Query 001720
Match_columns 1021
No_of_seqs 244 out of 768
Neff 6.2
Searched_HMMs 29240
Date Tue Mar 26 22:42:33 2013
Command hhsearch -i /local_scratch/syshi/lefta3m2/001720.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H2_40-44//hhsearch_pdb/001720hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3efo_B SEC24 related gene fami 1.0 1 1 1442.2 70.5 709 299-1020 28-768 (770)
2 3eh2_A Protein transport prote 1.0 1 1 1432.7 73.8 710 298-1020 23-764 (766)
3 3eh1_A Protein transport prote 1.0 1 1 1401.6 73.9 710 301-1019 26-751 (751)
4 1m2v_B SEC24, protein transpor 1.0 1 1 1398.2 66.7 752 260-1019 110-926 (926)
5 1pcx_A Protein transport prote 1.0 1 1 1368.8 70.7 707 305-1019 50-810 (810)
6 1m2o_A SEC23, protein transpor 1.0 1 1 1141.0 59.4 657 310-1019 5-765 (768)
7 2nut_A Protein transport prote 1.0 1 1 1119.0 56.6 656 311-1019 15-766 (769)
8 2yrc_A Protein transport prote 1.0 1 1 92.1 2.0 37 354-390 13-51 (59)
9 4fx5_A VON willebrand factor t 1.0 1 1 90.7 37.3 305 426-792 76-407 (464)
10 2x31_A Magnesium-chelatase 60 1.0 1 1 73.4 -3.1 178 426-662 4-187 (189)
No 1
>3efo_B SEC24 related gene family, member D; copii, coat protein, transport signal, disease mutation, endoplasmic reticulum, ER-golgi transport, golgi apparatus, membrane; 2.70A {Homo sapiens} PDB: 3eg9_B
Probab=1.00 E-value=1 Score=1442.19 Aligned_cols=709 Identities=32% Similarity=0.616 Sum_probs=678.6
Q ss_pred CCCCCCCCCCCC----CCCCCCEECCCCCCCCCHHHHHHCCCCEEEEECCCCCCCCCCC---------------CCCCEE
Q ss_conf 999997876522----5899921000364589987775137764889813888999988---------------765537
Q 001720 299 VEPSSLAETYPL----NCHSRYLRLTTSAIPNSQSLVSRWHLPLGAVVCPLAEPPEGNL---------------FICRTY 359 (1021)
Q Consensus 299 ~~pp~~~~~~~~----N~~P~yiR~T~~~iP~t~~ll~~~~lPlgivv~Pfa~~~~~e~---------------~rCrAY 359 (1021)
..||++++.|++ ||+|+|||+|||+||.|++++++++||||++|+||++..++|. +|||||
T Consensus 28 ~~pp~~~~~~~~~d~gn~~p~~~R~T~n~iP~t~~l~~~~~lPlg~~i~Pl~~~~~~e~p~pvv~~~~~~pvRC~rCray 107 (770)
T 3efo_B 28 QIPPLVTTDCMIQDQGNASPRFIRCTTYCFPCTSDMAKQAQIPLAAVIKPFATIPSNESPLYLVNHGESGPVRCNRCKAY 107 (770)
T ss_dssp CCCCCTTSCCEEECSSSCCTTTEEESBSEEESSHHHHHHHCCCCEEEECTTCCCCTTSCCCCEECCTTTCSCBCTTTCCB
T ss_pred CCCCCCCCCEEEEECCCCCCCEEEEECCCCCCCHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 88989877536641577999858841134799999997379984999975887876568987425778898735887888
Q ss_pred ECCCEEEECCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCC--CCCCCCCEEEEEEECC
Q ss_conf 81660696089569975899978998432134586766579788886555437986266655--8999997699999652
Q 001720 360 VNPYVTFTDAGRKWRCNICALLNDVPGDYFAHLDATGRRIDIDQRPELTKGSVEFVAPTEYM--VRPPMPPLYFFLIDVS 437 (1021)
Q Consensus 360 iNPf~~f~~~G~~W~CnlC~~~N~vp~~Y~~~l~~~g~r~D~~~rPEL~~gsvEfvap~eY~--~rpp~pp~yvFvIDvS 437 (1021)
|||||+|+++|++|+||||+..|++|.+|+++++++|+|.|+++||||++|+|||++|.||| .|+|+||+|+||||||
T Consensus 108 iNPf~~f~~~g~~w~Cn~C~~~N~~P~~Y~~~l~~~g~r~d~~~rpEL~~~tvEf~ap~eY~~~~~~p~pp~y~FvIDvs 187 (770)
T 3efo_B 108 MCPFMQFIEGGRRYQCGFCNCVNDVPPFYFQHLDHIGRRLDHYEKPELSLGSYEYVATLDYCRKSKPPNPPAFIFMIDVS 187 (770)
T ss_dssp SCTTCEEEGGGTEEECTTTCCEEECCGGGCCCCCSSSCTTTGGGSHHHHCSEEEEECCGGGSGGGSCCCCCEEEEEEECS
T ss_pred CCCCEEEECCCCEEEECCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCEEEECCHHHHCCCCCCCCCEEEEEEECC
T ss_conf 17735981599779954665557882675234553466466446920056742331687874367899985899999861
Q ss_pred HHHHHHCHHHHHHHHHHHHHHCCCCC-----CCCEEEEEEECCEEEEEECCCCCCCCCEEECCCCCCCCCCCCCCCCEEH
Q ss_conf 66886237999999999997409999-----9843999997675999826999997614311453223578899652302
Q 001720 438 ISAIRSGMLEVVAQTIKSCLDELPGF-----PRTQIGFITFDSTIHFYNMKSSLTQPQMMVISDLDDIFVPLPDDLLVNL 512 (1021)
Q Consensus 438 ~~av~sG~l~~~~~sI~~~L~~Lp~~-----~rt~VgiITFds~Vhfynl~~~~~~pqmlVvsDldd~f~P~p~~llv~l 512 (1021)
++++++|+++++|++|+++|+.||++ +|++|||||||++|||||+++.++++||+|++|++|+|+|++++|||++
T Consensus 188 ~~av~sg~l~~~~~sl~~~L~~lP~~~~~~~~~~~VG~ITfd~~vh~y~l~~~~~q~q~~vv~d~~d~f~P~~~~~Lv~l 267 (770)
T 3efo_B 188 YSNIKNGLVKLICEELKTMLEKIPKEEQEETSAIRVGFITYNKVLHFFNVKSNLAQPQMMVVTDVGEVFVPLLDGFLVNY 267 (770)
T ss_dssp HHHHHTTHHHHHHHHHHHHGGGCCCCTTSSSCSCEEEEEEESSSEEEEECCTTCSSCEEEEECCTTSCCCCCSSSSSBCT
T ss_pred HHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCEEEEEECCCCCCCCEEEEECCCCCCCCCCCCCEEEEH
T ss_conf 43200128999999999999858853356676635999996888999967885567549984264324677755503549
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHH--CCCEEEEEECCCCC-CCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 66699999999528974358887665469999999999981--29889999427999-8853321368867545897566
Q 001720 513 SESRSVVDTLLDSLPSMFQDNMNVESAFGPALKAAFMVMSR--LGGKLLIFQNSLPS-LGVGCLKLRGDDLRVYGTDKEH 589 (1021)
Q Consensus 513 ~esr~~I~~lLe~Lp~~f~~~~~~~~alG~AL~aA~~lL~~--~GGkIivF~s~~Pt-~GpG~L~~r~~~~r~~gt~ke~ 589 (1021)
+||++.|+++|++|+.+|.+++..++|+|+||++|+.+|+. .||||++|++|+|+ .|+|+|+.|++ .+..+++||+
T Consensus 268 ~e~~~~i~~lL~~L~~~~~~~~~~~t~~g~al~aa~~~l~~~~~GGkI~~F~s~lP~t~GpG~l~~r~~-~~~~~t~ke~ 346 (770)
T 3efo_B 268 QESQSVIHNLLDQIPDMFADSNENETVFAPVIQAGMEALKAADCPGKLFIFHSSLPTAEAPGKLKNRDD-KKLVNTDKEK 346 (770)
T ss_dssp TTTHHHHHHHHHHHHHHHHTCCCCCCCCHHHHHHHHHHHHHHTCCEEEEEEECSCCCSSSTTCCCCCCC-CCCSSCSCGG
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCCC-CCCCCCCCHH
T ss_conf 999999999998627652578887534899999999984668888589999557897678865424444-4456772014
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 67888807899999998517918999972389768121442113454089991999875257799999998302444342
Q 001720 590 SLRIPEDPFYKQMAADLTKFQIAVNVYAFSDKYTDIASLGTLAKYTGGQVYYYPSFQSTTHGERLRHELSRDLTRETAWE 669 (1021)
Q Consensus 590 ~l~~p~~~fYk~LA~~~~~~gIsVDlFl~s~~~~Diatl~~L~~~TGG~i~~Y~~F~~~~d~~kl~~dL~r~ltr~~g~~ 669 (1021)
++++++++|||+||++|+++||+||+|+++.+|+|+|+|+.|+++|||++++|++|+.++|.++|.+||.|.+++++||+
T Consensus 347 ~~~~~a~~fY~~lA~~~~~~~i~VDlF~~s~~~vdlatl~~l~~~TGG~v~~y~~F~~~~~~~~f~~dl~~~l~~~~gf~ 426 (770)
T 3efo_B 347 ILFQPQTNVYDSLAKDCVAHGCSVTLFLFPSQYVDVASLGLVPQLTGGTLYKYNNFQMHLDRQQFLNDLRNDIEKKIGFD 426 (770)
T ss_dssp GGGSCSSSHHHHHHHHHHHTTEEEEEEECCSSCCCHHHHTHHHHHTTCCEEECTTCCHHHHHHHHHHHHHHHHHSCEEEE
T ss_pred HHHCCHHHHHHHHHHHHHHCCEEEEEEEECCCCCCHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCEEEE
T ss_conf 43053379999999999975947999970587668488887876069669985687606689999999998632244423
Q ss_pred EEEEEEECCCEEEEEEECCCCCCCCCCEEECCCCCCCCEEEEEEECCCCCCCCEEEEEEEEEEEECCCCEEEEEEEECCC
Q ss_conf 48999948991897520685458989335136799980899997304547885058999999883498299999911012
Q 001720 670 AVMRIRCGKGVRFTNYHGNFMLRSTDLLALPAVDCDKAYAMQLSLEETLLTTQTVYFQVALLYTASCGERRIRVHTLAAP 749 (1021)
Q Consensus 670 a~lRVR~S~Gl~V~~~~Gnf~~rs~~~~~l~~id~d~Siav~l~~d~~l~~~~~~~iQ~AlLYT~~~GeRRIRV~Tl~lp 749 (1021)
|+||||||+||+|+++||||+++++++|+++++++|++|+|+|+|++++.+...+|||+|++||+.+|+|||||||++++
T Consensus 427 a~mrVR~S~gl~v~~~~G~~~~~~t~~~~l~~~~~d~s~~v~f~~~~~l~~~~~~~~Q~allYt~~~G~RRiRV~T~~l~ 506 (770)
T 3efo_B 427 AIMRVRTSTGFRATDFFGGILMNNTTDVEMAAIDCDKAVTVEFKHDDKLSEDSGALIQCAVLYTTISGQRRLRIHNLGLN 506 (770)
T ss_dssp EEEEEEECTTEEEEEEESSCBCSSSSCEEEEEEESSCCEEEEEEESSCCBTTTBEEEEEEEEEECTTCCEEEEEEEEEEE
T ss_pred EEEEEEECCCEEEEEEECCEECCCCCCEEECCCCCCCEEEEEEEECCCCCCCCCEEEEEEEEEECCCCCEEEEEEEECHH
T ss_conf 79999965984899867770578887448405686746999999447777888579999998781899989999986340
Q ss_pred CCCCHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 66898899983298589999999999998139999999999999999999998654311589973014511350899999
Q 001720 750 VVSNLSDMYQQADTGAIVSVFSRLAIEKTLSHKLEDARNAVQLRLVKALKEYRNLYAVQHRLGSRMIYPESLKFLPLYCL 829 (1021)
Q Consensus 750 vt~~l~~vf~s~D~~ai~~~laK~av~~~l~~~l~d~R~~l~~~lv~iL~~YRk~~~a~~~~~gqLiLPesLklLPly~~ 829 (1021)
|++++.++|+++|++|++++|+|+|++++++++++++|+.|+++|+++|++||| +|+..++++||+|||+||+||+|++
T Consensus 507 vt~~~~~v~~~~Dqea~~~llar~av~~~~~~~l~~~r~~L~~~~~~~l~~Yrk-~~~~~~s~~ql~Lp~~lkllP~~~~ 585 (770)
T 3efo_B 507 CSSQLADLYKSCETDALINFFAKSAFKAVLHQPLKVIREILVNQTAHMLACYRK-NCASPSAASQLILPDSMKVLPVYMN 585 (770)
T ss_dssp EESCHHHHHHTBCHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHHHH-HTSCCCCTTEEEECGGGTTHHHHHH
T ss_pred HCCCHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH-HCCCCCCCCCEECCHHHHHHHHHHH
T ss_conf 126689999730999999999999999862277999999999999999999997-5337788654206788999999999
Q ss_pred HHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCEE
Q ss_conf 96200488899999990299999999918998877862503189931487888756776334453102311002588379
Q 001720 830 AICKSTPIRGGYADVTLDERCAAGYTMMALPVKKLLKLLYPCLIRVDEHLLKPSAQLDEYKNIMKRLPLVAESLDSRGLY 909 (1021)
Q Consensus 830 ~LlKS~~Lr~g~~~~~~D~R~~~~~~l~s~~~~~~~~~lYPrL~~lh~l~~~~~~~~~~~~~lP~~l~LS~e~l~~~giY 909 (1021)
+|+||.+|+.+ .++++|+|+|++++++++++..++.|+||+||++|++. .+...+|++++||.++|+++|||
T Consensus 586 ~L~Ks~~l~~~-~~~s~Der~~~~~~l~~~~~~~~l~~iyP~L~~~h~l~-------~~~~~~P~~v~ls~~~l~~~giy 657 (770)
T 3efo_B 586 CLLKNCVLLSR-PEISTDERAYQRQLVMTMGVADSQLFFYPQLLPIHTLD-------VKSTMLPAAVRCSESRLSEEGIF 657 (770)
T ss_dssp HHHHSGGGSCS-SSSCHHHHHHHHHHHHHCCHHHHHHHHSCEEEECTTCC-------SSSCSCCCCCCSSGGGCCTTCEE
T ss_pred HHHCCHHHCCC-CCCCCCHHHHHHHHHHCCCHHHHHHHHCCCEEEEECCC-------CCCCCCCCCCCCCHHHCCCCCEE
T ss_conf 99675742688-99982399999999977999999986102469974056-------55566787727729971889579
Q ss_pred EEECCCEEEEEECCCCCHHHHHHHCCCCHHHHH--HCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCH
Q ss_conf 997694679983489999999751299335431--000134555287999999999999709997741899406998325
Q 001720 910 IFDDGFRFVLWFGRMLSPDIAMNLLGSEFAAEL--SKVMLREQDNEMSRKLLGILKKLREQDPSYYQLCQLVRQGEQPRE 987 (1021)
Q Consensus 910 LLD~G~~i~lwvG~~v~~~ll~~lFGv~s~~~l--~~~~Lp~~~n~~s~~l~~iI~~lr~~r~~~~~l~~vvrqg~~~~~ 987 (1021)
|||+|+.+|||+|+++++++++||||+++++++ ++..||++||++|+++|++|++||++|..|+++ +|||||++.
T Consensus 658 LLD~g~~i~lw~G~~v~~~l~~~lfgv~~~~~i~~~~~~lp~~~~~~s~~vr~ii~~lr~~r~~~~~l-~ivr~~~~~-- 734 (770)
T 3efo_B 658 LLANGLHMFLWLGVSSPPELIQGIFNVPSFAHINTDMTLLPEVGNPYSQQLRMIMGIIQQKRPYSMKL-TIVKQREQP-- 734 (770)
T ss_dssp EEECSSEEEEEECTTCCHHHHHHHHSSSSGGGCCTTCCSCCCCCSSHHHHHHHHHHHHHTTCSSCCEE-EEEESTTST--
T ss_pred EEECCCEEEEEECCCCCHHHHHHHCCCCCHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCE-EEEECCCCH--
T ss_conf 99878579999668789899998649983443584445688889879999999999999738887517-999479974--
Q ss_pred HHHHHHHCCCCCC-CCCCCHHHHHHHHHHHHHCC
Q ss_conf 9999860045699-99998999999999998119
Q 001720 988 GFLLLANLVEDQI-GGSNGYADWIMQIHRQVLQN 1020 (1021)
Q Consensus 988 e~~f~~~LVED~~-~~~~SY~dFL~~lh~~I~~k 1020 (1021)
|.+|.++|||||+ ++++||+||||+|||+|+++
T Consensus 735 e~~f~~~LvED~~~~~~~SY~dfL~~lh~~i~~~ 768 (770)
T 3efo_B 735 EMVFRQFLVEDKGLYGGSSYVDFLCCVHKEICQL 768 (770)
T ss_dssp THHHHTTCTTSCC---CCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 9999984722499999989999999999999986
No 2
>3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle transport, cytoplasm, endoplasmic reticulum, ER-golgi transport, golgi apparatus; 2.35A {Homo sapiens}
Probab=1.00 E-value=1 Score=1432.69 Aligned_cols=710 Identities=33% Similarity=0.632 Sum_probs=679.2
Q ss_pred CCCCCCCCCCCCC----CCCCCCEECCCCCCCCCHHHHHHCCCCEEEEECCCCCCCCCCC---------------CCCCE
Q ss_conf 9999997876522----5899921000364589987775137764889813888999988---------------76553
Q 001720 298 DVEPSSLAETYPL----NCHSRYLRLTTSAIPNSQSLVSRWHLPLGAVVCPLAEPPEGNL---------------FICRT 358 (1021)
Q Consensus 298 ~~~pp~~~~~~~~----N~~P~yiR~T~~~iP~t~~ll~~~~lPlgivv~Pfa~~~~~e~---------------~rCrA 358 (1021)
..+||+++++|++ ||+|+|||+|||+||.|++++++++||||++|+||++..+.|. +||||
T Consensus 23 ~~~pP~~~t~~~~~d~gn~~p~~~R~T~~~iP~t~~l~~~~~lPlg~~i~P~~~~~~~e~~~pvv~~~~~~pvRC~rCra 102 (766)
T 3eh2_A 23 GQVPPLVTTNFLVKDQGNASPRYIRCTSYNIPCTSDMAKQAQVPLAAVIKPLARLPPEEASPYVVDHGESGPLRCNRCKA 102 (766)
T ss_dssp TCCCCCTTSCCEEECSSSCCTTTEEESBSEEESSHHHHHHHTCCEEEEECTTCCCCTTSCCCEEECCGGGCCCBCTTTCC
T ss_pred CCCCCCCCCCEEEECCCCCCCCEEECCCCCCCCCHHHHHHCCCCEEEEEECCCCCCCCCCCCCEECCCCCCCCCCCCCCC
T ss_conf 88899877754760268899863776044479999999727898389983698686557899760478888871689888
Q ss_pred EECCCEEEECCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCC--CCCCCCEEEEEEEC
Q ss_conf 7816606960895699758999789984321345867665797888865554379862666558--99999769999965
Q 001720 359 YVNPYVTFTDAGRKWRCNICALLNDVPGDYFAHLDATGRRIDIDQRPELTKGSVEFVAPTEYMV--RPPMPPLYFFLIDV 436 (1021)
Q Consensus 359 YiNPf~~f~~~G~~W~CnlC~~~N~vp~~Y~~~l~~~g~r~D~~~rPEL~~gsvEfvap~eY~~--rpp~pp~yvFvIDv 436 (1021)
||||||+|+++|++|+||||+..|++|.+|+++++++|+|.|+++||||++|+|||++|.||+. |+|+||+|+|||||
T Consensus 103 yiNPf~~f~~~g~~w~Cn~C~~~N~~P~~Y~~~l~~~g~r~d~~~rpEL~~~~vef~a~~eY~~~~~~p~pp~y~FvIDv 182 (766)
T 3eh2_A 103 YMCPFMQFIEGGRRFQCCFCSCINDVPPQYFQHLDHTGKRVDAYDRPELSLGSYEFLATVDYCKNNKFPSPPAFIFMIDV 182 (766)
T ss_dssp BCCTTCEEEGGGTEEECTTTCCEEECCTTTTGGGGGSSSCCCCSCCHHHHCSEEEEECCGGGSGGGSCCCCCEEEEEEEC
T ss_pred EECCCEEEECCCCEEEECCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCEEEECCHHHCCCCCCCCCCEEEEEEEC
T ss_conf 82773588259988995245666889978833455346646644684236684233068755057889999789999988
Q ss_pred CHHHHHHCHHHHHHHHHHHHHHCCCCC-----CCCEEEEEEECCEEEEEECCCCCCCCCEEECCCCCCCCCCCCCCCCEE
Q ss_conf 266886237999999999997409999-----984399999767599982699999761431145322357889965230
Q 001720 437 SISAIRSGMLEVVAQTIKSCLDELPGF-----PRTQIGFITFDSTIHFYNMKSSLTQPQMMVISDLDDIFVPLPDDLLVN 511 (1021)
Q Consensus 437 S~~av~sG~l~~~~~sI~~~L~~Lp~~-----~rt~VgiITFds~Vhfynl~~~~~~pqmlVvsDldd~f~P~p~~llv~ 511 (1021)
|++++++|+++++|++|+++|+.||++ ++++|||||||++|||||++.++++++|+|++|++|+|+|++++||++
T Consensus 183 s~~av~sg~l~~~~~si~~~L~~lp~~~~~~~~~~~VG~ITfd~~vh~y~l~~~~~~~q~~vv~dl~d~f~P~~~~~lv~ 262 (766)
T 3eh2_A 183 SYNAIRTGLVRLLCEELKSLLDFLPREGGAEESAIRVGFVTYNKVLHFYNVKSSLAQPQMMVVSDVADMFVPLLDGFLVN 262 (766)
T ss_dssp SHHHHHTTHHHHHHHHHHHHGGGCCCCSSCSSCCCEEEEEEESSSEEEEECCTTCSSCEEEEECCTTTCCCCCCTTSSBC
T ss_pred CHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCEEEEEECCCCCCCCEEEEECCHHHHCCCCCCCEEEE
T ss_conf 43421031899999999999985875335677663599999588799997788777865998447566406654535676
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHH--CCCEEEEEECCCCC-CCCCCCCCCCCCCCCCCCCCC
Q ss_conf 266699999999528974358887665469999999999981--29889999427999-885332136886754589756
Q 001720 512 LSESRSVVDTLLDSLPSMFQDNMNVESAFGPALKAAFMVMSR--LGGKLLIFQNSLPS-LGVGCLKLRGDDLRVYGTDKE 588 (1021)
Q Consensus 512 l~esr~~I~~lLe~Lp~~f~~~~~~~~alG~AL~aA~~lL~~--~GGkIivF~s~~Pt-~GpG~L~~r~~~~r~~gt~ke 588 (1021)
++||++.|+++||+|+.+|.+++..++|+|+||++|+++|+. .||||++|++|+|+ .|+|+|+.|++ .+..+++||
T Consensus 263 l~e~~~~i~~lL~~L~~~~~~~~~~~t~~g~al~aa~~~l~~~~~GGkI~~F~s~lP~t~GpG~l~~r~~-~~~~~sdke 341 (766)
T 3eh2_A 263 VNESRAVITSLLDQIPEMFADTRETETVFVPVIQAGMEALKAAECAGKLFLFHTSLPIAEAPGKLKNRDD-RKLINTDKE 341 (766)
T ss_dssp TTTTHHHHHHHHHHHHHHHTTCCCCCCCSHHHHHHHHHHHHHTTCCEEEEEEECSCCCSSSTTCCCCCCC-GGGTTSTTG
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCCC-CCCCCCCCH
T ss_conf 8998999999998616541578887641799999999983568988689999667898678862104554-556777200
Q ss_pred CCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCC
Q ss_conf 66788880789999999851791899997238976812144211345408999199987525779999999830244434
Q 001720 589 HSLRIPEDPFYKQMAADLTKFQIAVNVYAFSDKYTDIASLGTLAKYTGGQVYYYPSFQSTTHGERLRHELSRDLTRETAW 668 (1021)
Q Consensus 589 ~~l~~p~~~fYk~LA~~~~~~gIsVDlFl~s~~~~Diatl~~L~~~TGG~i~~Y~~F~~~~d~~kl~~dL~r~ltr~~g~ 668 (1021)
+++++++++||++||++|+++||+||+|+++.+|+|+++|+.|+++|||++++|++|+.++|.++|.+||.|.+++++||
T Consensus 342 ~~~~~~a~~fY~~la~~~~~~~i~VDlF~~s~~~vdlatl~~l~~~TGG~v~~y~~F~~~~d~~~f~~dl~~~l~~~~gf 421 (766)
T 3eh2_A 342 KTLFQPQTGAYQTLAKECVAQGCCVDLFLFPNQYVDVATLSVVPQLTGGSVYKYASFQVENDQERFLSDLRRDVQKVVGF 421 (766)
T ss_dssp GGGTSCSSTHHHHHHHHHHHHTEEEEEEECCSSCCCHHHHTHHHHHTTCCEEECTTCCHHHHHHHHHHHHHHHHHSCEEE
T ss_pred HHHCCCHHHHHHHHHHHHHHCCEEEEEEEECCCCCCHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCEE
T ss_conf 33206438999999999875786899998148776848787777606966999679860667899999999975325100
Q ss_pred CEEEEEEECCCEEEEEEECCCCCCCCCCEEECCCCCCCCEEEEEEECCCCCCCCEEEEEEEEEEEECCCCEEEEEEEECC
Q ss_conf 24899994899189752068545898933513679998089999730454788505899999988349829999991101
Q 001720 669 EAVMRIRCGKGVRFTNYHGNFMLRSTDLLALPAVDCDKAYAMQLSLEETLLTTQTVYFQVALLYTASCGERRIRVHTLAA 748 (1021)
Q Consensus 669 ~a~lRVR~S~Gl~V~~~~Gnf~~rs~~~~~l~~id~d~Siav~l~~d~~l~~~~~~~iQ~AlLYT~~~GeRRIRV~Tl~l 748 (1021)
+|+||||||+||+|+++||||+++++++|+++++++|+||+|+|+|++++.+...+|||+|++||+.+|+|||||||+++
T Consensus 422 ~a~mrVR~S~glkv~~~~G~~~~~~t~~~~l~~i~~d~s~~v~f~~~~~l~~~~~~~~Q~allYt~~~G~RRiRV~T~~l 501 (766)
T 3eh2_A 422 DAVMRVRTSTGIRAVDFFGAFYMSNTTDVELAGLDGDKTVTVEFKHDDRLNEESGALLQCALLYTSCAGQRRLRIHNLAL 501 (766)
T ss_dssp EEEEEEEECTTEEEEEEEESCBCSSSSCEEEEEEETTCCEEEEEEESSCCCTTTCEEEEEEEEEECTTSCEEEEEEEEEE
T ss_pred EEEEEEEECCCEEEEEEECCEECCCCCCEEECCCCCCCEEEEEEEECCCCCCCCCEEEEEEEEEECCCCCEEEEEEEEEE
T ss_conf 17999995698379886778545897744622579885699999955777788857999999858089988999997744
Q ss_pred CCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 26689889998329858999999999999813999999999999999999999865431158997301451135089999
Q 001720 749 PVVSNLSDMYQQADTGAIVSVFSRLAIEKTLSHKLEDARNAVQLRLVKALKEYRNLYAVQHRLGSRMIYPESLKFLPLYC 828 (1021)
Q Consensus 749 pvt~~l~~vf~s~D~~ai~~~laK~av~~~l~~~l~d~R~~l~~~lv~iL~~YRk~~~a~~~~~gqLiLPesLklLPly~ 828 (1021)
+|++++.++|+++|+||++++|+|+|++++++++++++|+.|+++|+++|++||| +|+..++.+||+|||+||+||+|+
T Consensus 502 ~vt~~~~~v~~~~Dqea~~~llar~av~~~~~~~~~~~R~~l~~~~~~~l~~Yrk-~~~~~~s~~ql~lp~~lkllP~~~ 580 (766)
T 3eh2_A 502 NCCTQLADLYRNCETDTLINYMAKFAYRGVLNSPVKAVRDTLITQCAQILACYRK-NCASPSSAGQLILPECMKLLPVYL 580 (766)
T ss_dssp EEESSHHHHHHTBCHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHHHH-HC------CCCCCCGGGTTHHHHH
T ss_pred EECCCHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH-HCCCCCCCCCEECCHHHHHHHHHH
T ss_conf 7528899999732999999999999998752089999999999999999999986-435888865431677899999999
Q ss_pred HHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCE
Q ss_conf 99620048889999999029999999991899887786250318993148788875677633445310231100258837
Q 001720 829 LAICKSTPIRGGYADVTLDERCAAGYTMMALPVKKLLKLLYPCLIRVDEHLLKPSAQLDEYKNIMKRLPLVAESLDSRGL 908 (1021)
Q Consensus 829 ~~LlKS~~Lr~g~~~~~~D~R~~~~~~l~s~~~~~~~~~lYPrL~~lh~l~~~~~~~~~~~~~lP~~l~LS~e~l~~~gi 908 (1021)
++|+||.+|+.+ .++++|+|+|++++++++++..++.|+||+||++|++. .+...+|++++||.++|+++||
T Consensus 581 ~~L~Ks~~l~~~-~~~s~Der~~~~~~l~~~~~~~~l~~iyP~L~~~h~~~-------~~~~~~P~~v~ls~~~l~~~gi 652 (766)
T 3eh2_A 581 NCVLKSDVLQPG-AEVTTDDRAYVRQLVTSMDVTETNVFFYPRLLPLTKSP-------VESTTEPPAVRASEERLSNGDI 652 (766)
T ss_dssp HHHHTSTTTSCC-TTCCHHHHHHHHHHHHHCCHHHHHHHHSCEEEECSSCC-------CSCC--CCCBCSSGGGCCTTCE
T ss_pred HHHHCCHHHCCC-CCCCCCHHHHHHHHHHCCCHHHHHHHHHHEEEEEECCC-------CCCCCCCCCCCCCHHHCCCCCE
T ss_conf 999756853678-99983399999999977999999998753489962377-------5556689873776887178958
Q ss_pred EEEECCCEEEEEECCCCCHHHHHHHCCCCHHHHH--HCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCC
Q ss_conf 9997694679983489999999751299335431--00013455528799999999999970999774189940699832
Q 001720 909 YIFDDGFRFVLWFGRMLSPDIAMNLLGSEFAAEL--SKVMLREQDNEMSRKLLGILKKLREQDPSYYQLCQLVRQGEQPR 986 (1021)
Q Consensus 909 YLLD~G~~i~lwvG~~v~~~ll~~lFGv~s~~~l--~~~~Lp~~~n~~s~~l~~iI~~lr~~r~~~~~l~~vvrqg~~~~ 986 (1021)
||||+|+.+|||+|+++++++++||||++++.++ ++..||++||++|+++|++|+++|++|..|+++ +|||||++.
T Consensus 653 yLlD~g~~i~lw~G~~v~~~~l~dlFgv~~~~~i~~~~~~lp~~~~~~s~~vr~ii~~lr~~~~~~~~l-~ivr~~~~~- 730 (766)
T 3eh2_A 653 YLLENGLNLFLWVGASVQQGVVQSLFSVSSFSQITSGLSVLPVLDNPLSKKVRGLIDSLRAQRSRYMKL-TVVKQEDKM- 730 (766)
T ss_dssp EEEECSSEEEEEECTTCCHHHHHHHHSCSSGGGSCTTCCSCCCCSSHHHHHHHHHHHHHHTTSSSCCEE-EEEESSSST-
T ss_pred EEEECCCEEEEEECCCCCHHHHHHHCCCCCHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEE-EEEECCCCH-
T ss_conf 999768579999668789899998729984565484446588899879999999999999748887408-999479975-
Q ss_pred HHHHHHHHCCCCCCC-CCCCHHHHHHHHHHHHHCC
Q ss_conf 599998600456999-9998999999999998119
Q 001720 987 EGFLLLANLVEDQIG-GSNGYADWIMQIHRQVLQN 1020 (1021)
Q Consensus 987 ~e~~f~~~LVED~~~-~~~SY~dFL~~lh~~I~~k 1020 (1021)
|.+|.++|||||+. +++||+||||+|||+|++|
T Consensus 731 -~~~f~~~LvED~~~~~~~SY~dfL~~lh~~i~~~ 764 (766)
T 3eh2_A 731 -EMLFKHFLVEDKSLSGGASYVDFLCHMHKEIRQL 764 (766)
T ss_dssp -HHHHHTTCTTSCCTTTCCCHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf -9999984812389999979999999999999975
No 3
>3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle transport, transport signal sequence, cytoplasm, endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B 2nup_B 3egd_B 3egx_B
Probab=1.00 E-value=1 Score=1401.56 Aligned_cols=710 Identities=39% Similarity=0.693 Sum_probs=661.5
Q ss_pred CCCCCCCCCC-CCCCCCEECCCCCCCCCHHHHHHCCCCEEEEECCCCCCCCC-----C-C---CCCCEEECCCEEEECCC
Q ss_conf 9997876522-58999210003645899877751377648898138889999-----8-8---76553781660696089
Q 001720 301 PSSLAETYPL-NCHSRYLRLTTSAIPNSQSLVSRWHLPLGAVVCPLAEPPEG-----N-L---FICRTYVNPYVTFTDAG 370 (1021)
Q Consensus 301 pp~~~~~~~~-N~~P~yiR~T~~~iP~t~~ll~~~~lPlgivv~Pfa~~~~~-----e-~---~rCrAYiNPf~~f~~~G 370 (1021)
.|...+++.. ||+|+|||+|||+||.|++++++++||||++|+||++..+. + . +||||||||||+|.+ |
T Consensus 26 ~~~~~~~~~~~n~~p~~~R~T~n~iP~t~~~~~~~~lPlg~~i~Pl~~~~~~P~v~~~~p~RC~rCrayiNPf~~f~~-~ 104 (751)
T 3eh1_A 26 VPNLNADLKKLNCSPDSFRCTLTNIPQTQALLNKAKLPLGLLLHPFRDLTQLPVITSNTIVRCRSCRTYINPFVSFID-Q 104 (751)
T ss_dssp CCCCCHHHHHHSCCTTTEEESBSSEESSHHHHHHHCCCCEEEECTTCCCSCCCEECCSCCCBCTTTCCBCCTTCEESS-S
T ss_pred CCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCEEEEC-C
T ss_conf 888776100258998857826344789999997278986999853876789994399999746686689078427822-9
Q ss_pred CEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCEEEEEEECCHHHHHHCHHHHHH
Q ss_conf 56997589997899843213458676657978888655543798626665589999976999996526688623799999
Q 001720 371 RKWRCNICALLNDVPGDYFAHLDATGRRIDIDQRPELTKGSVEFVAPTEYMVRPPMPPLYFFLIDVSISAIRSGMLEVVA 450 (1021)
Q Consensus 371 ~~W~CnlC~~~N~vp~~Y~~~l~~~g~r~D~~~rPEL~~gsvEfvap~eY~~rpp~pp~yvFvIDvS~~av~sG~l~~~~ 450 (1021)
++|+||||+..|++|.+|+++. ..+++.|.++||||++|+|||++|+|||+|+|+||+|+||||||++++++|+++++|
T Consensus 105 ~~w~Cn~C~~~N~~P~~y~~~~-~~~~~~d~~~rpEL~~~tvEy~~p~~y~~r~p~pp~yvFvIDvs~~a~~~g~l~~~~ 183 (751)
T 3eh1_A 105 RRWKCNLCYRVNDVPEEFMYNP-LTRSYGEPHKRPEVQNSTVEFIASSDYMLRPPQPAVYLFVLDVSHNAVEAGYLTILC 183 (751)
T ss_dssp SEEECTTTCCEEECCGGGC----------CGGGSHHHHCSEEEEEECGGGCSSSCCCCEEEEEEECSHHHHHHTHHHHHH
T ss_pred CEEECCCCCCCCCCCHHHHCCC-CCCCCCCCCCCCHHCCCEEEEECCHHHHCCCCCCCEEEEEEECCHHHHHHHHHHHHH
T ss_conf 9898255667788977871153-233336744483002522799757665047999857999997527665542999999
Q ss_pred HHHHHHHHCCCCCCCCEEEEEEECCEEEEEECCCCCCCCCEEECCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHCCCCC
Q ss_conf 99999974099999843999997675999826999997614311453223578899652302666999999995289743
Q 001720 451 QTIKSCLDELPGFPRTQIGFITFDSTIHFYNMKSSLTQPQMMVISDLDDIFVPLPDDLLVNLSESRSVVDTLLDSLPSMF 530 (1021)
Q Consensus 451 ~sI~~~L~~Lp~~~rt~VgiITFds~Vhfynl~~~~~~pqmlVvsDldd~f~P~p~~llv~l~esr~~I~~lLe~Lp~~f 530 (1021)
++|+++|+.||++.|++|||||||++||||++++++++++|+|++|++|+|+|.+++|||+++|+++.|+++||+|+++|
T Consensus 184 ~sl~~~L~~lp~~~~~~VG~ITfd~~vh~y~l~~~~~~~qmlvv~dl~d~f~P~~~~~lv~l~e~~~~i~~lL~~Lp~~~ 263 (751)
T 3eh1_A 184 QSLLENLDKLPGDSRTRIGFMTFDSTIHFYNLQEGLSQPQMLIVSDIDDVFLPTPDSLLVNLYESKELIKDLLNALPNMF 263 (751)
T ss_dssp HHHHHHTTTSSCCTTCEEEEEEESSSEEEEECCTTCSSCEEEEESCTTCTTSCCGGGTSEETTTTHHHHHHHHHHGGGTS
T ss_pred HHHHHHHHHCCCCCCCEEEEEEECCEEEEEECCCCCCCCEEECCCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 99999998668986747999996877999977887666413423554445777804420029999999999998546753
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCC
Q ss_conf 58887665469999999999981298899994279998853321368867545897566678888078999999985179
Q 001720 531 QDNMNVESAFGPALKAAFMVMSRLGGKLLIFQNSLPSLGVGCLKLRGDDLRVYGTDKEHSLRIPEDPFYKQMAADLTKFQ 610 (1021)
Q Consensus 531 ~~~~~~~~alG~AL~aA~~lL~~~GGkIivF~s~~Pt~GpG~L~~r~~~~r~~gt~ke~~l~~p~~~fYk~LA~~~~~~g 610 (1021)
.+++++++|+|+||++|..+|+.+||||++|++|+||+|+|+|+.||+ .+..+++||+++++++++||++||++|+++|
T Consensus 264 ~~~~~~~~~~G~AL~aA~~ll~~~GGrI~~F~sg~pt~GpG~l~~r~~-~~~~~~~ke~~~~~~a~~fY~~la~~~~~~~ 342 (751)
T 3eh1_A 264 TNTRETHSALGPALQAAFKLMSPTGGRVSVFQTQLPSLGAGLLQSRED-PNQRSSTKVVQHLGPATDFYKKLALDCSGQQ 342 (751)
T ss_dssp TTCSCCCCCHHHHHHHHHHHHTTTCEEEEEEECSCCCSSTTCCCCCCC-SCGGGGSSSCTTCSCSCSHHHHHHHHHHHTT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCC-CCCCCCCHHHHHHCCHHHHHHHHHHHHHHCC
T ss_conf 378887644599999999985147977999955799778875545555-5557870156550516899999999998659
Q ss_pred CEEEEEEECCCCCCHHHHHHHCCCCCCEEEEECCCCCCH---HHHHHHHHHHHHCCCCCCCCEEEEEEECCCEEEEEEEC
Q ss_conf 189999723897681214421134540899919998752---57799999998302444342489999489918975206
Q 001720 611 IAVNVYAFSDKYTDIASLGTLAKYTGGQVYYYPSFQSTT---HGERLRHELSRDLTRETAWEAVMRIRCGKGVRFTNYHG 687 (1021)
Q Consensus 611 IsVDlFl~s~~~~Diatl~~L~~~TGG~i~~Y~~F~~~~---d~~kl~~dL~r~ltr~~g~~a~lRVR~S~Gl~V~~~~G 687 (1021)
|+||+|+++.+|+|+|+|+.|++.|||.+++|++|+.+. +.++|.+||+|.+++++||+|+||||||+||+|+++||
T Consensus 343 i~VDlF~~s~~~~dlatl~~l~~~TGG~v~~y~~F~~~~~~~~~~~f~~dl~r~l~~~~gf~a~mrVR~S~glkv~~~~G 422 (751)
T 3eh1_A 343 TAVDLFLLSSQYSDLASLACMSKYSAGCIYYYPSFHYTHNPSQAEKLQKDLKRYLTRKIGFEAVMRIRCTKGLSMHTFHG 422 (751)
T ss_dssp EEEEEEECCSSCCCHHHHTHHHHTTTCCEEECTTCBTTTBHHHHHHHHHHHHHHHHSCCEEEEEEEEEECTTEEEEEEES
T ss_pred CEEEEEECCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCEEEEEEEC
T ss_conf 62799971675567186777776068669996786543462688999999999986540232589997069848877667
Q ss_pred CCCCCCCCCEEECCCCCCCCEEEEEEECCCCCCCCEEEEEEEEEEEECCCCEEEEEEEECCCCCCCHHHHHHHCCHHHHH
Q ss_conf 85458989335136799980899997304547885058999999883498299999911012668988999832985899
Q 001720 688 NFMLRSTDLLALPAVDCDKAYAMQLSLEETLLTTQTVYFQVALLYTASCGERRIRVHTLAAPVVSNLSDMYQQADTGAIV 767 (1021)
Q Consensus 688 nf~~rs~~~~~l~~id~d~Siav~l~~d~~l~~~~~~~iQ~AlLYT~~~GeRRIRV~Tl~lpvt~~l~~vf~s~D~~ai~ 767 (1021)
||+.+++++|+++++++|++|+|+|+|++++.+...+|||+|++||+.+|||||||||++++|++++.++|+++|+||++
T Consensus 423 ~~~~~~t~~~~l~~i~~d~s~~v~~~~~~~l~~~~~~~~Q~allYT~~~G~RRiRV~T~~l~vt~~~~~v~~~~DqeA~~ 502 (751)
T 3eh1_A 423 NFFVRSTDLLSLANINPDAGFAVQLSIEESLTDTSLVCFQTALLYTSSKGERRIRVHTLCLPVVSSLADVYAGVDVQAAI 502 (751)
T ss_dssp SSEECSSSEEEEEEECTTCCEEEEEEESSCCCSCSEEEEEEEEEEECTTSCEEEEEEEEEEEEECSHHHHHHTBCHHHHH
T ss_pred CEEECCCCCEEECCCCCCCEEEEEEEECCCCCCCCCEEEEEEEEEECCCCCEEEEEEEECCCCCCCHHHHHHHCCHHHHH
T ss_conf 75817987367126797878999999757777888459999894562899889999986421258899998735999999
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCH
Q ss_conf 99999999998139999999999999999999998654311589973014511350899999962004888999999902
Q 001720 768 SVFSRLAIEKTLSHKLEDARNAVQLRLVKALKEYRNLYAVQHRLGSRMIYPESLKFLPLYCLAICKSTPIRGGYADVTLD 847 (1021)
Q Consensus 768 ~~laK~av~~~l~~~l~d~R~~l~~~lv~iL~~YRk~~~a~~~~~gqLiLPesLklLPly~~~LlKS~~Lr~g~~~~~~D 847 (1021)
++|+|+|+++++++++.|+|++++++|++++++||+ +|.. ..++||+|||+||+||+|+++|+||.+|+.+ .++++|
T Consensus 503 ~llar~av~~~~~~~l~d~r~~l~~~li~il~~Yr~-~~~~-~~~~~l~lpe~lkllP~~~~~L~Ks~~~~~~-~~~s~D 579 (751)
T 3eh1_A 503 CLLANMAVDRSVSSSLSDARDALVNAVVDSLSAYGS-TVSN-LQHSALMAPSSLKLFPLYVLALLKQKAFRTG-TSTRLD 579 (751)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHT-TCC------CCEEEGGGTTHHHHHHHHHTSTTTCCS-SCCCHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH-HCCC-CCCCCCCCCHHHHHHHHHHHHHHCCHHHCCC-CCCCHH
T ss_conf 999999999874199999999999999999999987-5456-8886511767788999999999733853588-999910
Q ss_pred HHHHHHHHHCCCCHHHHHHHHCCCEEEEECCCCCCCCC-CCCCCCCCCCCCCCHHHCCCCCEEEEECCCEEEEEECCCCC
Q ss_conf 99999999918998877862503189931487888756-77633445310231100258837999769467998348999
Q 001720 848 ERCAAGYTMMALPVKKLLKLLYPCLIRVDEHLLKPSAQ-LDEYKNIMKRLPLVAESLDSRGLYIFDDGFRFVLWFGRMLS 926 (1021)
Q Consensus 848 ~R~~~~~~l~s~~~~~~~~~lYPrL~~lh~l~~~~~~~-~~~~~~lP~~l~LS~e~l~~~giYLLD~G~~i~lwvG~~v~ 926 (1021)
+|+|++++++++++..++.|+||+||++|++..+.... +++.+.+|..++||.++|+++||||||||+.+|||+|++++
T Consensus 580 er~~~~~~l~~~~~~~~~~~iyP~L~~~h~l~~~~~~~~~~~~~~~P~~l~ls~~~l~~~giyLlD~g~~i~lw~G~~v~ 659 (751)
T 3eh1_A 580 DRVYAMCQIKSQPLVHLMKMIHPNLYRIDRLTDEGAVHVNDRIVPQPPLQKLSAEKLTREGAFLMDCGSVFYIWVGKGCD 659 (751)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHSCEEEECTTCCSTTCEEETTEEECCCCCBCSSGGGCCTTSEEEEECSSEEEEEECTTCC
T ss_pred HHHHHHHHHHCCCHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCEEEEECCCEEEEEECCCCC
T ss_conf 99999999967999998864266289820476335756688766789734677988225878999789889999779899
Q ss_pred HHHHHHHCCCCHHHHH--HCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHCCCCCCCCCC
Q ss_conf 9999751299335431--00013455528799999999999970999774189940699832599998600456999999
Q 001720 927 PDIAMNLLGSEFAAEL--SKVMLREQDNEMSRKLLGILKKLREQDPSYYQLCQLVRQGEQPREGFLLLANLVEDQIGGSN 1004 (1021)
Q Consensus 927 ~~ll~~lFGv~s~~~l--~~~~Lp~~~n~~s~~l~~iI~~lr~~r~~~~~l~~vvrqg~~~~~e~~f~~~LVED~~~~~~ 1004 (1021)
+++++||||++++.++ ....||++||++|+++|++|+++|++|..++.+ +|+|||++. |.+|.++|||||+++++
T Consensus 660 ~~ll~dlFGv~~~~~~~~~~~~lp~~~t~~s~~vr~ii~~lr~~r~~~~~l-~vvr~~~~~--~~~f~~~LvED~~~~~~ 736 (751)
T 3eh1_A 660 NNFIEDVLGYTNFASIPQKMTHLPELDTLSSERARSFITWLRDSRPLSPIL-HIVKDESPA--KAEFFQHLIEDRTEAAF 736 (751)
T ss_dssp HHHHHHTTCCSSGGGCCSSBCCCCCCSSHHHHHHHHHHHHHHHTSSSCCEE-EEEESSSSS--HHHHHTTCTTSCBTTBC
T ss_pred HHHHHHHCCCCCHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEE-EEEECCCCH--HHHHHHHCCCCCCCCCC
T ss_conf 899999709994553685335687778878999999999998509876459-999589846--99999847343999999
Q ss_pred CHHHHHHHHHHHHHC
Q ss_conf 899999999999811
Q 001720 1005 GYADWIMQIHRQVLQ 1019 (1021)
Q Consensus 1005 SY~dFL~~lh~~I~~ 1019 (1021)
||+||||+|||+|++
T Consensus 737 SY~~fL~~~h~~i~~ 751 (751)
T 3eh1_A 737 SYYEFLLHVQQQICK 751 (751)
T ss_dssp CHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHCC
T ss_conf 999999999998419
No 4
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1
Probab=1.00 E-value=1 Score=1398.23 Aligned_cols=752 Identities=30% Similarity=0.543 Sum_probs=685.0
Q ss_pred CCCCCCCCC-CCCCCCCCC-----CCCCCCCCCCCCCCCCCCCCCCCCCCCC-----CCCCC----CCCCCCEECCCCCC
Q ss_conf 742233111-234677899-----9998899889999999999999999978-----76522----58999210003645
Q 001720 260 VGVIQGLAE-DFSSLSFGS-----IPGSIEPGIDLKSLPRPLDGDVEPSSLA-----ETYPL----NCHSRYLRLTTSAI 324 (1021)
Q Consensus 260 ~~~~~~~~~-~~~~~~~~~-----~~~~~dp~~~~~~ip~p~~~~~~pp~~~-----~~~~~----N~~P~yiR~T~~~i 324 (1021)
.++++++++ +|+.|++|. ..+.+.+.-=..++|.++....+||+.. +.|++ ||+|+|||+|||+|
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ppp~~~~~~~~~~~~~d~gn~~p~~vR~T~n~i 189 (926)
T 1m2v_B 110 QQQQQPMAAPAYGQPSAAMGQNMRPMNQLYPIDLLTELPPPITDLTLPPPPLVIPPERMLVPSELSNASPDYIRSTLNAV 189 (926)
T ss_dssp -----------------------CCCCCCCEEETTTSCSCCCSGGGSCCCCCCCCGGGSSSCSSSSSCCTTTEEESBSSE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCC
T ss_conf 65656533111012676766666675662232220157999754579999777899861114557789988446411447
Q ss_pred CCCHHHHHHCCCCEEEEECCCCCCCCCCC-------------CCCCEEECCCEEEECCCCEEEECCCCCCCCCCCCCCCC
Q ss_conf 89987775137764889813888999988-------------76553781660696089569975899978998432134
Q 001720 325 PNSQSLVSRWHLPLGAVVCPLAEPPEGNL-------------FICRTYVNPYVTFTDAGRKWRCNICALLNDVPGDYFAH 391 (1021)
Q Consensus 325 P~t~~ll~~~~lPlgivv~Pfa~~~~~e~-------------~rCrAYiNPf~~f~~~G~~W~CnlC~~~N~vp~~Y~~~ 391 (1021)
|.|++++++++||||++|+||+...+.++ +||||||||||+|+++|++|+||||++.|++|.+|+
T Consensus 190 P~t~~l~~~~~lPlg~vv~P~a~~~~~~~~vpvv~~~~pvRC~rCrAYiNPf~~~~~~g~~W~CnfC~~~N~~P~~Y~-- 267 (926)
T 1m2v_B 190 PKNSSLLKKSKLPFGLVIRPYQHLYDDIDPPPLNEDGLIVRCRRCRSYMNPFVTFIEQGRRWRCNFCRLANDVPMQMD-- 267 (926)
T ss_dssp ESBHHHHHHHTCCCEEEECSCCSSSTTSSCCCEECSCCCCBCSSSCCBCCTTCEEETTTTEEECTTTCCEEECCGGGT--
T ss_pred CCCHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCEEEECCCCEEECCCCCCCCCCCHHHC--
T ss_conf 999999972789848998527776667788870389999736985588168259937998798547898789966652--
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCEEEEEEECCHHHHHHCHHHHHHHHHHHHHHCCCC-CCCCEEEE
Q ss_conf 58676657978888655543798626665589999976999996526688623799999999999740999-99843999
Q 001720 392 LDATGRRIDIDQRPELTKGSVEFVAPTEYMVRPPMPPLYFFLIDVSISAIRSGMLEVVAQTIKSCLDELPG-FPRTQIGF 470 (1021)
Q Consensus 392 l~~~g~r~D~~~rPEL~~gsvEfvap~eY~~rpp~pp~yvFvIDvS~~av~sG~l~~~~~sI~~~L~~Lp~-~~rt~Vgi 470 (1021)
.+.+|+|.|+++||||++++|||++|+||++|+++||+|+||||||++++++|+++++|++|+.+|+.||+ +++++|||
T Consensus 268 ~~~~~~~~d~~~RpEL~~~tvEyi~p~ey~~r~p~ppvyvFvIDvS~~av~~g~l~~l~~sI~~~L~~LP~~~~~~~VGl 347 (926)
T 1m2v_B 268 QSDPNDPKSRYDRNEIKCAVMEYMAPKEYTLRQPPPATYCFLIDVSQSSIKSGLLATTINTLLQNLDSIPNHDERTRISI 347 (926)
T ss_dssp TTSTTCGGGGGGSHHHHCSEEEEECCGGGCSSCCCCCBEEEEEECSHHHHHSCHHHHHHHHHHHTTTTSCCTTSCCEECE
T ss_pred CCCCCCCCCCCCCCCCCCCEEEEECCHHHCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEE
T ss_conf 45446856401274215762899727021147999868999998977887622999999999999985778788727999
Q ss_pred EEECCEEEEEECCCCCC-------CCCEEECCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHH
Q ss_conf 99767599982699999-------76143114532235788996523026669999999952897435888766546999
Q 001720 471 ITFDSTIHFYNMKSSLT-------QPQMMVISDLDDIFVPLPDDLLVNLSESRSVVDTLLDSLPSMFQDNMNVESAFGPA 543 (1021)
Q Consensus 471 ITFds~Vhfynl~~~~~-------~pqmlVvsDldd~f~P~p~~llv~l~esr~~I~~lLe~Lp~~f~~~~~~~~alG~A 543 (1021)
||||++||||+++.+.. +++|+|++|+||+|+|++++||++++||++.|+++||+|+.+|.++++.++|+|+|
T Consensus 348 ITFds~Vh~y~l~~~~~g~k~~~~q~qmlvvsdl~d~f~P~~~~~Lv~l~e~~~~I~~lLe~L~~~~~~~~~~~~~~G~A 427 (926)
T 1m2v_B 348 LCVDNAIHYFKIPLDSENNEESADQINMMDIADLEEPFLPRPNSMVVSLKACRQNIETLLTKIPQIFQSNLITNFALGPA 427 (926)
T ss_dssp EEESSSEEEEECCCC---------CCEEEEECCCSSCCCSCSSSSSEETTTTHHHHHHHHHHHHHHTSSCCCCCCCHHHH
T ss_pred EEECCEEEEEECCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHH
T ss_conf 99898799995677666774441261211445621146778422133189999999999986165404788887428999
Q ss_pred HHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCHHHHHHHHHHHHCCCEEEEEEECCCC
Q ss_conf 99999999812988999942799988533213688675458975666-78888078999999985179189999723897
Q 001720 544 LKAAFMVMSRLGGKLLIFQNSLPSLGVGCLKLRGDDLRVYGTDKEHS-LRIPEDPFYKQMAADLTKFQIAVNVYAFSDKY 622 (1021)
Q Consensus 544 L~aA~~lL~~~GGkIivF~s~~Pt~GpG~L~~r~~~~r~~gt~ke~~-l~~p~~~fYk~LA~~~~~~gIsVDlFl~s~~~ 622 (1021)
|++|..+|+.+||||++|++|+||+|+|+|+.|++ .+.++++||+. +++++++||++||++|+++||+||||+++.+|
T Consensus 428 L~aA~~lL~~~GGrI~~F~sg~Pt~GpG~l~~re~-~~~~~~~ke~~~ll~~a~~FYk~LA~~~~~~gisVDlF~~s~~~ 506 (926)
T 1m2v_B 428 LKSAYHLIGGVGGKIIVVSGTLPNLGIGKLQRRNE-SGVVNTSKETAQLLSCQDSFYKNFTIDCSKVQITVDLFLASEDY 506 (926)
T ss_dssp HHHHHHHHTTTCEEEEEEESSCCCSSTTCCCCCCC-----CCTTHHHHHTSCSSTHHHHHHHHHHHHTEEEEEEEEESSC
T ss_pred HHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCC-CCCCCCCCCHHHHCCCHHHHHHHHHHHHHHCCEEEEEEECCCCC
T ss_conf 99999999851988999956899778876656631-00168531023313510799999999999769379999736877
Q ss_pred CCHHHHHHHCCCCCCEEEEECCCCCCH--HHHHHHHHHHHHCCCCCCCCEEEEEEECCCEEEEEEECCCCCCCCCCEEEC
Q ss_conf 681214421134540899919998752--577999999983024443424899994899189752068545898933513
Q 001720 623 TDIASLGTLAKYTGGQVYYYPSFQSTT--HGERLRHELSRDLTRETAWEAVMRIRCGKGVRFTNYHGNFMLRSTDLLALP 700 (1021)
Q Consensus 623 ~Diatl~~L~~~TGG~i~~Y~~F~~~~--d~~kl~~dL~r~ltr~~g~~a~lRVR~S~Gl~V~~~~Gnf~~rs~~~~~l~ 700 (1021)
+|+++|+.|++.|||.+++|+.|+.++ |..+|.+|+.+.|++++||+|+||||||+||+|+++||||+.+++++|+++
T Consensus 507 vdla~l~~l~~~TGG~v~~y~~F~~~~~~d~~kf~~dl~~~Lt~~~gf~a~mrVR~S~glkv~~~~G~~~~~~s~~~~l~ 586 (926)
T 1m2v_B 507 MDVASLSNLSRFTAGQTHFYPGFSGKNPNDIVKFSTEFAKHISMDFCMETVMRARGSTGLRMSRFYGHFFNRSSDLCAFS 586 (926)
T ss_dssp CCHHHHHHHHHTTTCCEEEEESCCTTSHHHHHHHHHHHHHHHHSCCEEEEEEEEEECTTEEEEEEESSSBCSSTTEEEEE
T ss_pred CCHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCEEEEEEEEECCCCEEEEEECCCCCCCCCCEEEE
T ss_conf 68388887876379669981887621266799999999977554300347999980798079874367244676766730
Q ss_pred CCCCCCCEEEEEEECCCCCCCCEEEEEEEEEEEECCCCEEEEEEEECCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHC
Q ss_conf 67999808999973045478850589999998834982999999110126689889998329858999999999999813
Q 001720 701 AVDCDKAYAMQLSLEETLLTTQTVYFQVALLYTASCGERRIRVHTLAAPVVSNLSDMYQQADTGAIVSVFSRLAIEKTLS 780 (1021)
Q Consensus 701 ~id~d~Siav~l~~d~~l~~~~~~~iQ~AlLYT~~~GeRRIRV~Tl~lpvt~~l~~vf~s~D~~ai~~~laK~av~~~l~ 780 (1021)
++++|+||+|+|++++++. ...+|||+|++||+.+|+|||||||++++|++++.++|+++|+||++++|+|+|++++++
T Consensus 587 ~l~~d~s~av~f~~~~~l~-~~~~~~Q~allYT~~~G~RRiRV~T~~l~vt~~l~~v~~s~Dqea~~~llar~av~~~~~ 665 (926)
T 1m2v_B 587 TMPRDQSYLFEVNVDESIM-ADYCYVQVAVLLSLNNSQRRIRIITLAMPTTESLAEVYASADQLAIASFYNSKAVEKALN 665 (926)
T ss_dssp EECSSCCEEEEEEECSBCC-SSEEEEEEEEEEEETTTEEEEEEEEEEEEEESCHHHHHHTBCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEEEEECCCCC-CCCEEEEEEEEEECCCCCEEEEEEEECCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHC
T ss_conf 5688877999999656778-885799999988869997899999405556688999998529999999999999987630
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC--CCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCC
Q ss_conf 999999999999999999999865431158997--301451135089999996200488899999990299999999918
Q 001720 781 HKLEDARNAVQLRLVKALKEYRNLYAVQHRLGS--RMIYPESLKFLPLYCLAICKSTPIRGGYADVTLDERCAAGYTMMA 858 (1021)
Q Consensus 781 ~~l~d~R~~l~~~lv~iL~~YRk~~~a~~~~~g--qLiLPesLklLPly~~~LlKS~~Lr~g~~~~~~D~R~~~~~~l~s 858 (1021)
+++.|+|++|+++|+++|++||| +|+..+..+ +|+|||+||+||+|+++|+||.+|+ + .+.+.|||+|+++++++
T Consensus 666 ~~~~d~r~~L~~~li~il~~Yrk-~~~~~~~~~~~sl~Lp~~lkllP~~~~~L~KS~~l~-~-~~~p~Dera~~~~~l~~ 742 (926)
T 1m2v_B 666 SSLDDARVLINKSVQDILATYKK-EIVVSNTAGGAPLRLCANLRMFPLLMHSLTKHMAFR-S-GIVPSDHRASALNNLES 742 (926)
T ss_dssp SCSHHHHHHHHHHHHHHHHHHHH-HTCCCTTSSSSCCEEEGGGTTHHHHHHHHHTSTTTC-S-SCCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH-HCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHC-C-CCCCCCHHHHHHHHHHC
T ss_conf 88999999999999999999864-144456777753206778999999999986154107-9-99891399999999985
Q ss_pred CCHHHHHHHHCCCEEEEECCCCCCC-------CCCCCCCCCCCCCCCCHHHCCCCCEEEEECCCEEEEEECCCCCHHHHH
Q ss_conf 9988778625031899314878887-------567763344531023110025883799976946799834899999997
Q 001720 859 LPVKKLLKLLYPCLIRVDEHLLKPS-------AQLDEYKNIMKRLPLVAESLDSRGLYIFDDGFRFVLWFGRMLSPDIAM 931 (1021)
Q Consensus 859 ~~~~~~~~~lYPrL~~lh~l~~~~~-------~~~~~~~~lP~~l~LS~e~l~~~giYLLD~G~~i~lwvG~~v~~~ll~ 931 (1021)
+++..++.|+||+||++|++..+.. ..+++++.+|++++||.++|+++|+||||+|..||+|+|+.+++++++
T Consensus 743 ~~~~~l~~~iyP~L~s~h~~~~~~g~~~~~~~~~~~~~~~~P~~l~Ls~~~l~~~g~yLld~G~~i~lWvG~~~~p~ll~ 822 (926)
T 1m2v_B 743 LPLKYLIKNIYPDVYSLHDMADEAGLPVQTEDGEATGTIVLPQPINATSSLFERYGLYLIDNGNELFLWMGGDAVPALVF 822 (926)
T ss_dssp SCHHHHHHHHSCEEEETTTCCSSCSCC---------CCCCCCCCBCSCSTTCCTTCEEEEECSSEEEEEECTTCCSGGGC
T ss_pred CCHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCEEEEECCCEEEEEECCCCCHHHHH
T ss_conf 99999997406768970357501266433445555565356874067699836698899987988999966889979999
Q ss_pred HHCCCCHHHHH--HCCCCCCC-CHHHHHHHHHHHHHHHHHCC--CCCCEEEEECCCCCC------------CHHHHHHHH
Q ss_conf 51299335431--00013455-52879999999999997099--977418994069983------------259999860
Q 001720 932 NLLGSEFAAEL--SKVMLREQ-DNEMSRKLLGILKKLREQDP--SYYQLCQLVRQGEQP------------REGFLLLAN 994 (1021)
Q Consensus 932 ~lFGv~s~~~l--~~~~Lp~~-~n~~s~~l~~iI~~lr~~r~--~~~~l~~vvrqg~~~------------~~e~~f~~~ 994 (1021)
|+||++++.++ ++..||++ +|++++++|++|++||++|. .++++ +||||+++. ..|.||.++
T Consensus 823 dlFg~~~~~~i~~~~~~lp~l~~~~~s~~lr~iI~~lr~~r~~~~~~~l-~ivr~~~~~~~~~~~~~~~~~~~~~~f~~~ 901 (926)
T 1m2v_B 823 DVFGTQDIFDIPIGKQEIPVVENSEFNQRVRNIINQLRNHDDVITYQSL-YIVRGASLSEPVNHASAREVATLRLWASST 901 (926)
T ss_dssp -------------------------CHHHHHHHHHHTTCCSSCCCCCEE-EEEC------------CCHHHHHHHHHHHT
T ss_pred HHHCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEE-EEEECCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 8728873544474324476678986999999999999975788777428-999468888743221110014589999974
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 0456999999899999999999811
Q 001720 995 LVEDQIGGSNGYADWIMQIHRQVLQ 1019 (1021)
Q Consensus 995 LVED~~~~~~SY~dFL~~lh~~I~~ 1019 (1021)
||||++++++||+||||+|||+|++
T Consensus 902 LvED~~~~~~SY~dfL~~lh~~i~~ 926 (926)
T 1m2v_B 902 LVEDKILNNESYREFLQIMKARISK 926 (926)
T ss_dssp CTTSSCTTCCCHHHHHHHHHHHHCC
T ss_pred CEECCCCCCCCHHHHHHHHHHHHHC
T ss_conf 8660889989999999999999629
No 5
>1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A
Probab=1.00 E-value=1 Score=1368.77 Aligned_cols=707 Identities=31% Similarity=0.569 Sum_probs=659.9
Q ss_pred CCCCCC----CCCCCCEECCCCCCCCCHHHHHHCCCCEEEEECCCCCCCCCCC-------------CCCCEEECCCEEEE
Q ss_conf 876522----5899921000364589987775137764889813888999988-------------76553781660696
Q 001720 305 AETYPL----NCHSRYLRLTTSAIPNSQSLVSRWHLPLGAVVCPLAEPPEGNL-------------FICRTYVNPYVTFT 367 (1021)
Q Consensus 305 ~~~~~~----N~~P~yiR~T~~~iP~t~~ll~~~~lPlgivv~Pfa~~~~~e~-------------~rCrAYiNPf~~f~ 367 (1021)
.+.|++ ||+|+|||+|||+||.|++++++++||||++|+||+...+.++ +||||||||||+|+
T Consensus 50 ~~~~~~~d~~n~~p~~vR~T~n~iP~t~~~~~~~~lPlg~vv~P~~~~~~~~~~~pvv~~~~pvRC~~CrayiNPf~~~~ 129 (810)
T 1pcx_A 50 ERMLVPSELSNASPDYIRSTLNAVPKNSSLLKKSKLPFGLVIRPYQHLYDDIDPPPLNEDGLIVRCRRCRSYMNPFVTFI 129 (810)
T ss_dssp GGSSSCSGGGSCCTTTEEESBSSEESSHHHHHHHTCCCEEEECSCCSSSTTSSCCCEECSCCCCBCTTTCCBCCTTCEEE
T ss_pred CCCCCCCCCCCCCCCCEEEECCCCCCCHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCEEEE
T ss_conf 87110455778998824632144799999997279985999961776666788887038999973698558806825993
Q ss_pred CCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCEEEEEEECCHHHHHHCHHH
Q ss_conf 08956997589997899843213458676657978888655543798626665589999976999996526688623799
Q 001720 368 DAGRKWRCNICALLNDVPGDYFAHLDATGRRIDIDQRPELTKGSVEFVAPTEYMVRPPMPPLYFFLIDVSISAIRSGMLE 447 (1021)
Q Consensus 368 ~~G~~W~CnlC~~~N~vp~~Y~~~l~~~g~r~D~~~rPEL~~gsvEfvap~eY~~rpp~pp~yvFvIDvS~~av~sG~l~ 447 (1021)
++|++|+||||++.|++|.+|+ .+++|+|.|+++||||++++|||++|+||++|+++||+|+||||||++++++|+++
T Consensus 130 ~~g~~W~C~~C~~~N~~P~~y~--~~~~~~~~d~~~RpEL~~~tvEy~~p~~y~~~~p~pp~yvFvIDvs~~av~~g~l~ 207 (810)
T 1pcx_A 130 EQGRRWRCNFCRLANDVPMQMD--QSDPNDPKSRYDRNEIKCAVMEYMAPKEYTLRQPPPATYCFLIDVSQSSIKSGLLA 207 (810)
T ss_dssp TTTTEEECTTTCCEEECCGGGG--C-----CCCGGGSHHHHCSEEEEECCGGGCSSCCCCCEEEEEEECSHHHHHHTHHH
T ss_pred CCCCEEECCCCCCCCCCCHHHC--CCCCCCCCCCCCCCCCCCCEEEEECCCHHCCCCCCCCEEEEEEECCHHHHHHHHHH
T ss_conf 7998798557898589966651--45446856401274225763999827021147999868999998976887612999
Q ss_pred HHHHHHHHHHHCCCC-CCCCEEEEEEECCEEEEEECCCCCC-------CCCEEECCCCCCCCCCCCCCCCEEHHHHHHHH
Q ss_conf 999999999740999-9984399999767599982699999-------76143114532235788996523026669999
Q 001720 448 VVAQTIKSCLDELPG-FPRTQIGFITFDSTIHFYNMKSSLT-------QPQMMVISDLDDIFVPLPDDLLVNLSESRSVV 519 (1021)
Q Consensus 448 ~~~~sI~~~L~~Lp~-~~rt~VgiITFds~Vhfynl~~~~~-------~pqmlVvsDldd~f~P~p~~llv~l~esr~~I 519 (1021)
++|++|+.+|+.||+ +++++|||||||++||||+++.+.. +++|++++|++|+|+|++++||++++|+++.|
T Consensus 208 ~~~~si~~~L~~Lp~~~~~~~VGlITfd~~V~~~~l~~~~~g~k~~~~q~~mlvv~dl~d~f~P~~~~~Lv~l~e~~~~i 287 (810)
T 1pcx_A 208 TTINTLLQNLDSIPNHDERTRISILCVDNAIHYFKIPLDSENNEESADQINMMDIADLEEPFLPRPNSMVVSLKACRQNI 287 (810)
T ss_dssp HHHHHHHHHTTTSCCTTSCCEEEEEEESSSEEEEECCCGGGC-------CEEECCCCTTCC-----TTTSEETTTTHHHH
T ss_pred HHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEECCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf 99999999998577778773799999898799995676556764420261210335600036777301166589999999
Q ss_pred HHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCHH
Q ss_conf 99995289743588876654699999999999812988999942799988533213688675458975666-78888078
Q 001720 520 DTLLDSLPSMFQDNMNVESAFGPALKAAFMVMSRLGGKLLIFQNSLPSLGVGCLKLRGDDLRVYGTDKEHS-LRIPEDPF 598 (1021)
Q Consensus 520 ~~lLe~Lp~~f~~~~~~~~alG~AL~aA~~lL~~~GGkIivF~s~~Pt~GpG~L~~r~~~~r~~gt~ke~~-l~~p~~~f 598 (1021)
+++||+|+.+|.++++.++|+|+||++|..+|+..||||++|++|+||+|+|+|+.|++ .+.++++||+. +++++++|
T Consensus 288 ~~lL~~L~~~~~~~~~~~~a~G~AL~~A~~lL~~~GGrI~~F~sg~pt~GpG~l~~r~~-~~~~~~~ke~~~l~~~a~~f 366 (810)
T 1pcx_A 288 ETLLTKIPQIFQSNLITNFALGPALKSAYHLIGGVGGKIIVVSGTLPNLGIGKLQRRNE-SGVVNTSKETAQLLSCQDSF 366 (810)
T ss_dssp HHHHHHHHHHTTTCCCCCCCHHHHHHHHHHHHTTTCEEEEEEESSCCCSSTTCCCC---------------------CCH
T ss_pred HHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCC-CCCCCCCCCHHHHCCCCHHH
T ss_conf 99998543430578888751899999999998742988999956799778876666531-00168631012313621699
Q ss_pred HHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHCCCCCCEEEEECCCCCCH--HHHHHHHHHHHHCCCCCCCCEEEEEEE
Q ss_conf 999999985179189999723897681214421134540899919998752--577999999983024443424899994
Q 001720 599 YKQMAADLTKFQIAVNVYAFSDKYTDIASLGTLAKYTGGQVYYYPSFQSTT--HGERLRHELSRDLTRETAWEAVMRIRC 676 (1021)
Q Consensus 599 Yk~LA~~~~~~gIsVDlFl~s~~~~Diatl~~L~~~TGG~i~~Y~~F~~~~--d~~kl~~dL~r~ltr~~g~~a~lRVR~ 676 (1021)
|++||++|+++||+||+|+++.+|+|+++|+.|++.|||.+++|++|+.++ |..+|.+|+.+.|++++||+|+|||||
T Consensus 367 Y~~la~~~~~~gi~VDlF~~s~~~~dla~l~~l~~~TGG~v~~y~~F~~~~~~d~~~f~~dl~~~l~~~~gf~a~mrVR~ 446 (810)
T 1pcx_A 367 YKNFTIDCSKVQITVDLFLASEDYMDVASLSNLSRFTAGQTHFYPGFSGKNPNDIVKFSTEFAKHISMDFCMETVMRARG 446 (810)
T ss_dssp HHHHHHHHHHTTEEEEEEEEESSCCCHHHHHHHHHTTTCCEEEEETCCTTSHHHHHHHHHHHHHHHHCCCCEEEEEEEEE
T ss_pred HHHHHHHHHHCCEEEEEEECCCCCCCHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCEEEEEEEEC
T ss_conf 99999999977938999981687658599987775379679982897512367799999999987654203027999980
Q ss_pred CCCEEEEEEECCCCCCCCCCEEECCCCCCCCEEEEEEECCCCCCCCEEEEEEEEEEEECCCCEEEEEEEECCCCCCCHHH
Q ss_conf 89918975206854589893351367999808999973045478850589999998834982999999110126689889
Q 001720 677 GKGVRFTNYHGNFMLRSTDLLALPAVDCDKAYAMQLSLEETLLTTQTVYFQVALLYTASCGERRIRVHTLAAPVVSNLSD 756 (1021)
Q Consensus 677 S~Gl~V~~~~Gnf~~rs~~~~~l~~id~d~Siav~l~~d~~l~~~~~~~iQ~AlLYT~~~GeRRIRV~Tl~lpvt~~l~~ 756 (1021)
|+||+|+++||||+.+++++|+++++++|+||+|+|++++++. ...+|||+|++||+.+|+|||||||++++|++++.+
T Consensus 447 S~gl~v~~~~G~~~~~~~~~~~l~~~~~d~s~~v~f~~~~~l~-~~~~~~Q~allYt~~~G~RRiRV~T~~~~vt~~~~~ 525 (810)
T 1pcx_A 447 STGLRMSRFYGHFFNRSSDLCAFSTMPRDQSYLFEVNVDESIM-ADYCYVQVAVLLSLNNSQRRIRIITLAMPTTESLAE 525 (810)
T ss_dssp CTTEEEEEEESSSBCSSSSEEEESSCCSSCCEEEEEEECSCCC-SSEEEEEEEEEEECTTSCEEEEEEEEEEEEESCHHH
T ss_pred CCCEEEEEEECCCCCCCCCCEEEECCCCCCEEEEEEEECCCCC-CCCEEEEEEEEEECCCCCEEEEEEECCCCCCCCHHH
T ss_conf 7980798744672546767668305798877999999656778-886799999988869997899999137556688999
Q ss_pred HHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC--CCCCCCCCCCHHHHHHHHHHC
Q ss_conf 998329858999999999999813999999999999999999999865431158997--301451135089999996200
Q 001720 757 MYQQADTGAIVSVFSRLAIEKTLSHKLEDARNAVQLRLVKALKEYRNLYAVQHRLGS--RMIYPESLKFLPLYCLAICKS 834 (1021)
Q Consensus 757 vf~s~D~~ai~~~laK~av~~~l~~~l~d~R~~l~~~lv~iL~~YRk~~~a~~~~~g--qLiLPesLklLPly~~~LlKS 834 (1021)
+|+++|+||++++|+|+|+++++++++.|+|++|+++|+++|++||| +|+..+.++ +|+|||+||+||+|+++|+||
T Consensus 526 v~~~~Dqea~~~llar~av~~~~~~~~~d~r~~l~~~li~il~~Yrk-~~~~~~~~~~~~l~lp~~lkllP~~~~~L~ks 604 (810)
T 1pcx_A 526 VYASADQLAIASFYNSKAVEKALNSSLDDARVLINKSVQDILATYKK-EIVVSNTAGGAPLRLCANLRMFPLLMHSLTKH 604 (810)
T ss_dssp HHHTBCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHH-HCC----CCSSCCEEEGGGTTHHHHHHHHHTS
T ss_pred HHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH-HCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf 99735999999999999998762089999999999999999999864-25445677775321677899999999998616
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCEEEEECCCCCCC-------CCCCCCCCCCCCCCCCHHHCCCCC
Q ss_conf 4888999999902999999999189988778625031899314878887-------567763344531023110025883
Q 001720 835 TPIRGGYADVTLDERCAAGYTMMALPVKKLLKLLYPCLIRVDEHLLKPS-------AQLDEYKNIMKRLPLVAESLDSRG 907 (1021)
Q Consensus 835 ~~Lr~g~~~~~~D~R~~~~~~l~s~~~~~~~~~lYPrL~~lh~l~~~~~-------~~~~~~~~lP~~l~LS~e~l~~~g 907 (1021)
.+|+ + .+.+.|||+|++++++++++..++.|+||+||++|++..+.. ..+++.+.+|++++||.++|+++|
T Consensus 605 ~~l~-~-~~~p~Der~~~~~~l~~~~~~~~~~~iyP~L~~~~~~~~~~g~~~~~~~~~~~~~~~~P~~l~Ls~~~l~~~g 682 (810)
T 1pcx_A 605 MAFR-S-GIVPSDHRASALNNLESLPLKYLIKNIYPDVYSLHDMADEAGLPVQTEDGEATGTIVLPQPINATSSLFERYG 682 (810)
T ss_dssp TTTC-S-SCCCHHHHHHHHHHHHHSCHHHHHHHHSCEEEECTTCCSSTTSBC--------CCBCCCCBCCSSTTSCCTTC
T ss_pred HHCC-C-CCCCCCHHHHHHHHHHCCCHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCC
T ss_conf 4107-9-9989139999999998599999987416778980367501266533445555565356874268799827698
Q ss_pred EEEEECCCEEEEEECCCCCHHHHHHHCCCCHHHHH--HCCCCCCC-CHHHHHHHHHHHHHHHHHCC--CCCCEEEEECCC
Q ss_conf 79997694679983489999999751299335431--00013455-52879999999999997099--977418994069
Q 001720 908 LYIFDDGFRFVLWFGRMLSPDIAMNLLGSEFAAEL--SKVMLREQ-DNEMSRKLLGILKKLREQDP--SYYQLCQLVRQG 982 (1021)
Q Consensus 908 iYLLD~G~~i~lwvG~~v~~~ll~~lFGv~s~~~l--~~~~Lp~~-~n~~s~~l~~iI~~lr~~r~--~~~~l~~vvrqg 982 (1021)
+||||+|+.+++|+|+++++++++++||++++.++ ++..||++ +|++++++|++|++||++|. .++++ +||||+
T Consensus 683 ~yLld~G~~i~lwvg~~~~~~l~~~lFg~~~~~~~~~~~~~lp~~~~~~~~~~l~~iI~~lr~~r~~~~~~~l-~ivr~~ 761 (810)
T 1pcx_A 683 LYLIDNGNELFLWMGGDAVPALVFDVFGTQDIFDIPIGKQEIPVVENSEFNQRVRNIINQLRNHDDVITYQSL-YIVRGA 761 (810)
T ss_dssp EEEEECSSEEEEEECTTCCHHHHHHHHSCSCGGGSCCEECCCCCCSSCHHHHHHHHHHHHHHCCSSCCCCCEE-EEEECC
T ss_pred EEEEECCCEEEEEECCCCCHHHHHHHHCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEE-EEEECC
T ss_conf 8999889899999689999799998708984554474335577678985899999999999975788777439-999468
Q ss_pred CCC------------CHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 983------------2599998600456999999899999999999811
Q 001720 983 EQP------------REGFLLLANLVEDQIGGSNGYADWIMQIHRQVLQ 1019 (1021)
Q Consensus 983 ~~~------------~~e~~f~~~LVED~~~~~~SY~dFL~~lh~~I~~ 1019 (1021)
++. ..|.||.++||||++++++||+||||+|||+|++
T Consensus 762 ~~~~~~~~~~~~~~~~~~~~f~~~LvED~~~~~~SY~~fL~~lh~~i~~ 810 (810)
T 1pcx_A 762 SLSEPVNHASAREVATLRLWASSTLVEDKILNNESYREFLQIMKARISK 810 (810)
T ss_dssp CTTCCCCHHHHHHHHHHHHHHHTTCTTSCBTTBCCHHHHHHHHHHHTCC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHCEECCCCCCCCHHHHHHHHHHHHHC
T ss_conf 8887433211000255899999748661889989999999999999629
No 6
>1m2o_A SEC23, protein transport protein SEC23, SEC23P; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1m2v_A 2qtv_A*
Probab=1.00 E-value=1 Score=1140.99 Aligned_cols=657 Identities=18% Similarity=0.279 Sum_probs=582.0
Q ss_pred CCCCCCCEECCCCCCCCCHHHHHHCCCCEEEEECCCCCCCCC-----CC---CC--CCEEECCCEEEECCCCEEEECCCC
Q ss_conf 258999210003645899877751377648898138889999-----88---76--553781660696089569975899
Q 001720 310 LNCHSRYLRLTTSAIPNSQSLVSRWHLPLGAVVCPLAEPPEG-----NL---FI--CRTYVNPYVTFTDAGRKWRCNICA 379 (1021)
Q Consensus 310 ~N~~P~yiR~T~~~iP~t~~ll~~~~lPlgivv~Pfa~~~~~-----e~---~r--CrAYiNPf~~f~~~G~~W~CnlC~ 379 (1021)
.||+|+|||+|||+||.|++++++++||||++|+||++..+. +. +| |||||||||+|+++|++|+||||+
T Consensus 5 ~~~~~~~vR~T~n~~P~t~~~~~~~~lPlg~vi~P~~~~~~~p~v~~~pvRC~~~~CrayiNPf~~~~~~~~~W~C~~C~ 84 (768)
T 1m2o_A 5 TNEDINGVRFTWNVFPSTRSDANSNVVPVGCLYTPLKEYDELNVAPYNPVVCSGPHCKSILNPYCVIDPRNSSWSCPICN 84 (768)
T ss_dssp HHHHHHSEEESBSEEESSHHHHHHTCSCSEEEECTTCCCTTCCEECSCCCBCCSTTTCCBCCTTSCEETTTTEECCTTTC
T ss_pred CCCCCCCEEEEECCCCCCHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCEEEECCCCEEECCCCC
T ss_conf 00686716714136889978972677776899974887888985789997548999871878834880899989843689
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCEEEEEEECCHHHHHHCHHHHHHHHHHHHHHC
Q ss_conf 97899843213458676657978888655543798626665589999976999996526688623799999999999740
Q 001720 380 LLNDVPGDYFAHLDATGRRIDIDQRPELTKGSVEFVAPTEYMVRPPMPPLYFFLIDVSISAIRSGMLEVVAQTIKSCLDE 459 (1021)
Q Consensus 380 ~~N~vp~~Y~~~l~~~g~r~D~~~rPEL~~gsvEfvap~eY~~rpp~pp~yvFvIDvS~~av~sG~l~~~~~sI~~~L~~ 459 (1021)
..|++|.+|+ ++++. +.||||++++|||++|+ ++++||+|+||||+|+++++ ++.+|++|+.+|+.
T Consensus 85 ~~N~~P~~y~-~~~~~------~~~pEL~~~tvEy~~p~----~~~~pp~~vFvIDvs~~~~~---l~~l~~sl~~~L~~ 150 (768)
T 1m2o_A 85 SRNHLPPQYT-NLSQE------NMPLELQSTTIEYITNK----PVTVPPIFFFVVDLTSETEN---LDSLKESIITSLSL 150 (768)
T ss_dssp CCCBCCGGGC-C---C------CCCGGGTCSEEEEECSC----CCCSCCEEEEEEECCSCHHH---HHHHHHHHHHHHHT
T ss_pred CCCCCCHHHC-CCCCC------CCCHHHCCCCEEEECCC----CCCCCCEEEEEEECCCCHHH---HHHHHHHHHHHHHH
T ss_conf 8799986772-57845------57912226978998788----99999889999989868899---99999999999984
Q ss_pred CCCCCCCEEEEEEECCEEEEEECCCCC---------------CCCCEEE--CCC-----C-----CCCCCCC---CCCCC
Q ss_conf 999998439999976759998269999---------------9761431--145-----3-----2235788---99652
Q 001720 460 LPGFPRTQIGFITFDSTIHFYNMKSSL---------------TQPQMMV--ISD-----L-----DDIFVPL---PDDLL 509 (1021)
Q Consensus 460 Lp~~~rt~VgiITFds~Vhfynl~~~~---------------~~pqmlV--vsD-----l-----dd~f~P~---p~~ll 509 (1021)
||++ ++|||||||++||||+++... +++++++ ++| + +|+|+|+ +++||
T Consensus 151 Lp~~--~~VGlITf~~~V~~y~l~~~~~~~~~V~~g~k~~~~~q~~~~l~~l~~~~~~~~~~~~~~~~f~p~~~~~~~~l 228 (768)
T 1m2o_A 151 LPPN--ALIGLITYGNVVQLHDLSSETIDRCNVFRGDREYQLEALTEMLTGQKPTGPGGAASHLPNAMNKVTPFSLNRFF 228 (768)
T ss_dssp SCTT--CEEEEEEESSEEEECCCSSSSSEEEEEEETTSCCCHHHHHHHHHSCCCC---------------CCSSSGGGGS
T ss_pred CCCC--CEEEEEEECCEEEEEECCCCCCCCEEEECCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEE
T ss_conf 8998--77999997987999978888775125634875466889999975015555677665444445666667720121
Q ss_pred EEHHHHHHHHHHHHHHCCC---CCCCCCCCCCCHHHHHHHHHHHHH----HCCCEEEEEECCCCCCCCCCCCCCCCC--C
Q ss_conf 3026669999999952897---435888766546999999999998----129889999427999885332136886--7
Q 001720 510 VNLSESRSVVDTLLDSLPS---MFQDNMNVESAFGPALKAAFMVMS----RLGGKLLIFQNSLPSLGVGCLKLRGDD--L 580 (1021)
Q Consensus 510 v~l~esr~~I~~lLe~Lp~---~f~~~~~~~~alG~AL~aA~~lL~----~~GGkIivF~s~~Pt~GpG~L~~r~~~--~ 580 (1021)
++++|+++.|+++||+|+. ++.+++++++|+|+||++|..+|+ .+||||++|++|+||+|+|+|+.|++. .
T Consensus 229 v~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~~~~G~Al~~A~~ll~~~~~~~GGrI~~F~sg~pt~GpG~l~~r~~~~~~ 308 (768)
T 1m2o_A 229 LPLEQVEFKLNQLLENLSPDQWSVPAGHRPLRATGSALNIASLLLQGCYKNIPARIILFASGPGTVAPGLIVNSELKDPL 308 (768)
T ss_dssp EEHHHHHHHHHHHHHTCCCSCSCCCTTBCCCCCHHHHHHHHHHHHHHHCTTSCCEEEEEESSCCCSSSSCCSCSBTTSCC
T ss_pred EEHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCC
T ss_conf 20899999999999865325566678887762079999999999740147787289999678997788646465443334
Q ss_pred CCC-CCCCC-CCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 545-89756-6678888078999999985179189999723897681214421134540899919998752577999999
Q 001720 581 RVY-GTDKE-HSLRIPEDPFYKQMAADLTKFQIAVNVYAFSDKYTDIASLGTLAKYTGGQVYYYPSFQSTTHGERLRHEL 658 (1021)
Q Consensus 581 r~~-gt~ke-~~l~~p~~~fYk~LA~~~~~~gIsVDlFl~s~~~~Diatl~~L~~~TGG~i~~Y~~F~~~~d~~kl~~dL 658 (1021)
|.+ +++|| +++++++++||++||++|+++||+||+|+++.+|+|+++|+.|++.|||.+++|++|+.+ +|..+|
T Consensus 309 rs~~d~~k~~~~~~~~a~~fY~~la~~~~~~gi~VDlF~~~~~~~dla~l~~l~~~TGG~v~~y~~f~~~----~~~~~l 384 (768)
T 1m2o_A 309 RSHHDIDSDHAQHYKKACKFYNQIAQRVAANGHTVDIFAGCYDQIGMSEMKQLTDSTGGVLLLTDAFSTA----IFKQSY 384 (768)
T ss_dssp CCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHTCEEEEEEECSSCCSHHHHHHHHHHHTCCEEEESCTTSH----HHHHHH
T ss_pred CCCCCCCCCHHHHCCCHHHHHHHHHHHHHHCCEEEEEEECCCCCCCHHHHHHHHHCCCCEEEECCCCCHH----HHHHHH
T ss_conf 4434654320121371589999999999977968999981587668587766765479559973898668----899999
Q ss_pred HHHCCC------CCCCCEEEEEEECCCEEEEEEECCCC----------------CCCCCCEEECCCCCCCCEEEEEEECC
Q ss_conf 983024------44342489999489918975206854----------------58989335136799980899997304
Q 001720 659 SRDLTR------ETAWEAVMRIRCGKGVRFTNYHGNFM----------------LRSTDLLALPAVDCDKAYAMQLSLEE 716 (1021)
Q Consensus 659 ~r~ltr------~~g~~a~lRVR~S~Gl~V~~~~Gnf~----------------~rs~~~~~l~~id~d~Siav~l~~d~ 716 (1021)
+|.+++ ++||+|+||||||+||+|+++||||+ ++++++|+++++++|+||+|+|++++
T Consensus 385 ~r~l~~~~~~~~~~gf~a~mrVr~S~gl~v~~~~G~~~~~~~~~~~~vsd~~ig~~~t~~~~l~~~~~d~t~~v~f~~~~ 464 (768)
T 1m2o_A 385 LRLFAKDEEGYLKMAFNGNMAVKTSKDLKVQGLIGHASAVKKTDANNISESEIGIGATSTWKMASLSPYHSYAIFFEIAN 464 (768)
T ss_dssp HHTTCBCTTSSBSCEEEEEEEEEECTTEEEEEEESSCEECCSCCCSCBCSSCSSBCSCSEEEEEEECTTCCEEEEEEECC
T ss_pred HHHHHHCCCCCCCEEEEEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCEECCCCCCEEEEECCCCCCEEEEEEEECC
T ss_conf 99984301455545778999999669906987653741466555666575442468875278615798877999999636
Q ss_pred CCC-------------CCCEEEEEEEEEEEECCCCEEEEEEEECCCCCCC-HHHHHHHCCHHHHHHHHHHHHHHHHHCCC
Q ss_conf 547-------------8850589999998834982999999110126689-88999832985899999999999981399
Q 001720 717 TLL-------------TTQTVYFQVALLYTASCGERRIRVHTLAAPVVSN-LSDMYQQADTGAIVSVFSRLAIEKTLSHK 782 (1021)
Q Consensus 717 ~l~-------------~~~~~~iQ~AlLYT~~~GeRRIRV~Tl~lpvt~~-l~~vf~s~D~~ai~~~laK~av~~~l~~~ 782 (1021)
++. +...+|||+|++||+.+|+|||||||++++|+++ +.++|+++|+||++++|+|+|++++++++
T Consensus 465 ~~~~~~~~~~~~l~~~~~~~~~iQ~a~lYt~~~G~rriRV~T~~~~~t~~~~~~v~~~~Dqea~~~llar~av~~~~~~~ 544 (768)
T 1m2o_A 465 TAANSNPMMSAPGSADRPHLAYTQFITTYQHSSGTNRIRVTTVANQLLPFGTPAIAASFDQEAAAVLMARIAVHKAETDD 544 (768)
T ss_dssp C-----------------CEEEEEEEEEEEETTTEEEEEEEEEEEEEECTTCHHHHHTBCHHHHHHHHHHHHHHHTTSSC
T ss_pred CCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCEEEEEEEECCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHCCC
T ss_conf 55643333334556567870799999987869998899999523445575589999744999999999999999873198
Q ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCC
Q ss_conf 999999999999999---99998654311589973014511350899999962004888999999902999999999189
Q 001720 783 LEDARNAVQLRLVKA---LKEYRNLYAVQHRLGSRMIYPESLKFLPLYCLAICKSTPIRGGYADVTLDERCAAGYTMMAL 859 (1021)
Q Consensus 783 l~d~R~~l~~~lv~i---L~~YRk~~~a~~~~~gqLiLPesLklLPly~~~LlKS~~Lr~g~~~~~~D~R~~~~~~l~s~ 859 (1021)
+.|+|++|+++++++ +++||| .| +++|+|||+||+||+|+++|+||.+|+. .++++|||+|+++.++++
T Consensus 545 ~~d~r~~l~~~li~l~~~~~~Yrk-~~-----~~~l~lp~~lk~lP~~~~~L~ks~~l~~--~~~spDer~~~~~~l~~~ 616 (768)
T 1m2o_A 545 GADVIRWLDRTLIKLCQKYADYNK-DD-----PQSFRLAPNFSLYPQFTYYLRRSQFLSV--FNNSPDETAFYRHIFTRE 616 (768)
T ss_dssp HHHHHHHHHHHHHHHHHHHSBCCT-TC-----GGGCBCCTTTTHHHHHHHHHHHSTTTCC--TTSCHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHC-CC-----CCCCCCCHHHHHHHHHHHHHHCCCCCCC--CCCCHHHHHHHHHHHHCC
T ss_conf 999999999999999999998746-79-----6213267779999999999856624579--998905999999999739
Q ss_pred CHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCEEEEECCCEEEEEECCCCCHHHHHHHCC-CCH
Q ss_conf 9887786250318993148788875677633445310231100258837999769467998348999999975129-933
Q 001720 860 PVKKLLKLLYPCLIRVDEHLLKPSAQLDEYKNIMKRLPLVAESLDSRGLYIFDDGFRFVLWFGRMLSPDIAMNLLG-SEF 938 (1021)
Q Consensus 860 ~~~~~~~~lYPrL~~lh~l~~~~~~~~~~~~~lP~~l~LS~e~l~~~giYLLD~G~~i~lwvG~~v~~~ll~~lFG-v~s 938 (1021)
++..++.|+||+||++|.. + .|++++||.++|+++||||||+|+.++||+|+.+++ |.++.|+ ++.
T Consensus 617 ~~~~~l~~iyP~L~~~~~~---------~---~P~~v~Ls~~~l~~~gi~LLD~g~~i~i~~G~~v~~-~~~~~~~~~~~ 683 (768)
T 1m2o_A 617 DTTNSLIMIQPTLTSFSME---------D---DPQPVLLDSISVKPNTILLLDTFFFILIYHGEQIAQ-WRKAGYQDDPQ 683 (768)
T ss_dssp CHHHHHHHHSCEEEEECSS---------S---CCEECCSBGGGCCTTCEEEEECSSEEEEEECHHHHH-HHHHTGGGSTT
T ss_pred CHHHHHHHHCCEEEEECCC---------C---CCCCEECCHHHCCCCCEEEEECCCEEEEEECCCCHH-HHHCCCCCCCH
T ss_conf 9999988657848985488---------9---776364869985789889998898999998875217-87465678833
Q ss_pred HHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHCCCCCCC-------------CCCC
Q ss_conf 543100013455528799999999999970999774189940699832599998600456999-------------9998
Q 001720 939 AAELSKVMLREQDNEMSRKLLGILKKLREQDPSYYQLCQLVRQGEQPREGFLLLANLVEDQIG-------------GSNG 1005 (1021)
Q Consensus 939 ~~~l~~~~Lp~~~n~~s~~l~~iI~~lr~~r~~~~~l~~vvrqg~~~~~e~~f~~~LVED~~~-------------~~~S 1005 (1021)
++++. ++-...+..+++|.+.|...+++ ++++||+++ +.+|.++|+||.+. +++|
T Consensus 684 ~~~~~---------~ll~~p~~~a~~i~~~R~p~Pr~-i~~~~~~sq--arfl~s~L~p~~~~~~~~~~~~~~i~tdd~S 751 (768)
T 1m2o_A 684 YADFK---------ALLEEPKLEAAELLVDRFPLPRF-IDTEAGGSQ--ARFLLSKLNPSDNYQDMARGGSTIVLTDDVS 751 (768)
T ss_dssp CHHHH---------HHHHHHHHHHHHHHHTCSSCCEE-EEEETTCGG--GHHHHTTSBCC-----------CCCCCCSCC
T ss_pred HHHHH---------HHHHHHHHHHHHHHHCCCCCCEE-EEECCCCCH--HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 66689---------88665699999999638898659-998899868--8999987487765555556776310037767
Q ss_pred HHHHHHHHHHHHHC
Q ss_conf 99999999999811
Q 001720 1006 YADWIMQIHRQVLQ 1019 (1021)
Q Consensus 1006 Y~dFL~~lh~~I~~ 1019 (1021)
|.+||+||||+|++
T Consensus 752 ~~~f~~~L~k~~v~ 765 (768)
T 1m2o_A 752 LQNFMTHLQQVAVS 765 (768)
T ss_dssp HHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHC
T ss_conf 99999999999753
No 7
>2nut_A Protein transport protein SEC23A; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_A 3egd_A 3eg9_A 3egx_A 3efo_A
Probab=1.00 E-value=1 Score=1119.05 Aligned_cols=656 Identities=17% Similarity=0.265 Sum_probs=581.5
Q ss_pred CCCCCCEECCCCCCCCCHHHHHHCCCCEEEEECCCCCCCCCC-----C---CC--CCEEECCCEEEECCCCEEEECCCCC
Q ss_conf 589992100036458998777513776488981388899998-----8---76--5537816606960895699758999
Q 001720 311 NCHSRYLRLTTSAIPNSQSLVSRWHLPLGAVVCPLAEPPEGN-----L---FI--CRTYVNPYVTFTDAGRKWRCNICAL 380 (1021)
Q Consensus 311 N~~P~yiR~T~~~iP~t~~ll~~~~lPlgivv~Pfa~~~~~e-----~---~r--CrAYiNPf~~f~~~G~~W~CnlC~~ 380 (1021)
||+|+|||+|||+||.|++++++++||||++|+||++..+.. . +| |||||||||+|+++|++|+||||+.
T Consensus 15 n~~~~~vR~T~n~~P~t~~~~~~~~lPlg~vi~P~~~~~~~p~v~~~pvRC~~~~CrayiNPf~~~~~~~~~W~C~~C~~ 94 (769)
T 2nut_A 15 NEERDGVRFSWNVWPSSRLEATRMVVPVAALFTPLKERPDLPPIQYEPVLCSRTTCRAVLNPLCQVDYRAKLWACNFCYQ 94 (769)
T ss_dssp HHHHHSEEESBSSBCSSHHHHTTCSSCCEEEECTTCCCSCCCCBCSCCCBCSSTTCCCBCCTTSEEETTTTEEECSSSCC
T ss_pred CCCCCCCCCEECCCCCCHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCEEEECCCCEEECCCCCC
T ss_conf 68988420530467898688732567769999618888889858889976799998739788459937999799138998
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCEEEECCCCCCCCCCCCCEEEEEEECCHHHHHHCHHHHHHHHHHHHHH
Q ss_conf 789984321345867665797888865--554379862666558999997699999652668862379999999999974
Q 001720 381 LNDVPGDYFAHLDATGRRIDIDQRPEL--TKGSVEFVAPTEYMVRPPMPPLYFFLIDVSISAIRSGMLEVVAQTIKSCLD 458 (1021)
Q Consensus 381 ~N~vp~~Y~~~l~~~g~r~D~~~rPEL--~~gsvEfvap~eY~~rpp~pp~yvFvIDvS~~av~sG~l~~~~~sI~~~L~ 458 (1021)
.|++|.+|+ +++.. ++|||| ++++|||++|++| +++|+|+||||||.++++ ++.++++|+.+|+
T Consensus 95 ~N~~P~~Y~-~~~~~------~~~pEL~p~~~tvEy~~~~~~----p~pp~~vFvIDvS~~a~~---l~~l~~si~~~L~ 160 (769)
T 2nut_A 95 RNQFPPSYA-GISEL------NQPAELLPQFSSIEYVVLRGP----QMPLIFLYVVDTCMEDED---LQALKESMQMSLS 160 (769)
T ss_dssp EEECCGGGT-TCBTT------BCCGGGSGGGSSEEEEECSSC----CCCCEEEEEEECCSCHHH---HHHHHHHHHHHHT
T ss_pred CCCCCHHHC-CCCCC------CCCHHHCCCCCCEEEECCCCC----CCCCEEEEEEECCCCHHH---HHHHHHHHHHHHH
T ss_conf 789986772-57745------689656378986798736888----999789999988755889---9999999999998
Q ss_pred CCCCCCCCEEEEEEECCEEEEEECCCCC---------------CCCC-EEECCC----C-----CCCC-CCCCCCCCEEH
Q ss_conf 0999998439999976759998269999---------------9761-431145----3-----2235-78899652302
Q 001720 459 ELPGFPRTQIGFITFDSTIHFYNMKSSL---------------TQPQ-MMVISD----L-----DDIF-VPLPDDLLVNL 512 (1021)
Q Consensus 459 ~Lp~~~rt~VgiITFds~Vhfynl~~~~---------------~~pq-mlVvsD----l-----dd~f-~P~p~~llv~l 512 (1021)
.||++ ++|||||||++||||+++.+. ++++ |++++| + +|+| +|. ++||+++
T Consensus 161 ~Lp~~--~~VGlITf~~~v~~y~l~~~~~~~~~vf~G~k~~~~~q~~~ml~v~d~~~~~~~~~~~~~f~~p~-~~~lv~~ 237 (769)
T 2nut_A 161 LLPPT--ALVGLITFGRMVQVHELGCEGISKSYVFRGTKDLSAKQLQEMLGLSKVPVTQATRGPQVQQPPPS-NRFLQPV 237 (769)
T ss_dssp TSCTT--CEEEEEEESSEEEEEESSCCSSCEEEEEETTSCCCSHHHHHHHC-------------------CC-CSSSEEH
T ss_pred HCCCC--CEEEEEEECCEEEEEECCCCCCCCCEEECCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC-CCEEEEH
T ss_conf 48998--46999996877999967888776302405876565778999858787665544555565677761-0102218
Q ss_pred HHHHHHHHHHHHHCCC---CCCCCCCCCCCHHHHHHHHHHHHH----HCCCEEEEEECCCCCCCCCCCCCCCCC--CCC-
Q ss_conf 6669999999952897---435888766546999999999998----129889999427999885332136886--754-
Q 001720 513 SESRSVVDTLLDSLPS---MFQDNMNVESAFGPALKAAFMVMS----RLGGKLLIFQNSLPSLGVGCLKLRGDD--LRV- 582 (1021)
Q Consensus 513 ~esr~~I~~lLe~Lp~---~f~~~~~~~~alG~AL~aA~~lL~----~~GGkIivF~s~~Pt~GpG~L~~r~~~--~r~- 582 (1021)
+|+++.|+++||+|+. ++.++++.++|+|+||++|..+|+ .+||||++|++|+||.|+|+|+.|++. .|.
T Consensus 238 ~e~~~~i~~lLe~L~~~~~~~~~~~~~~~a~G~Al~~A~~lL~~~~~~~GGrI~~F~sg~pt~GpG~l~~r~~~~~~rs~ 317 (769)
T 2nut_A 238 QKIDMNLTDLLGELQRDPWPVPQGKRPLRSSGVALSIAVGLLECTFPNTGARIMMFIGGPATQGPGMVVGDELKTPIRSW 317 (769)
T ss_dssp HHHHHHHHHHHHHCCCCSSCCCTTBCCCCCHHHHHHHHHHHHHHHSCSSCCEEEEEESSCCCSSSSCCSCSBTTSCCCCH
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 99999999999865324456567888763068999999999741136788589999678997788777574432223443
Q ss_pred CCCCCC-CCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 589756-6678888078999999985179189999723897681214421134540899919998752577999999983
Q 001720 583 YGTDKE-HSLRIPEDPFYKQMAADLTKFQIAVNVYAFSDKYTDIASLGTLAKYTGGQVYYYPSFQSTTHGERLRHELSRD 661 (1021)
Q Consensus 583 ~gt~ke-~~l~~p~~~fYk~LA~~~~~~gIsVDlFl~s~~~~Diatl~~L~~~TGG~i~~Y~~F~~~~d~~kl~~dL~r~ 661 (1021)
++++|| +++++++++||++||++|+++||+||+|+++.+|+|+++|+.|++.|||.+++|++|+.++ |..+|+|.
T Consensus 318 ~d~~ke~~~~~~~a~~fY~~la~~~~~~gi~VDlF~~~~~~vdla~l~~l~~~TGG~~~~~~~F~~~~----~~~~l~~~ 393 (769)
T 2nut_A 318 HDIDKDNAKYVKKGTKHFEALANRAATTGHVIDIYACALDQTGLLEMKCCPNLTGGYMVMGDSFNTSL----FKQTFQRV 393 (769)
T ss_dssp HHHHTTCCTTHHHHHHHHHHHHHHHHHHTCEEEEEEECSSCCCHHHHTHHHHHSSCCEEEESCSSSHH----HHHHHHHT
T ss_pred CCCCCCHHHHCCCHHHHHHHHHHHHHHCCEEEEEEECCCCCCCHHHHHHHHHCCCCEEEECCCCCHHH----HHHHHHHH
T ss_conf 56642123432505899999999999779699999626776680888777663795599838984466----89999999
Q ss_pred CCC------CCCCCEEEEEEECCCEEEEEEECCCC---------------CCCCCCEEECCCCCCCCEEEEEEECCC---
Q ss_conf 024------44342489999489918975206854---------------589893351367999808999973045---
Q 001720 662 LTR------ETAWEAVMRIRCGKGVRFTNYHGNFM---------------LRSTDLLALPAVDCDKAYAMQLSLEET--- 717 (1021)
Q Consensus 662 ltr------~~g~~a~lRVR~S~Gl~V~~~~Gnf~---------------~rs~~~~~l~~id~d~Siav~l~~d~~--- 717 (1021)
+++ ++||+|+||||||+||+|+++||||+ ++++++|+++++++|+||+|+|+++++
T Consensus 394 ~~~~~~~~l~~gf~a~mrVr~S~gl~v~~~~G~~~~~~~~~~~vsd~~~g~~~t~~~~l~~~~~d~s~~v~f~~~~~~~~ 473 (769)
T 2nut_A 394 FTKDMHGQFKMGFGGTLEIKTSREIKISGAIGPCVSLNSKGPCVSENEIGTGGTCQWKICGLSPTTTLAIYFEVVNQHNA 473 (769)
T ss_dssp TCBCTTSCBSCEEEEEEEEEECTTEEEEEEESSCEECCCCCTTBCSSCCSBCSCSEEEEEEECTTCCEEEEEEEC-----
T ss_pred HHHHCCCCCCEEEEEEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCEECCCCCCEEEEECCCCCCEEEEEEEECCCCCC
T ss_conf 86530456435777999999669827986443630356556765641213678750784067988779999996475566
Q ss_pred -CCCCCEEEEEEEEEEEECCCCEEEEEEEECCCCCCCH---HHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf -4788505899999988349829999991101266898---899983298589999999999998139999999999999
Q 001720 718 -LLTTQTVYFQVALLYTASCGERRIRVHTLAAPVVSNL---SDMYQQADTGAIVSVFSRLAIEKTLSHKLEDARNAVQLR 793 (1021)
Q Consensus 718 -l~~~~~~~iQ~AlLYT~~~GeRRIRV~Tl~lpvt~~l---~~vf~s~D~~ai~~~laK~av~~~l~~~l~d~R~~l~~~ 793 (1021)
+.+...+|||+|++||+.+|+|||||||++++|++++ .++|+++|+||++++|+|+|+++++++++.|+|++|+++
T Consensus 474 ~l~~~~~~~~Q~a~lYt~~~G~rRiRV~T~~~~~t~~~~~~~~v~~~~Dqea~~~llar~a~~~~~~~~~~d~~~~ld~~ 553 (769)
T 2nut_A 474 PIPQGGRGAIQFVTQYQHSSGQRRIRVTTIARNWADAQTQIQNIAASFDQEAAAILMARLAIYRAETEEGPDVLRWLDRQ 553 (769)
T ss_dssp -----CCEEEEEEEEEEETTSCEEEEEEEEEECBCCGGGHHHHHHHTBCHHHHHHHHHHHHHHHHTTC---CHHHHHHHH
T ss_pred CCCCCCEEEEEEEEEEECCCCCEEEEEEEECCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 66788728999999999799988999994321135775437999975499999999999999875128789999999999
Q ss_pred HHHH---HHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCC
Q ss_conf 9999---9999865431158997301451135089999996200488899999990299999999918998877862503
Q 001720 794 LVKA---LKEYRNLYAVQHRLGSRMIYPESLKFLPLYCLAICKSTPIRGGYADVTLDERCAAGYTMMALPVKKLLKLLYP 870 (1021)
Q Consensus 794 lv~i---L~~YRk~~~a~~~~~gqLiLPesLklLPly~~~LlKS~~Lr~g~~~~~~D~R~~~~~~l~s~~~~~~~~~lYP 870 (1021)
++++ +++||| .| +++|+|||+||+||+|+++|+||.+|+. .++++|||+|++++++++++..++.|+||
T Consensus 554 li~l~~~~~~Yrk-~~-----~~sl~lp~~lkllP~~~~~L~ks~~l~~--~~~spDer~~~~~~l~~~~~~~~~~~iyP 625 (769)
T 2nut_A 554 LIRLCQKFGEYHK-DD-----PSSFRFSETFSLYPQFMFHLRRSSFLQV--FNNSPDESSYYRHHFMRQDLTQSLIMIQP 625 (769)
T ss_dssp HHHHHHHHCBCCT-TC-----GGGCBCCTTTTTHHHHHHHHHHSTTTCC--TTSCHHHHHHHHHHHTTCCHHHHHHHHSC
T ss_pred HHHHHHHHHHHHC-CC-----CCCCCCCHHHHHHHHHHHHHHCCCCCCC--CCCCCCHHHHHHHHHHCCCHHHHHHHHCC
T ss_conf 9999999999857-69-----6333066779999999999856410278--99882299999999975999999875467
Q ss_pred CEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCEEEEECCCEEEEEECCCCCHHHHHHHCCCCHHHHHHCCCCCCC
Q ss_conf 18993148788875677633445310231100258837999769467998348999999975129933543100013455
Q 001720 871 CLIRVDEHLLKPSAQLDEYKNIMKRLPLVAESLDSRGLYIFDDGFRFVLWFGRMLSPDIAMNLLGSEFAAELSKVMLREQ 950 (1021)
Q Consensus 871 rL~~lh~l~~~~~~~~~~~~~lP~~l~LS~e~l~~~giYLLD~G~~i~lwvG~~v~~~ll~~lFGv~s~~~l~~~~Lp~~ 950 (1021)
+||++|.. + .|++++||.++|+++||||||+|+.++||+|+.+++|....+.+.+..+.+
T Consensus 626 ~L~~~~~~--------~----~P~~v~ls~~~l~~~gi~LLD~g~~i~i~~G~~v~~w~~~~~~~~p~~~~~-------- 685 (769)
T 2nut_A 626 ILYAYSFS--------G----PPEPVLLDSSSILADRILLMDTFFQILIYHGETIAQWRKSGYQDMPEYENF-------- 685 (769)
T ss_dssp EEEEECSS--------S----SCEECCSSGGGCCTTCEEEEECSSEEEEEECHHHHHHHHHTTTTSGGGHHH--------
T ss_pred EEEECCCC--------C----CCCCEECCHHHCCCCCEEEEECCCEEEEEECCCCHHHHHCCCCCCCHHHHH--------
T ss_conf 78863688--------9----897541879981679789997898999997775267872799888215669--------
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHCCCCCC----------------CCCCCHHHHHHHHH
Q ss_conf 52879999999999997099977418994069983259999860045699----------------99998999999999
Q 001720 951 DNEMSRKLLGILKKLREQDPSYYQLCQLVRQGEQPREGFLLLANLVEDQI----------------GGSNGYADWIMQIH 1014 (1021)
Q Consensus 951 ~n~~s~~l~~iI~~lr~~r~~~~~l~~vvrqg~~~~~e~~f~~~LVED~~----------------~~~~SY~dFL~~lh 1014 (1021)
.++-...++.+++|+++|..++++ ++++||..+ .+++.++|..-.+ .++.||..|+.||+
T Consensus 686 -~~~l~~p~~~a~~i~~~R~p~Pr~-i~~~~g~sq--aRfl~sklnps~~~~~~~~~~~~~~~~~~tddvsl~~f~~~l~ 761 (769)
T 2nut_A 686 -RHLLQAPVDDAQEILHSRFPMPRY-IDTEHGGSQ--ARFLLSKVNPSQTHNNMYAWGQESGAPILTDDVSLQVFMDHLK 761 (769)
T ss_dssp -HHHHHHHHHHHHHHHHHSSSCCEE-EEEETTCST--THHHHHHCC----------------------CCSHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHCCCCCCEE-EEECCCCCH--HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf -999986999999998548998769-997589868--9999876387534667776777677530336357999999999
Q ss_pred HHHHC
Q ss_conf 99811
Q 001720 1015 RQVLQ 1019 (1021)
Q Consensus 1015 ~~I~~ 1019 (1021)
|.+.+
T Consensus 762 ~~~v~ 766 (769)
T 2nut_A 762 KLAVS 766 (769)
T ss_dssp HHHSS
T ss_pred HHHHC
T ss_conf 98505
No 8
>2yrc_A Protein transport protein SEC23A; zinc binding, copii, coat protein complex-II, endoplasmic reticulum, golgi, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yrd_A
Probab=1.00 E-value=1 Score=92.07 Aligned_cols=37 Identities=30% Similarity=0.669 Sum_probs=35.2
Q ss_pred CC--CCEEECCCEEEECCCCEEEECCCCCCCCCCCCCCC
Q ss_conf 76--55378166069608956997589997899843213
Q 001720 354 FI--CRTYVNPYVTFTDAGRKWRCNICALLNDVPGDYFA 390 (1021)
Q Consensus 354 ~r--CrAYiNPf~~f~~~G~~W~CnlC~~~N~vp~~Y~~ 390 (1021)
+| |||||||||+|+++|++|+||||+..|++|.+|+.
T Consensus 13 ~r~~CraylNP~~~~~~~~~~W~C~~C~~~N~~P~~Y~~ 51 (59)
T 2yrc_A 13 SRTTCRAVLNPLCQVDYRAKLWACNFCYQRNQFPPSYAG 51 (59)
T ss_dssp SCTTTCCBCCTTSEEEGGGTEEECSSSCCEEECCSCCSS
T ss_pred CCCCCCEEECCCEEEECCCCEEECCCCCCCCCCCHHHHC
T ss_conf 798987297996598789999984168985789978805
No 9
>4fx5_A VON willebrand factor type A; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, blood clotting; HET: MSE; 1.73A {Catenulispora acidiphila}
Probab=1.00 E-value=1 Score=90.67 Aligned_cols=305 Identities=13% Similarity=0.073 Sum_probs=190.4
Q ss_pred CCCEEEEEEECCHHHHH-HCHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEECCCCCCCCCEEECCCCCCCCCCC
Q ss_conf 99769999965266886-23799999999999740999998439999976759998269999976143114532235788
Q 001720 426 MPPLYFFLIDVSISAIR-SGMLEVVAQTIKSCLDELPGFPRTQIGFITFDSTIHFYNMKSSLTQPQMMVISDLDDIFVPL 504 (1021)
Q Consensus 426 ~pp~yvFvIDvS~~av~-sG~l~~~~~sI~~~L~~Lp~~~rt~VgiITFds~Vhfynl~~~~~~pqmlVvsDldd~f~P~ 504 (1021)
.+..++||||+|.++-. ..-++.++++++..++.|..+ .+|+||+|++..+..- |+
T Consensus 76 ~~~dvv~VLD~SGSM~~~~~rl~~ak~a~~~ll~~L~~~--drv~lV~Fs~~a~~~~---------------------p~ 132 (464)
T 4fx5_A 76 SENVEVIIIDCSGSMDYPRTKMMAAKEATKVAIDTLTDG--AFFAVVAGTEGARVVY---------------------PT 132 (464)
T ss_dssp CCEEEEEEEECCGGGGTTTHHHHHHHHHHHHHHHHSCTT--CEEEEEEESSSEEEEE---------------------SS
T ss_pred CCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCC--CEEEEEEECCCEEEEE---------------------CC
T ss_conf 970399999867114889846999999999999728999--8899999838607985---------------------69
Q ss_pred CCCCCEEHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC---CEEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 996523026669999999952897435888766546999999999998129---88999942799988533213688675
Q 001720 505 PDDLLVNLSESRSVVDTLLDSLPSMFQDNMNVESAFGPALKAAFMVMSRLG---GKLLIFQNSLPSLGVGCLKLRGDDLR 581 (1021)
Q Consensus 505 p~~llv~l~esr~~I~~lLe~Lp~~f~~~~~~~~alG~AL~aA~~lL~~~G---GkIivF~s~~Pt~GpG~L~~r~~~~r 581 (1021)
..++...-.+.++.+...|+.|.. ..++.++.||+.|...|+... ..|++++.|.++.+.
T Consensus 133 t~~l~~~~~~~~~~l~~~I~~L~~------~GgT~l~~aL~~A~~~l~~~~~~~~~IILLTDG~~~~~~----------- 195 (464)
T 4fx5_A 133 GGQLLRADYQSRAAAKEAVGRLHA------NGGTAMGRWLAQAGRIFDTAPSAIKHAILLTDGKDESET----------- 195 (464)
T ss_dssp SSSCEECSHHHHHHHHHHHHTCCC------CSCCCHHHHHHHHHHHHTTCTTSEEEEEEEESSCCTTSC-----------
T ss_pred CCCCCCCCHHHHHHHHHHHHCCCC------CCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCC-----------
T ss_conf 754564887789999999970899------999968999999999875289877889999589999998-----------
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 45897566678888078999999985179189999723897681214421134540899919998752577999999983
Q 001720 582 VYGTDKEHSLRIPEDPFYKQMAADLTKFQIAVNVYAFSDKYTDIASLGTLAKYTGGQVYYYPSFQSTTHGERLRHELSRD 661 (1021)
Q Consensus 582 ~~gt~ke~~l~~p~~~fYk~LA~~~~~~gIsVDlFl~s~~~~Diatl~~L~~~TGG~i~~Y~~F~~~~d~~kl~~dL~r~ 661 (1021)
..-... +.+..+.+|.|+.|.++. ..|...|..++..|||..++..++.. -.....++...
T Consensus 196 --------------~~~l~~-~~~a~~~~i~i~tiGiG~-~~d~~~L~~IA~~tgG~~~~v~d~~~---L~~~f~~i~~~ 256 (464)
T 4fx5_A 196 --------------PADLAR-AIQSSIGNFTADCRGIGE-DWEPKELRKIADALLGTVGIIRDPAT---LAEDFREMTAK 256 (464)
T ss_dssp --------------HHHHHH-HHHHHTTTCEEEEEEESS-SSCHHHHHHHHHHTTCCEEEESSGGG---HHHHHHHHHHH
T ss_pred --------------HHHHHH-HHHHHCCCCEEEEEEECC-CCCHHHHHHHHHHCCCEEEECCCHHH---HHHHHHHHHHH
T ss_conf --------------499999-999843897599999698-52899999999817987998599899---99999999998
Q ss_pred CCCCCCCCEEEEEEECCCEEEEEEECC------CC-CC------CCCCEEECCCCCCCC--EEEEEEECCCCCCCCEEE-
Q ss_conf 024443424899994899189752068------54-58------989335136799980--899997304547885058-
Q 001720 662 LTRETAWEAVMRIRCGKGVRFTNYHGN------FM-LR------STDLLALPAVDCDKA--YAMQLSLEETLLTTQTVY- 725 (1021)
Q Consensus 662 ltr~~g~~a~lRVR~S~Gl~V~~~~Gn------f~-~r------s~~~~~l~~id~d~S--iav~l~~d~~l~~~~~~~- 725 (1021)
+.....-++.+++++..|+.+..+..- .. .+ ....+.++.+ .+.+ |.++|.+...- .+....
T Consensus 257 ~~s~~~~dv~l~l~~~~g~~v~~v~~v~P~~~~l~~~~~~~~~~~~~~v~lG~l-~~e~r~~lv~l~v~~~~-~g~~~~~ 334 (464)
T 4fx5_A 257 SMGKEVADVALRLWAPKGATIRYVKQVSPNLADLSGMRVPGDNPLTGDYPTGAW-GAESREYHICVEVEPGN-IGQEKLA 334 (464)
T ss_dssp HHTCCEEEEEEEEECCTTCEEEEEEEEESBCEECGGGCEECSSTTEEEEEEEEE-SSEEEEEEEEEECCCCC-TTCEEEE
T ss_pred HHCHHEEEEEEEEEECCCCEEEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCC-CCCEEEEEEEEECCCCC-CCCEEEE
T ss_conf 615104326999994899179999863664344676555678883789989767-78728999999847889-8850588
Q ss_pred EEEEEEEEECCCCEEEEEEEECCCCCCCH-------HHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 99999988349829999991101266898-------89998329858999999999999813999999999999
Q 001720 726 FQVALLYTASCGERRIRVHTLAAPVVSNL-------SDMYQQADTGAIVSVFSRLAIEKTLSHKLEDARNAVQL 792 (1021)
Q Consensus 726 iQ~AlLYT~~~GeRRIRV~Tl~lpvt~~l-------~~vf~s~D~~ai~~~laK~av~~~l~~~l~d~R~~l~~ 792 (1021)
.++.+.|.+..|++.+.=..+.+.++.+. .+|.+...+.. ++-..+++......+....+...|..
T Consensus 335 ~~v~~~y~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~V~~~~~~~~-~a~~~~~a~~~~~~gd~~~A~~~L~~ 407 (464)
T 4fx5_A 335 GRVQLVAKDAGGATLLGEGKIRAVWTEDTDLSTRINGRVAHYTGQAE-MAAAIQEGLDAQAAGDLDTATARLGR 407 (464)
T ss_dssp EEEEEEEEETTEEEEEEEEEEEEEECSCHHHHSCCCHHHHHHHHHHH-HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred EEEEEEECCCCCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHH-HHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 99999971777664025663599997662235789989999999999-99999999999986999999999999
No 10
>2x31_A Magnesium-chelatase 60 kDa subunit; ligase, bacteriochlorophyll biosynthesis, photosynthesis; 7.50A {Rhodobacter capsulatus}
Probab=1.00 E-value=1 Score=73.38 Aligned_cols=178 Identities=15% Similarity=0.210 Sum_probs=102.6
Q ss_pred CCCEEEEEEECCHHHHHHCHHHHHHHHHHHHHHCC-CCCCCCEEEEEEECCEEEEEECCCCCCCCCEEECCCCCCCCCCC
Q ss_conf 99769999965266886237999999999997409-99998439999976759998269999976143114532235788
Q 001720 426 MPPLYFFLIDVSISAIRSGMLEVVAQTIKSCLDEL-PGFPRTQIGFITFDSTIHFYNMKSSLTQPQMMVISDLDDIFVPL 504 (1021)
Q Consensus 426 ~pp~yvFvIDvS~~av~sG~l~~~~~sI~~~L~~L-p~~~rt~VgiITFds~Vhfynl~~~~~~pqmlVvsDldd~f~P~ 504 (1021)
.+..++||||+|.++-. .-++.+++.++..++.+ .. +.+||+|+|++... +..+|.
T Consensus 4 ~~~~vv~vlD~SgSM~~-~~~~~~k~~~~~~~~~~~~~--~~~v~lv~f~~~~~--------------------~~~~~~ 60 (189)
T 2x31_A 4 SDRVLIFAVDASGSAAV-ARLSEAKGAVELLLGRAYAA--RDHVSLITFRGTAA--------------------QVLLQP 60 (189)
T ss_dssp SCCEEEEEEECCTTSCC---CHHHHHHHHHHHHHSCTT--TSCCCEEEESBSCC--------------------CBCTTT
T ss_pred CCEEEEEEEECCCCCCC-HHHHHHHHHHHHHHHHHCCC--CCEEEEEEECCCCC--------------------EEECCC
T ss_conf 87179999978889886-69999999999999973078--85799999879984--------------------076689
Q ss_pred CCCCCEEHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHC-----CCEEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 99652302666999999995289743588876654699999999999812-----9889999427999885332136886
Q 001720 505 PDDLLVNLSESRSVVDTLLDSLPSMFQDNMNVESAFGPALKAAFMVMSRL-----GGKLLIFQNSLPSLGVGCLKLRGDD 579 (1021)
Q Consensus 505 p~~llv~l~esr~~I~~lLe~Lp~~f~~~~~~~~alG~AL~aA~~lL~~~-----GGkIivF~s~~Pt~GpG~L~~r~~~ 579 (1021)
...++.+...|+.+.. ..++.++.||+.|...+... ...|++++.|.++.|...-..+++
T Consensus 61 --------~~~~~~~~~~i~~l~~------~g~T~~~~al~~a~~~l~~~~~~~~~~~ivliTDG~~~~~~~~~~~~~~- 125 (189)
T 2x31_A 61 --------SRSLTQTKRQLQGLPG------GGGTPLASGMEMAMVTAKQARSRGMTPTIALLTDGRGNIALDGTANREL- 125 (189)
T ss_dssp --------CSCHHHHHHHHHHCCC------CBCCCCHHHHHHHHHHHHTCTTTCSSEEEEECCBSCCSSCCTHHHHHGG-
T ss_pred --------CCCHHHHHHHHHCCCC------CCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCCC-
T ss_conf --------8999999999966999------9998889999999999973457899239999778998778776555564-
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 75458975666788880789999999851791899997238976812144211345408999199987525779999999
Q 001720 580 LRVYGTDKEHSLRIPEDPFYKQMAADLTKFQIAVNVYAFSDKYTDIASLGTLAKYTGGQVYYYPSFQSTTHGERLRHELS 659 (1021)
Q Consensus 580 ~r~~gt~ke~~l~~p~~~fYk~LA~~~~~~gIsVDlFl~s~~~~Diatl~~L~~~TGG~i~~Y~~F~~~~d~~kl~~dL~ 659 (1021)
...+ + .+++..+.+.+|.|..+.+... +...|..++..|||..++.++ .+.+.|...+.
T Consensus 126 ---~~~~----~--------~~~~~~~~~~gi~v~~ig~g~~--~~~~L~~iA~~~~G~~~~~~~----~~~~~~~~~~~ 184 (189)
T 2x31_A 126 ---AGEQ----A--------TKVARAIRASGMPAVIIDTAMR--PNPALVDLARTMDAHYIALPR----ATAHKMADVLG 184 (189)
T ss_dssp ---GTCC----C--------EEEEECTGGGGSCCTHHHHHHS--SCSSSCSTTTEEEESSTTTHH----HHHHHHHHHHH
T ss_pred ---HHHH----H--------HHHHHHHHHCCCEEEEEECCCC--CHHHHHHHHHHCCCEEEECCC----CCHHHHHHHHH
T ss_conf ---5699----9--------9999999976985999933788--779999999713976997798----66488999998
Q ss_pred HHC
Q ss_conf 830
Q 001720 660 RDL 662 (1021)
Q Consensus 660 r~l 662 (1021)
+.+
T Consensus 185 ~~~ 187 (189)
T 2x31_A 185 AAL 187 (189)
T ss_dssp HCC
T ss_pred HHH
T ss_conf 863
Done!