Query 001718
Match_columns 1021
No_of_seqs 502 out of 2635
Neff 6.4
Searched_HMMs 29240
Date Tue Mar 26 17:18:57 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001718.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1013-1017//hhsearch_pdb/001718hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2wjy_A Regulator of nonsense t 1.0 1 1 1191.6 58.7 694 138-836 2-800 (800)
2 2xzl_A ATP-dependent helicase 1.0 1 1 1179.5 56.6 693 136-835 5-801 (802)
3 2gk6_A Regulator of nonsense t 1.0 1 1 811.0 48.7 603 230-836 20-624 (624)
4 4b3f_X DNA-binding protein smu 1.0 1 1 737.8 46.4 559 247-823 45-637 (646)
5 3e1s_A Exodeoxyribonuclease V, 1.0 1 1 290.3 14.9 291 389-802 188-545 (574)
6 3lfu_A DNA helicase II; SF1 he 1.0 1 1 289.9 14.8 314 389-732 8-370 (647)
7 1pjr_A PCRA; DNA repair, DNA r 1.0 1 1 282.2 8.4 307 389-730 10-372 (724)
8 1w36_D RECD, exodeoxyribonucle 1.0 1 1 270.9 12.2 348 392-800 151-585 (608)
9 1uaa_A REP helicase, protein ( 1.0 1 1 266.3 14.2 299 390-723 2-356 (673)
10 3upu_A ATP-dependent DNA helic 1.0 1 1 261.0 7.8 304 387-795 22-459 (459)
No 1
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=1.00 E-value=1 Score=1191.61 Aligned_cols=694 Identities=73% Similarity=1.248 Sum_probs=632.9
Q ss_pred CCCCCCCCCCCCCCCCCCEEECCCCCCCCEEECCCCCCCCCHHHHHHHHCCCCEEEECCCCCCCCCCEEEECCCCCCCCC
Q ss_conf 67883333555877988227719787582331799999753143556341444043068999974310000135663211
Q 001718 138 ADFTEHACRYCGVSNPACVVRCNVPSCRKWFCNSRGNTSGSHIVNHLVRAKHKEVCLHKDSPLGETILECYNCGCRNVFL 217 (1021)
Q Consensus 138 ~~~~~~~c~yc~~~~~~~~~~c~~~~~~~~fcn~~~~~~~shi~~~l~~~~~~~~~~h~~~~~~~~~~~cy~~~~~n~f~ 217 (1021)
+++|+|||+|||||+|+|||+|++ |+||||||||+|++||||+||||||||||+||+|+|||||+||||+||+||||+
T Consensus 2 ~~~~~~~c~~c~~~~~~~~~~~~~--~~~~fcn~~~~~~~shi~~h~~~~~~~~~~~~~~~~~~~~~~ec~~c~~~n~f~ 79 (800)
T 2wjy_A 2 KDLPIHACSYCGIHDPACVVYCNT--SKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFL 79 (800)
T ss_dssp CCCCTTSCTTTCCCCGGGEEEETT--TTEEEESCCTTSSSCHHHHHHHHHTCCCEEECTTSTTCSCBCCCTTTCCCCTTT
T ss_pred CCCCCHHCCCCCCCCCCEEEECCC--CCCCCCCCCCCCCCCHHHHHHHHCCCCEEECCCCCCCCCCEEEEECCCCCCEEE
T ss_conf 988700052359999870878078--787612699998613899999871576476278888887357873268873365
Q ss_pred CCCEECCCCCEEEEEECHHHHH----------------------------------------------------------
Q ss_conf 1420014776489970516667----------------------------------------------------------
Q 001718 218 LGFISAKTESVVVLLCREPCLN---------------------------------------------------------- 239 (1021)
Q Consensus 218 lg~~~~~~~~~~~~~~r~~~~~---------------------------------------------------------- 239 (1021)
|||||+|+|+|||||||+||++
T Consensus 80 lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ 159 (800)
T 2wjy_A 80 LGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQQINKLEELWKENP 159 (800)
T ss_dssp CEEEC-----CCEECCTTTTSSTTC----------CEESBCSSSBCTTTSCCCCHHHHHHSCCCCHHHHHHHHHHHTTCT
T ss_pred EECEECCCCCEEEEEECCCCCCCCHHHCCCCCHHHCCCCCCCCCCCHHHCCCCCHHHHHHHCCCCHHHHHHHHHHHCCCC
T ss_conf 30246266866999945821163402114777775661143563418660799979976514799999999898740275
Q ss_pred ---------------------------------------------HHHHCCCCCCEEEEEEECCCCEEEEEEECCCCCCC
Q ss_conf ---------------------------------------------75310464227999970578808999984589887
Q 001718 240 ---------------------------------------------MMKESQSKDNVTIRWDIGLNKKRVAYFVFPKEDNE 274 (1021)
Q Consensus 240 ---------------------------------------------~~~e~~~~~~~~~~~~~~l~~k~~~~~~~~~~~~~ 274 (1021)
.++|++.+.+++++|++++++|.+++|.++..+.+
T Consensus 160 ~~~~~~~~~~~~~~~~~~v~~~y~~~~~Y~~~~~~l~~lE~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (800)
T 2wjy_A 160 SATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSD 239 (800)
T ss_dssp TCCTTC--------CCCCCCSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEECCEEEECTTCCEEEEECCCBCCC-
T ss_pred CCCHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEECCCCCC
T ss_conf 76634443014544546634445999999999999999999761434455422662898772689806899995365578
Q ss_pred CCCCCCCEEEEEECCCCCCCCCEEEEEEEEECC--CCEEEEEECCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHH
Q ss_conf 788999979999679999985059999999137--538999922489997335887149996045639999999999997
Q 001718 275 LRLVPGDELRLRYSGDAAHPAWQSVGHVIKLTA--QEEVALELRASQGVPVDINHGFSVDFVWKSTSFDRMQGAMKTFAV 352 (1021)
Q Consensus 275 ~~~~~GD~v~l~~~~~~~~~~~~~~G~V~~i~~--~~~v~i~l~~~~~~p~~~~~~~~v~~~~~~~s~~R~~~AL~~~~~ 352 (1021)
.+|..||.|.+++.+. ....|.+.|+|+++.+ .++|.+++......|.+....|.++++|++++|+||+.||++++.
T Consensus 240 ~~l~~GD~v~l~~~~~-~~~~~~~~g~V~~v~~~~~~~v~l~~~~~~~~p~~~~~~~~v~~~~~~~~~~r~~~aL~~~~~ 318 (800)
T 2wjy_A 240 MRLMQGDEICLRYKGD-LAPLWKGIGHVIKVPDNYGDEIAIELRSSVGAPVEVTHNFQVDFVWKSTSFDRMQSALKTFAV 318 (800)
T ss_dssp -CCCTTCEEEEEECSS-SSCCEEEEEEEEECSBTTBSCEEEEESCCTTCCTTCCSCEEEEECCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCEEEEEECCC-CCCCCEEEEEEEEECCCCCCEEEEEECCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHH
T ss_conf 8789999899997888-788734589999976788888999982688884003777049996068759999999999987
Q ss_pred HHHCHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHC
Q ss_conf 31001356775214982234432046987779999999999999999997429918998779981779999999999991
Q 001718 353 DETSVSGYIYHHLLGHEVEVQMVRNTLPRRFGAPGLPELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQ 432 (1021)
Q Consensus 353 ~e~~~s~~i~~~llg~~~~~~~~~~~lp~~~~~~~~~~LN~sQ~~AV~~aL~~~l~LIqGPPGTGKT~Tia~iI~~L~~~ 432 (1021)
++..++.++++.++++...+..++..+|..|..+....||++|++||..++..++++|+||||||||+|++.++.++++.
T Consensus 319 ~e~~~~~~l~~~ll~~~~~~~~~~~~l~~~~~~~~~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti~~~i~~l~~~ 398 (800)
T 2wjy_A 319 DETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQ 398 (800)
T ss_dssp CTTSBCHHHHHHHTTCCCCCCCCCCCCCSCCSCTTSCCCCHHHHHHHHHHHTSSEEEEECCTTSCHHHHHHHHHHHHHTT
T ss_pred HHCCHHHHHHHHHCCCCCCCHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf 40011689999851888871332245720036434667799999999874259917998699999899999999999974
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHH
Q ss_conf 99919998294999999999998329848875121100137950133488887411612378898977745432358905
Q 001718 433 GQGQVLVCAPSNVAVDQLAEKISATGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSEKSELHKLQQLKDEQGELSSS 512 (1021)
Q Consensus 433 ~~~kILV~ApSN~AvD~L~erL~~~gl~ivRlg~~sre~i~~~v~~l~l~~~i~~~~~~~~~~L~kl~~lk~e~~~ls~~ 512 (1021)
...+||+|||||+|+|+|.+++...+++++|+++.+++.+..++..+++|..++.... ..++.++.+++++.+.++..
T Consensus 399 ~~~~ilv~a~tn~A~~~l~~~l~~~g~~vvRlg~~~r~~i~~~~~~~tlh~~~~~~~~--~~~l~~l~~~~~~~~~~~~~ 476 (800)
T 2wjy_A 399 GNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFLALHNQIRNMDS--MPELQKLQQLKDETGELSSA 476 (800)
T ss_dssp CSSCEEEEESSHHHHHHHHHHHHTTTCCEEECCCGGGGGCCCTTGGGBHHHHHHTCTT--CHHHHHHHHHHTTTSCCCHH
T ss_pred CCCCEEEECCCHHHHHHHHHHHHHHCCCEEEECCCCHHHHCCHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHHCCCCHH
T ss_conf 8981999869689999999999872754176233214331361556539999972764--99999999998753346867
Q ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCEE
Q ss_conf 89999999999999986126401000233599874468877999977999990454431002686489927866888603
Q 001718 513 DEKKYKALKRATEREISQSADVICCTCVGAGDPRLANFRFRQVLIDESTQATEPECLIPLVLGAKQVVLVGDHCQLGPVI 592 (1021)
Q Consensus 513 ~~k~~~~l~~~~e~~iL~~a~VI~~T~~~a~~~~L~~~~Fd~VIIDEAsQa~E~e~LIpL~~~~kklILVGD~~QLpPvv 592 (1021)
+++.|+.+.+..+.++++.++||++||.+++...+....||+||||||+|++++++|+++...++++||||||+||||++
T Consensus 477 ~~~~~~~~~~~~~~~~l~~a~VI~~T~~~~~~~~l~~~~fd~viIDEAsQ~~e~~~li~l~~~~~~~ilvGD~~QLpPvv 556 (800)
T 2wjy_A 477 DEKRYRALKRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVV 556 (800)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSEEEEETGGGGCTTTTTCCCSEEEETTGGGSCHHHHHHHHTTTBSEEEEEECTTSCCCCC
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEECHHHHCCHHHHCCCCCEEEEECCCCCCCHHHHHHHHHCCCEEEEECCCCCCCCEE
T ss_conf 89999999987777543369899974045287245458989899989778776999999984688599961521379845
Q ss_pred ECHHHHHHCCHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE
Q ss_conf 02879871211889999998299656756742169877776522223583356543112246899988999999949998
Q 001718 593 MCKKAARAGLAQSLFERLVLLGLKPIRLQVQYRMHPSLSEFPSNSFYEGTLQNGVTINERQSSGIDFPWPVPNRPMFFYV 672 (1021)
Q Consensus 593 ~s~~a~~~gl~~SLFeRL~~~g~~~i~L~~qYRmhp~I~~f~S~lFY~g~L~~~~~~~~r~~~~~~~~~p~~~~p~~f~~ 672 (1021)
.+..+...++..|+|+|+...+..+++|++||||||+|++|+|.+||+|+|.++.....+...+..++|+....|++|++
T Consensus 557 ~s~~a~~~gl~~SlFerL~~~g~~~~~L~~qYRm~p~I~~f~n~~fY~g~L~~~~~~~~r~~~~~~~~~~~~~~p~~f~~ 636 (800)
T 2wjy_A 557 MCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQPDKPMFFYV 636 (800)
T ss_dssp CCHHHHHTTTTSCHHHHHHHTTCCCEECCEECSSCHHHHHHHHHHHSTTCCEESSCSGGGSCTTCCCCCSSTTSCEEEEE
T ss_pred CCHHHHHCCCCHHHHHHHHHCCCCCEEEHHHCCCCCHHHHHHHHHHCCCCCCCCCCHHHHCCCCCCCCCCCCCCCEEEEE
T ss_conf 55556555743589999986799954844532888178775189752981546775133101356665668998889998
Q ss_pred ECCCEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHCCCHHHHCCCCEEEEECCCCC
Q ss_conf 07940111567875699999999999999998699999489991250279999999985130224204972994001578
Q 001718 673 QMGQEEISASGTSYLNRTEAANVEKIVTTFLRSGVVPSQIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIEVASVDSFQ 752 (1021)
Q Consensus 673 ~~g~ee~~~~~~S~~N~~EA~~V~~iV~~Ll~~gv~~~dIGIITPY~~Qv~~I~~~L~~~~~l~~~~~~~I~V~TVdsfQ 752 (1021)
+.|.++....+.|+.|..||..|++++..+++.++.+.+|||||||++|+..|++.+...+.+.......|+|+|||+||
T Consensus 637 ~~g~e~~~~~~~S~~N~~Ea~~V~~~v~~L~~~g~~~~dIgVItPy~~Q~~~I~~~L~~~~~~~~~~~~~v~V~TVd~fQ 716 (800)
T 2wjy_A 637 TQGQEEIASSGTSYLNRTEAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQ 716 (800)
T ss_dssp CCCCCEECSSBSCEECHHHHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHHHHHHHHHCSSCHHHHHTSEEECGGGGT
T ss_pred CCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCEEECCCCCCC
T ss_conf 68851204788764689999999999999997599805599990658999999999986476541236866984211268
Q ss_pred CCCCCEEEEECCCCCCCCCCCCCCCCCCEEEECHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCEECCCCCCHHHHH
Q ss_conf 85113899972215897876788886830630011024439996332003781499999998843805027875031311
Q 001718 753 GREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSKQPLWNGLLTHYKEHECLVEGPLNNLKQSM 832 (1021)
Q Consensus 753 G~E~DvVIlS~VRSn~~~~iGFL~d~RRLNVALTRAK~~LiIVGn~~~Ls~~~~W~~Li~~~k~~~~l~~~~l~~l~~s~ 832 (1021)
|+|+|+||+|+||++...++||+.++||||||+||||++|+||||..+|+++++|+.|++|++++++++++++++|++++
T Consensus 717 G~E~dvVIlS~vrs~~~~~~gfl~d~rrLNVAlTRAk~~LiIvG~~~~l~~~~~w~~ll~~~~~~~~~~~~~~~~l~~~~ 796 (800)
T 2wjy_A 717 GREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESL 796 (800)
T ss_dssp TCCEEEEEEECCCCSCCCCCGGGTCHHHHHHHHTSEEEEEEEEECHHHHTSSHHHHHHHHHHHHTTCEEESCGGGCEECC
T ss_pred CCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHCCEEEEECHHHHCCCHHHHHHHHHHHHCCCEEECCHHHHHHHC
T ss_conf 87578799980578876663311671343130876631199998779954278999999999987999968888865540
Q ss_pred HHCC
Q ss_conf 1014
Q 001718 833 VQFQ 836 (1021)
Q Consensus 833 ~~~~ 836 (1021)
++++
T Consensus 797 ~~~~ 800 (800)
T 2wjy_A 797 MQFS 800 (800)
T ss_dssp CCC-
T ss_pred CCCC
T ss_conf 0579
No 2
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=1179.47 Aligned_cols=693 Identities=60% Similarity=1.027 Sum_probs=622.7
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCCCCCEEECCCCCCCCCHHHHHHHHCCCCEEEECCCCCCCCCCEEEECCCCCCC
Q ss_conf 77678833335558779882277197875823317999997531435563414440430689999743100001356632
Q 001718 136 GKADFTEHACRYCGVSNPACVVRCNVPSCRKWFCNSRGNTSGSHIVNHLVRAKHKEVCLHKDSPLGETILECYNCGCRNV 215 (1021)
Q Consensus 136 ~~~~~~~~~c~yc~~~~~~~~~~c~~~~~~~~fcn~~~~~~~shi~~~l~~~~~~~~~~h~~~~~~~~~~~cy~~~~~n~ 215 (1021)
+..++|+|||+|||||+|+|||+|++ |+||||||||+|++||||+||||||||||+||||+|||||+||||+||+|||
T Consensus 5 ~~~~~~~~~c~yc~~~~~~~~~~c~~--~~~wfcn~~~~~~~shi~~hl~~~~~~~~~l~~~~~~~~~~~~c~~c~~~n~ 82 (802)
T 2xzl_A 5 MSPSASDNSCAYCGIDSAKCVIKCNS--CKKWFCNTKNGTSSSHIVNHLVLSHHNVVSLHPDSDLGDTVLECYNCGRKNV 82 (802)
T ss_dssp -------CCCTTTCCCCTTTEEEETT--TCCEEECCCSSSSSCHHHHHHHHHTCCCEEECTTSSSCSCBCCCSSSCCCCT
T ss_pred CCCCCCHHHCCCCCCCCCCEEEEECC--CCCEECCCCCCCCCCHHHHHHHHCCCCEEECCCCCCCCCCEEEEECCCCCCE
T ss_conf 45658701072349999750778077--7867017999987339999998715871651678888984568623799741
Q ss_pred CCCCCEECCCCCEEEEEECHHHHH--------------------------------------------------------
Q ss_conf 111420014776489970516667--------------------------------------------------------
Q 001718 216 FLLGFISAKTESVVVLLCREPCLN-------------------------------------------------------- 239 (1021)
Q Consensus 216 f~lg~~~~~~~~~~~~~~r~~~~~-------------------------------------------------------- 239 (1021)
|+|||||||+|+|||||||+||++
T Consensus 83 f~lg~~~~~~~~~~~~~cr~~c~~~~~~~~~~~~~~~~i~~~~~~~~~~~~p~~~~~~~~~~~~~~~i~~~e~~w~~~~~ 162 (802)
T 2xzl_A 83 FLLGFVSAKSEAVVVLLCRIPCAQTKNANWDTDQWQPLIEDRQLLSWVAEQPTEEEKLKARLITPSQISKLEAKWRSNKD 162 (802)
T ss_dssp TTEEEEC------CEEEETTTTTTCC---CCGGGCEESBCSSSBCTTTSCCCCTTGGGGSCCCCHHHHHHHHHHHTTCCC
T ss_pred EEEEEEECCCCCEEEEEECCCCCCHHHCCCCHHHCCEEECCCCCCHHHCCCCCHHHHHHHCCCCHHHHHHHHHHHHHCCC
T ss_conf 35421460578669999678644432248767547311114654355406999799543237999999999998742868
Q ss_pred --------------------------------------------HHHHCCCCCCEEEEEEECCCCEEEEEEECCC-CCCC
Q ss_conf --------------------------------------------7531046422799997057880899998458-9887
Q 001718 240 --------------------------------------------MMKESQSKDNVTIRWDIGLNKKRVAYFVFPK-EDNE 274 (1021)
Q Consensus 240 --------------------------------------------~~~e~~~~~~~~~~~~~~l~~k~~~~~~~~~-~~~~ 274 (1021)
.++|++.+.+++++|+.+++++.++.|.++. .+.+
T Consensus 163 ~~l~d~~~~~~~~~~~~v~~~y~~~~~Y~~~~~~ll~lE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (802)
T 2xzl_A 163 ATINDIDAPEEQEAIPPLLLRYQDAYEYQRSYGPLIKLEADYDKQLKESQALEHISVSWSLALNNRHLASFTLSTFESNE 242 (802)
T ss_dssp CCC------------CCCCSSCSSHHHHHHHHHHHHHHHHHHHHHHHCCC--CCBCEEEEECTTSCEEEEEC--------
T ss_pred CCHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEEEECCCCCCC
T ss_conf 75666533466556466665569999999999899999997622346676444826754406798389999806645578
Q ss_pred CCCCCCCEEEEEECCCCCCCCCEEEEEEEEECC--CCEEEEEECCC-CCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHH
Q ss_conf 788999979999679999985059999999137--53899992248-999733588714999604563999999999999
Q 001718 275 LRLVPGDELRLRYSGDAAHPAWQSVGHVIKLTA--QEEVALELRAS-QGVPVDINHGFSVDFVWKSTSFDRMQGAMKTFA 351 (1021)
Q Consensus 275 ~~~~~GD~v~l~~~~~~~~~~~~~~G~V~~i~~--~~~v~i~l~~~-~~~p~~~~~~~~v~~~~~~~s~~R~~~AL~~~~ 351 (1021)
.+|..||.|.+++.+. ....|...|+|+++.+ .++|.+++... ...|.+...+|.++++|++++|+||+.||++++
T Consensus 243 ~~~~~GD~v~l~~~~~-~~~~~~~~g~V~~v~~~~~~~v~v~~~~~~~~~p~~~~~~~~v~~~~~~~~~~r~~~AL~~~~ 321 (802)
T 2xzl_A 243 LKVAIGDEMILWYSGM-QHPDWEGRGYIVRLPNSFQDTFTLELKPSKTPPPTHLTTGFTAEFIWKGTSYDRMQDALKKFA 321 (802)
T ss_dssp -CCCTTCEEEEEECSS-SSSCEEEEEEEEECCC---CCEEEEECCCSSCCCTTCCSSEEEEECCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCEEEEEECCC-CCCCEEEEEEEEEECCCCCCEEEEEEECCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHH
T ss_conf 9899999899997898-889515789999987888878999996788899600277748999756861899999999987
Q ss_pred HHHHCHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf 73100135677521498223443204698777999999999999999999742991899877998177999999999999
Q 001718 352 VDETSVSGYIYHHLLGHEVEVQMVRNTLPRRFGAPGLPELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAK 431 (1021)
Q Consensus 352 ~~e~~~s~~i~~~llg~~~~~~~~~~~lp~~~~~~~~~~LN~sQ~~AV~~aL~~~l~LIqGPPGTGKT~Tia~iI~~L~~ 431 (1021)
.++..++.++++.++++...+..+...+|+.|..+.+..||++|++||..++..++++|+||||||||+|+++++.++++
T Consensus 322 ~~~~~~~~~l~~~ll~~~~~~~~~~~~lp~~~~~~~~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i~~~i~~l~~ 401 (802)
T 2xzl_A 322 IDKKSISGYLYYKILGHQVVDISFDVPLPKEFSIPNFAQLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTSATIVYHLSK 401 (802)
T ss_dssp HCTTSBCHHHHHHHHTCCCCCCCCCCCCCSCCSCTTSCCCCHHHHHHHHHHTTCSEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred HCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 51334036788876077656543465685111543455689999999999863997799878997789999999999986
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCH
Q ss_conf 19991999829499999999999832984887512110013795013348888741161237889897774543235890
Q 001718 432 QGQGQVLVCAPSNVAVDQLAEKISATGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSEKSELHKLQQLKDEQGELSS 511 (1021)
Q Consensus 432 ~~~~kILV~ApSN~AvD~L~erL~~~gl~ivRlg~~sre~i~~~v~~l~l~~~i~~~~~~~~~~L~kl~~lk~e~~~ls~ 511 (1021)
....+||+|||||+|+|+|.+||.+.+++++|+++++++.+...+...++|..++..... ++.++..++.+.+.++.
T Consensus 402 ~~~~~ILv~a~tn~A~d~l~~rL~~~g~~ilR~g~~~r~~i~~~~~~~tl~~~~~~~~~~---~l~~l~~~~~~~~~ls~ 478 (802)
T 2xzl_A 402 IHKDRILVCAPSNVAVDHLAAKLRDLGLKVVRLTAKSREDVESSVSNLALHNLVGRGAKG---ELKNLLKLKDEVGELSA 478 (802)
T ss_dssp HHCCCEEEEESSHHHHHHHHHHHHHTTCCEEECCCGGGTTSCCTTGGGBHHHHHHTTCCT---HHHHHHHHHHHHSCCCH
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHHHCCCEEEECCCCHHHHCCHHHHHHHHHHHHHHCHH---HHHHHHHHHHHHCCCCH
T ss_conf 799729998485799999999998627507862223222103156564299999851689---99999999886445788
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCE
Q ss_conf 58999999999999998612640100023359987446887799997799999045443100268648992786688860
Q 001718 512 SDEKKYKALKRATEREISQSADVICCTCVGAGDPRLANFRFRQVLIDESTQATEPECLIPLVLGAKQVVLVGDHCQLGPV 591 (1021)
Q Consensus 512 ~~~k~~~~l~~~~e~~iL~~a~VI~~T~~~a~~~~L~~~~Fd~VIIDEAsQa~E~e~LIpL~~~~kklILVGD~~QLpPv 591 (1021)
.+.+.|+.+.+..+..+++.++||++|+.+++...+.. +||+||||||+|++++++|+++...++++||||||+||+|+
T Consensus 479 ~~~~~~~~~~~~~~~~~l~~a~VI~~T~~~~~~~~L~~-~fd~viIDEA~q~~e~~~li~l~~~~~~lilvGD~~QL~pv 557 (802)
T 2xzl_A 479 SDTKRFVKLVRKTEAEILNKADVVCCTCVGAGDKRLDT-KFRTVLIDESTQASEPECLIPIVKGAKQVILVGDHQQLGPV 557 (802)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSEEEEETTGGGCTTCCS-CCSEEEETTGGGSCHHHHHHHHTTTBSEEEEEECTTSCCCC
T ss_pred HHHHHHHHHHHHHHHHHHCCCCEEEECHHHCCHHHHHC-CCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCE
T ss_conf 89988899999999987523999983323317277755-69999998850324478999998579989998076113871
Q ss_pred EECHHHHHHCCHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 30287987121188999999829965675674216987777652222358335654311224689998899999994999
Q 001718 592 IMCKKAARAGLAQSLFERLVLLGLKPIRLQVQYRMHPSLSEFPSNSFYEGTLQNGVTINERQSSGIDFPWPVPNRPMFFY 671 (1021)
Q Consensus 592 v~s~~a~~~gl~~SLFeRL~~~g~~~i~L~~qYRmhp~I~~f~S~lFY~g~L~~~~~~~~r~~~~~~~~~p~~~~p~~f~ 671 (1021)
+.+..+...++..|+|+|+...+..+++|++||||||.|++|+|++||+|+|.++.....+......++|+....|++|+
T Consensus 558 v~s~~a~~~gl~~slferl~~~~~~~~~L~~qYRm~p~I~~f~n~~fY~g~L~~~~~~~~r~~~~~~~~~~~~~~p~~f~ 637 (802)
T 2xzl_A 558 ILERKAADAGLKQSLFERLISLGHVPIRLEVQYRMNPYLSEFPSNMFYEGSLQNGVTIEQRTVPNSKFPWPIRGIPMMFW 637 (802)
T ss_dssp CCCHHHHHTTTTCCHHHHHHHTTCCCEECCEECSSCHHHHHHHHHHHSTTCCEESSCTTTTCCTTCCCCCSSTTCCEEEE
T ss_pred ECHHHHHHCCCCHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCCCCHHHHCCCCCCCCCCCCCCCEEEE
T ss_conf 41054656587435999998669983475200488868999889875288465687534311455567777899987999
Q ss_pred EECCCEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHCCCHHHHCCCCEEEEECCCC
Q ss_conf 80794011156787569999999999999999869999948999125027999999998513022420497299400157
Q 001718 672 VQMGQEEISASGTSYLNRTEAANVEKIVTTFLRSGVVPSQIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIEVASVDSF 751 (1021)
Q Consensus 672 ~~~g~ee~~~~~~S~~N~~EA~~V~~iV~~Ll~~gv~~~dIGIITPY~~Qv~~I~~~L~~~~~l~~~~~~~I~V~TVdsf 751 (1021)
++.|.++....+.|+.|..||..|++++..|++.|+.+.+|||||||++|+..|++.|...+.+.......|+|+|||+|
T Consensus 638 ~~~g~~~~~~~~~s~~N~~EA~~V~~~v~~L~~~g~~~~~IgVItpy~~Q~~~I~~~L~~~~~l~~~~~~~v~V~TVd~f 717 (802)
T 2xzl_A 638 ANYGREEISANGTSFLNRIEAMNCERIITKLFRDGVKPEQIGVITPYEGQRAYILQYMQMNGSLDKDLYIKVEVASVDAF 717 (802)
T ss_dssp ECCCCCEECTTSSSEECHHHHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHHHHHCSSCHHHHHTSEEEEHHHH
T ss_pred ECCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCEEECCHHHC
T ss_conf 86895021378988689999999999999999759983428998366999999999998725655001366598235434
Q ss_pred CCCCCCEEEEECCCCCCCCCCCCCCCCCCEEEECHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCEECCCCCCHHHH
Q ss_conf 88511389997221589787678888683063001102443999633200378149999999884380502787503131
Q 001718 752 QGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSKQPLWNGLLTHYKEHECLVEGPLNNLKQS 831 (1021)
Q Consensus 752 QG~E~DvVIlS~VRSn~~~~iGFL~d~RRLNVALTRAK~~LiIVGn~~~Ls~~~~W~~Li~~~k~~~~l~~~~l~~l~~s 831 (1021)
||+|+|+||+|+||++....+||+.++|||||||||||++|+||||..+|+++++|++|+++++++++++++++++|+++
T Consensus 718 QG~E~dvVIlS~vrs~~~~~~gfl~d~rrLNVAlTRAk~~LiIvg~~~~l~~~~~w~~ll~~~~~~~~~~~~~~~~l~~~ 797 (802)
T 2xzl_A 718 QGREKDYIILSCVRANEQQAIGFLRDPRRLNVGLTRAKYGLVILGNPRSLARNTLWNHLLIHFREKGCLVEGTLDNLQLC 797 (802)
T ss_dssp TTCCEEEEEEECCCCCTTCCCGGGGCHHHHHHHHSSEEEEEEEEECHHHHTTSHHHHHHHHHHHHHTCEEEEETTEEEEC
T ss_pred CCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEHHHHHCEEEEEECHHHHCCCHHHHHHHHHHHHCCCEECCCHHHHHHH
T ss_conf 88726779998236888777341258451112574652839999887996117699999999998599624888998662
Q ss_pred HHHC
Q ss_conf 1101
Q 001718 832 MVQF 835 (1021)
Q Consensus 832 ~~~~ 835 (1021)
++++
T Consensus 798 ~~~~ 801 (802)
T 2xzl_A 798 TVQL 801 (802)
T ss_dssp CCCC
T ss_pred CCCC
T ss_conf 4377
No 3
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=1.00 E-value=1 Score=811.05 Aligned_cols=603 Identities=71% Similarity=1.196 Sum_probs=538.2
Q ss_pred EEEECHHHHHHHHHCCCCCCEEEEEEECCCCEEEEEEECCCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEEEEEECC--
Q ss_conf 997051666775310464227999970578808999984589887788999979999679999985059999999137--
Q 001718 230 VLLCREPCLNMMKESQSKDNVTIRWDIGLNKKRVAYFVFPKEDNELRLVPGDELRLRYSGDAAHPAWQSVGHVIKLTA-- 307 (1021)
Q Consensus 230 ~~~~r~~~~~~~~e~~~~~~~~~~~~~~l~~k~~~~~~~~~~~~~~~~~~GD~v~l~~~~~~~~~~~~~~G~V~~i~~-- 307 (1021)
+.++++.+ ..++|++.+.+++++|+++++++.+++|.++..+.+.+|..||.|.+++.++ ....|.+.|+|+++.+
T Consensus 20 l~~E~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gd~v~l~~~~~-~~~~~~~~g~v~~~~~~~ 97 (624)
T 2gk6_A 20 VKLEADYD-KKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDEICLRYKGD-LAPLWKGIGHVIKVPDNY 97 (624)
T ss_dssp HHHHHHHH-HHHHHHTCEEEECEEEEECTTSCEEEEEECC-------CCTTCEEEEEECSS-SSCCCEEEEEEEECSCSS
T ss_pred HHHHHHHH-HHHHHHHHCCCCEEEEEECCCCCEEEEEEECCCCCCCCCCCCCEEEEEECCC-CCCCCEEEEEEEEECCCC
T ss_conf 99999997-8887654045825876634788169999706433579689999899997888-888747899999964778
Q ss_pred CCEEEEEECCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCC
Q ss_conf 53899992248999733588714999604563999999999999731001356775214982234432046987779999
Q 001718 308 QEEVALELRASQGVPVDINHGFSVDFVWKSTSFDRMQGAMKTFAVDETSVSGYIYHHLLGHEVEVQMVRNTLPRRFGAPG 387 (1021)
Q Consensus 308 ~~~v~i~l~~~~~~p~~~~~~~~v~~~~~~~s~~R~~~AL~~~~~~e~~~s~~i~~~llg~~~~~~~~~~~lp~~~~~~~ 387 (1021)
.++|.|+++.....|.+....|.++++|++++|+||+.||++++.++..++.++++.++++...+..++..+|+.|..+.
T Consensus 98 ~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~al~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~ 177 (624)
T 2gk6_A 98 GDEIAIELRSSVGAPVEVTHNFQVDFVWKSTSFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQG 177 (624)
T ss_dssp CSEEEEEESCCTTCCCSCCSSEEEEECCCCHHHHHHHHHHHHHHHCTTSBCSHHHHHHTTCCCCCCCCCCCCCSCCSCTT
T ss_pred CCEEEEEECCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 87899998268888633566558999957726999999999987604551277899861888764212456752125445
Q ss_pred CCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHCCCEEEEECCC
Q ss_conf 99999999999999742991899877998177999999999999199919998294999999999998329848875121
Q 001718 388 LPELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISATGLKVVRLCAK 467 (1021)
Q Consensus 388 ~~~LN~sQ~~AV~~aL~~~l~LIqGPPGTGKT~Tia~iI~~L~~~~~~kILV~ApSN~AvD~L~erL~~~gl~ivRlg~~ 467 (1021)
+..||++|++||..++.+++++|+||||||||+|+++++.++++....+||+|||||.|+|+|.+++.+.+++++|++++
T Consensus 178 ~~~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv~a~tn~A~~~l~~~l~~~~~~~~R~~~~ 257 (624)
T 2gk6_A 178 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAK 257 (624)
T ss_dssp SCCCCHHHHHHHHHHHTCSEEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEEEESSHHHHHHHHHHHHTTTCCEEECCCT
T ss_pred CCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEECCC
T ss_conf 67899999999999962897699899998789999999999997489809999271899999999998619758960532
Q ss_pred CCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCC
Q ss_conf 10013795013348888741161237889897774543235890589999999999999986126401000233599874
Q 001718 468 SREAVSSPVEHLTLHYQVRHLDTSEKSELHKLQQLKDEQGELSSSDEKKYKALKRATEREISQSADVICCTCVGAGDPRL 547 (1021)
Q Consensus 468 sre~i~~~v~~l~l~~~i~~~~~~~~~~L~kl~~lk~e~~~ls~~~~k~~~~l~~~~e~~iL~~a~VI~~T~~~a~~~~L 547 (1021)
+++.+..++..++++..++.... ..++.++..++.+.++++..+++.|+.+.+..+..+++.++||++||.++++..+
T Consensus 258 ~r~~~~~~~~~~tl~~~~~~~~~--~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~vI~~T~~~~~~~~l 335 (624)
T 2gk6_A 258 SREAIDSPVSFLALHNQIRNMDS--MPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTCVGAGDPRL 335 (624)
T ss_dssp GGGSCCCTTTTTBHHHHHTSCSS--CHHHHHHHTTCC----CCHHHHHHHHHHHHHHHHHHHHTCSEEEEETGGGGCGGG
T ss_pred CCHHHCCCHHHHHHHHHHHHCCC--HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEECCHHHCCHHH
T ss_conf 20111130456659999980523--6999999999876421377789999999998899987149999992701151466
Q ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCEEECHHHHHHCCHHHHHHHHHHCCCCCEEEEEEECCC
Q ss_conf 46887799997799999045443100268648992786688860302879871211889999998299656756742169
Q 001718 548 ANFRFRQVLIDESTQATEPECLIPLVLGAKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGLKPIRLQVQYRMH 627 (1021)
Q Consensus 548 ~~~~Fd~VIIDEAsQa~E~e~LIpL~~~~kklILVGD~~QLpPvv~s~~a~~~gl~~SLFeRL~~~g~~~i~L~~qYRmh 627 (1021)
...+||+||||||+|++++++|+++...++++||||||+||||++.+..+...++..|+|+|+...+..+++|++|||||
T Consensus 336 ~~~~fd~viIDEAsQ~~e~~~li~l~~~~~~~ilvGD~~QL~p~v~~~~~~~~gl~~Slferl~~~~~~~~~L~~qYR~~ 415 (624)
T 2gk6_A 336 AKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMH 415 (624)
T ss_dssp TTCCCSEEEETTGGGSCHHHHHHHHTTTBSEEEEEECTTSCCCCCSCHHHHHHTTTSCHHHHHHHTTCCCEECCEECSSC
T ss_pred HCCCCCEEEEECCCCCCCHHHHHHHHHCCCEEEEECCHHCCCCEEECHHHHHCCCCHHHHHHHHHCCCCCEEEHHHHCCC
T ss_conf 46798879996301467589999998468749991670106985204888875874569999986699927830230768
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEECCCCCCCCCHHHHHHHHHHHHHHHHCCC
Q ss_conf 87777652222358335654311224689998899999994999807940111567875699999999999999998699
Q 001718 628 PSLSEFPSNSFYEGTLQNGVTINERQSSGIDFPWPVPNRPMFFYVQMGQEEISASGTSYLNRTEAANVEKIVTTFLRSGV 707 (1021)
Q Consensus 628 p~I~~f~S~lFY~g~L~~~~~~~~r~~~~~~~~~p~~~~p~~f~~~~g~ee~~~~~~S~~N~~EA~~V~~iV~~Ll~~gv 707 (1021)
|.|++|+|.+||+++|.++.....+......++|+..+.|++|+++.|.++....+.|+.|..||..|.+++..+++.++
T Consensus 416 ~~I~~~~n~~fY~~~L~~~~~~~~r~~~~~~~~~~~~~~p~~~~~~~g~~~~~~~~~s~~N~~Ea~~v~~~v~~l~~~g~ 495 (624)
T 2gk6_A 416 PALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTKLLKAGA 495 (624)
T ss_dssp HHHHHHHHHHHSTTCCEESSCTGGGCCTTCCCCCSSTTCCEEEEECCCCEECCTTSSCCEEHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHCCCCCCCCCCHHHHCCCCCCCCCCCCCCCEEEEECCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHCCC
T ss_conf 45876548865576465688634410135677888999998999858830333789885289999999999999997599
Q ss_pred CCCCEEEECCCCHHHHHHHHHHHHCCCHHHHCCCCEEEEECCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCEEEECHH
Q ss_conf 99948999125027999999998513022420497299400157885113899972215897876788886830630011
Q 001718 708 VPSQIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIEVASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTR 787 (1021)
Q Consensus 708 ~~~dIGIITPY~~Qv~~I~~~L~~~~~l~~~~~~~I~V~TVdsfQG~E~DvVIlS~VRSn~~~~iGFL~d~RRLNVALTR 787 (1021)
.+++|||||||++|+..|++.+...+.+.......|+|+|||+|||+|+|+||+|+||++....+||+.++||||||+||
T Consensus 496 ~~~dIgVItpy~~Q~~~i~~~l~~~~~~~~~~~~~v~v~TVd~fQG~E~dvVIls~vrs~~~~~~gfl~~~~rlnVAlTR 575 (624)
T 2gk6_A 496 KPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTR 575 (624)
T ss_dssp CGGGEEEECSCHHHHHHHHHHHHHSCSSCHHHHHHSEEECHHHHTTCCEEEEEEEECC------CCTTTCHHHHHHHTTS
T ss_pred CCCEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCEEEECHHHCCCCCCCEEEEEEECCCCCCCCCCCCCCCEEEEEHHH
T ss_conf 97809998688999999999998602232002476189322324886057899995047987874645883502103446
Q ss_pred HCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCEECCCCCCHHHHHHHCC
Q ss_conf 0244399963320037814999999988438050278750313111014
Q 001718 788 ARYGIVILGNPKVLSKQPLWNGLLTHYKEHECLVEGPLNNLKQSMVQFQ 836 (1021)
Q Consensus 788 AK~~LiIVGn~~~Ls~~~~W~~Li~~~k~~~~l~~~~l~~l~~s~~~~~ 836 (1021)
||++|+||||..+|+++++|+.|++|+++++|++++++++|++++++++
T Consensus 576 Ak~~L~ivg~~~~l~~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~ 624 (624)
T 2gk6_A 576 ARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFS 624 (624)
T ss_dssp EEEEEEEEECHHHHTTSHHHHHHHHHHHHTTCCCCSCGGGCCCCCC---
T ss_pred HHCCEEEEECHHHHCCCHHHHHHHHHHHHCCCEEECCHHHHHHHCCCCC
T ss_conf 5385899988899734769999999999879889588888766412579
No 4
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=1.00 E-value=1 Score=737.82 Aligned_cols=559 Identities=28% Similarity=0.404 Sum_probs=434.1
Q ss_pred CCCEEEEEE-ECCCCEEEEEEECCCCC-----CCCCCCCCCEEEEEECCCCCCCCCEEEEEEEEECCCCEEEEEECCCCC
Q ss_conf 422799997-05788089999845898-----877889999799996799999850599999991375389999224899
Q 001718 247 KDNVTIRWD-IGLNKKRVAYFVFPKED-----NELRLVPGDELRLRYSGDAAHPAWQSVGHVIKLTAQEEVALELRASQG 320 (1021)
Q Consensus 247 ~~~~~~~~~-~~l~~k~~~~~~~~~~~-----~~~~~~~GD~v~l~~~~~~~~~~~~~~G~V~~i~~~~~v~i~l~~~~~ 320 (1021)
.-++.+.+. .++.++.+..|...+.. ...+|.+||.|.+...... ..+...|+|.++.. +.|.|.+.....
T Consensus 45 ~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~~Gd~v~~~~~~~~--~~~~~~g~v~~~~~-~~i~v~~~~~~~ 121 (646)
T 4b3f_X 45 LLKLQVSSQRTGLYGRLLVTFEPRRYGSAAALPSNSFTSGDIVGLYDAANE--GSQLATGILTRVTQ-KSVTVAFDESHD 121 (646)
T ss_dssp EEEEEEEEEEECSSSCEEEEEEESCC---CCCCCCCCCTTCEEEEEETTTT--SCCCEEEEEEEEET-TEEEEECC----
T ss_pred ECCEEEEEEEECCCCEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCC--CCCEEEEEEEEEEC-CEEEEEECCCCC
T ss_conf 326488888965798599999835778877786678998998999966899--87148999999949-999999888653
Q ss_pred --CCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf --973358871499960456399999999999973100135677521498223443204698777999999999999999
Q 001718 321 --VPVDINHGFSVDFVWKSTSFDRMQGAMKTFAVDETSVSGYIYHHLLGHEVEVQMVRNTLPRRFGAPGLPELNASQVFA 398 (1021)
Q Consensus 321 --~p~~~~~~~~v~~~~~~~s~~R~~~AL~~~~~~e~~~s~~i~~~llg~~~~~~~~~~~lp~~~~~~~~~~LN~sQ~~A 398 (1021)
........|.+++.+++++|+||+.||..+..........+++.+++......... ..+..| ....||++|++|
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~r~~~al~~l~~~~~~~~~~l~~~l~~~~~p~~~~~-~~~~~~---~~~~LN~~Q~~A 197 (646)
T 4b3f_X 122 FQLSLDRENSYRLLKLANDVTYRRLKKALIALKKYHSGPASSLIEVLFGRSAPSPASE-IHPLTF---FNTCLDTSQKEA 197 (646)
T ss_dssp ---CCCSSCCEEEEEECCHHHHHHHHHHHHHHHTCCSSTTHHHHHHHTTSSCCCCCCC-CCCCCC---SSTTCCHHHHHH
T ss_pred CCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCC-CCCCCC---CCCCCCHHHHHH
T ss_conf 3335578984799980660689999999998521246725779998749999997655-576532---578889999999
Q ss_pred HHHHHC-CCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCH
Q ss_conf 999742-9918998779981779999999999991999199982949999999999983298488751211001379501
Q 001718 399 VKSVLQ-RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISATGLKVVRLCAKSREAVSSPVE 477 (1021)
Q Consensus 399 V~~aL~-~~l~LIqGPPGTGKT~Tia~iI~~L~~~~~~kILV~ApSN~AvD~L~erL~~~gl~ivRlg~~sre~i~~~v~ 477 (1021)
|..+|. ++++||+||||||||+|++++|.++++.+. +||+|||||+|||+|++||...+.+++|+|+..+.. ..+.
T Consensus 198 V~~al~~~~~~lI~GPPGTGKT~ti~~~I~~l~~~~~-~ILv~a~TN~AvD~i~erL~~~~~~ilRlG~~~r~~--~~~~ 274 (646)
T 4b3f_X 198 VLFALSQKELAIIHGPPGTGKTTTVVEIILQAVKQGL-KVLCCAPSNIAVDNLVERLALCKQRILRLGHPARLL--ESIQ 274 (646)
T ss_dssp HHHHHHCSSEEEEECCTTSCHHHHHHHHHHHHHHTTC-CEEEEESSHHHHHHHHHHHHHTTCCEEECSCCSSCC--HHHH
T ss_pred HHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHCCC-EEEEECCCHHHHHHHHHHHHHCCCCEEEECCHHHHH--HHHH
T ss_conf 9999658996599889998889999999999984898-299991851888799999986277658823656520--2554
Q ss_pred HHHHHHHHHHCCCH-HHHHHHH-HHHHH---------HHHCCCCHH---HHHHHHHHHHHHHHHHHHCCCEEEECCCCCC
Q ss_conf 33488887411612-3788989-77745---------432358905---8999999999999998612640100023359
Q 001718 478 HLTLHYQVRHLDTS-EKSELHK-LQQLK---------DEQGELSSS---DEKKYKALKRATEREISQSADVICCTCVGAG 543 (1021)
Q Consensus 478 ~l~l~~~i~~~~~~-~~~~L~k-l~~lk---------~e~~~ls~~---~~k~~~~l~~~~e~~iL~~a~VI~~T~~~a~ 543 (1021)
...+...+...+.. ....+.+ +..+. .+...+... ..+.++........+.+..++||++||++++
T Consensus 275 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~l~~~~vv~~t~~~a~ 354 (646)
T 4b3f_X 275 QHSLDAVLARSDSAQIVADIRKDIDQVFVKNKKTQDKREKSNFRNEIKLLRKELKEREEAAMLESLTSANVVLATNTGAS 354 (646)
T ss_dssp TTBHHHHHTTTTCSSTHHHHHHHHTTSSTTTTC------CCSSHHHHHHHHHHHHHHHHHHHHHHHHHCSEEEEETTTTC
T ss_pred HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEHHHHH
T ss_conf 30188898504178899999988899998634322378887778899999999988888888988763354222201222
Q ss_pred CCC----CCCCCCCEEEEECCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCEEECHHHHHHCCHHHHHHHHHHCC--CCC
Q ss_conf 987----44688779999779999904544310026864899278668886030287987121188999999829--965
Q 001718 544 DPR----LANFRFRQVLIDESTQATEPECLIPLVLGAKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLG--LKP 617 (1021)
Q Consensus 544 ~~~----L~~~~Fd~VIIDEAsQa~E~e~LIpL~~~~kklILVGD~~QLpPvv~s~~a~~~gl~~SLFeRL~~~g--~~~ 617 (1021)
... +...+||+||||||+|++|+++|+|+.. ++++||||||+||||++.+..+...++..|+|+||.... ...
T Consensus 355 ~~~~~~~~~~~~Fd~vIIDEAsQ~~e~~~lipL~~-~~~~ILVGD~~QLpP~v~~~~a~~~gl~~SlferL~~~~~~~~v 433 (646)
T 4b3f_X 355 ADGPLKLLPESYFDVVVIDECAQALEASCWIPLLK-ARKCILAGDHKQLPPTTVSHKAALAGLSLSLMERLAEEYGARVV 433 (646)
T ss_dssp SSSGGGGSCTTCCSEEEETTGGGSCHHHHTTTGGG-SSEEEEEECTTSCCCCCSCHHHHHTTTTCCHHHHHHHHHGGGTE
T ss_pred HHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHCCC-CCEEEECCCCCCCCCEECCHHHHHCCCCCHHHHHHHHHCCCCEE
T ss_conf 33588764312688899717544455788752035-54289707865568501243666605411299999986698615
Q ss_pred EEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCEEEEEECCCE---EECCCCCCCCCHHHH
Q ss_conf 675674216987777652222358335654311224689998--899999994999807940---111567875699999
Q 001718 618 IRLQVQYRMHPSLSEFPSNSFYEGTLQNGVTINERQSSGIDF--PWPVPNRPMFFYVQMGQE---EISASGTSYLNRTEA 692 (1021)
Q Consensus 618 i~L~~qYRmhp~I~~f~S~lFY~g~L~~~~~~~~r~~~~~~~--~~p~~~~p~~f~~~~g~e---e~~~~~~S~~N~~EA 692 (1021)
.+|++||||||.|++|+|+.||+|+|.++.....+....... .++....|++|+++.|.. .....+.|+.|..||
T Consensus 434 ~~L~~qYRmhp~I~~f~n~~fY~g~L~~~~~~~~~~~~~lp~~~~~~~~~~p~~f~d~~g~~~~~~~~~~~~s~~N~~EA 513 (646)
T 4b3f_X 434 RTLTVQYRMHQAIMRWASDTMYLGQLTAHSSVARHLLRDLPGVAATEETGVPLLLVDTAGCGLFELEEEDEQSKGNPGEV 513 (646)
T ss_dssp EECCEESSSCHHHHHHHHHHHSTTCCEECTTTTTCCGGGSTTCCCCTTTTCSEEEEECTTSSCCCCC-----CCCCHHHH
T ss_pred EECCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHH
T ss_conf 53520127768888655776318845458406655420366666664568852788548876432202688664678999
Q ss_pred HHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHCCCHHHHCCCCEEEEECCCCCCCCCCEEEEECCCCCCCCCC
Q ss_conf 99999999999869999948999125027999999998513022420497299400157885113899972215897876
Q 001718 693 ANVEKIVTTFLRSGVVPSQIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIEVASVDSFQGREKDYIILSCVRSNEHQGI 772 (1021)
Q Consensus 693 ~~V~~iV~~Ll~~gv~~~dIGIITPY~~Qv~~I~~~L~~~~~l~~~~~~~I~V~TVdsfQG~E~DvVIlS~VRSn~~~~i 772 (1021)
.+|..++..|++.|+++.+|||||||++|+.+|++.|... ..+|+|+|||+|||+|+|+||+|+||+|....+
T Consensus 514 ~~V~~~v~~L~~~gv~~~dIgVItpYraQ~~~l~~~l~~~-------~~~i~v~TVd~fQG~E~dvII~S~vrsn~~~~i 586 (646)
T 4b3f_X 514 RLVSLHIQALVDAGVPARDIAVVSPYNLQVDLLRQSLVHR-------HPELEIKSVDGFQGREKEAVILSFVRSNRKGEV 586 (646)
T ss_dssp HHHHHHHHHHHHHTCCGGGEEEEESCHHHHHHHHHHHTTT-------CTTCEEEEGGGGTTCCEEEEEEECCCCCTTCCC
T ss_pred HHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHHH-------CCCCEECCHHHCCCCCCCEEEEEECCCCCCCCC
T ss_conf 9999999999966989684999899799999999999975-------999798784316645478899995067999996
Q ss_pred CCCCCCCCEEEECHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCEECC
Q ss_conf 788886830630011024439996332003781499999998843805027
Q 001718 773 GFLNDPRRLNVALTRARYGIVILGNPKVLSKQPLWNGLLTHYKEHECLVEG 823 (1021)
Q Consensus 773 GFL~d~RRLNVALTRAK~~LiIVGn~~~Ls~~~~W~~Li~~~k~~~~l~~~ 823 (1021)
||+.|+|||||||||||++||||||..+|+++++|++|++|+++++++..+
T Consensus 587 GFl~~~rRlNVAlTRAk~~liivGn~~~l~~~~~~~~li~~~~~~g~~~~~ 637 (646)
T 4b3f_X 587 GFLAEDRRINVAVTRARRHVAVICDSRTVNNHAFLKTLVEYFTQHGEVRTA 637 (646)
T ss_dssp CSTTCHHHHHHHHHTEEEEEEEEECHHHHTTSHHHHHHHHHHHHSSEEEEG
T ss_pred CCCCCCCCEEEEHHHHHCEEEEEECHHHHCCCHHHHHHHHHHHHCCCEEEH
T ss_conf 644896848727456618089997268964787999999999987989658
No 5
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=1.00 E-value=1 Score=290.27 Aligned_cols=291 Identities=21% Similarity=0.215 Sum_probs=190.2
Q ss_pred CCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 99999999999997429918998779981779999999999991999199982949999999999983298488751211
Q 001718 389 PELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISATGLKVVRLCAKS 468 (1021)
Q Consensus 389 ~~LN~sQ~~AV~~aL~~~l~LIqGPPGTGKT~Tia~iI~~L~~~~~~kILV~ApSN~AvD~L~erL~~~gl~ivRlg~~s 468 (1021)
..||++|++|+..++..++++|+||||||||+++..++..+...+ .+|+++|||++|+++|.+++....
T Consensus 188 ~~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~i~~l~~~l~~~g-~~Vl~~ApT~~Aa~~L~e~~~~~a---------- 256 (574)
T 3e1s_A 188 KGLSEEQASVLDQLAGHRLVVLTGGPGTGKSTTTKAVADLAESLG-LEVGLCAPTGKAARRLGEVTGRTA---------- 256 (574)
T ss_dssp TTCCHHHHHHHHHHTTCSEEEEECCTTSCHHHHHHHHHHHHHHTT-CCEEEEESSHHHHHHHHHHHTSCE----------
T ss_pred CCCCHHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHHHHHCC-CEEEEECCCHHHHHHHHHHHCCCH----------
T ss_conf 799999999999997688799995999988999999999998569-829996485899997676636309----------
Q ss_pred CCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCC
Q ss_conf 00137950133488887411612378898977745432358905899999999999999861264010002335998744
Q 001718 469 REAVSSPVEHLTLHYQVRHLDTSEKSELHKLQQLKDEQGELSSSDEKKYKALKRATEREISQSADVICCTCVGAGDPRLA 548 (1021)
Q Consensus 469 re~i~~~v~~l~l~~~i~~~~~~~~~~L~kl~~lk~e~~~ls~~~~k~~~~l~~~~e~~iL~~a~VI~~T~~~a~~~~L~ 548 (1021)
.++|..+... . + ........
T Consensus 257 ----------~Tih~ll~~~---------------~---------------------------------~--~~~~~~~~ 276 (574)
T 3e1s_A 257 ----------STVHRLLGYG---------------P---------------------------------Q--GFRHNHLE 276 (574)
T ss_dssp ----------EEHHHHTTEE---------------T---------------------------------T--EESCSSSS
T ss_pred ----------HHHHHHHCCC---------------C---------------------------------C--HHHHHHCC
T ss_conf ----------8999987679---------------2---------------------------------0--32320103
Q ss_pred CCCCCEEEEECCCCCCCHH--HHHHHHCCCCEEEEECCCCCCCCEEECHHHHHHCCHHHHHHHHHHCCCCCEEEEEEECC
Q ss_conf 6887799997799999045--44310026864899278668886030287987121188999999829965675674216
Q 001718 549 NFRFRQVLIDESTQATEPE--CLIPLVLGAKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGLKPIRLQVQYRM 626 (1021)
Q Consensus 549 ~~~Fd~VIIDEAsQa~E~e--~LIpL~~~~kklILVGD~~QLpPvv~s~~a~~~gl~~SLFeRL~~~g~~~i~L~~qYRm 626 (1021)
...+|+||||||+|++... .|+.......++|||||+.||+|+.. .+.|..+.. ..+.+.|+++||+
T Consensus 277 ~~~~dvlIIDEasml~~~~~~~Ll~~~~~~~~lilvGD~~QL~~v~~----------g~~~~~l~~-~~~~~~L~~~~R~ 345 (574)
T 3e1s_A 277 PAPYDLLIVDEVSMMGDALMLSLLAAVPPGARVLLVGDTDQLPPVDA----------GLPLLALAQ-AAPTIKLTQVYRQ 345 (574)
T ss_dssp CCSCSEEEECCGGGCCHHHHHHHHTTSCTTCEEEEEECTTSCCCSSS----------CCHHHHHHH-HSCEEECCCCCHH
T ss_pred CCCCCEEEECCCCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCCCCC----------CCHHHHHHH-CCCEEECCEEEEC
T ss_conf 56588899717567789999999983768988999954332687668----------837999996-3988985201818
Q ss_pred C--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEECCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 9--87777652222358335654311224689998899999994999807940111567875699999999999999998
Q 001718 627 H--PSLSEFPSNSFYEGTLQNGVTINERQSSGIDFPWPVPNRPMFFYVQMGQEEISASGTSYLNRTEAANVEKIVTTFLR 704 (1021)
Q Consensus 627 h--p~I~~f~S~lFY~g~L~~~~~~~~r~~~~~~~~~p~~~~p~~f~~~~g~ee~~~~~~S~~N~~EA~~V~~iV~~Ll~ 704 (1021)
. ..|..+++.+ ..|.+.... ....|+.....++ .+..+.+++.
T Consensus 346 ~~~s~I~~~a~~i-~~g~~~~~~------------------~d~~~~~~~~~~~------------~~~~i~~~~~---- 390 (574)
T 3e1s_A 346 AAKNPIIQAAHGL-LHGEAPAWG------------------DKRLNLTEIEPDG------------GARRVALMVR---- 390 (574)
T ss_dssp HHTCHHHHHHHHH-HTTCCCCCC------------------BTTEEEEECCSTT------------CHHHHHHHHH----
T ss_pred CCCCHHHHHHHHH-HCCCCCCCC------------------CCEEEEECCCHHH------------HHHHHHHHHH----
T ss_conf 9961899999998-679986667------------------8769983799999------------9999999986----
Q ss_pred CCCCC-CCEEEECCCCHH---HHHHHHHHHHCC-----------------------------------------------
Q ss_conf 69999-948999125027---999999998513-----------------------------------------------
Q 001718 705 SGVVP-SQIGVITPYEGQ---RAYIVNYMSRNG----------------------------------------------- 733 (1021)
Q Consensus 705 ~gv~~-~dIGIITPY~~Q---v~~I~~~L~~~~----------------------------------------------- 733 (1021)
++.+ .+|.|++|.+.. +..+...++...
T Consensus 391 -~~~~~~~~~VL~~~~~g~~gv~~lN~~l~~~lnp~~~~~~~~~~~~~~Gd~V~~~~N~~~~~v~NGdiG~i~~~~~~~l 469 (574)
T 3e1s_A 391 -ELGGPGAVQVLTPMRKGPLGMDHLNYHLQALFNPGEGGVRIAEGEARPGDTVVQTKNDYNNEIFNGTLGMVLKAEGARL 469 (574)
T ss_dssp -HTTSGGGCEEEESCSSSTTSHHHHHHHHHHHHSCCSCCEECSSSEECTTCEEEECSCBTTTTBCTTCEEEEEEECSSCE
T ss_pred -CCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEECCEEEECCCEEEEEECCCCCCEECCCEEEEECCCCCEE
T ss_conf -4584357489986338853599999999997588887221278177469979993037524634586368971779989
Q ss_pred ---------CHHHHCCCCEE---EEECCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCEEEECHHHCCCEEEEECCCCC
Q ss_conf ---------02242049729---940015788511389997221589787678888683063001102443999633200
Q 001718 734 ---------ALRQQLYKEIE---VASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVL 801 (1021)
Q Consensus 734 ---------~l~~~~~~~I~---V~TVdsfQG~E~DvVIlS~VRSn~~~~iGFL~d~RRLNVALTRAK~~LiIVGn~~~L 801 (1021)
.+.......++ ..|||++||+|||.||+.++... ..+.+++++|||+||||+.|+|+|+.+.|
T Consensus 470 ~v~fdg~~v~~~~~~l~~~~~ayA~TIHksQGsEfd~Vil~l~~~~-----~~~l~r~LlYvAiTRAk~~l~lvg~~~~l 544 (574)
T 3e1s_A 470 TVDFDGNVVELTGAELFNLQLGYALTVHRAQGSEWGTVLGVLHEAH-----MPMLSRNLVYTALTRARDRFFSAGSASAW 544 (574)
T ss_dssp EEEETTEEEEECGGGGTTEEECSEEEHHHHTTCCEEEEEEEECGGG-----GGGCCHHHHHHHHHTEEEEEEEEECHHHH
T ss_pred EEEECCEEEEECHHHHHHHHHEEEEEHHHHCCCCCCEEEEECCCCC-----CCCCCCCEEEEEEEEEEEEEEEEECHHHH
T ss_conf 9998996999726774201011330088747866886999867765-----55345361898713016689999789999
Q ss_pred C
Q ss_conf 3
Q 001718 802 S 802 (1021)
Q Consensus 802 s 802 (1021)
.
T Consensus 545 ~ 545 (574)
T 3e1s_A 545 Q 545 (574)
T ss_dssp H
T ss_pred H
T ss_conf 9
No 6
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=1.00 E-value=1 Score=289.86 Aligned_cols=314 Identities=17% Similarity=0.187 Sum_probs=175.3
Q ss_pred CCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCC---CCCEEEECCCHHHHHHHHHHHHHC-C-----C
Q ss_conf 999999999999974299189987799817799999999999919---991999829499999999999832-9-----8
Q 001718 389 PELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQG---QGQVLVCAPSNVAVDQLAEKISAT-G-----L 459 (1021)
Q Consensus 389 ~~LN~sQ~~AV~~aL~~~l~LIqGPPGTGKT~Tia~iI~~L~~~~---~~kILV~ApSN~AvD~L~erL~~~-g-----l 459 (1021)
..||++|++||... .+..+|.||||||||+|++++|.+++... +.+||+++|||+|+++|.+|+.+. + +
T Consensus 8 ~~Ln~~Q~~av~~~--~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft~~aa~e~~~rl~~~~~~~~~~~ 85 (647)
T 3lfu_A 8 DSLNDKQREAVAAP--RSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLMGTSQGGM 85 (647)
T ss_dssp TTCCHHHHHHHTCC--SSCEEEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESSHHHHHHHHHHHHHHHCSCCTTC
T ss_pred HCCCHHHHHHHHCC--CCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCHHHEEEEECCHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 54999999998188--9987999789987899999999999983799952589895618999999999998725556780
Q ss_pred EEEEECCCCCCC---------CCCCCHH-------HHHHHHHHHCCCH----HHHHH-HHHHHHHHHH---CCCC---HH
Q ss_conf 488751211001---------3795013-------3488887411612----37889-8977745432---3589---05
Q 001718 460 KVVRLCAKSREA---------VSSPVEH-------LTLHYQVRHLDTS----EKSEL-HKLQQLKDEQ---GELS---SS 512 (1021)
Q Consensus 460 ~ivRlg~~sre~---------i~~~v~~-------l~l~~~i~~~~~~----~~~~L-~kl~~lk~e~---~~ls---~~ 512 (1021)
.+..+.+-.... ....... ..+...+...... ....+ ..+..++... ..+. ..
T Consensus 86 ~v~Tfhs~~~~il~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~k~~~~~~~~~~~~~~~ 165 (647)
T 3lfu_A 86 WVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLLKRLIKAMNLDEKQWPPRQAMWYINSQKDEGLRPHHIQSYGNP 165 (647)
T ss_dssp EEEEHHHHHHHHHHHTTGGGTCCTTCEEECHHHHHHHHHHHHHHTTCCTTTSCHHHHHHHHHHHHHTTCCCCCC----CC
T ss_pred EEECHHHHHHHHHHHHHHHHCCCCCCEEECHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHCCCH
T ss_conf 89728999999999979970999898885789999999999987699821048999999999998759998998750246
Q ss_pred H----HHHHHHHHHHH-HHHHHHCCCEEEECCCCCC-CCCC---CCCCCCEEEEECCCCCCCHHH--HHHHHCCCCEEEE
Q ss_conf 8----99999999999-9998612640100023359-9874---468877999977999990454--4310026864899
Q 001718 513 D----EKKYKALKRAT-EREISQSADVICCTCVGAG-DPRL---ANFRFRQVLIDESTQATEPEC--LIPLVLGAKQVVL 581 (1021)
Q Consensus 513 ~----~k~~~~l~~~~-e~~iL~~a~VI~~T~~~a~-~~~L---~~~~Fd~VIIDEAsQa~E~e~--LIpL~~~~kklIL 581 (1021)
. ...|+.+.... +...++..+++..++.... ...+ ...+|++|+|||+++.+..+. +..+....+++++
T Consensus 166 ~~~~~~~i~~~y~~~~~~~~~~df~dl~~~~~~~l~~~~~~~~~~~~~~~~ilVDE~QD~~~~q~~ll~~l~~~~~~l~~ 245 (647)
T 3lfu_A 166 VEQTWQKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPHILQHYRERFTNILVDEFQDTNNIQYAWIRLLAGDTGKVMI 245 (647)
T ss_dssp HHHHHHHHHHHHHHHHHHHTEEEHHHHHHHHHHHHHHCHHHHHHHHHHCCEEEESSGGGCCHHHHHHHHHHHTTTCEEEE
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEE
T ss_conf 89999999999999999869978999999999998769899999983198999978003989999999999668987999
Q ss_pred ECCCCCCCCEEECHHHHHHCCHHHHHHHHHHC--CCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 27866888603028798712118899999982--9965675674216987777652222358335654311224689998
Q 001718 582 VGDHCQLGPVIMCKKAARAGLAQSLFERLVLL--GLKPIRLQVQYRMHPSLSEFPSNSFYEGTLQNGVTINERQSSGIDF 659 (1021)
Q Consensus 582 VGD~~QLpPvv~s~~a~~~gl~~SLFeRL~~~--g~~~i~L~~qYRmhp~I~~f~S~lFY~g~L~~~~~~~~r~~~~~~~ 659 (1021)
|||++|..... .+-....|.++... +...+.|++|||+++.|++++|.+|+.+....... .+
T Consensus 246 vGD~~QsIy~f-------rga~~~~~~~~~~~~~~~~~~~L~~nyRs~~~I~~~~n~~~~~~~~~~~~~---------~~ 309 (647)
T 3lfu_A 246 VGDDDQSIYGW-------RGAQVENIQRFLNDFPGAETIRLEQNYRSTSNILSAANALIENNNGRLGKK---------LW 309 (647)
T ss_dssp EECGGGCCCGG-------GTCCTTHHHHHHHHCTTCEEEEECBCSSSCHHHHHHHHHHHTTCSSCCCCC---------CB
T ss_pred ECCCHHHHCCC-------CCCCHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCC---------CC
T ss_conf 80760212132-------587889999999868998599766578997799999999998542023774---------42
Q ss_pred CCCCCCCCEEEEEECCCEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHC
Q ss_conf 8999999949998079401115678756999999999999999986999994899912502799999999851
Q 001718 660 PWPVPNRPMFFYVQMGQEEISASGTSYLNRTEAANVEKIVTTFLRSGVVPSQIGVITPYEGQRAYIVNYMSRN 732 (1021)
Q Consensus 660 ~~p~~~~p~~f~~~~g~ee~~~~~~S~~N~~EA~~V~~iV~~Ll~~gv~~~dIGIITPY~~Qv~~I~~~L~~~ 732 (1021)
.......++.++... ....|+..|...+..++..|+.+++|+||++++.|...|...|...
T Consensus 310 ~~~~~~~~~~~~~~~------------~~~~e~~~ia~~I~~l~~~g~~~~diaVL~r~~~~~~~l~~~l~~~ 370 (647)
T 3lfu_A 310 TDGADGEPISLYCAF------------NELDEARFVVNRIKTWQDNGGALAECAILYRSNAQSRVLEEALLQA 370 (647)
T ss_dssp CSSCCCCCEEEEEEE------------EHHHHHHHHHHHHHHHHHTTCCGGGEEEEESSGGGHHHHHHHHHHT
T ss_pred CCCCCCCCEEEEECC------------CHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHHHC
T ss_conf 678899962899669------------8599999999999999976988067899984744399999999977
No 7
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=1.00 E-value=1 Score=282.19 Aligned_cols=307 Identities=15% Similarity=0.169 Sum_probs=170.1
Q ss_pred CCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHC---CCCCEEEECCCHHHHHHHHHHHHHC------CC
Q ss_conf 99999999999997429918998779981779999999999991---9991999829499999999999832------98
Q 001718 389 PELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQ---GQGQVLVCAPSNVAVDQLAEKISAT------GL 459 (1021)
Q Consensus 389 ~~LN~sQ~~AV~~aL~~~l~LIqGPPGTGKT~Tia~iI~~L~~~---~~~kILV~ApSN~AvD~L~erL~~~------gl 459 (1021)
..||++|++||... .+..+|.|+||||||++++++|.+|+.. ...+||++||||+|+++|.+|+... ++
T Consensus 10 ~~Ln~~Q~~av~~~--~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~~p~~IL~vTFTnkAA~Em~~Rl~~~l~~~~~~~ 87 (724)
T 1pjr_A 10 AHLNKEQQEAVRTT--EGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQSLLGGAAEDV 87 (724)
T ss_dssp TTSCHHHHHHHHCC--SSCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSHHHHHHHHHHHHHHHGGGGTTS
T ss_pred HHCCHHHHHHHHCC--CCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCHHHEEEEECCHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 52899999998288--9988999749997899999999999996699889968782669999999999999724655681
Q ss_pred EEEEECCCCCC-------CC--CCCCHHH-------HHHHHHHHCCC----HHHHHH-HHHHHHHHHHC---CCC----H
Q ss_conf 48875121100-------13--7950133-------48888741161----237889-89777454323---589----0
Q 001718 460 KVVRLCAKSRE-------AV--SSPVEHL-------TLHYQVRHLDT----SEKSEL-HKLQQLKDEQG---ELS----S 511 (1021)
Q Consensus 460 ~ivRlg~~sre-------~i--~~~v~~l-------~l~~~i~~~~~----~~~~~L-~kl~~lk~e~~---~ls----~ 511 (1021)
.+.-+.+-... .+ ......+ .+...++.+.. .....+ ..+..++.... .+. .
T Consensus 88 ~v~Tfhs~~~~ilr~~~~~~g~~~~f~i~d~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~k~~~~~~~~~~~~~~~ 167 (724)
T 1pjr_A 88 WISTFHSMCVRILRRDIDRIGINRNFSILDPTDQLSVMKTILKEKNIDPKKFEPRTILGTISAAKNELLPPEQFAKRAST 167 (724)
T ss_dssp EEEEHHHHHHHHHHHHGGGGTCCTTCEECCHHHHHHHHHHHHHTTSCTTTTCCHHHHHHHHHHHHHTTCCHHHHTTC---
T ss_pred EEEEHHHHHHHHHHHHHHHHCCCCCCEECCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHCCC
T ss_conf 99619999999999999985889897777899999999999987699822089999999999998769999999986237
Q ss_pred HH----HHHHHHHHHHH-HHHHHHCCCEEEECCCCCC-CCCC---CCCCCCEEEEECCCCCCCHHH--HHHHHCCCCEEE
Q ss_conf 58----99999999999-9998612640100023359-9874---468877999977999990454--431002686489
Q 001718 512 SD----EKKYKALKRAT-EREISQSADVICCTCVGAG-DPRL---ANFRFRQVLIDESTQATEPEC--LIPLVLGAKQVV 580 (1021)
Q Consensus 512 ~~----~k~~~~l~~~~-e~~iL~~a~VI~~T~~~a~-~~~L---~~~~Fd~VIIDEAsQa~E~e~--LIpL~~~~kklI 580 (1021)
.. ...|....... ....++..+++..+..... .+.+ ...+|++|+|||+|+.+..+. +..|.....+++
T Consensus 168 ~~~~~~~~iy~~Y~~~l~~~~~lDf~Dll~~~~~ll~~~~~v~~~~~~rf~~IlVDEfQDtn~~Q~~ll~~L~~~~~~l~ 247 (724)
T 1pjr_A 168 YYEKVVSDVYQEYQQRLLRNHSLDFDDLIMTTIQLFDRVPDVLHYYQYKFQYIHIDEYQDTNRAQYTLVKKLAERFQNIC 247 (724)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTEECTTHHHHHHHHHHHHCHHHHHHHHHHCSEEEESSGGGCCHHHHHHHHHHHTTTCCEE
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHCCEEEEEHHHCCCHHHHHHHHHHHCCCCEEE
T ss_conf 89999999999999999985999999999999999865979999998639899987676089999999999976898699
Q ss_pred EECCCCCCCCEEECHHHHHHCCH---HHHHHHHHHC--CCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 92786688860302879871211---8899999982--996567567421698777765222235833565431122468
Q 001718 581 LVGDHCQLGPVIMCKKAARAGLA---QSLFERLVLL--GLKPIRLQVQYRMHPSLSEFPSNSFYEGTLQNGVTINERQSS 655 (1021)
Q Consensus 581 LVGD~~QLpPvv~s~~a~~~gl~---~SLFeRL~~~--g~~~i~L~~qYRmhp~I~~f~S~lFY~g~L~~~~~~~~r~~~ 655 (1021)
+|||++|. .|++. ...|.++... +...+.|++|||+++.|++++|.++..+......
T Consensus 248 vVGD~~Qs----------IY~fRGA~~~~~~~f~~~~~~~~~i~L~~NyRSt~~Il~~an~li~~n~~~~~k-------- 309 (724)
T 1pjr_A 248 AVGDADQS----------IYRWRGADIQNILSFERDYPNAKVILLEQNYRSTKRILQAANEVIEHNVNRKPK-------- 309 (724)
T ss_dssp EEECGGGC----------CCGGGTCCTHHHHTHHHHSTTCEEEEECBCSSSCHHHHHHHHHHHTTCSSCCCC--------
T ss_pred EEECCHHH----------CCCCCCCCHHHHHHHHHHCCCCCEEECCCCCCCCHHHHHHHHHHHHHCCCCCCC--------
T ss_conf 99780662----------442458898999999987799819989987899789999999999857344676--------
Q ss_pred CCCCCCC--CCCCCEEEEEECCCEEECCCCCCCCCHHHHHHHHHHHHHHHH-CCCCCCCEEEECCCCHHHHHHHHHHH
Q ss_conf 9998899--999994999807940111567875699999999999999998-69999948999125027999999998
Q 001718 656 GIDFPWP--VPNRPMFFYVQMGQEEISASGTSYLNRTEAANVEKIVTTFLR-SGVVPSQIGVITPYEGQRAYIVNYMS 730 (1021)
Q Consensus 656 ~~~~~~p--~~~~p~~f~~~~g~ee~~~~~~S~~N~~EA~~V~~iV~~Ll~-~gv~~~dIGIITPY~~Qv~~I~~~L~ 730 (1021)
..|+ ....++.++... ....|+..|+..+..++. .|+.+.+|+||++.+.|...+.+.|.
T Consensus 310 ---~l~~~~~~g~~i~~~~~~------------~~~~Ea~~va~~I~~l~~~~g~~~~diAIL~R~~~~~~~le~~L~ 372 (724)
T 1pjr_A 310 ---RIWTENPEGKPILYYEAM------------NEADEAQFVAGRIREAVERGERRYRDFAVLYRTNAQSRVMEEMLL 372 (724)
T ss_dssp ---CCBCSSCCCCCEEEEEEE------------EHHHHHHHHHHHHHHHHTTTSCCGGGEEEEESSGGGHHHHHHHHH
T ss_pred ---CCCCCCCCCCCEEEEECC------------CHHHHHHHHHHHHHHHHHHCCCCHHHEEEEEECCHHHHHHHHHHH
T ss_conf ---566656899954999559------------879999999999999998269984463564305214899999998
No 8
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=1.00 E-value=1 Score=270.93 Aligned_cols=348 Identities=19% Similarity=0.235 Sum_probs=195.0
Q ss_pred CHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHC---CCCCEEEECCCHHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 99999999997429918998779981779999999999991---999199982949999999999983298488751211
Q 001718 392 NASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQ---GQGQVLVCAPSNVAVDQLAEKISATGLKVVRLCAKS 468 (1021)
Q Consensus 392 N~sQ~~AV~~aL~~~l~LIqGPPGTGKT~Tia~iI~~L~~~---~~~kILV~ApSN~AvD~L~erL~~~gl~ivRlg~~s 468 (1021)
++.|+.|+..++.+++++|+||||||||++++.++..+.+. ...+|+++|||++|+++|.+.+......+ .+....
T Consensus 151 ~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~APTg~AA~~L~e~~~~~~~~l-~l~~~~ 229 (608)
T 1w36_D 151 INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQL-PLTDEQ 229 (608)
T ss_dssp CCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSHHHHHHHHHHHTHHHHHS-SCCSCC
T ss_pred CHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHCC-CCCHHH
T ss_conf 9999999999962998999949999789999999999998630579759999187368999999999887507-877888
Q ss_pred CCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCC
Q ss_conf 00137950133488887411612378898977745432358905899999999999999861264010002335998744
Q 001718 469 REAVSSPVEHLTLHYQVRHLDTSEKSELHKLQQLKDEQGELSSSDEKKYKALKRATEREISQSADVICCTCVGAGDPRLA 548 (1021)
Q Consensus 469 re~i~~~v~~l~l~~~i~~~~~~~~~~L~kl~~lk~e~~~ls~~~~k~~~~l~~~~e~~iL~~a~VI~~T~~~a~~~~L~ 548 (1021)
+..+. ....++|..+. .... ...+ ......
T Consensus 230 ~~~~~--~~~~Tih~ll~---------------~~~~--------~~~~-------------------------~~~~~~ 259 (608)
T 1w36_D 230 KKRIP--EDASTLHRLLG---------------AQPG--------SQRL-------------------------RHHAGN 259 (608)
T ss_dssp CCSCS--CCCBTTTSCC-----------------------------------------------------------CTTS
T ss_pred HHCCC--HHHHHHHHHHC---------------CCCC--------CHHH-------------------------HHCCCC
T ss_conf 73240--55550575520---------------5898--------1677-------------------------752689
Q ss_pred CCCCCEEEEECCCCCCCHH--HHHHHHCCCCEEEEECCCCCCCCEEECHH------HHHHCCHHHHHHHHHHCC------
Q ss_conf 6887799997799999045--44310026864899278668886030287------987121188999999829------
Q 001718 549 NFRFRQVLIDESTQATEPE--CLIPLVLGAKQVVLVGDHCQLGPVIMCKK------AARAGLAQSLFERLVLLG------ 614 (1021)
Q Consensus 549 ~~~Fd~VIIDEAsQa~E~e--~LIpL~~~~kklILVGD~~QLpPvv~s~~------a~~~gl~~SLFeRL~~~g------ 614 (1021)
...+++||||||+|++... .++.......++||+||+.||+|+..... ....++..++++++....
T Consensus 260 ~l~~d~lIIDEAsml~~~~~~~Ll~~l~~~~~liLvGD~~QL~~V~~G~vl~dl~~~~~~g~~~~~~~~l~~~~~~~~~~ 339 (608)
T 1w36_D 260 PLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPA 339 (608)
T ss_dssp CCSCSEEEECSGGGCBHHHHHHHHHTCCTTCEEEEEECTTSGGGTSTTBCHHHHGGGGTTCCCHHHHHHHHHHSSSCCCC
T ss_pred CCCCCEEEEECHHHCCHHHHHHHHHHCCCCCEEEEECCHHHCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCC
T ss_conf 87799999945250899999999984888988999766044588789807999998775366678899998731754343
Q ss_pred -----C-----CCEEEEEEECCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCC------------------
Q ss_conf -----9-----65675674216987--777652222358335654311224689998-8999------------------
Q 001718 615 -----L-----KPIRLQVQYRMHPS--LSEFPSNSFYEGTLQNGVTINERQSSGIDF-PWPV------------------ 663 (1021)
Q Consensus 615 -----~-----~~i~L~~qYRmhp~--I~~f~S~lFY~g~L~~~~~~~~r~~~~~~~-~~p~------------------ 663 (1021)
. ..++|+++||+++. |..+++.+ ..|...............+.+ ++..
T Consensus 340 ~~~~~~~~~~~~~~~L~~~~R~~~~s~I~~la~~i-~~g~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (608)
T 1w36_D 340 GTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAI-NRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRY 418 (608)
T ss_dssp CSTTTTHHHHTTEEECCCCCCSSCCTTHHHHHHHH-TSCHHHHHTTTSGGGCCSSBCCBCCSTTTHHHHHHHHHHHTHHH
T ss_pred CCCCCCCCCCCCEEECCEEEEECCCCHHHHHHHHH-HCCCCHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHH
T ss_conf 21123554446277622545207843599999998-65881568998547888659972688678999999999999999
Q ss_pred ---------CC------CCEEEEEE--CCC---EEECCCCCCCCCH-------HHH-----HHHHHHHHHHHHCCCCCCC
Q ss_conf ---------99------99499980--794---0111567875699-------999-----9999999999986999994
Q 001718 664 ---------PN------RPMFFYVQ--MGQ---EEISASGTSYLNR-------TEA-----ANVEKIVTTFLRSGVVPSQ 711 (1021)
Q Consensus 664 ---------~~------~p~~f~~~--~g~---ee~~~~~~S~~N~-------~EA-----~~V~~iV~~Ll~~gv~~~d 711 (1021)
+. ........ .|. ...........|+ .+. +-|+. .+.-...++.+++
T Consensus 419 l~~~~~~~~~~~~~~~~~~~~vL~~~~~g~~gv~~lN~~i~~~l~~~~~~~~~~~~~~~~Gd~Vm~-~~Nd~~~gl~NGd 497 (608)
T 1w36_D 419 LDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMI-ARNDSALGLFNGD 497 (608)
T ss_dssp HHHHHTCCCSSTTHHHHTTEEEEESCSSSSSSHHHHHHHHHGGGTSCC--------------------------------
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEE-EEECHHHCCCCCC
T ss_conf 998651248899988986655327746883669999999999838567655466665428972367-5556143363797
Q ss_pred EEEECCCCHHHHHHHHHHHH-CC---CHHH---HCCCCEEEEECCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 89991250279999999985-13---0224---20497299400157885113899972215897876788886830630
Q 001718 712 IGVITPYEGQRAYIVNYMSR-NG---ALRQ---QLYKEIEVASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVA 784 (1021)
Q Consensus 712 IGIITPY~~Qv~~I~~~L~~-~~---~l~~---~~~~~I~V~TVdsfQG~E~DvVIlS~VRSn~~~~iGFL~d~RRLNVA 784 (1021)
||+|++.... +.-.+.. .+ .+.. .......+.|||++||+|+|.||+.+..... .+.+++++|||
T Consensus 498 iG~V~~~~~~---l~v~f~~~dg~~~~~~~~~l~~l~~~~a~TihksqG~e~~~v~~~~~~~~~-----~~~~~~~~Yva 569 (608)
T 1w36_D 498 IGIALDRGQG---TRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRT-----PVVTRELVYTA 569 (608)
T ss_dssp ----------------------------CCSCCCSCSSCSEEETTTTTTCCBSEEEEECCSSCC-----SSSCHHHHHHH
T ss_pred EEEEEECCCE---EEEEEECCCCCEEEECHHHCCCCCEEEEEEEEECCCCCCCEEEEEECCCCC-----CHHHHHHHHHH
T ss_conf 6999973881---799998899958995657777624489998781364348869999189866-----13342237731
Q ss_pred CHHHCCCEEEEECCCC
Q ss_conf 0110244399963320
Q 001718 785 LTRARYGIVILGNPKV 800 (1021)
Q Consensus 785 LTRAK~~LiIVGn~~~ 800 (1021)
+||||+.|+|+++...
T Consensus 570 ~tRa~~~l~l~~~~~~ 585 (608)
T 1w36_D 570 VTRARRRLSLYADERI 585 (608)
T ss_dssp HTTBSSCEEEECCTTH
T ss_pred HHHHHCEEEEEECHHH
T ss_conf 6044366899988899
No 9
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=1.00 E-value=1 Score=266.34 Aligned_cols=299 Identities=16% Similarity=0.151 Sum_probs=161.8
Q ss_pred CCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHC---CCCCEEEECCCHHHHHHHHHHHHHC-------CC
Q ss_conf 9999999999997429918998779981779999999999991---9991999829499999999999832-------98
Q 001718 390 ELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQ---GQGQVLVCAPSNVAVDQLAEKISAT-------GL 459 (1021)
Q Consensus 390 ~LN~sQ~~AV~~aL~~~l~LIqGPPGTGKT~Tia~iI~~L~~~---~~~kILV~ApSN~AvD~L~erL~~~-------gl 459 (1021)
.||++|++||... .+..+|.|+||||||+++++++.+++.. ...+||++||||+|+++|.+|+... .+
T Consensus 2 ~L~~~Q~~av~~~--~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~~~~~IL~lTfT~~Aa~em~~Rl~~~l~~~~~~~~ 79 (673)
T 1uaa_A 2 RLNPGQQQAVEFV--TGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQTLGRKEARGL 79 (673)
T ss_dssp CCCHHHHHHHHCC--SSEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESSHHHHHHHHHHHHHHSCTTTTTTS
T ss_pred CCCHHHHHHHHCC--CCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCHHHEEEEECCHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 9998999998388--99779995799976899999999999856998789587854689999999999987073234688
Q ss_pred EEEEECCCCCCCC---------CCCCHHH---HHHHHHHHCCC----HHHHHHHH----HHHHHHHHCCCCHHH------
Q ss_conf 4887512110013---------7950133---48888741161----23788989----777454323589058------
Q 001718 460 KVVRLCAKSREAV---------SSPVEHL---TLHYQVRHLDT----SEKSELHK----LQQLKDEQGELSSSD------ 513 (1021)
Q Consensus 460 ~ivRlg~~sre~i---------~~~v~~l---~l~~~i~~~~~----~~~~~L~k----l~~lk~e~~~ls~~~------ 513 (1021)
.+.-+.+-....+ ......+ .....++.... ........ +..++... +....
T Consensus 80 ~v~Tfhs~~~~il~~~~~~~g~~~~~~i~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~k~~~--~~~~~~~~~~~ 157 (673)
T 1uaa_A 80 MISTFHTLGLDIIKREYAALGMKANFSLFDDTDQLALLKELTEGLIEDDKVLLQQLISTISNWKNDL--KTPSQAAASAI 157 (673)
T ss_dssp EEEEHHHHHHHHHHHHHHHTTCCCCCCEECHHHHHHHHHHHTSTTSCSCHHHHHHHHHHHHHHHTTT--CCTTHHHHTCC
T ss_pred EEEEHHHHHHHHHHHHHHHHCCCCCCEEECHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC--CCHHHHHHHHH
T ss_conf 8972878799999998998589999887079999999999999764345446999999999998739--99899998742
Q ss_pred ---H----HHHHHHHHHH-HHHHHHCCCEEEECCCCCC-CCCC---CCCCCCEEEEECCCCCCCHHH--HHHHHCCCCEE
Q ss_conf ---9----9999999999-9998612640100023359-9874---468877999977999990454--43100268648
Q 001718 514 ---E----KKYKALKRAT-EREISQSADVICCTCVGAG-DPRL---ANFRFRQVLIDESTQATEPEC--LIPLVLGAKQV 579 (1021)
Q Consensus 514 ---~----k~~~~l~~~~-e~~iL~~a~VI~~T~~~a~-~~~L---~~~~Fd~VIIDEAsQa~E~e~--LIpL~~~~kkl 579 (1021)
. ..|..+.... +...++..+++..+..... ...+ ...+|++|+|||+++.+..+. +..+.....++
T Consensus 158 ~~~~~~~~~i~~~Y~~~l~~~~~lDfdDll~~~~~lL~~~~~~~~~~~~~~~~ilVDEfQDt~~~Q~~ll~~L~~~~~~l 237 (673)
T 1uaa_A 158 GERDRIFAHCYGLYDAHLKACNVLDFDDLILLPTLLLQANEEVRKRWQNKIRYLLVDEYQDTNTSQYELVKLLVGSRARF 237 (673)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHTCEEHHHHHHHHHHHHHHCHHHHHHHHTTCSEEEESCGGGCBHHHHHHHHHHHTTTCCE
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHHCCCCEE
T ss_conf 24899999999999999998699988999999999987496899999830868998660018987999999996689859
Q ss_pred EEECCCCCCCCEEECHHHHHHCC---HHHHHHHHHHC--CCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99278668886030287987121---18899999982--99656756742169877776522223583356543112246
Q 001718 580 VLVGDHCQLGPVIMCKKAARAGL---AQSLFERLVLL--GLKPIRLQVQYRMHPSLSEFPSNSFYEGTLQNGVTINERQS 654 (1021)
Q Consensus 580 ILVGD~~QLpPvv~s~~a~~~gl---~~SLFeRL~~~--g~~~i~L~~qYRmhp~I~~f~S~lFY~g~L~~~~~~~~r~~ 654 (1021)
++|||++|. .+++ ....|.++... +...+.|++|||+++.|++++|.+|..+..... .
T Consensus 238 ~~vGD~~Qs----------Iy~frga~~~~~~~~~~~~~~~~~~~L~~nyRs~~~I~~~an~~~~~~~~~~~----~--- 300 (673)
T 1uaa_A 238 TVVGDDDQS----------IYSWRGARPQNLVLLSQDFPALKVIKLEQNYRSSGRILKAANILIANNPHVFE----K--- 300 (673)
T ss_dssp EEECCGGGC----------CCGGGTBCTTHHHHHHHHSTTCEEECCCCBSSSCHHHHHHHHHHHHTSCCSSC----C---
T ss_pred EEEECCHHH----------HHHCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHCHHCCC----C---
T ss_conf 998175265----------54505998899999998689981997887889983999999999985531146----5---
Q ss_pred CCCCCCCCCCCCCEEEEEECCCEEECCCCCCCCCHHHHHHHHHHHHHHH-HCCCCCCCEEEECCCCHHHH
Q ss_conf 8999889999999499980794011156787569999999999999999-86999994899912502799
Q 001718 655 SGIDFPWPVPNRPMFFYVQMGQEEISASGTSYLNRTEAANVEKIVTTFL-RSGVVPSQIGVITPYEGQRA 723 (1021)
Q Consensus 655 ~~~~~~~p~~~~p~~f~~~~g~ee~~~~~~S~~N~~EA~~V~~iV~~Ll-~~gv~~~dIGIITPY~~Qv~ 723 (1021)
.. ........++.++... ....|+..|+..+..++ ..|+.+.+|+||++.+.|..
T Consensus 301 -~l-~~~~~~g~~i~~~~~~------------~~~~e~~~va~~I~~l~~~~g~~~~diaVL~r~~~~~~ 356 (673)
T 1uaa_A 301 -RL-FSELGYGAELKVLSAN------------NEEHEAERVTGELIAHHFVNKTQYKDYAILYRGNHQSR 356 (673)
T ss_dssp -CC-CBSSCCCCCBEEEECS------------SHHHHHHHHHHHHHHHHHHHCCCTTTEEEEESSSGGGT
T ss_pred -CC-CCCCCCCCCCEEEECC------------CHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECHHHHH
T ss_conf -44-5658889971488469------------98999999999999988615998047899972626489
No 10
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=1.00 E-value=1 Score=260.99 Aligned_cols=304 Identities=15% Similarity=0.155 Sum_probs=187.2
Q ss_pred CCCCCCHHHHHHHHHHHC-----CCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHCCCEE
Q ss_conf 999999999999999742-----991899877998177999999999999199919998294999999999998329848
Q 001718 387 GLPELNASQVFAVKSVLQ-----RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISATGLKV 461 (1021)
Q Consensus 387 ~~~~LN~sQ~~AV~~aL~-----~~l~LIqGPPGTGKT~Tia~iI~~L~~~~~~kILV~ApSN~AvD~L~erL~~~gl~i 461 (1021)
.+.+||+.|++|+..++. .++.+|.||||||||+++..++.+|...+..+|+++||||+|+++|.+++... .
T Consensus 22 ~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a~T~~Aa~~l~~~~~~~---~ 98 (459)
T 3upu_A 22 TFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLTKFIIEALISTGETGIILAAPTHAAKKILSKLSGKE---A 98 (459)
T ss_dssp CSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEESSHHHHHHHHHHHSSC---E
T ss_pred CCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHCCC---H
T ss_conf 6234899999999999998736897799996999989999999999998649960999667578999887661654---1
Q ss_pred EEECCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEECCCC
Q ss_conf 87512110013795013348888741161237889897774543235890589999999999999986126401000233
Q 001718 462 VRLCAKSREAVSSPVEHLTLHYQVRHLDTSEKSELHKLQQLKDEQGELSSSDEKKYKALKRATEREISQSADVICCTCVG 541 (1021)
Q Consensus 462 vRlg~~sre~i~~~v~~l~l~~~i~~~~~~~~~~L~kl~~lk~e~~~ls~~~~k~~~~l~~~~e~~iL~~a~VI~~T~~~ 541 (1021)
.++|..+..... ... ... .+..
T Consensus 99 -----------------~T~h~~~~~~~~---------------~~~----------------------~~~-~~~~--- 120 (459)
T 3upu_A 99 -----------------STIHSILKINPV---------------TYE----------------------ENV-LFEQ--- 120 (459)
T ss_dssp -----------------EEHHHHHTEEEE---------------ECS----------------------SCE-EEEE---
T ss_pred -----------------HHHHHHHCCCCC---------------CCC----------------------CCC-HHCC---
T ss_conf -----------------559988546855---------------455----------------------300-2000---
Q ss_pred CCCCCCCCCCCCEEEEECCCCCCCHH--HHHHHHCCCCEEEEECCCCCCCCEEECHHHHHHCCHHHHHHHHHHCCCCCEE
Q ss_conf 59987446887799997799999045--4431002686489927866888603028798712118899999982996567
Q 001718 542 AGDPRLANFRFRQVLIDESTQATEPE--CLIPLVLGAKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGLKPIR 619 (1021)
Q Consensus 542 a~~~~L~~~~Fd~VIIDEAsQa~E~e--~LIpL~~~~kklILVGD~~QLpPvv~s~~a~~~gl~~SLFeRL~~~g~~~i~ 619 (1021)
.......++++|||||+++++... .|+.+.....++++|||+.||+|+..... ...+ ..++. ......+.
T Consensus 121 --~~~~~~~~~~~iiiDE~~~~~~~~~~~l~~~~~~~~~~~~vGD~~Ql~~v~~g~~--~~~l-~~~~~---~~~~~~~~ 192 (459)
T 3upu_A 121 --KEVPDLAKCRVLICDEVSMYDRKLFKILLSTIPPWCTIIGIGDNKQIRPVDPGEN--TAYI-SPFFT---HKDFYQCE 192 (459)
T ss_dssp --CSCCCCSSCSEEEESCGGGCCHHHHHHHHHHSCTTCEEEEEECTTSCCCCCTTSC--SCCC-CGGGT---CTTEEEEE
T ss_pred --CCCCCCCCCCEEEEECCHHCCHHHHHHHHHHCCCCCEEEEECCHHHCCCCCCCCC--HHHH-HHHHH---CCCCCEEE
T ss_conf --3333346788999988011899999999984568988999887787688668862--4767-79985---68972875
Q ss_pred EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEECCCCCCCCCHHHHHHHHHHH
Q ss_conf 56742169877776522223583356543112246899988999999949998079401115678756999999999999
Q 001718 620 LQVQYRMHPSLSEFPSNSFYEGTLQNGVTINERQSSGIDFPWPVPNRPMFFYVQMGQEEISASGTSYLNRTEAANVEKIV 699 (1021)
Q Consensus 620 L~~qYRmhp~I~~f~S~lFY~g~L~~~~~~~~r~~~~~~~~~p~~~~p~~f~~~~g~ee~~~~~~S~~N~~EA~~V~~iV 699 (1021)
|++|||+++.|.++++.+.....+.. +.. ..+-+ +...+. .| +...+
T Consensus 193 L~~~~R~~~~I~~~a~~lr~g~~~~~------~~~----------~~~~v-~~~~~~-------------~~---~~~~i 239 (459)
T 3upu_A 193 LTEVKRSNAPIIDVATDVRNGKWIYD------KVV----------DGHGV-RGFTGD-------------TA---LRDFM 239 (459)
T ss_dssp CCCCCCCCCHHHHHHHHHHTTCCCCC------EEE----------TTEEE-EECCSS-------------SS---HHHHH
T ss_pred CEEEEECCCHHHHHHHHHHCCCCCCH------HCC----------CCCCE-EECCCH-------------HH---HHHHH
T ss_conf 50464089579999999975887610------024----------89983-755866-------------88---99999
Q ss_pred HHHHHCCCCCC---CEEEECCCCHHHHHHHHHHHHCCCH-----------------------------------------
Q ss_conf 99998699999---4899912502799999999851302-----------------------------------------
Q 001718 700 TTFLRSGVVPS---QIGVITPYEGQRAYIVNYMSRNGAL----------------------------------------- 735 (1021)
Q Consensus 700 ~~Ll~~gv~~~---dIGIITPY~~Qv~~I~~~L~~~~~l----------------------------------------- 735 (1021)
.........+. +++||++.++|+..+.+.+......
T Consensus 240 ~~~~~~~~~~~~~~~~aIL~rtN~~~~~~n~~lr~~~~~~~~~~~~gd~l~~~~~~~~~~~~~~~~~~~~~~~~~d~~~v 319 (459)
T 3upu_A 240 VNYFSIVKSLDDLFENRVMAFTNKSVDKLNSIIRKKIFETDKDFIVGEIIVMQEPLFKTYKIDGKPVSEIIFNNGQLVRI 319 (459)
T ss_dssp HHHHHHTTTCSCCTTEEEEESSHHHHHHHHHHHHHHHTTCCCSCCTTCEEEESSCEEEEEEETTEEEEEEEECTTCEEEE
T ss_pred HHHHHHCCCCCHHHCEEEEEEHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECHHHCCCCCCCCCCCEEEECCCCEEEE
T ss_conf 99997608943011169998117679999999999851668866788788850101034534787554089818988999
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 001718 736 -------------------------------------------------------------------------------- 735 (1021)
Q Consensus 736 -------------------------------------------------------------------------------- 735 (1021)
T Consensus 320 ~rv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 399 (459)
T 3upu_A 320 IEAEYTSTFVKARGVPGEYLIRHWDLTVETYGDDEYYREKIKIISSDEELYKFNLFLGKTAETYKNWNKGGKAPWSDFWD 399 (459)
T ss_dssp EEEEEEEEEECCTTSCSCEEEEEEEEEEEECSSSCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHSCCSSSSCCTHHHHH
T ss_pred EEECCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
T ss_conf 99604301112346676774799999996457876205899951787999999999999999987610256067899999
Q ss_pred -HH--HCCCCEEEEECCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCEEEECHHHCCCEEEE
Q ss_conf -24--2049729940015788511389997221589787678888683063001102443999
Q 001718 736 -RQ--QLYKEIEVASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVIL 795 (1021)
Q Consensus 736 -~~--~~~~~I~V~TVdsfQG~E~DvVIlS~VRSn~~~~iGFL~d~RRLNVALTRAK~~LiIV 795 (1021)
.. ...+.+.++|+|++||+|||.||+....... .....++|++|||+||||+.|+++
T Consensus 400 l~~~~~~~~~~~~~t~h~~kG~e~~~v~~~~~~~~~---~~~~~~~~~~yva~tRa~~~l~~~ 459 (459)
T 3upu_A 400 AKSQFSKVKALPASTFHKAQGMSVDRAFIYTPCIHY---ADVELAQQLLYVGVTRGRYDVFYV 459 (459)
T ss_dssp HHTTBCCEEESSEEETGGGTTCCEEEEEEECGGGGG---SCHHHHHHHHHHHHHHEEEEEEEC
T ss_pred HHHHHHHCCCEEEEEEEECCCCCCCEEEEECCCCCC---CCHHHHHHEEEEEECCEEEEEEEC
T ss_conf 999876158579998882367778889995488887---686887540465521230479959
Done!