BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001719
(1021 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 198 bits (504), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 175/549 (31%), Positives = 247/549 (44%), Gaps = 109/549 (19%)
Query: 461 GSFRMPIHSHQKLATLDVSTNFFRGHIPV------------------EIGTYLSGLMD-- 500
G F I + +L L++S+N F G IP EI +LSG D
Sbjct: 234 GDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTL 293
Query: 501 --LNLSRNAFNGSIPSSFA-------------------------DMKMLKSLDISYNQLT 533
L+LS N F G++P F M+ LK LD+S+N+ +
Sbjct: 294 TGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFS 353
Query: 534 GEIPDRMAIGCFSLEILALSNNNLQGHIFSK--KFNLTNLMRLQLDGNKFIGEIPKSLSK 591
GE+P+ + SL L LS+NN G I + L L L N F G+IP +LS
Sbjct: 354 GELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSN 413
Query: 592 CYLLGGLYLSDNHLSGKIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLDYLKILDLSNN 651
C L L+LS N+LSG IP LG+LS L D+ + N LEG IP E + L+ L L N
Sbjct: 414 CSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFN 473
Query: 652 TIFGTLPSCFSPAYIEEIHLSKNKIEGRLESIIHYSPYLMTLDLSYNCLHGSIPTWIDRL 711
+ G +PS S L + LS N L G IP WI RL
Sbjct: 474 DLTGEIPSGLSNCT-----------------------NLNWISLSNNRLTGEIPKWIGRL 510
Query: 712 PQLSYLLLANNYIEGEIPIQICQLKEVRLIDLSHNNLSGHIPPCLVNTALNEGYHEAVAP 771
L+ L L+NN G IP ++ + + +DL+ N +G IP + +
Sbjct: 511 ENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQS---------GK 561
Query: 772 ISSSSDDASTYVLPSVAPNG--------------SPIGEEETVQFTTKN----MSYYYQG 813
I+++ YV + +G I E+ + +T+N S Y G
Sbjct: 562 IAANFIAGKRYVY--IKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGG 619
Query: 814 RILM------SMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQI 867
SM +D+S N L+G IP +IG + + LNL HN+++G+IP +L+ +
Sbjct: 620 HTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGL 679
Query: 868 ESLDLSYNLLLGKIPPQLIVLNTLAVFRVANNNLSGKIPDRVAQFSTFEEDSYEGNPFLC 927
LDLS N L G+IP + L L ++NNNLSG IP+ + QF TF + NP LC
Sbjct: 680 NILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE-MGQFETFPPAKFLNNPGLC 738
Query: 928 GLPLSKSCD 936
G PL + CD
Sbjct: 739 GYPLPR-CD 746
Score = 139 bits (350), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 134/450 (29%), Positives = 224/450 (49%), Gaps = 49/450 (10%)
Query: 496 SGLMDLNLSRNAFNGSIPS--SFADMKMLKSLDISYNQLTGEIPDRMAIGCF--SLEILA 551
+ L L+LSRN+ +G + + S LK L++S N L + P +++ G SLE+L
Sbjct: 97 ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTL--DFPGKVSGGLKLNSLEVLD 154
Query: 552 LSNN-----NLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPKSLSKCYLLGGLYLSDNHLS 606
LS N N+ G + S L L + GNK G++ +S+C L L +S N+ S
Sbjct: 155 LSANSISGANVVGWVLSD--GCGELKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFS 210
Query: 607 GKIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLDYLKILDLSNNTIFGTLPSCFSPAYI 666
IP +LG+ SAL+ + + N L G LK+L++S+N G +P +
Sbjct: 211 TGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP-LPLKSL 268
Query: 667 EEIHLSKNKIEGRLESIIHYSPYLMT-LDLSYNCLHGSIPTWIDRLPQLSYLLLANNYIE 725
+ + L++NK G + + + +T LDLS N +G++P + L L L++N
Sbjct: 269 QYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFS 328
Query: 726 GEIPIQ-ICQLKEVRLIDLSHNNLSGHIPPCLVNTALNEGYHEAVAPISSSSDDASTYVL 784
GE+P+ + +++ ++++DLS N SG +P L N + ++ + SS++ S +L
Sbjct: 329 GELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLS------ASLLTLDLSSNNFSGPIL 382
Query: 785 PSVAPNGSPIGEEETVQ---FTTK--------------NMSY-YYQGRI------LMSMS 820
P++ N +E +Q FT K ++S+ Y G I L +
Sbjct: 383 PNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLR 442
Query: 821 GIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLLGK 880
+ L N L GEIP ++ Y+ + L L N+LTG IP+ SN + + LS N L G+
Sbjct: 443 DLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGE 502
Query: 881 IPPQLIVLNTLAVFRVANNNLSGKIPDRVA 910
IP + L LA+ +++NN+ SG IP +
Sbjct: 503 IPKWIGRLENLAILKLSNNSFSGNIPAELG 532
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 198 bits (504), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 176/549 (32%), Positives = 249/549 (45%), Gaps = 109/549 (19%)
Query: 461 GSFRMPIHSHQKLATLDVSTNFFRGHIPV------------------EIGTYLSGLMD-- 500
G F I + +L L++S+N F G IP EI +LSG D
Sbjct: 237 GDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTL 296
Query: 501 --LNLSRNAFNGSIPSSFA-------------------------DMKMLKSLDISYNQLT 533
L+LS N F G++P F M+ LK LD+S+N+ +
Sbjct: 297 TGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFS 356
Query: 534 GEIPDRMAIGCFSLEILALSNNNLQGHIFSK--KFNLTNLMRLQLDGNKFIGEIPKSLSK 591
GE+P+ + SL L LS+NN G I + L L L N F G+IP +LS
Sbjct: 357 GELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSN 416
Query: 592 CYLLGGLYLSDNHLSGKIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLDYLKILDLSNN 651
C L L+LS N+LSG IP LG+LS L D+ + N LEG IP E L Y+K L
Sbjct: 417 CSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQE---LMYVKTL----- 468
Query: 652 TIFGTLPSCFSPAYIEEIHLSKNKIEGRLESIIHYSPYLMTLDLSYNCLHGSIPTWIDRL 711
E + L N + G + S + L + LS N L G IP WI RL
Sbjct: 469 ---------------ETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRL 513
Query: 712 PQLSYLLLANNYIEGEIPIQICQLKEVRLIDLSHNNLSGHIPPCLVNTALNEGYHEAVAP 771
L+ L L+NN G IP ++ + + +DL+ N +G IP + +
Sbjct: 514 ENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQS---------GK 564
Query: 772 ISSSSDDASTYVLPSVAPNG--------------SPIGEEETVQFTTKN----MSYYYQG 813
I+++ YV + +G I E+ + +T+N S Y G
Sbjct: 565 IAANFIAGKRYVY--IKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGG 622
Query: 814 RILM------SMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQI 867
SM +D+S N L+G IP +IG + + LNL HN+++G+IP +L+ +
Sbjct: 623 HTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGL 682
Query: 868 ESLDLSYNLLLGKIPPQLIVLNTLAVFRVANNNLSGKIPDRVAQFSTFEEDSYEGNPFLC 927
LDLS N L G+IP + L L ++NNNLSG IP+ + QF TF + NP LC
Sbjct: 683 NILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE-MGQFETFPPAKFLNNPGLC 741
Query: 928 GLPLSKSCD 936
G PL + CD
Sbjct: 742 GYPLPR-CD 749
Score = 139 bits (349), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 134/451 (29%), Positives = 224/451 (49%), Gaps = 49/451 (10%)
Query: 496 SGLMDLNLSRNAFNGSIPS--SFADMKMLKSLDISYNQLTGEIPDRMAIGCF--SLEILA 551
+ L L+LSRN+ +G + + S LK L++S N L + P +++ G SLE+L
Sbjct: 100 ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTL--DFPGKVSGGLKLNSLEVLD 157
Query: 552 LSNN-----NLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPKSLSKCYLLGGLYLSDNHLS 606
LS N N+ G + S L L + GNK G++ +S+C L L +S N+ S
Sbjct: 158 LSANSISGANVVGWVLSD--GCGELKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFS 213
Query: 607 GKIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLDYLKILDLSNNTIFGTLPSCFSPAYI 666
IP +LG+ SAL+ + + N L G LK+L++S+N G +P +
Sbjct: 214 TGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP-LPLKSL 271
Query: 667 EEIHLSKNKIEGRLESIIHYSPYLMT-LDLSYNCLHGSIPTWIDRLPQLSYLLLANNYIE 725
+ + L++NK G + + + +T LDLS N +G++P + L L L++N
Sbjct: 272 QYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFS 331
Query: 726 GEIPIQ-ICQLKEVRLIDLSHNNLSGHIPPCLVNTALNEGYHEAVAPISSSSDDASTYVL 784
GE+P+ + +++ ++++DLS N SG +P L N + ++ + SS++ S +L
Sbjct: 332 GELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLS------ASLLTLDLSSNNFSGPIL 385
Query: 785 PSVAPNGSPIGEEETVQ---FTTK--------------NMSY-YYQGRI------LMSMS 820
P++ N +E +Q FT K ++S+ Y G I L +
Sbjct: 386 PNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLR 445
Query: 821 GIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLLGK 880
+ L N L GEIP ++ Y+ + L L N+LTG IP+ SN + + LS N L G+
Sbjct: 446 DLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGE 505
Query: 881 IPPQLIVLNTLAVFRVANNNLSGKIPDRVAQ 911
IP + L LA+ +++NN+ SG IP +
Sbjct: 506 IPKWIGRLENLAILKLSNNSFSGNIPAELGD 536
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 70.9 bits (172), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 72/254 (28%), Positives = 111/254 (43%), Gaps = 30/254 (11%)
Query: 688 PYLMTLDLS-YNCLHGSIPTWIDRLPQLSYLLLANNYIEGEIPIQICQLKEVRLIDLSHN 746
PYL L + N L G IP I +L QL YL + + + G IP + Q+K + +D S+N
Sbjct: 76 PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYN 135
Query: 747 NLSGHIPPC------LVNTALNEGYHEAVAPISSSSDDASTYVLPSVAPNGSPIGEEETV 800
LSG +PP LV + P S S + + S+ + + + +
Sbjct: 136 ALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGS---FSKLFTSMTISRNRLTGKIPP 192
Query: 801 QFTTKNMSYYYQGRILMSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLT---GTI 857
F N+++ +DLS N L G+ G + ++L+ N+L G +
Sbjct: 193 TFANLNLAF------------VDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKV 240
Query: 858 PTTFSNLKQIESLDLSYNLLLGKIPPQLIVLNTLAVFRVANNNLSGKIPDRVAQFSTFEE 917
+ K + LDL N + G +P L L L V+ NNL G+IP + F+
Sbjct: 241 GLS----KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDV 295
Query: 918 DSYEGNPFLCGLPL 931
+Y N LCG PL
Sbjct: 296 SAYANNKCLCGSPL 309
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 69/251 (27%), Positives = 105/251 (41%), Gaps = 53/251 (21%)
Query: 412 GTFPKFLYHQHDLKNVDLSHLNLSGKFPNWLVEXXXXXXXXXXXXXXXFGSFRMPIHSHQ 471
G P + L + ++H N+SG P++L + +
Sbjct: 91 GPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQI-------------------------K 125
Query: 472 KLATLDVSTNFFRGHIPVEIGTYLSGLMDLNLSRNAFNGSIPSSFADM-KMLKSLDISYN 530
L TLD S N G +P I + L L+ + N +G+IP S+ K+ S+ IS N
Sbjct: 126 TLVTLDFSYNALSGTLPPSISS-LPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRN 184
Query: 531 QLTGEIPDRMAIGCFSLEILALSNNNLQG---------------HIF--SKKFNL----- 568
+LTG+IP A +L + LS N L+G H+ S F+L
Sbjct: 185 RLTGKIPPTFA--NLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGL 242
Query: 569 -TNLMRLQLDGNKFIGEIPKSLSKCYLLGGLYLSDNHLSGKIPRWLGNLSALEDIIMPNN 627
NL L L N+ G +P+ L++ L L +S N+L G+IP+ GNL + NN
Sbjct: 243 SKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANN 301
Query: 628 NLEGPIPIEFC 638
P+ C
Sbjct: 302 KCLCGSPLPAC 312
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 62/219 (28%), Positives = 96/219 (43%), Gaps = 27/219 (12%)
Query: 561 IFSKKFNLTNLMRLQLDG-NKFIGEIPKSLSKCYLLGGLYLSDNHLSGKIPRWLGNLSAL 619
I S NL L L + G N +G IP +++K L LY++ ++SG IP +L + L
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 620 EDIIMPNNNLEGPIPIEFCQLDYLKILDLSNNTIFGTLPSCFS--PAYIEEIHLSKNKIE 677
+ N L G +P L L + N I G +P + + +S+N++
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187
Query: 678 GRLESIIHYSPYLMTLDLSYNCLHG--SIPTWIDRLPQ---------------------L 714
G++ + L +DLS N L G S+ D+ Q L
Sbjct: 188 GKIPPTFA-NLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNL 246
Query: 715 SYLLLANNYIEGEIPIQICQLKEVRLIDLSHNNLSGHIP 753
+ L L NN I G +P + QLK + +++S NNL G IP
Sbjct: 247 NGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 70/272 (25%), Positives = 107/272 (39%), Gaps = 60/272 (22%)
Query: 306 VPKDYRCLRKLNTLYLGGIAMIDGSKVLQSIGSLPSLKTLYLLFTNFKGTIVNQELHNFT 365
+P L LN LY+GGI + G + +I L L LY+ TN G I + L
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVG-PIPPAIAKLTQLHYLYITHTNVSGAIPD-FLSQIK 125
Query: 366 NLEELLLVKSDLHVSQLLQSIASFTSLKYLSIRGCVLKGALHGQDGGTFPKFLYHQHDLK 425
L L + L L SI+S +L ++ G + GA+ G+F K
Sbjct: 126 TLVTLDFSYNALS-GTLPPSISSLPNLVGITFDGNRISGAIP-DSYGSFSKL------FT 177
Query: 426 NVDLSHLNLSGKFPNWLVEXXXXXXXXXXXXXXXFGSFRMPIHSHQKLATLDVSTNFFRG 485
++ +S L+GK P P ++ LA +D+S N G
Sbjct: 178 SMTISRNRLTGKIP--------------------------PTFANLNLAFVDLSRNMLEG 211
Query: 486 HIPVEIGT-------YLS---------------GLMDLNLSRNAFNGSIPSSFADMKMLK 523
V G+ +L+ L L+L N G++P +K L
Sbjct: 212 DASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLH 271
Query: 524 SLDISYNQLTGEIPDRMAIGCFSLEILALSNN 555
SL++S+N L GEIP + F ++ A +NN
Sbjct: 272 SLNVSFNNLCGEIPQGGNLQRF--DVSAYANN 301
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 56/119 (47%), Gaps = 12/119 (10%)
Query: 842 RIRALNLSHNNLTGT--IPTTFSNLKQIESLDLS-YNLLLGKIPPQLIVLNTLAVFRVAN 898
R+ L+LS NL IP++ +NL + L + N L+G IPP + L L + +
Sbjct: 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITH 110
Query: 899 NNLSGKIPDRVAQFSTFEEDSYEGNPFLCGLPLSKSC---------DDNGLTTATPEAY 948
N+SG IPD ++Q T + N LP S S D N ++ A P++Y
Sbjct: 111 TNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSY 169
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 46/100 (46%), Gaps = 1/100 (1%)
Query: 832 EIPTQIGYLTRIRALNLSH-NNLTGTIPTTFSNLKQIESLDLSYNLLLGKIPPQLIVLNT 890
IP+ + L + L + NNL G IP + L Q+ L +++ + G IP L + T
Sbjct: 67 PIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKT 126
Query: 891 LAVFRVANNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGLP 930
L + N LSG +P ++ +++GN +P
Sbjct: 127 LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP 166
Score = 33.5 bits (75), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 10/66 (15%)
Query: 25 EGCLEQERSALLQLKHFFNDDQRLQNWVDAADDENYSDCCQ--WERVECNKTTG--RVIK 80
E C Q++ ALLQ+K + L +W+ +DCC W V C+ T RV
Sbjct: 1 ELCNPQDKQALLQIKKDLGNPTTLSSWLPT------TDCCNRTWLGVLCDTDTQTYRVNN 54
Query: 81 LDLGDI 86
LDL +
Sbjct: 55 LDLSGL 60
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 75/305 (24%), Positives = 125/305 (40%), Gaps = 45/305 (14%)
Query: 496 SGLMDLNLSRNAFNGSIP-SSFADMKMLKSLDISYNQLTGEI-PDRMAIGCFSLEILALS 553
SG+ DL+ ++ P +++++ D+ + EI PD + + +I L
Sbjct: 11 SGIPDLDSLPPTYSAMCPFGCHCHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELR 70
Query: 554 NNNLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPKSLSKCYLLGGLYLSDNHLS------- 606
++ +G L +L L L NK K+ S L LY+S NHL
Sbjct: 71 KDDFKG--------LQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP 122
Query: 607 -------------GKIPRWL-GNLSALEDIIMPNNNLEG----PIPIEFCQLDYLKILDL 648
K+P+ + L + I M N LE P + +L+YL+I +
Sbjct: 123 SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEA 182
Query: 649 SNNTIFGTLPSCFSPAYIEEIHLSKNKIEG-RLESIIHYSPYLMTLDLSYNCLHGSIPTW 707
I LP + E+HL NKI+ LE ++ YS L L L +N +
Sbjct: 183 KLTGIPKDLPETLN-----ELHLDHNKIQAIELEDLLRYS-KLYRLGLGHNQIRMIENGS 236
Query: 708 IDRLPQLSYLLLANNYIEGEIPIQICQLKEVRLIDLSHNNLS--GHIPPCLVNTALNEGY 765
+ LP L L L NN + +P + LK ++++ L NN++ G C V + Y
Sbjct: 237 LSFLPTLRELHLDNNKL-SRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAY 295
Query: 766 HEAVA 770
+ ++
Sbjct: 296 YNGIS 300
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 66/259 (25%), Positives = 105/259 (40%), Gaps = 41/259 (15%)
Query: 519 MKMLKSLDISYNQLTGEIPDRMAIGCFSLEILALSNNNLQGHIFSKKF-NLTNLMRLQLD 577
+++++ D+ ++ ++P A+ L L NN + I F NL NL L L
Sbjct: 33 LRVVQCSDLGLEKVPKDLPPDTAL-------LDLQNNKIT-EIKDGDFKNLKNLHTLILI 84
Query: 578 GNKFIGEIPKSLSKCYLLGGLYLSDNHLS---GKIPRWLGNLSALEDIIMPN-----NNL 629
NK P + + L LYLS N L K+P+ L L E+ I N L
Sbjct: 85 NNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGL 144
Query: 630 EGPIPIEFC------------------QLDYLKILDLSNNTIFGTLPSCFSPAYIEEIHL 671
I +E +L Y++I D + TI LP + E+HL
Sbjct: 145 NQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLT-----ELHL 199
Query: 672 SKNKIEGRLESIIHYSPYLMTLDLSYNCLHGSIPTWIDRLPQLSYLLLANNYIEGEIPIQ 731
NKI + + L L LS+N + + P L L L NN + ++P
Sbjct: 200 DGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGG 258
Query: 732 ICQLKEVRLIDLSHNNLSG 750
+ K ++++ L +NN+S
Sbjct: 259 LADHKYIQVVYLHNNNISA 277
Score = 33.1 bits (74), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 54/213 (25%), Positives = 78/213 (36%), Gaps = 46/213 (21%)
Query: 495 LSGLMDLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGEIPDRMA------------- 541
L L L L N + P +FA + L+ L +S NQL E+P++M
Sbjct: 75 LKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMPKTLQELRVHENEI 133
Query: 542 ------------------IGCFSLEILALSNNNLQG-----HIFSKKFNLT--------N 570
+G L+ + N QG +I N+T +
Sbjct: 134 TKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPS 193
Query: 571 LMRLQLDGNKFIGEIPKSLSKCYLLGGLYLSDNHLSGKIPRWLGNLSALEDIIMPNNNLE 630
L L LDGNK SL L L LS N +S L N L ++ + NN L
Sbjct: 194 LTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV 253
Query: 631 GPIPIEFCQLDYLKILDLSNNTIFGTLPSCFSP 663
+P Y++++ L NN I + F P
Sbjct: 254 K-VPGGLADHKYIQVVYLHNNNISAIGSNDFCP 285
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 66/259 (25%), Positives = 105/259 (40%), Gaps = 41/259 (15%)
Query: 519 MKMLKSLDISYNQLTGEIPDRMAIGCFSLEILALSNNNLQGHIFSKKF-NLTNLMRLQLD 577
+++++ D+ ++ ++P A+ L L NN + I F NL NL L L
Sbjct: 33 LRVVQCSDLGLEKVPKDLPPDTAL-------LDLQNNKIT-EIKDGDFKNLKNLHTLILI 84
Query: 578 GNKFIGEIPKSLSKCYLLGGLYLSDNHLS---GKIPRWLGNLSALEDIIMPN-----NNL 629
NK P + + L LYLS N L K+P+ L L E+ I N L
Sbjct: 85 NNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGL 144
Query: 630 EGPIPIEFC------------------QLDYLKILDLSNNTIFGTLPSCFSPAYIEEIHL 671
I +E +L Y++I D + TI LP + E+HL
Sbjct: 145 NQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLT-----ELHL 199
Query: 672 SKNKIEGRLESIIHYSPYLMTLDLSYNCLHGSIPTWIDRLPQLSYLLLANNYIEGEIPIQ 731
NKI + + L L LS+N + + P L L L NN + ++P
Sbjct: 200 DGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGG 258
Query: 732 ICQLKEVRLIDLSHNNLSG 750
+ K ++++ L +NN+S
Sbjct: 259 LADHKYIQVVYLHNNNISA 277
Score = 32.7 bits (73), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 54/213 (25%), Positives = 78/213 (36%), Gaps = 46/213 (21%)
Query: 495 LSGLMDLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGEIPDRMA------------- 541
L L L L N + P +FA + L+ L +S NQL E+P++M
Sbjct: 75 LKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMPKTLQELRVHENEI 133
Query: 542 ------------------IGCFSLEILALSNNNLQG-----HIFSKKFNLT--------N 570
+G L+ + N QG +I N+T +
Sbjct: 134 TKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPS 193
Query: 571 LMRLQLDGNKFIGEIPKSLSKCYLLGGLYLSDNHLSGKIPRWLGNLSALEDIIMPNNNLE 630
L L LDGNK SL L L LS N +S L N L ++ + NN L
Sbjct: 194 LTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV 253
Query: 631 GPIPIEFCQLDYLKILDLSNNTIFGTLPSCFSP 663
+P Y++++ L NN I + F P
Sbjct: 254 K-VPGGLADHKYIQVVYLHNNNISAIGSNDFCP 285
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 38.5 bits (88), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 86/192 (44%), Gaps = 4/192 (2%)
Query: 501 LNLSRNAFNGSIPS-SFADMKMLKSLDISYNQLTGEIPDRMAIGCFSLEILALSNNNLQG 559
L+L N + S+PS +F + L+ L ++ N+L +P + +LE L +++N LQ
Sbjct: 42 LDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQA 99
Query: 560 HIFSKKFNLTNLMRLQLDGNKFIGEIPKSLSKCYLLGGLYLSDNHLSGKIPRWLGNLSAL 619
L NL L+LD N+ P+ L L L N L L++L
Sbjct: 100 LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSL 159
Query: 620 EDIIMPNNNLEGPIPIEFCQLDYLKILDLSNNTIFGTLPSCF-SPAYIEEIHLSKNKIEG 678
+++ + NN L+ F +L LK L L NN + F S ++ + L +N +
Sbjct: 160 KELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDC 219
Query: 679 RLESIIHYSPYL 690
II+ + +L
Sbjct: 220 TCNGIIYMAKWL 231
Score = 37.7 bits (86), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 50/111 (45%), Gaps = 2/111 (1%)
Query: 471 QKLATLDVSTNFFRGHIPVEIGTYLSGLMDLNLSRNAFNGSIPSSFADMKMLKSLDISYN 530
+ L TL V+ N + +P+ + L L +L L RN P F + L L + YN
Sbjct: 85 KNLETLWVTDNKLQA-LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYN 143
Query: 531 QLTGEIPDRMAIGCFSLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNKF 581
+L +P + SL+ L L NN L+ LT L L+LD N+
Sbjct: 144 ELQS-LPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQL 193
Score = 35.4 bits (80), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 73/176 (41%), Gaps = 3/176 (1%)
Query: 573 RLQLDGNKFIGEIPKSLSKCYLLGGLYLSDNHLSGKIPRWLGNLSALEDIIMPNNNLEG- 631
+L L NK K+ + L LYL+DN L L LE + + +N L+
Sbjct: 41 KLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQAL 100
Query: 632 PIPIEFCQLDYLKILDLSNNTIFGTLPSCF-SPAYIEEIHLSKNKIEGRLESIIHYSPYL 690
PI + F QL L L L N + P F S + + L N+++ + + L
Sbjct: 101 PIGV-FDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSL 159
Query: 691 MTLDLSYNCLHGSIPTWIDRLPQLSYLLLANNYIEGEIPIQICQLKEVRLIDLSHN 746
L L N L D+L +L L L NN ++ L++++++ L N
Sbjct: 160 KELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
Score = 30.4 bits (67), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 39/88 (44%), Gaps = 1/88 (1%)
Query: 822 IDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLLGKI 881
+DL NKL+ LT++R L L+ N L F LK +E+L ++ N L
Sbjct: 42 LDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALP 101
Query: 882 PPQLIVLNTLAVFRVANNNLSGKIPDRV 909
L LA R+ N L +P RV
Sbjct: 102 IGVFDQLVNLAELRLDRNQLKS-LPPRV 128
Score = 30.0 bits (66), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 53/116 (45%), Gaps = 8/116 (6%)
Query: 816 LMSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 875
L++++ + L N+L P LT++ L+L +N L F L ++ L L YN
Sbjct: 108 LVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRL-YN 166
Query: 876 LLLGKIPPQLI-VLNTLAVFRVANNNLSGKIPDRVAQFSTFEEDSY---EGNPFLC 927
L ++P L L ++ NN L ++P+ F + E+ + NP+ C
Sbjct: 167 NQLKRVPEGAFDKLTELKTLKLDNNQLK-RVPE--GAFDSLEKLKMLQLQENPWDC 219
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 38.1 bits (87), Expect = 0.022, Method: Composition-based stats.
Identities = 46/160 (28%), Positives = 75/160 (46%), Gaps = 7/160 (4%)
Query: 493 TYLSGLMDLNLSRNAFNGSI-PSSFADMKMLKSLDISYNQLTGEIPDRMAIGCFSLEILA 551
T L+ L L+LS NA + P++F + L +L + L E+ + G +L+ L
Sbjct: 76 TGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCGLQ-ELGPGLFRGLAALQYLY 134
Query: 552 LSNNNLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPK-SLSKCYLLGGLYLSDNHLSGKIP 610
L +NNLQ + +L NL L L GN+ I +P+ + + L L L NH++ P
Sbjct: 135 LQDNNLQALPDNTFRDLGNLTHLFLHGNR-IPSVPEHAFRGLHSLDRLLLHQNHVARVHP 193
Query: 611 RWLGNLSALEDIIMPNNNLE---GPIPIEFCQLDYLKILD 647
+L L + + NNL + + L YL++ D
Sbjct: 194 HAFRDLGRLMTLYLFANNLSMLPAEVLVPLRSLQYLRLND 233
Score = 33.5 bits (75), Expect = 0.61, Method: Composition-based stats.
Identities = 29/87 (33%), Positives = 45/87 (51%), Gaps = 14/87 (16%)
Query: 288 LSNLEELDMTNNAINNLVVPKDYRCLRKLNTLYLGGIAMIDGSKVLQSIG-----SLPSL 342
L+ LE+LD+++NA +V P +R L L+TL+L LQ +G L +L
Sbjct: 78 LTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCG-------LQELGPGLFRGLAAL 130
Query: 343 KTLYLLFTNFKGTIVN--QELHNFTNL 367
+ LYL N + N ++L N T+L
Sbjct: 131 QYLYLQDNNLQALPDNTFRDLGNLTHL 157
Score = 30.0 bits (66), Expect = 6.7, Method: Composition-based stats.
Identities = 50/185 (27%), Positives = 78/185 (42%), Gaps = 14/185 (7%)
Query: 573 RLQLDGNKFIGEIPK-SLSKCYLLGGLYLSDNHLSGKIPRWLGNLSALEDIIMPNN-NLE 630
R+ L GN+ I +P S C L L+L N L+G L+ LE + + +N L
Sbjct: 35 RIFLHGNR-ISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLR 93
Query: 631 GPIPIEFCQLDYLKILDLSNNTIFGTLPSCFSP-AYIEEIHLSKNKIEGRLESIIHYSPY 689
P F L +L L L + P F A ++ ++L N ++ ++ +
Sbjct: 94 VVDPTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNT-----F 148
Query: 690 LMTLDLSYNCLHG----SIPTWIDR-LPQLSYLLLANNYIEGEIPIQICQLKEVRLIDLS 744
+L++ LHG S+P R L L LLL N++ P L + + L
Sbjct: 149 RDLGNLTHLFLHGNRIPSVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLF 208
Query: 745 HNNLS 749
NNLS
Sbjct: 209 ANNLS 213
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 38.1 bits (87), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 78/282 (27%), Positives = 119/282 (42%), Gaps = 42/282 (14%)
Query: 494 YLSGLMDLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGEIPDRMAIGCFSLEILALS 553
YL+ L +N S N P ++ L + ++ NQ+ P +L L L
Sbjct: 61 YLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP---LANLTNLTGLTLF 115
Query: 554 NNNLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPKSLSKCYLLGGLYLSDNHLSGKIPRWL 613
NN + NLTNL RL+L N I +I +LS L L S N ++ P L
Sbjct: 116 NNQITD--IDPLKNLTNLNRLELSSNT-ISDI-SALSGLTSLQQLSFSSNQVTDLKP--L 169
Query: 614 GNLSALEDIIMPNNNLEGPIPIEFCQLDYLKILDLSNNTIFGTLPSCFSPAYIEEIHLSK 673
NL+ LE + + +N + I + +L L+ L +NN I P ++E+ L+
Sbjct: 170 ANLTTLERLDISSNKVSD-ISV-LAKLTNLESLIATNNQISDITPLGIL-TNLDELSLNG 226
Query: 674 NKIE--GRLESIIHYSPYLMTLDLSYNCLHGSIPTWIDRLPQLSYLLLANNYIEGEIPIQ 731
N+++ G L S+ + L LDL+ N + P + L +L+ L L N I P
Sbjct: 227 NQLKDIGTLASLTN----LTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP-- 278
Query: 732 ICQLKEVRLIDLSHNNLSGHIPPCLVNTALNEGYHEAVAPIS 773
L+G L N LNE E ++PIS
Sbjct: 279 ----------------LAGLT--ALTNLELNENQLEDISPIS 302
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 23/36 (63%)
Query: 176 DIKGLDSLSNLEELDMSYNAIDNLVVPQGLERLSTL 211
DI L SL+NL +LD++ N I NL GL +L+ L
Sbjct: 231 DIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTEL 266
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 38.1 bits (87), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 80/283 (28%), Positives = 119/283 (42%), Gaps = 44/283 (15%)
Query: 494 YLSGLMDLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGEIPDRMAIGCFS-LEILAL 552
YL+ L +N S N P + K +DI N +I D + + L L L
Sbjct: 61 YLNNLTQINFSNNQLTDITPLK----NLTKLVDILMNN--NQIADITPLANLTNLTGLTL 114
Query: 553 SNNNLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPKSLSKCYLLGGLYLSDNHLSGKIPRW 612
NN + NLTNL RL+L N I +I +LS L L S N ++ P
Sbjct: 115 FNNQITD--IDPLKNLTNLNRLELSSNT-ISDI-SALSGLTSLQQLSFSSNQVTDLKP-- 168
Query: 613 LGNLSALEDIIMPNNNLEGPIPIEFCQLDYLKILDLSNNTIFGTLPSCFSPAYIEEIHLS 672
L NL+ LE + + +N + I + +L L+ L +NN I P ++E+ L+
Sbjct: 169 LANLTTLERLDISSNKVSD-ISV-LAKLTNLESLIATNNQISDITPLGIL-TNLDELSLN 225
Query: 673 KNKIE--GRLESIIHYSPYLMTLDLSYNCLHGSIPTWIDRLPQLSYLLLANNYIEGEIPI 730
N+++ G L S+ + L LDL+ N + P + L +L+ L L N I P
Sbjct: 226 GNQLKDIGTLASLTN----LTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP- 278
Query: 731 QICQLKEVRLIDLSHNNLSGHIPPCLVNTALNEGYHEAVAPIS 773
L+G L N LNE E ++PIS
Sbjct: 279 -----------------LAGLT--ALTNLELNENQLEDISPIS 302
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 23/36 (63%)
Query: 176 DIKGLDSLSNLEELDMSYNAIDNLVVPQGLERLSTL 211
DI L SL+NL +LD++ N I NL GL +L+ L
Sbjct: 231 DIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTEL 266
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 37.7 bits (86), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 80/283 (28%), Positives = 119/283 (42%), Gaps = 44/283 (15%)
Query: 494 YLSGLMDLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGEIPDRMAIGCFS-LEILAL 552
YL+ L +N S N P + K +DI N +I D + + L L L
Sbjct: 61 YLNNLTQINFSNNQLTDITPLK----NLTKLVDILMNN--NQIADITPLANLTNLTGLTL 114
Query: 553 SNNNLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPKSLSKCYLLGGLYLSDNHLSGKIPRW 612
NN + NLTNL RL+L N I +I +LS L L S N ++ P
Sbjct: 115 FNNQITD--IDPLKNLTNLNRLELSSNT-ISDI-SALSGLTSLQQLNFSSNQVTDLKP-- 168
Query: 613 LGNLSALEDIIMPNNNLEGPIPIEFCQLDYLKILDLSNNTIFGTLPSCFSPAYIEEIHLS 672
L NL+ LE + + +N + I + +L L+ L +NN I P ++E+ L+
Sbjct: 169 LANLTTLERLDISSNKVSD-ISV-LAKLTNLESLIATNNQISDITPLGIL-TNLDELSLN 225
Query: 673 KNKIE--GRLESIIHYSPYLMTLDLSYNCLHGSIPTWIDRLPQLSYLLLANNYIEGEIPI 730
N+++ G L S+ + L LDL+ N + P + L +L+ L L N I P
Sbjct: 226 GNQLKDIGTLASLTN----LTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP- 278
Query: 731 QICQLKEVRLIDLSHNNLSGHIPPCLVNTALNEGYHEAVAPIS 773
L+G L N LNE E ++PIS
Sbjct: 279 -----------------LAGLT--ALTNLELNENQLEDISPIS 302
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 23/36 (63%)
Query: 176 DIKGLDSLSNLEELDMSYNAIDNLVVPQGLERLSTL 211
DI L SL+NL +LD++ N I NL GL +L+ L
Sbjct: 231 DIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTEL 266
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 37.7 bits (86), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 55/97 (56%), Gaps = 9/97 (9%)
Query: 495 LSGLMDLNLSRNAFNGSIPSS-FADMKMLKSLDISYNQLTGEIPDRMAIGCFSLEILALS 553
L+ L+ LNLS+N F GSI S F ++ L+ LD+SYN + + D+ +G +L+ LAL
Sbjct: 322 LTHLLKLNLSQN-FLGSIDSRMFENLDKLEVLDLSYNHIRA-LGDQSFLGLPNLKELALD 379
Query: 554 NNNLQG---HIFSKKFNLTNLMRLQLDGNKFIGEIPK 587
N L+ IF + LT+L ++ L N + P+
Sbjct: 380 TNQLKSVPDGIFDR---LTSLQKIWLHTNPWDCSCPR 413
Score = 36.2 bits (82), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 42/92 (45%), Gaps = 2/92 (2%)
Query: 840 LTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLLGKIPPQLIVLNTLAVFRVANN 899
LT + LNLS N L F NL ++E LDLSYN + + L L + N
Sbjct: 322 LTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTN 381
Query: 900 NLSGKIPDRV-AQFSTFEEDSYEGNPFLCGLP 930
L +PD + + ++ ++ NP+ C P
Sbjct: 382 QLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCP 412
Score = 31.6 bits (70), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
Query: 173 GSIDIKGLDSLSNLEELDMSYNAIDNLVVPQGLERLSTLSNLKFLRLD 220
GSID + ++L LE LD+SYN I L G + L NLK L LD
Sbjct: 336 GSIDSRMFENLDKLEVLDLSYNHIRAL----GDQSFLGLPNLKELALD 379
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 37.4 bits (85), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 113/471 (23%), Positives = 175/471 (37%), Gaps = 79/471 (16%)
Query: 510 GSIPSSFADMKMLKSLDISYNQLTGEIPDRMAIGCFSLEILALSNNNLQGHIFSKKFNLT 569
G + F +M +L+ LD+S N T +I + + +L L HI F
Sbjct: 195 GKCMNPFRNM-VLEILDVSGNGWTVDITGNFSNAISKSQAFSLI---LAHHIMGAGFGFH 250
Query: 570 NLMRLQLDGNKFIGEIPKSLSKCYLLGGLYLSDNHLSGKIPRWLGNLSALEDIIMPNNNL 629
N+ D N F G S+ L G S N R L L+ + + N +
Sbjct: 251 NIK--DPDQNTFAGLARSSVRHLDLSHGFVFSLN------SRVFETLKDLKVLNLAYNKI 302
Query: 630 EGPIPIEFCQLDYLKILDLSNNTIFGTLPSC--FSPAYIEEIHLSKNKIEGRLESIIHYS 687
F LD L++L+LS N + G L S + + I L KN I + +
Sbjct: 303 NKIADEAFYGLDNLQVLNLSYN-LLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFL 361
Query: 688 PYLMTLDLSYNCLHGSIPTWIDRLPQLSYLLLANNYI----EGEIPIQICQLKEVRLIDL 743
L TLDL N L T I +P + + L+ N + + + + L E RL +L
Sbjct: 362 EKLQTLDLRDNAL-----TTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENL 416
Query: 744 SHNNLSGHIPPCLVNTALNEGYHEAVAPISSSSDDASTYVLPSVAPNGSPIGEEETVQFT 803
+P + LN+ SS S D + P+ +P E+ F
Sbjct: 417 DILYFLLRVPHLQI-LILNQN------RFSSCSGDQT--------PSENPSLEQ---LFL 458
Query: 804 TKNMSYYYQGRILMSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSN 863
+NM L +L + G L+ ++ L L+HN L P FS+
Sbjct: 459 GENM--------LQLAWETELCWDVFEG--------LSHLQVLYLNHNYLNSLPPGVFSH 502
Query: 864 LKQIESLDLSYNLLL----GKIPPQLIVLNTLAVFRVANNNLSGKIPDRVAQFSTFEEDS 919
L + L L+ N L +P L +L+ ++ N L PD S +
Sbjct: 503 LTALRGLSLNSNRLTVLSHNDLPANLEILD------ISRNQLLAPNPDVFVSLSVLD--- 553
Query: 920 YEGNPFLCGLPLSKSC---DDNGLTTATPEA-----YTENKEGDSLIDMDS 962
N F+C LS + +T A P A Y ++ G SL + +
Sbjct: 554 ITHNKFICECELSTFINWLNHTNVTIAGPPADIYCVYPDSFSGVSLFSLST 604
Score = 30.4 bits (67), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 71/290 (24%), Positives = 124/290 (42%), Gaps = 40/290 (13%)
Query: 495 LSGLMDLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGEIPDRMAIGCFSLEILALSN 554
L L LNL+ N N +F + L+ L++SYN L GE+ G + + L
Sbjct: 289 LKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYN-LLGELYSSNFYGLPKVAYIDLQK 347
Query: 555 NNL-----QGHIFSKKFNLTNLMRLQLDGNKFIGEIPKSLSKCYLLGGLYLSDNHLSGKI 609
N++ Q F +K +L L FI IP ++LS N L +
Sbjct: 348 NHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPD----------IFLSGNKLV-TL 396
Query: 610 PRWLGNLSALEDIIMPNNNLEGPIPIEF-CQLDYLKILDLSNNTIFGTLPSCFSPA---Y 665
P+ NL+A I + N LE + F ++ +L+IL L+ N F + +P+
Sbjct: 397 PKI--NLTA-NLIHLSENRLENLDILYFLLRVPHLQILILNQNR-FSSCSGDQTPSENPS 452
Query: 666 IEEIHLSKNKIEGRLESIIHYSPY-----LMTLDLSYNCLHGSIPTWIDRLPQLSYLLLA 720
+E++ L +N ++ E+ + + + L L L++N L+ P L L L L
Sbjct: 453 LEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLN 512
Query: 721 NNYI----EGEIPIQICQLKEVRLIDLSHNNLSGHIPPCLVNTALNEGYH 766
+N + ++P + ++D+S N L P V+ ++ + H
Sbjct: 513 SNRLTVLSHNDLP------ANLEILDISRNQLLAPNPDVFVSLSVLDITH 556
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 37.4 bits (85), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 57/117 (48%), Gaps = 6/117 (5%)
Query: 816 LMSMSGIDLSCNKLT-GEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSY 874
+ S+ +D+S N ++ E + + +LN+S N LT TI +I+ LDL
Sbjct: 373 MKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHS 430
Query: 875 NLLLGKIPPQLIVLNTLAVFRVANNNLSGKIPDRV-AQFSTFEEDSYEGNPFLCGLP 930
N + IP Q++ L L VA+N L +PD + + ++ ++ NP+ C P
Sbjct: 431 NKI-KSIPKQVVKLEALQELNVASNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCP 485
Score = 29.6 bits (65), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 44/195 (22%), Positives = 91/195 (46%), Gaps = 30/195 (15%)
Query: 558 QGHIFSKKFNLTNLMRLQLDGNKFIGEIPKSLSKCYLLGGLYLSDNHLSGKIPRWLGNLS 617
Q +I+ + F+ N+ + G + + + S +L L S+N L+ + G+L+
Sbjct: 292 QSYIY-EIFSNMNIKNFTVSGTRMVHMLCPSKISPFL--HLDFSNNLLTDTVFENCGHLT 348
Query: 618 ALEDIIMPNNNLE--GPIPIEFCQLDYLKILDLSNNTIFGTLPSCFSPAYIEEIHLSKNK 675
LE +I+ N L+ I Q+ L+ LD+S N++ +Y E+
Sbjct: 349 ELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSV----------SYDEK------- 391
Query: 676 IEGRLESIIHYSPYLMTLDLSYNCLHGSIPTWIDRLPQLSYLLLANNYIEGEIPIQICQL 735
+ ++ L++L++S N L +I + P++ L L +N I+ IP Q+ +L
Sbjct: 392 -----KGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKS-IPKQVVKL 443
Query: 736 KEVRLIDLSHNNLSG 750
+ ++ ++++ N L
Sbjct: 444 EALQELNVASNQLKS 458
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 37.4 bits (85), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 48/93 (51%), Gaps = 6/93 (6%)
Query: 823 DLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLLGKIP 882
D S KLT IP + + I LNL+HN L PT F+ Q+ LD +N + K+
Sbjct: 10 DCSHLKLT-HIPDDLP--SNITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFN-SISKLE 65
Query: 883 PQLI-VLNTLAVFRVANNNLSGKIPDRVAQFST 914
P+L +L L V + +N LS +I D+ F T
Sbjct: 66 PELCQILPLLKVLNLQHNELS-QISDQTFVFCT 97
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 92/403 (22%), Positives = 147/403 (36%), Gaps = 67/403 (16%)
Query: 485 GHIPVEIGTYLSGLMDLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGEIPDRMAIGC 544
I + + + L +L+L N+ + + F + K L LD+S+N L+ ++ G
Sbjct: 86 SQISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNGLSST---KLGTGV 142
Query: 545 FSLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPKSLSKCYLLGGLYLSDNH 604
+ L ++ L+ + +F+G SL K L LS N
Sbjct: 143 QLENLQELLLAK------------NKILALRSEELEFLGN--SSLRK------LDLSSNP 182
Query: 605 LSGKIPRWLGNLSALEDIIMPNNNLEGPIPIEFC-QLDYLKI--LDLSNNTIFGTLPSCF 661
L P + L +++ N L + + C +L I L L+NN + T S F
Sbjct: 183 LKEFSPGCFQTIGKLFALLLNNAQLNPHLTEKLCWELSNTSIQNLSLANNQLLATSESTF 242
Query: 662 SPAYIEEIHLSKNKIEGRLESIIHYSPYLMTLDLSYNCLHGSIPTWIDRLPQLSYLLLAN 721
S L LDLSYN LH LP L YL L
Sbjct: 243 SGLKWTN---------------------LTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEY 281
Query: 722 NYIEGEIPIQICQLKEVRLIDLSHNNLSGHIPPCLVNTALNEGYHEAVAPISSSSDDAST 781
N I+ P L +R + L +++ H + S
Sbjct: 282 NNIQRLSPRSFYGLSNLRYLSLKR---------AFTKQSVSLASHPNIDDFSFQWLKYLE 332
Query: 782 YVLPSVAPNGSPIGEEETVQFTTKNMSYYYQGRILMSMSGIDLSCNKLTGEIPTQIGYLT 841
Y+ ++ N P + T T +S Y +S+S S LT E + + +
Sbjct: 333 YL--NMDDNNIPSTKSNTF---TGLVSLKY-----LSLSKTFTSLQTLTNETFVSLAH-S 381
Query: 842 RIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLLGKIPPQ 884
+ LNL+ N+++ TFS L Q+ LDL N + K+ Q
Sbjct: 382 PLLTLNLTKNHISKIANGTFSWLGQLRILDLGLNEIEQKLSGQ 424
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 37.0 bits (84), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 61/142 (42%), Gaps = 5/142 (3%)
Query: 495 LSGLMDLNLSRNAFNGSIPSSF--ADMKMLKSLDISYNQLTGEIPDRMAIGCFSLEILAL 552
L L L L RN + +M L++LD+S N L DR S+ +L L
Sbjct: 376 LKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNL 435
Query: 553 SNNNLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPKSLSKCYLLGGLYLSDNHLSGKIPRW 612
S+N L G +F + + L L N+ I IPK ++ L L ++ N L
Sbjct: 436 SSNMLTGSVF--RCLPPKVKVLDLHNNR-IMSIPKDVTHLQALQELNVASNQLKSVPDGV 492
Query: 613 LGNLSALEDIIMPNNNLEGPIP 634
L++L+ I + +N + P
Sbjct: 493 FDRLTSLQYIWLHDNPWDCTCP 514
Score = 37.0 bits (84), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 61/134 (45%), Gaps = 17/134 (12%)
Query: 800 VQFTTKNMSYYYQGRILMSMSGIDLSCNKLTGEIPTQI-GYLTRIRALNLSHNNLTGTIP 858
V TKNMS S+ +D+S N L + + I LNLS N LTG++
Sbjct: 395 VALMTKNMS---------SLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSV- 444
Query: 859 TTFSNL-KQIESLDLSYNLLLGKIPPQLIVLNTLAVFRVANNNLSGKIPDRV-AQFSTFE 916
F L +++ LDL N ++ IP + L L VA+N L +PD V + ++ +
Sbjct: 445 --FRCLPPKVKVLDLHNNRIMS-IPKDVTHLQALQELNVASNQLKS-VPDGVFDRLTSLQ 500
Query: 917 EDSYEGNPFLCGLP 930
NP+ C P
Sbjct: 501 YIWLHDNPWDCTCP 514
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 42/104 (40%), Gaps = 22/104 (21%)
Query: 473 LATLDVSTNFFRGHIPVEIGTYLSGLMDLNLSRNAFNG---------------------S 511
L TLDVS N H + ++ LNLS N G S
Sbjct: 405 LETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMS 464
Query: 512 IPSSFADMKMLKSLDISYNQLTGEIPDRMAIGCFSLEILALSNN 555
IP ++ L+ L+++ NQL +PD + SL+ + L +N
Sbjct: 465 IPKDVTHLQALQELNVASNQLKS-VPDGVFDRLTSLQYIWLHDN 507
Score = 30.0 bits (66), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 797 EETVQFTTKNMSYYYQGRILMSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGT 856
E V ++ +N+++ + + + LS N ++ I +L+ +R L LSHN +
Sbjct: 33 ESMVDYSNRNLTHVPKD-LPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSL 91
Query: 857 IPTTFSNLKQIESLDLSYNLL 877
F + +E LD+S+N L
Sbjct: 92 DFHVFLFNQDLEYLDVSHNRL 112
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 37.0 bits (84), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 72/323 (22%), Positives = 147/323 (45%), Gaps = 41/323 (12%)
Query: 574 LQLDGNKFIGEIPKSLSKCYL-LGGLYLSDNHLSGKIPRWLGNLSALEDIIMPNNNLEGP 632
+ L ++F ++ S +C+ + L L+ HL+G +P + +++L+ +++ N+ +
Sbjct: 258 INLQKHRF-SDLSSSTFRCFTRVQELDLTAAHLNG-LPSGIEGMNSLKKLVLNANSFD-- 313
Query: 633 IPIEFCQLDYLKILDLSNNTIFGTL------PSCFSP-AYIEEIHLSKNKIEG------R 679
+ CQ++ L + I G + C ++++ LS + IE +
Sbjct: 314 ---QLCQINAASFPSLRDLYIKGNMRKLDLGTRCLEKLENLQKLDLSHSDIEASDCCNLQ 370
Query: 680 LESIIHYSPYLMTLDLSYNCLHGSIPTWIDRLPQLSYLLLANNYIEGEIPIQICQ-LKEV 738
L+++ H L L+LSYN G PQL L +A ++ + P Q L +
Sbjct: 371 LKNLRH----LQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTHLHVKAPHSPFQNLHLL 426
Query: 739 RLIDLSHNNLSGHIPPCLVNTALNEGYHEAVAPISSSSDDASTYVLPSVAPNG--SPIGE 796
R+++LSH CL++T+ N+ + + + +++ S++ +G
Sbjct: 427 RVLNLSH---------CLLDTS-NQHLLAGLQDLRHLNLQGNSFQDGSISKTNLLQMVGS 476
Query: 797 EETVQFTTKNMSYYYQGRI--LMSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLT 854
E + ++ N+ Q L +++ +DLS N LTG+ + +L + LN++ NN+
Sbjct: 477 LEILILSSCNLLSIDQQAFHGLRNVNHLDLSHNSLTGDSMDALSHLKGLY-LNMASNNIR 535
Query: 855 GTIPTTFSNLKQIESLDLSYNLL 877
P L Q ++LS+N L
Sbjct: 536 IIPPHLLPALSQQSIINLSHNPL 558
Score = 33.1 bits (74), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 67/247 (27%), Positives = 96/247 (38%), Gaps = 39/247 (15%)
Query: 495 LSGLMDLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGEIPDRMAIGCFSLEILALSN 554
L L LNLS N G +F + L+ LD+++ L + P L +L LS+
Sbjct: 374 LRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTHLHVKAPHSPFQNLHLLRVLNLSH 433
Query: 555 ---NNLQGHIFSKKFNLTNLMRLQLDGNKFI-GEIPKS-------------LSKCYLLG- 596
+ H+ + L +L L L GN F G I K+ LS C LL
Sbjct: 434 CLLDTSNQHLLA---GLQDLRHLNLQGNSFQDGSISKTNLLQMVGSLEILILSSCNLLSI 490
Query: 597 ------------GLYLSDNHLSGKIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLDYLK 644
L LS N L+G L +L L + M +NN+ P L
Sbjct: 491 DQQAFHGLRNVNHLDLSHNSLTGDSMDALSHLKGLY-LNMASNNIRIIPPHLLPALSQQS 549
Query: 645 ILDLSNNTIFGTLPSC-FSPAYIEEIHLSKNKIEGRLESIIHYSPYLMTLDLSYNCLHGS 703
I++LS+N + T + F Y E +H K+E E+ P L + LS LH
Sbjct: 550 IINLSHNPLDCTCSNIHFITWYKENLH----KLEDSEETTCANPPSLRGVKLSDVKLHCG 605
Query: 704 IPTWIDR 710
+ R
Sbjct: 606 THMLVPR 612
Score = 30.0 bits (66), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 74/294 (25%), Positives = 126/294 (42%), Gaps = 30/294 (10%)
Query: 472 KLATLDVSTNFFRGHIPVEIGTYLSGLMDLNLSRNAFNGSIPSSFADMKMLKSLDISYNQ 531
++ LD++ G +P I ++ L L L+ N+F+ + A L+ L I N
Sbjct: 278 RVQELDLTAAHLNG-LPSGIEG-MNSLKKLVLNANSFDQLCQINAASFPSLRDLYIKGNM 335
Query: 532 LTGEIPDRMAIGCFSLEILALSNNNLQGHIFS--KKFNLTNLMRLQLDGNKFIGEIPKSL 589
++ R +L+ L LS+++++ + NL +L L L N+ +G ++
Sbjct: 336 RKLDLGTRCLEKLENLQKLDLSHSDIEASDCCNLQLKNLRHLQYLNLSYNEPLGLEDQAF 395
Query: 590 SKCYLLGGLYLSDNHLSGKIPRW-LGNLSALEDIIMPNNNLEGPIPIEFCQLDYLKILDL 648
+C L L ++ HL K P NL L + + + L+ L L+ L+L
Sbjct: 396 KECPQLELLDVAFTHLHVKAPHSPFQNLHLLRVLNLSHCLLDTSNQHLLAGLQDLRHLNL 455
Query: 649 SNNTIFGTLPSCFSPAYIEEIHLSKNKIEGRLESIIHYSPYLMT--------------LD 694
N+ F I + +L + + G LE +I S L++ LD
Sbjct: 456 QGNS--------FQDGSISKTNLLQ--MVGSLEILILSSCNLLSIDQQAFHGLRNVNHLD 505
Query: 695 LSYNCLHGSIPTWIDRLPQLSYLLLANNYIEGEIPIQICQLKEVRLIDLSHNNL 748
LS+N L G + L L YL +A+N I P + L + +I+LSHN L
Sbjct: 506 LSHNSLTGDSMDALSHLKGL-YLNMASNNIRIIPPHLLPALSQQSIINLSHNPL 558
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 37.0 bits (84), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 79/182 (43%), Gaps = 4/182 (2%)
Query: 473 LATLDVSTNFFRGHIPVEIGTYLSGLMDLNLSRNAFNGSIPSSFADMKMLKSLDISYNQL 532
L TL + +N + IP+ + T LS L L++S N + F D+ LKSL++ N L
Sbjct: 82 LRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDL 140
Query: 533 TGEIPDRMAIGCFSLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPKSLSKC 592
I R G SLE L L NL +L L+ L+L S +
Sbjct: 141 V-YISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRL 199
Query: 593 YLLGGLYLSD-NHLSGKIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLDYLKILDLSNN 651
Y L L +S +L P L L+ L + + + NL + L YL+ L+LS N
Sbjct: 200 YRLKVLEISHWPYLDTMTPNCLYGLN-LTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYN 258
Query: 652 TI 653
I
Sbjct: 259 PI 260
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 37.0 bits (84), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 64/129 (49%), Gaps = 15/129 (11%)
Query: 271 LVSLSSWSVGINT--GLDSLSNLEELDMTNNAINNLVVPKDYRCLRKLNTLYLGGIAMID 328
+ +LS++ G+ T G+ L+NL L++ +N I +L + L K+ L L G +
Sbjct: 43 ITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLA---PLKNLTKITELELSGNPL-- 97
Query: 329 GSKVLQSIGSLPSLKTLYLLFTNFKGTIVNQELHNFTNLEELLLVKSDLHVSQLLQSIAS 388
K + +I L S+KTL L T L +NL+ L L DL+ + +A
Sbjct: 98 --KNVSAIAGLQSIKTLDLTSTQITDV---TPLAGLSNLQVLYL---DLNQITNISPLAG 149
Query: 389 FTSLKYLSI 397
T+L+YLSI
Sbjct: 150 LTNLQYLSI 158
Score = 33.1 bits (74), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 74/159 (46%), Gaps = 13/159 (8%)
Query: 495 LSGLMDLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGEIPDRMAIGCFSLEILALSN 554
L+ + +L LS N S+ A ++ +K+LD++ Q+T P G +L++L L
Sbjct: 84 LTKITELELSGNPLKNV--SAIAGLQSIKTLDLTSTQITDVTP---LAGLSNLQVLYLDL 138
Query: 555 NNLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPKSLSKCYLLGGLYLSDNHLSGKIPRWLG 614
N + S LTNL L + GN + ++ L+ L L DN +S P L
Sbjct: 139 NQITN--ISPLAGLTNLQYLSI-GNAQVSDL-TPLANLSKLTTLKADDNKISDISP--LA 192
Query: 615 NLSALEDIIMPNNNLEGPIPIEFCQLDYLKILDLSNNTI 653
+L L ++ + NN + P+ L I+ L+N TI
Sbjct: 193 SLPNLIEVHLKNNQISDVSPL--ANTSNLFIVTLTNQTI 229
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 37.0 bits (84), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 65/129 (50%), Gaps = 15/129 (11%)
Query: 271 LVSLSSWSVGINT--GLDSLSNLEELDMTNNAINNLVVPKDYRCLRKLNTLYLGGIAMID 328
+ +LS+++ G+ T G+ L+NL L++ +N I +L + L K+ L L G +
Sbjct: 49 IATLSAFNTGVTTIEGIQYLNNLIGLELKDNQITDLT---PLKNLTKITELELSGNPL-- 103
Query: 329 GSKVLQSIGSLPSLKTLYLLFTNFKGTIVNQELHNFTNLEELLLVKSDLHVSQLLQSIAS 388
K + +I L S+KTL L T L +NL+ L L DL+ + +A
Sbjct: 104 --KNVSAIAGLQSIKTLDLTSTQITDV---TPLAGLSNLQVLYL---DLNQITNISPLAG 155
Query: 389 FTSLKYLSI 397
T+L+YLSI
Sbjct: 156 LTNLQYLSI 164
Score = 29.6 bits (65), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 66/144 (45%), Gaps = 27/144 (18%)
Query: 495 LSGLMDLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGEIP------------DRMAI 542
L+ + +L LS N S+ A ++ +K+LD++ Q+T P D I
Sbjct: 90 LTKITELELSGNPLKNV--SAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQI 147
Query: 543 -------GCFSLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPKSLSKCYLL 595
G +L+ L++ NN Q + + NL+ L L+ D NK I +I L+ L
Sbjct: 148 TNISPLAGLTNLQYLSIGNN--QVNDLTPLANLSKLTTLRADDNK-ISDI-SPLASLPNL 203
Query: 596 GGLYLSDNHLSGKIPRWLGNLSAL 619
++L DN +S P L NLS L
Sbjct: 204 IEVHLKDNQISDVSP--LANLSNL 225
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 37.0 bits (84), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 37/96 (38%)
Query: 837 IGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLLGKIPPQLIVLNTLAVFRV 896
G L + L L N LTG P F I+ L L N + + L+ L +
Sbjct: 50 FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109
Query: 897 ANNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGLPLS 932
+N +S +P ++ + NPF C L+
Sbjct: 110 YDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLA 145
Score = 34.3 bits (77), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 49/110 (44%), Gaps = 3/110 (2%)
Query: 822 IDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLLGKI 881
++L N+LTG P + I+ L L N + F L Q+++L+L N + +
Sbjct: 59 LELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVM 118
Query: 882 PPQLIVLNTLAVFRVANNNLSGKIPDRVAQFSTF-EEDSYEGNPFLCGLP 930
P LN+L +A+N + +A F+ + + S G CG P
Sbjct: 119 PGSFEHLNSLTSLNLASNPFNCNC--HLAWFAEWLRKKSLNGGAARCGAP 166
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 36.6 bits (83), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 67/237 (28%), Positives = 100/237 (42%), Gaps = 25/237 (10%)
Query: 495 LSGLMDLNLSRN--AFNGSIPSSFADMKMLKSLDISYNQLTGEIPDRMAIGCFSLEILAL 552
L L L+LSRN +F G S LK LD+S+N + + +G LE L
Sbjct: 370 LPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSN--FLGLEQLEHLDF 427
Query: 553 SNNNL-QGHIFSKKFNLTNLMRLQLDGN----KFIGEIPKSLSKCYLL--GGLYLSDNHL 605
++NL Q FS +L NL+ L + F G I LS +L G +N L
Sbjct: 428 QHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG-IFNGLSSLEVLKMAGNSFQENFL 486
Query: 606 SGKIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLDYLKILDLSNNTIFG--TLP-SCFS 662
P L L + + LE P F L L++L++S+N F T P C +
Sbjct: 487 ----PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLN 542
Query: 663 PAYIEEIHLSKNKIEGRLESIIHYSPYLMTLDLSYN-----CLHGSIPTWIDRLPQL 714
+ + L+ + + + + + H+ L L+L+ N C H S WI QL
Sbjct: 543 SLQVLDYSLN-HIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQL 598
Score = 34.7 bits (78), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Query: 837 IGYLTRIRALNLSHNNLTG-TIPTTFSNLKQIESLDLSYN 875
IG+L ++ LN++HN + +P FSNL +E LDLS N
Sbjct: 144 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 183
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Query: 816 LMSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 875
L +++ +DLS +L PT L+ ++ LN+SHNN + L ++ LD S N
Sbjct: 493 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN 552
Query: 876 LLLGKIPPQLIVL-NTLAVFRVANNNLS 902
++ +L ++LA + N+ +
Sbjct: 553 HIMTSKKQELQHFPSSLAFLNLTQNDFA 580
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 36.2 bits (82), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 48/93 (51%), Gaps = 6/93 (6%)
Query: 823 DLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLLGKIP 882
D S KLT ++P + T I LNL+HN L F+ Q+ SLD+ +N + K+
Sbjct: 10 DCSHLKLT-QVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFN-TISKLE 65
Query: 883 PQLI-VLNTLAVFRVANNNLSGKIPDRVAQFST 914
P+L L L V + +N LS ++ D+ F T
Sbjct: 66 PELCQKLPMLKVLNLQHNELS-QLSDKTFAFCT 97
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 36.2 bits (82), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 48/93 (51%), Gaps = 6/93 (6%)
Query: 823 DLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLLGKIP 882
D S KLT ++P + T I LNL+HN L F+ Q+ SLD+ +N + K+
Sbjct: 20 DCSHLKLT-QVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFN-TISKLE 75
Query: 883 PQLI-VLNTLAVFRVANNNLSGKIPDRVAQFST 914
P+L L L V + +N LS ++ D+ F T
Sbjct: 76 PELCQKLPMLKVLNLQHNELS-QLSDKTFAFCT 107
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 36.2 bits (82), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 48/93 (51%), Gaps = 6/93 (6%)
Query: 823 DLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLLGKIP 882
D S KLT ++P + T I LNL+HN L F+ Q+ SLD+ +N + K+
Sbjct: 15 DCSHLKLT-QVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFN-TISKLE 70
Query: 883 PQLI-VLNTLAVFRVANNNLSGKIPDRVAQFST 914
P+L L L V + +N LS ++ D+ F T
Sbjct: 71 PELCQKLPMLKVLNLQHNELS-QLSDKTFAFCT 102
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 64/242 (26%), Positives = 95/242 (39%), Gaps = 68/242 (28%)
Query: 595 LGGLYLSDNHLSGKIPRWLGNLSALEDIIMPNNNLEGPIPI--------------EFCQL 640
L + S+N L+ P L NL+ L DI+M NN + P+ + +
Sbjct: 65 LTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDI 122
Query: 641 DYLK------ILDLSNNTI----------------FGTLPSCFSP----AYIEEIHLSKN 674
D LK L+LS+NTI FG + P +E + +S N
Sbjct: 123 DPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFGNQVTDLKPLANLTTLERLDISSN 182
Query: 675 KIEG--------RLESII-------HYSPYLMTLDLSYNCLHGSIPTWIDRLPQLSYLL- 718
K+ LES+I +P + +L L+G+ I L L+ L
Sbjct: 183 KVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTD 242
Query: 719 --LANNYIEGEIPIQ-ICQLKEVRLIDLSHNNLSGHIP----PCLVNTALNEGYHEAVAP 771
LANN I P+ + +L E++ L N +S P L N LNE E ++P
Sbjct: 243 LDLANNQISNLAPLSGLTKLTELK---LGANQISNISPLAGLTALTNLELNENQLEDISP 299
Query: 772 IS 773
IS
Sbjct: 300 IS 301
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 23/36 (63%)
Query: 176 DIKGLDSLSNLEELDMSYNAIDNLVVPQGLERLSTL 211
DI L SL+NL +LD++ N I NL GL +L+ L
Sbjct: 230 DIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTEL 265
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 64/242 (26%), Positives = 95/242 (39%), Gaps = 68/242 (28%)
Query: 595 LGGLYLSDNHLSGKIPRWLGNLSALEDIIMPNNNLEGPIPI--------------EFCQL 640
L + S+N L+ P L NL+ L DI+M NN + P+ + +
Sbjct: 65 LTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDI 122
Query: 641 DYLK------ILDLSNNTI----------------FGTLPSCFSP----AYIEEIHLSKN 674
D LK L+LS+NTI FG + P +E + +S N
Sbjct: 123 DPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFGNQVTDLKPLANLTTLERLDISSN 182
Query: 675 KIEG--------RLESII-------HYSPYLMTLDLSYNCLHGSIPTWIDRLPQLSYLL- 718
K+ LES+I +P + +L L+G+ I L L+ L
Sbjct: 183 KVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTD 242
Query: 719 --LANNYIEGEIPIQ-ICQLKEVRLIDLSHNNLSGHIP----PCLVNTALNEGYHEAVAP 771
LANN I P+ + +L E++ L N +S P L N LNE E ++P
Sbjct: 243 LDLANNQISNLAPLSGLTKLTELK---LGANQISNISPLAGLTALTNLELNENQLEDISP 299
Query: 772 IS 773
IS
Sbjct: 300 IS 301
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 23/36 (63%)
Query: 176 DIKGLDSLSNLEELDMSYNAIDNLVVPQGLERLSTL 211
DI L SL+NL +LD++ N I NL GL +L+ L
Sbjct: 230 DIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTEL 265
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 35.4 bits (80), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 7/60 (11%)
Query: 837 IGYLTRIRALNLSHNNL-TGTIPTTFSNLKQIESLDLSYNLLLGKIPPQLIVLNTLAVFR 895
IG L ++ LN++HN + + +P FSNL + +DLSYN + Q I +N L R
Sbjct: 124 IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYI------QTITVNDLQFLR 177
Score = 30.0 bits (66), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 12/69 (17%)
Query: 840 LTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNL------LLGKIPPQLIVLNTLAV 893
L R++ LN+SHNNL + ++ L + +LD S+N +L P +LA
Sbjct: 496 LHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFP------KSLAF 549
Query: 894 FRVANNNLS 902
F + NN+++
Sbjct: 550 FNLTNNSVA 558
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 35.4 bits (80), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 7/60 (11%)
Query: 837 IGYLTRIRALNLSHNNL-TGTIPTTFSNLKQIESLDLSYNLLLGKIPPQLIVLNTLAVFR 895
IG L ++ LN++HN + + +P FSNL + +DLSYN + Q I +N L R
Sbjct: 119 IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYI------QTITVNDLQFLR 172
Score = 30.0 bits (66), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 12/69 (17%)
Query: 840 LTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNL------LLGKIPPQLIVLNTLAV 893
L R++ LN+SHNNL + ++ L + +LD S+N +L P +LA
Sbjct: 491 LHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFP------KSLAF 544
Query: 894 FRVANNNLS 902
F + NN+++
Sbjct: 545 FNLTNNSVA 553
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 35.4 bits (80), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 64/242 (26%), Positives = 95/242 (39%), Gaps = 68/242 (28%)
Query: 595 LGGLYLSDNHLSGKIPRWLGNLSALEDIIMPNNNLEGPIPI--------------EFCQL 640
L + S+N L+ P L NL+ L DI+M NN + P+ + +
Sbjct: 69 LTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDI 126
Query: 641 DYLK------ILDLSNNTI----------------FGTLPSCFSP----AYIEEIHLSKN 674
D LK L+LS+NTI FG + P +E + +S N
Sbjct: 127 DPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSN 186
Query: 675 KIEG--------RLESII-------HYSPYLMTLDLSYNCLHGSIPTWIDRLPQLSYLL- 718
K+ LES+I +P + +L L+G+ I L L+ L
Sbjct: 187 KVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTD 246
Query: 719 --LANNYIEGEIPIQ-ICQLKEVRLIDLSHNNLSGHIP----PCLVNTALNEGYHEAVAP 771
LANN I P+ + +L E++ L N +S P L N LNE E ++P
Sbjct: 247 LDLANNQISNLAPLSGLTKLTELK---LGANQISNISPLAGLTALTNLELNENQLEDISP 303
Query: 772 IS 773
IS
Sbjct: 304 IS 305
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 23/36 (63%)
Query: 176 DIKGLDSLSNLEELDMSYNAIDNLVVPQGLERLSTL 211
DI L SL+NL +LD++ N I NL GL +L+ L
Sbjct: 234 DIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTEL 269
Score = 29.6 bits (65), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 66/161 (40%), Gaps = 25/161 (15%)
Query: 176 DIKGLDSLSNLEELDMSYNAIDNLVVPQGLERLSTLS------------NLKFL-RLDYX 222
DI L +L+NL L++S N I ++ GL L LS NL L RLD
Sbjct: 125 DIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDIS 184
Query: 223 XXXXXXXXXXXXXXXXXXXXXADNRFNGSIDIKGKQASSILRVPSFVDLVSLSSWSVGIN 282
+N+ + DI + L + + +D +SL+ +
Sbjct: 185 SNKVSDISVLAKLTNLESLIATNNQIS---DI------TPLGILTNLDELSLNGNQLKDI 235
Query: 283 TGLDSLSNLEELDMTNNAINNLVVPKDYRCLRKLNTLYLGG 323
L SL+NL +LD+ NN I+NL L KL L LG
Sbjct: 236 GTLASLTNLTDLDLANNQISNLA---PLSGLTKLTELKLGA 273
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 35.4 bits (80), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 64/242 (26%), Positives = 95/242 (39%), Gaps = 68/242 (28%)
Query: 595 LGGLYLSDNHLSGKIPRWLGNLSALEDIIMPNNNLEGPIPI--------------EFCQL 640
L + S+N L+ P L NL+ L DI+M NN + P+ + +
Sbjct: 70 LTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDI 127
Query: 641 DYLK------ILDLSNNTI----------------FGTLPSCFSP----AYIEEIHLSKN 674
D LK L+LS+NTI FG + P +E + +S N
Sbjct: 128 DPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSN 187
Query: 675 KIEG--------RLESII-------HYSPYLMTLDLSYNCLHGSIPTWIDRLPQLSYLL- 718
K+ LES+I +P + +L L+G+ I L L+ L
Sbjct: 188 KVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTD 247
Query: 719 --LANNYIEGEIPIQ-ICQLKEVRLIDLSHNNLSGHIP----PCLVNTALNEGYHEAVAP 771
LANN I P+ + +L E++ L N +S P L N LNE E ++P
Sbjct: 248 LDLANNQISNLAPLSGLTKLTELK---LGANQISNISPLAGLTALTNLELNENQLEDISP 304
Query: 772 IS 773
IS
Sbjct: 305 IS 306
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 23/36 (63%)
Query: 176 DIKGLDSLSNLEELDMSYNAIDNLVVPQGLERLSTL 211
DI L SL+NL +LD++ N I NL GL +L+ L
Sbjct: 235 DIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTEL 270
Score = 29.6 bits (65), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 66/161 (40%), Gaps = 25/161 (15%)
Query: 176 DIKGLDSLSNLEELDMSYNAIDNLVVPQGLERLSTLS------------NLKFL-RLDYX 222
DI L +L+NL L++S N I ++ GL L LS NL L RLD
Sbjct: 126 DIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDIS 185
Query: 223 XXXXXXXXXXXXXXXXXXXXXADNRFNGSIDIKGKQASSILRVPSFVDLVSLSSWSVGIN 282
+N+ + DI + L + + +D +SL+ +
Sbjct: 186 SNKVSDISVLAKLTNLESLIATNNQIS---DI------TPLGILTNLDELSLNGNQLKDI 236
Query: 283 TGLDSLSNLEELDMTNNAINNLVVPKDYRCLRKLNTLYLGG 323
L SL+NL +LD+ NN I+NL L KL L LG
Sbjct: 237 GTLASLTNLTDLDLANNQISNLA---PLSGLTKLTELKLGA 274
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
Query: 840 LTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLLGKIPPQLIVLNTLAVFRVANN 899
LT + LNL+HN L F L + LDLSYN L L L R+ N
Sbjct: 132 LTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQN 191
Query: 900 NLSGKIPDRV-AQFSTFEEDSYEGNPFLCGLP 930
L +PD V + ++ + NP+ C P
Sbjct: 192 QLKS-VPDGVFDRLTSLQYIWLHDNPWDCTCP 222
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 72/157 (45%), Gaps = 5/157 (3%)
Query: 568 LTNLMRLQLDGNKFIGEIPKSLSKCYLLGGLYLSDNHLSGKIPRWLGNLSALEDIIMPNN 627
L N+ L L GNK + +I +L + L L L+ N L L+ L+++++ N
Sbjct: 62 LPNVRYLALGGNK-LHDI-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVEN 119
Query: 628 NLEGPIPIEFCQLDYLKILDLSNNTIFGTLPSCFSP-AYIEEIHLSKNKIEGRLESIIHY 686
L+ F +L L L+L++N + F + E+ LS N+++ E +
Sbjct: 120 QLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDK 179
Query: 687 SPYLMTLDLSYNCLHGSIPTWI-DRLPQLSYLLLANN 722
L L L N L S+P + DRL L Y+ L +N
Sbjct: 180 LTQLKDLRLYQNQLK-SVPDGVFDRLTSLQYIWLHDN 215
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 29/43 (67%), Gaps = 5/43 (11%)
Query: 178 KGL-DSLSNLEELDMSYNAIDNLVVPQGLERLSTLSNLKFLRL 219
KG+ D L+NL ELD+SYN + +L P+G+ L+ LK LRL
Sbjct: 150 KGVFDKLTNLTELDLSYNQLQSL--PEGV--FDKLTQLKDLRL 188
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 75/169 (44%), Gaps = 10/169 (5%)
Query: 487 IPVEIGTYLSGLMDLNLSRNAFNGSIPS-SFADMKMLKSLDISYNQLTGEIPDRMAIGCF 545
+P + YLS L +L L N SIPS +F + L+ LD+ + I + G
Sbjct: 98 VPTQAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLV 156
Query: 546 SLEILALSNNNLQGHIFSKKFNLTNLMR---LQLDGNKFIGEIPKSLSKCYLLGGLYLSD 602
+L L L NL+ NLT L+R L+L GN+ P S L L+L
Sbjct: 157 NLRYLNLGMCNLKD-----IPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMH 211
Query: 603 NHLSGKIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLDYLKILDLSNN 651
++ +L +LE++ + +NNL F L L+ + L++N
Sbjct: 212 AQVATIERNAFDDLKSLEELNLSHNNLMSLPHDLFTPLHRLERVHLNHN 260
Score = 32.7 bits (73), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 33/64 (51%)
Query: 816 LMSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 875
L+ + ++LS N+L P LT +R L L H + F +LK +E L+LS+N
Sbjct: 177 LVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHN 236
Query: 876 LLLG 879
L+
Sbjct: 237 NLMS 240
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 57/136 (41%), Gaps = 7/136 (5%)
Query: 495 LSGLMDLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGEIPDRMAIGCFSLEILALSN 554
L+ L L L+ N F + LK L + NQL +PD + +L L L +
Sbjct: 84 LTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQS-LPDGVFDKLTNLTYLYLYH 142
Query: 555 NNLQG---HIFSKKFNLTNLMRLQLDGNKFIGEIPKSLSKCYLLGGLYLSDNHLSGKIPR 611
N LQ +F K LTNL RL LD N+ K L L L+DN L
Sbjct: 143 NQLQSLPKGVFDK---LTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKSVPDG 199
Query: 612 WLGNLSALEDIIMPNN 627
L++L I + NN
Sbjct: 200 VFDRLTSLTHIWLLNN 215
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 35.0 bits (79), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 75/169 (44%), Gaps = 10/169 (5%)
Query: 487 IPVEIGTYLSGLMDLNLSRNAFNGSIPS-SFADMKMLKSLDISYNQLTGEIPDRMAIGCF 545
+P + YLS L +L L N SIPS +F + L+ LD+ + I + G
Sbjct: 98 VPTQAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLV 156
Query: 546 SLEILALSNNNLQGHIFSKKFNLTNLMR---LQLDGNKFIGEIPKSLSKCYLLGGLYLSD 602
+L L L NL+ NLT L+R L+L GN+ P S L L+L
Sbjct: 157 NLRYLNLGMCNLK-----DIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMH 211
Query: 603 NHLSGKIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLDYLKILDLSNN 651
++ +L +LE++ + +NNL F L L+ + L++N
Sbjct: 212 AQVATIERNAFDDLKSLEELNLSHNNLMSLPHDLFTPLHRLERVHLNHN 260
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 33/64 (51%)
Query: 816 LMSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 875
L+ + ++LS N+L P LT +R L L H + F +LK +E L+LS+N
Sbjct: 177 LVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHN 236
Query: 876 LLLG 879
L+
Sbjct: 237 NLMS 240
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 35.0 bits (79), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 60/230 (26%), Positives = 97/230 (42%), Gaps = 7/230 (3%)
Query: 473 LATLDVSTNFFRGHIPVEIGTYLSGLMDLNLSRNAFNGSIPS-SFADMKMLKSLDISYNQ 531
L TL++ N+ IP YLS L +L L N SIPS +F + L LD+ +
Sbjct: 125 LNTLELFDNWLTV-IPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELK 182
Query: 532 LTGEIPDRMAIGCFSLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPKSLSK 591
I + G F+L+ L L N++ L L L++ GN F P S
Sbjct: 183 KLEYISEGAFEGLFNLKYLNLGMCNIKD--MPNLTPLVGLEELEMSGNHFPEIRPGSFHG 240
Query: 592 CYLLGGLYLSDNHLSGKIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLDYLKILDLSNN 651
L L++ ++ +S L++L ++ + +NNL F L YL L L +N
Sbjct: 241 LSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHN 300
Query: 652 TIFGTLPSCFSPAYIEEIHLSKNKIEGRLESIIHY-SPYLMTLD-LSYNC 699
+ ++ E + + GR + +H YL+ +D S+ C
Sbjct: 301 PWNCDCDILWLAWWLREYIPTNSTCCGRCHAPMHMRGRYLVEVDQASFQC 350
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 34.7 bits (78), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 70/291 (24%), Positives = 116/291 (39%), Gaps = 45/291 (15%)
Query: 436 GKFPNWLVEXXXXXXXXXXXXXXXFGSFRMPIHSHQKLATLDVSTN--FFRGHIP-VEIG 492
G+FP ++ F +P L LD+S N F+G + G
Sbjct: 317 GQFPTLKLKSLKRLTFTSNKGGNAFSEVDLP-----SLEFLDLSRNGLSFKGCCSQSDFG 371
Query: 493 TYLSGLMDLNLSRNAFNGSI--PSSFADMKMLKSLDISYNQLTGEIPDRMAIGCFSLEIL 550
T +DL +FNG I S+F ++ L+ LD ++ L + + +L L
Sbjct: 372 TTSLKYLDL-----SFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL 426
Query: 551 ALSNNNLQGHIFSKKFN-LTNLMRLQLDGNKFIGE-IPKSLSKCYLLGGLYLSDNHLSGK 608
+S+ + + F+ FN L++L L++ GN F +P ++ L L LS L
Sbjct: 427 DISHTHTRV-AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL 485
Query: 609 IPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLDYLKILDLSNNTIFGTLPSCFSPAYIEE 668
P +LS+L+ + M +NN + L+ L++LD S N I
Sbjct: 486 SPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI--------------- 530
Query: 669 IHLSKNKIEGRLESIIHYSPYLMTLDLSYN-----CLHGSIPTWIDRLPQL 714
+ + + + H+ L L+L+ N C H S WI QL
Sbjct: 531 -------MTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQL 574
Score = 34.7 bits (78), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Query: 837 IGYLTRIRALNLSHNNLTG-TIPTTFSNLKQIESLDLSYN 875
IG+L ++ LN++HN + +P FSNL +E LDLS N
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 159
Score = 31.6 bits (70), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 7/81 (8%)
Query: 816 LMSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 875
L +++ +DLS +L PT L+ ++ LN+SHNN + L ++ LD S N
Sbjct: 469 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN 528
Query: 876 LL-------LGKIPPQLIVLN 889
+ L P L LN
Sbjct: 529 HIMTSKKQELQHFPSSLAFLN 549
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 34.7 bits (78), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Query: 837 IGYLTRIRALNLSHNNLTG-TIPTTFSNLKQIESLDLSYN 875
IG+L ++ LN++HN + +P FSNL +E LDLS N
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 159
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 34.7 bits (78), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Query: 837 IGYLTRIRALNLSHNNLTG-TIPTTFSNLKQIESLDLSYN 875
IG+L ++ LN++HN + +P FSNL +E LDLS N
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 161
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 34.7 bits (78), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Query: 837 IGYLTRIRALNLSHNNLTG-TIPTTFSNLKQIESLDLSYN 875
IG+L ++ LN++HN + +P FSNL +E LDLS N
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 160
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 34.7 bits (78), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Query: 837 IGYLTRIRALNLSHNNLTG-TIPTTFSNLKQIESLDLSYN 875
IG+L ++ LN++HN + +P FSNL +E LDLS N
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 161
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 34.7 bits (78), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Query: 837 IGYLTRIRALNLSHNNLTG-TIPTTFSNLKQIESLDLSYN 875
IG+L ++ LN++HN + +P FSNL +E LDLS N
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 160
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 34.7 bits (78), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Query: 837 IGYLTRIRALNLSHNNLTG-TIPTTFSNLKQIESLDLSYN 875
IG+L ++ LN++HN + +P FSNL +E LDLS N
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 159
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 52/238 (21%), Positives = 93/238 (39%), Gaps = 20/238 (8%)
Query: 698 NCLHGSIPTWIDRLPQLSYLLLANNYIEGEIPIQICQLKEVRLIDLSHNNLSGHIPPCLV 757
NC G PT +L L L +N +G L + +DLS N LS C
Sbjct: 313 NCKFGQFPTL--KLKSLKRLTFTSN--KGGNAFSEVDLPSLEFLDLSRNGLS--FKGCCS 366
Query: 758 NTALNEGYHEAVAPISSSSDDASTYVLPSVAPNGSPIGEEETVQFTTKNMSYYYQGRILM 817
+ S D S + +++ N + + E + F N+ + + +
Sbjct: 367 QSDF--------GTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFL 418
Query: 818 SMSGI---DLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGT-IPTTFSNLKQIESLDLS 873
S+ + D+S L+ + L ++ N+ +P F+ L+ + LDLS
Sbjct: 419 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 478
Query: 874 YNLLLGKIPPQLIVLNTLAVFRVANNNLSGKIPDRV-AQFSTFEEDSYEGNPFLCGLP 930
L P L++L V +A+N L +PD + + ++ ++ NP+ C P
Sbjct: 479 QCQLEQLSPTAFNSLSSLQVLNMASNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCP 535
Score = 30.0 bits (66), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 58/228 (25%), Positives = 91/228 (39%), Gaps = 38/228 (16%)
Query: 495 LSGLMDLNLSRN--AFNGSIPSSFADMKMLKSLDISYNQLTGEIPDRMAIGCFSLEILAL 552
L L L+LSRN +F G S LK LD+S+N + + +G LE L
Sbjct: 346 LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN--FLGLEQLEHLDF 403
Query: 553 SNNNL-QGHIFSKKFNLTNLMRLQLDGNKFIGEIPKSLSKCYLLGGLYLSDNHLSGKIPR 611
++NL Q FS +L NL+ L +S H
Sbjct: 404 QHSNLKQMSEFSVFLSLRNLIYLD------------------------ISHTHTRVAFNG 439
Query: 612 WLGNLSALEDIIMPNNNL-EGPIPIEFCQLDYLKILDLSNNTIFGTLPSCF-SPAYIEEI 669
LS+LE + M N+ E +P F +L L LDLS + P+ F S + ++ +
Sbjct: 440 IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL 499
Query: 670 HLSKNKIEGRLESIIHYSPYLMTLDLSYNCLHGSIPTWIDRLPQLSYL 717
+++ N+++ + I L + L N W P++ YL
Sbjct: 500 NMASNQLKSVPDGIFDRLTSLQKIWLHTN-------PWDCSCPRIDYL 540
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 34.3 bits (77), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 53/200 (26%), Positives = 82/200 (41%), Gaps = 39/200 (19%)
Query: 586 PKSLSKCYLLGGLYLSDNHLSGKIPRWL-GNLSALEDIIMPNNNLEGPIPIEFCQLDYLK 644
P LL L L N LS +PR + N L + M NNNLE F L+
Sbjct: 116 PHVFQNVPLLTVLVLERNDLSS-LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQ 174
Query: 645 ILDLSNNTI----FGTLPSCFS-------------PAYIEEIHLSKNKI---------EG 678
L LS+N + +PS F P +EE+ S N I E
Sbjct: 175 NLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVEL 234
Query: 679 RLESIIHYS----------PYLMTLDLSYNCLHGSIPTWIDRLPQLSYLLLANNYIEGEI 728
+ + H + P L+ +DLSYN L + ++ +L L ++NN + +
Sbjct: 235 TILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-L 293
Query: 729 PIQICQLKEVRLIDLSHNNL 748
+ + ++++DLSHN+L
Sbjct: 294 NLYGQPIPTLKVLDLSHNHL 313
Score = 31.2 bits (69), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 53/112 (47%), Gaps = 16/112 (14%)
Query: 497 GLMDLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGEIPDRMAIGCF-----SLEILA 551
GL++++LS N + F M+ L+ L IS N+L +A+ + +L++L
Sbjct: 255 GLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL-------VALNLYGQPIPTLKVLD 307
Query: 552 LSNNNLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPKSLSKCYLLGGLYLSDN 603
LS+N+L H+ + L L LD N + LS + L L LS N
Sbjct: 308 LSHNHL-LHVERNQPQFDRLENLYLDHNSIVT---LKLSTHHTLKNLTLSHN 355
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 34.3 bits (77), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 63/255 (24%), Positives = 109/255 (42%), Gaps = 40/255 (15%)
Query: 472 KLATLDVSTN--FFRGHIP-VEIGTYLSGLMDLNLSRNAFNG--SIPSSFADMKMLKSLD 526
+L L +S+N F+G + GT +DL +FNG ++ S+F ++ L+ LD
Sbjct: 53 QLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL-----SFNGVITMSSNFLGLEQLEHLD 107
Query: 527 ISYNQLTGEIPDRMAIGCFSLEILALSNNNLQGHIFSKKFN-LTNLMRLQLDGNKFIGE- 584
++ L + + +L L +S+ + + F+ FN L++L L++ GN F
Sbjct: 108 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV-AFNGIFNGLSSLEVLKMAGNSFQENF 166
Query: 585 IPKSLSKCYLLGGLYLSDNHLSGKIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLDYLK 644
+P ++ L L LS L P +LS+L+ + M +NN + L+ L+
Sbjct: 167 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQ 226
Query: 645 ILDLSNNTIFGTLPSCFSPAYIEEIHLSKNKIEGRLESIIHYSPYLMTLDLSYN-----C 699
+LD S N I + + + + H+ L L+L+ N C
Sbjct: 227 VLDYSLNHI----------------------MTSKKQELQHFPSSLAFLNLTQNDFACTC 264
Query: 700 LHGSIPTWIDRLPQL 714
H S WI QL
Sbjct: 265 EHQSFLQWIKDQRQL 279
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Query: 816 LMSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYN 875
L +++ +DLS +L PT L+ ++ LN+SHNN + L ++ LD S N
Sbjct: 174 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN 233
Query: 876 LLLGKIPPQLIVL-NTLAVFRVANNNLS 902
++ +L ++LA + N+ +
Sbjct: 234 HIMTSKKQELQHFPSSLAFLNLTQNDFA 261
>pdb|1W1O|A Chain A, Native Cytokinin Dehydrogenase
pdb|1W1Q|A Chain A, Plant Cytokinin Dehydrogenase In Complex With
Isopentenyladenine
pdb|1W1R|A Chain A, Plant Cytokinin Dehydrogenase In Complex With Trans-zeatin
pdb|1W1S|A Chain A, Plant Cytokinin Dehydrogenase In Complex With
Benzylaminopurine
Length = 534
Score = 34.3 bits (77), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 44/84 (52%), Gaps = 11/84 (13%)
Query: 871 DLSYNLLLGKIPPQLIVLNTLAVFRVANNNLSGKIPDRVAQFSTFEEDSYEG-------- 922
D++Y L ++ + + LN L ++RV + L+ +P ++ + F+ ++G
Sbjct: 368 DVAYAAFLDRVHGEEVALNKLGLWRVPHPWLNMFVPR--SRIADFDRGVFKGILQGTDIV 425
Query: 923 NPFLCGLPLSKSCDDNGLTTATPE 946
P + PL+KS D+G++ ATP
Sbjct: 426 GPLIV-YPLNKSMWDDGMSAATPS 448
>pdb|3S1F|A Chain A, Asp169glu Mutant Of Maize Cytokinin OxidaseDEHYDROGENASE
COMPLEXED With N6-Isopentenyladenine
Length = 516
Score = 34.3 bits (77), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 44/83 (53%), Gaps = 11/83 (13%)
Query: 871 DLSYNLLLGKIPPQLIVLNTLAVFRVANNNLSGKIPDRVAQFSTFEEDSYEG-------- 922
D++Y L ++ + + LN L ++RV + L+ +P ++ + F+ ++G
Sbjct: 350 DVAYAAFLDRVHGEEVALNKLGLWRVPHPWLNMFVPR--SRIADFDRGVFKGILQGTDIV 407
Query: 923 NPFLCGLPLSKSCDDNGLTTATP 945
P + PL+KS D+G++ ATP
Sbjct: 408 GPLIV-YPLNKSMWDDGMSAATP 429
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 34.3 bits (77), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 75/185 (40%), Gaps = 23/185 (12%)
Query: 514 SSFADMKMLKSLDISYNQLTGEIPDRMAIGCF----SLEILALSNNNLQGHIFSKKFNLT 569
++F + L L++ YNQL ++ G F L L L+NN L +LT
Sbjct: 53 ATFRGLTKLTWLNLDYNQL-----QTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLT 107
Query: 570 NLMRLQLDGNKFIGEIPKSLSKCYLLGGLYLSDNHLSGKIPRWLGNLSALEDIIMPNNNL 629
L +L L GN+ + L L L+ N L L+ L+ + + N L
Sbjct: 108 QLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQL 167
Query: 630 EGPIPIEFCQLDYLKILDLSNNTIFGTLPSCFSPAYIEEIHLSK------NKIEGRLESI 683
+ F +L L+ + T+FG C + E ++LS+ NK++
Sbjct: 168 QSVPHGAFDRLGKLQTI-----TLFGNQFDC---SRCETLYLSQWIRENSNKVKDGTGQN 219
Query: 684 IHYSP 688
+H SP
Sbjct: 220 LHESP 224
>pdb|2QKN|A Chain A, Crystal Structure Of Maize Cytokinin OxidaseDEHYDROGENASE
COMPLEXED With Phenylurea Inhibitor Cppu
pdb|3BW7|A Chain A, Maize Cytokinin OxidaseDEHYDROGENASE COMPLEXED WITH THE
ALLENIC Cytokinin Analog Ha-1
pdb|3C0P|A Chain A, Maize Cytokinin OxidaseDEHYDROGENASE COMPLEXED WITH THE
ALLENIC Cytokinin Analog Ha-8
pdb|3DQ0|A Chain A, Maize Cytokinin OxidaseDEHYDROGENASE COMPLEXED WITH
N6-(3-Methoxy- Phenyl)adenine
pdb|3S1C|A Chain A, Maize Cytokinin OxidaseDEHYDROGENASE COMPLEXED WITH N6-
Isopentenyladenosine
Length = 516
Score = 34.3 bits (77), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 44/83 (53%), Gaps = 11/83 (13%)
Query: 871 DLSYNLLLGKIPPQLIVLNTLAVFRVANNNLSGKIPDRVAQFSTFEEDSYEG-------- 922
D++Y L ++ + + LN L ++RV + L+ +P ++ + F+ ++G
Sbjct: 350 DVAYAAFLDRVHGEEVALNKLGLWRVPHPWLNMFVPR--SRIADFDRGVFKGILQGTDIV 407
Query: 923 NPFLCGLPLSKSCDDNGLTTATP 945
P + PL+KS D+G++ ATP
Sbjct: 408 GPLIV-YPLNKSMWDDGMSAATP 429
>pdb|2QPM|A Chain A, Leu492ala Mutant Of Maize Cytokinin OxidaseDEHYDROGENASE
COMPLEXED With Benzylurea Inhibitor Cpbu
pdb|3KJM|A Chain A, Leu492ala Mutant Of Maize Cytokinin OxidaseDEHYDROGENASE
COMPLEXED With Phenylurea Inhibitor Cppu
Length = 516
Score = 34.3 bits (77), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 44/83 (53%), Gaps = 11/83 (13%)
Query: 871 DLSYNLLLGKIPPQLIVLNTLAVFRVANNNLSGKIPDRVAQFSTFEEDSYEG-------- 922
D++Y L ++ + + LN L ++RV + L+ +P ++ + F+ ++G
Sbjct: 350 DVAYAAFLDRVHGEEVALNKLGLWRVPHPWLNMFVPR--SRIADFDRGVFKGILQGTDIV 407
Query: 923 NPFLCGLPLSKSCDDNGLTTATP 945
P + PL+KS D+G++ ATP
Sbjct: 408 GPLIV-YPLNKSMWDDGMSAATP 429
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 33.9 bits (76), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 62/133 (46%), Gaps = 20/133 (15%)
Query: 495 LSGLMDLNLSRNAF----------NGS----IPSSFADMKMLKSLDISYNQLTGEIPDRM 540
LS L N+S N F NG+ +P+ ++ L+ LD+S+N+LT +P +
Sbjct: 231 LSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTS-LPAEL 289
Query: 541 AIGCFSLEILALSNNNLQGHIFSKKF-NLTNLMRLQLDGNKFIGEIPKSLSKCYLLGGL- 598
CF L+ +N + +F NL NL L ++GN + K L++ + G +
Sbjct: 290 G-SCFQLKYFYFFDNMVT--TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIF 346
Query: 599 YLSDNHLSGKIPR 611
YL DN +P
Sbjct: 347 YLRDNRPEIPLPH 359
Score = 30.4 bits (67), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 29/45 (64%), Gaps = 2/45 (4%)
Query: 824 LSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIE 868
L+ N LT E+P +I L+ +R L+LSHN LT ++P + Q++
Sbjct: 254 LNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLK 296
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 33.5 bits (75), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 91/357 (25%), Positives = 143/357 (40%), Gaps = 53/357 (14%)
Query: 535 EIPDRMAIGCFSLEILALSNNNLQGHIFS----KKFN-LTNLMRLQLDGNKFIGEIPKSL 589
+I M G + + +L NLQ H FS F T L L L G +P +
Sbjct: 239 DISSAMLKGLCEMSVESL---NLQEHRFSDISSTTFQCFTQLQELDLTATHLKG-LPSGM 294
Query: 590 SKCYLLGGLYLSDNHLSGKIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQ-LDYLKILDL 648
LL L LS NH N +L + + N + + + + L L+ LDL
Sbjct: 295 KGLNLLKKLVLSVNHFDQLCQISAANFPSLTHLYIRGNVKKLHLGVGCLEKLGNLQTLDL 354
Query: 649 SNNTIFGTLPSCFSP-----AYIEEIHLSKNKIEGRLESIIHYSPYLMTLDLSYNCLHGS 703
S+N I + C S ++++ ++LS N+ G P L LDL++ LH +
Sbjct: 355 SHNDIEAS--DCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTRLHIN 412
Query: 704 IPTWIDRLPQLSYLLLANNYIEGEIPIQICQLKEVRLIDLSHNNLSGHIPPCLVNTALN- 762
P L +L + N + C +D S+ +L +P V LN
Sbjct: 413 APQ--SPFQNLHFLQVLN--------LTYC------FLDTSNQHLLAGLP---VLRHLNL 453
Query: 763 EGYHEAVAPISSSSDDASTYVLPSVAPNGSPIGEEETVQFTTKNMSYYYQGRI--LMSMS 820
+G H I+ T +L +V G E + ++ + Q L MS
Sbjct: 454 KGNHFQDGTITK------TNLLQTV-------GSLEVLILSSCGLLSIDQQAFHSLGKMS 500
Query: 821 GIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLL 877
+DLS N LT + + +L I LNL+ N++ P L Q +++LS+N L
Sbjct: 501 HVDLSHNSLTCDSIDSLSHLKGIY-LNLAANSINIISPRLLPILSQQSTINLSHNPL 556
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 58/253 (22%), Positives = 101/253 (39%), Gaps = 36/253 (14%)
Query: 477 DVSTNFFRGHIPVEIGTYLSGLMDLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGEI 536
D+S+ +G + + + LNL + F+ ++F L+ LD++ L G +
Sbjct: 239 DISSAMLKGLCEMSVES-------LNLQEHRFSDISSTTFQCFTQLQELDLTATHLKG-L 290
Query: 537 PDRMAIGCFSLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPKSLSKCYLLG 596
P M G L+ L LS N+ N +L L + GN
Sbjct: 291 PSGMK-GLNLLKKLVLSVNHFDQLCQISAANFPSLTHLYIRGN----------------- 332
Query: 597 GLYLSDNHLSGKIPRWLGNLSALEDIIMPNNNLEGP--IPIEFCQLDYLKILDLSNNTIF 654
+ HL LGNL L+ + +N++E ++ L +L+ L+LS+N
Sbjct: 333 ---VKKLHLGVGCLEKLGNLQTLD---LSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPL 386
Query: 655 GTLPSCFSPA-YIEEIHLSKNKIE-GRLESIIHYSPYLMTLDLSYNCLHGSIPTWIDRLP 712
G F +E + L+ ++ +S +L L+L+Y L S + LP
Sbjct: 387 GLQSQAFKECPQLELLDLAFTRLHINAPQSPFQNLHFLQVLNLTYCFLDTSNQHLLAGLP 446
Query: 713 QLSYLLLANNYIE 725
L +L L N+ +
Sbjct: 447 VLRHLNLKGNHFQ 459
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 44/101 (43%), Gaps = 10/101 (9%)
Query: 816 LMSMSGIDLSCNKLTGE--IPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLS 873
L ++ +DLS N + Q+ L+ ++ LNLSHN G F Q+E LDL+
Sbjct: 346 LGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLA 405
Query: 874 YNLLLGKIPPQ-------LIVLN-TLAVFRVANNNLSGKIP 906
+ L P L VLN T +N +L +P
Sbjct: 406 FTRLHINAPQSPFQNLHFLQVLNLTYCFLDTSNQHLLAGLP 446
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 33.5 bits (75), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 570 NLMRLQLDGNKFIGEIPKSLSKCYLLGGLYLSDNHLSGKIPRWLGNLSALEDIIMPNNNL 629
++ L LDGN+F +PK LS L + LS+N +S + N++ L +I+ N L
Sbjct: 32 DVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90
Query: 630 EGPIPIEFCQLDYLKILDLSNNTI 653
P F L L++L L N I
Sbjct: 91 RCIPPRTFDGLKSLRLLSLHGNDI 114
Score = 33.5 bits (75), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 42/95 (44%)
Query: 833 IPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLLGKIPPQLIVLNTLA 892
+P ++ + ++LS+N ++ +FSN+ Q+ +L LSYN L P L +L
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLR 105
Query: 893 VFRVANNNLSGKIPDRVAQFSTFEEDSYEGNPFLC 927
+ + N++S S + NP C
Sbjct: 106 LLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140
Score = 33.1 bits (74), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 45/85 (52%), Gaps = 6/85 (7%)
Query: 477 DVSTNFFRGH----IPVEIGTYLSGLMDLNLSRNAFNGSIPSSFADMKMLKSLDISYNQL 532
DV+ + G+ +P E+ Y L ++LS N + SF++M L +L +SYN+L
Sbjct: 32 DVTELYLDGNQFTLVPKELSNY-KHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90
Query: 533 TGEIPDRMAIGCFSLEILALSNNNL 557
IP R G SL +L+L N++
Sbjct: 91 RC-IPPRTFDGLKSLRLLSLHGNDI 114
>pdb|3S1D|A Chain A, Glu381ser Mutant Of Maize Cytokinin OxidaseDEHYDROGENASE
COMPLEXED With N6-Isopentenyladenosine
Length = 516
Score = 33.1 bits (74), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 43/84 (51%), Gaps = 11/84 (13%)
Query: 871 DLSYNLLLGKIPPQLIVLNTLAVFRVANNNLSGKIPDRVAQFSTFEEDSYEG-------- 922
D++Y L ++ + LN L ++RV + L+ +P ++ + F+ ++G
Sbjct: 350 DVAYAAFLDRVHGSEVALNKLGLWRVPHPWLNMFVPR--SRIADFDRGVFKGILQGTDIV 407
Query: 923 NPFLCGLPLSKSCDDNGLTTATPE 946
P + PL+KS D+G++ ATP
Sbjct: 408 GPLIV-YPLNKSMWDDGMSAATPS 430
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 33.1 bits (74), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 34/60 (56%)
Query: 818 SMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLL 877
++ +DLS N++T + + ++AL L+ N + +FS+L +E LDLSYN L
Sbjct: 53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL 112
>pdb|3S1E|A Chain A, Pro427gln Mutant Of Maize Cytokinin OxidaseDEHYDROGENASE
COMPLEXED With N6-Isopentenyladenine
Length = 516
Score = 32.7 bits (73), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Query: 871 DLSYNLLLGKIPPQLIVLNTLAVFRVANNNLSGKIP-DRVAQFST-FEEDSYEGNPFLCG 928
D++Y L ++ + + LN L ++RV + L+ +P R+A F + +G +
Sbjct: 350 DVAYAAFLDRVHGEEVALNKLGLWRVPHPWLNMFVPRSRIADFDRGVFKGILQGTDIVGQ 409
Query: 929 L---PLSKSCDDNGLTTATP 945
L PL+KS D+G++ ATP
Sbjct: 410 LIVYPLNKSMWDDGMSAATP 429
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 32.7 bits (73), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 58/132 (43%), Gaps = 44/132 (33%)
Query: 496 SGLMDLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLT----GEIPDRMAIGCFSLEILA 551
SG+ D R+ SIPS +KSLD+S+N++T G++ C +L++L
Sbjct: 33 SGVCD---GRSRSFTSIPSGLT--AAMKSLDLSFNKITYIGHGDLR-----ACANLQVLI 82
Query: 552 LSNNNLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPKSLSKCYLLGGLY---LSDNHLSGK 608
L ++ + ++G+ F Y LG L LSDNHLS
Sbjct: 83 LKSSRIN----------------TIEGDAF-----------YSLGSLEHLDLSDNHLSSL 115
Query: 609 IPRWLGNLSALE 620
W G LS+L+
Sbjct: 116 SSSWFGPLSSLK 127
Score = 30.8 bits (68), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 75/174 (43%), Gaps = 20/174 (11%)
Query: 473 LATLDVSTNFFRGHIPV-EIGTYLSGLMDLNLSRNAFNGSIPSSFADMKMLKSLDISYNQ 531
L TL +S N R EI L L L++SRN F+ +P S + ++ L++S
Sbjct: 389 LQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTG 447
Query: 532 LTGEIPDRMAIGCF--SLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPKSL 589
+ R+ C +LE+L +SNNNL S L L L + NK SL
Sbjct: 448 I------RVVKTCIPQTLEVLDVSNNNLD----SFSLFLPRLQELYISRNKLKTLPDASL 497
Query: 590 SKCYLLGGLYLSDNHLSGKIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLDYL 643
L+ + ++ N L L++L+ I + N + P ++DYL
Sbjct: 498 FPVLLV--MKIASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP----RIDYL 545
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 32.7 bits (73), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 52/117 (44%), Gaps = 41/117 (35%)
Query: 511 SIPSSFADMKMLKSLDISYNQLT----GEIPDRMAIGCFSLEILALSNNNLQGHIFSKKF 566
SIPS +KSLD+S+N++T G++ C +L++L L ++ +
Sbjct: 19 SIPSGLT--AAMKSLDLSFNKITYIGHGDLR-----ACANLQVLILKSSRIN-------- 63
Query: 567 NLTNLMRLQLDGNKFIGEIPKSLSKCYLLGGLY---LSDNHLSGKIPRWLGNLSALE 620
++G+ F Y LG L LSDNHLS W G LS+L+
Sbjct: 64 --------TIEGDAF-----------YSLGSLEHLDLSDNHLSSLSSSWFGPLSSLK 101
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 75/174 (43%), Gaps = 20/174 (11%)
Query: 473 LATLDVSTNFFRGHIPV-EIGTYLSGLMDLNLSRNAFNGSIPSSFADMKMLKSLDISYNQ 531
L TL +S N R EI L L L++SRN F+ +P S + ++ L++S
Sbjct: 363 LQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTG 421
Query: 532 LTGEIPDRMAIGCF--SLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPKSL 589
+ R+ C +LE+L +SNNNL S L L L + NK SL
Sbjct: 422 I------RVVKTCIPQTLEVLDVSNNNLD----SFSLFLPRLQELYISRNKLKTLPDASL 471
Query: 590 SKCYLLGGLYLSDNHLSGKIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLDYL 643
L+ + +S N L L++L+ I + N + P ++DYL
Sbjct: 472 FPVLLV--MKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP----RIDYL 519
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 32.7 bits (73), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 34/60 (56%)
Query: 818 SMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLL 877
++ +DLS N++T + + ++AL L+ N + +FS+L +E LDLSYN L
Sbjct: 27 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL 86
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 75/185 (40%), Gaps = 23/185 (12%)
Query: 514 SSFADMKMLKSLDISYNQLTGEIPDRMAIGCF----SLEILALSNNNLQGHIFSKKFNLT 569
++F + L L++ YNQL ++ G F L L L+NN L +LT
Sbjct: 53 ATFRGLTKLTWLNLDYNQL-----QTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLT 107
Query: 570 NLMRLQLDGNKFIGEIPKSLSKCYLLGGLYLSDNHLSGKIPRWLGNLSALEDIIMPNNNL 629
L +L L GN+ + L L L+ N L L+ L+ + + N L
Sbjct: 108 QLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQL 167
Query: 630 EGPIPIEFCQLDYLKILDLSNNTIFGTLPSCFSPAYIEEIHLSK------NKIEGRLESI 683
+ F +L L+ + T+FG C + E ++LS+ NK++
Sbjct: 168 QSVPHGAFDRLGKLQTI-----TLFGNQFDC---SRCEILYLSQWIRENSNKVKDGTGQN 219
Query: 684 IHYSP 688
+H SP
Sbjct: 220 LHESP 224
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 59/213 (27%), Positives = 90/213 (42%), Gaps = 27/213 (12%)
Query: 487 IPVEIGTYLSGLMDLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGEIPDRMAIGCFS 546
I V +L L L LSRN +F + L +L++ N+LT IP+ +
Sbjct: 79 IKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT-TIPNGAFVYLSK 137
Query: 547 LEILALSNNNLQGHIFSKKFN-LTNLMRLQLDGNKFIGEIPK------------SLSKCY 593
L+ L L NN ++ I S FN + +L RL L K + I + +L+ C
Sbjct: 138 LKELWLRNNPIES-IPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN 196
Query: 594 L-----------LGGLYLSDNHLSGKIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLDY 642
L L L LS NHLS P L L+ + M + ++ F L
Sbjct: 197 LREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQS 256
Query: 643 LKILDLSNNTIFGTLPSCFSP-AYIEEIHLSKN 674
L ++L++N + F+P ++E IHL N
Sbjct: 257 LVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 53/200 (26%), Positives = 82/200 (41%), Gaps = 39/200 (19%)
Query: 586 PKSLSKCYLLGGLYLSDNHLSGKIPRWL-GNLSALEDIIMPNNNLEGPIPIEFCQLDYLK 644
P LL L L N LS +PR + N L + M NNNLE F L+
Sbjct: 110 PHVFQNVPLLTVLVLERNDLSS-LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQ 168
Query: 645 ILDLSNNTI----FGTLPSCFS-------------PAYIEEIHLSKNKI---------EG 678
L LS+N + +PS F P +EE+ S N I E
Sbjct: 169 NLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVEL 228
Query: 679 RLESIIHYS----------PYLMTLDLSYNCLHGSIPTWIDRLPQLSYLLLANNYIEGEI 728
+ + H + P L+ +DLSYN L + ++ +L L ++NN + +
Sbjct: 229 TILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-L 287
Query: 729 PIQICQLKEVRLIDLSHNNL 748
+ + ++++DLSHN+L
Sbjct: 288 NLYGQPIPTLKVLDLSHNHL 307
Score = 31.2 bits (69), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 51/113 (45%), Gaps = 18/113 (15%)
Query: 497 GLMDLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTG------EIPDRMAIGCFSLEIL 550
GL++++LS N + F M+ L+ L IS N+L IP +L++L
Sbjct: 249 GLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIP--------TLKVL 300
Query: 551 ALSNNNLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPKSLSKCYLLGGLYLSDN 603
LS+N+L H+ + L L LD N + LS + L L LS N
Sbjct: 301 DLSHNHL-LHVERNQPQFDRLENLYLDHNSIVT---LKLSTHHTLKNLTLSHN 349
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 61/133 (45%), Gaps = 6/133 (4%)
Query: 598 LYLSDNHLSGKIPRWLGNLSALEDIIMPNNNLEGPIPIE-FCQLDYLKILDLSNNTIFGT 656
LYL DN ++ P +L L+++ + +N L G +P+ F L L +LDL N +
Sbjct: 45 LYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQL-TV 102
Query: 657 LPSCF--SPAYIEEIHLSKNKIEGRLESIIHYSPYLMTLDLSYNCLHGSIPTWIDRLPQL 714
LPS +++E+ + NK+ L I +L L L N L DRL L
Sbjct: 103 LPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSL 161
Query: 715 SYLLLANNYIEGE 727
++ L N + E
Sbjct: 162 THAYLFGNPWDCE 174
>pdb|1L0Q|A Chain A, Tandem Yvtn Beta-Propeller And Pkd Domains From An
Archaeal Surface Layer Protein
pdb|1L0Q|B Chain B, Tandem Yvtn Beta-Propeller And Pkd Domains From An
Archaeal Surface Layer Protein
pdb|1L0Q|C Chain C, Tandem Yvtn Beta-Propeller And Pkd Domains From An
Archaeal Surface Layer Protein
pdb|1L0Q|D Chain D, Tandem Yvtn Beta-Propeller And Pkd Domains From An
Archaeal Surface Layer Protein
Length = 391
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 88/207 (42%), Gaps = 36/207 (17%)
Query: 643 LKILDLSNNTIFGTLPSCFSPAYIEEIHLSKNKIEGRLESIIH-YSPYLMTLDLSYNCLH 701
+ I+D + N + T+P+ SP + + +S +G+ + + S L +D + N +
Sbjct: 56 VSIIDTATNNVIATVPAGSSP---QGVAVSP---DGKQVYVTNXASSTLSVIDTTSNTVA 109
Query: 702 GSIPTWIDRL-----PQLSYLLLANNYIEGEIPIQICQLKEVRLIDLSHNNLS-GHIPPC 755
G++ T L P L + NN G+ + + +I N +S G P
Sbjct: 110 GTVKTGKSPLGLALSPDGKKLYVTNN---GDKTVSVINTVTKAVI----NTVSVGRSPKG 162
Query: 756 LVNTALNEGYHEAVAPISSSS----DDASTYVLPSV----APNGSPIGEEETVQFTTKNM 807
+ T +G VA S S D + V+ +V AP+G + E T + T N+
Sbjct: 163 IAVTP--DGTKVYVANFDSXSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVT-NV 219
Query: 808 SYYYQGRILMSMSGIDLSCNKLTGEIP 834
Y+ ++S ID NK+T IP
Sbjct: 220 DKYFN-----TVSXIDTGTNKITARIP 241
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Query: 484 RGHIPVEIGTYL-SGLMDLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGEIPDRMAI 542
RG EI T L + ++ L +N P +F+ K L+ +D+S NQ++ PD
Sbjct: 19 RGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQ- 77
Query: 543 GCFSLEILALSNNNL 557
G SL L L N +
Sbjct: 78 GLRSLNSLVLYGNKI 92
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Query: 484 RGHIPVEIGTYL-SGLMDLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGEIPDRMAI 542
RG EI T L + ++ L +N P +F+ K L+ +D+S NQ++ PD
Sbjct: 19 RGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQ- 77
Query: 543 GCFSLEILALSNNNL 557
G SL L L N +
Sbjct: 78 GLRSLNSLVLYGNKI 92
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 31.2 bits (69), Expect = 3.4, Method: Composition-based stats.
Identities = 44/179 (24%), Positives = 77/179 (43%), Gaps = 23/179 (12%)
Query: 495 LSGLMDLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGEIPDRMAI--------GCFS 546
+GL L L+RN ++P+S A + L+ L I E+P+ +A G +
Sbjct: 126 FAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVN 184
Query: 547 LEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNKF------IGEIPKSLSKCYLLGGLYL 600
L+ L L ++ + + NL NL L++ + I +PK L + L G L
Sbjct: 185 LQSLRLEWTGIRS-LPASIANLQNLKSLKIRNSPLSALGPAIHHLPK-LEELDLRGCTAL 242
Query: 601 SDNHLSGKIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLDYLKILDLSNNTIFGTLPS 659
+ P G + L+ +I+ + + +P++ +L L+ LDL LPS
Sbjct: 243 RN------YPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPS 295
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 30.8 bits (68), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 34/57 (59%), Gaps = 5/57 (8%)
Query: 824 LSC--NKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNL-KQIESLDLSYNLL 877
L C N+L G++P G ++ +LNL++N +T IP F +Q+E+L ++N L
Sbjct: 335 LECLYNQLEGKLPA-FGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKL 389
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 30.4 bits (67), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 61/137 (44%), Gaps = 14/137 (10%)
Query: 498 LMDLNLSRNAF-----NGSIPSSFADMKMLKSLDISYNQLTGEIPDRMAIGCFSLEILAL 552
L LNL R +G++P +L +LD+S+NQL +P + +L +L +
Sbjct: 57 LTQLNLDRAELTKLQVDGTLP-------VLGTLDLSHNQLQS-LP-LLGQTLPALTVLDV 107
Query: 553 SNNNLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPKSLSKCYLLGGLYLSDNHLSGKIPRW 612
S N L L L L L GN+ P L+ L L L++N+L+
Sbjct: 108 SFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGL 167
Query: 613 LGNLSALEDIIMPNNNL 629
L L L+ +++ N+L
Sbjct: 168 LNGLENLDTLLLQENSL 184
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 30.4 bits (67), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 39/86 (45%), Gaps = 4/86 (4%)
Query: 642 YLKILDLSNNTIFGTLPSCFSPAYIEEIH---LSKNKIEGRLESIIHYSPYLMTLDLSYN 698
Y +LDLS+N + L + ++P + +H LS N + P L LDLS N
Sbjct: 40 YTALLDLSHNNL-SRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98
Query: 699 CLHGSIPTWIDRLPQLSYLLLANNYI 724
LH L L LLL NN+I
Sbjct: 99 HLHTLDEFLFSDLQALEVLLLYNNHI 124
>pdb|3O53|A Chain A, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
pdb|3O53|B Chain B, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
Length = 317
Score = 30.4 bits (67), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 7/81 (8%)
Query: 822 IDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLLGKI 881
+DLS N L+ + T++ LNLS N L T+ +L + +LDL+ N +
Sbjct: 39 LDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYV---- 92
Query: 882 PPQLIVLNTLAVFRVANNNLS 902
+L+V ++ ANNN+S
Sbjct: 93 -QELLVGPSIETLHAANNNIS 112
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 30.0 bits (66), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 61/137 (44%), Gaps = 14/137 (10%)
Query: 498 LMDLNLSRNAF-----NGSIPSSFADMKMLKSLDISYNQLTGEIPDRMAIGCFSLEILAL 552
L LNL R +G++P +L +LD+S+NQL +P + +L +L +
Sbjct: 57 LTQLNLDRAELTKLQVDGTLP-------VLGTLDLSHNQLQS-LP-LLGQTLPALTVLDV 107
Query: 553 SNNNLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPKSLSKCYLLGGLYLSDNHLSGKIPRW 612
S N L L L L L GN+ P L+ L L L++N+L+
Sbjct: 108 SFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGL 167
Query: 613 LGNLSALEDIIMPNNNL 629
L L L+ +++ N+L
Sbjct: 168 LNGLENLDTLLLQENSL 184
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 30.0 bits (66), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 61/137 (44%), Gaps = 14/137 (10%)
Query: 498 LMDLNLSRNAF-----NGSIPSSFADMKMLKSLDISYNQLTGEIPDRMAIGCFSLEILAL 552
L LNL R +G++P +L +LD+S+NQL +P + +L +L +
Sbjct: 57 LTQLNLDRAELTKLQVDGTLP-------VLGTLDLSHNQLQS-LP-LLGQTLPALTVLDV 107
Query: 553 SNNNLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPKSLSKCYLLGGLYLSDNHLSGKIPRW 612
S N L L L L L GN+ P L+ L L L++N+L+
Sbjct: 108 SFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGL 167
Query: 613 LGNLSALEDIIMPNNNL 629
L L L+ +++ N+L
Sbjct: 168 LNGLENLDTLLLQENSL 184
>pdb|3OJA|A Chain A, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 487
Score = 30.0 bits (66), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 7/81 (8%)
Query: 822 IDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLLGKI 881
+DLS N L+ + T++ LNLS N L T+ +L + +LDL+ N +
Sbjct: 39 LDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYV---- 92
Query: 882 PPQLIVLNTLAVFRVANNNLS 902
+L+V ++ ANNN+S
Sbjct: 93 -QELLVGPSIETLHAANNNIS 112
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 30.0 bits (66), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 59/127 (46%), Gaps = 9/127 (7%)
Query: 503 LSRNAFNGSIPSSFADMKMLKSLDISYNQLTGEIPDRMAIGCFSLEILALSNNNLQGHIF 562
L++ +G++P +L +LD+S+NQL +P + +L +L +S N L
Sbjct: 67 LTKLQVDGTLP-------VLGTLDLSHNQLQS-LP-LLGQTLPALTVLDVSFNRLTSLPL 117
Query: 563 SKKFNLTNLMRLQLDGNKFIGEIPKSLSKCYLLGGLYLSDNHLSGKIPRWLGNLSALEDI 622
L L L L GN+ P L+ L L L++N+L+ L L L+ +
Sbjct: 118 GALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTL 177
Query: 623 IMPNNNL 629
++ N+L
Sbjct: 178 LLQENSL 184
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 30.0 bits (66), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 59/127 (46%), Gaps = 9/127 (7%)
Query: 503 LSRNAFNGSIPSSFADMKMLKSLDISYNQLTGEIPDRMAIGCFSLEILALSNNNLQGHIF 562
L++ +G++P +L +LD+S+NQL +P + +L +L +S N L
Sbjct: 68 LTKLQVDGTLP-------VLGTLDLSHNQLQS-LP-LLGQTLPALTVLDVSFNRLTSLPL 118
Query: 563 SKKFNLTNLMRLQLDGNKFIGEIPKSLSKCYLLGGLYLSDNHLSGKIPRWLGNLSALEDI 622
L L L L GN+ P L+ L L L++N+L+ L L L+ +
Sbjct: 119 GALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTL 178
Query: 623 IMPNNNL 629
++ N+L
Sbjct: 179 LLQENSL 185
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,256,943
Number of Sequences: 62578
Number of extensions: 1125934
Number of successful extensions: 3080
Number of sequences better than 100.0: 101
Number of HSP's better than 100.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 64
Number of HSP's that attempted gapping in prelim test: 2209
Number of HSP's gapped (non-prelim): 629
length of query: 1021
length of database: 14,973,337
effective HSP length: 109
effective length of query: 912
effective length of database: 8,152,335
effective search space: 7434929520
effective search space used: 7434929520
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)