Query 001719
Match_columns 1021
No_of_seqs 864 out of 5888
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 07:41:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001719.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001719hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 1.1E-68 2.3E-73 682.1 50.3 371 475-930 240-611 (968)
2 PLN00113 leucine-rich repeat r 100.0 2.6E-57 5.7E-62 577.6 41.6 518 341-930 70-588 (968)
3 KOG4194 Membrane glycoprotein 100.0 1.3E-37 2.7E-42 331.2 5.5 374 498-931 80-457 (873)
4 KOG0472 Leucine-rich repeat pr 100.0 5.6E-39 1.2E-43 327.4 -11.9 457 418-926 64-541 (565)
5 KOG4194 Membrane glycoprotein 100.0 1.2E-36 2.7E-41 323.7 4.7 370 449-876 80-450 (873)
6 KOG0472 Leucine-rich repeat pr 100.0 6.6E-39 1.4E-43 326.9 -12.7 495 340-924 45-562 (565)
7 KOG0618 Serine/threonine phosp 100.0 5.1E-34 1.1E-38 320.6 -5.3 487 135-698 21-510 (1081)
8 KOG0618 Serine/threonine phosp 100.0 2E-33 4.3E-38 315.9 -2.7 423 294-757 3-427 (1081)
9 KOG0444 Cytoskeletal regulator 100.0 4.9E-33 1.1E-37 297.6 -4.6 364 473-927 9-376 (1255)
10 KOG0444 Cytoskeletal regulator 100.0 6.5E-32 1.4E-36 289.0 -2.2 394 422-907 7-409 (1255)
11 KOG4237 Extracellular matrix p 99.9 2.4E-26 5.3E-31 235.4 -3.2 251 472-724 68-358 (498)
12 PLN03210 Resistant to P. syrin 99.9 2.1E-22 4.5E-27 256.6 26.3 307 497-876 590-904 (1153)
13 PLN03210 Resistant to P. syrin 99.9 4.3E-22 9.3E-27 253.7 27.3 340 488-900 550-904 (1153)
14 KOG4237 Extracellular matrix p 99.9 3.4E-24 7.4E-29 219.7 -4.2 393 476-899 51-498 (498)
15 PRK15387 E3 ubiquitin-protein 99.9 2.1E-21 4.6E-26 228.2 17.2 193 498-749 203-395 (788)
16 PRK15387 E3 ubiquitin-protein 99.8 1.1E-20 2.4E-25 222.2 18.0 265 472-862 202-466 (788)
17 PRK15370 E3 ubiquitin-protein 99.8 5.4E-19 1.2E-23 209.8 12.0 76 497-582 179-254 (754)
18 PRK15370 E3 ubiquitin-protein 99.8 8.3E-19 1.8E-23 208.2 11.4 140 471-630 178-317 (754)
19 cd00116 LRR_RI Leucine-rich re 99.7 1.4E-18 2.9E-23 193.2 0.9 65 838-902 218-291 (319)
20 cd00116 LRR_RI Leucine-rich re 99.7 1.5E-18 3.2E-23 192.9 1.0 275 573-900 2-318 (319)
21 KOG0617 Ras suppressor protein 99.7 2.9E-18 6.2E-23 156.1 -3.9 170 656-888 25-195 (264)
22 KOG0617 Ras suppressor protein 99.6 9.3E-18 2E-22 152.8 -5.9 180 684-926 29-212 (264)
23 PLN03150 hypothetical protein; 99.6 3.1E-15 6.7E-20 177.9 11.0 119 818-936 419-538 (623)
24 PLN03150 hypothetical protein; 99.4 1.2E-12 2.6E-17 155.9 12.3 151 25-223 367-526 (623)
25 KOG0532 Leucine-rich repeat (L 99.2 5.2E-13 1.1E-17 144.5 -3.2 193 640-899 74-270 (722)
26 KOG0532 Leucine-rich repeat (L 99.2 2.4E-13 5.3E-18 147.0 -5.8 175 663-903 74-248 (722)
27 COG4886 Leucine-rich repeat (L 99.2 2.4E-11 5.3E-16 138.8 6.3 123 620-746 96-219 (394)
28 COG4886 Leucine-rich repeat (L 99.1 9.3E-11 2E-15 134.1 8.4 200 644-908 96-296 (394)
29 PF14580 LRR_9: Leucine-rich r 99.1 1E-10 2.2E-15 113.5 4.3 127 105-244 17-148 (175)
30 KOG3207 Beta-tubulin folding c 99.0 3.7E-11 8E-16 126.6 -0.0 113 132-247 118-233 (505)
31 PF14580 LRR_9: Leucine-rich r 99.0 1.6E-10 3.5E-15 112.1 2.5 111 130-250 14-127 (175)
32 KOG1259 Nischarin, modulator o 99.0 1.2E-10 2.6E-15 116.3 0.5 85 817-904 329-414 (490)
33 KOG1909 Ran GTPase-activating 99.0 1.6E-11 3.5E-16 125.9 -6.2 47 179-225 87-133 (382)
34 KOG1259 Nischarin, modulator o 98.9 2.3E-10 4.9E-15 114.4 0.7 21 334-354 393-413 (490)
35 KOG1909 Ran GTPase-activating 98.9 1.6E-10 3.5E-15 118.7 -0.5 167 77-248 31-225 (382)
36 KOG3207 Beta-tubulin folding c 98.9 4E-10 8.7E-15 119.0 2.2 196 362-584 143-341 (505)
37 KOG4658 Apoptotic ATPase [Sign 98.9 1.6E-09 3.6E-14 131.6 5.8 129 107-247 523-653 (889)
38 KOG4658 Apoptotic ATPase [Sign 98.9 1.8E-09 3.8E-14 131.3 5.6 254 106-379 544-808 (889)
39 PF08263 LRRNT_2: Leucine rich 98.8 7E-09 1.5E-13 75.3 3.6 40 28-72 1-43 (43)
40 PF13855 LRR_8: Leucine rich r 98.7 7.8E-09 1.7E-13 82.4 2.9 59 818-876 2-60 (61)
41 PF13855 LRR_8: Leucine rich r 98.7 1.1E-08 2.4E-13 81.5 3.4 61 841-901 1-61 (61)
42 KOG0531 Protein phosphatase 1, 98.6 6.1E-09 1.3E-13 119.1 -0.2 129 105-249 70-199 (414)
43 KOG0531 Protein phosphatase 1, 98.5 2.1E-08 4.4E-13 114.7 1.4 133 102-250 90-222 (414)
44 KOG2120 SCF ubiquitin ligase, 98.5 3.8E-09 8.2E-14 105.9 -6.6 162 185-376 186-349 (419)
45 KOG2982 Uncharacterized conser 98.4 9.5E-08 2.1E-12 96.1 1.3 66 339-404 198-263 (418)
46 KOG1859 Leucine-rich repeat pr 98.3 8.9E-09 1.9E-13 115.0 -7.6 183 100-328 102-293 (1096)
47 KOG2120 SCF ubiquitin ligase, 98.3 5.8E-08 1.3E-12 97.6 -2.9 183 289-481 185-373 (419)
48 KOG2982 Uncharacterized conser 98.1 4.6E-07 9.9E-12 91.3 -0.5 89 105-195 69-157 (418)
49 COG5238 RNA1 Ran GTPase-activa 98.1 4.3E-07 9.4E-12 90.3 -1.4 47 179-225 87-133 (388)
50 KOG4579 Leucine-rich repeat (L 98.1 1.7E-07 3.7E-12 83.5 -4.3 81 819-902 55-136 (177)
51 KOG1859 Leucine-rich repeat pr 98.1 1.5E-07 3.2E-12 105.6 -6.0 205 339-558 83-292 (1096)
52 KOG4341 F-box protein containi 98.0 4.1E-07 9E-12 96.1 -2.7 64 181-247 161-227 (483)
53 KOG4341 F-box protein containi 98.0 6.6E-07 1.4E-11 94.6 -2.6 137 445-581 292-438 (483)
54 KOG4579 Leucine-rich repeat (L 98.0 3.9E-07 8.5E-12 81.2 -3.8 100 821-924 31-134 (177)
55 COG5238 RNA1 Ran GTPase-activa 97.9 1.1E-06 2.4E-11 87.5 -3.0 95 154-248 25-132 (388)
56 PF12799 LRR_4: Leucine Rich r 97.8 1.9E-05 4E-10 57.4 3.7 36 842-878 2-37 (44)
57 PRK15386 type III secretion pr 97.7 9.6E-05 2.1E-09 81.0 7.8 54 663-722 51-104 (426)
58 PF12799 LRR_4: Leucine Rich r 97.6 4.4E-05 9.5E-10 55.4 3.1 37 818-855 2-38 (44)
59 KOG1644 U2-associated snRNP A' 97.6 0.00011 2.3E-09 70.7 6.0 106 136-247 43-151 (233)
60 PRK15386 type III secretion pr 97.5 0.00038 8.3E-09 76.4 8.8 55 543-603 50-104 (426)
61 KOG1644 U2-associated snRNP A' 97.5 0.00018 3.9E-09 69.3 5.4 113 106-225 41-153 (233)
62 KOG3665 ZYG-1-like serine/thre 97.4 9.3E-05 2E-09 88.4 3.5 138 106-252 121-266 (699)
63 PF13306 LRR_5: Leucine rich r 97.3 0.00049 1.1E-08 64.5 6.9 84 490-577 6-89 (129)
64 KOG3665 ZYG-1-like serine/thre 97.3 5.8E-05 1.3E-09 90.1 0.0 108 289-400 122-230 (699)
65 PF13306 LRR_5: Leucine rich r 97.2 0.00085 1.8E-08 62.9 6.8 124 514-644 6-129 (129)
66 KOG2739 Leucine-rich acidic nu 96.9 0.00045 9.7E-09 69.7 2.1 88 154-245 60-152 (260)
67 KOG2739 Leucine-rich acidic nu 96.9 0.00043 9.4E-09 69.8 1.7 111 105-222 41-153 (260)
68 KOG1947 Leucine rich repeat pr 96.3 0.00091 2E-08 79.0 -0.7 62 495-556 242-306 (482)
69 KOG1947 Leucine rich repeat pr 96.2 0.00099 2.2E-08 78.6 -1.0 36 211-246 242-279 (482)
70 KOG2123 Uncharacterized conser 96.1 0.00021 4.6E-09 71.9 -5.6 102 133-242 17-123 (388)
71 PF00560 LRR_1: Leucine Rich R 95.4 0.0046 1E-07 37.2 0.3 19 843-862 2-20 (22)
72 PF00560 LRR_1: Leucine Rich R 95.4 0.0067 1.4E-07 36.5 0.9 19 867-886 2-20 (22)
73 KOG2123 Uncharacterized conser 95.3 0.0019 4.2E-08 65.2 -2.7 83 285-371 37-123 (388)
74 KOG4308 LRR-containing protein 93.1 0.001 2.2E-08 76.2 -11.5 88 109-197 89-185 (478)
75 KOG4308 LRR-containing protein 92.4 0.0017 3.7E-08 74.3 -10.8 178 101-303 109-304 (478)
76 KOG0473 Leucine-rich repeat pr 90.0 0.0099 2.2E-07 58.7 -6.5 82 818-902 43-124 (326)
77 PF13504 LRR_7: Leucine rich r 90.0 0.17 3.6E-06 28.2 1.0 11 867-877 3-13 (17)
78 PF13504 LRR_7: Leucine rich r 88.6 0.32 6.9E-06 27.1 1.5 13 521-533 2-14 (17)
79 KOG0473 Leucine-rich repeat pr 86.5 0.023 5E-07 56.1 -6.5 92 832-926 32-124 (326)
80 smart00370 LRR Leucine-rich re 85.5 0.8 1.7E-05 28.7 2.3 22 519-541 1-22 (26)
81 smart00369 LRR_TYP Leucine-ric 85.5 0.8 1.7E-05 28.7 2.3 22 519-541 1-22 (26)
82 smart00369 LRR_TYP Leucine-ric 84.7 0.79 1.7E-05 28.7 2.0 14 865-878 2-15 (26)
83 smart00370 LRR Leucine-rich re 84.7 0.79 1.7E-05 28.7 2.0 14 865-878 2-15 (26)
84 PF13516 LRR_6: Leucine Rich r 84.5 0.29 6.2E-06 30.1 -0.1 20 841-860 2-21 (24)
85 KOG3864 Uncharacterized conser 82.1 0.22 4.7E-06 48.8 -2.0 84 289-373 101-184 (221)
86 KOG3864 Uncharacterized conser 74.3 0.36 7.8E-06 47.3 -3.0 35 495-529 150-185 (221)
87 smart00365 LRR_SD22 Leucine-ri 72.9 2.9 6.3E-05 26.3 1.8 15 864-878 1-15 (26)
88 TIGR00864 PCC polycystin catio 68.1 2.2 4.8E-05 57.8 1.1 36 896-931 2-37 (2740)
89 smart00364 LRR_BAC Leucine-ric 61.7 5.5 0.00012 25.0 1.4 13 866-878 3-15 (26)
90 KOG4242 Predicted myosin-I-bin 58.7 59 0.0013 36.6 9.5 61 186-247 216-279 (553)
91 smart00368 LRR_RI Leucine rich 56.6 8.5 0.00018 24.7 1.7 14 865-878 2-15 (28)
92 KOG4242 Predicted myosin-I-bin 53.0 64 0.0014 36.4 8.6 20 447-466 165-184 (553)
93 PF12273 RCR: Chitin synthesis 32.3 31 0.00066 32.1 2.1 10 978-987 16-25 (130)
94 KOG3763 mRNA export factor TAP 26.8 48 0.001 38.2 2.7 15 496-510 270-284 (585)
95 TIGR00864 PCC polycystin catio 22.3 50 0.0011 45.8 2.1 32 823-854 1-32 (2740)
96 PF15102 TMEM154: TMEM154 prot 22.1 71 0.0015 29.9 2.4 21 969-989 66-86 (146)
97 smart00367 LRR_CC Leucine-rich 21.9 65 0.0014 20.0 1.5 11 184-194 2-12 (26)
98 PTZ00382 Variant-specific surf 20.9 57 0.0012 28.4 1.5 16 968-983 72-87 (96)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.1e-68 Score=682.13 Aligned_cols=371 Identities=37% Similarity=0.542 Sum_probs=276.1
Q ss_pred EEEcCCCCCCcccchhhhhcCCCCCEEECCCCcCCCCCCccccCCCCCCEEEcCCCcCCCccchhhhhcCCCCcEEECCC
Q 001719 475 TLDVSTNFFRGHIPVEIGTYLSGLMDLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGEIPDRMAIGCFSLEILALSN 554 (1021)
Q Consensus 475 ~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~ 554 (1021)
+|++++|.+++.+|..+.. +++|++|++++|.+.+.+|..+..+++|++|++++|.+++.+|..+. .+++|+.|++++
T Consensus 240 ~L~L~~n~l~~~~p~~l~~-l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~-~l~~L~~L~l~~ 317 (968)
T PLN00113 240 HLDLVYNNLTGPIPSSLGN-LKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVI-QLQNLEILHLFS 317 (968)
T ss_pred EEECcCceeccccChhHhC-CCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHc-CCCCCcEEECCC
Confidence 3333333333444544443 66777777777777777777777777777777777777766665443 555566666665
Q ss_pred CcccccccccccCCCCccEEEccCCcccccCCccccccCccCeEEccCCcCCCcchhhhcCCCCCcEEECCCCcccCCcc
Q 001719 555 NNLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPKSLSKCYLLGGLYLSDNHLSGKIPRWLGNLSALEDIIMPNNNLEGPIP 634 (1021)
Q Consensus 555 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p 634 (1021)
|.+.+..|..+..+++|+.|++++|.+.+.+|..+ +.+++|+.|++++|++.+.+|
T Consensus 318 n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l------------------------~~~~~L~~L~Ls~n~l~~~~p 373 (968)
T PLN00113 318 NNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNL------------------------GKHNNLTVLDLSTNNLTGEIP 373 (968)
T ss_pred CccCCcCChhHhcCCCCCEEECcCCCCcCcCChHH------------------------hCCCCCcEEECCCCeeEeeCC
Confidence 55555555555555555555555555554444444 444445555555555544455
Q ss_pred ccccCCCCCCEEEccCCccccCCCCCC-CCCcccEEEccCCccccccchhhhcCccccEEEccCCccCCCCCccccCCCC
Q 001719 635 IEFCQLDYLKILDLSNNTIFGTLPSCF-SPAYIEEIHLSKNKIEGRLESIIHYSPYLMTLDLSYNCLHGSIPTWIDRLPQ 713 (1021)
Q Consensus 635 ~~l~~l~~L~~L~Ls~n~l~~~~p~~~-~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~ 713 (1021)
..++.+++|+.|++++|++.+.+|..+ .+++|+.|++++|++++..|..+..+++|+.|++++|.+++.+|..+..+++
T Consensus 374 ~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 453 (968)
T PLN00113 374 EGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPS 453 (968)
T ss_pred hhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCC
Confidence 555555555555555555555555443 3455555556666666666667778888888888888888888888888888
Q ss_pred CcEEEcccccccccCCccccCCCCCCEEeccCCcCcccCCcccccccccccccccccccCCCCCCCcccccCCCCCCCCC
Q 001719 714 LSYLLLANNYIEGEIPIQICQLKEVRLIDLSHNNLSGHIPPCLVNTALNEGYHEAVAPISSSSDDASTYVLPSVAPNGSP 793 (1021)
Q Consensus 714 L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 793 (1021)
|+.|++++|++.+.+|..+ ..++|+.|++++|+++|.+|..+.+++
T Consensus 454 L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~--------------------------------- 499 (968)
T PLN00113 454 LQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLS--------------------------------- 499 (968)
T ss_pred CcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhh---------------------------------
Confidence 9999999999888888765 457899999999999988887765543
Q ss_pred CCCcceEEEeecCccccccccccccccEEEcccceecCcCcccccCCCCCCEEEcCCCcCccchhhcccCCCCCCEEeCc
Q 001719 794 IGEEETVQFTTKNMSYYYQGRILMSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLS 873 (1021)
Q Consensus 794 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs 873 (1021)
+|+.|+|++|+++|.+|..++.+++|++|+|++|.++|.+|..|+++++|+.|||+
T Consensus 500 ------------------------~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls 555 (968)
T PLN00113 500 ------------------------ELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLS 555 (968)
T ss_pred ------------------------ccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECC
Confidence 68899999999999999999999999999999999999999999999999999999
Q ss_pred CccCCCCCCcccccCCCCCEEEccCCcceecCCCcccccCCCCcccccCccCCCCCC
Q 001719 874 YNLLLGKIPPQLIVLNTLAVFRVANNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGLP 930 (1021)
Q Consensus 874 ~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~~gN~~lC~~~ 930 (1021)
+|+++|.+|..+..+++|+.+++++|+++|.+|.. +++.++...++.|||.+||.+
T Consensus 556 ~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~-~~~~~~~~~~~~~n~~lc~~~ 611 (968)
T PLN00113 556 QNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPST-GAFLAINASAVAGNIDLCGGD 611 (968)
T ss_pred CCcccccCChhHhcCcccCEEeccCCcceeeCCCc-chhcccChhhhcCCccccCCc
Confidence 99999999999999999999999999999999997 899999999999999999854
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=2.6e-57 Score=577.59 Aligned_cols=518 Identities=29% Similarity=0.476 Sum_probs=467.0
Q ss_pred CCCEEEccCcccccccCchhhhcCCCCceEEecccccccccchhhhccCCcccEEEccCccccccccCCCCCCcchhhcC
Q 001719 341 SLKTLYLLFTNFKGTIVNQELHNFTNLEELLLVKSDLHVSQLLQSIASFTSLKYLSIRGCVLKGALHGQDGGTFPKFLYH 420 (1021)
Q Consensus 341 ~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~p~~l~~ 420 (1021)
+++.|+++++.+.+.+ +..+..+++|+.|++++|.+.+..|...+..+++|++|++++|.+. +.+|. ..
T Consensus 70 ~v~~L~L~~~~i~~~~-~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~--------~~~p~--~~ 138 (968)
T PLN00113 70 RVVSIDLSGKNISGKI-SSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFT--------GSIPR--GS 138 (968)
T ss_pred cEEEEEecCCCccccC-ChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccc--------cccCc--cc
Confidence 3556666666666665 5667777777777777777766666555557777777777777654 23333 34
Q ss_pred CCCcCEEEecCCccccCCChhHhhcCCCCCEEECcCCcCCCCCccCccCCCCcCEEEcCCCCCCcccchhhhhcCCCCCE
Q 001719 421 QHDLKNVDLSHLNLSGKFPNWLVENNTNLKTLLLANNSLFGSFRMPIHSHQKLATLDVSTNFFRGHIPVEIGTYLSGLMD 500 (1021)
Q Consensus 421 l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~ 500 (1021)
+++|++|++++|.+++.+|.. ++++++|++|++++|.+.+..|..+..+++|++|++++|.+.+.+|..+.. +++|++
T Consensus 139 l~~L~~L~Ls~n~~~~~~p~~-~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~-l~~L~~ 216 (968)
T PLN00113 139 IPNLETLDLSNNMLSGEIPND-IGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQ-MKSLKW 216 (968)
T ss_pred cCCCCEEECcCCcccccCChH-HhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcC-cCCccE
Confidence 678999999999998888877 478999999999999999888999999999999999999999889988876 899999
Q ss_pred EECCCCcCCCCCCccccCCCCCCEEEcCCCcCCCccchhhhhcCCCCcEEECCCCcccccccccccCCCCccEEEccCCc
Q 001719 501 LNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGEIPDRMAIGCFSLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNK 580 (1021)
Q Consensus 501 L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 580 (1021)
|++++|.+.+.+|..++.+++|++|++++|.+++.+|..+. ++++|++|++++|.+.+.+|..+.++++|++|++++|.
T Consensus 217 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~ 295 (968)
T PLN00113 217 IYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLG-NLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNS 295 (968)
T ss_pred EECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHh-CCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCe
Confidence 99999999999999999999999999999999988888764 89999999999999999999999999999999999999
Q ss_pred ccccCCccccccCccCeEEccCCcCCCcchhhhcCCCCCcEEECCCCcccCCccccccCCCCCCEEEccCCccccCCCCC
Q 001719 581 FIGEIPKSLSKCYLLGGLYLSDNHLSGKIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLDYLKILDLSNNTIFGTLPSC 660 (1021)
Q Consensus 581 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~ 660 (1021)
+.+.+|..+.++++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+.+|..++.+++|+.|++++|++.+.+|..
T Consensus 296 l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~ 375 (968)
T PLN00113 296 LSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEG 375 (968)
T ss_pred eccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred C-CCCcccEEEccCCccccccchhhhcCccccEEEccCCccCCCCCccccCCCCCcEEEcccccccccCCccccCCCCCC
Q 001719 661 F-SPAYIEEIHLSKNKIEGRLESIIHYSPYLMTLDLSYNCLHGSIPTWIDRLPQLSYLLLANNYIEGEIPIQICQLKEVR 739 (1021)
Q Consensus 661 ~-~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~ 739 (1021)
+ ...+|+.|++++|++.+.+|..+..+++|+.|++++|++++.+|..+..+++|+.|++++|++++.+|..+..+++|+
T Consensus 376 ~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 455 (968)
T PLN00113 376 LCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQ 455 (968)
T ss_pred HhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCc
Confidence 7 678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccCCcCcccCCcccccccccccccccccccCCCCCCCcccccCCCCCCCCCCCCcceEEEeecCccccccccccccc
Q 001719 740 LIDLSHNNLSGHIPPCLVNTALNEGYHEAVAPISSSSDDASTYVLPSVAPNGSPIGEEETVQFTTKNMSYYYQGRILMSM 819 (1021)
Q Consensus 740 ~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 819 (1021)
.|++++|++.|.+|..+. ..+|
T Consensus 456 ~L~L~~n~~~~~~p~~~~----------------------------------------------------------~~~L 477 (968)
T PLN00113 456 MLSLARNKFFGGLPDSFG----------------------------------------------------------SKRL 477 (968)
T ss_pred EEECcCceeeeecCcccc----------------------------------------------------------cccc
Confidence 999999999988886432 1268
Q ss_pred cEEEcccceecCcCcccccCCCCCCEEEcCCCcCccchhhcccCCCCCCEEeCcCccCCCCCCcccccCCCCCEEEccCC
Q 001719 820 SGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLLGKIPPQLIVLNTLAVFRVANN 899 (1021)
Q Consensus 820 ~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N 899 (1021)
+.||+++|++++.+|..+..+++|+.|+|++|++++.+|+.++++++|++|+|++|+++|.+|..+..+++|+.|++++|
T Consensus 478 ~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N 557 (968)
T PLN00113 478 ENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQN 557 (968)
T ss_pred eEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceecCCCcccccCCCCcccccCccCCCCCC
Q 001719 900 NLSGKIPDRVAQFSTFEEDSYEGNPFLCGLP 930 (1021)
Q Consensus 900 ~l~g~ip~~~~~~~~~~~~~~~gN~~lC~~~ 930 (1021)
+++|.+|..+..+..+..+++++|+..+..|
T Consensus 558 ~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p 588 (968)
T PLN00113 558 QLSGEIPKNLGNVESLVQVNISHNHLHGSLP 588 (968)
T ss_pred cccccCChhHhcCcccCEEeccCCcceeeCC
Confidence 9999999998889999999999999887554
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=1.3e-37 Score=331.24 Aligned_cols=374 Identities=21% Similarity=0.221 Sum_probs=265.4
Q ss_pred CCEEECCCCcCCCCCCccccCCCCCCEEEcCCCcCCCccchhhhhcCCCCcEEECCCCcccccccccccCCCCccEEEcc
Q 001719 498 LMDLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGEIPDRMAIGCFSLEILALSNNNLQGHIFSKKFNLTNLMRLQLD 577 (1021)
Q Consensus 498 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 577 (1021)
-+.|++++|++....+..|.++++|+++++..|.++ .||.... ...+|+.|+|.+|.|+..-.+.+..++.|+.|||+
T Consensus 80 t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~-~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLS 157 (873)
T KOG4194|consen 80 TQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGH-ESGHLEKLDLRHNLISSVTSEELSALPALRSLDLS 157 (873)
T ss_pred eeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccc-cccceeEEeeeccccccccHHHHHhHhhhhhhhhh
Confidence 345666666666666666666666666666666666 5665432 33446666666666666555666666666666666
Q ss_pred CCcccccCCccccccCccCeEEccCCcCCCcchhhhcCCCCCcEEECCCCcccCCccccccCCCCCCEEEccCCccccCC
Q 001719 578 GNKFIGEIPKSLSKCYLLGGLYLSDNHLSGKIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLDYLKILDLSNNTIFGTL 657 (1021)
Q Consensus 578 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~ 657 (1021)
.|.++......|..-.++++|+|++|+++..-...|.++.+|.+|.|+.|+++...+..|.++++|+.|+|..|.|.-.-
T Consensus 158 rN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive 237 (873)
T KOG4194|consen 158 RNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVE 237 (873)
T ss_pred hchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeeh
Confidence 66666444445555556666666666666666666666666777777777776555556666777777777777665332
Q ss_pred CCCC-CCCcccEEEccCCccccccchhhhcCccccEEEccCCccCCCCCccccCCCCCcEEEcccccccccCCccccCCC
Q 001719 658 PSCF-SPAYIEEIHLSKNKIEGRLESIIHYSPYLMTLDLSYNCLHGSIPTWIDRLPQLSYLLLANNYIEGEIPIQICQLK 736 (1021)
Q Consensus 658 p~~~-~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~ 736 (1021)
-..| ++++|+.|.+..|++.......|..+.+++.|+|+.|+++..-..|+-++++|+.|+|++|.|..+-+..+..++
T Consensus 238 ~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsftq 317 (873)
T KOG4194|consen 238 GLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQ 317 (873)
T ss_pred hhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcc
Confidence 3334 566777777777777766667777778888888888888777777777888888888888888877777777888
Q ss_pred CCCEEeccCCcCcccCCcccccccccccccccccccCCCCCCCcccccCCCCCCCCCCCCcceEEEeecCcccccccccc
Q 001719 737 EVRLIDLSHNNLSGHIPPCLVNTALNEGYHEAVAPISSSSDDASTYVLPSVAPNGSPIGEEETVQFTTKNMSYYYQGRIL 816 (1021)
Q Consensus 737 ~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 816 (1021)
+|+.|+|++|+++.--|..+.. +
T Consensus 318 kL~~LdLs~N~i~~l~~~sf~~---------------------------------------------------------L 340 (873)
T KOG4194|consen 318 KLKELDLSSNRITRLDEGSFRV---------------------------------------------------------L 340 (873)
T ss_pred cceeEeccccccccCChhHHHH---------------------------------------------------------H
Confidence 8888888888887333333322 3
Q ss_pred ccccEEEcccceecCcCcccccCCCCCCEEEcCCCcCccchhh---cccCCCCCCEEeCcCccCCCCCCcccccCCCCCE
Q 001719 817 MSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPT---TFSNLKQIESLDLSYNLLLGKIPPQLIVLNTLAV 893 (1021)
Q Consensus 817 ~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~~~~p~---~l~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~ 893 (1021)
..|+.|.|++|+++..--..|..+++|+.|||++|.|++.|.+ .|..|++|+.|+|-+|+|......+|..+..|+.
T Consensus 341 ~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~ 420 (873)
T KOG4194|consen 341 SQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEH 420 (873)
T ss_pred HHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccce
Confidence 3677788888888855556777888899999999988887764 3778889999999999998666678888999999
Q ss_pred EEccCCcceecCCCcccccCCCCcccccCccCCCCCCC
Q 001719 894 FRVANNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGLPL 931 (1021)
Q Consensus 894 L~ls~N~l~g~ip~~~~~~~~~~~~~~~gN~~lC~~~l 931 (1021)
|||.+|.+-..-|..|.++ .++++-+..-.++|+|.+
T Consensus 421 LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflCDCql 457 (873)
T KOG4194|consen 421 LDLGDNAIASIQPNAFEPM-ELKELVMNSSSFLCDCQL 457 (873)
T ss_pred ecCCCCcceeecccccccc-hhhhhhhcccceEEeccH
Confidence 9999999888888888777 777777777788999975
No 4
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=5.6e-39 Score=327.44 Aligned_cols=457 Identities=27% Similarity=0.357 Sum_probs=313.8
Q ss_pred hcCCCCcCEEEecCCccccCCChhHhhcCCCCCEEECcCCcCCCCCccCccCCCCcCEEEcCCCCCCcccchhhhhcCCC
Q 001719 418 LYHQHDLKNVDLSHLNLSGKFPNWLVENNTNLKTLLLANNSLFGSFRMPIHSHQKLATLDVSTNFFRGHIPVEIGTYLSG 497 (1021)
Q Consensus 418 l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~ 497 (1021)
+..+..++.+++++|+++ +.|+. .+.+..++.++.++|++.. +|..+....+++.+++++|.+. ++|++++. +..
T Consensus 64 l~nL~~l~vl~~~~n~l~-~lp~a-ig~l~~l~~l~vs~n~ls~-lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~-~~~ 138 (565)
T KOG0472|consen 64 LKNLACLTVLNVHDNKLS-QLPAA-IGELEALKSLNVSHNKLSE-LPEQIGSLISLVKLDCSSNELK-ELPDSIGR-LLD 138 (565)
T ss_pred hhcccceeEEEeccchhh-hCCHH-HHHHHHHHHhhcccchHhh-ccHHHhhhhhhhhhhcccccee-ecCchHHH-Hhh
Confidence 334445556666666665 44544 2456666666666666543 4555666777777888888777 77777777 778
Q ss_pred CCEEECCCCcCCCCCCccccCCCCCCEEEcCCCcCCCccchhhhhcCCCCcEEECCCCcccccccccccCCCCccEEEcc
Q 001719 498 LMDLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGEIPDRMAIGCFSLEILALSNNNLQGHIFSKKFNLTNLMRLQLD 577 (1021)
Q Consensus 498 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 577 (1021)
++.++..+|+++ ..|+.+..+.+|..+++.+|+++ +.|+... +++.|++||...|.++ .+|+.++.+.+|..|++.
T Consensus 139 l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~-~l~~~~i-~m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~ 214 (565)
T KOG0472|consen 139 LEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLK-ALPENHI-AMKRLKHLDCNSNLLE-TLPPELGGLESLELLYLR 214 (565)
T ss_pred hhhhhccccccc-cCchHHHHHHHHHHhhccccchh-hCCHHHH-HHHHHHhcccchhhhh-cCChhhcchhhhHHHHhh
Confidence 888888888887 67778888888888888888888 5665554 3788888888888776 577888888888888888
Q ss_pred CCcccccCCccccccCccCeEEccCCcCCCcchhhhc-CCCCCcEEECCCCcccCCccccccCCCCCCEEEccCCccccC
Q 001719 578 GNKFIGEIPKSLSKCYLLGGLYLSDNHLSGKIPRWLG-NLSALEDIIMPNNNLEGPIPIEFCQLDYLKILDLSNNTIFGT 656 (1021)
Q Consensus 578 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ 656 (1021)
.|++. .+| .|.+|+.|.+++++.|.+. .+|+... +++++..||+++|++. ..|..++.+++|++||+|+|.+++.
T Consensus 215 ~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is~L 290 (565)
T KOG0472|consen 215 RNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDISSL 290 (565)
T ss_pred hcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccccC
Confidence 88887 666 6888888999998888887 5565544 8888889999999887 6888888888899999999988866
Q ss_pred CCCCCCCCcccEEEccCCccccccchhhhcC-----ccccE----EEccCCc---c-CCCCCcc----ccCCCCCcEEEc
Q 001719 657 LPSCFSPAYIEEIHLSKNKIEGRLESIIHYS-----PYLMT----LDLSYNC---L-HGSIPTW----IDRLPQLSYLLL 719 (1021)
Q Consensus 657 ~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~~-----~~L~~----L~Ls~N~---l-~~~~p~~----~~~l~~L~~L~L 719 (1021)
.+...+. .|+.|-+.+|.+..+-.+.+..- +.|+. =-++... - .+..|.+ .....+.+.|++
T Consensus 291 p~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~ 369 (565)
T KOG0472|consen 291 PYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDV 369 (565)
T ss_pred Ccccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcc
Confidence 5554445 88888888888753221111110 01110 0011110 0 0011111 112345667777
Q ss_pred ccccccccCCccccCCCC---CCEEeccCCcCcccCCcccccccccccccccccccCCCCCCCcccccCCCCCCCCCCCC
Q 001719 720 ANNYIEGEIPIQICQLKE---VRLIDLSHNNLSGHIPPCLVNTALNEGYHEAVAPISSSSDDASTYVLPSVAPNGSPIGE 796 (1021)
Q Consensus 720 ~~N~l~~~~p~~~~~l~~---L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 (1021)
++-+++ .+|.+...-.. ...++++.|++. .+|..+..++-... ..++......+.+
T Consensus 370 s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT----------------~l~lsnn~isfv~--- 428 (565)
T KOG0472|consen 370 SDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVT----------------DLVLSNNKISFVP--- 428 (565)
T ss_pred cccccc-cCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHH----------------HHHhhcCccccch---
Confidence 777776 55555443333 566777777775 66665544330000 0000000000000
Q ss_pred cceEEEeecCccccccccccccccEEEcccceecCcCcccccCCCCCCEEEcCCCcCccchhhcccCCCCCCEEeCcCcc
Q 001719 797 EETVQFTTKNMSYYYQGRILMSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNL 876 (1021)
Q Consensus 797 ~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~ 876 (1021)
.....+++++.|+|++|-+. .+|.+++.+..|+.||+|+|+|. .+|..+..+..++.+-.++|+
T Consensus 429 --------------~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nq 492 (565)
T KOG0472|consen 429 --------------LELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQ 492 (565)
T ss_pred --------------HHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhcccc
Confidence 00123557888999999888 89999999999999999999988 788888888888888888888
Q ss_pred CCCCCCcccccCCCCCEEEccCCcceecCCCcccccCCCCcccccCccCC
Q 001719 877 LLGKIPPQLIVLNTLAVFRVANNNLSGKIPDRVAQFSTFEEDSYEGNPFL 926 (1021)
Q Consensus 877 l~g~ip~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~~gN~~l 926 (1021)
+....|+.+.++.+|.+||+.+|.+. .||..++.++++..+.+.|||+-
T Consensus 493 i~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 493 IGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred ccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence 88666666999999999999999988 67777899999999999999864
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=1.2e-36 Score=323.71 Aligned_cols=370 Identities=22% Similarity=0.229 Sum_probs=311.8
Q ss_pred CCEEECcCCcCCCCCccCccCCCCcCEEEcCCCCCCcccchhhhhcCCCCCEEECCCCcCCCCCCccccCCCCCCEEEcC
Q 001719 449 LKTLLLANNSLFGSFRMPIHSHQKLATLDVSTNFFRGHIPVEIGTYLSGLMDLNLSRNAFNGSIPSSFADMKMLKSLDIS 528 (1021)
Q Consensus 449 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls 528 (1021)
-+.|++++|.+..+....|..+++|+++++..|.++ .||..... ..+|+.|+|.+|.|+..-...+..++.|+.||||
T Consensus 80 t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~-sghl~~L~L~~N~I~sv~se~L~~l~alrslDLS 157 (873)
T KOG4194|consen 80 TQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHE-SGHLEKLDLRHNLISSVTSEELSALPALRSLDLS 157 (873)
T ss_pred eeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hccccccc-ccceeEEeeeccccccccHHHHHhHhhhhhhhhh
Confidence 456888888888777777888888888888888887 78876554 6779999999999998888889999999999999
Q ss_pred CCcCCCccchhhhhcCCCCcEEECCCCcccccccccccCCCCccEEEccCCcccccCCccccccCccCeEEccCCcCCCc
Q 001719 529 YNQLTGEIPDRMAIGCFSLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPKSLSKCYLLGGLYLSDNHLSGK 608 (1021)
Q Consensus 529 ~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 608 (1021)
.|.++ ++|...|..-.++++|+|++|.|+..-...|.++.+|..|.|+.|+++...+..|.++++|+.|+|..|++.-.
T Consensus 158 rN~is-~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~iriv 236 (873)
T KOG4194|consen 158 RNLIS-EIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIV 236 (873)
T ss_pred hchhh-cccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeee
Confidence 99998 88887776667899999999999988888899999999999999999977778888899999999999998754
Q ss_pred chhhhcCCCCCcEEECCCCcccCCccccccCCCCCCEEEccCCccccCCCCCC-CCCcccEEEccCCccccccchhhhcC
Q 001719 609 IPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLDYLKILDLSNNTIFGTLPSCF-SPAYIEEIHLSKNKIEGRLESIIHYS 687 (1021)
Q Consensus 609 ~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~-~~~~L~~L~L~~n~l~~~~~~~~~~~ 687 (1021)
---.|.++++|+.|.+..|.+...-.+.|..+.++++|+|+.|++...-..+. ++++|+.|++++|.|..+-++.+..+
T Consensus 237 e~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsft 316 (873)
T KOG4194|consen 237 EGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFT 316 (873)
T ss_pred hhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhc
Confidence 45678999999999999999998888889999999999999999986655544 88999999999999999989999999
Q ss_pred ccccEEEccCCccCCCCCccccCCCCCcEEEcccccccccCCccccCCCCCCEEeccCCcCcccCCcccccccccccccc
Q 001719 688 PYLMTLDLSYNCLHGSIPTWIDRLPQLSYLLLANNYIEGEIPIQICQLKEVRLIDLSHNNLSGHIPPCLVNTALNEGYHE 767 (1021)
Q Consensus 688 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~ 767 (1021)
++|++|||++|+|+...+..|..+..|++|.|++|+++..-...|..+++|+.|||++|.+++.|-+.-.
T Consensus 317 qkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~---------- 386 (873)
T KOG4194|consen 317 QKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAV---------- 386 (873)
T ss_pred ccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchh----------
Confidence 9999999999999988888999999999999999999877778888999999999999999865533110
Q ss_pred cccccCCCCCCCcccccCCCCCCCCCCCCcceEEEeecCccccccccccccccEEEcccceecCcCcccccCCCCCCEEE
Q 001719 768 AVAPISSSSDDASTYVLPSVAPNGSPIGEEETVQFTTKNMSYYYQGRILMSMSGIDLSCNKLTGEIPTQIGYLTRIRALN 847 (1021)
Q Consensus 768 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~L~ 847 (1021)
.| ..+++|+.|+|.+|++...--.+|..+.+|+.||
T Consensus 387 ------------------------------------------~f--~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~Ld 422 (873)
T KOG4194|consen 387 ------------------------------------------AF--NGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLD 422 (873)
T ss_pred ------------------------------------------hh--ccchhhhheeecCceeeecchhhhccCcccceec
Confidence 01 2256788888888888844345788888888888
Q ss_pred cCCCcCccchhhcccCCCCCCEEeCcCcc
Q 001719 848 LSHNNLTGTIPTTFSNLKQIESLDLSYNL 876 (1021)
Q Consensus 848 Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~ 876 (1021)
|.+|.|..+-|++|..+ .|+.|.++.-.
T Consensus 423 L~~NaiaSIq~nAFe~m-~Lk~Lv~nSss 450 (873)
T KOG4194|consen 423 LGDNAIASIQPNAFEPM-ELKELVMNSSS 450 (873)
T ss_pred CCCCcceeecccccccc-hhhhhhhcccc
Confidence 88888888888888888 88887776543
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=6.6e-39 Score=326.93 Aligned_cols=495 Identities=24% Similarity=0.349 Sum_probs=387.4
Q ss_pred CCCCEEEccCcccccccCchhhhcCCCCceEEecccccccccchhhhccCCcccEEEccCccccccccCCCCCCcchhhc
Q 001719 340 PSLKTLYLLFTNFKGTIVNQELHNFTNLEELLLVKSDLHVSQLLQSIASFTSLKYLSIRGCVLKGALHGQDGGTFPKFLY 419 (1021)
Q Consensus 340 ~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~p~~l~ 419 (1021)
..|+.+.++.|.+... ...+.++..+..+++.+|.+....+ +++.+..++.++.+.+.+ ..+|+.++
T Consensus 45 v~l~~lils~N~l~~l--~~dl~nL~~l~vl~~~~n~l~~lp~--aig~l~~l~~l~vs~n~l---------s~lp~~i~ 111 (565)
T KOG0472|consen 45 VDLQKLILSHNDLEVL--REDLKNLACLTVLNVHDNKLSQLPA--AIGELEALKSLNVSHNKL---------SELPEQIG 111 (565)
T ss_pred cchhhhhhccCchhhc--cHhhhcccceeEEEeccchhhhCCH--HHHHHHHHHHhhcccchH---------hhccHHHh
Confidence 4678889998887643 4678899999999999999875443 688888999999998876 47888889
Q ss_pred CCCCcCEEEecCCccccCCChhHhhcCCCCCEEECcCCcCCCCCccCccCCCCcCEEEcCCCCCCcccchhhhhcCCCCC
Q 001719 420 HQHDLKNVDLSHLNLSGKFPNWLVENNTNLKTLLLANNSLFGSFRMPIHSHQKLATLDVSTNFFRGHIPVEIGTYLSGLM 499 (1021)
Q Consensus 420 ~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~ 499 (1021)
...++..+++++|.+. ++|+.+ +.+-.|+.++..+|++.. .|..+..+.++..+++.+|+++ ..|+.... ++.|+
T Consensus 112 s~~~l~~l~~s~n~~~-el~~~i-~~~~~l~dl~~~~N~i~s-lp~~~~~~~~l~~l~~~~n~l~-~l~~~~i~-m~~L~ 186 (565)
T KOG0472|consen 112 SLISLVKLDCSSNELK-ELPDSI-GRLLDLEDLDATNNQISS-LPEDMVNLSKLSKLDLEGNKLK-ALPENHIA-MKRLK 186 (565)
T ss_pred hhhhhhhhhcccccee-ecCchH-HHHhhhhhhhcccccccc-CchHHHHHHHHHHhhccccchh-hCCHHHHH-HHHHH
Confidence 9999999999999988 566663 578889999999998864 5667778889999999999998 66666655 78999
Q ss_pred EEECCCCcCCCCCCccccCCCCCCEEEcCCCcCCCccchhhhhcCCCCcEEECCCCcccccccccccCCCCccEEEccCC
Q 001719 500 DLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGEIPDRMAIGCFSLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGN 579 (1021)
Q Consensus 500 ~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 579 (1021)
++|...|.+. .+|+.++.+.+|..|++..|++. .+|+ |.+|..|++++++.|++.-...+...+++++..||+.+|
T Consensus 187 ~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lPe--f~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdN 262 (565)
T KOG0472|consen 187 HLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR-FLPE--FPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDN 262 (565)
T ss_pred hcccchhhhh-cCChhhcchhhhHHHHhhhcccc-cCCC--CCccHHHHHHHhcccHHHhhHHHHhcccccceeeecccc
Confidence 9999999887 78888999999999999999998 8883 348889999999999988554455568899999999999
Q ss_pred cccccCCccccccCccCeEEccCCcCCCcchhhhcCCCCCcEEECCCCcccCCccccccCCC---CCCEE-------Ecc
Q 001719 580 KFIGEIPKSLSKCYLLGGLYLSDNHLSGKIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLD---YLKIL-------DLS 649 (1021)
Q Consensus 580 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~---~L~~L-------~Ls 649 (1021)
+++ +.|+.+..+.+|++||+++|.++ ..|..++++ .|+.|.+.+|.+.. +...+-+.. -|++| -++
T Consensus 263 klk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrT-iRr~ii~~gT~~vLKyLrs~~~~dglS 338 (565)
T KOG0472|consen 263 KLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRT-IRREIISKGTQEVLKYLRSKIKDDGLS 338 (565)
T ss_pred ccc-cCchHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHH-HHHHHHcccHHHHHHHHHHhhccCCCC
Confidence 988 88888888999999999999998 577788998 89999999998752 222211111 01111 011
Q ss_pred CCc---------cccCCCCCCCCCcccEEEccCCccccccchhhhcCc--cccEEEccCCccCCCCCccccCCCCCcE-E
Q 001719 650 NNT---------IFGTLPSCFSPAYIEEIHLSKNKIEGRLESIIHYSP--YLMTLDLSYNCLHGSIPTWIDRLPQLSY-L 717 (1021)
Q Consensus 650 ~n~---------l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~--~L~~L~Ls~N~l~~~~p~~~~~l~~L~~-L 717 (1021)
.-. ..+..|+.....+.+.|++++-+++..+.+.|..-. -.+.++++.|++. .+|..+..+..+.+ +
T Consensus 339 ~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l 417 (565)
T KOG0472|consen 339 QSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDL 417 (565)
T ss_pred CCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHH
Confidence 110 111222222345788899999999877666665433 3788999999998 78888777776655 4
Q ss_pred EcccccccccCCccccCCCCCCEEeccCCcCcccCCcccccccccccccccccccCCCCCCCcccccCCCCCCCCCCCCc
Q 001719 718 LLANNYIEGEIPIQICQLKEVRLIDLSHNNLSGHIPPCLVNTALNEGYHEAVAPISSSSDDASTYVLPSVAPNGSPIGEE 797 (1021)
Q Consensus 718 ~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 797 (1021)
.+++|.+ +-+|..++.+++|..|+|++|.+. .+|..++.+.
T Consensus 418 ~lsnn~i-sfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv------------------------------------- 458 (565)
T KOG0472|consen 418 VLSNNKI-SFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLV------------------------------------- 458 (565)
T ss_pred HhhcCcc-ccchHHHHhhhcceeeecccchhh-hcchhhhhhh-------------------------------------
Confidence 4555555 488999999999999999999886 7887666543
Q ss_pred ceEEEeecCccccccccccccccEEEcccceecCcCcccccCCCCCCEEEcCCCcCccchhhcccCCCCCCEEeCcCccC
Q 001719 798 ETVQFTTKNMSYYYQGRILMSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLL 877 (1021)
Q Consensus 798 ~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l 877 (1021)
.|+.||+|.|+|. .+|..+..+..++.+-.++|++....|+.+.+|.+|..|||.+|.|
T Consensus 459 --------------------~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdl 517 (565)
T KOG0472|consen 459 --------------------RLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDL 517 (565)
T ss_pred --------------------hhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCch
Confidence 6889999999999 8999998888899888888999988888899999999999999999
Q ss_pred CCCCCcccccCCCCCEEEccCCcceecCCCc-ccccCCCCcccccCcc
Q 001719 878 LGKIPPQLIVLNTLAVFRVANNNLSGKIPDR-VAQFSTFEEDSYEGNP 924 (1021)
Q Consensus 878 ~g~ip~~l~~l~~L~~L~ls~N~l~g~ip~~-~~~~~~~~~~~~~gN~ 924 (1021)
. .||+.++++++|+.|++++|++. .|.. +-.-.|..-++|.+++
T Consensus 518 q-~IPp~LgnmtnL~hLeL~gNpfr--~Pr~~iLmkgT~aiL~ylrdr 562 (565)
T KOG0472|consen 518 Q-QIPPILGNMTNLRHLELDGNPFR--QPRHQILMKGTAAILSYLRDR 562 (565)
T ss_pred h-hCChhhccccceeEEEecCCccC--CCHHHHhccChHHHHHHhccc
Confidence 8 89999999999999999999998 3432 1222344445555554
No 7
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.97 E-value=5.1e-34 Score=320.56 Aligned_cols=487 Identities=28% Similarity=0.345 Sum_probs=290.6
Q ss_pred CCCCEEeCCCCCCCCcccccCCCCCCCCEEEcCCcccccccChhccCCCCCCCEEeCCCCCCCCCCCcccccccCCCCCC
Q 001719 135 NNLKFLLLDSNYFNNSIFSSLGGLSSLRILSLADNRLNGSIDIKGLDSLSNLEELDMSYNAIDNLVVPQGLERLSTLSNL 214 (1021)
Q Consensus 135 ~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L 214 (1021)
.+++.|+++.|.+.....+.+.+..+|+.||+++|.++ ..|. .+..+.+|+.|+++.|.|...+. .+.++.+|
T Consensus 21 ~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp~-~it~l~~L~~ln~s~n~i~~vp~-----s~~~~~~l 93 (1081)
T KOG0618|consen 21 EALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFPI-QITLLSHLRQLNLSRNYIRSVPS-----SCSNMRNL 93 (1081)
T ss_pred HHHHhhhccccccccCchHHhhheeeeEEeeccccccc-cCCc-hhhhHHHHhhcccchhhHhhCch-----hhhhhhcc
Confidence 33666666666554333344555555777777777665 6665 66777777777777776665542 56667777
Q ss_pred CEEECCCCCCCCccchhccCCCCCCEEEcCCccCcccccccCccccccccCCcccceeecCCCcCCCCCCCCCCCCCCee
Q 001719 215 KFLRLDYNSFNSSIFSSLGGLSSLRILSLADNRFNGSIDIKGKQASSILRVPSFVDLVSLSSWSVGINTGLDSLSNLEEL 294 (1021)
Q Consensus 215 ~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~l~~l~~L~~L 294 (1021)
+++.|.+|.+. ..|..+..+++|++|+++.|.+. .+|. .+..+..++.+
T Consensus 94 ~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl-----------------------------~i~~lt~~~~~ 142 (1081)
T KOG0618|consen 94 QYLNLKNNRLQ-SLPASISELKNLQYLDLSFNHFG-PIPL-----------------------------VIEVLTAEEEL 142 (1081)
T ss_pred hhheeccchhh-cCchhHHhhhcccccccchhccC-CCch-----------------------------hHHhhhHHHHH
Confidence 77777766654 34666777777777777777653 3333 13333333444
Q ss_pred eCCCCCCCCCcCChhhhhhccccccccCCcccccCcccccccCCCCCCCEEEccCcccccccCchhhhcCCCCceEEecc
Q 001719 295 DMTNNAINNLVVPKDYRCLRKLNTLYLGGIAMIDGSKVLQSIGSLPSLKTLYLLFTNFKGTIVNQELHNFTNLEELLLVK 374 (1021)
Q Consensus 295 ~Ls~n~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~L~~ 374 (1021)
..++|.-.. .++... .+.+++..+.... .+..++..+.. .|++.+|.+. ...+.++.+|+.+....
T Consensus 143 ~~s~N~~~~-~lg~~~-----ik~~~l~~n~l~~--~~~~~i~~l~~--~ldLr~N~~~----~~dls~~~~l~~l~c~r 208 (1081)
T KOG0618|consen 143 AASNNEKIQ-RLGQTS-----IKKLDLRLNVLGG--SFLIDIYNLTH--QLDLRYNEME----VLDLSNLANLEVLHCER 208 (1081)
T ss_pred hhhcchhhh-hhcccc-----chhhhhhhhhccc--chhcchhhhhe--eeecccchhh----hhhhhhccchhhhhhhh
Confidence 444441000 111111 2222222211110 11134444444 5888888776 24567778888888877
Q ss_pred cccccccchhhhccCCcccEEEccCccccccccCCCCCCcchhhcCCCCcCEEEecCCccccCCChhHhhcCCCCCEEEC
Q 001719 375 SDLHVSQLLQSIASFTSLKYLSIRGCVLKGALHGQDGGTFPKFLYHQHDLKNVDLSHLNLSGKFPNWLVENNTNLKTLLL 454 (1021)
Q Consensus 375 n~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L 454 (1021)
|.+.... ..-++|+.|+.+.|.+..... . ..-.+|+++++++|+++ .+|.| .+.+.+|+.+..
T Consensus 209 n~ls~l~-----~~g~~l~~L~a~~n~l~~~~~--------~--p~p~nl~~~dis~n~l~-~lp~w-i~~~~nle~l~~ 271 (1081)
T KOG0618|consen 209 NQLSELE-----ISGPSLTALYADHNPLTTLDV--------H--PVPLNLQYLDISHNNLS-NLPEW-IGACANLEALNA 271 (1081)
T ss_pred cccceEE-----ecCcchheeeeccCcceeecc--------c--cccccceeeecchhhhh-cchHH-HHhcccceEecc
Confidence 7765322 234677778777776651111 0 11246777888888777 56665 467777777777
Q ss_pred cCCcCCCCCccCccCCCCcCEEEcCCCCCCcccchhhhhcCCCCCEEECCCCcCCCCCCc-cccCCCC-CCEEEcCCCcC
Q 001719 455 ANNSLFGSFRMPIHSHQKLATLDVSTNFFRGHIPVEIGTYLSGLMDLNLSRNAFNGSIPS-SFADMKM-LKSLDISYNQL 532 (1021)
Q Consensus 455 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~-~~~~l~~-L~~L~Ls~n~l 532 (1021)
.+|.+ ...|..+...++|+.|++..|.+. .+|..... ++.|++|+|..|++. ..|+ .+.-... |..|+.+.|++
T Consensus 272 n~N~l-~~lp~ri~~~~~L~~l~~~~nel~-yip~~le~-~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l 347 (1081)
T KOG0618|consen 272 NHNRL-VALPLRISRITSLVSLSAAYNELE-YIPPFLEG-LKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKL 347 (1081)
T ss_pred cchhH-HhhHHHHhhhhhHHHHHhhhhhhh-hCCCcccc-cceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccc
Confidence 77777 344555566667777777777666 56655543 566777777777766 3333 2222322 55666666666
Q ss_pred CCccchhhhhcCCCCcEEECCCCcccccccccccCCCCccEEEccCCcccccCCccccccCccCeEEccCCcCCCcchhh
Q 001719 533 TGEIPDRMAIGCFSLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPKSLSKCYLLGGLYLSDNHLSGKIPRW 612 (1021)
Q Consensus 533 ~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~ 612 (1021)
. ..|..-....+.|+.|.+.+|.++....+.+.+...|+.|+|++|++.......+.++..|+.|+|++|+++ .+|..
T Consensus 348 ~-~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~t 425 (1081)
T KOG0618|consen 348 S-TLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDT 425 (1081)
T ss_pred c-ccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHH
Confidence 5 444333334556777777777777666666777777777777777776444445666777777777777777 56677
Q ss_pred hcCCCCCcEEECCCCcccCCccccccCCCCCCEEEccCCccccC-CCCCCCCCcccEEEccCCccccccchhhhcCcccc
Q 001719 613 LGNLSALEDIIMPNNNLEGPIPIEFCQLDYLKILDLSNNTIFGT-LPSCFSPAYIEEIHLSKNKIEGRLESIIHYSPYLM 691 (1021)
Q Consensus 613 l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~-~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~ 691 (1021)
+.++..|++|...+|++. ..| .+..+++|+.+|+|.|+++.. +|.....++|++||+++|.-.......|..+..+.
T Consensus 426 va~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l~~d~~~l~~l~~l~ 503 (1081)
T KOG0618|consen 426 VANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRLVFDHKTLKVLKSLS 503 (1081)
T ss_pred HHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCcccccchhhhHHhhhhh
Confidence 777777777777777776 455 677777777777777777643 23322226777777777764333344555555555
Q ss_pred EEEccCC
Q 001719 692 TLDLSYN 698 (1021)
Q Consensus 692 ~L~Ls~N 698 (1021)
..++.-|
T Consensus 504 ~~~i~~~ 510 (1081)
T KOG0618|consen 504 QMDITLN 510 (1081)
T ss_pred heecccC
Confidence 5555554
No 8
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.97 E-value=2e-33 Score=315.89 Aligned_cols=423 Identities=22% Similarity=0.286 Sum_probs=248.3
Q ss_pred eeCCCCCCCCCcCChhhhhhccccccccCCcccccCcccccccCCCCCCCEEEccCcccccccCchhhhcCCCCceEEec
Q 001719 294 LDMTNNAINNLVVPKDYRCLRKLNTLYLGGIAMIDGSKVLQSIGSLPSLKTLYLLFTNFKGTIVNQELHNFTNLEELLLV 373 (1021)
Q Consensus 294 L~Ls~n~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~L~ 373 (1021)
+|++.+++. .+|..+..-..++.|.+..|...... +..+...-+|+.|++++|.+. .+ |..+..+..|+.|.++
T Consensus 3 vd~s~~~l~--~ip~~i~~~~~~~~ln~~~N~~l~~p--l~~~~~~v~L~~l~lsnn~~~-~f-p~~it~l~~L~~ln~s 76 (1081)
T KOG0618|consen 3 VDASDEQLE--LIPEQILNNEALQILNLRRNSLLSRP--LEFVEKRVKLKSLDLSNNQIS-SF-PIQITLLSHLRQLNLS 76 (1081)
T ss_pred cccccccCc--ccchhhccHHHHHhhhccccccccCc--hHHhhheeeeEEeeccccccc-cC-CchhhhHHHHhhcccc
Confidence 445555554 34555444444666666666554432 244445556999999888765 34 7778888889999999
Q ss_pred ccccccccchhhhccCCcccEEEccCccccccccCCCCCCcchhhcCCCCcCEEEecCCccccCCChhHhhcCCCCCEEE
Q 001719 374 KSDLHVSQLLQSIASFTSLKYLSIRGCVLKGALHGQDGGTFPKFLYHQHDLKNVDLSHLNLSGKFPNWLVENNTNLKTLL 453 (1021)
Q Consensus 374 ~n~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~ 453 (1021)
.|.+.... .+...+.+|+++.+.++.+ ..+|..+..+++|+.||++.|.+. .+|..+ ..++.++.+.
T Consensus 77 ~n~i~~vp--~s~~~~~~l~~lnL~~n~l---------~~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i-~~lt~~~~~~ 143 (1081)
T KOG0618|consen 77 RNYIRSVP--SSCSNMRNLQYLNLKNNRL---------QSLPASISELKNLQYLDLSFNHFG-PIPLVI-EVLTAEEELA 143 (1081)
T ss_pred hhhHhhCc--hhhhhhhcchhheeccchh---------hcCchhHHhhhcccccccchhccC-CCchhH-HhhhHHHHHh
Confidence 88877543 4677788888888888866 367878888888888888888887 677654 5677777777
Q ss_pred CcCCcCCCCCccCccCCCCcCEEEcCCCCCCcccchhhhhcCCCCCEEECCCCcCCCCCCccccCCCCCCEEEcCCCcCC
Q 001719 454 LANNSLFGSFRMPIHSHQKLATLDVSTNFFRGHIPVEIGTYLSGLMDLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLT 533 (1021)
Q Consensus 454 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~ 533 (1021)
.++|......+. . .++.+++..|.+.+.++..+.. +.. .|+|.+|.+. -..+..+++|+.+....|++.
T Consensus 144 ~s~N~~~~~lg~----~-~ik~~~l~~n~l~~~~~~~i~~-l~~--~ldLr~N~~~---~~dls~~~~l~~l~c~rn~ls 212 (1081)
T KOG0618|consen 144 ASNNEKIQRLGQ----T-SIKKLDLRLNVLGGSFLIDIYN-LTH--QLDLRYNEME---VLDLSNLANLEVLHCERNQLS 212 (1081)
T ss_pred hhcchhhhhhcc----c-cchhhhhhhhhcccchhcchhh-hhe--eeecccchhh---hhhhhhccchhhhhhhhcccc
Confidence 777722211111 1 1566667777666666665543 333 4777777665 234566666777777777665
Q ss_pred CccchhhhhcCCCCcEEECCCCcccccccccccCCCCccEEEccCCcccccCCccccccCccCeEEccCCcCCCcchhhh
Q 001719 534 GEIPDRMAIGCFSLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPKSLSKCYLLGGLYLSDNHLSGKIPRWL 613 (1021)
Q Consensus 534 ~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l 613 (1021)
.+.. .-++|+.|+.++|.++...+. ....+|++++++.|+++ .+|.++..|.+|+.++..+|+++ .+|..+
T Consensus 213 -~l~~----~g~~l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri 283 (1081)
T KOG0618|consen 213 -ELEI----SGPSLTALYADHNPLTTLDVH--PVPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRI 283 (1081)
T ss_pred -eEEe----cCcchheeeeccCcceeeccc--cccccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHH
Confidence 3222 235666666666666622221 12345666666666665 44566666666666666666664 555555
Q ss_pred cCCCCCcEEECCCCcccCCccccccCCCCCCEEEccCCccccCCCCCC--CCCcccEEEccCCccccccchhhhcCcccc
Q 001719 614 GNLSALEDIIMPNNNLEGPIPIEFCQLDYLKILDLSNNTIFGTLPSCF--SPAYIEEIHLSKNKIEGRLESIIHYSPYLM 691 (1021)
Q Consensus 614 ~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~--~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~ 691 (1021)
...++|+.|.+..|.+. -+|.....+++|++|+|..|++....+..+ ...+|..|+.+.|++.......=...+.|+
T Consensus 284 ~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq 362 (1081)
T KOG0618|consen 284 SRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQ 362 (1081)
T ss_pred hhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHH
Confidence 66666666666666665 445555556666666666666543222222 122345555555555433222222334455
Q ss_pred EEEccCCccCCCCCccccCCCCCcEEEcccccccccCCccccCCCCCCEEeccCCcCcccCCcccc
Q 001719 692 TLDLSYNCLHGSIPTWIDRLPQLSYLLLANNYIEGEIPIQICQLKEVRLIDLSHNNLSGHIPPCLV 757 (1021)
Q Consensus 692 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~ 757 (1021)
.|.+.+|.++...-..+.+...|++|+|++|++.......+.++..|+.|+||+|+++ .+|.++.
T Consensus 363 ~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva 427 (1081)
T KOG0618|consen 363 ELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVA 427 (1081)
T ss_pred HHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHH
Confidence 5555555555544444555555555555555555333344455555555555555554 4444433
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=4.9e-33 Score=297.62 Aligned_cols=364 Identities=25% Similarity=0.343 Sum_probs=180.9
Q ss_pred cCEEEcCCCCCC-cccchhhhhcCCCCCEEECCCCcCCCCCCccccCCCCCCEEEcCCCcCCCccchhhhhcCCCCcEEE
Q 001719 473 LATLDVSTNFFR-GHIPVEIGTYLSGLMDLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGEIPDRMAIGCFSLEILA 551 (1021)
Q Consensus 473 L~~L~Ls~n~l~-~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~ 551 (1021)
.+-+|+++|.++ +..|..+-. ++.++.|.|...++. .+|..++.+.+|++|.+++|++. .+-..+ ..++.|+.+.
T Consensus 9 VrGvDfsgNDFsg~~FP~~v~q-Mt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGEL-s~Lp~LRsv~ 84 (1255)
T KOG0444|consen 9 VRGVDFSGNDFSGDRFPHDVEQ-MTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGEL-SDLPRLRSVI 84 (1255)
T ss_pred eecccccCCcCCCCcCchhHHH-hhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhh-ccchhhHHHh
Confidence 344555555555 244444443 455555555555554 45555555555555555555554 222222 1444555555
Q ss_pred CCCCccc-ccccccccCCCCccEEEccCCcccccCCccccccCccCeEEccCCcCCCcchhhhcCCCCCcEEECCCCccc
Q 001719 552 LSNNNLQ-GHIFSKKFNLTNLMRLQLDGNKFIGEIPKSLSKCYLLGGLYLSDNHLSGKIPRWLGNLSALEDIIMPNNNLE 630 (1021)
Q Consensus 552 L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~ 630 (1021)
+.+|++. .-+|..+..+..|+.|||++|++. +.|..+...+++-+|+|++|++..+....+.+++.|-.|+|++|++.
T Consensus 85 ~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe 163 (1255)
T KOG0444|consen 85 VRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE 163 (1255)
T ss_pred hhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh
Confidence 5555543 223444444555555555555554 44444444445555555555554332233444444555555555544
Q ss_pred CCccccccCCCCCCEEEccCCccccCCCCCCCCCcccEEEccCCccccccchhhhcCccccEEEccCCccC-CCCCcccc
Q 001719 631 GPIPIEFCQLDYLKILDLSNNTIFGTLPSCFSPAYIEEIHLSKNKIEGRLESIIHYSPYLMTLDLSYNCLH-GSIPTWID 709 (1021)
Q Consensus 631 ~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~N~l~-~~~p~~~~ 709 (1021)
.+|..+..+..|++|+|++|+ +....-..+..+++|++|.+++.+-+ ..+|..+.
T Consensus 164 -~LPPQ~RRL~~LqtL~Ls~NP-----------------------L~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld 219 (1255)
T KOG0444|consen 164 -MLPPQIRRLSMLQTLKLSNNP-----------------------LNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLD 219 (1255)
T ss_pred -hcCHHHHHHhhhhhhhcCCCh-----------------------hhHHHHhcCccchhhhhhhcccccchhhcCCCchh
Confidence 344444444455555555544 43332223333444555555543321 24455555
Q ss_pred CCCCCcEEEcccccccccCCccccCCCCCCEEeccCCcCcccCCcccccccccccccccccccCCCCCCCcccccCCCCC
Q 001719 710 RLPQLSYLLLANNYIEGEIPIQICQLKEVRLIDLSHNNLSGHIPPCLVNTALNEGYHEAVAPISSSSDDASTYVLPSVAP 789 (1021)
Q Consensus 710 ~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 (1021)
.+.+|..+|+|.|.+. ..|+.+.++.+|+.|+||+|+|+ .+..+.+
T Consensus 220 ~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~-------------------------------- 265 (1255)
T KOG0444|consen 220 DLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEG-------------------------------- 265 (1255)
T ss_pred hhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee-eeeccHH--------------------------------
Confidence 5555555555555555 45555555555555555555554 1111100
Q ss_pred CCCCCCCcceEEEeecCccccccccccccccEEEcccceecCcCcccccCCCCCCEEEcCCCcCc-cchhhcccCCCCCC
Q 001719 790 NGSPIGEEETVQFTTKNMSYYYQGRILMSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLT-GTIPTTFSNLKQIE 868 (1021)
Q Consensus 790 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~-~~~p~~l~~l~~L~ 868 (1021)
...++++|++|+|+++ .+|.++..|+.|+.|.+.+|+++ .-||+.+|+|.+|+
T Consensus 266 -------------------------~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Le 319 (1255)
T KOG0444|consen 266 -------------------------EWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLE 319 (1255)
T ss_pred -------------------------HHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhH
Confidence 1124455555555555 55555555555555555555544 12555555555555
Q ss_pred EEeCcCccCCCCCCcccccCCCCCEEEccCCcceecCCCcccccCCCCcccccCccCCC
Q 001719 869 SLDLSYNLLLGKIPPQLIVLNTLAVFRVANNNLSGKIPDRVAQFSTFEEDSYEGNPFLC 927 (1021)
Q Consensus 869 ~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~~gN~~lC 927 (1021)
.+..++|+|. ..|.++..+..|+.|+|+.|+|. ..|+++..++.++.+++..||.+-
T Consensus 320 vf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLV 376 (1255)
T KOG0444|consen 320 VFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLV 376 (1255)
T ss_pred HHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCcc
Confidence 5555555554 55555555555555555555555 345554455555555555555554
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.96 E-value=6.5e-32 Score=289.04 Aligned_cols=394 Identities=26% Similarity=0.336 Sum_probs=231.7
Q ss_pred CCcCEEEecCCcccc-CCChhHhhcCCCCCEEECcCCcCCCCCccCccCCCCcCEEEcCCCCCCcccchhhhhcCCCCCE
Q 001719 422 HDLKNVDLSHLNLSG-KFPNWLVENNTNLKTLLLANNSLFGSFRMPIHSHQKLATLDVSTNFFRGHIPVEIGTYLSGLMD 500 (1021)
Q Consensus 422 ~~L~~L~Ls~n~l~~-~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~ 500 (1021)
+-.+-+|+++|.++| .+|..+ ..+++++.|.|...++. .+|..++.+.+|+.|.+++|++. .+-.++.. ++.|+.
T Consensus 7 pFVrGvDfsgNDFsg~~FP~~v-~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~-Lp~LRs 82 (1255)
T KOG0444|consen 7 PFVRGVDFSGNDFSGDRFPHDV-EQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSD-LPRLRS 82 (1255)
T ss_pred ceeecccccCCcCCCCcCchhH-HHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhcc-chhhHH
Confidence 345667777777773 566553 56666666666655543 23445555555555555555544 23223322 455555
Q ss_pred EECCCCcCCC-CCCccccCCCCCCEEEcCCCcCCCccchhhhhcCCCCcEEECCCCcccccccccccCCCCccEEEccCC
Q 001719 501 LNLSRNAFNG-SIPSSFADMKMLKSLDISYNQLTGEIPDRMAIGCFSLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGN 579 (1021)
Q Consensus 501 L~L~~n~l~~-~~p~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 579 (1021)
+.+..|++.. -+|..+..+..|+.||||+|+++ ++|..+- ...++-.|+||+|+|..+..+-|.+++.|-.|||++|
T Consensus 83 v~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE-~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~N 160 (1255)
T KOG0444|consen 83 VIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLE-YAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNN 160 (1255)
T ss_pred HhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhh-hhcCcEEEEcccCccccCCchHHHhhHhHhhhccccc
Confidence 5555555442 24445555555555555555555 5555443 3445555555555555433333444555555555555
Q ss_pred cccccCCccccccCccCeEEccCCcCCCcchhhhcCCCCCcEEECCCCccc-CCccccccCCCCCCEEEccCCccccCCC
Q 001719 580 KFIGEIPKSLSKCYLLGGLYLSDNHLSGKIPRWLGNLSALEDIIMPNNNLE-GPIPIEFCQLDYLKILDLSNNTIFGTLP 658 (1021)
Q Consensus 580 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~-~~~p~~l~~l~~L~~L~Ls~n~l~~~~p 658 (1021)
++. .+|..+..+..|++|+|++|.+....-..+..+++|+.|.+++.+-+ ..+|.++..
T Consensus 161 rLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~------------------- 220 (1255)
T KOG0444|consen 161 RLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDD------------------- 220 (1255)
T ss_pred hhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhh-------------------
Confidence 544 34444444555555555555444332333333444444444443321 123333444
Q ss_pred CCCCCCcccEEEccCCccccccchhhhcCccccEEEccCCccCCCCCccccCCCCCcEEEcccccccccCCccccCCCCC
Q 001719 659 SCFSPAYIEEIHLSKNKIEGRLESIIHYSPYLMTLDLSYNCLHGSIPTWIDRLPQLSYLLLANNYIEGEIPIQICQLKEV 738 (1021)
Q Consensus 659 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L 738 (1021)
+.+|..++++.|++. ..|+.+.++++|+.|+||+|+|+ .+....+...+|+.|++|.|+++ .+|.+++++++|
T Consensus 221 ----l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL 293 (1255)
T KOG0444|consen 221 ----LHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKL 293 (1255)
T ss_pred ----hhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhhhHHH
Confidence 445555555555554 55666677777777777777776 34444555567888888888887 778888888888
Q ss_pred CEEeccCCcCcc-cCCcccccccccccccccccccCCCCCCCcccccCCCCCCCCCCCCcceEEEeecCccccccccccc
Q 001719 739 RLIDLSHNNLSG-HIPPCLVNTALNEGYHEAVAPISSSSDDASTYVLPSVAPNGSPIGEEETVQFTTKNMSYYYQGRILM 817 (1021)
Q Consensus 739 ~~L~Ls~N~l~g-~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 817 (1021)
+.|.+.+|+++- .||+.++++.
T Consensus 294 ~kLy~n~NkL~FeGiPSGIGKL~--------------------------------------------------------- 316 (1255)
T KOG0444|consen 294 TKLYANNNKLTFEGIPSGIGKLI--------------------------------------------------------- 316 (1255)
T ss_pred HHHHhccCcccccCCccchhhhh---------------------------------------------------------
Confidence 888888887762 4666665543
Q ss_pred cccEEEcccceecCcCcccccCCCCCCEEEcCCCcCccchhhcccCCCCCCEEeCcCccCCCCCCcccccCCCCCEEEcc
Q 001719 818 SMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLLGKIPPQLIVLNTLAVFRVA 897 (1021)
Q Consensus 818 ~L~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls 897 (1021)
.|+.+..++|.+. .+|+.+..+..|+.|.|++|++. .+|+++--|+.|+.|||..|.=--..|.--..-+.|+.-|+.
T Consensus 317 ~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLVMPPKP~da~~~lefYNID 394 (1255)
T KOG0444|consen 317 QLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLVMPPKPNDARKKLEFYNID 394 (1255)
T ss_pred hhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCccCCCCcchhhhcceeeecc
Confidence 5667777888887 88888988999999999999888 788888889999999998886443344322223556665554
Q ss_pred C---C--cceecCCC
Q 001719 898 N---N--NLSGKIPD 907 (1021)
Q Consensus 898 ~---N--~l~g~ip~ 907 (1021)
+ + +|-|..|.
T Consensus 395 FSLq~QlrlAG~~pa 409 (1255)
T KOG0444|consen 395 FSLQHQLRLAGQMPA 409 (1255)
T ss_pred eehhhHHhhccCCcc
Confidence 3 2 34555554
No 11
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.91 E-value=2.4e-26 Score=235.41 Aligned_cols=251 Identities=25% Similarity=0.222 Sum_probs=143.6
Q ss_pred CcCEEEcCCCCCCcccchhhhhcCCCCCEEECCCCcCCCCCCccccCCCCCCEEEcCC-CcCCCccchhhhhcCCCCcEE
Q 001719 472 KLATLDVSTNFFRGHIPVEIGTYLSGLMDLNLSRNAFNGSIPSSFADMKMLKSLDISY-NQLTGEIPDRMAIGCFSLEIL 550 (1021)
Q Consensus 472 ~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~-n~l~~~i~~~~~~~l~~L~~L 550 (1021)
.-++++|..|.|+ .||...|..+++|+.|||++|.|+.+-|.+|.++++|..|-+.+ |+|+ .+|...|.++.+|+.|
T Consensus 68 ~tveirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~slqrL 145 (498)
T KOG4237|consen 68 ETVEIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSSLQRL 145 (498)
T ss_pred cceEEEeccCCcc-cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHHHHHH
Confidence 3455666666666 66666666667777777777777766677777776666655554 6666 6777766677777777
Q ss_pred ECCCCcccccccccccCCCCccEEEccCCcccccCCccccccCccCeEEccCCcCCC------------cchhhhcCCCC
Q 001719 551 ALSNNNLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPKSLSKCYLLGGLYLSDNHLSG------------KIPRWLGNLSA 618 (1021)
Q Consensus 551 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~------------~~p~~l~~l~~ 618 (1021)
.+.-|++.....+.|..+++|..|.+.+|.+...-...|..+.+++.+.+..|.+.. ..|..++....
T Consensus 146 llNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc 225 (498)
T KOG4237|consen 146 LLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARC 225 (498)
T ss_pred hcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhccccee
Confidence 777777766666666667777777777776653333366666666666666665321 11111222111
Q ss_pred CcEEEC-------------------------CCCcccCCcc-ccccCCCCCCEEEccCCccccCCCCCC-CCCcccEEEc
Q 001719 619 LEDIIM-------------------------PNNNLEGPIP-IEFCQLDYLKILDLSNNTIFGTLPSCF-SPAYIEEIHL 671 (1021)
Q Consensus 619 L~~L~l-------------------------~~n~l~~~~p-~~l~~l~~L~~L~Ls~n~l~~~~p~~~-~~~~L~~L~L 671 (1021)
..-..+ +.+...++-| ..|..+++|++|++++|+++++-+.+| +...+++|.|
T Consensus 226 ~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L 305 (498)
T KOG4237|consen 226 VSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYL 305 (498)
T ss_pred cchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhc
Confidence 111111 1222222222 235556666666666666665555555 4455555666
Q ss_pred cCCccccccchhhhcCccccEEEccCCccCCCCCccccCCCCCcEEEcccccc
Q 001719 672 SKNKIEGRLESIIHYSPYLMTLDLSYNCLHGSIPTWIDRLPQLSYLLLANNYI 724 (1021)
Q Consensus 672 ~~n~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l 724 (1021)
..|++...-...|.++..|+.|+|.+|+|+...|..|..+.+|..|.|-.|.+
T Consensus 306 ~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 306 TRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPF 358 (498)
T ss_pred CcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcc
Confidence 66655555555555555555555555555555555555555555555555544
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.90 E-value=2.1e-22 Score=256.62 Aligned_cols=307 Identities=23% Similarity=0.248 Sum_probs=170.8
Q ss_pred CCCEEECCCCcCCCCCCccccCCCCCCEEEcCCCcCCCccchhhhhcCCCCcEEECCCCcccccccccccCCCCccEEEc
Q 001719 497 GLMDLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGEIPDRMAIGCFSLEILALSNNNLQGHIFSKKFNLTNLMRLQL 576 (1021)
Q Consensus 497 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 576 (1021)
+|+.|++.++.+. .+|..| ...+|++|++++|++. .++..+ ..+++|+.|+++++...+.+| .+..+++|++|++
T Consensus 590 ~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~~~-~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L 664 (1153)
T PLN03210 590 KLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWDGV-HSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKL 664 (1153)
T ss_pred ccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-cccccc-ccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEe
Confidence 3444444444443 333333 2344455555554444 333333 234445555554443322333 2344455555555
Q ss_pred cCCcccccCCccccccCccCeEEccCCcCCCcchhhhcCCCCCcEEECCCCcccCCccccccCCCCCCEEEccCCccccC
Q 001719 577 DGNKFIGEIPKSLSKCYLLGGLYLSDNHLSGKIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLDYLKILDLSNNTIFGT 656 (1021)
Q Consensus 577 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ 656 (1021)
++|.....+|..+.++++|+.|++++|.....+|..+ ++++|+.|++++|...+.+|.. .++|+.|++++|.+. .
T Consensus 665 ~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~ 739 (1153)
T PLN03210 665 SDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-E 739 (1153)
T ss_pred cCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-c
Confidence 5544444455555555555555555544333444433 4555555555555443333321 234555555555543 3
Q ss_pred CCCCCCCCcccEEEccCCcc-------ccccchhhhcCccccEEEccCCccCCCCCccccCCCCCcEEEcccccccccCC
Q 001719 657 LPSCFSPAYIEEIHLSKNKI-------EGRLESIIHYSPYLMTLDLSYNCLHGSIPTWIDRLPQLSYLLLANNYIEGEIP 729 (1021)
Q Consensus 657 ~p~~~~~~~L~~L~L~~n~l-------~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p 729 (1021)
+|..+.+++|++|++.++.. ....+..+..+++|+.|++++|...+.+|.+++++++|+.|++++|...+.+|
T Consensus 740 lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP 819 (1153)
T PLN03210 740 FPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLP 819 (1153)
T ss_pred ccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeC
Confidence 44444445555555544321 11122223345677777887777766777777777888888887776555666
Q ss_pred ccccCCCCCCEEeccCCcCcccCCcccccccccccccccccccCCCCCCCcccccCCCCCCCCCCCCcceEEEeecCccc
Q 001719 730 IQICQLKEVRLIDLSHNNLSGHIPPCLVNTALNEGYHEAVAPISSSSDDASTYVLPSVAPNGSPIGEEETVQFTTKNMSY 809 (1021)
Q Consensus 730 ~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 (1021)
..+ ++++|+.|++++|.....+|..
T Consensus 820 ~~~-~L~sL~~L~Ls~c~~L~~~p~~------------------------------------------------------ 844 (1153)
T PLN03210 820 TGI-NLESLESLDLSGCSRLRTFPDI------------------------------------------------------ 844 (1153)
T ss_pred CCC-CccccCEEECCCCCcccccccc------------------------------------------------------
Confidence 655 6777788888776544333321
Q ss_pred cccccccccccEEEcccceecCcCcccccCCCCCCEEEcCC-CcCccchhhcccCCCCCCEEeCcCcc
Q 001719 810 YYQGRILMSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSH-NNLTGTIPTTFSNLKQIESLDLSYNL 876 (1021)
Q Consensus 810 ~~~~~~~~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~-N~l~~~~p~~l~~l~~L~~LdLs~N~ 876 (1021)
..+++.|+|++|.++ .+|..+..+++|+.|+|++ |+++ .+|..+..+++|+.|+++++.
T Consensus 845 ------~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~-~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 845 ------STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQ-RVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred ------ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcC-ccCcccccccCCCeeecCCCc
Confidence 125667888888887 6788888888888888887 4455 466677778888888887774
No 13
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.89 E-value=4.3e-22 Score=253.72 Aligned_cols=340 Identities=23% Similarity=0.262 Sum_probs=274.8
Q ss_pred chhhhhcCCCCCEEECCCCc------CCCCCCccccCCC-CCCEEEcCCCcCCCccchhhhhcCCCCcEEECCCCccccc
Q 001719 488 PVEIGTYLSGLMDLNLSRNA------FNGSIPSSFADMK-MLKSLDISYNQLTGEIPDRMAIGCFSLEILALSNNNLQGH 560 (1021)
Q Consensus 488 p~~~~~~l~~L~~L~L~~n~------l~~~~p~~~~~l~-~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~ 560 (1021)
....+..+++|+.|.+..+. +...+|..|..++ +|+.|++.++.+. .+|..+ ...+|+.|++++|.+. .
T Consensus 550 ~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f--~~~~L~~L~L~~s~l~-~ 625 (1153)
T PLN03210 550 HENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF--RPENLVKLQMQGSKLE-K 625 (1153)
T ss_pred cHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC--CccCCcEEECcCcccc-c
Confidence 34445557888888886553 2334677777764 6999999999997 888876 5789999999999987 4
Q ss_pred ccccccCCCCccEEEccCCcccccCCccccccCccCeEEccCCcCCCcchhhhcCCCCCcEEECCCCcccCCccccccCC
Q 001719 561 IFSKKFNLTNLMRLQLDGNKFIGEIPKSLSKCYLLGGLYLSDNHLSGKIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQL 640 (1021)
Q Consensus 561 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l 640 (1021)
++..+..+++|+.|++++|...+.+|. +..+++|+.|++++|.....+|..+.++++|+.|++++|...+.+|..+ ++
T Consensus 626 L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l 703 (1153)
T PLN03210 626 LWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NL 703 (1153)
T ss_pred cccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CC
Confidence 677788899999999999876667774 7889999999999998878899999999999999999987666788766 79
Q ss_pred CCCCEEEccCCccccCCCCCCCCCcccEEEccCCccccccchhhhcCccccEEEccCCccC-------CCCCccccCCCC
Q 001719 641 DYLKILDLSNNTIFGTLPSCFSPAYIEEIHLSKNKIEGRLESIIHYSPYLMTLDLSYNCLH-------GSIPTWIDRLPQ 713 (1021)
Q Consensus 641 ~~L~~L~Ls~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~N~l~-------~~~p~~~~~l~~ 713 (1021)
++|+.|++++|...+.+|.. ..+|+.|++++|.+.. +|..+ .+++|+.|++.++... ...+......++
T Consensus 704 ~sL~~L~Lsgc~~L~~~p~~--~~nL~~L~L~~n~i~~-lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~s 779 (1153)
T PLN03210 704 KSLYRLNLSGCSRLKSFPDI--STNISWLDLDETAIEE-FPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPS 779 (1153)
T ss_pred CCCCEEeCCCCCCccccccc--cCCcCeeecCCCcccc-ccccc-cccccccccccccchhhccccccccchhhhhcccc
Confidence 99999999999877777754 4689999999999874 45443 5788999988874422 122223334578
Q ss_pred CcEEEcccccccccCCccccCCCCCCEEeccCCcCcccCCcccccccccccccccccccCCCCCCCcccccCCCCCCCCC
Q 001719 714 LSYLLLANNYIEGEIPIQICQLKEVRLIDLSHNNLSGHIPPCLVNTALNEGYHEAVAPISSSSDDASTYVLPSVAPNGSP 793 (1021)
Q Consensus 714 L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 793 (1021)
|+.|++++|...+.+|..++++++|+.|++++|+..+.+|... +
T Consensus 780 L~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~----------------------------------- 823 (1153)
T PLN03210 780 LTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-N----------------------------------- 823 (1153)
T ss_pred chheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-C-----------------------------------
Confidence 9999999999888999999999999999999987666777543 1
Q ss_pred CCCcceEEEeecCccccccccccccccEEEcccceecCcCcccccCCCCCCEEEcCCCcCccchhhcccCCCCCCEEeCc
Q 001719 794 IGEEETVQFTTKNMSYYYQGRILMSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLS 873 (1021)
Q Consensus 794 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs 873 (1021)
+.+|+.|++++|..-..+|.. .++|+.|+|++|.++ .+|.++..+++|+.|+|+
T Consensus 824 ----------------------L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~ 877 (1153)
T PLN03210 824 ----------------------LESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMN 877 (1153)
T ss_pred ----------------------ccccCEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECC
Confidence 237889999998765566654 367999999999999 689999999999999999
Q ss_pred C-ccCCCCCCcccccCCCCCEEEccCCc
Q 001719 874 Y-NLLLGKIPPQLIVLNTLAVFRVANNN 900 (1021)
Q Consensus 874 ~-N~l~g~ip~~l~~l~~L~~L~ls~N~ 900 (1021)
+ |++. .+|..+..++.|+.++++++.
T Consensus 878 ~C~~L~-~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 878 GCNNLQ-RVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred CCCCcC-ccCcccccccCCCeeecCCCc
Confidence 9 5565 688888999999999999874
No 14
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.87 E-value=3.4e-24 Score=219.74 Aligned_cols=393 Identities=21% Similarity=0.182 Sum_probs=234.6
Q ss_pred EEcCCCCCCcccchhhhhcCCCCCEEECCCCcCCCCCCccccCCCCCCEEEcCCCcCCCccchhhhhcCCCCcEEECCC-
Q 001719 476 LDVSTNFFRGHIPVEIGTYLSGLMDLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGEIPDRMAIGCFSLEILALSN- 554 (1021)
Q Consensus 476 L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~- 554 (1021)
++-++-.++ ++|..+ .+.-..++|..|+|+.+.|.+|+.+++|+.||||+|+|+ .|.+..|.++.+|..|-+.+
T Consensus 51 VdCr~~GL~-eVP~~L---P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is-~I~p~AF~GL~~l~~Lvlyg~ 125 (498)
T KOG4237|consen 51 VDCRGKGLT-EVPANL---PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNIS-FIAPDAFKGLASLLSLVLYGN 125 (498)
T ss_pred EEccCCCcc-cCcccC---CCcceEEEeccCCcccCChhhccchhhhceecccccchh-hcChHhhhhhHhhhHHHhhcC
Confidence 344444444 677765 567889999999999888889999999999999999998 77777788999888877666
Q ss_pred CcccccccccccCCCCccEEEccCCcccccCCccccccCccCeEEccCCcCCCcchhhhcCCCCCcEEECCCCccc----
Q 001719 555 NNLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPKSLSKCYLLGGLYLSDNHLSGKIPRWLGNLSALEDIIMPNNNLE---- 630 (1021)
Q Consensus 555 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~---- 630 (1021)
|+|+......|.++.+|+.|.+.-|++.-...+.|..+++|..|.+.+|.+...--..|..+.+++.+.+..|.+.
T Consensus 126 NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCn 205 (498)
T KOG4237|consen 126 NKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCN 205 (498)
T ss_pred CchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccc
Confidence 8899877788999999999999999988777888999999999999999888544447888889999888888732
Q ss_pred --------CCccccccCCCCCCEEEccCCccccCCCCCC---------------------------CCCcccEEEccCCc
Q 001719 631 --------GPIPIEFCQLDYLKILDLSNNTIFGTLPSCF---------------------------SPAYIEEIHLSKNK 675 (1021)
Q Consensus 631 --------~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~---------------------------~~~~L~~L~L~~n~ 675 (1021)
-..|..++.........+.+.++...-+..| .+++|+.|+|++|+
T Consensus 206 L~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~ 285 (498)
T KOG4237|consen 206 LPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNK 285 (498)
T ss_pred cchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCc
Confidence 1223333333333333333333322222222 23445555555555
Q ss_pred cccccchhhhcCccccEEEccCCccCCCCCccccCCCCCcEEEcccccccccCCccccCCCCCCEEeccCCcCcccCC-c
Q 001719 676 IEGRLESIIHYSPYLMTLDLSYNCLHGSIPTWIDRLPQLSYLLLANNYIEGEIPIQICQLKEVRLIDLSHNNLSGHIP-P 754 (1021)
Q Consensus 676 l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip-~ 754 (1021)
++++-+.+|.....++.|.|..|++...-...|.++..|+.|+|.+|+|+..-|.+|..+.+|..|+|-.|++...-- .
T Consensus 286 i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~ 365 (498)
T KOG4237|consen 286 ITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLA 365 (498)
T ss_pred cchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchH
Confidence 555444455555555555555555443333444445555555555555554445555555555555554444431100 0
Q ss_pred ccccccccccccccccccCCCCCCCcccccCCCCCCCCCC----CCcceEEE---eecCcc---c---cccccccccc-c
Q 001719 755 CLVNTALNEGYHEAVAPISSSSDDASTYVLPSVAPNGSPI----GEEETVQF---TTKNMS---Y---YYQGRILMSM-S 820 (1021)
Q Consensus 755 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~---~~~~~~---~---~~~~~~~~~L-~ 820 (1021)
+++.+- .... ......+..+. .....+.+ ...+-+ . .+.-...+-+ +
T Consensus 366 wl~~Wl------------------r~~~-~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~t 426 (498)
T KOG4237|consen 366 WLGEWL------------------RKKS-VVGNPRCQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDT 426 (498)
T ss_pred HHHHHH------------------hhCC-CCCCCCCCCCchhccccchhccccccccCCccccCCCCCCCCCCCcchhhh
Confidence 000000 0000 00111111111 11111111 111000 0 0000011111 1
Q ss_pred EEEcccceecCcCcccccCCCCCCEEEcCCCcCccchhhcccCCCCCCEEeCcCccCCCCCCcccccCCCCCEEEccCC
Q 001719 821 GIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLLGKIPPQLIVLNTLAVFRVANN 899 (1021)
Q Consensus 821 ~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N 899 (1021)
....|++.+. .+|..+- ..-++|++.+|.++ .+|.. .+.+| .+|+|+|+++..--..|.+++.|.+|-+++|
T Consensus 427 VvRcSnk~lk-~lp~~iP--~d~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 427 VVRCSNKLLK-LLPRGIP--VDVTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred hHhhcccchh-hcCCCCC--chhHHHhcccchhc-ccCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence 2334555554 5554443 34567888899988 66766 66777 8999999998777778888999999888886
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.86 E-value=2.1e-21 Score=228.20 Aligned_cols=193 Identities=24% Similarity=0.321 Sum_probs=95.1
Q ss_pred CCEEECCCCcCCCCCCccccCCCCCCEEEcCCCcCCCccchhhhhcCCCCcEEECCCCcccccccccccCCCCccEEEcc
Q 001719 498 LMDLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGEIPDRMAIGCFSLEILALSNNNLQGHIFSKKFNLTNLMRLQLD 577 (1021)
Q Consensus 498 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 577 (1021)
-..|++++|.++ .+|..+. ++|+.|++++|+++ .+|. .+++| ++|+++
T Consensus 203 ~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~----lp~~L------------------------k~LdLs 250 (788)
T PRK15387 203 NAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA----LPPEL------------------------RTLEVS 250 (788)
T ss_pred CcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCC----CCCCC------------------------cEEEec
Confidence 445666666665 4454443 25566666666655 4443 12344 444444
Q ss_pred CCcccccCCccccccCccCeEEccCCcCCCcchhhhcCCCCCcEEECCCCcccCCccccccCCCCCCEEEccCCccccCC
Q 001719 578 GNKFIGEIPKSLSKCYLLGGLYLSDNHLSGKIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLDYLKILDLSNNTIFGTL 657 (1021)
Q Consensus 578 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~ 657 (1021)
+|+++ .+|.. .++|+.|++++|.+. .+|.. .++|+.|++++|+++ .+|. ..++|+.|++++|++.+ +
T Consensus 251 ~N~Lt-sLP~l---p~sL~~L~Ls~N~L~-~Lp~l---p~~L~~L~Ls~N~Lt-~LP~---~p~~L~~LdLS~N~L~~-L 317 (788)
T PRK15387 251 GNQLT-SLPVL---PPGLLELSIFSNPLT-HLPAL---PSGLCKLWIFGNQLT-SLPV---LPPGLQELSVSDNQLAS-L 317 (788)
T ss_pred CCccC-cccCc---ccccceeeccCCchh-hhhhc---hhhcCEEECcCCccc-cccc---cccccceeECCCCcccc-C
Confidence 44444 22321 234455555555544 23321 134555566666555 2333 13456666666666654 2
Q ss_pred CCCCCCCcccEEEccCCccccccchhhhcCccccEEEccCCccCCCCCccccCCCCCcEEEcccccccccCCccccCCCC
Q 001719 658 PSCFSPAYIEEIHLSKNKIEGRLESIIHYSPYLMTLDLSYNCLHGSIPTWIDRLPQLSYLLLANNYIEGEIPIQICQLKE 737 (1021)
Q Consensus 658 p~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~ 737 (1021)
|.. +..|+.|++++|++++. |. ...+|+.|+|++|++++ +|.. .++|+.|++++|++++ +|... .+
T Consensus 318 p~l--p~~L~~L~Ls~N~L~~L-P~---lp~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~-LP~l~---~~ 383 (788)
T PRK15387 318 PAL--PSELCKLWAYNNQLTSL-PT---LPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPALP---SG 383 (788)
T ss_pred CCC--cccccccccccCccccc-cc---cccccceEecCCCccCC-CCCC---Ccccceehhhcccccc-Ccccc---cc
Confidence 321 23455566666665532 21 11356666666666663 3332 2345556666666652 44322 34
Q ss_pred CCEEeccCCcCc
Q 001719 738 VRLIDLSHNNLS 749 (1021)
Q Consensus 738 L~~L~Ls~N~l~ 749 (1021)
|+.|++++|+++
T Consensus 384 L~~LdLs~N~Lt 395 (788)
T PRK15387 384 LKELIVSGNRLT 395 (788)
T ss_pred cceEEecCCccc
Confidence 556666666655
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.85 E-value=1.1e-20 Score=222.21 Aligned_cols=265 Identities=24% Similarity=0.320 Sum_probs=167.0
Q ss_pred CcCEEEcCCCCCCcccchhhhhcCCCCCEEECCCCcCCCCCCccccCCCCCCEEEcCCCcCCCccchhhhhcCCCCcEEE
Q 001719 472 KLATLDVSTNFFRGHIPVEIGTYLSGLMDLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGEIPDRMAIGCFSLEILA 551 (1021)
Q Consensus 472 ~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~ 551 (1021)
.-..|+++.+.++ .+|..+. ++|+.|++.+|+++. +|. ..++|++|++++|+++ .+|.. .++|+.|+
T Consensus 202 ~~~~LdLs~~~Lt-sLP~~l~---~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~Lt-sLP~l----p~sL~~L~ 268 (788)
T PRK15387 202 GNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLT-SLPVL----PPGLLELS 268 (788)
T ss_pred CCcEEEcCCCCCC-cCCcchh---cCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccC-cccCc----ccccceee
Confidence 4568999999998 7998774 589999999999994 564 3588999999999999 67742 46888888
Q ss_pred CCCCcccccccccccCCCCccEEEccCCcccccCCccccccCccCeEEccCCcCCCcchhhhcCCCCCcEEECCCCcccC
Q 001719 552 LSNNNLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPKSLSKCYLLGGLYLSDNHLSGKIPRWLGNLSALEDIIMPNNNLEG 631 (1021)
Q Consensus 552 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~ 631 (1021)
+++|.+.. +|.. .++|+.|++++|+++ .+|.. .++|+.|++++|++++ +|.. ..+|+.|++++|.+++
T Consensus 269 Ls~N~L~~-Lp~l---p~~L~~L~Ls~N~Lt-~LP~~---p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~~ 336 (788)
T PRK15387 269 IFSNPLTH-LPAL---PSGLCKLWIFGNQLT-SLPVL---PPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLTS 336 (788)
T ss_pred ccCCchhh-hhhc---hhhcCEEECcCCccc-ccccc---ccccceeECCCCcccc-CCCC---cccccccccccCcccc
Confidence 88888774 3332 246777788887776 34432 3456666776666663 3321 1234555555555542
Q ss_pred CccccccCCCCCCEEEccCCccccCCCCCCCCCcccEEEccCCccccccchhhhcCccccEEEccCCccCCCCCccccCC
Q 001719 632 PIPIEFCQLDYLKILDLSNNTIFGTLPSCFSPAYIEEIHLSKNKIEGRLESIIHYSPYLMTLDLSYNCLHGSIPTWIDRL 711 (1021)
Q Consensus 632 ~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l 711 (1021)
+|.. +.+|+.|+|++|++++. |.. .++|+.|++++|++++ +|.. .
T Consensus 337 -LP~l--------------------------p~~Lq~LdLS~N~Ls~L-P~l---p~~L~~L~Ls~N~L~~-LP~l---~ 381 (788)
T PRK15387 337 -LPTL--------------------------PSGLQELSVSDNQLASL-PTL---PSELYKLWAYNNRLTS-LPAL---P 381 (788)
T ss_pred -cccc--------------------------ccccceEecCCCccCCC-CCC---Ccccceehhhcccccc-Cccc---c
Confidence 3321 22444455555544432 211 2355666677777663 4543 2
Q ss_pred CCCcEEEcccccccccCCccccCCCCCCEEeccCCcCcccCCcccccccccccccccccccCCCCCCCcccccCCCCCCC
Q 001719 712 PQLSYLLLANNYIEGEIPIQICQLKEVRLIDLSHNNLSGHIPPCLVNTALNEGYHEAVAPISSSSDDASTYVLPSVAPNG 791 (1021)
Q Consensus 712 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 (1021)
.+|+.|++++|++++ +|.. .++|+.|++++|+++ .+|...
T Consensus 382 ~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Ls-sIP~l~----------------------------------- 421 (788)
T PRK15387 382 SGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLT-SLPMLP----------------------------------- 421 (788)
T ss_pred cccceEEecCCcccC-CCCc---ccCCCEEEccCCcCC-CCCcch-----------------------------------
Confidence 467788888888873 5533 246777777777776 344311
Q ss_pred CCCCCcceEEEeecCccccccccccccccEEEcccceecCcCcccccCCCCCCEEEcCCCcCccchhhccc
Q 001719 792 SPIGEEETVQFTTKNMSYYYQGRILMSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFS 862 (1021)
Q Consensus 792 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l~ 862 (1021)
..|+.|++++|+|+ .+|..++.++.|+.|+|++|.|+|.+|..+.
T Consensus 422 -------------------------~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~ 466 (788)
T PRK15387 422 -------------------------SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALR 466 (788)
T ss_pred -------------------------hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHH
Confidence 12445666666666 5666666666666666666666666665553
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.78 E-value=5.4e-19 Score=209.81 Aligned_cols=76 Identities=18% Similarity=0.328 Sum_probs=40.5
Q ss_pred CCCEEECCCCcCCCCCCccccCCCCCCEEEcCCCcCCCccchhhhhcCCCCcEEECCCCcccccccccccCCCCccEEEc
Q 001719 497 GLMDLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGEIPDRMAIGCFSLEILALSNNNLQGHIFSKKFNLTNLMRLQL 576 (1021)
Q Consensus 497 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 576 (1021)
+...|++++++++ .+|..+. +.|+.|++++|+++ .+|..++ .+|++|++++|.+++ +|..+. .+|+.|++
T Consensus 179 ~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~---~nL~~L~Ls~N~Lts-LP~~l~--~~L~~L~L 248 (754)
T PRK15370 179 NKTELRLKILGLT-TIPACIP--EQITTLILDNNELK-SLPENLQ---GNIKTLYANSNQLTS-IPATLP--DTIQEMEL 248 (754)
T ss_pred CceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCC-cCChhhc---cCCCEEECCCCcccc-CChhhh--ccccEEEC
Confidence 4566777766666 3454432 35666777777666 5555443 356666666665552 233221 23445555
Q ss_pred cCCccc
Q 001719 577 DGNKFI 582 (1021)
Q Consensus 577 ~~n~l~ 582 (1021)
++|.+.
T Consensus 249 s~N~L~ 254 (754)
T PRK15370 249 SINRIT 254 (754)
T ss_pred cCCccC
Confidence 555444
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.77 E-value=8.3e-19 Score=208.19 Aligned_cols=140 Identities=26% Similarity=0.330 Sum_probs=91.0
Q ss_pred CCcCEEEcCCCCCCcccchhhhhcCCCCCEEECCCCcCCCCCCccccCCCCCCEEEcCCCcCCCccchhhhhcCCCCcEE
Q 001719 471 QKLATLDVSTNFFRGHIPVEIGTYLSGLMDLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGEIPDRMAIGCFSLEIL 550 (1021)
Q Consensus 471 ~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L 550 (1021)
.+.+.|+++++.++ .+|..+ .++|+.|++++|+++ .+|..+. ++|++|++++|+++ .+|..+. .+|+.|
T Consensus 178 ~~~~~L~L~~~~Lt-sLP~~I---p~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~---~~L~~L 246 (754)
T PRK15370 178 NNKTELRLKILGLT-TIPACI---PEQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP---DTIQEM 246 (754)
T ss_pred cCceEEEeCCCCcC-cCCccc---ccCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh---ccccEE
Confidence 34578888888887 677655 357888888888888 4555443 57888888888887 7777653 478888
Q ss_pred ECCCCcccccccccccCCCCccEEEccCCcccccCCccccccCccCeEEccCCcCCCcchhhhcCCCCCcEEECCCCccc
Q 001719 551 ALSNNNLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPKSLSKCYLLGGLYLSDNHLSGKIPRWLGNLSALEDIIMPNNNLE 630 (1021)
Q Consensus 551 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~ 630 (1021)
++++|.+. .+|..+. .+|+.|++++|++. .+|..+. ++|+.|++++|++++ +|..+. ++|+.|++++|.++
T Consensus 247 ~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt 317 (754)
T PRK15370 247 ELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLT 317 (754)
T ss_pred ECcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCccc
Confidence 88888887 4455443 46777777777776 4554432 356666666666553 332221 23444444444444
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.71 E-value=1.4e-18 Score=193.16 Aligned_cols=65 Identities=23% Similarity=0.287 Sum_probs=29.4
Q ss_pred cCCCCCCEEEcCCCcCccchhhcccC-----CCCCCEEeCcCccCC----CCCCcccccCCCCCEEEccCCcce
Q 001719 838 GYLTRIRALNLSHNNLTGTIPTTFSN-----LKQIESLDLSYNLLL----GKIPPQLIVLNTLAVFRVANNNLS 902 (1021)
Q Consensus 838 ~~l~~L~~L~Ls~N~l~~~~p~~l~~-----l~~L~~LdLs~N~l~----g~ip~~l~~l~~L~~L~ls~N~l~ 902 (1021)
..+++|++|++++|.+++.....+.. .+.|++|++++|.++ ..++..+..++.|+++++++|+++
T Consensus 218 ~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~ 291 (319)
T cd00116 218 ASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFG 291 (319)
T ss_pred cccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCc
Confidence 34444555555555554422222211 245555555555554 122233344455555555555555
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.71 E-value=1.5e-18 Score=192.85 Aligned_cols=275 Identities=23% Similarity=0.244 Sum_probs=200.8
Q ss_pred EEEccCCccc-ccCCccccccCccCeEEccCCcCCCc----chhhhcCCCCCcEEECCCCcccC------CccccccCCC
Q 001719 573 RLQLDGNKFI-GEIPKSLSKCYLLGGLYLSDNHLSGK----IPRWLGNLSALEDIIMPNNNLEG------PIPIEFCQLD 641 (1021)
Q Consensus 573 ~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~l~~n~l~~------~~p~~l~~l~ 641 (1021)
.|+|..+.++ ...+..+..+..|+.++++++.++.. ++..+...+++++++++++.+.+ .++..+..++
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~ 81 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC 81 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence 4778888777 34455566778899999999998653 56667788889999999998762 2345677899
Q ss_pred CCCEEEccCCccccCCCCCC-CC---CcccEEEccCCcccc----ccchhhhcC-ccccEEEccCCccCCC----CCccc
Q 001719 642 YLKILDLSNNTIFGTLPSCF-SP---AYIEEIHLSKNKIEG----RLESIIHYS-PYLMTLDLSYNCLHGS----IPTWI 708 (1021)
Q Consensus 642 ~L~~L~Ls~n~l~~~~p~~~-~~---~~L~~L~L~~n~l~~----~~~~~~~~~-~~L~~L~Ls~N~l~~~----~p~~~ 708 (1021)
+|+.|++++|.+.+..+..+ .. ++|++|++++|++++ .+...+..+ ++|+.|++++|.+++. ++..+
T Consensus 82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~ 161 (319)
T cd00116 82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKAL 161 (319)
T ss_pred ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHH
Confidence 99999999999976554433 22 449999999999884 233455666 8999999999999843 34456
Q ss_pred cCCCCCcEEEccccccccc----CCccccCCCCCCEEeccCCcCcccCCcccccccccccccccccccCCCCCCCccccc
Q 001719 709 DRLPQLSYLLLANNYIEGE----IPIQICQLKEVRLIDLSHNNLSGHIPPCLVNTALNEGYHEAVAPISSSSDDASTYVL 784 (1021)
Q Consensus 709 ~~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 (1021)
..+++|++|++++|.+++. ++..+..+++|+.|++++|.+++..+..+....
T Consensus 162 ~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~------------------------ 217 (319)
T cd00116 162 RANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETL------------------------ 217 (319)
T ss_pred HhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHh------------------------
Confidence 6778999999999999853 344556677999999999998743222221110
Q ss_pred CCCCCCCCCCCCcceEEEeecCccccccccccccccEEEcccceecCcCccccc-----CCCCCCEEEcCCCcCc----c
Q 001719 785 PSVAPNGSPIGEEETVQFTTKNMSYYYQGRILMSMSGIDLSCNKLTGEIPTQIG-----YLTRIRALNLSHNNLT----G 855 (1021)
Q Consensus 785 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~~~-----~l~~L~~L~Ls~N~l~----~ 855 (1021)
...++|+.|++++|.+++.....+. ..+.|+.|++++|.++ .
T Consensus 218 -----------------------------~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~ 268 (319)
T cd00116 218 -----------------------------ASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAK 268 (319)
T ss_pred -----------------------------cccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHH
Confidence 1234789999999999864333332 2378999999999997 3
Q ss_pred chhhcccCCCCCCEEeCcCccCCCC----CCcccccC-CCCCEEEccCCc
Q 001719 856 TIPTTFSNLKQIESLDLSYNLLLGK----IPPQLIVL-NTLAVFRVANNN 900 (1021)
Q Consensus 856 ~~p~~l~~l~~L~~LdLs~N~l~g~----ip~~l~~l-~~L~~L~ls~N~ 900 (1021)
.++..+..+++|+++|+++|.++.. +...+... +.|+++++.+|.
T Consensus 269 ~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 269 DLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred HHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence 3456677789999999999999854 33344444 567777777764
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.66 E-value=2.9e-18 Score=156.12 Aligned_cols=170 Identities=28% Similarity=0.468 Sum_probs=130.4
Q ss_pred CCCCCCCCCcccEEEccCCccccccchhhhcCccccEEEccCCccCCCCCccccCCCCCcEEEcccccccccCCccccCC
Q 001719 656 TLPSCFSPAYIEEIHLSKNKIEGRLESIIHYSPYLMTLDLSYNCLHGSIPTWIDRLPQLSYLLLANNYIEGEIPIQICQL 735 (1021)
Q Consensus 656 ~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l 735 (1021)
.+|..|..+.++.|-|++|+++. +|..+..+.+|+.|++++|++. .+|..++.+++|+.|+++-|++. ..|..|+.+
T Consensus 25 ~~~gLf~~s~ITrLtLSHNKl~~-vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~ 101 (264)
T KOG0617|consen 25 ELPGLFNMSNITRLTLSHNKLTV-VPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSF 101 (264)
T ss_pred hcccccchhhhhhhhcccCceee-cCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCC
Confidence 34555666777788888888874 4556788889999999999998 68888999999999999999987 789999999
Q ss_pred CCCCEEeccCCcCcc-cCCcccccccccccccccccccCCCCCCCcccccCCCCCCCCCCCCcceEEEeecCcccccccc
Q 001719 736 KEVRLIDLSHNNLSG-HIPPCLVNTALNEGYHEAVAPISSSSDDASTYVLPSVAPNGSPIGEEETVQFTTKNMSYYYQGR 814 (1021)
Q Consensus 736 ~~L~~L~Ls~N~l~g-~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 814 (1021)
+.|+.|||++|+++. .+|..+..
T Consensus 102 p~levldltynnl~e~~lpgnff~-------------------------------------------------------- 125 (264)
T KOG0617|consen 102 PALEVLDLTYNNLNENSLPGNFFY-------------------------------------------------------- 125 (264)
T ss_pred chhhhhhccccccccccCCcchhH--------------------------------------------------------
Confidence 999999999998863 23433322
Q ss_pred ccccccEEEcccceecCcCcccccCCCCCCEEEcCCCcCccchhhcccCCCCCCEEeCcCccCCCCCCcccccC
Q 001719 815 ILMSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLLGKIPPQLIVL 888 (1021)
Q Consensus 815 ~~~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~g~ip~~l~~l 888 (1021)
+..|+.|+|+.|.|. .+|..++.+++|+.|.+..|.+- ..|..++.++.|++|++.+|+++ .+|+.++++
T Consensus 126 -m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~l 195 (264)
T KOG0617|consen 126 -MTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELANL 195 (264)
T ss_pred -HHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChhhhhh
Confidence 224666777888877 77777888888888888888777 67777888888888888888877 666665543
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.61 E-value=9.3e-18 Score=152.82 Aligned_cols=180 Identities=29% Similarity=0.466 Sum_probs=154.1
Q ss_pred hhcCccccEEEccCCccCCCCCccccCCCCCcEEEcccccccccCCccccCCCCCCEEeccCCcCcccCCcccccccccc
Q 001719 684 IHYSPYLMTLDLSYNCLHGSIPTWIDRLPQLSYLLLANNYIEGEIPIQICQLKEVRLIDLSHNNLSGHIPPCLVNTALNE 763 (1021)
Q Consensus 684 ~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~ 763 (1021)
+.++.+.+.|.|++|+++ .+|..++.+.+|++|++.+|++. .+|..++.+++|++|+++-|++. .+|..++..+
T Consensus 29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p--- 102 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFP--- 102 (264)
T ss_pred ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCc---
Confidence 345677889999999999 67788999999999999999998 89999999999999999999997 6777766544
Q ss_pred cccccccccCCCCCCCcccccCCCCCCCCCCCCcceEEEeecCccccccccccccccEEEcccceecC-cCcccccCCCC
Q 001719 764 GYHEAVAPISSSSDDASTYVLPSVAPNGSPIGEEETVQFTTKNMSYYYQGRILMSMSGIDLSCNKLTG-EIPTQIGYLTR 842 (1021)
Q Consensus 764 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g-~ip~~~~~l~~ 842 (1021)
.|+.|||.+|+++. ..|..|..++.
T Consensus 103 ------------------------------------------------------~levldltynnl~e~~lpgnff~m~t 128 (264)
T KOG0617|consen 103 ------------------------------------------------------ALEVLDLTYNNLNENSLPGNFFYMTT 128 (264)
T ss_pred ------------------------------------------------------hhhhhhccccccccccCCcchhHHHH
Confidence 67889999999975 67899999999
Q ss_pred CCEEEcCCCcCccchhhcccCCCCCCEEeCcCccCCCCCCcccccCCCCCEEEccCCcceecCCCcccccCCC---Cccc
Q 001719 843 IRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLLGKIPPQLIVLNTLAVFRVANNNLSGKIPDRVAQFSTF---EEDS 919 (1021)
Q Consensus 843 L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~---~~~~ 919 (1021)
|+.|+|+.|.+. .+|..++++++|+.|.+..|.+- ..|..++.++.|+.|.+.+|+|+...|+ ++++.-. ....
T Consensus 129 lralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~vlppe-l~~l~l~~~k~v~r 205 (264)
T KOG0617|consen 129 LRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLTVLPPE-LANLDLVGNKQVMR 205 (264)
T ss_pred HHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceeeecChh-hhhhhhhhhHHHHh
Confidence 999999999999 88999999999999999999998 7899999999999999999999965555 3554322 2234
Q ss_pred ccCccCC
Q 001719 920 YEGNPFL 926 (1021)
Q Consensus 920 ~~gN~~l 926 (1021)
.+.|||.
T Consensus 206 ~E~NPwv 212 (264)
T KOG0617|consen 206 MEENPWV 212 (264)
T ss_pred hhhCCCC
Confidence 5667764
No 23
>PLN03150 hypothetical protein; Provisional
Probab=99.59 E-value=3.1e-15 Score=177.91 Aligned_cols=119 Identities=33% Similarity=0.603 Sum_probs=108.8
Q ss_pred cccEEEcccceecCcCcccccCCCCCCEEEcCCCcCccchhhcccCCCCCCEEeCcCccCCCCCCcccccCCCCCEEEcc
Q 001719 818 SMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLLGKIPPQLIVLNTLAVFRVA 897 (1021)
Q Consensus 818 ~L~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls 897 (1021)
.++.|+|++|.++|.+|..++.+++|+.|+|++|+++|.+|..++++++|+.|||++|+++|.+|..+.++++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcceecCCCccccc-CCCCcccccCccCCCCCCCCCCCC
Q 001719 898 NNNLSGKIPDRVAQF-STFEEDSYEGNPFLCGLPLSKSCD 936 (1021)
Q Consensus 898 ~N~l~g~ip~~~~~~-~~~~~~~~~gN~~lC~~~l~~~c~ 936 (1021)
+|+++|.+|..+... ..+..+++.+|+++|+.|....|.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~ 538 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG 538 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence 999999999876543 355678899999999977555664
No 24
>PLN03150 hypothetical protein; Provisional
Probab=99.39 E-value=1.2e-12 Score=155.89 Aligned_cols=151 Identities=29% Similarity=0.432 Sum_probs=95.1
Q ss_pred cCChHHHHHHHHHhhhhCCCCcccCCcccccCCCCCCCce----eeceeEecC--CCC--cEEEEecCCccccccccccC
Q 001719 25 EGCLEQERSALLQLKHFFNDDQRLQNWVDAADDENYSDCC----QWERVECNK--TTG--RVIKLDLGDIKNRKNRKSER 96 (1021)
Q Consensus 25 ~~c~~~~~~~ll~~k~~~~~~~~l~~w~~~~~~~~~~~~c----~w~gv~c~~--~~~--~v~~l~l~~~~~~~~~~~~~ 96 (1021)
..+.++|.+||++||+++.++.. .+|.. ..|| .|.||.|.. .++ +|+.|+|
T Consensus 367 ~~t~~~~~~aL~~~k~~~~~~~~-~~W~g-------~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L------------- 425 (623)
T PLN03150 367 SKTLLEEVSALQTLKSSLGLPLR-FGWNG-------DPCVPQQHPWSGADCQFDSTKGKWFIDGLGL------------- 425 (623)
T ss_pred cccCchHHHHHHHHHHhcCCccc-CCCCC-------CCCCCcccccccceeeccCCCCceEEEEEEC-------------
Confidence 45677899999999999875532 47953 3443 799999952 111 2444444
Q ss_pred ccCcccccCCCCCCEEeCCCCCCCCccccchhhhccCCCCCCEEeCCCCCCCCcccccCCCCCCCCEEEcCCcccccccC
Q 001719 97 HLNASLFTPFQQLESLDLSWNNIAGCVENEGVERLSRLNNLKFLLLDSNYFNNSIFSSLGGLSSLRILSLADNRLNGSID 176 (1021)
Q Consensus 97 ~~~~~~~~~l~~L~~LdLs~n~i~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~ 176 (1021)
++|.+.+..+ ..++++++|++|+|++|.+.+.+|..++.+++|++|+|++|.++|.+|
T Consensus 426 ------------------~~n~L~g~ip----~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP 483 (623)
T PLN03150 426 ------------------DNQGLRGFIP----NDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIP 483 (623)
T ss_pred ------------------CCCCccccCC----HHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCc
Confidence 4445555444 356667777777777777766667667777777777777777766666
Q ss_pred hhccCCCCCCCEEeCCCCCCCCCCCcccccccCC-CCCCCEEECCCCC
Q 001719 177 IKGLDSLSNLEELDMSYNAIDNLVVPQGLERLST-LSNLKFLRLDYNS 223 (1021)
Q Consensus 177 ~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~-l~~L~~L~L~~n~ 223 (1021)
. .++++++|++|+|++|.+++..|. .+.. ..++..+++.+|.
T Consensus 484 ~-~l~~L~~L~~L~Ls~N~l~g~iP~----~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 484 E-SLGQLTSLRILNLNGNSLSGRVPA----ALGGRLLHRASFNFTDNA 526 (623)
T ss_pred h-HHhcCCCCCEEECcCCcccccCCh----HHhhccccCceEEecCCc
Confidence 5 666666666666666666665553 2222 2334455555543
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.23 E-value=5.2e-13 Score=144.47 Aligned_cols=193 Identities=26% Similarity=0.387 Sum_probs=115.9
Q ss_pred CCCCCEEEccCCccccCCCCCC-CCCcccEEEccCCccccccchhhhcCccccEEEccCCccCCCCCccccCCCCCcEEE
Q 001719 640 LDYLKILDLSNNTIFGTLPSCF-SPAYIEEIHLSKNKIEGRLESIIHYSPYLMTLDLSYNCLHGSIPTWIDRLPQLSYLL 718 (1021)
Q Consensus 640 l~~L~~L~Ls~n~l~~~~p~~~-~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 718 (1021)
+.--...|++.|++.. +|..+ .+..|+.+.|..|.+. .+|..+.++..|+.+||+.|+++ ..|..+..|+ |+.|.
T Consensus 74 ltdt~~aDlsrNR~~e-lp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli 149 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFSE-LPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLI 149 (722)
T ss_pred ccchhhhhcccccccc-CchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEE
Confidence 4444556677777653 33332 4555666666666665 44556666666677777777666 5555555554 66666
Q ss_pred cccccccccCCccccCCCCCCEEeccCCcCcccCCcccccccccccccccccccCCCCCCCcccccCCCCCCCCCCCCcc
Q 001719 719 LANNYIEGEIPIQICQLKEVRLIDLSHNNLSGHIPPCLVNTALNEGYHEAVAPISSSSDDASTYVLPSVAPNGSPIGEEE 798 (1021)
Q Consensus 719 L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 798 (1021)
+++|+++ .+|..++.+..|..||.+.|.+. .+|+.++.+.
T Consensus 150 ~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~-------------------------------------- 189 (722)
T KOG0532|consen 150 VSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLT-------------------------------------- 189 (722)
T ss_pred EecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHH--------------------------------------
Confidence 6666666 56666666666666666666665 4555444333
Q ss_pred eEEEeecCccccccccccccccEEEcccceecCcCcccccCCCCCCEEEcCCCcCccchhhcccCCCCCCEEeCcCccCC
Q 001719 799 TVQFTTKNMSYYYQGRILMSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLL 878 (1021)
Q Consensus 799 ~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~ 878 (1021)
+|+.|.+..|++. ..|.++..|+ |..||+|+|+++ .||-.|.+|+.|++|-|.+|.|.
T Consensus 190 -------------------slr~l~vrRn~l~-~lp~El~~Lp-Li~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 190 -------------------SLRDLNVRRNHLE-DLPEELCSLP-LIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred -------------------HHHHHHHhhhhhh-hCCHHHhCCc-eeeeecccCcee-ecchhhhhhhhheeeeeccCCCC
Confidence 4556666666666 5666666443 566777777776 66666777777777777777766
Q ss_pred CCCCccccc---CCCCCEEEccCC
Q 001719 879 GKIPPQLIV---LNTLAVFRVANN 899 (1021)
Q Consensus 879 g~ip~~l~~---l~~L~~L~ls~N 899 (1021)
..|.++.. ..=.++|+..-.
T Consensus 248 -SPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 248 -SPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred -CChHHHHhccceeeeeeecchhc
Confidence 44444432 223344444444
No 26
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.23 E-value=2.4e-13 Score=146.96 Aligned_cols=175 Identities=29% Similarity=0.471 Sum_probs=151.5
Q ss_pred CCcccEEEccCCccccccchhhhcCccccEEEccCCccCCCCCccccCCCCCcEEEcccccccccCCccccCCCCCCEEe
Q 001719 663 PAYIEEIHLSKNKIEGRLESIIHYSPYLMTLDLSYNCLHGSIPTWIDRLPQLSYLLLANNYIEGEIPIQICQLKEVRLID 742 (1021)
Q Consensus 663 ~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ 742 (1021)
...-...+++.|++. .+|..+..+..|+.+.|..|.+. .+|..+.++..|.+|+|+.|+++ ..|..++.|+ |+.|-
T Consensus 74 ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli 149 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLI 149 (722)
T ss_pred ccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEE
Confidence 444567889999988 56777888888999999999998 78999999999999999999998 7888888885 88999
Q ss_pred ccCCcCcccCCcccccccccccccccccccCCCCCCCcccccCCCCCCCCCCCCcceEEEeecCccccccccccccccEE
Q 001719 743 LSHNNLSGHIPPCLVNTALNEGYHEAVAPISSSSDDASTYVLPSVAPNGSPIGEEETVQFTTKNMSYYYQGRILMSMSGI 822 (1021)
Q Consensus 743 Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L 822 (1021)
+++|+++ .+|..++.. ..|..|
T Consensus 150 ~sNNkl~-~lp~~ig~~---------------------------------------------------------~tl~~l 171 (722)
T KOG0532|consen 150 VSNNKLT-SLPEEIGLL---------------------------------------------------------PTLAHL 171 (722)
T ss_pred EecCccc-cCCcccccc---------------------------------------------------------hhHHHh
Confidence 9999997 778776622 367789
Q ss_pred EcccceecCcCcccccCCCCCCEEEcCCCcCccchhhcccCCCCCCEEeCcCccCCCCCCcccccCCCCCEEEccCCcce
Q 001719 823 DLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLLGKIPPQLIVLNTLAVFRVANNNLS 902 (1021)
Q Consensus 823 ~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~ 902 (1021)
|.+.|.+. .+|..++++.+|+.|++..|++. ..|..+..| .|..||+|+|+++ .||-.|.+|+.|++|-|.+|.|.
T Consensus 172 d~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 172 DVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred hhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee-ecchhhhhhhhheeeeeccCCCC
Confidence 99999998 89999999999999999999999 567777744 4889999999999 89999999999999999999997
Q ss_pred e
Q 001719 903 G 903 (1021)
Q Consensus 903 g 903 (1021)
.
T Consensus 248 S 248 (722)
T KOG0532|consen 248 S 248 (722)
T ss_pred C
Confidence 4
No 27
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.17 E-value=2.4e-11 Score=138.84 Aligned_cols=123 Identities=34% Similarity=0.424 Sum_probs=60.3
Q ss_pred cEEECCCCcccCCccccccCCCCCCEEEccCCccccCCCCCCCCC-cccEEEccCCccccccchhhhcCccccEEEccCC
Q 001719 620 EDIIMPNNNLEGPIPIEFCQLDYLKILDLSNNTIFGTLPSCFSPA-YIEEIHLSKNKIEGRLESIIHYSPYLMTLDLSYN 698 (1021)
Q Consensus 620 ~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~-~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~N 698 (1021)
..+.+..|.+... ...+..++.++.|++.+|.++...|...... +|+.|++++|++... |..+..+++|+.|++++|
T Consensus 96 ~~l~~~~~~~~~~-~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l-~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 96 PSLDLNLNRLRSN-ISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESL-PSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred ceeeccccccccC-chhhhcccceeEEecCCcccccCccccccchhhcccccccccchhhh-hhhhhccccccccccCCc
Confidence 3566666665322 2234444667777777777664444333332 555555555555522 233445555555555555
Q ss_pred ccCCCCCccccCCCCCcEEEcccccccccCCccccCCCCCCEEeccCC
Q 001719 699 CLHGSIPTWIDRLPQLSYLLLANNYIEGEIPIQICQLKEVRLIDLSHN 746 (1021)
Q Consensus 699 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N 746 (1021)
++. .+|...+..++|+.|++++|+++ .+|........|+.+.+++|
T Consensus 174 ~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N 219 (394)
T COG4886 174 DLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNN 219 (394)
T ss_pred hhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCC
Confidence 554 33333334445555555555554 33433333333444444444
No 28
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.12 E-value=9.3e-11 Score=134.05 Aligned_cols=200 Identities=30% Similarity=0.449 Sum_probs=143.4
Q ss_pred CEEEccCCccccCCCCCCCCCcccEEEccCCccccccchhhhcCc-cccEEEccCCccCCCCCccccCCCCCcEEEcccc
Q 001719 644 KILDLSNNTIFGTLPSCFSPAYIEEIHLSKNKIEGRLESIIHYSP-YLMTLDLSYNCLHGSIPTWIDRLPQLSYLLLANN 722 (1021)
Q Consensus 644 ~~L~Ls~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~-~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N 722 (1021)
..++++.|.+...+......+.++.|++.+|.++...+ ...... +|+.|++++|++. .+|..++.+++|+.|++++|
T Consensus 96 ~~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~-~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 96 PSLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPP-LIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred ceeeccccccccCchhhhcccceeEEecCCcccccCcc-ccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence 45777777775555555555678888888888875433 444453 7888888888887 55566778888888888888
Q ss_pred cccccCCccccCCCCCCEEeccCCcCcccCCcccccccccccccccccccCCCCCCCcccccCCCCCCCCCCCCcceEEE
Q 001719 723 YIEGEIPIQICQLKEVRLIDLSHNNLSGHIPPCLVNTALNEGYHEAVAPISSSSDDASTYVLPSVAPNGSPIGEEETVQF 802 (1021)
Q Consensus 723 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 802 (1021)
+++ .+|...+..+.|+.|++++|+++ .+|.....
T Consensus 174 ~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~-------------------------------------------- 207 (394)
T COG4886 174 DLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIEL-------------------------------------------- 207 (394)
T ss_pred hhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhh--------------------------------------------
Confidence 887 56666667788888888888886 45543211
Q ss_pred eecCccccccccccccccEEEcccceecCcCcccccCCCCCCEEEcCCCcCccchhhcccCCCCCCEEeCcCccCCCCCC
Q 001719 803 TTKNMSYYYQGRILMSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLLGKIP 882 (1021)
Q Consensus 803 ~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~g~ip 882 (1021)
...|+++++++|.+. .++..+..++.+..|.+++|++. .++..++.++++++|++++|+++ .++
T Consensus 208 -------------~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~-~i~ 271 (394)
T COG4886 208 -------------LSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQIS-SIS 271 (394)
T ss_pred -------------hhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhccccccceecccccccc-ccc
Confidence 124667778888544 56667777888888888888877 33667778888888888888887 444
Q ss_pred cccccCCCCCEEEccCCcceecCCCc
Q 001719 883 PQLIVLNTLAVFRVANNNLSGKIPDR 908 (1021)
Q Consensus 883 ~~l~~l~~L~~L~ls~N~l~g~ip~~ 908 (1021)
. +..+.+++.|++++|.++...|..
T Consensus 272 ~-~~~~~~l~~L~~s~n~~~~~~~~~ 296 (394)
T COG4886 272 S-LGSLTNLRELDLSGNSLSNALPLI 296 (394)
T ss_pred c-ccccCccCEEeccCccccccchhh
Confidence 4 778888888888888887766654
No 29
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.06 E-value=1e-10 Score=113.52 Aligned_cols=127 Identities=35% Similarity=0.473 Sum_probs=52.0
Q ss_pred CCCCCCEEeCCCCCCCCccccchhhhcc-CCCCCCEEeCCCCCCCCcccccCCCCCCCCEEEcCCcccccccChhcc-CC
Q 001719 105 PFQQLESLDLSWNNIAGCVENEGVERLS-RLNNLKFLLLDSNYFNNSIFSSLGGLSSLRILSLADNRLNGSIDIKGL-DS 182 (1021)
Q Consensus 105 ~l~~L~~LdLs~n~i~~~~~~~~~~~l~-~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~l-~~ 182 (1021)
+...+++|+|++|.|+.+.. ++ .+.+|++|+|++|.++. .+.+..+++|++|++++|.++ .++. .+ ..
T Consensus 17 n~~~~~~L~L~~n~I~~Ie~------L~~~l~~L~~L~Ls~N~I~~--l~~l~~L~~L~~L~L~~N~I~-~i~~-~l~~~ 86 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTIEN------LGATLDKLEVLDLSNNQITK--LEGLPGLPRLKTLDLSNNRIS-SISE-GLDKN 86 (175)
T ss_dssp -------------------S--------TT-TT--EEE-TTS--S----TT----TT--EEE--SS----S-CH-HHHHH
T ss_pred cccccccccccccccccccc------hhhhhcCCCEEECCCCCCcc--ccCccChhhhhhcccCCCCCC-cccc-chHHh
Confidence 44567889999998876533 55 57889999999998875 346788899999999999987 6654 34 46
Q ss_pred CCCCCEEeCCCCCCCCCCCcccccccCCCCCCCEEECCCCCCCCcc---chhccCCCCCCEEEcC
Q 001719 183 LSNLEELDMSYNAIDNLVVPQGLERLSTLSNLKFLRLDYNSFNSSI---FSSLGGLSSLRILSLA 244 (1021)
Q Consensus 183 l~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~---~~~l~~l~~L~~L~L~ 244 (1021)
+++|++|++++|+|.... .+..++.+++|++|++.+|.++... ...+..+|+|+.||-.
T Consensus 87 lp~L~~L~L~~N~I~~l~---~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 87 LPNLQELYLSNNKISDLN---ELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp -TT--EEE-TTS---SCC---CCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred CCcCCEEECcCCcCCChH---HhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 889999999999887753 3447788889999999998887432 2346778888888743
No 30
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=3.7e-11 Score=126.63 Aligned_cols=113 Identities=27% Similarity=0.293 Sum_probs=72.6
Q ss_pred cCCCCCCEEeCCCCCCCCccc-ccCCCCCCCCEEEcCCcccccccCh-hccCCCCCCCEEeCCCCCCCCCCCcccccccC
Q 001719 132 SRLNNLKFLLLDSNYFNNSIF-SSLGGLSSLRILSLADNRLNGSIDI-KGLDSLSNLEELDMSYNAIDNLVVPQGLERLS 209 (1021)
Q Consensus 132 ~~l~~L~~L~Ls~n~~~~~~~-~~l~~l~~L~~L~Ls~n~l~~~i~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~ 209 (1021)
++++.||...|.++.+..... +....|++++.||||+|-+..--+. .....+++|+.|+|+.|++....... .-.
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~---~~~ 194 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSN---TTL 194 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCcccc---chh
Confidence 567777887777776643221 3456778888888888776521111 13456788888888888776433211 122
Q ss_pred CCCCCCEEECCCCCCCCc-cchhccCCCCCCEEEcCCcc
Q 001719 210 TLSNLKFLRLDYNSFNSS-IFSSLGGLSSLRILSLADNR 247 (1021)
Q Consensus 210 ~l~~L~~L~L~~n~i~~~-~~~~l~~l~~L~~L~L~~n~ 247 (1021)
.+++|+.|.++.|.++.. +...+..+|+|+.|+|..|.
T Consensus 195 ~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~ 233 (505)
T KOG3207|consen 195 LLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANE 233 (505)
T ss_pred hhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhccc
Confidence 567788888888887743 23345667888888888874
No 31
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.99 E-value=1.6e-10 Score=112.14 Aligned_cols=111 Identities=32% Similarity=0.471 Sum_probs=44.6
Q ss_pred hccCCCCCCEEeCCCCCCCCcccccCC-CCCCCCEEEcCCcccccccChhccCCCCCCCEEeCCCCCCCCCCCccccccc
Q 001719 130 RLSRLNNLKFLLLDSNYFNNSIFSSLG-GLSSLRILSLADNRLNGSIDIKGLDSLSNLEELDMSYNAIDNLVVPQGLERL 208 (1021)
Q Consensus 130 ~l~~l~~L~~L~Ls~n~~~~~~~~~l~-~l~~L~~L~Ls~n~l~~~i~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l 208 (1021)
.+.+...+++|+|++|.|+. .+.++ .+.+|++|+|++|.+. .++ .+..+++|++|++++|+|+...+ .+
T Consensus 14 ~~~n~~~~~~L~L~~n~I~~--Ie~L~~~l~~L~~L~Ls~N~I~-~l~--~l~~L~~L~~L~L~~N~I~~i~~-----~l 83 (175)
T PF14580_consen 14 QYNNPVKLRELNLRGNQIST--IENLGATLDKLEVLDLSNNQIT-KLE--GLPGLPRLKTLDLSNNRISSISE-----GL 83 (175)
T ss_dssp ------------------------S--TT-TT--EEE-TTS--S---T--T----TT--EEE--SS---S-CH-----HH
T ss_pred cccccccccccccccccccc--ccchhhhhcCCCEEECCCCCCc-ccc--CccChhhhhhcccCCCCCCcccc-----ch
Confidence 36677789999999999975 34676 5899999999999998 666 68899999999999999997643 33
Q ss_pred -CCCCCCCEEECCCCCCCCc-cchhccCCCCCCEEEcCCccCcc
Q 001719 209 -STLSNLKFLRLDYNSFNSS-IFSSLGGLSSLRILSLADNRFNG 250 (1021)
Q Consensus 209 -~~l~~L~~L~L~~n~i~~~-~~~~l~~l~~L~~L~L~~n~l~~ 250 (1021)
..+++|++|++++|+|... ....+..+++|++|++.+|++..
T Consensus 84 ~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~ 127 (175)
T PF14580_consen 84 DKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCE 127 (175)
T ss_dssp HHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGG
T ss_pred HHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccc
Confidence 3689999999999999863 34678899999999999998764
No 32
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.96 E-value=1.2e-10 Score=116.27 Aligned_cols=85 Identities=27% Similarity=0.280 Sum_probs=57.6
Q ss_pred ccccEEEcccceecCcCcccccCCCCCCEEEcCCCcCccchhhcccCCCCCCEEeCcCccCCCC-CCcccccCCCCCEEE
Q 001719 817 MSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLLGK-IPPQLIVLNTLAVFR 895 (1021)
Q Consensus 817 ~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~g~-ip~~l~~l~~L~~L~ 895 (1021)
++|+.||||+|.++ .+-.+-..+-+.+.|+|+.|.|... +.+++|-+|..||+++|+|... --..+++++.|+.+.
T Consensus 329 ~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~ 405 (490)
T KOG1259|consen 329 PQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLR 405 (490)
T ss_pred ccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHh
Confidence 35666777777666 4444444566677788888877632 4567777788888888887632 224677888888888
Q ss_pred ccCCcceec
Q 001719 896 VANNNLSGK 904 (1021)
Q Consensus 896 ls~N~l~g~ 904 (1021)
+.+|.+.+.
T Consensus 406 L~~NPl~~~ 414 (490)
T KOG1259|consen 406 LTGNPLAGS 414 (490)
T ss_pred hcCCCcccc
Confidence 888888754
No 33
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.95 E-value=1.6e-11 Score=125.94 Aligned_cols=47 Identities=28% Similarity=0.243 Sum_probs=25.0
Q ss_pred ccCCCCCCCEEeCCCCCCCCCCCcccccccCCCCCCCEEECCCCCCC
Q 001719 179 GLDSLSNLEELDMSYNAIDNLVVPQGLERLSTLSNLKFLRLDYNSFN 225 (1021)
Q Consensus 179 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~L~~n~i~ 225 (1021)
.+..+++|++||||.|-+....+.....-++++..|++|.|.+|.+.
T Consensus 87 aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg 133 (382)
T KOG1909|consen 87 ALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLG 133 (382)
T ss_pred HHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCC
Confidence 34455566666666666544333222223445666666666666554
No 34
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.92 E-value=2.3e-10 Score=114.35 Aligned_cols=21 Identities=43% Similarity=0.618 Sum_probs=14.9
Q ss_pred cccCCCCCCCEEEccCccccc
Q 001719 334 QSIGSLPSLKTLYLLFTNFKG 354 (1021)
Q Consensus 334 ~~l~~l~~L~~L~L~~n~~~~ 354 (1021)
..++++|.|+++.+.+|.+.+
T Consensus 393 ~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 393 NHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred cccccccHHHHHhhcCCCccc
Confidence 567777777777777776654
No 35
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.92 E-value=1.6e-10 Score=118.73 Aligned_cols=167 Identities=23% Similarity=0.216 Sum_probs=77.2
Q ss_pred cEEEEecCCccccccccccCccCcccccCCCCCCEEeCCCCCCCCccccch-------hhhccCCCCCCEEeCCCCCCCC
Q 001719 77 RVIKLDLGDIKNRKNRKSERHLNASLFTPFQQLESLDLSWNNIAGCVENEG-------VERLSRLNNLKFLLLDSNYFNN 149 (1021)
Q Consensus 77 ~v~~l~l~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~n~i~~~~~~~~-------~~~l~~l~~L~~L~Ls~n~~~~ 149 (1021)
.+++|+|+|+.+. ..-...-...+.+-+.|+..++|+- ++|.+..+. .+++...++|++||||+|.+..
T Consensus 31 s~~~l~lsgnt~G---~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~ 106 (382)
T KOG1909|consen 31 SLTKLDLSGNTFG---TEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGP 106 (382)
T ss_pred ceEEEeccCCchh---HHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCc
Confidence 4666777665431 0000111223445556666666653 233322211 1344555666666666666643
Q ss_pred ccccc----CCCCCCCCEEEcCCcccccccCh-------------hccCCCCCCCEEeCCCCCCCCCCCcccccccCCCC
Q 001719 150 SIFSS----LGGLSSLRILSLADNRLNGSIDI-------------KGLDSLSNLEELDMSYNAIDNLVVPQGLERLSTLS 212 (1021)
Q Consensus 150 ~~~~~----l~~l~~L~~L~Ls~n~l~~~i~~-------------~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~ 212 (1021)
..++. +..++.|++|.|.+|.+. .... ..+++-++|+++...+|++...........+...+
T Consensus 107 ~g~~~l~~ll~s~~~L~eL~L~N~Glg-~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~ 185 (382)
T KOG1909|consen 107 KGIRGLEELLSSCTDLEELYLNNCGLG-PEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHP 185 (382)
T ss_pred cchHHHHHHHHhccCHHHHhhhcCCCC-hhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhcc
Confidence 33322 345666666666666553 1111 11233344555555555554433222223344445
Q ss_pred CCCEEECCCCCCCCc----cchhccCCCCCCEEEcCCccC
Q 001719 213 NLKFLRLDYNSFNSS----IFSSLGGLSSLRILSLADNRF 248 (1021)
Q Consensus 213 ~L~~L~L~~n~i~~~----~~~~l~~l~~L~~L~L~~n~l 248 (1021)
.|+.+.++.|.|... ...++..+++|+.|||.+|.+
T Consensus 186 ~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtf 225 (382)
T KOG1909|consen 186 TLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTF 225 (382)
T ss_pred ccceEEEecccccCchhHHHHHHHHhCCcceeeecccchh
Confidence 555555555544322 123344455555555555544
No 36
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.91 E-value=4e-10 Score=118.95 Aligned_cols=196 Identities=23% Similarity=0.210 Sum_probs=94.8
Q ss_pred hcCCCCceEEecccccccccch-hhhccCCcccEEEccCccccccccCCCCCCcchhhcCCCCcCEEEecCCccccCCCh
Q 001719 362 HNFTNLEELLLVKSDLHVSQLL-QSIASFTSLKYLSIRGCVLKGALHGQDGGTFPKFLYHQHDLKNVDLSHLNLSGKFPN 440 (1021)
Q Consensus 362 ~~l~~L~~L~L~~n~~~~~~~~-~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~ 440 (1021)
..|++++.|+|+.|-+....+. .....+|+|+.|+++.|.+......... ..++.|+.|.++.|.++-.--.
T Consensus 143 k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~-------~~l~~lK~L~l~~CGls~k~V~ 215 (505)
T KOG3207|consen 143 KILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTT-------LLLSHLKQLVLNSCGLSWKDVQ 215 (505)
T ss_pred hhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccch-------hhhhhhheEEeccCCCCHHHHH
Confidence 3445555555555544332222 1233456666666666655422222111 1345667777777776644344
Q ss_pred hHhhcCCCCCEEECcCCcCCCCCccCccCCCCcCEEEcCCCCCCcccch-hhhhcCCCCCEEECCCCcCCCCCCccccCC
Q 001719 441 WLVENNTNLKTLLLANNSLFGSFRMPIHSHQKLATLDVSTNFFRGHIPV-EIGTYLSGLMDLNLSRNAFNGSIPSSFADM 519 (1021)
Q Consensus 441 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ip~-~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l 519 (1021)
++...+|+|+.|+|..|...........-+..|++|||++|++. ..+. .....++.|+.|+++.|.+...--....
T Consensus 216 ~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~-- 292 (505)
T KOG3207|consen 216 WILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVE-- 292 (505)
T ss_pred HHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc-ccccccccccccchhhhhccccCcchhcCCCcc--
Confidence 45566777887777777543333344444555666666666554 2221 1111245555555555555422111110
Q ss_pred CCCCEEEcCCCcCCCccchhhhhcCCCCcEEECCCCccccc-ccccccCCCCccEEEccCCccccc
Q 001719 520 KMLKSLDISYNQLTGEIPDRMAIGCFSLEILALSNNNLQGH-IFSKKFNLTNLMRLQLDGNKFIGE 584 (1021)
Q Consensus 520 ~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~ 584 (1021)
. .+.....++|++|++..|++... .-..+..+++|+.|.+..|.+..+
T Consensus 293 ----s-------------~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~e 341 (505)
T KOG3207|consen 293 ----S-------------LDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNKE 341 (505)
T ss_pred ----c-------------hhhhcccccceeeecccCccccccccchhhccchhhhhhccccccccc
Confidence 0 00011344555555555555321 112334456677777777776543
No 37
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.87 E-value=1.6e-09 Score=131.57 Aligned_cols=129 Identities=28% Similarity=0.299 Sum_probs=83.9
Q ss_pred CCCCEEeCCCCCCCCccccchhhhccCCCCCCEEeCCCCC--CCCcccccCCCCCCCCEEEcCCcccccccChhccCCCC
Q 001719 107 QQLESLDLSWNNIAGCVENEGVERLSRLNNLKFLLLDSNY--FNNSIFSSLGGLSSLRILSLADNRLNGSIDIKGLDSLS 184 (1021)
Q Consensus 107 ~~L~~LdLs~n~i~~~~~~~~~~~l~~l~~L~~L~Ls~n~--~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~l~~l~ 184 (1021)
...|.+.+-+|.+..... =.+.+.|++|-+..|. +.......|..++.|++|||++|.-.+.+|. .+++|.
T Consensus 523 ~~~rr~s~~~~~~~~~~~------~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~-~I~~Li 595 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIEHIAG------SSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPS-SIGELV 595 (889)
T ss_pred hheeEEEEeccchhhccC------CCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCCh-HHhhhh
Confidence 445666666665544332 1233467777777764 3333344467777777777777665556775 777777
Q ss_pred CCCEEeCCCCCCCCCCCcccccccCCCCCCCEEECCCCCCCCccchhccCCCCCCEEEcCCcc
Q 001719 185 NLEELDMSYNAIDNLVVPQGLERLSTLSNLKFLRLDYNSFNSSIFSSLGGLSSLRILSLADNR 247 (1021)
Q Consensus 185 ~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~ 247 (1021)
+||+|+|++..+..++. .++++..|.+|++..+......+.....+++|++|.+....
T Consensus 596 ~LryL~L~~t~I~~LP~-----~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 596 HLRYLDLSDTGISHLPS-----GLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred hhhcccccCCCccccch-----HHHHHHhhheeccccccccccccchhhhcccccEEEeeccc
Confidence 77777777777775544 67777777777777776555556666667888888776543
No 38
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.86 E-value=1.8e-09 Score=131.30 Aligned_cols=254 Identities=24% Similarity=0.298 Sum_probs=155.2
Q ss_pred CCCCCEEeCCCCC--CCCccccchhhhccCCCCCCEEeCCCCCCCCcccccCCCCCCCCEEEcCCcccccccChhccCCC
Q 001719 106 FQQLESLDLSWNN--IAGCVENEGVERLSRLNNLKFLLLDSNYFNNSIFSSLGGLSSLRILSLADNRLNGSIDIKGLDSL 183 (1021)
Q Consensus 106 l~~L~~LdLs~n~--i~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~l~~l 183 (1021)
.+.|++|=+.+|. +..... +.|..++.|++|||++|.-.+.+|..+++|.+||+|+++++.+. .+|. .+++|
T Consensus 544 ~~~L~tLll~~n~~~l~~is~----~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~-~l~~L 617 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSDWLLEISG----EFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPS-GLGNL 617 (889)
T ss_pred CCccceEEEeecchhhhhcCH----HHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccch-HHHHH
Confidence 3468888888775 333333 45888999999999998877889999999999999999999998 8897 99999
Q ss_pred CCCCEEeCCCCCCCCCCCcccccccCCCCCCCEEECCCCCCC--CccchhccCCCCCCEEEcCCccCcccccccCccccc
Q 001719 184 SNLEELDMSYNAIDNLVVPQGLERLSTLSNLKFLRLDYNSFN--SSIFSSLGGLSSLRILSLADNRFNGSIDIKGKQASS 261 (1021)
Q Consensus 184 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~L~~n~i~--~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~~ 261 (1021)
.+|.+||+..+.-...++. ....+++|++|.+...... ......+.++.+|+.+........ +- .....
T Consensus 618 k~L~~Lnl~~~~~l~~~~~----i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~--~~---e~l~~ 688 (889)
T KOG4658|consen 618 KKLIYLNLEVTGRLESIPG----ILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSVL--LL---EDLLG 688 (889)
T ss_pred Hhhheeccccccccccccc----hhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchhH--hH---hhhhh
Confidence 9999999998865544431 4455899999998776522 233344556666666655433210 00 00111
Q ss_pred cccCCcccceeecCCC-cCCCCCCCCCCCCCCeeeCCCCCCCCCcCChhh-----h-hhccccccccCCcccccCccccc
Q 001719 262 ILRVPSFVDLVSLSSW-SVGINTGLDSLSNLEELDMTNNAINNLVVPKDY-----R-CLRKLNTLYLGGIAMIDGSKVLQ 334 (1021)
Q Consensus 262 ~~~~~~~l~~l~l~~~-~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~l-----~-~l~~L~~L~l~~~~~~~~~~~~~ 334 (1021)
.....+..+.+.+..+ .......+..+.+|+.|.+.++.+..+.+ ... . .++++..+.+..+...... .
T Consensus 689 ~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~-~~~~~~~~~~~f~~l~~~~~~~~~~~r~l---~ 764 (889)
T KOG4658|consen 689 MTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVI-EWEESLIVLLCFPNLSKVSILNCHMLRDL---T 764 (889)
T ss_pred hHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhc-ccccccchhhhHHHHHHHHhhcccccccc---c
Confidence 1111222222222222 23334467788899999998888764221 111 1 1334444444444332221 2
Q ss_pred ccCCCCCCCEEEccCcccccccCchhhhcCCCCceEEeccccccc
Q 001719 335 SIGSLPSLKTLYLLFTNFKGTIVNQELHNFTNLEELLLVKSDLHV 379 (1021)
Q Consensus 335 ~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~L~~n~~~~ 379 (1021)
.....++|+.|.+..+.....+ ......+..++++.+..+.+.+
T Consensus 765 ~~~f~~~L~~l~l~~~~~~e~~-i~~~k~~~~l~~~i~~f~~~~~ 808 (889)
T KOG4658|consen 765 WLLFAPHLTSLSLVSCRLLEDI-IPKLKALLELKELILPFNKLEG 808 (889)
T ss_pred hhhccCcccEEEEecccccccC-CCHHHHhhhcccEEeccccccc
Confidence 2334578888888877766655 3444555555554454444443
No 39
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.76 E-value=7e-09 Score=75.27 Aligned_cols=40 Identities=38% Similarity=0.723 Sum_probs=29.8
Q ss_pred hHHHHHHHHHhhhhCCC-C-cccCCcccccCCCC-CCCceeeceeEec
Q 001719 28 LEQERSALLQLKHFFND-D-QRLQNWVDAADDEN-YSDCCQWERVECN 72 (1021)
Q Consensus 28 ~~~~~~~ll~~k~~~~~-~-~~l~~w~~~~~~~~-~~~~c~w~gv~c~ 72 (1021)
+++|++||++||+++.. + ..+.+|.. + ..+||.|.||+|+
T Consensus 1 ~~~d~~aLl~~k~~l~~~~~~~l~~W~~-----~~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 1 PNQDRQALLAFKKSLNNDPSGVLSSWNP-----SSDSDPCSWSGVTCD 43 (43)
T ss_dssp -HHHHHHHHHHHHCTT-SC-CCCTT--T-----T--S-CCCSTTEEE-
T ss_pred CcHHHHHHHHHHHhcccccCcccccCCC-----cCCCCCeeeccEEeC
Confidence 36899999999999984 5 68999986 2 2799999999996
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.71 E-value=7.8e-09 Score=82.37 Aligned_cols=59 Identities=44% Similarity=0.596 Sum_probs=28.9
Q ss_pred cccEEEcccceecCcCcccccCCCCCCEEEcCCCcCccchhhcccCCCCCCEEeCcCcc
Q 001719 818 SMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNL 876 (1021)
Q Consensus 818 ~L~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~ 876 (1021)
+|+.|++++|+++...+..|..+++|++|++++|+++...|..|.++++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 34455555555553333344455555555555555554444455555555555555554
No 41
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.69 E-value=1.1e-08 Score=81.49 Aligned_cols=61 Identities=41% Similarity=0.562 Sum_probs=57.2
Q ss_pred CCCCEEEcCCCcCccchhhcccCCCCCCEEeCcCccCCCCCCcccccCCCCCEEEccCCcc
Q 001719 841 TRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLLGKIPPQLIVLNTLAVFRVANNNL 901 (1021)
Q Consensus 841 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l 901 (1021)
++|++|++++|+|+...++.|.++++|++||+++|+++...|..|..+++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4689999999999987778999999999999999999988888999999999999999985
No 42
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.62 E-value=6.1e-09 Score=119.07 Aligned_cols=129 Identities=34% Similarity=0.467 Sum_probs=91.5
Q ss_pred CCCCCCEEeCCCCCCCCccccchhhhccCCCCCCEEeCCCCCCCCcccccCCCCCCCCEEEcCCcccccccChhccCCCC
Q 001719 105 PFQQLESLDLSWNNIAGCVENEGVERLSRLNNLKFLLLDSNYFNNSIFSSLGGLSSLRILSLADNRLNGSIDIKGLDSLS 184 (1021)
Q Consensus 105 ~l~~L~~LdLs~n~i~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~l~~l~ 184 (1021)
.+..+..+++..|.|+... ..+..+++|..|++.+|.+.. +...+..+++|++|++++|.|+ .+. .+..++
T Consensus 70 ~l~~l~~l~l~~n~i~~~~-----~~l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~-~i~--~l~~l~ 140 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAKIL-----NHLSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKIT-KLE--GLSTLT 140 (414)
T ss_pred HhHhHHhhccchhhhhhhh-----cccccccceeeeeccccchhh-cccchhhhhcchheeccccccc-ccc--chhhcc
Confidence 4566666677777776522 247778888888888888764 2222677888888888888887 554 577777
Q ss_pred CCCEEeCCCCCCCCCCCcccccccCCCCCCCEEECCCCCCCCccc-hhccCCCCCCEEEcCCccCc
Q 001719 185 NLEELDMSYNAIDNLVVPQGLERLSTLSNLKFLRLDYNSFNSSIF-SSLGGLSSLRILSLADNRFN 249 (1021)
Q Consensus 185 ~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~-~~l~~l~~L~~L~L~~n~l~ 249 (1021)
.|+.|++++|.|+... .+..++.|+.+++++|.+....+ . +..+.+++.+.+.+|.+.
T Consensus 141 ~L~~L~l~~N~i~~~~------~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 141 LLKELNLSGNLISDIS------GLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIR 199 (414)
T ss_pred chhhheeccCcchhcc------CCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchh
Confidence 7888888888887653 45667888888888888776544 2 577777888888887754
No 43
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.54 E-value=2.1e-08 Score=114.74 Aligned_cols=133 Identities=38% Similarity=0.456 Sum_probs=105.5
Q ss_pred cccCCCCCCEEeCCCCCCCCccccchhhhccCCCCCCEEeCCCCCCCCcccccCCCCCCCCEEEcCCcccccccChhccC
Q 001719 102 LFTPFQQLESLDLSWNNIAGCVENEGVERLSRLNNLKFLLLDSNYFNNSIFSSLGGLSSLRILSLADNRLNGSIDIKGLD 181 (1021)
Q Consensus 102 ~~~~l~~L~~LdLs~n~i~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~l~ 181 (1021)
.+..+++|++|++.+|.|.++.. .+..+.+|++|++++|.|+. ...+..+..|+.|++++|.+. .+. .+.
T Consensus 90 ~l~~~~~l~~l~l~~n~i~~i~~-----~l~~~~~L~~L~ls~N~I~~--i~~l~~l~~L~~L~l~~N~i~-~~~--~~~ 159 (414)
T KOG0531|consen 90 HLSKLKSLEALDLYDNKIEKIEN-----LLSSLVNLQVLDLSFNKITK--LEGLSTLTLLKELNLSGNLIS-DIS--GLE 159 (414)
T ss_pred ccccccceeeeeccccchhhccc-----chhhhhcchheecccccccc--ccchhhccchhhheeccCcch-hcc--CCc
Confidence 35778999999999999987654 27789999999999999976 445778888999999999998 555 677
Q ss_pred CCCCCCEEeCCCCCCCCCCCcccccccCCCCCCCEEECCCCCCCCccchhccCCCCCCEEEcCCccCcc
Q 001719 182 SLSNLEELDMSYNAIDNLVVPQGLERLSTLSNLKFLRLDYNSFNSSIFSSLGGLSSLRILSLADNRFNG 250 (1021)
Q Consensus 182 ~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~ 250 (1021)
.+.+|+.+++++|++..+.+. . ...+.+++.+++.+|.+... ..+..+..+..+++..|.++.
T Consensus 160 ~l~~L~~l~l~~n~i~~ie~~---~-~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~i~~ 222 (414)
T KOG0531|consen 160 SLKSLKLLDLSYNRIVDIEND---E-LSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNKISK 222 (414)
T ss_pred cchhhhcccCCcchhhhhhhh---h-hhhccchHHHhccCCchhcc--cchHHHHHHHHhhccccccee
Confidence 799999999999999876431 0 47889999999999988754 334445555555777777653
No 44
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.45 E-value=3.8e-09 Score=105.94 Aligned_cols=162 Identities=24% Similarity=0.200 Sum_probs=85.1
Q ss_pred CCCEEeCCCCCCCCCCCcccccccCCCCCCCEEECCCCCCCCccchhccCCCCCCEEEcCCccCcccccccCcccccccc
Q 001719 185 NLEELDMSYNAIDNLVVPQGLERLSTLSNLKFLRLDYNSFNSSIFSSLGGLSSLRILSLADNRFNGSIDIKGKQASSILR 264 (1021)
Q Consensus 185 ~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~~~~~ 264 (1021)
.||+||||...|+.... ..-++.|++|+.|.+.++++.+.+...+++-.+|+.|+++.+. |.....
T Consensus 186 Rlq~lDLS~s~it~stl---~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~s--G~t~n~--------- 251 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTL---HGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCS--GFTENA--------- 251 (419)
T ss_pred hhHHhhcchhheeHHHH---HHHHHHHHhhhhccccccccCcHHHHHHhccccceeecccccc--ccchhH---------
Confidence 47777777776654322 1245667777888888887777777777777778888877764 211000
Q ss_pred CCcccceeecCCCcCCCCCCCCCCCCCCeeeCCCCCCCCCcCChhhhh-hccccccccCCcccccCc-ccccccCCCCCC
Q 001719 265 VPSFVDLVSLSSWSVGINTGLDSLSNLEELDMTNNAINNLVVPKDYRC-LRKLNTLYLGGIAMIDGS-KVLQSIGSLPSL 342 (1021)
Q Consensus 265 ~~~~l~~l~l~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~l~~-l~~L~~L~l~~~~~~~~~-~~~~~l~~l~~L 342 (1021)
...-+.+|+.|.+|++++|.+..-.+-..... -++|..|+++|+...-.. .+..-...+|+|
T Consensus 252 ----------------~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l 315 (419)
T KOG2120|consen 252 ----------------LQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNL 315 (419)
T ss_pred ----------------HHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCce
Confidence 00025677778888888876654111111111 145555666655432111 111112345555
Q ss_pred CEEEccCcccccccCchhhhcCCCCceEEecccc
Q 001719 343 KTLYLLFTNFKGTIVNQELHNFTNLEELLLVKSD 376 (1021)
Q Consensus 343 ~~L~L~~n~~~~~~~~~~l~~l~~L~~L~L~~n~ 376 (1021)
.+||+++|.....-....+.+++.|++|.++.|.
T Consensus 316 ~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY 349 (419)
T KOG2120|consen 316 VHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCY 349 (419)
T ss_pred eeeccccccccCchHHHHHHhcchheeeehhhhc
Confidence 5555555432221113334445555555554443
No 45
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.38 E-value=9.5e-08 Score=96.07 Aligned_cols=66 Identities=15% Similarity=0.235 Sum_probs=43.6
Q ss_pred CCCCCEEEccCcccccccCchhhhcCCCCceEEecccccccccchhhhccCCcccEEEccCccccc
Q 001719 339 LPSLKTLYLLFTNFKGTIVNQELHNFTNLEELLLVKSDLHVSQLLQSIASFTSLKYLSIRGCVLKG 404 (1021)
Q Consensus 339 l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~l~~~~l~~ 404 (1021)
+|++..+.+..|.+...........++.+.-|.|+.+++......+++..+++|..|.++.+++..
T Consensus 198 Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d 263 (418)
T KOG2982|consen 198 FPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSD 263 (418)
T ss_pred cccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence 566666777666655433233445566666777777777766666777777888777777776653
No 46
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.35 E-value=8.9e-09 Score=114.99 Aligned_cols=183 Identities=27% Similarity=0.363 Sum_probs=110.4
Q ss_pred cccccCCCCCCEEeCCCCCCCCccccchhhhccCC-CCCCEEeCCCCC--CCCcccccCCC------CCCCCEEEcCCcc
Q 001719 100 ASLFTPFQQLESLDLSWNNIAGCVENEGVERLSRL-NNLKFLLLDSNY--FNNSIFSSLGG------LSSLRILSLADNR 170 (1021)
Q Consensus 100 ~~~~~~l~~L~~LdLs~n~i~~~~~~~~~~~l~~l-~~L~~L~Ls~n~--~~~~~~~~l~~------l~~L~~L~Ls~n~ 170 (1021)
|-.+..|+.||+|.|.++.+..... +..+ ..|++|..++.- +...+....+. ...|.+.+.++|.
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~~~G------L~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~ 175 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLSTAKG------LQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNR 175 (1096)
T ss_pred CceeccccceeeEEecCcchhhhhh------hHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhh
Confidence 3345678999999999998865222 1111 123333222110 00011111111 2356677777777
Q ss_pred cccccChhccCCCCCCCEEeCCCCCCCCCCCcccccccCCCCCCCEEECCCCCCCCccchhccCCCCCCEEEcCCccCcc
Q 001719 171 LNGSIDIKGLDSLSNLEELDMSYNAIDNLVVPQGLERLSTLSNLKFLRLDYNSFNSSIFSSLGGLSSLRILSLADNRFNG 250 (1021)
Q Consensus 171 l~~~i~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~ 250 (1021)
+. .+.. .+.-++.|++|||++|+++... .+..|++|++|||++|.+....--....+. |+.|++++|.++.
T Consensus 176 L~-~mD~-SLqll~ale~LnLshNk~~~v~------~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~t 246 (1096)
T KOG1859|consen 176 LV-LMDE-SLQLLPALESLNLSHNKFTKVD------NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTT 246 (1096)
T ss_pred HH-hHHH-HHHHHHHhhhhccchhhhhhhH------HHHhcccccccccccchhccccccchhhhh-heeeeecccHHHh
Confidence 75 4443 6666777788888888776542 566777777888877777654322333444 7777777776542
Q ss_pred cccccCccccccccCCcccceeecCCCcCCCCCCCCCCCCCCeeeCCCCCCCCCcCChhhhhhccccccccCCccccc
Q 001719 251 SIDIKGKQASSILRVPSFVDLVSLSSWSVGINTGLDSLSNLEELDMTNNAINNLVVPKDYRCLRKLNTLYLGGIAMID 328 (1021)
Q Consensus 251 ~~p~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~l~~~~~~~ 328 (1021)
..++.++++|+.||+++|-+.+..--..+..+..|+.|++.||+...
T Consensus 247 -------------------------------L~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c 293 (1096)
T KOG1859|consen 247 -------------------------------LRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCC 293 (1096)
T ss_pred -------------------------------hhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcccc
Confidence 12567788888888888877664434556677888888888887643
No 47
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.28 E-value=5.8e-08 Score=97.60 Aligned_cols=183 Identities=21% Similarity=0.209 Sum_probs=110.9
Q ss_pred CCCCeeeCCCCCCCCCcCChhhhhhccccccccCCcccccCcccccccCCCCCCCEEEccCcc-cccccCchhhhcCCCC
Q 001719 289 SNLEELDMTNNAINNLVVPKDYRCLRKLNTLYLGGIAMIDGSKVLQSIGSLPSLKTLYLLFTN-FKGTIVNQELHNFTNL 367 (1021)
Q Consensus 289 ~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~-~~~~~~~~~l~~l~~L 367 (1021)
++|+.+||+...++...+-.-+..+++|+.|.++|++..+. +...++.-.+|+.|+++.++ ++.......+.+|+.|
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~--I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L 262 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDP--IVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRL 262 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcH--HHHHHhccccceeeccccccccchhHHHHHHHhhhhH
Confidence 46888999888776544455677888888888888776542 22567778888888888764 4332223346788889
Q ss_pred ceEEecccccccccchhhhcc-CCcccEEEccCccccccccCCCCCCcchhhcCCCCcCEEEecCCccc-cCCChhHhhc
Q 001719 368 EELLLVKSDLHVSQLLQSIAS-FTSLKYLSIRGCVLKGALHGQDGGTFPKFLYHQHDLKNVDLSHLNLS-GKFPNWLVEN 445 (1021)
Q Consensus 368 ~~L~L~~n~~~~~~~~~~l~~-l~~L~~L~l~~~~l~~~~~~~~~~~~p~~l~~l~~L~~L~Ls~n~l~-~~~p~~~~~~ 445 (1021)
.+|+++.|.+..+.....+.. -+.|+.|+++|+.-.. ....+......+++|.+|||++|... ...... +..
T Consensus 263 ~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl-----~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~-~~k 336 (419)
T KOG2120|consen 263 DELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNL-----QKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQE-FFK 336 (419)
T ss_pred hhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhh-----hhhHHHHHHHhCCceeeeccccccccCchHHHH-HHh
Confidence 999999888776554333333 3678888888874321 11223333456777777777776432 222222 335
Q ss_pred CCCCCEEECcCCcCCCCCcc---CccCCCCcCEEEcCCC
Q 001719 446 NTNLKTLLLANNSLFGSFRM---PIHSHQKLATLDVSTN 481 (1021)
Q Consensus 446 l~~L~~L~L~~n~l~~~~~~---~~~~l~~L~~L~Ls~n 481 (1021)
++.|++|.++.|.. ++|. .+...|+|.+|++.++
T Consensus 337 f~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 337 FNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred cchheeeehhhhcC--CChHHeeeeccCcceEEEEeccc
Confidence 66666666666642 1221 2334445555554443
No 48
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.12 E-value=4.6e-07 Score=91.31 Aligned_cols=89 Identities=31% Similarity=0.315 Sum_probs=47.9
Q ss_pred CCCCCCEEeCCCCCCCCccccchhhhccCCCCCCEEeCCCCCCCCcccccCCCCCCCCEEEcCCcccccccChhccCCCC
Q 001719 105 PFQQLESLDLSWNNIAGCVENEGVERLSRLNNLKFLLLDSNYFNNSIFSSLGGLSSLRILSLADNRLNGSIDIKGLDSLS 184 (1021)
Q Consensus 105 ~l~~L~~LdLs~n~i~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~l~~l~ 184 (1021)
..++++.|||.+|.|+.-.. .+.-+.++++|++|+|+.|.+...|-.-=..+++|++|-|.+..+.=.-....+..++
T Consensus 69 ~~~~v~elDL~~N~iSdWse--I~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP 146 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSE--IGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLP 146 (418)
T ss_pred HhhhhhhhhcccchhccHHH--HHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcch
Confidence 45667777777777665432 1133556677777777777664322111134556666666666553222222445555
Q ss_pred CCCEEeCCCCC
Q 001719 185 NLEELDMSYNA 195 (1021)
Q Consensus 185 ~L~~L~Ls~n~ 195 (1021)
.+++|.+|.|+
T Consensus 147 ~vtelHmS~N~ 157 (418)
T KOG2982|consen 147 KVTELHMSDNS 157 (418)
T ss_pred hhhhhhhccch
Confidence 56666665553
No 49
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.09 E-value=4.3e-07 Score=90.26 Aligned_cols=47 Identities=23% Similarity=0.288 Sum_probs=29.7
Q ss_pred ccCCCCCCCEEeCCCCCCCCCCCcccccccCCCCCCCEEECCCCCCC
Q 001719 179 GLDSLSNLEELDMSYNAIDNLVVPQGLERLSTLSNLKFLRLDYNSFN 225 (1021)
Q Consensus 179 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~L~~n~i~ 225 (1021)
.+.+|++|+..+||.|.+....|+....-+++-+.|.+|.+++|.+.
T Consensus 87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlG 133 (388)
T COG5238 87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLG 133 (388)
T ss_pred HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCC
Confidence 45667777777777776666555544445566666666666666543
No 50
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.06 E-value=1.7e-07 Score=83.47 Aligned_cols=81 Identities=23% Similarity=0.416 Sum_probs=41.3
Q ss_pred ccEEEcccceecCcCccccc-CCCCCCEEEcCCCcCccchhhcccCCCCCCEEeCcCccCCCCCCcccccCCCCCEEEcc
Q 001719 819 MSGIDLSCNKLTGEIPTQIG-YLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLLGKIPPQLIVLNTLAVFRVA 897 (1021)
Q Consensus 819 L~~L~Ls~N~l~g~ip~~~~-~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls 897 (1021)
|+.++|++|.|. ..|+.|. ..+.++.|||++|.|+ .+|..++.++.|+.|+++.|.+. ..|..+..|.++.+|+..
T Consensus 55 l~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~ 131 (177)
T KOG4579|consen 55 LTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSP 131 (177)
T ss_pred EEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCC
Confidence 444555555555 3333332 2234555555555555 44555555555555555555555 444445555555555555
Q ss_pred CCcce
Q 001719 898 NNNLS 902 (1021)
Q Consensus 898 ~N~l~ 902 (1021)
+|.+-
T Consensus 132 ~na~~ 136 (177)
T KOG4579|consen 132 ENARA 136 (177)
T ss_pred CCccc
Confidence 55443
No 51
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.05 E-value=1.5e-07 Score=105.59 Aligned_cols=205 Identities=27% Similarity=0.245 Sum_probs=122.9
Q ss_pred CCCCCEEEccCcccccccCchhhhcCCCCceEEecccccccccchhhhccCCcccEEEccCcccc-----ccccCCCCCC
Q 001719 339 LPSLKTLYLLFTNFKGTIVNQELHNFTNLEELLLVKSDLHVSQLLQSIASFTSLKYLSIRGCVLK-----GALHGQDGGT 413 (1021)
Q Consensus 339 l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~l~~~~l~-----~~~~~~~~~~ 413 (1021)
+++++.|.+-.-.-.+...|..+..+.+|+.|.+.+|++........+ -..|++|-..+- +. ...|+-....
T Consensus 83 lqkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~L~~~~GL~~l--r~qLe~LIC~~S-l~Al~~v~ascggd~~n 159 (1096)
T KOG1859|consen 83 LQKTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGCDLSTAKGLQEL--RHQLEKLICHNS-LDALRHVFASCGGDISN 159 (1096)
T ss_pred HhhheeeeecccCCCCCCCCceeccccceeeEEecCcchhhhhhhHHH--HHhhhhhhhhcc-HHHHHHHHHHhcccccc
Confidence 344444444332222322255677888899999998887642211111 112333322211 00 0111111111
Q ss_pred cchhhcCCCCcCEEEecCCccccCCChhHhhcCCCCCEEECcCCcCCCCCccCccCCCCcCEEEcCCCCCCcccchhhhh
Q 001719 414 FPKFLYHQHDLKNVDLSHLNLSGKFPNWLVENNTNLKTLLLANNSLFGSFRMPIHSHQKLATLDVSTNFFRGHIPVEIGT 493 (1021)
Q Consensus 414 ~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ip~~~~~ 493 (1021)
-|.| ..|...+.+.|.+. .+... +.-++.|+.|+|++|+++... .+..+++|+.|||++|.+. .+|..--.
T Consensus 160 s~~W----n~L~~a~fsyN~L~-~mD~S-Lqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~-~vp~l~~~ 230 (1096)
T KOG1859|consen 160 SPVW----NKLATASFSYNRLV-LMDES-LQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR-HVPQLSMV 230 (1096)
T ss_pred chhh----hhHhhhhcchhhHH-hHHHH-HHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhc-cccccchh
Confidence 2222 35777788888776 23332 466788899999999887643 6677888899999998887 66643322
Q ss_pred cCCCCCEEECCCCcCCCCCCccccCCCCCCEEEcCCCcCCCccchhhhhcCCCCcEEECCCCccc
Q 001719 494 YLSGLMDLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGEIPDRMAIGCFSLEILALSNNNLQ 558 (1021)
Q Consensus 494 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~ 558 (1021)
.+ +|+.|.+++|.++.. ..+.++.+|+.||+++|-+.+.-.-.....+..|+.|.|.+|.+-
T Consensus 231 gc-~L~~L~lrnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 231 GC-KLQLLNLRNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred hh-hheeeeecccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 23 488888998888633 357788888888999888775333333335667888888888764
No 52
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.04 E-value=4.1e-07 Score=96.14 Aligned_cols=64 Identities=20% Similarity=0.141 Sum_probs=32.4
Q ss_pred CCCCCCCEEeCCCCCCCCCCCccccccc-CCCCCCCEEECCCC-CCCCccch-hccCCCCCCEEEcCCcc
Q 001719 181 DSLSNLEELDMSYNAIDNLVVPQGLERL-STLSNLKFLRLDYN-SFNSSIFS-SLGGLSSLRILSLADNR 247 (1021)
Q Consensus 181 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~l-~~l~~L~~L~L~~n-~i~~~~~~-~l~~l~~L~~L~L~~n~ 247 (1021)
.+++++++|++.++..... ..+..+ ..+++|++|++..| .++..... -...+++|++|+++++.
T Consensus 161 ~~CpnIehL~l~gc~~iTd---~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~ 227 (483)
T KOG4341|consen 161 SNCPNIEHLALYGCKKITD---SSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCP 227 (483)
T ss_pred hhCCchhhhhhhcceeccH---HHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCc
Confidence 4566666666665542111 111122 24666777776663 33333222 23456777777777764
No 53
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.97 E-value=6.6e-07 Score=94.64 Aligned_cols=137 Identities=18% Similarity=0.113 Sum_probs=72.5
Q ss_pred cCCCCCEEECcCCcCCCCCc--cCccCCCCcCEEEcCCCC-CCcccchhhhhcCCCCCEEECCCCcCCCC--CCccccCC
Q 001719 445 NNTNLKTLLLANNSLFGSFR--MPIHSHQKLATLDVSTNF-FRGHIPVEIGTYLSGLMDLNLSRNAFNGS--IPSSFADM 519 (1021)
Q Consensus 445 ~l~~L~~L~L~~n~l~~~~~--~~~~~l~~L~~L~Ls~n~-l~~~ip~~~~~~l~~L~~L~L~~n~l~~~--~p~~~~~l 519 (1021)
++..|+.|..+++...+..+ .--....+|+.+.++.++ ++..--..++.+++.|+.+++..+..... +...=.++
T Consensus 292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C 371 (483)
T KOG4341|consen 292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNC 371 (483)
T ss_pred hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCC
Confidence 34555666655554322111 112345666666666664 33222334455567777777777654311 11222356
Q ss_pred CCCCEEEcCCCcCCCccc----hhhhhcCCCCcEEECCCCccc-ccccccccCCCCccEEEccCCcc
Q 001719 520 KMLKSLDISYNQLTGEIP----DRMAIGCFSLEILALSNNNLQ-GHIFSKKFNLTNLMRLQLDGNKF 581 (1021)
Q Consensus 520 ~~L~~L~Ls~n~l~~~i~----~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l 581 (1021)
+.|+++.++++.....-. .....+...|+.+.++++... ....+.+..+++|+.+++-+++-
T Consensus 372 ~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~ 438 (483)
T KOG4341|consen 372 PRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQD 438 (483)
T ss_pred chhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhh
Confidence 777777777765321110 011124456777777777644 33345556677888888877753
No 54
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.96 E-value=3.9e-07 Score=81.20 Aligned_cols=100 Identities=21% Similarity=0.320 Sum_probs=60.4
Q ss_pred EEEcccceecCcCcccc---cCCCCCCEEEcCCCcCccchhhccc-CCCCCCEEeCcCccCCCCCCcccccCCCCCEEEc
Q 001719 821 GIDLSCNKLTGEIPTQI---GYLTRIRALNLSHNNLTGTIPTTFS-NLKQIESLDLSYNLLLGKIPPQLIVLNTLAVFRV 896 (1021)
Q Consensus 821 ~L~Ls~N~l~g~ip~~~---~~l~~L~~L~Ls~N~l~~~~p~~l~-~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~l 896 (1021)
.+||+++++- .|++.. .....|+..+|++|.+.. .|..|. ..+.++.|+|++|+|+ .+|.++..++.|+.+|+
T Consensus 31 ~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk~-fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl 107 (177)
T KOG4579|consen 31 FLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFKK-FPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNL 107 (177)
T ss_pred hcccccchhh-HHHHHHHHHhCCceEEEEecccchhhh-CCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhccc
Confidence 4566666654 344433 333455556777777773 343443 3346777777777776 66777777777777777
Q ss_pred cCCcceecCCCcccccCCCCcccccCcc
Q 001719 897 ANNNLSGKIPDRVAQFSTFEEDSYEGNP 924 (1021)
Q Consensus 897 s~N~l~g~ip~~~~~~~~~~~~~~~gN~ 924 (1021)
++|.+.. .|..+.++.+|..++..+|.
T Consensus 108 ~~N~l~~-~p~vi~~L~~l~~Lds~~na 134 (177)
T KOG4579|consen 108 RFNPLNA-EPRVIAPLIKLDMLDSPENA 134 (177)
T ss_pred ccCcccc-chHHHHHHHhHHHhcCCCCc
Confidence 7777763 34445556666666555553
No 55
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.87 E-value=1.1e-06 Score=87.47 Aligned_cols=95 Identities=19% Similarity=0.191 Sum_probs=52.1
Q ss_pred cCCCCCCCCEEEcCCcccccccCh---hccCCCCCCCEEeCCCCCCCCC---CCc---ccccccCCCCCCCEEECCCCCC
Q 001719 154 SLGGLSSLRILSLADNRLNGSIDI---KGLDSLSNLEELDMSYNAIDNL---VVP---QGLERLSTLSNLKFLRLDYNSF 224 (1021)
Q Consensus 154 ~l~~l~~L~~L~Ls~n~l~~~i~~---~~l~~l~~L~~L~Ls~n~l~~~---~~~---~~~~~l~~l~~L~~L~L~~n~i 224 (1021)
.+..+..+..+|||+|.|...... ..+++-.+|+..++|.-..... .+. -.+..+.+|++|+..+||.|.+
T Consensus 25 el~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAf 104 (388)
T COG5238 25 ELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAF 104 (388)
T ss_pred HHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeecccccc
Confidence 345577888888888887643211 1345566777777765322111 110 0112455666667777766666
Q ss_pred CCccchh----ccCCCCCCEEEcCCccC
Q 001719 225 NSSIFSS----LGGLSSLRILSLADNRF 248 (1021)
Q Consensus 225 ~~~~~~~----l~~l~~L~~L~L~~n~l 248 (1021)
....|.. ++.-..|++|.+++|.+
T Consensus 105 g~~~~e~L~d~is~~t~l~HL~l~NnGl 132 (388)
T COG5238 105 GSEFPEELGDLISSSTDLVHLKLNNNGL 132 (388)
T ss_pred CcccchHHHHHHhcCCCceeEEeecCCC
Confidence 5544433 34445566666666543
No 56
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.83 E-value=1.9e-05 Score=57.38 Aligned_cols=36 Identities=39% Similarity=0.653 Sum_probs=22.0
Q ss_pred CCCEEEcCCCcCccchhhcccCCCCCCEEeCcCccCC
Q 001719 842 RIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLL 878 (1021)
Q Consensus 842 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~ 878 (1021)
+|++|++++|+|+ .+|..+++|++|+.|++++|+|+
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4666666666666 45555666666666666666665
No 57
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.68 E-value=9.6e-05 Score=80.96 Aligned_cols=54 Identities=13% Similarity=0.066 Sum_probs=28.4
Q ss_pred CCcccEEEccCCccccccchhhhcCccccEEEccCCccCCCCCccccCCCCCcEEEcccc
Q 001719 663 PAYIEEIHLSKNKIEGRLESIIHYSPYLMTLDLSYNCLHGSIPTWIDRLPQLSYLLLANN 722 (1021)
Q Consensus 663 ~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N 722 (1021)
+..++.|++++|.++.. | ...++|+.|.++++.--..+|..+ .++|+.|++++|
T Consensus 51 ~~~l~~L~Is~c~L~sL-P---~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~C 104 (426)
T PRK15386 51 ARASGRLYIKDCDIESL-P---VLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHC 104 (426)
T ss_pred hcCCCEEEeCCCCCccc-C---CCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCc
Confidence 35566666666655533 2 122356666666543323445433 245666666665
No 58
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.64 E-value=4.4e-05 Score=55.44 Aligned_cols=37 Identities=32% Similarity=0.658 Sum_probs=32.8
Q ss_pred cccEEEcccceecCcCcccccCCCCCCEEEcCCCcCcc
Q 001719 818 SMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTG 855 (1021)
Q Consensus 818 ~L~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~~ 855 (1021)
+|+.|++++|+|+ .+|..+++|++|+.|++++|+|+.
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSB
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCC
Confidence 6889999999999 788889999999999999999994
No 59
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.60 E-value=0.00011 Score=70.74 Aligned_cols=106 Identities=28% Similarity=0.342 Sum_probs=63.4
Q ss_pred CCCEEeCCCCCCCCcccccCCCCCCCCEEEcCCcccccccChhccCCCCCCCEEeCCCCCCCCCCCcccccccCCCCCCC
Q 001719 136 NLKFLLLDSNYFNNSIFSSLGGLSSLRILSLADNRLNGSIDIKGLDSLSNLEELDMSYNAIDNLVVPQGLERLSTLSNLK 215 (1021)
Q Consensus 136 ~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~ 215 (1021)
....+||++|.+.. ...|..+..|.+|.|++|+|+ .|.+.--.-+++|+.|.|.+|+|... .++..+..|++|+
T Consensus 43 ~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~L~LtnNsi~~l---~dl~pLa~~p~L~ 116 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLKTLILTNNSIQEL---GDLDPLASCPKLE 116 (233)
T ss_pred ccceecccccchhh--cccCCCccccceEEecCCcce-eeccchhhhccccceEEecCcchhhh---hhcchhccCCccc
Confidence 44456666665532 334566666677777777666 55542223455677777777766654 2334566777777
Q ss_pred EEECCCCCCCCcc---chhccCCCCCCEEEcCCcc
Q 001719 216 FLRLDYNSFNSSI---FSSLGGLSSLRILSLADNR 247 (1021)
Q Consensus 216 ~L~L~~n~i~~~~---~~~l~~l~~L~~L~L~~n~ 247 (1021)
+|.+-+|.++... .-.+..+++|+.||..+-.
T Consensus 117 ~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 117 YLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred eeeecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence 7777777665431 1235677788888776543
No 60
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.46 E-value=0.00038 Score=76.37 Aligned_cols=55 Identities=11% Similarity=0.079 Sum_probs=31.4
Q ss_pred cCCCCcEEECCCCcccccccccccCCCCccEEEccCCcccccCCccccccCccCeEEccCC
Q 001719 543 GCFSLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPKSLSKCYLLGGLYLSDN 603 (1021)
Q Consensus 543 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 603 (1021)
.+.+++.|++++|.++.. |. -..+|++|.+++|.-...+|..+ .++|+.|++++|
T Consensus 50 ~~~~l~~L~Is~c~L~sL-P~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~C 104 (426)
T PRK15386 50 EARASGRLYIKDCDIESL-PV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHC 104 (426)
T ss_pred HhcCCCEEEeCCCCCccc-CC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCc
Confidence 456777777777766632 31 12357777777654333445433 245666666665
No 61
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.46 E-value=0.00018 Score=69.27 Aligned_cols=113 Identities=25% Similarity=0.249 Sum_probs=87.8
Q ss_pred CCCCCEEeCCCCCCCCccccchhhhccCCCCCCEEeCCCCCCCCcccccCCCCCCCCEEEcCCcccccccChhccCCCCC
Q 001719 106 FQQLESLDLSWNNIAGCVENEGVERLSRLNNLKFLLLDSNYFNNSIFSSLGGLSSLRILSLADNRLNGSIDIKGLDSLSN 185 (1021)
Q Consensus 106 l~~L~~LdLs~n~i~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~l~~l~~ 185 (1021)
......+||++|++..... |..++.|.+|.|.+|.|+..-|.--.-+++|+.|.|.+|++..--....+..|++
T Consensus 41 ~d~~d~iDLtdNdl~~l~~------lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~ 114 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLRKLDN------LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPK 114 (233)
T ss_pred ccccceecccccchhhccc------CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCc
Confidence 3466789999999876644 8899999999999999987666655667889999999998863222346889999
Q ss_pred CCEEeCCCCCCCCCCCcccccccCCCCCCCEEECCCCCCC
Q 001719 186 LEELDMSYNAIDNLVVPQGLERLSTLSNLKFLRLDYNSFN 225 (1021)
Q Consensus 186 L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~L~~n~i~ 225 (1021)
|++|.+-+|.++...- .-..-+..+++|++||+......
T Consensus 115 L~~Ltll~Npv~~k~~-YR~yvl~klp~l~~LDF~kVt~~ 153 (233)
T KOG1644|consen 115 LEYLTLLGNPVEHKKN-YRLYVLYKLPSLRTLDFQKVTRK 153 (233)
T ss_pred cceeeecCCchhcccC-ceeEEEEecCcceEeehhhhhHH
Confidence 9999999998876432 22235788999999999876543
No 62
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.40 E-value=9.3e-05 Score=88.36 Aligned_cols=138 Identities=23% Similarity=0.343 Sum_probs=95.8
Q ss_pred CCCCCEEeCCCCCCCCccccchhhhcc-CCCCCCEEeCCCCCCCCc-ccccCCCCCCCCEEEcCCcccccccChhccCCC
Q 001719 106 FQQLESLDLSWNNIAGCVENEGVERLS-RLNNLKFLLLDSNYFNNS-IFSSLGGLSSLRILSLADNRLNGSIDIKGLDSL 183 (1021)
Q Consensus 106 l~~L~~LdLs~n~i~~~~~~~~~~~l~-~l~~L~~L~Ls~n~~~~~-~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~l~~l 183 (1021)
-.+|++||+++...-.. .+...++ .||.|+.|.+++-.+... ...-..++++|+.||+|+++++ .+ .++++|
T Consensus 121 r~nL~~LdI~G~~~~s~---~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-nl--~GIS~L 194 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSN---GWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-NL--SGISRL 194 (699)
T ss_pred HHhhhhcCccccchhhc---cHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCcc-Cc--HHHhcc
Confidence 36789999988654321 1223343 588999999888766433 2334567889999999999887 44 378899
Q ss_pred CCCCEEeCCCCCCCCCCCcccccccCCCCCCCEEECCCCCCCCcc------chhccCCCCCCEEEcCCccCcccc
Q 001719 184 SNLEELDMSYNAIDNLVVPQGLERLSTLSNLKFLRLDYNSFNSSI------FSSLGGLSSLRILSLADNRFNGSI 252 (1021)
Q Consensus 184 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~------~~~l~~l~~L~~L~L~~n~l~~~~ 252 (1021)
++||.|.+.+=.+... ..+..+.+|++|++||+|........ .+.-..||+|+.||.+++.+.+.+
T Consensus 195 knLq~L~mrnLe~e~~---~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~ 266 (699)
T KOG3665|consen 195 KNLQVLSMRNLEFESY---QDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEI 266 (699)
T ss_pred ccHHHHhccCCCCCch---hhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHH
Confidence 9999998877665542 34457888999999999887654321 112245889999999988776543
No 63
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.33 E-value=0.00049 Score=64.55 Aligned_cols=84 Identities=26% Similarity=0.278 Sum_probs=29.9
Q ss_pred hhhhcCCCCCEEECCCCcCCCCCCccccCCCCCCEEEcCCCcCCCccchhhhhcCCCCcEEECCCCcccccccccccCCC
Q 001719 490 EIGTYLSGLMDLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGEIPDRMAIGCFSLEILALSNNNLQGHIFSKKFNLT 569 (1021)
Q Consensus 490 ~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 569 (1021)
..+..+++|+.+.+.. .+..+....|.++++|+.+.+.++ +. .++...+.++.+++.+.+.+ .+.......|..++
T Consensus 6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~ 81 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCT 81 (129)
T ss_dssp TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-T
T ss_pred HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-cc-ccceeeeecccccccccccc-cccccccccccccc
Confidence 3333344455555443 233333344555555555555443 33 44444444444455544433 22222223333344
Q ss_pred CccEEEcc
Q 001719 570 NLMRLQLD 577 (1021)
Q Consensus 570 ~L~~L~L~ 577 (1021)
+|+.+++.
T Consensus 82 ~l~~i~~~ 89 (129)
T PF13306_consen 82 NLKNIDIP 89 (129)
T ss_dssp TECEEEET
T ss_pred cccccccC
Confidence 44444443
No 64
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.29 E-value=5.8e-05 Score=90.11 Aligned_cols=108 Identities=23% Similarity=0.297 Sum_probs=64.8
Q ss_pred CCCCeeeCCCCCCCCCcCChhh-hhhccccccccCCcccccCcccccccCCCCCCCEEEccCcccccccCchhhhcCCCC
Q 001719 289 SNLEELDMTNNAINNLVVPKDY-RCLRKLNTLYLGGIAMIDGSKVLQSIGSLPSLKTLYLLFTNFKGTIVNQELHNFTNL 367 (1021)
Q Consensus 289 ~~L~~L~Ls~n~~~~~~~p~~l-~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L 367 (1021)
.+|+.||+++...-...-|..+ ..+|.|++|.+.+-.+.... +.....++|+|..||+++++++. ...++++++|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~d-F~~lc~sFpNL~sLDIS~TnI~n---l~GIS~LknL 197 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDD-FSQLCASFPNLRSLDISGTNISN---LSGISRLKNL 197 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchh-HHHHhhccCccceeecCCCCccC---cHHHhccccH
Confidence 5788888877543221112222 34667777777665554432 33445667777777777777664 2456677777
Q ss_pred ceEEecccccccccchhhhccCCcccEEEccCc
Q 001719 368 EELLLVKSDLHVSQLLQSIASFTSLKYLSIRGC 400 (1021)
Q Consensus 368 ~~L~L~~n~~~~~~~~~~l~~l~~L~~L~l~~~ 400 (1021)
+.|.+.+-.+........+-.+++|+.||+|.-
T Consensus 198 q~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~ 230 (699)
T KOG3665|consen 198 QVLSMRNLEFESYQDLIDLFNLKKLRVLDISRD 230 (699)
T ss_pred HHHhccCCCCCchhhHHHHhcccCCCeeecccc
Confidence 777776666655444445666666776666654
No 65
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.19 E-value=0.00085 Score=62.88 Aligned_cols=124 Identities=19% Similarity=0.236 Sum_probs=59.7
Q ss_pred ccccCCCCCCEEEcCCCcCCCccchhhhhcCCCCcEEECCCCcccccccccccCCCCccEEEccCCcccccCCccccccC
Q 001719 514 SSFADMKMLKSLDISYNQLTGEIPDRMAIGCFSLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPKSLSKCY 593 (1021)
Q Consensus 514 ~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 593 (1021)
..|.++++|+.+.+.. .+. .++...|.++.+|+.+.+..+ +.......|.++++++.+.+.+ .+.......|..++
T Consensus 6 ~~F~~~~~l~~i~~~~-~~~-~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~ 81 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN-TIK-KIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCT 81 (129)
T ss_dssp TTTTT-TT--EEEETS-T---EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-T
T ss_pred HHHhCCCCCCEEEECC-Cee-EeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccc
Confidence 4577777888888774 455 677777777777888877764 5555555666776777777765 33334445566677
Q ss_pred ccCeEEccCCcCCCcchhhhcCCCCCcEEECCCCcccCCccccccCCCCCC
Q 001719 594 LLGGLYLSDNHLSGKIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLDYLK 644 (1021)
Q Consensus 594 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~ 644 (1021)
+|+.+++..+ +.......|.++ +|+.+.+.. .+.......|.++++|+
T Consensus 82 ~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l~ 129 (129)
T PF13306_consen 82 NLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKLK 129 (129)
T ss_dssp TECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG------
T ss_pred cccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccCC
Confidence 7777777654 443444456665 677776665 33334445566665553
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.90 E-value=0.00045 Score=69.73 Aligned_cols=88 Identities=33% Similarity=0.372 Sum_probs=51.5
Q ss_pred cCCCCCCCCEEEcCCc--ccccccChhccCCCCCCCEEeCCCCCCCCCCCcccccccCCCCCCCEEECCCCCCCCcc---
Q 001719 154 SLGGLSSLRILSLADN--RLNGSIDIKGLDSLSNLEELDMSYNAIDNLVVPQGLERLSTLSNLKFLRLDYNSFNSSI--- 228 (1021)
Q Consensus 154 ~l~~l~~L~~L~Ls~n--~l~~~i~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~--- 228 (1021)
.+-.|++|+.|.+|.| .+.+.++. ...++++|++|+++.|+|..+ ..+..+..+.+|..|++..|..+...
T Consensus 60 ~~P~Lp~LkkL~lsdn~~~~~~~l~v-l~e~~P~l~~l~ls~Nki~~l---stl~pl~~l~nL~~Ldl~n~~~~~l~dyr 135 (260)
T KOG2739|consen 60 NFPKLPKLKKLELSDNYRRVSGGLEV-LAEKAPNLKVLNLSGNKIKDL---STLRPLKELENLKSLDLFNCSVTNLDDYR 135 (260)
T ss_pred cCCCcchhhhhcccCCccccccccee-hhhhCCceeEEeecCCccccc---cccchhhhhcchhhhhcccCCccccccHH
Confidence 3455566666666666 44444444 445557777777777766642 22235566677777777777665421
Q ss_pred chhccCCCCCCEEEcCC
Q 001719 229 FSSLGGLSSLRILSLAD 245 (1021)
Q Consensus 229 ~~~l~~l~~L~~L~L~~ 245 (1021)
-..|.-+++|++|+-..
T Consensus 136 e~vf~ll~~L~~LD~~d 152 (260)
T KOG2739|consen 136 EKVFLLLPSLKYLDGCD 152 (260)
T ss_pred HHHHHHhhhhccccccc
Confidence 13355667777776443
No 67
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.87 E-value=0.00043 Score=69.82 Aligned_cols=111 Identities=23% Similarity=0.269 Sum_probs=74.0
Q ss_pred CCCCCCEEeCCCCCCCCccccchhhhccCCCCCCEEeCCCC--CCCCcccccCCCCCCCCEEEcCCcccccccChhccCC
Q 001719 105 PFQQLESLDLSWNNIAGCVENEGVERLSRLNNLKFLLLDSN--YFNNSIFSSLGGLSSLRILSLADNRLNGSIDIKGLDS 182 (1021)
Q Consensus 105 ~l~~L~~LdLs~n~i~~~~~~~~~~~l~~l~~L~~L~Ls~n--~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~l~~ 182 (1021)
.+..|+.|++.+..++... .+..|++|++|.+|.| .+.+.++.....+++|++|++++|++.---....+..
T Consensus 41 ~~~~le~ls~~n~gltt~~------~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~ 114 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTLT------NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKE 114 (260)
T ss_pred cccchhhhhhhccceeecc------cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhh
Confidence 3445556666655555433 3677888999999999 5555566666677999999999998862111125678
Q ss_pred CCCCCEEeCCCCCCCCCCCcccccccCCCCCCCEEECCCC
Q 001719 183 LSNLEELDMSYNAIDNLVVPQGLERLSTLSNLKFLRLDYN 222 (1021)
Q Consensus 183 l~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~L~~n 222 (1021)
+.+|..||+..|..+.... ..-..+.-+++|++|+-...
T Consensus 115 l~nL~~Ldl~n~~~~~l~d-yre~vf~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 115 LENLKSLDLFNCSVTNLDD-YREKVFLLLPSLKYLDGCDV 153 (260)
T ss_pred hcchhhhhcccCCcccccc-HHHHHHHHhhhhcccccccc
Confidence 8889999999988776432 11224556788888775543
No 68
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.26 E-value=0.00091 Score=78.95 Aligned_cols=62 Identities=31% Similarity=0.233 Sum_probs=30.5
Q ss_pred CCCCCEEECCCCc-CCCCCCccccC-CCCCCEEEcCCCc-CCCccchhhhhcCCCCcEEECCCCc
Q 001719 495 LSGLMDLNLSRNA-FNGSIPSSFAD-MKMLKSLDISYNQ-LTGEIPDRMAIGCFSLEILALSNNN 556 (1021)
Q Consensus 495 l~~L~~L~L~~n~-l~~~~p~~~~~-l~~L~~L~Ls~n~-l~~~i~~~~~~~l~~L~~L~L~~n~ 556 (1021)
+++|+.|+++.+. ++...-..+.. +++|++|.+.++. ++...-..+...+++|++|+++.+.
T Consensus 242 ~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 242 CRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH 306 (482)
T ss_pred cCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence 4555555555555 33222222222 5556666655554 4433333444455566666666554
No 69
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.17 E-value=0.00099 Score=78.63 Aligned_cols=36 Identities=28% Similarity=0.248 Sum_probs=16.3
Q ss_pred CCCCCEEECCCCC-CCCccchhccC-CCCCCEEEcCCc
Q 001719 211 LSNLKFLRLDYNS-FNSSIFSSLGG-LSSLRILSLADN 246 (1021)
Q Consensus 211 l~~L~~L~L~~n~-i~~~~~~~l~~-l~~L~~L~L~~n 246 (1021)
+++|+.|+++.+. ++......++. +++|++|.+.++
T Consensus 242 ~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c 279 (482)
T KOG1947|consen 242 CRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNC 279 (482)
T ss_pred cCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCC
Confidence 4555555555544 33333333332 455555554444
No 70
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.15 E-value=0.00021 Score=71.87 Aligned_cols=102 Identities=30% Similarity=0.327 Sum_probs=71.0
Q ss_pred CCCCCCEEeCCCCCCCCcccccCCCCCCCCEEEcCCcccccccChhccCCCCCCCEEeCCCCCCCCCCCcccccccCCCC
Q 001719 133 RLNNLKFLLLDSNYFNNSIFSSLGGLSSLRILSLADNRLNGSIDIKGLDSLSNLEELDMSYNAIDNLVVPQGLERLSTLS 212 (1021)
Q Consensus 133 ~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~ 212 (1021)
.+.+.+.|++-+|.+++ .....+++.|++|.||-|+|+ .+. .+..|++|++|.|..|.|..+. .+.-+.+++
T Consensus 17 dl~~vkKLNcwg~~L~D--Isic~kMp~lEVLsLSvNkIs-sL~--pl~rCtrLkElYLRkN~I~sld---EL~YLknlp 88 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDD--ISICEKMPLLEVLSLSVNKIS-SLA--PLQRCTRLKELYLRKNCIESLD---ELEYLKNLP 88 (388)
T ss_pred HHHHhhhhcccCCCccH--HHHHHhcccceeEEeeccccc-cch--hHHHHHHHHHHHHHhcccccHH---HHHHHhcCc
Confidence 34556667777777665 233457778888888888887 444 5778888888888888887652 344677888
Q ss_pred CCCEEECCCCCCCCccch-----hccCCCCCCEEE
Q 001719 213 NLKFLRLDYNSFNSSIFS-----SLGGLSSLRILS 242 (1021)
Q Consensus 213 ~L~~L~L~~n~i~~~~~~-----~l~~l~~L~~L~ 242 (1021)
+|+.|.|..|.-.+..+. .+.-||+|+.||
T Consensus 89 sLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 89 SLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 888888888876654332 356677777775
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.44 E-value=0.0046 Score=37.22 Aligned_cols=19 Identities=58% Similarity=0.901 Sum_probs=8.3
Q ss_pred CCEEEcCCCcCccchhhccc
Q 001719 843 IRALNLSHNNLTGTIPTTFS 862 (1021)
Q Consensus 843 L~~L~Ls~N~l~~~~p~~l~ 862 (1021)
|++|||++|+|+ .+|++|+
T Consensus 2 L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp ESEEEETSSEES-EEGTTTT
T ss_pred ccEEECCCCcCE-eCChhhc
Confidence 344444444444 3443333
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.39 E-value=0.0067 Score=36.53 Aligned_cols=19 Identities=47% Similarity=0.551 Sum_probs=9.8
Q ss_pred CCEEeCcCccCCCCCCcccc
Q 001719 867 IESLDLSYNLLLGKIPPQLI 886 (1021)
Q Consensus 867 L~~LdLs~N~l~g~ip~~l~ 886 (1021)
|++|||++|+|+ .||.+|+
T Consensus 2 L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp ESEEEETSSEES-EEGTTTT
T ss_pred ccEEECCCCcCE-eCChhhc
Confidence 455555555555 4554443
No 73
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.29 E-value=0.0019 Score=65.22 Aligned_cols=83 Identities=27% Similarity=0.338 Sum_probs=54.0
Q ss_pred CCCCCCCCeeeCCCCCCCCCcCChhhhhhccccccccCCcccccCcccccccCCCCCCCEEEccCcccccccCch----h
Q 001719 285 LDSLSNLEELDMTNNAINNLVVPKDYRCLRKLNTLYLGGIAMIDGSKVLQSIGSLPSLKTLYLLFTNFKGTIVNQ----E 360 (1021)
Q Consensus 285 l~~l~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~----~ 360 (1021)
..+++.|+.|.|+-|.|+.+ ..+..+++|++|+|..|.+....++ ..+.++|+|+.|+|..|.-.|...+. .
T Consensus 37 c~kMp~lEVLsLSvNkIssL---~pl~rCtrLkElYLRkN~I~sldEL-~YLknlpsLr~LWL~ENPCc~~ag~nYR~~V 112 (388)
T KOG2123|consen 37 CEKMPLLEVLSLSVNKISSL---APLQRCTRLKELYLRKNCIESLDEL-EYLKNLPSLRTLWLDENPCCGEAGQNYRRKV 112 (388)
T ss_pred HHhcccceeEEeeccccccc---hhHHHHHHHHHHHHHhcccccHHHH-HHHhcCchhhhHhhccCCcccccchhHHHHH
Confidence 45677888888888888763 5677777788887777766554333 45677788888888777665544221 2
Q ss_pred hhcCCCCceEE
Q 001719 361 LHNFTNLEELL 371 (1021)
Q Consensus 361 l~~l~~L~~L~ 371 (1021)
+.-+++|+.||
T Consensus 113 LR~LPnLkKLD 123 (388)
T KOG2123|consen 113 LRVLPNLKKLD 123 (388)
T ss_pred HHHcccchhcc
Confidence 34455555443
No 74
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=93.06 E-value=0.001 Score=76.16 Aligned_cols=88 Identities=26% Similarity=0.240 Sum_probs=50.0
Q ss_pred CCEEeCCCCCCCCccccchhhhccCCCCCCEEeCCCCCCCCcccc----cCCCC-CCCCEEEcCCcccccc----cChhc
Q 001719 109 LESLDLSWNNIAGCVENEGVERLSRLNNLKFLLLDSNYFNNSIFS----SLGGL-SSLRILSLADNRLNGS----IDIKG 179 (1021)
Q Consensus 109 L~~LdLs~n~i~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~----~l~~l-~~L~~L~Ls~n~l~~~----i~~~~ 179 (1021)
++.|.|.+|.+...........+....+|..|++++|.+.+.-.. .+... ..|++|++..|.+.+. +.. .
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~-~ 167 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAA-V 167 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHH-H
Confidence 667777777776654444445666777777777777776543221 22222 4556666666655432 221 3
Q ss_pred cCCCCCCCEEeCCCCCCC
Q 001719 180 LDSLSNLEELDMSYNAID 197 (1021)
Q Consensus 180 l~~l~~L~~L~Ls~n~l~ 197 (1021)
+.....++.+|++.|.+.
T Consensus 168 L~~~~~l~~l~l~~n~l~ 185 (478)
T KOG4308|consen 168 LEKNEHLTELDLSLNGLI 185 (478)
T ss_pred HhcccchhHHHHHhcccc
Confidence 444556666666666553
No 75
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=92.43 E-value=0.0017 Score=74.35 Aligned_cols=178 Identities=26% Similarity=0.224 Sum_probs=120.6
Q ss_pred ccccCCCCCCEEeCCCCCCCCccccchhhhccCC-CCCCEEeCCCCCCCCc----ccccCCCCCCCCEEEcCCccccc--
Q 001719 101 SLFTPFQQLESLDLSWNNIAGCVENEGVERLSRL-NNLKFLLLDSNYFNNS----IFSSLGGLSSLRILSLADNRLNG-- 173 (1021)
Q Consensus 101 ~~~~~l~~L~~LdLs~n~i~~~~~~~~~~~l~~l-~~L~~L~Ls~n~~~~~----~~~~l~~l~~L~~L~Ls~n~l~~-- 173 (1021)
.++....+|..|++++|.+.+.......+.+... +.|++|++..|.+++. +...+....+++.+|++.|.+..
T Consensus 109 ~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g 188 (478)
T KOG4308|consen 109 QALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELG 188 (478)
T ss_pred HHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhh
Confidence 4566788999999999999854332222344444 6788899999988654 56667789999999999998731
Q ss_pred c-cChhcc----CCCCCCCEEeCCCCCCCCCCCcccccccCCCCC-CCEEECCCCCCCCcc----chhccCC-CCCCEEE
Q 001719 174 S-IDIKGL----DSLSNLEELDMSYNAIDNLVVPQGLERLSTLSN-LKFLRLDYNSFNSSI----FSSLGGL-SSLRILS 242 (1021)
Q Consensus 174 ~-i~~~~l----~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~-L~~L~L~~n~i~~~~----~~~l~~l-~~L~~L~ 242 (1021)
. .....+ ....++++|++++|.++..........+...+. +..+++..|.+.+.. ...+..+ ..+++++
T Consensus 189 ~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~ 268 (478)
T KOG4308|consen 189 LLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLD 268 (478)
T ss_pred hHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhh
Confidence 1 111133 357789999999998874332222224555666 777999999887542 3345555 6788999
Q ss_pred cCCccCcccccccCccccccccCCcccceeecCCCcCCCCCCCCCCCCCCeeeCCCCCCCC
Q 001719 243 LADNRFNGSIDIKGKQASSILRVPSFVDLVSLSSWSVGINTGLDSLSNLEELDMTNNAINN 303 (1021)
Q Consensus 243 L~~n~l~~~~p~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~ 303 (1021)
++.|.++..-... ....+..++.++++.++.|.+..
T Consensus 269 l~~nsi~~~~~~~-------------------------L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 269 LSRNSITEKGVRD-------------------------LAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred hhcCCccccchHH-------------------------HHHHHhhhHHHHHhhcccCcccc
Confidence 9999876542221 01135567789999999887765
No 76
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=90.05 E-value=0.0099 Score=58.65 Aligned_cols=82 Identities=18% Similarity=0.197 Sum_probs=70.1
Q ss_pred cccEEEcccceecCcCcccccCCCCCCEEEcCCCcCccchhhcccCCCCCCEEeCcCccCCCCCCcccccCCCCCEEEcc
Q 001719 818 SMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLLGKIPPQLIVLNTLAVFRVA 897 (1021)
Q Consensus 818 ~L~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls 897 (1021)
..+.||++.|++. ..-..+.-++.|..||+|.|++. ..|..++++..+..+++..|+++ ..|.++..++.++++++-
T Consensus 43 r~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k 119 (326)
T KOG0473|consen 43 RVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQK 119 (326)
T ss_pred eeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhc
Confidence 4567999999987 55566777888899999999998 78889999999999999999988 789999999999999988
Q ss_pred CCcce
Q 001719 898 NNNLS 902 (1021)
Q Consensus 898 ~N~l~ 902 (1021)
.|.+.
T Consensus 120 ~~~~~ 124 (326)
T KOG0473|consen 120 KTEFF 124 (326)
T ss_pred cCcch
Confidence 88754
No 77
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=89.98 E-value=0.17 Score=28.21 Aligned_cols=11 Identities=55% Similarity=0.721 Sum_probs=3.5
Q ss_pred CCEEeCcCccC
Q 001719 867 IESLDLSYNLL 877 (1021)
Q Consensus 867 L~~LdLs~N~l 877 (1021)
|+.|||++|+|
T Consensus 3 L~~L~l~~n~L 13 (17)
T PF13504_consen 3 LRTLDLSNNRL 13 (17)
T ss_dssp -SEEEETSS--
T ss_pred cCEEECCCCCC
Confidence 44444444443
No 78
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=88.58 E-value=0.32 Score=27.10 Aligned_cols=13 Identities=54% Similarity=0.772 Sum_probs=5.1
Q ss_pred CCCEEEcCCCcCC
Q 001719 521 MLKSLDISYNQLT 533 (1021)
Q Consensus 521 ~L~~L~Ls~n~l~ 533 (1021)
+|++|++++|+++
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 4455555555544
No 79
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=86.46 E-value=0.023 Score=56.14 Aligned_cols=92 Identities=26% Similarity=0.340 Sum_probs=77.9
Q ss_pred cCc-ccccCCCCCCEEEcCCCcCccchhhcccCCCCCCEEeCcCccCCCCCCcccccCCCCCEEEccCCcceecCCCccc
Q 001719 832 EIP-TQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLLGKIPPQLIVLNTLAVFRVANNNLSGKIPDRVA 910 (1021)
Q Consensus 832 ~ip-~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~ip~~~~ 910 (1021)
+|| .++...+..+.||++.|++. ..-..|+-++.|..||+|.|++. ..|..+..+..+..+++..|+++ ..|.+++
T Consensus 32 ~~~v~ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~ 108 (326)
T KOG0473|consen 32 EIPVREIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQK 108 (326)
T ss_pred ccchhhhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCcccc
Confidence 555 35677889999999999988 45567888999999999999998 78999999999999999999998 5677778
Q ss_pred ccCCCCcccccCccCC
Q 001719 911 QFSTFEEDSYEGNPFL 926 (1021)
Q Consensus 911 ~~~~~~~~~~~gN~~l 926 (1021)
+.+.....+.-+||+.
T Consensus 109 k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 109 KEPHPKKNEQKKTEFF 124 (326)
T ss_pred ccCCcchhhhccCcch
Confidence 8999988888888753
No 80
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=85.46 E-value=0.8 Score=28.71 Aligned_cols=22 Identities=36% Similarity=0.563 Sum_probs=15.0
Q ss_pred CCCCCEEEcCCCcCCCccchhhh
Q 001719 519 MKMLKSLDISYNQLTGEIPDRMA 541 (1021)
Q Consensus 519 l~~L~~L~Ls~n~l~~~i~~~~~ 541 (1021)
+++|+.|+|++|+++ .+|...|
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00370 1 LPNLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHHHc
Confidence 356777777777777 6666654
No 81
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=85.46 E-value=0.8 Score=28.71 Aligned_cols=22 Identities=36% Similarity=0.563 Sum_probs=15.0
Q ss_pred CCCCCEEEcCCCcCCCccchhhh
Q 001719 519 MKMLKSLDISYNQLTGEIPDRMA 541 (1021)
Q Consensus 519 l~~L~~L~Ls~n~l~~~i~~~~~ 541 (1021)
+++|+.|+|++|+++ .+|...|
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00369 1 LPNLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHHHc
Confidence 356777777777777 6666654
No 82
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=84.75 E-value=0.79 Score=28.74 Aligned_cols=14 Identities=43% Similarity=0.503 Sum_probs=7.1
Q ss_pred CCCCEEeCcCccCC
Q 001719 865 KQIESLDLSYNLLL 878 (1021)
Q Consensus 865 ~~L~~LdLs~N~l~ 878 (1021)
++|++|+|++|+|+
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00369 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 34555555555554
No 83
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=84.75 E-value=0.79 Score=28.74 Aligned_cols=14 Identities=43% Similarity=0.503 Sum_probs=7.1
Q ss_pred CCCCEEeCcCccCC
Q 001719 865 KQIESLDLSYNLLL 878 (1021)
Q Consensus 865 ~~L~~LdLs~N~l~ 878 (1021)
++|++|+|++|+|+
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00370 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 34555555555554
No 84
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=84.48 E-value=0.29 Score=30.10 Aligned_cols=20 Identities=25% Similarity=0.426 Sum_probs=9.1
Q ss_pred CCCCEEEcCCCcCccchhhc
Q 001719 841 TRIRALNLSHNNLTGTIPTT 860 (1021)
Q Consensus 841 ~~L~~L~Ls~N~l~~~~p~~ 860 (1021)
++|++|+|++|.|++.....
T Consensus 2 ~~L~~L~l~~n~i~~~g~~~ 21 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGASA 21 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHHH
Confidence 34555555555555444433
No 85
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.14 E-value=0.22 Score=48.76 Aligned_cols=84 Identities=24% Similarity=0.160 Sum_probs=45.4
Q ss_pred CCCCeeeCCCCCCCCCcCChhhhhhccccccccCCcccccCcccccccCCCCCCCEEEccCcccccccCchhhhcCCCCc
Q 001719 289 SNLEELDMTNNAINNLVVPKDYRCLRKLNTLYLGGIAMIDGSKVLQSIGSLPSLKTLYLLFTNFKGTIVNQELHNFTNLE 368 (1021)
Q Consensus 289 ~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~ 368 (1021)
..++.+|-+++.|.. .--+.+..++.++.|.+..|...++..+..--+-.++|+.|+++.|.-..+.....+..+++|+
T Consensus 101 ~~IeaVDAsds~I~~-eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr 179 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMY-EGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLR 179 (221)
T ss_pred ceEEEEecCCchHHH-HHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhH
Confidence 357788888887766 2224555556666666666665554332211123456666666665433222234455555555
Q ss_pred eEEec
Q 001719 369 ELLLV 373 (1021)
Q Consensus 369 ~L~L~ 373 (1021)
.|.+.
T Consensus 180 ~L~l~ 184 (221)
T KOG3864|consen 180 RLHLY 184 (221)
T ss_pred HHHhc
Confidence 55544
No 86
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.33 E-value=0.36 Score=47.27 Aligned_cols=35 Identities=23% Similarity=0.257 Sum_probs=16.2
Q ss_pred CCCCCEEECCCC-cCCCCCCccccCCCCCCEEEcCC
Q 001719 495 LSGLMDLNLSRN-AFNGSIPSSFADMKMLKSLDISY 529 (1021)
Q Consensus 495 l~~L~~L~L~~n-~l~~~~p~~~~~l~~L~~L~Ls~ 529 (1021)
.++|+.|++++| .|+..--..+..+++|+.|.+.+
T Consensus 150 ~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~ 185 (221)
T KOG3864|consen 150 APSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYD 185 (221)
T ss_pred ccchheeeccCCCeechhHHHHHHHhhhhHHHHhcC
Confidence 455555555554 23322223344455555555443
No 87
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=72.87 E-value=2.9 Score=26.30 Aligned_cols=15 Identities=47% Similarity=0.600 Sum_probs=10.5
Q ss_pred CCCCCEEeCcCccCC
Q 001719 864 LKQIESLDLSYNLLL 878 (1021)
Q Consensus 864 l~~L~~LdLs~N~l~ 878 (1021)
+++|+.|+|++|+|+
T Consensus 1 L~~L~~L~L~~NkI~ 15 (26)
T smart00365 1 LTNLEELDLSQNKIK 15 (26)
T ss_pred CCccCEEECCCCccc
Confidence 356777777777775
No 88
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=68.15 E-value=2.2 Score=57.82 Aligned_cols=36 Identities=31% Similarity=0.482 Sum_probs=19.2
Q ss_pred ccCCcceecCCCcccccCCCCcccccCccCCCCCCC
Q 001719 896 VANNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGLPL 931 (1021)
Q Consensus 896 ls~N~l~g~ip~~~~~~~~~~~~~~~gN~~lC~~~l 931 (1021)
|++|+|+..-+..|..+.++..+++.||||.|+|.+
T Consensus 2 LSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CDC~L 37 (2740)
T TIGR00864 2 ISNNKISTIEEGICANLCNLSEIDLSGNPFECDCGL 37 (2740)
T ss_pred CCCCcCCccChHHhccCCCceEEEeeCCcccccccc
Confidence 334444333233333344455556667888888875
No 89
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=61.74 E-value=5.5 Score=24.99 Aligned_cols=13 Identities=31% Similarity=0.465 Sum_probs=7.0
Q ss_pred CCCEEeCcCccCC
Q 001719 866 QIESLDLSYNLLL 878 (1021)
Q Consensus 866 ~L~~LdLs~N~l~ 878 (1021)
+|+.|++++|+|+
T Consensus 3 ~L~~L~vs~N~Lt 15 (26)
T smart00364 3 SLKELNVSNNQLT 15 (26)
T ss_pred ccceeecCCCccc
Confidence 3555555555554
No 90
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=58.69 E-value=59 Score=36.65 Aligned_cols=61 Identities=21% Similarity=0.119 Sum_probs=28.6
Q ss_pred CCEEeCCCCCCCCCCCcccccccCCCCCCCEEECCCCCCCCc---cchhccCCCCCCEEEcCCcc
Q 001719 186 LEELDMSYNAIDNLVVPQGLERLSTLSNLKFLRLDYNSFNSS---IFSSLGGLSSLRILSLADNR 247 (1021)
Q Consensus 186 L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~---~~~~l~~l~~L~~L~L~~n~ 247 (1021)
+.+++|+.|.....++. .+.....-..++.++.+...+.-. .+-..+.-++|++.+++.|.
T Consensus 216 lteldls~n~~Kddip~-~~n~~a~~~vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng 279 (553)
T KOG4242|consen 216 LTELDLSTNGGKDDIPR-TLNKKAGTLVLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNG 279 (553)
T ss_pred ccccccccCCCCccchh-HHHHhhhhhhhhcccccccccchhhcccccccccccccchhhhccCC
Confidence 56666666665554441 122222334455555555544321 12223334455555555554
No 91
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=56.62 E-value=8.5 Score=24.66 Aligned_cols=14 Identities=43% Similarity=0.425 Sum_probs=8.3
Q ss_pred CCCCEEeCcCccCC
Q 001719 865 KQIESLDLSYNLLL 878 (1021)
Q Consensus 865 ~~L~~LdLs~N~l~ 878 (1021)
++|++|||++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 35666666666654
No 92
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=52.95 E-value=64 Score=36.40 Aligned_cols=20 Identities=10% Similarity=0.049 Sum_probs=11.0
Q ss_pred CCCCEEECcCCcCCCCCccC
Q 001719 447 TNLKTLLLANNSLFGSFRMP 466 (1021)
Q Consensus 447 ~~L~~L~L~~n~l~~~~~~~ 466 (1021)
+.+++++++.|.+....+..
T Consensus 165 pr~r~~dls~npi~dkvpih 184 (553)
T KOG4242|consen 165 PRARQHDLSPNPIGDKVPIH 184 (553)
T ss_pred chhhhhccCCCcccccCCcc
Confidence 44566666666665444433
No 93
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=32.34 E-value=31 Score=32.07 Aligned_cols=10 Identities=20% Similarity=0.331 Sum_probs=3.9
Q ss_pred HHHhhhhccc
Q 001719 978 IIGVLCINPY 987 (1021)
Q Consensus 978 ~~~~l~~~~~ 987 (1021)
++++.++.++
T Consensus 16 ~~~~~~~~rR 25 (130)
T PF12273_consen 16 LFLFYCHNRR 25 (130)
T ss_pred HHHHHHHHHH
Confidence 3333344333
No 94
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=26.80 E-value=48 Score=38.16 Aligned_cols=15 Identities=27% Similarity=0.206 Sum_probs=8.7
Q ss_pred CCCCEEECCCCcCCC
Q 001719 496 SGLMDLNLSRNAFNG 510 (1021)
Q Consensus 496 ~~L~~L~L~~n~l~~ 510 (1021)
..|++|.+.+|.+..
T Consensus 270 l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 270 LPLEELVLEGNPLCT 284 (585)
T ss_pred CCHHHeeecCCcccc
Confidence 345666666666553
No 95
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=22.31 E-value=50 Score=45.76 Aligned_cols=32 Identities=25% Similarity=0.295 Sum_probs=25.2
Q ss_pred EcccceecCcCcccccCCCCCCEEEcCCCcCc
Q 001719 823 DLSCNKLTGEIPTQIGYLTRIRALNLSHNNLT 854 (1021)
Q Consensus 823 ~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~ 854 (1021)
||++|+|+..-+..|..+.+|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 57888888555566778888888888888776
No 96
>PF15102 TMEM154: TMEM154 protein family
Probab=22.08 E-value=71 Score=29.90 Aligned_cols=21 Identities=10% Similarity=0.192 Sum_probs=8.5
Q ss_pred hhHHHHHHHHHHhhhhccccc
Q 001719 969 VSYGIVIIGIIGVLCINPYWR 989 (1021)
Q Consensus 969 ~~~~~~~~~~~~~l~~~~~~~ 989 (1021)
+.++++++.+++++.+.+|||
T Consensus 66 VLLvlLLl~vV~lv~~~kRkr 86 (146)
T PF15102_consen 66 VLLVLLLLSVVCLVIYYKRKR 86 (146)
T ss_pred HHHHHHHHHHHHheeEEeecc
Confidence 333333333444444444444
No 97
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=21.93 E-value=65 Score=20.00 Aligned_cols=11 Identities=55% Similarity=0.610 Sum_probs=5.8
Q ss_pred CCCCEEeCCCC
Q 001719 184 SNLEELDMSYN 194 (1021)
Q Consensus 184 ~~L~~L~Ls~n 194 (1021)
++|++|+|++|
T Consensus 2 ~~L~~L~l~~C 12 (26)
T smart00367 2 PNLRELDLSGC 12 (26)
T ss_pred CCCCEeCCCCC
Confidence 44555555555
No 98
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=20.90 E-value=57 Score=28.39 Aligned_cols=16 Identities=38% Similarity=0.781 Sum_probs=6.3
Q ss_pred hhhHHHHHHHHHHhhh
Q 001719 968 TVSYGIVIIGIIGVLC 983 (1021)
Q Consensus 968 ~~~~~~~~~~~~~~l~ 983 (1021)
+++.++++.+++++++
T Consensus 72 ~vg~~~~v~~lv~~l~ 87 (96)
T PTZ00382 72 SVAVVAVVGGLVGFLC 87 (96)
T ss_pred EeehhhHHHHHHHHHh
Confidence 3333333333444444
Done!