Query 001713
Match_columns 1021
No_of_seqs 380 out of 3290
Neff 5.7
Searched_HMMs 29240
Date Tue Mar 26 16:58:30 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001713.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1009-1012//hhsearch_pdb/001713hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xt6_A 2-oxoglutarate decarbox 1.0 1 1 1708.6 76.0 886 66-1013 202-1113(1113)
2 2jgd_A 2-oxoglutarate dehydrog 1.0 1 1 1701.3 74.7 896 63-1014 11-932 (933)
3 2yic_A 2-oxoglutarate decarbox 1.0 1 1 1669.8 72.4 842 115-1013 5-868 (868)
4 1qs0_A 2-oxoisovalerate dehydr 1.0 1 1 504.8 28.1 335 200-580 46-396 (407)
5 2bfd_A 2-oxoisovalerate dehydr 1.0 1 1 504.4 26.6 361 203-617 29-397 (400)
6 2ozl_A PDHE1-A type I, pyruvat 1.0 1 1 488.3 29.2 311 229-581 29-348 (365)
7 1w85_A Pyruvate dehydrogenase 1.0 1 1 482.8 26.9 325 202-580 17-351 (368)
8 2o1s_A 1-deoxy-D-xylulose-5-ph 1.0 1 1 461.3 33.3 544 229-1012 21-616 (621)
9 1umd_A E1-alpha, 2-OXO acid de 1.0 1 1 457.0 31.0 333 203-580 11-352 (367)
10 3mos_A Transketolase, TK; thia 1.0 1 1 448.2 33.8 479 362-1011 119-614 (616)
No 1
>2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A {Mycobacterium smegmatis}
Probab=1.00 E-value=1 Score=1708.56 Aligned_cols=886 Identities=42% Similarity=0.709 Sum_probs=796.8
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCC----CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 66799989999999999519999598899999600388899999----98155798989999999998658222224999
Q 001713 66 FLDGTSSVYLEELQRSWEADPNSVDESWQNFFRNFVGQAATSPG----ISGQTIQESMRLLLLVRAYQVNGHMKAKLDPL 141 (1021)
Q Consensus 66 ~l~~~n~~yie~lY~~~~~dP~SV~~sW~~~F~~~~~~~~~~~~----~~~~~~~~~~~~~~li~ayr~~GH~~A~ldPL 141 (1021)
.+.|..++-.-....+++.||. +|+.||+++..+. .++. .....+.++.++++||++||.|||+.|+||||
T Consensus 202 viDGa~aa~FL~~lk~~Le~p~----~w~~~f~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~li~~yr~~gh~~a~~dpl 276 (1113)
T 2xt6_A 202 IIQGAESGDFLRTIHQLLLDDD----FFDEIFRELGIPY-EPVRWRTDNPDSIEDKNARVIELIAAYRNRGHLMADIDPL 276 (1113)
T ss_dssp TCCHHHHHHHHHHHHHHTTCHH----HHHHHHHHHTCCS-CCCCCCCCCCSCHHHHHHHHHHHHHHHHHHGGGSCCCCTT
T ss_pred EECHHHHHHHHHHHHHHHHCCH----HHHHHHHHCCCCC-CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 0055889999999999985928----7899987424777-8633234676235889999999999999819610133888
Q ss_pred CCCCC---CCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH
Q ss_conf 99878---999999965579992244541312853333444589997689999999998722752212323589989999
Q 001713 142 GLEER---EIPDDLDPAFYGFTEADLDREFFLGVWSMAGFLSENRPVQTLRSILTRLEQAYCGSIGFEYMHISDREKCNW 218 (1021)
Q Consensus 142 ~~~~~---~~~~~l~~~~~g~~~~dl~~~~~~~~~~~~~~~~~~~~~~tl~ei~~~l~~~Ycg~ig~E~~hi~~~e~~~W 218 (1021)
++ .+ ..+++|++.+|||+++|||++|.+| ++. +...+||+||+++|+++|||+||+|||||.|+++|.|
T Consensus 277 ~~-~~~~~~~~~~l~~~~~g~~~~d~~~~~~~~-----~~~--~~~~~~l~~~~~~l~~~yc~~ig~e~~~i~~~~~~~w 348 (1113)
T 2xt6_A 277 RL-DNTRFRSHPDLDVNSHGLTLWDLDREFKVD-----GFA--GVQRKKLRDILSVLRDAYCRHVGVEYTHILEPEQQRW 348 (1113)
T ss_dssp CC-CGGGGSCCTTTCSGGGTCCGGGTTSEEEEC-----STT--SSEEEEHHHHHHHHHHHHSSSEEEECTTCSCHHHHHH
T ss_pred CC-CCCCCCCCCCCCHHHCCCCHHHHCCCCCCC-----CCC--CCCCCCHHHHHHHHHHHCCCCCCCCEECCCCHHHHHH
T ss_conf 87-767788888768877499857726702368-----656--7566779999999997325887763333699788689
Q ss_pred HHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEECCCCCC
Q ss_conf 99961899999999989999999999997899999999740751444785324889999999976079873998189631
Q 001713 219 LRDKIETPTPMQYNRQRREVILDRLVWSTQFENFLATKWTTAKRFGLEGGETLIPGMKEMFDRAADLGVESIVIGMPHRG 298 (1021)
Q Consensus 219 l~~~~E~~~~~~~s~e~~~~il~~m~~ar~fE~~l~~~~~~~Krfg~eG~Ea~i~gl~~~l~~~~~~gv~D~vigm~HRg 298 (1021)
+++++|+.. +.+++|+++++|++|+++|.||+++.++|+++||||++|||+++||++.+++.++.+|++|+++||+|||
T Consensus 349 ~~~~~e~~~-~~~s~e~~~~~y~~m~~~r~fE~~l~~~~~~~k~~g~~GqEa~~~g~~~~l~~~~~l~~~D~v~gm~hRg 427 (1113)
T 2xt6_A 349 IQERVETKH-DKPTVAEQKYILSKLNAAEAFETFLQTKYVGQKRFSLEGAETVIPMMDAVIDQCAEHGLDEVVIAMPHRG 427 (1113)
T ss_dssp HHHHHHSCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHCSSCGGGCCTTCTTHHHHHHHHHHHHHHTTCSEEEEECCSTT
T ss_pred HHHHHHCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCC
T ss_conf 999860677-7899999999999999999999999999744880567870789999999999765179877997346432
Q ss_pred HHHHHHHHCCCCHHHHHHHHCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCC-CCCCEEEEECCCCCCCCCCCCEEEHH
Q ss_conf 799999840999999999820999999-8777545788753444334789899-98402442203568766665523137
Q 001713 299 RLNVLGNVVRKPLRQIFSEFSGGTRPV-DEVGLYTGTGDVKYHLGTSYDRPTR-GGKRIHLSLVANPSHLEAVDPVVIGK 376 (1021)
Q Consensus 299 rln~La~v~g~p~~~if~Ef~G~~~~~-~~G~~~ggsgDvkyHlg~~~~~~~~-~g~~i~l~l~~npShLg~~~PvA~G~ 376 (1021)
|+|+|+|++|+|+.+||+||+|+.+++ +. |+|||+||+|++....+. +++.+++++++||||||+++|+|+|+
T Consensus 428 ~~~~La~~~G~~~~~i~ae~~G~~~g~~~~-----g~gdv~~Hlg~~~~~~~~~g~~~v~l~l~~n~s~Lg~~~p~A~G~ 502 (1113)
T 2xt6_A 428 RLNVLANIVGKPYSQIFSEFEGNLNPSQAH-----GSGDVKYHLGATGTYIQMFGDNDIEVSLTANPSHLEAVDPVLEGL 502 (1113)
T ss_dssp HHHHHHHTTCCCHHHHSTTC------------------CGGGTCCEEEEEECSSSSCEEEEEECCCCSSTTTTHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHCCCCCCCCCC-----CCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCHHHHH
T ss_conf 677899983998999999963988887667-----999855447755434446787604664067776534541399999
Q ss_pred HHHHHHHCCCCCC-----CCCEEEEEECCCCCCCCCHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCHH
Q ss_conf 7774873099889-----87579999575334774279999982399999855289999919813334898876652688
Q 001713 377 TRAKQYYSNDMDR-----TKNMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQVAFTTDPMSGRSSQYCT 451 (1021)
Q Consensus 377 A~A~q~~~~d~~~-----~~~v~i~~~GDgA~sGqG~v~EalnlA~LP~y~~GGvI~IV~NNqig~tT~~~~~rs~~~~s 451 (1021)
|+|.|+++.+.++ .+.+++|+||||+|++||+|||+||+|.+.+|.|||+||||+||||||||++.+++++.|++
T Consensus 503 A~A~k~~~~~~~~~~~~~~~~~~v~~~GDGa~~~eG~~~Ealn~A~~~~lp~g~vi~iv~NN~~gist~~~~~~s~~~~~ 582 (1113)
T 2xt6_A 503 VRAKQDLLDTGEEGSDNRFSVVPLMLHGDAAFAGQGVVAETLNLALLRGYRTGGTIHIVVNNQIGFTTAPTDSRSSEYCT 582 (1113)
T ss_dssp HHHHHHHTTBSTTSSBSCCCEEEEEEEEHHHHHHCTHHHHHHTTTTCTTTCCSCCEEEEEECSCBTTBCHHHHCSSSSTT
T ss_pred HHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCHH
T ss_conf 99998754466765546678179999778545466399999999863298988769999808805545711241666999
Q ss_pred HHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHH
Q ss_conf 88814495499991899999999999999998805997999972000689878999998898989999909999999999
Q 001713 452 DVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYRRFGHNEIDEPSFTQPKMYKIIRSHPSSLEIYQN 531 (1021)
Q Consensus 452 d~aka~g~p~~~VdG~D~~aV~~a~~~A~e~rr~~~~PvlIe~~tYR~~GHne~D~p~ytqp~~y~~i~~~~dpi~~y~~ 531 (1021)
++|++||+|+++|||+|++||++|++.|++|||++++|++||++|||++|||++|+|+||+|.||+.|++++||+.+|++
T Consensus 583 ~~a~a~G~p~~~VdG~D~~av~~a~~~A~~~~r~~~~PvlIe~~tyR~~GHs~~D~p~~~~~~~~~~~~~~~dpi~~~~~ 662 (1113)
T 2xt6_A 583 DVAKMIGAPIFHVNGDDPEACAWVARLAVDFRQAFKKDVVIDMLCYRRRGHNEGDDPSMTQPYMYDVIDTKRGSRKAYTE 662 (1113)
T ss_dssp GGGGGGTCCEEEEETTCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCSCSSTTCCGGGTCHHHHHHHTTCCCHHHHHHH
T ss_pred HHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHH
T ss_conf 99986698389981899999999999999999706997899999672688187776655795999999866999999999
Q ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCHHCCC-CCCCH--HHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHC
Q ss_conf 999836899999999999999999999998010499-95211--122005999930001258999876899999876603
Q 001713 532 KLLECQHVTQEDINKIQEKVNRILSEEFVASKDYVP-NRRDW--LSAYWSGFKSPEQLSRIRNTGVKPEILKNVGKAITT 608 (1021)
Q Consensus 532 ~Li~~Gi~t~ee~~~i~~~~~~~l~~a~~~A~~~~p-~~~~~--~~~~~~~~~~~~~~~~~~~t~v~~~~l~~i~~~~~~ 608 (1021)
+|+++|++|++++++++++++++++++++.|+++.| .+.+| +.+.|.+ ....+|+++.+.|+.+++++++
T Consensus 663 ~L~~~G~~t~ee~~~i~~e~~~~v~~a~~~a~~~~~~~~~~~~~~~~~~~~-------~~~~~t~~~~~~l~~~~~~~~~ 735 (1113)
T 2xt6_A 663 ALIGRGDISMKEAEDALRDYQGQLERVFNEVRELEKHEIEPSESVEADQQI-------PSKLATAVDKAMLQRIGDAHLA 735 (1113)
T ss_dssp HHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----------------------CCCCCCHHHHHHHHHHTTC
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC-------CCCCCCCCCHHHHHHHHHHHCC
T ss_conf 999769999999999999999999999999873288885552000344455-------6677774579999999986256
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCEECCCCCCCEECCCC
Q ss_conf 89998763104999999999862398768899999999998834981999733479852233112000277674111478
Q 001713 609 LPENFKPHRGVKKVYELRAQMIETGEGIDWALGEALAFATLLVEGNHVRLSGQDVERGTFSHRHSVLHDQETGEQYCPLD 688 (1021)
Q Consensus 609 ~P~~f~~h~~l~~~~~~R~~~~~~~~~idw~~ae~lA~~~ll~~~~~Vrl~GqDv~rGtF~~RHav~~dq~t~~~y~pL~ 688 (1021)
+|++|++|+++.++++.|.+|+++ +.|||+++|+|||++||.+|++||++||||+||||+|||||||||+++..|.||+
T Consensus 736 ~p~~~~~~~~v~~~~~~r~~m~~~-~~i~~a~~e~la~~~ll~~~~~V~l~GeDv~rgtfs~rh~v~~d~~~g~~~~~l~ 814 (1113)
T 2xt6_A 736 LPEGFTVHPRVRPVLEKRREMAYE-GRIDWAFAELLALGSLIAEGKLVRLSGQDTQRGTFTQRHAVIVDRKTGEEFTPLQ 814 (1113)
T ss_dssp CCTTCCCCTTTHHHHHHHHHHHHH-CCBCHHHHHHHHHHHHHHTTCEEEEEETTTTTCTTSCCCSSEECTTTCCEECGGG
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHCCHHEECCCCCCEECCHH
T ss_conf 984455216678888779987542-0344889999989999833998899836678753100000000046786651301
Q ss_pred CC------CCCCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEE
Q ss_conf 86------335677662875576346789889873116799730371143330585489999999964644405866629
Q 001713 689 HV------MMNQDAEMFTVSNSSLSEFGVLGFELGYSMENPNSLVMWEAQFGDFANGAQVIFDQFVNSGESKWLRQSGLV 762 (1021)
Q Consensus 689 ~l------~~~~~~g~~rV~nspLSE~~vlGfe~G~s~~g~~~lviwEaqFgDF~n~Aq~iiDqfi~~~~~kw~~~~~lV 762 (1021)
+| . ++++++||+||||||++++|||+|||+.|+++++|||+||+||+|+||+++|||++++++||++++|||
T Consensus 815 ~l~~~~~~~--~~~~p~rv~ds~IsE~~~vg~a~G~A~~G~~~~~i~Eaqf~dF~~~aQ~~~DQ~i~~~~~k~~~~~~vv 892 (1113)
T 2xt6_A 815 LLATNPDGT--PTGGKFLVYNSALSEFAAVGFEYGYSVGNPDAMVLWEAQFGDFVNGAQSIIDEFISSGEAKWGQLSDVV 892 (1113)
T ss_dssp GGGBCTTSC--BCSCEEEEEECCSCSHHHHHHHHHHHHHCTTSEEEEECSSGGGGGGGHHHHHHTTTTHHHHHCCCCCCE
T ss_pred CCCCCCCCC--HHCCCCEEEECCCCHHHHHHHHHHHHHCCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCEE
T ss_conf 002134330--221985799788777889999999986399872289997778874157889999999999847999989
Q ss_pred EEECCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCEEEEE
Q ss_conf 99195579999677686266764104899986457883011002555809996399789999999998607998199992
Q 001713 763 VMLPHGYDGQGPEHSSARLERFLQMSDDNPYVIPEMDSTLRTQIQECNWQIVNVTTPANYFHVLRRQIHREFRKPLVVMS 842 (1021)
Q Consensus 763 ~~lPhG~~G~GpeHSs~r~Er~Lql~~e~~~~~~~~pg~~~~~~~~~Nl~V~~pstpad~fhlLrrqi~~~~~~Pliv~~ 842 (1021)
+++||||+|+||+|||+|+|+|||||+. | ||+|++||||+|+|||||+|+++++++|++||+
T Consensus 893 ~~lp~G~~G~G~~Hs~~~~E~~l~l~~~--------p----------nm~V~~Ps~~~~~~~lLr~a~~~~~~~Pvii~~ 954 (1113)
T 2xt6_A 893 LLLPHGHEGQGPDHTSGRIERFLQLWAE--------G----------SMTIAMPSTPANYFHLLRRHGKDGIQRPLIVFT 954 (1113)
T ss_dssp EEEECCCSSSCTTSSCCCHHHHHHHCCT--------T----------SCEEECCSSHHHHHHHHHHHHHSSCCCCEEEEE
T ss_pred EEECCCCCCCCHHHHCCCHHHHHHCCCC--------C----------CCEEEECCCHHHHHHHHHHHHHCCCCCCEEEEE
T ss_conf 9967878888820115358889852799--------9----------948996199999999999987426899789996
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCEE--EEEEECHHHHHHHHHHHHCCCCCEEE
Q ss_conf 0545488666688666654579998888898605720486655557799809--99950546999999999739992999
Q 001713 843 PKNLLRHKECKSNLSEFDDVQGHPGFDKQGTRFKRLIKDQNEHSDLEEGIRR--LILCSGKVYYELYEERKKHSASDIAI 920 (1021)
Q Consensus 843 pK~Llr~~~~~s~~~e~~~~~~~~~~~~~~~~f~~vi~~~~~~~~~~~g~~~--~Iv~~G~~~~~l~~a~~~~~~~~v~i 920 (1021)
||+|||++.++++++++.. +.|+++|++...+...++|.|+ +|||||++|+++.+++++.+.++++|
T Consensus 955 pk~L~R~~~~~~~~~~~~~-----------~~f~~~ig~~~~~~~l~~g~dv~r~iv~~G~~~~~l~aa~~~~g~i~v~V 1023 (1113)
T 2xt6_A 955 PKSMLRNKAAVSDIRDFTE-----------SKFRSVLEEPMYTDGEGDRNKVTRLLLTSGKIYYELAARKAKENREDVAI 1023 (1113)
T ss_dssp CSGGGSCSSSCBCHHHHHS-----------CCCCSEECCHHHHTSCCCSTTCCEEEEECSTHHHHHHHHHHHHTCTTEEE
T ss_pred CHHHHCCCCCCCCCCCCCC-----------CCCCCCCCCCEEECCCCCCCCCCEEEEEECHHHHHHHHHHHHCCCCCEEE
T ss_conf 6687078877886101588-----------87420698551114532734207899998779999999999679987799
Q ss_pred EEECCCCCCCHHHHHHHHHCCCCC-EEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCHHH
Q ss_conf 980444799989999999729996-0899833886564175299999998775104999967998279996799550898
Q 001713 921 CRVEQLCPFPYDLVQRELKRYPNA-EVVWSQEEPMNMGAYTYIAPRLCTAMKAVDRGTMEDIKYVGRAPSAASATGFYQV 999 (1021)
Q Consensus 921 i~le~L~Pfp~~~i~~~v~k~~~~-~~vwvqEe~~n~G~~~~i~~~i~~~~~~l~~~~~~~~~~vgr~~~~~pa~g~~~~ 999 (1021)
||+|||+|||+++|.++++||+++ ++|||||+++|||+|++|++++.+.+..|+ .+++|+||+++++||+|+...
T Consensus 1024 Idl~~l~Pld~~~i~~~~~k~~~~~~vv~veE~~~~gG~gs~v~~~l~e~~~~l~----~~~~~vg~~d~~~p~~g~~~~ 1099 (1113)
T 2xt6_A 1024 VRIEQLAPLPRRRLAETLDRYPNVKEKFWVQEEPANQGAWPSFGLTLPEILPDHF----TGLKRISRRAMSAPSSGSSKV 1099 (1113)
T ss_dssp EEESEEESCCHHHHHHHHTTCTTCCEEEEEEEEETTSTTHHHHHHHHHHHSHHHH----TTCEEEEECCCSSSSCSCHHH
T ss_pred EEEEEECCCCHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCC----CCEEEECCCCCCCCCCCCHHH
T ss_conf 9860326999999999998579986399996189777859999999999744328----986897368767788888888
Q ss_pred HHHHHHHHHHHHCC
Q ss_conf 98999999999409
Q 001713 1000 HVKEQSELMQKAIQ 1013 (1021)
Q Consensus 1000 h~~e~~~i~~~a~~ 1013 (1021)
|.+||++|+++||+
T Consensus 1100 h~~~~~~~~~~a~~ 1113 (1113)
T 2xt6_A 1100 HAVEQQEILDTAFG 1113 (1113)
T ss_dssp HHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHC
T ss_conf 74799999999749
No 2
>2jgd_A 2-oxoglutarate dehydrogenase E1 component; flavoprotein, oxidoreductase, thiamine diphosphate, thiamine pyrophosphate, adenosine monophosphate; HET: AMP; 2.6A {Escherichia coli} PDB: 2jgd_B*
Probab=1.00 E-value=1 Score=1701.30 Aligned_cols=896 Identities=44% Similarity=0.764 Sum_probs=811.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCC--C--C-CCCC----------CC--------CHHHHHHHH
Q ss_conf 8776679998999999999951999959889999960038--8--8-9999----------99--------815579898
Q 001713 63 TDNFLDGTSSVYLEELQRSWEADPNSVDESWQNFFRNFVG--Q--A-ATSP----------GI--------SGQTIQESM 119 (1021)
Q Consensus 63 ~~~~l~~~n~~yie~lY~~~~~dP~SV~~sW~~~F~~~~~--~--~-~~~~----------~~--------~~~~~~~~~ 119 (1021)
+++||+|.|+.|||+||++|++||+|||+||+.||+++.. . . ...+ .. ......++.
T Consensus 11 ~~~~~~~~~~~~~~~~y~~~~~~p~sv~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (933)
T 2jgd_A 11 DSSYLSGANQSWIEQLYEDFLTDPDSVDANWRSTFQQLPGTGVKPDQFHSQTREYFRRLAKDASRYSSTISDPDTNVKQV 90 (933)
T ss_dssp -------------------------------------------------------------------------CHHHHHH
T ss_pred HHCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHH
T ss_conf 41434544599999999997318545679999998403446885323456313343001445555544567605688999
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 99999999986582222249999987899999996557999224454131285333344458999768999999999872
Q 001713 120 RLLLLVRAYQVNGHMKAKLDPLGLEEREIPDDLDPAFYGFTEADLDREFFLGVWSMAGFLSENRPVQTLRSILTRLEQAY 199 (1021)
Q Consensus 120 ~~~~li~ayr~~GH~~A~ldPL~~~~~~~~~~l~~~~~g~~~~dl~~~~~~~~~~~~~~~~~~~~~~tl~ei~~~l~~~Y 199 (1021)
++++||++||.|||+.|+||||++..+..+++|++.+|||+++|||++|.++. +.. +...+||+||+++|+++|
T Consensus 91 ~~~~li~~yr~~gh~~a~~dpl~~~~~~~~~~l~~~~~g~~~~d~~~~~~~~~-----~~~-~~~~~~l~~~~~~l~~~y 164 (933)
T 2jgd_A 91 KVLQLINAYRFRGHQHANLDPLGLWQQDKVADLDPSFHDLTEADFQETFNVGS-----FAS-GKETMKLGELLEALKQTY 164 (933)
T ss_dssp HHHHHHHHHHHHGGGGSCCCSSSCCCCC---CCSSGGGGCCC-CTTSEEECTT-----CC----CEEEHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHCCCCHHHCCCEECCCC-----CCC-CCCCCCHHHHHHHHHHHC
T ss_conf 99999999998286101469888777888887798675995332256032686-----456-867676999999999733
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 27522123235899899999996189999999998999999999999789999999974075144478532488999999
Q 001713 200 CGSIGFEYMHISDREKCNWLRDKIETPTPMQYNRQRREVILDRLVWSTQFENFLATKWTTAKRFGLEGGETLIPGMKEMF 279 (1021)
Q Consensus 200 cg~ig~E~~hi~~~e~~~Wl~~~~E~~~~~~~s~e~~~~il~~m~~ar~fE~~l~~~~~~~Krfg~eG~Ea~i~gl~~~l 279 (1021)
||+||+|||||.|++++.|+++++|+. .+.+++|+++++|++|+++|.||+++.++|+++||||++|||+++||+++++
T Consensus 165 c~~ig~e~~~i~~~~~~~w~~~~~e~~-~~~~s~e~~~~~y~~m~~~r~fE~~l~~~~~~gkrf~~~G~Ea~i~g~~~~~ 243 (933)
T 2jgd_A 165 CGPIGAEYMHITSTEEKRWIQQRIESG-RATFNSEEKKRFLSELTAAEGLERYLGAKFPGAKRFSLEGGDALIPMLKEMI 243 (933)
T ss_dssp HSSEEEECSSCCCHHHHHHHHHHHCC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC--CCCCTTCTTHHHHHHHHH
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH
T ss_conf 688762036307989868998876416-7899999999999999999999999999874487036788118999999999
Q ss_pred HHHHHCCCCCEEECCCCCCHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE
Q ss_conf 99760798739981896317999998409999999998209999998777545788753444334789899984024422
Q 001713 280 DRAADLGVESIVIGMPHRGRLNVLGNVVRKPLRQIFSEFSGGTRPVDEVGLYTGTGDVKYHLGTSYDRPTRGGKRIHLSL 359 (1021)
Q Consensus 280 ~~~~~~gv~D~vigm~HRgrln~La~v~g~p~~~if~Ef~G~~~~~~~G~~~ggsgDvkyHlg~~~~~~~~~g~~i~l~l 359 (1021)
+.++..|++|+++||+||||+|+|+|++|+|+.+||+||+|+.++.+ |+||||||+|++....+. |..+|+++
T Consensus 244 ~~a~~~g~~D~v~g~~hRg~~~~Lan~~G~~~~~i~~e~~G~~~g~~------g~gdv~~Hlg~~~~~~~~-gg~~~l~l 316 (933)
T 2jgd_A 244 RHAGNSGTREVVLGMAHRGRLNVLVNVLGKKPQDLFDEFAGKHKEHL------GTGDVKYHMGFSSDFQTD-GGLVHLAL 316 (933)
T ss_dssp HHHHTTTCCEEEEECCSTTHHHHHHHTTCCCHHHHHHHHHTCC--CC------SCCCCGGGCCEEEEEEET-TEEEEEEE
T ss_pred HHHHHCCCCCEEECCCCCCHHHHHHHHHCCCHHHHHHHHCCCCCCCC------CCCCCCCCCCCCCCCCCC-CCCEEEEE
T ss_conf 98864799878931777677899998729999999999659998888------889855357754334457-87137863
Q ss_pred CCCCCCCCCCCCEEEHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCC
Q ss_conf 03568766665523137777487309988987579999575334774279999982399999855289999919813334
Q 001713 360 VANPSHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQVAFTT 439 (1021)
Q Consensus 360 ~~npShLg~~~PvA~G~A~A~q~~~~d~~~~~~v~i~~~GDgA~sGqG~v~EalnlA~LP~y~~GGvI~IV~NNqig~tT 439 (1021)
++||||+|+++|+|+|+|+|.++++.+.++.+.++||+|||||+++||++||+||+|.+.+|.|||+||||+||||||||
T Consensus 317 ~~~~shlg~~~p~A~G~A~A~~~~~~~~~~~~~~vv~v~GDGa~a~qG~~~Ealn~A~~~~lp~gg~I~vv~nN~~~ist 396 (933)
T 2jgd_A 317 AFNPSHLEIVSPVVIGSVRARLDRLDEPSSNKVLPITIHGDAAVTGQGVVQETLNMSKARGYEVGGTVRIVINNQVGFTT 396 (933)
T ss_dssp CCCCSSTTCHHHHHHHHHHHHHTTSSSCCGGGEEEEEEEEHHHHHHCTHHHHHHHHTTSTTTCCSCCEEEEEECC-----
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCC
T ss_conf 45676200213799999999986365567887189999777556568889999998514289977669999968826667
Q ss_pred -CCCCCCCCCCHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCCCHHHHHH
Q ss_conf -8988766526888881449549999189999999999999999880599799997200068987899999889898999
Q 001713 440 -DPMSGRSSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYRRFGHNEIDEPSFTQPKMYKI 518 (1021)
Q Consensus 440 -~~~~~rs~~~~sd~aka~g~p~~~VdG~D~~aV~~a~~~A~e~rr~~~~PvlIe~~tYR~~GHne~D~p~ytqp~~y~~ 518 (1021)
++.+++++.|+++++++||+|++||||+|+++|+++++.|++|+|++++|++||++|||++|||++|+|+||+|+||+.
T Consensus 397 ~~~~~~~~~~~~~~~a~a~g~p~~~VdG~D~~av~~a~~~A~e~~r~~~~P~lIe~~tyR~~GH~~~D~~~yr~~~e~~~ 476 (933)
T 2jgd_A 397 SNPLDARSTPYCTDIGKMVQAPIFHVNADDPEAVAFVTRLALDFRNTFKRDVFIDLVCYRRHGHNEADEPSATQPLMYQK 476 (933)
T ss_dssp ----------CGGGGGGTTTCCEEEEETTCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCC-----------CCTTHHH
T ss_pred CCHHHCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCHHHCCHHHHHH
T ss_conf 88776016430999999769978997899999999999999999985599989999600015748542121189999999
Q ss_pred HHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCHHCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 99099999999999998368999999999999999999999980104999521112200599993000125899987689
Q 001713 519 IRSHPSSLEIYQNKLLECQHVTQEDINKIQEKVNRILSEEFVASKDYVPNRRDWLSAYWSGFKSPEQLSRIRNTGVKPEI 598 (1021)
Q Consensus 519 i~~~~dpi~~y~~~Li~~Gi~t~ee~~~i~~~~~~~l~~a~~~A~~~~p~~~~~~~~~~~~~~~~~~~~~~~~t~v~~~~ 598 (1021)
|++++||+.+|+++|+++|++|++++++++++++++++++++.|++..|.+.++ ..|.++... ......+|+++.+.
T Consensus 477 ~~~~~dPi~~~~~~Li~~Gv~t~~~~~~i~~~~~~~v~~a~~~A~~~~p~~~~~--~~~~~~~~~-~~~~~~~tg~~~~~ 553 (933)
T 2jgd_A 477 IKKHPTPRKIYADKLEQEKVATLEDATEMVNLYRDALDAGDCVVAEWRPMNMHS--FTWSPYLNH-EWDEEYPNKVEMKR 553 (933)
T ss_dssp HHTSCCHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHTSCCCTTEECCCGGG--CTTGGGSSC-CTTCCCCCCCCHHH
T ss_pred HHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCH--HHCCCCCCC-CCCCCCCCCCCHHH
T ss_conf 871699899999999976999999999999999999999999997348887653--432465532-34567777777899
Q ss_pred HHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCEECCC
Q ss_conf 99998766038999876310499999999986239876889999999999883498199973347985223311200027
Q 001713 599 LKNVGKAITTLPENFKPHRGVKKVYELRAQMIETGEGIDWALGEALAFATLLVEGNHVRLSGQDVERGTFSHRHSVLHDQ 678 (1021)
Q Consensus 599 l~~i~~~~~~~P~~f~~h~~l~~~~~~R~~~~~~~~~idw~~ae~lA~~~ll~~~~~Vrl~GqDv~rGtF~~RHav~~dq 678 (1021)
|+.+++++..+|++|++|+++.|+++.|.+|+++++.+||+++|++||++||.+|++|+++|||+++|||+|||||||||
T Consensus 554 l~~i~~~~~~~p~~~~~~~~v~~~~~~R~~~~~~~~~~dw~~~e~~al~~l~~~~~~V~~~g~Dv~~gTfs~rh~v~~d~ 633 (933)
T 2jgd_A 554 LQELAKRISTVPEAVEMQSRVAKIYGDRQAMAAGEKLFDWGGAENLAYATLVDEGIPVRLSGEDSGRGTFFHRHAVIHNQ 633 (933)
T ss_dssp HHHHHHHTTCCCTTSCCCHHHHHHHHHHHHHHTTSSCBCHHHHHHHHHHHHHTTTCCEEEEETTTTTCTTSCCCCSEECS
T ss_pred HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHCCCC
T ss_conf 99987642579987762578999998898865036788789999999999972499999978866775122210000125
Q ss_pred CCCCEECCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 76741114788633567766287557634678988987311679973037114333058548999999996464440586
Q 001713 679 ETGEQYCPLDHVMMNQDAEMFTVSNSSLSEFGVLGFELGYSMENPNSLVMWEAQFGDFANGAQVIFDQFVNSGESKWLRQ 758 (1021)
Q Consensus 679 ~t~~~y~pL~~l~~~~~~g~~rV~nspLSE~~vlGfe~G~s~~g~~~lviwEaqFgDF~n~Aq~iiDqfi~~~~~kw~~~ 758 (1021)
+|+..|+||++|. ++||++||+||||||++++|||+|||+.|+++|+|||+||+||+|+||.++|||+++++.||+++
T Consensus 634 ~~g~~~~~l~~l~--~~~gp~rv~ds~IaE~~~vg~a~G~A~~G~~~lpv~e~qf~dF~~~AQra~DQii~~~~ak~~~~ 711 (933)
T 2jgd_A 634 SNGSTYTPLQHIH--NGQGAFRVWDSVLSEEAVLAFEYGYATAEPRTLTIWEAQFGDFANGAQVVIDQFISSGEQKWGRM 711 (933)
T ss_dssp SSSCEECGGGCSC--TTCCCEEEECCCSCHHHHHHHHHHHHHHCTTSEEEEEC-CGGGGGGGHHHHHHTTTTHHHHHCCC
T ss_pred CCCCEEECHHHHH--HHCCCCEEEECCCCHHHHHHHHHHHHHCCCCCCCEEEEEEHHHHCCCHHHHHHHHHHHHHHHCCC
T ss_conf 6785430368888--87099759977747899999999998569988887999775665642889999999999987168
Q ss_pred CCEEEEECCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCE
Q ss_conf 66299919557999967768626676410489998645788301100255580999639978999999999860799819
Q 001713 759 SGLVVMLPHGYDGQGPEHSSARLERFLQMSDDNPYVIPEMDSTLRTQIQECNWQIVNVTTPANYFHVLRRQIHREFRKPL 838 (1021)
Q Consensus 759 ~~lV~~lPhG~~G~GpeHSs~r~Er~Lql~~e~~~~~~~~pg~~~~~~~~~Nl~V~~pstpad~fhlLrrqi~~~~~~Pl 838 (1021)
+|+|+++||||+|+||+|||+|+|+|||+|+++ ||+|++||||+|+|||||+|+.+++++|+
T Consensus 712 ~~vv~~l~~G~~g~G~~Hss~~~E~~l~~~~~p------------------nm~V~~Pst~~e~~~lLr~a~~~~~~~Pv 773 (933)
T 2jgd_A 712 CGLVMLLPHGYEGQGPEHSSARLERYLQLCAEQ------------------NMQVCVPSTPAQVYHMLRRQALRGMRRPL 773 (933)
T ss_dssp CCCEEEEECCCSSSCTTSSCCCHHHHHHTCCTT------------------CCEEECCCSHHHHHHHHHHHHHSSCCCCE
T ss_pred CCEEEEEECCCCCCCCCCCCCHHHHHHHHHCCC------------------CEEEEECCCHHHHHHHHHHHHHHCCCCCE
T ss_conf 997999958899898031122089999971799------------------84999539999999999999973689858
Q ss_pred EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCC-CCCEEEEEEECHHHHHHHHHHHHCCCCC
Q ss_conf 999205454886666886666545799988888986057204866555577-9980999950546999999999739992
Q 001713 839 VVMSPKNLLRHKECKSNLSEFDDVQGHPGFDKQGTRFKRLIKDQNEHSDLE-EGIRRLILCSGKVYYELYEERKKHSASD 917 (1021)
Q Consensus 839 iv~~pK~Llr~~~~~s~~~e~~~~~~~~~~~~~~~~f~~vi~~~~~~~~~~-~g~~~~Iv~~G~~~~~l~~a~~~~~~~~ 917 (1021)
+|++||+|||++.++++++++.. +.|+.+|++.. +.+ +.++++|+|+|++|+++.+++++++..+
T Consensus 774 ii~~pk~l~r~~~~~~~~~~~~~-----------~~f~~~ig~~~---~~~g~dV~~vI~~~G~v~~~l~aa~~~l~~~~ 839 (933)
T 2jgd_A 774 VVMSPKSLLRHPLAVSSLEELAN-----------GTFLPAIGEID---ELDPKGVKRVVMCSGKVYYDLLEQRRKNNQHD 839 (933)
T ss_dssp EEEECSGGGGCTTCCBCHHHHHH-----------CCCCSEECCCS---CCCGGGCCEEEEECTTHHHHHHHHHHHTTCCS
T ss_pred EEEECCHHCCCCCCCCCCCCCCC-----------CCEEECCCCCE---EEECCCCEEEEEECHHHHHHHHHHHHHCCCCC
T ss_conf 99953121167777687444688-----------85121189654---86067611899976399999999998716688
Q ss_pred EEEEEECCCCCCCHHHHHHHHHCCCCC-EEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCC
Q ss_conf 999980444799989999999729996-0899833886564175299999998775104999967998279996799550
Q 001713 918 IAICRVEQLCPFPYDLVQRELKRYPNA-EVVWSQEEPMNMGAYTYIAPRLCTAMKAVDRGTMEDIKYVGRAPSAASATGF 996 (1021)
Q Consensus 918 v~ii~le~L~Pfp~~~i~~~v~k~~~~-~~vwvqEe~~n~G~~~~i~~~i~~~~~~l~~~~~~~~~~vgr~~~~~pa~g~ 996 (1021)
++|||+|||+|||.++|.++++||+++ .+|||||+++|||+|++|++++.+.+.. ..+++|+|||++++||+|+
T Consensus 840 v~VIdl~~l~Pld~e~i~~~~~k~~~~~~vv~veE~~~~gG~g~~v~~~l~~~~~~-----~~~v~~vg~~d~~~pa~g~ 914 (933)
T 2jgd_A 840 VAIVRIEQLYPFPHKAMQEVLQQFAHVKDFVWCQEEPLNQGAWYCSQHHFREVIPF-----GASLRYAGRPASASPAVGH 914 (933)
T ss_dssp EEEEEECEEESCCHHHHHHHHGGGTTCCEEEEEEEEETTSTTHHHHHHHHHTTSCT-----TCEEEEEEECCCSSSSCSC
T ss_pred EEEEEEECCCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCC-----CCCEEEEECCCCCCCCCCC
T ss_conf 59997501378999999999985799766999951887678899999999985656-----8866897038737787677
Q ss_pred HHHHHHHHHHHHHHHCCC
Q ss_conf 898989999999994099
Q 001713 997 YQVHVKEQSELMQKAIQP 1014 (1021)
Q Consensus 997 ~~~h~~e~~~i~~~a~~~ 1014 (1021)
.+.|.+||++|+++||+.
T Consensus 915 ~~~h~~~~~~i~~~a~~~ 932 (933)
T 2jgd_A 915 MSVHQKQQQDLVNDALNV 932 (933)
T ss_dssp HHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHCC
T ss_conf 899999899999998565
No 3
>2yic_A 2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.96A {Mycobacterium smegmatis} PDB: 2xta_A* 2y0p_A* 2xt9_A* 2yid_A*
Probab=1.00 E-value=1 Score=1669.79 Aligned_cols=842 Identities=44% Similarity=0.742 Sum_probs=771.4
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 79898999999999865822222499999878---999999965579992244541312853333444589997689999
Q 001713 115 IQESMRLLLLVRAYQVNGHMKAKLDPLGLEER---EIPDDLDPAFYGFTEADLDREFFLGVWSMAGFLSENRPVQTLRSI 191 (1021)
Q Consensus 115 ~~~~~~~~~li~ayr~~GH~~A~ldPL~~~~~---~~~~~l~~~~~g~~~~dl~~~~~~~~~~~~~~~~~~~~~~tl~ei 191 (1021)
+.++.++++||++||.|||+.|+||||++ .+ ..+++|++.+|||+++|||++|.++ +|. +...+||+||
T Consensus 5 ~~~~~~~~~li~~yr~~gh~~a~~dpl~~-~~~~~~~~~~l~~~~~g~~~~d~~~~~~~~-----~~~--~~~~~~l~~~ 76 (868)
T 2yic_A 5 EDKNARVIELIAAYRNRGHLMADIDPLRL-DNTRFRSHPDLDVNSHGLTLWDLDREFKVD-----GFA--GVQRKKLRDI 76 (868)
T ss_dssp --CHHHHHHHHHHHHHHGGGTSCCCTTCC-CTHHHHC-----------CCSTTSSBC---------------CCCBHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCEECCCCCC-CCCCCCCCCCCCHHHCCCCHHHHCCEECCC-----CCC--CCCCCCHHHH
T ss_conf 88999999999999984720034489999-877788887668876499958707803368-----756--7676779999
Q ss_pred HHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCH
Q ss_conf 99999872275221232358998999999961899999999989999999999997899999999740751444785324
Q 001713 192 LTRLEQAYCGSIGFEYMHISDREKCNWLRDKIETPTPMQYNRQRREVILDRLVWSTQFENFLATKWTTAKRFGLEGGETL 271 (1021)
Q Consensus 192 ~~~l~~~Ycg~ig~E~~hi~~~e~~~Wl~~~~E~~~~~~~s~e~~~~il~~m~~ar~fE~~l~~~~~~~Krfg~eG~Ea~ 271 (1021)
+++|+++|||+||+|||||.|++++.|+++++|+.. +.+++|+++++|++|+++|.||+++.++|+++||||++|||++
T Consensus 77 ~~~l~~~yc~~ig~e~~~i~~~~~~~w~~~~~e~~~-~~~s~e~~~~~y~~m~~~R~fE~~l~~~~~~~k~~g~~G~Ea~ 155 (868)
T 2yic_A 77 LSVLRDAYCRHVGVEYTHILEPEQQRWIQERVETKH-DKPTVAEQKYILSKLNAAEAFETFLQTKYVGQKRFSLEGAETV 155 (868)
T ss_dssp HHHHHHHHSSSEEEECTTCSCHHHHHHHHHHHSSCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHCSSCGGGCCTTCTTH
T ss_pred HHHHHHHHCCCCCCCEECCCCHHHHHHHHHHHCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHH
T ss_conf 999998515877753334689688589999860677-7899999999999999999999999999744881467772778
Q ss_pred HHHHHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHCCCCHHHHHHHHCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 889999999976079873998189631799999840999999999820999999-8777545788753444334789899
Q 001713 272 IPGMKEMFDRAADLGVESIVIGMPHRGRLNVLGNVVRKPLRQIFSEFSGGTRPV-DEVGLYTGTGDVKYHLGTSYDRPTR 350 (1021)
Q Consensus 272 i~gl~~~l~~~~~~gv~D~vigm~HRgrln~La~v~g~p~~~if~Ef~G~~~~~-~~G~~~ggsgDvkyHlg~~~~~~~~ 350 (1021)
+||++.+++.++.+|++|+++||+||||+|+|+|++|+|+.+||+||+|+.+++ +. |+|||+||+|++....+.
T Consensus 156 ~~g~~~~l~~~~~l~~~D~v~gm~hRg~~~~Lan~~G~~~~~i~ae~~G~~~g~~~~-----g~gdv~~Hlg~~~~~~~~ 230 (868)
T 2yic_A 156 IPMMDAVIDQCAEHGLDEVVIAMPHRGRLNVLANIVGKPYSQIFSEFEGNLNPSQAH-----GSGDVKYHLGATGTYIQM 230 (868)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEECCSTTHHHHHHHTTCCCHHHHTTTCC-----------------CGGGTCCEEEEEECS
T ss_pred HHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHCCCHHHHHHHHCCCCCCCCCC-----CCCCCCCCCCCCCCCCCC
T ss_conf 999999998764079877997346422677899872998999999962888887657-----899733347753224456
Q ss_pred -CCCCEEEEECCCCCCCCCCCCEEEHHHHHHHHHCCCCCC-----CCCEEEEEECCCCCCCCCHHHHHHHHCCCCCCCCC
Q ss_conf -984024422035687666655231377774873099889-----87579999575334774279999982399999855
Q 001713 351 -GGKRIHLSLVANPSHLEAVDPVVIGKTRAKQYYSNDMDR-----TKNMAVLIHGDGSFAGQGVVYETLHLSALPNYSIG 424 (1021)
Q Consensus 351 -~g~~i~l~l~~npShLg~~~PvA~G~A~A~q~~~~d~~~-----~~~v~i~~~GDgA~sGqG~v~EalnlA~LP~y~~G 424 (1021)
+++.+++++++||||||+++|+|+|+|+|.|+++.+.++ .+.+++|+||||+|++||+|||+||+|.+.+|.||
T Consensus 231 ~g~~~v~l~l~~n~s~Lg~~~P~A~G~A~A~k~~~~~~~~~~~~~~~~~vv~~~GDGa~~~eG~v~Ealn~A~~~~lp~g 310 (868)
T 2yic_A 231 FGDNDIEVSLTANPSHLEAVDPVLEGLVRAKQDLLDTGEEGSDNRFSVVPLMLHGDAAFAGQGVVAETLNLALLRGYRTG 310 (868)
T ss_dssp SSSCEEEEEECCCCSSTTTTHHHHHHHHHHHHHHHTCSTTSSSCSCCEEEEEEEEHHHHHHCHHHHHHHTTTTCTTTCCS
T ss_pred CCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCC
T ss_conf 78760466406777531243139999999887652477665546688269999788644456499999999874198988
Q ss_pred CEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCC
Q ss_conf 28999991981333489887665268888814495499991899999999999999998805997999972000689878
Q 001713 425 GTIHIVVNNQVAFTTDPMSGRSSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYRRFGHNE 504 (1021)
Q Consensus 425 GvI~IV~NNqig~tT~~~~~rs~~~~sd~aka~g~p~~~VdG~D~~aV~~a~~~A~e~rr~~~~PvlIe~~tYR~~GHne 504 (1021)
|+||||+||||||||++.+++++.+++++|++||+|+++|||+|+++|++|+++|++|+|++++|++||++|||++|||+
T Consensus 311 ~vi~iv~NN~~g~st~~~~~~s~~~~~~~a~a~G~p~~~VdG~D~~av~~a~~~A~~~ar~~~~PvlIe~~tyR~~GHs~ 390 (868)
T 2yic_A 311 GTIHIVVNNQIGFTTAPTDSRSSEYCTDVAKMIGAPIFHVNGDDPEACAWVARLAVDFRQAFKKDVVIDMLCYRRRGHNE 390 (868)
T ss_dssp CCEEEEEECSCBTTBCHHHHCSSSSTTGGGGGGTCCEEEEETTCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCSCSST
T ss_pred CEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCC
T ss_conf 76999981884642472014266479999986798189991899999999999999999837997899999665788376
Q ss_pred CCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCHHCCC-CCCCH--HHHHCCCCC
Q ss_conf 999998898989999909999999999999836899999999999999999999998010499-95211--122005999
Q 001713 505 IDEPSFTQPKMYKIIRSHPSSLEIYQNKLLECQHVTQEDINKIQEKVNRILSEEFVASKDYVP-NRRDW--LSAYWSGFK 581 (1021)
Q Consensus 505 ~D~p~ytqp~~y~~i~~~~dpi~~y~~~Li~~Gi~t~ee~~~i~~~~~~~l~~a~~~A~~~~p-~~~~~--~~~~~~~~~ 581 (1021)
+|+|+||+|.||+.|++++||+.+|+++|+++|++|++++++++++++++++++++.|++..| .+.+| +...|.+
T Consensus 391 ~D~p~~~~p~~~~~~~~~~dPi~~~~~~L~~~G~~t~ee~~~i~~e~~~~v~~a~~~a~~~~p~~~~~~~~~~~~~~~-- 468 (868)
T 2yic_A 391 GDDPSMTQPYMYDVIDTKRGSRKAYTEALIGRGDISMKEAEDALRDYQGQLERVFNEVRELEKHEIEPSESVEADQQI-- 468 (868)
T ss_dssp TCCGGGTCHHHHHHHTTCCCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHC----------------
T ss_pred CCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC--
T ss_conf 666645795999999857999999999999769999999999999999999999999874288885563101433345--
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCEEEECC
Q ss_conf 93000125899987689999987660389998763104999999999862398768899999999998834981999733
Q 001713 582 SPEQLSRIRNTGVKPEILKNVGKAITTLPENFKPHRGVKKVYELRAQMIETGEGIDWALGEALAFATLLVEGNHVRLSGQ 661 (1021)
Q Consensus 582 ~~~~~~~~~~t~v~~~~l~~i~~~~~~~P~~f~~h~~l~~~~~~R~~~~~~~~~idw~~ae~lA~~~ll~~~~~Vrl~Gq 661 (1021)
....+|+++.+.|+.++++++.+|++|++|+++.++++.|.+|+++ +.|||+++|+|||++||.+|++||++||
T Consensus 469 -----~~~~~t~~~~~~l~~~~~~~~~~p~~~~~~~~v~~~~~~R~~m~~~-~~i~~a~~e~la~~~l~~~~~~V~~~G~ 542 (868)
T 2yic_A 469 -----PSKLATAVDKAMLQRIGDAHLALPEGFTVHPRVRPVLEKRREMAYE-GRIDWAFAELLALGSLIAEGKLVRLSGQ 542 (868)
T ss_dssp --------CCCCCCHHHHHHHHHHTTCCCTTCCCCTTTHHHHHHHHHHHHH-CCBCHHHHHHHHHHHHHHTTCEEEEEET
T ss_pred -----CCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHCCCCEEEECC
T ss_conf -----5677774579999999985056986566326677888789987530-0455899999999999843998899867
Q ss_pred CCCCCCCCCCCCEECCCCCCCEECCCCCC------CCCCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCCCEEEHHHHHH
Q ss_conf 47985223311200027767411147886------335677662875576346789889873116799730371143330
Q 001713 662 DVERGTFSHRHSVLHDQETGEQYCPLDHV------MMNQDAEMFTVSNSSLSEFGVLGFELGYSMENPNSLVMWEAQFGD 735 (1021)
Q Consensus 662 Dv~rGtF~~RHav~~dq~t~~~y~pL~~l------~~~~~~g~~rV~nspLSE~~vlGfe~G~s~~g~~~lviwEaqFgD 735 (1021)
||+||||+|||||||||+|+..|.||++| . ++++++||+||||||++++|||+|||+.|+++++|||+||+|
T Consensus 543 Dv~~~Tfs~rh~v~~d~~~g~~~~~~~~l~~~~~~~--~~~~p~Rv~ds~IsE~~~vG~a~G~A~~G~~~~~i~eaqf~d 620 (868)
T 2yic_A 543 DTQRGTFTQRHAVIVDRKTGEEFTPLQLLATNPDGT--PTGGKFLVYNSALSEFAAVGFEYGYSVGNPDAMVLWEAQFGD 620 (868)
T ss_dssp TTTTCTTSCCCSSEECTTTCCEECGGGGGGBCTTSC--BCSCEEEEEECCSCSHHHHHHHHHHHHHCTTSEEEEECSSGG
T ss_pred CCCCCCHHHCCHHCCCCCCCCEECCHHHHCCCCCCH--HHCCCCEEEECCCCHHHHHHHHHHHHCCCCCCCEEEEEEHHH
T ss_conf 678640001000000157886640223212133320--221985799877128999999999870599885489986277
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCHHHHCCCCCCEEEEE
Q ss_conf 58548999999996464440586662999195579999677686266764104899986457883011002555809996
Q 001713 736 FANGAQVIFDQFVNSGESKWLRQSGLVVMLPHGYDGQGPEHSSARLERFLQMSDDNPYVIPEMDSTLRTQIQECNWQIVN 815 (1021)
Q Consensus 736 F~n~Aq~iiDqfi~~~~~kw~~~~~lV~~lPhG~~G~GpeHSs~r~Er~Lql~~e~~~~~~~~pg~~~~~~~~~Nl~V~~ 815 (1021)
|+|+||+++|||++++++||++++|||+++||||+|+||+|||+|+|+|||||+. | ||+|++
T Consensus 621 F~~~AQ~~~DQ~i~~~~~k~~~~~~vvi~~p~G~~G~Gp~Hs~~~~E~~l~l~~~--------p----------nm~V~~ 682 (868)
T 2yic_A 621 FVNGAQSIIDEFISSGEAKWGQLSDVVLLLPHGHEGQGPDHTSGRIERFLQLWAE--------G----------SMTIAM 682 (868)
T ss_dssp GGGGGHHHHHHTTTTHHHHHCCCCCCEEEEECCCSSSCTTSSCCCHHHHHHHCCT--------T----------SCEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHCCCCHHHHHHCCCC--------C----------CCEEEE
T ss_conf 7754788899999999998478999799966778888834307758889851789--------9----------988997
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCEE-
Q ss_conf 3997899999999986079981999920545488666688666654579998888898605720486655557799809-
Q 001713 816 VTTPANYFHVLRRQIHREFRKPLVVMSPKNLLRHKECKSNLSEFDDVQGHPGFDKQGTRFKRLIKDQNEHSDLEEGIRR- 894 (1021)
Q Consensus 816 pstpad~fhlLrrqi~~~~~~Pliv~~pK~Llr~~~~~s~~~e~~~~~~~~~~~~~~~~f~~vi~~~~~~~~~~~g~~~- 894 (1021)
||||+|+|||||+|+++++++|+|||+||+|||++.++++++++.+ +.|+++|++...+...++|.|+
T Consensus 683 Ps~p~~~~~lLr~a~~~~~~~Pvii~~pk~llR~~~~~~~~~~~~~-----------~~f~~~ig~~~~~~~l~~g~dv~ 751 (868)
T 2yic_A 683 PSTPANYFHLLRRHGKDGIQRPLIVFTPKSMLRNKAAVSDIRDFTE-----------SKFRSVLEEPMYTDGEGDRNKVT 751 (868)
T ss_dssp CCSHHHHHHHHHHHHHSSCCCCEEEEECSGGGGCTTSCBCHHHHHS-----------CCCCSEECCHHHHTSSCCGGGCC
T ss_pred ECCHHHHHHHHHHHHHCCCCCCEEEEECHHHHCCCCCCCCCCCCCC-----------CCCEECCCCCEEECCCCCCCCEE
T ss_conf 2999999999999985378983899965687078888897323689-----------87220589663204411677303
Q ss_pred -EEEEECHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHCCCCC-EEEEEECCCCCCCHHHHHHHHHHHHHHH
Q ss_conf -99950546999999999739992999980444799989999999729996-0899833886564175299999998775
Q 001713 895 -LILCSGKVYYELYEERKKHSASDIAICRVEQLCPFPYDLVQRELKRYPNA-EVVWSQEEPMNMGAYTYIAPRLCTAMKA 972 (1021)
Q Consensus 895 -~Iv~~G~~~~~l~~a~~~~~~~~v~ii~le~L~Pfp~~~i~~~v~k~~~~-~~vwvqEe~~n~G~~~~i~~~i~~~~~~ 972 (1021)
+|||||++|+++.+++++.+.++++|||+|||+|||.++|.++++||+++ ++|||||+++|||+|++|++++.+.+..
T Consensus 752 r~Ii~~G~~~~~l~aa~~~~g~i~v~VIdl~~l~Pld~~~i~~~~~k~~~~~~vv~veE~~~~gG~g~~v~~~l~e~~~~ 831 (868)
T 2yic_A 752 RLLLTSGKIYYELAARKAKENREDVAIVRIEQLAPLPRRRLAETLDRYPNVKEKFWVQEEPANQGAWPSFGLTLPEILPD 831 (868)
T ss_dssp EEEEECSTHHHHHHHHHHHHTCTTEEEEEECEEESCCHHHHHHHHHTCTTCCEEEEEEEEETTSTTHHHHHHHHHHHCHH
T ss_pred EEEEEECHHHHHHHHHHHHCCCCCEEEEEEEECCCCCHHHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHH
T ss_conf 99999557999999999967998779998621279999999999986699862999972897778399999999997343
Q ss_pred HCCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCC
Q ss_conf 10499996799827999679955089898999999999409
Q 001713 973 VDRGTMEDIKYVGRAPSAASATGFYQVHVKEQSELMQKAIQ 1013 (1021)
Q Consensus 973 l~~~~~~~~~~vgr~~~~~pa~g~~~~h~~e~~~i~~~a~~ 1013 (1021)
|+ .+++|+||+++++||+|+.+.|.+||++|+++||+
T Consensus 832 l~----~~v~~vg~~d~~~p~~g~~~~h~~~~~~~~~~a~~ 868 (868)
T 2yic_A 832 HF----TGLKRISRRAMSAPSSGSSKVHAVEQQEILDTAFG 868 (868)
T ss_dssp HH----TTCEEEEECCCSSSSCSCHHHHHHHHHHHHHHHTC
T ss_pred CC----CCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHC
T ss_conf 18----98689636876778888888887899999999749
No 4
>1qs0_A 2-oxoisovalerate dehydrogenase alpha-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.11 PDB: 2bp7_A
Probab=1.00 E-value=1 Score=504.83 Aligned_cols=335 Identities=15% Similarity=0.186 Sum_probs=297.7
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC----CCCCCCCHHHHH
Q ss_conf 2752212323589989999999618999999999899999999999978999999997407514----447853248899
Q 001713 200 CGSIGFEYMHISDREKCNWLRDKIETPTPMQYNRQRREVILDRLVWSTQFENFLATKWTTAKRF----GLEGGETLIPGM 275 (1021)
Q Consensus 200 cg~ig~E~~hi~~~e~~~Wl~~~~E~~~~~~~s~e~~~~il~~m~~ar~fE~~l~~~~~~~Krf----g~eG~Ea~i~gl 275 (1021)
..++++++++|.|++++ |+. +..+.+++++++++|+.|+++|.||+++.++|++ |++ +++|||++++|+
T Consensus 46 ~~~~~~~~~~~ld~~g~-~~~-----~~~~~~~~e~~~~~y~~M~~~R~fe~~~~~~~~q-gr~~~~~~~~GqEA~~vg~ 118 (407)
T 1qs0_A 46 TADLSYSLVRVLDEQGD-AQG-----PWAEDIDPQILRQGMRAMLKTRIFDSRMVVAQRQ-KKMSFYMQSLGEEAIGSGQ 118 (407)
T ss_dssp GHHHHTSCBCCBCTTSC-BCS-----GGGSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHT-TSSSCCCCCTTTHHHHHHH
T ss_pred HHCCCCCEEEEECCCCC-CCC-----CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCCCCCCCCHHHHHHHH
T ss_conf 61568872799899888-878-----6779989999999999999999999999999858-9315676879759999999
Q ss_pred HHHHHHHHHCCCCCEEECCCCCCHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCE
Q ss_conf 99999976079873998189631799999840999999999820999999877754578875344433478989998402
Q 001713 276 KEMFDRAADLGVESIVIGMPHRGRLNVLGNVVRKPLRQIFSEFSGGTRPVDEVGLYTGTGDVKYHLGTSYDRPTRGGKRI 355 (1021)
Q Consensus 276 ~~~l~~~~~~gv~D~vigm~HRgrln~La~v~g~p~~~if~Ef~G~~~~~~~G~~~ggsgDvkyHlg~~~~~~~~~g~~i 355 (1021)
+.+|+. +|+++ |+||+|+++|++ |+++.+||+||+|+..+.++| ++++||++. .+
T Consensus 119 ~~al~~------~D~v~-~~yR~~~~~l~~--g~~~~~i~~el~g~~~~~~~G------~g~~~h~~~-~~--------- 173 (407)
T 1qs0_A 119 ALALNR------TDMCF-PTYRQQSILMAR--DVSLVEMICQLLSNERDPLKG------RQLPIMYSV-RE--------- 173 (407)
T ss_dssp HHHSCT------TSEEE-CCSSCHHHHHHT--TCCHHHHHHHHHTCTTCTTTT------CSCTTCCCB-GG---------
T ss_pred HHHCCC------CCEEE-ECCCCHHHHHHC--CCCHHHHHHHHHCCCCCCCCC------CCCEEECCH-HC---------
T ss_conf 986699------88999-656435778853--777999999982889998889------976143120-10---------
Q ss_pred EEEECCCCCCCCCCCCEEEHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHC---CCCCCCCCCEEEEEEC
Q ss_conf 4422035687666655231377774873099889875799995753347742799999823---9999985528999991
Q 001713 356 HLSLVANPSHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS---ALPNYSIGGTIHIVVN 432 (1021)
Q Consensus 356 ~l~l~~npShLg~~~PvA~G~A~A~q~~~~d~~~~~~v~i~~~GDgA~sGqG~v~EalnlA---~LP~y~~GGvI~IV~N 432 (1021)
+++.+++|+||.++|+|+|+|+|.++++.+ .++||++|||+++ ||.+||+||+| +|| +||||+|
T Consensus 174 -~~~~~~~g~lG~~lp~AvGaA~A~k~~~~~-----~~vv~i~GDGa~~-~G~~~Eal~~A~~~~lp------vi~Vv~N 240 (407)
T 1qs0_A 174 -AGFFTISGNLATQFVQAVGWAMASAIKGDT-----KIASAWIGDGATA-ESDFHTALTFAHVYRAP------VILNVVN 240 (407)
T ss_dssp -GTBCCCCSSSSHHHHHHHHHHHHHHHTTCC-----CCEEEEEETGGGG-SHHHHHHHHHHHHHTCC------EEEEEEE
T ss_pred -CCCCCCCCCCCCCHHHHHHHHHHHHHHCCC-----CEEEEEECCCHHH-CCHHHHHHHHHHHHCCC------EEEEEEC
T ss_conf -471335642455214899999999974898-----7799997886132-17699999999997819------8999987
Q ss_pred CCCCCCCCCCCCC-CCCCHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCC-C
Q ss_conf 9813334898876-6526888881449549999189999999999999999880599799997200068987899999-8
Q 001713 433 NQVAFTTDPMSGR-SSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYRRFGHNEIDEPS-F 510 (1021)
Q Consensus 433 Nqig~tT~~~~~r-s~~~~sd~aka~g~p~~~VdG~D~~aV~~a~~~A~e~rr~~~~PvlIe~~tYR~~GHne~D~p~-y 510 (1021)
|+|||+|+...+. ...+++++|++||+|+++|||+|+++|+.+++.|++++|++++|++||++|||.+|||++|+|+ |
T Consensus 241 N~~gi~~~~~~~~~~~~d~a~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~Ghs~~Dd~~~Y 320 (407)
T 1qs0_A 241 NQWAISTFQAIAGGESTTFAGRGVGCGIASLRVDGNDFVAVYAASRWAAERARRGLGPSLIEWVTYRAGPHSTSDDPSKY 320 (407)
T ss_dssp CSEETTEEGGGGTTTTCCSTHHHHHTTCEEEEEETTCHHHHHHHHHHHHHHHHTTSCCEEEEEECCCCSCSSTTCCGGGT
T ss_pred CCCCEEECCCCCCCCCCCHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCC
T ss_conf 97302654300057888999999876970899818999999999999999998369988999996526886888783334
Q ss_pred CCHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCHHC------C-CCCCCHHHHHCCCC
Q ss_conf 8989899999099999999999998368999999999999999999999980104------9-99521112200599
Q 001713 511 TQPKMYKIIRSHPSSLEIYQNKLLECQHVTQEDINKIQEKVNRILSEEFVASKDY------V-PNRRDWLSAYWSGF 580 (1021)
Q Consensus 511 tqp~~y~~i~~~~dpi~~y~~~Li~~Gi~t~ee~~~i~~~~~~~l~~a~~~A~~~------~-p~~~~~~~~~~~~~ 580 (1021)
|+++|++.|+ .+||+.+|+++|+++|++|+++++++++++++++++++++|++. + |++.++++++|.++
T Consensus 321 r~~~e~~~~~-~~DPi~~~~~~L~~~g~~~~~~~~~i~~~~~~~v~~a~~~a~~~~~~~~~p~p~~~~~~~~vy~~~ 396 (407)
T 1qs0_A 321 RPADDWSHFP-LGDPIARLKQHLIKIGHWSEEEHQATTAEFEAAVIAAQKEAEQYGTLANGHIPSAASMFEDVYKEM 396 (407)
T ss_dssp SCTTHHHHCT-TCCHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHHHHTTCCSSSCCCCCSSGGGSSSSSSC
T ss_pred CCHHHHHHHH-CCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCC
T ss_conf 7989998775-099999999999977998999999999999999999999998353445789979899973405799
No 5
>2bfd_A 2-oxoisovalerate dehydrogenase alpha subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.11 PDB: 1v16_A* 2bfc_A* 1v1r_A* 1olu_A* 2bfb_A* 1v1m_A* 2bew_A* 1dtw_A* 1olx_A* 1ols_A* 1wci_A* 1x80_A* 2beu_A* 1u5b_A* 2bev_A* 1v11_A* 1x7x_A* 1x7y_A* 1x7w_A* 1x7z_A* ...
Probab=1.00 E-value=1 Score=504.38 Aligned_cols=361 Identities=15% Similarity=0.190 Sum_probs=316.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC---CCCCCCCCHHHHHHHHH
Q ss_conf 221232358998999999961899999999989999999999997899999999740751---44478532488999999
Q 001713 203 IGFEYMHISDREKCNWLRDKIETPTPMQYNRQRREVILDRLVWSTQFENFLATKWTTAKR---FGLEGGETLIPGMKEMF 279 (1021)
Q Consensus 203 ig~E~~hi~~~e~~~Wl~~~~E~~~~~~~s~e~~~~il~~m~~ar~fE~~l~~~~~~~Kr---fg~eG~Ea~i~gl~~~l 279 (1021)
.++++++|.|++++ |+.. ...+.+++++++++|+.|+++|.||+++.++|+++|. ++++|||++++|+..++
T Consensus 29 ~~~~~~~~l~~~g~-~~~~----~~~~~~~~e~~~~~y~~M~~~r~fe~~~~~~~~~gri~~~~~~~GqEa~~vg~~~al 103 (400)
T 2bfd_A 29 SGIPIYRVMDRQGQ-IINP----SEDPHLPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNYGEEGTHVGSAAAL 103 (400)
T ss_dssp SCSCEECSBCTTSC-BSCG----GGCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCCCCCTTCHHHHHHHHHTS
T ss_pred CCCCEEEEECCCCC-CCCC----CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHC
T ss_conf 78871689999998-8786----446898999999999999999999999999974697000026897589999999863
Q ss_pred HHHHHCCCCCEEECCCCCCHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE
Q ss_conf 99760798739981896317999998409999999998209999998777545788753444334789899984024422
Q 001713 280 DRAADLGVESIVIGMPHRGRLNVLGNVVRKPLRQIFSEFSGGTRPVDEVGLYTGTGDVKYHLGTSYDRPTRGGKRIHLSL 359 (1021)
Q Consensus 280 ~~~~~~gv~D~vigm~HRgrln~La~v~g~p~~~if~Ef~G~~~~~~~G~~~ggsgDvkyHlg~~~~~~~~~g~~i~l~l 359 (1021)
+. +|++++ +||||+.++++ |+++.++|+||+|+.++.+.| ++++||++ +.. +++
T Consensus 104 ~~------~D~v~~-~yR~~~~~~~~--G~~~~~~l~e~~g~~~g~~~G------~~~~~H~~-~~~----------~~~ 157 (400)
T 2bfd_A 104 DN------TDLVFG-QAREAGVLMYR--DYPLELFMAQCYGNISDLGKG------RQMPVHYG-CKE----------RHF 157 (400)
T ss_dssp CT------TSEEEC-CSCCHHHHHHT--TCCHHHHHHHHHTCTTCTTTT------CSCSSCCC-BTT----------TTB
T ss_pred CC------CCEEEE-CCCCHHHHHHC--CCCHHHHHHHHCCCCCCCCCC------CCCCCCCC-CCC----------CCC
T ss_conf 88------889995-57589999984--999999999855988888899------99875786-444----------671
Q ss_pred CCCCCCCCCCCCEEEHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHC---CCCCCCCCCEEEEEECCCCC
Q ss_conf 035687666655231377774873099889875799995753347742799999823---99999855289999919813
Q 001713 360 VANPSHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS---ALPNYSIGGTIHIVVNNQVA 436 (1021)
Q Consensus 360 ~~npShLg~~~PvA~G~A~A~q~~~~d~~~~~~v~i~~~GDgA~sGqG~v~EalnlA---~LP~y~~GGvI~IV~NNqig 436 (1021)
.+++|+||.++|+|+|+|+|.++.+.+ .+++|++|||+++ +|+|||+||+| +|| +||||.||+|+
T Consensus 158 ~~~~g~lG~~lp~AvG~AlA~~~~~~~-----~~vv~~~GDGa~~-~G~~~Eal~~A~~~~lp------vi~vv~NN~~~ 225 (400)
T 2bfd_A 158 VTISSPLATQIPQAVGAAYAAKRANAN-----RVVICYFGEGAAS-EGDAHAGFNFAATLECP------IIFFCRNNGYA 225 (400)
T ss_dssp CCCCSSTTTHHHHHHHHHHHHHHHTCC-----CCEEEEEETTGGG-SHHHHHHHHHHHHTTCC------EEEEEEECSEE
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHCCC-----CEEEEEECCHHHH-CCHHHHHHHHHHHHCCC------EEEEEECCCEE
T ss_conf 356765456502899999802653899-----7699997860220-37099999999997829------79999889634
Q ss_pred CCCCCCCCCCCCCHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCC-CCCHHH
Q ss_conf 3348988766526888881449549999189999999999999999880599799997200068987899999-889898
Q 001713 437 FTTDPMSGRSSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYRRFGHNEIDEPS-FTQPKM 515 (1021)
Q Consensus 437 ~tT~~~~~rs~~~~sd~aka~g~p~~~VdG~D~~aV~~a~~~A~e~rr~~~~PvlIe~~tYR~~GHne~D~p~-ytqp~~ 515 (1021)
++|+...+++..+++++|++||+|+++|||+|+++|+.+++.|++++|++++|+||+++|||++|||++|+|+ ||+++|
T Consensus 226 i~~~~~~~~~~~d~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~~P~lIe~~tyR~~gHs~~D~~~~Yr~~~e 305 (400)
T 2bfd_A 226 ISTPTSEQYRGDGIAARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRIGHASTSDDSSAFRSVDE 305 (400)
T ss_dssp TTEEGGGTCSSSTTGGGTGGGTCEEEEEETTCHHHHHHHHHHHHHHHHHHTCCEEEEEECCCCC--CC------------
T ss_pred EEECCCCCCCCCCHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCCCCCCCHHH
T ss_conf 66361335788899999998698679981899999999999999998707998899998653078888788766789999
Q ss_pred HHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCHHCC-CCCCCHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 999990999999999999983689999999999999999999999801049-9952111220059999300012589998
Q 001713 516 YKIIRSHPSSLEIYQNKLLECQHVTQEDINKIQEKVNRILSEEFVASKDYV-PNRRDWLSAYWSGFKSPEQLSRIRNTGV 594 (1021)
Q Consensus 516 y~~i~~~~dpi~~y~~~Li~~Gi~t~ee~~~i~~~~~~~l~~a~~~A~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~t~v 594 (1021)
++.|++++||+.+|+++|++.|++++++++++++++.++++++++.+++.+ |+..+.+.++|... ++.
T Consensus 306 ~~~~~~~~dPl~~~~~~L~~~g~~~~~~~~~i~~~~~~~v~~a~~~a~~~~~p~~~~~~~~vy~~~-----------~~~ 374 (400)
T 2bfd_A 306 VNYWDKQDHPISRLRHYLLSQGWWDEEQEKAWRKQSRRKVMEAFEQAERKPKPNPNLLFSDVYQEM-----------PAQ 374 (400)
T ss_dssp -------CCHHHHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHSCBCCGGGGSTTSSSSC-----------CHH
T ss_pred HHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCC-----------CHH
T ss_conf 999984598899999999987999868899999999999999999997189999999997741369-----------988
Q ss_pred CHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 76899999876603899987631
Q 001713 595 KPEILKNVGKAITTLPENFKPHR 617 (1021)
Q Consensus 595 ~~~~l~~i~~~~~~~P~~f~~h~ 617 (1021)
..+++..+.+.+...|++|....
T Consensus 375 l~~q~~~~~~~~~~~~~~~~~~~ 397 (400)
T 2bfd_A 375 LRKQQESLARHLQTYGEHYPLDH 397 (400)
T ss_dssp HHHHHHHHHHHHHHHGGGSCGGG
T ss_pred HHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 99999999999975877687534
No 6
>2ozl_A PDHE1-A type I, pyruvate dehydrogenase E1 component alpha subunit, somatic form; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.11 PDB: 1ni4_A* 3exe_A* 3exi_A 3exh_A* 3exg_A 3exf_A*
Probab=1.00 E-value=1 Score=488.28 Aligned_cols=311 Identities=17% Similarity=0.244 Sum_probs=277.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC----CCCCCCHHHHHHHHHHHHHHCCCCCEEECCCCCCHHHHHH
Q ss_conf 999998999999999999789999999974075144----4785324889999999976079873998189631799999
Q 001713 229 MQYNRQRREVILDRLVWSTQFENFLATKWTTAKRFG----LEGGETLIPGMKEMFDRAADLGVESIVIGMPHRGRLNVLG 304 (1021)
Q Consensus 229 ~~~s~e~~~~il~~m~~ar~fE~~l~~~~~~~Krfg----~eG~Ea~i~gl~~~l~~~~~~gv~D~vigm~HRgrln~La 304 (1021)
+.+++++++++|+.|+++|.||+++..+|++++..| ++|||++++|+..+|++ +|+++ ++||+|+.+++
T Consensus 29 ~~l~~e~l~~~yr~M~~~R~~e~~~~~l~~~g~i~gf~~~~~GqEa~~vg~~~al~~------~D~i~-~~yR~~~~~~~ 101 (365)
T 2ozl_A 29 TVLTREDGLKYYRMMQTVRRMELKADQLYKQKIIRGFCHLCDGQEACCVGLEAGINP------TDHLI-TAYRAHGFTFT 101 (365)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCSCCCCCTTCHHHHHHHHHTSCT------TSEEE-CCSCCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCC------CCEEE-HHHHHHHHHHH
T ss_conf 799999999999999999999999999974683430015899809999999985078------99996-07878999996
Q ss_pred HHCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCEEEHHHHHHHHHC
Q ss_conf 84099999999982099999987775457887534443347898999840244220356876666552313777748730
Q 001713 305 NVVRKPLRQIFSEFSGGTRPVDEVGLYTGTGDVKYHLGTSYDRPTRGGKRIHLSLVANPSHLEAVDPVVIGKTRAKQYYS 384 (1021)
Q Consensus 305 ~v~g~p~~~if~Ef~G~~~~~~~G~~~ggsgDvkyHlg~~~~~~~~~g~~i~l~l~~npShLg~~~PvA~G~A~A~q~~~ 384 (1021)
+ |+|+.++|+||+|+.++.+.| ++|+ ||++ +. + +.+..+++|.++|+|+|+|+|.++++
T Consensus 102 ~--G~~~~~i~~e~~g~~~g~~~g--~gg~----~H~~-~~--~----------~~~~~g~~G~~lp~A~G~A~A~~~~~ 160 (365)
T 2ozl_A 102 R--GLSVREILAELTGRKGGCAKG--KGGS----MHMY-AK--N----------FYGGNGIVGAQVPLGAGIALACKYNG 160 (365)
T ss_dssp T--TCCHHHHHHHHTTCTTSTTTT--SSCT----TCCC-BT--T----------BCCCCCSTTTHHHHHHHHHHHHHHHT
T ss_pred C--CCCHHHHHHHHCCCCCCCCCC--CCCC----CCCC-CC--C----------CCCCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 0--998999999976898888889--8998----7767-66--6----------67886513123679999999777608
Q ss_pred CCCCCCCCEEEEEECCCCCCCCCHHHHHHHHC---CCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHCCCCE
Q ss_conf 99889875799995753347742799999823---999998552899999198133348988766526888881449549
Q 001713 385 NDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS---ALPNYSIGGTIHIVVNNQVAFTTDPMSGRSSQYCTDVAKALDAPI 461 (1021)
Q Consensus 385 ~d~~~~~~v~i~~~GDgA~sGqG~v~EalnlA---~LP~y~~GGvI~IV~NNqig~tT~~~~~rs~~~~sd~aka~g~p~ 461 (1021)
.+ .++||++|||+++ ||++||+||+| +|| +||||+||+|||+|+......+.++.. +++|+|+
T Consensus 161 ~~-----~~vv~~~GDGa~~-~G~~~Ealn~A~~~~lp------vi~vv~NN~~g~~t~~~~~~~~~~~~~--ra~g~p~ 226 (365)
T 2ozl_A 161 KD-----EVCLTLYGDGAAN-QGQIFEAYNMAALWKLP------CIFICENNRYGMGTSVERAAASTDYYK--RGDFIPG 226 (365)
T ss_dssp CC-----CCEEEEEETTGGG-CHHHHHHHHHHHHTTCC------EEEEEEECSEETTEEHHHHCSCCCGGG--TTTTSCE
T ss_pred CC-----CEEEEEECCHHHH-CCHHHHHHHHHHHHCCC------EEEEEECCCCCCCCCCCCCCCCCCHHH--HHCCCCE
T ss_conf 99-----6699997753530-14799999999997809------799998898256777553068889999--8589877
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCC-CCCHHHHHHHHHCCCHHHHHHHHHHHCCCCC
Q ss_conf 999189999999999999999880599799997200068987899999-8898989999909999999999999836899
Q 001713 462 FHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYRRFGHNEIDEPS-FTQPKMYKIIRSHPSSLEIYQNKLLECQHVT 540 (1021)
Q Consensus 462 ~~VdG~D~~aV~~a~~~A~e~rr~~~~PvlIe~~tYR~~GHne~D~p~-ytqp~~y~~i~~~~dpi~~y~~~Li~~Gi~t 540 (1021)
++|||+|+++|+.+++.|+++++++++|+|||++|||++|||++|++. ||+|+||+.|++++||+.+|+++|+++|++|
T Consensus 227 ~~VdG~D~~av~~a~~~A~~~~r~~~gP~lIe~~t~R~~gHs~~D~~~~Yr~~~e~~~~~~~~dpi~~~~~~L~~~g~~~ 306 (365)
T 2ozl_A 227 LRVDGMDILCVREATRFAAAYCRSGKGPILMELQTYRYHGHEMSDPGVSYRTREEIQEVRSKSDPIMLLKDRMVNSNLAS 306 (365)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHTTCCCEEEEEECCCSSCSSTTCCSCSSSCHHHHHHHHHHHCHHHHHHHHHHHTTSSC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCC
T ss_conf 99808999999999999999998579998999985458898888987566898999999867999999999998669999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCHHCC-CCCCCHHHHHCCCCC
Q ss_conf 99999999999999999999801049-995211122005999
Q 001713 541 QEDINKIQEKVNRILSEEFVASKDYV-PNRRDWLSAYWSGFK 581 (1021)
Q Consensus 541 ~ee~~~i~~~~~~~l~~a~~~A~~~~-p~~~~~~~~~~~~~~ 581 (1021)
++++++++++++++++++++.|++.+ |++.++++++|.+.+
T Consensus 307 ~~~~~~i~~~~~~~v~~a~~~a~~~p~p~~~~~~~~vy~~~~ 348 (365)
T 2ozl_A 307 VEELKEIDVEVRKEIEDAAQFATADPEPPLEELGYHIYSSDP 348 (365)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCCCCGGGTTCSSSSSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCC
T ss_conf 999999999999999999999973899898999854167997
No 7
>1w85_A Pyruvate dehydrogenase E1 component, alpha subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.11 PDB: 3duf_A* 3dv0_A* 3dva_A* 1w88_A*
Probab=1.00 E-value=1 Score=482.81 Aligned_cols=325 Identities=17% Similarity=0.218 Sum_probs=289.2
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC----CCCCCCHHHHHHH
Q ss_conf 522123235899899999996189999999998999999999999789999999974075144----4785324889999
Q 001713 202 SIGFEYMHISDREKCNWLRDKIETPTPMQYNRQRREVILDRLVWSTQFENFLATKWTTAKRFG----LEGGETLIPGMKE 277 (1021)
Q Consensus 202 ~ig~E~~hi~~~e~~~Wl~~~~E~~~~~~~s~e~~~~il~~m~~ar~fE~~l~~~~~~~Krfg----~eG~Ea~i~gl~~ 277 (1021)
.-.+++++|.|++++ |+.. ...+.+++++++++|+.|+++|.||+++.++++ ++++| ++|||++++|+..
T Consensus 17 ~~~~~~~~~l~~~g~-~~~~----~~~~~l~~e~l~~~y~~M~~~R~fe~~~~~~~~-qgr~g~~~~~~G~Ea~~vg~~~ 90 (368)
T 1w85_A 17 AEQFPTFQILNEEGE-VVNE----EAMPELSDEQLKELMRRMVYTRILDQRSISLNR-QGRLGFYAPTAGQEASQIASHF 90 (368)
T ss_dssp HHTCCEECSBCTTSC-BSCG----GGCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-TTSCCSCCCCTTCHHHHHHHHH
T ss_pred CCCCCEEEEECCCCC-CCCC----CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCCCCCCCCCHHHHHHHHHH
T ss_conf 778883689899888-8785----346899999999999999999999999999862-8843167799998999999999
Q ss_pred HHHHHHHCCCCCEEECCCCCCHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 99997607987399818963179999984099999999982099999987775457887534443347898999840244
Q 001713 278 MFDRAADLGVESIVIGMPHRGRLNVLGNVVRKPLRQIFSEFSGGTRPVDEVGLYTGTGDVKYHLGTSYDRPTRGGKRIHL 357 (1021)
Q Consensus 278 ~l~~~~~~gv~D~vigm~HRgrln~La~v~g~p~~~if~Ef~G~~~~~~~G~~~ggsgDvkyHlg~~~~~~~~~g~~i~l 357 (1021)
+|++ +|++++ +||+|+.++++ |+++..+|+||+|+.. |++ ||. + +
T Consensus 91 ~l~~------~D~v~~-~~R~~~~~~~~--G~~~~~~~~el~G~~~--------G~~----~h~----~----------~ 135 (368)
T 1w85_A 91 ALEK------EDFILP-GYRDVPQIIWH--GLPLYQAFLFSRGHFH--------GNQ----IPE----G----------V 135 (368)
T ss_dssp TCCT------TCEEEC-CSSCHHHHHHT--TCCHHHHHHHHHTCGG--------GGC----CCT----T----------C
T ss_pred HCCC------CCEEEE-CCHHHHHHHHC--CCCHHHHHHHHCCCCC--------CCC----CCC----C----------C
T ss_conf 6687------687873-26618999863--8889999999778987--------889----870----0----------2
Q ss_pred EECCCCCCCCCCCCEEEHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHC---CCCCCCCCCEEEEEECCC
Q ss_conf 22035687666655231377774873099889875799995753347742799999823---999998552899999198
Q 001713 358 SLVANPSHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS---ALPNYSIGGTIHIVVNNQ 434 (1021)
Q Consensus 358 ~l~~npShLg~~~PvA~G~A~A~q~~~~d~~~~~~v~i~~~GDgA~sGqG~v~EalnlA---~LP~y~~GGvI~IV~NNq 434 (1021)
++.+++||+|.++|+|+|+|+|.++.+.+ .++||++|||+++ +|+++|+||+| +|| +||||+||+
T Consensus 136 ~~~~~~g~lG~~lp~AvG~A~A~~~~~~~-----~~vv~i~GDGa~~-~G~~~Eal~~A~~~~lp------vi~vv~NN~ 203 (368)
T 1w85_A 136 NVLPPQIIIGAQYIQAAGVALGLKMRGKK-----AVAITYTGDGGTS-QGDFYEGINFAGAFKAP------AIFVVQNNR 203 (368)
T ss_dssp CBCCCCCSTTHHHHHHHHHHHHHHHTTCS-----CCEEEEEETGGGG-SHHHHHHHHHHHHTTCC------EEEEEEECS
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHCCC-----CEEEEEECHHHHH-HCHHHHHHHHHHHHCCC------EEEEEECCC
T ss_conf 62778664476412889999986862899-----8599997554643-05899999999997829------899998698
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCC-CCCCCC-CCC
Q ss_conf 133348988766526888881449549999189999999999999999880599799997200068987-899999-889
Q 001713 435 VAFTTDPMSGRSSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYRRFGHN-EIDEPS-FTQ 512 (1021)
Q Consensus 435 ig~tT~~~~~rs~~~~sd~aka~g~p~~~VdG~D~~aV~~a~~~A~e~rr~~~~PvlIe~~tYR~~GHn-e~D~p~-ytq 512 (1021)
||++|+...+++.++++++|++||+|+++|||+|+++|+.+++.|++++|++++|+|||++|||++||| ++|+|. ||+
T Consensus 204 ~gi~~~~~~~~~~~d~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~~r~~~gP~lIe~~t~r~~gHs~~~Ddp~~yr~ 283 (368)
T 1w85_A 204 FAISTPVEKQTVAKTLAQKAVAAGIPGIQVDGMDPLAVYAAVKAARERAINGEGPTLIETLCFRYGPHTMSGDDPTRYRS 283 (368)
T ss_dssp EETTEEGGGTCSCSCSGGGGGGTTCCEEEEETTCHHHHHHHHHHHHHHHHTTSCCEEEEEECCCSSCSCSSCC------C
T ss_pred CCCEECCCCCCCCCCHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCCCC
T ss_conf 24044622135888999999987997899768999999999999999987069988999986506887877788445579
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCHHCC-CCCCCHHHHHCCCC
Q ss_conf 898999990999999999999983689999999999999999999999801049-99521112200599
Q 001713 513 PKMYKIIRSHPSSLEIYQNKLLECQHVTQEDINKIQEKVNRILSEEFVASKDYV-PNRRDWLSAYWSGF 580 (1021)
Q Consensus 513 p~~y~~i~~~~dpi~~y~~~Li~~Gi~t~ee~~~i~~~~~~~l~~a~~~A~~~~-p~~~~~~~~~~~~~ 580 (1021)
+.||+.|++ +||+.+|+++|+++|++|++++++++++++++++++++.|++.+ |++.++++++|.+.
T Consensus 284 ~~e~~~~~~-~dPi~~~~~~L~~~g~~~~~~~~~i~~~~~~~v~~a~~~a~~~p~p~~~~~~~~vy~~~ 351 (368)
T 1w85_A 284 KELENEWAK-KDPLVRFRKFLEAKGLWSEEEENNVIEQAKEEIKEAIKKADETPKQKVTDLISIMFEEL 351 (368)
T ss_dssp HHHHHHHHT-TCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHTSCCCCHHHHHHTSCSSC
T ss_pred HHHHHHHHC-CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCC
T ss_conf 899998863-99999999999976998999999999999999999999997389989899985503799
No 8
>2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid, transferase; HET: TDP; 2.40A {Escherichia coli}
Probab=1.00 E-value=1 Score=461.27 Aligned_cols=544 Identities=12% Similarity=0.117 Sum_probs=393.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEE-CCCCCCHHHHHHHHC
Q ss_conf 9999989999999999997899999999740751444785324889999999976079873998-189631799999840
Q 001713 229 MQYNRQRREVILDRLVWSTQFENFLATKWTTAKRFGLEGGETLIPGMKEMFDRAADLGVESIVI-GMPHRGRLNVLGNVV 307 (1021)
Q Consensus 229 ~~~s~e~~~~il~~m~~ar~fE~~l~~~~~~~Krfg~eG~Ea~i~gl~~~l~~~~~~gv~D~vi-gm~HRgrln~La~v~ 307 (1021)
..++.+++.++++.| |.+...+..+ .+|-..+..|++.+.+++...++. .+|+++ ...||+..+.+..
T Consensus 21 ~~l~~~~l~~l~~~i---R~~~~~~~~~-~~Gh~~~~lg~~~~~~~l~~~~~~-----~~D~~v~~~gH~~y~~~~l~-- 89 (621)
T 2o1s_A 21 RLLPKESLPKLCDEL---RRYLLDSVSR-SSGHFASGLGTVELTVALHYVYNT-----PFDQLIWDVGHQAYPHKILT-- 89 (621)
T ss_dssp TTSCGGGHHHHHHHH---HHHHHHHSCG-GGCTHHHHHTTHHHHHHHHHHSCT-----TTSEEEESSSTTCHHHHHTT--
T ss_pred HHCCHHHHHHHHHHH---HHHHHHHHHH-CCCCCCCCHHHHHHHHHHHHCCCC-----CCCEEEEECCHHHHHHHHHH--
T ss_conf 538999999999999---9999999861-589867871178999999840589-----98879984726999999982--
Q ss_pred CCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCEEEHHHHHHHHHCCCC
Q ss_conf 99999999982099999987775457887534443347898999840244220356876666552313777748730998
Q 001713 308 RKPLRQIFSEFSGGTRPVDEVGLYTGTGDVKYHLGTSYDRPTRGGKRIHLSLVANPSHLEAVDPVVIGKTRAKQYYSNDM 387 (1021)
Q Consensus 308 g~p~~~if~Ef~G~~~~~~~G~~~ggsgDvkyHlg~~~~~~~~~g~~i~l~l~~npShLg~~~PvA~G~A~A~q~~~~d~ 387 (1021)
|. .++ |..+.. ++|. ..|. +.. ..+. .....+|+|.++|.|+|+|+|.++++.+
T Consensus 90 G~-~~~-~~~~r~----------~~g~---~g~~--~~~-~s~~-------~~~~~G~~G~gl~~A~G~AlA~~~~~~~- 143 (621)
T 2o1s_A 90 GR-RDK-IGTIRQ----------KGGL---HPFP--WRG-ESEY-------DVLSVGHSSTSISAGIGIAVAAEKEGKN- 143 (621)
T ss_dssp TT-GGG-GGGTTS----------TTSC---CSSC--CTT-TCTT-------CCSCCSSSSCHHHHHHHHHHHHHHHTSC-
T ss_pred CC-HHH-HHCCCC----------CCCC---CCCC--CCC-CCCC-------CCCCCCCCCHHHHHHHHHHHHHHHHCCC-
T ss_conf 87-756-626302----------5997---8899--998-8998-------7558756202788999999999974999-
Q ss_pred CCCCCEEEEEECCCCCCCCCHHHHHHHHC---CCCCCCCCCEEEEEECCCCCCCCCCCCCCCC-----------------
Q ss_conf 89875799995753347742799999823---9999985528999991981333489887665-----------------
Q 001713 388 DRTKNMAVLIHGDGSFAGQGVVYETLHLS---ALPNYSIGGTIHIVVNNQVAFTTDPMSGRSS----------------- 447 (1021)
Q Consensus 388 ~~~~~v~i~~~GDgA~sGqG~v~EalnlA---~LP~y~~GGvI~IV~NNqig~tT~~~~~rs~----------------- 447 (1021)
..++|+.|||+++ +|.++|+||+| ++| +|+||.||+|+++++...+...
T Consensus 144 ----~~Vv~v~GDG~~~-~G~~~EaL~~A~~~~~p------li~vvnnN~~~i~~~~~~~~~~~~~~~~~~~y~~~~~~~ 212 (621)
T 2o1s_A 144 ----RRTVCVIGDGAIT-AGMAFEAMNHAGDIRPD------MLVILNDNEMSISENVGALNNHLAQLLSGKLYSSLREGG 212 (621)
T ss_dssp ----CCEEEEEETTGGG-SHHHHHHHHHHHHHCCS------EEEEEEECC------------------------------
T ss_pred ----CEEEEEECHHHHH-CCHHHHHHHHHHHHCCC------EEEEEECCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHH
T ss_conf ----8599997313421-31999999997751899------899996799504787315778777654020278889989
Q ss_pred C------------------------CHHHHHHHCCCCEE-EEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCC
Q ss_conf 2------------------------68888814495499-9918999999999999999988059979999720006898
Q 001713 448 Q------------------------YCTDVAKALDAPIF-HVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYRRFGH 502 (1021)
Q Consensus 448 ~------------------------~~sd~aka~g~p~~-~VdG~D~~aV~~a~~~A~e~rr~~~~PvlIe~~tYR~~GH 502 (1021)
. ....++++||+.++ .|||+|++++..+++.|.+ .++|++|++.|+|.+||
T Consensus 213 ~~~~~~~p~~~~~~~r~~~~~~~~~~p~~~~ea~G~~~~g~vdG~d~~~l~~al~~A~~----~~gP~lI~v~t~kg~G~ 288 (621)
T 2o1s_A 213 KKVFSGVPPIKELLKRTEEHIKGMVVPGTLFEELGFNYIGPVDGHDVLGLITTLKNMRD----LKGPQFLHIMTKKGRGY 288 (621)
T ss_dssp --------------------------CHHHHHHTTCEEEEEEETTCHHHHHHHHHHHHH----SCSEEEEEEECCCTTCC
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHH----CCCCEEEEEEEECCCCC
T ss_conf 88874162377888888887664157235899779958520588799999999999887----18998999998616478
Q ss_pred CCCCCCCCCCHHHHHHHHHCCCH-HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCHHCCCCCCCHHHHHCCCCC
Q ss_conf 78999998898989999909999-99999999983689999999999999999999999801049995211122005999
Q 001713 503 NEIDEPSFTQPKMYKIIRSHPSS-LEIYQNKLLECQHVTQEDINKIQEKVNRILSEEFVASKDYVPNRRDWLSAYWSGFK 581 (1021)
Q Consensus 503 ne~D~p~ytqp~~y~~i~~~~dp-i~~y~~~Li~~Gi~t~ee~~~i~~~~~~~l~~a~~~A~~~~p~~~~~~~~~~~~~~ 581 (1021)
+...+. | ..| |..+ ...
T Consensus 289 ~~~e~~----~---~~~--H~~~~f~~----------------------------------------------------- 306 (621)
T 2o1s_A 289 EPAEKD----P---ITF--HAVPKFDP----------------------------------------------------- 306 (621)
T ss_dssp CCC-----------------------------------------------------------------------------
T ss_pred CHHHCC----C---HHC--CCCCCCCC-----------------------------------------------------
T ss_conf 812429----1---311--57778787-----------------------------------------------------
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCEEEECC
Q ss_conf 93000125899987689999987660389998763104999999999862398768899999999998834981999733
Q 001713 582 SPEQLSRIRNTGVKPEILKNVGKAITTLPENFKPHRGVKKVYELRAQMIETGEGIDWALGEALAFATLLVEGNHVRLSGQ 661 (1021)
Q Consensus 582 ~~~~~~~~~~t~v~~~~l~~i~~~~~~~P~~f~~h~~l~~~~~~R~~~~~~~~~idw~~ae~lA~~~ll~~~~~Vrl~Gq 661 (1021)
+++... + .......|..+.+.++..++.++++|.+.++
T Consensus 307 ---------~~~~~~-----------------------------~----~~~~~~~~~~~~~~~l~~~~~~d~~v~~~~~ 344 (621)
T 2o1s_A 307 ---------SSGCLP-----------------------------K----SSGGLPSYSKIFGDWLCETAAKDNKLMAITP 344 (621)
T ss_dssp -----------------------------------------------------CCBHHHHHHHHHHHHHHHCTTEEEEES
T ss_pred ---------CCCCCC-----------------------------C----CCCCHHHHHHHHHHHHHHHHHHCCCEEEEEC
T ss_conf ---------767555-----------------------------6----6534088999999999998846839999928
Q ss_pred CCCCCCCCCCCCEECCCCCCCEECCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHHHH
Q ss_conf 47985223311200027767411147886335677662875576346789889873116799730371143330585489
Q 001713 662 DVERGTFSHRHSVLHDQETGEQYCPLDHVMMNQDAEMFTVSNSSLSEFGVLGFELGYSMENPNSLVMWEAQFGDFANGAQ 741 (1021)
Q Consensus 662 Dv~rGtF~~RHav~~dq~t~~~y~pL~~l~~~~~~g~~rV~nspLSE~~vlGfe~G~s~~g~~~lviwEaqFgDF~n~Aq 741 (1021)
|+..| ++. .++. ++| +.|++|++|||.+++|+++|+|+.|.+|++ +. |++|++.|
T Consensus 345 d~~~~-~~~-----------------~~~~--~~~-~~r~~~~gIaE~~~~~~a~G~A~~G~rp~~--~~-~~~F~~~a- 399 (621)
T 2o1s_A 345 AMREG-SGM-----------------VEFS--RKF-PDRYFDVAIAEQHAVTFAAGLAIGGYKPIV--AI-YSTFLQRA- 399 (621)
T ss_dssp SCTTT-TTC-----------------HHHH--HHC-TTTEEECCSCHHHHHHHHHHHHHTTCEEEE--EE-ETTGGGGG-
T ss_pred CCCCC-CCH-----------------HHHH--HHC-CCCEEECCCCHHHHHHHHHHHHHCCCEEEE--EE-HHHHHHHH-
T ss_conf 66688-675-----------------8999--757-973683576779999999999977998999--86-37699999-
Q ss_pred HHHHHHHHHHHHHHCCCCCEEEEECC-CCCC-CCCCCCCCHHHHHHHCCCCCCCCCCCCCCHHHHCCCCCCEEEEECCCH
Q ss_conf 99999996464440586662999195-5799-996776862667641048999864578830110025558099963997
Q 001713 742 VIFDQFVNSGESKWLRQSGLVVMLPH-GYDG-QGPEHSSARLERFLQMSDDNPYVIPEMDSTLRTQIQECNWQIVNVTTP 819 (1021)
Q Consensus 742 ~iiDqfi~~~~~kw~~~~~lV~~lPh-G~~G-~GpeHSs~r~Er~Lql~~e~~~~~~~~pg~~~~~~~~~Nl~V~~pstp 819 (1021)
+||++.... ....|+|++++| |+.| .||+||+.-..++ +.++|+ |+|+.|++|
T Consensus 400 --~dqi~~~~a---~~~~pvv~~~~~~g~~g~~G~tH~~~~d~~~----------~~~iP~----------l~v~~P~d~ 454 (621)
T 2o1s_A 400 --YDQVLHDVA---IQKLPVLFAIDRAGIVGADGQTHQGAFDLSY----------LRCIPE----------MVIMTPSDE 454 (621)
T ss_dssp --HHHHHHTTT---TTTCCCEEEEESCBCCCTTCGGGCBCSHHHH----------TTTSTT----------CEEECCSSH
T ss_pred --HHHHHHHHH---HCCCCEEEEEECCCCCCCCCCCCCCHHHHHH----------HHCCCC----------CEEEECCCH
T ss_conf --999999998---5599979999798517899876376699999----------963899----------889955999
Q ss_pred HHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCEEEEEEE
Q ss_conf 89999999998607998199992054548866668866665457999888889860572048665555779980999950
Q 001713 820 ANYFHVLRRQIHREFRKPLVVMSPKNLLRHKECKSNLSEFDDVQGHPGFDKQGTRFKRLIKDQNEHSDLEEGIRRLILCS 899 (1021)
Q Consensus 820 ad~fhlLrrqi~~~~~~Pliv~~pK~Llr~~~~~s~~~e~~~~~~~~~~~~~~~~f~~vi~~~~~~~~~~~g~~~~Iv~~ 899 (1021)
.+++++|+.++.. .++|++|++||..+... ..+...++. .+++.+.++|.|++|||+
T Consensus 455 ~e~~~~l~~a~~~-~~~Pv~i~~~r~~~~~~-~~~~~~~~~---------------------~G~~~~~~~g~dv~iva~ 511 (621)
T 2o1s_A 455 NECRQMLYTGYHY-NDGPSAVRYPRGNAVGV-ELTPLEKLP---------------------IGKGIVKRRGEKLAILNF 511 (621)
T ss_dssp HHHHHHHHHHHHC-CSSCEEEECCSSBCCCC-CCCCCCCCC---------------------TTCCEEEECCSSEEEEEE
T ss_pred HHHHHHHHHHHHC-CCCCEEEEECCCCCCCC-CCCCCCCCC---------------------CCCEEEEECCCCEEEEEE
T ss_conf 9999999999973-89978999578877787-778656445---------------------896699622898999993
Q ss_pred CHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 54699999999973999299998044479998999999972999608998338865641752999999987751049999
Q 001713 900 GKVYYELYEERKKHSASDIAICRVEQLCPFPYDLVQRELKRYPNAEVVWSQEEPMNMGAYTYIAPRLCTAMKAVDRGTME 979 (1021)
Q Consensus 900 G~~~~~l~~a~~~~~~~~v~ii~le~L~Pfp~~~i~~~v~k~~~~~~vwvqEe~~n~G~~~~i~~~i~~~~~~l~~~~~~ 979 (1021)
|.+++.++++ + ++++++||++++|+|||.++|.+++++++++ |||+|....+|.+++|...+.+.. + ..
T Consensus 512 G~~~~~a~~A-~--~Gi~v~Vi~~~~~~P~d~~~i~~~~~~~~~v--v~vEe~~~~gg~g~~v~~~l~~~~--~----~~ 580 (621)
T 2o1s_A 512 GTLMPEAAKV-A--ESLNATLVDMRFVKPLDEALILEMAASHEAL--VTVEENAIMGGAGSGVNEVLMAHR--K----PV 580 (621)
T ss_dssp STTHHHHHHH-H--HHHTCEEEECCEEESCCHHHHHHHHHHCSEE--EEEEEEESTTSHHHHHHHHHHHTT--C----CC
T ss_pred CHHHHHHHHH-C--CCCCEEEEECCCCCCCCHHHHHHHHCCCCEE--EEEECCCCCCCHHHHHHHHHHHCC--C----CC
T ss_conf 6899999997-0--7998799966825888899999997259969--999899878879999999998618--9----99
Q ss_pred CEEEECCCCCCCCCCC---CHHHHHHHHHHHHHHHC
Q ss_conf 6799827999679955---08989899999999940
Q 001713 980 DIKYVGRAPSAASATG---FYQVHVKEQSELMQKAI 1012 (1021)
Q Consensus 980 ~~~~vgr~~~~~pa~g---~~~~h~~e~~~i~~~a~ 1012 (1021)
+++++|.++...|... +.+.+....+.|++++.
T Consensus 581 ~v~~ig~~d~f~~~g~~~~l~~~~g~~~~~I~~~i~ 616 (621)
T 2o1s_A 581 PVLNIGLPDFFIPQGTQEEMRAELGLDAAGMEAKIK 616 (621)
T ss_dssp CEEEEEECSSCCCCSCHHHHHHHTTCSHHHHHHHHH
T ss_pred CEEEEECCCCCCCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 759995398088879999999997919999999999
No 9
>1umd_A E1-alpha, 2-OXO acid dehydrogenase alpha subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.11 PDB: 1um9_A* 1umc_A* 1umb_A*
Probab=1.00 E-value=1 Score=457.00 Aligned_cols=333 Identities=17% Similarity=0.195 Sum_probs=298.3
Q ss_pred CCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC---CCCCCCCCHHHHHHHHH
Q ss_conf 221232358998999999961899999999989999999999997899999999740751---44478532488999999
Q 001713 203 IGFEYMHISDREKCNWLRDKIETPTPMQYNRQRREVILDRLVWSTQFENFLATKWTTAKR---FGLEGGETLIPGMKEMF 279 (1021)
Q Consensus 203 ig~E~~hi~~~e~~~Wl~~~~E~~~~~~~s~e~~~~il~~m~~ar~fE~~l~~~~~~~Kr---fg~eG~Ea~i~gl~~~l 279 (1021)
..+++++|.|++++ |+.. ..+.+++++++++|+.|+++|.||.++..++++|+. +++.|+|++++++..++
T Consensus 11 ~~~~~~~~l~~~g~-~~~~-----~~~~l~~~~l~~l~~~m~~~R~~~~~~~~~~~~G~~g~~~~~~G~ea~~~~~~~~l 84 (367)
T 1umd_A 11 FTEEPIRLIGEEGE-WLGD-----FPLDLEGEKLRRLYRDMLAARMLDERYTILIRTGKTSFIAPAAGHEAAQVAIAHAI 84 (367)
T ss_dssp SCSSCBCCBCTTSC-BCCS-----SCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSCCCCCTTCHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCC-CCCC-----CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHC
T ss_conf 88872789899888-8875-----67999999999999999999999999999962798647778758999999999972
Q ss_pred HHHHHCCCC-CEEECCCCCCHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 997607987-3998189631799999840999999999820999999877754578875344433478989998402442
Q 001713 280 DRAADLGVE-SIVIGMPHRGRLNVLGNVVRKPLRQIFSEFSGGTRPVDEVGLYTGTGDVKYHLGTSYDRPTRGGKRIHLS 358 (1021)
Q Consensus 280 ~~~~~~gv~-D~vigm~HRgrln~La~v~g~p~~~if~Ef~G~~~~~~~G~~~ggsgDvkyHlg~~~~~~~~~g~~i~l~ 358 (1021)
++ + |+++ ++||+++..+++ |+++.++|++|.|+.++++.| +++++|++ +.+. +
T Consensus 85 ~~------~rD~i~-~s~r~~~~~~~~--G~~~~~~l~~~~g~~~g~~~G------~~~~~h~~-~~~~----------~ 138 (367)
T 1umd_A 85 RP------GFDWVF-PYYRDHGLALAL--GIPLKELLGQMLATKADPNKG------RQMPEHPG-SKAL----------N 138 (367)
T ss_dssp CT------TTSEEE-CCTTTHHHHHHH--TCCHHHHHHHHHTBTTCTTTT------CSCSSCCC-BTTT----------T
T ss_pred CC------CCCEEE-ECCHHHHHHHHC--CCCHHHHHHHHHCCCCCCCCC------CCCCCCCC-CCCC----------C
T ss_conf 99------985899-684789999973--989999999971888888889------99877776-6313----------7
Q ss_pred ECCCCCCCCCCCCEEEHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHC---CCCCCCCCCEEEEEECCCC
Q ss_conf 2035687666655231377774873099889875799995753347742799999823---9999985528999991981
Q 001713 359 LVANPSHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS---ALPNYSIGGTIHIVVNNQV 435 (1021)
Q Consensus 359 l~~npShLg~~~PvA~G~A~A~q~~~~d~~~~~~v~i~~~GDgA~sGqG~v~EalnlA---~LP~y~~GGvI~IV~NNqi 435 (1021)
+.+++||+|+++|+|+|+|+|.++.+.+ .++||++|||+++ +|+++|+||+| +|| +||||.||+|
T Consensus 139 ~~~~~g~lG~~l~~a~G~A~a~k~~~~~-----~~vv~i~GDGa~~-~G~~~Eal~~A~~~~lp------vi~vv~NN~~ 206 (367)
T 1umd_A 139 FFTVASPIASHVPPAAGAAISMKLLRTG-----QVAVCTFGDGATS-EGDWYAGINFAAVQGAP------AVFIAENNFY 206 (367)
T ss_dssp BCCCCSSTTTTHHHHHHHHHHHHHTTCC-----CCEEEEEETGGGG-SHHHHHHHHHHHHTTCS------EEEEEEECSE
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHCCC-----CEEEEEECCCCCC-CCCHHHHHHHHHHHCCC------EEEEEECCCE
T ss_conf 0777735644350899999999985899-----8699997555213-37489999999996859------7999962885
Q ss_pred CCCCCCCCCCCCCCHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCC-CCCHH
Q ss_conf 33348988766526888881449549999189999999999999999880599799997200068987899999-88989
Q 001713 436 AFTTDPMSGRSSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYRRFGHNEIDEPS-FTQPK 514 (1021)
Q Consensus 436 g~tT~~~~~rs~~~~sd~aka~g~p~~~VdG~D~~aV~~a~~~A~e~rr~~~~PvlIe~~tYR~~GHne~D~p~-ytqp~ 514 (1021)
|++|+...+++..++++++++||+|+++|||+|+++|+.+++.|+++++++++|++|+++|||.+|||++|+|+ ||++.
T Consensus 207 gi~~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~d~~av~~a~~~A~~~a~~~~gP~lIe~~t~r~~Ghs~~D~~~~Yr~~~ 286 (367)
T 1umd_A 207 AISVDYRHQTHSPTIADKAHAFGIPGYLVDGMDVLASYYVVKEAVERARRGEGPSLVELRVYRYGPHSSADDDSRYRPKE 286 (367)
T ss_dssp ETTEEHHHHCSSSCSGGGGGGTTSCEEEEETTCHHHHHHHHHHHHHHHHTTCCCEEEEEECCCCSCSSTTCCGGGTSCHH
T ss_pred EECCCHHHCCCCCCHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCCCHH
T ss_conf 20137543268889999998859868996899999999999999999996599889999865689988899865668989
Q ss_pred HHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCHHCC-CCCCCHHHHHCCCC
Q ss_conf 8999990999999999999983689999999999999999999999801049-99521112200599
Q 001713 515 MYKIIRSHPSSLEIYQNKLLECQHVTQEDINKIQEKVNRILSEEFVASKDYV-PNRRDWLSAYWSGF 580 (1021)
Q Consensus 515 ~y~~i~~~~dpi~~y~~~Li~~Gi~t~ee~~~i~~~~~~~l~~a~~~A~~~~-p~~~~~~~~~~~~~ 580 (1021)
|++.|++ +||+.+|+++|+++|++|++++++++++++++++++++.|++.+ |++.++++++|.+.
T Consensus 287 e~~~~~~-~dPi~~~~~~L~~~g~~~~~~~~~i~~~~~~~v~~a~~~a~~~~~p~~~~~~~~vy~~~ 352 (367)
T 1umd_A 287 EVAFWRK-KDPIPRFRRFLEARGLWNEEWEEDVREEIRAELERGLKEAEEAGPVPPEWMFEDVFAEK 352 (367)
T ss_dssp HHHHHHT-TCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCBCCGGGGGTTSSSSC
T ss_pred HHHHHHC-CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCC
T ss_conf 9999872-99999999999967999999999999999999999999998389999899986521799
No 10
>3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A*
Probab=1.00 E-value=1 Score=448.23 Aligned_cols=479 Identities=12% Similarity=0.147 Sum_probs=353.7
Q ss_pred CCCCCCCCCCEEEHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHC---CCCCCCCCCEEEEEECCCCCCC
Q ss_conf 5687666655231377774873099889875799995753347742799999823---9999985528999991981333
Q 001713 362 NPSHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS---ALPNYSIGGTIHIVVNNQVAFT 438 (1021)
Q Consensus 362 npShLg~~~PvA~G~A~A~q~~~~d~~~~~~v~i~~~GDgA~sGqG~v~EalnlA---~LP~y~~GGvI~IV~NNqig~t 438 (1021)
..+|+|.++|.|+|+|+|.++.+.+ +..++|++|||+++ +|.++|+||+| +||. +|+|+.||+|+++
T Consensus 119 ~~G~lG~gl~~A~G~AlA~~~~~~~----~~~vv~v~GDG~~~-eG~~~Eal~~A~~~~l~~-----livi~nnN~~~i~ 188 (616)
T 3mos_A 119 ATGSLGQGLGAACGMAYTGKYFDKA----SYRVYCLLGDGELS-EGSVWEAMAFASIYKLDN-----LVAILDINRLGQS 188 (616)
T ss_dssp CCCSTTCHHHHHHHHHHHHHHTSCC----SCCEEEEEETGGGG-SHHHHHHHHHHHHTTCTT-----EEEEEEECSBCSS
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCC----CCEEEEEECCCCCC-CCCHHHHHHHHHHCCCCC-----EEEEEECCCCCCC
T ss_conf 6625577427999999989973899----98799998860004-171899999999819995-----8999978998776
Q ss_pred CCCCCCCCCCCHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCCCHHHHHH
Q ss_conf 48988766526888881449549999189999999999999999880599799997200068987899999889898999
Q 001713 439 TDPMSGRSSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYRRFGHNEIDEPSFTQPKMYKI 518 (1021)
Q Consensus 439 T~~~~~rs~~~~sd~aka~g~p~~~VdG~D~~aV~~a~~~A~e~rr~~~~PvlIe~~tYR~~GHne~D~p~ytqp~~y~~ 518 (1021)
++.....+..++.+++++||+++++|||+|++++..+++.+ .++|++|++.|+|.+||+..+++. .
T Consensus 189 ~~~~~~~~~~~~~~~~~a~G~~~~~VdG~d~~~l~~al~~~------~~~P~lI~v~T~kg~G~~~~e~~~--------~ 254 (616)
T 3mos_A 189 DPAPLQHQMDIYQKRCEAFGWHAIIVDGHSVEELCKAFGQA------KHQPTAIIAKTFKGRGITGVEDKE--------S 254 (616)
T ss_dssp SBCTTTTCHHHHHHHHHHTTCEEEEEETTCHHHHHHHHHSC------CSSCEEEEEECCTTTTSTTTTTCS--------S
T ss_pred CCCCCCCCHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHC------CCCCEEEEEEEECCCCCCCCCCCH--------H
T ss_conf 78011357177999999769738997689999999999964------799889999974464666000863--------1
Q ss_pred HHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCHHCCCC--CCCHHHHHCCCCCCCCCCCCCCCCCCCH
Q ss_conf 99099999999999998368999999999999999999999980104999--5211122005999930001258999876
Q 001713 519 IRSHPSSLEIYQNKLLECQHVTQEDINKIQEKVNRILSEEFVASKDYVPN--RRDWLSAYWSGFKSPEQLSRIRNTGVKP 596 (1021)
Q Consensus 519 i~~~~dpi~~y~~~Li~~Gi~t~ee~~~i~~~~~~~l~~a~~~A~~~~p~--~~~~~~~~~~~~~~~~~~~~~~~t~v~~ 596 (1021)
| |..| +++++++++.+++...+++ .+...|. +.......+ . ..
T Consensus 255 ~--Hg~~-------------~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~-------------~-~~-- 299 (616)
T 3mos_A 255 W--HGKP-------------LPKNMAEQIIQEIYSQIQS----KKKILATPPQEDAPSVDI-------------A-NI-- 299 (616)
T ss_dssp C--TTCC-------------CCHHHHHHHHHHHHHTCCC----CCCCCCBCCCCCCCCCCC-------------S-CC--
T ss_pred H--CCCC-------------CCHHHHHHHHHHHHHHHHH----HHHHCCCCCCHHHHHHHH-------------H-CC--
T ss_conf 2--2899-------------9989999999999999985----554076766101024432-------------1-13--
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCEEC
Q ss_conf 89999987660389998763104999999999862398768899999999998834981999733479852233112000
Q 001713 597 EILKNVGKAITTLPENFKPHRGVKKVYELRAQMIETGEGIDWALGEALAFATLLVEGNHVRLSGQDVERGTFSHRHSVLH 676 (1021)
Q Consensus 597 ~~l~~i~~~~~~~P~~f~~h~~l~~~~~~R~~~~~~~~~idw~~ae~lA~~~ll~~~~~Vrl~GqDv~rGtF~~RHav~~ 676 (1021)
.+. .++.| ..++++.+..|...++..++.++++|++.|+|+..|+|.
T Consensus 300 --------~~~-~~~~~-----------------~~~~~~a~r~a~~~~L~~l~~~d~~vv~~~aD~~~~~~~------- 346 (616)
T 3mos_A 300 --------RMP-SLPSY-----------------KVGDKIATRKAYGQALAKLGHASDRIIALDGDTKNSTFS------- 346 (616)
T ss_dssp --------CCS-SCCCC-----------------CTTCBCCHHHHHHHHHHHHHHHCTTEEEEESSCHHHHSH-------
T ss_pred --------CCC-CCCCC-----------------CCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCH-------
T ss_conf --------567-87545-----------------554426999999999999996699889994876787444-------
Q ss_pred CCCCCCEECCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 27767411147886335677662875576346789889873116799730371143330585489999999964644405
Q 001713 677 DQETGEQYCPLDHVMMNQDAEMFTVSNSSLSEFGVLGFELGYSMENPNSLVMWEAQFGDFANGAQVIFDQFVNSGESKWL 756 (1021)
Q Consensus 677 dq~t~~~y~pL~~l~~~~~~g~~rV~nspLSE~~vlGfe~G~s~~g~~~lviwEaqFgDF~n~Aq~iiDqfi~~~~~kw~ 756 (1021)
..+. ++| +.|++|+||||.+++|+++|+|+.|.++ .+++||++|++.| +||+...+ .
T Consensus 347 -----------~~~~--~~~-p~R~~d~gIaE~~~v~~a~G~A~~G~~~--~~~~~f~~Fl~~a---~dqi~~~a--~-- 403 (616)
T 3mos_A 347 -----------EIFK--KEH-PDRFIECYIAEQNMVSIAVGCATRNRTV--PFCSTFAAFFTRA---FDQIRMAA--I-- 403 (616)
T ss_dssp -----------HHHH--HHC-GGGEEECCSCHHHHHHHHHHHHGGGCCE--EEEEEEGGGGGGG---HHHHHHHH--H--
T ss_pred -----------HHHH--HHC-CCCEEECCCCHHHHHHHHHHHHHCCCCC--EEEEEHHHHHHHH---HHHHHHHH--H--
T ss_conf -----------6688--768-9976875704899999999999769998--7998469899999---99999999--8--
Q ss_pred CCCCEEEEECC-CC-CC-CCCCCCCCHHHHHHHCCCCCCCCCCCCCCHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHCC
Q ss_conf 86662999195-57-99-99677686266764104899986457883011002555809996399789999999998607
Q 001713 757 RQSGLVVMLPH-GY-DG-QGPEHSSARLERFLQMSDDNPYVIPEMDSTLRTQIQECNWQIVNVTTPANYFHVLRRQIHRE 833 (1021)
Q Consensus 757 ~~~~lV~~lPh-G~-~G-~GpeHSs~r~Er~Lql~~e~~~~~~~~pg~~~~~~~~~Nl~V~~pstpad~fhlLrrqi~~~ 833 (1021)
...++++...| |. .| .||+|++.-.+++ +.++|+ |+|+.|++|.+++++++.++..
T Consensus 404 ~~~~v~~v~~~~g~~~G~dG~tH~~~ed~a~----------l~~iP~----------l~V~~P~d~~e~~~~l~~a~~~- 462 (616)
T 3mos_A 404 SESNINLCGSHCGVSIGEDGPSQMALEDLAM----------FRSVPT----------STVFYPSDGVATEKAVELAANT- 462 (616)
T ss_dssp TTCCEEEEEESBSGGGCTTCGGGCBSSHHHH----------HHTSTT----------EEEECCCSHHHHHHHHHHHHTC-
T ss_pred HCCCEEEEEECCCCCCCCCCCCCCCHHHHHH----------HCCCCC----------CEEEECCCHHHHHHHHHHHHHC-
T ss_conf 5899699997987565589886267778998----------657889----------7899429999999999999865-
Q ss_pred CCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCE--EEEEEECHHHHHHHHHHH
Q ss_conf 998199992054548866668866665457999888889860572048665555779980--999950546999999999
Q 001713 834 FRKPLVVMSPKNLLRHKECKSNLSEFDDVQGHPGFDKQGTRFKRLIKDQNEHSDLEEGIR--RLILCSGKVYYELYEERK 911 (1021)
Q Consensus 834 ~~~Pliv~~pK~Llr~~~~~s~~~e~~~~~~~~~~~~~~~~f~~vi~~~~~~~~~~~g~~--~~Iv~~G~~~~~l~~a~~ 911 (1021)
+.|+++..++.-. |....+..++. .+++.+.++|.| ++|||+|.+++.++++++
T Consensus 463 -~gp~~ir~~r~~~--p~~~~~~~~~~---------------------~Gka~vl~eg~d~dv~iva~G~~v~~al~Aa~ 518 (616)
T 3mos_A 463 -KGICFIRTSRPEN--AIIYNNNEDFQ---------------------VGQAKVVLKSKDDQVTVIGAGVTLHEALAAAE 518 (616)
T ss_dssp -CSEEEEECCSSCC--BCCSCTTCCCC---------------------TTCCEEEECCSSEEEEEECCTHHHHHHHHHHH
T ss_pred -CCCEEEEEECCCC--CCCCCCCCCCC---------------------CCEEEEEEECCCCCEEEEEECHHHHHHHHHHH
T ss_conf -8988999868999--73578865433---------------------78279999579887899995778999999999
Q ss_pred HC--CCCCEEEEEECCCCCCCHHHHHHHHHCC-CCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEECCCC
Q ss_conf 73--9992999980444799989999999729-99608998338865641752999999987751049999679982799
Q 001713 912 KH--SASDIAICRVEQLCPFPYDLVQRELKRY-PNAEVVWSQEEPMNMGAYTYIAPRLCTAMKAVDRGTMEDIKYVGRAP 988 (1021)
Q Consensus 912 ~~--~~~~v~ii~le~L~Pfp~~~i~~~v~k~-~~~~~vwvqEe~~n~G~~~~i~~~i~~~~~~l~~~~~~~~~~vgr~~ 988 (1021)
++ ++++++|||+++|+|||.++|.++++|| +++ |+|+|...++|++++|+..+.+.. ..+++++|.++
T Consensus 519 ~L~~~Gi~v~Vidlr~l~PlD~e~i~~~~~~~~~~v--vvvEe~~~~GG~G~~v~~~l~~~~-------~~~v~~~g~~~ 589 (616)
T 3mos_A 519 LLKKEKINIRVLDPFTIKPLDRKLILDSARATKGRI--LTVEDHYYEGGIGEAVSSAVVGEP-------GITVTHLAVNR 589 (616)
T ss_dssp HHHTTTCEEEEEECSEEESCCHHHHHHHHHHTTTEE--EEEEEEESTTSHHHHHHHHHTTCT-------TCEEEEEEECS
T ss_pred HHHHCCCCEEEEEECCCCCCCHHHHHHHHHHCCCEE--EEECCCCCCCCHHHHHHHHHHHCC-------CCCEEEEECCC
T ss_conf 998569977999957167789999999998559879--998289777688999999998617-------99879994798
Q ss_pred CCCCCCCCH----HHHHHHHHHHHHHH
Q ss_conf 967995508----98989999999994
Q 001713 989 SAASATGFY----QVHVKEQSELMQKA 1011 (1021)
Q Consensus 989 ~~~pa~g~~----~~h~~e~~~i~~~a 1011 (1021)
.+ ..|.. ..+-...+.|++++
T Consensus 590 f~--~~g~~~~l~~~~gl~~~~I~~~i 614 (616)
T 3mos_A 590 VP--RSGKPAELLKMFGIDRDAIAQAV 614 (616)
T ss_dssp CC--CCSCHHHHHHHTTCSHHHHHHHH
T ss_pred CC--CCCCHHHHHHHHCCCHHHHHHHH
T ss_conf 78--98999999999792999999997
Done!