Query 001719
Match_columns 1021
No_of_seqs 605 out of 5888
Neff 9.7
Searched_HMMs 29240
Date Tue Mar 26 22:18:59 2013
Command hhsearch -i /local_scratch/syshi/lefta3m2/001719.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H2_40-44//hhsearch_pdb/001719hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 1.0 1 1 769.5 52.9 747 24-944 6-757 (768)
2 3rgz_A Protein brassinosteroid 1.0 1 1 616.5 42.4 658 107-927 50-718 (768)
3 1ziw_A TOLL-like receptor 3; i 1.0 1 1 497.9 50.1 586 107-931 25-627 (680)
4 1ziw_A TOLL-like receptor 3; i 1.0 1 1 486.8 51.4 579 75-906 24-626 (680)
5 3j0a_A TOLL-like receptor 5; m 1.0 1 1 461.2 42.9 296 547-931 268-565 (844)
6 3j0a_A TOLL-like receptor 5; m 1.0 1 1 443.3 41.4 325 496-939 266-592 (844)
7 3t6q_A CD180 antigen; protein- 1.0 1 1 440.8 45.8 133 108-249 34-166 (606)
8 3t6q_A CD180 antigen; protein- 1.0 1 1 438.8 42.9 111 135-250 33-143 (606)
9 3vq2_A TLR4, TOLL-like recepto 1.0 1 1 430.4 39.2 137 107-252 32-169 (606)
10 4eco_A Uncharacterized protein 1.0 1 1 423.1 20.7 109 818-930 514-630 (636)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=769.49 Aligned_cols=747 Identities=30% Similarity=0.415 Sum_probs=404.0
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEECEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf 26771999999998634089995348820035899999850110168429979289975699622135556676675235
Q 001719 24 IEGCLEQERSALLQLKHFFNDDQRLQNWVDAADDENYSDCCQWERVECNKTTGRVIKLDLGDIKNRKNRKSERHLNASLF 103 (1021)
Q Consensus 24 ~~~c~~~~~~all~~k~~~~~~~~l~~w~~~~~~~~~~~~c~w~gv~c~~~~~~v~~l~l~~~~~~~~~~~~~~~~~~~~ 103 (1021)
+..+.++||+|||+||+++.|+..+++|+. ++|||+|+||+|+ +|||++++|++..+ .|....-+..+
T Consensus 6 ~~~~~~~~~~all~~k~~~~~~~~l~~W~~------~~~~C~w~gv~C~--~~~v~~L~L~~~~l----~g~~~~l~~~l 73 (768)
T 3rgz_A 6 PSQSLYREIHQLISFKDVLPDKNLLPDWSS------NKNPCTFDGVTCR--DDKVTSIDLSSKPL----NVGFSAVSSSL 73 (768)
T ss_dssp --CCHHHHHHHHHHHHTTCSCTTSSTTCCT------TSCGGGSTTEEEE--TTEEEEEECTTSCC----CEEHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCCCCCCC------CCCCCCCCCEEEC--CCCEEEEECCCCCC----CCCCCCCCHHH
T ss_conf 566878999999999966789621468789------9987688413878--99278987789986----77557669657
Q ss_pred CCCCCCCEEECCCCCCCCCCCCCHHHHCCCCCCCCEEECCCCCCCCCCCC--CCCCCCCCCEEECCCCCCCCCCCHHCCC
Q ss_conf 68989988969898779854520111016999997996989878973321--4789999989976983144445910028
Q 001719 104 TPFQQLESLDLSWNNIAGCVENEGVERLSRLNNLKFLLLDSNYFNNSIFS--SLGGLSSLRILSLADNRLNGSIDIKGLD 181 (1021)
Q Consensus 104 ~~~~~L~~LdLs~n~i~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~--~l~~l~~L~~L~Ls~n~l~~~i~~~~l~ 181 (1021)
..+++|+.++++.+.+...+ ..+.++++|++|++++|.+.+.+|. .++++++|++|++++|.+.+.+|...+.
T Consensus 74 ~~L~~L~~l~~~~~~~~~l~-----~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~ 148 (768)
T 3rgz_A 74 LSLTGLESLFLSNSHINGSV-----SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGL 148 (768)
T ss_dssp TTCTTCCEEECTTSCEEECC-----CCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCC
T ss_pred HCCCCCCCCCCCCCCCCCCC-----HHHCCCCCCCEEECCCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHC
T ss_conf 31680224678688867870-----3324578899898989857870789678727889998989688267747977856
Q ss_pred CCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 99999899599987999887310001379999897888899798863000039999878975896374434566765443
Q 001719 182 SLSNLEELDMSYNAIDNLVVPQGLERLSTLSNLKFLRLDYNSFNSSIFSSLGGLSSLRILSLADNRFNGSIDIKGKQASS 261 (1021)
Q Consensus 182 ~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~ 261 (1021)
++++|++|++++|.+.+..+. ....+.++++|++|++++|.+.+..+ +..+++|++|++++|.+.+.+|
T Consensus 149 ~l~~L~~L~Ls~n~l~~~~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~~~~-------- 217 (768)
T 3rgz_A 149 KLNSLEVLDLSANSISGANVV-GWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIP-------- 217 (768)
T ss_dssp CCTTCSEEECCSSCCEEETHH-HHHHTTCCTTCCEEECCSSEEESCCB--CTTCTTCCEEECCSSCCCSCCC--------
T ss_pred CCCCCCEEECCCCCCCCCCCH-HHHHHCCCCCCCEEECCCCCCCCCCC--CCCCCCCCEEECCCCCCCCCCC--------
T ss_conf 388999898979835885871-55664358988989897880346578--4547868989892882788771--------
Q ss_pred CCCCCCCCCEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 35677534243057876778878889899983208988779976781334210234123688312367643222489999
Q 001719 262 ILRVPSFVDLVSLSSWSVGINTGLDSLSNLEELDMTNNAINNLVVPKDYRCLRKLNTLYLGGIAMIDGSKVLQSIGSLPS 341 (1021)
Q Consensus 262 ~~~~~~~l~~l~l~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~ 341 (1021)
.+.++++|++|++++|.+++ .+| ..++.+++
T Consensus 218 ----------------------~l~~l~~L~~L~Ls~n~l~~-~~~--------------------------~~l~~l~~ 248 (768)
T 3rgz_A 218 ----------------------FLGDCSALQHLDISGNKLSG-DFS--------------------------RAISTCTE 248 (768)
T ss_dssp ----------------------BCTTCCSCCEEECCSSCCCS-CHH--------------------------HHTTTCSS
T ss_pred ----------------------CCCCCCCCCEEECCCCCCCC-CCC--------------------------HHHHCCCC
T ss_conf ----------------------11269999989794885878-165--------------------------77744888
Q ss_pred CCEEECCCCCCCCCCCCHHHHCCCCCCEEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCHHHCCC
Q ss_conf 97897457531001183222068987648711664332232343306986449984481303555689999956110089
Q 001719 342 LKTLYLLFTNFKGTIVNQELHNFTNLEELLLVKSDLHVSQLLQSIASFTSLKYLSIRGCVLKGALHGQDGGTFPKFLYHQ 421 (1021)
Q Consensus 342 L~~L~Ls~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~p~~l~~l 421 (1021)
|++|++++|.+.+.+ +.. .+++|++|++++|.+.+.++......+++|++|++++|.+. +.+|..+..+
T Consensus 249 L~~L~Ls~n~l~~~~-~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~--------~~~p~~~~~l 317 (768)
T 3rgz_A 249 LKLLNISSNQFVGPI-PPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFY--------GAVPPFFGSC 317 (768)
T ss_dssp CCEEECCSSCCEESC-CCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEE--------ECCCGGGGGC
T ss_pred CCEEECCCCCCCCCC-CCC--CCCCCCEEECCCCCCCCCCCHHHHHHCCCCCEEECCCCCCC--------CCCCHHHHCC
T ss_conf 898989888665716-724--36878989791785577258888844686889989689677--------8423677558
Q ss_pred CCCCEEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCC-CCCEEECCCCCCCCCCCHHHHHC-CCCCC
Q ss_conf 98589990288565678746763399988998768868888866856999-84899868997875664255416-99997
Q 001719 422 HDLKNVDLSHLNLSGKFPNWLVENNTNLKTLLLANNSLFGSFRMPIHSHQ-KLATLDVSTNFFRGHIPVEIGTY-LSGLM 499 (1021)
Q Consensus 422 ~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~~-l~~L~ 499 (1021)
++|++|++++|.+.+.+|...+..+++|+.|++++|.+.+..+..+..++ +|+.|++++|.+.+.+|..++.. +++|+
T Consensus 318 ~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~ 397 (768)
T 3rgz_A 318 SLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQ 397 (768)
T ss_dssp TTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCC
T ss_pred CCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHHHHCCCCEEECCCCCCCCCCCHHHHHCCCCCCC
T ss_conf 77667789788525737978872488887884847843762309898632277199862787478767666533247761
Q ss_pred EEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCC
Q ss_conf 89887886887777001299998899767875898640466514998749987898666445643348998658982488
Q 001719 500 DLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGEIPDRMAIGCFSLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGN 579 (1021)
Q Consensus 500 ~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 579 (1021)
+|++++|.+++.+|..+..+++|+.|++++|.+++.+|..+. .+++|+.|++++|.+.+.+|..+..+++|+.|++++|
T Consensus 398 ~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~-~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N 476 (768)
T 3rgz_A 398 ELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLG-SLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFN 476 (768)
T ss_dssp EEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGG-GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSS
T ss_pred EEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHH-CCCCCCEEECCCCCCCCCCCHHHCCCCCCEEEEECCC
T ss_conf 898977846542487775689879898958846685467774-4998898989788154718978828777329990199
Q ss_pred CCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCC
Q ss_conf 46565884323557557698428859996124420898776898788966677530003999997997648706557899
Q 001719 580 KFIGEIPKSLSKCYLLGGLYLSDNHLSGKIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLDYLKILDLSNNTIFGTLPS 659 (1021)
Q Consensus 580 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~ 659 (1021)
.+.+.+|..+.++++|+.|++++|++.+.+|.++..+++|+.|++++|.+.+.+|..+..+++|+.|++++|++.+.+|.
T Consensus 477 ~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~ 556 (768)
T 3rgz_A 477 DLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPA 556 (768)
T ss_dssp CCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCG
T ss_pred CCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCH
T ss_conf 51375887881699899897539951896876885689999898978943374887770889899898988846882795
Q ss_pred CC-CCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 87-98960199842772565560444238565689743773588878001699997678741561542378011499887
Q 001719 660 CF-SPAYIEEIHLSKNKIEGRLESIIHYSPYLMTLDLSYNCLHGSIPTWIDRLPQLSYLLLANNYIEGEIPIQICQLKEV 738 (1021)
Q Consensus 660 ~~-~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L 738 (1021)
.+ ....+..+.+.. ..+...+.++.... ........ -.+.+..+..+..+..+
T Consensus 557 ~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~--------~~~~~~~~---~~~~~~~~~~~~~l~~~ 610 (768)
T 3rgz_A 557 AMFKQSGKIAANFIA---------------GKRYVYIKNDGMKK--------ECHGAGNL---LEFQGIRSEQLNRLSTR 610 (768)
T ss_dssp GGGTTTTCBCCSTTC---------------SCEEEEEECCSCCT--------TCCSSEEE---EECTTCCGGGGGGGGGT
T ss_pred HHHCCCCHHHHHCCC---------------CCCCCCCCCCCCCC--------CCCCCCCC---CCCCCCCCHHHHCCCCC
T ss_conf 786042122320134---------------54211113444322--------22332221---00135563232002321
Q ss_pred CEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCC
Q ss_conf 88966688385569943101433445443445667898887554358989999999875317886237521111110245
Q 001719 739 RLIDLSHNNLSGHIPPCLVNTALNEGYHEAVAPISSSSDDASTYVLPSVAPNGSPIGEEETVQFTTKNMSYYYQGRILMS 818 (1021)
Q Consensus 739 ~~L~Ls~N~l~g~ip~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 818 (1021)
..++++.|.+.|.+|..+..+ ..
T Consensus 611 ~~~~l~~~~~~g~~~~~~~~l---------------------------------------------------------~~ 633 (768)
T 3rgz_A 611 NPCNITSRVYGGHTSPTFDNN---------------------------------------------------------GS 633 (768)
T ss_dssp CCSCTTSCEEEEECCCSCSSS---------------------------------------------------------BC
T ss_pred CCCCCCCCEECCCCCHHHHCC---------------------------------------------------------CC
T ss_conf 100113310046274334033---------------------------------------------------------56
Q ss_pred CCEEECCCCEECCCCCCCCCCCCCCCEEECCCCCCCCCHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCC
Q ss_conf 54799112420586920125887798897678967543000013888888886868628777981232699998898108
Q 001719 819 MSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLLGKIPPQLIVLNTLAVFRVAN 898 (1021)
Q Consensus 819 L~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~ 898 (1021)
++.||+++|+++|.+|.+++.++.|+.|+|++|.++|.+|..++++++|+.||||+|+++|.+|..+..+++|++|++++
T Consensus 634 L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~ 713 (768)
T 3rgz_A 634 MMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSN 713 (768)
T ss_dssp CCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCS
T ss_pred CCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCC
T ss_conf 65797858801555877884141578784868803887896784777899898978802386886775788789787968
Q ss_pred CCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 8010028985323578874434476688898998998999998889
Q 001719 899 NNLSGKIPDRVAQFSTFEEDSYEGNPFLCGLPLSKSCDDNGLTTAT 944 (1021)
Q Consensus 899 N~l~g~~p~~~~~~~~l~~~~~~gNp~lC~~~l~~~c~~~~~~~~~ 944 (1021)
|+++|.+|.+ +++.++...+|.|||++||.|+. .|.......+.
T Consensus 714 N~l~g~iP~~-~~~~~~~~~~~~gN~~Lcg~~l~-~C~~~~~~~~~ 757 (768)
T 3rgz_A 714 NNLSGPIPEM-GQFETFPPAKFLNNPGLCGYPLP-RCDPSNADGYA 757 (768)
T ss_dssp SEEEEECCSS-SSGGGSCGGGGCSCTEEESTTSC-CCCSCC-----
T ss_pred CCCCCCCCCC-HHHCCCCHHHHCCCCHHCCCCCC-CCCCCCCCCCC
T ss_conf 8155608996-01024897775698321088776-78887668889
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=616.46 Aligned_cols=658 Identities=26% Similarity=0.379 Sum_probs=392.7
Q ss_pred CCCCEEECCCCCCCCC---CCCCHHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCH-HCCCC
Q ss_conf 8998896989877985---4520111016999997996989878973321478999998997698314444591-00289
Q 001719 107 QQLESLDLSWNNIAGC---VENEGVERLSRLNNLKFLLLDSNYFNNSIFSSLGGLSSLRILSLADNRLNGSIDI-KGLDS 182 (1021)
Q Consensus 107 ~~L~~LdLs~n~i~~~---~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~-~~l~~ 182 (1021)
.+++.|||+++.+.+. .+ .++.++++|+.++++.+.+. .++..++++++|++|+|++|.+.|.+|. ..+++
T Consensus 50 ~~v~~L~L~~~~l~g~~~~l~----~~l~~L~~L~~l~~~~~~~~-~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~ 124 (768)
T 3rgz_A 50 DKVTSIDLSSKPLNVGFSAVS----SSLLSLTGLESLFLSNSHIN-GSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGS 124 (768)
T ss_dssp TEEEEEECTTSCCCEEHHHHH----HHTTTCTTCCEEECTTSCEE-ECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGG
T ss_pred CCEEEEECCCCCCCCCCCCCC----HHHHCCCCCCCCCCCCCCCC-CCCHHHCCCCCCCEEECCCCCCCCCCCCHHHHHC
T ss_conf 927898778998677557669----65731680224678688867-8703324578899898989857870789678727
Q ss_pred CCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHH---CCCCCCCCEEECCCCCCCCCCCCCCCCC
Q ss_conf 9999899599987999887310001379999897888899798863000---0399998789758963744345667654
Q 001719 183 LSNLEELDMSYNAIDNLVVPQGLERLSTLSNLKFLRLDYNSFNSSIFSS---LGGLSSLRILSLADNRFNGSIDIKGKQA 259 (1021)
Q Consensus 183 l~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~---l~~l~~L~~L~Ls~n~l~~~~p~~~~~~ 259 (1021)
+++|++|++++|.+.+..+.. .+.++++|++|++++|.+++..+.. +.++++|++|++++|.+.+.+|
T Consensus 125 l~~L~~L~Ls~n~l~~~~~~~---~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~------ 195 (768)
T 3rgz_A 125 CSGLKFLNVSSNTLDFPGKVS---GGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD------ 195 (768)
T ss_dssp CTTCCEEECCSSEEECCSSCC---SCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB------
T ss_pred CCCCCEEECCCCCCCCCCCHH---HHCCCCCCCEEECCCCCCCCCCCHHHHHHCCCCCCCEEECCCCCCCCCCC------
T ss_conf 889998989688267747977---85638899989897983588587155664358988989897880346578------
Q ss_pred CCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 43356775342430578767788788898999832089887799767813342102341236883123676432224899
Q 001719 260 SSILRVPSFVDLVSLSSWSVGINTGLDSLSNLEELDMTNNAINNLVVPKDYRCLRKLNTLYLGGIAMIDGSKVLQSIGSL 339 (1021)
Q Consensus 260 ~~~~~~~~~l~~l~l~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l 339 (1021)
+..+++|++|++++|.+.+ .+| . ++.+
T Consensus 196 -------------------------~~~l~~L~~L~Ls~n~l~~-~~~--------------------------~-l~~l 222 (768)
T 3rgz_A 196 -------------------------VSRCVNLEFLDVSSNNFST-GIP--------------------------F-LGDC 222 (768)
T ss_dssp -------------------------CTTCTTCCEEECCSSCCCS-CCC--------------------------B-CTTC
T ss_pred -------------------------CCCCCCCCEEECCCCCCCC-CCC--------------------------C-CCCC
T ss_conf -------------------------4547868989892882788-771--------------------------1-1269
Q ss_pred CCCCEEECCCCCCCCCCCCHHHHCCCCCCEEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCHHHC
Q ss_conf 99978974575310011832220689876487116643322323433069864499844813035556899999561100
Q 001719 340 PSLKTLYLLFTNFKGTIVNQELHNFTNLEELLLVKSDLHVSQLLQSIASFTSLKYLSIRGCVLKGALHGQDGGTFPKFLY 419 (1021)
Q Consensus 340 ~~L~~L~Ls~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~p~~l~ 419 (1021)
++|++|++++|.+.+.+ +..+.++++|++|++++|.+.+..+. .
T Consensus 223 ~~L~~L~Ls~n~l~~~~-~~~l~~l~~L~~L~Ls~n~l~~~~~~---------------------------------~-- 266 (768)
T 3rgz_A 223 SALQHLDISGNKLSGDF-SRAISTCTELKLLNISSNQFVGPIPP---------------------------------L-- 266 (768)
T ss_dssp CSCCEEECCSSCCCSCH-HHHTTTCSSCCEEECCSSCCEESCCC---------------------------------C--
T ss_pred CCCCEEECCCCCCCCCC-CHHHHCCCCCCEEECCCCCCCCCCCC---------------------------------C--
T ss_conf 99998979488587816-57774488889898988866571672---------------------------------4--
Q ss_pred CCCCCCEEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCC
Q ss_conf 89985899902885656787467633999889987688688888668569998489986899787566425541699997
Q 001719 420 HQHDLKNVDLSHLNLSGKFPNWLVENNTNLKTLLLANNSLFGSFRMPIHSHQKLATLDVSTNFFRGHIPVEIGTYLSGLM 499 (1021)
Q Consensus 420 ~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~ 499 (1021)
.+++|++|++++|.+.+.+|..+...+++|+.|++++|.+.+
T Consensus 267 ~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~-------------------------------------- 308 (768)
T 3rgz_A 267 PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYG-------------------------------------- 308 (768)
T ss_dssp CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEE--------------------------------------
T ss_pred CCCCCCEEECCCCCCCCCCCHHHHHHCCCCCEEECCCCCCCC--------------------------------------
T ss_conf 368789897917855772588888446868899896896778--------------------------------------
Q ss_pred EEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCC-CCCEEECCC
Q ss_conf 8988788688777700129999889976787589864046651499874998789866644564334899-865898248
Q 001719 500 DLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGEIPDRMAIGCFSLEILALSNNNLQGHIFSKKFNLT-NLMRLQLDG 578 (1021)
Q Consensus 500 ~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~ 578 (1021)
.+|..|..+++|++|++++|.+++.+|...+..+++|++|++++|.+.+.+|..+..++ +|+.|++++
T Consensus 309 -----------~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~ 377 (768)
T 3rgz_A 309 -----------AVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSS 377 (768)
T ss_dssp -----------CCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCS
T ss_pred -----------CCCHHHHCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHHHHCCCCEEECCC
T ss_conf -----------423677558776677897885257379788724888878848478437623098986322771998627
Q ss_pred CCCCCCCCCCCCC--CCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCC
Q ss_conf 8465658843235--57557698428859996124420898776898788966677530003999997997648706557
Q 001719 579 NKFIGEIPKSLSK--CYLLGGLYLSDNHLSGKIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLDYLKILDLSNNTIFGT 656 (1021)
Q Consensus 579 n~l~~~~~~~l~~--l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 656 (1021)
|.+.+.++..+.. ++.|+.|++++|.+++.+|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+.+.
T Consensus 378 N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ 457 (768)
T 3rgz_A 378 NNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGE 457 (768)
T ss_dssp SEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSC
T ss_pred CCCCCCCCHHHHHCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCC
T ss_conf 87478767666533247761898977846542487775689879898958846685467774499889898978815471
Q ss_pred CCCCC-CCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCC
Q ss_conf 89987-98960199842772565560444238565689743773588878001699997678741561542378011499
Q 001719 657 LPSCF-SPAYIEEIHLSKNKIEGRLESIIHYSPYLMTLDLSYNCLHGSIPTWIDRLPQLSYLLLANNYIEGEIPIQICQL 735 (1021)
Q Consensus 657 ~p~~~-~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l 735 (1021)
+|..+ .+++|+.|++++|.+.+..|..+..+++|+.|++++|++++.+|.+++.+++|++|++++|++++.+|..+..+
T Consensus 458 ~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l 537 (768)
T 3rgz_A 458 IPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDC 537 (768)
T ss_dssp CCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGC
T ss_pred CCHHHCCCCCCEEEEECCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHCCC
T ss_conf 89788287773299901995137588788169989989753995189687688568999989897894337488777088
Q ss_pred CCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCC
Q ss_conf 88788966688385569943101433445443445667898887554358989999999875317886237521111110
Q 001719 736 KEVRLIDLSHNNLSGHIPPCLVNTALNEGYHEAVAPISSSSDDASTYVLPSVAPNGSPIGEEETVQFTTKNMSYYYQGRI 815 (1021)
Q Consensus 736 ~~L~~L~Ls~N~l~g~ip~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 815 (1021)
++|+.|++++|+++|.+|.++....-...... .......+..... ......... ......+.. ......
T Consensus 538 ~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~-------~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~-~~~~~~ 606 (768)
T 3rgz_A 538 RSLIWLDLNTNLFNGTIPAAMFKQSGKIAANF-------IAGKRYVYIKNDG-MKKECHGAG--NLLEFQGIR-SEQLNR 606 (768)
T ss_dssp TTCCEEECCSSEEESBCCGGGGTTTTCBCCST-------TCSCEEEEEECCS-CCTTCCSSE--EEEECTTCC-GGGGGG
T ss_pred CCCCEEECCCCCCCCCCCHHHHCCCCHHHHHC-------CCCCCCCCCCCCC-CCCCCCCCC--CCCCCCCCC-CHHHHC
T ss_conf 98998989888468827957860421223201-------3454211113444-322223322--210013556-323200
Q ss_pred CCCCCEEECCCCEECCCCCCCCCCCCCCCEEECCCCCCCCCHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 24554799112420586920125887798897678967543000013888888886868628777981232699998898
Q 001719 816 LMSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLLGKIPPQLIVLNTLAVFR 895 (1021)
Q Consensus 816 ~~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ 895 (1021)
+..+..++++.|.+.|.+|..+..++.|+.|||++|+++|.+|..++++++|+.|+|++|+++|.||.++.+++.|+.||
T Consensus 607 l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~Ld 686 (768)
T 3rgz_A 607 LSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILD 686 (768)
T ss_dssp GGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEE
T ss_pred CCCCCCCCCCCCEECCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEE
T ss_conf 23211001133100462743340335665797858801555877884141578784868803887896784777899898
Q ss_pred CCCCCCEECCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 10880100289853235788744344766888
Q 001719 896 VANNNLSGKIPDRVAQFSTFEEDSYEGNPFLC 927 (1021)
Q Consensus 896 ls~N~l~g~~p~~~~~~~~l~~~~~~gNp~lC 927 (1021)
+++|+++|.+|..+..++.++.+++++|+...
T Consensus 687 Ls~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g 718 (768)
T 3rgz_A 687 LSSNKLDGRIPQAMSALTMLTEIDLSNNNLSG 718 (768)
T ss_dssp CCSSCCEECCCGGGGGCCCCSEEECCSSEEEE
T ss_pred CCCCCCCCCCCHHHHCCCCCCEEECCCCCCCC
T ss_conf 97880238688677578878978796881556
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=1.00 E-value=1 Score=497.87 Aligned_cols=586 Identities=23% Similarity=0.189 Sum_probs=308.5
Q ss_pred CCCCEEECCCCCCCCCCCCCHHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHCCCCCCCC
Q ss_conf 89988969898779854520111016999997996989878973321478999998997698314444591002899999
Q 001719 107 QQLESLDLSWNNIAGCVENEGVERLSRLNNLKFLLLDSNYFNNSIFSSLGGLSSLRILSLADNRLNGSIDIKGLDSLSNL 186 (1021)
Q Consensus 107 ~~L~~LdLs~n~i~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~l~~l~~L 186 (1021)
+++++|++++|.+.+.++ ..+.++++|++|++++|.+.+..+..++++++|++|++++|.+. .+|...|+++++|
T Consensus 25 ~~l~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L 99 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPA----ANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS-QLSDKTFAFCTNL 99 (680)
T ss_dssp TTCSEEECCSSCCCCCCG----GGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCC-CCCTTTTTTCTTC
T ss_pred CCCCEEECCCCCCCCCCH----HHHHCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCC-CCCHHHHCCCCCC
T ss_conf 887688898997787597----88717876758878899648569778740667688889998567-5685453038888
Q ss_pred CEEECCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 89959998799988731000137999989788889979886300003999987897589637443456676544335677
Q 001719 187 EELDMSYNAIDNLVVPQGLERLSTLSNLKFLRLDYNSFNSSIFSSLGGLSSLRILSLADNRFNGSIDIKGKQASSILRVP 266 (1021)
Q Consensus 187 ~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~~~~~ 266 (1021)
++|++++|.+....+. .+.++++|++|++++|.+.+..+..++++++|++|++++|.+.+..+...
T Consensus 100 ~~L~L~~n~l~~~~~~----~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~---------- 165 (680)
T 1ziw_A 100 TELHLMSNSIQKIKNN----PFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEEL---------- 165 (680)
T ss_dssp SEEECCSSCCCCCCSC----TTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHH----------
T ss_pred CEEECCCCCCCCCCHH----HCCCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCHHHH----------
T ss_conf 9898989966853966----74156788889898995246672111245567779745884365297886----------
Q ss_pred CCCCEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 53424305787677887888989998320898877997678133421023412368831236764322248999997897
Q 001719 267 SFVDLVSLSSWSVGINTGLDSLSNLEELDMTNNAINNLVVPKDYRCLRKLNTLYLGGIAMIDGSKVLQSIGSLPSLKTLY 346 (1021)
Q Consensus 267 ~~l~~l~l~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~ 346 (1021)
....+++|+.|++++|.+++
T Consensus 166 -----------------~~~~~~~L~~L~L~~n~l~~------------------------------------------- 185 (680)
T 1ziw_A 166 -----------------DIFANSSLKKLELSSNQIKE------------------------------------------- 185 (680)
T ss_dssp -----------------GGGTTCEESEEECTTCCCCC-------------------------------------------
T ss_pred -----------------HCCCCCCCCEEECCCCCCCC-------------------------------------------
T ss_conf -----------------24466632179888982565-------------------------------------------
Q ss_pred CCCCCCCCCCCCHHHHCCCCCCEEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCHHHCCCCCCCE
Q ss_conf 45753100118322206898764871166433223234330698644998448130355568999995611008998589
Q 001719 347 LLFTNFKGTIVNQELHNFTNLEELLLVKSDLHVSQLLQSIASFTSLKYLSIRGCVLKGALHGQDGGTFPKFLYHQHDLKN 426 (1021)
Q Consensus 347 Ls~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~p~~l~~l~~L~~ 426 (1021)
.. +..+..+++|+.+++.++.+...... .+ +..+ ..++|+.
T Consensus 186 --------~~-~~~~~~l~~L~~L~l~~~~l~~~~~~-~~----------------------------~~~l-~~~~L~~ 226 (680)
T 1ziw_A 186 --------FS-PGCFHAIGRLFGLFLNNVQLGPSLTE-KL----------------------------CLEL-ANTSIRN 226 (680)
T ss_dssp --------BC-TTGGGGSSEECEEECTTCCCHHHHHH-HH----------------------------HHHH-TTSCCCE
T ss_pred --------CC-HHHHHHHHHHHHHHCCCCCCCHHHHH-HH----------------------------HHHH-HHCCCCE
T ss_conf --------58-15553223445543056646805677-78----------------------------7775-3151008
Q ss_pred EEECCCCCCCCCCHHHHHCCC--CCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECC
Q ss_conf 990288565678746763399--988998768868888866856999848998689978756642554169999789887
Q 001719 427 VDLSHLNLSGKFPNWLVENNT--NLKTLLLANNSLFGSFRMPIHSHQKLATLDVSTNFFRGHIPVEIGTYLSGLMDLNLS 504 (1021)
Q Consensus 427 L~Ls~n~l~~~~p~~~~~~l~--~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~ 504 (1021)
|++++|.+.+..|.. +..++ +|+.|++++|.+.+..+..+.. +++|++|+++
T Consensus 227 L~L~~n~l~~~~~~~-~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~-------------------------l~~L~~L~L~ 280 (680)
T 1ziw_A 227 LSLSNSQLSTTSNTT-FLGLKWTNLTMLDLSYNNLNVVGNDSFAW-------------------------LPQLEYFFLE 280 (680)
T ss_dssp EECTTSCCCEECTTT-TGGGGGSCCCEEECTTSCCCEECTTTTTT-------------------------CTTCCEEECC
T ss_pred EECCCCCCCCCCHHH-HHCCCCCCCCEEECCCCCCCCCCCCCCCC-------------------------CCCCCEEECC
T ss_conf 874577436468667-51467677888778788767568021167-------------------------4105685577
Q ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCC--------HHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEC
Q ss_conf 886887777001299998899767875898640--------466514998749987898666445643348998658982
Q 001719 505 RNAFNGSIPSSFADMKMLKSLDISYNQLTGEIP--------DRMAIGCFSLEILALSNNNLQGHIFSKKFNLTNLMRLQL 576 (1021)
Q Consensus 505 ~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~i~--------~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 576 (1021)
+|.+.+..|..|..+++|+.|++++|...+.++ ...+..+++|+.|++++|.+.+..+..+.++++|++|++
T Consensus 281 ~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 360 (680)
T 1ziw_A 281 YNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSL 360 (680)
T ss_dssp SCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCCCCCHHHHCCCCCCCEEECCCHHHHCCCCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEEC
T ss_conf 88567658656267888557736331321333335545438656246777888879898268788557406568728988
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHC--CCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCC
Q ss_conf 48846565884323557557698428859996124420--8987768987889666775300039999979976487065
Q 001719 577 DGNKFIGEIPKSLSKCYLLGGLYLSDNHLSGKIPRWLG--NLSALEDIIMPNNNLEGPIPIEFCQLDYLKILDLSNNTIF 654 (1021)
Q Consensus 577 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~--~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 654 (1021)
++|.+... ...+..+. ..++|+.|++++|.+.+..|..|..+++|+.|++++|.+.
T Consensus 361 s~n~~~~~----------------------~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 418 (680)
T 1ziw_A 361 SNSFTSLR----------------------TLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIG 418 (680)
T ss_dssp TTCBSCCC----------------------EECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCE
T ss_pred CCCCHHHH----------------------HCCHHHHCCCCCCCCCEEECCCCCCCEECHHHHHCCCCCCEEECCCCCCC
T ss_conf 79801443----------------------23532202455686766889999777677544207788888867787575
Q ss_pred CCCCC-CC-CCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCC--CCCCCCCCCCCCCCEEECCCCCCCCCCCC
Q ss_conf 57899-87-9896019984277256556044423856568974377358--88780016999976787415615423780
Q 001719 655 GTLPS-CF-SPAYIEEIHLSKNKIEGRLESIIHYSPYLMTLDLSYNCLH--GSIPTWIDRLPQLSYLLLANNYIEGEIPI 730 (1021)
Q Consensus 655 ~~~p~-~~-~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~N~l~--~~~p~~~~~l~~L~~L~L~~n~l~~~~p~ 730 (1021)
+.+|. .+ .+++|+.|++++|.+.+..+..|..+++|+.|++++|.+. +..|..+..+++|+.|++++|++++..+.
T Consensus 419 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~ 498 (680)
T 1ziw_A 419 QELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDD 498 (680)
T ss_dssp EECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred CCCCCCCCCCCCCCCEEECCCCCCCEECHHHHHCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHH
T ss_conf 43575532575461278448997542276455007543101101464422566776455578789998999987767944
Q ss_pred CCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCC
Q ss_conf 11499887889666883855699431014334454434456678988875543589899999998753178862375211
Q 001719 731 QICQLKEVRLIDLSHNNLSGHIPPCLVNTALNEGYHEAVAPISSSSDDASTYVLPSVAPNGSPIGEEETVQFTTKNMSYY 810 (1021)
Q Consensus 731 ~~~~l~~L~~L~Ls~N~l~g~ip~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 (1021)
.+..+++|+.|++++|++++..+..+
T Consensus 499 ~~~~l~~L~~L~Ls~N~l~~~~~~~~------------------------------------------------------ 524 (680)
T 1ziw_A 499 MLEGLEKLEILDLQHNNLARLWKHAN------------------------------------------------------ 524 (680)
T ss_dssp TTTTCTTCCEEECCSSCCGGGGSTTS------------------------------------------------------
T ss_pred HHCCCCCCCEEECCCCCCCCCCHHHC------------------------------------------------------
T ss_conf 63455346888588997300000004------------------------------------------------------
Q ss_pred CCCCCCCCCCEEECCCCEECCCCCCCCCCCCCCCEEECCCCCCCCCHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 11110245547991124205869201258877988976789675430000138888888868686287779812326999
Q 001719 811 YQGRILMSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLLGKIPPQLIVLNT 890 (1021)
Q Consensus 811 ~~~~~~~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~ 890 (1021)
.+..+..+..+++|+.|+|++|.++...+..|.++++|+.|+|++|++++..+..+..+++
T Consensus 525 -------------------~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~ 585 (680)
T 1ziw_A 525 -------------------PGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVS 585 (680)
T ss_dssp -------------------TTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred -------------------CCCCCHHHCCCCCCCEEECCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCHHHHCCCCC
T ss_conf -------------------6774142337998888889999788779777346667522389999777679768378988
Q ss_pred CCEEECCCCCCEECCCCCCC-CCCCCCCCCCCCCCCCCCCCC
Q ss_conf 98898108801002898532-357887443447668889899
Q 001719 891 LAVFRVANNNLSGKIPDRVA-QFSTFEEDSYEGNPFLCGLPL 931 (1021)
Q Consensus 891 L~~L~ls~N~l~g~~p~~~~-~~~~l~~~~~~gNp~lC~~~l 931 (1021)
|+.|++++|++++..|..+. .++++..+++.||||.|+|+.
T Consensus 586 L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~ 627 (680)
T 1ziw_A 586 LKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES 627 (680)
T ss_dssp CCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred CCEEECCCCCCCCCCHHHHCCCCCCCCEEECCCCCCCCCCCC
T ss_conf 888989999687059668301146657798318970257766
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=1.00 E-value=1 Score=486.76 Aligned_cols=579 Identities=22% Similarity=0.206 Sum_probs=359.6
Q ss_pred CCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCHHHHCCCCCCCCEEECCCCCCCCCCCCC
Q ss_conf 79289975699622135556676675235689899889698987798545201110169999979969898789733214
Q 001719 75 TGRVIKLDLGDIKNRKNRKSERHLNASLFTPFQQLESLDLSWNNIAGCVENEGVERLSRLNNLKFLLLDSNYFNNSIFSS 154 (1021)
Q Consensus 75 ~~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~n~i~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~ 154 (1021)
..+++.|+++++.+ ..+.+..|..+++|++|++++|.+.+..+ .++.++++|++|++++|.+....+..
T Consensus 24 ~~~l~~L~Ls~n~l-------~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~L~~n~l~~l~~~~ 92 (680)
T 1ziw_A 24 PTNITVLNLTHNQL-------RRLPAANFTRYSQLTSLDVGFNTISKLEP----ELCQKLPMLKVLNLQHNELSQLSDKT 92 (680)
T ss_dssp CTTCSEEECCSSCC-------CCCCGGGGGGGTTCSEEECCSSCCCCCCT----THHHHCTTCCEEECCSSCCCCCCTTT
T ss_pred CCCCCEEECCCCCC-------CCCCHHHHHCCCCCCEEECCCCCCCCCCH----HHHHCCCCCCEEECCCCCCCCCCHHH
T ss_conf 88876888989977-------87597887178767588788996485697----78740667688889998567568545
Q ss_pred CCCCCCCCEEECCCCCCCCCCCHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHCC-
Q ss_conf 7899999899769831444459100289999989959998799988731000137999989788889979886300003-
Q 001719 155 LGGLSSLRILSLADNRLNGSIDIKGLDSLSNLEELDMSYNAIDNLVVPQGLERLSTLSNLKFLRLDYNSFNSSIFSSLG- 233 (1021)
Q Consensus 155 l~~l~~L~~L~Ls~n~l~~~i~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~- 233 (1021)
|+++++|++|++++|.+. .++...|+++++|++|++++|.+.+..+. .+.++++|++|++++|.+++..+..+.
T Consensus 93 ~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 167 (680)
T 1ziw_A 93 FAFCTNLTELHLMSNSIQ-KIKNNPFVKQKNLITLDLSHNGLSSTKLG----TQVQLENLQELLLSNNKIQALKSEELDI 167 (680)
T ss_dssp TTTCTTCSEEECCSSCCC-CCCSCTTTTCTTCCEEECCSSCCSCCCCC----SSSCCTTCCEEECCSSCCCCBCHHHHGG
T ss_pred HCCCCCCCEEECCCCCCC-CCCHHHCCCCCCCCEEECCCCCCCCCCCH----HHCCCCCCCEEECCCCCCCCCCHHHHHC
T ss_conf 303888898989899668-53966741567888898989952466721----1124556777974588436529788624
Q ss_pred -CCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHHH
Q ss_conf -9999878975896374434566765443356775342430578767788788898999832089887799767813342
Q 001719 234 -GLSSLRILSLADNRFNGSIDIKGKQASSILRVPSFVDLVSLSSWSVGINTGLDSLSNLEELDMTNNAINNLVVPKDYRC 312 (1021)
Q Consensus 234 -~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~ 312 (1021)
.+++|++|++++|.+.+..|. .+..+++|+.++++++.+.. .. ...
T Consensus 168 ~~~~~L~~L~L~~n~l~~~~~~-----------------------------~~~~l~~L~~L~l~~~~l~~-~~---~~~ 214 (680)
T 1ziw_A 168 FANSSLKKLELSSNQIKEFSPG-----------------------------CFHAIGRLFGLFLNNVQLGP-SL---TEK 214 (680)
T ss_dssp GTTCEESEEECTTCCCCCBCTT-----------------------------GGGGSSEECEEECTTCCCHH-HH---HHH
T ss_pred CCCCCCCEEECCCCCCCCCCHH-----------------------------HHHHHHHHHHHHCCCCCCCH-HH---HHH
T ss_conf 4666321798889825655815-----------------------------55322344554305664680-56---777
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHHCCCC--CCEEEECCCCCCCCCCHHHHCCCC
Q ss_conf 102341236883123676432224899999789745753100118322206898--764871166433223234330698
Q 001719 313 LRKLNTLYLGGIAMIDGSKVLQSIGSLPSLKTLYLLFTNFKGTIVNQELHNFTN--LEELLLVKSDLHVSQLLQSIASFT 390 (1021)
Q Consensus 313 l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~l~~l~~--L~~L~L~~n~~~~~~~~~~l~~l~ 390 (1021)
+. ..+ ..++|+.|++++|.+.+.. +..+.+++. |++|++++|
T Consensus 215 ~~-------------------~~l-~~~~L~~L~L~~n~l~~~~-~~~~~~l~~~~L~~L~Ls~n--------------- 258 (680)
T 1ziw_A 215 LC-------------------LEL-ANTSIRNLSLSNSQLSTTS-NTTFLGLKWTNLTMLDLSYN--------------- 258 (680)
T ss_dssp HH-------------------HHH-TTSCCCEEECTTSCCCEEC-TTTTGGGGGSCCCEEECTTS---------------
T ss_pred HH-------------------HHH-HHCCCCEEECCCCCCCCCC-HHHHHCCCCCCCCEEECCCC---------------
T ss_conf 87-------------------775-3151008874577436468-66751467677888778788---------------
Q ss_pred CCCEEECCCCCCCCCCCCCCCCCCCHHHCCCCCCCEEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCCCCC
Q ss_conf 64499844813035556899999561100899858999028856567874676339998899876886888886685699
Q 001719 391 SLKYLSIRGCVLKGALHGQDGGTFPKFLYHQHDLKNVDLSHLNLSGKFPNWLVENNTNLKTLLLANNSLFGSFRMPIHSH 470 (1021)
Q Consensus 391 ~L~~L~l~~~~l~~~~~~~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 470 (1021)
.+.+..|.. +..+++|+.|++++|.+.+..+..+..+
T Consensus 259 ------------------------------------------~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l 295 (680)
T 1ziw_A 259 ------------------------------------------NLNVVGNDS-FAWLPQLEYFFLEYNNIQHLFSHSLHGL 295 (680)
T ss_dssp ------------------------------------------CCCEECTTT-TTTCTTCCEEECCSCCBSEECTTTTTTC
T ss_pred ------------------------------------------CCCCCCCCC-CCCCCCCCEEECCCCCCCCCCHHHHCCC
T ss_conf ------------------------------------------767568021-1674105685577885676586562678
Q ss_pred CCCCEEECCCCCCCCCC--------CHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCC-CCHHHH
Q ss_conf 98489986899787566--------425541699997898878868877770012999988997678758986-404665
Q 001719 471 QKLATLDVSTNFFRGHI--------PVEIGTYLSGLMDLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGE-IPDRMA 541 (1021)
Q Consensus 471 ~~L~~L~Ls~n~l~~~~--------~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~-i~~~~~ 541 (1021)
++|+.+++++|...+.+ ....+..+++|++|++++|.+.+..+..|..+++|++|++++|.+... ++...+
T Consensus 296 ~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f 375 (680)
T 1ziw_A 296 FNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETF 375 (680)
T ss_dssp TTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTT
T ss_pred CCCCEEECCCHHHHCCCCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCHHHHHCCHHHH
T ss_conf 88557736331321333335545438656246777888879898268788557406568728988798014432353220
Q ss_pred HCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCH-HHHCCCCCCC
Q ss_conf 149987499878986664456433489986589824884656588432355755769842885999612-4420898776
Q 001719 542 IGCFSLEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPKSLSKCYLLGGLYLSDNHLSGKIP-RWLGNLSALE 620 (1021)
Q Consensus 542 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~ 620 (1021)
..+ ..++|+.|++++|++.+..+..+..+++|+.|++++|.+.+.+| ..+.++++|+
T Consensus 376 ~~~----------------------~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~ 433 (680)
T 1ziw_A 376 VSL----------------------AHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIF 433 (680)
T ss_dssp GGG----------------------TTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCC
T ss_pred CCC----------------------CCCCCCEEECCCCCCCEECHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCC
T ss_conf 245----------------------5686766889999777677544207788888867787575435755325754612
Q ss_pred EEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCC
Q ss_conf 89878896667753000399999799764870655789987989601998427725655604442385656897437735
Q 001719 621 DIIMPNNNLEGPIPIEFCQLDYLKILDLSNNTIFGTLPSCFSPAYIEEIHLSKNKIEGRLESIIHYSPYLMTLDLSYNCL 700 (1021)
Q Consensus 621 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~N~l 700 (1021)
.|++++|.+.+..+..|..+++|+.|++++|.+... +..|..+..+++|+.|++++|.+
T Consensus 434 ~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~---------------------~~~p~~~~~l~~L~~L~Ls~N~l 492 (680)
T 1ziw_A 434 EIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNV---------------------DSSPSPFQPLRNLTILDLSNNNI 492 (680)
T ss_dssp EEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCT---------------------TCSSCTTTTCTTCCEEECCSSCC
T ss_pred EEECCCCCCCEECHHHHHCCCCCCCCHHCCCCCCCC---------------------CCCCCCCCCCCCCCEEECCCCCC
T ss_conf 784489975422764550075431011014644225---------------------66776455578789998999987
Q ss_pred CCCCCCCCCCCCCCCEEECCCCCCCCCCCC--------CCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 888780016999976787415615423780--------114998878896668838556994310143344544344566
Q 001719 701 HGSIPTWIDRLPQLSYLLLANNYIEGEIPI--------QICQLKEVRLIDLSHNNLSGHIPPCLVNTALNEGYHEAVAPI 772 (1021)
Q Consensus 701 ~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~--------~~~~l~~L~~L~Ls~N~l~g~ip~~l~~~~~~~~~~~~~~~~ 772 (1021)
++..+..+.++++|+.|++++|++++..+. .+..+++|+.
T Consensus 493 ~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~-------------------------------- 540 (680)
T 1ziw_A 493 ANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHI-------------------------------- 540 (680)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCE--------------------------------
T ss_pred CCCCHHHHCCCCCCCEEECCCCCCCCCCHHHCCCCCCHHHCCCCCCCE--------------------------------
T ss_conf 767944634553468885889973000000046774142337998888--------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCEEECCCCEECCCCC-CCCCCCCCCCEEECCCC
Q ss_conf 78988875543589899999998753178862375211111102455479911242058692-01258877988976789
Q 001719 773 SSSSDDASTYVLPSVAPNGSPIGEEETVQFTTKNMSYYYQGRILMSMSGIDLSCNKLTGEIP-TQIGYLTRIRALNLSHN 851 (1021)
Q Consensus 773 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip-~~~~~l~~L~~L~Ls~N 851 (1021)
|++++|+++ .+| ..+..+++|+.|+|++|
T Consensus 541 -------------------------------------------------L~L~~N~l~-~i~~~~~~~l~~L~~L~Ls~N 570 (680)
T 1ziw_A 541 -------------------------------------------------LNLESNGFD-EIPVEVFKDLFELKIIDLGLN 570 (680)
T ss_dssp -------------------------------------------------EECCSSCCC-CCCTTTTTTCTTCCEEECCSS
T ss_pred -------------------------------------------------EECCCCCCC-CCCHHHCCCCCCCCEEECCCC
T ss_conf -------------------------------------------------889999788-779777346667522389999
Q ss_pred CCCCCHHHCCCCCCCCCEEECCCCCCCCCCCCCCC-CCCCCCEEECCCCCCEECCC
Q ss_conf 67543000013888888886868628777981232-69999889810880100289
Q 001719 852 NLTGTIPTTFSNLKQIESLDLSYNLLLGKIPPQLI-VLNTLAVFRVANNNLSGKIP 906 (1021)
Q Consensus 852 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~l~-~l~~L~~L~ls~N~l~g~~p 906 (1021)
++++..+..|.++++|+.|++++|++++.+|..+. .+++|+.+++++|++....+
T Consensus 571 ~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~ 626 (680)
T 1ziw_A 571 NLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCE 626 (680)
T ss_dssp CCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCC
T ss_pred CCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCCEEECCCCCCCCCCC
T ss_conf 77767976837898888898999968705966830114665779831897025776
No 5
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=461.20 Aligned_cols=296 Identities=23% Similarity=0.177 Sum_probs=128.5
Q ss_pred CCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCC
Q ss_conf 74998789866644564334899865898248846565884323557557698428859996124420898776898788
Q 001719 547 LEILALSNNNLQGHIFSKKFNLTNLMRLQLDGNKFIGEIPKSLSKCYLLGGLYLSDNHLSGKIPRWLGNLSALEDIIMPN 626 (1021)
Q Consensus 547 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~ 626 (1021)
|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+.++++|+.|++++|.+.+..|..+..+++|+.|++++
T Consensus 268 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 347 (844)
T 3j0a_A 268 VRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQK 347 (844)
T ss_dssp CCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCS
T ss_pred CCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCC
T ss_conf 61898979945515863452589999998979818987968836888999898989978851878846899999898989
Q ss_pred CCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCC-
Q ss_conf 9666775300039999979976487065578998798960199842772565560444238565689743773588878-
Q 001719 627 NNLEGPIPIEFCQLDYLKILDLSNNTIFGTLPSCFSPAYIEEIHLSKNKIEGRLESIIHYSPYLMTLDLSYNCLHGSIP- 705 (1021)
Q Consensus 627 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~N~l~~~~p- 705 (1021)
|.+.+..+..|..+++|+.|++++|.+.+... .++|+.+++++|++..... ...+++.+++++|.+.+...
T Consensus 348 N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~----~~~L~~L~l~~N~l~~l~~----~~~~l~~L~ls~N~l~~l~~~ 419 (844)
T 3j0a_A 348 NHIAIIQDQTFKFLEKLQTLDLRDNALTTIHF----IPSIPDIFLSGNKLVTLPK----INLTANLIHLSENRLENLDIL 419 (844)
T ss_dssp CCCCCCCSSCSCSCCCCCEEEEETCCSCCCSS----CCSCSEEEEESCCCCCCCC----CCTTCCEEECCSCCCCSSTTH
T ss_pred CCCCCCCHHHHCCCCCCCEEECCCCCCCCCCC----CCCCCHHCCCCCCCCCCCC----CCCCCCEEECCCCCCCCCCHH
T ss_conf 98776286661378889998898997786168----8982320058997231455----455431221456753457556
Q ss_pred CCCCCCCCCCEEECCCCCCCCCCCC-CCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 0016999976787415615423780-114998878896668838556994310143344544344566789888755435
Q 001719 706 TWIDRLPQLSYLLLANNYIEGEIPI-QICQLKEVRLIDLSHNNLSGHIPPCLVNTALNEGYHEAVAPISSSSDDASTYVL 784 (1021)
Q Consensus 706 ~~~~~l~~L~~L~L~~n~l~~~~p~-~~~~l~~L~~L~Ls~N~l~g~ip~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 (1021)
..+..+++|+.|++++|++++..+. .+..+++|+.|++++|.+++..+.
T Consensus 420 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~------------------------------ 469 (844)
T 3j0a_A 420 YFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWET------------------------------ 469 (844)
T ss_dssp HHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCS------------------------------
T ss_pred HHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC------------------------------
T ss_conf 66512776666667787125555433356687310024777736441013------------------------------
Q ss_pred CCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCEEECCCCEECCCCCCCCCCCCCCCEEECCCCCCCCCHHHCCCCC
Q ss_conf 89899999998753178862375211111102455479911242058692012588779889767896754300001388
Q 001719 785 PSVAPNGSPIGEEETVQFTTKNMSYYYQGRILMSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNL 864 (1021)
Q Consensus 785 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 864 (1021)
+..|..+..+++|+.|+|++|.+++..|..|..+
T Consensus 470 ----------------------------------------------~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 503 (844)
T 3j0a_A 470 ----------------------------------------------ELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHL 503 (844)
T ss_dssp ----------------------------------------------CCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSC
T ss_pred ----------------------------------------------CCCHHHHCCCCCCCEEECCCCCCCCCCHHHCCCH
T ss_conf ----------------------------------------------5535554475536577788985655395570450
Q ss_pred CCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 8888886868628777981232699998898108801002898532357887443447668889899
Q 001719 865 KQIESLDLSYNLLLGKIPPQLIVLNTLAVFRVANNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGLPL 931 (1021)
Q Consensus 865 ~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~~p~~~~~~~~l~~~~~~gNp~lC~~~l 931 (1021)
++|+.|+|++|++++..|..+. ++|+.|++++|++++.+|.. +..+..+++.||||.|+|++
T Consensus 504 ~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~---~~~L~~l~l~~Np~~C~c~~ 565 (844)
T 3j0a_A 504 TALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDV---FVSLSVLDITHNKFICECEL 565 (844)
T ss_dssp CSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCC---CSSCCEEEEEEECCCCSSSC
T ss_pred HHHHEEECCCCCCCCCCHHHHH--CCCCEEECCCCCCCCCCHHH---HCCCCEEEECCCCCCCCCCC
T ss_conf 1221569999978745710110--04558889888478889668---37768899319970253661
No 6
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=443.29 Aligned_cols=325 Identities=25% Similarity=0.255 Sum_probs=195.6
Q ss_pred CCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 99978988788688777700129999889976787589864046651499874998789866644564334899865898
Q 001719 496 SGLMDLNLSRNAFNGSIPSSFADMKMLKSLDISYNQLTGEIPDRMAIGCFSLEILALSNNNLQGHIFSKKFNLTNLMRLQ 575 (1021)
Q Consensus 496 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 575 (1021)
++++.|++++|.+.+..+..|..+++|+.|++++|.++ .++...+.++++|++|++++|.+.+..+..+..+++|+.|+
T Consensus 266 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 344 (844)
T 3j0a_A 266 SSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKIN-KIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYID 344 (844)
T ss_dssp SCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCC-EECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEE
T ss_pred CCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCC-CCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEE
T ss_conf 78618989799455158634525899999989798189-87968836888999898989978851878846899999898
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCC
Q ss_conf 24884656588432355755769842885999612442089877689878896667753000399999799764870655
Q 001719 576 LDGNKFIGEIPKSLSKCYLLGGLYLSDNHLSGKIPRWLGNLSALEDIIMPNNNLEGPIPIEFCQLDYLKILDLSNNTIFG 655 (1021)
Q Consensus 576 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 655 (1021)
+++|.+....+..+..+++|+.|++++|.+++. . .+++|+.|++++|++..
T Consensus 345 L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-----~------------------------~~~~L~~L~l~~N~l~~ 395 (844)
T 3j0a_A 345 LQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-----H------------------------FIPSIPDIFLSGNKLVT 395 (844)
T ss_dssp CCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-----S------------------------SCCSCSEEEEESCCCCC
T ss_pred CCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCC-----C------------------------CCCCCCHHCCCCCCCCC
T ss_conf 989987762866613788899988989977861-----6------------------------88982320058997231
Q ss_pred CCCCCCCCCCCCEEECCCCCCCCCCC-HHHHCCCCCCEEECCCCCCCCCCCC-CCCCCCCCCEEECCCCCCCCCCCCCCC
Q ss_conf 78998798960199842772565560-4442385656897437735888780-016999976787415615423780114
Q 001719 656 TLPSCFSPAYIEEIHLSKNKIEGRLE-SIIHYSPYLMTLDLSYNCLHGSIPT-WIDRLPQLSYLLLANNYIEGEIPIQIC 733 (1021)
Q Consensus 656 ~~p~~~~~~~L~~L~L~~n~l~~~~~-~~~~~~~~L~~L~L~~N~l~~~~p~-~~~~l~~L~~L~L~~n~l~~~~p~~~~ 733 (1021)
+|.. ..+++.+++++|.+.+... ..+..+++|+.|++++|.+++..+. .+..+++|+.|++++|.+++..+..
T Consensus 396 -l~~~--~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~-- 470 (844)
T 3j0a_A 396 -LPKI--NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETE-- 470 (844)
T ss_dssp -CCCC--CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSC--
T ss_pred -CCCC--CCCCCEEECCCCCCCCCCHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--
T ss_conf -4554--55431221456753457556665127766666677871255554333566873100247777364410135--
Q ss_pred CCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCC
Q ss_conf 99887889666883855699431014334454434456678988875543589899999998753178862375211111
Q 001719 734 QLKEVRLIDLSHNNLSGHIPPCLVNTALNEGYHEAVAPISSSSDDASTYVLPSVAPNGSPIGEEETVQFTTKNMSYYYQG 813 (1021)
Q Consensus 734 ~l~~L~~L~Ls~N~l~g~ip~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 813 (1021)
..|..+..
T Consensus 471 -----------------~~~~~~~~------------------------------------------------------- 478 (844)
T 3j0a_A 471 -----------------LCWDVFEG------------------------------------------------------- 478 (844)
T ss_dssp -----------------CCSSCSSC-------------------------------------------------------
T ss_pred -----------------CCHHHHCC-------------------------------------------------------
T ss_conf -----------------53555447-------------------------------------------------------
Q ss_pred CCCCCCCEEECCCCEECCCCCCCCCCCCCCCEEECCCCCCCCCHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCE
Q ss_conf 10245547991124205869201258877988976789675430000138888888868686287779812326999988
Q 001719 814 RILMSMSGIDLSCNKLTGEIPTQIGYLTRIRALNLSHNNLTGTIPTTFSNLKQIESLDLSYNLLLGKIPPQLIVLNTLAV 893 (1021)
Q Consensus 814 ~~~~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~ 893 (1021)
+..|+.|+|++|++++..|..+..+++|+.|+|++|++++..|..+. ++|+.|||++|++++.+|..+. +|+.
T Consensus 479 --l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~~---~L~~ 551 (844)
T 3j0a_A 479 --LSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVFV---SLSV 551 (844)
T ss_dssp --BCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCCS---SCCE
T ss_pred --CCCCCEEECCCCCCCCCCHHHCCCHHHHHEEECCCCCCCCCCHHHHH--CCCCEEECCCCCCCCCCHHHHC---CCCE
T ss_conf --55365777889856553955704501221569999978745710110--0455888988847888966837---7688
Q ss_pred EECCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 9810880100289853235788744344766888989989989999
Q 001719 894 FRVANNNLSGKIPDRVAQFSTFEEDSYEGNPFLCGLPLSKSCDDNG 939 (1021)
Q Consensus 894 L~ls~N~l~g~~p~~~~~~~~l~~~~~~gNp~lC~~~l~~~c~~~~ 939 (1021)
+++++|++....+.. .|..-....+..+|+.+....|..+.
T Consensus 552 l~l~~Np~~C~c~~~-----~f~~~~~~~~~~~~~~~~~~~C~~p~ 592 (844)
T 3j0a_A 552 LDITHNKFICECELS-----TFINWLNHTNVTIAGPPADIYCVYPD 592 (844)
T ss_dssp EEEEEECCCCSSSCC-----SHHHHHHHTTTTTCCCGGGCCCSSCS
T ss_pred EEECCCCCCCCCCCH-----HHHHHHHHCCCCCCCCCCCCCCCCCH
T ss_conf 993199702536618-----99999973685302660027557806
No 7
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=1.00 E-value=1 Score=440.80 Aligned_cols=133 Identities=23% Similarity=0.203 Sum_probs=65.5
Q ss_pred CCCEEECCCCCCCCCCCCCHHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHCCCCCCCCC
Q ss_conf 99889698987798545201110169999979969898789733214789999989976983144445910028999998
Q 001719 108 QLESLDLSWNNIAGCVENEGVERLSRLNNLKFLLLDSNYFNNSIFSSLGGLSSLRILSLADNRLNGSIDIKGLDSLSNLE 187 (1021)
Q Consensus 108 ~L~~LdLs~n~i~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~l~~l~~L~ 187 (1021)
++++||+++|.+.+..+ .+|.++++|++|++++|.+.+..|..|+++++|++|++++|.+.+..| ..++++++|+
T Consensus 34 ~l~~L~Ls~n~i~~~~~----~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~ 108 (606)
T 3t6q_A 34 STECLEFSFNVLPTIQN----TTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAE-TALSGPKALK 108 (606)
T ss_dssp TCCEEECTTCCCSEECT----TTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECT-TTTSSCTTCC
T ss_pred CCCEEECCCCCCCCCCH----HHHCCCCCCEEEECCCCCCCEECHHHCCCCCCCCEEECCCCCCCCCCH-HHHCCCCCCC
T ss_conf 67589815873471796----672567665289788983552485113684336764488985654586-5523442153
Q ss_pred EEECCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHCCCCCCCCEEECCCCCCC
Q ss_conf 99599987999887310001379999897888899798863000039999878975896374
Q 001719 188 ELDMSYNAIDNLVVPQGLERLSTLSNLKFLRLDYNSFNSSIFSSLGGLSSLRILSLADNRFN 249 (1021)
Q Consensus 188 ~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~ 249 (1021)
+|++++|.+....+. .+.++++|++|++++|.+.+.....+..+++|++|++++|.+.
T Consensus 109 ~L~L~~n~i~~l~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 166 (606)
T 3t6q_A 109 HLFFIQTGISSIDFI----PLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIH 166 (606)
T ss_dssp EEECTTSCCSCGGGS----CCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCC
T ss_pred EEECCCCCCCCCCCC----HHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCC
T ss_conf 765212676657810----1223782238988798341147654568765687776568445
No 8
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=1.00 E-value=1 Score=438.84 Aligned_cols=111 Identities=22% Similarity=0.202 Sum_probs=81.9
Q ss_pred CCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99979969898789733214789999989976983144445910028999998995999879998873100013799998
Q 001719 135 NNLKFLLLDSNYFNNSIFSSLGGLSSLRILSLADNRLNGSIDIKGLDSLSNLEELDMSYNAIDNLVVPQGLERLSTLSNL 214 (1021)
Q Consensus 135 ~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L 214 (1021)
.++++|++++|.+++..+..|+++++|++|++++|.+.+ +++..|.++++|++|++++|.+....+. .++++++|
T Consensus 33 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~----~~~~l~~L 107 (606)
T 3t6q_A 33 NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYW-IHEDTFQSQHRLDTLVLTANPLIFMAET----ALSGPKAL 107 (606)
T ss_dssp TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCE-ECTTTTTTCTTCCEEECTTCCCSEECTT----TTSSCTTC
T ss_pred CCCCEEECCCCCCCCCCHHHHCCCCCCEEEECCCCCCCE-ECHHHCCCCCCCCEEECCCCCCCCCCHH----HHCCCCCC
T ss_conf 867589815873471796672567665289788983552-4851136843367644889856545865----52344215
Q ss_pred CEEECCCCCCCCCCCHHCCCCCCCCEEECCCCCCCC
Q ss_conf 978888997988630000399998789758963744
Q 001719 215 KFLRLDYNSFNSSIFSSLGGLSSLRILSLADNRFNG 250 (1021)
Q Consensus 215 ~~L~L~~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~ 250 (1021)
++|++++|.+.+..+..++++++|++|++++|.+.+
T Consensus 108 ~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~ 143 (606)
T 3t6q_A 108 KHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISS 143 (606)
T ss_dssp CEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCC
T ss_pred CEEECCCCCCCCCCCCHHCCCCCCCEEECCCCCCCC
T ss_conf 376521267665781012237822389887983411
No 9
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=1.00 E-value=1 Score=430.43 Aligned_cols=137 Identities=21% Similarity=0.214 Sum_probs=91.5
Q ss_pred CCCCEEECCCCCCCCCCCCCHHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHCCCCCCCC
Q ss_conf 89988969898779854520111016999997996989878973321478999998997698314444591002899999
Q 001719 107 QQLESLDLSWNNIAGCVENEGVERLSRLNNLKFLLLDSNYFNNSIFSSLGGLSSLRILSLADNRLNGSIDIKGLDSLSNL 186 (1021)
Q Consensus 107 ~~L~~LdLs~n~i~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~l~~l~~L 186 (1021)
+++++|++++|.+.+..+ ..|.++++|++|++++|.+.+..+..|+++++|++|++++|.+.+..| ..|+++++|
T Consensus 32 ~~l~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p-~~~~~l~~L 106 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKS----YSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSP-GSFSGLTSL 106 (606)
T ss_dssp TTCCEEECTTSCCCEECT----TTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCT-TSSTTCTTC
T ss_pred CCCCEEECCCCCCCEECH----HHCCCCCCCCEEECCCCCCCCCCHHHHHCHHHCCEEECCCCCCCCCCH-HHCCCCCCC
T ss_conf 876788788897577375----455577667488688773664397773060106886787985630485-220786537
Q ss_pred CEEECCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCC-CCCHHCCCCCCCCEEECCCCCCCCCC
Q ss_conf 8995999879998873100013799998978888997988-63000039999878975896374434
Q 001719 187 EELDMSYNAIDNLVVPQGLERLSTLSNLKFLRLDYNSFNS-SIFSSLGGLSSLRILSLADNRFNGSI 252 (1021)
Q Consensus 187 ~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~-~~~~~l~~l~~L~~L~Ls~n~l~~~~ 252 (1021)
++|++++|.+....+. .++++++|++|++++|.+.+ .+|..++++++|++|++++|.+.+..
T Consensus 107 ~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~ 169 (606)
T 3vq2_A 107 ENLVAVETKLASLESF----PIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTIT 169 (606)
T ss_dssp CEEECTTSCCCCSSSS----CCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEEC
T ss_pred CEEECCCCCCCCCCCC----CCCCCCCCCEEECCCCCCCCEECHHHHHHCCCCCEEECCCCCCEECC
T ss_conf 8887037755544511----34898877989687885232530686732677778876688531057
No 10
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=1.00 E-value=1 Score=423.05 Aligned_cols=109 Identities=17% Similarity=0.205 Sum_probs=59.7
Q ss_pred CCCEEECCCCEECCCCCCCCCCCCCCCEEEC------CCCCCCCCHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 5547991124205869201258877988976------7896754300001388888888686862877798123269999
Q 001719 818 SMSGIDLSCNKLTGEIPTQIGYLTRIRALNL------SHNNLTGTIPTTFSNLKQIESLDLSYNLLLGKIPPQLIVLNTL 891 (1021)
Q Consensus 818 ~L~~L~Ls~N~l~g~ip~~~~~l~~L~~L~L------s~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L 891 (1021)
.|+.|++++|++++ +|..+..+++|+.|+| ++|++.+.+|..+..+++|+.|+|++|++ +.+|..+. ++|
T Consensus 514 ~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L 589 (636)
T 4eco_A 514 YLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNI 589 (636)
T ss_dssp TCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTC
T ss_pred CCCEEECCCCCCCC-CCHHHHCCCCCCEEECCCCCCCCCCCCCCCCHHHHHCCCCCCEEECCCCCC-CCCCHHHH--CCC
T ss_conf 76989898998877-682353088878788988866566731212737785699878898989947-70597683--867
Q ss_pred CEEECCCCCCEECCCCCCCC--CCCCCCCCCCCCCCCCCCC
Q ss_conf 88981088010028985323--5788744344766888989
Q 001719 892 AVFRVANNNLSGKIPDRVAQ--FSTFEEDSYEGNPFLCGLP 930 (1021)
Q Consensus 892 ~~L~ls~N~l~g~~p~~~~~--~~~l~~~~~~gNp~lC~~~ 930 (1021)
+.|++++|++....+..+.. ......+.+......|+|+
T Consensus 590 ~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~C~ 630 (636)
T 4eco_A 590 SVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQDIRGCD 630 (636)
T ss_dssp CEEECCSCTTCEEECTTTHHHHHTTCCEEECCTTSEEESCG
T ss_pred CEEECCCCCCCCCCHHHCCHHHHCCCCEEECCCCCCCCCCC
T ss_conf 89987699876336786201122661003437754347986
Done!