCCEEEEEeeeccCCCCCCCCCC
Q 001713 432 NNQVAFTTDPMSGRSSQYCTDVAKALDAPIFHV-NGD-DMEAVAHVCELAAEWRQTFHSDVVVDLVCYRRFGHNEIDEPS 509 (1021)
Q Consensus 432 NNq~g~tT~~~~~rs~~~~sd~Aka~g~p~~~V-dG~-D~eAV~~a~~~A~e~rr~~~gPvlIe~vtYR~~GHne~Ddp~ 509 (1021)
||+++++++.... ....+.+++++|||.++.| ||+ |+++++.|++.|.+. .++|++|++.|+|.+||.+.|...
T Consensus 186 ~N~~~i~~~~~~~-~~~~~~~~f~a~G~~~i~v~dG~~D~~~l~~a~~~a~~~---~~~P~~I~~~T~kG~G~~~e~~~~ 261 (661)
T PTZ00089 186 DNKITIDGNTDLS-FTEDVEKKYEAYGWHVIEVDNGNTDFDGLRKAIEEAKKS---KGKPKLIIVKTTIGYGSSKAGTEK 261 (661)
T ss_pred CCCcccccCcccc-cCccHHHHHHhcCCcEEEeCCCCCCHHHHHHHHHHHHhc---CCCcEEEEEEeeecCCCCcCCCCC
Confidence 9999999998765 3577889999999999999 999 999999999988753 278999999999999998777653
Q ss_pred ----CCCHHHHHHHHhC--CCHH----------HHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHchhcCCCccchh
Q 001713 510 ----FTQPKMYKIIRSH--PSSL----------EIYQNKLLECQHVTQEDINKIQEKVNRILSEEFVASKDYVPNRRDWL 573 (1021)
Q Consensus 510 ----ytqp~ey~~i~~~--~dpi----------~~y~~~Li~~Gi~t~ee~~~i~~~~~~~l~~a~~~A~~~~p~~~~~~ 573 (1021)
...+++++..++. .||. ..|.. ..+.+ +...+++.+.+.+ ..+..|.....+
T Consensus 262 ~H~~~~~~~~~~~~~~~l~~~~~~~f~~~~~~~~~~~~-~~~~~-------~~~~~~w~~~~~~----~~~~~~~~~~~l 329 (661)
T PTZ00089 262 VHGAPLGDEDIAQVKELFGLDPEKKFHVSEEVRQFFEQ-HVEKK-------KENYEAWKKRFAK----YTAAFPKEAQAI 329 (661)
T ss_pred ccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHH-HHhhh-------HHHHHHHHHHHHH----HHHHCHHHHHHH
Confidence 3345666665431 1111 11111 00000 0111112222211 111011110001
Q ss_pred hhhccCCCCcccccccCCCCCChHHHHHHHHhhhcCCCCCCcccchHHHHHHHHHHhhcCCCcCHHHHHHHHHHHHHhcC
Q 001713 574 SAYWSGFKSPEQLSRIRNTGVKPEILKNVGKAITTLPENFKPHRGVKKVYELRAQMIETGEGIDWALGEALAFATLLVEG 653 (1021)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~t~v~~~~l~~i~~~~~~~P~~f~~h~~l~~~l~~R~~~~~~~~~idw~~AE~lA~~~ll~~~ 653 (1021)
.....+ .+|+++. ..+.+.. +.++.+.--.+-..++..+....
T Consensus 330 ~~~~~~----------------------------~~~~~~~--~~~~~~~-------~~~~~~a~R~~~g~~L~~la~~~ 372 (661)
T PTZ00089 330 ERRFKG----------------------------ELPPGWE--KKLPKYT-------TNDKAIATRKASENVLNPLFQIL 372 (661)
T ss_pred HHHhcc----------------------------CCchhhh--hhhhhhc-------ccCcchHHHHHHHHHHHHHHhhC
Confidence 100000 0111110 0000000 00000111112223445566677
Q ss_pred CcEEEEcccCCCcccccccceeccCCcCceeccCCCcccccCCcccEEecCccchHHHHHHHHhhcc-CCCCcceEehhh
Q 001713 654 NHVRLSGQDVERGTFSHRHSVLHDQETGEQYCPLDHVMMNQDAEMFTVSNSSLSEFGVLGFELGYSM-ENPNSLVMWEAQ 732 (1021)
Q Consensus 654 ~~Vrl~GeDv~rGtF~~RHavl~dq~t~~~y~pL~~L~~~~~~g~~rV~nspLSE~~vlGfe~G~a~-~g~~~lviwEaq 732 (1021)
+.+...--|+...|+.. .+. ...+. +.+...|.+|..|+|++.++++.|+|+ .|.+|++ +.
T Consensus 373 ~~~~~~saDl~~s~~~~-------~~~------~~~f~--~~~P~~rfi~~GIaEq~mv~~AaGlA~~~G~~P~~---~t 434 (661)
T PTZ00089 373 PELIGGSADLTPSNLTR-------PKE------ANDFT--KASPEGRYIRFGVREHAMCAIMNGIAAHGGFIPFG---AT 434 (661)
T ss_pred CCeEEEECCCCcccCcC-------Ccc------ccccc--ccCCCCCeeeeeecHHHHHHHHHHHHHcCCCeEEE---Ee
Confidence 88776666775433311 000 01233 334226999999999999999999999 8889999 99
Q ss_pred hhhhHhhHHHHHHHHHhhhhhhhcCccceEEEeCc---cCCCCCcCCcCchhhHhhhccCCCCCcccCCCchhhhccccc
Q 001713 733 FGDFANGAQVIFDQFVNSGESKWLRQSGLVVMLPH---GYDGQGPEHSSARLERFLQMSDDNPYVIPEMDSTLRTQIQEC 809 (1021)
Q Consensus 733 FgDF~n~Aq~~iDqfi~s~~~kw~~~~~lV~~lPh---G~~G~GpeHSs~r~Er~Lql~~e~~~~~~~ipg~~~~~~~~~ 809 (1021)
|+.|+..| +|| |.. -..++.|+++..-| |+...||+|..--.-. .+..+|
T Consensus 435 f~~Fl~Ra---~dq-ir~---~al~~lpV~~v~thdg~~~g~DG~THq~iedia----------~lR~iP---------- 487 (661)
T PTZ00089 435 FLNFYGYA---LGA-VRL---AALSHHPVIYVATHDSIGLGEDGPTHQPVETLA----------LLRATP---------- 487 (661)
T ss_pred hHHHHHHH---HHH-HHH---HHhcCCCeEEEEeCCceecCCCCCCcccHHHHH----------HHhcCC----------
Confidence 99999999 888 433 24567899999855 4445799999873333 356888
Q ss_pred CeEEEecCCHHHHHHHHHHHHhcCCCCcEEEEeeccccCCccccCCcccccccCCCCCCCCCCCcceEeecCccccccCC
Q 001713 810 NWQIVNVTTPANYFHVLRRQIHREFRKPLVVMSPKNLLRHKECKSNLSEFDDVQGHPGFDKQGTRFKRLIKDQNEHSDLE 889 (1021)
Q Consensus 810 Nl~Vv~pstpad~fhlLrrqi~~~~~kPliv~~pK~Llr~~~~~s~~~e~~~~~~~~~~~~~~~~f~~vi~~~~~~~~~~ 889 (1021)
||.|+.|+++.++..+|+.++.. .+.|++|..|+.-.. .+.+-. ..| + .+.+.+.+
T Consensus 488 n~~V~~PaD~~E~~~~l~~al~~-~~gP~~irl~R~~~~------~~~~~~------------~~~--~---~~g~~vl~ 543 (661)
T PTZ00089 488 NLLVIRPADGTETSGAYALALAN-AKTPTILCLSRQNTP------PLPGSS------------IEG--V---LKGAYIVV 543 (661)
T ss_pred CcEEEecCCHHHHHHHHHHHHHc-CCCCEEEEecCCCCC------CcCCCc------------ccc--c---cCceEEEe
Confidence 59999999999999999999853 368999987754211 110000 000 0 01111223
Q ss_pred C---CCeEEEEeechhHHHHHHHHHHcC-CCcEEEEEecccCCCCHHHHHHH
Q 001713 890 E---GIRRLILCSGKVYYELYEERKKHS-ASDIAICRVEQLCPFPYDLVQRE 937 (1021)
Q Consensus 890 ~---g~~~~Iv~~Gk~~~~l~~a~~~~~-~~~v~ii~le~L~Pfp~~~i~~~ 937 (1021)
+ +.|++||++|.++..++++++.|. ++++.||++.++.|||.+.+...
T Consensus 544 ~~~~~~dv~iia~G~~v~~Al~Aa~~L~~Gi~~~Vv~~~~ikp~d~~~~~~~ 595 (661)
T PTZ00089 544 DFTNSPQLILVASGSEVSLCVEAAKALSKELNVRVVSMPCWELFDQQSEEYQ 595 (661)
T ss_pred ccCCCCCEEEEeeCHHHHHHHHHHHHHhcCCCeEEEeCCCccHHHHHHHHHH
Confidence 3 379999999999999999998763 78999999999999999976533
No 38
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=100.00 E-value=3.9e-31 Score=305.75 Aligned_cols=435 Identities=16% Similarity=0.202 Sum_probs=308.5
Q ss_pred cCCcccccceeehHHHHhHHhcCCCCCCCcEEEEEeCccccCCccHHHHHHHhcC-CCCCCcccEEEEEEcCCcccccCC
Q 001713 363 PSHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLSA-LPNYSIGGTIHIVVNNQVAFTTDP 441 (1021)
Q Consensus 363 pShlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDgA~sGqG~v~EalnlA~-LP~y~~GGvI~Vv~NNq~g~tT~~ 441 (1021)
.+|-++.++.|+|+|.|+...+.+ .-+|+++||||++ -|..+|+||-+. .+... +|.|+.+|+.+|+.+.
T Consensus 114 ~GHsSTSiSaalG~A~A~~~~g~~-----~~vvaVIGDGAlt-~GmA~EALN~ag~~~~~~---~iVILNDNeMSIs~nv 184 (627)
T COG1154 114 VGHSSTSISAALGMAKARDLKGED-----RNVVAVIGDGALT-GGMAFEALNNAGADLKSN---LIVILNDNEMSISPNV 184 (627)
T ss_pred cCchHHHHHHHhhHHHHHHhcCCC-----CcEEEEECCcccc-chHHHHHHhhhhhccCCC---EEEEEeCCCcccCCCc
Confidence 378889999999999999987765 7899999999999 899999999993 31111 9999999999998653
Q ss_pred CC-------Ccccc-------c----------------------------HHHHHhhcCccEE-EEeCCCHHHHHHHHHH
Q 001713 442 MS-------GRSSQ-------Y----------------------------CTDVAKALDAPIF-HVNGDDMEAVAHVCEL 478 (1021)
Q Consensus 442 ~~-------~rs~~-------~----------------------------~sd~Aka~g~p~~-~VdG~D~eAV~~a~~~ 478 (1021)
-. -++++ . ..-+.+.+|+..+ -|||+|++++..+.+.
T Consensus 185 Gal~~~L~~l~~~~~y~~~~~~~kk~l~~~~~~~~~~~~r~e~~~K~l~~~~~lFeelGf~YiGPiDGHni~~Li~~Lk~ 264 (627)
T COG1154 185 GALSKHLARLRSGPFYQSLREGGKKVLSKVGPPLKRFAKRAEESIKGLLVPGTLFEELGFNYIGPIDGHNLEELIPTLKN 264 (627)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHHHHhhchHHHHHHHHHHHhhhcccCchhhHHHhCCeeECCcCCCCHHHHHHHHHH
Confidence 21 11111 0 0013455676655 4799999999988777
Q ss_pred HHHHHHccCCCEEEEEeeeccCCCCCCCCCCCCCHHHHHHHHhCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHH
Q 001713 479 AAEWRQTFHSDVVVDLVCYRRFGHNEIDEPSFTQPKMYKIIRSHPSSLEIYQNKLLECQHVTQEDINKIQEKVNRILSEE 558 (1021)
Q Consensus 479 A~e~rr~~~gPvlIe~vtYR~~GHne~Ddp~ytqp~ey~~i~~~~dpi~~y~~~Li~~Gi~t~ee~~~i~~~~~~~l~~a 558 (1021)
+. +.++|+||+++|-.-.|= .|.| .||.. |- |+
T Consensus 265 ~k----d~~gPvllHv~T~KGKGY---------~pAE-------~d~~~-~H------~v-------------------- 297 (627)
T COG1154 265 AK----DLKGPVLLHVVTKKGKGY---------KPAE-------EDPIK-YH------GV-------------------- 297 (627)
T ss_pred Hh----cCCCCEEEEEEecCCCCC---------Chhh-------cChhh-cc------CC--------------------
Confidence 65 579999999999766652 2222 12221 10 00
Q ss_pred HHHchhcCCCccchhhhhccCCCCcccccccCCCCCChHHHHHHHHhhhcCCCCCCcccchHHHHHHHHHHhhcCCCcCH
Q 001713 559 FVASKDYVPNRRDWLSAYWSGFKSPEQLSRIRNTGVKPEILKNVGKAITTLPENFKPHRGVKKVYELRAQMIETGEGIDW 638 (1021)
Q Consensus 559 ~~~A~~~~p~~~~~~~~~~~~~~~~~~~~~~~~t~v~~~~l~~i~~~~~~~P~~f~~h~~l~~~l~~R~~~~~~~~~idw 638 (1021)
.| + .+ ..|+.... + .....+|
T Consensus 298 -------~~---------f----~~------~~tg~~~~----------~-----------------------~~~~~sy 318 (627)
T COG1154 298 -------GP---------F----DP------IETGQSKK----------S-----------------------KPSAPSY 318 (627)
T ss_pred -------CC---------C----Cc------cccCccCC----------C-----------------------CCCCCCH
Confidence 00 0 00 00000000 0 0000111
Q ss_pred HHHHHHHHHHHHhcCCcEEEEcccCCCcccccccceeccCCcCceeccCCCcccccCCcccEEecCccchHHHHHHHHhh
Q 001713 639 ALGEALAFATLLVEGNHVRLSGQDVERGTFSHRHSVLHDQETGEQYCPLDHVMMNQDAEMFTVSNSSLSEFGVLGFELGY 718 (1021)
Q Consensus 639 ~~AE~lA~~~ll~~~~~Vrl~GeDv~rGtF~~RHavl~dq~t~~~y~pL~~L~~~~~~g~~rV~nspLSE~~vlGfe~G~ 718 (1021)
...-.-++-.+.++|++|.-.=--...| | .|..++ ++| |.|.+|..|+|++.+.|+.|+
T Consensus 319 s~vf~~~L~~~a~~d~~ivaITaAM~~g-------------t-----GL~~F~--~~f-P~R~fDVGIAEQHAVT~AAGl 377 (627)
T COG1154 319 TKVFGDTLCELAAKDEKIVAITAAMPEG-------------T-----GLVKFS--KKF-PDRFFDVGIAEQHAVTFAAGL 377 (627)
T ss_pred HHHHHHHHHHHHhhCCCeEEEecCCCCC-------------C-----ChHHHH--HhC-chhheehhhhHHHHHHHHHHH
Confidence 1111122223344555554332211112 1 223445 556 799999999999999999999
Q ss_pred ccCCCCcceEehhhhhhhHhhHHHHHHHHHhhhhhhhcCccceEEEeCc-cCC-CCCcCCcCchhhHhhhccCCCCCccc
Q 001713 719 SMENPNSLVMWEAQFGDFANGAQVIFDQFVNSGESKWLRQSGLVVMLPH-GYD-GQGPEHSSARLERFLQMSDDNPYVIP 796 (1021)
Q Consensus 719 a~~g~~~lviwEaqFgDF~n~Aq~~iDqfi~s~~~kw~~~~~lV~~lPh-G~~-G~GpeHSs~r~Er~Lql~~e~~~~~~ 796 (1021)
|+.|.+|+| +.|++|+++| +||+++ +-..++.|+++.+.. |.. ..|++|.....-.| +.
T Consensus 378 A~~G~kPvv---aIYSTFLQRA---YDQliH---DvaiqnLPV~faIDRAGivG~DG~TH~G~fDls~----------l~ 438 (627)
T COG1154 378 AAEGMKPVV---AIYSTFLQRA---YDQLIH---DVAIQNLPVTFAIDRAGIVGADGPTHQGLFDLSF----------LR 438 (627)
T ss_pred HhCCCCCEE---EEecHHHHHH---HHHHHH---HHHhccCCeEEEEecCcccCCCCCccccHHHHHH----------Hh
Confidence 999999999 9999999999 999998 477889999999997 665 57999999977776 45
Q ss_pred CCCchhhhcccccCeEEEecCCHHHHHHHHHHHHhcCCCCcEEEEeeccccCCccccCCcccccccCCCCCCCCCCCcce
Q 001713 797 EMDSTLRTQIQECNWQIVNVTTPANYFHVLRRQIHREFRKPLVVMSPKNLLRHKECKSNLSEFDDVQGHPGFDKQGTRFK 876 (1021)
Q Consensus 797 ~ipg~~~~~~~~~Nl~Vv~pstpad~fhlLrrqi~~~~~kPliv~~pK~Llr~~~~~s~~~e~~~~~~~~~~~~~~~~f~ 876 (1021)
.|| ||+|++|++...+++||+.++.- ...|+.|..|+.---.. ....+ +.
T Consensus 439 ~iP----------nmvi~aP~de~el~~ml~ta~~~-~~gP~AiRyPrg~~~~~---~~~~~----------------~~ 488 (627)
T COG1154 439 CIP----------NMVIMAPRDEEELRQMLYTALAQ-DDGPVAIRYPRGNGVGV---ILTPE----------------LE 488 (627)
T ss_pred cCC----------CcEEecCCCHHHHHHHHHHHHhc-CCCCeEEEecCCCCCCC---Ccccc----------------cc
Confidence 888 59999999999999999999985 23699998886531110 00001 11
Q ss_pred EeecCccccccCCCCCeEEEEeechhHHHHHHHHHHc--CCCcEEEEEecccCCCCHHHHHHHHHcCCCceEEEEecCCc
Q 001713 877 RLIKDQNEHSDLEEGIRRLILCSGKVYYELYEERKKH--SASDIAICRVEQLCPFPYDLVQRELKRYPNAEVVWSQEEPM 954 (1021)
Q Consensus 877 ~vi~~~~~~~~~~~g~~~~Iv~~Gk~~~~l~~a~~~~--~~~~v~ii~le~L~Pfp~~~i~~~l~k~~~~~~vwvqEe~~ 954 (1021)
+ .+.|+..+.++|.|++|||.|.++..++++++++ .++++.|||.|.++|+|.+.|.+..+++..+ |.++|...
T Consensus 489 ~--~~~Gk~~i~~~G~~vail~~G~~~~~al~vae~L~~~Gi~~TVvd~rfvkPlD~~ll~~La~~h~~~--vtlEe~~~ 564 (627)
T COG1154 489 P--LEIGKGELLKEGEKVAILAFGTMLPEALKVAEKLNAYGISVTVVDPRFVKPLDEALLLELAKSHDLV--VTLEENVV 564 (627)
T ss_pred c--ccccceEEEecCCcEEEEecchhhHHHHHHHHHHHhcCCCcEEEcCeecCCCCHHHHHHHHhhcCeE--EEEecCcc
Confidence 1 2345556778899999999999999999999987 4799999999999999999998888888766 89999999
Q ss_pred ccchHhhHHHHHHHHHHhhccCCCCcEEEEcCCCCcCC
Q 001713 955 NMGAYTYIAPRLCTAMKAVDRGTMEDIKYVGRAPSAAS 992 (1021)
Q Consensus 955 n~G~~~~v~~~i~~~~~~l~~~~~~~~~~vgr~~~~~p 992 (1021)
.+|+++.|+..+.+. . ...++...|-|+.=.+
T Consensus 565 ~GG~Gs~v~efl~~~--~----~~~~v~~lglpd~fi~ 596 (627)
T COG1154 565 DGGFGSAVLEFLAAH--G----ILVPVLNLGLPDEFID 596 (627)
T ss_pred cccHHHHHHHHHHhc--C----CCCceEEecCChHhhc
Confidence 999999999888763 1 1157888888875444
No 39
>PRK12754 transketolase; Reviewed
Probab=100.00 E-value=1e-30 Score=315.59 Aligned_cols=448 Identities=13% Similarity=0.115 Sum_probs=288.1
Q ss_pred ccccCCcccccceeehHHHHhHHhcCC--CCC---CCcEEEEEeCccccCCccHHHHHHHhc---CCCCCCcccEEEEEE
Q 001713 360 VANPSHLEAVDPVVIGKTRAKQYYSND--MDR---TKNMAVLIHGDGSFAGQGVVYETLHLS---ALPNYSIGGTIHIVV 431 (1021)
Q Consensus 360 ~~npShlg~~~PvA~G~A~A~q~~~~d--~~~---~~~v~v~~~GDgA~sGqG~v~EalnlA---~LP~y~~GGvI~Vv~ 431 (1021)
-...++||.++++|+|+|+|.++.+.. ..+ .+..++|++|||+++ ||++||++|+| +||+ +|+||.
T Consensus 110 e~stG~LGqGl~~AvG~AlA~k~~~~~~~~~~~~~~~~~v~~~~GDGel~-EG~~~EA~~~A~~~kL~n-----Li~ivD 183 (663)
T PRK12754 110 ETTTGPLGQGIANAVGMAIAEKTLAAQFNRPGHDIVDHYTYAFMGDGCMM-EGISHEVCSLAGTLKLGK-----LIAFYD 183 (663)
T ss_pred cccCCcccchHHHHHHHHHHHHHhhhccCcccccccCCEEEEEECcchhh-chHHHHHHHHHHHhCCCC-----EEEEEE
Confidence 344578999999999999999987531 011 247899999999999 99999999999 9997 899999
Q ss_pred cCCcccccCCCCCcccccHHHHHhhcCccEEE-EeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeeeccCCCCC-CCCC-
Q 001713 432 NNQVAFTTDPMSGRSSQYCTDVAKALDAPIFH-VNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYRRFGHNE-IDEP- 508 (1021)
Q Consensus 432 NNq~g~tT~~~~~rs~~~~sd~Aka~g~p~~~-VdG~D~eAV~~a~~~A~e~rr~~~gPvlIe~vtYR~~GHne-~Ddp- 508 (1021)
||+++++++.+... ..++.+++++|||++++ |||+|++++.+|++.|.+ ..++|++|++.|+|.+|... .+.+
T Consensus 184 ~N~~~idg~~~~~~-~~~~~~r~~a~Gw~vi~vvDG~D~~ai~~A~~~a~~---~~~~Pt~I~~~T~~g~G~~~~e~~~~ 259 (663)
T PRK12754 184 DNGISIDGHVEGWF-TDDTAMRFEAYGWHVIRGIDGHDADSIKRAVEEARA---VTDKPSLLMCKTIIGFGSPNKAGTHD 259 (663)
T ss_pred cCCCccCcchhhcc-CccHHHHHHhcCCeEEeeECCCCHHHHHHHHHHHHh---cCCCCEEEEEEeeeccCccccCCCcc
Confidence 99999999988775 57899999999999999 899999999988887763 35889999999999999862 2322
Q ss_pred CC---CCHHHHHHHHhCC-----------CHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHchhcCCCccchhh
Q 001713 509 SF---TQPKMYKIIRSHP-----------SSLEIYQNKLLECQHVTQEDINKIQEKVNRILSEEFVASKDYVPNRRDWLS 574 (1021)
Q Consensus 509 ~y---tqp~ey~~i~~~~-----------dpi~~y~~~Li~~Gi~t~ee~~~i~~~~~~~l~~a~~~A~~~~p~~~~~~~ 574 (1021)
.. -.+++++..++.- ++...|++ .++|- +..+++.+.+++ .++..|.....+.
T Consensus 260 ~Hg~~l~~~~~~~~~~~l~~~~~~F~v~~~v~~~~~~--~~~~~-------~~~~~w~~~~~~----~~~~~p~~~~~~~ 326 (663)
T PRK12754 260 SHGAPLGDAEIALTREQLGWKYAPFEIPSEIYAQWDA--KEAGQ-------AKESAWNEKFAA----YAKAYPQEAAEFT 326 (663)
T ss_pred ccCCCCCHHHHHHHHHhcCCCCCCCCCCHHHHHHHHH--hhhch-------HHHHHHHHHHHH----HHHHCHHHHHHHH
Confidence 21 2345555443211 11122211 11221 111111111111 1111111111111
Q ss_pred hhccCCCCcccccccCCCCCChHHHHHHHHhhhcCCCCCCcccchHHHHHHHHHHhhcCCCcCHHHHHHHHHHHHHhcCC
Q 001713 575 AYWSGFKSPEQLSRIRNTGVKPEILKNVGKAITTLPENFKPHRGVKKVYELRAQMIETGEGIDWALGEALAFATLLVEGN 654 (1021)
Q Consensus 575 ~~~~~~~~~~~~~~~~~t~v~~~~l~~i~~~~~~~P~~f~~h~~l~~~l~~R~~~~~~~~~idw~~AE~lA~~~ll~~~~ 654 (1021)
..+.+ ..++.+.. .+......+..-+. -+..|. +-..++..|...++
T Consensus 327 ~~~~~---------~~p~~~~~-~~~~~~~~~~~~~~----------~~atR~-------------~~~~~L~~la~~~~ 373 (663)
T PRK12754 327 RRMKG---------EMPADFDA-KAKEFIAKLQANPA----------KIASRK-------------ASQNAIEAFGPLLP 373 (663)
T ss_pred HHhcC---------CCchhHHH-HHHHHhhhhccccc----------chHHHH-------------HHHHHHHHHHhhCC
Confidence 11110 00000000 00000000000000 011221 22335566677889
Q ss_pred cEEEEcccCCCcccccccceeccCCcCceeccCCCcccccCCcccEEecCccchHHHHHHHHhhcc-CCCCcceEehhhh
Q 001713 655 HVRLSGQDVERGTFSHRHSVLHDQETGEQYCPLDHVMMNQDAEMFTVSNSSLSEFGVLGFELGYSM-ENPNSLVMWEAQF 733 (1021)
Q Consensus 655 ~Vrl~GeDv~rGtF~~RHavl~dq~t~~~y~pL~~L~~~~~~g~~rV~nspLSE~~vlGfe~G~a~-~g~~~lviwEaqF 733 (1021)
+|....-|....|... +.-+..+. +++ +.|.+|..|+|++++|++.|+|+ .|.+|++ .-|
T Consensus 374 ~lv~~sADl~~s~~~~-------------~~~~~~f~--~~~-p~r~i~~GIaE~~Mv~iaaGlA~~~G~~Pf~---~tf 434 (663)
T PRK12754 374 EFLGGSADLAPSNLTL-------------WSGSKAIN--EDA-AGNYIHYGVREFGMTAIANGIALHGGFLPYT---STF 434 (663)
T ss_pred CEEEEeCCcccccCcc-------------cccccccc--ccC-CCCeEeeccchhhHHHHHhhHHhcCCCeEEE---Eee
Confidence 9988888875432211 00012343 344 56999999999999999999999 6889999 778
Q ss_pred hhhHhhHHHHHHHHHhhhhhhhcCccceEEEeCc-cC--CCCCcCCcCchhhHhhhccCCCCCcccCCCchhhhcccccC
Q 001713 734 GDFANGAQVIFDQFVNSGESKWLRQSGLVVMLPH-GY--DGQGPEHSSARLERFLQMSDDNPYVIPEMDSTLRTQIQECN 810 (1021)
Q Consensus 734 gDF~n~Aq~~iDqfi~s~~~kw~~~~~lV~~lPh-G~--~G~GpeHSs~r~Er~Lql~~e~~~~~~~ipg~~~~~~~~~N 810 (1021)
.-|+..+ .||+-.+ ...+.|+++..-| |+ ...||+|..- |- | ..+..+| |
T Consensus 435 ~~F~~r~---~~qir~~----a~~~l~V~~v~th~gi~~G~DG~THq~i--Ed---l-----a~lR~iP----------n 487 (663)
T PRK12754 435 LMFVEYA---RNAVRMA----ALMKQRQVMVYTHDSIGLGEDGPTHQPV--EQ---V-----ASLRVTP----------N 487 (663)
T ss_pred HHHHHHH---HHHHHHH----HHcCCCeEEEEECCccccCCCCCCcccH--HH---H-----HHHhcCC----------C
Confidence 8887777 6665432 2345788887777 44 3469999875 32 1 2466888 5
Q ss_pred eEEEecCCHHHHHHHHHHHHhcCCCCcEEEEeeccccCCccccCC-cccccccCCCCCCCCCCCcceEeecCccccccCC
Q 001713 811 WQIVNVTTPANYFHVLRRQIHREFRKPLVVMSPKNLLRHKECKSN-LSEFDDVQGHPGFDKQGTRFKRLIKDQNEHSDLE 889 (1021)
Q Consensus 811 l~Vv~pstpad~fhlLrrqi~~~~~kPliv~~pK~Llr~~~~~s~-~~e~~~~~~~~~~~~~~~~f~~vi~~~~~~~~~~ 889 (1021)
|.|+.|+++.+...+++.++.. ...|+.|..++.-+........ ..++. + |. .+ .+
T Consensus 488 ~~V~~PaD~~E~~~~~~~a~~~-~~gP~yirl~R~~~p~~~~~~~~~~~~~---------~--G~--~v---------l~ 544 (663)
T PRK12754 488 MSTWRPCDQVESAVAWKYGVER-QDGPTALILSRQNLAQQERTEEQLANIA---------R--GG--YV---------LK 544 (663)
T ss_pred cEEecCCCHHHHHHHHHHHHhC-CCCCEEEEeCCCCCCCCCCccchhhhcc---------c--Cc--EE---------EE
Confidence 9999999999999999999874 2579998766532211000000 00111 1 21 11 22
Q ss_pred CC---CeEEEEeechhHHHHHHHHHHc--CCCcEEEEEecccCCCCHH
Q 001713 890 EG---IRRLILCSGKVYYELYEERKKH--SASDIAICRVEQLCPFPYD 932 (1021)
Q Consensus 890 ~g---~~~~Iv~~Gk~~~~l~~a~~~~--~~~~v~ii~le~L~Pfp~~ 932 (1021)
++ .|++|+++|.++..++++++.| .++++.||++-++.|||.+
T Consensus 545 ~~~~~~dv~iiatGs~v~~Al~Aa~~L~~~Gi~~~Vvs~~s~kp~d~q 592 (663)
T PRK12754 545 DCAGQPELIFIATGSEVELAVAAYEKLTAEGVKARVVSMPSTDAFDKQ 592 (663)
T ss_pred ecCCCCCEEEEEECHHHHHHHHHHHHHHhhCCCcEEEEcCccCcCCCC
Confidence 22 4899999999999999999887 4799999999999999997
No 40
>TIGR03186 AKGDH_not_PDH alpha-ketoglutarate dehydrogenase. Several bacterial species have a paralog to homodimeric form of the pyruvate dehydrogenase E1 component (see model TIGR00759), often encoded next to L-methionine gamma-lyase gene (mdeA). The member from a strain of Pseudomonas putida was shown to act on alpha-ketobutyrate, which is produced by MdeA.This model serves as an exception model to TIGR00759, as other proteins hitting TIGR00759 should be identified as the pyruvate dehydrogenase E1 component.
Probab=99.95 E-value=1.4e-25 Score=274.33 Aligned_cols=503 Identities=14% Similarity=0.151 Sum_probs=312.9
Q ss_pred cCCcccccceeehHHHHhHHhcCC--CCCCCcEEEEEeCccccCCccHHHHHHHhc---CCCCCCcccEEEEEEcCCccc
Q 001713 363 PSHLEAVDPVVIGKTRAKQYYSND--MDRTKNMAVLIHGDGSFAGQGVVYETLHLS---ALPNYSIGGTIHIVVNNQVAF 437 (1021)
Q Consensus 363 pShlg~~~PvA~G~A~A~q~~~~d--~~~~~~v~v~~~GDgA~sGqG~v~EalnlA---~LP~y~~GGvI~Vv~NNq~g~ 437 (1021)
.+.||.++++|+|+|+|.++.... .+..+.-++|++|||.+. ||.+||++.+| +|.+ +|+||.+|.+.+
T Consensus 188 TGSLGqGl~~AvG~Ala~kyl~~r~~~~~~~~rVy~llGDGEl~-EG~~wEA~~~Aa~~kLdN-----Li~IvD~N~~ql 261 (889)
T TIGR03186 188 TGSMGIGPINAIYQARFMRYLQNRGLARTEGRKVWGFFGDGEMD-EPESIGALSLAARERLDN-----LVFVINCNLQRL 261 (889)
T ss_pred CCCchHHHHHHHHHHHHHHHHhhccccCCCCceEEEEEcchhhc-cHHHHHHHHHHHHhCCCC-----EEEEEeCCCCcc
Confidence 455999999999999998854421 122346799999999999 99999999999 9998 999999999999
Q ss_pred ccCCCCCcc-cccHHHHHhhcCccEEEE----------------------------------------------------
Q 001713 438 TTDPMSGRS-SQYCTDVAKALDAPIFHV---------------------------------------------------- 464 (1021)
Q Consensus 438 tT~~~~~rs-~~~~sd~Aka~g~p~~~V---------------------------------------------------- 464 (1021)
..+.+..-. ...+.++.+++||.++.|
T Consensus 262 DG~t~~~~~~~e~l~~kf~a~GW~vi~v~wG~~wd~l~~~d~~~~L~~~~~~~~dg~yq~~~~~~ga~~R~~ff~~~~~~ 341 (889)
T TIGR03186 262 DGPVRGNGRIIDELESQFAGAGWNVIKVLWGSDWDALFARDATGALARAFAHTVDGQFQTFSANDGAYNRARFFGQDPAL 341 (889)
T ss_pred CCccccccccchHHHHHHHhCCCEEEEEeecCchHHhhccccchHHHHHHHhcccHHHHHHhhcchHHHHHHhcCccHHH
Confidence 988775322 467899999999999999
Q ss_pred -----------------eCCCHHHHHHHHHHHHHHHHccCCCEEEEEeeeccCCCCCCCCCCCCCHHHHHHHHhCCCHHH
Q 001713 465 -----------------NGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYRRFGHNEIDEPSFTQPKMYKIIRSHPSSLE 527 (1021)
Q Consensus 465 -----------------dG~D~eAV~~a~~~A~e~rr~~~gPvlIe~vtYR~~GHne~Ddp~ytqp~ey~~i~~~~dpi~ 527 (1021)
+|+|+.+|++|.+.|++ ..++|++|.+.|..-+|-+..-+..- .+ |.
T Consensus 342 ~~lv~~~sD~~i~~l~rgGHD~~~i~~A~~~A~~---~~~~PTvIla~TvkG~G~~~~g~~~~-------~~--H~---- 405 (889)
T TIGR03186 342 AALVAHLSDEDIDRLRRGGHDARKLYAAYDRAVR---HEGRPTVILAKTMKGFGMGAIGQGRM-------TT--HQ---- 405 (889)
T ss_pred HHHhhcccHHhhhhhcCCCCCHHHHHHHHHHHHh---CCCCCEEEEEEeeecCCCCcccCccc-------cc--cC----
Confidence 69999999999999985 33689999999998888543322110 00 00
Q ss_pred HHHHHHHHccCCCHHHHHHHHHHHHHHH-HHHHHHchhcCCCccchhhhhccCCCCcccccccCCCCCChHHHHHHHH--
Q 001713 528 IYQNKLLECQHVTQEDINKIQEKVNRIL-SEEFVASKDYVPNRRDWLSAYWSGFKSPEQLSRIRNTGVKPEILKNVGK-- 604 (1021)
Q Consensus 528 ~y~~~Li~~Gi~t~ee~~~i~~~~~~~l-~~a~~~A~~~~p~~~~~~~~~~~~~~~~~~~~~~~~t~v~~~~l~~i~~-- 604 (1021)
.+.++.+++++.++.+.--+ ++.++ |.+|..|.+ +...++.+.+
T Consensus 406 --------~~~l~~e~~~~~r~~~g~~~~de~~~----------------~~~~~~~~~---------~s~~~~~l~~~r 452 (889)
T TIGR03186 406 --------QKKLDVEALLAFRDRFRLPLSDADVE----------------QLKFYKPDE---------DSAEMRYLHARR 452 (889)
T ss_pred --------cCcCCHHHHHHHHHHcCCCCChHHhh----------------cccccCCCC---------CCHHHHHHHHHH
Confidence 02234444444433332111 00000 111111100 0000111111
Q ss_pred -hhh-cCCCCCC------cccchHHHHHHHHHHhhcCCCcCHHHHHHHHHHHH----Hhc---CCcEEEEcccCCC----
Q 001713 605 -AIT-TLPENFK------PHRGVKKVYELRAQMIETGEGIDWALGEALAFATL----LVE---GNHVRLSGQDVER---- 665 (1021)
Q Consensus 605 -~~~-~~P~~f~------~h~~l~~~l~~R~~~~~~~~~idw~~AE~lA~~~l----l~~---~~~Vrl~GeDv~r---- 665 (1021)
++. .+|..-. ..|.+. .+..-.+- ..++.+ +=.+||+.+ +.. +.+|+-.--|+.|
T Consensus 453 ~~l~g~~p~r~~~~~~~~~~p~~~-~~~~~~~~-~~~~~~----sT~~Af~r~l~~L~~~~~~~~riV~i~pD~a~t~gm 526 (889)
T TIGR03186 453 AALGGYLPRRRTAATHALAVPALP-SWGRFALD-AEGKEM----STTMAIVRMLGALLKDAELGPRIVPIVADEARTFGM 526 (889)
T ss_pred HHcCCCCCCCCCCCccccCCCCcc-hhhhhhcc-CCCCcc----cHHHHHHHHHHHHHhCccccCCEEEeCCcccccCCc
Confidence 010 0010000 011100 00000000 011222 234455555 322 5567878788864
Q ss_pred -------cccccccceeccCCcCceeccCCC--cccccCCcccEEecCccchHHHHH--HHHhhccC----CCCcceEeh
Q 001713 666 -------GTFSHRHSVLHDQETGEQYCPLDH--VMMNQDAEMFTVSNSSLSEFGVLG--FELGYSME----NPNSLVMWE 730 (1021)
Q Consensus 666 -------GtF~~RHavl~dq~t~~~y~pL~~--L~~~~~~g~~rV~nspLSE~~vlG--fe~G~a~~----g~~~lviwE 730 (1021)
|.|+. .|..|.|-+. +..=.+.-+.|++|..|+|++.++ .+.|.|++ +..|++++=
T Consensus 527 ~~~f~~~gi~~~---------~gq~y~~~d~~~~~~y~e~~p~R~ie~GIAEqnmv~~~iAAGlA~a~~G~g~iPf~~ty 597 (889)
T TIGR03186 527 ANLFRQVGIYSP---------LGQRYEPEDLGSMLYYREDTDGQILEEGISEAGAISSWIAAATSYSVHDLPMLPFYIYY 597 (889)
T ss_pred hhhhccccccCc---------ccccCCccchHHHHHHhhcCCCcEEEechhhHHHHHHHHHHHHhhhhcCCCceEEEEeh
Confidence 66776 6778888652 110023348999999999999999 88897777 679999554
Q ss_pred hhhhhhHhhHHHHHHHHHhhhhhhhcCccceEEEeCccC-C--CCCcCCcCchhhHhhhccCCCCCcccCCCchhhhccc
Q 001713 731 AQFGDFANGAQVIFDQFVNSGESKWLRQSGLVVMLPHGY-D--GQGPEHSSARLERFLQMSDDNPYVIPEMDSTLRTQIQ 807 (1021)
Q Consensus 731 aqFgDF~n~Aq~~iDqfi~s~~~kw~~~~~lV~~lPhG~-~--G~GpeHSs~r~Er~Lql~~e~~~~~~~ipg~~~~~~~ 807 (1021)
++|+ ...+ .||+-.++ ..+.....+-..+|. . +.|++|.+. |... .+..+|
T Consensus 598 a~F~--~~Ra---~Dqir~a~---~~~a~v~lvG~~aG~tTlg~eG~tHq~~--eDia--------l~r~iP-------- 651 (889)
T TIGR03186 598 SMFG--FQRI---GDLIWAAA---DQRARGFLIGATSGKTTLGGEGLQHQDG--TSHL--------AASTVP-------- 651 (889)
T ss_pred HHhH--hhhH---HHHHHHHh---hcCCCcEEEEECCCccCCCCCcccccch--HhHH--------HHhhCC--------
Confidence 4443 2566 88877652 222334444455677 2 569999876 4332 255788
Q ss_pred ccCeEEEecCCHHHHHHHHHHHHhc----CCCCcEEEEeeccccCCccccCCcccccccCCCCCCCCCCCcceEeecCcc
Q 001713 808 ECNWQIVNVTTPANYFHVLRRQIHR----EFRKPLVVMSPKNLLRHKECKSNLSEFDDVQGHPGFDKQGTRFKRLIKDQN 883 (1021)
Q Consensus 808 ~~Nl~Vv~pstpad~fhlLrrqi~~----~~~kPliv~~pK~Llr~~~~~s~~~e~~~~~~~~~~~~~~~~f~~vi~~~~ 883 (1021)
||.|+.|+.+.+...+++..++| +.+.|+-+-..+.-+.+|.- +-++|... ..|..+ +- .++.+.
T Consensus 652 --n~tv~~PaDa~E~a~iv~~~~~rm~~~~~~gp~YlRl~r~~~~~p~~--~~~~~~~~--~~gi~k--g~--y~l~~~- 720 (889)
T TIGR03186 652 --NCRAWDPAFAYEVAVIVDEGMREMLERQRDEFYYLTVTNENYAQPSL--PEDRLDAV--RRGILK--GM--YPLDPA- 720 (889)
T ss_pred --CCEEEeCCCHHHHHHHHHHHHHHHHhcCCCceEEEEeCCCCCCCCCc--CCCcccch--hcchhh--ee--eEeecc-
Confidence 59999999999999999876652 23568888654333222210 10111100 000000 00 011100
Q ss_pred ccccCCCCCeEEEEeechhHHHHHHHHHHc--C-CCcEEEEEecccCCCCHHHHHHHHHcCCCceEEEEecC---Ccccc
Q 001713 884 EHSDLEEGIRRLILCSGKVYYELYEERKKH--S-ASDIAICRVEQLCPFPYDLVQRELKRYPNAEVVWSQEE---PMNMG 957 (1021)
Q Consensus 884 ~~~~~~~g~~~~Iv~~Gk~~~~l~~a~~~~--~-~~~v~ii~le~L~Pfp~~~i~~~l~k~~~~~~vwvqEe---~~n~G 957 (1021)
..+|.|++|+++|.|++++++|++.| + ++++.||++-+++|||.+.+. +++++++ +.++|. ...+|
T Consensus 721 ----~~~g~dV~LlasG~~v~eAL~AAe~L~~~~GI~a~V~sv~SikpLdrd~i~--a~r~~~l--~t~Eeh~~~~v~gg 792 (889)
T TIGR03186 721 ----ALAAARVQLLGSGAILGEVQAAARLLRDDWGIDAAVWSVTSFTELARDGRA--AERAQRL--GDAERPPSPHVAQA 792 (889)
T ss_pred ----CCCCCCEEEEeccHHHHHHHHHHHHHhhhhCCCeEEEECCCCCHhHHHHHH--HHHhCCc--ccccccccccHhhh
Confidence 12578999999999999999999987 3 789999999999999999997 7899877 777666 67888
Q ss_pred hHh-------------hHHHHHHHHHHhhccCCCCcEEEEcCC
Q 001713 958 AYT-------------YIAPRLCTAMKAVDRGTMEDIKYVGRA 987 (1021)
Q Consensus 958 ~~~-------------~v~~~i~~~~~~l~~~~~~~~~~vgr~ 987 (1021)
.++ -|...|.+.. +.+++.+|-.
T Consensus 793 Lg~~~~p~va~~D~~~avae~i~~~~-------p~~~~~LG~D 828 (889)
T TIGR03186 793 LGATQGPVIAATDYVRAVPELIRAYV-------PRRYVTLGTD 828 (889)
T ss_pred hCCCCCCeeeecchHHHHHHHHHhhC-------CCCEEEeccC
Confidence 888 4555554432 3578888874
No 41
>KOG0523 consensus Transketolase [Carbohydrate transport and metabolism]
Probab=99.94 E-value=3.2e-25 Score=255.46 Aligned_cols=442 Identities=14% Similarity=0.160 Sum_probs=294.9
Q ss_pred CCcccccceeehHHHHhHHhcCCCCCCCcEEEEEeCccccCCccHHHHHHHhc---CCCCCCcccEEEEEEcCCcccccC
Q 001713 364 SHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS---ALPNYSIGGTIHIVVNNQVAFTTD 440 (1021)
Q Consensus 364 Shlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDgA~sGqG~v~EalnlA---~LP~y~~GGvI~Vv~NNq~g~tT~ 440 (1021)
+|||+++..|+|+|++.++.+.- ..-++|++|||+.+ +|++||+|++| +|.+ +|.|..||+++++++
T Consensus 118 G~lgQgis~a~GmA~~~k~~~k~----~~rv~~vlGDG~~~-eG~~~EA~s~Ag~l~ldn-----LVai~D~n~is~~g~ 187 (632)
T KOG0523|consen 118 GPLGQGISNAVGMAYAGKHLGKA----SNRVYCVLGDGCLT-EGSVWEAMSLAGHLKLDN-----LVAIYDNNKISIDGA 187 (632)
T ss_pred CCccchHHHHHHHHHHHHhhccc----cceEEEEEcCchhc-cchHHHHHhhhhhcccCC-----EEEEEccccccCCCC
Confidence 78999999999999999997661 37799999999999 99999999999 8888 999999999999998
Q ss_pred CCCCcccccHHH-HHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeeeccCCCCCCCCCCCCCHHHHHHH
Q 001713 441 PMSGRSSQYCTD-VAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYRRFGHNEIDEPSFTQPKMYKII 519 (1021)
Q Consensus 441 ~~~~rs~~~~sd-~Aka~g~p~~~VdG~D~eAV~~a~~~A~e~rr~~~gPvlIe~vtYR~~GHne~Ddp~ytqp~ey~~i 519 (1021)
...+.. .++.. +..+|||.+..|||.|++++..|+..|. ..-++|+.|-+.|+--+|---.- -..|
T Consensus 188 t~~~~~-~dV~~~r~ea~g~~~~~V~~~d~d~i~ka~~~a~---~~k~kpt~i~~~t~~g~G~~~ig---------~~~~ 254 (632)
T KOG0523|consen 188 TSLGFD-EDVYQLRFEAFGWNVIIVDGGDVDEIRKAIGKAK---SVKGKPTAIKATTFIGRGSPYIG---------SESV 254 (632)
T ss_pred Cccccc-ccHHHHHHHHhCceEEEEcCcCHHHHHHHHhhhh---hccCCceeeeeeeeeecCccccc---------cccc
Confidence 877654 56666 8999999999999999999999998887 24578999999999887732211 1123
Q ss_pred HhCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHchhcCCCccchh-hhhccCCCC-cccccccCCCCCChH
Q 001713 520 RSHPSSLEIYQNKLLECQHVTQEDINKIQEKVNRILSEEFVASKDYVPNRRDWL-SAYWSGFKS-PEQLSRIRNTGVKPE 597 (1021)
Q Consensus 520 ~~~~dpi~~y~~~Li~~Gi~t~ee~~~i~~~~~~~l~~a~~~A~~~~p~~~~~~-~~~~~~~~~-~~~~~~~~~t~v~~~ 597 (1021)
...+++.... ++.++. +.. |...-.. +... .++. +.+......-.++.-
T Consensus 255 Hg~pl~~~~~---------------~~~k~~------------~~~-P~~~~~v~~~~~-~~p~~~~~~~~~~~~~i~~~ 305 (632)
T KOG0523|consen 255 HGAPLGEDDV---------------ERVKSI------------KGL-PVLIFVVPEKVK-LYPEKPVEDARAISVRIPKI 305 (632)
T ss_pred cCCcchhhHH---------------HHHHhh------------cCC-cceeEEeccccc-cCCCcccccccccccCcCcc
Confidence 2223322111 111100 000 0000000 0000 0000 000000000011100
Q ss_pred HHHHHHHhhhcCCCCCCcccchHHHHHHHHHHhhcCCCcCHHHHHHHHHHHHHhcCCcEEEEcccCCCcccccccceecc
Q 001713 598 ILKNVGKAITTLPENFKPHRGVKKVYELRAQMIETGEGIDWALGEALAFATLLVEGNHVRLSGQDVERGTFSHRHSVLHD 677 (1021)
Q Consensus 598 ~l~~i~~~~~~~P~~f~~h~~l~~~l~~R~~~~~~~~~idw~~AE~lA~~~ll~~~~~Vrl~GeDv~rGtF~~RHavl~d 677 (1021)
. -.-|+.|++-.+- ...|. +=..|+..|-+.++.|...--|..-+||.-
T Consensus 306 ~--------~~~~p~yk~~Dk~---~Atrk-------------~~~~aL~~l~~~~~~vI~~~ad~~~st~td------- 354 (632)
T KOG0523|consen 306 W--------EKSLPTYKVGDKA---VATRK-------------AFGEALAALAEADPRVIGGSADLKNSTLTD------- 354 (632)
T ss_pred c--------cccCCccccCChh---hhHHH-------------HHHHHHHHHhhcCcCeEEEecccCCCchhh-------
Confidence 0 0111222222210 11121 223455666677777776666766676662
Q ss_pred CCcCceeccCCCcccccCCcccEEecCccchHHHHHHHHhhccCCC-CcceEehhhhhhhHhhHHHHHHHHHhhhhhhhc
Q 001713 678 QETGEQYCPLDHVMMNQDAEMFTVSNSSLSEFGVLGFELGYSMENP-NSLVMWEAQFGDFANGAQVIFDQFVNSGESKWL 756 (1021)
Q Consensus 678 q~t~~~y~pL~~L~~~~~~g~~rV~nspLSE~~vlGfe~G~a~~g~-~~lviwEaqFgDF~n~Aq~~iDqfi~s~~~kw~ 756 (1021)
+.+ +++ +.|.+|..|.|++.+||+.|.|..|+ .|.+ .-|..|...| +||..... .
T Consensus 355 ------------~~~-~~~-p~R~i~~giaEq~mv~ia~G~a~~g~~~Pf~---~tf~~F~trA---~dqvr~~a----~ 410 (632)
T KOG0523|consen 355 ------------FFP-KRF-PERFIECGIAEQNMVGIANGIACRGRTIPFC---GTFAAFFTRA---FDQVRMGA----L 410 (632)
T ss_pred ------------hcc-ccC-ccceEEEeeehhhhHHhhhchhcCCCccchh---HHHHHHHHHh---hhheeehh----h
Confidence 221 344 77999999999999999999999999 9998 8999999999 88865432 2
Q ss_pred CccceEEEeCc-cC--CCCCcCCcCchhhHhhhccCCCCCcccCCCchhhhcccccCeEEEecCCHHHHHHHHHHHHhcC
Q 001713 757 RQSGLVVMLPH-GY--DGQGPEHSSARLERFLQMSDDNPYVIPEMDSTLRTQIQECNWQIVNVTTPANYFHVLRRQIHRE 833 (1021)
Q Consensus 757 ~~~~lV~~lPh-G~--~G~GpeHSs~r~Er~Lql~~e~~~~~~~ipg~~~~~~~~~Nl~Vv~pstpad~fhlLrrqi~~~ 833 (1021)
.+.+++...-| |. .-.||.|--. |-+ .+|..+| ||.|..|++..+.+++...++..
T Consensus 411 s~~~v~~v~th~~i~~GeDGPth~~i--edl--------A~frsiP----------n~~v~~PaD~~et~~av~~Aa~~- 469 (632)
T KOG0523|consen 411 SQANVIYVATHDSIGLGEDGPTHQPI--EDL--------AMFRSIP----------NMIVFRPADGNETENAVATAANT- 469 (632)
T ss_pred ccCCcEEEEEeccccccCCCcccccH--HHH--------HHHHhCC----------CceEEecCchHHHHHHHHHHHhc-
Confidence 45777777777 33 3479999765 332 3588998 69999999999999999999986
Q ss_pred CCCcEEEEeeccccCCccccCCcccccccCCCCCCCCCCCcceEeecCccccc-cCCCC-CeEEEEeechhHHHHHHHHH
Q 001713 834 FRKPLVVMSPKNLLRHKECKSNLSEFDDVQGHPGFDKQGTRFKRLIKDQNEHS-DLEEG-IRRLILCSGKVYYELYEERK 911 (1021)
Q Consensus 834 ~~kPliv~~pK~Llr~~~~~s~~~e~~~~~~~~~~~~~~~~f~~vi~~~~~~~-~~~~g-~~~~Iv~~Gk~~~~l~~a~~ 911 (1021)
.+.|.|+..+...+- .+.. . ..| +.++++ +..++ .|+++|.+|..++.+++|++
T Consensus 470 ~~~p~i~~~~r~~~~---------~~~~---~-------~~~-----~igkg~~vl~~~~~dV~LiG~Gs~v~~cl~AA~ 525 (632)
T KOG0523|consen 470 KGTPSIRTLSRQNLP---------IYNN---T-------EIE-----EIGKGKYVLQEVEPDVILIGTGSEVQECLEAAE 525 (632)
T ss_pred CCCeeEEEecCcccc---------ccCC---C-------chh-----hhccccEEEecCCCCEEEEeccHHHHHHHHHHH
Confidence 345888865533321 1110 0 001 122222 23334 49999999999999999999
Q ss_pred Hc--CCCcEEEEEecccCCCCHHHHHHHHHcCCCceEEEEecCCcc-cchH
Q 001713 912 KH--SASDIAICRVEQLCPFPYDLVQRELKRYPNAEVVWSQEEPMN-MGAY 959 (1021)
Q Consensus 912 ~~--~~~~v~ii~le~L~Pfp~~~i~~~l~k~~~~~~vwvqEe~~n-~G~~ 959 (1021)
.| .++++.|||+.+++|||..+|..+-+.+.-. +.|.|+..- ||..
T Consensus 526 ~L~~~gi~vrVvd~~~~kplD~~li~~~~q~~e~r--i~v~ed~~~~gsi~ 574 (632)
T KOG0523|consen 526 LLSEDGIKVRVVDPFTWKPLDVALIRSLAQSHEYR--ISVLEDHVPAGSIE 574 (632)
T ss_pred HHHhcCceEEEecccceeecchHHhhhhhccccee--EEEccCCCCCcchh
Confidence 87 4689999999999999999998888777654 444454443 3443
No 42
>PF02779 Transket_pyr: Transketolase, pyrimidine binding domain; InterPro: IPR005475 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 2BFF_B 2BEV_B 1OLS_B 1V16_B 2BFD_B 1V1M_B 2BFC_B 1X80_B 1X7W_B 1OLX_B ....
Probab=99.93 E-value=4.8e-26 Score=235.13 Aligned_cols=177 Identities=24% Similarity=0.269 Sum_probs=149.0
Q ss_pred CCcCHHHHHHHHHHHHHhcCCcEEEEcccCCCcccccccceeccCCcCceeccCCCcccccCCcccEEecCccchHHHHH
Q 001713 634 EGIDWALGEALAFATLLVEGNHVRLSGQDVERGTFSHRHSVLHDQETGEQYCPLDHVMMNQDAEMFTVSNSSLSEFGVLG 713 (1021)
Q Consensus 634 ~~idw~~AE~lA~~~ll~~~~~Vrl~GeDv~rGtF~~RHavl~dq~t~~~y~pL~~L~~~~~~g~~rV~nspLSE~~vlG 713 (1021)
++++|..|.+.|+..+|+++++|++.|+|+++|+|.. + .++. ..+|+.|++|+||+|++++|
T Consensus 1 ~k~~~~~a~~~~l~~~~~~d~~vv~~~~D~~~~~~~~---------~-------~~~~--~~~~~~r~i~~gIaE~~~vg 62 (178)
T PF02779_consen 1 KKISMRDAFGEALAELAEEDPRVVVIGADLGGGTFGV---------T-------FGLA--FPFGPGRFINTGIAEQNMVG 62 (178)
T ss_dssp -EEEHHHHHHHHHHHHHHHTTTEEEEESSTHHHHTST---------T-------TTHH--BHHTTTTEEE--S-HHHHHH
T ss_pred CCccHHHHHHHHHHHHHhhCCCEEEEECCcCcchhhh---------h-------hhcc--ccCCCceEEecCcchhhccc
Confidence 3689999999999999999999999999999999998 4 6777 67778899999999999999
Q ss_pred HHHhhccCCC-CcceEehhhhhhhHhhHHHHHHHHHhhhhhhhcCccceEEEeCccCCCCCcCCcCchhhHhhhccCCCC
Q 001713 714 FELGYSMENP-NSLVMWEAQFGDFANGAQVIFDQFVNSGESKWLRQSGLVVMLPHGYDGQGPEHSSARLERFLQMSDDNP 792 (1021)
Q Consensus 714 fe~G~a~~g~-~~lviwEaqFgDF~n~Aq~~iDqfi~s~~~kw~~~~~lV~~lPhG~~G~GpeHSs~r~Er~Lql~~e~~ 792 (1021)
++.|+|+.|. ++ +||.+|++|+..||......+......+....+++++.+.|+.+.|++|++...+.+|+
T Consensus 63 ~a~GlA~~G~~~~--~~~~~f~~F~~~~q~r~~~~~~~~~~~~~~~v~v~~~~g~~~~~~G~tH~s~~d~~~~~------ 134 (178)
T PF02779_consen 63 MAAGLALAGGLRP--PVESTFADFLTPAQIRAFDQIRNDMAYGQLPVPVGTRAGLGYGGDGGTHHSIEDEAILR------ 134 (178)
T ss_dssp HHHHHHHHSSSEE--EEEEEEGGGGGGGHHHHHHHHHHHHHHHTS-EEEEEEESGGGSTTGTTTSSSSHHHHHH------
T ss_pred eeeeeeecccccc--eeEeeccccccccchhhhhhhhhhhhcccceecceeecCcccccccccccccccccccc------
Confidence 9999999995 66 56999999999666555444544556777777888899999988999998887999854
Q ss_pred CcccCCCchhhhcccccCeEEEecCCHHHHHHHHHHHHhcCCCCcEEEEeeccccCCc
Q 001713 793 YVIPEMDSTLRTQIQECNWQIVNVTTPANYFHVLRRQIHREFRKPLVVMSPKNLLRHK 850 (1021)
Q Consensus 793 ~~~~~ipg~~~~~~~~~Nl~Vv~pstpad~fhlLrrqi~~~~~kPliv~~pK~Llr~~ 850 (1021)
++|| |+|++|+||+|++++||.++.++.++|++|++||.+|+|+
T Consensus 135 ----~iPg----------~~v~~Psd~~e~~~~l~~a~~~~~~~P~~ir~~r~~~~~~ 178 (178)
T PF02779_consen 135 ----SIPG----------MKVVVPSDPAEAKGLLRAAIRRESDGPVYIREPRGLYPHQ 178 (178)
T ss_dssp ----TSTT----------EEEEE-SSHHHHHHHHHHHHHSSSSSEEEEEEESSEES-T
T ss_pred ----cccc----------cccccCCCHHHHHHHHHHHHHhCCCCeEEEEeeHHhCCCC
Confidence 8886 9999999999999999999996568999999999999985
No 43
>PRK09405 aceE pyruvate dehydrogenase subunit E1; Reviewed
Probab=99.93 E-value=5.8e-22 Score=242.83 Aligned_cols=493 Identities=14% Similarity=0.184 Sum_probs=307.3
Q ss_pred cccccceeehHHHHhHHhcCC--CCCCCcEEEEEeCccccCCccHHHHHHHhc---CCCCCCcccEEEEEEcCCcccccC
Q 001713 366 LEAVDPVVIGKTRAKQYYSND--MDRTKNMAVLIHGDGSFAGQGVVYETLHLS---ALPNYSIGGTIHIVVNNQVAFTTD 440 (1021)
Q Consensus 366 lg~~~PvA~G~A~A~q~~~~d--~~~~~~v~v~~~GDgA~sGqG~v~EalnlA---~LP~y~~GGvI~Vv~NNq~g~tT~ 440 (1021)
+|.+.+.|+|+|++.++.... .+..+.-++|++|||.+. ||.++|++.+| +|.+ +|+||.+|...+..+
T Consensus 197 ~G~G~~~a~~~A~~~kyl~~~~~~~~~~~rv~~~~GDGEld-Eg~~~EA~~~A~~~~LdN-----Li~ivD~N~q~lDG~ 270 (891)
T PRK09405 197 MGLGPIMAIYQARFLKYLENRGLKDTSDQKVWAFLGDGEMD-EPESLGAISLAAREKLDN-----LIFVINCNLQRLDGP 270 (891)
T ss_pred cchhHHHHHHHHHhCccccccccccCCCceEEEEEcchhhc-cHHHHHHHHHHHHhCCCC-----EEEEEECCCcccCCc
Confidence 888889999999999853221 122346799999999999 99999999999 9998 999999999999988
Q ss_pred CCCC-cccccHHHHHhhcCccEEEE--------------------------e----------------------------
Q 001713 441 PMSG-RSSQYCTDVAKALDAPIFHV--------------------------N---------------------------- 465 (1021)
Q Consensus 441 ~~~~-rs~~~~sd~Aka~g~p~~~V--------------------------d---------------------------- 465 (1021)
.... .....+.++.+++||.++.| |
T Consensus 271 v~~~~~~~~~l~~~f~a~GW~Vi~v~wG~~wd~l~~~d~~g~L~~~~~~~~Dg~yq~~~~~~ga~~R~~ffg~~~~~~~l 350 (891)
T PRK09405 271 VRGNGKIIQELEGIFRGAGWNVIKVIWGSRWDPLLAKDTSGKLVQLMNETVDGDYQTYKAKDGAYVREHFFGKYPETKAL 350 (891)
T ss_pred cccccccchhHHHHHhhCCCEEEEEeccccchhhhccCCccHHHHHHHhCCcHHHHHHHhcccHHHHHHhcCCCHHHHHH
Confidence 7653 22467889999999999999 4
Q ss_pred ---------------CCCHHHHHHHHHHHHHHHHccCCCEEEEEeeeccCCC-CC--CCCCCCCCHHHHHHHHhCCCHHH
Q 001713 466 ---------------GDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYRRFGH-NE--IDEPSFTQPKMYKIIRSHPSSLE 527 (1021)
Q Consensus 466 ---------------G~D~eAV~~a~~~A~e~rr~~~gPvlIe~vtYR~~GH-ne--~Ddp~ytqp~ey~~i~~~~dpi~ 527 (1021)
|+|+++++.|.+.|.+. .++|++|-+.|..-+|- .. ......-
T Consensus 351 v~~~sD~~i~~l~~gGHD~~~i~~A~~~A~~~---~~~PtvIia~TvkG~G~~~~~e~~~~~H~---------------- 411 (891)
T PRK09405 351 VADMSDDDIWALNRGGHDPRKVYAAYKAAVEH---KGQPTVILAKTIKGYGMGEAGEGKNIAHQ---------------- 411 (891)
T ss_pred HhhCCHHHHHHhccCCCCHHHHHHHHHHHHhC---CCCCEEEEEeceecCCCCcccCCCccccC----------------
Confidence 99999999999988752 36899999999998886 32 1111100
Q ss_pred HHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHchhcCCCccchhhhhccCCCCcccccccCCCCCChHHHHHHHHh--
Q 001713 528 IYQNKLLECQHVTQEDINKIQEKVNRILSEEFVASKDYVPNRRDWLSAYWSGFKSPEQLSRIRNTGVKPEILKNVGKA-- 605 (1021)
Q Consensus 528 ~y~~~Li~~Gi~t~ee~~~i~~~~~~~l~~a~~~A~~~~p~~~~~~~~~~~~~~~~~~~~~~~~t~v~~~~l~~i~~~-- 605 (1021)
.+.++++++++.++.+.--+.+ ++.-..+|..+.. +.+.++.+.+.
T Consensus 412 --------~~~l~~e~~~~~r~~~g~~~~d------------~~~~~~~~~~~~~------------~s~e~~~l~~~r~ 459 (891)
T PRK09405 412 --------VKKLDLDDLKHFRDRFNIPISD------------EQLEKLPYYKPGE------------DSPEIKYLHERRK 459 (891)
T ss_pred --------CCCCCHHHHHHHHHHcCCCCCh------------hHhccCCCcCCCC------------CCHHHHHHHHHHH
Confidence 1223444444444333211100 0000111211100 00011111111
Q ss_pred -hh-cCCCCCCcccchH----HHHHHHHHHhhcCCCcCHHHHHHHHHHHHHhc---CCcEEEEcccCCC-----------
Q 001713 606 -IT-TLPENFKPHRGVK----KVYELRAQMIETGEGIDWALGEALAFATLLVE---GNHVRLSGQDVER----------- 665 (1021)
Q Consensus 606 -~~-~~P~~f~~h~~l~----~~l~~R~~~~~~~~~idw~~AE~lA~~~ll~~---~~~Vrl~GeDv~r----------- 665 (1021)
+. .+|..-...+.+. ..++.-.+ -.+++.+.=-+|=-.++..|+.+ +++|+..=-|+.|
T Consensus 460 ~l~g~~p~r~~~~~~~~~P~~~~~~~~~~-~~~~~~~sT~~Afgr~L~~L~~~~~~~~riV~i~pD~a~t~g~~~~f~~~ 538 (891)
T PRK09405 460 ALGGYLPARRPKFEPLEVPALSAFEALLK-GSGEREISTTMAFVRILNILLKDKEIGKRIVPIIPDEARTFGMEGLFRQI 538 (891)
T ss_pred HcCCCCCCCCCCCCCCCCCChhhHHHhhc-cCCCCcccHHHHHHHHHHHHHhccccCCcEEEeccccccccCcchhhccc
Confidence 11 0111101111110 00110000 01123333333444566677775 8999999999976
Q ss_pred cccccccceeccCCcCceeccCCCccc--ccCCcccEEecCccchHHHHH--HHHhhccC----CCCcceEehhhhhhh-
Q 001713 666 GTFSHRHSVLHDQETGEQYCPLDHVMM--NQDAEMFTVSNSSLSEFGVLG--FELGYSME----NPNSLVMWEAQFGDF- 736 (1021)
Q Consensus 666 GtF~~RHavl~dq~t~~~y~pL~~L~~--~~~~g~~rV~nspLSE~~vlG--fe~G~a~~----g~~~lviwEaqFgDF- 736 (1021)
|.|+. .|..|.|-+.=+. =.+.-+.|++|..|+|++.+| .+.|.|++ +..|++++ |+-|
T Consensus 539 gi~~~---------~gq~y~~~d~~~~~~yke~~PgRf~e~GIAEqnmv~~~vAAGlA~a~~G~g~iPF~~t---ya~F~ 606 (891)
T PRK09405 539 GIYNP---------HGQLYTPVDRDQLMYYKESKDGQILQEGINEAGAMASWIAAATSYSTHGEPMIPFYIY---YSMFG 606 (891)
T ss_pred ccccc---------ccccccccccHHHHHHHHcCCCcEEEechhhhHHHHHHHHHHHhhhhcCCCceEEEEe---hHHhh
Confidence 66777 6788988653110 012348999999999999999 99997777 66999954 5555
Q ss_pred HhhHHHHHHHHHhhhhhhhcCccceEEEeCccC---CCCCcCCcCchhhHhhhccCCCCCcccCCCchhhhcccccCeEE
Q 001713 737 ANGAQVIFDQFVNSGESKWLRQSGLVVMLPHGY---DGQGPEHSSARLERFLQMSDDNPYVIPEMDSTLRTQIQECNWQI 813 (1021)
Q Consensus 737 ~n~Aq~~iDqfi~s~~~kw~~~~~lV~~lPhG~---~G~GpeHSs~r~Er~Lql~~e~~~~~~~ipg~~~~~~~~~Nl~V 813 (1021)
..+| .||+-+++-+ +..++.|..-||. .|.|++|.+. |..+ .+..+| ||.|
T Consensus 607 ~~Ra---~Dqir~a~~~---~~~~v~iggt~gg~tl~~eG~qHqdg--~s~~--------l~raiP----------n~tv 660 (891)
T PRK09405 607 FQRI---GDLAWAAGDQ---RARGFLLGGTAGRTTLNGEGLQHEDG--HSHI--------LASTIP----------NCVS 660 (891)
T ss_pred hhhH---HHHHHHHHHh---cCCCeEEEEECccccCCCCcccCCch--hhHH--------HHhhCC----------CCEE
Confidence 4566 7876655322 3456665555544 3678888776 3322 245777 5999
Q ss_pred EecCCHHHHHHHHHHHHhc---CCCCcEEEEeeccccCCccccCCc-ccccccCCCCCCCCCCCcceEeecCcccc-ccC
Q 001713 814 VNVTTPANYFHVLRRQIHR---EFRKPLVVMSPKNLLRHKECKSNL-SEFDDVQGHPGFDKQGTRFKRLIKDQNEH-SDL 888 (1021)
Q Consensus 814 v~pstpad~fhlLrrqi~~---~~~kPliv~~pK~Llr~~~~~s~~-~e~~~~~~~~~~~~~~~~f~~vi~~~~~~-~~~ 888 (1021)
+.|+.+.+...+++..+++ ....|..+++ |+..+...... +++. | .+++. .+.
T Consensus 661 ~~PADa~E~a~iv~~~l~rm~~~~~~~~yYlr---l~ne~~~~~~~pe~~~--------------~-----~igKg~y~L 718 (891)
T PRK09405 661 YDPAFAYEVAVIVQDGLRRMYGEQENVFYYIT---VMNENYHQPAMPEGAE--------------E-----GILKGMYKL 718 (891)
T ss_pred EeCCCHHHHHHHHHHHHHHHhhcCCCeEEEEE---eCCCCCCCCCCCcccc--------------c-----ccceEEEEe
Confidence 9999999999999998763 2233344332 11011100000 1111 1 11111 122
Q ss_pred CCC------CeEEEEeechhHHHHHHHHHHcC---CCcEEEEEecccCCCCHHHHHHHH---------HcCCCceEEEEe
Q 001713 889 EEG------IRRLILCSGKVYYELYEERKKHS---ASDIAICRVEQLCPFPYDLVQREL---------KRYPNAEVVWSQ 950 (1021)
Q Consensus 889 ~~g------~~~~Iv~~Gk~~~~l~~a~~~~~---~~~v~ii~le~L~Pfp~~~i~~~l---------~k~~~~~~vwvq 950 (1021)
++| .|++|+++|-++.++++|++.|. ++++.||++-+++|||.+.+.... ++++.+ +.|
T Consensus 719 r~g~~~~~~~dV~LlasG~~v~eAL~AAe~L~~~~GI~a~Visv~SikpLdrd~i~~~~~~~l~~~~~~~~~~V--~t~- 795 (891)
T PRK09405 719 ETAEGKKGKPKVQLLGSGTILREVLEAAEILAEDYGVAADVWSVTSFNELARDGQDVERWNMLHPTEEPRVPYV--TQV- 795 (891)
T ss_pred ccCCCCCCCCCEEEEeccHHHHHHHHHHHHHhhhhCCCeEEEECCCCCHhhHHHHHHHHHhhcCcccccccchh--hhh-
Confidence 333 38999999999999999999873 789999999999999999998877 566655 444
Q ss_pred cCCcccchH-------hhHHHHHHHHHHhhccCCCCcEEEEcCC
Q 001713 951 EEPMNMGAY-------TYIAPRLCTAMKAVDRGTMEDIKYVGRA 987 (1021)
Q Consensus 951 Ee~~n~G~~-------~~v~~~i~~~~~~l~~~~~~~~~~vgr~ 987 (1021)
|++ .+|.. +-|...|.+.+ +.+++.+|-.
T Consensus 796 ee~-~gG~~Vtv~D~~~aVae~la~~~-------p~~~~~LGvD 831 (891)
T PRK09405 796 LKG-AEGPVVAATDYMKLFAEQIRAFV-------PGDYVVLGTD 831 (891)
T ss_pred hcc-cCCcEEEecchHHHHHHHHHHhC-------CCCEEEEecC
Confidence 444 66666 44444443322 2578888874
No 44
>PRK13012 2-oxoacid dehydrogenase subunit E1; Provisional
Probab=99.92 E-value=3e-21 Score=237.44 Aligned_cols=454 Identities=15% Similarity=0.188 Sum_probs=285.0
Q ss_pred CCcccccceeehHHHHhHHhcCC--CCCCCcEEEEEeCccccCCccHHHHHHHhc---CCCCCCcccEEEEEEcCCcccc
Q 001713 364 SHLEAVDPVVIGKTRAKQYYSND--MDRTKNMAVLIHGDGSFAGQGVVYETLHLS---ALPNYSIGGTIHIVVNNQVAFT 438 (1021)
Q Consensus 364 Shlg~~~PvA~G~A~A~q~~~~d--~~~~~~v~v~~~GDgA~sGqG~v~EalnlA---~LP~y~~GGvI~Vv~NNq~g~t 438 (1021)
..||.+.+.|+|.|++.++.... .+....-++|++|||.+. ||.++|++.+| +|.+ +|+||.+|...+.
T Consensus 203 GSlG~G~~~ai~~A~~~ryl~~~g~~~~~~~~v~~~lGDGEl~-Eg~~~eA~~~A~~~~LdN-----Li~ivD~N~~~lD 276 (896)
T PRK13012 203 GSMGIGPINAIYQARFMRYLQHRGLKDTSGRKVWGFFGDGEMD-EPESIAALSLAAREGLDN-----LVFVINCNLQRLD 276 (896)
T ss_pred CCchHHHHHHHHHHHhcccccccccccCCCCeEEEEEchhhhc-cHHHHHHHHHHHHhCCCc-----EEEEEECCCcccc
Confidence 45999999999999999854221 122346799999999999 99999999999 9998 9999999999999
Q ss_pred cCCCCCcc-cccHHHHHhhcCccEEEE--------------------------e--------------------------
Q 001713 439 TDPMSGRS-SQYCTDVAKALDAPIFHV--------------------------N-------------------------- 465 (1021)
Q Consensus 439 T~~~~~rs-~~~~sd~Aka~g~p~~~V--------------------------d-------------------------- 465 (1021)
.+....-. ...+.++.+++||.++.| |
T Consensus 277 G~v~~~~~~~~~l~~~f~a~GW~Vi~v~wg~~wd~l~~~d~~~~l~~~~~~~~Dg~yq~~~~~~g~~~r~~ff~~~~~~~ 356 (896)
T PRK13012 277 GPVRGNGRIIQELEALFRGAGWNVIKVLWGSDWDALFARDTTGALVRRFAETVDGQFQTFKANDGAYNREHFFGQDPELA 356 (896)
T ss_pred CccccccccchHHHHHHHhCCCEEEEEecccchHHHhcCCCccHHHHHHHhCCcHHHHHHhhcchHHHHHHhccccHHHH
Confidence 88765433 367889999999999999 8
Q ss_pred -----------------CCCHHHHHHHHHHHHHHHHccCCCEEEEEeeeccCCCC---CCCCCCCCCHHHHHHHHhCCCH
Q 001713 466 -----------------GDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYRRFGHN---EIDEPSFTQPKMYKIIRSHPSS 525 (1021)
Q Consensus 466 -----------------G~D~eAV~~a~~~A~e~rr~~~gPvlIe~vtYR~~GHn---e~Ddp~ytqp~ey~~i~~~~dp 525 (1021)
|+|+++|++|.+.|.+ ..++|++|-+.|..-+|=. |...-..-+.. -..+-
T Consensus 357 ~lv~~~~d~~i~~l~rgGHD~~~i~~A~~~a~~---~~~~PtvIla~TvkG~G~~~~~e~~~~~H~~~~------l~~e~ 427 (896)
T PRK13012 357 ALVAHLSDEDIDRLKRGGHDPRKVYAAYAAAVR---HKGQPTVILAKTKKGYGMGEAGEGRMTTHQQKK------LDVEA 427 (896)
T ss_pred HHhhcccHHhhhhhcCCCCCHHHHHHHHHHHHh---CCCCCEEEEEEeeecCCCCcccCCCcccccCCC------CCHHH
Confidence 9999999999998875 3358999999999988843 32221111000 01122
Q ss_pred HHHHHHHHHHccC-CCHHHHHHH--------HHHHHHHHHHHHHHchhcCCCccchhhhhccCCCCcccccccCCCCCCh
Q 001713 526 LEIYQNKLLECQH-VTQEDINKI--------QEKVNRILSEEFVASKDYVPNRRDWLSAYWSGFKSPEQLSRIRNTGVKP 596 (1021)
Q Consensus 526 i~~y~~~Li~~Gi-~t~ee~~~i--------~~~~~~~l~~a~~~A~~~~p~~~~~~~~~~~~~~~~~~~~~~~~t~v~~ 596 (1021)
+..|++++ |+ +++++++++ ..+++. +.+..+....+.|.... .+.. +
T Consensus 428 ~~~~r~~~---g~p~~d~~~~~~pf~~p~~~~~~~~~-l~~r~~~l~g~~P~r~~----~~~~--------------l-- 483 (896)
T PRK13012 428 LKAFRDRF---RLPLSDEQLEQLPFYKPAEDSPEMRY-LHARRAALGGYLPRRRT----AAPP--------------L-- 483 (896)
T ss_pred HHHHHHHc---CCCCChhhhccCCCcCCccccHHHHH-HHHHHHHhcCcCCcccc----cccc--------------c--
Confidence 33444444 21 333333320 001111 11111111111111100 0000 0
Q ss_pred HHHHHHHHhhhcCCCCCCcccchHHHHHHHHHHhhcCCCcCHHHHHHHHHHHHHhc---CCcEEEEcccCCC--------
Q 001713 597 EILKNVGKAITTLPENFKPHRGVKKVYELRAQMIETGEGIDWALGEALAFATLLVE---GNHVRLSGQDVER-------- 665 (1021)
Q Consensus 597 ~~l~~i~~~~~~~P~~f~~h~~l~~~l~~R~~~~~~~~~idw~~AE~lA~~~ll~~---~~~Vrl~GeDv~r-------- 665 (1021)
.+|.. .....++.. ..++.+.=-+|=-.++..|+.. +++|+..--|+.|
T Consensus 484 -----------~~p~~----~~~~~~~~~-----~~~~~isTr~Afgr~L~~L~k~~~~~~~iV~i~aDla~t~gm~~~f 543 (896)
T PRK13012 484 -----------PVPPL----SAFAQFALG-----AGGKEMSTTMAFVRMLGNLLKDKALGPRIVPIVADEARTFGMANLF 543 (896)
T ss_pred -----------CCCch----hhHHHhhcc-----cCCCcchHHHHHHHHHHHHHhccccCCCEEEeccccccccCccccc
Confidence 01100 000000000 0122233333444566777777 8999888888873
Q ss_pred ---cccccccceeccCCcCceecc-----CCCcccccCCcccEEecCccchHHHHH--HHHhhccC----CCCcceEehh
Q 001713 666 ---GTFSHRHSVLHDQETGEQYCP-----LDHVMMNQDAEMFTVSNSSLSEFGVLG--FELGYSME----NPNSLVMWEA 731 (1021)
Q Consensus 666 ---GtF~~RHavl~dq~t~~~y~p-----L~~L~~~~~~g~~rV~nspLSE~~vlG--fe~G~a~~----g~~~lviwEa 731 (1021)
|+|+. .|..|.| +.... +.+ +.|++|..|+|++.++ .+.|.|++ +..|+++
T Consensus 544 ~~~~i~~~---------~gq~y~~~d~~~~~~yk--e~~-pgR~ie~GIaEqnm~~~~~AAG~a~a~~G~g~iPf~~--- 608 (896)
T PRK13012 544 RQVGIYSP---------LGQLYEPEDAGSLLYYR--EAK-DGQILEEGITEAGAISSWIAAATSYSVHGLPMLPFYI--- 608 (896)
T ss_pred cccccccc---------ccccccccchhHHhhhh--hCC-CCcEEecchhhhhhhHHHHHHHhhHHhcCCCcEEEEE---
Confidence 44554 4566777 33333 344 7899999999999977 66666555 4599984
Q ss_pred hhhhh-HhhHHHHHHHHHhhhhhhhcCccceEEEeCccC---CCCCcCCcCchhhHhhhccCCCCCcccCCCchhhhccc
Q 001713 732 QFGDF-ANGAQVIFDQFVNSGESKWLRQSGLVVMLPHGY---DGQGPEHSSARLERFLQMSDDNPYVIPEMDSTLRTQIQ 807 (1021)
Q Consensus 732 qFgDF-~n~Aq~~iDqfi~s~~~kw~~~~~lV~~lPhG~---~G~GpeHSs~r~Er~Lql~~e~~~~~~~ipg~~~~~~~ 807 (1021)
-|+-| +.++ .||+-+++- .+..++.+...||. .+.|++|... |... .+..+|
T Consensus 609 tfs~F~~~R~---~Dqir~a~~---~~~~~vlig~T~gg~tlg~dG~THQ~~--esla--------l~RaIP-------- 664 (896)
T PRK13012 609 YYSMFGFQRV---GDLIWAAAD---QRARGFLLGATAGRTTLGGEGLQHQDG--HSHL--------LASTIP-------- 664 (896)
T ss_pred ehHHHHHHHH---HHHHHHHHh---cccCCeEEEEeCcccccCCCCCCCcch--HhHH--------HHHhCC--------
Confidence 45544 3444 888655432 23457888888865 3789999876 4432 245777
Q ss_pred ccCeEEEecCCHHHHHHHHHHHHhc--C--CCCcEEEEeeccccCCccccCCcccccccCCCCCCCCCCCcceEeecCcc
Q 001713 808 ECNWQIVNVTTPANYFHVLRRQIHR--E--FRKPLVVMSPKNLLRHKECKSNLSEFDDVQGHPGFDKQGTRFKRLIKDQN 883 (1021)
Q Consensus 808 ~~Nl~Vv~pstpad~fhlLrrqi~~--~--~~kPliv~~pK~Llr~~~~~s~~~e~~~~~~~~~~~~~~~~f~~vi~~~~ 883 (1021)
|+.|+.|+.+.+...+++.++++ . .+.|..|...+.-+.+|.- + +++. -++.+ |.+. +.+
T Consensus 665 --N~~V~~PADa~E~a~iv~~al~~m~~~~~~~p~YIrL~r~~~~~p~~--~-~~~~-----~~i~k--G~y~--l~~-- 728 (896)
T PRK13012 665 --NCRAYDPAFAYELAVIVDDGMRRMLEEQEDVFYYLTVMNENYAQPAL--P-EGAE-----EGILK--GMYR--LAA-- 728 (896)
T ss_pred --CCEEEeCCCHHHHHHHHHHHHHHHHhccCCCeEEEEecCCCCCCCCC--C-ccch-----hcccc--CcEE--Eec--
Confidence 59999999999999999987743 1 2457555433222211110 0 1111 01222 3221 111
Q ss_pred ccccCCCCCeEEEEeechhHHHHHHHHHHc--C-CCcEEEEEecccCCCCHHHHH
Q 001713 884 EHSDLEEGIRRLILCSGKVYYELYEERKKH--S-ASDIAICRVEQLCPFPYDLVQ 935 (1021)
Q Consensus 884 ~~~~~~~g~~~~Iv~~Gk~~~~l~~a~~~~--~-~~~v~ii~le~L~Pfp~~~i~ 935 (1021)
.+++.|++|+++|.++..+++|++.| + ++++.||++-++.|||.+.+.
T Consensus 729 ----~~~g~dv~LiasGs~v~eAl~AAe~L~~e~GI~a~V~sv~S~kpLd~d~i~ 779 (896)
T PRK13012 729 ----AAEAPRVQLLGSGAILREVLAAARLLADDWGVDADVWSVTSFTELRRDGLA 779 (896)
T ss_pred ----cCCCCCEEEEEecHHHHHHHHHHHHHHhhhCCCeEEEECCCCCHhHHHHHH
Confidence 13467999999999999999999987 4 789999999999999999883
No 45
>cd07036 TPP_PYR_E1-PDHc-beta_like Pyrimidine (PYR) binding domain of the beta subunits of the E1 components of human pyruvate dehydrogenase complex (E1- PDHc) and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of the beta subunits of the E1 components of: human pyruvate dehydrogenase complex (E1- PDHc), the acetoin dehydrogenase complex (ADC), and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domain
Probab=99.91 E-value=6.7e-24 Score=217.40 Aligned_cols=158 Identities=27% Similarity=0.433 Sum_probs=134.9
Q ss_pred HHHHHHHHHHhcCCcEEEEcccCCC--cccccccceeccCCcCceeccCCCcccccCCcccEEecCccchHHHHHHHHhh
Q 001713 641 GEALAFATLLVEGNHVRLSGQDVER--GTFSHRHSVLHDQETGEQYCPLDHVMMNQDAEMFTVSNSSLSEFGVLGFELGY 718 (1021)
Q Consensus 641 AE~lA~~~ll~~~~~Vrl~GeDv~r--GtF~~RHavl~dq~t~~~y~pL~~L~~~~~~g~~rV~nspLSE~~vlGfe~G~ 718 (1021)
|.+.++..+++++++|++.|+|+.. |.|.. | +++. ++|+..|++|++|+|++++|++.|+
T Consensus 2 ~~~~~l~~~~~~~~~vv~l~~D~~~~~g~~~~---------~-------~~~~--~~~p~~R~~~~gIaEq~~vg~AaGl 63 (167)
T cd07036 2 AINEALDEEMERDPRVVVLGEDVGDYGGVFKV---------T-------KGLL--DKFGPDRVIDTPIAEAGIVGLAVGA 63 (167)
T ss_pred HHHHHHHHHHhcCCCEEEECcccccCCCcchH---------h-------HHHH--HhCCCceEEeCCCcHHHHHHHHHHH
Confidence 4566788999999999999999964 45655 4 8898 8897779999999999999999999
Q ss_pred ccCCCCcceEehhhhhhhHhhHHHHHHHHHhhh-hhhh----cCccceEEEeCccC-CCCCcCCcCchhhHhhhccCCCC
Q 001713 719 SMENPNSLVMWEAQFGDFANGAQVIFDQFVNSG-ESKW----LRQSGLVVMLPHGY-DGQGPEHSSARLERFLQMSDDNP 792 (1021)
Q Consensus 719 a~~g~~~lviwEaqFgDF~n~Aq~~iDqfi~s~-~~kw----~~~~~lV~~lPhG~-~G~GpeHSs~r~Er~Lql~~e~~ 792 (1021)
|+.|.+|++ |+||++|+.+| +||+..+. ...| .++.|++++.++|. .+.|++||.. .+++|+
T Consensus 64 A~~G~~pi~--~~~~a~Fl~ra---~dQi~~~~a~~~~~~~~~~~~pv~i~~~~gg~~~~G~ths~~-~~a~lr------ 131 (167)
T cd07036 64 AMNGLRPIV--EIMFADFALPA---FDQIVNEAAKLRYMSGGQFKVPIVIRGPNGGGIGGGAQHSQS-LEAWFA------ 131 (167)
T ss_pred HHcCCEEEE--EeehHHHHHHH---HHHHHHHHHHHHHhcCCCccCCEEEEEeCCCCCCcChhhhhh-HHHHHh------
Confidence 999999954 99999999999 88876542 3344 24689999999965 5689999876 788854
Q ss_pred CcccCCCchhhhcccccCeEEEecCCHHHHHHHHHHHHhcCCCCcEEEEeec
Q 001713 793 YVIPEMDSTLRTQIQECNWQIVNVTTPANYFHVLRRQIHREFRKPLVVMSPK 844 (1021)
Q Consensus 793 ~~~~~ipg~~~~~~~~~Nl~Vv~pstpad~fhlLrrqi~~~~~kPliv~~pK 844 (1021)
++|| |+|++||+|.|++++||+++.. ++|+||+|||
T Consensus 132 ----~iPg----------~~V~~Psd~~e~~~~l~~~~~~--~~P~~~~e~k 167 (167)
T cd07036 132 ----HIPG----------LKVVAPSTPYDAKGLLKAAIRD--DDPVIFLEHK 167 (167)
T ss_pred ----cCCC----------CEEEeeCCHHHHHHHHHHHHhC--CCcEEEEecC
Confidence 7885 9999999999999999999986 7899999998
No 46
>COG3958 Transketolase, C-terminal subunit [Carbohydrate transport and metabolism]
Probab=99.86 E-value=1.1e-20 Score=203.56 Aligned_cols=261 Identities=17% Similarity=0.230 Sum_probs=206.9
Q ss_pred HHHHHHhcCCcEEEEcccCCCcccccccceeccCCcCceeccCCCcccccCCcccEEecCccchHHHHHHHHhhccCCCC
Q 001713 645 AFATLLVEGNHVRLSGQDVERGTFSHRHSVLHDQETGEQYCPLDHVMMNQDAEMFTVSNSSLSEFGVLGFELGYSMENPN 724 (1021)
Q Consensus 645 A~~~ll~~~~~Vrl~GeDv~rGtF~~RHavl~dq~t~~~y~pL~~L~~~~~~g~~rV~nspLSE~~vlGfe~G~a~~g~~ 724 (1021)
++..|-..+.+|++.=-|+..-| . | ..+. ++| |.|++|..|+|+..+|++.|+|+.|.+
T Consensus 16 ~L~~l~~~~~diVvl~ADl~~St-~----------~-------~~f~--~~f-PdR~~NvGIaEQ~mvg~AAGLA~~Gk~ 74 (312)
T COG3958 16 TLAELGRKNSDIVVLDADLSSST-K----------T-------GYFA--KEF-PDRFFNVGIAEQDMVGTAAGLALAGKK 74 (312)
T ss_pred HHHHHHhcCCCEEEEeccccccc-c----------h-------hHHH--HhC-chhheecchHHHHHHHHHHHHHhcCCC
Confidence 45567778899988888875311 1 2 3444 555 899999999999999999999999999
Q ss_pred cceEehhhhhhhHh-hHHHHHHHHHhhhhhhhcCccceEEEeCc-cC-CC-CCcCCcCchhhHhhhccCCCCCcccCCCc
Q 001713 725 SLVMWEAQFGDFAN-GAQVIFDQFVNSGESKWLRQSGLVVMLPH-GY-DG-QGPEHSSARLERFLQMSDDNPYVIPEMDS 800 (1021)
Q Consensus 725 ~lviwEaqFgDF~n-~Aq~~iDqfi~s~~~kw~~~~~lV~~lPh-G~-~G-~GpeHSs~r~Er~Lql~~e~~~~~~~ipg 800 (1021)
|++ --|+-|+. +| +||+-.+ -...+.++.+..-| |+ .| .|+.|.+. |- -..+..+|
T Consensus 75 Pfv---~tfa~F~s~Ra---~EQir~~---iay~~lnVKiv~t~~G~t~g~dG~sHq~~--ED--------iaimR~lp- 134 (312)
T COG3958 75 PFV---STFAAFLSRRA---WEQIRNS---IAYNNLNVKIVATHAGVTYGEDGSSHQAL--ED--------IAIMRGLP- 134 (312)
T ss_pred cee---echHHHHHHHH---HHHHHHH---hhhccCCeEEEEecCCcccCCCCccchhH--HH--------HHHHhcCC-
Confidence 999 89999999 99 6665443 22346788888878 66 45 89999876 33 23466787
Q ss_pred hhhhcccccCeEEEecCCHHHHHHHHHHHHhcCCCCcEEEEeeccccCCccccCCcccccccCCCCCCCCCCCcceEeec
Q 001713 801 TLRTQIQECNWQIVNVTTPANYFHVLRRQIHREFRKPLVVMSPKNLLRHKECKSNLSEFDDVQGHPGFDKQGTRFKRLIK 880 (1021)
Q Consensus 801 ~~~~~~~~~Nl~Vv~pstpad~fhlLrrqi~~~~~kPliv~~pK~Llr~~~~~s~~~e~~~~~~~~~~~~~~~~f~~vi~ 880 (1021)
||.|+.|+++-++..+++.... ++.|+-+. |.|.+..+. +.+- +-.|+
T Consensus 135 ---------n~~V~~P~D~v~~~~i~~~~~~--~~GP~Y~R----l~R~~~p~~-~~~~------------~~~F~---- 182 (312)
T COG3958 135 ---------NMTVIAPADAVETRAILDQIAD--YKGPVYMR----LGRGKVPVV-VDEG------------GYTFE---- 182 (312)
T ss_pred ---------CceEEccCcHHHHHHHHHHHHh--cCCCEEEE----ecCCCCCce-ecCC------------CceEe----
Confidence 8999999999999998887665 48999985 445443321 1111 13453
Q ss_pred CccccccCCCCCeEEEEeechhHHHHHHHHHHc--CCCcEEEEEecccCCCCHHHHHHHHHcCCCceEEEEecCCcccch
Q 001713 881 DQNEHSDLEEGIRRLILCSGKVYYELYEERKKH--SASDIAICRVEQLCPFPYDLVQRELKRYPNAEVVWSQEEPMNMGA 958 (1021)
Q Consensus 881 ~~~~~~~~~~g~~~~Iv~~Gk~~~~l~~a~~~~--~~~~v~ii~le~L~Pfp~~~i~~~l~k~~~~~~vwvqEe~~n~G~ 958 (1021)
+|++.+.++|.|+|||++|-|+..++++++.| ++++++||++-+|+|+|.++|.+..++++++ |.|+|....+|.
T Consensus 183 -iGka~vLrdG~D~tiiA~G~mv~~al~AA~~L~~~GIsa~Vi~m~tIKPiD~~~i~~~A~~t~~I--vT~EeHsi~GGl 259 (312)
T COG3958 183 -IGKANVLRDGSDLTIIATGVMVAEALEAAEILKKEGISAAVINMFTIKPIDEQAILKAARETGRI--VTAEEHSIIGGL 259 (312)
T ss_pred -ccceeEeecCCceEEEecCcchHHHHHHHHHHHhcCCCEEEEecCccCCCCHHHHHHHHhhcCcE--EEEecceeecch
Confidence 47788899999999999999999999999987 5899999999999999999999999999877 999999999999
Q ss_pred HhhHHHHHHHHHHhhccCCCCcEEEEcCCC
Q 001713 959 YTYIAPRLCTAMKAVDRGTMEDIKYVGRAP 988 (1021)
Q Consensus 959 ~~~v~~~i~~~~~~l~~~~~~~~~~vgr~~ 988 (1021)
|+-|+..+.+.. ..+++++|-|+
T Consensus 260 GsaVAEvlse~~-------p~~~~riGvp~ 282 (312)
T COG3958 260 GSAVAEVLSENG-------PTPMRRIGVPD 282 (312)
T ss_pred hHHHHHHHHhcC-------CcceEEecCCc
Confidence 999998887753 36899999875
No 47
>COG0021 TktA Transketolase [Carbohydrate transport and metabolism]
Probab=99.86 E-value=3.4e-19 Score=208.29 Aligned_cols=468 Identities=15% Similarity=0.185 Sum_probs=281.0
Q ss_pred CCcccccceeehHHHHhHHhcCCC-----CCCCcEEEEEeCccccCCccHHHHHHHhc---CCCCCCcccEEEEEEcCCc
Q 001713 364 SHLEAVDPVVIGKTRAKQYYSNDM-----DRTKNMAVLIHGDGSFAGQGVVYETLHLS---ALPNYSIGGTIHIVVNNQV 435 (1021)
Q Consensus 364 Shlg~~~PvA~G~A~A~q~~~~d~-----~~~~~v~v~~~GDgA~sGqG~v~EalnlA---~LP~y~~GGvI~Vv~NNq~ 435 (1021)
++||++++.|+|+|+|.++....- +--+.-++|++|||... +|+.||+..+| +|-+ +|.+..+|+|
T Consensus 116 GPLGQGianAVGmAlAe~~La~~fn~~g~~ivdh~tYvl~GDGclm-EGvs~EA~slAG~l~L~k-----LIvlyD~N~I 189 (663)
T COG0021 116 GPLGQGLANAVGMALAEKHLAALFNRPGFDIVDHYTYVLVGDGCLM-EGVSHEAASLAGHLKLGK-----LIVLYDSNDI 189 (663)
T ss_pred CccchhHHHHHHHHHHHHHHHhhhCCCCCccccceEEEEecCchHh-cccHHHHHHHHhhcCCCc-----EEEEEeCCCc
Confidence 669999999999999998865431 12246899999999999 99999999999 8887 9999999999
Q ss_pred ccccCCCCCcccccHHHHHhhcCccEE-EEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeeeccCCCCC-CCCCC-CC-
Q 001713 436 AFTTDPMSGRSSQYCTDVAKALDAPIF-HVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYRRFGHNE-IDEPS-FT- 511 (1021)
Q Consensus 436 g~tT~~~~~rs~~~~sd~Aka~g~p~~-~VdG~D~eAV~~a~~~A~e~rr~~~gPvlIe~vtYR~~GHne-~Ddp~-yt- 511 (1021)
.+..+.+.+. +.+...|.++|||.++ .+||+|++++..|+++|.. ...+|++|+|.|---+|-.. .+... .-
T Consensus 190 siDG~~~~~f-~ed~~~RfeAyGW~vi~~~DG~D~e~I~~Ai~~Ak~---~~dkPtlI~~kTiIG~Gsp~kegt~~~HGa 265 (663)
T COG0021 190 SIDGDTSLSF-TEDVAKRFEAYGWNVIRVIDGHDLEAIDKAIEEAKA---STDKPTLIIVKTIIGKGSPNKEGTHKVHGA 265 (663)
T ss_pred eeccCccccc-chhHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHh---cCCCCeEEEEEeeeecCCCCcCCCccccCC
Confidence 9999888765 6789999999999999 5699999999999988874 46799999999987777433 33332 22
Q ss_pred --CHHHHHHHHhC-----------CCHHHHHHHHHHHccCCCHHHHHHHHHHHHHH---HHHHHHHchhcCCCccchhhh
Q 001713 512 --QPKMYKIIRSH-----------PSSLEIYQNKLLECQHVTQEDINKIQEKVNRI---LSEEFVASKDYVPNRRDWLSA 575 (1021)
Q Consensus 512 --qp~ey~~i~~~-----------~dpi~~y~~~Li~~Gi~t~ee~~~i~~~~~~~---l~~a~~~A~~~~p~~~~~~~~ 575 (1021)
-+++.+..++. .++...|+ ...++|.-.+++++++-+.+++. +.+.++...+.. +..
T Consensus 266 pLg~~ev~~~k~~lgw~~~~F~vp~ev~~~~~-~~~~~g~~~~~~W~~~~~~y~~~~Pe~~~~~~r~~~~~------~p~ 338 (663)
T COG0021 266 PLGEEEVAAAKKALGWEPEPFEVPEEVYAAFR-AVEERGAKAEAAWNELFAAYKKKYPELAAEFERRLNGE------LPA 338 (663)
T ss_pred CCCHHHHHHHHHHhCCCCCceecCHHHHHHHH-HHhhhhhhHHHHHHHHHHHHHhhChHHHHHHHHHhccc------Cch
Confidence 23344433221 11222222 33334444444444444444332 222222222211 111
Q ss_pred hccCCCCcccc-cccCCCCC-ChHHHHHHHHhhhcCCCCCCcccchHHHHHHHHHHhhcCCCcCHHHHHHHHHHHHHhcC
Q 001713 576 YWSGFKSPEQL-SRIRNTGV-KPEILKNVGKAITTLPENFKPHRGVKKVYELRAQMIETGEGIDWALGEALAFATLLVEG 653 (1021)
Q Consensus 576 ~~~~~~~~~~~-~~~~~t~v-~~~~l~~i~~~~~~~P~~f~~h~~l~~~l~~R~~~~~~~~~idw~~AE~lA~~~ll~~~ 653 (1021)
.|......-+. .....|.. +.+.|..|++.+ |+
T Consensus 339 ~~~~~~~~~~~~~~~~ATR~as~~~L~~l~~~~---p~------------------------------------------ 373 (663)
T COG0021 339 NWAAFLPKFEANGKSIATRKASGKALNALAKKL---PE------------------------------------------ 373 (663)
T ss_pred hHHHhhhhhcccccccchHHHHHHHHHHHHhhC---cc------------------------------------------
Confidence 12111000000 00011110 111222222211 11
Q ss_pred CcEEEEcccCCCcccccccceeccCCcCceeccCCCcccccCCcccEEecCccchHHHHHHHHhhccCCC-CcceEehhh
Q 001713 654 NHVRLSGQDVERGTFSHRHSVLHDQETGEQYCPLDHVMMNQDAEMFTVSNSSLSEFGVLGFELGYSMENP-NSLVMWEAQ 732 (1021)
Q Consensus 654 ~~Vrl~GeDv~rGtF~~RHavl~dq~t~~~y~pL~~L~~~~~~g~~rV~nspLSE~~vlGfe~G~a~~g~-~~lviwEaq 732 (1021)
+.----|+..-++.. -+.. ..+.+ +++ ..|-+.-.+-|+++.+..-|+|+.|. +|..===..
T Consensus 374 --l~GGSADLa~Sn~T~-------~~~~------~~~~~-~~~-~gr~i~~GVREf~M~AimNGialhGg~~pyggTFlv 436 (663)
T COG0021 374 --LIGGSADLAPSNLTK-------ISGS------GDFSP-ENY-AGRYIHFGVREFAMAAIMNGIALHGGFIPYGGTFLV 436 (663)
T ss_pred --ccccCcccccCcccc-------cccc------CCCCC-CCC-CCCeeEEeeHHHHHHHHHHhHHHhcCceeecceehh
Confidence 100001221111100 0000 11110 111 34566779999999999999999977 776511234
Q ss_pred hhhhHhhHHHHHHHHHhhhhhhhcCccceEEEeCc---cCCCCCcCCcCchhhHhhhccCCCCCcccCCCchhhhccccc
Q 001713 733 FGDFANGAQVIFDQFVNSGESKWLRQSGLVVMLPH---GYDGQGPEHSSARLERFLQMSDDNPYVIPEMDSTLRTQIQEC 809 (1021)
Q Consensus 733 FgDF~n~Aq~~iDqfi~s~~~kw~~~~~lV~~lPh---G~~G~GpeHSs~r~Er~Lql~~e~~~~~~~ipg~~~~~~~~~ 809 (1021)
|.||+-.| | +---..+.|+++.+-| |....||+|.- +|- |+ .+..||
T Consensus 437 FsdY~r~A---i-------RlaALm~l~~~~V~THDSIgvGEDGPTHqP--iEq---La-----~LRaiP---------- 486 (663)
T COG0021 437 FSDYARPA---V-------RLAALMGLPVIYVFTHDSIGVGEDGPTHQP--VEQ---LA-----SLRAIP---------- 486 (663)
T ss_pred hHhhhhHH---H-------HHHHhcCCCeEEEEecCceecCCCCCCCCc--HHH---HH-----HhhccC----------
Confidence 44444444 2 2223356789988888 44578999975 453 33 377888
Q ss_pred CeEEEecCCHHHHHHHHHHHHhcCCCCcEEEEeeccccCCccccCCcccccccCCCCCCCCCCCcceEeecCccccccCC
Q 001713 810 NWQIVNVTTPANYFHVLRRQIHREFRKPLVVMSPKNLLRHKECKSNLSEFDDVQGHPGFDKQGTRFKRLIKDQNEHSDLE 889 (1021)
Q Consensus 810 Nl~Vv~pstpad~fhlLrrqi~~~~~kPliv~~pK~Llr~~~~~s~~~e~~~~~~~~~~~~~~~~f~~vi~~~~~~~~~~ 889 (1021)
|+.|.-|.++-+-....+.++.+ .+.|.++.....=|-.- ..+..+.+. .|.|. +.+.+ .
T Consensus 487 N~~V~RPaD~~Et~~aw~~Al~~-~~gPt~LiltRQnlp~l-~~t~~~~~~-----------kGaYv--l~~~~-----~ 546 (663)
T COG0021 487 NLSVIRPADANETAAAWKYALER-KDGPTALILTRQNLPVL-ERTDLEGVA-----------KGAYV--LKDSG-----G 546 (663)
T ss_pred CceeEecCChHHHHHHHHHHHhc-CCCCeEEEEecCCCCcc-CCCcccccc-----------CccEE--EeecC-----C
Confidence 69999999999999999999986 35677665442222111 011111111 13332 22211 1
Q ss_pred CCCeEEEEeechhHHHHHHHHHHc--CCCcEEEEEecccCCCCHHHH--HHHHHcCCCc-eEEEEecCCcccchHhhH
Q 001713 890 EGIRRLILCSGKVYYELYEERKKH--SASDIAICRVEQLCPFPYDLV--QRELKRYPNA-EVVWSQEEPMNMGAYTYI 962 (1021)
Q Consensus 890 ~g~~~~Iv~~Gk~~~~l~~a~~~~--~~~~v~ii~le~L~Pfp~~~i--~~~l~k~~~~-~~vwvqEe~~n~G~~~~v 962 (1021)
+..|+||++||.-+..+++++++| +++.|-||.+-....|+.+.- ++++-. .. .-.+.-|.-..+|.+.|+
T Consensus 547 ~~pd~iliAtGSEV~lAv~Aa~~L~~~~~~vrVVS~P~~~~fe~Q~~~Y~~~vL~--~~v~~rvaiEa~~~~~W~ky~ 622 (663)
T COG0021 547 EDPDVILIATGSEVELAVEAAKELEAEGIKVRVVSMPSFELFEKQDEEYRESVLP--GAVTARVAIEAGSALGWYKYV 622 (663)
T ss_pred CCCCEEEEecccHHHHHHHHHHHHHhcCCceEEEeccchHHHHcCCHHHHHhhcc--CCccceEEEEeccccchhhhc
Confidence 268999999999999999999987 458899999988888877433 344322 22 113555777778777655
No 48
>PRK05261 putative phosphoketolase; Provisional
Probab=99.86 E-value=8.6e-19 Score=212.96 Aligned_cols=526 Identities=15% Similarity=0.168 Sum_probs=291.1
Q ss_pred cCCccchHHHHHHHHHHHhhCCCC---c--EEEcCCcccHHHHH-HHhcC-----CC--------HHHHHHHhcCCCCCC
Q 001713 265 LEGGETLIPGMKEMFDRAADLGVE---S--IVIGMPHRGRLNVL-GNVVR-----KP--------LRQIFSEFSGGTRPV 325 (1021)
Q Consensus 265 ~eG~Ea~i~gl~~~l~~a~~~g~~---D--~vigm~HRgrln~L-a~v~g-----~~--------~~~if~Ef~G~~~~~ 325 (1021)
+.|+=+..||+..+.-..-.+.-+ | +|+|+-|=+-+.+- ....| .| ++.+|.+| +-.
T Consensus 48 ~~GHwGt~pgln~vyahln~li~~~~~~~~~V~g~GHg~p~~~a~~~L~Gs~~~~yp~is~d~~gl~~lfrqf-s~p--- 123 (785)
T PRK05261 48 LLGHWGTTPGLNFIYAHLNRLIRKYDLNMIYITGPGHGGPAMVANAYLEGTYSEIYPEITQDEEGMARLFKQF-SFP--- 123 (785)
T ss_pred cCCCCCCcHHHHHHHHHHHHHHhhcCCceEEEeCCCccHHHHHHHHHHcCCCcccCCCCCccHHHHHHHHHhc-cCC---
Confidence 477777777766554321111111 4 78888776555332 22245 22 44467766 211
Q ss_pred CCCCcccCCCCccccccccCCCCCCCCcceeeeeccccCCcccccceeehHHHHhHHhcCCCCCCCcEEEEEeCccccCC
Q 001713 326 DEVGLYTGTGDVKYHLGTSYDRPTRGGKRIHLSLVANPSHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAG 405 (1021)
Q Consensus 326 ~~G~~~gGsgDvkyHlg~s~~~~~~~g~~i~l~l~~npShlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDgA~sG 405 (1021)
|| +..|.. . .++ .+....+.||.++++|+|+|++.. + .+++|++|||++.
T Consensus 124 ------gg---~~sH~~-~---~tP-------Gi~~~~G~LG~gls~A~G~Al~~~----d-----~iv~~~vGDGE~E- 173 (785)
T PRK05261 124 ------GG---IPSHAA-P---ETP-------GSIHEGGELGYSLSHAYGAAFDNP----D-----LIVACVVGDGEAE- 173 (785)
T ss_pred ------CC---cCCCCC-C---CCC-------CeeeCCCchhhHHHHHHHHHHcCC----C-----CEEEEEECcCchh-
Confidence 11 124764 1 112 134456789999999999997543 2 7999999999998
Q ss_pred ccHH---HHHHHhcCCCCCCcccEEEEEEcCCcccccCCCCCcc-cccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHH
Q 001713 406 QGVV---YETLHLSALPNYSIGGTIHIVVNNQVAFTTDPMSGRS-SQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAE 481 (1021)
Q Consensus 406 qG~v---~EalnlA~LP~y~~GGvI~Vv~NNq~g~tT~~~~~rs-~~~~sd~Aka~g~p~~~VdG~D~eAV~~a~~~A~e 481 (1021)
+|.+ |++.+++ -.+..|-++-|+.+|+|+++++...++. ...+.+++++||++++.|||+|+++|+.++..|++
T Consensus 174 eG~lAa~W~~~~~~--~~~~~g~vLPIld~Ng~~Is~pt~~~~~~~e~l~~rf~g~Gw~~i~VDG~D~~av~~a~a~al~ 251 (785)
T PRK05261 174 TGPLATSWHSNKFL--NPATDGAVLPILHLNGYKIANPTILARISDEELEALFRGYGYEPYFVEGDDPADMHQEMAAALD 251 (785)
T ss_pred hhhhHHHhhhhhhc--ccccCCCEEEEEEecCCcCCCCccccccCcHhHHHHHHHCCCeeEEECCCCHHHHHHHHHHHHH
Confidence 9984 8877776 1122333888888999999999887654 47899999999999999999999999999887776
Q ss_pred HHHc-----------c---CCCE--EEEEeeeccCCC-CCCCC----CCCC---CHHHHHHHHhCCCHHHHHHHHHHHcc
Q 001713 482 WRQT-----------F---HSDV--VVDLVCYRRFGH-NEIDE----PSFT---QPKMYKIIRSHPSSLEIYQNKLLECQ 537 (1021)
Q Consensus 482 ~rr~-----------~---~gPv--lIe~vtYR~~GH-ne~Dd----p~yt---qp~ey~~i~~~~dpi~~y~~~Li~~G 537 (1021)
++-+ + .+|. +|.+.|-.-+|- ++.|. .+++ -|.--. +..++-++.+.++|...+
T Consensus 252 ~~i~~i~~iq~~Ar~~~~~~~P~wp~Ii~rT~kG~g~p~~~dg~~~eGs~raHqvPL~~~--~~~~~~~~~L~~wl~sy~ 329 (785)
T PRK05261 252 TAIEEIRAIQKEAREGGDTTRPRWPMIVLRTPKGWTGPKEVDGKPIEGSWRAHQVPLANV--RDNPEHLDLLEDWLRSYR 329 (785)
T ss_pred HHHHHHHHHHHHHHhCCCCCCCCceEEEEECCccCCCCcccCCcccCCCchhhcCCCCCc--ccCHHHHHHHHHHhhcCC
Confidence 5543 4 4888 999999875552 11221 1111 010000 001112222333332111
Q ss_pred CCCHHHH----HHHHHHHHHHHHHHHHHchhcCCCccchhhhhccCCCCcccccccCCCCCChHHHHHHHHhhhcCCCCC
Q 001713 538 HVTQEDI----NKIQEKVNRILSEEFVASKDYVPNRRDWLSAYWSGFKSPEQLSRIRNTGVKPEILKNVGKAITTLPENF 613 (1021)
Q Consensus 538 i~t~ee~----~~i~~~~~~~l~~a~~~A~~~~p~~~~~~~~~~~~~~~~~~~~~~~~t~v~~~~l~~i~~~~~~~P~~f 613 (1021)
.+|+ .++..++++.+.+......+. |.... ...+..+.-|+ ++.. ++..-+.+.
T Consensus 330 ---p~elF~~~g~l~~~~~~l~p~g~~r~~~~-P~ang--~~~~~~l~lp~--------------~~~~--~~~~~~~g~ 387 (785)
T PRK05261 330 ---PEELFDEDGRLKPELAALAPKGDRRMGAN-PHANG--GLLLRDLRLPD--------------FRDY--AVPVGKPGA 387 (785)
T ss_pred ---hhhhcCCCCchhHHHHHhccCchhhhcCC-chhcC--CcCccccCCCc--------------hHhh--cccccCCCc
Confidence 1111 112222222111111111110 10000 00000000000 0000 000000000
Q ss_pred CcccchHHHHHHHHHHhhcCCCcCHHHHHHHHHHHHHhcCCc-EEEEcccCCC-----cccccccceeccCCcCceeccC
Q 001713 614 KPHRGVKKVYELRAQMIETGEGIDWALGEALAFATLLVEGNH-VRLSGQDVER-----GTFSHRHSVLHDQETGEQYCPL 687 (1021)
Q Consensus 614 ~~h~~l~~~l~~R~~~~~~~~~idw~~AE~lA~~~ll~~~~~-Vrl~GeDv~r-----GtF~~RHavl~dq~t~~~y~pL 687 (1021)
... .+-. +--..+..++..+++ .|++|-|--. ++|.+ |++.|.--
T Consensus 388 ~~~-------------------~atr-~~g~~l~~v~~~np~~frvf~pDe~~SNrl~~~f~~---------t~r~~~~~ 438 (785)
T PRK05261 388 VMA-------------------EATR-VLGKYLRDVIKLNPDNFRIFGPDETASNRLQAVFEV---------TDRQWMAE 438 (785)
T ss_pred ccc-------------------ccHH-HHHHHHHHHHHhCCCceEEEcCCcchhhccHhHHhh---------hccccccc
Confidence 000 0000 012345667777788 8999999642 77775 43333110
Q ss_pred ---C--CcccccCCcccEEecCccchHHHHHHHHhhccCCCCcceEehhhhhhhHhhHHHHHHHHH----hhhhhhhcC-
Q 001713 688 ---D--HVMMNQDAEMFTVSNSSLSEFGVLGFELGYSMENPNSLVMWEAQFGDFANGAQVIFDQFV----NSGESKWLR- 757 (1021)
Q Consensus 688 ---~--~L~~~~~~g~~rV~nspLSE~~vlGfe~G~a~~g~~~lviwEaqFgDF~n~Aq~~iDqfi----~s~~~kw~~- 757 (1021)
. .+. -..||+. .|||.++-|+.-||++.|..++. +-|--|+.----++.|++ .+.+..|.+
T Consensus 439 ~~~~d~~~~-----~~Grvie-~LsEh~~~g~~~Gy~LtG~~~~~---~sYeaF~~ivd~m~~q~~kw~r~~~~~~wr~~ 509 (785)
T PRK05261 439 ILPYDEHLA-----PDGRVME-VLSEHLCEGWLEGYLLTGRHGFF---SSYEAFIHIVDSMFNQHAKWLKVAREIPWRKP 509 (785)
T ss_pred cCCcccccC-----CCCCeee-eecHHHHHHHHHHHHhcCCCcce---ecHHHHHHHHHHHHHHHHHHHHHHhhcccCCC
Confidence 1 222 1368999 99999999999999999999987 666666522112244431 123344443
Q ss_pred ccceEEEeCc-cC--CCCCcCCcCc-hhhHhhhccCCCCCcccCCCchhhhcccccCeEEEecCCHHHHHHHHHHHHhcC
Q 001713 758 QSGLVVMLPH-GY--DGQGPEHSSA-RLERFLQMSDDNPYVIPEMDSTLRTQIQECNWQIVNVTTPANYFHVLRRQIHRE 833 (1021)
Q Consensus 758 ~~~lV~~lPh-G~--~G~GpeHSs~-r~Er~Lql~~e~~~~~~~ipg~~~~~~~~~Nl~Vv~pstpad~fhlLrrqi~~~ 833 (1021)
-+.|.+++-| .+ +..|++|..- .+|-++.+-+ .|++|.-|.+........+.++++
T Consensus 510 ~~sLn~l~Ts~~~~qghNG~THQ~Pg~ie~l~~~r~-------------------~~~rV~rPaDaNe~laa~~~al~s- 569 (785)
T PRK05261 510 IPSLNYLLTSHVWRQDHNGFSHQDPGFIDHVANKKP-------------------DVIRVYLPPDANTLLAVADHCLRS- 569 (785)
T ss_pred CcceeEEeecceeecCCCCCCCCCchHHHHHHhcCC-------------------CcceEEeCCCHHHHHHHHHHHHHh-
Confidence 3556666665 55 3579999883 3444433222 379999999998888888888875
Q ss_pred CCCcEEEEeeccccCCccccCC-cccccccCCCCCCCCCCCcceEeecCccccccCCCCCeEEEEeechhHHH-HHHHHH
Q 001713 834 FRKPLVVMSPKNLLRHKECKSN-LSEFDDVQGHPGFDKQGTRFKRLIKDQNEHSDLEEGIRRLILCSGKVYYE-LYEERK 911 (1021)
Q Consensus 834 ~~kPliv~~pK~Llr~~~~~s~-~~e~~~~~~~~~~~~~~~~f~~vi~~~~~~~~~~~g~~~~Iv~~Gk~~~~-l~~a~~ 911 (1021)
.++|.+|+.+|.=+-.-...+. .+.+.. |-+. +...+. ......|+||+|+|..+.. +++|++
T Consensus 570 ~~~p~~IvlsRQ~lp~~~~~~~a~~~~~k-----------Gayi--~~~a~~--~~~~~pDvvL~atGsev~leAlaAa~ 634 (785)
T PRK05261 570 RNYINVIVAGKQPRPQWLSMDEARKHCTK-----------GLGI--WDWASN--DDGEEPDVVLACAGDVPTLETLAAAD 634 (785)
T ss_pred CCCCEEEEEeCCCCcccCChHHHHHhccC-----------ceEE--EEeccC--CCCCCCCEEEEEeCcHhhHHHHHHHH
Confidence 4789999888743321100000 011221 3322 111000 0112359999999998887 888887
Q ss_pred Hc--C--CCcEEEEEe
Q 001713 912 KH--S--ASDIAICRV 923 (1021)
Q Consensus 912 ~~--~--~~~v~ii~l 923 (1021)
.| . ++.|.||.+
T Consensus 635 ~L~~~~pgikvRVVSv 650 (785)
T PRK05261 635 LLREHFPDLKIRVVNV 650 (785)
T ss_pred HHHhhCCCCCEEEEEe
Confidence 66 2 577777776
No 49
>cd07033 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and the beta subunits of the E1 component of the human pyruvate dehydrogenase complex (E1- PDHc), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included
Probab=99.77 E-value=2.5e-18 Score=174.29 Aligned_cols=151 Identities=13% Similarity=0.186 Sum_probs=126.9
Q ss_pred HHHHHHHHHhcCCcEEEEcccCCCcccccccceeccCCcCceeccCCCcccccCCcccEEecCccchHHHHHHHHhhccC
Q 001713 642 EALAFATLLVEGNHVRLSGQDVERGTFSHRHSVLHDQETGEQYCPLDHVMMNQDAEMFTVSNSSLSEFGVLGFELGYSME 721 (1021)
Q Consensus 642 E~lA~~~ll~~~~~Vrl~GeDv~rGtF~~RHavl~dq~t~~~y~pL~~L~~~~~~g~~rV~nspLSE~~vlGfe~G~a~~ 721 (1021)
-+.++..++++++++.+.|+|+..++ . | +++. +++ +.|++|+||+|.+++|.+.|+|+.
T Consensus 3 ~~~~l~~~~~~~~~~v~~~~Dl~~~~--~---------~-------~~~~--~~~-p~r~i~~gIaE~~~vg~A~GlA~~ 61 (156)
T cd07033 3 FGEALLELAKKDPRIVALSADLGGST--G---------L-------DKFA--KKF-PDRFIDVGIAEQNMVGIAAGLALH 61 (156)
T ss_pred HHHHHHHHHhhCCCEEEEECCCCCCC--C---------c-------HHHH--HhC-CCCeEEeChhHHHHHHHHHHHHHC
Confidence 45678889999999999999997532 2 3 6777 777 789999999999999999999999
Q ss_pred CCCcceEehhhhhhhHhhHHHHHHHHHhhhhhhhcCccceEEEeCcc-CC--CCCcCCcCchhhHhhhccCCCCCcccCC
Q 001713 722 NPNSLVMWEAQFGDFANGAQVIFDQFVNSGESKWLRQSGLVVMLPHG-YD--GQGPEHSSARLERFLQMSDDNPYVIPEM 798 (1021)
Q Consensus 722 g~~~lviwEaqFgDF~n~Aq~~iDqfi~s~~~kw~~~~~lV~~lPhG-~~--G~GpeHSs~r~Er~Lql~~e~~~~~~~i 798 (1021)
|.+|++ |.+ .+|...| +||+.+.. .+ .+.|++++.+|| +. +.|++|++--.+.+ +.++
T Consensus 62 G~~pi~--~~~-~~f~~ra---~dqi~~~~-a~--~~~pv~~~~~~~g~~~~~~G~tH~~~~~~a~----------~~~i 122 (156)
T cd07033 62 GLKPFV--STF-SFFLQRA---YDQIRHDV-AL--QNLPVKFVGTHAGISVGEDGPTHQGIEDIAL----------LRAI 122 (156)
T ss_pred CCeEEE--EEC-HHHHHHH---HHHHHHHH-hc--cCCCeEEEEECCcEecCCCCcccchHHHHHH----------hcCC
Confidence 999965 988 9999999 88877432 23 359999999995 43 58999988657776 5688
Q ss_pred CchhhhcccccCeEEEecCCHHHHHHHHHHHHhcCCCCcEEEEeec
Q 001713 799 DSTLRTQIQECNWQIVNVTTPANYFHVLRRQIHREFRKPLVVMSPK 844 (1021)
Q Consensus 799 pg~~~~~~~~~Nl~Vv~pstpad~fhlLrrqi~~~~~kPliv~~pK 844 (1021)
|| ++|+.|++|.|++.+|+.++.. ++|++|..||
T Consensus 123 Pg----------~~v~~Ps~~~~~~~ll~~a~~~--~~P~~irl~~ 156 (156)
T cd07033 123 PN----------MTVLRPADANETAAALEAALEY--DGPVYIRLPR 156 (156)
T ss_pred CC----------CEEEecCCHHHHHHHHHHHHhC--CCCEEEEeeC
Confidence 86 9999999999999999999987 6799998764
No 50
>smart00861 Transket_pyr Transketolase, pyrimidine binding domain. Transketolase (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Hansenula polymorpha, there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates.
Probab=99.75 E-value=1.5e-17 Score=169.92 Aligned_cols=163 Identities=26% Similarity=0.312 Sum_probs=126.2
Q ss_pred CHHHHHHHHHHHHHhcCC-cEEEEcccCCCcccccccceeccCCcCceeccCCCcccccCCcccEEecCccchHHHHHHH
Q 001713 637 DWALGEALAFATLLVEGN-HVRLSGQDVERGTFSHRHSVLHDQETGEQYCPLDHVMMNQDAEMFTVSNSSLSEFGVLGFE 715 (1021)
Q Consensus 637 dw~~AE~lA~~~ll~~~~-~Vrl~GeDv~rGtF~~RHavl~dq~t~~~y~pL~~L~~~~~~g~~rV~nspLSE~~vlGfe 715 (1021)
.|..+...++..++++++ +|+++|+|+..+++..++.+..+++. + ++.|++|++|+|++++|++
T Consensus 1 ~~~~~~~~~l~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~~---------~------~~~R~~~~gIaE~~~vg~a 65 (168)
T smart00861 1 ATRKAFGEALAELAERDPERVVVSGADVGGSTGLDRGGVFPDTKG---------L------GPGRVIDTGIAEQAMVGFA 65 (168)
T ss_pred CHHHHHHHHHHHHHhhCCCcEEEEehhhCcCcCCCcCCccCCCCC---------C------CCccEEEcCcCHHHHHHHH
Confidence 366788899999999955 99999999988776665544444332 2 4678999999999999999
Q ss_pred HhhccCCCCcceEehhhhhhhHhhHHHHHHHHHhhhhhhhcCccceEEEeCccC-CCC-CcCCcCchhhHhhhccCCCCC
Q 001713 716 LGYSMENPNSLVMWEAQFGDFANGAQVIFDQFVNSGESKWLRQSGLVVMLPHGY-DGQ-GPEHSSARLERFLQMSDDNPY 793 (1021)
Q Consensus 716 ~G~a~~g~~~lviwEaqFgDF~n~Aq~~iDqfi~s~~~kw~~~~~lV~~lPhG~-~G~-GpeHSs~r~Er~Lql~~e~~~ 793 (1021)
.|+|+.|.+|++ + .|..|+..| .||+....-.+ ..++|++.+.|+ .|. ||+|++...+.+
T Consensus 66 ~GlA~~G~~pi~--~-~~~~f~~~a---~~~~~~~~~~~---~~~~v~~~~~g~~~g~~G~tH~~~~~~~~--------- 127 (168)
T smart00861 66 AGLALAGLRPVV--A-IFFTFFDRA---KDQIRSDGAMG---RVPVVVRHDSGGGVGEDGPTHHSQEDEAL--------- 127 (168)
T ss_pred HHHHHcCCCcEE--E-eeHHHHHHH---HHHHHHhCccc---CCCEEEEecCccccCCCCccccchhHHHH---------
Confidence 999999998866 4 555566688 66665543333 689999997644 555 999998888887
Q ss_pred cccCCCchhhhcccccCeEEEecCCHHHHHHHHHHHHhcCCCCc-EEEEeec
Q 001713 794 VIPEMDSTLRTQIQECNWQIVNVTTPANYFHVLRRQIHREFRKP-LVVMSPK 844 (1021)
Q Consensus 794 ~~~~ipg~~~~~~~~~Nl~Vv~pstpad~fhlLrrqi~~~~~kP-liv~~pK 844 (1021)
+.++|+ ++|+.|++|.|++++|+.++.+ .++| +|++++|
T Consensus 128 -~~~iP~----------~~v~~P~~~~e~~~~l~~a~~~-~~~p~~i~~~~~ 167 (168)
T smart00861 128 -LRAIPG----------LKVVAPSDPAEAKGLLRAAIRR-DDGPPVIRLERK 167 (168)
T ss_pred -HhcCCC----------cEEEecCCHHHHHHHHHHHHhC-CCCCEEEEecCC
Confidence 558885 9999999999999999999964 2457 6665554
No 51
>cd02007 TPP_DXS Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis. Terpeniods are plant natural products with important pharmaceutical activity. DXS catalyzes a transketolase-type condensation of pyruvate with D-glyceraldehyde-3-phosphate to form 1-deoxy-D-xylulose-5-phosphate (DXP) and carbon dioxide. The formation of DXP leads to the formation of the terpene precursor IPP (isopentyl diphosphate) and to the formation of thiamine (vitamin B1) and pyridoxal (vitamin B6).
Probab=99.69 E-value=1e-16 Score=168.36 Aligned_cols=119 Identities=18% Similarity=0.295 Sum_probs=105.0
Q ss_pred cccCCcccccceeehHHHHhHHhcCCCCCCCcEEEEEeCccccCCccHHHHHHHhc---CCCCCCcccEEEEEEcCCccc
Q 001713 361 ANPSHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS---ALPNYSIGGTIHIVVNNQVAF 437 (1021)
Q Consensus 361 ~npShlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDgA~sGqG~v~EalnlA---~LP~y~~GGvI~Vv~NNq~g~ 437 (1021)
...++||.++|+|+|+|+|.++++.+ ..++|++|||+++ ||.+||+|++| ++| +|+||.||++++
T Consensus 72 ~~~G~lG~gl~~A~G~Ala~k~~~~~-----~~vv~~~GDG~~~-eG~~~Eal~~A~~~~~~------li~vvdnN~~~~ 139 (195)
T cd02007 72 FGTGHSSTSISAALGMAVARDLKGKK-----RKVIAVIGDGALT-GGMAFEALNNAGYLKSN------MIVILNDNEMSI 139 (195)
T ss_pred ECCCchhhhHHHHHHHHHHHHHhCCC-----CeEEEEEcccccc-cChHHHHHHHHHHhCCC------EEEEEECCCccc
Confidence 35688999999999999999987654 7899999999999 99999999999 778 999999999999
Q ss_pred ccCCCCCcccccHHHHHhhcCccEEE-EeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeeeccCC
Q 001713 438 TTDPMSGRSSQYCTDVAKALDAPIFH-VNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYRRFG 501 (1021)
Q Consensus 438 tT~~~~~rs~~~~sd~Aka~g~p~~~-VdG~D~eAV~~a~~~A~e~rr~~~gPvlIe~vtYR~~G 501 (1021)
+++.. ...++++++|+.+.. |||+|++++.+|++.|. +.++|++|++.|++-.|
T Consensus 140 ~~~~~------~~~~~~~a~G~~~~~~vdG~d~~~l~~a~~~a~----~~~~P~~I~~~T~kg~g 194 (195)
T cd02007 140 SPNVG------TPGNLFEELGFRYIGPVDGHNIEALIKVLKEVK----DLKGPVLLHVVTKKGKG 194 (195)
T ss_pred CCCCC------CHHHHHHhcCCCccceECCCCHHHHHHHHHHHH----hCCCCEEEEEEEecccC
Confidence 98764 467888899999886 99999999998887764 45799999999988665
No 52
>cd02012 TPP_TK Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates. In heterotrophic organisms, TK provides a link between glycolysis and the pentose phosphate pathway and provides precursors for nucleotide, aromatic amino acid and vitamin biosynthesis. In addition, the enzyme plays a central role in the Calvin cycle in plants. Typically, TKs are homodimers. They require TPP and divalent cations, such as magnesium ions, for activity.
Probab=99.63 E-value=9.5e-16 Score=167.26 Aligned_cols=130 Identities=19% Similarity=0.201 Sum_probs=115.5
Q ss_pred cccCCcccccceeehHHHHhHHhcCCCCCCCcEEEEEeCccccCCccHHHHHHHhc---CCCCCCcccEEEEEEcCCccc
Q 001713 361 ANPSHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS---ALPNYSIGGTIHIVVNNQVAF 437 (1021)
Q Consensus 361 ~npShlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDgA~sGqG~v~EalnlA---~LP~y~~GGvI~Vv~NNq~g~ 437 (1021)
...++||.++|.|+|+|+|.++...+ ..++|+.|||++. +|.++|+|++| +||+ +|+|+.||.|++
T Consensus 102 ~~~GslG~gl~~avG~Ala~~~~~~~-----~~v~~i~GDG~~~-~G~~~eal~~a~~~~l~~-----li~vvdnN~~~~ 170 (255)
T cd02012 102 VTTGSLGQGLSVAVGMALAEKLLGFD-----YRVYVLLGDGELQ-EGSVWEAASFAGHYKLDN-----LIAIVDSNRIQI 170 (255)
T ss_pred eCCcchhhHHHHHHHHHHHHHHhCCC-----CEEEEEECccccc-ccHHHHHHHHHHHcCCCc-----EEEEEECCCccc
Confidence 34478999999999999999987654 7899999999998 99999999999 9987 999999999999
Q ss_pred ccCCCCCcccccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeeeccCCCCC
Q 001713 438 TTDPMSGRSSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYRRFGHNE 504 (1021)
Q Consensus 438 tT~~~~~rs~~~~sd~Aka~g~p~~~VdG~D~eAV~~a~~~A~e~rr~~~gPvlIe~vtYR~~GHne 504 (1021)
+++........++.++++++|++++.|||+|++++..|+++|.+. .++|++|++.|.+-.||..
T Consensus 171 ~~~~~~~~~~~~~~~~~~a~G~~~~~v~G~d~~~l~~al~~a~~~---~~~P~~I~~~t~kg~g~~~ 234 (255)
T cd02012 171 DGPTDDILFTEDLAKKFEAFGWNVIEVDGHDVEEILAALEEAKKS---KGKPTLIIAKTIKGKGVPF 234 (255)
T ss_pred cCcHhhccCchhHHHHHHHcCCeEEEECCCCHHHHHHHHHHHHHc---CCCCEEEEEEeecccccCc
Confidence 887655555678899999999999999999999999999888742 2789999999999999984
No 53
>TIGR00759 aceE pyruvate dehydrogenase E1 component, homodimeric type. WARNING: This family is classified as subfamily rather than equivalog because it includes a counterexample from Pseudomonas putida, MdeB, that is active as an E1 component of an alpha-ketoglutarate dehydrogenase complex rather than a pyruvate dehydrogase complex. The second pyruvate dehydrogenase complex E1 protein from Alcaligenes eutrophus, PdhE, complements an aceE mutant of E. coli but is not part of a pyruvate dehydrogenase complex operon, is more similar to the Pseudomonas putida MdeB than to E. coli AceE, and may have also have a different primary specificity.
Probab=99.58 E-value=1.8e-11 Score=149.96 Aligned_cols=465 Identities=14% Similarity=0.190 Sum_probs=259.4
Q ss_pred cCCcccccceeehHHHHhHHhcCC--CCCCCcEEEEEeCccccCCccHHHHHHHhc---CCCCCCcccEEEEEEcCCccc
Q 001713 363 PSHLEAVDPVVIGKTRAKQYYSND--MDRTKNMAVLIHGDGSFAGQGVVYETLHLS---ALPNYSIGGTIHIVVNNQVAF 437 (1021)
Q Consensus 363 pShlg~~~PvA~G~A~A~q~~~~d--~~~~~~v~v~~~GDgA~sGqG~v~EalnlA---~LP~y~~GGvI~Vv~NNq~g~ 437 (1021)
.+.||.++++|+|+|++.++.... .+..+.-++|++|||.+. ||.+||++.+| +|.+ +|+||.+|.+.+
T Consensus 188 TGSLG~Gls~AvG~Ala~Kyl~~rg~~~~~~~rVyvllGDGEld-EG~swEA~~~Aa~~kLdN-----Li~IVD~N~~ql 261 (885)
T TIGR00759 188 TVSMGLGPINAIYQARFMKYLENRGLKDTGDQKVWAFLGDGEMD-EPESKGAITFAAREKLDN-----LTFVINCNLQRL 261 (885)
T ss_pred CCCccHHHHHHHHHHHHHHHHHhhccCCCCCceEEEEEcchhhc-cHHHHHHHHHHHHhCCCC-----EEEEEeCCCCcc
Confidence 355999999999999999973221 122346799999999999 99999999999 9998 999999999999
Q ss_pred ccCCCCCcc-cccHHHHHhhcCccEEEE----------------------------------------------------
Q 001713 438 TTDPMSGRS-SQYCTDVAKALDAPIFHV---------------------------------------------------- 464 (1021)
Q Consensus 438 tT~~~~~rs-~~~~sd~Aka~g~p~~~V---------------------------------------------------- 464 (1021)
..+.+..-. ...+.++.+++||.++.|
T Consensus 262 DG~v~~~~~i~e~le~~F~a~GW~Vi~V~wg~~wd~lf~~d~~g~L~~~m~~~~dg~yq~~~~~~Ga~~R~~ffg~~~~l 341 (885)
T TIGR00759 262 DGPVRGNGKIIQELESLFRGAGWNVIKVLWGSEWDALLARDTSGVLVKLMNETVDGDYQTYKAKDGAYVREHFFNRTPEL 341 (885)
T ss_pred CCccccccccchhHHHHHHhcCCEEEEEecCccchHhhcCCCccHHHHHHHhcccHHHHHHhhcchHHHHHHhccccHHH
Confidence 988775333 457889999999999999
Q ss_pred -----------------eCCCHHHHHHHHHHHHHHHHccCCCEEEEEeeeccCCCCCCCCCCCCCHHHHHHHHhCCCHHH
Q 001713 465 -----------------NGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYRRFGHNEIDEPSFTQPKMYKIIRSHPSSLE 527 (1021)
Q Consensus 465 -----------------dG~D~eAV~~a~~~A~e~rr~~~gPvlIe~vtYR~~GHne~Ddp~ytqp~ey~~i~~~~dpi~ 527 (1021)
+|+|+++|++|.+.|.+ ..++|++|-+.|-.-+|-...-+..- .+ |.
T Consensus 342 ~~lv~~~sD~~i~~l~rgGHD~~~I~~A~~~A~~---~~grPTvIlA~TvKG~G~~~~~e~~n-------~~--H~---- 405 (885)
T TIGR00759 342 KALVADMSDADIWALNRGGHDPRKVYAAYAAAQE---HKGQPTVILAKTIKGYGMGDAAESRN-------TA--HQ---- 405 (885)
T ss_pred HHHhhccchhhhhhccCCCCCHHHHHHHHHHHHh---CCCCCEEEEEeeeecCCCChhhCCCc-------cc--cc----
Confidence 59999999999988875 23589999999999888762211110 01 10
Q ss_pred HHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHchhcCCCccchhhhhccCCCCcccccccCCCCCChHHHHHHHHhhh
Q 001713 528 IYQNKLLECQHVTQEDINKIQEKVNRILSEEFVASKDYVPNRRDWLSAYWSGFKSPEQLSRIRNTGVKPEILKNVGKAIT 607 (1021)
Q Consensus 528 ~y~~~Li~~Gi~t~ee~~~i~~~~~~~l~~a~~~A~~~~p~~~~~~~~~~~~~~~~~~~~~~~~t~v~~~~l~~i~~~~~ 607 (1021)
.+.++++++++.++.+.--+. .++.-..+|..+... ....+.|.+-.+++.
T Consensus 406 --------~k~l~~e~l~~~r~~~g~~~~------------d~~~~~~~~~~~~~~---------s~e~~y~~~rr~~Lg 456 (885)
T TIGR00759 406 --------VKKLEVDALKNFRDRFELPLS------------DAQVEELPYYHPGEG---------SPEVRYLLARRQALG 456 (885)
T ss_pred --------CCCCCHHHHHHHHHHcCCCCC------------hhHhccCCCcCCCCC---------CHHHHHHHHHHHHhC
Confidence 023444555444444321110 000001122111000 000111111111111
Q ss_pred -cCCCCCCc-----ccchHHHHHHHHHHhhcCCCcCHHHHHHHHHHHHHh----c---CCcEEEEcccCCC---------
Q 001713 608 -TLPENFKP-----HRGVKKVYELRAQMIETGEGIDWALGEALAFATLLV----E---GNHVRLSGQDVER--------- 665 (1021)
Q Consensus 608 -~~P~~f~~-----h~~l~~~l~~R~~~~~~~~~idw~~AE~lA~~~ll~----~---~~~Vrl~GeDv~r--------- 665 (1021)
.+|..-.. -|.+. .++.-.+- .+++.+ +=.+||..+|. + +.+|+=+=-|+.|
T Consensus 457 g~~p~R~~~~~~l~vP~l~-~~~~~~~~-~~~~~~----STt~afvr~l~~L~r~~~~g~riVpi~pDeartfgm~g~f~ 530 (885)
T TIGR00759 457 GYLPARRTFAEHLTVPALE-FFGALLKG-SGEREV----STTMAFVRILNKLLKDKEIGKRIVPIVPDEARTFGMEGLFR 530 (885)
T ss_pred CCCCCcCCCCCCCCCCCch-hhHHHhcC-CCCCCc----cHHHHHHHHHHHHhcCcccccceeecCCCccccCChHHhhc
Confidence 01111000 11111 11110000 111222 23445554443 2 5567777778764
Q ss_pred --cccccccceeccCCcCceeccCCC--cccccCCcccEEecCccchHHHHH----HHHhhccCCCC--cceEehhhhhh
Q 001713 666 --GTFSHRHSVLHDQETGEQYCPLDH--VMMNQDAEMFTVSNSSLSEFGVLG----FELGYSMENPN--SLVMWEAQFGD 735 (1021)
Q Consensus 666 --GtF~~RHavl~dq~t~~~y~pL~~--L~~~~~~g~~rV~nspLSE~~vlG----fe~G~a~~g~~--~lviwEaqFgD 735 (1021)
|.|+. .|..|.|-+. +..=..-...+++--.|+|.+.++ ++.-||..|.. |+-|+=-|||
T Consensus 531 ~~gIy~~---------~gq~y~p~d~~~~~~y~e~~~Gq~le~GI~E~g~~~~~~aagtsys~~g~~miP~yi~YsmFg- 600 (885)
T TIGR00759 531 QIGIYSP---------HGQTYTPVDADSLLAYKESKDGQILQEGINEAGAMASWIAAATSYATHGEPMIPFYIYYSMFG- 600 (885)
T ss_pred ccCccCC---------CCccCCccchhhhhhcccCCCCcchhhhhhhHHHHHHHHHHHhHHhhCCCeeeeeeEeecccc-
Confidence 77776 6777888643 110011234679999999998654 44556666654 5556666662
Q ss_pred hHhhHHHHHHHHHhhhhhhhcCccceEEEeCccC---CCCCcCCcCchhhHhhhccCCCCCcccCCCchhhhcccccCeE
Q 001713 736 FANGAQVIFDQFVNSGESKWLRQSGLVVMLPHGY---DGQGPEHSSARLERFLQMSDDNPYVIPEMDSTLRTQIQECNWQ 812 (1021)
Q Consensus 736 F~n~Aq~~iDqfi~s~~~kw~~~~~lV~~lPhG~---~G~GpeHSs~r~Er~Lql~~e~~~~~~~ipg~~~~~~~~~Nl~ 812 (1021)
-|-+-|.+.+.+-+ +--++++=.|.|- -|-|-+|.+. ..-|. ...+| |..
T Consensus 601 ----fqR~gD~~waa~d~---~argfl~g~taGrtTL~gEGlqHqdg--~s~~~--------~~~~P----------~~~ 653 (885)
T TIGR00759 601 ----FQRIGDLCWAAADQ---RARGFLLGATAGRTTLNGEGLQHEDG--HSLLQ--------AATIP----------NCI 653 (885)
T ss_pred ----ccchHHHHHHHhhh---cCCceEeccCCCcccCCCccccCccc--cchHH--------HhcCC----------Cce
Confidence 22234544433211 1235555556665 1555566444 11111 13556 599
Q ss_pred EEecCCHHHHHHHHHHHHhcCCCCcEEEEeeccccCCccccCCc-ccccccCCCCCCCCCCCcceEeecCccccccCCCC
Q 001713 813 IVNVTTPANYFHVLRRQIHREFRKPLVVMSPKNLLRHKECKSNL-SEFDDVQGHPGFDKQGTRFKRLIKDQNEHSDLEEG 891 (1021)
Q Consensus 813 Vv~pstpad~fhlLrrqi~~~~~kPliv~~pK~Llr~~~~~s~~-~e~~~~~~~~~~~~~~~~f~~vi~~~~~~~~~~~g 891 (1021)
-.-|+-..+.-.+|+..+++-++.--=+|.--++|..+...... +...+ |.-| |-|.- .+.+ ....+
T Consensus 654 ~ydPafa~Ela~i~~~g~~rm~~~~~~v~yylt~~ne~~~qp~~p~~~~e-----gIlk--G~Y~l--~~~~---~~~~~ 721 (885)
T TIGR00759 654 AYDPAFAYEVAVIMEDGLRRMYGEQEDVFYYVTVMNENYVQPPMPEGAEE-----GILK--GLYRF--ETST---EEKAK 721 (885)
T ss_pred eecCchHHHHHHHHHHHHHHHhhCCCCEEEEEEecCCCCCCCCCCcchHH-----hHHh--Cceec--ccCC---CCCCC
Confidence 99999999999999988886333211111111222111111100 00000 0001 21210 1110 01113
Q ss_pred CeEEEEeechhHHHHHHHHHHcC---CCcEEEEEecccCCCCHHH
Q 001713 892 IRRLILCSGKVYYELYEERKKHS---ASDIAICRVEQLCPFPYDL 933 (1021)
Q Consensus 892 ~~~~Iv~~Gk~~~~l~~a~~~~~---~~~v~ii~le~L~Pfp~~~ 933 (1021)
.++.|++||.+..++++|++.|. ++++.|+-+-+..=|-.+.
T Consensus 722 ~~VqLlgSG~il~evl~Aa~lL~~~~gV~adVwSvTS~~eL~Rd~ 766 (885)
T TIGR00759 722 GHVQLLGSGAIMRAVIEAAQLLAADWGVASDVWSVTSFTELARDG 766 (885)
T ss_pred ccEEEEeccHHHHHHHHHHHHHHHHHCCCCcEEECCCHHHHHHhH
Confidence 58999999999999999999872 6789999876655444443
No 54
>cd02011 TPP_PK Thiamine pyrophosphate (TPP) family, Phosphoketolase (PK) subfamily, TPP-binding module; PK catalyzes the conversion of D-xylulose 5-phosphate and phosphate to acetyl phosphate, D-glyceraldehyde-3-phosphate and H2O. This enzyme requires divalent magnesium ions and TPP for activity.
Probab=99.54 E-value=3.3e-14 Score=151.75 Aligned_cols=170 Identities=16% Similarity=0.188 Sum_probs=126.1
Q ss_pred CCccchHHHHHHHHHHHhhCCCCcEEEcCCcccHHHHHHHhcCCCHHHHHHHhcCCCCCCCCCCcccCCCCccccccccC
Q 001713 266 EGGETLIPGMKEMFDRAADLGVESIVIGMPHRGRLNVLGNVVRKPLRQIFSEFSGGTRPVDEVGLYTGTGDVKYHLGTSY 345 (1021)
Q Consensus 266 eG~Ea~i~gl~~~l~~a~~~g~~D~vigm~HRgrln~La~v~g~~~~~if~Ef~G~~~~~~~G~~~gGsgDvkyHlg~s~ 345 (1021)
-|+++..+.....++ |..|.++ +.+|... . .++.+|.+|. . . || +.+|.. ..
T Consensus 2 ~GHg~~~l~a~l~l~-----G~~~~~~-p~~~~~~----~----gl~~lf~qfs-~-----~----gg---~psH~~-~~ 53 (227)
T cd02011 2 PGHGGPAVLANLYLE-----GSYSEFY-PEISQDE----E----GMRKLFKQFS-F-----P----GG---IPSHAA-PE 53 (227)
T ss_pred CChHHHHHHHHHHhc-----CCCcccc-ccccccH----H----HHHHHHHhcC-C-----C----CC---CCCCCc-cc
Confidence 477776665555554 4346666 6888654 1 1366888882 1 1 11 557875 22
Q ss_pred CCCCCCCcceeeeeccccCCcccccceeehHHHHhHHhcCCCCCCCcEEEEEeCccccCCccHH---HHHHHhcCCCCCC
Q 001713 346 DRPTRGGKRIHLSLVANPSHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVV---YETLHLSALPNYS 422 (1021)
Q Consensus 346 ~~~~~~g~~i~l~l~~npShlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDgA~sGqG~v---~EalnlA~LP~y~ 422 (1021)
++ .+....+.||.++++|+|+|+. +. +.+++|++|||+++ +|.+ ||+.+++ ..++
T Consensus 54 ---tp-------Gi~~~~G~LG~gLs~A~G~a~d----~~-----d~iv~~vvGDGE~e-eG~lA~~W~a~~~~--~~~~ 111 (227)
T cd02011 54 ---TP-------GSIHEGGELGYSLSHAYGAVFD----NP-----DLIVACVVGDGEAE-TGPLATSWHSNKFL--NPAT 111 (227)
T ss_pred ---CC-------CeeecccchhhHHHHHHHhhhc----CC-----CcEEEEEECcCHHH-HHhHHHHHHhhhhh--cccc
Confidence 11 2355568899999999999852 22 37999999999998 9997 7766664 3334
Q ss_pred cccEEEEEEcCCcccccCCCCCc-ccccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHc
Q 001713 423 IGGTIHIVVNNQVAFTTDPMSGR-SSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQT 485 (1021)
Q Consensus 423 ~GGvI~Vv~NNq~g~tT~~~~~r-s~~~~sd~Aka~g~p~~~VdG~D~eAV~~a~~~A~e~rr~ 485 (1021)
.|.++-|+.||+|.++++...++ +...+.+++++||++.+.|||+|+++|++++..|+++++.
T Consensus 112 ~~~vLpIld~Ng~~i~~pt~~~~~~~e~l~~~~~~yG~~~~~VDG~D~~av~~~~a~a~~~~~~ 175 (227)
T cd02011 112 DGAVLPILHLNGYKISNPTILARISHEELEALFRGYGYEPYFVEGDDPETMHQAMAATLDWAIE 175 (227)
T ss_pred cCCeEEEEEcCCCcccCCccccccCchhHHHHHHhCCCceEEECCCCHHHHHHHHHHHHHHHHH
Confidence 44588899999999999998664 4678999999999999999999999999999999998765
No 55
>PF00456 Transketolase_N: Transketolase, thiamine diphosphate binding domain; InterPro: IPR005474 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 3M49_B 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 3HYL_A 3RIM_A ....
Probab=99.49 E-value=9.5e-14 Score=156.74 Aligned_cols=132 Identities=20% Similarity=0.225 Sum_probs=106.6
Q ss_pred ccCCcccccceeehHHHHhHHhcC-----CCCCCCcEEEEEeCccccCCccHHHHHHHhc---CCCCCCcccEEEEEEcC
Q 001713 362 NPSHLEAVDPVVIGKTRAKQYYSN-----DMDRTKNMAVLIHGDGSFAGQGVVYETLHLS---ALPNYSIGGTIHIVVNN 433 (1021)
Q Consensus 362 npShlg~~~PvA~G~A~A~q~~~~-----d~~~~~~v~v~~~GDgA~sGqG~v~EalnlA---~LP~y~~GGvI~Vv~NN 433 (1021)
..+.||.++++|+|+|+|.|..+. +.+..+..++|++|||.+. ||++|||+.+| +|.+ +|.||.+|
T Consensus 109 stGsLGqGl~~avG~Ala~k~~~~~~n~~~~~~~~~~vy~l~GDGel~-EG~~~EA~~~A~~~~L~n-----Li~i~D~N 182 (332)
T PF00456_consen 109 STGSLGQGLSIAVGMALAEKMLGARFNKPGFDIIDHRVYVLMGDGELQ-EGSVWEAASLAGHYKLDN-----LIVIYDSN 182 (332)
T ss_dssp --SSTTHHHHHHHHHHHHHHHHHHHHHBTTBSTTT--EEEEEEHHHHH-SHHHHHHHHHHHHTT-TT-----EEEEEEEE
T ss_pred eccchhcchhhHHHHHHHHHHHHhhhcccccccccceEEEEecCcccc-chhhHHHHHHHHHhCCCC-----EEEEEecC
Confidence 346699999999999999987532 2223356899999999999 99999999999 9998 99999999
Q ss_pred CcccccCCCCCcccccHHHHHhhcCccEEEE-eCCCHHHHHHHHHHHHHHHHccCCCEEEEEeeeccCCCC
Q 001713 434 QVAFTTDPMSGRSSQYCTDVAKALDAPIFHV-NGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYRRFGHN 503 (1021)
Q Consensus 434 q~g~tT~~~~~rs~~~~sd~Aka~g~p~~~V-dG~D~eAV~~a~~~A~e~rr~~~gPvlIe~vtYR~~GHn 503 (1021)
++.++.+.+... ..++.++.++||+.++.| ||+|+++++.|++.|.. ..++|++|.+.|-.-+|-.
T Consensus 183 ~~q~dg~~~~~~-~~~~~~k~~a~Gw~v~~v~dGhd~~~i~~A~~~a~~---~~~kP~~Ii~~TvkG~G~~ 249 (332)
T PF00456_consen 183 GIQIDGPTDIVF-SEDIAKKFEAFGWNVIEVCDGHDVEAIYAAIEEAKA---SKGKPTVIIARTVKGKGVP 249 (332)
T ss_dssp SEETTEEGGGTH-HSHHHHHHHHTT-EEEEEEETTBHHHHHHHHHHHHH---STSS-EEEEEEE-TTTTST
T ss_pred CcccCCCccccc-chHHHHHHHHhhhhhcccccCcHHHHHHHHHHHHHh---cCCCCceeecceEEecCch
Confidence 999988776543 467889999999999999 99999999999988853 3379999999999999984
No 56
>PRK11864 2-ketoisovalerate ferredoxin oxidoreductase subunit beta; Provisional
Probab=99.44 E-value=1.8e-12 Score=144.01 Aligned_cols=165 Identities=16% Similarity=0.122 Sum_probs=121.8
Q ss_pred CcccHHHHHHHhcCCCHH-HHHHHhcCCCC------CCCCCCcccCCCCccccccccCCCCCCCCcceeeeeccccCCcc
Q 001713 295 PHRGRLNVLGNVVRKPLR-QIFSEFSGGTR------PVDEVGLYTGTGDVKYHLGTSYDRPTRGGKRIHLSLVANPSHLE 367 (1021)
Q Consensus 295 ~HRgrln~La~v~g~~~~-~if~Ef~G~~~------~~~~G~~~gGsgDvkyHlg~s~~~~~~~g~~i~l~l~~npShlg 367 (1021)
-||||..+... |.++. .++.+.+|+.+ |+..+ .+|. ||+. +.+ +....+++|
T Consensus 14 ~~~gh~~C~GC--G~~~~~~~l~~~lg~~~v~~~~iGC~~~--~~g~----~p~~-~~~------------~~~i~~~~G 72 (300)
T PRK11864 14 FYPGNAACPGC--GAPLGLRYLLKALGEKTVLVIPASCSTV--IQGD----TPKS-PLT------------VPVLHTAFA 72 (300)
T ss_pred ecCCCccCCCC--CCHHHHHHHHHHhCCCeEEEeCCCccce--ecCC----CCcc-ccc------------ccceeehhh
Confidence 37888866655 77877 88888888765 55432 1222 4654 211 122236699
Q ss_pred cccceeehHHHHhHHhcCCCCCCCcEEEEEeCccccCCccHHHHHHHhc---CCCCCCcccEEEEEEcCCcccccCCCCC
Q 001713 368 AVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS---ALPNYSIGGTIHIVVNNQVAFTTDPMSG 444 (1021)
Q Consensus 368 ~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDgA~sGqG~v~EalnlA---~LP~y~~GGvI~Vv~NNq~g~tT~~~~~ 444 (1021)
.+.++|.|.++|.+.++++ ...++++.|||++. ++-+ |+||.| ++| +++||+||++...|-.+.+
T Consensus 73 ~~~~~A~G~a~A~~~~~~~----~~~Vva~~GDG~~~-~~g~-~~l~~A~~~~~~------v~~vv~dN~~~~~TGgQ~S 140 (300)
T PRK11864 73 ATAAVASGIEEALKARGEK----GVIVVGWAGDGGTA-DIGF-QALSGAAERNHD------ILYIMYDNEAYMNTGIQRS 140 (300)
T ss_pred ChHHHHHHHHHHHHhhCCC----CcEEEEEEccCccc-cccH-HHHHHHHHhCcC------EEEEEECCeeeecCCCCCC
Confidence 9999999999998876543 24455599999998 7776 999999 999 9999999998776632221
Q ss_pred c-----------------ccccHHHHHhhcCccEE-EEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEee
Q 001713 445 R-----------------SSQYCTDVAKALDAPIF-HVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVC 496 (1021)
Q Consensus 445 r-----------------s~~~~sd~Aka~g~p~~-~VdG~D~eAV~~a~~~A~e~rr~~~gPvlIe~vt 496 (1021)
- ...++..+++++|++.+ +++--|+..+.+++++|++ .+||.||++.+
T Consensus 141 ~~Tp~ga~t~tsp~G~~~~kkdi~~i~~a~g~~yVA~~~~~~~~~~~~~i~~A~~----~~Gps~I~~~s 206 (300)
T PRK11864 141 SSTPYGAWTTTTPGGKREHKKPVPDIMAAHKVPYVATASIAYPEDFIRKLKKAKE----IRGFKFIHLLA 206 (300)
T ss_pred CCCcCCCccccCCCCCcCCCCCHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHh----CCCCEEEEEeC
Confidence 1 12456788999999866 5788999999999999985 68999999864
No 57
>COG3959 Transketolase, N-terminal subunit [Carbohydrate transport and metabolism]
Probab=99.42 E-value=1.1e-12 Score=137.39 Aligned_cols=126 Identities=20% Similarity=0.234 Sum_probs=110.1
Q ss_pred eccccCCcccccceeehHHHHhHHhcCCCCCCCcEEEEEeCccccCCccHHHHHHHhc---CCCCCCcccEEEEEEcCCc
Q 001713 359 LVANPSHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS---ALPNYSIGGTIHIVVNNQV 435 (1021)
Q Consensus 359 l~~npShlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDgA~sGqG~v~EalnlA---~LP~y~~GGvI~Vv~NNq~ 435 (1021)
+-.|.+.||.++++|+|+|++.|..+.+ .-++++.|||... ||.+|||+..| +|.+ +|-||.-|..
T Consensus 114 ve~stGSLGqGLsvavGmAlg~kl~~~~-----~~VyvilGDGEl~-EG~~WEAam~Aah~~L~N-----LiaivD~N~~ 182 (243)
T COG3959 114 VEVSTGSLGQGLSVAVGMALGAKLKGSP-----YRVYVILGDGELD-EGQVWEAAMTAAHYKLDN-----LIAIVDRNKL 182 (243)
T ss_pred eeecCCcccccchHHHHHHHHHhhcCCC-----ceEEEEecCcccc-cccHHHHHHHHHHhccCc-----EEEEEecCCc
Confidence 3456677999999999999999998776 7899999999998 99999999999 9998 8999999988
Q ss_pred ccccCCCCCcccccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeeec
Q 001713 436 AFTTDPMSGRSSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYR 498 (1021)
Q Consensus 436 g~tT~~~~~rs~~~~sd~Aka~g~p~~~VdG~D~eAV~~a~~~A~e~rr~~~gPvlIe~vtYR 498 (1021)
-.+...++..+..++.++.++|||.++.|||+|++++++|+..+.. ..++|.+|-+.|-+
T Consensus 183 QldG~t~~i~~~~pL~~k~eAFGw~V~evdG~d~~~i~~a~~~~~~---~~~rP~~IIa~Tvk 242 (243)
T COG3959 183 QLDGETEEIMPKEPLADKWEAFGWEVIEVDGHDIEEIVEALEKAKG---SKGRPTVIIAKTVK 242 (243)
T ss_pred ccCCchhhccCcchhHHHHHhcCceEEEEcCcCHHHHHHHHHhhhc---cCCCCeEEEEeccc
Confidence 7777777778888999999999999999999999999987776642 23499999998754
No 58
>cd02017 TPP_E1_EcPDC_like Thiamine pyrophosphate (TPP) family, E1 of E. coli PDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the Escherichia coli pyruvate dehydrogenase multienzyme complex (PDC). PDC catalyzes the oxidative decarboxylation of pyruvate and the subsequent acetylation of coenzyme A to acetyl-CoA. The E1 component of PDC catalyzes the first step of the multistep process, using TPP and a divalent cation as cofactors. E. coli PDC is a homodimeric enzyme.
Probab=99.37 E-value=3.2e-12 Score=145.39 Aligned_cols=133 Identities=17% Similarity=0.153 Sum_probs=112.8
Q ss_pred ccCCcccccceeehHHHHhHHhcCC--CCCCCcEEEEEeCccccCCccHHHHHHHhc---CCCCCCcccEEEEEEcCCcc
Q 001713 362 NPSHLEAVDPVVIGKTRAKQYYSND--MDRTKNMAVLIHGDGSFAGQGVVYETLHLS---ALPNYSIGGTIHIVVNNQVA 436 (1021)
Q Consensus 362 npShlg~~~PvA~G~A~A~q~~~~d--~~~~~~v~v~~~GDgA~sGqG~v~EalnlA---~LP~y~~GGvI~Vv~NNq~g 436 (1021)
.++.||.++++|+|+|+|.++.... ....+.-++|++|||.+. +|++||++++| +|.+ +|.||.+|++.
T Consensus 116 sTGSLGqGLs~AvGmAla~r~l~a~~~~~~~~~rvyvllGDGEl~-EG~vwEA~~~Ag~~kL~N-----LivIvD~N~~q 189 (386)
T cd02017 116 PTVSMGLGPIQAIYQARFNRYLEDRGLKDTSDQKVWAFLGDGEMD-EPESLGAIGLAAREKLDN-----LIFVVNCNLQR 189 (386)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHhhhccCCCCCeEEEEEcccccc-cHHHHHHHHHHHHhCCCC-----EEEEEECCCCc
Confidence 4567999999999999999973211 111346799999999999 99999999999 8987 99999999999
Q ss_pred cccCCCCC-cccccHHHHHhhcCccEEEEe--------------------------------------------------
Q 001713 437 FTTDPMSG-RSSQYCTDVAKALDAPIFHVN-------------------------------------------------- 465 (1021)
Q Consensus 437 ~tT~~~~~-rs~~~~sd~Aka~g~p~~~Vd-------------------------------------------------- 465 (1021)
++.+.... ....++.++.++|||.++.||
T Consensus 190 idG~t~~v~~~~e~l~~kf~AfGW~vi~V~~g~~~~~~f~~~gg~~l~~~~~~~~~~~~~~l~~~~~~~~r~~l~~~~~~ 269 (386)
T cd02017 190 LDGPVRGNGKIIQELEGIFRGAGWNVIKVIWGSKWDELLAKDGGGALRQRMEETVDGDYQTLKAKDGAYVREHFFGKYPE 269 (386)
T ss_pred cCCcccccccCchhHHHHHHhcCCEEEEEecCCcchhhhccCcchHHHHHHHhcccHHHHHHhhcchHHHHHHhccccHH
Confidence 99887764 245789999999999999998
Q ss_pred -------------------CCCHHHHHHHHHHHHHHHHccCCCEEEEEeeeccCCCC
Q 001713 466 -------------------GDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYRRFGHN 503 (1021)
Q Consensus 466 -------------------G~D~eAV~~a~~~A~e~rr~~~gPvlIe~vtYR~~GHn 503 (1021)
|+|+++++.|+..|.+ .-++|++|.+.|-.-+|-.
T Consensus 270 ~~~~~~~~~d~~~~~~~~gGhD~~~i~~A~~~a~~---~~~kPt~Iia~TikG~G~~ 323 (386)
T cd02017 270 LKALVTDLSDEDLWALNRGGHDPRKVYAAYKKAVE---HKGKPTVILAKTIKGYGLG 323 (386)
T ss_pred HHHHhhcccHHhhhhhccCCCCHHHHHHHHHHHHh---CCCCCeEEEEeCeecCCCC
Confidence 9999999999988764 2368999999999988865
No 59
>cd00568 TPP_enzymes Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. These enzymes include, among others, the E1 components of the pyruvate, the acetoin and the branched chain alpha-keto acid dehydrogenase complexes.
Probab=99.18 E-value=3.7e-11 Score=121.70 Aligned_cols=110 Identities=23% Similarity=0.176 Sum_probs=85.5
Q ss_pred cCCcccccceeehHHHHhHHhcCCCCCCCcEEEEEeCccccCCccHHHHHHHhc---CCCCCCcccEEEEEEcCCccccc
Q 001713 363 PSHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS---ALPNYSIGGTIHIVVNNQVAFTT 439 (1021)
Q Consensus 363 pShlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDgA~sGqG~v~EalnlA---~LP~y~~GGvI~Vv~NNq~g~tT 439 (1021)
.+.+|.++|.|+|+++|.+. ..+|++.|||++. . ..++|+.+ ++| +++||.||+....+
T Consensus 45 ~g~~G~~~~~a~Gaa~a~~~---------~~vv~~~GDG~~~-~--~~~~l~ta~~~~~~------~~~iv~nN~~~~~~ 106 (168)
T cd00568 45 FGAMGYGLPAAIGAALAAPD---------RPVVCIAGDGGFM-M--TGQELATAVRYGLP------VIVVVFNNGGYGTI 106 (168)
T ss_pred chhhhhhHHHHHHHHHhCCC---------CcEEEEEcCcHHh-c--cHHHHHHHHHcCCC------cEEEEEECCccHHH
Confidence 36799999999999999752 5689999999997 5 45777767 999 99999999965544
Q ss_pred CCC-----------CCcccccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEee
Q 001713 440 DPM-----------SGRSSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVC 496 (1021)
Q Consensus 440 ~~~-----------~~rs~~~~sd~Aka~g~p~~~VdG~D~eAV~~a~~~A~e~rr~~~gPvlIe~vt 496 (1021)
... ......++..+|++||+++++|++ ++++..+.+.|. +.++|+|||+.|
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~d~~~~a~~~G~~~~~v~~--~~~l~~a~~~a~----~~~~p~~i~v~~ 168 (168)
T cd00568 107 RMHQEAFYGGRVSGTDLSNPDFAALAEAYGAKGVRVED--PEDLEAALAEAL----AAGGPALIEVKT 168 (168)
T ss_pred HHHHHHHcCCCcccccCCCCCHHHHHHHCCCeEEEECC--HHHHHHHHHHHH----hCCCCEEEEEEC
Confidence 321 122345788999999999999985 677766666654 678999999975
No 60
>cd02002 TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC subfamily, TPP-binding module; composed of proteins similar to Pseudomonas putida benzoylformate decarboxylase (BFDC). P. putida BFDC plays a role in the mandelate pathway, catalyzing the conversion of benzoylformate to benzaldehyde and carbon dioxide. This enzyme is dependent on TPP and a divalent metal cation as cofactors.
Probab=99.13 E-value=1.5e-10 Score=119.38 Aligned_cols=110 Identities=20% Similarity=0.192 Sum_probs=86.1
Q ss_pred CCcccccceeehHHHHhHHhcCCCCCCCcEEEEEeCccccCCccHHHHHHHhc--CCCCCCcccEEEEEEcCC-cccccC
Q 001713 364 SHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS--ALPNYSIGGTIHIVVNNQ-VAFTTD 440 (1021)
Q Consensus 364 Shlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDgA~sGqG~v~EalnlA--~LP~y~~GGvI~Vv~NNq-~g~tT~ 440 (1021)
+.+|.++|.|+|+++|.+. ..+|++.|||+|. .+. .|....+ ++| +++||.||+ ||+++.
T Consensus 49 g~mG~~lp~aiGaala~~~---------~~vv~i~GDG~f~-~~~-~el~ta~~~~~p------~~~iV~nN~~~~~~~~ 111 (178)
T cd02002 49 GGLGWGLPAAVGAALANPD---------RKVVAIIGDGSFM-YTI-QALWTAARYGLP------VTVVILNNRGYGALRS 111 (178)
T ss_pred ccccchHHHHHHHHhcCCC---------CeEEEEEcCchhh-ccH-HHHHHHHHhCCC------eEEEEEcCccHHHHHH
Confidence 7799999999999998742 5799999999996 553 5554444 999 999999997 887642
Q ss_pred CC-----------------CCcccccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEee
Q 001713 441 PM-----------------SGRSSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVC 496 (1021)
Q Consensus 441 ~~-----------------~~rs~~~~sd~Aka~g~p~~~VdG~D~eAV~~a~~~A~e~rr~~~gPvlIe~vt 496 (1021)
.. ......++.++|++||++.++|++ ++++..++++|++ .++|+|||+.+
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~--~~el~~al~~a~~----~~~p~vi~v~v 178 (178)
T cd02002 112 FLKRVGPEGPGENAPDGLDLLDPGIDFAAIAKAFGVEAERVET--PEELDEALREALA----EGGPALIEVVV 178 (178)
T ss_pred HHHHHcCCCcccccccccccCCCCCCHHHHHHHcCCceEEeCC--HHHHHHHHHHHHh----CCCCEEEEEEC
Confidence 11 001236788999999999999986 8888888887764 57899999863
No 61
>PF02780 Transketolase_C: Transketolase, C-terminal domain; InterPro: IPR005476 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 2E6K_A 3JU3_A 2R8P_B ....
Probab=99.13 E-value=2.1e-11 Score=118.89 Aligned_cols=102 Identities=20% Similarity=0.197 Sum_probs=88.8
Q ss_pred cccCCCCCeEEEEeechhHHHHHHHHHHc--CCCcEEEEEecccCCCCHHHHHHHHHcCCCceEEEEecCCcccchHhhH
Q 001713 885 HSDLEEGIRRLILCSGKVYYELYEERKKH--SASDIAICRVEQLCPFPYDLVQRELKRYPNAEVVWSQEEPMNMGAYTYI 962 (1021)
Q Consensus 885 ~~~~~~g~~~~Iv~~Gk~~~~l~~a~~~~--~~~~v~ii~le~L~Pfp~~~i~~~l~k~~~~~~vwvqEe~~n~G~~~~v 962 (1021)
+.+.++|.|++|||+|.+++.++++++.+ +++++.||++++|+|||.+.|.+++++++++ ++++|....+|+++.|
T Consensus 3 ~~~~~~g~di~iia~G~~~~~al~A~~~L~~~Gi~~~vi~~~~i~P~d~~~l~~~~~~~~~v--vvvee~~~~gg~g~~i 80 (124)
T PF02780_consen 3 AEVLREGADITIIAYGSMVEEALEAAEELEEEGIKAGVIDLRTIKPFDEEALLESLKKTGRV--VVVEEHYKIGGLGSAI 80 (124)
T ss_dssp EEEEESSSSEEEEEETTHHHHHHHHHHHHHHTTCEEEEEEEEEEESSBHHHHHHHSHHHHHH--HHSETCESEEEEHSSH
T ss_pred EEEEeCCCCEEEEeehHHHHHHHHHHHHHHHcCCceeEEeeEEEecccccchHHHHHHhccc--cccccccccccHHHHH
Confidence 34568899999999999999999999886 5799999999999999999999999999988 9999999999999999
Q ss_pred HHHHHHHH-HhhccCCCCcEEEEcCCCCcCC
Q 001713 963 APRLCTAM-KAVDRGTMEDIKYVGRAPSAAS 992 (1021)
Q Consensus 963 ~~~i~~~~-~~l~~~~~~~~~~vgr~~~~~p 992 (1021)
...+.+.. ..++ .++.++|-|+.+.|
T Consensus 81 ~~~l~~~~~~~~~----~~~~~~g~~d~~~~ 107 (124)
T PF02780_consen 81 AEYLAENGFNDLD----APVKRLGVPDEFIP 107 (124)
T ss_dssp HHHHHHHTTTGEE----EEEEEEEE-SSSHH
T ss_pred HHHHHHhCCccCC----CCeEEEEECCCccc
Confidence 99998843 3232 57899998887776
No 62
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=99.10 E-value=4.6e-09 Score=127.90 Aligned_cols=253 Identities=15% Similarity=0.158 Sum_probs=157.3
Q ss_pred chHHHHHHHHhhccCCCCcceEehhhhhhhHhhHHHHHHHHHhhhhhhhcCccceEEEeCccCCCCCcCCcCchhhHhhh
Q 001713 707 SEFGVLGFELGYSMENPNSLVMWEAQFGDFANGAQVIFDQFVNSGESKWLRQSGLVVMLPHGYDGQGPEHSSARLERFLQ 786 (1021)
Q Consensus 707 SE~~vlGfe~G~a~~g~~~lviwEaqFgDF~n~Aq~~iDqfi~s~~~kw~~~~~lV~~lPhG~~G~GpeHSs~r~Er~Lq 786 (1021)
+|.+.+.+++|.|++|-|.++ +.=|-=+|.+ .|++...+ .-+...|+|+.+-.+. |-++.+... -.+++.
T Consensus 54 ~E~~a~~~~~GAs~aG~ra~t---~ts~~Gl~~~---~e~l~~~~--~~g~~~~iV~~~~~~~-gp~~~~~~q-~d~~~~ 123 (595)
T TIGR03336 54 NEKVAVEVAAGAAWSGLRAFC---TMKHVGLNVA---ADPLMTLA--YTGVKGGLVVVVADDP-SMHSSQNEQ-DTRHYA 123 (595)
T ss_pred CHHHHHHHHHHHHhcCcceEE---EccCCchhhh---HHHhhhhh--hhcCcCceEEEEccCC-CCccchhhH-hHHHHH
Confidence 899999999999999999999 4445445555 67665432 2234678888875431 222222111 111211
Q ss_pred ccCCCCCcccCCCchhhhcccccCeEEEecCCHHHHHHHHHHHHh--cCCCCcEEEEeeccccCCccccCCcccccccCC
Q 001713 787 MSDDNPYVIPEMDSTLRTQIQECNWQIVNVTTPANYFHVLRRQIH--REFRKPLVVMSPKNLLRHKECKSNLSEFDDVQG 864 (1021)
Q Consensus 787 l~~e~~~~~~~ipg~~~~~~~~~Nl~Vv~pstpad~fhlLrrqi~--~~~~kPliv~~pK~Llr~~~~~s~~~e~~~~~~ 864 (1021)
.+..|.|+.|+|+.+.|.+-+.+.. ..++-||+++..+.|-.....+ .+.+....+.
T Consensus 124 --------------------~~~~~~vl~p~~~qE~~d~~~~Af~lae~~~~PV~v~~d~~l~h~~~~v-~~~~~~~~~~ 182 (595)
T TIGR03336 124 --------------------KFAKIPCLEPSTPQEAKDMVKYAFELSEKFGLPVILRPTTRISHMRGDV-ELGEIPKEEV 182 (595)
T ss_pred --------------------HhcCCeEECCCCHHHHHHHHHHHHHHHHHHCCCEEEEEeeeeccceeeE-ecCCCccccc
Confidence 1124889999999999999999865 4689999999998665332222 2222110000
Q ss_pred CCCCCCCCCcceEe-----------------ecC-ccc---cccCCCCCeEEEEeechhHHHHHHHHHHcCCCcEEEEEe
Q 001713 865 HPGFDKQGTRFKRL-----------------IKD-QNE---HSDLEEGIRRLILCSGKVYYELYEERKKHSASDIAICRV 923 (1021)
Q Consensus 865 ~~~~~~~~~~f~~v-----------------i~~-~~~---~~~~~~g~~~~Iv~~Gk~~~~l~~a~~~~~~~~v~ii~l 923 (1021)
-+.+..+-.+|... +.+ ... ..+..++.|++|||+|.++..++++.+++ ++++.|+++
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~di~iv~~G~~~~~a~ea~~~~-Gi~~~v~~~ 261 (595)
T TIGR03336 183 VKGFEKDPERYVMVPAIARVRHKKLLSKQHKLREELNESPLNRLEINGAKIGVIASGIAYNYVKEALERL-GVDVSVLKI 261 (595)
T ss_pred ccCCCCChhhcCCCchhHHHHHHHHHHHHHHHHHHHHhCCCceeccCCCCEEEEEcCHHHHHHHHHHHHc-CCCeEEEEe
Confidence 00111111111110 000 000 01122467899999999999999988877 689999999
Q ss_pred cccCCCCHHHHHHHHHcCCCceEEEEecCCcccchHhhHHHHHHHHHHhhccCCCCcEEEEcCCCCcCCC-cccHHHHHH
Q 001713 924 EQLCPFPYDLVQRELKRYPNAEVVWSQEEPMNMGAYTYIAPRLCTAMKAVDRGTMEDIKYVGRAPSAASA-TGFYQVHVK 1002 (1021)
Q Consensus 924 e~L~Pfp~~~i~~~l~k~~~~~~vwvqEe~~n~G~~~~v~~~i~~~~~~l~~~~~~~~~~vgr~~~~~pa-~g~~~~h~~ 1002 (1021)
++++|||.+.|.+.++++.++ |+++|.. +|+.+.+. .+ +... +.+++.+|.++.-.|. .|+...+..
T Consensus 262 ~~i~Pld~~~i~~~~~~~~~v--ivvEe~~--~~~~~~~~-~~---~~~~----~~~v~~~G~~d~fi~~~~~Ld~~~i~ 329 (595)
T TIGR03336 262 GFTYPVPEGLVEEFLSGVEEV--LVVEELE--PVVEEQVK-AL---AGTA----GLNIKVHGKEDGFLPREGELNPDIVV 329 (595)
T ss_pred CCCCCCCHHHHHHHHhcCCeE--EEEeCCc--cHHHHHHH-HH---HHhc----CCCeEEecccCCccCcccCcCHHHHH
Confidence 999999999999999999876 7786644 34332222 22 2221 1378999999766664 335554444
Q ss_pred H
Q 001713 1003 E 1003 (1021)
Q Consensus 1003 e 1003 (1021)
+
T Consensus 330 ~ 330 (595)
T TIGR03336 330 N 330 (595)
T ss_pred H
Confidence 3
No 63
>cd02013 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, Xsc-like subfamily, TPP-binding module; composed of proteins similar to Alcaligenes defragrans sulfoacetaldehyde acetyltransferase (Xsc). Xsc plays a key role in the degradation of taurine, catalyzing the desulfonation of 2-sulfoacetaldehyde into sulfite and acetyl phosphate. This enzyme requires TPP and divalent metal ions for activity.
Probab=99.10 E-value=1.2e-10 Score=122.56 Aligned_cols=117 Identities=21% Similarity=0.269 Sum_probs=90.7
Q ss_pred CCcccccceeehHHHHhHHhcCCCCCCCcEEEEEeCccccCCccHHHHHHHhc--CCCCCCcccEEEEEEcCC-cccccC
Q 001713 364 SHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS--ALPNYSIGGTIHIVVNNQ-VAFTTD 440 (1021)
Q Consensus 364 Shlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDgA~sGqG~v~EalnlA--~LP~y~~GGvI~Vv~NNq-~g~tT~ 440 (1021)
+.+|..+|.|+|+++|... ..+||+.|||+|. -...|-.+.+ +|| +|+||.||+ ||+...
T Consensus 53 g~mG~~lpaaiGa~la~p~---------r~vv~i~GDG~f~--m~~~eL~Ta~~~~lp------vi~vV~NN~~yg~~~~ 115 (196)
T cd02013 53 GNCGYALPAIIGAKAAAPD---------RPVVAIAGDGAWG--MSMMEIMTAVRHKLP------VTAVVFRNRQWGAEKK 115 (196)
T ss_pred cccccHHHHHHHHHHhCCC---------CcEEEEEcchHHh--ccHHHHHHHHHhCCC------eEEEEEECchhHHHHH
Confidence 4589999999999998642 4689999999995 5678888877 999 888886665 776531
Q ss_pred C-----CC-----CcccccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeeeccC
Q 001713 441 P-----MS-----GRSSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYRRF 500 (1021)
Q Consensus 441 ~-----~~-----~rs~~~~sd~Aka~g~p~~~VdG~D~eAV~~a~~~A~e~rr~~~gPvlIe~vtYR~~ 500 (1021)
. .. .....++..+|++||++.++|+ +++++..+.++|++..+. ++|+|||+.+.+..
T Consensus 116 ~q~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~~~~~-~~p~liev~v~~~~ 182 (196)
T cd02013 116 NQVDFYNNRFVGTELESESFAKIAEACGAKGITVD--KPEDVGPALQKAIAMMAE-GKTTVIEIVCDQEL 182 (196)
T ss_pred HHHHHcCCCcccccCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHhcCCC-CCeEEEEEEeCccc
Confidence 0 00 1124688999999999999998 588898888888865444 78999999986543
No 64
>cd03372 TPP_ComE Thiamine pyrophosphate (TPP) family, ComE subfamily, TPP-binding module; composed of proteins similar to Methanococcus jannaschii sulfopyruvate decarboxylase beta subunit (ComE). M. jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits, which catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. ComDE requires TPP and divalent metal cation cofactors.
Probab=99.09 E-value=5.5e-10 Score=116.10 Aligned_cols=112 Identities=17% Similarity=0.139 Sum_probs=84.2
Q ss_pred CCcccccceeehHHHHhHHhcCCCCCCCcEEEEEeCcccc--CCccHHHHHHHhcCCCCCCcccEEEE-EEcCCcccccC
Q 001713 364 SHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSF--AGQGVVYETLHLSALPNYSIGGTIHI-VVNNQVAFTTD 440 (1021)
Q Consensus 364 Shlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDgA~--sGqG~v~EalnlA~LP~y~~GGvI~V-v~NNq~g~tT~ 440 (1021)
+.+|.++|.|+|+++|.+ ..+||+.|||+| + .+.++++.++..+| +++| +.||+||+...
T Consensus 42 g~mG~~lp~AiGaala~~----------~~vv~i~GDG~f~m~-~~el~ta~~~~~~~------l~vvV~NN~~~~~~~~ 104 (179)
T cd03372 42 GSMGLASSIGLGLALAQP----------RKVIVIDGDGSLLMN-LGALATIAAEKPKN------LIIVVLDNGAYGSTGN 104 (179)
T ss_pred cchhhHHHHHHHHHhcCC----------CcEEEEECCcHHHhC-HHHHHHHHHcCCCC------EEEEEEcCccccccCC
Confidence 569999999999999964 248999999999 4 55666665554455 5555 55666887653
Q ss_pred CCCCc-ccccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeeecc
Q 001713 441 PMSGR-SSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYRR 499 (1021)
Q Consensus 441 ~~~~r-s~~~~sd~Aka~g~p~~~VdG~D~eAV~~a~~~A~e~rr~~~gPvlIe~vtYR~ 499 (1021)
..... ...++..+|++||++.+.|+| +++++..+.++|. ++|++||+.+-+.
T Consensus 105 ~~~~~~~~~d~~~lA~a~G~~~~~v~~-~~~el~~al~~a~------~gp~lIev~~~~~ 157 (179)
T cd03372 105 QPTHAGKKTDLEAVAKACGLDNVATVA-SEEAFEKAVEQAL------DGPSFIHVKIKPG 157 (179)
T ss_pred CCCCCCCCCCHHHHHHHcCCCeEEecC-CHHHHHHHHHHhc------CCCEEEEEEEcCC
Confidence 22111 246789999999999999998 7888887777774 6899999999543
No 65
>cd02004 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL). Pseudomonas fluorescens biovar I BZL cleaves the acyloin linkage of benzoin producing 2 molecules of benzaldehyde and enabling the Pseudomonas to grow on benzoin as the sole carbon and energy source. OCoD has a role in the detoxification of oxalate, catalyzing the decarboxylation of oxalyl-CoA to formate. 2-HPCL is a peroxisomal enzyme which plays a role in the alpha-oxidation of 3-methyl-branched fatty acids, catalyzing the cleavage of 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde. All these enzymes depend on Mg2+ and TPP for activity.
Probab=99.09 E-value=3.5e-10 Score=116.27 Aligned_cols=109 Identities=21% Similarity=0.154 Sum_probs=82.4
Q ss_pred CCcccccceeehHHHHhHHhcCCCCCCCcEEEEEeCccccCCccHHHHHHHhc---CCCCCCcccEEEEEEcCC-ccccc
Q 001713 364 SHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS---ALPNYSIGGTIHIVVNNQ-VAFTT 439 (1021)
Q Consensus 364 Shlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDgA~sGqG~v~EalnlA---~LP~y~~GGvI~Vv~NNq-~g~tT 439 (1021)
+.+|..+|.|+|+++|.+. ..++|+.|||+|. . ...| |..+ +|| +++||.||+ ||+..
T Consensus 48 g~mG~~lp~AiGa~la~~~---------~~vv~i~GDG~f~-~-~~~e-l~ta~~~~lp------v~ivv~NN~~~~~~~ 109 (172)
T cd02004 48 GTLGVGLGYAIAAALARPD---------KRVVLVEGDGAFG-F-SGME-LETAVRYNLP------IVVVVGNNGGWYQGL 109 (172)
T ss_pred CcccchHHHHHHHHHhCCC---------CeEEEEEcchhhc-C-CHHH-HHHHHHcCCC------EEEEEEECcccccch
Confidence 4599999999999998652 5689999999996 3 2333 4444 999 888887775 88875
Q ss_pred CCCCC-----------cccccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEee
Q 001713 440 DPMSG-----------RSSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVC 496 (1021)
Q Consensus 440 ~~~~~-----------rs~~~~sd~Aka~g~p~~~VdG~D~eAV~~a~~~A~e~rr~~~gPvlIe~vt 496 (1021)
..... ....+...+|++||++.++|+ +++++..+.+.|. +.++|+|||+.+
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~al~~a~----~~~~p~liev~i 171 (172)
T cd02004 110 DGQQLSYGLGLPVTTLLPDTRYDLVAEAFGGKGELVT--TPEELKPALKRAL----ASGKPALINVII 171 (172)
T ss_pred hhhhhhccCCCceeccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHH----HcCCCEEEEEEc
Confidence 32211 124678899999999999998 5888877777765 347999999975
No 66
>cd02014 TPP_POX Thiamine pyrophosphate (TPP) family, Pyruvate oxidase (POX) subfamily, TPP-binding module; composed of proteins similar to Lactobacillus plantarum POX, which plays a key role in controlling acetate production under aerobic conditions. POX decarboxylates pyruvate, producing hydrogen peroxide and the energy-storage metabolite acetylphosphate. It requires FAD in addition to TPP and a divalent cation as cofactors.
Probab=99.03 E-value=6e-10 Score=115.39 Aligned_cols=112 Identities=23% Similarity=0.279 Sum_probs=85.3
Q ss_pred CCcccccceeehHHHHhHHhcCCCCCCCcEEEEEeCccccCCccHHHHHHHhc--CCCCCCcccEEEEEEcCC-cccccC
Q 001713 364 SHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS--ALPNYSIGGTIHIVVNNQ-VAFTTD 440 (1021)
Q Consensus 364 Shlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDgA~sGqG~v~EalnlA--~LP~y~~GGvI~Vv~NNq-~g~tT~ 440 (1021)
+.+|.++|.|+|+++|... ..+|++.|||+|. .+ +.|-.+++ ++| +++||.||+ ||+.+.
T Consensus 51 g~mG~~~~~aiGa~~a~~~---------~~vv~i~GDG~f~-~~-~~el~t~~~~~lp------~~~iv~NN~~~~~~~~ 113 (178)
T cd02014 51 ATMGNGLPGAIAAKLAYPD---------RQVIALSGDGGFA-ML-MGDLITAVKYNLP------VIVVVFNNSDLGFIKW 113 (178)
T ss_pred chhhhHHHHHHHHHHhCCC---------CcEEEEEcchHHH-hh-HHHHHHHHHhCCC------cEEEEEECCchhHHHH
Confidence 4588999999999988642 5799999999997 55 88877766 899 899999996 776321
Q ss_pred -------CCCC--cccccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeeec
Q 001713 441 -------PMSG--RSSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYR 498 (1021)
Q Consensus 441 -------~~~~--rs~~~~sd~Aka~g~p~~~VdG~D~eAV~~a~~~A~e~rr~~~gPvlIe~vtYR 498 (1021)
+... ....++..+|++||++.+.|+ +++++..+.+.|. +.++|+|||+.+-+
T Consensus 114 ~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~~l~~a~----~~~~p~liev~~~~ 174 (178)
T cd02014 114 EQEVMGQPEFGVDLPNPDFAKIAEAMGIKGIRVE--DPDELEAALDEAL----AADGPVVIDVVTDP 174 (178)
T ss_pred HHHHhcCCceeccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHH----hCCCCEEEEEEeCC
Confidence 0001 123578899999999999987 5777766666554 45799999999843
No 67
>cd02015 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS. AHAS catalyzes the condensation of two molecules of pyruvate to give the acetohydroxyacid, 2-acetolactate. 2-Acetolactate is the precursor of the branched chain amino acids, valine and leucine. AHAS also catalyzes the condensation of pyruvate and 2-ketobutyrate to form 2-aceto-2-hydroxybutyrate in isoleucine biosynthesis. In addition to requiring TPP and a divalent metal ion as cofactors, AHAS requires FAD.
Probab=98.96 E-value=2.2e-09 Score=111.88 Aligned_cols=112 Identities=21% Similarity=0.230 Sum_probs=83.1
Q ss_pred CCcccccceeehHHHHhHHhcCCCCCCCcEEEEEeCccccCCccHHHHHHHhc--CCCCCCcccEEEEEEcCC-cccccC
Q 001713 364 SHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS--ALPNYSIGGTIHIVVNNQ-VAFTTD 440 (1021)
Q Consensus 364 Shlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDgA~sGqG~v~EalnlA--~LP~y~~GGvI~Vv~NNq-~g~tT~ 440 (1021)
+.+|..+|.|+|+++|.+. ..+|++.|||+|. ..+.|-...+ +|| +++||.||+ |++...
T Consensus 50 g~mG~~lp~aiGa~la~~~---------~~vv~i~GDG~f~--~~~~eL~ta~~~~lp------i~ivV~nN~~~~~~~~ 112 (186)
T cd02015 50 GTMGFGLPAAIGAKVARPD---------KTVICIDGDGSFQ--MNIQELATAAQYNLP------VKIVILNNGSLGMVRQ 112 (186)
T ss_pred cchhchHHHHHHHHHhCCC---------CeEEEEEcccHHh--ccHHHHHHHHHhCCC------eEEEEEECCccHHHHH
Confidence 5699999999999998642 4689999999995 5667744444 999 888888888 454321
Q ss_pred ------CC-----CCcccccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeeec
Q 001713 441 ------PM-----SGRSSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYR 498 (1021)
Q Consensus 441 ------~~-----~~rs~~~~sd~Aka~g~p~~~VdG~D~eAV~~a~~~A~e~rr~~~gPvlIe~vtYR 498 (1021)
.. ......+++.+|++||++.++|++ ++++..+.+.|. +.++|+|||+.+.+
T Consensus 113 ~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~--~~el~~al~~a~----~~~~p~liev~~~~ 175 (186)
T cd02015 113 WQELFYEGRYSHTTLDSNPDFVKLAEAYGIKGLRVEK--PEELEAALKEAL----ASDGPVLLDVLVDP 175 (186)
T ss_pred HHHHHcCCceeeccCCCCCCHHHHHHHCCCceEEeCC--HHHHHHHHHHHH----hCCCCEEEEEEeCC
Confidence 00 011236789999999999999986 566655555554 56899999999854
No 68
>cd02006 TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl subfamily, TPP-binding module; composed of proteins similar to Escherichia coli glyoxylate carboligase (Gcl). E. coli glyoxylate carboligase, plays a key role in glyoxylate metabolism where it catalyzes the condensation of two molecules of glyoxylate to give tartronic semialdehyde and carbon dioxide. This enzyme requires TPP, magnesium ion and FAD as cofactors.
Probab=98.93 E-value=1.2e-09 Score=115.33 Aligned_cols=115 Identities=23% Similarity=0.241 Sum_probs=88.2
Q ss_pred CCcccccceeehHHHHhHHhcCCCCCCCcEEEEEeCccccCCccHHHHHHHhc--CCCCCCcccEEEEEEcCC-cccccC
Q 001713 364 SHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS--ALPNYSIGGTIHIVVNNQ-VAFTTD 440 (1021)
Q Consensus 364 Shlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDgA~sGqG~v~EalnlA--~LP~y~~GGvI~Vv~NNq-~g~tT~ 440 (1021)
+.+|..+|.|+|+++|... .-+||+.|||+|. -...|-...+ +|| +++||.||+ ||+...
T Consensus 57 GsmG~~lpaaiGa~la~p~---------~~vv~i~GDG~f~--m~~~eL~Ta~~~~lp------viivV~NN~~yg~~~~ 119 (202)
T cd02006 57 GPLGWTVPAALGVAAADPD---------RQVVALSGDYDFQ--FMIEELAVGAQHRIP------YIHVLVNNAYLGLIRQ 119 (202)
T ss_pred cchhhhhHHHHhHHhhCCC---------CeEEEEEeChHhh--ccHHHHHHHHHhCCC------eEEEEEeCchHHHHHH
Confidence 5599999999999998652 4689999999995 6666666655 999 888988888 675321
Q ss_pred CC------------CCc--------ccccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeee
Q 001713 441 PM------------SGR--------SSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCY 497 (1021)
Q Consensus 441 ~~------------~~r--------s~~~~sd~Aka~g~p~~~VdG~D~eAV~~a~~~A~e~rr~~~gPvlIe~vtY 497 (1021)
.. ... ...+.+.+|++||++.++|+ +++++..+.+.|++..++.++|+|||+.+-
T Consensus 120 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~~~~~~~~p~liev~i~ 194 (202)
T cd02006 120 AQRAFDMDYQVNLAFENINSSELGGYGVDHVKVAEGLGCKAIRVT--KPEELAAAFEQAKKLMAEHRVPVVVEAILE 194 (202)
T ss_pred HHHHhcCccccccccccccccccCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHHhcccCCCcEEEEEEec
Confidence 00 000 13678899999999999996 688888888888865444578999999873
No 69
>cd02008 TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, IOR-alpha subfamily, TPP-binding module; composed of proteins similar to indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit. IOR catalyzes the oxidative decarboxylation of arylpyruvates, such as indolepyruvate or phenylpyruvate, which are generated by the transamination of aromatic amino acids, to the corresponding aryl acetyl-CoA.
Probab=98.93 E-value=3.9e-09 Score=109.40 Aligned_cols=114 Identities=16% Similarity=0.147 Sum_probs=85.6
Q ss_pred cCCcccccceeehHHHHhHHhcCCCCCCCcEEEEEeCccccCCccHHHHHHHhc--CCCCCCcccEEEEEEcCC-ccccc
Q 001713 363 PSHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS--ALPNYSIGGTIHIVVNNQ-VAFTT 439 (1021)
Q Consensus 363 pShlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDgA~sGqG~v~EalnlA--~LP~y~~GGvI~Vv~NNq-~g~tT 439 (1021)
-+.+|..+|.|+|+++|.+. .-+|++.|||+|. ...+.|....+ ++| +++||.||+ ||++-
T Consensus 50 ~g~mG~gl~~AiGa~la~p~---------~~Vv~i~GDG~f~-~~g~~eL~ta~~~~l~------i~vvV~nN~~~g~~~ 113 (178)
T cd02008 50 CTCMGASIGVAIGMAKASED---------KKVVAVIGDSTFF-HSGILGLINAVYNKAN------ITVVILDNRTTAMTG 113 (178)
T ss_pred cccCccHHHHHhhHHhhCCC---------CCEEEEecChHHh-hccHHHHHHHHHcCCC------EEEEEECCcceeccC
Confidence 36799999999999999762 3589999999995 32255555544 999 777777776 56543
Q ss_pred CCCC--------C-cccccHHHHHhhcCccEEEE-eCCCHHHHHHHHHHHHHHHHccCCCEEEEEee
Q 001713 440 DPMS--------G-RSSQYCTDVAKALDAPIFHV-NGDDMEAVAHVCELAAEWRQTFHSDVVVDLVC 496 (1021)
Q Consensus 440 ~~~~--------~-rs~~~~sd~Aka~g~p~~~V-dG~D~eAV~~a~~~A~e~rr~~~gPvlIe~vt 496 (1021)
.... . ....++..+|++||++.++| +++|++++.++++.|.+ .++|+||++.+
T Consensus 114 ~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~~l~~~~~al~~a~~----~~gp~lI~v~~ 176 (178)
T cd02008 114 GQPHPGTGKTLTEPTTVIDIEALVRAIGVKRVVVVDPYDLKAIREELKEALA----VPGVSVIIAKR 176 (178)
T ss_pred CCCCCCCcccccCCCCccCHHHHHHHCCCCEEEecCccCHHHHHHHHHHHHh----CCCCEEEEEeC
Confidence 2110 0 02357899999999999999 88999988888888863 47899999864
No 70
>PF02775 TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; InterPro: IPR011766 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the C-terminal TPP binding domain of TPP enzymes.; GO: 0003824 catalytic activity, 0030976 thiamine pyrophosphate binding; PDB: 2WVA_V 1ZPD_F 2WVG_B 2WVH_B 3OE1_D 2NXW_A 2Q5L_B 2Q5Q_B 2Q5J_A 2Q5O_A ....
Probab=98.90 E-value=1.1e-09 Score=110.26 Aligned_cols=111 Identities=23% Similarity=0.207 Sum_probs=87.1
Q ss_pred cCCcccccceeehHHHHhHHhcCCCCCCCcEEEEEeCccccCCccHHHHHHHhc--CCCCCCcccEEEEEEcCC-ccccc
Q 001713 363 PSHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS--ALPNYSIGGTIHIVVNNQ-VAFTT 439 (1021)
Q Consensus 363 pShlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDgA~sGqG~v~EalnlA--~LP~y~~GGvI~Vv~NNq-~g~tT 439 (1021)
-+.+|..+|.|+|+++|... .-+|++.|||+|. -...|-.+.+ ++| +++||.||+ ||++-
T Consensus 27 ~g~mG~~~~~aiGa~~a~p~---------~~vv~i~GDG~f~--~~~~el~ta~~~~~~------v~~vv~nN~~~~~~~ 89 (153)
T PF02775_consen 27 FGSMGYALPAAIGAALARPD---------RPVVAITGDGSFL--MSLQELATAVRYGLP------VVIVVLNNGGYGMTG 89 (153)
T ss_dssp TT-TTTHHHHHHHHHHHSTT---------SEEEEEEEHHHHH--HHGGGHHHHHHTTSS------EEEEEEESSBSHHHH
T ss_pred ccccCCHHHhhhHHHhhcCc---------ceeEEecCCccee--eccchhHHHhhccce------EEEEEEeCCcceEec
Confidence 35699999999999998442 6799999999996 4466766666 899 888888887 55542
Q ss_pred C----CCC---------CcccccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEE
Q 001713 440 D----PMS---------GRSSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDL 494 (1021)
Q Consensus 440 ~----~~~---------~rs~~~~sd~Aka~g~p~~~VdG~D~eAV~~a~~~A~e~rr~~~gPvlIe~ 494 (1021)
. ... .....++..+|+++|+++++|+..|++++..+.++|+ +.++|+|||+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~~~el~~al~~a~----~~~gp~vIeV 153 (153)
T PF02775_consen 90 GQQTPFGGGRFSGVDGKTFPNPDFAALAEAFGIKGARVTTPDPEELEEALREAL----ESGGPAVIEV 153 (153)
T ss_dssp HHHHHTTSTCHHSTBTTTSTTCGHHHHHHHTTSEEEEESCHSHHHHHHHHHHHH----HSSSEEEEEE
T ss_pred cccccCcCcccccccccccccCCHHHHHHHcCCcEEEEccCCHHHHHHHHHHHH----hCCCcEEEEc
Confidence 1 111 0334678899999999999999888899998888887 6789999996
No 71
>PRK07524 hypothetical protein; Provisional
Probab=98.89 E-value=3.5e-09 Score=127.34 Aligned_cols=115 Identities=18% Similarity=0.133 Sum_probs=90.5
Q ss_pred CCcccccceeehHHHHhHHhcCCCCCCCcEEEEEeCccccCCccHHHHHHHhc--CCCCCCcccEEEEEEcC-Cccccc-
Q 001713 364 SHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS--ALPNYSIGGTIHIVVNN-QVAFTT- 439 (1021)
Q Consensus 364 Shlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDgA~sGqG~v~EalnlA--~LP~y~~GGvI~Vv~NN-q~g~tT- 439 (1021)
+.+|.++|.|+|+++|... ..+|++.|||+|. ..+.|-...+ +|| +++||.|| .||+..
T Consensus 407 g~mG~~lp~aiGa~lA~p~---------~~vv~i~GDG~f~--~~~~el~ta~~~~lp------i~~vV~NN~~~g~i~~ 469 (535)
T PRK07524 407 GTLGYGLPAAIGAALGAPE---------RPVVCLVGDGGLQ--FTLPELASAVEADLP------LIVLLWNNDGYGEIRR 469 (535)
T ss_pred ccccchHHHHHHHHHhCCC---------CcEEEEEcchHHh--hhHHHHHHHHHhCCC------eEEEEEECCchHHHHH
Confidence 5699999999999999632 5799999999995 6677755444 999 89988888 577542
Q ss_pred --------CCCCCcccccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeeeccCC
Q 001713 440 --------DPMSGRSSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYRRFG 501 (1021)
Q Consensus 440 --------~~~~~rs~~~~sd~Aka~g~p~~~VdG~D~eAV~~a~~~A~e~rr~~~gPvlIe~vtYR~~G 501 (1021)
+.......+++..+|++||++++.|+ +++++..+.+.|+ +.++|+|||+.++|+.|
T Consensus 470 ~~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~~v~--~~~el~~al~~a~----~~~~p~liev~~~~~~~ 533 (535)
T PRK07524 470 YMVARDIEPVGVDPYTPDFIALARAFGCAAERVA--DLEQLQAALRAAF----ARPGPTLIEVDQACWFA 533 (535)
T ss_pred HHHHhcCCccccCCCCCCHHHHHHHCCCcEEEeC--CHHHHHHHHHHHH----hCCCCEEEEEECCcccc
Confidence 11111234678999999999999996 7888888877776 46899999999999886
No 72
>PRK07119 2-ketoisovalerate ferredoxin reductase; Validated
Probab=98.89 E-value=1.1e-07 Score=109.08 Aligned_cols=219 Identities=11% Similarity=0.091 Sum_probs=136.6
Q ss_pred EecCccchHHHHHHHHhhccCCCCcceEehhhhhhhHhhHHHHHHHHHhhhhhhh-cCccceEEEeCc-cCCCCC---cC
Q 001713 701 VSNSSLSEFGVLGFELGYSMENPNSLVMWEAQFGDFANGAQVIFDQFVNSGESKW-LRQSGLVVMLPH-GYDGQG---PE 775 (1021)
Q Consensus 701 V~nspLSE~~vlGfe~G~a~~g~~~lviwEaqFgDF~n~Aq~~iDqfi~s~~~kw-~~~~~lV~~lPh-G~~G~G---pe 775 (1021)
++- .=+|-+.++.++|+|++|-|.++ +.-|-....+ .-++ ..+ +...|+||.+-. +.-+-| ++
T Consensus 51 ~vq-~E~E~aA~~~a~GAs~aG~Ra~t---aTSg~Gl~lm---~E~l-----~~a~~~e~P~v~v~v~R~~p~~g~t~~e 118 (352)
T PRK07119 51 FVQ-AESEVAAINMVYGAAATGKRVMT---SSSSPGISLK---QEGI-----SYLAGAELPCVIVNIMRGGPGLGNIQPS 118 (352)
T ss_pred EEe-eCcHHHHHHHHHHHHhhCCCEEe---ecCcchHHHH---HHHH-----HHHHHccCCEEEEEeccCCCCCCCCcch
Confidence 444 77999999999999999999999 5544433333 1111 122 235788887644 211222 23
Q ss_pred CcCchhhHhhhccCCCCCcccCCCchhhhcccccCeEEEecCCHHHHHHHHHHHHh--cCCCCcEEEEeeccccCCcccc
Q 001713 776 HSSARLERFLQMSDDNPYVIPEMDSTLRTQIQECNWQIVNVTTPANYFHVLRRQIH--REFRKPLVVMSPKNLLRHKECK 853 (1021)
Q Consensus 776 HSs~r~Er~Lql~~e~~~~~~~ipg~~~~~~~~~Nl~Vv~pstpad~fhlLrrqi~--~~~~kPliv~~pK~Llr~~~~~ 853 (1021)
|++. +.++-. .-|-+.+|.|+.|+|+.++|.+.+.+.. .+++-|+|++..+.|- |-...
T Consensus 119 q~D~----~~~~~~--------------~ghgd~~~~vl~p~~~qEa~d~~~~Af~lAE~~~~PViv~~D~~ls-h~~~~ 179 (352)
T PRK07119 119 QGDY----FQAVKG--------------GGHGDYRLIVLAPSSVQEMVDLTMLAFDLADKYRNPVMVLGDGVLG-QMMEP 179 (352)
T ss_pred hHHH----HHHHhc--------------CCCCCcceEEEeCCCHHHHHHHHHHHHHHHHHhCCCEEEEcchhhh-Cceee
Confidence 4333 222100 0122456999999999999999999865 3578999999999763 33222
Q ss_pred CCcccccccCCCCC-CCCCCCc---ceEe--------------------ecCc----cc-cccCCCCCeEEEEeechhHH
Q 001713 854 SNLSEFDDVQGHPG-FDKQGTR---FKRL--------------------IKDQ----NE-HSDLEEGIRRLILCSGKVYY 904 (1021)
Q Consensus 854 s~~~e~~~~~~~~~-~~~~~~~---f~~v--------------------i~~~----~~-~~~~~~g~~~~Iv~~Gk~~~ 904 (1021)
..+.+......+|. +..++.. .... +... .. .....++.|++|||||.++.
T Consensus 180 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~e~~~~~dad~~iva~Gs~~~ 259 (352)
T PRK07119 180 VEFPPRKKRPLPPKDWAVTGTKGRRKNIITSLFLDPEELEKHNLRLQEKYAKIEENEVRYEEYNTEDAELVLVAYGTSAR 259 (352)
T ss_pred ecCCchhhcccCCCCCccCCCCCCceeccCCcccCHHHHHHHHHHHHHHHHHHHhhCCcceeecCCCCCEEEEEcCccHH
Confidence 11211110011110 1111110 0000 0000 00 00012468899999999999
Q ss_pred HHHHHHHHc--CCCcEEEEEecccCCCCHHHHHHHHHcCCCceEEEEecC
Q 001713 905 ELYEERKKH--SASDIAICRVEQLCPFPYDLVQRELKRYPNAEVVWSQEE 952 (1021)
Q Consensus 905 ~l~~a~~~~--~~~~v~ii~le~L~Pfp~~~i~~~l~k~~~~~~vwvqEe 952 (1021)
.++++.+.+ .++++.+|++++|+|||.++|.+.++++.++ +++++.
T Consensus 260 ~a~eA~~~L~~~Gi~v~vi~~~~l~Pfp~~~i~~~l~~~k~V--ivvE~n 307 (352)
T PRK07119 260 IAKSAVDMAREEGIKVGLFRPITLWPFPEKALEELADKGKGF--LSVEMS 307 (352)
T ss_pred HHHHHHHHHHHcCCeEEEEeeceecCCCHHHHHHHHhCCCEE--EEEeCC
Confidence 999998876 5789999999999999999999999999887 888663
No 73
>cd03371 TPP_PpyrDC Thiamine pyrophosphate (TPP) family, PpyrDC subfamily, TPP-binding module; composed of proteins similar to phosphonopyruvate decarboxylase (PpyrDC) proteins. PpyrDC is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. These proteins require TPP and divalent metal cation cofactors.
Probab=98.89 E-value=6.4e-09 Score=109.07 Aligned_cols=131 Identities=18% Similarity=0.157 Sum_probs=89.6
Q ss_pred CCcccccceeehHHHHhHHhcCCCCCCCcEEEEEeCccccCCccHHHHHHHhc--CCCCCCcccEEEEEEcCC-cccccC
Q 001713 364 SHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS--ALPNYSIGGTIHIVVNNQ-VAFTTD 440 (1021)
Q Consensus 364 Shlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDgA~sGqG~v~EalnlA--~LP~y~~GGvI~Vv~NNq-~g~tT~ 440 (1021)
+.+|..+|.|+|+++|... .-+|++.|||+|. -...|-...+ ++|. +++||.||+ ||+...
T Consensus 48 g~mG~~lpaAiGaala~p~---------~~Vv~i~GDG~f~--m~~~eL~ta~~~~l~~-----i~ivV~NN~~yg~~~~ 111 (188)
T cd03371 48 GSMGHASQIALGIALARPD---------RKVVCIDGDGAAL--MHMGGLATIGGLAPAN-----LIHIVLNNGAHDSVGG 111 (188)
T ss_pred CccccHHHHHHHHHHhCCC---------CcEEEEeCCcHHH--hhccHHHHHHHcCCCC-----cEEEEEeCchhhccCC
Confidence 6699999999999998642 4589999999994 3344544444 6632 788888887 565432
Q ss_pred CCCCcccccHHHHHhhcCccE-EEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeeeccCCCCCCCCCCCCCHHHHHH
Q 001713 441 PMSGRSSQYCTDVAKALDAPI-FHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYRRFGHNEIDEPSFTQPKMYKI 518 (1021)
Q Consensus 441 ~~~~rs~~~~sd~Aka~g~p~-~~VdG~D~eAV~~a~~~A~e~rr~~~gPvlIe~vtYR~~GHne~Ddp~ytqp~ey~~ 518 (1021)
........+.+.+|++||++. ..|+ +++++..++++|++ .++|+|||+.+-+..+ ++.. +..+++.+++.
T Consensus 112 ~~~~~~~~d~~~~A~a~G~~~~~~v~--~~~el~~al~~a~~----~~~p~lIev~~~~~~~-~~~~-~~~~~~~~~~~ 182 (188)
T cd03371 112 QPTVSFDVSLPAIAKACGYRAVYEVP--SLEELVAALAKALA----ADGPAFIEVKVRPGSR-SDLG-RPTTSPIENKE 182 (188)
T ss_pred cCCCCCCCCHHHHHHHcCCceEEecC--CHHHHHHHHHHHHh----CCCCEEEEEEecCCCC-CCCC-CCCCCHHHHHH
Confidence 111122468899999999997 5786 78999888888763 4789999999844332 2111 12445655543
No 74
>cd02005 TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family, PDC_IPDC subfamily, TPP-binding module; composed of proteins similar to pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC). PDC, a key enzyme in alcoholic fermentation, catalyzes the conversion of pyruvate to acetaldehyde and CO2. It is able to utilize other 2-oxo acids as substrates. In plants and various plant-associated bacteria, IPDC plays a role in the indole-3-pyruvic acid (IPA) pathway, a tryptophan-dependent biosynthetic route to indole-3-acetaldehyde (IAA). IPDC catalyzes the decarboxylation of IPA to IAA. Both PDC and IPDC depend on TPP and Mg2+ as cofactors.
Probab=98.88 E-value=6.1e-09 Score=108.61 Aligned_cols=114 Identities=17% Similarity=0.190 Sum_probs=85.2
Q ss_pred CCcccccceeehHHHHhHHhcCCCCCCCcEEEEEeCccccCCccHHHHHHHhc--CCCCCCcccEEEEEEcCCcccccCC
Q 001713 364 SHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS--ALPNYSIGGTIHIVVNNQVAFTTDP 441 (1021)
Q Consensus 364 Shlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDgA~sGqG~v~EalnlA--~LP~y~~GGvI~Vv~NNq~g~tT~~ 441 (1021)
+.+|..+|.|+|+++|... ..+|++.|||+| +..++|..+.+ ++|- +|+|+.||.|++....
T Consensus 50 g~mG~~l~~aiGaala~~~---------~~vv~i~GDG~f--~~~~~el~ta~~~~~p~-----~ivV~nN~~~~~~~~~ 113 (183)
T cd02005 50 GSIGYSVPAALGAALAAPD---------RRVILLVGDGSF--QMTVQELSTMIRYGLNP-----IIFLINNDGYTIERAI 113 (183)
T ss_pred hhHhhhHHHHHHHHHhCCC---------CeEEEEECCchh--hccHHHHHHHHHhCCCC-----EEEEEECCCcEEEEEe
Confidence 4589999999999998652 579999999999 46789988777 8993 4555555557865321
Q ss_pred CC------CcccccHHHHHhhcC----ccEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeeec
Q 001713 442 MS------GRSSQYCTDVAKALD----APIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYR 498 (1021)
Q Consensus 442 ~~------~rs~~~~sd~Aka~g----~p~~~VdG~D~eAV~~a~~~A~e~rr~~~gPvlIe~vtYR 498 (1021)
.. .....+...+|++|| +++++|+ +++++..+.++|++ ..++|+|||+.+.|
T Consensus 114 ~~~~~~~~~~~~~d~~~ia~a~G~~~~~~~~~v~--~~~el~~al~~a~~---~~~~p~liev~~~~ 175 (183)
T cd02005 114 HGPEASYNDIANWNYTKLPEVFGGGGGGLSFRVK--TEGELDEALKDALF---NRDKLSLIEVILPK 175 (183)
T ss_pred ccCCcCcccCCCCCHHHHHHHhCCCccccEEEec--CHHHHHHHHHHHHh---cCCCcEEEEEEcCc
Confidence 11 112357888999999 6888875 78888888888875 25789999999854
No 75
>cd02001 TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) family, ComE and PpyrDC subfamily, TPP-binding module; composed of proteins similar to sulfopyruvate decarboxylase beta subunit (ComE) and phosphonopyruvate decarboxylase (Ppyr decarboxylase). Methanococcus jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits which, catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. Ppyr decarboxylase is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. Ppyr decarboxylase and ComDE require TPP and divalent metal cation cofactors.
Probab=98.87 E-value=7.6e-09 Score=105.48 Aligned_cols=111 Identities=14% Similarity=0.071 Sum_probs=82.1
Q ss_pred CCcccccceeehHHHHhHHhcCCCCCCCcEEEEEeCccccCCccHHHHHHHhc-CCCCCCcccEEEEEEcCC-cccccCC
Q 001713 364 SHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS-ALPNYSIGGTIHIVVNNQ-VAFTTDP 441 (1021)
Q Consensus 364 Shlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDgA~sGqG~v~EalnlA-~LP~y~~GGvI~Vv~NNq-~g~tT~~ 441 (1021)
+.+|.++|.|+|+++|.+ .-+||+.|||+|.-.....+|+.-- ++| +++||.||+ ||++...
T Consensus 42 gsmG~~lp~AiGa~~a~~----------~~Vv~i~GDG~f~m~~~el~t~~~~~~~~------i~~vV~nN~~~g~~~~~ 105 (157)
T cd02001 42 GSMGLAGSIGLGLALGLS----------RKVIVVDGDGSLLMNPGVLLTAGEFTPLN------LILVVLDNRAYGSTGGQ 105 (157)
T ss_pred cchhhHHHHHHHHHhcCC----------CcEEEEECchHHHhcccHHHHHHHhcCCC------EEEEEEeCccccccCCc
Confidence 459999999999999863 2489999999994122223343322 489 888887777 6765422
Q ss_pred CCCcccccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEee
Q 001713 442 MSGRSSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVC 496 (1021)
Q Consensus 442 ~~~rs~~~~sd~Aka~g~p~~~VdG~D~eAV~~a~~~A~e~rr~~~gPvlIe~vt 496 (1021)
....+..++..+|++||++.+.|+ +++++..+.++|++ .++|++||+.+
T Consensus 106 ~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~----~~gp~vi~v~i 154 (157)
T cd02001 106 PTPSSNVNLEAWAAACGYLVLSAP--LLGGLGSEFAGLLA----TTGPTLLHAPI 154 (157)
T ss_pred CCCCCCCCHHHHHHHCCCceEEcC--CHHHHHHHHHHHHh----CCCCEEEEEEe
Confidence 222225789999999999999885 79999988888874 47899999987
No 76
>cd02010 TPP_ALS Thiamine pyrophosphate (TPP) family, Acetolactate synthase (ALS) subfamily, TPP-binding module; composed of proteins similar to Klebsiella pneumoniae ALS, a catabolic enzyme required for butanediol fermentation. ALS catalyzes the conversion of 2 molecules of pyruvate to acetolactate and carbon dioxide. ALS does not contain FAD, and requires TPP and a divalent metal cation for activity.
Probab=98.83 E-value=8.6e-09 Score=106.97 Aligned_cols=112 Identities=16% Similarity=0.139 Sum_probs=85.1
Q ss_pred CCcccccceeehHHHHhHHhcCCCCCCCcEEEEEeCccccCCccHHHHHHHhc--CCCCCCcccEEEEEEcCC-cccccC
Q 001713 364 SHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS--ALPNYSIGGTIHIVVNNQ-VAFTTD 440 (1021)
Q Consensus 364 Shlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDgA~sGqG~v~EalnlA--~LP~y~~GGvI~Vv~NNq-~g~tT~ 440 (1021)
+.+|..+|.|+|+++|... .-+|++.|||+|. -...|-...+ +|| +|+||.||+ ||+...
T Consensus 48 g~mG~~lp~aiGa~la~~~---------~~vv~i~GDG~f~--m~~~eL~ta~~~~l~------vi~vV~NN~~~g~~~~ 110 (177)
T cd02010 48 ATMGVALPGAIGAKLVYPD---------RKVVAVSGDGGFM--MNSQELETAVRLKIP------LVVLIWNDNGYGLIKW 110 (177)
T ss_pred hhhhhHHHHHHHHHHhCCC---------CcEEEEEcchHHH--hHHHHHHHHHHHCCC------eEEEEEECCcchHHHH
Confidence 4589999999999998642 4699999999995 4556666666 899 787777776 776531
Q ss_pred ---------CCCCcccccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeeec
Q 001713 441 ---------PMSGRSSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYR 498 (1021)
Q Consensus 441 ---------~~~~rs~~~~sd~Aka~g~p~~~VdG~D~eAV~~a~~~A~e~rr~~~gPvlIe~vtYR 498 (1021)
........++..+|++||++.++|+ +++++..+.++|++ .++|+|||+.+-+
T Consensus 111 ~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~liev~~~~ 171 (177)
T cd02010 111 KQEKEYGRDSGVDFGNPDFVKYAESFGAKGYRIE--SADDLLPVLERALA----ADGVHVIDCPVDY 171 (177)
T ss_pred HHHHhcCCcccCcCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEecc
Confidence 0000123578889999999999996 78998888888864 5799999999843
No 77
>PRK06163 hypothetical protein; Provisional
Probab=98.82 E-value=2.4e-08 Score=105.94 Aligned_cols=112 Identities=13% Similarity=0.100 Sum_probs=84.3
Q ss_pred CCcccccceeehHHHHhHHhcCCCCCCCcEEEEEeCccccCCccHHHHHHHhc---CCCCCCcccEEEEEEcCC-ccccc
Q 001713 364 SHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS---ALPNYSIGGTIHIVVNNQ-VAFTT 439 (1021)
Q Consensus 364 Shlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDgA~sGqG~v~EalnlA---~LP~y~~GGvI~Vv~NNq-~g~tT 439 (1021)
+.+|..+|.|+|+++|... .-+||+.|||+|. -...|-..++ ++| +++||.||+ ||+.-
T Consensus 57 GsMG~glpaAiGaalA~p~---------r~Vv~i~GDG~f~--m~~~eL~Ta~~~~~lp------i~ivV~NN~~yg~~~ 119 (202)
T PRK06163 57 GSMGLAFPIALGVALAQPK---------RRVIALEGDGSLL--MQLGALGTIAALAPKN------LTIIVMDNGVYQITG 119 (202)
T ss_pred cccccHHHHHHHHHHhCCC---------CeEEEEEcchHHH--HHHHHHHHHHHhcCCC------eEEEEEcCCchhhcC
Confidence 4599999999999999642 4589999999994 5555655554 578 888888885 78643
Q ss_pred CCCC-CcccccHHHHHhhcCcc-EEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeeec
Q 001713 440 DPMS-GRSSQYCTDVAKALDAP-IFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYR 498 (1021)
Q Consensus 440 ~~~~-~rs~~~~sd~Aka~g~p-~~~VdG~D~eAV~~a~~~A~e~rr~~~gPvlIe~vtYR 498 (1021)
.... .....++..+|++||++ .++|. +++++..+.+.|++ .++|+|||+.+-+
T Consensus 120 ~~~~~~~~~~Df~~lA~a~G~~~~~~v~--~~~el~~al~~a~~----~~~p~lIeV~i~~ 174 (202)
T PRK06163 120 GQPTLTSQTVDVVAIARGAGLENSHWAA--DEAHFEALVDQALS----GPGPSFIAVRIDD 174 (202)
T ss_pred CccCCCCCCCCHHHHHHHCCCceEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEecC
Confidence 2111 11236789999999998 67776 78888888888863 4889999998843
No 78
>cd02003 TPP_IolD Thiamine pyrophosphate (TPP) family, IolD subfamily, TPP-binding module; composed of proteins similar to Rhizobium leguminosarum bv. viciae IolD. IolD plays an important role in myo-inositol catabolism.
Probab=98.80 E-value=6.2e-09 Score=110.42 Aligned_cols=112 Identities=17% Similarity=0.134 Sum_probs=83.0
Q ss_pred CCcccccceeehHHHHhHHhcCCCCCCCcEEEEEeCccccCCccHHHHHHHhc--CCCCCCcccEEEEEEcCC-cccccC
Q 001713 364 SHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS--ALPNYSIGGTIHIVVNNQ-VAFTTD 440 (1021)
Q Consensus 364 Shlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDgA~sGqG~v~EalnlA--~LP~y~~GGvI~Vv~NNq-~g~tT~ 440 (1021)
+.+|..+|.|+|+++|... .-+|++.|||+|. -...|-...+ +|| +++||.||+ ||+...
T Consensus 48 gsmG~~lpaAiGa~la~p~---------~~vv~i~GDGsf~--m~~~eL~Ta~~~~lp------v~ivV~NN~~~g~~~~ 110 (205)
T cd02003 48 SCMGYEIAAGLGAKLAKPD---------REVYVLVGDGSYL--MLHSEIVTAVQEGLK------IIIVLFDNHGFGCINN 110 (205)
T ss_pred chhhhHHHHHHHHHHhCCC---------CeEEEEEccchhh--ccHHHHHHHHHcCCC------CEEEEEECCccHHHHH
Confidence 4589999999999998642 4689999999996 3455666555 999 666666665 775320
Q ss_pred -------CCC-----C-----------cccccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeee
Q 001713 441 -------PMS-----G-----------RSSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCY 497 (1021)
Q Consensus 441 -------~~~-----~-----------rs~~~~sd~Aka~g~p~~~VdG~D~eAV~~a~~~A~e~rr~~~gPvlIe~vtY 497 (1021)
... . -...++..+|++||++.++|+ +++++..|.++|+ +.++|+|||+.+-
T Consensus 111 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~~v~--~~~el~~al~~a~----~~~gp~lIeV~v~ 184 (205)
T cd02003 111 LQESTGSGSFGTEFRDRDQESGQLDGALLPVDFAANARSLGARVEKVK--TIEELKAALAKAK----ASDRTTVIVIKTD 184 (205)
T ss_pred HHHHhcCccccchhcccccccccccCCCCCCCHHHHHHhCCCEEEEEC--CHHHHHHHHHHHH----hCCCCEEEEEEee
Confidence 000 0 123678899999999999995 7999988888876 4588999999984
Q ss_pred c
Q 001713 498 R 498 (1021)
Q Consensus 498 R 498 (1021)
+
T Consensus 185 ~ 185 (205)
T cd02003 185 P 185 (205)
T ss_pred c
Confidence 3
No 79
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=98.79 E-value=1.5e-08 Score=122.77 Aligned_cols=115 Identities=20% Similarity=0.174 Sum_probs=89.5
Q ss_pred CCcccccceeehHHHHhHHhcCCCCCCCcEEEEEeCccccCCccHHHHHHHhc---CCCCCCcccEEEEEEcC-Cccccc
Q 001713 364 SHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS---ALPNYSIGGTIHIVVNN-QVAFTT 439 (1021)
Q Consensus 364 Shlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDgA~sGqG~v~EalnlA---~LP~y~~GGvI~Vv~NN-q~g~tT 439 (1021)
+.+|.++|.|+|+++|... ..+|++.|||+|. .+...+.|+.+ +|| +++||.|| +||+..
T Consensus 430 gsmG~~lp~aiGa~la~p~---------~~vv~i~GDG~f~-~~~~e~~l~ta~~~~l~------~~ivv~NN~~yg~~~ 493 (569)
T PRK08327 430 GGLGWALGAALGAKLATPD---------RLVIATVGDGSFI-FGVPEAAHWVAERYGLP------VLVVVFNNGGWLAVK 493 (569)
T ss_pred CCCCcchHHHHHHhhcCCC---------CeEEEEecCccee-ecCcHHHHHHHHHhCCC------EEEEEEeCcccccch
Confidence 4599999999999988532 5799999999996 55433345544 999 88888888 577642
Q ss_pred C----------------C-CCCc-ccccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEee
Q 001713 440 D----------------P-MSGR-SSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVC 496 (1021)
Q Consensus 440 ~----------------~-~~~r-s~~~~sd~Aka~g~p~~~VdG~D~eAV~~a~~~A~e~rr~~~gPvlIe~vt 496 (1021)
. . .... ...++..+|++||+++++|+ +++++..+++.|++..+++++|+|||+.+
T Consensus 494 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~al~~a~~~~~~~~gp~liev~v 566 (569)
T PRK08327 494 EAVLEVYPEGYAARKGTFPGTDFDPRPDFAKIAEAFGGYGERVE--DPEELKGALRRALAAVRKGRRSAVLDVIV 566 (569)
T ss_pred hHHhhhCcccccccccccccccCCCCCCHHHHHHhCCCCceEeC--CHHHHHHHHHHHHHHHhcCCCcEEEEEEc
Confidence 1 0 0011 34578899999999999997 89999999999998887888999999975
No 80
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=98.79 E-value=1.6e-08 Score=122.74 Aligned_cols=111 Identities=23% Similarity=0.252 Sum_probs=87.8
Q ss_pred CCcccccceeehHHHHhHHhcCCCCCCCcEEEEEeCccccCCccHHHHHHHhc--CCCCCCcccEEEEEEcCC-cccccC
Q 001713 364 SHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS--ALPNYSIGGTIHIVVNNQ-VAFTTD 440 (1021)
Q Consensus 364 Shlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDgA~sGqG~v~EalnlA--~LP~y~~GGvI~Vv~NNq-~g~tT~ 440 (1021)
+.+|.++|.|+|+++|... ..+|++.|||+|. ..++|..+.. +|| +++||.||+ |++...
T Consensus 422 gsmG~~lp~aiGa~lA~p~---------~~vv~i~GDG~f~--~~~~el~Ta~~~~lp------i~~vV~NN~~~~~~~~ 484 (570)
T PRK06725 422 GTMGFGFPAAIGAQLAKEE---------ELVICIAGDASFQ--MNIQELQTIAENNIP------VKVFIINNKFLGMVRQ 484 (570)
T ss_pred ccccchhhHHHhhHhhcCC---------CeEEEEEecchhh--ccHHHHHHHHHhCCC------eEEEEEECCccHHHHH
Confidence 6699999999999998642 5699999999994 7778888878 999 999999998 665421
Q ss_pred ---------CC-CCcccccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeee
Q 001713 441 ---------PM-SGRSSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCY 497 (1021)
Q Consensus 441 ---------~~-~~rs~~~~sd~Aka~g~p~~~VdG~D~eAV~~a~~~A~e~rr~~~gPvlIe~vtY 497 (1021)
.. ......+++.+|++||+++++|+ +++++..+.+.|.+ .++|+|||+.+-
T Consensus 485 ~q~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~~l~~al~~a~~----~~~p~liev~id 545 (570)
T PRK06725 485 WQEMFYENRLSESKIGSPDFVKVAEAYGVKGLRAT--NSTEAKQVMLEAFA----HEGPVVVDFCVE 545 (570)
T ss_pred HHHHhcCCccccCcCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEeC
Confidence 00 01124678899999999999995 78888777777764 589999999983
No 81
>cd02009 TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) family, SHCHC synthase subfamily, TPP-binding module; composed of proteins similar to Escherichia coli 2-succinyl-6-hydroxyl-2,4-cyclohexadiene-1-carboxylic acid (SHCHC) synthase (also called MenD). SHCHC synthase plays a key role in the menaquinone biosynthetic pathway, converting isochorismate and 2-oxoglutarate to SHCHC, pyruvate and carbon dioxide. The enzyme requires TPP and a divalent metal cation for activity.
Probab=98.75 E-value=1.8e-08 Score=104.23 Aligned_cols=109 Identities=19% Similarity=0.132 Sum_probs=82.9
Q ss_pred CCcccccceeehHHHHhHHhcCCCCCCCcEEEEEeCccccCCccHHHHHHHhc--CCCCCCcccEEEEEEcCC-cccccC
Q 001713 364 SHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS--ALPNYSIGGTIHIVVNNQ-VAFTTD 440 (1021)
Q Consensus 364 Shlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDgA~sGqG~v~EalnlA--~LP~y~~GGvI~Vv~NNq-~g~tT~ 440 (1021)
+.+|..+|.|+|+++|. . .-+|++.|||+|. -...|-.+.+ ++| +++||.||+ ||+...
T Consensus 51 g~mG~~l~~aiGa~la~-~---------~~Vv~i~GDGsf~--m~~~eL~ta~~~~l~------v~ivVlNN~~~g~~~~ 112 (175)
T cd02009 51 SGIDGTLSTALGIALAT-D---------KPTVLLTGDLSFL--HDLNGLLLGKQEPLN------LTIVVINNNGGGIFSL 112 (175)
T ss_pred cchhhHHHHHHHHHhcC-C---------CCEEEEEehHHHH--HhHHHHHhccccCCC------eEEEEEECCCCchhee
Confidence 45889999999999995 1 3488999999995 5567777777 899 888888887 664221
Q ss_pred CCC---------Cc---ccccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEee
Q 001713 441 PMS---------GR---SSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVC 496 (1021)
Q Consensus 441 ~~~---------~r---s~~~~sd~Aka~g~p~~~VdG~D~eAV~~a~~~A~e~rr~~~gPvlIe~vt 496 (1021)
... .. ...++..+|++||++.++|+ +++++..+.++|++ .++|+|||+.+
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~lIev~v 174 (175)
T cd02009 113 LPQASFEDEFERLFGTPQGLDFEHLAKAYGLEYRRVS--SLDELEQALESALA----QDGPHVIEVKT 174 (175)
T ss_pred ccCCcccchhhhhhcCCCCCCHHHHHHHcCCCeeeCC--CHHHHHHHHHHHHh----CCCCEEEEEeC
Confidence 100 00 14578889999999999987 78888888887763 57899999975
No 82
>PRK08366 vorA 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=98.75 E-value=4.1e-07 Score=105.50 Aligned_cols=225 Identities=9% Similarity=0.077 Sum_probs=143.4
Q ss_pred ccchHHHHHHHHhhccCCCCcceEehhhhhhhHhhHHHHHHHHHhhhhhhhcCccceEEEeCc-cCCCCCcC---CcCch
Q 001713 705 SLSEFGVLGFELGYSMENPNSLVMWEAQFGDFANGAQVIFDQFVNSGESKWLRQSGLVVMLPH-GYDGQGPE---HSSAR 780 (1021)
Q Consensus 705 pLSE~~vlGfe~G~a~~g~~~lviwEaqFgDF~n~Aq~~iDqfi~s~~~kw~~~~~lV~~lPh-G~~G~Gpe---HSs~r 780 (1021)
.=||.+.++.++|+|++|-|.++ +.=|-=++.+ .+.+...+ +...|+|+..-. +.-+.++. |+..
T Consensus 55 ~E~E~aA~~~aiGAs~aGaRa~T---aTSg~Gl~lm---~E~l~~aa----~~~lPiVi~~~~R~~p~~~~~~~~q~D~- 123 (390)
T PRK08366 55 VESEHSAMAACIGASAAGARAFT---ATSAQGLALM---HEMLHWAA----GARLPIVMVDVNRAMAPPWSVWDDQTDS- 123 (390)
T ss_pred eCCHHHHHHHHHHHHhhCCCeEe---eeCcccHHHH---hhHHHHHH----hcCCCEEEEEeccCCCCCCCCcchhhHH-
Confidence 44899999999999999999999 5555434444 55544322 226899877632 33233344 4433
Q ss_pred hhHhhhccCCCCCcccCCCchhhhcccccCeEEEecCCHHHHHHHHHHHHh--cCCCCcEEEEeeccccCCccccCCccc
Q 001713 781 LERFLQMSDDNPYVIPEMDSTLRTQIQECNWQIVNVTTPANYFHVLRRQIH--REFRKPLVVMSPKNLLRHKECKSNLSE 858 (1021)
Q Consensus 781 ~Er~Lql~~e~~~~~~~ipg~~~~~~~~~Nl~Vv~pstpad~fhlLrrqi~--~~~~kPliv~~pK~Llr~~~~~s~~~e 858 (1021)
+ +.++.+|.++.|+|+.++|.+...+.. .+++-|++++..+.++-|-.....+.+
T Consensus 124 ---~--------------------~~~d~g~i~~~~~~~QEa~d~t~~Af~lAE~~~~PViv~~Dg~~~sh~~~~v~~~~ 180 (390)
T PRK08366 124 ---L--------------------AQRDTGWMQFYAENNQEVYDGVLMAFKVAETVNLPAMVVESAFILSHTYDVVEMIP 180 (390)
T ss_pred ---H--------------------HHhhcCEEEEeCCCHHHHHHHHHHHHHHHHHHCCCEEEEecCcccccccccccCCC
Confidence 1 123346999999999999999998865 468999999999988776554322100
Q ss_pred ------ccc---------cCCCCC----CCCCCCcceE--eecC-------------------cccc---ccC---CCCC
Q 001713 859 ------FDD---------VQGHPG----FDKQGTRFKR--LIKD-------------------QNEH---SDL---EEGI 892 (1021)
Q Consensus 859 ------~~~---------~~~~~~----~~~~~~~f~~--vi~~-------------------~~~~---~~~---~~g~ 892 (1021)
+.. .++||- .+.|+..+.. -+.. .+.. .+. .+..
T Consensus 181 ~~~v~~~~~~~~~~~~~~~~~~p~s~~~~~~~~~~~e~~~~~~~~~e~~~~~i~~~~~~~~k~~gr~~~~~~e~y~~edA 260 (390)
T PRK08366 181 QELVDEFLPPRKPLYSLADFDNPISVGALATPADYYEFRYKIAKAMEEAKKVIKEVGKEFGERFGRDYSQMIETYYTDDA 260 (390)
T ss_pred HHHHhhhcCccccccccCCCCCCcccccCCCCcceeeeeHhhhHHHHhHHHHHHHHHHHHHHHhCccccccceecCCCCC
Confidence 110 012221 1111111110 0000 0000 000 1357
Q ss_pred eEEEEeechhHHHHHHHHHHc--CCCcEEEEEecccCCCCHHHHHHHHHcCCCceEEEEecCCcccchHhhHHHHH
Q 001713 893 RRLILCSGKVYYELYEERKKH--SASDIAICRVEQLCPFPYDLVQRELKRYPNAEVVWSQEEPMNMGAYTYIAPRL 966 (1021)
Q Consensus 893 ~~~Iv~~Gk~~~~l~~a~~~~--~~~~v~ii~le~L~Pfp~~~i~~~l~k~~~~~~vwvqEe~~n~G~~~~v~~~i 966 (1021)
|.+|||+|..+..+.++.+.+ ++.++-++++++++|||.+.|.+.+++..++ +++ |+....|..+-+...+
T Consensus 261 e~~iV~~Gs~~~~~~eav~~lr~~G~kvg~l~i~~~~PfP~~~i~~~l~~~k~V--iVv-E~n~~~Gq~g~l~~ev 333 (390)
T PRK08366 261 DFVFMGMGSLMGTVKEAVDLLRKEGYKVGYAKVRWFRPFPKEELYEIAESVKGI--AVL-DRNFSFGQEGILFTEA 333 (390)
T ss_pred CEEEEEeCccHHHHHHHHHHHHhcCCceeeEEEeeecCCCHHHHHHHHhcCCEE--EEE-eCCCCCCcccHHHHHH
Confidence 899999999999999988876 5789999999999999999999999987665 666 5555545443333333
No 83
>TIGR03846 sulfopy_beta sulfopyruvate decarboxylase, beta subunit. Nearly every member of this protein family is the beta subunit, or else the C-terminal region, of sulfopyruvate decarboxylase, in an archaeal species capable of coenzyme M biosynthesis. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=98.75 E-value=2.9e-08 Score=103.59 Aligned_cols=109 Identities=17% Similarity=0.154 Sum_probs=79.9
Q ss_pred CCcccccceeehHHHHhHHhcCCCCCCCcEEEEEeCccccCCccHHHHHHHhc--C-CCCCCcccEEEEEEcCC-ccccc
Q 001713 364 SHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS--A-LPNYSIGGTIHIVVNNQ-VAFTT 439 (1021)
Q Consensus 364 Shlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDgA~sGqG~v~EalnlA--~-LP~y~~GGvI~Vv~NNq-~g~tT 439 (1021)
+.+|..+|.|+|+++|. . .-+||+.|||+|. -...|-...+ + +| +++||.||+ ||+.-
T Consensus 42 gsmG~~lpaAiGa~la~-~---------~~Vv~i~GDG~f~--m~~~el~ta~~~~~~p------v~~vV~NN~~yg~~~ 103 (181)
T TIGR03846 42 GSMGLASSIGLGLALAT-D---------RTVIVIDGDGSLL--MNLGVLPTIAAESPKN------LILVILDNGAYGSTG 103 (181)
T ss_pred cccccHHHHHHHHHHcC-C---------CcEEEEEcchHHH--hhhhHHHHHHHhCCCC------eEEEEEeCCcccccc
Confidence 45889999999999996 2 3599999999995 3335544445 6 58 888888888 67653
Q ss_pred CCCCCc-ccccHHHHHhhcCccEEE-EeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeee
Q 001713 440 DPMSGR-SSQYCTDVAKALDAPIFH-VNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCY 497 (1021)
Q Consensus 440 ~~~~~r-s~~~~sd~Aka~g~p~~~-VdG~D~eAV~~a~~~A~e~rr~~~gPvlIe~vtY 497 (1021)
...... ...++..+|++||++..+ | .+++++..+.+ |+ +.++|+|||+.+-
T Consensus 104 ~q~~~~~~~~d~~~lA~a~G~~~~~~v--~~~~~l~~al~-a~----~~~~p~li~v~~~ 156 (181)
T TIGR03846 104 NQPTPASRRTDLELVAKAAGIRNVEKV--ADEEELRDALK-AL----AMKGPTFIHVKVK 156 (181)
T ss_pred CcCCCCCCCCCHHHHHHHCCCCeEEEe--CCHHHHHHHHH-HH----cCCCCEEEEEEeC
Confidence 211111 245789999999999988 6 46788777764 44 4578999999873
No 84
>cd03375 TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor. In the TCA cycle, OGFOR catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA. In the reductive tricarboxylic acid cycle found in the anaerobic autotroph Hydrogenobacter thermophilus, OGFOR catalyzes the reductive carboxylation of succinyl-CoA to produce 2-oxoglutarate. Thauera aromatica OGFOR has been shown to provide reduced ferredoxin to benzoyl-CoA reductase, a key enzyme in the anaerobic metabolism of aromatic compounds. OGFOR is dependent on TPP and a divalent metal cation for activity.
Probab=98.74 E-value=4e-08 Score=103.45 Aligned_cols=113 Identities=19% Similarity=0.156 Sum_probs=85.4
Q ss_pred CCcccccceeehHHHHhHHhcCCCCCCCcEEEEEeCccccCCccHHHHHHHhc--CCCCCCcccEEEEEEcCC-cccccC
Q 001713 364 SHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS--ALPNYSIGGTIHIVVNNQ-VAFTTD 440 (1021)
Q Consensus 364 Shlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDgA~sGqG~v~EalnlA--~LP~y~~GGvI~Vv~NNq-~g~tT~ 440 (1021)
+.+|..+|.|+|+++|... .-+|++.|||++- +-.+.|..+.+ ++| +++||.||+ ||.+..
T Consensus 51 g~mG~glpaAiGa~la~p~---------r~Vv~i~GDGs~f-~m~~~eL~ta~~~~lp------v~iiVlnN~~yg~~~~ 114 (193)
T cd03375 51 TLHGRALAVATGVKLANPD---------LTVIVVSGDGDLA-AIGGNHFIHAARRNID------ITVIVHNNQIYGLTKG 114 (193)
T ss_pred hhhccHHHHHHHHHHhCCC---------CeEEEEeccchHh-hccHHHHHHHHHhCCC------eEEEEEcCcccccCCC
Confidence 4589999999999998642 5699999999953 45567777666 999 888888887 677642
Q ss_pred CCC-C---------------cccccHHHHHhhcCccEE-EEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEee
Q 001713 441 PMS-G---------------RSSQYCTDVAKALDAPIF-HVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVC 496 (1021)
Q Consensus 441 ~~~-~---------------rs~~~~sd~Aka~g~p~~-~VdG~D~eAV~~a~~~A~e~rr~~~gPvlIe~vt 496 (1021)
... . ....++..+|+++|++.+ ++.-.+++++..+.++|++ .++|+|||+..
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~iA~a~G~~~~~~~~v~~~~el~~al~~al~----~~gp~vIev~~ 183 (193)
T cd03375 115 QASPTTPEGFKTKTTPYGNIEEPFNPLALALAAGATFVARGFSGDIKQLKEIIKKAIQ----HKGFSFVEVLS 183 (193)
T ss_pred ccCCCCCCCCcccCCCCCCCCCCCCHHHHHHHCCCCEEEEEecCCHHHHHHHHHHHHh----cCCCEEEEEEC
Confidence 110 0 012578899999999985 2455689999988888874 58899999974
No 85
>cd03376 TPP_PFOR_porB_like Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria. PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The 36-kDa porB subunit contains the binding sites for the cofactors, TPP and a divalent metal cation, which are required for activity.
Probab=98.72 E-value=2.6e-08 Score=108.12 Aligned_cols=115 Identities=11% Similarity=0.023 Sum_probs=86.9
Q ss_pred ccCCcccccceeehHHHHhHHhcCCCCCCCcEEEEEeCccccCCccHHHHHHHhc--CCCCCCcccEEEEEEcCC-cccc
Q 001713 362 NPSHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS--ALPNYSIGGTIHIVVNNQ-VAFT 438 (1021)
Q Consensus 362 npShlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDgA~sGqG~v~EalnlA--~LP~y~~GGvI~Vv~NNq-~g~t 438 (1021)
+.+.+|.++|.|+|++.|... .-+|++.|||++. +-.+.|-.+.+ ++| +++||.||+ ||++
T Consensus 60 ~~gsmG~GlpaAiGa~~a~p~---------r~VV~i~GDG~~~-~m~~~eL~ta~~~~~p------v~~vVlNN~~yg~t 123 (235)
T cd03376 60 NAAAVASGIEAALKALGRGKD---------ITVVAFAGDGGTA-DIGFQALSGAAERGHD------ILYICYDNEAYMNT 123 (235)
T ss_pred CHHHHHHHHHHHHHHhccCCC---------CeEEEEEcCchHH-hhHHHHHHHHHHcCCC------eEEEEECCcccccC
Confidence 335788888888888666432 4689999999964 56678877766 999 999999999 6853
Q ss_pred cCCC------C---------------CcccccHHHHHhhcCccEEE-EeCCCHHHHHHHHHHHHHHHHccCCCEEEEEee
Q 001713 439 TDPM------S---------------GRSSQYCTDVAKALDAPIFH-VNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVC 496 (1021)
Q Consensus 439 T~~~------~---------------~rs~~~~sd~Aka~g~p~~~-VdG~D~eAV~~a~~~A~e~rr~~~gPvlIe~vt 496 (1021)
.-.. . .....++..+|+++|++.+. ++..+++++..+.++|++ ..+|+|||+.+
T Consensus 124 g~q~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~iA~a~G~~~~~~~~v~~~~el~~al~~a~~----~~gP~lIev~~ 199 (235)
T cd03376 124 GIQRSGSTPYGAWTTTTPVGKVSFGKKQPKKDLPLIMAAHNIPYVATASVAYPEDLYKKVKKALS----IEGPAYIHILS 199 (235)
T ss_pred CCCCCCCCCCCCEeecCCCCccccccccccCCHHHHHHHcCCcEEEEEcCCCHHHHHHHHHHHHh----CCCCEEEEEEC
Confidence 2100 0 01225788999999999874 677899999988888884 57899999975
No 86
>PRK09622 porA pyruvate flavodoxin oxidoreductase subunit alpha; Reviewed
Probab=98.71 E-value=3.1e-07 Score=107.20 Aligned_cols=220 Identities=15% Similarity=0.149 Sum_probs=143.2
Q ss_pred chHHHHHHHHhhccCCCCcceEehhhhhhhHhhHHHHHHHHHhhhhhhhcCccceEEEeCccCC-C---CCcCCcCchhh
Q 001713 707 SEFGVLGFELGYSMENPNSLVMWEAQFGDFANGAQVIFDQFVNSGESKWLRQSGLVVMLPHGYD-G---QGPEHSSARLE 782 (1021)
Q Consensus 707 SE~~vlGfe~G~a~~g~~~lviwEaqFgDF~n~Aq~~iDqfi~s~~~kw~~~~~lV~~lPhG~~-G---~GpeHSs~r~E 782 (1021)
||-+.++.++|+|++|-|.++ +.=|-=++.+ .+.+...+ +...|+|+..-.+.. . --++|+..
T Consensus 64 ~E~~A~~~~~GAs~aGaRa~T---aTS~~Gl~lm---~E~l~~aa----~~~~P~V~~~~~R~~~~~~~i~~d~~D~--- 130 (407)
T PRK09622 64 SEHAAMSACVGAAAAGGRVAT---ATSSQGLALM---VEVLYQAS----GMRLPIVLNLVNRALAAPLNVNGDHSDM--- 130 (407)
T ss_pred cHHHHHHHHHHHHhhCcCEEe---ecCcchHHHH---hhHHHHHH----HhhCCEEEEEeccccCCCcCCCchHHHH---
Confidence 999999999999999999998 5555434444 55544221 346898888765331 1 11233322
Q ss_pred HhhhccCCCCCcccCCCchhhhcccccCeEEEecCCHHHHHHHHHHHHhc--CC--CCcEEEEeeccccCCccc-cCCcc
Q 001713 783 RFLQMSDDNPYVIPEMDSTLRTQIQECNWQIVNVTTPANYFHVLRRQIHR--EF--RKPLVVMSPKNLLRHKEC-KSNLS 857 (1021)
Q Consensus 783 r~Lql~~e~~~~~~~ipg~~~~~~~~~Nl~Vv~pstpad~fhlLrrqi~~--~~--~kPliv~~pK~Llr~~~~-~s~~~ 857 (1021)
.+.++.+|.|+.|+|+.+.|.+...+..- .+ +-|++++....++-|-.. +..++
T Consensus 131 ---------------------~~~r~~g~ivl~p~s~QEa~d~~~~Af~lAE~~~~~~Pviv~~Dg~~~sh~~~~v~~~~ 189 (407)
T PRK09622 131 ---------------------YLSRDSGWISLCTCNPQEAYDFTLMAFKIAEDQKVRLPVIVNQDGFLCSHTAQNVRPLS 189 (407)
T ss_pred ---------------------HHHhcCCeEEEeCCCHHHHHHHHHHHHHHHHHhccCCCEEEEechhhhhCceeeecCCC
Confidence 11234579999999999999999998764 45 899999999998655222 11111
Q ss_pred -----c----ccc-----cCCCCCCCCC----CCcce--Eee-c--------------C----ccc--c---ccCCCCCe
Q 001713 858 -----E----FDD-----VQGHPGFDKQ----GTRFK--RLI-K--------------D----QNE--H---SDLEEGIR 893 (1021)
Q Consensus 858 -----e----~~~-----~~~~~~~~~~----~~~f~--~vi-~--------------~----~~~--~---~~~~~g~~ 893 (1021)
+ |.. .+++|....+ ...+. .-. . + .+. . ....++.|
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~k~~g~~y~~~e~~~~edad 269 (407)
T PRK09622 190 DEVAYQFVGEYQTKNSMLDFDKPVTYGAQTEEDWHFEHKAQLHHALMSSSSVIEEVFNDFAKLTGRKYNLVETYQLEDAE 269 (407)
T ss_pred HHHHhhccCcccccccccCCCCCccCCCCCCCCeeEEechhcchhhhhhHHHHHHHHHHHHHHhCCCCCceeecCCCCCC
Confidence 0 100 0112211110 00000 000 0 0 000 0 00124678
Q ss_pred EEEEeechhHHHHHHHHHHc--CCCcEEEEEecccCCCCHHHHHHHHHcCCCceEEEEecCCcccchHhhH
Q 001713 894 RLILCSGKVYYELYEERKKH--SASDIAICRVEQLCPFPYDLVQRELKRYPNAEVVWSQEEPMNMGAYTYI 962 (1021)
Q Consensus 894 ~~Iv~~Gk~~~~l~~a~~~~--~~~~v~ii~le~L~Pfp~~~i~~~l~k~~~~~~vwvqEe~~n~G~~~~v 962 (1021)
++|||+|.++..+.++.+.+ +++++.+|++++++|||.+.|.+.++++.++ ++++|...++|.+..+
T Consensus 270 ~~iV~~Gs~~~~a~ea~~~L~~~G~kvgvi~~r~~~Pfp~~~l~~~l~~~k~V--vVvE~~~~~Gg~G~l~ 338 (407)
T PRK09622 270 VAIVALGTTYESAIVAAKEMRKEGIKAGVATIRVLRPFPYERLGQALKNLKAL--AILDRSSPAGAMGALF 338 (407)
T ss_pred EEEEEEChhHHHHHHHHHHHHhCCCCeEEEEeeEhhhCCHHHHHHHHhcCCEE--EEEeCCCCCCCccHHH
Confidence 99999999999998888776 4789999999999999999999999888876 8888887777776433
No 87
>PF13292 DXP_synthase_N: 1-deoxy-D-xylulose-5-phosphate synthase; PDB: 2O1X_C 2O1S_B.
Probab=98.70 E-value=2.8e-08 Score=107.90 Aligned_cols=118 Identities=21% Similarity=0.340 Sum_probs=82.3
Q ss_pred cCCcccccceeehHHHHhHHhcCCCCCCCcEEEEEeCccccCCccHHHHHHHhc---CCCCCCcccEEEEEEcCCccccc
Q 001713 363 PSHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS---ALPNYSIGGTIHIVVNNQVAFTT 439 (1021)
Q Consensus 363 pShlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDgA~sGqG~v~EalnlA---~LP~y~~GGvI~Vv~NNq~g~tT 439 (1021)
.+|-+..++.|+|+|.|+...+.+ .-+|+++||||+. -|+.+|+||-+ +-+ +|.|+.+|+..|+-
T Consensus 110 ~GHsstsiSaa~Gma~ar~l~~~~-----~~vVaVIGDGalt-~Gma~EALN~~g~~~~~------liVILNDN~mSIs~ 177 (270)
T PF13292_consen 110 AGHSSTSISAALGMAVARDLKGED-----RKVVAVIGDGALT-GGMAFEALNNAGHLKSN------LIVILNDNEMSISP 177 (270)
T ss_dssp -SSSS-HHHHHHHHHHHHHHHTS--------EEEEEETTGGG-SHHHHHHHHHHHHHT-S------EEEEEEE-SBSSSB
T ss_pred CCccHhHHHHHHHHHHHHHhcCCC-----CcEEEEECCcchh-HHHHHHHHHHHHhcCCC------EEEEEeCCCcccCC
Confidence 378999999999999999988765 7799999999999 89999999999 777 99999999998875
Q ss_pred CCC-------CCccccc------------------------HHH--------HHhhcCccEE-EEeCCCHHHHHHHHHHH
Q 001713 440 DPM-------SGRSSQY------------------------CTD--------VAKALDAPIF-HVNGDDMEAVAHVCELA 479 (1021)
Q Consensus 440 ~~~-------~~rs~~~------------------------~sd--------~Aka~g~p~~-~VdG~D~eAV~~a~~~A 479 (1021)
+.. .-++++. ..+ +.+.+|+..+ .|||+|++++..+.+.+
T Consensus 178 nvGals~~L~~l~~~~~y~~~k~~~~~~l~~~~~~~~~~~r~~~s~K~~~~~lFe~LG~~Y~GPiDGHdl~~Li~~l~~~ 257 (270)
T PF13292_consen 178 NVGALSKYLSKLRSSPTYNKLKEDVKSLLKKIPPIEEFAKRIKESLKGFSPNLFEELGFDYIGPIDGHDLEELIEVLENA 257 (270)
T ss_dssp --SSHCCC-------------------------------------------CCCHHCT-EEEEEEETT-HHHHHHHHHHH
T ss_pred CcchHHHHHHhccchhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhhhHHHHHHcCCeEEeccCCCCHHHHHHHHHHH
Confidence 321 1111100 011 1233466655 47999999999887776
Q ss_pred HHHHHccCCCEEEEEee
Q 001713 480 AEWRQTFHSDVVVDLVC 496 (1021)
Q Consensus 480 ~e~rr~~~gPvlIe~vt 496 (1021)
. +.++|+||+++|
T Consensus 258 K----~~~gPvllHV~T 270 (270)
T PF13292_consen 258 K----DIDGPVLLHVIT 270 (270)
T ss_dssp C----CSSSEEEEEEE-
T ss_pred h----cCCCCEEEEEeC
Confidence 5 579999999987
No 88
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=98.70 E-value=4.3e-08 Score=119.15 Aligned_cols=110 Identities=25% Similarity=0.313 Sum_probs=86.4
Q ss_pred CCcccccceeehHHHHhHHhcCCCCCCCcEEEEEeCccccCCccHHHHHHHhc--CCCCCCcccEEEEEEcCC-ccccc-
Q 001713 364 SHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS--ALPNYSIGGTIHIVVNNQ-VAFTT- 439 (1021)
Q Consensus 364 Shlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDgA~sGqG~v~EalnlA--~LP~y~~GGvI~Vv~NNq-~g~tT- 439 (1021)
+.+|.++|.|+|+++|... ..+||+.|||+|. -...|....+ +|| +++||.||+ ||+..
T Consensus 408 gsmG~~~paAiGa~la~p~---------~~vv~i~GDGsf~--~~~~el~Ta~~~~lp------v~~vV~NN~~~g~i~~ 470 (578)
T PRK06546 408 GSMANALPHAIGAQLADPG---------RQVISMSGDGGLS--MLLGELLTVKLYDLP------VKVVVFNNSTLGMVKL 470 (578)
T ss_pred ccccchhHHHHHHHHhCCC---------CcEEEEEcCchHh--hhHHHHHHHHHhCCC------eEEEEEECCccccHHH
Confidence 4599999999999999652 5699999999995 5567766555 999 898888888 57641
Q ss_pred ----C--CCCC--cccccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEee
Q 001713 440 ----D--PMSG--RSSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVC 496 (1021)
Q Consensus 440 ----~--~~~~--rs~~~~sd~Aka~g~p~~~VdG~D~eAV~~a~~~A~e~rr~~~gPvlIe~vt 496 (1021)
. .... ....++..+|++||++.++|+ +++++..+.++|++ .++|+|||+.+
T Consensus 471 ~q~~~~~~~~~~~~~~~df~~lA~a~G~~~~~v~--~~~el~~al~~a~~----~~gp~lIev~~ 529 (578)
T PRK06546 471 EMLVDGLPDFGTDHPPVDYAAIAAALGIHAVRVE--DPKDVRGALREAFA----HPGPALVDVVT 529 (578)
T ss_pred HHHhcCCCcccccCCCCCHHHHHHHCCCeeEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEe
Confidence 0 1111 124678899999999999997 79999888888764 58999999987
No 89
>PRK09627 oorA 2-oxoglutarate-acceptor oxidoreductase subunit OorA; Reviewed
Probab=98.70 E-value=8.4e-07 Score=102.47 Aligned_cols=215 Identities=15% Similarity=0.176 Sum_probs=130.4
Q ss_pred chHHHHHHHHhhccCCCCcceEehhhhhh-hHhhHHHHHHHHHhhhhhhh-cCccceEEEeCc-cC-CCCCcCCcCchhh
Q 001713 707 SEFGVLGFELGYSMENPNSLVMWEAQFGD-FANGAQVIFDQFVNSGESKW-LRQSGLVVMLPH-GY-DGQGPEHSSARLE 782 (1021)
Q Consensus 707 SE~~vlGfe~G~a~~g~~~lviwEaqFgD-F~n~Aq~~iDqfi~s~~~kw-~~~~~lV~~lPh-G~-~G~GpeHSs~r~E 782 (1021)
+|-+.++.++|.|++|-|.++ +.-|- |+.. -..+. .+ +...|+|+..=. |. .+.-|..+.. -.
T Consensus 55 ~E~aA~~~a~GAs~aG~Ra~t---aTSg~G~~lm-----~E~~~----~a~~~e~P~V~~~~~R~GpstG~p~~~~q-~D 121 (375)
T PRK09627 55 DEISGISVALGASMSGVKSMT---ASSGPGISLK-----AEQIG----LGFIAEIPLVIVNVMRGGPSTGLPTRVAQ-GD 121 (375)
T ss_pred CHHHHHHHHHHHHhhCCCEEe---ecCCchHHHH-----hhHHH----HHHhccCCEEEEEeccCCCcCCCCCccch-HH
Confidence 999999999999999999998 44322 2221 11221 11 235799997755 33 3333544421 01
Q ss_pred HhhhccCCCCCcccCCCchhhhcccccCeEEEecCCHHHHHHHHHHHHh--cCCCCcEEEEeeccccCCccccCCccccc
Q 001713 783 RFLQMSDDNPYVIPEMDSTLRTQIQECNWQIVNVTTPANYFHVLRRQIH--REFRKPLVVMSPKNLLRHKECKSNLSEFD 860 (1021)
Q Consensus 783 r~Lql~~e~~~~~~~ipg~~~~~~~~~Nl~Vv~pstpad~fhlLrrqi~--~~~~kPliv~~pK~Llr~~~~~s~~~e~~ 860 (1021)
-..|+- +-|-+..+.|+.|+|+.++|.+...+.. ..++-|+|++..+.| -|-.....+.|..
T Consensus 122 ~~~~~~---------------~~hgd~~~ivl~p~~~qEa~d~t~~Af~lAE~~~~PViv~~D~~l-sh~~~~v~~~~~~ 185 (375)
T PRK09627 122 VNQAKN---------------PTHGDFKSIALAPGSLEEAYTETVRAFNLAERFMTPVFLLLDETV-GHMYGKAVIPDLE 185 (375)
T ss_pred HHHHhc---------------CCCCCcCcEEEeCCCHHHHHHHHHHHHHHHHHHcCceEEecchHH-hCCeeeccCCChH
Confidence 121211 1122345789999999999999998764 468999999999965 3433221111100
Q ss_pred ccC---CCC-CCCCCCCcceEeec-----------------------------------------------------Ccc
Q 001713 861 DVQ---GHP-GFDKQGTRFKRLIK-----------------------------------------------------DQN 883 (1021)
Q Consensus 861 ~~~---~~~-~~~~~~~~f~~vi~-----------------------------------------------------~~~ 883 (1021)
..+ .++ .|..+...|.+.-. +..
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~k~~~k~~~~~~~~~ 265 (375)
T PRK09627 186 EVQKMIINRKEFDGDKKDYKPYGVAQDEPAVLNPFFKGYRYHVTGLHHGPIGFPTEDAKICGKLIDRLFNKIESHQDEIE 265 (375)
T ss_pred hccccccccccccCCcccccCCccCCCCCcccCCCCCCceEEecCccccccCCcCCCHHHHHHHHHHHHHHHHHHhhhcC
Confidence 000 000 01100000111000 000
Q ss_pred c-cccCCCCCeEEEEeechhHHHHHHHHHHc--CCCcEEEEEecccCCCCHHHHHHHHHcCCCceEEEEecC
Q 001713 884 E-HSDLEEGIRRLILCSGKVYYELYEERKKH--SASDIAICRVEQLCPFPYDLVQRELKRYPNAEVVWSQEE 952 (1021)
Q Consensus 884 ~-~~~~~~g~~~~Iv~~Gk~~~~l~~a~~~~--~~~~v~ii~le~L~Pfp~~~i~~~l~k~~~~~~vwvqEe 952 (1021)
. .....+..|++|||||..+..+.++.+.+ ++.+|.++++++++|||.+.|.+.++++.++ +++++.
T Consensus 266 ~~e~y~~~dAd~~IV~~GSt~~~~keAv~~lr~~G~kvg~l~~~~~~PfP~~~i~~~l~~~k~v--iVvE~n 335 (375)
T PRK09627 266 EYEEYMLDDAEILIIAYGSVSLSAKEAIKRLREEGIKVGLFRPITLWPSPAKKLKEIGDKFEKI--LVIELN 335 (375)
T ss_pred CceeeCCCCCCEEEEEeCCCHHHHHHHHHHHHhcCCeEEEEEeCeEECCCHHHHHHHHhcCCEE--EEEcCC
Confidence 0 00012357899999999999999988775 5688999999999999999999999998776 777654
No 90
>PRK09628 oorB 2-oxoglutarate-acceptor oxidoreductase subunit OorB; Reviewed
Probab=98.68 E-value=5.2e-08 Score=108.05 Aligned_cols=111 Identities=15% Similarity=0.098 Sum_probs=83.7
Q ss_pred cccccceeehHHHHhHHhcCCCCCCCcEEEEEeCccccCCccHHHHHHHhc--CCCCCCcccEEEEEEcCC-cccccCCC
Q 001713 366 LEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS--ALPNYSIGGTIHIVVNNQ-VAFTTDPM 442 (1021)
Q Consensus 366 lg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDgA~sGqG~v~EalnlA--~LP~y~~GGvI~Vv~NNq-~g~tT~~~ 442 (1021)
+|..+|.|+|+++|... .-+|++.|||++. .-...|+...+ ++| +++||.||+ ||++....
T Consensus 70 ~G~alPaAiGaklA~Pd---------r~VV~i~GDG~f~-~~g~~el~ta~r~nlp------i~iIV~NN~~yGmt~~Q~ 133 (277)
T PRK09628 70 HGRAVAYATGIKLANPD---------KHVIVVSGDGDGL-AIGGNHTIHGCRRNID------LNFILINNFIYGLTNSQT 133 (277)
T ss_pred cccHHHHHHHHHHHCCC---------CeEEEEECchHHH-HhhHHHHHHHHHhCcC------eEEEEEEChHHhcceecc
Confidence 68899999999999653 5699999999984 33467777777 999 999999988 68753100
Q ss_pred --------------CCc--ccccHHHHHhhcCccEE-EEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEee
Q 001713 443 --------------SGR--SSQYCTDVAKALDAPIF-HVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVC 496 (1021)
Q Consensus 443 --------------~~r--s~~~~sd~Aka~g~p~~-~VdG~D~eAV~~a~~~A~e~rr~~~gPvlIe~vt 496 (1021)
... ...++..+|+++|++.+ +..-.+++++..+.+.|++ .+||+|||+.+
T Consensus 134 ~~~t~~g~~~~~~~~g~~~~~~D~~~lA~a~G~~~va~~~v~~~~el~~al~~Al~----~~Gp~lIeV~~ 200 (277)
T PRK09628 134 SPTTPKGMWTVTAQYGNIDPTFDACKLATAAGASFVARESVIDPQKLEKLLVKGFS----HKGFSFFDVFS 200 (277)
T ss_pred cCCCCCCceeeeccCCCcCCCCCHHHHHHHCCCceEEEEccCCHHHHHHHHHHHHh----CCCCEEEEEcC
Confidence 001 12356899999999976 3344589999888888874 58999999974
No 91
>PRK08659 2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Validated
Probab=98.68 E-value=6.9e-07 Score=103.28 Aligned_cols=222 Identities=16% Similarity=0.256 Sum_probs=132.4
Q ss_pred EEecCccchHHHHHHHHhhccCCCCcceEehhhhhhhHhhHHHHHHHH-HhhhhhhhcCccceEEEeCc-cCCCCC-cCC
Q 001713 700 TVSNSSLSEFGVLGFELGYSMENPNSLVMWEAQFGDFANGAQVIFDQF-VNSGESKWLRQSGLVVMLPH-GYDGQG-PEH 776 (1021)
Q Consensus 700 rV~nspLSE~~vlGfe~G~a~~g~~~lviwEaqFgDF~n~Aq~~iDqf-i~s~~~kw~~~~~lV~~lPh-G~~G~G-peH 776 (1021)
.++-.- ||-+.++.++|+|++|-|.++ +--|- |=--+.-++ ++. +...|+||..-. +.-+.| |.+
T Consensus 50 ~~vq~E-~E~aA~~~a~GAs~aG~Ra~T---aTSg~---Gl~lm~E~~~~a~-----~~e~P~Viv~~~R~gp~tg~p~~ 117 (376)
T PRK08659 50 VFIQME-DEIASMAAVIGASWAGAKAMT---ATSGP---GFSLMQENIGYAA-----MTETPCVIVNVQRGGPSTGQPTK 117 (376)
T ss_pred EEEEeC-chHHHHHHHHhHHhhCCCeEe---ecCCC---cHHHHHHHHHHHH-----HcCCCEEEEEeecCCCCCCCCCC
Confidence 344445 999999999999999999998 21111 110011222 111 125799988743 332222 344
Q ss_pred cCchhhHhhhccCCCCCcccCCCchhhhcccccCeEEEecCCHHHHHHHHHHHHh--cCCCCcEEEEeeccccCCccccC
Q 001713 777 SSARLERFLQMSDDNPYVIPEMDSTLRTQIQECNWQIVNVTTPANYFHVLRRQIH--REFRKPLVVMSPKNLLRHKECKS 854 (1021)
Q Consensus 777 Ss~r~Er~Lql~~e~~~~~~~ipg~~~~~~~~~Nl~Vv~pstpad~fhlLrrqi~--~~~~kPliv~~pK~Llr~~~~~s 854 (1021)
++. -+-...+ +. -|-+..|.|+.|+|+.++|.+...+.. .+++-|++++..+.| -|-....
T Consensus 118 ~~q-~D~~~~~-------~~--------~hgd~~~ivl~p~~~QEa~d~~~~Af~lAE~~~~PViv~~D~~l-sh~~~~v 180 (376)
T PRK08659 118 PAQ-GDMMQAR-------WG--------THGDHPIIALSPSSVQECFDLTIRAFNLAEKYRTPVIVLADEVV-GHMREKV 180 (376)
T ss_pred cCc-HHHHHHh-------cc--------cCCCcCcEEEeCCCHHHHHHHHHHHHHHHHHHCCCEEEEechHh-hCCcccc
Confidence 333 1111110 10 122345999999999999999998865 368899999999954 3433221
Q ss_pred Cccccccc-------CCC-----CCCCC----------CC--CcceE--e-ecCc-------------------------
Q 001713 855 NLSEFDDV-------QGH-----PGFDK----------QG--TRFKR--L-IKDQ------------------------- 882 (1021)
Q Consensus 855 ~~~e~~~~-------~~~-----~~~~~----------~~--~~f~~--v-i~~~------------------------- 882 (1021)
.+.|.... +.. +.+.. |+ ..+.. . ..+.
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ 260 (376)
T PRK08659 181 VLPEPDEIEIIERKLPKVPPEAYKPFDDPEGGVPPMPAFGDGYRFHVTGLTHDERGFPTTDPETHEKLVRRLVRKIEKNR 260 (376)
T ss_pred cCCChhhccccccccCCCCccccCCCCCCCCCCCCCccCCCCCeEEeCCccccCCCCcCcCHHHHHHHHHHHHHHHHHHH
Confidence 11111000 000 00100 01 00000 0 0000
Q ss_pred ---cc-cccCCCCCeEEEEeechhHHHHHHHHHHc--CCCcEEEEEecccCCCCHHHHHHHHHcCCCceEEEEecC
Q 001713 883 ---NE-HSDLEEGIRRLILCSGKVYYELYEERKKH--SASDIAICRVEQLCPFPYDLVQRELKRYPNAEVVWSQEE 952 (1021)
Q Consensus 883 ---~~-~~~~~~g~~~~Iv~~Gk~~~~l~~a~~~~--~~~~v~ii~le~L~Pfp~~~i~~~l~k~~~~~~vwvqEe 952 (1021)
.. .....++.|++|||+|.++..+.++.+.+ ++++|.++++++|+|||.+.|.+.++++.++ ++++|.
T Consensus 261 ~~~~~~e~~~~~~ad~~iv~~Gs~~~~a~eAv~~Lr~~G~~v~~l~~~~l~Pfp~~~i~~~~~~~k~V--ivvEe~ 334 (376)
T PRK08659 261 DDIVLYEEYMLEDAEVVVVAYGSVARSARRAVKEAREEGIKVGLFRLITVWPFPEEAIRELAKKVKAI--VVPEMN 334 (376)
T ss_pred hhcCCceeecCCCCCEEEEEeCccHHHHHHHHHHHHhcCCceEEEEeCeecCCCHHHHHHHHhcCCEE--EEEeCC
Confidence 00 00112568899999999999999998876 5789999999999999999999999998776 777664
No 92
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=98.67 E-value=5e-08 Score=117.34 Aligned_cols=109 Identities=19% Similarity=0.204 Sum_probs=82.8
Q ss_pred CCcccccceeehHHHHhHHhcCCCCCCCcEEEEEeCccccCCccHHHHHHHhc---CCCCCCcccEEEEEEcCC-ccccc
Q 001713 364 SHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS---ALPNYSIGGTIHIVVNNQ-VAFTT 439 (1021)
Q Consensus 364 Shlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDgA~sGqG~v~EalnlA---~LP~y~~GGvI~Vv~NNq-~g~tT 439 (1021)
+.+|.++|.|+|+++|... ..+||++|||+|. .+ . +.|+.+ +|| +++||.||+ ||+..
T Consensus 407 g~mG~~lp~aiGa~la~p~---------~~vv~i~GDG~f~-~~-~-~eL~ta~~~~lp------~~~vv~NN~~~~~~~ 468 (530)
T PRK07092 407 GGLGYGLPAAVGVALAQPG---------RRVIGLIGDGSAM-YS-I-QALWSAAQLKLP------VTFVILNNGRYGALR 468 (530)
T ss_pred CcccchHHHHHHHHHhCCC---------CeEEEEEeCchHh-hh-H-HHHHHHHHhCCC------cEEEEEeChHHHHHH
Confidence 6799999999999998642 5689999999997 54 3 445555 999 899999998 88642
Q ss_pred C----------CCCCcccccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEee
Q 001713 440 D----------PMSGRSSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVC 496 (1021)
Q Consensus 440 ~----------~~~~rs~~~~sd~Aka~g~p~~~VdG~D~eAV~~a~~~A~e~rr~~~gPvlIe~vt 496 (1021)
. ........++..+|++||+++++|+ +++++..|.+.|. +.++|+|||+.+
T Consensus 469 ~~~~~~~~~~~~~~~~~~~d~~~~a~~~G~~~~~v~--~~~~l~~al~~a~----~~~~p~liev~~ 529 (530)
T PRK07092 469 WFAPVFGVRDVPGLDLPGLDFVALARGYGCEAVRVS--DAAELADALARAL----AADGPVLVEVEV 529 (530)
T ss_pred HHHHhhCCCCCCCCCCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHH----hCCCCEEEEEEc
Confidence 1 1111134678899999999999998 5677766666555 568999999975
No 93
>cd02018 TPP_PFOR Thiamine pyrophosphate (TPP family), Pyruvate ferredoxin/flavodoxin oxidoreductase (PFOR) subfamily, TPP-binding module; PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. PFORs can be homodimeric, heterodimeric, or heterotetrameric, depending on the organism. These enzymes are dependent on TPP and a divalent metal cation as cofactors.
Probab=98.64 E-value=7e-08 Score=104.84 Aligned_cols=119 Identities=13% Similarity=0.003 Sum_probs=84.9
Q ss_pred CCcccccceeehHHHHhHHhcCCCCCCCcEEEEEeCccccCCccHHHHHHHhc--CCCCCCcccEEEEEEcCC-cccccC
Q 001713 364 SHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS--ALPNYSIGGTIHIVVNNQ-VAFTTD 440 (1021)
Q Consensus 364 Shlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDgA~sGqG~v~EalnlA--~LP~y~~GGvI~Vv~NNq-~g~tT~ 440 (1021)
..+|.++|.|+|+++|+-.... .+.-+|++.|||++. +--+.|.++.. ++| +++||.||+ ||.+-.
T Consensus 64 g~mG~GlpaAiGA~~a~~~~~~----p~~~Vv~i~GDG~~~-~~g~~~l~ta~~~~l~------i~ivVlNN~~yg~~~~ 132 (237)
T cd02018 64 NAVASGLKRGLKARFPKDRELD----KKKDVVVIGGDGATY-DIGFGALSHSLFRGED------ITVIVLDNEVYSNTGG 132 (237)
T ss_pred HHHHHHHHHHHHhhcccccccC----CCCcEEEEeCchHHH-hccHHHHHHHHHcCCC------eEEEEECCccccCCCC
Confidence 6789999999999887221110 125699999999874 22255555555 999 999999998 676521
Q ss_pred CCC----------------CcccccHHHHHhhcCccEEE-EeCCCHHHHHHHHHHHHHHHHccCCCEEEEEee
Q 001713 441 PMS----------------GRSSQYCTDVAKALDAPIFH-VNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVC 496 (1021)
Q Consensus 441 ~~~----------------~rs~~~~sd~Aka~g~p~~~-VdG~D~eAV~~a~~~A~e~rr~~~gPvlIe~vt 496 (1021)
... .....++..+|+++|++.+. |+=.+++++..|+++|++ +.++|+|||+.+
T Consensus 133 q~~~~~~~g~~~~~~~~~~~~~~~D~~~iA~a~G~~~~~~~~v~~~~~l~~al~~al~---~~~GP~lI~v~i 202 (237)
T cd02018 133 QRSGATPLGADSKMAPAGKKEDKKDLVLIAATHGCVYVARLSPALKKHFLKVVKEAIS---RTDGPTFIHAYT 202 (237)
T ss_pred CCCCCCcCCCcccccCCCCcCCCCCHHHHHHHCCCCEEEEEccCCHHHHHHHHHHHHh---cCCCCEEEEEeC
Confidence 110 11235789999999999986 344578999888888874 368899999985
No 94
>PRK08266 hypothetical protein; Provisional
Probab=98.62 E-value=1e-07 Score=114.87 Aligned_cols=116 Identities=21% Similarity=0.231 Sum_probs=86.6
Q ss_pred CCcccccceeehHHHHhHHhcCCCCCCCcEEEEEeCccccCCccHHHHHHHhc--CCCCCCcccEEEEEEcCC-cccccC
Q 001713 364 SHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS--ALPNYSIGGTIHIVVNNQ-VAFTTD 440 (1021)
Q Consensus 364 Shlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDgA~sGqG~v~EalnlA--~LP~y~~GGvI~Vv~NNq-~g~tT~ 440 (1021)
+.+|..+|.|+|+++|... .-+||+.|||+|. .+ ..|-...+ +|| +++||.||+ ||+...
T Consensus 402 GsmG~~lp~aiGa~la~p~---------~~vv~v~GDG~f~-~~-~~eL~ta~~~~lp------v~ivv~NN~~y~~~~~ 464 (542)
T PRK08266 402 GTLGYGFPTALGAKVANPD---------RPVVSITGDGGFM-FG-VQELATAVQHNIG------VVTVVFNNNAYGNVRR 464 (542)
T ss_pred cccccHHHHHHHHHHhCCC---------CcEEEEEcchhhh-cc-HHHHHHHHHhCCC------eEEEEEeCCcchHHHH
Confidence 5699999999999888542 4689999999997 44 55554444 999 888888885 886431
Q ss_pred CC-----C----C-cccccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeeeccCCC
Q 001713 441 PM-----S----G-RSSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYRRFGH 502 (1021)
Q Consensus 441 ~~-----~----~-rs~~~~sd~Aka~g~p~~~VdG~D~eAV~~a~~~A~e~rr~~~gPvlIe~vtYR~~GH 502 (1021)
.. . . ....++..+|++||+++++|+ +++++..+.+.|+ +.++|+|||+.++|...+
T Consensus 465 ~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~al~~a~----~~~~p~liev~i~~~~~~ 530 (542)
T PRK08266 465 DQKRRFGGRVVASDLVNPDFVKLAESFGVAAFRVD--SPEELRAALEAAL----AHGGPVLIEVPVPRGSEA 530 (542)
T ss_pred HHHHhcCCCcccCCCCCCCHHHHHHHcCCeEEEeC--CHHHHHHHHHHHH----hCCCcEEEEEEecCCCCc
Confidence 10 0 0 123578899999999999997 4777777777665 457899999999887543
No 95
>PRK06154 hypothetical protein; Provisional
Probab=98.61 E-value=9.6e-08 Score=115.85 Aligned_cols=113 Identities=16% Similarity=0.130 Sum_probs=87.8
Q ss_pred CCcccccceeehHHHHhHHhcCCCCCCCcEEEEEeCccccCCccHHHHHHHhc--CCCCCCcccEEEEEEcCC-cccccC
Q 001713 364 SHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS--ALPNYSIGGTIHIVVNNQ-VAFTTD 440 (1021)
Q Consensus 364 Shlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDgA~sGqG~v~EalnlA--~LP~y~~GGvI~Vv~NNq-~g~tT~ 440 (1021)
+.+|..+|.|+|+++|... .-+|++.|||+|. -.+.|-..++ +|| +++||.||+ ||+-..
T Consensus 431 gsmG~glpaaiGa~la~p~---------r~Vv~i~GDG~f~--m~~~EL~Ta~r~~lp------i~~vV~NN~~yg~~~~ 493 (565)
T PRK06154 431 TQLGYGLGLAMGAKLARPD---------ALVINLWGDAAFG--MTGMDFETAVRERIP------ILTILLNNFSMGGYDK 493 (565)
T ss_pred cccccHHHHHHHHHHhCCC---------CcEEEEEcchHHh--ccHHHHHHHHHhCCC------eEEEEEECCccceeeh
Confidence 5699999999999998642 4699999999995 6667766666 999 888888888 674321
Q ss_pred C-------CC-CcccccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEee
Q 001713 441 P-------MS-GRSSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVC 496 (1021)
Q Consensus 441 ~-------~~-~rs~~~~sd~Aka~g~p~~~VdG~D~eAV~~a~~~A~e~rr~~~gPvlIe~vt 496 (1021)
. .. .....++..+|++||+++++|+ +++++..+++.|+++.+ .++|+|||+.+
T Consensus 494 ~~~~~~~~~~~~~~~~df~~lA~a~G~~g~~V~--~~~el~~al~~a~~~~~-~~~p~lIev~v 554 (565)
T PRK06154 494 VMPVSTTKYRATDISGDYAAIARALGGYGERVE--DPEMLVPALLRALRKVK-EGTPALLEVIT 554 (565)
T ss_pred hhhhhcCcccccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhhcc-CCCeEEEEEEe
Confidence 1 00 1113578899999999999998 68999999999986543 46799999987
No 96
>PRK12474 hypothetical protein; Provisional
Probab=98.61 E-value=1.2e-07 Score=113.69 Aligned_cols=110 Identities=14% Similarity=0.109 Sum_probs=85.7
Q ss_pred CCcccccceeehHHHHhHHhcCCCCCCCcEEEEEeCccccCCccHHHHHHHhc--CCCCCCcccEEEEEEcCC-cccccC
Q 001713 364 SHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS--ALPNYSIGGTIHIVVNNQ-VAFTTD 440 (1021)
Q Consensus 364 Shlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDgA~sGqG~v~EalnlA--~LP~y~~GGvI~Vv~NNq-~g~tT~ 440 (1021)
+.+|.++|.|+|+++|... .-+||+.|||+|. ...+|-..++ +|| +++||.||+ ||+...
T Consensus 389 gsmG~glpaAiGa~lA~p~---------r~vv~i~GDG~f~--m~~qEL~Ta~r~~lp------v~iiV~NN~~y~~i~~ 451 (518)
T PRK12474 389 GSIGQGLPLAAGAAVAAPD---------RKVVCPQGDGGAA--YTMQALWTMARENLD------VTVVIFANRSYAILNG 451 (518)
T ss_pred CccCccHHHHHHHHHHCCC---------CcEEEEEcCchhc--chHHHHHHHHHHCCC------cEEEEEcCCcchHHHH
Confidence 7899999999999999642 4589999999994 6677777777 999 888888888 776321
Q ss_pred ---------CCC-----C-cc--cccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEee
Q 001713 441 ---------PMS-----G-RS--SQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVC 496 (1021)
Q Consensus 441 ---------~~~-----~-rs--~~~~sd~Aka~g~p~~~VdG~D~eAV~~a~~~A~e~rr~~~gPvlIe~vt 496 (1021)
... . .. ..+.+.+|++||+++++|+ +++++..+.+.|+ +.++|+|||+.+
T Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~rv~--~~~eL~~al~~a~----~~~~p~liev~~ 518 (518)
T PRK12474 452 ELQRVGAQGAGRNALSMLDLHNPELNWMKIAEGLGVEASRAT--TAEEFSAQYAAAM----AQRGPRLIEAMI 518 (518)
T ss_pred HHHhhcCCCCCccccccccCCCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHH----cCCCCEEEEEEC
Confidence 000 0 01 2478899999999999997 5788888888876 357899999964
No 97
>PRK05778 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated
Probab=98.59 E-value=2.4e-07 Score=103.92 Aligned_cols=121 Identities=18% Similarity=0.197 Sum_probs=88.1
Q ss_pred CCcccccceeehHHHHhHHhcCCCCCCCcEEEEEeCccccCCccHHHHHHHhc--CCCCCCcccEEEEEEcCC-cccccC
Q 001713 364 SHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS--ALPNYSIGGTIHIVVNNQ-VAFTTD 440 (1021)
Q Consensus 364 Shlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDgA~sGqG~v~EalnlA--~LP~y~~GGvI~Vv~NNq-~g~tT~ 440 (1021)
+.+|..+|.|+|+++|... .-+|++.|||++-+-| ..|....+ ++| +++||.||+ ||.+..
T Consensus 70 g~mG~alpaAiGaklA~pd---------~~VV~i~GDG~~~~mg-~~eL~tA~r~nl~------i~vIV~NN~~YG~t~g 133 (301)
T PRK05778 70 TLHGRAIAFATGAKLANPD---------LEVIVVGGDGDLASIG-GGHFIHAGRRNID------ITVIVENNGIYGLTKG 133 (301)
T ss_pred hhhccHHHHHHHHHHHCCC---------CcEEEEeCccHHHhcc-HHHHHHHHHHCCC------cEEEEEeCchhhcccC
Confidence 3468999999999999653 4589999999973133 45666666 999 899999888 687642
Q ss_pred CC------CC----------cccccHHHHHhhcCccEE-EEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEe--eeccCC
Q 001713 441 PM------SG----------RSSQYCTDVAKALDAPIF-HVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLV--CYRRFG 501 (1021)
Q Consensus 441 ~~------~~----------rs~~~~sd~Aka~g~p~~-~VdG~D~eAV~~a~~~A~e~rr~~~gPvlIe~v--tYR~~G 501 (1021)
.. .. ....++..+|+++|++.+ ++...+++.+..+.++|++ .++|+|||+. |--.+|
T Consensus 134 Q~s~t~~~g~~~~~~~~g~~~~~~d~~~lA~a~G~~~va~~~v~~~~eL~~ai~~A~~----~~GpalIeV~~~C~~~~~ 209 (301)
T PRK05778 134 QASPTTPEGSKTKTAPYGNIEPPIDPCALALAAGATFVARSFAGDVKQLVELIKKAIS----HKGFAFIDVLSPCVTFNG 209 (301)
T ss_pred cccCCcCCCcccccccCCCcCCCCCHHHHHHHCCCCEEEEeccCCHHHHHHHHHHHHh----CCCCEEEEEcCCCCCCCC
Confidence 11 00 023578889999999986 4566689999988888874 5789999976 445555
Q ss_pred CCC
Q 001713 502 HNE 504 (1021)
Q Consensus 502 Hne 504 (1021)
.+.
T Consensus 210 ~~~ 212 (301)
T PRK05778 210 RNT 212 (301)
T ss_pred cCC
Confidence 443
No 98
>PRK11269 glyoxylate carboligase; Provisional
Probab=98.59 E-value=1.2e-07 Score=115.60 Aligned_cols=115 Identities=24% Similarity=0.250 Sum_probs=88.1
Q ss_pred CCcccccceeehHHHHhHHhcCCCCCCCcEEEEEeCccccCCccHHHHHHHhc--CCCCCCcccEEEEEEcCC-cccccC
Q 001713 364 SHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS--ALPNYSIGGTIHIVVNNQ-VAFTTD 440 (1021)
Q Consensus 364 Shlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDgA~sGqG~v~EalnlA--~LP~y~~GGvI~Vv~NNq-~g~tT~ 440 (1021)
+.+|.++|.|+|+++|.+. .-+||+.|||+|. -...|-...+ +|| +++||.||+ ||+-..
T Consensus 419 G~mG~glpaAiGa~la~p~---------r~Vv~i~GDG~f~--m~~~eL~Ta~~~~lp------v~~vV~NN~~~g~i~~ 481 (591)
T PRK11269 419 GPLGWTIPAALGVRAADPD---------RNVVALSGDYDFQ--FLIEELAVGAQFNLP------YIHVLVNNAYLGLIRQ 481 (591)
T ss_pred ccccchhhhHHhhhhhCCC---------CcEEEEEccchhh--cCHHHHHHHHHhCCC------eEEEEEeCCchhHHHH
Confidence 5699999999999999642 4599999999995 5556654444 999 888998888 664211
Q ss_pred C--------------CCCc------ccccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeee
Q 001713 441 P--------------MSGR------SSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCY 497 (1021)
Q Consensus 441 ~--------------~~~r------s~~~~sd~Aka~g~p~~~VdG~D~eAV~~a~~~A~e~rr~~~gPvlIe~vtY 497 (1021)
. .... ...+++.+|++||+++.+|. +++++..|.+.|++...+.++|+|||+.+-
T Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~lA~a~G~~~~~v~--~~~eL~~al~~a~~~~~~~~gp~lieV~v~ 556 (591)
T PRK11269 482 AQRAFDMDYCVQLAFENINSPELNGYGVDHVKVAEGLGCKAIRVF--KPEDIAPALEQAKALMAEFRVPVVVEVILE 556 (591)
T ss_pred HHHHhccCccceeeccccccccccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhhcccCCCcEEEEEEec
Confidence 0 0000 12578899999999999995 789999999988866545689999999983
No 99
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=98.56 E-value=1.3e-07 Score=115.28 Aligned_cols=115 Identities=18% Similarity=0.204 Sum_probs=88.2
Q ss_pred CCcccccceeehHHHHhHHhcCCCCCCCcEEEEEeCccccCCccHHHHHHHhc--CCCCCCcccEEEEEEcC-Cccccc-
Q 001713 364 SHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS--ALPNYSIGGTIHIVVNN-QVAFTT- 439 (1021)
Q Consensus 364 Shlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDgA~sGqG~v~EalnlA--~LP~y~~GGvI~Vv~NN-q~g~tT- 439 (1021)
+.+|.++|.|+|++.|... .-+|++.|||+|. -...|-.+.+ +|| +++||.|| .||+..
T Consensus 435 g~mG~glp~aiGa~la~p~---------r~vv~i~GDG~f~--~~~~el~Ta~~~~lp------v~ivV~NN~~y~~~~~ 497 (588)
T PRK07525 435 GNCGYAFPAIIGAKIACPD---------RPVVGFAGDGAWG--ISMNEVMTAVRHNWP------VTAVVFRNYQWGAEKK 497 (588)
T ss_pred cccccHHHHHHHHHHhCCC---------CcEEEEEcCchHh--ccHHHHHHHHHhCCC------eEEEEEeCchhHHHHH
Confidence 5699999999999998642 4699999999996 4478877776 999 88888777 477531
Q ss_pred --------CCC--CCcccccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeeec
Q 001713 440 --------DPM--SGRSSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYR 498 (1021)
Q Consensus 440 --------~~~--~~rs~~~~sd~Aka~g~p~~~VdG~D~eAV~~a~~~A~e~rr~~~gPvlIe~vtYR 498 (1021)
... +.....++..+|++||+++++|+ +++++..+++.|++.. +.++|+|||+.+-|
T Consensus 498 ~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~~~-~~~~p~lIev~~~~ 563 (588)
T PRK07525 498 NQVDFYNNRFVGTELDNNVSYAGIAEAMGAEGVVVD--TQEELGPALKRAIDAQ-NEGKTTVIEIMCNQ 563 (588)
T ss_pred HHHHHhCCCcccccCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhcC-CCCCcEEEEEEecc
Confidence 000 00123588899999999999996 7889999999888653 24689999999843
No 100
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=98.56 E-value=1.4e-07 Score=114.61 Aligned_cols=112 Identities=22% Similarity=0.266 Sum_probs=85.4
Q ss_pred CCcccccceeehHHHHhHHhcCCCCCCCcEEEEEeCccccCCccHHHHHHHhc--CCCCCCcccEEEEEEcCC-ccccc-
Q 001713 364 SHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS--ALPNYSIGGTIHIVVNNQ-VAFTT- 439 (1021)
Q Consensus 364 Shlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDgA~sGqG~v~EalnlA--~LP~y~~GGvI~Vv~NNq-~g~tT- 439 (1021)
+.||..+|.|+|++.|... .-+|++.|||+|. -.+.|-..++ +|| +++||.||+ ||+..
T Consensus 408 gsmG~glpaAiGa~la~p~---------r~Vv~i~GDGsf~--m~~~eL~Tavr~~lp------i~~VV~NN~~yg~i~~ 470 (575)
T TIGR02720 408 ATMGVGVPGAIAAKLNYPD---------RQVFNLAGDGAFS--MTMQDLLTQVQYHLP------VINIVFSNCTYGFIKD 470 (575)
T ss_pred chhhchHHHHHHHHHhCCC---------CcEEEEEcccHHH--hhHHHHHHHHHhCCC------eEEEEEeCCccHHHHH
Confidence 5689999999999988642 4689999999995 5667766665 999 787777776 88631
Q ss_pred -----CC-CC--CcccccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEee
Q 001713 440 -----DP-MS--GRSSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVC 496 (1021)
Q Consensus 440 -----~~-~~--~rs~~~~sd~Aka~g~p~~~VdG~D~eAV~~a~~~A~e~rr~~~gPvlIe~vt 496 (1021)
.. .. .....++..+|++||+++++|+ +++++..+.++|++ . +.++|+|||+.+
T Consensus 471 ~~~~~~~~~~~~~~~~~df~~iA~a~G~~~~~v~--~~~el~~al~~a~~-~-~~~~p~liev~i 531 (575)
T TIGR02720 471 EQEDTNQPLIGVDFNDADFAKIAEGVGAVGFRVN--KIEQLPAVFEQAKA-I-KQGKPVLIDAKI 531 (575)
T ss_pred HHHHhCCCcccccCCCCCHHHHHHHCCCEEEEeC--CHHHHHHHHHHHHh-h-CCCCcEEEEEEe
Confidence 10 00 1124678999999999999995 67888888888875 2 458899999987
No 101
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=98.56 E-value=1e-07 Score=114.94 Aligned_cols=113 Identities=23% Similarity=0.179 Sum_probs=88.5
Q ss_pred CCcccccceeehHHHHhHHhcCCCCCCCcEEEEEeCccccCCccHHHHHHHhc--CCCCCCcccEEEEEEcCC-cccccC
Q 001713 364 SHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS--ALPNYSIGGTIHIVVNNQ-VAFTTD 440 (1021)
Q Consensus 364 Shlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDgA~sGqG~v~EalnlA--~LP~y~~GGvI~Vv~NNq-~g~tT~ 440 (1021)
+.+|.++|.|+|+++|... .-+|++.|||+|. ....|-.... ++| +++||.||+ ||+...
T Consensus 408 GtMG~glPaAIGAkla~P~---------r~Vv~i~GDG~F~--m~~qEL~Ta~r~~lp------v~ivv~nN~~~g~v~~ 470 (550)
T COG0028 408 GTMGFGLPAAIGAKLAAPD---------RKVVAIAGDGGFM--MNGQELETAVRYGLP------VKIVVLNNGGYGMVRQ 470 (550)
T ss_pred ccccchHHHHHHHHhhCCC---------CcEEEEEcccHHh--ccHHHHHHHHHhCCC------EEEEEEECCccccchH
Confidence 4599999999999999772 5699999999996 5566655555 999 999999988 787652
Q ss_pred CCCC---------ccccc-HHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeeecc
Q 001713 441 PMSG---------RSSQY-CTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYRR 499 (1021)
Q Consensus 441 ~~~~---------rs~~~-~sd~Aka~g~p~~~VdG~D~eAV~~a~~~A~e~rr~~~gPvlIe~vtYR~ 499 (1021)
..+. ..... +..+|++||+.+++|+ +++++..+.++|+ +-.+|+|||+.+-+-
T Consensus 471 ~q~~~~~~~~~~~~~~~~~f~klAea~G~~g~~v~--~~~el~~al~~al----~~~~p~lidv~id~~ 533 (550)
T COG0028 471 WQELFYGGRYSGTDLGNPDFVKLAEAYGAKGIRVE--TPEELEEALEEAL----ASDGPVLIDVVVDPE 533 (550)
T ss_pred HHHHhcCCCcceeecCCccHHHHHHHcCCeeEEeC--CHHHHHHHHHHHH----hCCCCEEEEEEecCc
Confidence 2111 11122 7889999999999999 8999998888887 568899999988554
No 102
>PRK07586 hypothetical protein; Validated
Probab=98.55 E-value=1.8e-07 Score=111.98 Aligned_cols=110 Identities=16% Similarity=0.168 Sum_probs=83.5
Q ss_pred CCcccccceeehHHHHhHHhcCCCCCCCcEEEEEeCccccCCccHHHHHHHhc--CCCCCCcccEEEEEEcCC-cccccC
Q 001713 364 SHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS--ALPNYSIGGTIHIVVNNQ-VAFTTD 440 (1021)
Q Consensus 364 Shlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDgA~sGqG~v~EalnlA--~LP~y~~GGvI~Vv~NNq-~g~tT~ 440 (1021)
+.+|..+|.|+|+++|... .-+||+.|||+|. -...|--+.+ +|| +++||.||+ ||+-..
T Consensus 385 g~mG~~lpaaiGa~lA~p~---------r~Vv~i~GDGsf~--m~~~EL~Ta~~~~lp------v~ivV~NN~~y~~~~~ 447 (514)
T PRK07586 385 GAIGQGLPLATGAAVACPD---------RKVLALQGDGSAM--YTIQALWTQARENLD------VTTVIFANRAYAILRG 447 (514)
T ss_pred cccccHHHHHHHHHHhCCC---------CeEEEEEechHHH--hHHHHHHHHHHcCCC------CEEEEEeCchhHHHHH
Confidence 6799999999999999642 5699999999995 5667766666 999 777777777 775310
Q ss_pred ---------C-C------CCc-ccccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEee
Q 001713 441 ---------P-M------SGR-SSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVC 496 (1021)
Q Consensus 441 ---------~-~------~~r-s~~~~sd~Aka~g~p~~~VdG~D~eAV~~a~~~A~e~rr~~~gPvlIe~vt 496 (1021)
. . +.. ...++..+|++||+++++|+ +++++..+.++|+ +.++|+|||+.+
T Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~V~--~~~el~~al~~a~----~~~~p~liev~~ 514 (514)
T PRK07586 448 ELARVGAGNPGPRALDMLDLDDPDLDWVALAEGMGVPARRVT--TAEEFADALAAAL----AEPGPHLIEAVV 514 (514)
T ss_pred HHHHhcCCCCCccccccccCCCCCCCHHHHHHHCCCcEEEeC--CHHHHHHHHHHHH----cCCCCEEEEEEC
Confidence 0 0 011 13578899999999999996 6888887777776 457899999863
No 103
>PRK07064 hypothetical protein; Provisional
Probab=98.55 E-value=2.1e-07 Score=112.25 Aligned_cols=111 Identities=15% Similarity=0.119 Sum_probs=85.0
Q ss_pred CCcccccceeehHHHHhHHhcCCCCCCCcEEEEEeCccccCCccHHHHHHHhc--CCCCCCcccEEEEEEcCC-cccccC
Q 001713 364 SHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS--ALPNYSIGGTIHIVVNNQ-VAFTTD 440 (1021)
Q Consensus 364 Shlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDgA~sGqG~v~EalnlA--~LP~y~~GGvI~Vv~NNq-~g~tT~ 440 (1021)
+.+|..+|.|+|+++|... .-+|++.|||+|. -...|-...+ +|| +++||.||+ ||+-..
T Consensus 405 g~mG~~lpaAiGa~lA~p~---------~~vv~i~GDGsf~--m~~~eL~Ta~~~~lp------v~ivV~NN~~yg~~~~ 467 (544)
T PRK07064 405 GGIGQGLAMAIGAALAGPG---------RKTVGLVGDGGLM--LNLGELATAVQENAN------MVIVLMNDGGYGVIRN 467 (544)
T ss_pred CccccccchhhhhhhhCcC---------CcEEEEEcchHhh--hhHHHHHHHHHhCCC------eEEEEEeCChhHHHHH
Confidence 5699999999999999642 4689999999995 5666666655 999 777777777 775321
Q ss_pred ---------CC-CCcccccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeee
Q 001713 441 ---------PM-SGRSSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCY 497 (1021)
Q Consensus 441 ---------~~-~~rs~~~~sd~Aka~g~p~~~VdG~D~eAV~~a~~~A~e~rr~~~gPvlIe~vtY 497 (1021)
.. ......++..+|++||++.++|+ +++++..+++.|++ .++|+|||+.++
T Consensus 468 ~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~~----~~~p~lIeV~~~ 528 (544)
T PRK07064 468 IQDAQYGGRRYYVELHTPDFALLAASLGLPHWRVT--SADDFEAVLREALA----KEGPVLVEVDML 528 (544)
T ss_pred HHHHhcCCccccccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHc----CCCCEEEEEEcc
Confidence 00 01124678899999999999996 68888888887763 578999999986
No 104
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=98.54 E-value=9.2e-08 Score=116.55 Aligned_cols=114 Identities=24% Similarity=0.268 Sum_probs=86.9
Q ss_pred CCcccccceeehHHHHhHHhcCCCCCCCcEEEEEeCccccCCccHHHHHHHhc--CCCCCCcccEEEEEEcCC-cccccC
Q 001713 364 SHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS--ALPNYSIGGTIHIVVNNQ-VAFTTD 440 (1021)
Q Consensus 364 Shlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDgA~sGqG~v~EalnlA--~LP~y~~GGvI~Vv~NNq-~g~tT~ 440 (1021)
+.+|..+|.|+|+++|..+ .-+|++.|||+|. -.+.|-...+ +|| +++||.||. ||+-..
T Consensus 418 gsmG~glpaaiGa~lA~pd---------r~Vv~i~GDG~f~--m~~~EL~Ta~r~~lp------vv~iV~NN~~yg~i~~ 480 (588)
T TIGR01504 418 GPLGWTIPAALGVCAADPK---------RNVVALSGDYDFQ--FMIEELAVGAQHNIP------YIHVLVNNAYLGLIRQ 480 (588)
T ss_pred ccccchHhHHHhhhhhCCC---------CcEEEEEcchHhh--ccHHHHHHHHHhCCC------eEEEEEeCCchHHHHH
Confidence 5699999999999999753 4589999999995 5556665555 999 888887777 775321
Q ss_pred C-----CC-------C--c------ccccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEee
Q 001713 441 P-----MS-------G--R------SSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVC 496 (1021)
Q Consensus 441 ~-----~~-------~--r------s~~~~sd~Aka~g~p~~~VdG~D~eAV~~a~~~A~e~rr~~~gPvlIe~vt 496 (1021)
. .. . . ...++..+|++||+.+.+|+ +++++..+.+.|++-..+.++|+|||+.+
T Consensus 481 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~V~--~~~eL~~al~~a~~~~~~~~~p~lIeV~i 554 (588)
T TIGR01504 481 AQRAFDMDYCVQLAFENINSSEVNGYGVDHVKVAEGLGCKAIRVF--KPEEIAPAFEQAKALMAEHRVPVVVEVIL 554 (588)
T ss_pred HHHHhcccccceeeccccccccccCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHhhcccCCCcEEEEEEe
Confidence 0 00 0 0 13578899999999999995 78999888888886544458999999998
No 105
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=98.54 E-value=2.1e-07 Score=113.00 Aligned_cols=111 Identities=22% Similarity=0.280 Sum_probs=84.7
Q ss_pred CCcccccceeehHHHHhHHhcCCCCCCCcEEEEEeCccccCCccHHHHHHHhc--CCCCCCcccEEEEEEcCC-cccccC
Q 001713 364 SHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS--ALPNYSIGGTIHIVVNNQ-VAFTTD 440 (1021)
Q Consensus 364 Shlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDgA~sGqG~v~EalnlA--~LP~y~~GGvI~Vv~NNq-~g~tT~ 440 (1021)
+.+|..+|.|+|+++|... .-+|++.|||+|. -.+.|-...+ +|| +++||.||+ ||+...
T Consensus 408 G~mG~~lpaAiGa~la~p~---------r~vv~i~GDGsf~--m~~~eL~Ta~~~~lp------v~ivV~NN~~~g~i~~ 470 (574)
T PRK09124 408 GSMANAMPQALGAQAAHPG---------RQVVALSGDGGFS--MLMGDFLSLVQLKLP------VKIVVFNNSVLGFVAM 470 (574)
T ss_pred ccccchHHHHHHHHHhCCC---------CeEEEEecCcHHh--ccHHHHHHHHHhCCC------eEEEEEeCCccccHHH
Confidence 5589999999999998642 4589999999994 6677766656 999 777777777 776410
Q ss_pred ------C-CCC--cccccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeee
Q 001713 441 ------P-MSG--RSSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCY 497 (1021)
Q Consensus 441 ------~-~~~--rs~~~~sd~Aka~g~p~~~VdG~D~eAV~~a~~~A~e~rr~~~gPvlIe~vtY 497 (1021)
. ... ....+++.+|++||+++++|+ +++++..+.+.|++ .++|+|||+.+=
T Consensus 471 ~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~~----~~~p~lIev~i~ 530 (574)
T PRK09124 471 EMKAGGYLTDGTDLHNPDFAAIAEACGITGIRVE--KASELDGALQRAFA----HDGPALVDVVTA 530 (574)
T ss_pred HHHhcCCccccCcCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEec
Confidence 0 000 123578899999999999996 68888888887763 478999999873
No 106
>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase. This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A
Probab=98.52 E-value=4.3e-07 Score=104.34 Aligned_cols=113 Identities=15% Similarity=0.192 Sum_probs=82.2
Q ss_pred CCcccccceeehHHHHhHHhcCCCCCCCcEEEEEeCccccCCccHHHHHHHhc--CCCCCCcccEEEEEEcCC-cccccC
Q 001713 364 SHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS--ALPNYSIGGTIHIVVNNQ-VAFTTD 440 (1021)
Q Consensus 364 Shlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDgA~sGqG~v~EalnlA--~LP~y~~GGvI~Vv~NNq-~g~tT~ 440 (1021)
+.+|...|.|+|+++|.+. .-+||+.|||+|. ....|-...+ ++++ ++|||.||+ |+.+..
T Consensus 221 GsMG~a~p~AlG~ala~p~---------r~Vv~i~GDGsfl--m~~~eL~t~~~~~~~n-----li~VVlNNg~~~~~g~ 284 (361)
T TIGR03297 221 GSMGHASQIALGLALARPD---------QRVVCLDGDGAAL--MHMGGLATIGTQGPAN-----LIHVLFNNGAHDSVGG 284 (361)
T ss_pred chhhhHHHHHHHHHHHCCC---------CCEEEEEChHHHH--HHHHHHHHHHHhCCCC-----eEEEEEcCccccccCC
Confidence 5699999999999998653 4599999999994 4444444444 6533 899999998 454332
Q ss_pred CCCCcccccHHHHHhhcCcc-EEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeeec
Q 001713 441 PMSGRSSQYCTDVAKALDAP-IFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYR 498 (1021)
Q Consensus 441 ~~~~rs~~~~sd~Aka~g~p-~~~VdG~D~eAV~~a~~~A~e~rr~~~gPvlIe~vtYR 498 (1021)
........++..+|+++|+. +++| ++++++..+.+.|. +.++|+|||+.+-.
T Consensus 285 q~~~~~~~d~~~iA~a~G~~~~~~v--~~~~eL~~al~~a~----~~~gp~lIeV~v~~ 337 (361)
T TIGR03297 285 QPTVSQHLDFAQIAKACGYAKVYEV--STLEELETALTAAS----SANGPRLIEVKVRP 337 (361)
T ss_pred cCCCCCCCCHHHHHHHCCCceEEEe--CCHHHHHHHHHHHH----hCCCcEEEEEEecC
Confidence 11111346889999999974 5655 58899988888875 34789999999844
No 107
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=98.52 E-value=2.6e-07 Score=112.06 Aligned_cols=111 Identities=14% Similarity=0.136 Sum_probs=86.0
Q ss_pred CCcccccceeehHHHHhHHhcCCCCCCCcEEEEEeCccccCCccHHHHHHHhc--CCCCCCcccEEEEEEcCC-cccccC
Q 001713 364 SHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS--ALPNYSIGGTIHIVVNNQ-VAFTTD 440 (1021)
Q Consensus 364 Shlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDgA~sGqG~v~EalnlA--~LP~y~~GGvI~Vv~NNq-~g~tT~ 440 (1021)
+.+|.++|.|+|+++|... ..+|++.|||+|. -.++|-.+.+ +|| +|+||.||+ ||+...
T Consensus 419 g~mG~~lpaaiGa~la~~~---------~~vv~i~GDGsf~--~~~~eL~ta~~~~lp------vi~vV~NN~~~g~~~~ 481 (564)
T PRK08155 419 GTMGFGLPAAIGAALANPE---------RKVLCFSGDGSLM--MNIQEMATAAENQLD------VKIILMNNEALGLVHQ 481 (564)
T ss_pred ccccchhHHHHHHHHhCCC---------CcEEEEEccchhh--ccHHHHHHHHHhCCC------eEEEEEeCCcccccHH
Confidence 5699999999999999642 4689999999996 5678866655 999 999999998 776431
Q ss_pred C------C-----CCcccccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeee
Q 001713 441 P------M-----SGRSSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCY 497 (1021)
Q Consensus 441 ~------~-----~~rs~~~~sd~Aka~g~p~~~VdG~D~eAV~~a~~~A~e~rr~~~gPvlIe~vtY 497 (1021)
. . ......++..+|++||++++.|+ +++++..+.+.|++ .++|+|||+.+=
T Consensus 482 ~q~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~lIeV~~~ 543 (564)
T PRK08155 482 QQSLFYGQRVFAATYPGKINFMQIAAGFGLETCDLN--NEADPQAALQEAIN----RPGPALIHVRID 543 (564)
T ss_pred HHHHhcCCCeeeccCCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEeC
Confidence 0 0 00123578899999999999988 57888777777763 578999999983
No 108
>PRK11869 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=98.52 E-value=2.8e-07 Score=102.29 Aligned_cols=110 Identities=18% Similarity=0.101 Sum_probs=85.6
Q ss_pred cccccceeehHHHHhHHhcCCCCCCCcEEEEEeCccccCCccH-HHHHHHhc--CCCCCCcccEEEEEEcCC-ccccc--
Q 001713 366 LEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGV-VYETLHLS--ALPNYSIGGTIHIVVNNQ-VAFTT-- 439 (1021)
Q Consensus 366 lg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDgA~sGqG~-v~EalnlA--~LP~y~~GGvI~Vv~NNq-~g~tT-- 439 (1021)
+|..+|.|+|+.+|... .-+|++.|||++. ++ +.|-.+.+ ++| +++||.||+ ||++.
T Consensus 62 mG~alp~AiGaklA~pd---------~~VVai~GDG~~~--~iG~~eL~tA~r~nl~------i~~IV~NN~~Yg~t~~Q 124 (280)
T PRK11869 62 HGRAIPAATAVKATNPE---------LTVIAEGGDGDMY--AEGGNHLIHAIRRNPD------ITVLVHNNQVYGLTKGQ 124 (280)
T ss_pred cccHHHHHHHHHHHCCC---------CcEEEEECchHHh--hCcHHHHHHHHHhCcC------cEEEEEECHHHhhhcce
Confidence 79999999999888542 4589999999974 55 77777777 999 999999998 67653
Q ss_pred -----CC---------CCCcccccHHHHHhhcCccEEEE-eCCCHHHHHHHHHHHHHHHHccCCCEEEEEee
Q 001713 440 -----DP---------MSGRSSQYCTDVAKALDAPIFHV-NGDDMEAVAHVCELAAEWRQTFHSDVVVDLVC 496 (1021)
Q Consensus 440 -----~~---------~~~rs~~~~sd~Aka~g~p~~~V-dG~D~eAV~~a~~~A~e~rr~~~gPvlIe~vt 496 (1021)
+. .......++..+|+++|++.+.. +-.+++++..++++|++ .+||+|||+.+
T Consensus 125 ~s~~t~~g~~~~~~p~g~~~~~~D~~~lA~a~G~~~va~~~~~~~~~l~~~i~~Al~----~~Gp~lIeV~~ 192 (280)
T PRK11869 125 ASPTTLKGFKTPTQPWGVFEEPFNPIALAIALDASFVARTFSGDIEETKEILKEAIK----HKGLAIVDIFQ 192 (280)
T ss_pred ecCCCCCCcccccCCCCccCCCCCHHHHHHHCCCCEEEEeCCCCHHHHHHHHHHHHh----CCCCEEEEEEC
Confidence 10 00011247888999999997774 36699999999999884 58899999974
No 109
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=98.51 E-value=2.6e-07 Score=112.30 Aligned_cols=111 Identities=21% Similarity=0.244 Sum_probs=81.9
Q ss_pred CCcccccceeehHHHHhHHhcCCCCCCCcEEEEEeCccccCCccHHHHHHHhc--CCCCCCcccEEEEEEcCC-cccccC
Q 001713 364 SHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS--ALPNYSIGGTIHIVVNNQ-VAFTTD 440 (1021)
Q Consensus 364 Shlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDgA~sGqG~v~EalnlA--~LP~y~~GGvI~Vv~NNq-~g~tT~ 440 (1021)
+.+|.++|.|+|+++|... .-+||+.|||+|. -...|-...+ +|| +++||.||+ ||+...
T Consensus 437 gsmG~~l~~aiGa~la~~~---------~~vv~i~GDGsf~--~~~~el~ta~~~~l~------~~~vv~NN~~~g~~~~ 499 (578)
T PRK06112 437 AGLGWGVPMAIGAKVARPG---------APVICLVGDGGFA--HVWAELETARRMGVP------VTIVVLNNGILGFQKH 499 (578)
T ss_pred cccccHHHHHHHHHhhCCC---------CcEEEEEcchHHH--hHHHHHHHHHHhCCC------eEEEEEeCCccCCEEe
Confidence 4589999999999988542 4699999999994 4445544433 999 999999998 354321
Q ss_pred CCC----C------cccccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeee
Q 001713 441 PMS----G------RSSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCY 497 (1021)
Q Consensus 441 ~~~----~------rs~~~~sd~Aka~g~p~~~VdG~D~eAV~~a~~~A~e~rr~~~gPvlIe~vtY 497 (1021)
... . ....++..+|++||++++.|+ +++++..+.+.|. +.++|+|||+.+-
T Consensus 500 ~~~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~~v~--~~~el~~al~~a~----~~~gp~lIev~~~ 560 (578)
T PRK06112 500 AETVKFGTHTDACHFAAVDHAAIARACGCDGVRVE--DPAELAQALAAAM----AAPGPTLIEVITD 560 (578)
T ss_pred ccccccCCccccCcCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHH----hCCCCEEEEEEcC
Confidence 100 0 023568899999999999997 5777776666665 4689999999983
No 110
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=98.50 E-value=2.7e-07 Score=112.27 Aligned_cols=114 Identities=20% Similarity=0.233 Sum_probs=86.2
Q ss_pred CCcccccceeehHHHHhHHhcCCCCCCCcEEEEEeCccccCCccHHHHHHHhc--CCCCCCcccEEEEEEcCC-cccccC
Q 001713 364 SHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS--ALPNYSIGGTIHIVVNNQ-VAFTTD 440 (1021)
Q Consensus 364 Shlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDgA~sGqG~v~EalnlA--~LP~y~~GGvI~Vv~NNq-~g~tT~ 440 (1021)
+.+|..+|.|+|+++|... .-+|++.|||+|. -.+.|-.... +|| +|+||.||+ ||+...
T Consensus 430 g~mG~~lpaaiGa~la~p~---------~~Vv~i~GDG~f~--m~~~eL~Tavr~~lp------vi~vV~NN~~yg~i~~ 492 (579)
T TIGR03457 430 GNCGYAFPTIIGAKIAAPD---------RPVVAYAGDGAWG--MSMNEIMTAVRHDIP------VTAVVFRNRQWGAEKK 492 (579)
T ss_pred ccccchHHHHHhhhhhCCC---------CcEEEEEcchHHh--ccHHHHHHHHHhCCC------eEEEEEECcchHHHHH
Confidence 5699999999999998642 4589999999996 4556665555 999 777777776 775320
Q ss_pred -------C--CC-Cc-ccccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeee
Q 001713 441 -------P--MS-GR-SSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCY 497 (1021)
Q Consensus 441 -------~--~~-~r-s~~~~sd~Aka~g~p~~~VdG~D~eAV~~a~~~A~e~rr~~~gPvlIe~vtY 497 (1021)
. .. .. ...++..+|++||+++++|+ +++++..+.+.|++.. +.++|+|||+.+-
T Consensus 493 ~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~g~~v~--~~~el~~al~~a~~~~-~~~~p~lieV~v~ 557 (579)
T TIGR03457 493 NQVDFYNNRFVGTELESELSFAGIADAMGAKGVVVD--KPEDVGPALKKAIAAQ-AEGKTTVIEIVCT 557 (579)
T ss_pred HHHHhhCCcceeccCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhhC-CCCCcEEEEEEeC
Confidence 0 00 01 12478999999999999985 7899999999998643 3478999999984
No 111
>PRK05858 hypothetical protein; Provisional
Probab=98.50 E-value=1.9e-07 Score=112.75 Aligned_cols=110 Identities=19% Similarity=0.192 Sum_probs=85.8
Q ss_pred CCcccccceeehHHHHhHHhcCCCCCCCcEEEEEeCccccCCccHHHHHHHhc--CCCCCCcccEEEEEEcCC-cccccC
Q 001713 364 SHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS--ALPNYSIGGTIHIVVNNQ-VAFTTD 440 (1021)
Q Consensus 364 Shlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDgA~sGqG~v~EalnlA--~LP~y~~GGvI~Vv~NNq-~g~tT~ 440 (1021)
+.+|..+|.|+|+++|... +-+|++.|||+|. -.++|-...+ +|| +++||.||+ ||+.-.
T Consensus 407 gsmG~~lp~aiGa~la~p~---------r~vv~i~GDG~f~--~~~~eL~Ta~~~~lp------i~ivV~NN~~y~~~~~ 469 (542)
T PRK05858 407 GCLGTGPGYALAARLARPS---------RQVVLLQGDGAFG--FSLMDVDTLVRHNLP------VVSVIGNNGIWGLEKH 469 (542)
T ss_pred cccccchhHHHHHHHhCCC---------CcEEEEEcCchhc--CcHHHHHHHHHcCCC------EEEEEEeCCchhhHHH
Confidence 4589999999999998642 4699999999994 6677777777 999 888888886 665321
Q ss_pred ---------CC-CCcccccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEee
Q 001713 441 ---------PM-SGRSSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVC 496 (1021)
Q Consensus 441 ---------~~-~~rs~~~~sd~Aka~g~p~~~VdG~D~eAV~~a~~~A~e~rr~~~gPvlIe~vt 496 (1021)
.. +.....++..+|++||+++.+|+ +++++..+.++|++ .++|+|||+.+
T Consensus 470 ~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~~----~~~p~lIev~~ 529 (542)
T PRK05858 470 PMEALYGYDVAADLRPGTRYDEVVRALGGHGELVT--VPAELGPALERAFA----SGVPYLVNVLT 529 (542)
T ss_pred HHHHhcCCccccccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCcEEEEEEE
Confidence 00 01134678899999999999998 67888888888874 57899999998
No 112
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=98.50 E-value=3.4e-07 Score=110.33 Aligned_cols=112 Identities=21% Similarity=0.189 Sum_probs=85.3
Q ss_pred CCcccccceeehHHHHhHHhcCCCCCCCcEEEEEeCccccCCccHHHHHHHhc--CCCCCCcccEEEEEEcCC-cccccC
Q 001713 364 SHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS--ALPNYSIGGTIHIVVNNQ-VAFTTD 440 (1021)
Q Consensus 364 Shlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDgA~sGqG~v~EalnlA--~LP~y~~GGvI~Vv~NNq-~g~tT~ 440 (1021)
+.+|..+|.|+|+++|... .-+|++.|||+|. ..+.|-...+ +|| +++||.||. ||+-..
T Consensus 408 g~mG~~lpaaiGa~la~~~---------~~vv~i~GDGsf~--m~~~eL~Ta~~~~lp------i~ivV~NN~~y~~~~~ 470 (539)
T TIGR02418 408 QTLGVALPWAIGAALVRPN---------TKVVSVSGDGGFL--FSSMELETAVRLKLN------IVHIIWNDNGYNMVEF 470 (539)
T ss_pred cccccHHHHHHHHHHhCCC---------CcEEEEEcchhhh--chHHHHHHHHHhCCC------eEEEEEECCcchHHHH
Confidence 5699999999999998653 4599999999994 7777766666 999 788877776 664310
Q ss_pred -----CCC----CcccccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeeec
Q 001713 441 -----PMS----GRSSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYR 498 (1021)
Q Consensus 441 -----~~~----~rs~~~~sd~Aka~g~p~~~VdG~D~eAV~~a~~~A~e~rr~~~gPvlIe~vtYR 498 (1021)
... .....++..+|++||+++++|+ +++++..+.++|.+ .++|+|||+.+-+
T Consensus 471 ~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~V~--~~~eL~~al~~a~~----~~~p~lIev~v~~ 531 (539)
T TIGR02418 471 QEEMKYQRSSGVDFGPIDFVKYAESFGAKGLRVE--SPDQLEPTLRQAME----VEGPVVVDIPVDY 531 (539)
T ss_pred HHHHhcCCcccccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEecC
Confidence 000 0124678899999999999987 57888877777763 5789999999843
No 113
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=98.48 E-value=3.2e-07 Score=112.00 Aligned_cols=112 Identities=16% Similarity=0.156 Sum_probs=86.5
Q ss_pred CCcccccceeehHHHHhHHhcCCCCCCCcEEEEEeCccccCCccHHHHHHHhc--CCCCCCcccEEEEEEcCC-ccccc-
Q 001713 364 SHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS--ALPNYSIGGTIHIVVNNQ-VAFTT- 439 (1021)
Q Consensus 364 Shlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDgA~sGqG~v~EalnlA--~LP~y~~GGvI~Vv~NNq-~g~tT- 439 (1021)
+.+|..+|.|+|+++|... .-+|++.|||+|. -.+.|-...+ +|| +++||.||+ ||+-.
T Consensus 430 gsmG~glpaaiGa~lA~p~---------r~Vv~i~GDG~f~--m~~~EL~Ta~r~~lp------vi~vV~NN~~y~~i~~ 492 (595)
T PRK09107 430 GTMGYGLPAALGVQIAHPD---------ALVIDIAGDASIQ--MCIQEMSTAVQYNLP------VKIFILNNQYMGMVRQ 492 (595)
T ss_pred hhhhhhHHHHHHHHHhCCC---------CeEEEEEcCchhh--ccHHHHHHHHHhCCC------eEEEEEeCCccHHHHH
Confidence 6699999999999999653 4699999999995 6666655555 999 899888888 66521
Q ss_pred --------CCCCC--cccccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeeec
Q 001713 440 --------DPMSG--RSSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYR 498 (1021)
Q Consensus 440 --------~~~~~--rs~~~~sd~Aka~g~p~~~VdG~D~eAV~~a~~~A~e~rr~~~gPvlIe~vtYR 498 (1021)
..... ...+++..+|++||+++++|+ +++++..+.+.|.+ .++|+|||+.+-+
T Consensus 493 ~q~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~lIeV~i~~ 555 (595)
T PRK09107 493 WQQLLHGNRLSHSYTEAMPDFVKLAEAYGAVGIRCE--KPGDLDDAIQEMID----VDKPVIFDCRVAN 555 (595)
T ss_pred HHHHHhCCccccccCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEecC
Confidence 00111 123678999999999999995 78888888887774 4789999999854
No 114
>TIGR03710 OAFO_sf 2-oxoacid:acceptor oxidoreductase, alpha subunit. The genes for this enzyme in Prevotella intermedia 17, Persephonella marina EX-H1 and Picrophilus torridus DSM 9790 are in close proximity to a variety of TCA cycle genes. Persephonella marina and P. torridus are believed to encode complete TCA cycles, and none of these contains the lipoate-based 2-oxoglutarate dehydrogenase (E1/E2/E3) system. That system is presumed to be replaced by this one. In fact, the lipoate system is absent in most organisms possessing a member of this family, providing additional circumstantial evidence that many of these enzymes are capable of acting as 2-oxoglutarate dehydrogenases and supporting flux through TCA cycles in either the forward or reverse directions.
Probab=98.48 E-value=3.9e-06 Score=101.88 Aligned_cols=221 Identities=15% Similarity=0.241 Sum_probs=136.4
Q ss_pred cchHHHHHHHHhhccCCCCcceEehhhhhhhHhhHHHHHHHHHhhhhhhhcCccceEEEeCc-cCCCCC-cCCcCchhhH
Q 001713 706 LSEFGVLGFELGYSMENPNSLVMWEAQFGDFANGAQVIFDQFVNSGESKWLRQSGLVVMLPH-GYDGQG-PEHSSARLER 783 (1021)
Q Consensus 706 LSE~~vlGfe~G~a~~g~~~lviwEaqFgDF~n~Aq~~iDqfi~s~~~kw~~~~~lV~~lPh-G~~G~G-peHSs~r~Er 783 (1021)
=||-+.++.++|+|++|-|.++ +.=|-=++.+ .+.+--. . +...|+||.+-. +.-..| |.++.. -..
T Consensus 244 E~E~aA~~~a~GAs~aG~Ra~t---aTSg~Gl~lm---~E~l~~a--~--~~~~P~Vi~~~~R~gpstg~~t~~eq-~D~ 312 (562)
T TIGR03710 244 EDEIAAINMAIGASYAGARAMT---ATSGPGFALM---TEALGLA--G--MTETPLVIVDVQRGGPSTGLPTKTEQ-SDL 312 (562)
T ss_pred ccHHHHHHHHHhHHhcCCceee---cCCCCChhHh---HHHHhHH--H--hccCCEEEEEcccCCCCCCCCCCccH-HHH
Confidence 3899999999999999999999 6655544444 3443211 1 135699998753 432222 333332 222
Q ss_pred hhhccCCCCCcccCCCchhhhcccccCeEEEecCCHHHHHHHHHHHHh--cCCCCcEEEEeeccccCCccccCCc--ccc
Q 001713 784 FLQMSDDNPYVIPEMDSTLRTQIQECNWQIVNVTTPANYFHVLRRQIH--REFRKPLVVMSPKNLLRHKECKSNL--SEF 859 (1021)
Q Consensus 784 ~Lql~~e~~~~~~~ipg~~~~~~~~~Nl~Vv~pstpad~fhlLrrqi~--~~~~kPliv~~pK~Llr~~~~~s~~--~e~ 859 (1021)
++.+-. .|-+..|.|+.|+|+.+.|.+...+.. ..++-|||++..+.|..+...+... ++.
T Consensus 313 ~~~~~~---------------~hgd~~~ivl~p~~~qEa~d~~~~Af~lAe~~~~PViv~~D~~l~~~~~~v~~~~~~~~ 377 (562)
T TIGR03710 313 LFALYG---------------GHGEFPRIVLAPGSPEECFYLAIEAFNLAEKYQTPVIVLSDQYLANSYETVPPPDLDDL 377 (562)
T ss_pred HHHhcC---------------CCCCcCceEEcCCCHHHHHHHHHHHHHHHHHhcCCEEEEechHHhCCceeccCCChhhc
Confidence 322111 123456999999999999999998864 4689999999999986443322111 111
Q ss_pred ccc------CCCCCC-------------CCCCC---cceE----------e----------e-------cC----ccc-c
Q 001713 860 DDV------QGHPGF-------------DKQGT---RFKR----------L----------I-------KD----QNE-H 885 (1021)
Q Consensus 860 ~~~------~~~~~~-------------~~~~~---~f~~----------v----------i-------~~----~~~-~ 885 (1021)
... +..|.+ ..|+. .|.. + + .+ ... .
T Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~~~~~~~~~~~e~g~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~e 457 (562)
T TIGR03710 378 PIIDRGKVLEPEEEYKRYELTEDGISPRAIPGTPGGIHRATGDEHDETGHISEDPENRVKMMEKRARKLETIAKEIPEPE 457 (562)
T ss_pred ccccccccccCCCCCCCCCcCCCCCCCCCcCCCCCceEEecCCccCCCCCcCCCHHHHHHHHHHHHHHHHHHHhhCCCce
Confidence 100 000000 01110 0000 0 0 00 000 0
Q ss_pred ccCCCCCeEEEEeechhHHHHHHHHHHc--CCCcEEEEEecccCCCCHHHHHHHHHcCCCceEEEEecCCcc
Q 001713 886 SDLEEGIRRLILCSGKVYYELYEERKKH--SASDIAICRVEQLCPFPYDLVQRELKRYPNAEVVWSQEEPMN 955 (1021)
Q Consensus 886 ~~~~~g~~~~Iv~~Gk~~~~l~~a~~~~--~~~~v~ii~le~L~Pfp~~~i~~~l~k~~~~~~vwvqEe~~n 955 (1021)
....+..+++|||||.++..+.++.+.+ ++.+|.++++++++|||.+.|.+.+++..++ +++ |+..+
T Consensus 458 ~~~~~da~~~iv~~Gs~~~~~~eav~~lr~~G~kvg~l~~~~~~PfP~~~i~~~l~~~k~v--~Vv-E~n~~ 526 (562)
T TIGR03710 458 VYGDEDADVLVIGWGSTYGAIREAVERLRAEGIKVALLHLRLLYPFPKDELAELLEGAKKV--IVV-EQNAT 526 (562)
T ss_pred eecCCCCCEEEEEeCCCHHHHHHHHHHHHhcCCeEEEEEeCeecCCCHHHHHHHHhcCCEE--EEE-ccChh
Confidence 0012346799999999999999998876 4688999999999999999999999988766 666 44444
No 115
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=98.48 E-value=4.6e-07 Score=109.59 Aligned_cols=112 Identities=18% Similarity=0.226 Sum_probs=84.6
Q ss_pred CCcccccceeehHHHHhHHhcCCCCCCCcEEEEEeCccccCCccHHHHHHHhc--CCCCCCcccEEEEEEcCC-cccccC
Q 001713 364 SHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS--ALPNYSIGGTIHIVVNNQ-VAFTTD 440 (1021)
Q Consensus 364 Shlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDgA~sGqG~v~EalnlA--~LP~y~~GGvI~Vv~NNq-~g~tT~ 440 (1021)
+.+|.++|.|+|+++|... + .-+|++.|||+|. -...|-...+ +|| +++||.||+ ||+-..
T Consensus 396 g~mG~glpaaiGa~la~p~---~-----~~Vv~i~GDGsf~--~~~~eL~Ta~~~~lp------i~ivV~NN~~~g~i~~ 459 (549)
T PRK06457 396 GSMGIGVPGSVGASFAVEN---K-----RQVISFVGDGGFT--MTMMELITAKKYDLP------VKIIIYNNSKLGMIKF 459 (549)
T ss_pred chhhhhHHHHHHHHhcCCC---C-----CeEEEEEcccHHh--hhHHHHHHHHHHCCC------eEEEEEECCccchHHH
Confidence 5699999999999998630 1 4589999999995 6666666555 999 888887777 664310
Q ss_pred -------CCC--CcccccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeee
Q 001713 441 -------PMS--GRSSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCY 497 (1021)
Q Consensus 441 -------~~~--~rs~~~~sd~Aka~g~p~~~VdG~D~eAV~~a~~~A~e~rr~~~gPvlIe~vtY 497 (1021)
... .....++..+|++||+++++|+ +++++..+.+.|+ +.++|+|||+.+-
T Consensus 460 ~q~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~----~~~~p~lIeV~i~ 519 (549)
T PRK06457 460 EQEVMGYPEWGVDLYNPDFTKIAESIGFKGFRLE--EPKEAEEIIEEFL----NTKGPAVLDAIVD 519 (549)
T ss_pred HHHHhcCCcccccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHH----hCCCCEEEEEEeC
Confidence 000 1123578899999999999997 7888888888776 3578999999984
No 116
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=98.48 E-value=4.4e-07 Score=109.90 Aligned_cols=112 Identities=21% Similarity=0.111 Sum_probs=82.8
Q ss_pred CCcccccceeehHHHHhHHhcCCCCCCCcEEEEEeCccccCCccHHHHHHHhc--CCCCCCcccEEEEEEcCC-cccccC
Q 001713 364 SHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS--ALPNYSIGGTIHIVVNNQ-VAFTTD 440 (1021)
Q Consensus 364 Shlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDgA~sGqG~v~EalnlA--~LP~y~~GGvI~Vv~NNq-~g~tT~ 440 (1021)
+.+|.++|.|+|+++|... ..+||+.|||+|. -...|-...+ +|| +++||.||+ ||+...
T Consensus 415 g~mG~glpaaiGa~la~p~---------~~vv~i~GDGsf~--~~~~el~ta~~~~l~------i~~vv~nN~~~~~~~~ 477 (557)
T PRK08199 415 GSMGYGLPAAIAAKLLFPE---------RTVVAFAGDGCFL--MNGQELATAVQYGLP------IIVIVVNNGMYGTIRM 477 (557)
T ss_pred ccccchHHHHHHHHHhCCC---------CcEEEEEcchHhh--ccHHHHHHHHHhCCC------eEEEEEeCCcchHHHH
Confidence 5689999999999888542 5689999999985 3444544444 999 999999998 675321
Q ss_pred C------C----CCcccccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeeec
Q 001713 441 P------M----SGRSSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYR 498 (1021)
Q Consensus 441 ~------~----~~rs~~~~sd~Aka~g~p~~~VdG~D~eAV~~a~~~A~e~rr~~~gPvlIe~vtYR 498 (1021)
. . ......++.++|++||+++++|+ +++++..+.+.|+ +.++|+|||+.+-+
T Consensus 478 ~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~----~~~gp~li~v~~~~ 539 (557)
T PRK08199 478 HQEREYPGRVSGTDLTNPDFAALARAYGGHGETVE--RTEDFAPAFERAL----ASGKPALIEIRIDP 539 (557)
T ss_pred HHHHhcCCccccccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHH----hCCCCEEEEEEeCH
Confidence 0 0 00123578999999999999998 5777777776665 45889999999843
No 117
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=98.47 E-value=3.8e-07 Score=110.79 Aligned_cols=112 Identities=20% Similarity=0.211 Sum_probs=82.9
Q ss_pred CCcccccceeehHHHHhHHhcCCCCCCCcEEEEEeCccccCCccHHHHHHHhc--CCCCCCcccEEEEEEcCC-ccccc-
Q 001713 364 SHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS--ALPNYSIGGTIHIVVNNQ-VAFTT- 439 (1021)
Q Consensus 364 Shlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDgA~sGqG~v~EalnlA--~LP~y~~GGvI~Vv~NNq-~g~tT- 439 (1021)
+.+|.++|.|+|+++|... .-+|++.|||+|. ..++|-...+ +|| +++||.||+ ||+-.
T Consensus 424 g~mG~glpaAiGaala~p~---------~~vv~i~GDGsf~--m~~~eL~ta~r~~lp------i~ivV~NN~~~~~i~~ 486 (571)
T PRK07710 424 GTMGFGLPAAIGAQLAKPD---------ETVVAIVGDGGFQ--MTLQELSVIKELSLP------VKVVILNNEALGMVRQ 486 (571)
T ss_pred ccccchHHHHHHHHHhCCC---------CcEEEEEcchHHh--hhHHHHHHHHHhCCC------eEEEEEECchHHHHHH
Confidence 6789999999999999642 4689999999995 6777733333 999 888888877 66421
Q ss_pred --------CC--CCCcccccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeeec
Q 001713 440 --------DP--MSGRSSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYR 498 (1021)
Q Consensus 440 --------~~--~~~rs~~~~sd~Aka~g~p~~~VdG~D~eAV~~a~~~A~e~rr~~~gPvlIe~vtYR 498 (1021)
.. .......++..+|++||+++++|+. ++++..+.+.|. +.++|+|||+.+-+
T Consensus 487 ~~~~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~~v~~--~~el~~al~~a~----~~~~p~lieV~vd~ 549 (571)
T PRK07710 487 WQEEFYNQRYSHSLLSCQPDFVKLAEAYGIKGVRIDD--ELEAKEQLQHAI----ELQEPVVIDCRVLQ 549 (571)
T ss_pred HHHHHhCCcceeccCCCCCCHHHHHHHCCCeEEEECC--HHHHHHHHHHHH----hCCCCEEEEEEecC
Confidence 00 0111236788999999999999974 677766666555 46899999999864
No 118
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=98.47 E-value=4.3e-07 Score=110.27 Aligned_cols=113 Identities=18% Similarity=0.148 Sum_probs=84.0
Q ss_pred CCcccccceeehHHHHhHHhcCCCCCCCcEEEEEeCccccCCccHHHHHHHhc--CCCCCCcccEEEEEEcCC-ccccc-
Q 001713 364 SHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS--ALPNYSIGGTIHIVVNNQ-VAFTT- 439 (1021)
Q Consensus 364 Shlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDgA~sGqG~v~EalnlA--~LP~y~~GGvI~Vv~NNq-~g~tT- 439 (1021)
+.+|.++|.|+|+++|... ..+|++.|||+|. -.+.|-...+ +|| +++||.||+ |++-.
T Consensus 421 g~mG~~lp~aiGa~la~p~---------~~vv~i~GDG~f~--~~~~eL~ta~~~~lp------v~~vV~NN~~~~~i~~ 483 (574)
T PRK06882 421 GTMGFGLPAAIGVKFAHPE---------ATVVCVTGDGSIQ--MNIQELSTAKQYDIP------VVIVSLNNRFLGMVKQ 483 (574)
T ss_pred ccccchhHHHHHHHhhcCC---------CcEEEEEcchhhh--ccHHHHHHHHHhCCC------eEEEEEECchhHHHHH
Confidence 5699999999999998642 4589999999996 3455555554 999 899999998 45321
Q ss_pred --------CCC--CCcccccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeeec
Q 001713 440 --------DPM--SGRSSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYR 498 (1021)
Q Consensus 440 --------~~~--~~rs~~~~sd~Aka~g~p~~~VdG~D~eAV~~a~~~A~e~rr~~~gPvlIe~vtYR 498 (1021)
... ......++..+|++||+++++|+ +++++..+.+.|++. .++|+|||+.+-+
T Consensus 484 ~q~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v~--~~~eL~~al~~a~~~---~~~p~liev~i~~ 547 (574)
T PRK06882 484 WQDLIYSGRHSQVYMNSLPDFAKLAEAYGHVGIQID--TPDELEEKLTQAFSI---KDKLVFVDVNVDE 547 (574)
T ss_pred HHHHhcCCcccccCCCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHhc---CCCcEEEEEEecC
Confidence 101 10123578899999999999996 578887777777752 3689999999854
No 119
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=98.46 E-value=2.4e-07 Score=113.53 Aligned_cols=112 Identities=15% Similarity=0.150 Sum_probs=85.9
Q ss_pred cCCcccccceeehHHHHhHHhcCCCCCCCcEEEEEeCccccCCccHHHHHHHhc--CCCCCCcccEEEEEEcCC-ccccc
Q 001713 363 PSHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS--ALPNYSIGGTIHIVVNNQ-VAFTT 439 (1021)
Q Consensus 363 pShlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDgA~sGqG~v~EalnlA--~LP~y~~GGvI~Vv~NNq-~g~tT 439 (1021)
-+.+|.++|.|+|+++|... +-+|++.|||+|. ....|-...+ +|| +++||.||+ ||+..
T Consensus 433 ~g~mG~glpaAiGA~lA~p~---------r~Vv~i~GDG~f~--m~~~eL~Ta~r~~lp------vi~vV~NN~~~g~i~ 495 (616)
T PRK07418 433 LGTMGFGMPAAMGVKVALPD---------EEVICIAGDASFL--MNIQELGTLAQYGIN------VKTVIINNGWQGMVR 495 (616)
T ss_pred ccccccHHHHHHHHHHhCCC---------CcEEEEEcchHhh--hhHHHHHHHHHhCCC------eEEEEEECCcchHHH
Confidence 36699999999999998642 4589999999995 6667766655 999 888888887 56532
Q ss_pred CC------C-C-C----cccccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeee
Q 001713 440 DP------M-S-G----RSSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCY 497 (1021)
Q Consensus 440 ~~------~-~-~----rs~~~~sd~Aka~g~p~~~VdG~D~eAV~~a~~~A~e~rr~~~gPvlIe~vtY 497 (1021)
.. . . . ....++..+|+++|+++++|+ +++++..|.+.|++ .++|+|||+.+.
T Consensus 496 ~~q~~~~~~~~~~~~~~~~~~d~~~~A~a~G~~g~~V~--~~~el~~al~~a~~----~~~p~lIeV~i~ 559 (616)
T PRK07418 496 QWQESFYGERYSASNMEPGMPDFVKLAEAFGVKGMVIS--ERDQLKDAIAEALA----HDGPVLIDVHVR 559 (616)
T ss_pred HHHHHhcCCCceeecCCCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEec
Confidence 10 0 0 0 023578899999999999997 78888888877764 578999999984
No 120
>PLN02573 pyruvate decarboxylase
Probab=98.46 E-value=3.5e-07 Score=111.32 Aligned_cols=112 Identities=14% Similarity=0.123 Sum_probs=86.0
Q ss_pred CCcccccceeehHHHHhHHhcCCCCCCCcEEEEEeCccccCCccHHHHHHHhc--CCCCCCcccEEEEEEcCC-cccccC
Q 001713 364 SHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS--ALPNYSIGGTIHIVVNNQ-VAFTTD 440 (1021)
Q Consensus 364 Shlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDgA~sGqG~v~EalnlA--~LP~y~~GGvI~Vv~NNq-~g~tT~ 440 (1021)
+.+|..+|.|+|+++|... .-+|++.|||+| +..+.|-...+ +|| +++||.||+ ||+...
T Consensus 428 gsmG~glpaaiGa~lA~p~---------r~vv~i~GDG~f--~m~~~EL~Ta~r~~lp------vv~vV~NN~~yg~~~~ 490 (578)
T PLN02573 428 GSIGWSVGATLGYAQAAPD---------KRVIACIGDGSF--QVTAQDVSTMIRCGQK------SIIFLINNGGYTIEVE 490 (578)
T ss_pred hhhhhhhhHHHHHHHhCCC---------CceEEEEeccHH--HhHHHHHHHHHHcCCC------CEEEEEeCCceeEEEe
Confidence 6799999999999999742 469999999999 47777777777 999 888888777 775431
Q ss_pred CC----CCcccccHHHHHhhcC-----ccEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEee
Q 001713 441 PM----SGRSSQYCTDVAKALD-----APIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVC 496 (1021)
Q Consensus 441 ~~----~~rs~~~~sd~Aka~g-----~p~~~VdG~D~eAV~~a~~~A~e~rr~~~gPvlIe~vt 496 (1021)
.. ......+++.+|++|| +++++|+ +++++..+.+.|++. +.++|+|||+.+
T Consensus 491 ~~~~~~~~~~~~d~~~lA~a~G~~~g~~~~~~V~--~~~eL~~al~~a~~~--~~~~p~lieV~v 551 (578)
T PLN02573 491 IHDGPYNVIKNWNYTGLVDAIHNGEGKCWTAKVR--TEEELIEAIATATGE--KKDCLCFIEVIV 551 (578)
T ss_pred ecccCccccCCCCHHHHHHHhcCcCCceeEEEec--CHHHHHHHHHHHHhh--CCCCcEEEEEEc
Confidence 11 1113367889999985 8999998 578888888887642 247899999987
No 121
>COG3957 Phosphoketolase [Carbohydrate transport and metabolism]
Probab=98.46 E-value=3.6e-05 Score=92.41 Aligned_cols=230 Identities=17% Similarity=0.190 Sum_probs=130.3
Q ss_pred HHHHHhcCCc-EEEEcccCC---C--cccccccceeccCCcCcee-----ccCCCcccccCCcccEEecCccchHHHHHH
Q 001713 646 FATLLVEGNH-VRLSGQDVE---R--GTFSHRHSVLHDQETGEQY-----CPLDHVMMNQDAEMFTVSNSSLSEFGVLGF 714 (1021)
Q Consensus 646 ~~~ll~~~~~-Vrl~GeDv~---r--GtF~~RHavl~dq~t~~~y-----~pL~~L~~~~~~g~~rV~nspLSE~~vlGf 714 (1021)
+..+|+.+.+ .||+|-|=- | |+|.+ |...| -+...++ -..||+. +|||.++.|+
T Consensus 411 l~dv~k~N~~~fRvf~PDE~aSNrl~~v~~~---------tkr~~~~~~~~ed~~ls-----p~GRV~e-~LSEh~c~Gw 475 (793)
T COG3957 411 LRDVMKLNPDNFRVFGPDETASNRLGGVLKV---------TKRVWMAVTLPEDDFLS-----PDGRVME-VLSEHACQGW 475 (793)
T ss_pred HHHHHhcCccceEeeCCCcchhhhhHHHHHH---------hhhhhcccccCcccccC-----CCceeeh-hhcHHHHHHH
Confidence 3455666665 999999953 2 67766 33322 1123444 2468999 9999999999
Q ss_pred HHhhccCCCCcceEehhhhhhhHhhHHHHHHHHH----hhhhhhhcCc-cceEEEeCccC-C--CCCcCCcCchhhHhhh
Q 001713 715 ELGYSMENPNSLVMWEAQFGDFANGAQVIFDQFV----NSGESKWLRQ-SGLVVMLPHGY-D--GQGPEHSSARLERFLQ 786 (1021)
Q Consensus 715 e~G~a~~g~~~lviwEaqFgDF~n~Aq~~iDqfi----~s~~~kw~~~-~~lV~~lPhG~-~--G~GpeHSs~r~Er~Lq 786 (1021)
..||++.|-..+. +-|=-|+.----+|.|.. ...+..|.+. .++.+++-.+. + -.|-.|..-.++.++-
T Consensus 476 legy~LtGr~glf---~sYEaF~~iv~sm~nQh~kwl~v~~e~~wr~~~~Sln~l~TS~vw~QdhNGfsHQdPgf~~~~~ 552 (793)
T COG3957 476 LEGYLLTGRHGLF---ASYEAFAHIVDSMFNQHAKWLKVTREVEWRRPIPSLNYLLTSHVWRQDHNGFSHQDPGFIDHVA 552 (793)
T ss_pred HHHHHhcCCccce---eeHHHHHHHHHHHHhhhHHHHHHHHhcccCCCCCcccceeehhhhhcccCCCccCCchHHHHHH
Confidence 9999999999987 666667643322333322 0114444443 34555554444 3 3467787776665421
Q ss_pred ccCCCCCcccCCCchhhhcccccCeEEEecCCHHHHHHHHHHHHhcCCCCcEEEEeeccccCCccccCCccc---ccccC
Q 001713 787 MSDDNPYVIPEMDSTLRTQIQECNWQIVNVTTPANYFHVLRRQIHREFRKPLVVMSPKNLLRHKECKSNLSE---FDDVQ 863 (1021)
Q Consensus 787 l~~e~~~~~~~ipg~~~~~~~~~Nl~Vv~pstpad~fhlLrrqi~~~~~kPliv~~pK~Llr~~~~~s~~~e---~~~~~ 863 (1021)
+ -. ..+++|+.|-+.--.--+.=++++. .++=-+|+.+|.=.-.- . +.++ ...
T Consensus 553 --~-------k~---------~d~vRvyfPpDaNtlLav~d~~l~s-~n~in~iVa~K~p~pq~--~-t~~qA~~~~~-- 608 (793)
T COG3957 553 --N-------KK---------SDIVRVYFPPDANTLLAVYDHCLRS-RNKINVIVASKQPRPQW--L-TMEQAEKHCT-- 608 (793)
T ss_pred --h-------hc---------cCceeEecCCCCcchhhhhhHHhhc-cCceEEEEecCCCccee--e-cHHHHHHHhh--
Confidence 1 11 1379999997776666666666664 34555666676532110 0 0000 000
Q ss_pred CCCCCCCCCCcceEeecCccccccCCCCCeEEEEeechhH-HHHHHHHHHc--CC-----CcEEEEEecccCCCC
Q 001713 864 GHPGFDKQGTRFKRLIKDQNEHSDLEEGIRRLILCSGKVY-YELYEERKKH--SA-----SDIAICRVEQLCPFP 930 (1021)
Q Consensus 864 ~~~~~~~~~~~f~~vi~~~~~~~~~~~g~~~~Iv~~Gk~~-~~l~~a~~~~--~~-----~~v~ii~le~L~Pfp 930 (1021)
. |- .+... +....-..|+|+.|.|.+- .+.++|+..+ .+ .=|-||++..|+|--
T Consensus 609 ----~----G~--~iwew---as~d~gepdvV~A~~Gd~~t~e~laAa~~L~e~~p~l~vRvVnVvdl~rLq~~~ 670 (793)
T COG3957 609 ----D----GA--GIWEW---ASGDDGEPDVVMACAGDVPTIEVLAAAQILREEGPELRVRVVNVVDLMRLQPPH 670 (793)
T ss_pred ----c----Cc--EEEEe---ccCCCCCCCEEEEecCCcchHHHHHHHHHHHHhCccceEEEEEEecchhccCCc
Confidence 0 10 11111 1111114589999999864 4666666544 11 237888999998854
No 122
>PRK08322 acetolactate synthase; Reviewed
Probab=98.45 E-value=4.9e-07 Score=109.09 Aligned_cols=111 Identities=16% Similarity=0.122 Sum_probs=83.8
Q ss_pred CCcccccceeehHHHHhHHhcCCCCCCCcEEEEEeCccccCCccHHHHHHHhc--CCCCCCcccEEEEEEcCC-cccccC
Q 001713 364 SHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS--ALPNYSIGGTIHIVVNNQ-VAFTTD 440 (1021)
Q Consensus 364 Shlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDgA~sGqG~v~EalnlA--~LP~y~~GGvI~Vv~NNq-~g~tT~ 440 (1021)
+.+|..+|.|+|+++|... .-+|++.|||+|. -...|-.+.+ ++| +++||.||+ ||+...
T Consensus 406 g~mG~~lpaaiGa~la~p~---------~~vv~i~GDGsf~--m~~~eL~Ta~~~~lp------v~iiV~NN~~~g~~~~ 468 (547)
T PRK08322 406 ATMGAGLPSAIAAKLVHPD---------RKVLAVCGDGGFM--MNSQELETAVRLGLP------LVVLILNDNAYGMIRW 468 (547)
T ss_pred ccccchhHHHHHHHHhCCC---------CcEEEEEcchhHh--ccHHHHHHHHHhCCC------eEEEEEeCCCcchHHH
Confidence 4599999999999998642 4589999999995 5566665555 999 777777766 775321
Q ss_pred ------CCC---CcccccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeee
Q 001713 441 ------PMS---GRSSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCY 497 (1021)
Q Consensus 441 ------~~~---~rs~~~~sd~Aka~g~p~~~VdG~D~eAV~~a~~~A~e~rr~~~gPvlIe~vtY 497 (1021)
... ....+++..+|++||+++++|+ +++++..+.++|++ .++|+|||+.+-
T Consensus 469 ~~~~~~~~~~~~~~~~~df~~lA~a~G~~~~~v~--~~~eL~~al~~a~~----~~~p~lIev~v~ 528 (547)
T PRK08322 469 KQENMGFEDFGLDFGNPDFVKYAESYGAKGYRVE--SADDLLPTLEEALA----QPGVHVIDCPVD 528 (547)
T ss_pred HHHhhcCCcccccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEec
Confidence 000 1124678999999999999995 68888888888763 478999999874
No 123
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=98.45 E-value=5.5e-07 Score=109.74 Aligned_cols=111 Identities=18% Similarity=0.240 Sum_probs=84.1
Q ss_pred CCcccccceeehHHHHhHHhcCCCCCCCcEEEEEeCccccCCccHHHHHHHhc--CCCCCCcccEEEEEEcCC-ccccc-
Q 001713 364 SHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS--ALPNYSIGGTIHIVVNNQ-VAFTT- 439 (1021)
Q Consensus 364 Shlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDgA~sGqG~v~EalnlA--~LP~y~~GGvI~Vv~NNq-~g~tT- 439 (1021)
+.+|.++|.|+|+++|.+. .-+|++.|||+|. ....|-...+ +|| +++||.||+ ||+-.
T Consensus 430 g~mG~glpaaiGaala~p~---------~~vv~i~GDG~f~--m~~~eL~Ta~~~~l~------~~~vV~NN~~y~~i~~ 492 (585)
T CHL00099 430 GTMGYGLPAAIGAQIAHPN---------ELVICISGDASFQ--MNLQELGTIAQYNLP------IKIIIINNKWQGMVRQ 492 (585)
T ss_pred cchhhhHHHHHHHHHhCCC---------CeEEEEEcchhhh--hhHHHHHHHHHhCCC------eEEEEEECCcchHHHH
Confidence 6699999999999999652 4699999999995 5556655555 999 999999998 44311
Q ss_pred --------CCC--C-CcccccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeee
Q 001713 440 --------DPM--S-GRSSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCY 497 (1021)
Q Consensus 440 --------~~~--~-~rs~~~~sd~Aka~g~p~~~VdG~D~eAV~~a~~~A~e~rr~~~gPvlIe~vtY 497 (1021)
... . .....++..+|++||+++++|+ +++++..+.+.|++ .++|+|||+.+-
T Consensus 493 ~q~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~liev~v~ 555 (585)
T CHL00099 493 WQQAFYGERYSHSNMEEGAPDFVKLAEAYGIKGLRIK--SRKDLKSSLKEALD----YDGPVLIDCQVI 555 (585)
T ss_pred HHHHhcCCCcccccCCCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEEC
Confidence 000 0 0113578899999999999996 57888777777764 578999999983
No 124
>PRK11865 pyruvate ferredoxin oxidoreductase subunit beta; Provisional
Probab=98.43 E-value=3.4e-06 Score=94.45 Aligned_cols=123 Identities=19% Similarity=0.205 Sum_probs=91.6
Q ss_pred CCcccccceeehHHHHhHHhcCCCCCCCcEEEEEeCccccCCccHHHHHHHhc---CCCCCCcccEEEEEEcCCc-cccc
Q 001713 364 SHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS---ALPNYSIGGTIHIVVNNQV-AFTT 439 (1021)
Q Consensus 364 Shlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDgA~sGqG~v~EalnlA---~LP~y~~GGvI~Vv~NNq~-g~tT 439 (1021)
|..|...++|.|++.|.+..+.+ ..+|++.|||++..-| + .+|.-| +.+ ++|||.||.. +.|.
T Consensus 69 ~~fg~~~a~a~Gi~~a~~~~~~~-----~~Vv~~~GDG~~~dIG-~-~~L~~a~~r~~n------i~~ivlDNe~Y~nTG 135 (299)
T PRK11865 69 VAFENAAAVASGIERAVKALGKK-----VNVVAIGGDGGTADIG-F-QSLSGAMERGHN------ILYLMYDNEAYMNTG 135 (299)
T ss_pred hhhcchHHHHHHHHHHHHHhcCC-----CeEEEEeCCchHhhcc-H-HHHHHHHHcCCC------eEEEEECCccccCCC
Confidence 66899999999999998765432 5799999999987344 3 444444 888 9999999994 5542
Q ss_pred CC-CC--------------------CcccccHHHHHhhcCccEE-EEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEe--
Q 001713 440 DP-MS--------------------GRSSQYCTDVAKALDAPIF-HVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLV-- 495 (1021)
Q Consensus 440 ~~-~~--------------------~rs~~~~sd~Aka~g~p~~-~VdG~D~eAV~~a~~~A~e~rr~~~gPvlIe~v-- 495 (1021)
-. +. .....++..++.++|++.+ .++-.|+..+.+++++|.+ .+||.||++.
T Consensus 136 gQ~S~~Tp~Ga~t~tsp~Gk~~~G~~~~kkd~~~Ia~a~g~~YVA~~~~~~~~~l~~~i~~A~~----~~Gps~I~v~sP 211 (299)
T PRK11865 136 IQRSGSTPFGASTTTSPAGKYSRGEDRPKKNMPLIMAAHGIPYVATASIGYPEDFMEKVKKAKE----VEGPAYIQVLQP 211 (299)
T ss_pred CCCCCCCCCCcccccCCCCcccCCCCCCCCCHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHh----CCCCEEEEEECC
Confidence 10 00 1113467889999999977 5688899999999999985 5899999998
Q ss_pred eeccCCCC
Q 001713 496 CYRRFGHN 503 (1021)
Q Consensus 496 tYR~~GHn 503 (1021)
|--.+||.
T Consensus 212 C~~~~~~~ 219 (299)
T PRK11865 212 CPTGWGFP 219 (299)
T ss_pred CCCCCCCC
Confidence 45555553
No 125
>PRK08617 acetolactate synthase; Reviewed
Probab=98.42 E-value=7.4e-07 Score=107.77 Aligned_cols=112 Identities=19% Similarity=0.144 Sum_probs=84.2
Q ss_pred CCcccccceeehHHHHhHHhcCCCCCCCcEEEEEeCccccCCccHHHHHHHhc--CCCCCCcccEEEEEEcCC-cccccC
Q 001713 364 SHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS--ALPNYSIGGTIHIVVNNQ-VAFTTD 440 (1021)
Q Consensus 364 Shlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDgA~sGqG~v~EalnlA--~LP~y~~GGvI~Vv~NNq-~g~tT~ 440 (1021)
+.+|..+|.|+|+++|... .-+|++.|||+|. ....|-...+ +|| +++||.||+ ||+--.
T Consensus 414 g~mG~~lpaaiGa~la~p~---------~~vv~i~GDGsf~--m~~~eL~Ta~~~~lp------v~~vV~NN~~~~~~~~ 476 (552)
T PRK08617 414 QTLGVALPWAIAAALVRPG---------KKVVSVSGDGGFL--FSAMELETAVRLKLN------IVHIIWNDGHYNMVEF 476 (552)
T ss_pred ccccccccHHHhhHhhcCC---------CcEEEEEechHHh--hhHHHHHHHHHhCCC------eEEEEEECCccchHHH
Confidence 4589999999999998642 4689999999995 6667766666 999 888888887 554210
Q ss_pred -----CCC----CcccccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeeec
Q 001713 441 -----PMS----GRSSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYR 498 (1021)
Q Consensus 441 -----~~~----~rs~~~~sd~Aka~g~p~~~VdG~D~eAV~~a~~~A~e~rr~~~gPvlIe~vtYR 498 (1021)
... .....++..+|++||+++++|. +++++..+.+.|+ +.++|+|||+.+-|
T Consensus 477 ~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~----~~~~p~liev~~~~ 537 (552)
T PRK08617 477 QEEMKYGRSSGVDFGPVDFVKYAESFGAKGLRVT--SPDELEPVLREAL----ATDGPVVIDIPVDY 537 (552)
T ss_pred HHHhhcCCcccCCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHH----hCCCcEEEEEEecc
Confidence 000 0123678899999999999886 6788887777776 45789999999854
No 126
>PRK11866 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=98.42 E-value=6.7e-07 Score=99.32 Aligned_cols=112 Identities=20% Similarity=0.162 Sum_probs=84.6
Q ss_pred CCcccccceeehHHHHhHHhcCCCCCCCcEEEEEeCcc-ccCCccHHHHHHHhc--CCCCCCcccEEEEEEcCC-ccccc
Q 001713 364 SHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDG-SFAGQGVVYETLHLS--ALPNYSIGGTIHIVVNNQ-VAFTT 439 (1021)
Q Consensus 364 Shlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDg-A~sGqG~v~EalnlA--~LP~y~~GGvI~Vv~NNq-~g~tT 439 (1021)
+.+|..+|+|+|+++|... .-+|++.||| +|. --..|-.+.+ ++| +++||.||+ ||+|.
T Consensus 59 ~~~G~alp~A~GaklA~Pd---------~~VV~i~GDG~~f~--ig~~eL~tA~rrn~~------i~vIV~nN~~ygmtg 121 (279)
T PRK11866 59 GIHGRVLPIATGVKWANPK---------LTVIGYGGDGDGYG--IGLGHLPHAARRNVD------ITYIVSNNQVYGLTT 121 (279)
T ss_pred cccccHHHHHHHHHHHCCC---------CcEEEEECChHHHH--ccHHHHHHHHHHCcC------cEEEEEEChhhhhhc
Confidence 3469999999999999653 4589999999 564 3367777777 999 899998888 68774
Q ss_pred CCCC------Ccc--c--------ccHHHHHhhcCccEEE-EeCCCHHHHHHHHHHHHHHHHccCCCEEEEEee
Q 001713 440 DPMS------GRS--S--------QYCTDVAKALDAPIFH-VNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVC 496 (1021)
Q Consensus 440 ~~~~------~rs--~--------~~~sd~Aka~g~p~~~-VdG~D~eAV~~a~~~A~e~rr~~~gPvlIe~vt 496 (1021)
-... .+. + .++.++|+++|++.+. ....|++++..+++.|++ .+||.|||+.+
T Consensus 122 gQ~s~~t~~g~~t~~t~~g~~~~~~d~~~iA~a~G~~~Va~~~~~~~~~l~~~l~~Al~----~~Gps~I~v~~ 191 (279)
T PRK11866 122 GQASPTTPRGVKTKTTPDGNIEEPFNPIALALAAGATFVARGFSGDVKHLKEIIKEAIK----HKGFSFIDVLS 191 (279)
T ss_pred ccccCCCCCCceeeccCCCCCCCCCCHHHHHHHCCCCEEEEEcCCCHHHHHHHHHHHHh----CCCCEEEEEeC
Confidence 1110 010 1 2788999999999665 466799999988888874 58999999973
No 127
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=98.42 E-value=7.4e-07 Score=108.13 Aligned_cols=112 Identities=19% Similarity=0.232 Sum_probs=84.5
Q ss_pred CCcccccceeehHHHHhHHhcCCCCCCCcEEEEEeCccccCCccHHHHHHHhc--CCCCCCcccEEEEEEcCC-cccccC
Q 001713 364 SHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS--ALPNYSIGGTIHIVVNNQ-VAFTTD 440 (1021)
Q Consensus 364 Shlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDgA~sGqG~v~EalnlA--~LP~y~~GGvI~Vv~NNq-~g~tT~ 440 (1021)
+.+|..+|.|+|+++|... ..+|++.|||+|. -.+.|-...+ +|| +|+||.||+ ||+...
T Consensus 414 g~mG~~l~~aiGa~la~p~---------~~vv~i~GDG~f~--m~~~eL~Ta~~~~lp------vi~vV~NN~~~~~i~~ 476 (563)
T PRK08527 414 GTMGYGLPAALGAKLAVPD---------KVVINFTGDGSIL--MNIQELMTAVEYKIP------VINIILNNNFLGMVRQ 476 (563)
T ss_pred ccccchHHHHHHHHHhCCC---------CcEEEEecCchhc--ccHHHHHHHHHhCCC------eEEEEEECCcchhHHH
Confidence 5699999999999998642 4589999999995 5667754444 999 888888887 554210
Q ss_pred ---------C--CCCcccccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeeec
Q 001713 441 ---------P--MSGRSSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYR 498 (1021)
Q Consensus 441 ---------~--~~~rs~~~~sd~Aka~g~p~~~VdG~D~eAV~~a~~~A~e~rr~~~gPvlIe~vtYR 498 (1021)
. .+.....++..+|++||+.+++|+ +++++..+.+.|++ .++|+|||+.+.+
T Consensus 477 ~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~lieV~v~~ 539 (563)
T PRK08527 477 WQTFFYEERYSETDLSTQPDFVKLAESFGGIGFRVT--TKEEFDKALKEALE----SDKVALIDVKIDR 539 (563)
T ss_pred HHHhhcCCceeeccCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEECC
Confidence 0 011113578889999999999996 67888777777753 5789999999976
No 128
>PRK08367 porA pyruvate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=98.42 E-value=8.8e-06 Score=94.70 Aligned_cols=228 Identities=12% Similarity=0.094 Sum_probs=142.2
Q ss_pred cchHHHHHHHHhhccCCCCcceEehhhhhhhHhhHHHHHHHHHhhhhhhhcCccceEEEeCc-cCC-CCC--cCCcCchh
Q 001713 706 LSEFGVLGFELGYSMENPNSLVMWEAQFGDFANGAQVIFDQFVNSGESKWLRQSGLVVMLPH-GYD-GQG--PEHSSARL 781 (1021)
Q Consensus 706 LSE~~vlGfe~G~a~~g~~~lviwEaqFgDF~n~Aq~~iDqfi~s~~~kw~~~~~lV~~lPh-G~~-G~G--peHSs~r~ 781 (1021)
=||.+.++.++|.|++|-|.++ +.=|-=++.+ .+.+.. --+...|+||.+.. +.. +.+ ++||+.-
T Consensus 57 EsE~aA~~~~~GAs~aGaRa~T---aTS~~Gl~lm---~E~l~~----aag~~lP~V~vv~~R~~~~p~~i~~d~~D~~- 125 (394)
T PRK08367 57 ESEHSAISACVGASAAGVRTFT---ATASQGLALM---HEVLFI----AAGMRLPIVMAIGNRALSAPINIWNDWQDTI- 125 (394)
T ss_pred CCHHHHHHHHHHHHhhCCCeEe---eeccchHHHH---hhHHHH----HHHccCCEEEEECCCCCCCCCCcCcchHHHH-
Confidence 4899999999999999999998 5444333333 455432 12346899888732 221 212 2666651
Q ss_pred hHhhhccCCCCCcccCCCchhhhcccccCeEEEecCCHHHHHHHHHHHHhc----CCCCcEEEEeeccccCCccccCCc-
Q 001713 782 ERFLQMSDDNPYVIPEMDSTLRTQIQECNWQIVNVTTPANYFHVLRRQIHR----EFRKPLVVMSPKNLLRHKECKSNL- 856 (1021)
Q Consensus 782 Er~Lql~~e~~~~~~~ipg~~~~~~~~~Nl~Vv~pstpad~fhlLrrqi~~----~~~kPliv~~pK~Llr~~~~~s~~- 856 (1021)
.+++.+|.+++|+|+.++|.+...+..- .+.-|++++....++-|-.....+
T Consensus 126 -----------------------~~rd~g~~~~~a~~~QEa~D~~~~Af~lAE~~~~~~Pviv~~Dgf~~sH~~e~v~~~ 182 (394)
T PRK08367 126 -----------------------SQRDTGWMQFYAENNQEALDLILIAFKVAEDERVLLPAMVGFDAFILTHTVEPVEIP 182 (394)
T ss_pred -----------------------hccccCeEEEeCCCHHHHHHHHHHHHHHHHHhCcCCCEEEEechhhhcCcccccccC
Confidence 1234679999999999999999888652 244799999999876654322111
Q ss_pred --c---ccc---------ccCCCCC----CCCCCCcceEe-------------ecC--------ccc--cccC---CCCC
Q 001713 857 --S---EFD---------DVQGHPG----FDKQGTRFKRL-------------IKD--------QNE--HSDL---EEGI 892 (1021)
Q Consensus 857 --~---e~~---------~~~~~~~----~~~~~~~f~~v-------------i~~--------~~~--~~~~---~~g~ 892 (1021)
+ ++. ..|.+|- ...|+..++-. +.+ .|. ..+. .+..
T Consensus 183 ~~~~~~~~~~~~~~~~~~~d~~~p~~~g~~~~p~~~~~~~~~~~~~~~~~~~~i~e~~~e~~~~~grky~~~e~yg~eDA 262 (394)
T PRK08367 183 DQEVVDEFLGEYEPKHAYLDPARPITQGALAFPAHYMEARYTVWEAMENAKKVIDEAFAEFEKKFGRKYQKIEEYRTEDA 262 (394)
T ss_pred CHHHHhhhcCcccccccccCCCCCcccCCCCCCCceEEEEeecHHHHHHhHHHHHHHHHHHHHHhCCccceeEEeCCCCC
Confidence 1 110 0011221 01111111000 000 110 0011 1457
Q ss_pred eEEEEeechhHHHHHHHHHHc--CCCcEEEEEecccCCCCHHHHHHHHHcCCCceEEEEecCCcccchHhhHHHHHHHHH
Q 001713 893 RRLILCSGKVYYELYEERKKH--SASDIAICRVEQLCPFPYDLVQRELKRYPNAEVVWSQEEPMNMGAYTYIAPRLCTAM 970 (1021)
Q Consensus 893 ~~~Iv~~Gk~~~~l~~a~~~~--~~~~v~ii~le~L~Pfp~~~i~~~l~k~~~~~~vwvqEe~~n~G~~~~v~~~i~~~~ 970 (1021)
|.+|||+|.++..+.++.+.+ ++.+|-+++++.++|||.+.|.+.+++..++ +++ |-..+.|..+-+..-+..++
T Consensus 263 e~viV~~GS~~~~~keav~~LR~~G~kVGllri~~~rPFP~~~i~~~l~~~k~V--iVv-E~n~s~g~~g~l~~dV~aal 339 (394)
T PRK08367 263 EIIFVTMGSLAGTLKEFVDKLREEGYKVGAAKLTVYRPFPVEEIRALAKKAKVL--AFL-EKNISFGLGGAVFADASAAL 339 (394)
T ss_pred CEEEEEeCccHHHHHHHHHHHHhcCCcceeEEEeEecCCCHHHHHHHHccCCEE--EEE-eCCCCCCCCCcHHHHHHHHH
Confidence 899999999999888887764 5688999999999999999999989887765 666 44445566544544444444
No 129
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=98.41 E-value=6.3e-07 Score=108.96 Aligned_cols=114 Identities=18% Similarity=0.163 Sum_probs=86.2
Q ss_pred CCcccccceeehHHHHhHHhcCCCCCCCcEEEEEeCccccCCccHHHHHHHhc--CCCCCCcccEEEEEEcCC-ccccc-
Q 001713 364 SHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS--ALPNYSIGGTIHIVVNNQ-VAFTT- 439 (1021)
Q Consensus 364 Shlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDgA~sGqG~v~EalnlA--~LP~y~~GGvI~Vv~NNq-~g~tT- 439 (1021)
+.+|.++|.|+|+++|... .-+|++.|||+|. -...|--..+ +|| +++||.||+ ||+-.
T Consensus 421 g~mG~glpaaiGa~la~p~---------~~vv~i~GDG~f~--m~~~eL~Ta~r~~l~------v~ivV~NN~~yg~i~~ 483 (574)
T PRK07979 421 GTMGFGLPAALGVKMALPE---------ETVVCVTGDGSIQ--MNIQELSTALQYELP------VLVLNLNNRYLGMVKQ 483 (574)
T ss_pred cchhhHHHHHHHHHHhCCC---------CeEEEEEcchhhh--ccHHHHHHHHHhCCC------eEEEEEeCchhhHHHH
Confidence 6699999999999999642 4589999999995 5555555555 999 888888887 66521
Q ss_pred --------CCCCC--cccccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeee
Q 001713 440 --------DPMSG--RSSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCY 497 (1021)
Q Consensus 440 --------~~~~~--rs~~~~sd~Aka~g~p~~~VdG~D~eAV~~a~~~A~e~rr~~~gPvlIe~vtY 497 (1021)
..... ....++..+|++||+++++|+ +++++..+.+.|++..+ .++|+|||+.+-
T Consensus 484 ~q~~~~~~~~~~~~~~~~~d~~~iA~a~G~~g~~v~--~~~eL~~al~~a~~~~~-~~~p~lIeV~i~ 548 (574)
T PRK07979 484 WQDMIYSGRHSQSYMQSLPDFVRLAEAYGHVGIQIS--HPDELESKLSEALEQVR-NNRLVFVDVTVD 548 (574)
T ss_pred HHHHhcCCccccccCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHhccC-CCCcEEEEEEEC
Confidence 11111 123578899999999999985 78899888888886533 368999999984
No 130
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=98.41 E-value=5.4e-07 Score=109.08 Aligned_cols=112 Identities=21% Similarity=0.220 Sum_probs=84.6
Q ss_pred CCcccccceeehHHHHhHHhcCCCCCCCcEEEEEeCccccCCccHHHHHHHhc--CCCCCCcccEEEEEEcCCc-cccc-
Q 001713 364 SHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS--ALPNYSIGGTIHIVVNNQV-AFTT- 439 (1021)
Q Consensus 364 Shlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDgA~sGqG~v~EalnlA--~LP~y~~GGvI~Vv~NNq~-g~tT- 439 (1021)
+.+|..+|.|+|+++|... ..+|++.|||+|. -.+.|-.+.+ +|| +++||.||+. ++..
T Consensus 412 g~mG~~l~aaiGa~la~~~---------~~vv~~~GDG~f~--~~~~eL~ta~~~~l~------~~~vv~NN~~~~~~~~ 474 (558)
T TIGR00118 412 GTMGFGLPAAIGAKVAKPE---------STVICITGDGSFQ--MNLQELSTAVQYDIP------VKILILNNRYLGMVRQ 474 (558)
T ss_pred ccccchhhHHHhhhhhCCC---------CcEEEEEcchHHh--ccHHHHHHHHHhCCC------eEEEEEeCCchHHHHH
Confidence 4589999999999998532 4689999999996 3566655555 999 8999999984 5332
Q ss_pred ------CC---C-CCcccccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeeec
Q 001713 440 ------DP---M-SGRSSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYR 498 (1021)
Q Consensus 440 ------~~---~-~~rs~~~~sd~Aka~g~p~~~VdG~D~eAV~~a~~~A~e~rr~~~gPvlIe~vtYR 498 (1021)
.. . ......++..+|++||+++++|+. ++++..+.+.|++ .++|+|||+.+-+
T Consensus 475 ~q~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~--~~~l~~al~~a~~----~~~p~liev~~~~ 537 (558)
T TIGR00118 475 WQELFYEERYSHTHMGSLPDFVKLAEAYGIKGIRIEK--PEELDEKLKEALS----SNEPVLLDVVVDK 537 (558)
T ss_pred HHHHhcCCceeeccCCCCCCHHHHHHHCCCeEEEECC--HHHHHHHHHHHHh----CCCCEEEEEEeCC
Confidence 00 0 111236789999999999999885 7888888887774 3789999999854
No 131
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=98.40 E-value=6.1e-07 Score=109.04 Aligned_cols=113 Identities=19% Similarity=0.145 Sum_probs=84.7
Q ss_pred CCcccccceeehHHHHhHHhcCCCCCCCcEEEEEeCccccCCccHHHHHHHhc--CCCCCCcccEEEEEEcCC-cccccC
Q 001713 364 SHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS--ALPNYSIGGTIHIVVNNQ-VAFTTD 440 (1021)
Q Consensus 364 Shlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDgA~sGqG~v~EalnlA--~LP~y~~GGvI~Vv~NNq-~g~tT~ 440 (1021)
+.+|.++|.|+|+++|..+ .-+|++.|||+|. -.+.|-...+ +|| +++||.||+ ||+-..
T Consensus 423 gsmG~glpaAiGa~la~p~---------r~Vv~i~GDG~f~--m~~~eL~Ta~r~~lp------v~ivV~NN~~y~~i~~ 485 (574)
T PRK06466 423 GTMGFGLPAAMGVKLAFPD---------QDVACVTGEGSIQ--MNIQELSTCLQYGLP------VKIINLNNGALGMVRQ 485 (574)
T ss_pred chhhchHHHHHHHHHhCCC---------CeEEEEEcchhhh--ccHHHHHHHHHhCCC------eEEEEEeCCccHHHHH
Confidence 5689999999999999642 4589999999995 5556655555 999 888888887 664210
Q ss_pred ---------CCCC--cccccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeeec
Q 001713 441 ---------PMSG--RSSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYR 498 (1021)
Q Consensus 441 ---------~~~~--rs~~~~sd~Aka~g~p~~~VdG~D~eAV~~a~~~A~e~rr~~~gPvlIe~vtYR 498 (1021)
.... ....++..+|++||+++++|+ +++++..+.+.|++. -++|+|||+.+-+
T Consensus 486 ~q~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~~---~~~p~lIev~i~~ 549 (574)
T PRK06466 486 WQDMQYEGRHSHSYMESLPDFVKLAEAYGHVGIRIT--DLKDLKPKLEEAFAM---KDRLVFIDIYVDR 549 (574)
T ss_pred HHHHhcCCceeecCCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhc---CCCcEEEEEEeCC
Confidence 0000 123578899999999999985 788888888888742 2789999999843
No 132
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=98.40 E-value=6.3e-07 Score=108.85 Aligned_cols=112 Identities=19% Similarity=0.228 Sum_probs=85.2
Q ss_pred CCcccccceeehHHHHhHHhcCCCCCCCcEEEEEeCccccCCccHHHHHHHhc--CCCCCCcccEEEEEEcCC-cccccC
Q 001713 364 SHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS--ALPNYSIGGTIHIVVNNQ-VAFTTD 440 (1021)
Q Consensus 364 Shlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDgA~sGqG~v~EalnlA--~LP~y~~GGvI~Vv~NNq-~g~tT~ 440 (1021)
+.+|.++|.|+|+++|... .-+|++.|||+|. -...|-..++ +|| +++||.||+ ||+...
T Consensus 421 g~mG~glpaAiGa~la~p~---------~~vv~i~GDG~f~--m~~~eL~Ta~~~~l~------i~ivV~NN~~yg~i~~ 483 (572)
T PRK06456 421 GTMGFGLPAAMGAKLARPD---------KVVVDLDGDGSFL--MTGTNLATAVDEHIP------VISVIFDNRTLGLVRQ 483 (572)
T ss_pred ccccchhHHHHHHHHhCCC---------CeEEEEEccchHh--cchHHHHHHHHhCCC------eEEEEEECCchHHHHH
Confidence 6699999999999999642 4699999999995 5556655555 999 888888887 776421
Q ss_pred ---------CC--CCcccccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeeec
Q 001713 441 ---------PM--SGRSSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYR 498 (1021)
Q Consensus 441 ---------~~--~~rs~~~~sd~Aka~g~p~~~VdG~D~eAV~~a~~~A~e~rr~~~gPvlIe~vtYR 498 (1021)
.. +.....++..+|++||+.+++|+ +++++..+.+.|. +.++|+|||+.+-+
T Consensus 484 ~q~~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~~v~--~~~eL~~al~~a~----~~~~p~lIev~v~~ 546 (572)
T PRK06456 484 VQDLFFGKRIVGVDYGPSPDFVKLAEAFGALGFNVT--TYEDIEKSLKSAI----KEDIPAVIRVPVDK 546 (572)
T ss_pred HHHHhhCCCcccccCCCCCCHHHHHHHCCCeeEEeC--CHHHHHHHHHHHH----hCCCCEEEEEEeCc
Confidence 00 00123678999999999999885 6888887777775 34789999999855
No 133
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.
Probab=98.40 E-value=5.1e-07 Score=108.95 Aligned_cols=110 Identities=21% Similarity=0.228 Sum_probs=83.0
Q ss_pred CCcccccceeehHHHHhHHhcCCCCCCCcEEEEEeCccccCCccHHHHHHHhc--CCCCCCcccEEEEEEcCC-cccccC
Q 001713 364 SHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS--ALPNYSIGGTIHIVVNNQ-VAFTTD 440 (1021)
Q Consensus 364 Shlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDgA~sGqG~v~EalnlA--~LP~y~~GGvI~Vv~NNq-~g~tT~ 440 (1021)
+.+|.++|.|+|+++|... .-+||+.|||+|. -..+|-...+ +|| +++||.||+ ||+-..
T Consensus 404 g~mG~glpaaiGa~la~p~---------~~vv~i~GDG~f~--m~~~EL~Ta~~~~lp------i~~vV~NN~~y~~i~~ 466 (539)
T TIGR03393 404 GSIGYTLPAAFGAQTACPN---------RRVILLIGDGSAQ--LTIQELGSMLRDKQH------PIILVLNNEGYTVERA 466 (539)
T ss_pred hhhhhHHHHHHHHHhcCCC---------CCeEEEEcCcHHH--hHHHHHHHHHHcCCC------CEEEEEeCCceEEEEe
Confidence 6799999999999998642 4589999999994 6677766666 999 777777776 675321
Q ss_pred C------CCCcccccHHHHHhhcCcc----EEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEee
Q 001713 441 P------MSGRSSQYCTDVAKALDAP----IFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVC 496 (1021)
Q Consensus 441 ~------~~~rs~~~~sd~Aka~g~p----~~~VdG~D~eAV~~a~~~A~e~rr~~~gPvlIe~vt 496 (1021)
. .......+...+|++||++ +++|. +++++..+.+.|+ +.++|+|||+.+
T Consensus 467 ~~~~~~~~~~~~~~df~~la~a~G~~~~~~~~~v~--~~~el~~al~~a~----~~~~p~liev~i 526 (539)
T TIGR03393 467 IHGAEQRYNDIALWNWTHLPQALSLDPQSECWRVS--EAEQLADVLEKVA----AHERLSLIEVVL 526 (539)
T ss_pred ecCCCCCcCcCCCCCHHHHHHHcCCCCccceEEec--cHHHHHHHHHHHh----ccCCeEEEEEEc
Confidence 0 0011236788999999996 78885 6788877777775 457899999987
No 134
>PRK08611 pyruvate oxidase; Provisional
Probab=98.39 E-value=7.9e-07 Score=108.18 Aligned_cols=112 Identities=24% Similarity=0.260 Sum_probs=84.4
Q ss_pred CCcccccceeehHHHHhHHhcCCCCCCCcEEEEEeCccccCCccHHHHHHHhc--CCCCCCcccEEEEEEcCC-ccccc-
Q 001713 364 SHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS--ALPNYSIGGTIHIVVNNQ-VAFTT- 439 (1021)
Q Consensus 364 Shlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDgA~sGqG~v~EalnlA--~LP~y~~GGvI~Vv~NNq-~g~tT- 439 (1021)
+.+|.++|.|+|+++|... .-+|++.|||+|. -...|-...+ +|| +|+||.||+ ||+-.
T Consensus 408 g~mG~glpaaiGa~la~p~---------~~Vv~i~GDGsf~--m~~~eL~Ta~r~~l~------~iivV~NN~~~g~i~~ 470 (576)
T PRK08611 408 GTMGCGLPGAIAAKIAFPD---------RQAIAICGDGGFS--MVMQDFVTAVKYKLP------IVVVVLNNQQLAFIKY 470 (576)
T ss_pred hhhhhhHHHHHHHHHhCCC---------CcEEEEEcccHHh--hhHHHHHHHHHhCCC------eEEEEEeCCcchHHHH
Confidence 4589999999999998642 4589999999995 5567766666 999 777777776 67521
Q ss_pred ----CC--C--CCcccccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeeec
Q 001713 440 ----DP--M--SGRSSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYR 498 (1021)
Q Consensus 440 ----~~--~--~~rs~~~~sd~Aka~g~p~~~VdG~D~eAV~~a~~~A~e~rr~~~gPvlIe~vtYR 498 (1021)
.. . ......++..+|++||+++++|+ +++++..+.+.|. +.++|+|||+.+-+
T Consensus 471 ~q~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~----~~~~p~lIeV~vd~ 531 (576)
T PRK08611 471 EQQAAGELEYAIDLSDMDYAKFAEACGGKGYRVE--KAEELDPAFEEAL----AQDKPVIIDVYVDP 531 (576)
T ss_pred HHHHhcCCcccccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHH----hCCCCEEEEEEeCC
Confidence 00 0 01124678999999999999995 6888888877776 34889999999854
No 135
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=98.37 E-value=1e-06 Score=107.47 Aligned_cols=110 Identities=15% Similarity=0.206 Sum_probs=83.1
Q ss_pred CCcccccceeehHHHHhHHhcCCCCCCCcEEEEEeCccccCCccHHHHHHHhc--CCCCCCcccEEEEEEcCC-cccccC
Q 001713 364 SHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS--ALPNYSIGGTIHIVVNNQ-VAFTTD 440 (1021)
Q Consensus 364 Shlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDgA~sGqG~v~EalnlA--~LP~y~~GGvI~Vv~NNq-~g~tT~ 440 (1021)
+.+|..+|.|+|+++|... .-+|++.|||+|. -...|-..++ +|| +++||.||+ ||+...
T Consensus 419 gsmG~~lpaaiGa~la~p~---------~~Vv~i~GDGsf~--m~~~eL~Ta~~~~lp------v~~vV~NN~~~g~~~~ 481 (586)
T PRK06276 419 GTMGFGFPAAIGAKVAKPD---------ANVIAITGDGGFL--MNSQELATIAEYDIP------VVICIFDNRTLGMVYQ 481 (586)
T ss_pred cccccchhHHHhhhhhcCC---------CcEEEEEcchHhh--ccHHHHHHHHHhCCC------eEEEEEeCCchHHHHH
Confidence 4589999999999998532 3589999999995 5556655555 999 888888887 665320
Q ss_pred ---------CCCC--cccccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEee
Q 001713 441 ---------PMSG--RSSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVC 496 (1021)
Q Consensus 441 ---------~~~~--rs~~~~sd~Aka~g~p~~~VdG~D~eAV~~a~~~A~e~rr~~~gPvlIe~vt 496 (1021)
.... ....++..+|+++|+.++.|+ +++++..+.++|++ .++|+|||+.+
T Consensus 482 ~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~lIeV~i 542 (586)
T PRK06276 482 WQNLYYGKRQSEVHLGETPDFVKLAESYGVKADRVE--KPDEIKEALKEAIK----SGEPYLLDIII 542 (586)
T ss_pred HHHHHhCCCcccccCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEe
Confidence 1101 123578889999999999985 68898888888763 47899999998
No 136
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=98.36 E-value=8.9e-07 Score=107.01 Aligned_cols=112 Identities=18% Similarity=0.203 Sum_probs=83.4
Q ss_pred CCcccccceeehHHHHhHHhcCCCCCCCcEEEEEeCccccCCccHHHHHHHhc--CCCCCCcccEEEEEEcCC-ccccc-
Q 001713 364 SHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS--ALPNYSIGGTIHIVVNNQ-VAFTT- 439 (1021)
Q Consensus 364 Shlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDgA~sGqG~v~EalnlA--~LP~y~~GGvI~Vv~NNq-~g~tT- 439 (1021)
+.+|.++|.|+|+++|... .-+|++.|||+|. -...|-...+ ++| +++||.||+ ||+-.
T Consensus 401 g~mG~glpaAiGa~la~p~---------~~vv~i~GDG~f~--~~~~eL~ta~~~~l~------v~ivV~NN~~~~~~~~ 463 (548)
T PRK08978 401 GTMGFGLPAAIGAQVARPD---------DTVICVSGDGSFM--MNVQELGTIKRKQLP------VKIVLLDNQRLGMVRQ 463 (548)
T ss_pred hhhhchHHHHHHHHHhCCC---------CcEEEEEccchhh--ccHHHHHHHHHhCCC------eEEEEEeCCccHHHHH
Confidence 5689999999999998632 4589999999995 5556655555 999 777777776 66431
Q ss_pred ------C--CCC--CcccccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeeec
Q 001713 440 ------D--PMS--GRSSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYR 498 (1021)
Q Consensus 440 ------~--~~~--~rs~~~~sd~Aka~g~p~~~VdG~D~eAV~~a~~~A~e~rr~~~gPvlIe~vtYR 498 (1021)
. ... .....+...+|++||+++++|+ +++++..|.+.|++ .++|.|||+.+-+
T Consensus 464 ~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~lIeV~id~ 526 (548)
T PRK08978 464 WQQLFFDERYSETDLSDNPDFVMLASAFGIPGQTIT--RKDQVEAALDTLLN----SEGPYLLHVSIDE 526 (548)
T ss_pred HHHHHhCCcceecCCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEecC
Confidence 0 000 0123578899999999999995 78888888777763 5789999999854
No 137
>PLN02470 acetolactate synthase
Probab=98.36 E-value=1.2e-06 Score=106.68 Aligned_cols=111 Identities=20% Similarity=0.227 Sum_probs=83.4
Q ss_pred CCcccccceeehHHHHhHHhcCCCCCCCcEEEEEeCccccCCccHHHHHHHhc--CCCCCCcccEEEEEEcCC-ccccc-
Q 001713 364 SHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS--ALPNYSIGGTIHIVVNNQ-VAFTT- 439 (1021)
Q Consensus 364 Shlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDgA~sGqG~v~EalnlA--~LP~y~~GGvI~Vv~NNq-~g~tT- 439 (1021)
+.+|.++|.|+|++.|... .-+|++.|||+|. -...|--... +|| +++||.||+ ||+-.
T Consensus 426 g~mG~glpaaiGa~la~p~---------~~Vv~i~GDG~f~--m~~~eL~Ta~~~~l~------v~ivV~NN~~yg~i~~ 488 (585)
T PLN02470 426 GAMGFGLPAAIGAAAANPD---------AIVVDIDGDGSFI--MNIQELATIHVENLP------VKIMVLNNQHLGMVVQ 488 (585)
T ss_pred ccccchHHHHHHHHHhCCC---------CcEEEEEccchhh--ccHHHHHHHHHhCCC------eEEEEEeCCcchHHHH
Confidence 5699999999999999642 3589999999995 4456555555 999 888888887 55421
Q ss_pred --------CCCCCc---------ccccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeee
Q 001713 440 --------DPMSGR---------SSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCY 497 (1021)
Q Consensus 440 --------~~~~~r---------s~~~~sd~Aka~g~p~~~VdG~D~eAV~~a~~~A~e~rr~~~gPvlIe~vtY 497 (1021)
+..... ...+.+.+|++||+++++|+ +++++..|++.|.+ -++|+|||+.+-
T Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~iA~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~lieV~i~ 557 (585)
T PLN02470 489 WEDRFYKANRAHTYLGDPDAEAEIFPDFLKFAEGCKIPAARVT--RKSDLREAIQKMLD----TPGPYLLDVIVP 557 (585)
T ss_pred HHHHHhCCceeeeecCccccccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEeC
Confidence 000000 01578899999999999996 68888888888864 478999999984
No 138
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=98.36 E-value=1.2e-06 Score=106.79 Aligned_cols=112 Identities=17% Similarity=0.137 Sum_probs=84.4
Q ss_pred CCcccccceeehHHHHhHHhcCCCCCCCcEEEEEeCccccCCccHHHHHHHhc--CCCCCCcccEEEEEEcCC-ccccc-
Q 001713 364 SHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS--ALPNYSIGGTIHIVVNNQ-VAFTT- 439 (1021)
Q Consensus 364 Shlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDgA~sGqG~v~EalnlA--~LP~y~~GGvI~Vv~NNq-~g~tT- 439 (1021)
+.+|.++|.|+|+++|... .-+|++.|||+|. -...|-...+ +|| +++||.||+ ||+-.
T Consensus 437 gsmG~glpaaiGa~lA~p~---------r~Vv~i~GDGsf~--m~~~eL~Ta~r~~lp------viivV~NN~~~~~i~~ 499 (587)
T PRK06965 437 GTMGVGLPYAMGIKMAHPD---------DDVVCITGEGSIQ--MCIQELSTCLQYDTP------VKIISLNNRYLGMVRQ 499 (587)
T ss_pred ccccchHHHHHHHHHhCCC---------CcEEEEEcchhhh--cCHHHHHHHHHcCCC------eEEEEEECCcchHHHH
Confidence 5699999999999999642 4599999999995 5555555444 999 888888888 55421
Q ss_pred --------CCCCC--cccccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeee
Q 001713 440 --------DPMSG--RSSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCY 497 (1021)
Q Consensus 440 --------~~~~~--rs~~~~sd~Aka~g~p~~~VdG~D~eAV~~a~~~A~e~rr~~~gPvlIe~vtY 497 (1021)
..... ...++...+|++||+++++|+ +++++..+.+.|++. -++|+|||+.+-
T Consensus 500 ~q~~~~~~~~~~~~~~~~~d~~~iA~a~G~~~~~v~--~~~eL~~al~~a~~~---~~~p~lieV~i~ 562 (587)
T PRK06965 500 WQEIEYSKRYSHSYMDALPDFVKLAEAYGHVGMRIE--KTSDVEPALREALRL---KDRTVFLDFQTD 562 (587)
T ss_pred HHHHhcCCCccccCCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHhc---CCCcEEEEEEec
Confidence 11100 023578899999999999996 688888888888752 368999999883
No 139
>PRK11867 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed
Probab=98.35 E-value=1.1e-06 Score=98.16 Aligned_cols=110 Identities=16% Similarity=0.134 Sum_probs=82.3
Q ss_pred CcccccceeehHHHHhHHhcCCCCCCCcEEEEEeCccc-cCCccHHHHHHHhc--CCCCCCcccEEEEEEcCC-cccccC
Q 001713 365 HLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGS-FAGQGVVYETLHLS--ALPNYSIGGTIHIVVNNQ-VAFTTD 440 (1021)
Q Consensus 365 hlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDgA-~sGqG~v~EalnlA--~LP~y~~GGvI~Vv~NNq-~g~tT~ 440 (1021)
.+|..+|.|+|+++|... .-+|++.|||+ +. --..|..+.+ ++| +++||.||+ ||++..
T Consensus 70 ~mG~alpaAiGaklA~Pd---------~~VV~i~GDG~~f~--mg~~eL~tA~r~nl~------i~vIV~NN~~yGmt~~ 132 (286)
T PRK11867 70 IHGRALAIATGLKLANPD---------LTVIVVTGDGDALA--IGGNHFIHALRRNID------ITYILFNNQIYGLTKG 132 (286)
T ss_pred hhhcHHHHHHHHHHhCCC---------CcEEEEeCccHHHh--CCHHHHHHHHHhCCC------cEEEEEeCHHHhhhcC
Confidence 479999999999999653 46999999996 53 3366777767 999 888888887 687642
Q ss_pred CCC------Cc----------ccccHHHHHhhcCccEE-EEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEe
Q 001713 441 PMS------GR----------SSQYCTDVAKALDAPIF-HVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLV 495 (1021)
Q Consensus 441 ~~~------~r----------s~~~~sd~Aka~g~p~~-~VdG~D~eAV~~a~~~A~e~rr~~~gPvlIe~v 495 (1021)
... .+ ...+...+|.++|+..+ ++.-.+++++..+++.|++ .++|+|||+.
T Consensus 133 q~s~tt~~g~~~~~~~~g~~~~~~d~~~lA~a~Ga~~va~~~~~~~~el~~al~~Al~----~~Gp~lIev~ 200 (286)
T PRK11867 133 QYSPTSPVGFVTKTTPYGSIEPPFNPVELALGAGATFVARGFDSDVKQLTELIKAAIN----HKGFSFVEIL 200 (286)
T ss_pred ccCCCCCCCcccccccCCCCCCCCCHHHHHHHCCCcEEEEecCCCHHHHHHHHHHHHh----CCCCEEEEEe
Confidence 110 00 01457789999999876 4456689999888888874 5789999996
No 140
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=98.35 E-value=1.1e-06 Score=106.49 Aligned_cols=112 Identities=23% Similarity=0.209 Sum_probs=84.3
Q ss_pred CCcccccceeehHHHHhHHhcCCCCCCCcEEEEEeCccccCCccHHHHHHHhc--CCCCCCcccEEEEEEcCC-ccccc-
Q 001713 364 SHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS--ALPNYSIGGTIHIVVNNQ-VAFTT- 439 (1021)
Q Consensus 364 Shlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDgA~sGqG~v~EalnlA--~LP~y~~GGvI~Vv~NNq-~g~tT- 439 (1021)
+.+|.++|.|+|+++|... .-+|++.|||+|. -.+.|-...+ +|| +++||.||+ |++-.
T Consensus 414 g~mG~glpaaiGa~la~p~---------~~Vv~i~GDG~f~--m~~~eL~Ta~~~~l~------i~~vV~NN~~y~~i~~ 476 (561)
T PRK06048 414 GTMGYGFPAAIGAKVGKPD---------KTVIDIAGDGSFQ--MNSQELATAVQNDIP------VIVAILNNGYLGMVRQ 476 (561)
T ss_pred cccccHHHHHHHHHHhCCC---------CcEEEEEeCchhh--ccHHHHHHHHHcCCC------eEEEEEECCccHHHHH
Confidence 4689999999999998642 4589999999995 5667766666 999 888888886 66421
Q ss_pred --------CCCCCc--ccccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeeec
Q 001713 440 --------DPMSGR--SSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYR 498 (1021)
Q Consensus 440 --------~~~~~r--s~~~~sd~Aka~g~p~~~VdG~D~eAV~~a~~~A~e~rr~~~gPvlIe~vtYR 498 (1021)
...... ...++..+|++||+++++|+ +++++..+.+.|+ +.++|+|||+.+-+
T Consensus 477 ~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--t~~el~~al~~a~----~~~~p~liev~~~~ 539 (561)
T PRK06048 477 WQELFYDKRYSHTCIKGSVDFVKLAEAYGALGLRVE--KPSEVRPAIEEAV----ASDRPVVIDFIVEC 539 (561)
T ss_pred HHHHHcCCcccccCCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHH----hCCCCEEEEEEecC
Confidence 111011 24678899999999999987 5788887877776 35789999999843
No 141
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=98.35 E-value=1.4e-06 Score=105.98 Aligned_cols=113 Identities=19% Similarity=0.163 Sum_probs=84.7
Q ss_pred CCcccccceeehHHHHhHHhcCCCCCCCcEEEEEeCccccCCccHHHHHHHhc--CCCCCCcccEEEEEEcCC-cccccC
Q 001713 364 SHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS--ALPNYSIGGTIHIVVNNQ-VAFTTD 440 (1021)
Q Consensus 364 Shlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDgA~sGqG~v~EalnlA--~LP~y~~GGvI~Vv~NNq-~g~tT~ 440 (1021)
+.+|.++|.|+|+++|... .-+|++.|||+|. -...|-...+ +|| +++||.||+ ||+...
T Consensus 421 g~mG~glpaaiGa~la~p~---------~~vv~i~GDG~f~--m~~~EL~Ta~r~~lp------v~~vV~NN~~y~~i~~ 483 (572)
T PRK08979 421 GTMGFGLPAAMGVKFAMPD---------ETVVCVTGDGSIQ--MNIQELSTALQYDIP------VKIINLNNRFLGMVKQ 483 (572)
T ss_pred ccccchhhHHHhhhhhCCC---------CeEEEEEcchHhh--ccHHHHHHHHHcCCC------eEEEEEeCCccHHHHH
Confidence 5799999999999999642 4589999999995 5556655555 999 888888887 665321
Q ss_pred ---------CCCC--cccccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeeec
Q 001713 441 ---------PMSG--RSSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYR 498 (1021)
Q Consensus 441 ---------~~~~--rs~~~~sd~Aka~g~p~~~VdG~D~eAV~~a~~~A~e~rr~~~gPvlIe~vtYR 498 (1021)
.... ....++..+|++||+++++|+ +++++..+.+.|++ .-++|+|||+.+-+
T Consensus 484 ~q~~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~~v~--~~~eL~~al~~a~~---~~~~p~lIev~i~~ 547 (572)
T PRK08979 484 WQDMIYQGRHSHSYMDSVPDFAKIAEAYGHVGIRIS--DPDELESGLEKALA---MKDRLVFVDINVDE 547 (572)
T ss_pred HHHHHhCCcccccCCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh---cCCCcEEEEEEeCC
Confidence 0000 123578899999999999987 68888888887764 13789999998843
No 142
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.
Probab=98.32 E-value=1.1e-06 Score=106.04 Aligned_cols=110 Identities=17% Similarity=0.135 Sum_probs=83.6
Q ss_pred CCcccccceeehHHHHhHHhcCCCCCCCcEEEEEeCccccCCccHHHHHHHhc--CCCCCCcccEEEEEEcCC-cccccC
Q 001713 364 SHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS--ALPNYSIGGTIHIVVNNQ-VAFTTD 440 (1021)
Q Consensus 364 Shlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDgA~sGqG~v~EalnlA--~LP~y~~GGvI~Vv~NNq-~g~tT~ 440 (1021)
+.+|.++|.|+|++.|.. + . +|++.|||+| |..++|-..++ +|| +++||.||+ ||+-..
T Consensus 403 g~mG~glpaaiGa~lA~~---~------r-~v~i~GDG~f--~m~~~EL~Ta~r~~lp------v~~vV~NN~~y~~~~~ 464 (535)
T TIGR03394 403 AGMGFGVPAGIGAQCTSG---K------R-ILTLVGDGAF--QMTGWELGNCRRLGID------PIVILFNNASWEMLRV 464 (535)
T ss_pred chhhhHHHHHHHHHhCCC---C------C-eEEEEeChHH--HhHHHHHHHHHHcCCC------cEEEEEECCccceeeh
Confidence 569999999999999952 1 3 3779999999 57788887777 999 788887776 675431
Q ss_pred CC-----CCcccccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEee
Q 001713 441 PM-----SGRSSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVC 496 (1021)
Q Consensus 441 ~~-----~~rs~~~~sd~Aka~g~p~~~VdG~D~eAV~~a~~~A~e~rr~~~gPvlIe~vt 496 (1021)
.. ......++..+|++||++.++|+ +++++..+.++|++ ..++|+|||+.+
T Consensus 465 ~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~~---~~~~p~lIev~i 520 (535)
T TIGR03394 465 FQPESAFNDLDDWRFADMAAGMGGDGVRVR--TRAELAAALDKAFA---TRGRFQLIEAML 520 (535)
T ss_pred hccCCCcccCCCCCHHHHHHHcCCCceEeC--CHHHHHHHHHHHHh---cCCCeEEEEEEC
Confidence 11 01124678889999999999987 67888888887774 335689999986
No 143
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=98.32 E-value=2.1e-06 Score=104.03 Aligned_cols=109 Identities=16% Similarity=0.149 Sum_probs=82.8
Q ss_pred CCcccccceeehHHHHhHHhcCCCCCCCcEEEEEeCccccCCccHHHHHHHhc--CCCCCCcccEEEEEEcCC-cccc--
Q 001713 364 SHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS--ALPNYSIGGTIHIVVNNQ-VAFT-- 438 (1021)
Q Consensus 364 Shlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDgA~sGqG~v~EalnlA--~LP~y~~GGvI~Vv~NNq-~g~t-- 438 (1021)
+.+|..+|.|+|+++|. + .-+|++.|||+|. -...|-..++ +|| +++||.||+ |-..
T Consensus 417 gsmG~~lpaaiGaala~-----~-----~~vv~i~GDGsf~--m~~~EL~Ta~r~~l~------v~~vV~NN~~~~~~~~ 478 (554)
T TIGR03254 417 GVMGIGMGYAIAAAVET-----G-----KPVVALEGDSAFG--FSGMEVETICRYNLP------VCVVIFNNGGIYRGDD 478 (554)
T ss_pred CcCCchHHHHHHHHhcC-----C-----CcEEEEEcCchhc--ccHHHHHHHHHcCCC------EEEEEEeChhhhhhhh
Confidence 55999999999999983 2 3599999999994 6677766666 999 999999997 3111
Q ss_pred -----cCC--CCCcccccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEee
Q 001713 439 -----TDP--MSGRSSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVC 496 (1021)
Q Consensus 439 -----T~~--~~~rs~~~~sd~Aka~g~p~~~VdG~D~eAV~~a~~~A~e~rr~~~gPvlIe~vt 496 (1021)
... .+-....++..+|++||+++++|. +++++..+.++|+ +.++|+|||+.+
T Consensus 479 ~~~~~~~~~~~~~~~~~df~~la~a~G~~~~~v~--~~~el~~al~~a~----~~~~p~lIev~i 537 (554)
T TIGR03254 479 VNVVGADPAPTVLVHGARYDKMMKAFGGVGYNVT--TPDELKAALNEAL----ASGKPTLINAVI 537 (554)
T ss_pred hhhcCCCCCccccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHH----hCCCCEEEEEEE
Confidence 000 000123578899999999999995 6888888888876 347899999987
No 144
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=98.30 E-value=2.1e-06 Score=104.32 Aligned_cols=110 Identities=16% Similarity=0.162 Sum_probs=82.7
Q ss_pred CCcccccceeehHHHHhHHhcCCCCCCCcEEEEEeCccccCCccHHHHHHHhc--CCCCCCcccEEEEEEcCC-c--ccc
Q 001713 364 SHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS--ALPNYSIGGTIHIVVNNQ-V--AFT 438 (1021)
Q Consensus 364 Shlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDgA~sGqG~v~EalnlA--~LP~y~~GGvI~Vv~NNq-~--g~t 438 (1021)
+.+|.++|.|+|+++|. + .-+|++.|||+|. -.+.|-...+ +|| +++||.||+ | +..
T Consensus 424 gsmG~glpaaiGa~la~-----~-----~~vv~i~GDG~f~--m~~~EL~Ta~r~~lp------i~~vV~NN~~~~~~~~ 485 (569)
T PRK09259 424 GVMGIGMGYAIAAAVET-----G-----KPVVAIEGDSAFG--FSGMEVETICRYNLP------VTVVIFNNGGIYRGDD 485 (569)
T ss_pred ccccccHHHHHHHHhcC-----C-----CcEEEEecCcccc--ccHHHHHHHHHcCCC------EEEEEEeChhHHHHHH
Confidence 45999999999999983 2 3599999999995 6666655555 999 999999998 2 110
Q ss_pred ------cCCC--CCcccccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeee
Q 001713 439 ------TDPM--SGRSSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCY 497 (1021)
Q Consensus 439 ------T~~~--~~rs~~~~sd~Aka~g~p~~~VdG~D~eAV~~a~~~A~e~rr~~~gPvlIe~vtY 497 (1021)
.... .-....+.+.+|++||+++++|+ +++++..++++|++ .++|+|||+.+=
T Consensus 486 ~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~lIev~id 546 (569)
T PRK09259 486 VNLSGAGDPSPTVLVHHARYDKMMEAFGGVGYNVT--TPDELRHALTEAIA----SGKPTLINVVID 546 (569)
T ss_pred HHhhcCCCccccccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEEC
Confidence 0100 00124578899999999999996 68888888888863 578999999973
No 145
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=98.29 E-value=1.7e-06 Score=106.09 Aligned_cols=112 Identities=20% Similarity=0.191 Sum_probs=83.5
Q ss_pred CCcccccceeehHHHHhHHhcCCCCCCCcEEEEEeCccccCCccHHHHHHHhc--CCCCCCcccEEEEEEcCC-ccccc-
Q 001713 364 SHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS--ALPNYSIGGTIHIVVNNQ-VAFTT- 439 (1021)
Q Consensus 364 Shlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDgA~sGqG~v~EalnlA--~LP~y~~GGvI~Vv~NNq-~g~tT- 439 (1021)
+.+|.++|.|+|+++|... .-+|++.|||+|. -...|-...+ +|| +++||.||+ ||+-.
T Consensus 447 G~mG~glpaaiGa~la~p~---------~~Vv~i~GDG~f~--m~~~eL~Ta~~~~lp------v~ivV~NN~~~g~i~~ 509 (612)
T PRK07789 447 GTMGYAVPAAMGAKVGRPD---------KEVWAIDGDGCFQ--MTNQELATCAIEGIP------IKVALINNGNLGMVRQ 509 (612)
T ss_pred ccccchhhhHHhhhccCCC---------CcEEEEEcchhhh--ccHHHHHHHHHcCCC------eEEEEEECCchHHHHH
Confidence 5699999999999999642 4588999999995 4555555555 999 777777776 77531
Q ss_pred --------CCC--C-Cc---ccccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeee
Q 001713 440 --------DPM--S-GR---SSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCY 497 (1021)
Q Consensus 440 --------~~~--~-~r---s~~~~sd~Aka~g~p~~~VdG~D~eAV~~a~~~A~e~rr~~~gPvlIe~vtY 497 (1021)
... + .. ...++..+|++||+++++|+ +++++..+.+.|++. .++|+|||+.+-
T Consensus 510 ~q~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~V~--~~~eL~~al~~a~~~---~~~p~lIev~i~ 576 (612)
T PRK07789 510 WQTLFYEERYSNTDLHTHSHRIPDFVKLAEAYGCVGLRCE--REEDVDAVIEKARAI---NDRPVVIDFVVG 576 (612)
T ss_pred HHHHhhCCCcceeecCcCCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhc---CCCcEEEEEEEC
Confidence 000 0 00 12578899999999999996 688888888888753 268999999984
No 146
>TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of beta subunits, representing mostly pyruvate and 2-ketoisovalerate specific enzymes.
Probab=98.29 E-value=1.4e-06 Score=97.21 Aligned_cols=110 Identities=17% Similarity=0.131 Sum_probs=77.3
Q ss_pred cccccceeehHHHHhHHhcCCCCCCCcEEEEEeCccccCCccHHHHHHHhc--CCCCCCcccEEEEEEcCC-cccccCCC
Q 001713 366 LEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS--ALPNYSIGGTIHIVVNNQ-VAFTTDPM 442 (1021)
Q Consensus 366 lg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDgA~sGqG~v~EalnlA--~LP~y~~GGvI~Vv~NNq-~g~tT~~~ 442 (1021)
+|..+|+|+|+++|... .-+|++.|||++. .--..|..+.+ ++| +++||.||+ ||++.-..
T Consensus 55 mG~alPaAiGaklA~Pd---------~~VVai~GDG~f~-~mg~~eL~tA~r~nl~------I~vIVlNN~~yGmt~gQ~ 118 (287)
T TIGR02177 55 HGRALPVATGIKLANPH---------LKVIVVGGDGDLY-GIGGNHFVAAGRRNVD------ITVIVHDNQVYGLTKGQA 118 (287)
T ss_pred cccHHHHHHHHHHHCCC---------CcEEEEeCchHHH-hccHHHHHHHHHhCcC------eEEEEEECHHHHhhhccc
Confidence 59999999999999653 4689999999974 23356666666 999 999999998 68775211
Q ss_pred C--------Ccc----------cccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEee
Q 001713 443 S--------GRS----------SQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVC 496 (1021)
Q Consensus 443 ~--------~rs----------~~~~sd~Aka~g~p~~~VdG~D~eAV~~a~~~A~e~rr~~~gPvlIe~vt 496 (1021)
. ..+ .+....+|.++++.... ...+++++..++++|++ .+||+|||+.+
T Consensus 119 sp~t~~G~~~~~~~~g~~~~~~np~~~a~A~g~g~va~~-~~~~~~eL~~ai~~Al~----~~GpslIeV~~ 185 (287)
T TIGR02177 119 SPTLLKGVKTKSLPYPNIQDPVNPLLLAIALGYTFVARG-FSGDVAHLKEIIKEAIN----HKGYALVDILQ 185 (287)
T ss_pred ccCccCCcceeecccCccCCCCCHHHHHHhCCCCeEEEE-ecCCHHHHHHHHHHHHh----CCCCEEEEEeC
Confidence 0 000 11233456666655443 23689999999888884 58899999974
No 147
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=98.26 E-value=1e-06 Score=106.80 Aligned_cols=109 Identities=17% Similarity=0.111 Sum_probs=80.2
Q ss_pred CCcccccceeehHHHHhHHhcCCCCCCCcEEEEEeCccccCCccHHHHHHHhc--CCCCCCcccEEEEEEcCC-cccccC
Q 001713 364 SHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS--ALPNYSIGGTIHIVVNNQ-VAFTTD 440 (1021)
Q Consensus 364 Shlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDgA~sGqG~v~EalnlA--~LP~y~~GGvI~Vv~NNq-~g~tT~ 440 (1021)
+.+|..+|.|+|+++| . + .-+|++.|||+|. -...|-...+ +|| +++||.||+ ||+-..
T Consensus 425 ~~~G~~lpaaiGaala-~----~-----~~vv~i~GDGsf~--~~~~eL~Ta~r~~l~------i~ivVlNN~g~~~~~~ 486 (568)
T PRK07449 425 SGIDGLLSTAAGVARA-S----A-----KPTVALIGDLSFL--HDLNGLLLLKQVPAP------LTIVVVNNNGGGIFSL 486 (568)
T ss_pred cchhhHHHHHHHHHhc-C----C-----CCEEEEechHHhh--cCcHHHHhhcccCCC------eEEEEEECCCCccccC
Confidence 3488889999999998 3 1 3479999999996 3345555545 999 888888888 563211
Q ss_pred C---CC---------CcccccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEee
Q 001713 441 P---MS---------GRSSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVC 496 (1021)
Q Consensus 441 ~---~~---------~rs~~~~sd~Aka~g~p~~~VdG~D~eAV~~a~~~A~e~rr~~~gPvlIe~vt 496 (1021)
. .. .....++..+|++||++++.|+ +++++..+.+.|+ +.++|+|||+.+
T Consensus 487 ~~~~~~~~~~~~~~~~~~~~df~~lA~a~G~~~~~V~--~~~eL~~al~~a~----~~~~p~lIev~i 548 (568)
T PRK07449 487 LPQPEEEPVFERFFGTPHGVDFAHAAAMYGLEYHRPE--TWAELEEALADAL----PTPGLTVIEVKT 548 (568)
T ss_pred CCCCCCcchhhHhhcCCCCCCHHHHHHHcCCCccCCC--CHHHHHHHHHHHh----cCCCCEEEEEeC
Confidence 0 00 0123578889999999999885 6888888888876 357899999976
No 148
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=98.25 E-value=2.3e-06 Score=104.04 Aligned_cols=111 Identities=20% Similarity=0.219 Sum_probs=80.6
Q ss_pred CCcccccceeehHHHHhHHhcCCCCCCCcEEEEEeCccccCCccHHHHHHHhc--CCCCCCcccEEEEEEcCC-ccccc-
Q 001713 364 SHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS--ALPNYSIGGTIHIVVNNQ-VAFTT- 439 (1021)
Q Consensus 364 Shlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDgA~sGqG~v~EalnlA--~LP~y~~GGvI~Vv~NNq-~g~tT- 439 (1021)
+.+|.++|.|+|+++|... .-+|++.|||+|. -...|-.... +|| +++||.||+ |++-.
T Consensus 418 g~mG~glpaaiGa~lA~p~---------~~Vv~i~GDG~f~--m~~~eL~Ta~~~~l~------i~~vV~NN~~y~~i~~ 480 (566)
T PRK07282 418 GTMGFGIPAAIGAKIANPD---------KEVILFVGDGGFQ--MTNQELAILNIYKVP------IKVVMLNNHSLGMVRQ 480 (566)
T ss_pred ccccchhhHhheeheecCC---------CcEEEEEcchhhh--ccHHHHHHHHHhCCC------eEEEEEeCCCchHHHH
Confidence 6799999999999999642 3489999999995 5555544444 999 788877777 66522
Q ss_pred --------CCC-C-CcccccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeeec
Q 001713 440 --------DPM-S-GRSSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYR 498 (1021)
Q Consensus 440 --------~~~-~-~rs~~~~sd~Aka~g~p~~~VdG~D~eAV~~a~~~A~e~rr~~~gPvlIe~vtYR 498 (1021)
... . .....+++.+|++||+..++|. +++++..+.+ ++ .-++|+|||+.+-+
T Consensus 481 ~q~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~-~~----~~~~p~lIeV~v~~ 542 (566)
T PRK07282 481 WQESFYEGRTSESVFDTLPDFQLMAQAYGIKHYKFD--NPETLAQDLE-VI----TEDVPMLIEVDISR 542 (566)
T ss_pred HHHHHhCCCcccccCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHH-Hh----cCCCCEEEEEEeCC
Confidence 111 1 1124578999999999999996 5677766664 32 23789999998844
No 149
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=98.23 E-value=3.7e-06 Score=102.78 Aligned_cols=112 Identities=19% Similarity=0.186 Sum_probs=82.4
Q ss_pred CCcccccceeehHHHHhHHhcCCCCCCCcEEEEEeCccccCCccH-HHHHHHhc-------CCCCCCcccEEEEEEcCC-
Q 001713 364 SHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGV-VYETLHLS-------ALPNYSIGGTIHIVVNNQ- 434 (1021)
Q Consensus 364 Shlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDgA~sGqG~-v~EalnlA-------~LP~y~~GGvI~Vv~NNq- 434 (1021)
+.+|..+|.|+|+++|... .-+|++.|||+|. .. ..|-..++ +|| +++||.||+
T Consensus 415 g~mG~glpaaiGa~la~p~---------~~Vv~i~GDG~f~--m~~~~EL~Ta~r~~~~~~~lp------viivV~NN~~ 477 (597)
T PRK08273 415 ATMGPAVPYAIAAKFAHPD---------RPVIALVGDGAMQ--MNGMAELITVAKYWRQWSDPR------LIVLVLNNRD 477 (597)
T ss_pred ccccchHHHHHHHHHhCCC---------CcEEEEEcchhHh--ccchHHHHHHHHHhhcccCCC------EEEEEEeCCc
Confidence 5699999999999999642 4589999999995 33 34444333 589 899999987
Q ss_pred ccccc---------CCC--C-CcccccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeeec
Q 001713 435 VAFTT---------DPM--S-GRSSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYR 498 (1021)
Q Consensus 435 ~g~tT---------~~~--~-~rs~~~~sd~Aka~g~p~~~VdG~D~eAV~~a~~~A~e~rr~~~gPvlIe~vtYR 498 (1021)
||+-. +.. . .....+++.+|++||++.++|. +++++..+.+.|.+ .++|+|||+.+-+
T Consensus 478 ~~~i~~~q~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~~----~~~p~lIeV~~~~ 547 (597)
T PRK08273 478 LNQVTWEQRVMEGDPKFEASQDLPDVPYARFAELLGLKGIRVD--DPEQLGAAWDEALA----ADRPVVLEVKTDP 547 (597)
T ss_pred chHHHHHHHHhcCCCcccccccCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEeCC
Confidence 65421 100 0 0123568899999999999997 67888877777764 4889999999843
No 150
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=98.14 E-value=7.1e-06 Score=100.34 Aligned_cols=112 Identities=15% Similarity=0.129 Sum_probs=84.6
Q ss_pred CCcccccceeehHHHHhHHhcCCCCCCCcEEEEEeCccccCCccHHHHHHHhc--CCCCCCcccEEEEEEcCC-cccccC
Q 001713 364 SHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS--ALPNYSIGGTIHIVVNNQ-VAFTTD 440 (1021)
Q Consensus 364 Shlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDgA~sGqG~v~EalnlA--~LP~y~~GGvI~Vv~NNq-~g~tT~ 440 (1021)
+.+|..+|.|+|+++|... .-+|++.|||+|. -....|-.+.. ++| +++||.||+ ||++..
T Consensus 403 ~~mG~~~~~AiGa~~a~p~---------~~Vv~i~GDG~f~-~~g~~eL~tav~~~~~------i~~vVlnN~~~g~~~~ 466 (595)
T TIGR03336 403 LCMGASIGVASGLSKAGEK---------QRIVAFIGDSTFF-HTGIPGLINAVYNKAN------ITVVILDNRITAMTGH 466 (595)
T ss_pred eccCchHHHHhhhhhcCCC---------CCEEEEeccchhh-hcCHHHHHHHHHcCCC------eEEEEEcCcceeccCC
Confidence 6799999999999998642 3489999999996 22256666655 999 888888886 676642
Q ss_pred CCC---C-------cccccHHHHHhhcCccEEEEe-CCCHHHHHHHHHHHHHHHHccCCCEEEEEe
Q 001713 441 PMS---G-------RSSQYCTDVAKALDAPIFHVN-GDDMEAVAHVCELAAEWRQTFHSDVVVDLV 495 (1021)
Q Consensus 441 ~~~---~-------rs~~~~sd~Aka~g~p~~~Vd-G~D~eAV~~a~~~A~e~rr~~~gPvlIe~v 495 (1021)
... . ....++..+|+++|++.++|. -.|++++..+.++|++ ..+|++|++.
T Consensus 467 q~~~~~~~~~~~~~~~~~d~~~ia~a~G~~~~~v~~~~~l~~l~~al~~a~~----~~gp~li~v~ 528 (595)
T TIGR03336 467 QPNPGTGVTGMGEATKEISIEELCRASGVEFVEVVDPLNVKETIEVFKAALA----AEGVSVIIAK 528 (595)
T ss_pred CCCCCCCCCCCCCcCCCcCHHHHHHHcCCCEEEEeCcCCHHHHHHHHHHHHh----cCCCEEEEEc
Confidence 110 0 023578999999999999984 4677877888887774 4789999985
No 151
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=98.03 E-value=0.00027 Score=84.69 Aligned_cols=251 Identities=16% Similarity=0.151 Sum_probs=164.2
Q ss_pred cEEecCccchHHHHHHHHhhccCCCCcceEehhhhhhhHhhHHHHHHHHHhhhhhhhcCccceEEEeCccCCCCCc-CCc
Q 001713 699 FTVSNSSLSEFGVLGFELGYSMENPNSLVMWEAQFGDFANGAQVIFDQFVNSGESKWLRQSGLVVMLPHGYDGQGP-EHS 777 (1021)
Q Consensus 699 ~rV~nspLSE~~vlGfe~G~a~~g~~~lviwEaqFgDF~n~Aq~~iDqfi~s~~~kw~~~~~lV~~lPhG~~G~Gp-eHS 777 (1021)
.-++-=.++|--.+-.++|.|+.|-+.++ .+=.==+|.| .|-|+++. --+-.-+||++. |.-| .||
T Consensus 58 ~vy~e~s~NEkvA~e~a~GA~~~G~ral~---~mKhVGlNvA---sDpl~s~a--y~Gv~GGlviv~-----aDDpg~~S 124 (640)
T COG4231 58 DVYFEWSLNEKVALETAAGASYAGVRALV---TMKHVGLNVA---SDPLMSLA--YAGVTGGLVIVV-----ADDPGMHS 124 (640)
T ss_pred cEEEEecccHHHHHHHHHHhhhcCceeeE---Eecccccccc---hhhhhhhh--hcCccccEEEEE-----ccCCCccc
Confidence 35666689999999999999999999987 3333337888 88888753 223466888887 3333 577
Q ss_pred CchhhHhhhccCCCCCcccCCCchhhhcccccCeEEEecCCHHHHHHHHHHHHh--cCCCCcEEEEeeccccCCcccc--
Q 001713 778 SARLERFLQMSDDNPYVIPEMDSTLRTQIQECNWQIVNVTTPANYFHVLRRQIH--REFRKPLVVMSPKNLLRHKECK-- 853 (1021)
Q Consensus 778 s~r~Er~Lql~~e~~~~~~~ipg~~~~~~~~~Nl~Vv~pstpad~fhlLrrqi~--~~~~kPliv~~pK~Llr~~~~~-- 853 (1021)
|. .|- |-.+|. +..+|-|+.|++|..++.+.+.+.. +.++-|+|+.+-..+-.....+
T Consensus 125 Sq-neq-------dsr~y~----------~~a~iPvLeP~d~Qea~d~~~~afelSe~~~~pVilr~ttr~~h~~~~V~~ 186 (640)
T COG4231 125 SQ-NEQ-------DSRAYG----------KFALIPVLEPSDPQEAYDYVKYAFELSEKSGLPVILRTTTRVSHSRGDVEV 186 (640)
T ss_pred cc-chh-------HhHHHH----------HhcCceeecCCChHHHHHHHHHHHHHHHHhCCCEEEEEEeeeeccceeEEe
Confidence 76 331 111121 2245889999999999999999854 5679999998776554222111
Q ss_pred CC--cccccccCCCCCCCCCCCcceEeecCc-cc---------------------cccC-CCCCeEEEEeechhHHHHHH
Q 001713 854 SN--LSEFDDVQGHPGFDKQGTRFKRLIKDQ-NE---------------------HSDL-EEGIRRLILCSGKVYYELYE 908 (1021)
Q Consensus 854 s~--~~e~~~~~~~~~~~~~~~~f~~vi~~~-~~---------------------~~~~-~~g~~~~Iv~~Gk~~~~l~~ 908 (1021)
+. ...+. |.|..|.++++++..+-... .+ ..+. .+..++-|+|+|..|-.+.+
T Consensus 187 ~~~~~~~~~--~~~~~~~k~~~r~V~~p~~~~~~~~~~l~~k~~a~~~~~~~~~~n~v~~~~~~~lGII~~G~ay~yVke 264 (640)
T COG4231 187 GLNRRPIVE--PEDEFFIKDPGRYVRVPANALRHRHRKLLEKWEAAEEFINANPLNRVEGSDDAKLGIIASGIAYNYVKE 264 (640)
T ss_pred ccccCCCCc--cccccccCCccceeecCcccchhhHHHHHHHHHHHHHHHhhCcccccccCCCCceEEEecCccHHHHHH
Confidence 10 01111 11113455556554432111 00 0011 11245669999999999999
Q ss_pred HHHHcCCCcEEEEEecccCCCCHHHHHHHHHcCCCceEEEEecCCcccchHhhHHHHHHHHHHhhccCCCCcEEEEcCCC
Q 001713 909 ERKKHSASDIAICRVEQLCPFPYDLVQRELKRYPNAEVVWSQEEPMNMGAYTYIAPRLCTAMKAVDRGTMEDIKYVGRAP 988 (1021)
Q Consensus 909 a~~~~~~~~v~ii~le~L~Pfp~~~i~~~l~k~~~~~~vwvqEe~~n~G~~~~v~~~i~~~~~~l~~~~~~~~~~vgr~~ 988 (1021)
+.++++ .+..|.+|-.-+|||...|.+-++.-.++ ++|+|--. +|..++...+.. .+.++.+.|-..
T Consensus 265 Al~~lg-l~~~~lklg~~~Plp~~~i~~F~~g~~~v--lVVEE~~P------~iE~qv~~~l~~----~g~~v~v~GKd~ 331 (640)
T COG4231 265 ALEDLG-LDDELLKLGTPYPLPEQLIENFLKGLERV--LVVEEGEP------FIEEQVKALLYD----AGLPVEVHGKDE 331 (640)
T ss_pred HHHHcC-CCceeEEecCCcCCCHHHHHHHHhcCcEE--EEEecCCc------hHHHHHHHHHHh----cCCceEeecccc
Confidence 999886 55669999999999999999999877766 88866432 566666555533 246788888876
Q ss_pred CcCCCcc
Q 001713 989 SAASATG 995 (1021)
Q Consensus 989 ~~~pa~g 995 (1021)
.--|..|
T Consensus 332 gllP~~G 338 (640)
T COG4231 332 GLLPMEG 338 (640)
T ss_pred cccCccc
Confidence 5566666
No 152
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=97.73 E-value=6.2e-05 Score=101.61 Aligned_cols=113 Identities=19% Similarity=0.128 Sum_probs=83.1
Q ss_pred cccCCccc--ccceeehHHHHhHHhcCCCCCCCcEEEEEeCccccCCccHHHHHHHhc----CCCCCCcccEEEEEEcCC
Q 001713 361 ANPSHLEA--VDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS----ALPNYSIGGTIHIVVNNQ 434 (1021)
Q Consensus 361 ~npShlg~--~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDgA~sGqG~v~EalnlA----~LP~y~~GGvI~Vv~NNq 434 (1021)
.|=+.+|. .+|.|+|++.|. + .-++|+.|||+|. -...|-..++ +|| +++||.||+
T Consensus 756 ~~~G~mG~~G~lpaAIGaala~-----~-----r~Vv~i~GDGsF~--m~~~EL~Ta~r~~~~lp------i~iVV~NN~ 817 (1655)
T PLN02980 756 GNRGASGIDGLLSTAIGFAVGC-----N-----KRVLCVVGDISFL--HDTNGLSILSQRIARKP------MTILVINNH 817 (1655)
T ss_pred ecCCccchhhhHHHHHHHhhcC-----C-----CCEEEEEehHHHH--hhhhHHHHhhcccCCCC------EEEEEEeCC
Confidence 34455676 699999999885 1 3489999999995 6666666654 689 888888888
Q ss_pred c-ccccC-C-----C-C---C----cccccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeee
Q 001713 435 V-AFTTD-P-----M-S---G----RSSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCY 497 (1021)
Q Consensus 435 ~-g~tT~-~-----~-~---~----rs~~~~sd~Aka~g~p~~~VdG~D~eAV~~a~~~A~e~rr~~~gPvlIe~vtY 497 (1021)
- |+-.. + . . . ....++..+|++||+++++|+ +++++..|.+.|. +.++|+|||+.|-
T Consensus 818 gggi~~~l~~~~~~~~~~~~~~~~~~~~~df~~lA~a~G~~~~rV~--~~~eL~~aL~~a~----~~~~p~lIEV~t~ 889 (1655)
T PLN02980 818 GGAIFSLLPIAKRTEPRVLNQYFYTSHDISIENLCLAHGVRHLHVG--TKSELEDALFTSQ----VEQMDCVVEVESS 889 (1655)
T ss_pred CcHhhhcCccCCCCcchhHHHHhcCCCCCCHHHHHHHcCCceeecC--CHHHHHHHHHHhh----ccCCCEEEEEecC
Confidence 4 44321 0 0 0 0 123578899999999999998 6788877776666 4588999999993
No 153
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
Probab=97.72 E-value=0.0011 Score=86.87 Aligned_cols=217 Identities=13% Similarity=0.125 Sum_probs=127.0
Q ss_pred ccchHHHHHHHHhhccCCCCcceEehhhhhhhHhhHHHHHHHHHhhhhhhh-cCccceEEEeCc-cCCCC----CcCCcC
Q 001713 705 SLSEFGVLGFELGYSMENPNSLVMWEAQFGDFANGAQVIFDQFVNSGESKW-LRQSGLVVMLPH-GYDGQ----GPEHSS 778 (1021)
Q Consensus 705 pLSE~~vlGfe~G~a~~g~~~lviwEaqFgDF~n~Aq~~iDqfi~s~~~kw-~~~~~lV~~lPh-G~~G~----GpeHSs 778 (1021)
.=||.+.++..+|++.+|-+..+ +-= ..|---++-++ +++ +...|+||-+.. ++.+. .+.||.
T Consensus 57 ~EsE~~A~~av~GA~~aGara~T---~TS---s~GL~LM~e~l-----~~~ag~~~P~Vi~va~R~~~~~~~~i~~dh~D 125 (1165)
T TIGR02176 57 MQSEAGAAGAVHGALQTGALTTT---FTA---SQGLLLMIPNM-----YKIAGELLPCVFHVSARAIAAHALSIFGDHQD 125 (1165)
T ss_pred ccchHHHHHHHHhHhhcCCCEEE---ecC---hhHHHHHHHHH-----HHHHhccCCEEEEEecCCCCCCCCccCCCchH
Confidence 34899999999999999988776 111 11111112222 122 236899998864 44322 345655
Q ss_pred chhhHhhhccCCCCCcccCCCchhhhcccccCeEEEecCCHHHHHHHHHHHHh--cCCCCcEEEEeeccccCCccccCCc
Q 001713 779 ARLERFLQMSDDNPYVIPEMDSTLRTQIQECNWQIVNVTTPANYFHVLRRQIH--REFRKPLVVMSPKNLLRHKECKSNL 856 (1021)
Q Consensus 779 ~r~Er~Lql~~e~~~~~~~ipg~~~~~~~~~Nl~Vv~pstpad~fhlLrrqi~--~~~~kPliv~~pK~Llr~~~~~s~~ 856 (1021)
. .+.++.+|.|+.|+|+.+.+++-..+.. ..++.|+|+|..-..+.|......+
T Consensus 126 v------------------------~~~R~~G~ivl~s~svQEa~D~al~A~~lAe~~~~Pvi~~~Dgf~tsh~~~~v~~ 181 (1165)
T TIGR02176 126 V------------------------MAARQTGFAMLASSSVQEVMDLALVAHLATIEARVPFMHFFDGFRTSHEIQKIEV 181 (1165)
T ss_pred H------------------------HHhhcCCeEEEeCCCHHHHHHHHHHHHHHHHhcCCCEEEEecCceeccccccccC
Confidence 4 1223457999999999999998777643 3478999999886544443211100
Q ss_pred ------ccccc------------cCCCCCCCC----CCCcceE-------------eec----C----ccc-----cccC
Q 001713 857 ------SEFDD------------VQGHPGFDK----QGTRFKR-------------LIK----D----QNE-----HSDL 888 (1021)
Q Consensus 857 ------~e~~~------------~~~~~~~~~----~~~~f~~-------------vi~----~----~~~-----~~~~ 888 (1021)
.++.. .|++|.... |+..|+. ++. . .+. ...-
T Consensus 182 ~~~~~v~~~~~~~~~~~~~~~~l~~~~p~~~G~~~~~~~~~~~~e~~~~~~~~~~~~v~~~~~k~~~~~gr~y~~~e~yg 261 (1165)
T TIGR02176 182 LDYEDMASLVNQELVAAFRKRSMNPEHPHVRGTAQNPDIYFQGREAVNPYYLAVPGIVQKYMDKIAKLTGRSYHLFDYYG 261 (1165)
T ss_pred CCHHHHHhhcChhhcccccccccCCCCCceeCCCCCcchhhhhHHHHHHHHhhhHHHHHHHHHHHHHHhCCccCcceecC
Confidence 00100 011111000 0011100 000 0 000 0011
Q ss_pred CCCCeEEEEeechhHHHHHHHHHHc--CCCcEEEEEecccCCCCHHHHHHHHHcCCCceEEEEecCCcccch
Q 001713 889 EEGIRRLILCSGKVYYELYEERKKH--SASDIAICRVEQLCPFPYDLVQRELKRYPNAEVVWSQEEPMNMGA 958 (1021)
Q Consensus 889 ~~g~~~~Iv~~Gk~~~~l~~a~~~~--~~~~v~ii~le~L~Pfp~~~i~~~l~k~~~~~~vwvqEe~~n~G~ 958 (1021)
.+..+.|||++|.+...+.++.+.+ ++.+|-+|+++.+.|||.+.|.+.|.+.-+ .|++++ -....|+
T Consensus 262 ~~dAe~ViV~~GS~~~~~~eav~~Lr~~G~kVGli~vr~~rPFp~e~l~~aLp~svK-~I~Vle-r~~~~g~ 331 (1165)
T TIGR02176 262 APDAERVIIAMGSVAETIEETVDYLNAKGEKVGLLKVRLYRPFSAETFFAALPKSVK-RIAVLD-RTKEPGA 331 (1165)
T ss_pred CCCCCEEEEEeCCCHHHHHHHHHHHHhcCCceeEEEEeEeCCCCHHHHHHHHHhcCC-EEEEEE-CCCCCCc
Confidence 2457899999999988887776554 578999999999999999999999964433 236665 4455553
No 154
>cd06586 TPP_enzyme_PYR Pyrimidine (PYR) binding domain of thiamine pyrophosphate (TPP)-dependent enzymes. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this group. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. In the case of 2-oxoisovalerate dehydrogenase (2OXO), sulfopyruvate deca
Probab=97.70 E-value=0.00021 Score=71.38 Aligned_cols=116 Identities=16% Similarity=0.183 Sum_probs=83.7
Q ss_pred ccEEecCccchHHHHHHHHhhccCCCCcceEehhhhhhhHhhHHHHHHHHHhhhhhhhcCccceEEEeCc-cCC--CCCc
Q 001713 698 MFTVSNSSLSEFGVLGFELGYSMENPNSLVMWEAQFGDFANGAQVIFDQFVNSGESKWLRQSGLVVMLPH-GYD--GQGP 774 (1021)
Q Consensus 698 ~~rV~nspLSE~~vlGfe~G~a~~g~~~lviwEaqFgDF~n~Aq~~iDqfi~s~~~kw~~~~~lV~~lPh-G~~--G~Gp 774 (1021)
+.+.++.+.+|.+.++++.||+..+.++++ ..++|.|+..+ ++++.. -|....|++++..+ |.. +.+.
T Consensus 34 ~~~~~~~~~~E~~a~~~A~G~a~~~~~~v~--~~~~gpg~~~~---~~~l~~----a~~~~~Pvl~i~~~~~~~~~~~~~ 104 (154)
T cd06586 34 DKRIIDTVIHELGAAGAAAGYARAGGPPVV--IVTSGTGLLNA---INGLAD----AAAEHLPVVFLIGARGISAQAKQT 104 (154)
T ss_pred CCceEEeeCCHHHHHHHHHHHHHhhCCEEE--EEcCCCcHHHH---HHHHHH----HHhcCCCEEEEeCCCChhhhccCc
Confidence 457889999999999999999999877766 78999999888 888774 24456999999865 543 4444
Q ss_pred CCcCchhhHhhhccCCCCCcccCCCchhhhcccccCeEEEecCCHHHHHHHHHHHHhc--CCCCcEEEEeec
Q 001713 775 EHSSARLERFLQMSDDNPYVIPEMDSTLRTQIQECNWQIVNVTTPANYFHVLRRQIHR--EFRKPLVVMSPK 844 (1021)
Q Consensus 775 eHSs~r~Er~Lql~~e~~~~~~~ipg~~~~~~~~~Nl~Vv~pstpad~fhlLrrqi~~--~~~kPliv~~pK 844 (1021)
.|+.. ...+ +..+++ +.+..| ++.+....|+++++. ..+.|+++..|+
T Consensus 105 ~q~~~-~~~~----------~~~~~~----------~~~~~~-~~~~~~~~~~~a~~~a~~~~gPv~l~ip~ 154 (154)
T cd06586 105 FQSMF-DLGM----------YRSIPE----------ANISSP-SPAELPAGIDHAIRTAYASQGPVVVRLPR 154 (154)
T ss_pred ccccC-HHHH----------HHHhhh----------eEEEeC-CHHHHHHHHHHHHHHHhcCCCCEEEEccC
Confidence 44444 4443 335554 777654 556777777777762 237799998764
No 155
>COG2609 AceE Pyruvate dehydrogenase complex, dehydrogenase (E1) component [Energy production and conversion]
Probab=97.54 E-value=0.092 Score=64.05 Aligned_cols=64 Identities=17% Similarity=0.185 Sum_probs=47.6
Q ss_pred eeehHHHHhHHhcCC--CCCCCcEEEEEeCccccCCccHHHHHHHhc---CCCCCCcccEEEEEEcCCcccccCC
Q 001713 372 VVIGKTRAKQYYSND--MDRTKNMAVLIHGDGSFAGQGVVYETLHLS---ALPNYSIGGTIHIVVNNQVAFTTDP 441 (1021)
Q Consensus 372 vA~G~A~A~q~~~~d--~~~~~~v~v~~~GDgA~sGqG~v~EalnlA---~LP~y~~GGvI~Vv~NNq~g~tT~~ 441 (1021)
.|+=.|+-.++.... .+..+.-++||.|||.+. ++...+++.+| +|.| +||||.-|.--...|.
T Consensus 200 ~aiyqArf~kYL~~RGl~~~~~~~v~afLGDgEmD-Epes~gAi~~A~re~LdN-----lifVincNlQrLDgpV 268 (887)
T COG2609 200 QAIYQARFLKYLEARGLKDTSDQKVWAFLGDGEMD-EPESRGAITEAAREKLDN-----LIFVINCNLQRLDGPV 268 (887)
T ss_pred HHHHHHHHHHHHHhcCCcCCCCCeEEEEecCcccC-CchhhHHHHHHHHhcCCc-----eEEEEecchhhcCCcc
Confidence 333344444543322 234567899999999998 99999999999 9998 9999998876665554
No 156
>KOG1185 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=97.54 E-value=0.00046 Score=80.27 Aligned_cols=109 Identities=23% Similarity=0.273 Sum_probs=78.8
Q ss_pred eeehHHHHhHHhcCCCCCCCcEEEEEeCccccCCccHHHHHHHhcCCCCCCcccEEEEEEcC-C-cccccCCCCCc----
Q 001713 372 VVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNN-Q-VAFTTDPMSGR---- 445 (1021)
Q Consensus 372 vA~G~A~A~q~~~~d~~~~~~v~v~~~GDgA~sGqG~v~EalnlA~LP~y~~GGvI~Vv~NN-q-~g~tT~~~~~r---- 445 (1021)
|..|.|.|.+.-..+ .-++|+.||+||.=-++-.||+---+|| +|.||.|| + ||+.+....+-
T Consensus 434 VG~Gfalaaa~~~P~-----~~V~~veGDsaFGfSaME~ET~vR~~Lp------vv~vV~NN~Giyg~d~~~~~~I~e~~ 502 (571)
T KOG1185|consen 434 VGLGFALAAALAAPD-----RKVVCVEGDSAFGFSAMELETFVRYKLP------VVIVVGNNNGIYGLDDDGWKQISEQD 502 (571)
T ss_pred cchhHHHHHHhhCCC-----CeEEEEecCcccCcchhhHHHHHHhcCC------eEEEEecCCcccccCcccHHHHhhcC
Confidence 344444444443333 6799999999985467888888888999 88888866 4 46665322111
Q ss_pred -----------ccccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEee
Q 001713 446 -----------SSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVC 496 (1021)
Q Consensus 446 -----------s~~~~sd~Aka~g~p~~~VdG~D~eAV~~a~~~A~e~rr~~~gPvlIe~vt 496 (1021)
.....-.++|++|..++.|+ .++++..+++.|. |...+|++|.+.-
T Consensus 503 ~~~~~p~~~l~~~~rY~~v~ka~G~kG~~v~--t~~el~~~l~~a~---q~~~~psvINVlI 559 (571)
T KOG1185|consen 503 PTLDLPPTALLANTRYDKVAKAFGGKGYFVS--TVEELLAALQQAC---QDTDKPSVINVLI 559 (571)
T ss_pred cccCCCcccccccccHHHHHHHcCCCceeeC--CHHHHHHHHHHHH---hcCCCCeEEEEEe
Confidence 11234568999999999999 7899999998887 4667999999864
No 157
>COG0674 PorA Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit [Energy production and conversion]
Probab=97.51 E-value=0.0043 Score=71.96 Aligned_cols=203 Identities=16% Similarity=0.180 Sum_probs=124.1
Q ss_pred ccchHHHHHHHHhhccCCCCcceEehhhhhhhHhhHHHHHHHHHhhhhhhh-cCccceEEEeCc-cC--CCC--CcCCcC
Q 001713 705 SLSEFGVLGFELGYSMENPNSLVMWEAQFGDFANGAQVIFDQFVNSGESKW-LRQSGLVVMLPH-GY--DGQ--GPEHSS 778 (1021)
Q Consensus 705 pLSE~~vlGfe~G~a~~g~~~lviwEaqFgDF~n~Aq~~iDqfi~s~~~kw-~~~~~lV~~lPh-G~--~G~--GpeHSs 778 (1021)
.=||.+.++..+|.+++|-|..+ +..|.=+-.. .-.-.++ +...|+|+.+.. +. .|. -++||.
T Consensus 53 ~EsE~~a~s~v~GA~~aGar~~T---aTSg~Gl~Lm--------~E~l~~a~~~~~P~Vi~~~~R~~ps~g~p~~~dq~D 121 (365)
T COG0674 53 MESEIGAISAVIGASYAGARAFT---ATSGQGLLLM--------AEALGLAAGTETPLVIVVAQRPLPSTGLPIKGDQSD 121 (365)
T ss_pred eccHHHHHHHHHHHHhhCcceEe---ecCCccHHHH--------HHHHHHHHhccCCeEEEEeccCcCCCcccccccHHH
Confidence 34899999999999999999988 5555422111 1111233 346899999876 44 233 345655
Q ss_pred chhhHhhhccCCCCCcccCCCchhhhcccccCeEEEecCCHHHHHHHHHHHHh--cCCCCcEEEEeeccccCCcccc-C-
Q 001713 779 ARLERFLQMSDDNPYVIPEMDSTLRTQIQECNWQIVNVTTPANYFHVLRRQIH--REFRKPLVVMSPKNLLRHKECK-S- 854 (1021)
Q Consensus 779 ~r~Er~Lql~~e~~~~~~~ipg~~~~~~~~~Nl~Vv~pstpad~fhlLrrqi~--~~~~kPliv~~pK~Llr~~~~~-s- 854 (1021)
.-..|+ .+|.+++-+|..++|.+-..+.. .+++-|++++..+.+.-|.... .
T Consensus 122 ~~~~r~------------------------~g~~~~~~~s~qEa~d~t~~Af~iAe~~~~Pvi~~~D~~~~~h~~~~v~~ 177 (365)
T COG0674 122 LMAARD------------------------TGFPILVSASVQEAFDLTLLAFNIAEKVLTPVIVLLDGFLASHEYEKIEL 177 (365)
T ss_pred HHHHHc------------------------cCceEEeeccHHHHHHHHHHHHHHHHHhcCCEEEeeccchhcCceeeeec
Confidence 522221 23667777799999998777654 3479999999998887765221 1
Q ss_pred --------Cccccccc-CCCCC----CC---CCCCcceEeecCc-----------------ccc--c------cC-CCCC
Q 001713 855 --------NLSEFDDV-QGHPG----FD---KQGTRFKRLIKDQ-----------------NEH--S------DL-EEGI 892 (1021)
Q Consensus 855 --------~~~e~~~~-~~~~~----~~---~~~~~f~~vi~~~-----------------~~~--~------~~-~~g~ 892 (1021)
.+.++... ..+|. +| .|...+...-.+. .+. + .. -+..
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~~r~~~k~~~~~~~~~~~~~~~g~~DA 257 (365)
T COG0674 178 LEQDLPDEEIPDYEPYTALDPSPPVLPGTEAVPDAYVTGFEHDNAGYPAEDDVIKRALRKINELTGREYEPFLYYGYEDA 257 (365)
T ss_pred CccccccccccccCcccccCCCCCCcCCCCCCCceEEeeeeccccccccchHHHHHHHHHHHHHhcCCCccceeecCCCc
Confidence 11111100 00110 00 0000111100000 000 0 00 1567
Q ss_pred eEEEEeechhHHHHHHHHHHc---CCCcEEEEEecccCCCCHHHHHHHHHcCC
Q 001713 893 RRLILCSGKVYYELYEERKKH---SASDIAICRVEQLCPFPYDLVQRELKRYP 942 (1021)
Q Consensus 893 ~~~Iv~~Gk~~~~l~~a~~~~---~~~~v~ii~le~L~Pfp~~~i~~~l~k~~ 942 (1021)
+++|||+|.....+.++...+ ++++|.++++|.+.|||.+.|.+.++++.
T Consensus 258 e~viV~~Gss~~~~~~a~~~~~~~~g~kvg~l~vr~~rPFp~~~i~~~l~~~~ 310 (365)
T COG0674 258 EIVIVAMGSSKGSTAEAVVDLLRDKGEKVGLLKVRTLRPFPAEEIREVLPKTN 310 (365)
T ss_pred CEEEEEeccchHhHHHHHHHHHHhcCceEEEEEEEEeCCCCHHHHHHHhcccc
Confidence 899999998777777765543 46789999999999999999999999987
No 158
>KOG4166 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=97.32 E-value=0.00046 Score=78.84 Aligned_cols=114 Identities=18% Similarity=0.214 Sum_probs=87.7
Q ss_pred CCcccccceeehHHHHhHHhcCCCCCCCcEEEEEeCccccCCccHHHHHHHhcCCCCCCcccEEEEEEcCC-cccccCCC
Q 001713 364 SHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQ-VAFTTDPM 442 (1021)
Q Consensus 364 Shlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDgA~sGqG~v~EalnlA~LP~y~~GGvI~Vv~NNq-~g~tT~~~ 442 (1021)
+.+|.++|.|+|+.-|..+ .++|=+-|||+|+-.+.-..+...+++| +-.++-||+ .|+-|..+
T Consensus 524 GtMGfGLPAAIGAsVA~P~---------~iViDIDGDaSF~Mt~~ELat~rq~~~P------VKiLiLNNeeqGMVtQWq 588 (675)
T KOG4166|consen 524 GTMGFGLPAAIGASVANPD---------AIVIDIDGDASFIMTVQELATIRQENLP------VKILILNNEEQGMVTQWQ 588 (675)
T ss_pred cccccCcchhhcccccCcc---------cEEEeccCCceeeeehHhhhhhhhcCCc------eEEEEecchhhhhHHHHH
Confidence 4589999999999998764 7999999999998444444455555999 888888998 58877421
Q ss_pred C----------CcccccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeeec
Q 001713 443 S----------GRSSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYR 498 (1021)
Q Consensus 443 ~----------~rs~~~~sd~Aka~g~p~~~VdG~D~eAV~~a~~~A~e~rr~~~gPvlIe~vtYR 498 (1021)
+ ..-.+++..+|.+.|++..+|.-. +.+.+.+++-+ ..+||+|+|+.|-.
T Consensus 589 ~lFYe~rysHThQ~nPnf~klA~AmGikalRV~K~--edL~~k~kefl----sTkGPvLleV~v~~ 648 (675)
T KOG4166|consen 589 DLFYEARYSHTHQENPNFLKLAAAMGIKALRVTKK--EDLREKIKEFL----STKGPVLLEVIVPH 648 (675)
T ss_pred HHHHHhhhccccccCccHHHHHHhcCCchheeehH--HHHHHHHHHHh----CCCCCeEEEEEccC
Confidence 1 122478889999999999999743 66666776666 57999999998843
No 159
>COG3961 Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes [Carbohydrate transport and metabolism / Coenzyme metabolism / General function prediction only]
Probab=97.22 E-value=0.00088 Score=78.86 Aligned_cols=116 Identities=18% Similarity=0.141 Sum_probs=79.5
Q ss_pred CCcccccceeehHHHHhHHhcCCCCCCCcEEEEEeCccccCCccHHHHHHHhc--CCCCCCcccEEEEEEcCCcccccCC
Q 001713 364 SHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS--ALPNYSIGGTIHIVVNNQVAFTTDP 441 (1021)
Q Consensus 364 Shlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDgA~sGqG~v~EalnlA--~LP~y~~GGvI~Vv~NNq~g~tT~~ 441 (1021)
+++|..+|.++|+++|.++ +-+|+|+||||+ |-.++|-=.|- +||- +|||+.|++|-+-.-.
T Consensus 411 GSIG~t~pAalGa~~A~~d---------rR~IL~iGDGs~--QlTvQEiStmiR~gl~p-----~ifvlNN~GYTIEr~I 474 (557)
T COG3961 411 GSIGYTLPAALGAALAAPD---------RRVILFIGDGSL--QLTVQEISTMIRWGLKP-----IIFVLNNDGYTIERAI 474 (557)
T ss_pred hhcccccHhhhhhhhcCCC---------ccEEEEEcCchh--hhhHHHHHHHHHcCCCc-----EEEEEcCCCcEEEehh
Confidence 5799999999999999987 459999999998 79999988888 7773 7888888888665432
Q ss_pred CCC------cccccHHHHHhhcCccEEEE--eCCCHHHHHHHHHHHHHHHHccCCCEEEEEeeec
Q 001713 442 MSG------RSSQYCTDVAKALDAPIFHV--NGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYR 498 (1021)
Q Consensus 442 ~~~------rs~~~~sd~Aka~g~p~~~V--dG~D~eAV~~a~~~A~e~rr~~~gPvlIe~vtYR 498 (1021)
+.. -.+-+.+.+-++||+--.+. ...-.+....+.+.+.+ ..+++.+||++.-+
T Consensus 475 Hg~~~~YNdI~~Wd~~~l~~afg~~~~~~~~~~~~~~~l~~~~~~~~~---~~~~i~lIEv~lp~ 536 (557)
T COG3961 475 HGPTAPYNDIQSWDYTALPEAFGAKNGEAKFRATTGEELALALDVAFA---NNDRIRLIEVMLPV 536 (557)
T ss_pred cCCCcCcccccccchhhhhhhcCCCCceEEEeecChHHHHHHHHHHhc---CCCceEEEEEecCc
Confidence 221 11345677888888653222 11223344444444432 44578999998643
No 160
>PRK13029 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=97.14 E-value=0.013 Score=76.06 Aligned_cols=248 Identities=12% Similarity=0.046 Sum_probs=146.5
Q ss_pred EecCccchHHH---------HHHHHhhccCCCCcceEehhhhhhhHhhHHHHHHHHHhhhhhhhcCccceEEEeCccCCC
Q 001713 701 VSNSSLSEFGV---------LGFELGYSMENPNSLVMWEAQFGDFANGAQVIFDQFVNSGESKWLRQSGLVVMLPHGYDG 771 (1021)
Q Consensus 701 V~nspLSE~~v---------lGfe~G~a~~g~~~lviwEaqFgDF~n~Aq~~iDqfi~s~~~kw~~~~~lV~~lPhG~~G 771 (1021)
++-=.+.|.-. +....|.+..|-+.++ .+=+-=+|.| -|-|.+..-+--+..-|+|++. |
T Consensus 87 ~fe~~~NEklAatav~Gsq~~e~~~~a~~dGv~~lw---ygK~pGvn~a---aD~l~h~n~~gt~~~GGvv~v~-----g 155 (1186)
T PRK13029 87 VFQPGVNEELAATAVWGSQQLELDPGAKRDGVFGMW---YGKGPGVDRS---GDALRHANLAGTSPLGGVLVLA-----G 155 (1186)
T ss_pred EEeecCCHHHHHHHhhhhhhcccccceeeccceEEE---ecCcCCcccc---hhHHHHhhccccCCCCcEEEEE-----e
Confidence 33445666666 5566788888888854 3444447788 7777754322333456787776 3
Q ss_pred CCc-CCcCchhhHhhhccCCCCCcccCCCchhhhcccccCeEEEecCCHHHHHHHHHHHH--hcCCCCcEEEEeeccccC
Q 001713 772 QGP-EHSSARLERFLQMSDDNPYVIPEMDSTLRTQIQECNWQIVNVTTPANYFHVLRRQI--HREFRKPLVVMSPKNLLR 848 (1021)
Q Consensus 772 ~Gp-eHSs~r~Er~Lql~~e~~~~~~~ipg~~~~~~~~~Nl~Vv~pstpad~fhlLrrqi--~~~~~kPliv~~pK~Llr 848 (1021)
.-| -|||. .|-= -+...+..+|-|+.|+++.+++.+-+.+. .+.+.-||++-.-..+..
T Consensus 156 DDpg~~SSq-~eqd-----------------Sr~~~~~a~iPvl~Ps~~qE~~d~~~~a~~lSr~~g~~V~lr~~t~v~~ 217 (1186)
T PRK13029 156 DDHGAKSSS-VAHQ-----------------SDHTFIAWGIPVLYPASVQDYLDYGLHGWAMSRYSGLWVGMKCVTEVVE 217 (1186)
T ss_pred cCCCCcccc-CHHH-----------------HHHHHHHcCCceeCCCCHHHHHHHHHHHHHHHHHhCCCEEEEEeeeeee
Confidence 322 36666 3320 01112223578999999999999888764 466788999966555442
Q ss_pred CccccCCcccccccCCCC-CCCCCCC-c-ceEeec-----------------------CccccccCCCCCeEEEEeechh
Q 001713 849 HKECKSNLSEFDDVQGHP-GFDKQGT-R-FKRLIK-----------------------DQNEHSDLEEGIRRLILCSGKV 902 (1021)
Q Consensus 849 ~~~~~s~~~e~~~~~~~~-~~~~~~~-~-f~~vi~-----------------------~~~~~~~~~~g~~~~Iv~~Gk~ 902 (1021)
....+ .+++....+.-| .|.+|.+ . .+.+.. +++.........++-|||+|+.
T Consensus 218 s~~~V-~~~~~r~~~~~p~~f~~~~~g~~~r~~~~p~~~e~~~~~~kl~a~~a~a~~n~ln~~~~~~~~~~~GIItsG~~ 296 (1186)
T PRK13029 218 STASV-DLDPDRVDIVLPDDFVLPPGGLHIRWPDDPLAQEERMLEFKWYAALAYVRANRLNRLVIDGPNPRLGIIAAGKA 296 (1186)
T ss_pred cceee-ecCCcccccCCcccccCCccccccccCCCcHHHHHHHHHHHHHHHHHHHHhCCCCEEeccCCCCCEEEEecCcc
Confidence 22211 111111000012 2444331 1 111110 0110000122467899999999
Q ss_pred HHHHHHHHHHcCCC-------cEEEEEecccCCCCHHHHHHHHHcCCCceEEEEecCCcccchHhhHHHHHHHHHHhhcc
Q 001713 903 YYELYEERKKHSAS-------DIAICRVEQLCPFPYDLVQRELKRYPNAEVVWSQEEPMNMGAYTYIAPRLCTAMKAVDR 975 (1021)
Q Consensus 903 ~~~l~~a~~~~~~~-------~v~ii~le~L~Pfp~~~i~~~l~k~~~~~~vwvqEe~~n~G~~~~v~~~i~~~~~~l~~ 975 (1021)
|.++.++.+.++.. .+.|..|-..+|||.+.|.+-++....+ ++|+|- . .+|...|.+.+....
T Consensus 297 y~~v~eAl~~lgl~~~~~~~~gi~ilKvgm~~PL~~~~i~~Fa~g~d~v--lVVEE~-~-----p~iE~qlk~~l~~~~- 367 (1186)
T PRK13029 297 YLDVRQALRDLGLDDATCAALGIRLLKVGCVWPLDPQSVREFAQGLEEV--LVVEEK-R-----AVIEYQLKEELYNWR- 367 (1186)
T ss_pred HHHHHHHHHHcCCChhhccccCCCEEEeCCCCCCCHHHHHHHHhcCCEE--EEEecC-c-----hHHHHHHHHHHhhcc-
Confidence 99999999987643 3899999999999999999999988755 777653 2 356666665553322
Q ss_pred CCCCcEEEEcCCC
Q 001713 976 GTMEDIKYVGRAP 988 (1021)
Q Consensus 976 ~~~~~~~~vgr~~ 988 (1021)
...+++.+|+.+
T Consensus 368 -~~~rp~v~GK~~ 379 (1186)
T PRK13029 368 -EDVRPAIFGKFD 379 (1186)
T ss_pred -CCcCCeeEeccc
Confidence 122357788865
No 161
>PRK13030 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=97.11 E-value=0.0079 Score=78.23 Aligned_cols=261 Identities=15% Similarity=0.116 Sum_probs=150.6
Q ss_pred EEecCccchHHHHHHHHhhccCCCCcce-------EehhhhhhhHhhHHHHHHHHHhhhhhhhcC--ccceEEEeCccCC
Q 001713 700 TVSNSSLSEFGVLGFELGYSMENPNSLV-------MWEAQFGDFANGAQVIFDQFVNSGESKWLR--QSGLVVMLPHGYD 770 (1021)
Q Consensus 700 rV~nspLSE~~vlGfe~G~a~~g~~~lv-------iwEaqFgDF~n~Aq~~iDqfi~s~~~kw~~--~~~lV~~lPhG~~ 770 (1021)
-++--.+.|--.+-..+|.++.+.++=. || .+=+-=+|.| -|-|.+.. ..+. ..|+|++.
T Consensus 75 i~~e~~~NEkvA~e~a~Gaq~~~~~~~~~~~Gv~~l~-~~K~~Gvnva---aD~l~~~n--~~G~~~~GG~v~v~----- 143 (1159)
T PRK13030 75 IRFLPGINEELAATAVLGTQQVEADPERTVDGVFAMW-YGKGPGVDRA---GDALKHGN--AYGSSPHGGVLVVA----- 143 (1159)
T ss_pred eEEeecCCHHHHHHHHHHhccccccCCccccceEEEE-ecCcCCcccc---hhHHHHHH--hhcCCCCCcEEEEE-----
Confidence 4555688999999999999955555510 22 2333336778 67776542 2222 56788776
Q ss_pred CCCc-CCcCchhhHhhhccCCCCCcccCCCchhhhcccccCeEEEecCCHHHHHHHHHHHH--hcCCCCcEEEEeecccc
Q 001713 771 GQGP-EHSSARLERFLQMSDDNPYVIPEMDSTLRTQIQECNWQIVNVTTPANYFHVLRRQI--HREFRKPLVVMSPKNLL 847 (1021)
Q Consensus 771 G~Gp-eHSs~r~Er~Lql~~e~~~~~~~ipg~~~~~~~~~Nl~Vv~pstpad~fhlLrrqi--~~~~~kPliv~~pK~Ll 847 (1021)
|.-| -|||. .|- |.+++ .....|-|+.||+|.+++.+.+.+. .+.+.-||++-.-..+.
T Consensus 144 gDDpg~~SSq-~eq-------dSr~~----------~~~a~iPvl~Ps~~qE~~d~~~~a~~lSr~~~~pV~lr~~t~v~ 205 (1159)
T PRK13030 144 GDDHGCVSSS-MPH-------QSDFA----------LIAWHMPVLNPANVQEYLDFGLYGWALSRYSGAWVGFKAISETV 205 (1159)
T ss_pred ecCCCCccCc-CHH-------HHHHH----------HHHcCCceeCCCCHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEe
Confidence 3332 36666 332 00011 1223577999999999999998875 46678899986554443
Q ss_pred CCccccCCcccccccCCCC-CCCCCC----CcceEe--------e-------------cCccccccCCCCCeEEEEeech
Q 001713 848 RHKECKSNLSEFDDVQGHP-GFDKQG----TRFKRL--------I-------------KDQNEHSDLEEGIRRLILCSGK 901 (1021)
Q Consensus 848 r~~~~~s~~~e~~~~~~~~-~~~~~~----~~f~~v--------i-------------~~~~~~~~~~~g~~~~Iv~~Gk 901 (1021)
.....+ .+++....+..| .|.+|. .+|..+ + .+++.........++-|||+|+
T Consensus 206 h~~~~V-~~~~~~~~~~~~~~f~~~~~~~~~r~~~~p~~~~~~~~~~rl~~~~~~~~~~~ln~~~~~~~~~~iGIItsG~ 284 (1159)
T PRK13030 206 ESGSTV-DLDPDRTRWPAPEDFTPPAGGLHNRWPDLPSLAIEARLAAKLPAVRAFARANSIDRWVAPSPDARVGIVTCGK 284 (1159)
T ss_pred eeeeeE-EcCCCcccCCCccccCCCcccccccCCCCcHHHHHHHHHHHHHHHHHHHHhcCCCceeccCCCCCEEEEEeCc
Confidence 222111 111110000011 243332 122111 0 0011000012236789999999
Q ss_pred hHHHHHHHHHHcCCCc-------EEEEEecccCCCCHHHHHHHHHcCCCceEEEEecCCcccchHhhHHHHHHHHHHhhc
Q 001713 902 VYYELYEERKKHSASD-------IAICRVEQLCPFPYDLVQRELKRYPNAEVVWSQEEPMNMGAYTYIAPRLCTAMKAVD 974 (1021)
Q Consensus 902 ~~~~l~~a~~~~~~~~-------v~ii~le~L~Pfp~~~i~~~l~k~~~~~~vwvqEe~~n~G~~~~v~~~i~~~~~~l~ 974 (1021)
.|.++.++.+.++..+ +.|..|-..+|||.+.|.+-++.+..+ ++|+|- . .+|...+.+.+....
T Consensus 285 ay~~v~EAL~~Lgl~~~~~~~lgirilKvgm~~PL~~~~i~~F~~g~d~V--lVVEE~-~-----p~iE~Qlk~~l~~~~ 356 (1159)
T PRK13030 285 AHLDLMEALRRLGLDDADLRAAGIRIYKVGLSWPLEPTRLREFADGLEEI--LVIEEK-R-----PVIEQQIKDYLYNRP 356 (1159)
T ss_pred cHHHHHHHHHHcCCCcccccccCccEEEeCCccCCCHHHHHHHHhcCCEE--EEEeCC-c-----hHHHHHHHHHHHhcc
Confidence 9999999999886433 677888799999999999999998765 777553 2 246666666553221
Q ss_pred cCCCCcEEEEcCCCC----cCCCcc-cHHHH
Q 001713 975 RGTMEDIKYVGRAPS----AASATG-FYQVH 1000 (1021)
Q Consensus 975 ~~~~~~~~~vgr~~~----~~pa~g-~~~~h 1000 (1021)
...+++.+|..+. --|..| +....
T Consensus 357 --~~~~~~v~GK~~~~G~pllp~~gEl~~~~ 385 (1159)
T PRK13030 357 --GGARPRVVGKHDEDGAPLLSELGELRPSL 385 (1159)
T ss_pred --ccCCceeEEEECCCCCcCCCCcCCcCHHH
Confidence 1124566776531 245566 44433
No 162
>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed
Probab=97.10 E-value=0.00034 Score=86.99 Aligned_cols=34 Identities=41% Similarity=0.767 Sum_probs=32.3
Q ss_pred CCCCHHHHHHHHHHHhhCCCCcCHHHHHHHhhcc
Q 001713 68 DGTSSVYLEELQRSWEADPNSVDESWQNFFRNFV 101 (1021)
Q Consensus 68 ~~~n~~yie~lY~~~~~dP~sV~~sW~~~F~~~~ 101 (1021)
+|.|.-+|||||++|++||+|||++|+.||+.+.
T Consensus 4 fG~NewlV~e~y~~y~~dp~sVd~~W~~~f~~~~ 37 (1228)
T PRK12270 4 FGQNEWLVEEMYQQYLADPNSVDPSWREFFADYG 37 (1228)
T ss_pred CCcchHHHHHHHHHHhcCccccCHHHHHHHhhcC
Confidence 6889999999999999999999999999999983
No 163
>PF09364 XFP_N: XFP N-terminal domain; InterPro: IPR018970 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria. PK activity has been sporadically reported in other microorganisms including eukaryotic yeasts. Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase is a thiamine diphosphate (ThdP)-dependent enzyme found in bacteria such as Bifidobacterium sp [, ]. This enzyme has dual-specificity with the following catalytic activities: 4.1.2.9 from EC: xylose 5-P + Pi = acetyl-P + glyeraldehyde-3-P 4.1.2.22 from EC: fructose-6-P + Pi = acetyl-P + erythrose-4-P Phosphoketolases are distantly related to transketolases, e.g. IPR005475 from INTERPRO.; PDB: 3AI7_B 3AHC_A 3AHJ_A 3AHG_A 3AHE_A 3AHI_A 3AHD_A 3AHF_A 3AHH_A.
Probab=96.97 E-value=0.0027 Score=72.35 Aligned_cols=109 Identities=17% Similarity=0.209 Sum_probs=72.7
Q ss_pred CCcccccceeehHHHHhHHhcCCCCCCCcEEEEEeCccccCCccHHHHHHHhc-CCCCCCcccEEEEEEcCCcccccCCC
Q 001713 364 SHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS-ALPNYSIGGTIHIVVNNQVAFTTDPM 442 (1021)
Q Consensus 364 Shlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDgA~sGqG~v~EalnlA-~LP~y~~GGvI~Vv~NNq~g~tT~~~ 442 (1021)
+-||..+.+|.|+++-..+ -+++|++|||.+. .|-..-+-... =|.-=+.|-|+=|+.=|++-|+-++-
T Consensus 140 GELGYaLshA~GA~~DnPd---------liv~~vvGDGEaE-TGplA~sWh~~kflnP~~dGaVLPILhLNG~KI~~pTi 209 (379)
T PF09364_consen 140 GELGYALSHAFGAVFDNPD---------LIVACVVGDGEAE-TGPLAASWHSNKFLNPATDGAVLPILHLNGYKISNPTI 209 (379)
T ss_dssp SSTS-HHHHHHHHHTT-TT----------EEEEEEETTGGG-SHHHHHHGGGGGSS-TTTS-EEEEEEEE-SBSSSSB-H
T ss_pred cchhhHHHHHhhcccCCCC---------eEEEEEecCCccc-CCcccccccccceeCcccCceeeceEEecCccccCCeE
Confidence 3488888888888885432 7999999999987 88766555433 22223445577777779999987765
Q ss_pred CCcc-cccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHH
Q 001713 443 SGRS-SQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEW 482 (1021)
Q Consensus 443 ~~rs-~~~~sd~Aka~g~p~~~VdG~D~eAV~~a~~~A~e~ 482 (1021)
.+|. ...+.+..++||...+.|+|+|++++...+..|+++
T Consensus 210 l~r~~~~eL~~lf~G~Gy~p~~Veg~dp~~~h~~ma~ald~ 250 (379)
T PF09364_consen 210 LARMSDEELEALFRGYGYEPIFVEGDDPADMHQAMAAALDW 250 (379)
T ss_dssp HHHS-HHHHHHHHHHTTEEEEEEE---HHHHHHHHHHHHHH
T ss_pred eeecCHHHHHHHHHhCCCeEEEEecCCHHHHHHHHHHHHHH
Confidence 4443 345788899999999999999999998776555543
No 164
>COG1013 PorB Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit [Energy production and conversion]
Probab=96.75 E-value=0.014 Score=65.82 Aligned_cols=114 Identities=22% Similarity=0.130 Sum_probs=81.5
Q ss_pred CCcccccceeehHHHHhHHhcCCCCCCCcEEEEEeCccccCCccHHHHHHHhc-CCCCCCcccEEEEEEcCC-cccccCC
Q 001713 364 SHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS-ALPNYSIGGTIHIVVNNQ-VAFTTDP 441 (1021)
Q Consensus 364 Shlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDgA~sGqG~v~EalnlA-~LP~y~~GGvI~Vv~NNq-~g~tT~~ 441 (1021)
|.-|-..|+|.|+.+|.+. --+|++-|||...+-|.-|=.=.+. +.. +.+||.||+ ||.|.-.
T Consensus 70 s~~gra~a~atGik~A~~~---------l~Viv~gGDG~~~dIG~~~l~h~~~Rn~d------it~iv~DNevYgnTggQ 134 (294)
T COG1013 70 SLHGRAAAVATGIKLANPA---------LSVIVIGGDGDAYDIGGNHLIHALRRNHD------ITYIVVDNEVYGNTGGQ 134 (294)
T ss_pred eccCcchhhHHHHHHhccC---------CeEEEEecchhHhhhhhHHHHHHHHcCCC------eEEEEECCeecccCCCc
Confidence 3467788999999999875 4699999999665466444222222 666 999999999 5666311
Q ss_pred CCC---------------c--ccccHHHHHhhcCccE-EEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEee
Q 001713 442 MSG---------------R--SSQYCTDVAKALDAPI-FHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVC 496 (1021)
Q Consensus 442 ~~~---------------r--s~~~~sd~Aka~g~p~-~~VdG~D~eAV~~a~~~A~e~rr~~~gPvlIe~vt 496 (1021)
... + .-.++..+|.++|.+. -++---|+......+++|++ .+||.||++.+
T Consensus 135 ~S~tTp~G~~t~t~p~Gk~~~~k~d~~~la~a~G~~yVAr~~~~~~~~l~~~i~kA~~----~~Gps~I~v~s 203 (294)
T COG1013 135 ASPTTPKGAKTKTTPYGKRSEKKKDPGLLAMAAGATYVARASVGDPKDLTEKIKKAAE----HKGPSFIDVLS 203 (294)
T ss_pred cCCCCCCCceeeecCCCCCcCCCCCHHHHHHHCCCCeEEEecccCHHHHHHHHHHHHh----ccCCeEEEEec
Confidence 100 1 1227888899999884 45666679999999999986 45999999974
No 165
>PRK09193 indolepyruvate ferredoxin oxidoreductase; Validated
Probab=96.72 E-value=0.058 Score=70.38 Aligned_cols=254 Identities=12% Similarity=0.072 Sum_probs=149.7
Q ss_pred EEecCccchHHHHHHH---------HhhccCCCCcceEehhhhhhhHhhHHHHHHHHHhhhhhhhcC--ccceEEEeCcc
Q 001713 700 TVSNSSLSEFGVLGFE---------LGYSMENPNSLVMWEAQFGDFANGAQVIFDQFVNSGESKWLR--QSGLVVMLPHG 768 (1021)
Q Consensus 700 rV~nspLSE~~vlGfe---------~G~a~~g~~~lviwEaqFgDF~n~Aq~~iDqfi~s~~~kw~~--~~~lV~~lPhG 768 (1021)
-++-=.+.|--.+-.. .|.+..|-+.++ .+=+-=+|.| -|-|.+.. ..+. .-|+|++.
T Consensus 83 i~fe~~~NEkvAae~~~GsQ~~~~~~~a~~~Gv~~l~---y~K~pGvn~a---aD~l~~~n--~~G~~~~GGvv~v~--- 151 (1165)
T PRK09193 83 IVFQPGLNEDLAATAVWGSQQVNLFPGAKYDGVFGMW---YGKGPGVDRS---GDVFRHAN--AAGTSPHGGVLALA--- 151 (1165)
T ss_pred eEEeeccCHHHHHHHHhhhcccccccceeeccceEEE---ecCcCCcccc---HhHHHHHH--hhcCCCCCcEEEEE---
Confidence 3444567787777777 666888888754 3444447788 67776542 2222 56788777
Q ss_pred CCCCCc-CCcCchhhHhhhccCCCCCcccCCCchhhhcccccCeEEEecCCHHHHHHHHHHHH--hcCCCCcEEEEeecc
Q 001713 769 YDGQGP-EHSSARLERFLQMSDDNPYVIPEMDSTLRTQIQECNWQIVNVTTPANYFHVLRRQI--HREFRKPLVVMSPKN 845 (1021)
Q Consensus 769 ~~G~Gp-eHSs~r~Er~Lql~~e~~~~~~~ipg~~~~~~~~~Nl~Vv~pstpad~fhlLrrqi--~~~~~kPliv~~pK~ 845 (1021)
|.-| -|||. .|- |.+++ .+...|-|+.|+++.+++.+.+.+. .+.+.-||++-.-..
T Consensus 152 --gDDpg~~SSq-~eq-------dSr~~----------~~~a~iPvl~Ps~~qE~~d~~~~g~~lSr~~g~pV~lr~~t~ 211 (1165)
T PRK09193 152 --GDDHAAKSST-LPH-------QSEHA----------FKAAGMPVLFPANVQEILDYGLHGWAMSRYSGLWVGMKTVTD 211 (1165)
T ss_pred --ecCCCCcccc-chh-------hhHHH----------HHHcCCceeCCCCHHHHHHHHHHHHHHHHHhCCCEEEEEEEE
Confidence 3333 26665 331 00111 1223577999999999999888764 466788999865544
Q ss_pred ccCCccccCCcccccccCCCC-CCCCCCC----cceEe--------ec-------------CccccccCCCCCeEEEEee
Q 001713 846 LLRHKECKSNLSEFDDVQGHP-GFDKQGT----RFKRL--------IK-------------DQNEHSDLEEGIRRLILCS 899 (1021)
Q Consensus 846 Llr~~~~~s~~~e~~~~~~~~-~~~~~~~----~f~~v--------i~-------------~~~~~~~~~~g~~~~Iv~~ 899 (1021)
.......+ .+++....+.-| .|.+|.+ +|..+ +. ++++........++-|||+
T Consensus 212 v~h~~~~V-~~~~~~~~~~~~~~f~~~~~g~~~r~~~~p~~~~~~~~~~rl~a~~a~a~~n~ln~~~~~~~~~~iGIIts 290 (1165)
T PRK09193 212 VVESSASV-DVDPDRVQIVLPEDFEMPPGGLNIRWPDPPLEQEARLLDYKLYAALAYARANKLDRVVIDSPNARLGIVAA 290 (1165)
T ss_pred EeeeeeeE-EcCCCcccCCCcccccCCcccccccCCCCcHHHHHHHHHHHHHHHHHHHHhCCCCeeecCCCCCCEEEEec
Confidence 43222111 111110000112 2444444 33211 00 0110000111357899999
Q ss_pred chhHHHHHHHHHHcCCC-------cEEEEEecccCCCCHHHHHHHHHcCCCceEEEEecCCcccchHhhHHHHHHHHHHh
Q 001713 900 GKVYYELYEERKKHSAS-------DIAICRVEQLCPFPYDLVQRELKRYPNAEVVWSQEEPMNMGAYTYIAPRLCTAMKA 972 (1021)
Q Consensus 900 Gk~~~~l~~a~~~~~~~-------~v~ii~le~L~Pfp~~~i~~~l~k~~~~~~vwvqEe~~n~G~~~~v~~~i~~~~~~ 972 (1021)
|+.|.++.++.+.++.. .+.|..|-..+|||.+.|.+-++....+ ++|+|- . .+|...|.+.+..
T Consensus 291 G~~y~~v~eal~~lg~~~~~~~~~gi~ilKvgm~~PL~~~~i~~Fa~g~~~v--lVVEE~-~-----p~iE~qlk~~l~~ 362 (1165)
T PRK09193 291 GKAYLDVRQALRDLGLDEETAARLGIRLYKVGMVWPLEPQGVRAFAEGLDEI--LVVEEK-R-----QIIEYQLKEELYN 362 (1165)
T ss_pred CccHHHHHHHHHHcCCChhhhcccCCCEEEeCCCCCCCHHHHHHHHhcCCEE--EEEecC-c-----hHHHHHHHHHHhh
Confidence 99999999999987643 3899999999999999999999988755 777553 2 2566666555533
Q ss_pred hccCCCCcEEEEcCCCC----cCCCcc
Q 001713 973 VDRGTMEDIKYVGRAPS----AASATG 995 (1021)
Q Consensus 973 l~~~~~~~~~~vgr~~~----~~pa~g 995 (1021)
.. ...+++.+|+.+. --|..|
T Consensus 363 ~~--~~~rp~v~GK~~~~g~~llp~~g 387 (1165)
T PRK09193 363 WP--DDVRPRVIGKFDPQGNWLLPAHG 387 (1165)
T ss_pred cc--CCcCceeEeeeCCCCCccCCCcC
Confidence 22 1123477887542 245555
No 166
>COG3960 Glyoxylate carboligase [General function prediction only]
Probab=96.34 E-value=0.0045 Score=69.13 Aligned_cols=125 Identities=26% Similarity=0.275 Sum_probs=90.0
Q ss_pred ccccCCcccccceeehHHHHhHHhcCCCCCCCcEEEEEeCccccCCccHHHHHHHhc---CCCCCCcccEEEEEEcCCc-
Q 001713 360 VANPSHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS---ALPNYSIGGTIHIVVNNQV- 435 (1021)
Q Consensus 360 ~~npShlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDgA~sGqG~v~EalnlA---~LP~y~~GGvI~Vv~NNq~- 435 (1021)
....++||..+|.|+|..-|... .-+|.+.||=.|. =.. |-|... +|| -|||++||.|
T Consensus 415 cgqagplgwtipaalgv~~adp~---------r~vvalsgdydfq--fmi-eelavgaq~k~p------yihv~vnnayl 476 (592)
T COG3960 415 CGQAGPLGWTIPAALGVCAADPK---------RNVVAISGDYDFQ--FLI-EELAVGAQFKIP------YIHVLVNNAYL 476 (592)
T ss_pred cCccCCcccccchhhceeecCCC---------CceEEeecCchHH--HHH-HHHhhhhcccCc------eEEEEecchHH
Confidence 45568899999999999877442 4588899999984 433 444443 999 9999999976
Q ss_pred --------ccccCCCCCcc------------cccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEe
Q 001713 436 --------AFTTDPMSGRS------------SQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLV 495 (1021)
Q Consensus 436 --------g~tT~~~~~rs------------~~~~sd~Aka~g~p~~~VdG~D~eAV~~a~~~A~e~rr~~~gPvlIe~v 495 (1021)
||+.+..-+.. .-+-..++++.|+..++|- +|++...|+..|.....+..-||++|++
T Consensus 477 glirqaqr~f~mdy~v~laf~nin~~~~~gygvdhv~v~eglgckairv~--~p~e~a~af~~a~~lm~eh~vpvvve~i 554 (592)
T COG3960 477 GLIRQAQRAFDMDYCVQLAFENINSSEVNGYGVDHVKVAEGLGCKAIRVF--KPEDIAPAFEQAKALMAQHRVPVVVEVI 554 (592)
T ss_pred HHHHHHHhcCCccceeeehhhccCCccccccCccceeehhccCceeEEec--ChHHhhHHHHHHHHHHHhcCCCeeeehH
Confidence 44443221110 0112235777788888875 7888899999999888898999999999
Q ss_pred eeccCCCCC
Q 001713 496 CYRRFGHNE 504 (1021)
Q Consensus 496 tYR~~GHne 504 (1021)
--|..--+.
T Consensus 555 lervtnism 563 (592)
T COG3960 555 LERVTNISM 563 (592)
T ss_pred HHHhhcccc
Confidence 888755443
No 167
>KOG1184 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=95.93 E-value=0.018 Score=68.10 Aligned_cols=115 Identities=17% Similarity=0.152 Sum_probs=79.2
Q ss_pred CCcccccceeehHHHHhHHhcCCCCCCCcEEEEEeCccccCCccHHHHHHHhc--CCCCCCcccEEEEEEcCCcccccCC
Q 001713 364 SHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS--ALPNYSIGGTIHIVVNNQVAFTTDP 441 (1021)
Q Consensus 364 Shlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDgA~sGqG~v~EalnlA--~LP~y~~GGvI~Vv~NNq~g~tT~~ 441 (1021)
.++|..+|.++|++.|.+. ..+|+|.|||+| |-.++|-..|. +||- .||++.||+|-+-.-.
T Consensus 415 gsIG~svga~lG~a~a~~e---------~rvilfiGDGs~--qlTvQeiStmir~gl~~-----~if~~NN~GYTIE~~I 478 (561)
T KOG1184|consen 415 GSIGWSVGATLGYAQAAPE---------KRVILFIGDGSF--QLTVQEISTMIRWGLKP-----IIFLINNGGYTIEVEI 478 (561)
T ss_pred eeccccchhhhhhhhccCC---------ceEEEEecCccc--eeeHHHHHHHHhcCCCc-----EEEEEeCCceEEEEee
Confidence 5688999999999999886 469999999999 79999999999 8884 5666666667655433
Q ss_pred CCC----cccccHHHHHhhcCccEEEEeC---CCHHHHHHHHHHHHHHHHccCCCEEEEEee
Q 001713 442 MSG----RSSQYCTDVAKALDAPIFHVNG---DDMEAVAHVCELAAEWRQTFHSDVVVDLVC 496 (1021)
Q Consensus 442 ~~~----rs~~~~sd~Aka~g~p~~~VdG---~D~eAV~~a~~~A~e~rr~~~gPvlIe~vt 496 (1021)
++. ..+-+.+++-++||.-.=++-+ .--++...+.+.+.- .+.+++.+||+.-
T Consensus 479 H~~~Yn~I~~Wd~~~l~~afg~~~gk~~~~~v~~~~e~~~~~~~~~~--~~~~~i~liEv~l 538 (561)
T KOG1184|consen 479 HDGPYNDIQNWDYTALLEAFGAGEGKYETHKVRTEEELVEAIKDATF--EKNDKIRLIEVIL 538 (561)
T ss_pred cCCCccccccchHHHHHHhhcCccceeEEeeeccchHHHHHHhhhhh--cccCceEEEEEec
Confidence 221 1225677888888755411111 122445555555542 3567799999964
No 168
>COG3962 Acetolactate synthase [Amino acid transport and metabolism]
Probab=95.15 E-value=0.093 Score=61.50 Aligned_cols=111 Identities=13% Similarity=0.049 Sum_probs=73.9
Q ss_pred CCcccccceeehHHHHhHHhcCCCCCCCcEEEEEeCccccCCccHHHHHHHhc--CCCCCCcccEEEEEEcCCcccccC-
Q 001713 364 SHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS--ALPNYSIGGTIHIVVNNQVAFTTD- 440 (1021)
Q Consensus 364 Shlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDgA~sGqG~v~EalnlA--~LP~y~~GGvI~Vv~NNq~g~tT~- 440 (1021)
|++|.-+.-++|+..|..+ .=++++.||||+. ..-.|-..-- ...- +|.+..|-+||.--.
T Consensus 444 SCMGYEiaG~lG~K~a~pd---------reV~vmVGDGSym--MlnSEL~Tsv~~g~Ki-----~Vvl~DN~GyGCIn~L 507 (617)
T COG3962 444 SCMGYEIAGGLGAKAAEPD---------REVYVMVGDGSYM--MLNSELATSVMLGKKI-----IVVLLDNRGYGCINRL 507 (617)
T ss_pred cccccccccccccccCCCC---------CeEEEEEcccchh--hhhHHHHHHHHcCCeE-----EEEEECCCCcchhhhh
Confidence 6788888888888855432 4589999999985 3333332222 3441 344455555664321
Q ss_pred -----------------CCCCcccccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEee
Q 001713 441 -----------------PMSGRSSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVC 496 (1021)
Q Consensus 441 -----------------~~~~rs~~~~sd~Aka~g~p~~~VdG~D~eAV~~a~~~A~e~rr~~~gPvlIe~vt 496 (1021)
.+.....-+++..|.+||+...+|+ +++++..| ++.+++..+.+||++.|
T Consensus 508 Qm~~Gg~sf~~~~r~~~~e~~~~~vDfA~~A~s~Ga~~~kv~--~i~eL~aA----L~~Ak~~~~ttvi~I~t 574 (617)
T COG3962 508 QMATGGASFNNLLRDTDHEEEILQVDFAAHAESYGAKAYKVG--TIEELEAA----LADAKASDRTTVIVIDT 574 (617)
T ss_pred hhhcCcchhhhhhhhhcccCCCCcccHHHHHhhcCceeEecC--CHHHHHHH----HHHHHhCCCCEEEEEec
Confidence 1122445678888999999999998 67777654 45556788999999976
No 169
>cd03377 TPP_PFOR_PNO Thiamine pyrophosphate (TPP family), PFOR_PNO subfamily, TPP-binding module; composed of proteins similar to the single subunit pyruvate ferredoxin oxidoreductase (PFOR) of Desulfovibrio Africanus, present in bacteria and amitochondriate eukaryotes. This subfamily also includes proteins characterized as pyruvate NADP+ oxidoreductase (PNO). These enzymes are dependent on TPP and a divalent metal cation as cofactors. PFOR and PNO catalyze the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The PFOR from cyanobacterium Anabaena (NifJ) is required for the transfer of electrons from pyruvate to flavodoxin, which reduces nitrogenase. The facultative anaerobic mitochondrion of the photosynthetic protist Euglena gra
Probab=94.04 E-value=0.37 Score=55.80 Aligned_cols=95 Identities=11% Similarity=-0.007 Sum_probs=64.7
Q ss_pred cEEEEEeCccccCCccHHHHHHHhc-CCCCCCcccEEEEEEcCC-ccccc-------CCC---------CCcccccHHHH
Q 001713 392 NMAVLIHGDGSFAGQGVVYETLHLS-ALPNYSIGGTIHIVVNNQ-VAFTT-------DPM---------SGRSSQYCTDV 453 (1021)
Q Consensus 392 ~v~v~~~GDgA~sGqG~v~EalnlA-~LP~y~~GGvI~Vv~NNq-~g~tT-------~~~---------~~rs~~~~sd~ 453 (1021)
.-++++-|||....-|.-+=.=-++ +.. +.+||.||. ||.|. |.. ....-.++..+
T Consensus 152 ~~v~v~gGDG~~ydIG~~~l~ha~~r~~n------i~~iv~DNe~Y~nTGgQ~S~tTp~Ga~t~tsp~Gk~~~kkd~~~i 225 (365)
T cd03377 152 KSVWIIGGDGWAYDIGYGGLDHVLASGEN------VNILVLDTEVYSNTGGQASKATPLGAVAKFAAAGKRTGKKDLGMI 225 (365)
T ss_pred cceEEEecchhhhccchhhHHHHHHcCCC------eEEEEECCcccccCCCcCCCCCCCcCcCccCCCCCCCCCcCHHHH
Confidence 3589999999665344322111122 777 888999998 67652 111 11123567888
Q ss_pred HhhcCccEEE-EeC-CCHHHHHHHHHHHHHHHHccCCCEEEEEee
Q 001713 454 AKALDAPIFH-VNG-DDMEAVAHVCELAAEWRQTFHSDVVVDLVC 496 (1021)
Q Consensus 454 Aka~g~p~~~-VdG-~D~eAV~~a~~~A~e~rr~~~gPvlIe~vt 496 (1021)
+.++|++.+- +-- -|+..+..++++|.+ .+||.||++.+
T Consensus 226 a~a~g~~YVA~~s~~~~~~~~~~~i~eA~~----~~Gps~I~v~s 266 (365)
T cd03377 226 AMSYGNVYVAQIALGANDNQTLKAFREAEA----YDGPSLIIAYS 266 (365)
T ss_pred HHHcCCCEEEEEecccCHHHHHHHHHHHhc----CCCCEEEEEEc
Confidence 9999999554 543 599999999999985 59999999985
No 170
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=93.90 E-value=0.24 Score=60.27 Aligned_cols=112 Identities=16% Similarity=0.231 Sum_probs=79.9
Q ss_pred ccCCcccccceeehHHHHhHHhcCCCCCCCcEEEEEeCccccCCccHHHHHHHhc--CCCCCCcccEEEEEEcCCc-ccc
Q 001713 362 NPSHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS--ALPNYSIGGTIHIVVNNQV-AFT 438 (1021)
Q Consensus 362 npShlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDgA~sGqG~v~EalnlA--~LP~y~~GGvI~Vv~NNq~-g~t 438 (1021)
..-.+|+.+.+|-|+.++.. ..+|+++||+.|.--|+-. -.|-. +.+ ++.+|.+|.+ ++|
T Consensus 426 ~t~~mGssig~a~g~~~~~~----------k~~va~iGDsTF~HsGi~~-l~nAV~n~~~------~~~vvLdN~~tAMT 488 (640)
T COG4231 426 TTTMMGSSIGIAGGLSFAST----------KKIVAVIGDSTFFHSGILA-LINAVYNKAN------ILVVVLDNRTTAMT 488 (640)
T ss_pred hhhhccchhhhccccccccC----------CceEEEeccccccccCcHH-HHHHHhcCCC------eEEEEEeccchhcc
Confidence 33457888888888887654 4699999999998667655 44444 888 7777777775 777
Q ss_pred cC-CCCC---------cccccHHHHHhhcCccEEEE-eCCCHHHHHHHHHHHHHHHHccCCCEEEEE
Q 001713 439 TD-PMSG---------RSSQYCTDVAKALDAPIFHV-NGDDMEAVAHVCELAAEWRQTFHSDVVVDL 494 (1021)
Q Consensus 439 T~-~~~~---------rs~~~~sd~Aka~g~p~~~V-dG~D~eAV~~a~~~A~e~rr~~~gPvlIe~ 494 (1021)
.. +..+ +..-.+.++.|+.|+--+.+ |=-|+.++.++.++|+ +..+|.+|-.
T Consensus 489 GgQp~pg~~~~~~g~~~~~i~iee~~r~~Gv~~v~~vdp~~~~~~~~~~keal----e~~gpsViia 551 (640)
T COG4231 489 GGQPHPGTGVAAEGTKSTAIVIEEVVRAMGVEDVETVDPYDVKELSEAIKEAL----EVPGPSVIIA 551 (640)
T ss_pred CCCCCCCcccccCCCccceeEhhHhhhhcCceeeeccCCcchHHHHHHHHHHh----cCCCceEEEE
Confidence 52 2221 12235778899999886664 6578999998888887 4677888755
No 171
>PF01855 POR_N: Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg; InterPro: IPR002880 This family includes the N-terminal region of the pyruvate ferredoxin oxidoreductase, corresponding to the first two structural domains. This region is involved in inter subunit contacts []. Pyruvate oxidoreductase (POR) catalyses the final step in the fermentation of carbohydrates in anaerobic microorganisms []. This involves the oxidative decarboxylation of pyruvate with the participation of thiamine followed by the transfer of an acetyl moiety to coenzyme A for the synthesis of acetyl-CoA []. The family also includes pyruvate flavodoxin oxidoreductase as encoded by the nifJ gene in cyanobacterium which is required for growth on molecular nitrogen when iron is limited [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2PDA_B 2C3Y_A 2C3P_B 2UZA_A 2C3U_B 2C42_A 1B0P_B 2C3M_A 2C3O_B 1KEK_B ....
Probab=93.70 E-value=0.12 Score=56.56 Aligned_cols=116 Identities=12% Similarity=0.206 Sum_probs=69.5
Q ss_pred ccchHHHHHHHHhhccCCCCcceEehhhhhhhHhhHHHHHHHHHhhhhhhhcCccceEEEeCc-cCCCC-CcCCcCchhh
Q 001713 705 SLSEFGVLGFELGYSMENPNSLVMWEAQFGDFANGAQVIFDQFVNSGESKWLRQSGLVVMLPH-GYDGQ-GPEHSSARLE 782 (1021)
Q Consensus 705 pLSE~~vlGfe~G~a~~g~~~lviwEaqFgDF~n~Aq~~iDqfi~s~~~kw~~~~~lV~~lPh-G~~G~-GpeHSs~r~E 782 (1021)
.-+|-+.++..+|+|++|-|.++ +.=|-=++.+ .|.+...+ +...|+||.+-. +..+. ++.|+.. -.
T Consensus 42 ~E~E~~A~~~~~GAs~aG~ra~t---~ts~~Gl~lm---~e~l~~a~----~~~~P~V~~~~~R~g~~~g~~~~~~q-~D 110 (230)
T PF01855_consen 42 AESEHAAMEAAIGASAAGARAMT---ATSGPGLNLM---AEPLYWAA----GTELPIVIVVVQRAGPSPGLSTQPEQ-DD 110 (230)
T ss_dssp -SSHHHHHHHHHHHHHTT--EEE---EEECCHHHHH---CCCHHHHH----HTT--EEEEEEEB---SSSB--SB-S-HH
T ss_pred ecchHHHHHHHHHHHhcCCceEE---eecCCccccc---HhHHHHHH----HcCCCEEEEEEECCCCCCCCcCcCCh-hH
Confidence 56999999999999999999998 4444434444 44433221 345788887743 33333 3333222 11
Q ss_pred HhhhccCCCCCcccCCCchhhhcccccCeEEEecCCHHHHHHHHHHHHh--cCCCCcEEEEeeccccCCcc
Q 001713 783 RFLQMSDDNPYVIPEMDSTLRTQIQECNWQIVNVTTPANYFHVLRRQIH--REFRKPLVVMSPKNLLRHKE 851 (1021)
Q Consensus 783 r~Lql~~e~~~~~~~ipg~~~~~~~~~Nl~Vv~pstpad~fhlLrrqi~--~~~~kPliv~~pK~Llr~~~ 851 (1021)
.+ +.++.+|.|+.|+|+.++|.+.+.+.. ..++.|||++..+.+.-|..
T Consensus 111 ~~--------------------~~~d~~~~vl~p~~~QEa~d~~~~A~~lAe~~~~PViv~~Dg~~~sh~~ 161 (230)
T PF01855_consen 111 LM--------------------AARDSGWIVLAPSSPQEAYDMTLIAFNLAEKYQTPVIVLFDGFLCSHSR 161 (230)
T ss_dssp HH--------------------HTTTSS-EEEE--SHHHHHHHHHHHHHHHHHHTSEEEEEEECCCCTC-E
T ss_pred HH--------------------HHHhcCeEEEeCCCHHHHHHHHHHHHHHHHHHCCCEEEEechhhhcCcc
Confidence 12 122457999999999999999988754 46899999999999984443
No 172
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
Probab=90.77 E-value=1.7 Score=57.95 Aligned_cols=94 Identities=17% Similarity=0.133 Sum_probs=64.7
Q ss_pred cEEEEEeCccccCCccH--HHHHHHhcCCCCCCcccEEEEEEcCC-ccccc-------CCC---------CCcccccHHH
Q 001713 392 NMAVLIHGDGSFAGQGV--VYETLHLSALPNYSIGGTIHIVVNNQ-VAFTT-------DPM---------SGRSSQYCTD 452 (1021)
Q Consensus 392 ~v~v~~~GDgA~sGqG~--v~EalnlA~LP~y~~GGvI~Vv~NNq-~g~tT-------~~~---------~~rs~~~~sd 452 (1021)
.-++++-|||..-+-|. ++=++. .+.. +.+||.||+ |+-|. |.. ......++..
T Consensus 952 ~sv~~~~GDG~~~diG~~~l~~~~~-r~~~------v~~i~~dne~Y~nTggQ~S~~tp~g~~t~~~~~g~~~~kkd~~~ 1024 (1165)
T TIGR02176 952 KSVWIIGGDGWAYDIGYGGLDHVLA-SGKD------VNVLVMDTEVYSNTGGQSSKATPTGAIAKFAAAGKRTSKKDLGM 1024 (1165)
T ss_pred ceeEEEecchhhhccCccchHHHHH-cCCC------eEEEEECCcccccCCCcCCCCCCCcCccccCCCCCCCCCcCHHH
Confidence 46899999996543442 222221 2677 888999998 56552 211 1112346778
Q ss_pred HHhhcCccEE-EEe-CCCHHHHHHHHHHHHHHHHccCCCEEEEEee
Q 001713 453 VAKALDAPIF-HVN-GDDMEAVAHVCELAAEWRQTFHSDVVVDLVC 496 (1021)
Q Consensus 453 ~Aka~g~p~~-~Vd-G~D~eAV~~a~~~A~e~rr~~~gPvlIe~vt 496 (1021)
+|.++|.+.+ ++. |-++..+..++++|. +++||.+|++.+
T Consensus 1025 ~a~~~g~~yvA~~~~~~~~~~~~~~~~~A~----~~~G~s~i~~~~ 1066 (1165)
T TIGR02176 1025 MAMTYGYVYVAQVSMGANMQQTLKAFREAE----AYDGPSIVIAYS 1066 (1165)
T ss_pred HHHHCCCCEEEEEecccCHHHHHHHHHHHH----cCCCCEEEEEEC
Confidence 8999999854 565 568999999999997 468999999986
No 173
>PF03894 XFP: D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase; InterPro: IPR005593 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria. PK activity has been sporadically reported in other microorganisms including eukaryotic yeasts. Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase is a thiamine diphosphate (ThdP)-dependent enzyme found in bacteria such as Bifidobacterium sp [, ]. This enzyme has dual-specificity with the following catalytic activities: 4.1.2.9 from EC: xylose 5-P + Pi = acetyl-P + glyeraldehyde-3-P 4.1.2.22 from EC: fructose-6-P + Pi = acetyl-P + erythrose-4-P Phosphoketolases are distantly related to transketolases, e.g. IPR005475 from INTERPRO.; GO: 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3AI7_B 3AHC_A 3AHJ_A 3AHG_A 3AHE_A 3AHI_A 3AHD_A 3AHF_A 3AHH_A.
Probab=88.01 E-value=6.9 Score=41.24 Aligned_cols=148 Identities=18% Similarity=0.248 Sum_probs=77.8
Q ss_pred CCcEEEEcccCC---C--cccccccceeccCCcCceec-cCCCcccccCCcccEEecCccchHHHHHHHHhhccCCCCcc
Q 001713 653 GNHVRLSGQDVE---R--GTFSHRHSVLHDQETGEQYC-PLDHVMMNQDAEMFTVSNSSLSEFGVLGFELGYSMENPNSL 726 (1021)
Q Consensus 653 ~~~Vrl~GeDv~---r--GtF~~RHavl~dq~t~~~y~-pL~~L~~~~~~g~~rV~nspLSE~~vlGfe~G~a~~g~~~l 726 (1021)
..+.||+|-|=- | .+|.+ |++.|. +...=..+........+.+.|||..+-|+--||.+.|-..|
T Consensus 16 ~~nfRvf~PDEt~SNrL~~v~e~---------t~r~w~~~~~~~~~~~~~~~~G~V~e~LSEh~c~G~leGY~LtGrhgl 86 (179)
T PF03894_consen 16 PRNFRVFGPDETASNRLNAVFEV---------TNRQWMARILPPDDDEHLAPGGRVMEVLSEHQCQGWLEGYLLTGRHGL 86 (179)
T ss_dssp TTTEEEEESS-TTTTT-GGGGGT-----------EE--S----TTT-TTEESS-SEEE-S-HHHHHHHHHHHHHTT-EEE
T ss_pred CCcceeECCCcchhhchHHHHHh---------cccccccccCCCcchhhcccCCeeeeecCHHHHHHHHHHHHhcCCccc
Confidence 558999999953 2 56655 544332 11000000112344667799999999999999999999988
Q ss_pred eEehhhhhhhHhhHHHHHHHHHh----hhhhhhcCc-cceEEEe-CccCC--CCCcCCcCch-hhHhhhccCCCCCcccC
Q 001713 727 VMWEAQFGDFANGAQVIFDQFVN----SGESKWLRQ-SGLVVML-PHGYD--GQGPEHSSAR-LERFLQMSDDNPYVIPE 797 (1021)
Q Consensus 727 viwEaqFgDF~n~Aq~~iDqfi~----s~~~kw~~~-~~lV~~l-PhG~~--G~GpeHSs~r-~Er~Lql~~e~~~~~~~ 797 (1021)
. +-|=-|+-.---++.|++- +.+..|... .+|.+++ -|.++ -.|-.|..-- ++.+|....
T Consensus 87 f---~sYEAF~~ivdsM~~Qh~Kwl~~~~~~~wR~~~~SlN~l~TS~~wrQdhNG~SHQdPgfi~~~~~k~~-------- 155 (179)
T PF03894_consen 87 F---ASYEAFAHIVDSMLNQHAKWLRHARELPWRAPIPSLNYLLTSHVWRQDHNGFSHQDPGFIDHVLNKKP-------- 155 (179)
T ss_dssp E---EEEGGGGGGGHHHHHHHHHHHHHHHH-TTS---B-EEEEEES-CCG-TTT-GGG---THHHHHHCC----------
T ss_pred c---cccchhHHHHHHHHHHHHHHHHHHHhCcCCCCCcceeEEeeccceecCCCCcccCCChHHHHHHhcCc--------
Confidence 7 6666688766566777652 235556553 3455554 45663 4566665542 333332221
Q ss_pred CCchhhhcccccCeEEEecCCHHHHHHHHHHHHh
Q 001713 798 MDSTLRTQIQECNWQIVNVTTPANYFHVLRRQIH 831 (1021)
Q Consensus 798 ipg~~~~~~~~~Nl~Vv~pstpad~fhlLrrqi~ 831 (1021)
..++|..|.++--+-..+..+++
T Consensus 156 -----------~~~RvylPpDANtlLav~~~clr 178 (179)
T PF03894_consen 156 -----------DVVRVYLPPDANTLLAVMDHCLR 178 (179)
T ss_dssp -----------T-EEEEE-SSHHHHHHHHHHHHH
T ss_pred -----------ccceeecCCcHhHHHHHHHHHhc
Confidence 25999999888766665555543
No 174
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=85.71 E-value=2.9 Score=43.12 Aligned_cols=105 Identities=13% Similarity=0.089 Sum_probs=68.1
Q ss_pred eeehHHHHhHHhcCCCCCCCcEEEEEeCccccCCccHHHHHHHhcCCCCCCcccEEEEEEcCCcc-cccCC--CCCc---
Q 001713 372 VVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQVA-FTTDP--MSGR--- 445 (1021)
Q Consensus 372 vA~G~A~A~q~~~~d~~~~~~v~v~~~GDgA~sGqG~v~EalnlA~LP~y~~GGvI~Vv~NNq~g-~tT~~--~~~r--- 445 (1021)
.|.|.+++.+ - .++++..|=|.++.-.-+.|+ ...+.| +|+|+-+.... ..+.. ....
T Consensus 50 mA~gyar~t~----~-----gv~~~t~GpG~~n~~~gl~~A-~~~~~P------vl~i~g~~~~~~~~~~~~~~~~~~~~ 113 (162)
T cd07038 50 AADGYARVKG----L-----GALVTTYGVGELSALNGIAGA-YAEHVP------VVHIVGAPSTKAQASGLLLHHTLGDG 113 (162)
T ss_pred HHHHHHHhhC----C-----EEEEEcCCccHHHHHHHHHHH-HHcCCC------EEEEecCCCccccccccceeeccccc
Confidence 4556666541 1 566777788888755556666 344999 99998665421 11100 0000
Q ss_pred ccccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEE
Q 001713 446 SSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDL 494 (1021)
Q Consensus 446 s~~~~sd~Aka~g~p~~~VdG~D~eAV~~a~~~A~e~rr~~~gPvlIe~ 494 (1021)
...+..++.+.+--...+|. +++.+-.+++.|+..+..+++||+|++
T Consensus 114 ~~~d~~~~~~~~tk~~~~v~--~~~~i~~~v~~A~~~a~s~~gPV~l~i 160 (162)
T cd07038 114 DFDVFLKMFEEITCAAARLT--DPENAAEEIDRVLRTALRESRPVYIEI 160 (162)
T ss_pred chHHHHHHHHhheeEEEEeC--CHHHHHHHHHHHHHHHHHCCCCEEEEc
Confidence 01135667777777777775 778888888999988888889999987
No 175
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=83.77 E-value=8 Score=38.91 Aligned_cols=91 Identities=12% Similarity=0.059 Sum_probs=56.7
Q ss_pred EEEEEeCccccCCccHHHHHHHhcCCCCCCcccEEEEEEcCCcccccCCCCCcccccHHHHHhhcCccEEEEeCCCHHHH
Q 001713 393 MAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQVAFTTDPMSGRSSQYCTDVAKALDAPIFHVNGDDMEAV 472 (1021)
Q Consensus 393 v~v~~~GDgA~sGqG~v~EalnlA~LP~y~~GGvI~Vv~NNq~g~tT~~~~~rs~~~~sd~Aka~g~p~~~VdG~D~eAV 472 (1021)
++++..|=|..+.-..++++..- ++| +|+|+-+-...-.... .....+..+..+.+--..++++ +++.+
T Consensus 62 v~~~~~gpG~~n~~~~l~~A~~~-~~P------ll~i~~~~~~~~~~~~--~~q~~d~~~~~~~~~~~~~~i~--~~~~~ 130 (155)
T cd07035 62 VVLVTSGPGLTNAVTGLANAYLD-SIP------LLVITGQRPTAGEGRG--AFQEIDQVALFRPITKWAYRVT--SPEEI 130 (155)
T ss_pred EEEEcCCCcHHHHHHHHHHHHhh-CCC------EEEEeCCCccccccCC--cccccCHHHHHHHHhceEEEcC--CHHHH
Confidence 44444466666533334433333 999 8888765443221111 1112345566666655566664 78899
Q ss_pred HHHHHHHHHHHHcc-CCCEEEEE
Q 001713 473 AHVCELAAEWRQTF-HSDVVVDL 494 (1021)
Q Consensus 473 ~~a~~~A~e~rr~~-~gPvlIe~ 494 (1021)
...+..|+..+... ++||.|++
T Consensus 131 ~~~i~~A~~~a~~~~~gPv~l~i 153 (155)
T cd07035 131 PEALRRAFRIALSGRPGPVALDL 153 (155)
T ss_pred HHHHHHHHHHhcCCCCCcEEEEe
Confidence 99999999998887 79999986
No 176
>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase. This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A
Probab=83.58 E-value=3.3 Score=48.30 Aligned_cols=115 Identities=17% Similarity=0.275 Sum_probs=79.9
Q ss_pred cchHHHHHHHHhhccC-CCCcceEehhhhhhhHhhHHHHHHHHHhhhhhhhcCccceEEEeCc-cCCC--CCcCCcC-c-
Q 001713 706 LSEFGVLGFELGYSME-NPNSLVMWEAQFGDFANGAQVIFDQFVNSGESKWLRQSGLVVMLPH-GYDG--QGPEHSS-A- 779 (1021)
Q Consensus 706 LSE~~vlGfe~G~a~~-g~~~lviwEaqFgDF~n~Aq~~iDqfi~s~~~kw~~~~~lV~~lPh-G~~G--~GpeHSs-~- 779 (1021)
-.|...+|.+.||.+. |.+|+|+ +|-+-+-|. + +-+.|--.....+.|+++++=+ |..| .-|+|.- .
T Consensus 33 ~~E~~av~iaaG~~latG~~~~v~--mQnSGlGn~----v-N~l~SL~~~~~y~iP~l~~i~~RG~~g~~depqh~~~G~ 105 (361)
T TIGR03297 33 ANEGAAVGLAAGAYLATGKRAAVY--MQNSGLGNA----V-NPLTSLADTEVYDIPLLLIVGWRGEPGVHDEPQHVKQGR 105 (361)
T ss_pred CCchHHHHHHHHHHHhcCCccEEE--EecCchhhh----h-hHHHhhccccccCcCeeEEEecCCCCCCCCCchhhHHhH
Confidence 4599999999999999 9999994 688888773 3 3344433355567899988865 6644 3588854 2
Q ss_pred hhhHhhhccCCCCCcccCCCchhhhcccccCeEEEecCCHHHHHHHHHHHHhc--CCCCcEEEEeecccc
Q 001713 780 RLERFLQMSDDNPYVIPEMDSTLRTQIQECNWQIVNVTTPANYFHVLRRQIHR--EFRKPLVVMSPKNLL 847 (1021)
Q Consensus 780 r~Er~Lql~~e~~~~~~~ipg~~~~~~~~~Nl~Vv~pstpad~fhlLrrqi~~--~~~kPliv~~pK~Ll 847 (1021)
-.++.|+.+ .|| ..++ |.++.+....+.+++.. ..++|+.++-+|..+
T Consensus 106 ~t~~lL~~~--------~i~-----------~~~~-~~~~~~~~~~~~~a~~~~~~~~~p~a~l~~~~~~ 155 (361)
T TIGR03297 106 ITLSLLDAL--------EIP-----------WEVL-STDNDEALAQIERALAHALATSRPYALVVRKGTF 155 (361)
T ss_pred HHHHHHHHc--------CCC-----------EEEC-CCChHHHHHHHHHHHHHHHHHCCCEEEEEccccc
Confidence 357777755 333 3333 46677777766666543 348999999999887
No 177
>cd06586 TPP_enzyme_PYR Pyrimidine (PYR) binding domain of thiamine pyrophosphate (TPP)-dependent enzymes. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this group. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. In the case of 2-oxoisovalerate dehydrogenase (2OXO), sulfopyruvate deca
Probab=83.10 E-value=5.6 Score=39.57 Aligned_cols=104 Identities=13% Similarity=0.162 Sum_probs=61.2
Q ss_pred ceeehHHHHhHHhcCCCCCCCcEEEEEeCccccCCccHHHHHHHhcCCCCCCcccEEEEEEcCCcccccCCCCCcccccH
Q 001713 371 PVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQVAFTTDPMSGRSSQYC 450 (1021)
Q Consensus 371 PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDgA~sGqG~v~EalnlA~LP~y~~GGvI~Vv~NNq~g~tT~~~~~rs~~~~ 450 (1021)
.+|.|.+++.. ..++++.+|-|..+.-..++++. ..++| +|+|+......-.. .......+-
T Consensus 49 ~~A~G~a~~~~---------~~v~~~~~gpg~~~~~~~l~~a~-~~~~P------vl~i~~~~~~~~~~--~~~~q~~~~ 110 (154)
T cd06586 49 GAAAGYARAGG---------PPVVIVTSGTGLLNAINGLADAA-AEHLP------VVFLIGARGISAQA--KQTFQSMFD 110 (154)
T ss_pred HHHHHHHHhhC---------CEEEEEcCCCcHHHHHHHHHHHH-hcCCC------EEEEeCCCChhhhc--cCcccccCH
Confidence 34566666532 14556666999877544455333 33999 89888655532110 111111122
Q ss_pred HHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEE
Q 001713 451 TDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDL 494 (1021)
Q Consensus 451 sd~Aka~g~p~~~VdG~D~eAV~~a~~~A~e~rr~~~gPvlIe~ 494 (1021)
...++ +++-..+--.+++.....+..|+..+....+||+|++
T Consensus 111 ~~~~~--~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~gPv~l~i 152 (154)
T cd06586 111 LGMYR--SIPEANISSPSPAELPAGIDHAIRTAYASQGPVVVRL 152 (154)
T ss_pred HHHHH--HhhheEEEeCCHHHHHHHHHHHHHHHhcCCCCEEEEc
Confidence 23343 4555555446677778888888887777789999986
No 178
>TIGR03845 sulfopyru_alph sulfopyruvate decarboxylase, alpha subunit. This model represents the alpha subunit, or the N-terminal region, of sulfopyruvate decarboxylase, an enzyme of coenzyme M biosynthesis. Coenzyme M is found almost exclusively in the methanogenic archaea. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=82.58 E-value=7.1 Score=40.23 Aligned_cols=110 Identities=13% Similarity=0.164 Sum_probs=66.9
Q ss_pred ccchHHHHHHHHhhccCCCCcceEehhhhhhhHhhHHHHHHHHHhhhhhhh-cCccceEEEeCc-cCCCCC-cCC--cCc
Q 001713 705 SLSEFGVLGFELGYSMENPNSLVMWEAQFGDFANGAQVIFDQFVNSGESKW-LRQSGLVVMLPH-GYDGQG-PEH--SSA 779 (1021)
Q Consensus 705 pLSE~~vlGfe~G~a~~g~~~lviwEaqFgDF~n~Aq~~iDqfi~s~~~kw-~~~~~lV~~lPh-G~~G~G-peH--Ss~ 779 (1021)
.-.|....+++.|+.+.+.++.++ .|-.-..| + +.-+. .-+ ..+.||+++.=+ |..|.. +.| ...
T Consensus 40 ~~~ee~aa~~aAg~~~~~~~~~v~--~~~sG~gn-~---~~~l~----~a~~~~~~Pvl~i~g~rg~~~~~~~~q~~~g~ 109 (157)
T TIGR03845 40 LTREEEGVGICAGAYLAGKKPAIL--MQSSGLGN-S---INALA----SLNKTYGIPLPILASWRGVYKEKIPAQIPMGR 109 (157)
T ss_pred cCChHHHHHHHHHHHHhcCCcEEE--EeCCcHHH-H---HHHHH----HHHHcCCCCEEEEEeccCCCCCCCccccchhh
Confidence 557888889999988988888763 33322443 2 22222 223 457899998732 332111 111 111
Q ss_pred hhhHhhhccCCCCCcccCCCchhhhcccccCeEEEecCCHHHHHHHHHHHHhc--CCCCcEEEEeeccc
Q 001713 780 RLERFLQMSDDNPYVIPEMDSTLRTQIQECNWQIVNVTTPANYFHVLRRQIHR--EFRKPLVVMSPKNL 846 (1021)
Q Consensus 780 r~Er~Lql~~e~~~~~~~ipg~~~~~~~~~Nl~Vv~pstpad~fhlLrrqi~~--~~~kPliv~~pK~L 846 (1021)
..|..||.+ ++.....++|+|. ..+.++++. ..++|+.|+.+|++
T Consensus 110 ~~~~~l~~~---------------------~i~~~~i~~~e~~-~~i~~A~~~a~~~~gPv~il~~~~~ 156 (157)
T TIGR03845 110 ATPKLLDTL---------------------GIPYTIPREPEEA-KLIEKAISDAYENSRPVAALLDPKY 156 (157)
T ss_pred hhHHHHHHc---------------------CCCeEEeCCHHHH-HHHHHHHHHHHhCCCCEEEEEeCCc
Confidence 134444433 3445666789999 999998863 44699999999876
No 179
>PRK08659 2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Validated
Probab=82.07 E-value=5.7 Score=46.61 Aligned_cols=95 Identities=15% Similarity=0.145 Sum_probs=65.8
Q ss_pred ccCCccHH--HHHHHhc---CCCCCCcccEEEEEEcCCcccccCCCCCcccccHH-HHHhhc-CccEEEEeCCCHHHHHH
Q 001713 402 SFAGQGVV--YETLHLS---ALPNYSIGGTIHIVVNNQVAFTTDPMSGRSSQYCT-DVAKAL-DAPIFHVNGDDMEAVAH 474 (1021)
Q Consensus 402 A~sGqG~v--~EalnlA---~LP~y~~GGvI~Vv~NNq~g~tT~~~~~rs~~~~s-d~Aka~-g~p~~~VdG~D~eAV~~ 474 (1021)
++||||.. +|.+.++ ++| +|.++.+- -|.+|...-..+..+.. .+.-++ +.|.+...-.|+.+++.
T Consensus 77 aTSg~Gl~lm~E~~~~a~~~e~P------~Viv~~~R-~gp~tg~p~~~~q~D~~~~~~~~hgd~~~ivl~p~~~QEa~d 149 (376)
T PRK08659 77 ATSGPGFSLMQENIGYAAMTETP------CVIVNVQR-GGPSTGQPTKPAQGDMMQARWGTHGDHPIIALSPSSVQECFD 149 (376)
T ss_pred ecCCCcHHHHHHHHHHHHHcCCC------EEEEEeec-CCCCCCCCCCcCcHHHHHHhcccCCCcCcEEEeCCCHHHHHH
Confidence 45789987 5888777 899 77777774 44433211011111221 122222 47777788889999999
Q ss_pred HHHHHHHHHHccCCCEEEEEeeeccCCCCCC
Q 001713 475 VCELAAEWRQTFHSDVVVDLVCYRRFGHNEI 505 (1021)
Q Consensus 475 a~~~A~e~rr~~~gPvlIe~vtYR~~GHne~ 505 (1021)
-+..|.+.+.+++-||++-..+| .+|+..
T Consensus 150 ~~~~Af~lAE~~~~PViv~~D~~--lsh~~~ 178 (376)
T PRK08659 150 LTIRAFNLAEKYRTPVIVLADEV--VGHMRE 178 (376)
T ss_pred HHHHHHHHHHHHCCCEEEEechH--hhCCcc
Confidence 99999999999999999999994 888743
No 180
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....
Probab=79.00 E-value=7.5 Score=40.15 Aligned_cols=93 Identities=9% Similarity=0.051 Sum_probs=61.0
Q ss_pred cEEEEEeCccccCCccHHHHHHHhcCCCCCCcccEEEEEEcCCcccccCCCCCcccccHHHHHhhcCccEEEEeCCCHHH
Q 001713 392 NMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQVAFTTDPMSGRSSQYCTDVAKALDAPIFHVNGDDMEA 471 (1021)
Q Consensus 392 ~v~v~~~GDgA~sGqG~v~EalnlA~LP~y~~GGvI~Vv~NNq~g~tT~~~~~rs~~~~sd~Aka~g~p~~~VdG~D~eA 471 (1021)
.++++..|=|+++.-.-++++ ...+.| +|+|+-.-..........+ ...+...+++.+.-...+|. +++.
T Consensus 66 ~v~~~~~GpG~~n~~~~l~~A-~~~~~P------vl~i~g~~~~~~~~~~~~q-~~~d~~~~~~~~~k~~~~v~--~~~~ 135 (172)
T PF02776_consen 66 GVVIVTSGPGATNALTGLANA-YADRIP------VLVITGQRPSAGEGRGAFQ-QEIDQQSLFRPVTKWSYRVT--SPDD 135 (172)
T ss_dssp EEEEEETTHHHHTTHHHHHHH-HHTT-E------EEEEEEESSGGGTTTTSTT-SSTHHHHHHGGGSSEEEEEC--SGGG
T ss_pred eEEEeecccchHHHHHHHhhc-ccceee------EEEEecccchhhhcccccc-cchhhcchhccccchhcccC--CHHH
Confidence 556666667777744555554 344999 9999887665443322111 12356677888887788885 5666
Q ss_pred HHHHHHHHHHHH-HccCCCEEEEE
Q 001713 472 VAHVCELAAEWR-QTFHSDVVVDL 494 (1021)
Q Consensus 472 V~~a~~~A~e~r-r~~~gPvlIe~ 494 (1021)
+..+++.|+..+ ....+||+|++
T Consensus 136 ~~~~~~~A~~~a~~~~~gPv~l~i 159 (172)
T PF02776_consen 136 LPEALDRAFRAATSGRPGPVYLEI 159 (172)
T ss_dssp HHHHHHHHHHHHHHCSTSEEEEEE
T ss_pred HHHHHHHHHHHhccCCCccEEEEc
Confidence 667777777777 66789999998
No 181
>cd07034 TPP_PYR_PFOR_IOR-alpha_like Pyrimidine (PYR) binding domain of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase alpha subunit (IOR-alpha), and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain, of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit (IOR-alpha), and related proteins, subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. Th
Probab=78.94 E-value=9.2 Score=38.72 Aligned_cols=90 Identities=16% Similarity=0.106 Sum_probs=56.5
Q ss_pred EEEEEeCccccCCccHHHHHHHhcCCCCCCcccEEEEEEcCCcccccCCCCCcccccHHHHHhhcC--ccEEEEeCCCHH
Q 001713 393 MAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQVAFTTDPMSGRSSQYCTDVAKALD--APIFHVNGDDME 470 (1021)
Q Consensus 393 v~v~~~GDgA~sGqG~v~EalnlA~LP~y~~GGvI~Vv~NNq~g~tT~~~~~rs~~~~sd~Aka~g--~p~~~VdG~D~e 470 (1021)
++++..|-|..+.-..++++.. .+.| +|+|+-+-...-..... . ....+ |....++ .+.+++ .|++
T Consensus 67 v~~~~~gpG~~n~~~~l~~a~~-~~~P------~v~i~g~~~~~~~~~~~-~-~~~~~-~~~~~~~~~~~~~~~--~~~~ 134 (160)
T cd07034 67 AMTATSGPGLNLMAEALYLAAG-AELP------LVIVVAQRPGPSTGLPK-P-DQSDL-MAARYGGHPWPVLAP--SSVQ 134 (160)
T ss_pred EEEeeCcchHHHHHHHHHHHHh-CCCC------EEEEEeeCCCCCCCCCC-c-CcHHH-HHHHhCCCCEEEEeC--CCHH
Confidence 7778888888774444555543 4899 89988654332111100 0 11111 2222233 555554 5899
Q ss_pred HHHHHHHHHHHHHHccCCCEEEEE
Q 001713 471 AVAHVCELAAEWRQTFHSDVVVDL 494 (1021)
Q Consensus 471 AV~~a~~~A~e~rr~~~gPvlIe~ 494 (1021)
++...++.|++.++.+++||+|-+
T Consensus 135 ~~~~~~~~A~~~a~~~~~Pv~l~~ 158 (160)
T cd07034 135 EAFDLALEAFELAEKYRLPVIVLS 158 (160)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEc
Confidence 999999999999999989999865
No 182
>COG1165 MenD 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [Coenzyme metabolism]
Probab=77.13 E-value=6.8 Score=47.70 Aligned_cols=108 Identities=19% Similarity=0.174 Sum_probs=70.1
Q ss_pred cccccceeehHHHHhHHhcCCCCCCCcEEEEEeCccccCCccHHHHHHHh--c---CCCCCCcccEEEEEEcCCccccc-
Q 001713 366 LEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHL--S---ALPNYSIGGTIHIVVNNQVAFTT- 439 (1021)
Q Consensus 366 lg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDgA~sGqG~v~Ealnl--A---~LP~y~~GGvI~Vv~NNq~g~tT- 439 (1021)
+.+.++-|+|+++|.+. -+++++||=||= |-.=.+ . ..|- +|+|+.||+=||-.
T Consensus 424 IDG~vSTA~Gi~~a~~~----------ptv~liGDLS~l-----hD~NgLl~~k~~~~~l-----tIvv~NNnGGgIF~~ 483 (566)
T COG1165 424 IDGTVSTALGIARATQK----------PTVALIGDLSFL-----HDLNGLLLLKKVPQPL-----TIVVVNNNGGGIFSL 483 (566)
T ss_pred cchhHHHHhhhhhhcCC----------ceEEEEechhhh-----hccchHhhcCCCCCCe-----EEEEEeCCCceeeee
Confidence 44667789999998663 389999999973 332222 2 3442 77777777777653
Q ss_pred -CCCCCc----------ccccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeeecc
Q 001713 440 -DPMSGR----------SSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYRR 499 (1021)
Q Consensus 440 -~~~~~r----------s~~~~sd~Aka~g~p~~~VdG~D~eAV~~a~~~A~e~rr~~~gPvlIe~vtYR~ 499 (1021)
|..+.. ..-++...|+.||+..-+++. +.....+...+- .-.|=.+||++|-|-
T Consensus 484 Lp~~~~~~~fe~~F~tPh~ldF~~la~~y~l~y~~~~s--~~~l~~~~~~~~----~~~g~~viEvkt~r~ 548 (566)
T COG1165 484 LPQAQSEPVFERLFGTPHGLDFAHLAATYGLEYHRPQS--WDELGEALDQAW----RRSGTTVIEVKTDRS 548 (566)
T ss_pred ccCCCCcchHHHhcCCCCCCCHHHHHHHhCccccccCc--HHHHHHHHhhhc----cCCCcEEEEEecChh
Confidence 211111 124688889999999998875 344444444443 335689999998764
No 183
>TIGR03845 sulfopyru_alph sulfopyruvate decarboxylase, alpha subunit. This model represents the alpha subunit, or the N-terminal region, of sulfopyruvate decarboxylase, an enzyme of coenzyme M biosynthesis. Coenzyme M is found almost exclusively in the methanogenic archaea. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=77.01 E-value=26 Score=36.18 Aligned_cols=92 Identities=14% Similarity=0.022 Sum_probs=57.5
Q ss_pred cEEEEEeCccccCCccHHHHHHHhcCCCCCCcccEEEEEEcCCc-ccccCCCCCcccccHHH-HHhhcCccEEEEeCCCH
Q 001713 392 NMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQV-AFTTDPMSGRSSQYCTD-VAKALDAPIFHVNGDDM 469 (1021)
Q Consensus 392 ~v~v~~~GDgA~sGqG~v~EalnlA~LP~y~~GGvI~Vv~NNq~-g~tT~~~~~rs~~~~sd-~Aka~g~p~~~VdG~D~ 469 (1021)
..++|..+=|..+.=.-++++....++| +|+|+-.-.. |-..+.. .....+.. .....++|...|+ ++
T Consensus 59 ~~~v~~~~sG~gn~~~~l~~a~~~~~~P------vl~i~g~rg~~~~~~~~q--~~~g~~~~~~l~~~~i~~~~i~--~~ 128 (157)
T TIGR03845 59 KPAILMQSSGLGNSINALASLNKTYGIP------LPILASWRGVYKEKIPAQ--IPMGRATPKLLDTLGIPYTIPR--EP 128 (157)
T ss_pred CcEEEEeCCcHHHHHHHHHHHHHcCCCC------EEEEEeccCCCCCCCccc--cchhhhhHHHHHHcCCCeEEeC--CH
Confidence 3456666555434233455666466999 9999854443 1111111 11112222 2355788988885 58
Q ss_pred HHHHHHHHHHHHHHHccCCCEEEEE
Q 001713 470 EAVAHVCELAAEWRQTFHSDVVVDL 494 (1021)
Q Consensus 470 eAV~~a~~~A~e~rr~~~gPvlIe~ 494 (1021)
+.+ .++..|+..+.+.++|+.|-+
T Consensus 129 e~~-~~i~~A~~~a~~~~gPv~il~ 152 (157)
T TIGR03845 129 EEA-KLIEKAISDAYENSRPVAALL 152 (157)
T ss_pred HHH-HHHHHHHHHHHhCCCCEEEEE
Confidence 888 999999999999999999865
No 184
>PF01855 POR_N: Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg; InterPro: IPR002880 This family includes the N-terminal region of the pyruvate ferredoxin oxidoreductase, corresponding to the first two structural domains. This region is involved in inter subunit contacts []. Pyruvate oxidoreductase (POR) catalyses the final step in the fermentation of carbohydrates in anaerobic microorganisms []. This involves the oxidative decarboxylation of pyruvate with the participation of thiamine followed by the transfer of an acetyl moiety to coenzyme A for the synthesis of acetyl-CoA []. The family also includes pyruvate flavodoxin oxidoreductase as encoded by the nifJ gene in cyanobacterium which is required for growth on molecular nitrogen when iron is limited [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2PDA_B 2C3Y_A 2C3P_B 2UZA_A 2C3U_B 2C42_A 1B0P_B 2C3M_A 2C3O_B 1KEK_B ....
Probab=76.17 E-value=6.9 Score=42.92 Aligned_cols=88 Identities=19% Similarity=0.282 Sum_probs=55.0
Q ss_pred cCCccHHH--HHHHhc---CCCCCCcccEEEEEEcCCc---ccccCCCCCcccccHHHHHhhcCccEEEEeCCCHHHHHH
Q 001713 403 FAGQGVVY--ETLHLS---ALPNYSIGGTIHIVVNNQV---AFTTDPMSGRSSQYCTDVAKALDAPIFHVNGDDMEAVAH 474 (1021)
Q Consensus 403 ~sGqG~v~--EalnlA---~LP~y~~GGvI~Vv~NNq~---g~tT~~~~~rs~~~~sd~Aka~g~p~~~VdG~D~eAV~~ 474 (1021)
++|+|..+ |.|-++ ++| +|+++.|-.. |.+|... -.|+-.+.+.+.+.+...|+.+++.
T Consensus 66 ts~~Gl~lm~e~l~~a~~~~~P------~V~~~~~R~g~~~g~~~~~~-------q~D~~~~~d~~~~vl~p~~~QEa~d 132 (230)
T PF01855_consen 66 TSGPGLNLMAEPLYWAAGTELP------IVIVVVQRAGPSPGLSTQPE-------QDDLMAARDSGWIVLAPSSPQEAYD 132 (230)
T ss_dssp EECCHHHHHCCCHHHHHHTT--------EEEEEEEB---SSSB--SB--------SHHHHHTTTSS-EEEE--SHHHHHH
T ss_pred ecCCcccccHhHHHHHHHcCCC------EEEEEEECCCCCCCCcCcCC-------hhHHHHHHhcCeEEEeCCCHHHHHH
Confidence 35688654 777666 999 7777776443 2223221 2344333355555556679999999
Q ss_pred HHHHHHHHHHccCCCEEEEEeeeccCCCCC
Q 001713 475 VCELAAEWRQTFHSDVVVDLVCYRRFGHNE 504 (1021)
Q Consensus 475 a~~~A~e~rr~~~gPvlIe~vtYR~~GHne 504 (1021)
-+..|.+.+.++.-||++-..+|+. .|..
T Consensus 133 ~~~~A~~lAe~~~~PViv~~Dg~~~-sh~~ 161 (230)
T PF01855_consen 133 MTLIAFNLAEKYQTPVIVLFDGFLC-SHSR 161 (230)
T ss_dssp HHHHHHHHHHHHTSEEEEEEECCCC-TC-E
T ss_pred HHHHHHHHHHHHCCCEEEEechhhh-cCcc
Confidence 9999999999999999999999886 2543
No 185
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=76.17 E-value=15 Score=38.02 Aligned_cols=92 Identities=12% Similarity=-0.009 Sum_probs=58.9
Q ss_pred cEEEEEeCccccCCccHHHHHHHhcCCCCCCcccEEEEEEcCCcccccCCCCCcccccHHHHHhhcCccEEEEeCCCHHH
Q 001713 392 NMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQVAFTTDPMSGRSSQYCTDVAKALDAPIFHVNGDDMEA 471 (1021)
Q Consensus 392 ~v~v~~~GDgA~sGqG~v~EalnlA~LP~y~~GGvI~Vv~NNq~g~tT~~~~~rs~~~~sd~Aka~g~p~~~VdG~D~eA 471 (1021)
.++++..|=|+++.-.-+.|+. ..++| +|+|.-+.....- .....-..+..++++.+---..+|+ +++.
T Consensus 65 ~v~~~t~GpG~~n~~~~l~~A~-~~~~P------vl~I~g~~~~~~~--~~~~~q~~d~~~~~~~~tk~~~~v~--~~~~ 133 (164)
T cd07039 65 GVCLGSSGPGAIHLLNGLYDAK-RDRAP------VLAIAGQVPTDEL--GTDYFQEVDLLALFKDVAVYNETVT--SPEQ 133 (164)
T ss_pred EEEEECCCCcHHHHHHHHHHHH-hcCCC------EEEEecCCccccc--CCCCCcccCHHHHHHHhhcEEEEeC--CHHH
Confidence 5666666777776333333332 12999 9999865553211 1111112256667777766666665 7888
Q ss_pred HHHHHHHHHHHHHccCCCEEEEE
Q 001713 472 VAHVCELAAEWRQTFHSDVVVDL 494 (1021)
Q Consensus 472 V~~a~~~A~e~rr~~~gPvlIe~ 494 (1021)
+..+++.|++.++...|||.|++
T Consensus 134 ~~~~i~~A~~~a~~~~GPV~l~i 156 (164)
T cd07039 134 LPELLDRAIRTAIAKRGVAVLIL 156 (164)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEe
Confidence 88888888888877789999997
No 186
>PRK13030 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=76.01 E-value=7.6 Score=51.63 Aligned_cols=113 Identities=16% Similarity=0.125 Sum_probs=72.5
Q ss_pred cCCcccccceeehHHHHhHHhcCCCCCCCcEEEEEeCccccCCccHHHHHHHhc--CCCCCCcccEEEEEEcCC-ccccc
Q 001713 363 PSHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS--ALPNYSIGGTIHIVVNNQ-VAFTT 439 (1021)
Q Consensus 363 pShlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDgA~sGqG~v~EalnlA--~LP~y~~GGvI~Vv~NNq-~g~tT 439 (1021)
..++|+....++|.+.+... .-+|.++|||.|---|+- --.|.. +.+ ++++|-+|. .++|-
T Consensus 467 ~~~MG~~g~~~~G~a~~~~~---------~~v~a~iGDgTf~HSG~~-al~~AV~~~~n------it~~IL~N~~tAMTG 530 (1159)
T PRK13030 467 LTQMGGEGVDWIGHAPFTET---------KHVFQNLGDGTYFHSGSL-AIRQAVAAGAN------ITYKILYNDAVAMTG 530 (1159)
T ss_pred eeccCccchhhceeccccCC---------CCEEEEeccchhhhcCHH-HHHHHHhcCCC------eEEEEEeCCcccccC
Confidence 35799999999999887321 238999999998745554 222222 777 777777777 58886
Q ss_pred C-CCCC-cccccHHHHHhhcCccEEEEeCCCHHH----------------HHHHHHHHHHHHHccCCCEEEEE
Q 001713 440 D-PMSG-RSSQYCTDVAKALDAPIFHVNGDDMEA----------------VAHVCELAAEWRQTFHSDVVVDL 494 (1021)
Q Consensus 440 ~-~~~~-rs~~~~sd~Aka~g~p~~~VdG~D~eA----------------V~~a~~~A~e~rr~~~gPvlIe~ 494 (1021)
- +... .+.+.++...++.|+.-+.|=-+||+. ...++++++ |+..|+.+|-.
T Consensus 531 gQp~~g~i~v~~i~~~~~a~Gv~~v~vvsddp~~~~~~~~~~~~~v~~r~~l~~vq~~l---~~~~GvsViI~ 600 (1159)
T PRK13030 531 GQPVDGSISVPQIARQVEAEGVSRIVVVSDEPEKYRGHHLPAGVTVHHRDELDAVQREL---RETPGVTVLIY 600 (1159)
T ss_pred CCCCCCCCCHHHHHHHHHhCCCcEEEEecCChhhccccccCCCcccccHHHHHHHHHHH---hcCCCcEEEEE
Confidence 2 2222 223334447789999888775566554 334455554 25678877754
No 187
>cd07034 TPP_PYR_PFOR_IOR-alpha_like Pyrimidine (PYR) binding domain of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase alpha subunit (IOR-alpha), and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain, of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit (IOR-alpha), and related proteins, subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. Th
Probab=75.60 E-value=31 Score=34.83 Aligned_cols=115 Identities=15% Similarity=0.151 Sum_probs=68.7
Q ss_pred ccEEecCccchHHHHHHHHhhccCCCCcceEehhhhhhhHhhHHHHHHHHHhhhhhhhcCccceEEEeCc-cCCCCCcCC
Q 001713 698 MFTVSNSSLSEFGVLGFELGYSMENPNSLVMWEAQFGDFANGAQVIFDQFVNSGESKWLRQSGLVVMLPH-GYDGQGPEH 776 (1021)
Q Consensus 698 ~~rV~nspLSE~~vlGfe~G~a~~g~~~lviwEaqFgDF~n~Aq~~iDqfi~s~~~kw~~~~~lV~~lPh-G~~G~GpeH 776 (1021)
..+++.+- .|.+..+.+-||+..+.+ ++ + ..-|.=+..+ ++.+.+. +..++||+++.-. +..+.+-.|
T Consensus 41 ~i~~i~~~-~E~~A~~~A~g~~r~~~~-v~-~-~~~gpG~~n~---~~~l~~a----~~~~~P~v~i~g~~~~~~~~~~~ 109 (160)
T cd07034 41 GGVVVQAE-SEHAAAEAAIGASAAGAR-AM-T-ATSGPGLNLM---AEALYLA----AGAELPLVIVVAQRPGPSTGLPK 109 (160)
T ss_pred CcEEEEeC-CHHHHHHHHHHHHhhCCc-EE-E-eeCcchHHHH---HHHHHHH----HhCCCCEEEEEeeCCCCCCCCCC
Confidence 46777777 999999999999998877 33 2 3334433334 5555432 2346999999743 222221101
Q ss_pred cCchhhHhhhccCCCCCcccCCCchhhhcccccCeEEEecCCHHHHHHHHHHHHhc--CCCCcEEEEe
Q 001713 777 SSARLERFLQMSDDNPYVIPEMDSTLRTQIQECNWQIVNVTTPANYFHVLRRQIHR--EFRKPLVVMS 842 (1021)
Q Consensus 777 Ss~r~Er~Lql~~e~~~~~~~ipg~~~~~~~~~Nl~Vv~pstpad~fhlLrrqi~~--~~~kPliv~~ 842 (1021)
.. .+.+-|.. .+.. -+-+..+++|++...+++++++. ..+.|++++.
T Consensus 110 ~~--~~~~~~~~-----~~~~------------~~~~~~~~~~~~~~~~~~~A~~~a~~~~~Pv~l~~ 158 (160)
T cd07034 110 PD--QSDLMAAR-----YGGH------------PWPVLAPSSVQEAFDLALEAFELAEKYRLPVIVLS 158 (160)
T ss_pred cC--cHHHHHHH-----hCCC------------CEEEEeCCCHHHHHHHHHHHHHHHHHhCCCEEEEc
Confidence 10 11110100 0111 26677789999999999998863 3457998864
No 188
>PRK09193 indolepyruvate ferredoxin oxidoreductase; Validated
Probab=75.43 E-value=11 Score=50.21 Aligned_cols=113 Identities=17% Similarity=0.129 Sum_probs=74.9
Q ss_pred cCCcccccceeehHHHHhHHhcCCCCCCCcEEEEEeCccccCCccHHHHHHHhc--CCCCCCcccEEEEEEcCC-ccccc
Q 001713 363 PSHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS--ALPNYSIGGTIHIVVNNQ-VAFTT 439 (1021)
Q Consensus 363 pShlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDgA~sGqG~v~EalnlA--~LP~y~~GGvI~Vv~NNq-~g~tT 439 (1021)
..++|+....++|.+.+.+. .-+|.++|||.|---|+-- -.|.. +.+ ++++|-.|. .++|-
T Consensus 480 ~~~MG~eg~~~~G~a~f~~~---------~hv~a~iGDgTffHSG~~a-l~~AV~~~~n------it~~IL~N~~vAMTG 543 (1165)
T PRK09193 480 FTQMGGEGVPWIGQAPFTDE---------KHVFQNLGDGTYFHSGLLA-IRAAVAAGVN------ITYKILYNDAVAMTG 543 (1165)
T ss_pred eeccCCcchhhceeccccCC---------CcEEEEeccccchhcCHHH-HHHHHhcCCC------eEEEEEeCCcccccC
Confidence 36789988889998886221 2399999999987556543 33322 777 666666665 68886
Q ss_pred C-CC-CCcccccHHHHHhhcCccEEEEeCCCHHHH-----------------HHHHHHHHHHHHccCCCEEEEE
Q 001713 440 D-PM-SGRSSQYCTDVAKALDAPIFHVNGDDMEAV-----------------AHVCELAAEWRQTFHSDVVVDL 494 (1021)
Q Consensus 440 ~-~~-~~rs~~~~sd~Aka~g~p~~~VdG~D~eAV-----------------~~a~~~A~e~rr~~~gPvlIe~ 494 (1021)
- +. ...+...+.+..++.|+.-+.|=-+||+.. ..++++++ |+..|+.+|-.
T Consensus 544 gQ~~~g~~~~~~i~~~~~a~GV~~v~vv~ddp~~~~~~~~~~~~v~~~~R~~l~~vq~~l---r~~~GvsViI~ 614 (1165)
T PRK09193 544 GQPVDGGLSVPQITRQLAAEGVKRIVVVTDEPEKYDGVARLAPGVTVHHRDELDAVQREL---REIPGVTVLIY 614 (1165)
T ss_pred CCCCCCCcchhhHHHHHHhCCCCEEEEeCCChhhhhhccccCcCcccccHHHHHHHHHHH---hcCCCcEEEEE
Confidence 2 22 223557788899999998777766666655 44455554 36778877754
No 189
>PRK09627 oorA 2-oxoglutarate-acceptor oxidoreductase subunit OorA; Reviewed
Probab=72.88 E-value=12 Score=44.05 Aligned_cols=92 Identities=16% Similarity=0.165 Sum_probs=64.1
Q ss_pred ccCCccHHH--HHHHhc---CCCCCCcccEEEEEEcCC---cccccCCCCCcccccHHHHHhhc-CccEEEEeCCCHHHH
Q 001713 402 SFAGQGVVY--ETLHLS---ALPNYSIGGTIHIVVNNQ---VAFTTDPMSGRSSQYCTDVAKAL-DAPIFHVNGDDMEAV 472 (1021)
Q Consensus 402 A~sGqG~v~--EalnlA---~LP~y~~GGvI~Vv~NNq---~g~tT~~~~~rs~~~~sd~Aka~-g~p~~~VdG~D~eAV 472 (1021)
++||+|..+ |.+.++ ++| +|.++.+-. .|+-|.... + .-...+...+ +.|.+.+.-.|+.++
T Consensus 76 aTSg~G~~lm~E~~~~a~~~e~P------~V~~~~~R~GpstG~p~~~~q--~-D~~~~~~~~hgd~~~ivl~p~~~qEa 146 (375)
T PRK09627 76 ASSGPGISLKAEQIGLGFIAEIP------LVIVNVMRGGPSTGLPTRVAQ--G-DVNQAKNPTHGDFKSIALAPGSLEEA 146 (375)
T ss_pred ecCCchHHHHhhHHHHHHhccCC------EEEEEeccCCCcCCCCCccch--H-HHHHHhcCCCCCcCcEEEeCCCHHHH
Confidence 457899876 998888 999 777666543 344443311 1 1111122222 366677788999999
Q ss_pred HHHHHHHHHHHHccCCCEEEEEeeeccCCCCC
Q 001713 473 AHVCELAAEWRQTFHSDVVVDLVCYRRFGHNE 504 (1021)
Q Consensus 473 ~~a~~~A~e~rr~~~gPvlIe~vtYR~~GHne 504 (1021)
+.-+..|.+.+.++.-||++-..+ + .+|+.
T Consensus 147 ~d~t~~Af~lAE~~~~PViv~~D~-~-lsh~~ 176 (375)
T PRK09627 147 YTETVRAFNLAERFMTPVFLLLDE-T-VGHMY 176 (375)
T ss_pred HHHHHHHHHHHHHHcCceEEecch-H-HhCCe
Confidence 999999999999999999999988 3 37764
No 190
>PRK07119 2-ketoisovalerate ferredoxin reductase; Validated
Probab=69.01 E-value=24 Score=41.07 Aligned_cols=107 Identities=13% Similarity=0.122 Sum_probs=72.1
Q ss_pred ccceeehHHHHhHHhcCCCCCCCcEEEEEeCccccCCccHH--HHHHHhc---CCCCCCcccEEEEEEcCCcccccCCCC
Q 001713 369 VDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVV--YETLHLS---ALPNYSIGGTIHIVVNNQVAFTTDPMS 443 (1021)
Q Consensus 369 ~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDgA~sGqG~v--~EalnlA---~LP~y~~GGvI~Vv~NNq~g~tT~~~~ 443 (1021)
.+.+|+|+++|=. -+++.. ||+|.. +|.|++| .+| +++++.+=. |-+|-.
T Consensus 60 A~~~a~GAs~aG~-----------Ra~taT-----Sg~Gl~lm~E~l~~a~~~e~P------~v~v~v~R~-~p~~g~-- 114 (352)
T PRK07119 60 AINMVYGAAATGK-----------RVMTSS-----SSPGISLKQEGISYLAGAELP------CVIVNIMRG-GPGLGN-- 114 (352)
T ss_pred HHHHHHHHHhhCC-----------CEEeec-----CcchHHHHHHHHHHHHHccCC------EEEEEeccC-CCCCCC--
Confidence 3456777777632 233333 678875 5999988 999 777777643 443321
Q ss_pred CcccccHHHHHhh-c-----CccEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEeeeccCCCCC
Q 001713 444 GRSSQYCTDVAKA-L-----DAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYRRFGHNE 504 (1021)
Q Consensus 444 ~rs~~~~sd~Aka-~-----g~p~~~VdG~D~eAV~~a~~~A~e~rr~~~gPvlIe~vtYR~~GHne 504 (1021)
+...-.|+--+ + +.|.+...-.|+.+++.-+..|.+.+.+.+-||++-..+| .+|+.
T Consensus 115 --t~~eq~D~~~~~~~~ghgd~~~~vl~p~~~qEa~d~~~~Af~lAE~~~~PViv~~D~~--lsh~~ 177 (352)
T PRK07119 115 --IQPSQGDYFQAVKGGGHGDYRLIVLAPSSVQEMVDLTMLAFDLADKYRNPVMVLGDGV--LGQMM 177 (352)
T ss_pred --CcchhHHHHHHHhcCCCCCcceEEEeCCCHHHHHHHHHHHHHHHHHhCCCEEEEcchh--hhCce
Confidence 11222344222 1 4667777888999999999999999999999999999995 46753
No 191
>KOG4166 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=67.81 E-value=15 Score=43.45 Aligned_cols=152 Identities=23% Similarity=0.257 Sum_probs=78.3
Q ss_pred cCCCHHHHHHHhcCCCCCCCCCCcccCCCCccccccccCCCCCCCCcceeeeeccccCCccccccee-ehHHHHhHHhcC
Q 001713 307 VRKPLRQIFSEFSGGTRPVDEVGLYTGTGDVKYHLGTSYDRPTRGGKRIHLSLVANPSHLEAVDPVV-IGKTRAKQYYSN 385 (1021)
Q Consensus 307 ~g~~~~~if~Ef~G~~~~~~~G~~~gGsgDvkyHlg~s~~~~~~~g~~i~l~l~~npShlg~~~PvA-~G~A~A~q~~~~ 385 (1021)
+|+.=.+||.|++-+..-..- .||.|.--++.|-+ +.+++|...++|-- .|+..|.+-+..
T Consensus 89 vg~tGg~If~emm~rqnV~tV-FgYPGGAilpv~dA-----------------i~rS~~f~fvLPrHEQgaghaAegYaR 150 (675)
T KOG4166|consen 89 VGRTGGDIFVEMMERQNVETV-FGYPGGAILPVHDA-----------------ITRSSSFRFVLPRHEQGAGHAAEGYAR 150 (675)
T ss_pred cCCchhHHHHHHHHhcCCceE-eecCCcceeehHhh-----------------hhcCccccccccccccccchhhhhhhh
Confidence 366677888888876542211 01222222333321 23444455555421 233333322211
Q ss_pred CCCCCCcEEEEEeCccccCCccHHHHHHH--hc-CCCCCCcccEEEEEEcCCc---ccccCCCCCcccccHHHHHhhcCc
Q 001713 386 DMDRTKNMAVLIHGDGSFAGQGVVYETLH--LS-ALPNYSIGGTIHIVVNNQV---AFTTDPMSGRSSQYCTDVAKALDA 459 (1021)
Q Consensus 386 d~~~~~~v~v~~~GDgA~sGqG~v~Ealn--lA-~LP~y~~GGvI~Vv~NNq~---g~tT~~~~~rs~~~~sd~Aka~g~ 459 (1021)
. .++..|+++..|-||++ +---|. +| ..| .||.--|. +|.|+. .-..++..+.+++
T Consensus 151 ~-sgKPGvvlvTSGPGATN----vvtp~ADAlaDg~P--------lVvftGQVptsaIGtDA---FQEadiVgisRSc-- 212 (675)
T KOG4166|consen 151 S-SGKPGVVLVTSGPGATN----VVTPLADALADGVP--------LVVFTGQVPTSAIGTDA---FQEADIVGISRSC-- 212 (675)
T ss_pred h-cCCCcEEEEecCCCccc----ccchhhHHhhcCCc--------EEEEecccchhhcccch---hccCCeeeeeecc--
Confidence 1 12347999999999987 222222 22 555 44445554 333332 1112222222221
Q ss_pred cEEEEeCCCHHHHHHHHHHHHHHHHccC-CCEEEEE
Q 001713 460 PIFHVNGDDMEAVAHVCELAAEWRQTFH-SDVVVDL 494 (1021)
Q Consensus 460 p~~~VdG~D~eAV~~a~~~A~e~rr~~~-gPvlIe~ 494 (1021)
.-..|==.|++.+-.-..+|.+.+-.++ ||||+|+
T Consensus 213 TKwNvmVkdVedlPrrI~EAFeiATSGRPGPVLVDl 248 (675)
T KOG4166|consen 213 TKWNVMVKDVEDLPRRIEEAFEIATSGRPGPVLVDL 248 (675)
T ss_pred ceeheeeecHHHhhHHHHHHhhhhccCCCCCeEeeC
Confidence 1112223589999999999999988875 8999998
No 192
>TIGR03710 OAFO_sf 2-oxoacid:acceptor oxidoreductase, alpha subunit. The genes for this enzyme in Prevotella intermedia 17, Persephonella marina EX-H1 and Picrophilus torridus DSM 9790 are in close proximity to a variety of TCA cycle genes. Persephonella marina and P. torridus are believed to encode complete TCA cycles, and none of these contains the lipoate-based 2-oxoglutarate dehydrogenase (E1/E2/E3) system. That system is presumed to be replaced by this one. In fact, the lipoate system is absent in most organisms possessing a member of this family, providing additional circumstantial evidence that many of these enzymes are capable of acting as 2-oxoglutarate dehydrogenases and supporting flux through TCA cycles in either the forward or reverse directions.
Probab=67.32 E-value=19 Score=44.53 Aligned_cols=90 Identities=19% Similarity=0.200 Sum_probs=62.4
Q ss_pred ccCCccH--HHHHHHhc---CCCCCCcccEEEEEEcCCcccccCCCCCcccccHHHHHhhc-----CccEEEEeCCCHHH
Q 001713 402 SFAGQGV--VYETLHLS---ALPNYSIGGTIHIVVNNQVAFTTDPMSGRSSQYCTDVAKAL-----DAPIFHVNGDDMEA 471 (1021)
Q Consensus 402 A~sGqG~--v~EalnlA---~LP~y~~GGvI~Vv~NNq~g~tT~~~~~rs~~~~sd~Aka~-----g~p~~~VdG~D~eA 471 (1021)
+++|+|. .+|.|.+| .+| +|.++.| .-|.+|...- ++ .-.|+-.+. +.|.+.+...|+.+
T Consensus 266 aTSg~Gl~lm~E~l~~a~~~~~P------~Vi~~~~-R~gpstg~~t-~~--eq~D~~~~~~~~hgd~~~ivl~p~~~qE 335 (562)
T TIGR03710 266 ATSGPGFALMTEALGLAGMTETP------LVIVDVQ-RGGPSTGLPT-KT--EQSDLLFALYGGHGEFPRIVLAPGSPEE 335 (562)
T ss_pred cCCCCChhHhHHHHhHHHhccCC------EEEEEcc-cCCCCCCCCC-Cc--cHHHHHHHhcCCCCCcCceEEcCCCHHH
Confidence 4567886 46999888 899 6665554 4555553211 11 112321122 35667777889999
Q ss_pred HHHHHHHHHHHHHccCCCEEEEEeeeccCCCC
Q 001713 472 VAHVCELAAEWRQTFHSDVVVDLVCYRRFGHN 503 (1021)
Q Consensus 472 V~~a~~~A~e~rr~~~gPvlIe~vtYR~~GHn 503 (1021)
++..+.+|.+.+.++.-||++-..+|. +|+
T Consensus 336 a~d~~~~Af~lAe~~~~PViv~~D~~l--~~~ 365 (562)
T TIGR03710 336 CFYLAIEAFNLAEKYQTPVIVLSDQYL--ANS 365 (562)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEechHH--hCC
Confidence 999999999999999999999999995 554
No 193
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=60.54 E-value=50 Score=33.10 Aligned_cols=113 Identities=21% Similarity=0.354 Sum_probs=65.4
Q ss_pred ccEEecCccchHHHHHHHHhhccCCCC-cceEehhhhh-hhHhhHHHHHHHHHhhhhhhhcCccceEEEeCc-cCCCCCc
Q 001713 698 MFTVSNSSLSEFGVLGFELGYSMENPN-SLVMWEAQFG-DFANGAQVIFDQFVNSGESKWLRQSGLVVMLPH-GYDGQGP 774 (1021)
Q Consensus 698 ~~rV~nspLSE~~vlGfe~G~a~~g~~-~lviwEaqFg-DF~n~Aq~~iDqfi~s~~~kw~~~~~lV~~lPh-G~~G~Gp 774 (1021)
.++++.+ ..|.+.++++.||+..+-+ .+++ .+.| -|.|. +..+.. -|..+.||+++.-. +..+.+.
T Consensus 34 ~~~~i~~-~~E~~A~~~A~g~~~~~~~~~v~~--~~~gpG~~n~----~~~l~~----A~~~~~Pll~i~~~~~~~~~~~ 102 (155)
T cd07035 34 GIRYILV-RHEQGAVGMADGYARATGKPGVVL--VTSGPGLTNA----VTGLAN----AYLDSIPLLVITGQRPTAGEGR 102 (155)
T ss_pred CCEEEEe-CCHHHHHHHHHHHHHHHCCCEEEE--EcCCCcHHHH----HHHHHH----HHhhCCCEEEEeCCCccccccC
Confidence 3566654 4999999999999999665 3332 4422 23332 333322 23347899999754 3333222
Q ss_pred CCcC--chhhHhhhccCCCCCcccCCCchhhhcccccCeEEEecCCHHHHHHHHHHHHhcCC---CCcEEEEee
Q 001713 775 EHSS--ARLERFLQMSDDNPYVIPEMDSTLRTQIQECNWQIVNVTTPANYFHVLRRQIHREF---RKPLVVMSP 843 (1021)
Q Consensus 775 eHSs--~r~Er~Lql~~e~~~~~~~ipg~~~~~~~~~Nl~Vv~pstpad~fhlLrrqi~~~~---~kPliv~~p 843 (1021)
.+-+ ...+-+ ..+ +.+ ...++++++....+.++++.-. +.|+.+.-|
T Consensus 103 ~~~q~~d~~~~~-----------~~~----------~~~-~~~i~~~~~~~~~i~~A~~~a~~~~~gPv~l~ip 154 (155)
T cd07035 103 GAFQEIDQVALF-----------RPI----------TKW-AYRVTSPEEIPEALRRAFRIALSGRPGPVALDLP 154 (155)
T ss_pred CcccccCHHHHH-----------HHH----------hce-EEEcCCHHHHHHHHHHHHHHhcCCCCCcEEEEec
Confidence 2111 111111 111 123 4556899999999999987522 569888655
No 194
>PRK09622 porA pyruvate flavodoxin oxidoreductase subunit alpha; Reviewed
Probab=58.85 E-value=47 Score=39.51 Aligned_cols=87 Identities=16% Similarity=0.117 Sum_probs=60.3
Q ss_pred ccCCccHH--HHHHHhc---CCCCCCcccEEEEEEcCCcccccCCCCCcccccHHHHHhhcCccEEEEeCCCHHHHHHHH
Q 001713 402 SFAGQGVV--YETLHLS---ALPNYSIGGTIHIVVNNQVAFTTDPMSGRSSQYCTDVAKALDAPIFHVNGDDMEAVAHVC 476 (1021)
Q Consensus 402 A~sGqG~v--~EalnlA---~LP~y~~GGvI~Vv~NNq~g~tT~~~~~rs~~~~sd~Aka~g~p~~~VdG~D~eAV~~a~ 476 (1021)
+++|+|.. +|.|-++ .+| +|+++.|=..+-+.+.. .+-.|.-.+-+...+.+...|+.+++..+
T Consensus 85 aTS~~Gl~lm~E~l~~aa~~~~P------~V~~~~~R~~~~~~~i~-----~d~~D~~~~r~~g~ivl~p~s~QEa~d~~ 153 (407)
T PRK09622 85 ATSSQGLALMVEVLYQASGMRLP------IVLNLVNRALAAPLNVN-----GDHSDMYLSRDSGWISLCTCNPQEAYDFT 153 (407)
T ss_pred ecCcchHHHHhhHHHHHHHhhCC------EEEEEeccccCCCcCCC-----chHHHHHHHhcCCeEEEeCCCHHHHHHHH
Confidence 35778875 4888888 999 88888877653221111 12223322223335556777999999999
Q ss_pred HHHHHHHHcc--CCCEEEEEeeecc
Q 001713 477 ELAAEWRQTF--HSDVVVDLVCYRR 499 (1021)
Q Consensus 477 ~~A~e~rr~~--~gPvlIe~vtYR~ 499 (1021)
..|.+.+.+. .-||++-..+|+.
T Consensus 154 ~~Af~lAE~~~~~~Pviv~~Dg~~~ 178 (407)
T PRK09622 154 LMAFKIAEDQKVRLPVIVNQDGFLC 178 (407)
T ss_pred HHHHHHHHHhccCCCEEEEechhhh
Confidence 9999999888 8999999888763
No 195
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=57.89 E-value=42 Score=39.68 Aligned_cols=71 Identities=20% Similarity=0.271 Sum_probs=56.2
Q ss_pred CCCCCeEEEEeechhHHHHHHHHHHcCCCcEEEEEecccCCCCHHHHHHHHHcCCCc-eEEEEecCCcccchHh
Q 001713 888 LEEGIRRLILCSGKVYYELYEERKKHSASDIAICRVEQLCPFPYDLVQRELKRYPNA-EVVWSQEEPMNMGAYT 960 (1021)
Q Consensus 888 ~~~g~~~~Iv~~Gk~~~~l~~a~~~~~~~~v~ii~le~L~Pfp~~~i~~~l~k~~~~-~~vwvqEe~~n~G~~~ 960 (1021)
...|.+++++..|+.=+...+-++.. +.++.+++.++=.|+|-+.|.+.|++.+.+ -+.++|-|.-+ |+-.
T Consensus 77 ~~pgdkVLv~~nG~FG~R~~~ia~~~-g~~v~~~~~~wg~~v~p~~v~~~L~~~~~~~~V~~vH~ETST-Gvln 148 (383)
T COG0075 77 VEPGDKVLVVVNGKFGERFAEIAERY-GAEVVVLEVEWGEAVDPEEVEEALDKDPDIKAVAVVHNETST-GVLN 148 (383)
T ss_pred cCCCCeEEEEeCChHHHHHHHHHHHh-CCceEEEeCCCCCCCCHHHHHHHHhcCCCccEEEEEeccCcc-cccC
Confidence 45677888888888877777766654 488999999999999999999999999988 56667766554 4443
No 196
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....
Probab=56.11 E-value=60 Score=33.46 Aligned_cols=122 Identities=14% Similarity=0.152 Sum_probs=76.8
Q ss_pred ccEEecCccchHHHHHHHHhhccCCCCcceEehhhhh-hhHhhHHHHHHHHHhhhhhhhcCccceEEEeCc-c--CCCCC
Q 001713 698 MFTVSNSSLSEFGVLGFELGYSMENPNSLVMWEAQFG-DFANGAQVIFDQFVNSGESKWLRQSGLVVMLPH-G--YDGQG 773 (1021)
Q Consensus 698 ~~rV~nspLSE~~vlGfe~G~a~~g~~~lviwEaqFg-DF~n~Aq~~iDqfi~s~~~kw~~~~~lV~~lPh-G--~~G~G 773 (1021)
..+++. ...|.+...++.||+..+-+|-++ =.+.| -+.|.. +.-..-|..+.||+++.-. + ..+++
T Consensus 39 ~i~~i~-~~~E~~A~~~A~g~ar~~g~~~v~-~~~~GpG~~n~~--------~~l~~A~~~~~Pvl~i~g~~~~~~~~~~ 108 (172)
T PF02776_consen 39 GIRFIP-VRHEQGAAFMADGYARATGRPGVV-IVTSGPGATNAL--------TGLANAYADRIPVLVITGQRPSAGEGRG 108 (172)
T ss_dssp TSEEEE--SSHHHHHHHHHHHHHHHSSEEEE-EEETTHHHHTTH--------HHHHHHHHTT-EEEEEEEESSGGGTTTT
T ss_pred ceeeec-ccCcchhHHHHHHHHHhhccceEE-EeecccchHHHH--------HHHhhcccceeeEEEEecccchhhhccc
Confidence 456666 679999999999999877666552 12222 234433 2211234447899988754 3 35666
Q ss_pred cCCcCchhhHhhhccCCCCCcccCCCchhhhcccccCeEEEecCCHHHHHHHHHHHHhc---CCCCcEEEEeeccccCCc
Q 001713 774 PEHSSARLERFLQMSDDNPYVIPEMDSTLRTQIQECNWQIVNVTTPANYFHVLRRQIHR---EFRKPLVVMSPKNLLRHK 850 (1021)
Q Consensus 774 peHSs~r~Er~Lql~~e~~~~~~~ipg~~~~~~~~~Nl~Vv~pstpad~fhlLrrqi~~---~~~kPliv~~pK~Llr~~ 850 (1021)
..|......++++ .+ --....+++|.+....|+++++. ..+.|+.+--|+.++..+
T Consensus 109 ~~q~~~d~~~~~~----------~~-----------~k~~~~v~~~~~~~~~~~~A~~~a~~~~~gPv~l~ip~dv~~~~ 167 (172)
T PF02776_consen 109 AFQQEIDQQSLFR----------PV-----------TKWSYRVTSPDDLPEALDRAFRAATSGRPGPVYLEIPQDVQEAE 167 (172)
T ss_dssp STTSSTHHHHHHG----------GG-----------SSEEEEECSGGGHHHHHHHHHHHHHHCSTSEEEEEEEHHHHTSE
T ss_pred ccccchhhcchhc----------cc-----------cchhcccCCHHHHHHHHHHHHHHhccCCCccEEEEcChhHhhCc
Confidence 7773333555433 11 12356678999999999988763 458899999999888654
No 197
>PRK13029 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=55.39 E-value=36 Score=45.58 Aligned_cols=114 Identities=15% Similarity=0.119 Sum_probs=70.3
Q ss_pred ccCCcccccceeehHHHHhHHhcCCCCCCCcEEEEEeCccccCCccHHHHHHHhc--CCCCCCcccEEEEEEcCC-cccc
Q 001713 362 NPSHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS--ALPNYSIGGTIHIVVNNQ-VAFT 438 (1021)
Q Consensus 362 npShlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDgA~sGqG~v~EalnlA--~LP~y~~GGvI~Vv~NNq-~g~t 438 (1021)
...++|+.....+|.+.+.+. .-+|.++|||.|.--|+-- -.|.- +.+ ++++|-.|. .++|
T Consensus 493 ~~~~MGgeg~~~~G~a~f~~~---------~hv~aniGDgTffHSG~~a-lr~AV~~~~n------it~kIL~N~avAMT 556 (1186)
T PRK13029 493 GFSQMGGEGVAWIGQMPFSRR---------RHVFQNLGDGTYFHSGLLA-IRQAIAAGVN------ITYKILYNDAVAMT 556 (1186)
T ss_pred eeeccCcchhhheeecccCCC---------CCEEEEeccccchhcCHHH-HHHHHhcCCC------EEEEEEeCcchhcc
Confidence 346789988889998877321 2399999999987555543 22322 777 666666666 5888
Q ss_pred cC-CCCC-cccccHHHHHhhcCccEEEEeCCCHHHH-----------------HHHHHHHHHHHHccCCCEEEEE
Q 001713 439 TD-PMSG-RSSQYCTDVAKALDAPIFHVNGDDMEAV-----------------AHVCELAAEWRQTFHSDVVVDL 494 (1021)
Q Consensus 439 T~-~~~~-rs~~~~sd~Aka~g~p~~~VdG~D~eAV-----------------~~a~~~A~e~rr~~~gPvlIe~ 494 (1021)
-- +... -+.+.++...++.|+.-+.|=-+||+.. ..++++++ |+..|+.+|-.
T Consensus 557 GgQp~~G~~~v~~i~~~~~a~GV~~v~vv~d~p~~~~~~~~~~~gv~~~~R~~l~~vq~~l---r~~~GvsViI~ 628 (1186)
T PRK13029 557 GGQPVDGVLTVPQIARQVHAEGVRRIVVVTDEPGKYRGVARLPAGVTVHHRDELDAVQREL---REVPGVSVLIY 628 (1186)
T ss_pred CCCCCCCcCCHHHHHHHHHhCCccEEEEeCCCccccccccccCCccccccHHHHHHHHHHH---hcCCCcEEEEE
Confidence 62 2222 2233444477999998666633455333 44444444 35678877643
No 198
>COG0674 PorA Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit [Energy production and conversion]
Probab=54.86 E-value=49 Score=38.83 Aligned_cols=87 Identities=23% Similarity=0.303 Sum_probs=63.2
Q ss_pred ccCCccH--HHHHHHhc---CCCCCCcccEEEEEEcCCcccccCCCCCcccccHHHH--HhhcCccEEEEeCCCHHHHHH
Q 001713 402 SFAGQGV--VYETLHLS---ALPNYSIGGTIHIVVNNQVAFTTDPMSGRSSQYCTDV--AKALDAPIFHVNGDDMEAVAH 474 (1021)
Q Consensus 402 A~sGqG~--v~EalnlA---~LP~y~~GGvI~Vv~NNq~g~tT~~~~~rs~~~~sd~--Aka~g~p~~~VdG~D~eAV~~ 474 (1021)
+++|||. .+|.|-+| .+| +|+++.|....-+-.+-.. +-.|+ ++--|+|.+... |+.+++.
T Consensus 76 aTSg~Gl~Lm~E~l~~a~~~~~P------~Vi~~~~R~~ps~g~p~~~----dq~D~~~~r~~g~~~~~~~--s~qEa~d 143 (365)
T COG0674 76 ATSGQGLLLMAEALGLAAGTETP------LVIVVAQRPLPSTGLPIKG----DQSDLMAARDTGFPILVSA--SVQEAFD 143 (365)
T ss_pred ecCCccHHHHHHHHHHHHhccCC------eEEEEeccCcCCCcccccc----cHHHHHHHHccCceEEeec--cHHHHHH
Confidence 3456775 56988888 999 7777777665444332211 22233 233388988877 8999999
Q ss_pred HHHHHHHHHHccCCCEEEEEeeeccC
Q 001713 475 VCELAAEWRQTFHSDVVVDLVCYRRF 500 (1021)
Q Consensus 475 a~~~A~e~rr~~~gPvlIe~vtYR~~ 500 (1021)
-+-.|...+.+..-|+++-...|+..
T Consensus 144 ~t~~Af~iAe~~~~Pvi~~~D~~~~~ 169 (365)
T COG0674 144 LTLLAFNIAEKVLTPVIVLLDGFLAS 169 (365)
T ss_pred HHHHHHHHHHHhcCCEEEeeccchhc
Confidence 99999999999999999999888764
No 199
>PRK08611 pyruvate oxidase; Provisional
Probab=52.21 E-value=52 Score=40.77 Aligned_cols=92 Identities=9% Similarity=0.087 Sum_probs=57.5
Q ss_pred cEEEEEeCccccCCccHHHHHHHhcCCCCCCcccEEEEEEcCCcccccCCCCCcccccHHHHHhhcCccEEEEeCCCHHH
Q 001713 392 NMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQVAFTTDPMSGRSSQYCTDVAKALDAPIFHVNGDDMEA 471 (1021)
Q Consensus 392 ~v~v~~~GDgA~sGqG~v~EalnlA~LP~y~~GGvI~Vv~NNq~g~tT~~~~~rs~~~~sd~Aka~g~p~~~VdG~D~eA 471 (1021)
.++++..|=|+++.-.-++||. ..+.| +|+|+-.-....... ...-..+..++++.+---...| ++++.
T Consensus 70 gv~~~t~GPG~~N~l~gla~A~-~~~~P------vl~ItG~~~~~~~~~--~~~q~~d~~~l~~~itk~~~~v--~~~~~ 138 (576)
T PRK08611 70 GVCLSIGGPGAIHLLNGLYDAK-MDHVP------VLALAGQVTSDLLGT--DFFQEVNLEKMFEDVAVYNHQI--MSAEN 138 (576)
T ss_pred eEEEECCCCcHHHHHHHHHHHh-hcCCC------EEEEecCCcccccCC--CCccccCHHHHhhcccceeEEe--CCHHH
Confidence 5666667888887444444433 23999 999986544321111 1111123445555554444444 47888
Q ss_pred HHHHHHHHHHHHHccCCCEEEEE
Q 001713 472 VAHVCELAAEWRQTFHSDVVVDL 494 (1021)
Q Consensus 472 V~~a~~~A~e~rr~~~gPvlIe~ 494 (1021)
+..++..|+..+....|||+|++
T Consensus 139 ~~~~l~~A~~~A~~~~GPV~l~i 161 (576)
T PRK08611 139 LPEIVNQAIRTAYEKKGVAVLTI 161 (576)
T ss_pred HHHHHHHHHHHHhhCCCCEEEEe
Confidence 88888888888888889999998
No 200
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=50.14 E-value=36 Score=35.30 Aligned_cols=94 Identities=11% Similarity=0.021 Sum_probs=51.9
Q ss_pred cEEEEEeCccccCCccHHHHHHHhcCCCCCCcccEEEEEEcCCcccccCCCCCcccccHHHHHhhcCccEEEE-eCCC--
Q 001713 392 NMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQVAFTTDPMSGRSSQYCTDVAKALDAPIFHV-NGDD-- 468 (1021)
Q Consensus 392 ~v~v~~~GDgA~sGqG~v~EalnlA~LP~y~~GGvI~Vv~NNq~g~tT~~~~~rs~~~~sd~Aka~g~p~~~V-dG~D-- 468 (1021)
.++++..|=|++++-.-++|+. ..+.| +|+|+-+-..... .....-..+...+.+.+---..+| +..+
T Consensus 62 gv~~~t~GpG~~n~~~gl~~A~-~~~~P------vl~i~g~~~~~~~--~~~~~q~~d~~~l~~~vtk~~~~v~~~~~~~ 132 (162)
T cd07037 62 VAVVCTSGTAVANLLPAVVEAY-YSGVP------LLVLTADRPPELR--GTGANQTIDQVGLFGDYVRWSVDLPPPEDDD 132 (162)
T ss_pred EEEEECCchHHHHHhHHHHHHH-hcCCC------EEEEECCCCHHhc--CCCCCcccchhhhccceeeEEEecCCcccch
Confidence 5666666777777555555544 23899 8888864332211 111111122333444443334445 3333
Q ss_pred -HHHHHHHHHHHHHHHHccC-CCEEEEE
Q 001713 469 -MEAVAHVCELAAEWRQTFH-SDVVVDL 494 (1021)
Q Consensus 469 -~eAV~~a~~~A~e~rr~~~-gPvlIe~ 494 (1021)
.+.+..+++.|+..++.+. |||+|++
T Consensus 133 ~~~~~~~~i~~A~~~A~~~~~GPv~l~i 160 (162)
T cd07037 133 DLWYLLRLANRAVLEALSAPPGPVHLNL 160 (162)
T ss_pred hHHHHHHHHHHHHHHHhCCCCCCEEEec
Confidence 3336677777777777775 8999987
No 201
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=49.91 E-value=77 Score=39.36 Aligned_cols=92 Identities=12% Similarity=0.041 Sum_probs=58.5
Q ss_pred cEEEEEeCccccCCccHHHHHHHhcCCCCCCcccEEEEEEcCCcccccCCCCCcccccHHHHHhhcCccEEEEeCCCHHH
Q 001713 392 NMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQVAFTTDPMSGRSSQYCTDVAKALDAPIFHVNGDDMEA 471 (1021)
Q Consensus 392 ~v~v~~~GDgA~sGqG~v~EalnlA~LP~y~~GGvI~Vv~NNq~g~tT~~~~~rs~~~~sd~Aka~g~p~~~VdG~D~eA 471 (1021)
.++++..|=|+++.-+-++++. ..++| +|+|+-.=.. ...........+..++++.+---..+| .+++.
T Consensus 70 gv~~~t~GPG~~n~~~gi~~A~-~~~~P------vl~I~g~~~~--~~~~~~~~q~~d~~~l~~~~tk~~~~i--~~~~~ 138 (588)
T PRK07525 70 GMVIGQNGPGITNFVTAVATAY-WAHTP------VVLVTPQAGT--KTIGQGGFQEAEQMPMFEDMTKYQEEV--RDPSR 138 (588)
T ss_pred EEEEEcCCccHHHHHHHHHHHh-hcCCC------EEEEeCCCCc--ccCCCCCCcccchhhhhhhheeEEEEC--CCHHH
Confidence 5677777888888666566555 33999 9988721111 000001111113345555554445555 47888
Q ss_pred HHHHHHHHHHHHHccCCCEEEEE
Q 001713 472 VAHVCELAAEWRQTFHSDVVVDL 494 (1021)
Q Consensus 472 V~~a~~~A~e~rr~~~gPvlIe~ 494 (1021)
+..+++.|+..++...|||.|++
T Consensus 139 ~~~~i~rA~~~A~~~~GPV~i~i 161 (588)
T PRK07525 139 MAEVLNRVFDKAKRESGPAQINI 161 (588)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEc
Confidence 88999999998888899999998
No 202
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=47.68 E-value=73 Score=39.77 Aligned_cols=93 Identities=14% Similarity=0.133 Sum_probs=59.3
Q ss_pred cEEEEEeCccccCCccHHHHHHHhcCCCCCCcccEEEEEEcCCcccccCCCCCcccccHHHHHhhcCccEEEEeCCCHHH
Q 001713 392 NMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQVAFTTDPMSGRSSQYCTDVAKALDAPIFHVNGDDMEA 471 (1021)
Q Consensus 392 ~v~v~~~GDgA~sGqG~v~EalnlA~LP~y~~GGvI~Vv~NNq~g~tT~~~~~rs~~~~sd~Aka~g~p~~~VdG~D~eA 471 (1021)
.++++..|=|+++.-.-++|+ ...++| +|+|+-.-.. +.......-..+..++++.+---..+|+ +++.
T Consensus 96 gv~~~t~GPG~~N~l~gl~~A-~~~~~P------llvI~G~~~~--~~~~~~~~q~~d~~~l~~~~tk~s~~v~--~~~~ 164 (612)
T PRK07789 96 GVCMATSGPGATNLVTPIADA-NMDSVP------VVAITGQVGR--GLIGTDAFQEADIVGITMPITKHNFLVT--DADD 164 (612)
T ss_pred EEEEECCCccHHHHHHHHHHH-hhcCCC------EEEEecCCCc--cccCCCcCcccchhhhhhcceeEEEEcC--CHHH
Confidence 566777788888865556665 234999 8888753221 1111111111244455555554555564 8899
Q ss_pred HHHHHHHHHHHHHcc-CCCEEEEEe
Q 001713 472 VAHVCELAAEWRQTF-HSDVVVDLV 495 (1021)
Q Consensus 472 V~~a~~~A~e~rr~~-~gPvlIe~v 495 (1021)
+..+++.|+..++.+ .|||+|++=
T Consensus 165 i~~~l~~A~~~A~~~~~GPV~l~iP 189 (612)
T PRK07789 165 IPRVIAEAFHIASTGRPGPVLVDIP 189 (612)
T ss_pred HHHHHHHHHHHHhcCCCceEEEEEc
Confidence 999999999888887 489999884
No 203
>PRK08366 vorA 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=47.01 E-value=1e+02 Score=36.60 Aligned_cols=88 Identities=18% Similarity=0.120 Sum_probs=59.1
Q ss_pred ccCCccHH--HHHHHhc---CCCCCCcccEEEEEEcCCcccccCCCCCcccccHHHHHhhcCccEEEEeCCCHHHHHHHH
Q 001713 402 SFAGQGVV--YETLHLS---ALPNYSIGGTIHIVVNNQVAFTTDPMSGRSSQYCTDVAKALDAPIFHVNGDDMEAVAHVC 476 (1021)
Q Consensus 402 A~sGqG~v--~EalnlA---~LP~y~~GGvI~Vv~NNq~g~tT~~~~~rs~~~~sd~Aka~g~p~~~VdG~D~eAV~~a~ 476 (1021)
+++|+|.. +|.|-+| .|| +|.++. |.-+- |+.. .+ .+-+|+-...+.-.+..=..|+.+++.-+
T Consensus 78 aTSg~Gl~lm~E~l~~aa~~~lP------iVi~~~-~R~~p-~~~~-~~--~~q~D~~~~~d~g~i~~~~~~~QEa~d~t 146 (390)
T PRK08366 78 ATSAQGLALMHEMLHWAAGARLP------IVMVDV-NRAMA-PPWS-VW--DDQTDSLAQRDTGWMQFYAENNQEVYDGV 146 (390)
T ss_pred eeCcccHHHHhhHHHHHHhcCCC------EEEEEe-ccCCC-CCCC-Cc--chhhHHHHHhhcCEEEEeCCCHHHHHHHH
Confidence 34678865 5888888 899 776666 33333 3321 11 12233322222222455558999999999
Q ss_pred HHHHHHHHccCCCEEEEEeeeccC
Q 001713 477 ELAAEWRQTFHSDVVVDLVCYRRF 500 (1021)
Q Consensus 477 ~~A~e~rr~~~gPvlIe~vtYR~~ 500 (1021)
..|.+.+.++.-||++-..+||..
T Consensus 147 ~~Af~lAE~~~~PViv~~Dg~~~s 170 (390)
T PRK08366 147 LMAFKVAETVNLPAMVVESAFILS 170 (390)
T ss_pred HHHHHHHHHHCCCEEEEecCcccc
Confidence 999999999999999999888864
No 204
>PRK08367 porA pyruvate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=46.69 E-value=97 Score=36.82 Aligned_cols=89 Identities=12% Similarity=0.108 Sum_probs=59.0
Q ss_pred ccCCccHH--HHHHHhc---CCCCCCcccEEEEEEcCCcccccCCC-CCcccccHHHHHhhcCccEEEEeCCCHHHHHHH
Q 001713 402 SFAGQGVV--YETLHLS---ALPNYSIGGTIHIVVNNQVAFTTDPM-SGRSSQYCTDVAKALDAPIFHVNGDDMEAVAHV 475 (1021)
Q Consensus 402 A~sGqG~v--~EalnlA---~LP~y~~GGvI~Vv~NNq~g~tT~~~-~~rs~~~~sd~Aka~g~p~~~VdG~D~eAV~~a 475 (1021)
+++|||.. +|.|.++ +|| +|+++.|=..+-.++.. ++. ++ .-.+-.|+-+ +=..|+.+++.-
T Consensus 79 aTS~~Gl~lm~E~l~~aag~~lP------~V~vv~~R~~~~p~~i~~d~~---D~-~~~rd~g~~~--~~a~~~QEa~D~ 146 (394)
T PRK08367 79 ATASQGLALMHEVLFIAAGMRLP------IVMAIGNRALSAPINIWNDWQ---DT-ISQRDTGWMQ--FYAENNQEALDL 146 (394)
T ss_pred eeccchHHHHhhHHHHHHHccCC------EEEEECCCCCCCCCCcCcchH---HH-HhccccCeEE--EeCCCHHHHHHH
Confidence 34678875 4888888 999 77777655444221221 111 11 1123334444 445899999999
Q ss_pred HHHHHHHHH--ccCCCEEEEEeeeccCCCC
Q 001713 476 CELAAEWRQ--TFHSDVVVDLVCYRRFGHN 503 (1021)
Q Consensus 476 ~~~A~e~rr--~~~gPvlIe~vtYR~~GHn 503 (1021)
+..|.+.+. +..-||++-..+||. +|+
T Consensus 147 ~~~Af~lAE~~~~~~Pviv~~Dgf~~-sH~ 175 (394)
T PRK08367 147 ILIAFKVAEDERVLLPAMVGFDAFIL-THT 175 (394)
T ss_pred HHHHHHHHHHhCcCCCEEEEechhhh-cCc
Confidence 999999998 455899999999985 564
No 205
>PRK07064 hypothetical protein; Provisional
Probab=46.31 E-value=68 Score=39.27 Aligned_cols=95 Identities=19% Similarity=0.189 Sum_probs=57.7
Q ss_pred cEEEEEeCccccCCccHHHHHHHhcCCCCCCcccEEEEEEcCCc-ccccCCCCCcccccHHHHHhhcCccEEEEeCCCHH
Q 001713 392 NMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQV-AFTTDPMSGRSSQYCTDVAKALDAPIFHVNGDDME 470 (1021)
Q Consensus 392 ~v~v~~~GDgA~sGqG~v~EalnlA~LP~y~~GGvI~Vv~NNq~-g~tT~~~~~rs~~~~sd~Aka~g~p~~~VdG~D~e 470 (1021)
.++++..|=|+++.-.-++||. ..+.| +|+|+-+=.. .+.+....-....+..++++.+---...|+ +++
T Consensus 68 ~v~~~t~GpG~~N~~~~i~~A~-~~~~P------vl~i~g~~~~~~~~~~~~~~~~~~d~~~~~~~~tk~~~~v~--~~~ 138 (544)
T PRK07064 68 GVALTSTGTGAGNAAGALVEAL-TAGTP------LLHITGQIETPYLDQDLGYIHEAPDQLTMLRAVSKAAFRVR--SAE 138 (544)
T ss_pred eEEEeCCCCcHHHHHHHHHHHH-hcCCC------EEEEeCCCCcccccCCCcccccccCHHHHhhhhcceEEEeC--CHH
Confidence 4666666877777444444443 22999 9998863211 011100000011245666776655566664 788
Q ss_pred HHHHHHHHHHHHHHcc-CCCEEEEEe
Q 001713 471 AVAHVCELAAEWRQTF-HSDVVVDLV 495 (1021)
Q Consensus 471 AV~~a~~~A~e~rr~~-~gPvlIe~v 495 (1021)
++..+++.|+..+..+ .|||.|++=
T Consensus 139 ~~~~~i~~A~~~a~~~~~GPV~l~iP 164 (544)
T PRK07064 139 TALATIREAVRVALTAPTGPVSVEIP 164 (544)
T ss_pred HHHHHHHHHHHHhccCCCCcEEEEeC
Confidence 8888888888888777 699999884
No 206
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=45.80 E-value=82 Score=39.01 Aligned_cols=93 Identities=12% Similarity=0.046 Sum_probs=56.3
Q ss_pred cEEEEEeCccccCCccHHHHHHHhcCCCCCCcccEEEEEEcCCcccccCCCCCcccccHHHHHhhcCccEEEEeCCCHHH
Q 001713 392 NMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQVAFTTDPMSGRSSQYCTDVAKALDAPIFHVNGDDMEA 471 (1021)
Q Consensus 392 ~v~v~~~GDgA~sGqG~v~EalnlA~LP~y~~GGvI~Vv~NNq~g~tT~~~~~rs~~~~sd~Aka~g~p~~~VdG~D~eA 471 (1021)
.++++..|=|+++.-+-++++. ..+.| +|+|.-. .+-........-..+..++++.+---..+| .+++.
T Consensus 66 gv~~~t~GPG~~N~~~gla~A~-~~~~P------vl~I~g~--~~~~~~~~~~~Q~~d~~~l~~~vtk~~~~v--~~~~~ 134 (579)
T TIGR03457 66 SMVIGQNGPGVTNCVTAIAAAY-WAHTP------VVIVTPE--AGTKTIGLGGFQEADQLPMFQEFTKYQGHV--RHPSR 134 (579)
T ss_pred EEEEECCCchHHHHHHHHHHHh-hcCCC------EEEEeCC--CccccCCCCCCcccchhhhhhcceeEEEec--CCHHH
Confidence 5666667888887444444443 23999 8888631 111110111111123445555544444455 47888
Q ss_pred HHHHHHHHHHHHHccCCCEEEEEe
Q 001713 472 VAHVCELAAEWRQTFHSDVVVDLV 495 (1021)
Q Consensus 472 V~~a~~~A~e~rr~~~gPvlIe~v 495 (1021)
+..+++.|+..+..++|||+|++=
T Consensus 135 ~~~~i~~A~~~A~~~~GPV~l~iP 158 (579)
T TIGR03457 135 MAEVLNRCFERAWREMGPAQLNIP 158 (579)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEeC
Confidence 888888888888888899999993
No 207
>COG1303 Uncharacterized protein conserved in archaea [Function unknown]
Probab=44.20 E-value=49 Score=34.49 Aligned_cols=54 Identities=19% Similarity=0.176 Sum_probs=43.4
Q ss_pred CCCCCcccccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEee
Q 001713 440 DPMSGRSSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVC 496 (1021)
Q Consensus 440 ~~~~~rs~~~~sd~Aka~g~p~~~VdG~D~eAV~~a~~~A~e~rr~~~gPvlIe~vt 496 (1021)
|..+-|-+...+--|+|||+..+-++|++-+.|.+.++..++ +++||.+|+..+
T Consensus 13 p~RDkRiTTHV~LtARAfGA~gil~~~e~De~v~esv~dVv~---rwGG~F~v~~~~ 66 (179)
T COG1303 13 PERDKRITTHVALTARAFGADGILLDGEEDEKVVESVEDVVE---RWGGPFFVKFGV 66 (179)
T ss_pred ccccccchhhhhhhhHhhCCceEEEcCcccHHHHHHHHHHHH---hcCCCEEEEEcc
Confidence 445566666677779999999999999987888888877775 799999888754
No 208
>PLN02470 acetolactate synthase
Probab=43.97 E-value=59 Score=40.30 Aligned_cols=93 Identities=16% Similarity=0.157 Sum_probs=58.2
Q ss_pred cEEEEEeCccccCCccHHHHHHHhcCCCCCCcccEEEEEEcCCcccccCCCCCcccccHHHHHhhcCccEEEEeCCCHHH
Q 001713 392 NMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQVAFTTDPMSGRSSQYCTDVAKALDAPIFHVNGDDMEA 471 (1021)
Q Consensus 392 ~v~v~~~GDgA~sGqG~v~EalnlA~LP~y~~GGvI~Vv~NNq~g~tT~~~~~rs~~~~sd~Aka~g~p~~~VdG~D~eA 471 (1021)
.++++..|=|+++.=.-++||. ..+.| +|+|.-.-... .......-..+..++++.+---...| ++++.
T Consensus 78 gv~~~t~GPG~~N~l~gia~A~-~~~~P------vl~I~G~~~~~--~~~~~~~q~~d~~~l~~~~tk~~~~v--~~~~~ 146 (585)
T PLN02470 78 GVCIATSGPGATNLVTGLADAL-LDSVP------LVAITGQVPRR--MIGTDAFQETPIVEVTRSITKHNYLV--MDVED 146 (585)
T ss_pred EEEEECCCccHHHHHHHHHHHH-hcCCc------EEEEecCCChh--hcCCCcCcccchhhhhhhheEEEEEc--CCHHH
Confidence 5677777888887433344433 22999 88886432211 10111111123345556555555666 48899
Q ss_pred HHHHHHHHHHHHHccC-CCEEEEEe
Q 001713 472 VAHVCELAAEWRQTFH-SDVVVDLV 495 (1021)
Q Consensus 472 V~~a~~~A~e~rr~~~-gPvlIe~v 495 (1021)
+..+++.|+..+..+. |||.|++=
T Consensus 147 i~~~l~~A~~~A~s~~~GPV~l~iP 171 (585)
T PLN02470 147 IPRVIREAFFLASSGRPGPVLVDIP 171 (585)
T ss_pred HHHHHHHHHHHhcCCCCCeEEEEec
Confidence 9999999999888886 99999984
No 209
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=43.25 E-value=1.1e+02 Score=32.91 Aligned_cols=59 Identities=24% Similarity=0.436 Sum_probs=39.1
Q ss_pred cEEEEEeCccccCCccHHHHHHHhcCCCCCCcccEEEEEEcCCcccccCCCCCcccccHHHHHhhcCccEEEEeCCC
Q 001713 392 NMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQVAFTTDPMSGRSSQYCTDVAKALDAPIFHVNGDD 468 (1021)
Q Consensus 392 ~v~v~~~GDgA~sGqG~v~EalnlA~LP~y~~GGvI~Vv~NNq~g~tT~~~~~rs~~~~sd~Aka~g~p~~~VdG~D 468 (1021)
.++|++-|+|+.. + .+.+++.-..++. .++.||.|+. .....++|+..|+|++.++-.+
T Consensus 3 ki~vl~sg~gs~~-~-~ll~~~~~~~~~~----~I~~vvs~~~------------~~~~~~~a~~~gIp~~~~~~~~ 61 (200)
T PRK05647 3 RIVVLASGNGSNL-Q-AIIDACAAGQLPA----EIVAVISDRP------------DAYGLERAEAAGIPTFVLDHKD 61 (200)
T ss_pred eEEEEEcCCChhH-H-HHHHHHHcCCCCc----EEEEEEecCc------------cchHHHHHHHcCCCEEEECccc
Confidence 5889999888876 4 3445544435552 3666667664 1135678999999999976444
No 210
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=42.26 E-value=70 Score=39.56 Aligned_cols=92 Identities=12% Similarity=0.158 Sum_probs=58.8
Q ss_pred cEEEEEeCccccCCccHHHHHHHhcCCCCCCcccEEEEEEcCCcccccCCCCCcccccHHHHHhhcCccEEEEeCCCHHH
Q 001713 392 NMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQVAFTTDPMSGRSSQYCTDVAKALDAPIFHVNGDDMEA 471 (1021)
Q Consensus 392 ~v~v~~~GDgA~sGqG~v~EalnlA~LP~y~~GGvI~Vv~NNq~g~tT~~~~~rs~~~~sd~Aka~g~p~~~VdG~D~eA 471 (1021)
.++++..|=|+++.-.-++++. ..+.| +|+|+-.-.... ......-..+..++++.+---..+|+ +++.
T Consensus 69 gv~~vt~GPG~~N~l~gl~~A~-~~~~P------vl~i~G~~~~~~--~~~~~~q~~d~~~l~~~itk~s~~v~--~~~~ 137 (574)
T PRK06466 69 GVVLVTSGPGATNAITGIATAY-MDSIP------MVVLSGQVPSTL--IGEDAFQETDMVGISRPIVKHSFMVK--HASE 137 (574)
T ss_pred EEEEECCCccHHHHHHHHHHHH-hcCCC------EEEEecCCCccc--cCCCcccccchhhhhhccceeEEEcC--CHHH
Confidence 5677777888887544455443 23999 998875332211 00111111234455665555566665 7888
Q ss_pred HHHHHHHHHHHHHccC-CCEEEEE
Q 001713 472 VAHVCELAAEWRQTFH-SDVVVDL 494 (1021)
Q Consensus 472 V~~a~~~A~e~rr~~~-gPvlIe~ 494 (1021)
+..+++.|+..++.+. |||.|++
T Consensus 138 ~~~~~~rA~~~A~~~~~GPV~l~i 161 (574)
T PRK06466 138 IPEIIKKAFYIAQSGRPGPVVVDI 161 (574)
T ss_pred HHHHHHHHHHHHhcCCCCcEEEEc
Confidence 9999999998888885 8999998
No 211
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=41.78 E-value=1e+02 Score=38.24 Aligned_cols=92 Identities=11% Similarity=0.156 Sum_probs=59.5
Q ss_pred cEEEEEeCccccCCccHHHHHHHhcCCCCCCcccEEEEEEcCCcccccCCCCCcccccHHHHHhhcCccEEEEeCCCHHH
Q 001713 392 NMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQVAFTTDPMSGRSSQYCTDVAKALDAPIFHVNGDDMEA 471 (1021)
Q Consensus 392 ~v~v~~~GDgA~sGqG~v~EalnlA~LP~y~~GGvI~Vv~NNq~g~tT~~~~~rs~~~~sd~Aka~g~p~~~VdG~D~eA 471 (1021)
.++++..|=|+++.-.-++++. ..+.| +|+|+-.-... .......-..+..++++.+---..+|+ +++.
T Consensus 79 gv~~~t~GpG~~N~~~gla~A~-~~~~P------vl~I~G~~~~~--~~~~~~~q~~d~~~l~~~itk~~~~v~--~~~~ 147 (570)
T PRK06725 79 GVVFATSGPGATNLVTGLADAY-MDSIP------LVVITGQVATP--LIGKDGFQEADVVGITVPVTKHNYQVR--DVNQ 147 (570)
T ss_pred eEEEECCCccHHHHHHHHHHHh-hcCcC------EEEEecCCCcc--cccCCCCcccchhhhhhccceeEEEcC--CHHH
Confidence 5677777888887544455443 23999 89887432211 111111112244556666665566664 7899
Q ss_pred HHHHHHHHHHHHHccC-CCEEEEE
Q 001713 472 VAHVCELAAEWRQTFH-SDVVVDL 494 (1021)
Q Consensus 472 V~~a~~~A~e~rr~~~-gPvlIe~ 494 (1021)
+..+++.|+..++.+. |||+|++
T Consensus 148 i~~~l~~A~~~A~s~~~GPV~l~i 171 (570)
T PRK06725 148 LSRIVQEAFYIAESGRPGPVLIDI 171 (570)
T ss_pred HHHHHHHHHHHHhcCCCCcEEEcc
Confidence 9999999999988875 8999998
No 212
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=41.76 E-value=91 Score=38.34 Aligned_cols=93 Identities=12% Similarity=0.027 Sum_probs=54.9
Q ss_pred cEEEEEeCccccCCccHHHHHHHhcCCCCCCcccEEEEEEcCCcccccCCCCCcccccHHHHHhhcCccEEEEeCCCHHH
Q 001713 392 NMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQVAFTTDPMSGRSSQYCTDVAKALDAPIFHVNGDDMEA 471 (1021)
Q Consensus 392 ~v~v~~~GDgA~sGqG~v~EalnlA~LP~y~~GGvI~Vv~NNq~g~tT~~~~~rs~~~~sd~Aka~g~p~~~VdG~D~eA 471 (1021)
.++++..|=|+++.-.-++||. ..+.| +|+|+-.-.... ......-..+..++++.+-- ...--.+++.
T Consensus 66 gv~~~t~GPG~~N~l~~l~~A~-~~~~P------vl~i~G~~~~~~--~~~~~~q~~d~~~l~~~vtk--~~~~v~~~~~ 134 (549)
T PRK06457 66 SACMGTSGPGSIHLLNGLYDAK-MDHAP------VIALTGQVESDM--IGHDYFQEVNLTKLFDDVAV--FNQILINPEN 134 (549)
T ss_pred eEEEeCCCCchhhhHHHHHHHH-hcCCC------EEEEecCCCccc--cCCCcccccchhhhhcccee--EEEEeCCHHH
Confidence 5666677888887444444443 23999 898875422110 00111111133334443322 2334457788
Q ss_pred HHHHHHHHHHHHHccCCCEEEEEe
Q 001713 472 VAHVCELAAEWRQTFHSDVVVDLV 495 (1021)
Q Consensus 472 V~~a~~~A~e~rr~~~gPvlIe~v 495 (1021)
+..+++.|+..+....|||+|++=
T Consensus 135 ~~~~i~~A~~~a~~~~GPV~l~iP 158 (549)
T PRK06457 135 AEYIIRRAIREAISKRGVAHINLP 158 (549)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEeC
Confidence 888888888888778899999984
No 213
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=41.44 E-value=94 Score=38.46 Aligned_cols=93 Identities=12% Similarity=0.038 Sum_probs=55.6
Q ss_pred cEEEEEeCccccCCccHHHHHHHhcCCCCCCcccEEEEEEcCCcccccCCCCCcccccHHHHHhhcCccEEEEeCCCHHH
Q 001713 392 NMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQVAFTTDPMSGRSSQYCTDVAKALDAPIFHVNGDDMEA 471 (1021)
Q Consensus 392 ~v~v~~~GDgA~sGqG~v~EalnlA~LP~y~~GGvI~Vv~NNq~g~tT~~~~~rs~~~~sd~Aka~g~p~~~VdG~D~eA 471 (1021)
.++++..|=|+++--.-++||. ..++| +|+|+-.=.. ........-..+..++++.+---...|+ +++.
T Consensus 76 gv~~~t~GpG~~N~~~gl~~A~-~~~~P------vl~I~G~~~~--~~~~~~~~Q~~d~~~l~~~vtk~~~~v~--~~~~ 144 (578)
T PRK06112 76 AVVTAQNGPAATLLVAPLAEAL-KASVP------IVALVQDVNR--DQTDRNAFQELDHIALFQSCTKWVRRVT--VAER 144 (578)
T ss_pred EEEEeCCCCcHHHHHHHHHHHh-hcCCC------EEEEecCCcc--ccCCCCCccccChhhhhccccceEEEeC--CHHH
Confidence 5666666777665333344432 23999 8988742111 1001111111244555666555555554 7888
Q ss_pred HHHHHHHHHHHHHccC-CCEEEEEe
Q 001713 472 VAHVCELAAEWRQTFH-SDVVVDLV 495 (1021)
Q Consensus 472 V~~a~~~A~e~rr~~~-gPvlIe~v 495 (1021)
+...++.|+..++.+. |||.|++=
T Consensus 145 ~~~~i~~A~~~A~~~~~GPv~l~iP 169 (578)
T PRK06112 145 IDDYVDQAFTAATSGRPGPVVLLLP 169 (578)
T ss_pred HHHHHHHHHHHHhhCCCCcEEEEcC
Confidence 8889999998888875 89999984
No 214
>COG4032 Predicted thiamine-pyrophosphate-binding protein [General function prediction only]
Probab=41.39 E-value=20 Score=36.60 Aligned_cols=121 Identities=15% Similarity=0.221 Sum_probs=76.8
Q ss_pred ecCccc-hHHHHHHHHhhccCCCCcceEehhhhhhhHhhHHHHHHHHHhhhhhhhcCccceEEEeCc-cCCCCCcCCcCc
Q 001713 702 SNSSLS-EFGVLGFELGYSMENPNSLVMWEAQFGDFANGAQVIFDQFVNSGESKWLRQSGLVVMLPH-GYDGQGPEHSSA 779 (1021)
Q Consensus 702 ~nspLS-E~~vlGfe~G~a~~g~~~lviwEaqFgDF~n~Aq~~iDqfi~s~~~kw~~~~~lV~~lPh-G~~G~GpeHSs~ 779 (1021)
.+.|++ |.--+|...|..++|.+|-.+ +|-...-|. | +-++|--. ..+-|+.|+.-| |+.+-+-+-.--
T Consensus 44 ~~i~vtREEeg~GIcAGa~lAGkk~ail--mQnsGlGNs----i-Nal~SL~~--ty~iPl~ml~ShRG~~~E~i~AQVp 114 (172)
T COG4032 44 PEIPVTREEEGVGICAGAYLAGKKPAIL--MQNSGLGNS----I-NALASLYV--TYKIPLLMLASHRGVLKEGIEAQVP 114 (172)
T ss_pred ccccccchhcceeeehhhhhcCCCcEEE--EeccCcchH----H-HHHHHHHH--HhccchhhhhhccchhhcCCccccc
Confidence 333443 455679999999999999663 676655442 2 22333211 246799999988 885544332222
Q ss_pred hhhHhhhccCCCCCcccCCCchhhhcccccCeEEEecCCHHHHHHHHHHHHhcCC--CCcEEEEeeccccCC
Q 001713 780 RLERFLQMSDDNPYVIPEMDSTLRTQIQECNWQIVNVTTPANYFHVLRRQIHREF--RKPLVVMSPKNLLRH 849 (1021)
Q Consensus 780 r~Er~Lql~~e~~~~~~~ipg~~~~~~~~~Nl~Vv~pstpad~fhlLrrqi~~~~--~kPliv~~pK~Llr~ 849 (1021)
+-|+ +.+.+..+|+.-..|-+|+.+..++..++...+ .+|+.++..-.+++.
T Consensus 115 -mGr~-----------------~~kiLe~~~lpt~t~~~p~Ea~~li~~~~~~a~~~s~pv~vlls~~~We~ 168 (172)
T COG4032 115 -MGRA-----------------LPKILEGLELPTYTIIGPEEALPLIENAILDAFENSRPVAVLLSPKYWEA 168 (172)
T ss_pred -cchh-----------------hHHHHhhcCCcccccCCHHHHHHHHHHHHHHHHHcCCceEEEechHHhhh
Confidence 2222 112344467888899999999999988876533 679988766555543
No 215
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=41.21 E-value=1.1e+02 Score=38.27 Aligned_cols=93 Identities=11% Similarity=0.063 Sum_probs=55.4
Q ss_pred cEEEEEeCccccCCccHHHHHHHhcCCCCCCcccEEEEEEcCCcccccCCCCCcccccHHHHHhhcCccEEEEeCCCHHH
Q 001713 392 NMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQVAFTTDPMSGRSSQYCTDVAKALDAPIFHVNGDDMEA 471 (1021)
Q Consensus 392 ~v~v~~~GDgA~sGqG~v~EalnlA~LP~y~~GGvI~Vv~NNq~g~tT~~~~~rs~~~~sd~Aka~g~p~~~VdG~D~eA 471 (1021)
.++++..|=|+++.-.-+++|. +.+.| +|+|+-+- ..+....+..-..+...+++.+---..+|+ +++.
T Consensus 87 gv~~~t~GPG~~n~l~gl~~A~-~d~~P------vl~i~G~~--~~~~~~~~~~Qe~d~~~~~~~vtk~~~~v~--~~~~ 155 (616)
T PRK07418 87 GVCFGTSGPGATNLVTGIATAQ-MDSVP------MVVITGQV--PRPAIGTDAFQETDIFGITLPIVKHSYVVR--DPSD 155 (616)
T ss_pred eEEEECCCccHHHHHHHHHHHH-hcCCC------EEEEecCC--CccccCCCCcccccHHHHhhhcceeEEEeC--CHHH
Confidence 4666666888777444444433 23999 88887521 111111111111234444554433344444 7899
Q ss_pred HHHHHHHHHHHHHccC-CCEEEEEe
Q 001713 472 VAHVCELAAEWRQTFH-SDVVVDLV 495 (1021)
Q Consensus 472 V~~a~~~A~e~rr~~~-gPvlIe~v 495 (1021)
+..++..|+..+...+ |||+|++=
T Consensus 156 i~~~l~~A~~~A~~~~~GPv~l~iP 180 (616)
T PRK07418 156 MARIVAEAFHIASSGRPGPVLIDIP 180 (616)
T ss_pred HHHHHHHHHHHHhcCCCCcEEEecc
Confidence 9999999999888887 99999874
No 216
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=40.91 E-value=75 Score=39.18 Aligned_cols=93 Identities=14% Similarity=0.140 Sum_probs=57.0
Q ss_pred cEEEEEeCccccCCccHHHHHHHhcCCCCCCcccEEEEEEcCCcccccCCCCCcccccHHHHHhhcCccEEEEeCCCHHH
Q 001713 392 NMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQVAFTTDPMSGRSSQYCTDVAKALDAPIFHVNGDDMEA 471 (1021)
Q Consensus 392 ~v~v~~~GDgA~sGqG~v~EalnlA~LP~y~~GGvI~Vv~NNq~g~tT~~~~~rs~~~~sd~Aka~g~p~~~VdG~D~eA 471 (1021)
.++++..|=|+++.-.-++||. ..+.| +|+|.-.-.... ......-.-+..++++.+---..+|+ +++.
T Consensus 78 gv~~~t~GpG~~N~l~gl~~A~-~~~~P------vl~i~G~~~~~~--~~~~~~q~~d~~~~~~~~tk~~~~v~--~~~~ 146 (564)
T PRK08155 78 AVCMACSGPGATNLVTAIADAR-LDSIP------LVCITGQVPASM--IGTDAFQEVDTYGISIPITKHNYLVR--DIEE 146 (564)
T ss_pred eEEEECCCCcHHHHHHHHHHHH-hcCCC------EEEEeccCCccc--ccCCCccccchhhhhhccceEEEEcC--CHHH
Confidence 4566666888877545555532 34999 888864222110 00111111233344554444455554 8999
Q ss_pred HHHHHHHHHHHHHccC-CCEEEEEe
Q 001713 472 VAHVCELAAEWRQTFH-SDVVVDLV 495 (1021)
Q Consensus 472 V~~a~~~A~e~rr~~~-gPvlIe~v 495 (1021)
+...++.|+..+..+. |||.|++=
T Consensus 147 ~~~~i~~A~~~a~~~~~GPV~i~iP 171 (564)
T PRK08155 147 LPQVISDAFRIAQSGRPGPVWIDIP 171 (564)
T ss_pred HHHHHHHHHHHHhcCCCCcEEEEcC
Confidence 9999999998888874 99999983
No 217
>PRK11269 glyoxylate carboligase; Provisional
Probab=40.31 E-value=85 Score=39.00 Aligned_cols=93 Identities=15% Similarity=0.104 Sum_probs=57.7
Q ss_pred cEEEEEeCccccCCccHHHHHHHhcCCCCCCcccEEEEEEcCCcccccCCCCCcccccHHHHHhhcCccEEEEeCCCHHH
Q 001713 392 NMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQVAFTTDPMSGRSSQYCTDVAKALDAPIFHVNGDDMEA 471 (1021)
Q Consensus 392 ~v~v~~~GDgA~sGqG~v~EalnlA~LP~y~~GGvI~Vv~NNq~g~tT~~~~~rs~~~~sd~Aka~g~p~~~VdG~D~eA 471 (1021)
.++++..|=|+++.=+-++||. ..+.| +|+|+-.-...... ....-..+..++++.+---.++| .+++.
T Consensus 70 gv~~~t~GPG~~N~l~gl~~A~-~~~~P------vl~I~G~~~~~~~~--~~~~q~~d~~~l~~~itk~s~~v--~~~~~ 138 (591)
T PRK11269 70 GVCIGTSGPAGTDMITGLYSAS-ADSIP------ILCITGQAPRARLH--KEDFQAVDIESIAKPVTKWAVTV--REPAL 138 (591)
T ss_pred EEEEECCCCcHHHHHHHHHHHh-hcCCC------EEEEecCCCccccC--CCcccccChhhHhhcceeEEEEc--CCHHH
Confidence 4566666877776444444433 23999 89887543321111 11111123445566554445555 57889
Q ss_pred HHHHHHHHHHHHHccC-CCEEEEEe
Q 001713 472 VAHVCELAAEWRQTFH-SDVVVDLV 495 (1021)
Q Consensus 472 V~~a~~~A~e~rr~~~-gPvlIe~v 495 (1021)
+..+++.|+..++.+. |||.|++=
T Consensus 139 ~~~~i~~A~~~A~~~~~GPV~l~iP 163 (591)
T PRK11269 139 VPRVFQQAFHLMRSGRPGPVLIDLP 163 (591)
T ss_pred HHHHHHHHHHHHhhCCCCeEEEEeC
Confidence 9999999999988875 89999984
No 218
>PRK07586 hypothetical protein; Validated
Probab=39.72 E-value=81 Score=38.35 Aligned_cols=93 Identities=13% Similarity=0.073 Sum_probs=57.0
Q ss_pred cEEEEEeCccccCCccHHHHHHHhcCCCCCCcccEEEEEEcCCcccccCCCCCcccccHHHHHhhcCccEEEEeCCCHHH
Q 001713 392 NMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQVAFTTDPMSGRSSQYCTDVAKALDAPIFHVNGDDMEA 471 (1021)
Q Consensus 392 ~v~v~~~GDgA~sGqG~v~EalnlA~LP~y~~GGvI~Vv~NNq~g~tT~~~~~rs~~~~sd~Aka~g~p~~~VdG~D~eA 471 (1021)
.++++..|=|++++-+-++++. ..+.| +|+|+-.-..... .....-..+..++++.+---..+| .+++.
T Consensus 66 gv~~~t~GPG~~N~~~gl~~A~-~~~~P------vl~i~G~~~~~~~--~~~~~q~~d~~~~~~~vtk~~~~v--~~~~~ 134 (514)
T PRK07586 66 AATLLHLGPGLANGLANLHNAR-RARTP------IVNIVGDHATYHR--KYDAPLTSDIEALARPVSGWVRRS--ESAAD 134 (514)
T ss_pred EEEEecccHHHHHHHHHHHHHH-hcCCC------EEEEecCCchhcc--CCCcccccchhhhhccccceeeec--CCHHH
Confidence 5666777888877444444443 23999 8888754322110 111111123444555544334444 47888
Q ss_pred HHHHHHHHHHHHHcc-CCCEEEEEe
Q 001713 472 VAHVCELAAEWRQTF-HSDVVVDLV 495 (1021)
Q Consensus 472 V~~a~~~A~e~rr~~-~gPvlIe~v 495 (1021)
+..+++.|+..+..+ .|||+|++=
T Consensus 135 ~~~~i~~A~~~a~~~~~GPV~l~iP 159 (514)
T PRK07586 135 VAADAAAAVAAARGAPGQVATLILP 159 (514)
T ss_pred HHHHHHHHHHHHhcCCCCcEEEEec
Confidence 888999999888887 599999983
No 219
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=38.89 E-value=1.4e+02 Score=37.02 Aligned_cols=93 Identities=17% Similarity=0.138 Sum_probs=59.2
Q ss_pred CcEEEEEeCccccCCccHHHHHHHhcCCCCCCcccEEEEEEcCCcccccCCCCCcccccHHHHHhhcCccEEEEeCCCHH
Q 001713 391 KNMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQVAFTTDPMSGRSSQYCTDVAKALDAPIFHVNGDDME 470 (1021)
Q Consensus 391 ~~v~v~~~GDgA~sGqG~v~EalnlA~LP~y~~GGvI~Vv~NNq~g~tT~~~~~rs~~~~sd~Aka~g~p~~~VdG~D~e 470 (1021)
-.|+++..|=|+++.=.-++. ..+.+.| +|.|.= |..-+.-..+..-.-+...+.+.+---.+.|. +++
T Consensus 65 pgV~~~tsGPGatN~~tgla~-A~~d~~P------ll~itG--qv~~~~~g~~afQe~D~~~l~~p~tk~~~~v~--~~~ 133 (550)
T COG0028 65 PGVCLVTSGPGATNLLTGLAD-AYMDSVP------LLAITG--QVPTSLIGTDAFQEVDQVGLFRPITKYNFEVR--SPE 133 (550)
T ss_pred CEEEEECCCCcHHHHHHHHHH-HHhcCCC------EEEEeC--CccccccCcchhhhcchhhHhhhhheeEEEeC--CHH
Confidence 378999999999883222222 2244899 776643 22222111122222345555555555555665 789
Q ss_pred HHHHHHHHHHHHHHccC-CCEEEEE
Q 001713 471 AVAHVCELAAEWRQTFH-SDVVVDL 494 (1021)
Q Consensus 471 AV~~a~~~A~e~rr~~~-gPvlIe~ 494 (1021)
.+-.++++|+..+..++ |||+|++
T Consensus 134 ~ip~~i~~Af~~A~sgrpGpv~i~i 158 (550)
T COG0028 134 DIPEVVARAFRIALSGRPGPVVVDL 158 (550)
T ss_pred HHHHHHHHHHHHHhcCCCceEEEEc
Confidence 99999999999999888 9999998
No 220
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=38.81 E-value=1.4e+02 Score=37.07 Aligned_cols=93 Identities=14% Similarity=0.142 Sum_probs=59.9
Q ss_pred cEEEEEeCccccCCccHHHHHHHhcCCCCCCcccEEEEEEcCCcccccCCCCCcccccHHHHHhhcCccEEEEeCCCHHH
Q 001713 392 NMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQVAFTTDPMSGRSSQYCTDVAKALDAPIFHVNGDDMEA 471 (1021)
Q Consensus 392 ~v~v~~~GDgA~sGqG~v~EalnlA~LP~y~~GGvI~Vv~NNq~g~tT~~~~~rs~~~~sd~Aka~g~p~~~VdG~D~eA 471 (1021)
.++++..|=|+++.-.-++++. ..+.| +|+|+-.-.. +.......-..+...+++.+---...|+ +++.
T Consensus 69 gv~~~t~GPG~~n~l~gi~~A~-~~~~P------vl~i~G~~~~--~~~~~~~~q~~d~~~l~~~~tk~~~~v~--~~~~ 137 (574)
T PRK07979 69 GVVLVTSGPGATNAITGIATAY-MDSIP------LVVLSGQVAT--SLIGYDAFQECDMVGISRPVVKHSFLVK--QTED 137 (574)
T ss_pred eEEEECCCccHhhhHHHHHHHh-hcCCC------EEEEECCCCh--hccCCCCCceecHHHHhhcccceEEEeC--CHHH
Confidence 5677777888887444444443 23999 8888753221 1111111112344556666656666675 7999
Q ss_pred HHHHHHHHHHHHHccC-CCEEEEEe
Q 001713 472 VAHVCELAAEWRQTFH-SDVVVDLV 495 (1021)
Q Consensus 472 V~~a~~~A~e~rr~~~-gPvlIe~v 495 (1021)
+..+++.|+..++.+. |||+|++=
T Consensus 138 ~~~~l~~A~~~A~~~~~GPv~l~iP 162 (574)
T PRK07979 138 IPQVLKKAFWLAASGRPGPVVVDLP 162 (574)
T ss_pred HHHHHHHHHHHHccCCCCcEEEEcC
Confidence 9999999999888885 99999983
No 221
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=38.78 E-value=87 Score=39.00 Aligned_cols=93 Identities=17% Similarity=0.105 Sum_probs=53.8
Q ss_pred cEEEEEeCccccCCccHHHHHHHhcCCCCCCcccEEEEEEcCCcccccCCCCCcccccHHHHHhhcC-ccEEEEeCCCHH
Q 001713 392 NMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQVAFTTDPMSGRSSQYCTDVAKALD-APIFHVNGDDME 470 (1021)
Q Consensus 392 ~v~v~~~GDgA~sGqG~v~EalnlA~LP~y~~GGvI~Vv~NNq~g~tT~~~~~rs~~~~sd~Aka~g-~p~~~VdG~D~e 470 (1021)
.++++..|=|+++.=.-+++|. ..+.| +|+|+-. ..-........-..+..++++.+- --...|+ +++
T Consensus 69 gv~~~t~GPG~~n~~~gi~~A~-~d~vP------vl~I~G~--~~~~~~~~~~~q~~d~~~l~~~vt~k~~~~v~--~~~ 137 (597)
T PRK08273 69 GVCLATSGPGAIHLLNGLYDAK-LDHVP------VVAIVGQ--QARAALGGHYQQEVDLQSLFKDVAGAFVQMVT--VPE 137 (597)
T ss_pred EEEEECCCccHHHHHHHHHHHH-hcCCC------EEEEecC--CchhhcCCCCCCccCHHHHHHHHHHHHeeEeC--CHH
Confidence 4666666888877333333332 23999 8888732 111111111111123344555443 3344554 677
Q ss_pred HHHHHHHHHHHHHHccCCCEEEEEe
Q 001713 471 AVAHVCELAAEWRQTFHSDVVVDLV 495 (1021)
Q Consensus 471 AV~~a~~~A~e~rr~~~gPvlIe~v 495 (1021)
.+..+++.|+..+...+|||.|++=
T Consensus 138 ~~~~~l~~A~~~A~~~~gPV~i~iP 162 (597)
T PRK08273 138 QLRHLVDRAVRTALAERTVTAVILP 162 (597)
T ss_pred HHHHHHHHHHHHHhhCCCCEEEEeC
Confidence 8888888888888888899999874
No 222
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=38.47 E-value=92 Score=30.42 Aligned_cols=49 Identities=22% Similarity=0.196 Sum_probs=30.2
Q ss_pred ccccHHHHHhhcCccEEEE--eCCCH-HHHHHHHHHHHHHHHccCCCEEEEEeee
Q 001713 446 SSQYCTDVAKALDAPIFHV--NGDDM-EAVAHVCELAAEWRQTFHSDVVVDLVCY 497 (1021)
Q Consensus 446 s~~~~sd~Aka~g~p~~~V--dG~D~-eAV~~a~~~A~e~rr~~~gPvlIe~vtY 497 (1021)
+.....+.|++.|+..+|+ .+.++ .+-..++..+++ .-.+||++.|.+=
T Consensus 45 ~~~~~~~~a~~~Gl~y~~iPv~~~~~~~~~v~~f~~~l~---~~~~Pvl~hC~sG 96 (110)
T PF04273_consen 45 SSAEEAAAAEALGLQYVHIPVDGGAITEEDVEAFADALE---SLPKPVLAHCRSG 96 (110)
T ss_dssp -HHCHHHHHHHCT-EEEE----TTT--HHHHHHHHHHHH---TTTTSEEEE-SCS
T ss_pred CHHHHHHHHHHcCCeEEEeecCCCCCCHHHHHHHHHHHH---hCCCCEEEECCCC
Confidence 4456778899999998885 55443 444555555654 4578999999763
No 223
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=38.40 E-value=1.1e+02 Score=37.56 Aligned_cols=93 Identities=16% Similarity=0.171 Sum_probs=58.3
Q ss_pred cEEEEEeCccccCCccHHHHHHHhcCCCCCCcccEEEEEEcCCcccccCCCCCcccccHHHHHhhcCccEEEEeCCCHHH
Q 001713 392 NMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQVAFTTDPMSGRSSQYCTDVAKALDAPIFHVNGDDMEA 471 (1021)
Q Consensus 392 ~v~v~~~GDgA~sGqG~v~EalnlA~LP~y~~GGvI~Vv~NNq~g~tT~~~~~rs~~~~sd~Aka~g~p~~~VdG~D~eA 471 (1021)
.++++..|=|+++.-.-++||. ..+.| +|+|.-.-..-.. .....-..+..++++.+---.+.|+ +++.
T Consensus 65 gv~~~t~GpG~~n~~~~l~~A~-~~~~P------vl~i~g~~~~~~~--~~~~~q~~d~~~~~~~~tk~~~~v~--~~~~ 133 (548)
T PRK08978 65 GVCIATSGPGATNLITGLADAL-LDSVP------VVAITGQVSSPLI--GTDAFQEIDVLGLSLACTKHSFLVQ--SLEE 133 (548)
T ss_pred EEEEECCCCcHHHHHHHHHHHh-hcCCC------EEEEecCCCcccc--CCCCCcccchhccccCceeeEEEEC--CHHH
Confidence 5677777888877544455543 23999 8888753221100 0000111233445555555566675 7899
Q ss_pred HHHHHHHHHHHHHccC-CCEEEEEe
Q 001713 472 VAHVCELAAEWRQTFH-SDVVVDLV 495 (1021)
Q Consensus 472 V~~a~~~A~e~rr~~~-gPvlIe~v 495 (1021)
+..+++.|+..++.+. |||.|++=
T Consensus 134 ~~~~i~~A~~~A~~~~~GPV~l~iP 158 (548)
T PRK08978 134 LPEIMAEAFEIASSGRPGPVLVDIP 158 (548)
T ss_pred HHHHHHHHHHHHhcCCCCcEEEecC
Confidence 9999999998888875 99999884
No 224
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=38.07 E-value=1e+02 Score=38.02 Aligned_cols=95 Identities=14% Similarity=0.104 Sum_probs=58.5
Q ss_pred cEEEEEeCccccCCccHHHHHHHhcCCCCCCcccEEEEEEcCCcccccCCCCCcccccHHHHHhhcCccEEEEeCCCHHH
Q 001713 392 NMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQVAFTTDPMSGRSSQYCTDVAKALDAPIFHVNGDDMEA 471 (1021)
Q Consensus 392 ~v~v~~~GDgA~sGqG~v~EalnlA~LP~y~~GGvI~Vv~NNq~g~tT~~~~~rs~~~~sd~Aka~g~p~~~VdG~D~eA 471 (1021)
.++++..|=|+++.=.-+++|. ..+.| +|+|+-......-..........+...+++.+---..+|+ ++++
T Consensus 67 gv~~~t~GPG~~N~~~gia~A~-~~~~P------vl~I~G~~~~~~~~~~~~~~q~~d~~~~~~~vtk~~~~v~--~~~~ 137 (554)
T TIGR03254 67 GVCLTVSAPGFLNGLTALANAT-TNCFP------MIMISGSSERHIVDLQQGDYEEMDQLAAAKPFAKAAYRVL--RAED 137 (554)
T ss_pred EEEEEccCccHHhHHHHHHHHH-hcCCC------EEEEEccCCccccccCCCCcchhhHHHHhhhhheeEEEcC--CHHH
Confidence 5666677888877333333332 22999 9998864432210000111112244556666666677776 7888
Q ss_pred HHHHHHHHHHHHHccC-CCEEEEEe
Q 001713 472 VAHVCELAAEWRQTFH-SDVVVDLV 495 (1021)
Q Consensus 472 V~~a~~~A~e~rr~~~-gPvlIe~v 495 (1021)
+..++..|+..+..+. |||.|++=
T Consensus 138 ~~~~i~rA~~~A~~~~pGPV~l~iP 162 (554)
T TIGR03254 138 IGIGIARAIRTAVSGRPGGVYLDLP 162 (554)
T ss_pred HHHHHHHHHHHHhcCCCCcEEEEcC
Confidence 8888888888887764 88999983
No 225
>PRK08322 acetolactate synthase; Reviewed
Probab=37.92 E-value=98 Score=37.93 Aligned_cols=93 Identities=12% Similarity=0.066 Sum_probs=55.4
Q ss_pred cEEEEEeCccccCCccHHHHHHHhcCCCCCCcccEEEEEEcCCcccccCCCCCcccccHHHHHhhcCccEEEEeCCCHHH
Q 001713 392 NMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQVAFTTDPMSGRSSQYCTDVAKALDAPIFHVNGDDMEA 471 (1021)
Q Consensus 392 ~v~v~~~GDgA~sGqG~v~EalnlA~LP~y~~GGvI~Vv~NNq~g~tT~~~~~rs~~~~sd~Aka~g~p~~~VdG~D~eA 471 (1021)
.++++..|=|+++.-.-++||. ..+.| +|+|+-.=... ..........+..++++.+---..+| ++++.
T Consensus 65 gv~~~t~GpG~~N~~~~i~~A~-~~~~P------ll~i~g~~~~~--~~~~~~~q~~d~~~~~~~~tk~~~~v--~~~~~ 133 (547)
T PRK08322 65 GVCLSTLGPGATNLVTGVAYAQ-LGGMP------MVAITGQKPIK--RSKQGSFQIVDVVAMMAPLTKWTRQI--VSPDN 133 (547)
T ss_pred EEEEECCCccHhHHHHHHHHHh-hcCCC------EEEEecccccc--ccCCCccccccHHHHhhhheeEEEEe--CCHHH
Confidence 4566666888877444444443 23999 88887432211 10111111223444555443334445 47888
Q ss_pred HHHHHHHHHHHHHccC-CCEEEEEe
Q 001713 472 VAHVCELAAEWRQTFH-SDVVVDLV 495 (1021)
Q Consensus 472 V~~a~~~A~e~rr~~~-gPvlIe~v 495 (1021)
+..++..|+..+..+. |||+|++=
T Consensus 134 ~~~~i~~A~~~A~~~~~GPV~l~iP 158 (547)
T PRK08322 134 IPEVVREAFRLAEEERPGAVHLELP 158 (547)
T ss_pred HHHHHHHHHHHHccCCCCcEEEEcC
Confidence 8899999998888874 89999984
No 226
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=37.23 E-value=1e+02 Score=38.08 Aligned_cols=93 Identities=12% Similarity=0.064 Sum_probs=56.6
Q ss_pred cEEEEEeCccccCCccHHHHHHHhcCCCCCCcccEEEEEEcCCcccccCCCCCcccccHHHHHhhcCccEEEEeCCCHHH
Q 001713 392 NMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQVAFTTDPMSGRSSQYCTDVAKALDAPIFHVNGDDMEA 471 (1021)
Q Consensus 392 ~v~v~~~GDgA~sGqG~v~EalnlA~LP~y~~GGvI~Vv~NNq~g~tT~~~~~rs~~~~sd~Aka~g~p~~~VdG~D~eA 471 (1021)
.++++..|=|+++.=.-++||. ..+.| +|+|.-.-... .......-..+..++++.+---...| ++++.
T Consensus 70 gv~~~t~GpG~~N~l~gi~~A~-~~~~P------vl~i~G~~~~~--~~~~~~~q~~d~~~i~~~~tk~~~~v--~~~~~ 138 (572)
T PRK06456 70 GVCTATSGPGTTNLVTGLITAY-WDSSP------VIAITGQVPRS--VMGKMAFQEADAMGVFENVTKYVIGI--KRIDE 138 (572)
T ss_pred EEEEeCCCCCHHHHHHHHHHHH-hhCCC------EEEEecCCCcc--ccCCCCccccchhhhhhccceeEEEe--CCHHH
Confidence 4555667888887444444443 23999 88887432211 00011111113344555554445555 58889
Q ss_pred HHHHHHHHHHHHHccC-CCEEEEEe
Q 001713 472 VAHVCELAAEWRQTFH-SDVVVDLV 495 (1021)
Q Consensus 472 V~~a~~~A~e~rr~~~-gPvlIe~v 495 (1021)
+..++..|+..+..+. |||.|++=
T Consensus 139 ~~~~l~~A~~~A~~~~~GPV~l~iP 163 (572)
T PRK06456 139 IPQWIKNAFYIATTGRPGPVVIDIP 163 (572)
T ss_pred HHHHHHHHHHHHhcCCCCcEEEecC
Confidence 8899999998888875 99999983
No 227
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=37.23 E-value=96 Score=38.19 Aligned_cols=93 Identities=13% Similarity=0.080 Sum_probs=53.9
Q ss_pred cEEEEEeCccccCCccHHHHHHHhcCCCCCCcccEEEEEEcCCcccccCCCCCcccccHHHHHhhcCccEEEEeCCCHHH
Q 001713 392 NMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQVAFTTDPMSGRSSQYCTDVAKALDAPIFHVNGDDMEA 471 (1021)
Q Consensus 392 ~v~v~~~GDgA~sGqG~v~EalnlA~LP~y~~GGvI~Vv~NNq~g~tT~~~~~rs~~~~sd~Aka~g~p~~~VdG~D~eA 471 (1021)
.++++..|=|+++.-.-++||. ..+.| +|+|.-.=.. ........-..+..++++.+=--...| ++++.
T Consensus 73 gv~~~t~GpG~~N~~~gi~~A~-~~~~P------vl~i~g~~~~--~~~~~~~~q~~d~~~l~~~~tk~~~~v--~~~~~ 141 (557)
T PRK08199 73 GICFVTRGPGATNASIGVHTAF-QDSTP------MILFVGQVAR--DFREREAFQEIDYRRMFGPMAKWVAEI--DDAAR 141 (557)
T ss_pred EEEEeCCCccHHHHHHHHHHHh-hcCCC------EEEEecCCcc--ccCCCCcccccCHHHhhhhhhceeeec--CCHHH
Confidence 5666666777776333333332 22999 8888742211 101111111123334444433334444 58999
Q ss_pred HHHHHHHHHHHHHccC-CCEEEEEe
Q 001713 472 VAHVCELAAEWRQTFH-SDVVVDLV 495 (1021)
Q Consensus 472 V~~a~~~A~e~rr~~~-gPvlIe~v 495 (1021)
+..++..|+..+..+. |||.|++=
T Consensus 142 ~~~~~~~A~~~A~~~~~GPV~l~iP 166 (557)
T PRK08199 142 IPELVSRAFHVATSGRPGPVVLALP 166 (557)
T ss_pred HHHHHHHHHHHHhcCCCCcEEEEcC
Confidence 9999999999888874 89999883
No 228
>PRK12474 hypothetical protein; Provisional
Probab=36.36 E-value=1.1e+02 Score=37.22 Aligned_cols=92 Identities=15% Similarity=0.115 Sum_probs=57.0
Q ss_pred cEEEEEeCccccCCccHHHHHHHhcCCCCCCcccEEEEEEcCCcccccCCCCCcccccHHHHHhhcCccEEEEeCCCHHH
Q 001713 392 NMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQVAFTTDPMSGRSSQYCTDVAKALDAPIFHVNGDDMEA 471 (1021)
Q Consensus 392 ~v~v~~~GDgA~sGqG~v~EalnlA~LP~y~~GGvI~Vv~NNq~g~tT~~~~~rs~~~~sd~Aka~g~p~~~VdG~D~eA 471 (1021)
.++++..|=|++++-.-++++. ..+.| +|+|+-.....-.. ....-..+...+++.+---...| ++++.
T Consensus 70 gv~~~t~GpG~~N~~~gl~~A~-~d~~P------vl~i~G~~~~~~~~--~~~~q~~d~~~~~~~vtk~~~~v--~~~~~ 138 (518)
T PRK12474 70 AVTLLHLGPGLANGLANLHNAR-RAASP------IVNIVGDHAVEHLQ--YDAPLTSDIDGFARPVSRWVHRS--ASAGA 138 (518)
T ss_pred EEEEEccchhHhHhHHHHHHHh-hcCCC------EEEEeccCchhhcC--CCCccccCHHHhhhcccceeeec--CCHHH
Confidence 5677777888887444444443 23999 99998643321110 00001124445555443334444 58888
Q ss_pred HHHHHHHHHHHHHccC-CCEEEEE
Q 001713 472 VAHVCELAAEWRQTFH-SDVVVDL 494 (1021)
Q Consensus 472 V~~a~~~A~e~rr~~~-gPvlIe~ 494 (1021)
+..+++.|+..+..+. |||+|++
T Consensus 139 ~~~~i~rA~~~A~~~~~GPV~l~i 162 (518)
T PRK12474 139 VDSDVARAVQAAQSAPGGIATLIM 162 (518)
T ss_pred HHHHHHHHHHHHhcCCCCcEEEEe
Confidence 8999999998888876 8999998
No 229
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=35.28 E-value=48 Score=25.08 Aligned_cols=27 Identities=15% Similarity=0.329 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHccCCCHHHHHHHHHHHH
Q 001713 525 SLEIYQNKLLECQHVTQEDINKIQEKVN 552 (1021)
Q Consensus 525 pi~~y~~~Li~~Gi~t~ee~~~i~~~~~ 552 (1021)
.+..+. .|.++|++|++|.++.++.+.
T Consensus 4 ~L~~L~-~l~~~G~IseeEy~~~k~~ll 30 (31)
T PF09851_consen 4 RLEKLK-ELYDKGEISEEEYEQKKARLL 30 (31)
T ss_pred HHHHHH-HHHHcCCCCHHHHHHHHHHHh
Confidence 344443 467999999999999887653
No 230
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=35.26 E-value=1e+02 Score=38.31 Aligned_cols=93 Identities=15% Similarity=0.120 Sum_probs=56.9
Q ss_pred cEEEEEeCccccCCccHHHHHHHhcCCCCCCcccEEEEEEcCCcccccCCCCCcccccHHHHHhhcCccEEEEeCCCHHH
Q 001713 392 NMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQVAFTTDPMSGRSSQYCTDVAKALDAPIFHVNGDDMEA 471 (1021)
Q Consensus 392 ~v~v~~~GDgA~sGqG~v~EalnlA~LP~y~~GGvI~Vv~NNq~g~tT~~~~~rs~~~~sd~Aka~g~p~~~VdG~D~eA 471 (1021)
.++++..|=|+++.-.-++++. ..+.| +|+|+-.-...... ....-..+..++++.+---..+|+ +++.
T Consensus 69 gv~~~t~GpG~~N~~~gla~A~-~~~~P------vl~I~G~~~~~~~~--~~~~q~~D~~~~~~~vtk~~~~v~--~~~~ 137 (588)
T TIGR01504 69 GVCIGTSGPAGTDMITGLYSAS-ADSIP------ILCITGQAPRARLH--KEDFQAVDIAAIAKPVSKMAVTVR--EAAL 137 (588)
T ss_pred EEEEECCCccHHHHHHHHHHHh-hcCCC------EEEEecCCCccccC--CCcccccCHHHHhhhhceEEEEcC--CHHH
Confidence 4555556777776333333332 23999 89887433321110 111112245566666655566665 7899
Q ss_pred HHHHHHHHHHHHHccC-CCEEEEEe
Q 001713 472 VAHVCELAAEWRQTFH-SDVVVDLV 495 (1021)
Q Consensus 472 V~~a~~~A~e~rr~~~-gPvlIe~v 495 (1021)
+..+++.|+..++.+. |||+|++=
T Consensus 138 i~~~i~~A~~~A~~~~~GPV~l~iP 162 (588)
T TIGR01504 138 VPRVLQQAFHLMRSGRPGPVLIDLP 162 (588)
T ss_pred HHHHHHHHHHHHccCCCCeEEEEeC
Confidence 9999999998888875 89999983
No 231
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=34.75 E-value=1.4e+02 Score=37.28 Aligned_cols=93 Identities=15% Similarity=0.177 Sum_probs=58.8
Q ss_pred cEEEEEeCccccCCccHHHHHHHhcCCCCCCcccEEEEEEcCCcccccCCCCCcccccHHHHHhhcCccEEEEeCCCHHH
Q 001713 392 NMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQVAFTTDPMSGRSSQYCTDVAKALDAPIFHVNGDDMEA 471 (1021)
Q Consensus 392 ~v~v~~~GDgA~sGqG~v~EalnlA~LP~y~~GGvI~Vv~NNq~g~tT~~~~~rs~~~~sd~Aka~g~p~~~VdG~D~eA 471 (1021)
.++++..|=|+++.-+-++++. ..+.| +|+|.-.-.... ......-..+...+++.+---...| ++++.
T Consensus 76 gv~~~t~GPG~~N~l~gia~A~-~~~~P------vl~i~G~~~~~~--~~~~~~q~~d~~~l~~~vtk~~~~v--~~~~~ 144 (595)
T PRK09107 76 GVVLVTSGPGATNAVTPLQDAL-MDSIP------LVCITGQVPTHL--IGSDAFQECDTVGITRPCTKHNWLV--KDVND 144 (595)
T ss_pred EEEEECCCccHhHHHHHHHHHh-hcCCC------EEEEEcCCChhh--cCCCCCcccchhhhhhhheEEEEEe--CCHHH
Confidence 5677777888888666666654 34999 888875332211 0111111123334455444444455 47899
Q ss_pred HHHHHHHHHHHHHccC-CCEEEEEe
Q 001713 472 VAHVCELAAEWRQTFH-SDVVVDLV 495 (1021)
Q Consensus 472 V~~a~~~A~e~rr~~~-gPvlIe~v 495 (1021)
+..++..|++.++.+. |||.|++=
T Consensus 145 i~~~l~~A~~~A~s~~~GPV~l~iP 169 (595)
T PRK09107 145 LARVIHEAFHVATSGRPGPVVVDIP 169 (595)
T ss_pred HHHHHHHHHHHhcCCCCceEEEecC
Confidence 9999999999998885 89999883
No 232
>PRK07524 hypothetical protein; Provisional
Probab=34.57 E-value=2e+02 Score=35.18 Aligned_cols=94 Identities=13% Similarity=0.058 Sum_probs=58.1
Q ss_pred cEEEEEeCccccCCccHHHHHHHhcCCCCCCcccEEEEEEcCCccc-ccCCCCCcccccHHHHHhhcCccEEEEeCCCHH
Q 001713 392 NMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQVAF-TTDPMSGRSSQYCTDVAKALDAPIFHVNGDDME 470 (1021)
Q Consensus 392 ~v~v~~~GDgA~sGqG~v~EalnlA~LP~y~~GGvI~Vv~NNq~g~-tT~~~~~rs~~~~sd~Aka~g~p~~~VdG~D~e 470 (1021)
.++++..|=|+++.-+-+++|. ..++| +|+|+-...... ...........+..++++.+-.-...|+ +++
T Consensus 66 gv~~~t~GpG~~n~~~gi~~A~-~~~~P------vl~i~G~~~~~~~~~~~~~~~~~~d~~~l~~~~tk~~~~v~--~~~ 136 (535)
T PRK07524 66 GVCFIITGPGMTNIATAMGQAY-ADSIP------MLVISSVNRRASLGKGRGKLHELPDQRAMVAGVAAFSHTLM--SAE 136 (535)
T ss_pred eEEEECCCccHHHHHHHHHHHH-hcCCC------EEEEeCCCChhhcCCCCccccccccHHHHhhhhceeEEEeC--CHH
Confidence 4666667888877444444433 23999 898875433211 0000000111345566666555455554 789
Q ss_pred HHHHHHHHHHHHHHcc-CCCEEEEE
Q 001713 471 AVAHVCELAAEWRQTF-HSDVVVDL 494 (1021)
Q Consensus 471 AV~~a~~~A~e~rr~~-~gPvlIe~ 494 (1021)
.+..+++.|+..++.+ .|||+|++
T Consensus 137 ~~~~~l~~A~~~A~~~~~GPV~l~i 161 (535)
T PRK07524 137 DLPEVLARAFAVFDSARPRPVHIEI 161 (535)
T ss_pred HHHHHHHHHHHHHhcCCCCcEEEEe
Confidence 9999999999988877 59999998
No 233
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=33.42 E-value=1.2e+02 Score=37.54 Aligned_cols=93 Identities=14% Similarity=0.139 Sum_probs=57.7
Q ss_pred cEEEEEeCccccCCccHHHHHHHhcCCCCCCcccEEEEEEcCCcccccCCCCCcccccHHHHHhhcCccEEEEeCCCHHH
Q 001713 392 NMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQVAFTTDPMSGRSSQYCTDVAKALDAPIFHVNGDDMEA 471 (1021)
Q Consensus 392 ~v~v~~~GDgA~sGqG~v~EalnlA~LP~y~~GGvI~Vv~NNq~g~tT~~~~~rs~~~~sd~Aka~g~p~~~VdG~D~eA 471 (1021)
.++++..|=|++++-.-++++. ..+.| +|+|.-.-.. +.......-..+...+++.+---..+|+ +++.
T Consensus 69 gv~~~t~GpG~~n~l~gia~A~-~~~~P------vl~i~G~~~~--~~~~~~~~q~~d~~~~~~~itk~~~~v~--~~~~ 137 (572)
T PRK08979 69 GVVLVTSGPGATNTITGIATAY-MDSIP------MVVLSGQVPS--NLIGNDAFQECDMIGISRPVVKHSFLVK--DAED 137 (572)
T ss_pred eEEEECCCchHhHHHHHHHHHh-hcCCC------EEEEecCCCc--cccCCCCCcccchhHHhhhceeEEEecC--CHHH
Confidence 4566666888887555555543 23999 8888642211 1000111111244455666555555665 7899
Q ss_pred HHHHHHHHHHHHHccC-CCEEEEEe
Q 001713 472 VAHVCELAAEWRQTFH-SDVVVDLV 495 (1021)
Q Consensus 472 V~~a~~~A~e~rr~~~-gPvlIe~v 495 (1021)
+...++.|+..++.+. |||.|++=
T Consensus 138 ~~~~l~~A~~~A~~~~~GPV~l~iP 162 (572)
T PRK08979 138 IPEIIKKAFYIASTGRPGPVVIDLP 162 (572)
T ss_pred HHHHHHHHHHHHhCCCCCcEEEecC
Confidence 9999999999888876 89999983
No 234
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=33.11 E-value=1.7e+02 Score=36.30 Aligned_cols=93 Identities=14% Similarity=0.096 Sum_probs=58.0
Q ss_pred cEEEEEeCccccCCccHHHHHHHhcCCCCCCcccEEEEEEcCCcccccCCCCCcccccHHHHHhhcCccEEEEeCCCHHH
Q 001713 392 NMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQVAFTTDPMSGRSSQYCTDVAKALDAPIFHVNGDDMEA 471 (1021)
Q Consensus 392 ~v~v~~~GDgA~sGqG~v~EalnlA~LP~y~~GGvI~Vv~NNq~g~tT~~~~~rs~~~~sd~Aka~g~p~~~VdG~D~eA 471 (1021)
.++++..|=|.++.-.-++||. ..+.| +|+|+-.-.. ........-.-+..++++.+---..+|+ +++.
T Consensus 65 gv~~~t~GPG~~n~l~~i~~A~-~~~~P------vl~I~G~~~~--~~~~~~~~q~~d~~~l~~~~tk~s~~v~--~~~~ 133 (586)
T PRK06276 65 GVCVATSGPGATNLVTGIATAY-ADSSP------VIALTGQVPT--KLIGNDAFQEIDALGIFMPITKHNFQIK--KPEE 133 (586)
T ss_pred EEEEECCCccHHHHHHHHHHHH-hcCCC------EEEEeCCCCc--cccCCCCCccccHhhHHhhhcceEEecC--CHHH
Confidence 5666667888877544455543 23999 8888742111 1100111111245556666666566664 7888
Q ss_pred HHHHHHHHHHHHHccC-CCEEEEEe
Q 001713 472 VAHVCELAAEWRQTFH-SDVVVDLV 495 (1021)
Q Consensus 472 V~~a~~~A~e~rr~~~-gPvlIe~v 495 (1021)
+..++..|+..+..+. |||.|++=
T Consensus 134 i~~~i~~A~~~A~~~~~GPV~l~iP 158 (586)
T PRK06276 134 IPEIFRAAFEIAKTGRPGPVHIDLP 158 (586)
T ss_pred HHHHHHHHHHHhcCCCCCcEEEEcC
Confidence 8889999998888774 89999984
No 235
>cd02001 TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) family, ComE and PpyrDC subfamily, TPP-binding module; composed of proteins similar to sulfopyruvate decarboxylase beta subunit (ComE) and phosphonopyruvate decarboxylase (Ppyr decarboxylase). Methanococcus jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits which, catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. Ppyr decarboxylase is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. Ppyr decarboxylase and ComDE require TPP and divalent metal cation cofactors.
Probab=32.80 E-value=1.2e+02 Score=31.11 Aligned_cols=30 Identities=7% Similarity=0.220 Sum_probs=24.8
Q ss_pred cCeEEEecCCHHHHHHHHHHHHhcCCCCcEEE
Q 001713 809 CNWQIVNVTTPANYFHVLRRQIHREFRKPLVV 840 (1021)
Q Consensus 809 ~Nl~Vv~pstpad~fhlLrrqi~~~~~kPliv 840 (1021)
.++.-+...|+++....|++++.. ++|.+|
T Consensus 121 ~G~~~~~v~~~~el~~al~~a~~~--~gp~vi 150 (157)
T cd02001 121 CGYLVLSAPLLGGLGSEFAGLLAT--TGPTLL 150 (157)
T ss_pred CCCceEEcCCHHHHHHHHHHHHhC--CCCEEE
Confidence 356677789999999999999875 788876
No 236
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=32.62 E-value=1.4e+02 Score=37.06 Aligned_cols=164 Identities=18% Similarity=0.159 Sum_probs=88.8
Q ss_pred CCccchHHHHHHHHHHHhhCCCCcEEEcCCcccHHHHHHHhcCCCHHHHHHHhcCCCCCCCCCCcccCCCCccccccccC
Q 001713 266 EGGETLIPGMKEMFDRAADLGVESIVIGMPHRGRLNVLGNVVRKPLRQIFSEFSGGTRPVDEVGLYTGTGDVKYHLGTSY 345 (1021)
Q Consensus 266 eG~Ea~i~gl~~~l~~a~~~g~~D~vigm~HRgrln~La~v~g~~~~~if~Ef~G~~~~~~~G~~~gGsgDvkyHlg~s~ 345 (1021)
.-++....+...+++.-.++|++. ||| +-|-....|+.++.- .. ++++... ..
T Consensus 15 ~~~~~~~~~a~~l~~~L~~~GV~~-vFg------------vpG~~~~~l~dal~~-~~------------~i~~i~~-rh 67 (587)
T PRK06965 15 SPPAADSIGAEILMKALAAEGVEF-IWG------------YPGGAVLYIYDELYK-QD------------KIQHVLV-RH 67 (587)
T ss_pred CCCchhccHHHHHHHHHHHcCCCE-EEe------------cCCcchHHHHHHHhh-cC------------CCeEEEe-CC
Confidence 345555666677777767789976 777 224555566666631 10 1223332 11
Q ss_pred CCCCCCCcceeeeeccccCCcccccceeehHHHHhHHhcCCCCCCCcEEEEEeCccccCCccHHHHHHHhcCCCCCCccc
Q 001713 346 DRPTRGGKRIHLSLVANPSHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGG 425 (1021)
Q Consensus 346 ~~~~~~g~~i~l~l~~npShlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDgA~sGqG~v~EalnlA~LP~y~~GG 425 (1021)
+ ....-.|.|.|++.. + -.++++..|=|+++.=.-++++. ..+.|
T Consensus 68 E--------------------~~A~~~AdgYar~tg---~-----~gv~~~t~GpG~~N~l~gl~~A~-~~~~P------ 112 (587)
T PRK06965 68 E--------------------QAAVHAADGYARATG---K-----VGVALVTSGPGVTNAVTGIATAY-MDSIP------ 112 (587)
T ss_pred H--------------------HHHHHHHHHHHHHhC---C-----CeEEEECCCccHHHHHHHHHHHh-hcCCC------
Confidence 1 111124555555432 1 14566666777776333333332 22999
Q ss_pred EEEEEEcCCcccccCCCCCcccccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccC-CCEEEEEe
Q 001713 426 TIHIVVNNQVAFTTDPMSGRSSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFH-SDVVVDLV 495 (1021)
Q Consensus 426 vI~Vv~NNq~g~tT~~~~~rs~~~~sd~Aka~g~p~~~VdG~D~eAV~~a~~~A~e~rr~~~-gPvlIe~v 495 (1021)
+|+|.-. ..............+..++++.+---..+|. +++.+...+..|+..++.+. |||.|++=
T Consensus 113 vl~i~G~--~~~~~~~~~~~q~~d~~~l~~~itk~~~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP 179 (587)
T PRK06965 113 MVVISGQ--VPTAAIGQDAFQECDTVGITRPIVKHNFLVK--DVRDLAETVKKAFYIARTGRPGPVVVDIP 179 (587)
T ss_pred EEEEecC--CCccccCCCCcccccHHHHhcCCcceeEEeC--CHHHHHHHHHHHHHHHhcCCCCeEEEEeC
Confidence 8888621 1111000111111234445555555555665 78888889999998888874 99999983
No 237
>PRK08266 hypothetical protein; Provisional
Probab=32.33 E-value=2.1e+02 Score=35.06 Aligned_cols=93 Identities=5% Similarity=0.002 Sum_probs=57.5
Q ss_pred cEEEEEeCccccCCccHHHHHHHhcCCCCCCcccEEEEEEcCCcccccCCCC--Ccc-cccHHHHHhhcCccEEEEeCCC
Q 001713 392 NMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQVAFTTDPMS--GRS-SQYCTDVAKALDAPIFHVNGDD 468 (1021)
Q Consensus 392 ~v~v~~~GDgA~sGqG~v~EalnlA~LP~y~~GGvI~Vv~NNq~g~tT~~~~--~rs-~~~~sd~Aka~g~p~~~VdG~D 468 (1021)
.++++..|=|+++.-.-++|+. ..+.| +|+|+-. ...+..... +.. ..+..++++.+---...|+ +
T Consensus 70 ~v~~~t~GpG~~N~~~gi~~A~-~~~~P------vl~i~g~--~~~~~~~~~~~~~~~~~d~~~~~~~~tk~~~~v~--~ 138 (542)
T PRK08266 70 GVCSVVPGPGVLNAGAALLTAY-GCNSP------VLCLTGQ--IPSALIGKGRGHLHEMPDQLATLRSFTKWAERIE--H 138 (542)
T ss_pred eEEEECCCCcHHHHHHHHHHHH-hhCCC------EEEEecC--CChhhccCCCCcceecccHhhHHhhhcceEEEeC--C
Confidence 4666667888887555555543 33999 8888742 111100000 001 1245566666655566665 6
Q ss_pred HHHHHHHHHHHHHHHHcc-CCCEEEEEe
Q 001713 469 MEAVAHVCELAAEWRQTF-HSDVVVDLV 495 (1021)
Q Consensus 469 ~eAV~~a~~~A~e~rr~~-~gPvlIe~v 495 (1021)
++.+..+++.|+..+..+ .|||+|++=
T Consensus 139 ~~~~~~~l~~A~~~a~~~~~GPV~l~iP 166 (542)
T PRK08266 139 PSEAPALVAEAFQQMLSGRPRPVALEMP 166 (542)
T ss_pred HHHHHHHHHHHHHHHhhCCCCcEEEEeC
Confidence 788888888888877775 589999984
No 238
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=31.98 E-value=1.4e+02 Score=36.89 Aligned_cols=93 Identities=12% Similarity=0.087 Sum_probs=57.5
Q ss_pred cEEEEEeCccccCCccHHHHHHHhcCCCCCCcccEEEEEEcCCcccccCCCCCcccccHHHHHhhcCccEEEEeCCCHHH
Q 001713 392 NMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQVAFTTDPMSGRSSQYCTDVAKALDAPIFHVNGDDMEA 471 (1021)
Q Consensus 392 ~v~v~~~GDgA~sGqG~v~EalnlA~LP~y~~GGvI~Vv~NNq~g~tT~~~~~rs~~~~sd~Aka~g~p~~~VdG~D~eA 471 (1021)
.++++..|=|+++.-.-++|+. ..+.| +|+|.-.-... .......-..+...+++.+---..+|+ +++.
T Consensus 69 gv~~~t~GpG~~N~l~~i~~A~-~~~~P------vlvi~G~~~~~--~~~~~~~q~~d~~~l~~~vtk~s~~v~--~~~~ 137 (574)
T PRK06882 69 GCVLVTSGPGATNAITGIATAY-TDSVP------LVILSGQVPSN--LIGTDAFQECDMLGISRPVVKHSFIVK--NAED 137 (574)
T ss_pred eEEEECCCccHHHHHHHHHHHh-hcCCC------EEEEecCCCcc--ccCCCcccccchhhhhhcccceEEEeC--CHHH
Confidence 5666667888887555555554 23999 88886422211 000011111234455665555566664 7888
Q ss_pred HHHHHHHHHHHHHccC-CCEEEEEe
Q 001713 472 VAHVCELAAEWRQTFH-SDVVVDLV 495 (1021)
Q Consensus 472 V~~a~~~A~e~rr~~~-gPvlIe~v 495 (1021)
+...+..|+..+..+. |||.|++=
T Consensus 138 ~~~~l~~A~~~A~~~~~GPV~l~iP 162 (574)
T PRK06882 138 IPSTIKKAFYIASTGRPGPVVIDIP 162 (574)
T ss_pred HHHHHHHHHHHHhcCCCCCEEEecC
Confidence 8888889988777764 99999984
No 239
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=31.87 E-value=30 Score=32.92 Aligned_cols=69 Identities=25% Similarity=0.364 Sum_probs=42.1
Q ss_pred EEEeCccccCCccHHHHHHHhcCCCCCCcccEEEEEEcCCcccccCCCCCcccccHHHHHhhcCccEEEEeCCCHHHHHH
Q 001713 395 VLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQVAFTTDPMSGRSSQYCTDVAKALDAPIFHVNGDDMEAVAH 474 (1021)
Q Consensus 395 v~~~GDgA~sGqG~v~EalnlA~LP~y~~GGvI~Vv~NNq~g~tT~~~~~rs~~~~sd~Aka~g~p~~~VdG~D~eAV~~ 474 (1021)
+++.|+-.+.|--.+.+.|.-...| ++++.||- .++...+.++.+..|+++ +++.++-
T Consensus 8 vl~~g~~~ipga~e~l~~L~~~g~~-------~~~lTNns---------~~s~~~~~~~L~~~Gi~~------~~~~i~t 65 (101)
T PF13344_consen 8 VLYNGNEPIPGAVEALDALRERGKP-------VVFLTNNS---------SRSREEYAKKLKKLGIPV------DEDEIIT 65 (101)
T ss_dssp TSEETTEE-TTHHHHHHHHHHTTSE-------EEEEES-S---------SS-HHHHHHHHHHTTTT--------GGGEEE
T ss_pred EeEeCCCcCcCHHHHHHHHHHcCCC-------EEEEeCCC---------CCCHHHHHHHHHhcCcCC------CcCEEEC
Confidence 3456777877544445555554666 77888884 233345667778899984 3466777
Q ss_pred HHHHHHHHHHc
Q 001713 475 VCELAAEWRQT 485 (1021)
Q Consensus 475 a~~~A~e~rr~ 485 (1021)
....+.+|.++
T Consensus 66 s~~~~~~~l~~ 76 (101)
T PF13344_consen 66 SGMAAAEYLKE 76 (101)
T ss_dssp HHHHHHHHHHH
T ss_pred hHHHHHHHHHh
Confidence 77777777776
No 240
>PF07295 DUF1451: Protein of unknown function (DUF1451); InterPro: IPR009912 This family consists of several hypothetical bacterial proteins of around 160 residues in length. Members of this family contain four highly conserved cysteine resides toward the C-terminal region of the protein. The function of this family is unknown.
Probab=31.55 E-value=2.2e+02 Score=29.41 Aligned_cols=41 Identities=20% Similarity=0.223 Sum_probs=35.4
Q ss_pred CHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHchh
Q 001713 524 SSLEIYQNKLLECQHVTQEDINKIQEKVNRILSEEFVASKD 564 (1021)
Q Consensus 524 dpi~~y~~~Li~~Gi~t~ee~~~i~~~~~~~l~~a~~~A~~ 564 (1021)
..++.-++++.+.|-+|++|++.+.+.++..|++..+....
T Consensus 18 ~~le~a~e~~~~~~elT~eEl~lv~~ylkRDl~~~a~~~~~ 58 (146)
T PF07295_consen 18 EALEKAKEYLVAAGELTREELALVSAYLKRDLEEFARYYEE 58 (146)
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44677889999999999999999999999999988776654
No 241
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=30.66 E-value=2.1e+02 Score=35.21 Aligned_cols=92 Identities=13% Similarity=0.146 Sum_probs=58.1
Q ss_pred cEEEEEeCccccCCccHHHHHHHhcCCCCCCcccEEEEEEcCCcccccCCCCCcccccHHHHHhhcCccEEEEeCCCHHH
Q 001713 392 NMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQVAFTTDPMSGRSSQYCTDVAKALDAPIFHVNGDDMEA 471 (1021)
Q Consensus 392 ~v~v~~~GDgA~sGqG~v~EalnlA~LP~y~~GGvI~Vv~NNq~g~tT~~~~~rs~~~~sd~Aka~g~p~~~VdG~D~eA 471 (1021)
.++++..|=|+++.-.-++||. ..++| +|+|+-.-.. ........-..+..++++.+-.-..+|+ +++.
T Consensus 66 gv~~~t~GpG~~n~l~~i~~A~-~~~~P------vl~i~g~~~~--~~~~~~~~q~~d~~~~~~~~tk~~~~v~--~~~~ 134 (558)
T TIGR00118 66 GVVLVTSGPGATNLVTGIATAY-MDSIP------MVVFTGQVPT--SLIGSDAFQEADILGITMPITKHSFQVK--SAED 134 (558)
T ss_pred EEEEECCCCcHHHHHHHHHHHH-hcCCC------EEEEecCCCc--cccCCCCCcccChhhhhcCccceeEEeC--CHHH
Confidence 5677777888777444444443 22999 9988753211 1001111111244556666666667774 7888
Q ss_pred HHHHHHHHHHHHHccC-CCEEEEE
Q 001713 472 VAHVCELAAEWRQTFH-SDVVVDL 494 (1021)
Q Consensus 472 V~~a~~~A~e~rr~~~-gPvlIe~ 494 (1021)
+..++..|+..+..+. |||.|++
T Consensus 135 ~~~~v~~A~~~A~~~~~GPV~i~i 158 (558)
T TIGR00118 135 IPRIIKEAFHIATTGRPGPVLVDL 158 (558)
T ss_pred HHHHHHHHHHHHhcCCCCeEEEEc
Confidence 9999999998888875 8999998
No 242
>PRK06154 hypothetical protein; Provisional
Probab=30.46 E-value=1.3e+02 Score=37.35 Aligned_cols=91 Identities=13% Similarity=0.058 Sum_probs=54.1
Q ss_pred cEEEEEeCccccCCccHHHHHHHhcCCCCCCcccEEEEEEcCCcccccCCCCCcccccHHHHHhhcCccEEEEeCCCHHH
Q 001713 392 NMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQVAFTTDPMSGRSSQYCTDVAKALDAPIFHVNGDDMEA 471 (1021)
Q Consensus 392 ~v~v~~~GDgA~sGqG~v~EalnlA~LP~y~~GGvI~Vv~NNq~g~tT~~~~~rs~~~~sd~Aka~g~p~~~VdG~D~eA 471 (1021)
.++++..|=|+++.-.-++++. ..+.| +|+|+-........ .. ...+..++++.+---..+| ++++.
T Consensus 83 gv~~~t~GPG~~N~~~gla~A~-~~~~P------vl~i~G~~~~~~~~--~~--~~~d~~~~~~~vtk~~~~v--~~~~~ 149 (565)
T PRK06154 83 GVFAVQYGPGAENAFGGVAQAY-GDSVP------VLFLPTGYPRGSTD--VA--PNFESLRNYRHITKWCEQV--TLPDE 149 (565)
T ss_pred EEEEECCCccHHHHHHHHHHHh-hcCCC------EEEEeCCCCccccc--CC--CCcchhhhHhhcceeEEEC--CCHHH
Confidence 4555566888877444444433 23999 99987543221100 00 0112234444443334444 47888
Q ss_pred HHHHHHHHHHHHHcc-CCCEEEEEe
Q 001713 472 VAHVCELAAEWRQTF-HSDVVVDLV 495 (1021)
Q Consensus 472 V~~a~~~A~e~rr~~-~gPvlIe~v 495 (1021)
+..+++.|+..++.+ .|||+|++=
T Consensus 150 ~~~~i~~A~~~A~s~~~GPV~l~iP 174 (565)
T PRK06154 150 VPELMRRAFTRLRNGRPGPVVLELP 174 (565)
T ss_pred HHHHHHHHHHHHhcCCCceEEEecc
Confidence 999999999888886 589999984
No 243
>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=30.22 E-value=1.6e+02 Score=32.08 Aligned_cols=49 Identities=20% Similarity=0.358 Sum_probs=39.9
Q ss_pred hHHHHHHHHHHHhhCCCCcEEEcCCcccHHHHHHHhcCCCHHHHHHHhc
Q 001713 271 LIPGMKEMFDRAADLGVESIVIGMPHRGRLNVLGNVVRKPLRQIFSEFS 319 (1021)
Q Consensus 271 ~i~gl~~~l~~a~~~g~~D~vigm~HRgrln~La~v~g~~~~~if~Ef~ 319 (1021)
+.||+..+...--+.|++=+++.--.|...+..+..+|.|...+++..+
T Consensus 89 lT~Gi~eLv~~L~~~~~~v~liSGGF~~~i~~Va~~Lgi~~~n~yAN~l 137 (227)
T KOG1615|consen 89 LTPGIRELVSRLHARGTQVYLISGGFRQLIEPVAEQLGIPKSNIYANEL 137 (227)
T ss_pred cCCCHHHHHHHHHHcCCeEEEEcCChHHHHHHHHHHhCCcHhhhhhhee
Confidence 4577777776666678887888778999999999999999999998654
No 244
>cd02009 TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) family, SHCHC synthase subfamily, TPP-binding module; composed of proteins similar to Escherichia coli 2-succinyl-6-hydroxyl-2,4-cyclohexadiene-1-carboxylic acid (SHCHC) synthase (also called MenD). SHCHC synthase plays a key role in the menaquinone biosynthetic pathway, converting isochorismate and 2-oxoglutarate to SHCHC, pyruvate and carbon dioxide. The enzyme requires TPP and a divalent metal cation for activity.
Probab=28.75 E-value=1.6e+02 Score=30.61 Aligned_cols=118 Identities=16% Similarity=0.155 Sum_probs=63.2
Q ss_pred cCccchHH-HHHHHHhhccCCCCcceEehhhhhhhHhhHHHHHHHHHhhhhhhhcCccceEEEeCc--cCC--CCCcCCc
Q 001713 703 NSSLSEFG-VLGFELGYSMENPNSLVMWEAQFGDFANGAQVIFDQFVNSGESKWLRQSGLVVMLPH--GYD--GQGPEHS 777 (1021)
Q Consensus 703 nspLSE~~-vlGfe~G~a~~g~~~lviwEaqFgDF~n~Aq~~iDqfi~s~~~kw~~~~~lV~~lPh--G~~--G~GpeHS 777 (1021)
++.++-.+ -++++.|++++..++++ +--||=...- --|=+. ..-..+.|+++.+=. ||. .....+.
T Consensus 47 ~~g~g~mG~~l~~aiGa~la~~~~Vv---~i~GDGsf~m---~~~eL~---ta~~~~l~v~ivVlNN~~~g~~~~~~~~~ 117 (175)
T cd02009 47 NRGASGIDGTLSTALGIALATDKPTV---LLTGDLSFLH---DLNGLL---LGKQEPLNLTIVVINNNGGGIFSLLPQAS 117 (175)
T ss_pred cCCccchhhHHHHHHHHHhcCCCCEE---EEEehHHHHH---hHHHHH---hccccCCCeEEEEEECCCCchheeccCCc
Confidence 55554332 56888888887667777 5778854321 112111 111235676665532 552 2222221
Q ss_pred Cc-hhhHhhhccCCCCCcccCCCchhhhcccccCeEEEecCCHHHHHHHHHHHHhcCCCCcEEE
Q 001713 778 SA-RLERFLQMSDDNPYVIPEMDSTLRTQIQECNWQIVNVTTPANYFHVLRRQIHREFRKPLVV 840 (1021)
Q Consensus 778 s~-r~Er~Lql~~e~~~~~~~ipg~~~~~~~~~Nl~Vv~pstpad~fhlLrrqi~~~~~kPliv 840 (1021)
.. +...... . + .+-+..+-.+-.++.-...+|+++....|++++.. ++|.+|
T Consensus 118 ~~~~~~~~~~--~------~-~~~d~~~lA~a~G~~~~~v~~~~el~~al~~a~~~--~~p~lI 170 (175)
T cd02009 118 FEDEFERLFG--T------P-QGLDFEHLAKAYGLEYRRVSSLDELEQALESALAQ--DGPHVI 170 (175)
T ss_pred ccchhhhhhc--C------C-CCCCHHHHHHHcCCCeeeCCCHHHHHHHHHHHHhC--CCCEEE
Confidence 11 1111100 0 0 01123333444567788889999999999999875 789876
No 245
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=28.74 E-value=2.2e+02 Score=35.39 Aligned_cols=93 Identities=11% Similarity=0.058 Sum_probs=56.1
Q ss_pred cEEEEEeCccccCCccHHHHHHHhcCCCCCCcccEEEEEEcCCcccccCCCCCcccccHHHHHhhcCccEEEEeCCCHHH
Q 001713 392 NMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQVAFTTDPMSGRSSQYCTDVAKALDAPIFHVNGDDMEA 471 (1021)
Q Consensus 392 ~v~v~~~GDgA~sGqG~v~EalnlA~LP~y~~GGvI~Vv~NNq~g~tT~~~~~rs~~~~sd~Aka~g~p~~~VdG~D~eA 471 (1021)
.++++..|=|+++.-.-++++. ..+.| +|+|+-.-... ..........+...+++.+--...+|+ +++.
T Consensus 78 gv~~~t~GPG~~N~l~gl~~A~-~~~~P------vl~I~G~~~~~--~~~~~~~q~~d~~~~~~~~tk~~~~v~--~~~~ 146 (585)
T CHL00099 78 GVCFATSGPGATNLVTGIATAQ-MDSVP------LLVITGQVGRA--FIGTDAFQEVDIFGITLPIVKHSYVVR--DARD 146 (585)
T ss_pred EEEEECCCCcHHHHHHHHHHHh-hcCCC------EEEEecCCCcc--ccCCCCccccchhhhhcCceeEEEEeC--CHHH
Confidence 5666666888777444444443 33999 88887421100 000011111233444555545566665 7899
Q ss_pred HHHHHHHHHHHHHccC-CCEEEEEe
Q 001713 472 VAHVCELAAEWRQTFH-SDVVVDLV 495 (1021)
Q Consensus 472 V~~a~~~A~e~rr~~~-gPvlIe~v 495 (1021)
+..+++.|+..++.+. |||.|++=
T Consensus 147 i~~~l~~A~~~A~~~~~GPV~l~iP 171 (585)
T CHL00099 147 ISRIVAEAFYIAKHGRPGPVLIDIP 171 (585)
T ss_pred HHHHHHHHHHHHccCCCCeEEEecC
Confidence 9999999998887764 89999984
No 246
>PRK05858 hypothetical protein; Provisional
Probab=28.20 E-value=1.6e+02 Score=36.09 Aligned_cols=92 Identities=15% Similarity=0.095 Sum_probs=55.1
Q ss_pred cEEEEEeCccccCCccHHHHHHHhcCCCCCCcccEEEEEEcCCcccccCCCCCcccccHHHHHhhcCccEEEEeCCCHHH
Q 001713 392 NMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQVAFTTDPMSGRSSQYCTDVAKALDAPIFHVNGDDMEA 471 (1021)
Q Consensus 392 ~v~v~~~GDgA~sGqG~v~EalnlA~LP~y~~GGvI~Vv~NNq~g~tT~~~~~rs~~~~sd~Aka~g~p~~~VdG~D~eA 471 (1021)
.++++..|=|++++-.-++|+. ..+.| +|+|.-+-.... ......-..+...+++.+---..+|+ +++.
T Consensus 69 gv~~~t~GpG~~n~~~~i~~A~-~~~~P------vl~i~g~~~~~~--~~~~~~q~~d~~~l~~~~tk~~~~v~--~~~~ 137 (542)
T PRK05858 69 GVAVLTAGPGVTNGMSAMAAAQ-FNQSP------LVVLGGRAPALR--WGMGSLQEIDHVPFVAPVTKFAATAQ--SAEN 137 (542)
T ss_pred eEEEEcCCchHHHHHHHHHHHH-hcCCC------EEEEeCCCCccc--CCCCCCcccchhhhhhhhhceEEEeC--CHHH
Confidence 4555556777777544455443 23999 887764222110 00111112244555666555556664 5788
Q ss_pred HHHHHHHHHHHHHcc-CCCEEEEE
Q 001713 472 VAHVCELAAEWRQTF-HSDVVVDL 494 (1021)
Q Consensus 472 V~~a~~~A~e~rr~~-~gPvlIe~ 494 (1021)
+..++..|+.-+..+ .|||.|++
T Consensus 138 ~~~~i~~A~~~A~~~~~GPV~l~i 161 (542)
T PRK05858 138 AGRLVDQALQAAVTPHRGPVFVDF 161 (542)
T ss_pred HHHHHHHHHHHHcCCCCCeEEEEc
Confidence 888888888877776 48999998
No 247
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=28.13 E-value=2.4e+02 Score=34.95 Aligned_cols=93 Identities=10% Similarity=0.119 Sum_probs=53.5
Q ss_pred cEEEEEeCccccCCccHHHHHHHhcCCCCCCcccEEEEEEcCCcccccCCCCCcccccHHHHHhhcCccEEEEeCCCHHH
Q 001713 392 NMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQVAFTTDPMSGRSSQYCTDVAKALDAPIFHVNGDDMEA 471 (1021)
Q Consensus 392 ~v~v~~~GDgA~sGqG~v~EalnlA~LP~y~~GGvI~Vv~NNq~g~tT~~~~~rs~~~~sd~Aka~g~p~~~VdG~D~eA 471 (1021)
.++++..|=|+++.=.-++||. ..+.| +|+|.-.-... .......-.-+...+++.+---..+| .+++.
T Consensus 80 gv~~~t~GPG~~N~~~gl~~A~-~~~~P------vl~ItG~~~~~--~~~~~~~q~~d~~~l~~~~tk~~~~v--~~~~~ 148 (571)
T PRK07710 80 GVVIATSGPGATNVVTGLADAM-IDSLP------LVVFTGQVATS--VIGSDAFQEADIMGITMPVTKHNYQV--RKASD 148 (571)
T ss_pred eEEEECCCccHHHHHHHHHHHh-hcCCC------EEEEeccCCcc--ccCCCCccccchhhhhhcccceEEec--CCHHH
Confidence 4566666777776333344433 22999 88887533321 00011111112333343332223334 57888
Q ss_pred HHHHHHHHHHHHHccC-CCEEEEEe
Q 001713 472 VAHVCELAAEWRQTFH-SDVVVDLV 495 (1021)
Q Consensus 472 V~~a~~~A~e~rr~~~-gPvlIe~v 495 (1021)
+..+++.|+..++.+. |||.|++=
T Consensus 149 ~~~~i~~A~~~A~~~~~GPV~l~iP 173 (571)
T PRK07710 149 LPRIIKEAFHIATTGRPGPVLIDIP 173 (571)
T ss_pred HHHHHHHHHHHHhcCCCCcEEEEcC
Confidence 9999999998888774 99999985
No 248
>PLN02573 pyruvate decarboxylase
Probab=27.68 E-value=1.4e+02 Score=37.08 Aligned_cols=94 Identities=13% Similarity=0.050 Sum_probs=53.8
Q ss_pred cEEEEEeCccccCCccHHHHHHHhcCCCCCCcccEEEEEEcCCcccc-cCC--CC---CcccccHHHHHhhcCccEEEEe
Q 001713 392 NMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQVAFT-TDP--MS---GRSSQYCTDVAKALDAPIFHVN 465 (1021)
Q Consensus 392 ~v~v~~~GDgA~sGqG~v~EalnlA~LP~y~~GGvI~Vv~NNq~g~t-T~~--~~---~rs~~~~sd~Aka~g~p~~~Vd 465 (1021)
.++++..|=|+++.-.-++++. ..+.| +|+|+-.-..... +.. +. ........+.++.+-.-..+|.
T Consensus 80 gv~~~t~GpG~~n~~~gla~A~-~d~~P------vl~I~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~itk~s~~v~ 152 (578)
T PLN02573 80 GACVVTFTVGGLSVLNAIAGAY-SENLP------VICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCYQAVIN 152 (578)
T ss_pred CeEEEecCccHHHHHHHHHHHH-HhCCC------EEEEECCCChhhhhcCceeeeecCCCChHHHHHHhhceEEEEEEeC
Confidence 5778888888877434444433 23999 9998754332110 000 00 0000011233443333344443
Q ss_pred CCCHHHHHHHHHHHHHHHHccCCCEEEEE
Q 001713 466 GDDMEAVAHVCELAAEWRQTFHSDVVVDL 494 (1021)
Q Consensus 466 G~D~eAV~~a~~~A~e~rr~~~gPvlIe~ 494 (1021)
+++.+...++.|+..++...|||.|++
T Consensus 153 --~~~~~~~~l~~A~~~A~~~~gPV~l~i 179 (578)
T PLN02573 153 --NLEDAHELIDTAISTALKESKPVYISV 179 (578)
T ss_pred --CHHHHHHHHHHHHHHHHhcCCCEEEEe
Confidence 678888888888888888889999998
No 249
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=27.20 E-value=2e+02 Score=35.68 Aligned_cols=93 Identities=13% Similarity=0.065 Sum_probs=53.2
Q ss_pred cEEEEEeCccccCCccHHHHHHHhcCCCCCCcccEEEEEEcCCcccccCCCCCcccccHHHHHhhcCccEEEEeCCCHHH
Q 001713 392 NMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQVAFTTDPMSGRSSQYCTDVAKALDAPIFHVNGDDMEA 471 (1021)
Q Consensus 392 ~v~v~~~GDgA~sGqG~v~EalnlA~LP~y~~GGvI~Vv~NNq~g~tT~~~~~rs~~~~sd~Aka~g~p~~~VdG~D~eA 471 (1021)
.++++..|=|+++.-+-++++. ..++| +|+|+-.-... .......-..+...+++.+---...| .+++.
T Consensus 65 gv~~~t~GPG~~n~~~~i~~A~-~~~~P------vl~I~G~~~~~--~~~~~~~q~id~~~~~~~vtk~~~~v--~~~~~ 133 (575)
T TIGR02720 65 GVCFGSAGPGATHLLNGLYDAK-EDHVP------VLALVGQVPTT--GMNMDTFQEMNENPIYADVAVYNRTA--MTAES 133 (575)
T ss_pred eEEEeCCCCcHHHHHHHHHHHh-hcCCC------EEEEecCCccc--cCCCCCcceechhhhhhhcceEEEEe--CCHHH
Confidence 5667777888877555555544 23999 89887533221 00011111112233344333323344 35777
Q ss_pred HHHHHHHHHHHHHccCCCEEEEEe
Q 001713 472 VAHVCELAAEWRQTFHSDVVVDLV 495 (1021)
Q Consensus 472 V~~a~~~A~e~rr~~~gPvlIe~v 495 (1021)
+...+..|+..+....|||.|++=
T Consensus 134 ~~~~i~~A~~~A~~~~GPV~l~iP 157 (575)
T TIGR02720 134 LPHVIDEAIRRAYAHNGVAVVTIP 157 (575)
T ss_pred HHHHHHHHHHHHhhCCCCEEEEEC
Confidence 777777777777778899999984
No 250
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=26.46 E-value=2.6e+02 Score=34.53 Aligned_cols=93 Identities=13% Similarity=0.126 Sum_probs=54.8
Q ss_pred cEEEEEeCccccCCccHHHHHHHhcCCCCCCcccEEEEEEcCCcccccCCCCCcccccHHHHHhhcCccEEEEeCCCHHH
Q 001713 392 NMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQVAFTTDPMSGRSSQYCTDVAKALDAPIFHVNGDDMEA 471 (1021)
Q Consensus 392 ~v~v~~~GDgA~sGqG~v~EalnlA~LP~y~~GGvI~Vv~NNq~g~tT~~~~~rs~~~~sd~Aka~g~p~~~VdG~D~eA 471 (1021)
.++++..|=|.++.-+-+++|. ..+.| +|+|.- |...........-.-+...+++.+---...| ++++.
T Consensus 68 gv~~~t~GpG~~n~~~gla~A~-~~~~P------vl~i~G--~~~~~~~~~~~~q~~d~~~~~~~~tk~s~~v--~~~~~ 136 (563)
T PRK08527 68 GVAIVTSGPGFTNAVTGLATAY-MDSIP------LVLISG--QVPNSLIGTDAFQEIDAVGISRPCVKHNYLV--KSIEE 136 (563)
T ss_pred EEEEECCCCcHHHHHHHHHHHh-hcCCC------EEEEec--CCCccccCCCCCcccchhhhhhcccceEEEc--CCHHH
Confidence 5666666877777444444443 22899 888863 1111100000011112333444443334444 68999
Q ss_pred HHHHHHHHHHHHHccC-CCEEEEEe
Q 001713 472 VAHVCELAAEWRQTFH-SDVVVDLV 495 (1021)
Q Consensus 472 V~~a~~~A~e~rr~~~-gPvlIe~v 495 (1021)
+..+++.|+..++.+. |||.|++=
T Consensus 137 i~~~l~~A~~~a~s~~~GPV~l~iP 161 (563)
T PRK08527 137 LPRILKEAFYIARSGRPGPVHIDIP 161 (563)
T ss_pred HHHHHHHHHHHHhcCCCCcEEEEcC
Confidence 9999999999888876 89999983
No 251
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=26.37 E-value=3e+02 Score=34.11 Aligned_cols=95 Identities=16% Similarity=0.132 Sum_probs=58.0
Q ss_pred cEEEEEeCccccCCccHHHHHHHhcCCCCCCcccEEEEEEcCCcccccCCCCCcccccHHHHHhhcCccEEEEeCCCHHH
Q 001713 392 NMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQVAFTTDPMSGRSSQYCTDVAKALDAPIFHVNGDDMEA 471 (1021)
Q Consensus 392 ~v~v~~~GDgA~sGqG~v~EalnlA~LP~y~~GGvI~Vv~NNq~g~tT~~~~~rs~~~~sd~Aka~g~p~~~VdG~D~eA 471 (1021)
.++++..|=|+++.=.-+++|. ..+.| +|+|+-.-....--.........+..++++.+---..+|+ +++.
T Consensus 74 gv~~~t~GPG~~N~l~gl~~A~-~~~~P------vl~I~G~~~~~~~~~~~~~~q~~d~~~~~~~~tk~s~~v~--~~~~ 144 (569)
T PRK09259 74 GVCLTVSAPGFLNGLTALANAT-TNCFP------MIMISGSSEREIVDLQQGDYEELDQLNAAKPFCKAAFRVN--RAED 144 (569)
T ss_pred EEEEEcCCccHHHHHHHHHHHH-hcCCC------EEEEEccCCcccccccCCCccccchhhhhhhheeeeEEcC--CHHH
Confidence 5666667888877433344333 22999 9998853221100000011112244456666666667775 7888
Q ss_pred HHHHHHHHHHHHHcc-CCCEEEEEe
Q 001713 472 VAHVCELAAEWRQTF-HSDVVVDLV 495 (1021)
Q Consensus 472 V~~a~~~A~e~rr~~-~gPvlIe~v 495 (1021)
+..++..|+..+..+ .|||.|++=
T Consensus 145 ~~~~i~~A~~~A~~~~~GPV~l~iP 169 (569)
T PRK09259 145 IGIGVARAIRTAVSGRPGGVYLDLP 169 (569)
T ss_pred HHHHHHHHHHHhhhCCCCcEEEEeC
Confidence 888889998888776 489999984
No 252
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=25.74 E-value=2.2e+02 Score=32.34 Aligned_cols=55 Identities=13% Similarity=0.236 Sum_probs=36.2
Q ss_pred CCCcEEEEEeCccccCCccHHHHHHHhc----CCCCCCcccEEEEEEcCCcccccCCCCCcccccHHHHHhhcCccEEEE
Q 001713 389 RTKNMAVLIHGDGSFAGQGVVYETLHLS----ALPNYSIGGTIHIVVNNQVAFTTDPMSGRSSQYCTDVAKALDAPIFHV 464 (1021)
Q Consensus 389 ~~~~v~v~~~GDgA~sGqG~v~EalnlA----~LP~y~~GGvI~Vv~NNq~g~tT~~~~~rs~~~~sd~Aka~g~p~~~V 464 (1021)
..++++|+.-|- |...+++--+ .||. =++.||.||. ++..+|+.+|+|.+++
T Consensus 83 ~~~ki~vl~Sg~------g~nl~~l~~~~~~g~l~~----~i~~visn~~--------------~~~~~A~~~gIp~~~~ 138 (280)
T TIGR00655 83 KLKRVAILVSKE------DHCLGDLLWRWYSGELDA----EIALVISNHE--------------DLRSLVERFGIPFHYI 138 (280)
T ss_pred CCcEEEEEEcCC------ChhHHHHHHHHHcCCCCc----EEEEEEEcCh--------------hHHHHHHHhCCCEEEc
Confidence 445777777655 4455555554 5652 1677777663 3455799999999999
Q ss_pred eCC
Q 001713 465 NGD 467 (1021)
Q Consensus 465 dG~ 467 (1021)
+-.
T Consensus 139 ~~~ 141 (280)
T TIGR00655 139 PAT 141 (280)
T ss_pred CCC
Confidence 864
No 253
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.
Probab=25.38 E-value=2e+02 Score=35.39 Aligned_cols=95 Identities=12% Similarity=0.077 Sum_probs=50.0
Q ss_pred cEEEEEeCccccCCccHHHHHHHhcCCCCCCcccEEEEEEcCCcccc-cCCCCCcccc---cHHHHHhhcCccEEEEeCC
Q 001713 392 NMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQVAFT-TDPMSGRSSQ---YCTDVAKALDAPIFHVNGD 467 (1021)
Q Consensus 392 ~v~v~~~GDgA~sGqG~v~EalnlA~LP~y~~GGvI~Vv~NNq~g~t-T~~~~~rs~~---~~sd~Aka~g~p~~~VdG~ 467 (1021)
.++++..|=|+++.=.-++++. ..++| +|+|.-+...... .......... +..++++.+---...| .
T Consensus 65 gv~~~t~GpG~~n~~~gia~A~-~~~~P------vl~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vtk~~~~v--~ 135 (535)
T TIGR03394 65 GVAAVTYGAGAFNMVNAIAGAY-AEKSP------VVVISGAPGTTEGNAGLLLHHQGRTLDSQFQVFKEVTCDQAVL--D 135 (535)
T ss_pred eEEEEecchHHHhhhhHHHHHh-hcCCC------EEEEECCCCcccccCCceeEeeccchHHHHHhhhhheEEEEEe--C
Confidence 5777777888887443344433 23999 8988754332110 0000000111 1223333332223333 3
Q ss_pred CHHHHHHHHHHHHHHHHccCCCEEEEEe
Q 001713 468 DMEAVAHVCELAAEWRQTFHSDVVVDLV 495 (1021)
Q Consensus 468 D~eAV~~a~~~A~e~rr~~~gPvlIe~v 495 (1021)
+++.+..+++.|+..+....|||+|++=
T Consensus 136 ~~~~~~~~~~~A~~~a~~~~gPv~i~iP 163 (535)
T TIGR03394 136 DPATAPAEIARVLGSARELSRPVYLEIP 163 (535)
T ss_pred ChHHhHHHHHHHHHHHHHCCCCEEEEec
Confidence 5666666666666666667789999984
No 254
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=25.14 E-value=2.3e+02 Score=32.30 Aligned_cols=54 Identities=15% Similarity=0.201 Sum_probs=36.1
Q ss_pred CCcEEEEEeCccccCCccHHHHHHHhc----CCCCCCcccEEEEEEcCCcccccCCCCCcccccHHHHHhhcCccEEEEe
Q 001713 390 TKNMAVLIHGDGSFAGQGVVYETLHLS----ALPNYSIGGTIHIVVNNQVAFTTDPMSGRSSQYCTDVAKALDAPIFHVN 465 (1021)
Q Consensus 390 ~~~v~v~~~GDgA~sGqG~v~EalnlA----~LP~y~~GGvI~Vv~NNq~g~tT~~~~~rs~~~~sd~Aka~g~p~~~Vd 465 (1021)
..+++|+.-|.|+ ..+++--+ .||. =++.|+.||. ++.++|+.+|+|.++++
T Consensus 93 ~~kiavl~Sg~g~------nl~al~~~~~~~~l~~----~i~~visn~~--------------~~~~~A~~~gIp~~~~~ 148 (289)
T PRK13010 93 RPKVVIMVSKFDH------CLNDLLYRWRMGELDM----DIVGIISNHP--------------DLQPLAVQHDIPFHHLP 148 (289)
T ss_pred CeEEEEEEeCCCc------cHHHHHHHHHCCCCCc----EEEEEEECCh--------------hHHHHHHHcCCCEEEeC
Confidence 4578888776655 44455444 5552 1667777764 34588999999999987
Q ss_pred CC
Q 001713 466 GD 467 (1021)
Q Consensus 466 G~ 467 (1021)
-.
T Consensus 149 ~~ 150 (289)
T PRK13010 149 VT 150 (289)
T ss_pred CC
Confidence 54
No 255
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=25.09 E-value=1.6e+02 Score=36.45 Aligned_cols=94 Identities=10% Similarity=0.046 Sum_probs=56.2
Q ss_pred cEEEEEeCccccCCccHHHHHHHhcCCCCCCcccEEEEEEcCCcccccCC----C--CCccc-ccHHHHHhhcCccEEEE
Q 001713 392 NMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQVAFTTDP----M--SGRSS-QYCTDVAKALDAPIFHV 464 (1021)
Q Consensus 392 ~v~v~~~GDgA~sGqG~v~EalnlA~LP~y~~GGvI~Vv~NNq~g~tT~~----~--~~rs~-~~~sd~Aka~g~p~~~V 464 (1021)
.++++..|=|+++.=.-++|+ ...+.| +|+|+-.-.....-.. . ..... .+..++++.+---...|
T Consensus 77 gv~~~t~GPG~~N~~~gla~A-~~d~~P------vl~I~G~~~~~~~~~~~~~~~~~~~~qe~~d~~~~~~~vtk~~~~v 149 (569)
T PRK08327 77 QAVMVHVDVGTANALGGVHNA-ARSRIP------VLVFAGRSPYTEEGELGSRNTRIHWTQEMRDQGGLVREYVKWDYEI 149 (569)
T ss_pred eEEEEecCHHHHHHHHHHHHH-hhcCCC------EEEEeccCCccccccccccccCcccchhhhhHHHHHhhhhhhhccc
Confidence 566667788887744444544 233999 8988764322110000 0 00011 13344455444444455
Q ss_pred eCCCHHHHHHHHHHHHHHHHcc-CCCEEEEE
Q 001713 465 NGDDMEAVAHVCELAAEWRQTF-HSDVVVDL 494 (1021)
Q Consensus 465 dG~D~eAV~~a~~~A~e~rr~~-~gPvlIe~ 494 (1021)
+ +++.+..++..|+..+..+ .|||+|++
T Consensus 150 ~--~~~~~~~~l~~A~~~a~~~~~GPV~i~i 178 (569)
T PRK08327 150 R--RGDQIGEVVARAIQIAMSEPKGPVYLTL 178 (569)
T ss_pred C--CHHHHHHHHHHHHHHHhcCCCCCEEEEC
Confidence 4 6888999999999888876 68999998
No 256
>PLN02331 phosphoribosylglycinamide formyltransferase
Probab=23.94 E-value=1.6e+02 Score=31.96 Aligned_cols=53 Identities=17% Similarity=0.296 Sum_probs=34.4
Q ss_pred EEEEEeCccccCCccHHHHHHHhc----CCCCCCcccEEEEEEcCCcccccCCCCCcccccHHHHHhhcCccEEEEeCC
Q 001713 393 MAVLIHGDGSFAGQGVVYETLHLS----ALPNYSIGGTIHIVVNNQVAFTTDPMSGRSSQYCTDVAKALDAPIFHVNGD 467 (1021)
Q Consensus 393 v~v~~~GDgA~sGqG~v~EalnlA----~LP~y~~GGvI~Vv~NNq~g~tT~~~~~rs~~~~sd~Aka~g~p~~~VdG~ 467 (1021)
++|++-| .|...+++--+ +|+. =+++||.||.- ....++|+.+|+|++..+-.
T Consensus 2 i~vl~Sg------~Gsn~~al~~~~~~~~l~~----~i~~visn~~~------------~~~~~~A~~~gIp~~~~~~~ 58 (207)
T PLN02331 2 LAVFVSG------GGSNFRAIHDACLDGRVNG----DVVVVVTNKPG------------CGGAEYARENGIPVLVYPKT 58 (207)
T ss_pred EEEEEeC------CChhHHHHHHHHHcCCCCe----EEEEEEEeCCC------------ChHHHHHHHhCCCEEEeccc
Confidence 4555554 55556666444 5552 17788888751 23467899999999987654
No 257
>PF10925 DUF2680: Protein of unknown function (DUF2680); InterPro: IPR024485 Members in this family of proteins are annotated as YckD however currently no function is known.
Probab=23.67 E-value=1.9e+02 Score=25.28 Aligned_cols=31 Identities=19% Similarity=0.251 Sum_probs=24.9
Q ss_pred HHHHHHHHccCCCHHHHHHHHHHHHHHHHHH
Q 001713 528 IYQNKLLECQHVTQEDINKIQEKVNRILSEE 558 (1021)
Q Consensus 528 ~y~~~Li~~Gi~t~ee~~~i~~~~~~~l~~a 558 (1021)
..-++.++.|.+|.++.+.|.+.+....+..
T Consensus 22 ~~idk~Ve~G~iTqeqAd~ik~~id~~~~~~ 52 (59)
T PF10925_consen 22 QIIDKYVEAGVITQEQADAIKKHIDQRQEYM 52 (59)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 3455678999999999999999887776643
No 258
>cd02013 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, Xsc-like subfamily, TPP-binding module; composed of proteins similar to Alcaligenes defragrans sulfoacetaldehyde acetyltransferase (Xsc). Xsc plays a key role in the degradation of taurine, catalyzing the desulfonation of 2-sulfoacetaldehyde into sulfite and acetyl phosphate. This enzyme requires TPP and divalent metal ions for activity.
Probab=23.67 E-value=2.5e+02 Score=29.66 Aligned_cols=35 Identities=20% Similarity=0.317 Sum_probs=27.6
Q ss_pred hcccccCeEEEecCCHHHHHHHHHHHHh---cCCCCcEEE
Q 001713 804 TQIQECNWQIVNVTTPANYFHVLRRQIH---REFRKPLVV 840 (1021)
Q Consensus 804 ~~~~~~Nl~Vv~pstpad~fhlLrrqi~---~~~~kPliv 840 (1021)
+-.+-.++.-+..+++++....|++++. . +.|.+|
T Consensus 137 ~lA~a~G~~~~~v~~~~el~~al~~a~~~~~~--~~p~li 174 (196)
T cd02013 137 KIAEACGAKGITVDKPEDVGPALQKAIAMMAE--GKTTVI 174 (196)
T ss_pred HHHHHCCCEEEEECCHHHHHHHHHHHHhcCCC--CCeEEE
Confidence 3344456877888999999999999986 4 778877
No 259
>KOG2733 consensus Uncharacterized membrane protein [Function unknown]
Probab=23.19 E-value=1.7e+02 Score=34.64 Aligned_cols=85 Identities=21% Similarity=0.361 Sum_probs=57.3
Q ss_pred cEEEEEeCccccCCccHHHHHHHhcCCCCCCcccEEEEEEcCCcccccCCCCCcccccHHHHHhhc---------CccEE
Q 001713 392 NMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQVAFTTDPMSGRSSQYCTDVAKAL---------DAPIF 462 (1021)
Q Consensus 392 ~v~v~~~GDgA~sGqG~v~EalnlA~LP~y~~GGvI~Vv~NNq~g~tT~~~~~rs~~~~sd~Aka~---------g~p~~ 462 (1021)
..=++++|--.|.|+=+|-|+++.-.++++ ++|+.. |+..-+.++.+-. ..+++
T Consensus 5 ~yDvVIyGASGfTG~yivee~v~~~~~~~~------------slavAG-----Rn~~KL~~vL~~~~~k~~~~ls~~~i~ 67 (423)
T KOG2733|consen 5 RYDVVIYGASGFTGKYIVEEAVSSQVFEGL------------SLAVAG-----RNEKKLQEVLEKVGEKTGTDLSSSVIL 67 (423)
T ss_pred eeeEEEEccccccceeeHHHHhhhhcccCc------------eEEEec-----CCHHHHHHHHHHHhhccCCCcccceEE
Confidence 355788999999989999999987666643 233332 2222233322211 24588
Q ss_pred EEeCCCHHHHHHHHHHHHHHHHccCCCEEEEEee-eccCCC
Q 001713 463 HVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVC-YRRFGH 502 (1021)
Q Consensus 463 ~VdG~D~eAV~~a~~~A~e~rr~~~gPvlIe~vt-YR~~GH 502 (1021)
.+|++|+..+.+-++.| -++|.+++ ||.||-
T Consensus 68 i~D~~n~~Sl~emak~~---------~vivN~vGPyR~hGE 99 (423)
T KOG2733|consen 68 IADSANEASLDEMAKQA---------RVIVNCVGPYRFHGE 99 (423)
T ss_pred EecCCCHHHHHHHHhhh---------EEEEeccccceecCc
Confidence 89999999887655544 48999998 999984
No 260
>PRK08617 acetolactate synthase; Reviewed
Probab=22.45 E-value=3.4e+02 Score=33.34 Aligned_cols=93 Identities=13% Similarity=0.022 Sum_probs=55.3
Q ss_pred cEEEEEeCccccCCccHHHHHHHhcCCCCCCcccEEEEEEcCCcccccCCCCCcccccHHHHHhhcCccEEEEeCCCHHH
Q 001713 392 NMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQVAFTTDPMSGRSSQYCTDVAKALDAPIFHVNGDDMEA 471 (1021)
Q Consensus 392 ~v~v~~~GDgA~sGqG~v~EalnlA~LP~y~~GGvI~Vv~NNq~g~tT~~~~~rs~~~~sd~Aka~g~p~~~VdG~D~eA 471 (1021)
.++++..|=|+++.-.-++||. ..+.| +|+|.-....... .....-..+..++++.+---..+| ++++.
T Consensus 69 gv~~vt~GpG~~N~l~gl~~A~-~~~~P------vlvisG~~~~~~~--~~~~~q~~d~~~l~~~~tk~~~~v--~~~~~ 137 (552)
T PRK08617 69 GVVLVTSGPGVSNLATGLVTAT-AEGDP------VVAIGGQVKRADR--LKRTHQSMDNVALFRPITKYSAEV--QDPDN 137 (552)
T ss_pred EEEEECCCCcHhHhHHHHHHHh-hcCCC------EEEEecCCccccc--CCCCccccchhhhhhhhcceEEEe--CCHHH
Confidence 4566666888877433344332 22899 8888742221100 000111123344555554445555 48888
Q ss_pred HHHHHHHHHHHHHccC-CCEEEEEe
Q 001713 472 VAHVCELAAEWRQTFH-SDVVVDLV 495 (1021)
Q Consensus 472 V~~a~~~A~e~rr~~~-gPvlIe~v 495 (1021)
+..++..|+..+..+. |||.|++=
T Consensus 138 ~~~~i~~A~~~a~~~~~GPV~l~iP 162 (552)
T PRK08617 138 LSEVLANAFRAAESGRPGAAFVSLP 162 (552)
T ss_pred HHHHHHHHHHHHccCCCCcEEEeCh
Confidence 8999999998887774 79999984
No 261
>PF08312 cwf21: cwf21 domain; InterPro: IPR013170 The cwf21 domain is found in proteins involved in mRNA splicing. Proteins containing this domain have been isolated as a subcomplex of the splicosome in Schizosaccharomyces pombe (Fission yeast) []. In yeast, this domain binds the protein Prp8p [], a large and highly conserved U5 snRNP protein which has been proposed as a protein cofactor at the spliceosomal catalytic centre []. The cwf21 domain is found in, amongst others, the small Cwc21p protein in yeast as well as in the much larger human ortholog SRm300 (serine/arginine repetitive matrix protein). ; PDB: 2E62_A.
Probab=22.39 E-value=1.8e+02 Score=24.30 Aligned_cols=32 Identities=22% Similarity=0.260 Sum_probs=25.0
Q ss_pred HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHH
Q 001713 526 LEIYQNKLLECQHVTQEDINKIQEKVNRILSEE 558 (1021)
Q Consensus 526 i~~y~~~Li~~Gi~t~ee~~~i~~~~~~~l~~a 558 (1021)
+..|++.|.++|+ +++++++-.+.+++.+.+.
T Consensus 13 ~~elrd~LEe~g~-~~eeIe~kv~~~R~~L~~~ 44 (46)
T PF08312_consen 13 CLELRDELEEQGY-SEEEIEEKVDELRKKLLEE 44 (46)
T ss_dssp HHHHHHHHHHHT---HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhc
Confidence 3568999999997 9999999999998888654
No 262
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=22.38 E-value=3.5e+02 Score=33.12 Aligned_cols=93 Identities=15% Similarity=0.020 Sum_probs=54.2
Q ss_pred cEEEEEeCccccCCccHHHHHHHhcCCCCCCcccEEEEEEcCCcccccCCCCCcccccHHHHHhhcCccEEEEeCCCHHH
Q 001713 392 NMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQVAFTTDPMSGRSSQYCTDVAKALDAPIFHVNGDDMEA 471 (1021)
Q Consensus 392 ~v~v~~~GDgA~sGqG~v~EalnlA~LP~y~~GGvI~Vv~NNq~g~tT~~~~~rs~~~~sd~Aka~g~p~~~VdG~D~eA 471 (1021)
.++++..|=|+++.-.-++++. ..+.| +|+|+-.-..... .....-..+..++++.+---...| +++++
T Consensus 63 gv~~~t~GpG~~n~l~gl~~A~-~~~~P------vl~I~G~~~~~~~--~~~~~q~~d~~~~~~~~tk~~~~i--~~~~~ 131 (539)
T TIGR02418 63 GVALVTSGPGCSNLVTGLATAN-SEGDP------VVAIGGQVKRADL--LKLTHQSMDNVALFRPITKYSAEV--QDPDA 131 (539)
T ss_pred eEEEECCCCCHhHHHHHHHHHh-hcCCC------EEEEeCCCccccc--ccCcccccchhhhhhcceeeeeec--CCHHH
Confidence 5666666777776333333322 22899 8988763221111 011111223344455433323333 58899
Q ss_pred HHHHHHHHHHHHHccC-CCEEEEEe
Q 001713 472 VAHVCELAAEWRQTFH-SDVVVDLV 495 (1021)
Q Consensus 472 V~~a~~~A~e~rr~~~-gPvlIe~v 495 (1021)
+...+..|+..+.... |||.|++=
T Consensus 132 ~~~~~~~A~~~a~~~~~GPV~l~iP 156 (539)
T TIGR02418 132 LSEVVANAFRAAESGKPGAAFVSLP 156 (539)
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEcC
Confidence 9899999998887774 79999983
No 263
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=21.90 E-value=2.9e+02 Score=34.14 Aligned_cols=91 Identities=12% Similarity=0.025 Sum_probs=47.4
Q ss_pred EEEEEeCccccCCccHHHHHHHhcCCCCCCcccEEEEEEcCCcccccCCCCCcccccHHHHHhhcCccEEEEeCCCHHHH
Q 001713 393 MAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQVAFTTDPMSGRSSQYCTDVAKALDAPIFHVNGDDMEAV 472 (1021)
Q Consensus 393 v~v~~~GDgA~sGqG~v~EalnlA~LP~y~~GGvI~Vv~NNq~g~tT~~~~~rs~~~~sd~Aka~g~p~~~VdG~D~eAV 472 (1021)
++++..|=|+++.-.-++|+. ..++| +|+|.-+-...... ....-..+..++++.+-.-...|+ +++.+
T Consensus 69 v~~~t~GpG~~n~~~gi~~A~-~~~~P------vl~i~G~~~~~~~~--~~~~Q~~d~~~l~~~itk~~~~v~--~~~~~ 137 (574)
T PRK09124 69 VCAGSCGPGNLHLINGLFDCH-RNHVP------VLAIAAHIPSSEIG--SGYFQETHPQELFRECSHYCELVS--NPEQL 137 (574)
T ss_pred EEEECCCCCHHHHHHHHHHHh-hcCCC------EEEEecCCccccCC--CCCccccChhhhcccceeeeEEeC--CHHHH
Confidence 344445666665333333332 23999 88887532211100 000111123334443322233343 67777
Q ss_pred HHHHHHHHHHHHccCCCEEEEE
Q 001713 473 AHVCELAAEWRQTFHSDVVVDL 494 (1021)
Q Consensus 473 ~~a~~~A~e~rr~~~gPvlIe~ 494 (1021)
..+++.|+..+....|||.|++
T Consensus 138 ~~~i~~A~~~A~~~~gPV~l~i 159 (574)
T PRK09124 138 PRVLAIAMRKAILNRGVAVVVL 159 (574)
T ss_pred HHHHHHHHHHHhcCCCCEEEEe
Confidence 7777777777777779999997
No 264
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=21.86 E-value=3.4e+02 Score=33.50 Aligned_cols=93 Identities=13% Similarity=0.118 Sum_probs=53.7
Q ss_pred cEEEEEeCccccCCccHHHHHHHhcCCCCCCcccEEEEEEcCCcccccCCCCCcccccHHHHHhhcCccEEEEeCCCHHH
Q 001713 392 NMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQVAFTTDPMSGRSSQYCTDVAKALDAPIFHVNGDDMEA 471 (1021)
Q Consensus 392 ~v~v~~~GDgA~sGqG~v~EalnlA~LP~y~~GGvI~Vv~NNq~g~tT~~~~~rs~~~~sd~Aka~g~p~~~VdG~D~eA 471 (1021)
.++++..|=|+++.=.-++||. ..+.| +|+|.-.-. ............+..++++.+---.++| .+++.
T Consensus 72 ~v~~~t~GpG~~n~~~gl~~A~-~~~~P------vl~i~G~~~--~~~~~~~~~q~~d~~~~~~~itk~s~~v--~~~~~ 140 (561)
T PRK06048 72 GVCVATSGPGATNLVTGIATAY-MDSVP------IVALTGQVP--RSMIGNDAFQEADITGITMPITKHNYLV--QDAKD 140 (561)
T ss_pred eEEEECCCCcHHHHHHHHHHHh-hcCCC------EEEEeccCC--ccccCCCCccccchhhhccCcceEEEEe--CCHHH
Confidence 5666666777776433333333 12999 888864211 1110111111123444454443334445 47888
Q ss_pred HHHHHHHHHHHHHcc-CCCEEEEEe
Q 001713 472 VAHVCELAAEWRQTF-HSDVVVDLV 495 (1021)
Q Consensus 472 V~~a~~~A~e~rr~~-~gPvlIe~v 495 (1021)
+..++..|+..++.+ .|||.|++=
T Consensus 141 i~~~i~~A~~~A~~~~~GPV~l~iP 165 (561)
T PRK06048 141 LPRIIKEAFHIASTGRPGPVLIDLP 165 (561)
T ss_pred HHHHHHHHHHHHhcCCCCeEEEecC
Confidence 889999999888877 489999993
Done!