Query 001721
Match_columns 1020
No_of_seqs 662 out of 2694
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 07:44:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001721.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001721hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5184 ATS1 Alpha-tubulin sup 100.0 2.9E-46 6.3E-51 417.6 30.1 367 182-578 60-465 (476)
2 KOG1427 Uncharacterized conser 100.0 2.9E-40 6.2E-45 346.9 21.0 362 187-578 17-399 (443)
3 COG5184 ATS1 Alpha-tubulin sup 100.0 3.1E-39 6.6E-44 361.3 26.1 316 242-578 58-410 (476)
4 KOG1427 Uncharacterized conser 100.0 3.7E-36 7.9E-41 316.0 16.6 311 182-526 69-399 (443)
5 PF08381 BRX: Transcription fa 100.0 2.3E-31 4.9E-36 218.0 7.0 59 944-1002 1-59 (59)
6 KOG0783 Uncharacterized conser 99.9 9.4E-26 2E-30 261.2 15.7 305 184-527 136-450 (1267)
7 KOG0783 Uncharacterized conser 99.9 1.8E-25 3.8E-30 259.0 14.6 300 247-576 137-447 (1267)
8 KOG1428 Inhibitor of type V ad 99.8 7.2E-20 1.6E-24 217.7 23.7 343 187-574 495-891 (3738)
9 KOG1428 Inhibitor of type V ad 99.8 3.1E-19 6.6E-24 212.5 19.7 250 232-503 568-870 (3738)
10 PF13713 BRX_N: Transcription 99.3 5.4E-13 1.2E-17 101.3 2.4 32 833-864 1-32 (39)
11 PF01363 FYVE: FYVE zinc finge 99.1 9.5E-12 2.1E-16 109.0 1.3 67 579-645 2-68 (69)
12 PF00415 RCC1: Regulator of ch 99.1 7.5E-11 1.6E-15 96.7 3.9 50 526-575 1-51 (51)
13 KOG1818 Membrane trafficking a 99.1 2E-10 4.2E-15 135.6 8.6 70 576-650 158-227 (634)
14 KOG0941 E3 ubiquitin protein l 99.1 1.9E-12 4E-17 154.2 -9.6 188 223-475 4-197 (850)
15 smart00064 FYVE Protein presen 99.0 1.7E-10 3.7E-15 100.7 3.2 66 578-645 2-67 (68)
16 PF00415 RCC1: Regulator of ch 99.0 7.6E-10 1.7E-14 90.7 5.0 50 251-300 1-51 (51)
17 KOG1729 FYVE finger containing 98.8 5.9E-10 1.3E-14 122.4 0.6 68 576-646 158-226 (288)
18 PTZ00303 phosphatidylinositol 98.8 2.3E-09 5E-14 125.3 3.3 70 576-645 449-530 (1374)
19 KOG1819 FYVE finger-containing 98.8 1.8E-09 3.9E-14 121.0 1.9 71 571-643 886-961 (990)
20 KOG0941 E3 ubiquitin protein l 98.8 1.7E-10 3.7E-15 137.8 -7.7 139 382-577 4-142 (850)
21 PF13540 RCC1_2: Regulator of 98.7 2.4E-08 5.2E-13 72.9 4.9 30 510-539 1-30 (30)
22 PF13540 RCC1_2: Regulator of 98.7 3.2E-08 6.8E-13 72.3 4.5 30 342-371 1-30 (30)
23 cd00065 FYVE FYVE domain; Zinc 98.5 4.1E-08 8.9E-13 82.6 2.3 55 586-642 2-56 (57)
24 PF12814 Mcp5_PH: Meiotic cell 98.1 1.1E-06 2.5E-11 85.8 2.4 49 4-52 70-123 (123)
25 KOG1841 Smad anchor for recept 97.9 2.3E-06 5E-11 105.2 0.8 62 576-640 547-608 (1287)
26 KOG1842 FYVE finger-containing 97.9 8E-07 1.7E-11 100.0 -3.2 69 578-646 172-260 (505)
27 KOG1409 Uncharacterized conser 97.7 1.6E-05 3.4E-10 87.6 2.0 82 563-649 254-354 (404)
28 cd01248 PH_PLC Phospholipase C 97.5 3.1E-05 6.7E-10 74.9 1.6 46 4-49 62-115 (115)
29 KOG1843 Uncharacterized conser 97.2 8.1E-05 1.8E-09 83.5 0.3 67 577-644 151-218 (473)
30 KOG4424 Predicted Rho/Rac guan 95.9 0.0035 7.7E-08 73.7 1.7 67 583-652 412-479 (623)
31 KOG1811 Predicted Zn2+-binding 94.1 0.0048 1E-07 72.3 -3.7 65 577-643 313-382 (1141)
32 KOG0230 Phosphatidylinositol-4 91.6 0.13 2.9E-06 66.7 3.6 49 587-648 6-54 (1598)
33 PF02403 Seryl_tRNA_N: Seryl-t 90.2 1.2 2.7E-05 42.3 7.9 74 786-859 14-96 (108)
34 PRK15396 murein lipoprotein; P 90.0 1.4 3.1E-05 39.7 7.5 48 794-848 24-71 (78)
35 PF11725 AvrE: Pathogenicity f 88.5 4.6 9.9E-05 54.0 13.4 112 454-578 701-814 (1774)
36 KOG0943 Predicted ubiquitin-pr 88.4 0.062 1.4E-06 67.1 -2.9 132 232-371 373-509 (3015)
37 PRK09973 putative outer membra 88.2 1.8 3.9E-05 39.5 6.9 42 795-840 24-65 (85)
38 PF04728 LPP: Lipoprotein leuc 88.1 4 8.6E-05 34.4 8.2 47 795-848 3-49 (56)
39 PF02318 FYVE_2: FYVE-type zin 88.0 0.33 7.1E-06 47.3 2.3 50 585-643 53-103 (118)
40 PF03962 Mnd1: Mnd1 family; I 86.5 2.5 5.4E-05 44.7 8.0 65 794-859 61-125 (188)
41 KOG4693 Uncharacterized conser 86.2 26 0.00056 38.7 15.3 63 294-365 80-146 (392)
42 PLN02153 epithiospecifier prot 85.4 74 0.0016 36.4 23.2 16 519-534 307-322 (341)
43 KOG0943 Predicted ubiquitin-pr 84.2 0.13 2.8E-06 64.6 -3.2 128 284-430 373-504 (3015)
44 TIGR02449 conserved hypothetic 82.9 10 0.00022 33.1 8.6 62 796-857 1-62 (65)
45 KOG3669 Uncharacterized conser 82.8 10 0.00022 45.7 11.3 70 286-364 228-299 (705)
46 PF04849 HAP1_N: HAP1 N-termin 82.7 4.8 0.0001 45.4 8.4 53 794-860 233-285 (306)
47 PF07106 TBPIP: Tat binding pr 82.3 4.3 9.4E-05 41.9 7.6 63 787-861 71-133 (169)
48 PF02403 Seryl_tRNA_N: Seryl-t 81.5 12 0.00026 35.5 9.8 77 785-861 26-105 (108)
49 PRK05431 seryl-tRNA synthetase 81.2 5.8 0.00012 47.3 9.0 72 785-856 13-92 (425)
50 COG1579 Zn-ribbon protein, pos 81.0 6.9 0.00015 42.7 8.7 68 794-864 109-176 (239)
51 PF12325 TMF_TATA_bd: TATA ele 80.4 7.8 0.00017 38.0 8.0 55 794-859 29-83 (120)
52 PF03904 DUF334: Domain of unk 80.2 10 0.00022 40.8 9.3 61 794-856 42-109 (230)
53 PF12718 Tropomyosin_1: Tropom 79.9 12 0.00025 37.9 9.4 39 794-832 27-65 (143)
54 PF12718 Tropomyosin_1: Tropom 79.8 10 0.00022 38.3 9.0 37 794-830 34-70 (143)
55 PHA01750 hypothetical protein 79.5 4.8 0.0001 34.6 5.3 33 794-826 41-73 (75)
56 KOG0169 Phosphoinositide-speci 79.3 0.93 2E-05 56.0 1.6 53 4-56 74-128 (746)
57 KOG2264 Exostosin EXT1L [Signa 79.3 16 0.00035 43.8 11.3 71 794-864 81-155 (907)
58 PF06428 Sec2p: GDP/GTP exchan 79.2 10 0.00022 36.0 8.1 65 796-860 2-67 (100)
59 PF11559 ADIP: Afadin- and alp 78.8 17 0.00037 36.7 10.4 58 794-851 65-122 (151)
60 TIGR03752 conj_TIGR03752 integ 78.0 11 0.00024 44.8 9.7 71 788-858 66-144 (472)
61 TIGR00414 serS seryl-tRNA synt 76.5 9.6 0.00021 45.3 8.9 62 795-856 30-95 (418)
62 PLN02678 seryl-tRNA synthetase 76.1 9.8 0.00021 45.6 8.8 73 784-857 16-98 (448)
63 PF11725 AvrE: Pathogenicity f 75.6 8 0.00017 51.9 8.3 71 456-527 744-815 (1774)
64 PF07851 TMPIT: TMPIT-like pro 75.0 8.5 0.00019 44.0 7.5 31 833-863 64-94 (330)
65 PLN02320 seryl-tRNA synthetase 74.8 16 0.00035 44.2 10.2 71 784-856 77-156 (502)
66 KOG0971 Microtubule-associated 73.6 1.3E+02 0.0027 38.7 17.1 13 564-576 30-42 (1243)
67 KOG3669 Uncharacterized conser 73.6 1.1E+02 0.0023 37.4 16.0 107 347-480 190-299 (705)
68 PF15619 Lebercilin: Ciliary p 73.1 20 0.00043 38.1 9.3 67 794-860 117-187 (194)
69 KOG4441 Proteins containing BT 72.9 76 0.0017 39.4 15.7 60 470-534 471-530 (571)
70 PRK11637 AmiB activator; Provi 72.5 22 0.00047 42.4 10.6 33 794-826 60-92 (428)
71 KOG4552 Vitamin-D-receptor int 72.1 22 0.00048 37.5 9.0 53 795-850 67-119 (272)
72 PRK11637 AmiB activator; Provi 71.5 21 0.00046 42.5 10.2 45 788-832 47-91 (428)
73 PF09738 DUF2051: Double stran 71.5 37 0.00081 38.6 11.5 51 803-860 113-163 (302)
74 cd00821 PH Pleckstrin homology 71.4 2.9 6.3E-05 36.7 2.3 38 11-48 57-95 (96)
75 PRK09039 hypothetical protein; 71.2 15 0.00032 42.6 8.5 50 794-843 136-185 (343)
76 PF07569 Hira: TUP1-like enhan 70.7 15 0.00032 39.8 7.9 77 284-365 12-93 (219)
77 KOG1900 Nuclear pore complex, 70.6 82 0.0018 41.9 15.3 217 246-482 93-339 (1311)
78 PRK00846 hypothetical protein; 69.8 47 0.001 30.0 9.4 55 802-863 13-67 (77)
79 KOG4603 TBP-1 interacting prot 69.7 18 0.00039 37.1 7.5 62 787-860 78-139 (201)
80 PHA03098 kelch-like protein; P 69.6 1.5E+02 0.0033 36.1 17.4 17 295-312 335-351 (534)
81 PF04156 IncA: IncA protein; 69.1 35 0.00075 35.8 10.2 67 791-857 84-150 (191)
82 KOG1274 WD40 repeat protein [G 69.1 60 0.0013 41.4 13.3 73 292-370 13-89 (933)
83 PRK10869 recombination and rep 68.7 18 0.00038 44.7 9.0 64 794-857 319-387 (553)
84 PF14197 Cep57_CLD_2: Centroso 68.0 60 0.0013 28.7 9.6 59 795-856 5-66 (69)
85 PF04977 DivIC: Septum formati 67.5 14 0.00031 32.7 5.9 31 794-824 23-53 (80)
86 PHA02713 hypothetical protein; 67.5 91 0.002 38.6 14.8 20 293-312 341-360 (557)
87 PHA03098 kelch-like protein; P 66.3 2.5E+02 0.0055 34.2 18.4 14 299-312 290-303 (534)
88 PF10211 Ax_dynein_light: Axon 66.1 31 0.00068 36.5 9.0 30 797-826 122-151 (189)
89 PF10883 DUF2681: Protein of u 65.4 28 0.00061 32.1 7.3 51 794-850 29-79 (87)
90 PF10186 Atg14: UV radiation r 65.2 38 0.00082 37.8 10.2 33 794-826 76-108 (302)
91 COG2433 Uncharacterized conser 64.8 42 0.0009 41.1 10.5 61 794-854 428-491 (652)
92 PRK02119 hypothetical protein; 64.6 60 0.0013 29.0 9.1 58 795-859 2-59 (73)
93 KOG0646 WD40 repeat protein [G 64.1 2.2E+02 0.0047 34.0 15.7 66 287-365 84-151 (476)
94 COG4238 Murein lipoprotein [Ce 64.0 33 0.00071 30.6 7.0 41 794-838 24-64 (78)
95 PF07888 CALCOCO1: Calcium bin 63.8 42 0.00091 41.0 10.4 34 794-827 163-196 (546)
96 TIGR00414 serS seryl-tRNA synt 63.7 43 0.00092 39.9 10.6 76 787-862 29-108 (418)
97 PF05278 PEARLI-4: Arabidopsis 62.7 39 0.00084 37.6 9.1 53 810-862 187-239 (269)
98 KOG0977 Nuclear envelope prote 62.6 31 0.00068 42.0 9.1 63 794-856 112-174 (546)
99 KOG2391 Vacuolar sorting prote 62.1 1.2E+02 0.0025 34.9 12.7 64 784-851 213-277 (365)
100 TIGR02977 phageshock_pspA phag 61.8 40 0.00088 36.4 9.1 45 794-838 44-88 (219)
101 PF05667 DUF812: Protein of un 60.8 52 0.0011 40.9 10.8 42 792-833 325-366 (594)
102 cd01244 PH_RasGAP_CG9209 RAS_G 60.8 5.2 0.00011 37.7 1.8 31 18-48 67-97 (98)
103 PF03961 DUF342: Protein of un 60.6 35 0.00077 41.0 9.3 68 794-861 333-406 (451)
104 PRK05431 seryl-tRNA synthetase 59.9 56 0.0012 39.1 10.6 77 787-863 27-106 (425)
105 PF10267 Tmemb_cc2: Predicted 59.3 1.3E+02 0.0027 35.7 13.0 60 789-851 213-272 (395)
106 PRK14153 heat shock protein Gr 58.6 55 0.0012 34.9 9.1 65 786-851 25-95 (194)
107 PF03962 Mnd1: Mnd1 family; I 58.6 45 0.00098 35.3 8.6 68 794-862 68-135 (188)
108 PF13870 DUF4201: Domain of un 58.6 62 0.0013 33.7 9.6 38 794-831 41-78 (177)
109 PF04111 APG6: Autophagy prote 58.2 65 0.0014 36.9 10.4 41 787-827 49-89 (314)
110 KOG4657 Uncharacterized conser 58.2 27 0.00059 37.5 6.6 47 794-840 92-141 (246)
111 COG0497 RecN ATPase involved i 58.1 43 0.00093 41.1 9.3 48 806-857 339-388 (557)
112 KOG3551 Syntrophins (type beta 58.1 3.4 7.4E-05 47.2 0.1 27 25-51 246-272 (506)
113 PF04156 IncA: IncA protein; 57.8 57 0.0012 34.2 9.3 30 796-825 82-111 (191)
114 COG1842 PspA Phage shock prote 57.6 53 0.0012 35.8 9.1 56 794-851 44-99 (225)
115 TIGR03185 DNA_S_dndD DNA sulfu 57.1 46 0.001 42.0 9.9 34 794-827 434-467 (650)
116 KOG1729 FYVE finger containing 56.5 3.4 7.4E-05 46.4 -0.2 65 579-643 13-81 (288)
117 PF10211 Ax_dynein_light: Axon 56.5 93 0.002 32.9 10.5 37 794-830 126-162 (189)
118 KOG0291 WD40-repeat-containing 56.5 5.3E+02 0.011 32.9 25.5 120 235-369 300-424 (893)
119 PF07798 DUF1640: Protein of u 56.2 52 0.0011 34.3 8.5 60 803-862 74-138 (177)
120 PF10458 Val_tRNA-synt_C: Valy 55.9 33 0.00073 29.8 5.9 57 800-856 2-65 (66)
121 KOG0230 Phosphatidylinositol-4 55.8 10 0.00022 50.4 3.7 34 581-616 92-125 (1598)
122 KOG3067 Translin family protei 55.5 67 0.0014 33.7 8.7 60 799-865 24-83 (226)
123 KOG4441 Proteins containing BT 55.4 1.4E+02 0.0031 37.1 13.5 22 461-482 509-530 (571)
124 KOG2391 Vacuolar sorting prote 55.1 29 0.00063 39.5 6.6 45 788-832 235-283 (365)
125 PF15358 TSKS: Testis-specific 54.9 1.6E+02 0.0035 34.4 12.4 63 776-838 116-188 (558)
126 KOG0278 Serine/threonine kinas 54.9 1.4E+02 0.003 33.0 11.4 91 274-387 134-228 (334)
127 COG4026 Uncharacterized protei 54.7 82 0.0018 33.9 9.4 37 952-990 229-265 (290)
128 PF07160 DUF1395: Protein of u 54.6 73 0.0016 35.1 9.7 72 794-865 5-81 (243)
129 PRK04325 hypothetical protein; 54.4 1.2E+02 0.0026 27.2 9.2 18 843-860 43-60 (74)
130 PF14643 DUF4455: Domain of un 54.3 39 0.00084 40.9 8.2 64 794-866 67-130 (473)
131 PF13863 DUF4200: Domain of un 54.2 1.1E+02 0.0024 29.7 10.0 59 800-858 37-95 (126)
132 PRK14161 heat shock protein Gr 53.9 73 0.0016 33.5 9.0 57 794-851 25-81 (178)
133 PF03310 Cauli_DNA-bind: Cauli 53.7 45 0.00098 32.6 6.8 22 832-853 50-71 (121)
134 smart00030 CLb CLUSTERIN Beta 53.5 57 0.0012 34.6 8.0 47 800-846 34-80 (206)
135 PHA02047 phage lambda Rz1-like 53.4 81 0.0017 29.6 8.0 28 801-828 33-60 (101)
136 COG0172 SerS Seryl-tRNA synthe 53.2 48 0.001 39.4 8.4 60 945-1004 242-318 (429)
137 PF11559 ADIP: Afadin- and alp 53.2 78 0.0017 32.0 9.0 56 803-858 60-115 (151)
138 KOG0649 WD40 repeat protein [G 53.1 1.3E+02 0.0029 33.1 10.8 150 290-479 18-173 (325)
139 PF11932 DUF3450: Protein of u 53.1 1.2E+02 0.0025 33.5 11.1 7 849-855 110-116 (251)
140 PF00038 Filament: Intermediat 52.9 85 0.0018 35.5 10.3 61 794-857 215-275 (312)
141 KOG0933 Structural maintenance 52.7 72 0.0016 41.3 10.1 70 795-864 815-884 (1174)
142 PF00261 Tropomyosin: Tropomyo 52.6 22 0.00047 38.9 5.2 37 794-830 28-64 (237)
143 PRK02793 phi X174 lysis protei 52.5 1.2E+02 0.0027 26.9 9.0 17 844-860 43-59 (72)
144 PF06092 DUF943: Enterobacteri 52.4 15 0.00033 37.6 3.6 27 981-1007 51-77 (157)
145 PF06785 UPF0242: Uncharacteri 52.3 80 0.0017 35.9 9.3 52 790-841 94-148 (401)
146 PLN02943 aminoacyl-tRNA ligase 52.2 25 0.00055 46.3 6.6 66 794-859 881-953 (958)
147 PF08614 ATG16: Autophagy prot 52.1 51 0.0011 34.9 7.8 33 794-826 115-147 (194)
148 PF06785 UPF0242: Uncharacteri 52.1 40 0.00086 38.2 7.0 40 794-833 140-179 (401)
149 KOG0315 G-protein beta subunit 52.0 3.8E+02 0.0082 29.8 17.0 209 286-532 10-242 (311)
150 PF09728 Taxilin: Myosin-like 51.9 79 0.0017 36.1 9.7 68 794-861 134-219 (309)
151 TIGR03752 conj_TIGR03752 integ 51.8 66 0.0014 38.5 9.2 33 794-826 65-97 (472)
152 COG3883 Uncharacterized protei 51.7 85 0.0018 35.0 9.5 64 797-860 40-103 (265)
153 PF10168 Nup88: Nuclear pore c 51.6 67 0.0014 41.0 9.9 58 803-860 566-623 (717)
154 PF15290 Syntaphilin: Golgi-lo 51.4 1.7E+02 0.0036 32.8 11.4 29 798-826 71-99 (305)
155 PLN02153 epithiospecifier prot 51.4 4.2E+02 0.0091 30.2 24.1 17 295-312 130-146 (341)
156 PF04508 Pox_A_type_inc: Viral 51.4 16 0.00034 25.3 2.4 18 795-812 1-18 (23)
157 COG4345 Uncharacterized protei 51.3 60 0.0013 33.3 7.5 51 805-855 121-171 (181)
158 KOG4001 Axonemal dynein light 51.3 97 0.0021 32.9 9.2 65 794-858 184-252 (259)
159 PRK14156 heat shock protein Gr 51.2 80 0.0017 33.2 8.8 57 794-851 33-89 (177)
160 TIGR01069 mutS2 MutS2 family p 51.1 61 0.0013 41.7 9.6 30 794-823 531-560 (771)
161 PF13851 GAS: Growth-arrest sp 51.1 59 0.0013 34.8 8.0 59 794-856 47-105 (201)
162 PF11068 YlqD: YlqD protein; 50.7 1.6E+02 0.0034 29.4 10.3 63 798-864 23-93 (131)
163 PF01920 Prefoldin_2: Prefoldi 50.6 1.4E+02 0.003 27.8 9.7 32 795-826 5-36 (106)
164 PF04012 PspA_IM30: PspA/IM30 50.5 74 0.0016 34.2 8.9 45 794-838 43-87 (221)
165 PF05377 FlaC_arch: Flagella a 50.5 56 0.0012 27.6 6.0 37 795-831 7-43 (55)
166 PRK13729 conjugal transfer pil 49.9 60 0.0013 39.0 8.4 51 946-1003 291-341 (475)
167 KOG0612 Rho-associated, coiled 49.8 1.6E+02 0.0035 39.1 12.6 47 817-863 488-534 (1317)
168 PRK10884 SH3 domain-containing 49.7 96 0.0021 33.4 9.3 27 794-820 99-125 (206)
169 TIGR01069 mutS2 MutS2 family p 49.4 76 0.0016 40.9 10.0 21 816-836 550-570 (771)
170 PRK14155 heat shock protein Gr 49.3 76 0.0016 34.2 8.5 39 794-832 19-57 (208)
171 PTZ00419 valyl-tRNA synthetase 49.0 27 0.00058 46.3 6.1 65 794-858 921-992 (995)
172 PF10805 DUF2730: Protein of u 48.7 1.5E+02 0.0031 28.5 9.5 66 794-859 34-101 (106)
173 PRK10884 SH3 domain-containing 48.5 1.4E+02 0.003 32.2 10.3 23 797-819 95-117 (206)
174 KOG4797 Transcriptional regula 48.4 67 0.0014 30.6 6.8 45 794-854 66-110 (123)
175 PRK00409 recombination and DNA 48.3 80 0.0017 40.8 10.0 15 796-810 538-552 (782)
176 PF12777 MT: Microtubule-bindi 48.2 81 0.0017 36.5 9.3 36 790-825 10-45 (344)
177 PRK09174 F0F1 ATP synthase sub 48.2 1.3E+02 0.0029 32.2 10.2 42 794-838 93-134 (204)
178 PF09006 Surfac_D-trimer: Lung 48.1 41 0.0009 27.3 4.6 26 798-823 2-27 (46)
179 PHA02713 hypothetical protein; 47.9 1.7E+02 0.0037 36.2 12.6 19 349-367 342-360 (557)
180 PRK14143 heat shock protein Gr 47.8 1.6E+02 0.0034 32.5 10.8 57 794-851 73-129 (238)
181 COG0576 GrpE Molecular chapero 47.7 90 0.002 33.2 8.7 57 794-851 42-98 (193)
182 PF06005 DUF904: Protein of un 47.7 97 0.0021 27.7 7.5 18 839-856 55-72 (72)
183 PF11932 DUF3450: Protein of u 47.4 1.1E+02 0.0023 33.8 9.7 14 847-860 101-114 (251)
184 PF10186 Atg14: UV radiation r 47.3 94 0.002 34.6 9.5 33 795-827 70-102 (302)
185 PF04899 MbeD_MobD: MbeD/MobD 47.2 31 0.00067 30.6 4.3 29 794-822 41-69 (70)
186 PF12325 TMF_TATA_bd: TATA ele 47.1 96 0.0021 30.5 8.1 62 794-855 50-114 (120)
187 PF00169 PH: PH domain; Inter 47.0 16 0.00035 32.9 2.7 38 14-51 66-104 (104)
188 PRK00888 ftsB cell division pr 46.8 54 0.0012 31.4 6.2 30 794-823 33-62 (105)
189 PF02646 RmuC: RmuC family; I 46.7 73 0.0016 36.3 8.4 94 784-877 16-186 (304)
190 PRK03947 prefoldin subunit alp 46.7 57 0.0012 32.5 6.8 45 794-849 5-49 (140)
191 PRK05729 valS valyl-tRNA synth 46.6 27 0.00059 45.6 5.6 63 794-856 803-872 (874)
192 COG3074 Uncharacterized protei 46.6 60 0.0013 28.5 5.7 31 794-824 17-47 (79)
193 KOG0804 Cytoplasmic Zn-finger 46.3 1.1E+02 0.0023 36.4 9.5 33 795-827 368-400 (493)
194 COG2900 SlyX Uncharacterized p 46.3 2.1E+02 0.0046 25.6 9.1 56 798-860 4-59 (72)
195 PF10168 Nup88: Nuclear pore c 46.3 91 0.002 39.8 9.9 11 189-199 41-51 (717)
196 PF14362 DUF4407: Domain of un 46.1 89 0.0019 35.3 9.1 61 801-861 134-206 (301)
197 PF08317 Spc7: Spc7 kinetochor 46.1 52 0.0011 37.8 7.2 11 846-856 278-288 (325)
198 TIGR03547 muta_rot_YjhT mutatr 45.9 5E+02 0.011 29.5 15.6 15 468-482 315-329 (346)
199 KOG0241 Kinesin-like protein [ 45.5 66 0.0014 41.2 8.0 63 794-859 370-433 (1714)
200 PF00038 Filament: Intermediat 45.5 1E+02 0.0022 34.9 9.4 39 813-851 100-138 (312)
201 KOG1029 Endocytic adaptor prot 45.4 67 0.0015 40.3 8.0 44 782-825 469-516 (1118)
202 TIGR01063 gyrA DNA gyrase, A s 45.3 8.3E+02 0.018 31.9 21.8 123 238-373 542-674 (800)
203 PLN02678 seryl-tRNA synthetase 45.3 98 0.0021 37.3 9.5 76 787-862 32-110 (448)
204 PRK00409 recombination and DNA 45.0 89 0.0019 40.4 9.7 9 828-836 567-575 (782)
205 COG3064 TolA Membrane protein 44.8 75 0.0016 35.9 7.6 23 822-844 146-168 (387)
206 PHA02790 Kelch-like protein; P 44.8 1.6E+02 0.0035 35.7 11.5 14 299-312 314-327 (480)
207 PF10473 CENP-F_leu_zip: Leuci 44.7 1.5E+02 0.0033 29.9 9.2 59 794-859 9-67 (140)
208 PF01519 DUF16: Protein of unk 44.6 1.3E+02 0.0028 28.7 8.0 48 799-860 50-97 (102)
209 KOG4715 SWI/SNF-related matrix 44.4 79 0.0017 35.6 7.7 26 794-819 220-245 (410)
210 KOG1760 Molecular chaperone Pr 44.4 1.4E+02 0.003 29.4 8.4 64 794-857 36-118 (131)
211 PHA02562 46 endonuclease subun 44.3 91 0.002 38.3 9.5 45 794-838 180-224 (562)
212 PF07888 CALCOCO1: Calcium bin 44.3 1.4E+02 0.0029 36.8 10.4 63 794-856 156-218 (546)
213 PF12777 MT: Microtubule-bindi 44.3 1.2E+02 0.0026 35.2 9.8 36 800-835 13-48 (344)
214 PRK06568 F0F1 ATP synthase sub 44.1 2.1E+02 0.0046 29.4 10.4 39 794-835 44-82 (154)
215 PF05622 HOOK: HOOK protein; 43.8 7.6 0.00017 49.4 0.0 69 795-863 291-382 (713)
216 cd01235 PH_SETbf Set binding f 43.8 18 0.0004 33.4 2.6 33 18-50 69-101 (101)
217 PF01093 Clusterin: Clusterin; 43.7 1.3E+02 0.0029 35.9 10.1 62 786-847 14-75 (436)
218 PF04102 SlyX: SlyX; InterPro 43.5 1E+02 0.0022 27.1 7.0 16 842-857 37-52 (69)
219 PRK00736 hypothetical protein; 43.5 2.1E+02 0.0046 25.2 8.9 16 844-859 40-55 (68)
220 smart00233 PH Pleckstrin homol 43.5 21 0.00045 31.5 2.8 35 16-50 66-101 (102)
221 TIGR02338 gimC_beta prefoldin, 43.3 1.9E+02 0.0041 27.7 9.5 34 794-827 9-42 (110)
222 PF13815 Dzip-like_N: Iguana/D 43.2 61 0.0013 31.5 6.2 28 800-827 78-105 (118)
223 KOG4403 Cell surface glycoprot 43.1 1.2E+02 0.0026 35.6 9.2 47 794-840 308-374 (575)
224 PRK14141 heat shock protein Gr 43.0 1.1E+02 0.0024 33.0 8.5 56 794-850 37-92 (209)
225 PF04111 APG6: Autophagy prote 42.9 1.6E+02 0.0034 33.8 10.4 34 794-827 49-82 (314)
226 PRK14131 N-acetylneuraminic ac 42.9 6E+02 0.013 29.5 17.1 18 295-312 131-148 (376)
227 COG1340 Uncharacterized archae 42.6 1.9E+02 0.004 32.8 10.4 33 826-858 210-242 (294)
228 PRK14154 heat shock protein Gr 42.5 1.3E+02 0.0027 32.5 8.8 56 795-851 59-114 (208)
229 PRK14140 heat shock protein Gr 42.5 1.4E+02 0.0031 31.7 9.1 56 794-850 43-98 (191)
230 PF04977 DivIC: Septum formati 42.5 53 0.0011 29.0 5.2 34 794-827 16-49 (80)
231 PRK14163 heat shock protein Gr 41.8 2.1E+02 0.0046 31.0 10.4 35 794-828 46-80 (214)
232 PRK14139 heat shock protein Gr 41.8 1.7E+02 0.0037 30.9 9.6 56 794-850 38-93 (185)
233 PF11853 DUF3373: Protein of u 41.6 23 0.0005 42.6 3.4 33 794-827 24-56 (489)
234 KOG0971 Microtubule-associated 41.6 1.3E+02 0.0028 38.6 9.7 35 794-828 409-443 (1243)
235 PF01025 GrpE: GrpE; InterPro 41.3 83 0.0018 32.1 7.2 39 794-832 17-55 (165)
236 KOG3433 Protein involved in me 40.7 1.3E+02 0.0029 31.4 8.2 64 798-861 84-147 (203)
237 TIGR03545 conserved hypothetic 40.7 1.1E+02 0.0024 37.8 9.2 15 840-854 243-257 (555)
238 cd01264 PH_melted Melted pleck 40.6 17 0.00038 34.5 1.8 29 19-47 70-98 (101)
239 PRK04406 hypothetical protein; 40.6 2.6E+02 0.0056 25.2 9.1 26 800-825 9-34 (75)
240 PRK10698 phage shock protein P 40.5 1.4E+02 0.0031 32.3 9.1 41 798-838 48-88 (222)
241 CHL00118 atpG ATP synthase CF0 40.5 2.3E+02 0.005 28.9 10.2 42 794-838 62-103 (156)
242 PRK13454 F0F1 ATP synthase sub 40.3 2.1E+02 0.0047 29.9 10.1 18 794-811 71-88 (181)
243 PF08537 NBP1: Fungal Nap bind 40.0 89 0.0019 35.6 7.5 34 794-827 174-207 (323)
244 COG4257 Vgb Streptogramin lyas 40.0 2.2E+02 0.0047 32.1 10.2 135 184-364 67-205 (353)
245 PRK13729 conjugal transfer pil 39.9 44 0.00095 40.1 5.4 25 836-860 103-127 (475)
246 COG3883 Uncharacterized protei 39.8 2.3E+02 0.0049 31.7 10.4 56 795-857 52-107 (265)
247 PF12329 TMF_DNA_bd: TATA elem 39.6 2.8E+02 0.0061 24.8 9.7 42 787-828 4-45 (74)
248 KOG3799 Rab3 effector RIM1 and 39.5 12 0.00026 36.8 0.6 36 602-643 81-116 (169)
249 TIGR00293 prefoldin, archaeal 39.5 59 0.0013 31.7 5.5 41 798-849 2-42 (126)
250 PRK14162 heat shock protein Gr 39.2 2.1E+02 0.0046 30.5 9.8 57 794-851 45-101 (194)
251 PF08317 Spc7: Spc7 kinetochor 39.2 1.8E+02 0.0038 33.5 10.1 14 806-819 213-226 (325)
252 PRK03564 formate dehydrogenase 39.0 23 0.00051 40.3 2.9 73 566-647 192-265 (309)
253 PF01486 K-box: K-box region; 39.0 1.7E+02 0.0036 27.5 8.2 60 794-855 18-86 (100)
254 COG1579 Zn-ribbon protein, pos 38.9 1.5E+02 0.0033 32.6 8.9 52 787-838 109-160 (239)
255 PRK00846 hypothetical protein; 38.7 1.4E+02 0.003 27.1 7.0 53 805-864 9-61 (77)
256 PRK14151 heat shock protein Gr 38.4 1.6E+02 0.0035 30.9 8.7 57 794-851 26-82 (176)
257 COG4741 Predicted secreted end 38.2 2.3E+02 0.0051 28.9 9.2 28 797-824 17-44 (175)
258 PRK06746 peptide chain release 38.2 1.9E+02 0.0042 33.3 9.9 49 818-866 33-84 (326)
259 PF15035 Rootletin: Ciliary ro 38.2 1.3E+02 0.0027 31.8 7.9 61 794-854 15-91 (182)
260 PRK06568 F0F1 ATP synthase sub 38.1 3.3E+02 0.0072 28.0 10.7 54 788-841 42-103 (154)
261 PRK14011 prefoldin subunit alp 38.0 77 0.0017 32.2 6.1 34 794-827 2-35 (144)
262 PF12709 Kinetocho_Slk19: Cent 37.9 1.2E+02 0.0025 28.2 6.6 24 803-826 50-73 (87)
263 PF15456 Uds1: Up-regulated Du 37.9 1.8E+02 0.0038 28.8 8.4 40 794-834 21-61 (124)
264 PF10224 DUF2205: Predicted co 37.7 1.6E+02 0.0035 26.9 7.4 29 794-822 22-50 (80)
265 KOG1900 Nuclear pore complex, 37.6 3E+02 0.0065 37.1 12.4 45 497-541 231-278 (1311)
266 PF12761 End3: Actin cytoskele 37.5 78 0.0017 33.7 6.2 58 795-858 96-153 (195)
267 PF14689 SPOB_a: Sensor_kinase 37.4 2E+02 0.0044 24.6 7.8 56 794-858 3-58 (62)
268 TIGR01843 type_I_hlyD type I s 37.3 1.6E+02 0.0035 34.4 9.8 64 797-860 205-269 (423)
269 PRK14160 heat shock protein Gr 37.3 1.7E+02 0.0038 31.6 8.9 64 797-862 56-119 (211)
270 KOG0993 Rab5 GTPase effector R 37.2 1.4 3E-05 50.4 -7.0 62 580-645 462-525 (542)
271 PRK14148 heat shock protein Gr 37.0 2.1E+02 0.0045 30.6 9.3 57 794-851 46-102 (195)
272 PF06364 DUF1068: Protein of u 37.0 1.2E+02 0.0026 31.3 7.1 51 794-846 79-136 (176)
273 PF09730 BicD: Microtubule-ass 37.0 1.7E+02 0.0037 37.2 10.1 65 795-859 391-462 (717)
274 PRK04325 hypothetical protein; 36.9 1.5E+02 0.0033 26.5 7.1 49 800-862 7-55 (74)
275 PRK07352 F0F1 ATP synthase sub 36.8 2.5E+02 0.0054 29.1 10.0 42 794-838 59-100 (174)
276 TIGR01562 FdhE formate dehydro 36.7 26 0.00055 39.9 2.7 55 584-647 208-265 (305)
277 PF10498 IFT57: Intra-flagella 36.6 1.9E+02 0.0041 33.8 9.8 47 816-862 266-312 (359)
278 COG4942 Membrane-bound metallo 36.6 1.1E+02 0.0023 36.4 7.7 20 806-825 63-82 (420)
279 KOG1003 Actin filament-coating 36.6 1.6E+02 0.0035 31.2 8.2 58 803-863 47-107 (205)
280 smart00338 BRLZ basic region l 36.5 61 0.0013 27.9 4.5 28 796-823 34-61 (65)
281 COG3599 DivIVA Cell division i 36.4 1.5E+02 0.0033 32.0 8.4 75 782-856 23-104 (212)
282 KOG0982 Centrosomal protein Nu 36.4 1.9E+02 0.0042 34.1 9.5 66 794-859 310-389 (502)
283 PF07989 Microtub_assoc: Micro 36.3 77 0.0017 28.5 5.2 27 795-821 43-69 (75)
284 PF07851 TMPIT: TMPIT-like pro 36.2 1.2E+02 0.0026 35.0 7.9 71 794-864 10-88 (330)
285 PF13805 Pil1: Eisosome compon 36.1 1.1E+02 0.0025 34.1 7.5 24 837-860 191-214 (271)
286 PF09074 Mer2: Mer2; InterPro 36.1 3.7E+02 0.008 28.6 10.7 20 835-854 75-94 (190)
287 cd07666 BAR_SNX7 The Bin/Amphi 36.0 1.3E+02 0.0029 33.1 8.0 48 794-841 162-209 (243)
288 PF10828 DUF2570: Protein of u 35.8 3.7E+02 0.008 25.8 10.2 43 794-836 24-66 (110)
289 PF06273 eIF-4B: Plant specifi 35.6 1.1E+02 0.0024 36.7 7.7 24 840-863 399-426 (492)
290 PF13851 GAS: Growth-arrest sp 35.5 3.6E+02 0.0077 28.9 11.0 68 794-861 99-174 (201)
291 COG1730 GIM5 Predicted prefold 35.5 1.2E+02 0.0025 30.9 6.8 46 794-850 5-50 (145)
292 PF07569 Hira: TUP1-like enhan 35.5 1.2E+02 0.0026 32.8 7.5 30 507-536 12-41 (219)
293 PF04762 IKI3: IKI3 family; I 35.4 1.2E+03 0.026 30.9 18.7 203 284-532 426-636 (928)
294 PF00804 Syntaxin: Syntaxin; 35.2 2.7E+02 0.0058 25.3 9.0 65 794-858 23-97 (103)
295 KOG0976 Rho/Rac1-interacting s 35.2 1.4E+02 0.0031 37.7 8.6 62 795-863 99-160 (1265)
296 COG4396 Mu-like prophage host- 35.1 1.8E+02 0.0039 29.0 7.8 58 794-857 17-74 (170)
297 PF14662 CCDC155: Coiled-coil 35.0 3.3E+02 0.0071 29.0 10.1 70 787-859 10-89 (193)
298 PRK14472 F0F1 ATP synthase sub 34.9 3E+02 0.0065 28.5 10.2 42 794-838 58-99 (175)
299 KOG1937 Uncharacterized conser 34.8 3.1E+02 0.0067 32.7 10.8 48 782-829 227-285 (521)
300 PRK14159 heat shock protein Gr 34.7 1.9E+02 0.0042 30.3 8.6 57 794-851 29-85 (176)
301 KOG4552 Vitamin-D-receptor int 34.6 2.2E+02 0.0048 30.4 8.8 44 794-837 73-116 (272)
302 smart00787 Spc7 Spc7 kinetocho 34.6 86 0.0019 35.9 6.5 26 794-819 217-242 (312)
303 cd01251 PH_centaurin_alpha Cen 34.6 27 0.00059 33.0 2.2 35 18-52 68-102 (103)
304 PF08614 ATG16: Autophagy prot 34.5 54 0.0012 34.7 4.6 33 794-826 101-133 (194)
305 PRK14144 heat shock protein Gr 34.4 2.4E+02 0.0052 30.2 9.3 57 794-851 51-107 (199)
306 PF05529 Bap31: B-cell recepto 34.4 58 0.0013 34.3 4.9 61 794-857 124-188 (192)
307 PRK04778 septation ring format 34.4 1.5E+02 0.0032 36.9 9.1 9 950-958 546-554 (569)
308 PF02344 Myc-LZ: Myc leucine z 34.3 1E+02 0.0023 23.0 4.5 27 796-822 2-28 (32)
309 PF13935 Ead_Ea22: Ead/Ea22-li 34.3 2.5E+02 0.0053 28.2 9.0 59 794-852 73-134 (139)
310 PF04420 CHD5: CHD5-like prote 34.1 1.1E+02 0.0023 31.6 6.5 34 794-827 46-91 (161)
311 PRK05560 DNA gyrase subunit A; 33.9 1.2E+03 0.026 30.4 21.8 119 238-369 544-672 (805)
312 PF10473 CENP-F_leu_zip: Leuci 33.8 3.2E+02 0.0069 27.7 9.6 61 798-858 69-140 (140)
313 KOG0291 WD40-repeat-containing 33.6 1.1E+03 0.025 30.1 25.0 119 342-485 300-424 (893)
314 PF13870 DUF4201: Domain of un 33.6 3.4E+02 0.0073 28.2 10.3 62 794-855 62-133 (177)
315 cd04779 HTH_MerR-like_sg4 Heli 33.5 1.6E+02 0.0035 29.4 7.5 14 851-864 110-123 (134)
316 PRK08475 F0F1 ATP synthase sub 33.4 3.9E+02 0.0084 27.6 10.6 43 794-839 62-104 (167)
317 PF06103 DUF948: Bacterial pro 33.3 3.8E+02 0.0082 24.5 10.2 44 795-838 26-69 (90)
318 cd01233 Unc104 Unc-104 pleckst 33.1 27 0.00059 32.7 1.9 34 18-51 66-99 (100)
319 PRK05759 F0F1 ATP synthase sub 33.0 3.5E+02 0.0076 27.2 10.2 41 794-837 44-84 (156)
320 PF07321 YscO: Type III secret 33.0 3.8E+02 0.0082 27.5 10.2 60 794-853 66-128 (152)
321 cd01236 PH_outspread Outspread 32.9 27 0.00058 33.4 1.8 31 18-48 72-102 (104)
322 PF09304 Cortex-I_coil: Cortex 32.6 2.8E+02 0.0061 26.7 8.4 39 798-837 47-85 (107)
323 TIGR00634 recN DNA repair prot 32.5 1.1E+02 0.0023 38.0 7.5 44 810-857 347-392 (563)
324 PF12824 MRP-L20: Mitochondria 32.4 1.1E+02 0.0024 31.7 6.4 53 789-841 85-162 (164)
325 CHL00019 atpF ATP synthase CF0 32.4 3.3E+02 0.0072 28.5 10.1 43 794-839 64-106 (184)
326 PRK14164 heat shock protein Gr 32.4 2E+02 0.0044 31.2 8.5 57 794-851 76-132 (218)
327 PF06156 DUF972: Protein of un 32.2 1.3E+02 0.0029 28.9 6.3 34 794-827 21-54 (107)
328 PRK14146 heat shock protein Gr 32.0 2.1E+02 0.0045 31.1 8.5 56 794-850 60-115 (215)
329 smart00706 TECPR Beta propelle 31.7 69 0.0015 23.8 3.5 24 341-364 9-33 (35)
330 COG0172 SerS Seryl-tRNA synthe 31.7 2.7E+02 0.0058 33.4 10.0 33 794-826 28-60 (429)
331 PRK14160 heat shock protein Gr 31.7 2.7E+02 0.0057 30.2 9.2 56 794-850 67-122 (211)
332 PRK12472 hypothetical protein; 31.6 1.5E+02 0.0033 35.6 7.9 33 794-826 217-249 (508)
333 PHA02790 Kelch-like protein; P 31.3 2.7E+02 0.0058 33.7 10.5 16 297-312 356-371 (480)
334 PRK13455 F0F1 ATP synthase sub 31.3 3.5E+02 0.0076 28.3 10.1 41 794-837 67-107 (184)
335 KOG3088 Secretory carrier memb 31.2 1.9E+02 0.004 32.6 8.0 17 787-803 59-75 (313)
336 PF14257 DUF4349: Domain of un 31.2 1.7E+02 0.0037 32.3 8.1 63 794-861 131-193 (262)
337 TIGR02169 SMC_prok_A chromosom 31.1 2E+02 0.0043 38.6 10.2 9 960-968 1059-1067(1164)
338 PRK14158 heat shock protein Gr 31.1 3.2E+02 0.0069 29.2 9.6 57 794-851 46-102 (194)
339 PF07303 Occludin_ELL: Occludi 31.0 1.7E+02 0.0036 27.9 6.8 47 794-840 21-69 (101)
340 PF04642 DUF601: Protein of un 30.8 2.6E+02 0.0056 30.7 8.8 73 787-863 152-243 (311)
341 PF10779 XhlA: Haemolysin XhlA 30.6 2E+02 0.0044 25.3 6.9 13 846-858 36-48 (71)
342 PF06698 DUF1192: Protein of u 30.6 1.1E+02 0.0025 26.2 5.0 24 804-827 23-46 (59)
343 PF04728 LPP: Lipoprotein leuc 30.6 1.7E+02 0.0038 24.9 5.9 35 794-828 9-43 (56)
344 PF14197 Cep57_CLD_2: Centroso 30.5 3.9E+02 0.0084 23.7 8.7 25 799-823 2-26 (69)
345 PRK14147 heat shock protein Gr 30.5 2.5E+02 0.0053 29.4 8.5 56 794-850 24-79 (172)
346 COG0525 ValS Valyl-tRNA synthe 30.5 88 0.0019 40.5 6.2 66 795-860 807-872 (877)
347 COG1340 Uncharacterized archae 30.4 2.9E+02 0.0062 31.4 9.5 64 795-863 214-277 (294)
348 PRK14145 heat shock protein Gr 30.2 3.2E+02 0.007 29.2 9.5 57 794-851 51-107 (196)
349 PRK00295 hypothetical protein; 30.2 3.8E+02 0.0083 23.6 9.0 15 844-858 40-54 (68)
350 PF06103 DUF948: Bacterial pro 30.2 4E+02 0.0087 24.3 9.1 17 803-819 48-64 (90)
351 PF07061 Swi5: Swi5; InterPro 30.2 1.5E+02 0.0032 27.3 6.0 19 842-860 38-58 (83)
352 cd00632 Prefoldin_beta Prefold 30.1 1.1E+02 0.0024 28.9 5.6 47 781-827 55-102 (105)
353 PLN02381 valyl-tRNA synthetase 30.1 72 0.0016 42.6 5.6 64 794-857 989-1059(1066)
354 PF01920 Prefoldin_2: Prefoldi 30.1 86 0.0019 29.2 4.8 47 781-827 54-101 (106)
355 smart00706 TECPR Beta propelle 30.0 91 0.002 23.2 3.9 25 285-309 8-33 (35)
356 PRK13460 F0F1 ATP synthase sub 30.0 4E+02 0.0088 27.5 10.2 42 794-838 56-97 (173)
357 PRK07857 hypothetical protein; 30.0 2.1E+02 0.0047 27.5 7.3 12 842-853 75-86 (106)
358 KOG3564 GTPase-activating prot 29.9 2.4E+02 0.0052 33.9 9.0 71 794-864 27-111 (604)
359 PF07975 C1_4: TFIIH C1-like d 29.9 14 0.00031 30.7 -0.5 28 589-616 2-35 (51)
360 PF09730 BicD: Microtubule-ass 29.8 3.2E+02 0.0069 34.9 10.8 58 794-858 264-321 (717)
361 KOG0250 DNA repair protein RAD 29.8 2.1E+02 0.0045 37.7 9.2 65 787-851 740-804 (1074)
362 PF06120 Phage_HK97_TLTM: Tail 29.8 4.1E+02 0.0088 30.4 10.7 19 794-812 87-105 (301)
363 PRK09343 prefoldin subunit bet 29.6 1.2E+02 0.0026 29.8 5.7 48 782-829 64-112 (121)
364 PRK01885 greB transcription el 29.6 1.3E+02 0.0028 30.9 6.3 46 817-862 26-72 (157)
365 PF07295 DUF1451: Protein of u 29.5 1.3E+02 0.0028 30.6 6.1 50 805-860 7-56 (146)
366 PF07798 DUF1640: Protein of u 29.5 1.8E+02 0.0039 30.4 7.4 10 816-825 127-136 (177)
367 PRK07353 F0F1 ATP synthase sub 29.5 4.6E+02 0.01 25.8 10.2 42 794-838 45-86 (140)
368 PF03357 Snf7: Snf7; InterPro 29.4 3.2E+02 0.007 27.6 9.3 34 797-830 3-36 (171)
369 TIGR02169 SMC_prok_A chromosom 29.3 2.2E+02 0.0048 38.1 10.2 12 960-971 1071-1082(1164)
370 PF04568 IATP: Mitochondrial A 29.2 1E+02 0.0022 29.4 4.9 25 802-826 72-100 (100)
371 PF03920 TLE_N: Groucho/TLE N- 29.2 95 0.0021 30.9 4.8 42 782-823 17-58 (135)
372 TIGR00019 prfA peptide chain r 29.2 3.3E+02 0.0071 31.9 10.0 49 818-866 55-109 (360)
373 PF10018 Med4: Vitamin-D-recep 29.1 1.3E+02 0.0028 31.8 6.4 41 787-827 11-54 (188)
374 PRK10636 putative ABC transpor 29.0 1.6E+02 0.0036 37.0 8.4 64 797-860 558-628 (638)
375 PRK12704 phosphodiesterase; Pr 29.0 1.7E+02 0.0037 36.0 8.2 14 824-837 143-156 (520)
376 cd00900 PH-like Pleckstrin hom 29.0 31 0.00068 30.2 1.5 31 17-47 64-97 (99)
377 PRK06569 F0F1 ATP synthase sub 28.9 5.4E+02 0.012 26.5 10.4 21 794-814 50-70 (155)
378 PF06008 Laminin_I: Laminin Do 28.9 1.9E+02 0.004 32.2 7.9 58 803-860 53-110 (264)
379 KOG4360 Uncharacterized coiled 28.9 3.4E+02 0.0074 32.9 10.0 22 839-860 263-284 (596)
380 PF01166 TSC22: TSC-22/dip/bun 28.9 68 0.0015 27.4 3.2 31 794-824 13-43 (59)
381 KOG0804 Cytoplasmic Zn-finger 28.8 2.8E+02 0.006 33.1 9.2 19 839-857 430-448 (493)
382 cd00632 Prefoldin_beta Prefold 28.8 4.7E+02 0.01 24.7 9.5 32 795-826 6-37 (105)
383 PF10422 LRS4: Monopolin compl 28.8 19 0.00041 39.3 0.0 58 794-854 57-114 (249)
384 PF13747 DUF4164: Domain of un 28.8 3.8E+02 0.0083 24.9 8.6 16 835-850 72-87 (89)
385 PF12352 V-SNARE_C: Snare regi 28.7 1.8E+02 0.0039 24.9 6.1 48 815-862 7-54 (66)
386 KOG1841 Smad anchor for recept 28.7 61 0.0013 42.4 4.3 54 579-647 650-703 (1287)
387 PF11382 DUF3186: Protein of u 28.7 1.2E+02 0.0027 34.5 6.6 29 799-827 36-64 (308)
388 PF03961 DUF342: Protein of un 28.6 1.5E+02 0.0034 35.5 7.7 21 794-814 340-360 (451)
389 PF00015 MCPsignal: Methyl-acc 28.6 2.8E+02 0.0061 28.9 9.0 28 794-821 81-108 (213)
390 KOG0239 Kinesin (KAR3 subfamil 28.6 2.7E+02 0.0059 35.4 10.0 41 794-834 240-280 (670)
391 PRK00736 hypothetical protein; 28.3 2.5E+02 0.0053 24.8 6.9 46 803-862 6-51 (68)
392 COG1196 Smc Chromosome segrega 28.3 2.2E+02 0.0048 38.6 9.9 9 954-962 588-596 (1163)
393 TIGR02338 gimC_beta prefoldin, 28.3 1.4E+02 0.0031 28.5 6.0 48 782-829 60-108 (110)
394 PF07889 DUF1664: Protein of u 28.3 3.5E+02 0.0075 26.9 8.6 35 804-838 63-100 (126)
395 PRK14473 F0F1 ATP synthase sub 28.2 4.6E+02 0.01 26.7 10.1 40 794-836 48-87 (164)
396 PF07926 TPR_MLP1_2: TPR/MLP1/ 28.1 5.6E+02 0.012 25.3 10.3 54 798-851 20-73 (132)
397 PRK14157 heat shock protein Gr 28.0 2.6E+02 0.0056 30.6 8.4 56 794-850 83-138 (227)
398 KOG3576 Ovo and related transc 28.0 15 0.00031 38.9 -0.9 33 583-615 114-158 (267)
399 TIGR01010 BexC_CtrB_KpsE polys 28.0 1.4E+02 0.003 34.7 7.0 47 816-862 221-267 (362)
400 PF07111 HCR: Alpha helical co 28.0 3.9E+02 0.0085 33.7 10.7 62 803-864 163-235 (739)
401 PF13094 CENP-Q: CENP-Q, a CEN 27.9 4E+02 0.0086 27.2 9.6 60 794-860 26-85 (160)
402 COG1196 Smc Chromosome segrega 27.8 2.6E+02 0.0056 38.0 10.3 8 963-970 1066-1073(1163)
403 PTZ00464 SNF-7-like protein; P 27.8 3.7E+02 0.008 29.1 9.5 31 798-828 21-51 (211)
404 PF00015 MCPsignal: Methyl-acc 27.7 5.3E+02 0.012 26.8 10.9 39 823-861 166-204 (213)
405 KOG0245 Kinesin-like protein [ 27.7 1.8E+02 0.0039 38.0 8.0 56 794-859 367-445 (1221)
406 smart00787 Spc7 Spc7 kinetocho 27.7 3.3E+02 0.0071 31.3 9.7 21 806-826 208-228 (312)
407 KOG0999 Microtubule-associated 27.7 1.6E+02 0.0034 35.8 7.1 59 786-859 154-229 (772)
408 TIGR01461 greB transcription e 27.7 1.2E+02 0.0026 31.1 5.6 47 816-863 23-71 (156)
409 PHA03011 hypothetical protein; 27.6 2.5E+02 0.0053 26.6 6.9 52 794-859 63-114 (120)
410 TIGR03548 mutarot_permut cycli 27.6 3.4E+02 0.0074 30.6 10.0 17 295-312 116-132 (323)
411 cd07612 BAR_Bin2 The Bin/Amphi 27.5 1.5E+02 0.0033 32.0 6.5 25 828-855 140-164 (211)
412 PF04841 Vps16_N: Vps16, N-ter 27.4 1.1E+03 0.024 28.0 17.2 26 508-533 217-244 (410)
413 cd01238 PH_Tec Tec pleckstrin 27.3 38 0.00081 32.2 1.8 32 18-49 75-106 (106)
414 PF11365 DUF3166: Protein of u 27.3 1.2E+02 0.0026 28.7 4.9 75 788-862 4-87 (96)
415 TIGR01843 type_I_hlyD type I s 27.2 2.8E+02 0.0061 32.4 9.6 21 842-862 244-264 (423)
416 PRK10698 phage shock protein P 27.2 2.1E+02 0.0045 31.1 7.7 45 794-838 98-147 (222)
417 cd07599 BAR_Rvs167p The Bin/Am 27.1 1.5E+02 0.0034 31.7 6.7 17 839-855 158-174 (216)
418 PRK14471 F0F1 ATP synthase sub 27.1 5.3E+02 0.011 26.3 10.4 19 794-812 48-66 (164)
419 PF00170 bZIP_1: bZIP transcri 27.1 1.7E+02 0.0038 25.0 5.7 33 794-826 25-57 (64)
420 PF05377 FlaC_arch: Flagella a 27.0 4E+02 0.0086 22.7 7.7 47 797-857 2-48 (55)
421 PF00170 bZIP_1: bZIP transcri 26.9 1.6E+02 0.0034 25.3 5.4 25 803-827 27-51 (64)
422 PF04899 MbeD_MobD: MbeD/MobD 26.9 4.6E+02 0.0099 23.4 8.9 59 799-860 7-65 (70)
423 PHA01754 hypothetical protein 26.8 70 0.0015 27.3 3.0 25 826-850 24-54 (69)
424 KOG0995 Centromere-associated 26.6 2.9E+02 0.0062 34.0 9.1 70 794-863 307-393 (581)
425 PF05529 Bap31: B-cell recepto 26.6 3.1E+02 0.0068 28.8 8.8 52 804-855 120-172 (192)
426 TIGR02977 phageshock_pspA phag 26.6 2.1E+02 0.0047 30.8 7.7 45 794-838 98-147 (219)
427 PF03885 DUF327: Protein of un 26.4 3.2E+02 0.007 27.7 8.4 84 780-863 27-124 (147)
428 KOG0977 Nuclear envelope prote 26.3 5.8E+02 0.013 31.6 11.7 21 944-964 436-456 (546)
429 TIGR03185 DNA_S_dndD DNA sulfu 26.1 2.7E+02 0.0059 35.2 9.6 36 794-829 215-250 (650)
430 KOG0646 WD40 repeat protein [G 26.0 1.2E+03 0.026 28.0 15.9 98 172-296 85-186 (476)
431 PF10073 DUF2312: Uncharacteri 26.0 2.2E+02 0.0048 25.6 6.1 48 801-848 3-50 (74)
432 PF07464 ApoLp-III: Apolipopho 26.0 1.1E+02 0.0023 31.6 4.8 53 804-862 29-81 (155)
433 PF10205 KLRAQ: Predicted coil 26.0 2E+02 0.0043 27.5 6.2 11 795-805 5-15 (102)
434 COG5490 Uncharacterized conser 25.9 3.8E+02 0.0081 27.2 8.3 40 821-861 114-155 (158)
435 cd07588 BAR_Amphiphysin The Bi 25.9 1.5E+02 0.0033 32.0 6.2 22 831-855 143-164 (211)
436 PF05911 DUF869: Plant protein 25.8 3.1E+02 0.0068 35.3 9.9 63 794-856 595-657 (769)
437 PF13600 DUF4140: N-terminal d 25.8 1.3E+02 0.0029 28.2 5.2 33 794-826 69-101 (104)
438 PF13094 CENP-Q: CENP-Q, a CEN 25.5 5.1E+02 0.011 26.4 9.9 43 796-838 42-84 (160)
439 COG2433 Uncharacterized conser 25.5 1.7E+02 0.0037 36.1 7.1 24 510-533 246-270 (652)
440 TIGR02894 DNA_bind_RsfA transc 25.4 2.8E+02 0.006 28.7 7.5 33 794-826 103-135 (161)
441 KOG4514 Uncharacterized conser 25.4 8.2E+02 0.018 25.8 11.1 27 828-857 186-212 (222)
442 cd07627 BAR_Vps5p The Bin/Amph 25.3 4.6E+02 0.01 28.2 9.9 35 794-828 121-162 (216)
443 PF07926 TPR_MLP1_2: TPR/MLP1/ 25.3 6.4E+02 0.014 24.9 10.2 21 806-826 63-83 (132)
444 PF04841 Vps16_N: Vps16, N-ter 25.2 1.2E+03 0.026 27.7 19.7 69 234-310 82-153 (410)
445 PRK00295 hypothetical protein; 25.2 3E+02 0.0066 24.2 6.9 46 803-862 6-51 (68)
446 PRK09173 F0F1 ATP synthase sub 25.2 3.8E+02 0.0081 27.3 8.8 40 794-836 42-81 (159)
447 PF10267 Tmemb_cc2: Predicted 25.1 5.4E+02 0.012 30.6 10.9 32 807-838 249-280 (395)
448 cd01246 PH_oxysterol_bp Oxyste 25.0 51 0.0011 29.4 2.1 32 17-48 58-90 (91)
449 PRK14149 heat shock protein Gr 25.0 3.6E+02 0.0078 28.8 8.6 56 794-850 42-97 (191)
450 PF11544 Spc42p: Spindle pole 25.0 2.7E+02 0.0059 25.2 6.4 19 794-812 18-36 (76)
451 PF07200 Mod_r: Modifier of ru 24.9 4.4E+02 0.0095 26.4 9.2 42 795-836 55-96 (150)
452 COG4942 Membrane-bound metallo 24.9 4.8E+02 0.01 31.2 10.4 13 950-962 394-406 (420)
453 PF06008 Laminin_I: Laminin Do 24.9 3.5E+02 0.0076 30.0 9.2 64 795-858 52-115 (264)
454 PF06216 RTBV_P46: Rice tungro 24.9 1.5E+02 0.0033 32.3 5.8 33 794-826 77-109 (389)
455 KOG2106 Uncharacterized conser 24.9 1.3E+03 0.029 28.1 19.4 30 510-539 452-481 (626)
456 PF10046 BLOC1_2: Biogenesis o 24.9 3E+02 0.0066 25.9 7.4 23 795-817 35-57 (99)
457 PRK02793 phi X174 lysis protei 24.8 3.1E+02 0.0067 24.4 6.9 47 802-862 8-54 (72)
458 KOG0982 Centrosomal protein Nu 24.8 2.4E+02 0.0052 33.4 7.7 71 794-864 249-334 (502)
459 PF01496 V_ATPase_I: V-type AT 24.7 3.4E+02 0.0074 35.0 10.2 54 794-847 228-281 (759)
460 KOG3990 Uncharacterized conser 24.7 1.5E+02 0.0033 32.5 5.8 34 794-827 224-257 (305)
461 PF09006 Surfac_D-trimer: Lung 24.7 1.1E+02 0.0025 24.8 3.7 22 804-825 1-22 (46)
462 PF00804 Syntaxin: Syntaxin; 24.7 2.4E+02 0.0052 25.7 6.7 16 796-811 8-23 (103)
463 PRK14127 cell division protein 24.7 1.6E+02 0.0034 28.6 5.4 46 782-827 23-69 (109)
464 PRK09343 prefoldin subunit bet 24.7 6.7E+02 0.014 24.5 10.1 34 794-827 13-46 (121)
465 PRK06231 F0F1 ATP synthase sub 24.7 6.2E+02 0.013 27.1 10.6 41 794-837 88-128 (205)
466 PRK13454 F0F1 ATP synthase sub 24.7 5.8E+02 0.012 26.7 10.2 11 827-837 116-126 (181)
467 PF05508 Ran-binding: RanGTP-b 24.6 2.5E+02 0.0055 31.9 7.8 57 805-862 80-136 (302)
468 TIGR02231 conserved hypothetic 24.5 3.2E+02 0.007 33.5 9.6 25 952-977 318-347 (525)
469 PF07716 bZIP_2: Basic region 24.5 1.8E+02 0.004 24.0 5.2 30 794-823 24-53 (54)
470 PF08287 DASH_Spc19: Spc19; I 24.5 1.1E+02 0.0024 31.3 4.7 31 794-824 74-104 (153)
471 PF09787 Golgin_A5: Golgin sub 24.4 1.3E+02 0.0028 36.8 6.1 14 794-807 122-135 (511)
472 PF05384 DegS: Sensor protein 24.4 5E+02 0.011 26.8 9.3 70 784-860 73-149 (159)
473 KOG3366 Mitochondrial F1F0-ATP 24.3 2.2E+02 0.0048 29.6 6.7 61 787-847 55-125 (172)
474 PF06320 GCN5L1: GCN5-like pro 24.3 2.6E+02 0.0056 27.5 7.0 31 796-826 55-85 (121)
475 cd00890 Prefoldin Prefoldin is 24.2 83 0.0018 30.5 3.6 43 799-852 3-45 (129)
476 KOG0996 Structural maintenance 24.2 3.2E+02 0.0068 36.5 9.3 61 803-863 508-568 (1293)
477 KOG1962 B-cell receptor-associ 24.2 2.7E+02 0.0059 30.2 7.6 66 779-844 142-210 (216)
478 PF06428 Sec2p: GDP/GTP exchan 24.2 88 0.0019 29.8 3.5 65 794-859 14-80 (100)
479 PF10883 DUF2681: Protein of u 24.1 1.7E+02 0.0037 27.2 5.2 31 797-827 25-55 (87)
480 PF04201 TPD52: Tumour protein 24.1 2.2E+02 0.0047 29.5 6.6 41 782-825 26-66 (162)
481 PF12128 DUF3584: Protein of u 24.1 3.2E+02 0.0068 37.3 10.1 77 784-860 624-701 (1201)
482 PF08826 DMPK_coil: DMPK coile 24.1 3.1E+02 0.0066 23.8 6.4 7 847-853 49-55 (61)
483 PRK09039 hypothetical protein; 24.1 2.6E+02 0.0057 32.4 8.2 62 788-856 123-184 (343)
484 PF05082 Rop-like: Rop-like; 24.0 3.2E+02 0.007 24.1 6.6 18 795-812 9-26 (66)
485 cd01257 PH_IRS Insulin recepto 23.9 58 0.0013 30.9 2.3 37 12-48 63-100 (101)
486 KOG2911 Uncharacterized conser 23.9 3.7E+02 0.008 32.0 9.1 29 795-823 240-268 (439)
487 TIGR03513 GldL_gliding gliding 23.9 4.4E+02 0.0095 28.3 9.0 55 794-855 136-190 (202)
488 PRK13461 F0F1 ATP synthase sub 23.9 6.3E+02 0.014 25.6 10.1 16 794-809 45-60 (159)
489 TIGR01063 gyrA DNA gyrase, A s 23.8 1.7E+03 0.037 29.0 21.6 213 291-536 543-770 (800)
490 TIGR00293 prefoldin, archaeal 23.8 2.2E+02 0.0048 27.6 6.6 32 794-825 5-36 (126)
491 PF11471 Sugarporin_N: Maltopo 23.7 1.3E+02 0.0028 25.9 4.1 23 806-828 29-51 (60)
492 PF00430 ATP-synt_B: ATP synth 23.5 3.8E+02 0.0082 25.9 8.2 42 794-838 39-80 (132)
493 PRK14154 heat shock protein Gr 23.5 6.4E+02 0.014 27.3 10.3 69 794-862 72-152 (208)
494 PF07544 Med9: RNA polymerase 23.4 1.1E+02 0.0025 27.8 4.1 41 787-827 30-70 (83)
495 COG5185 HEC1 Protein involved 23.4 2.7E+02 0.0059 33.3 7.9 22 841-862 404-428 (622)
496 PF11577 NEMO: NF-kappa-B esse 23.3 4E+02 0.0086 23.6 7.1 14 838-851 53-66 (68)
497 PRK14475 F0F1 ATP synthase sub 23.3 6.4E+02 0.014 25.9 10.1 17 794-810 50-66 (167)
498 PF04216 FdhE: Protein involve 23.2 30 0.00064 39.1 0.3 66 583-648 169-252 (290)
499 PF06102 DUF947: Domain of unk 23.2 3.6E+02 0.0077 28.1 8.1 60 788-849 58-119 (168)
500 PF04048 Sec8_exocyst: Sec8 ex 23.2 3.2E+02 0.0069 27.5 7.6 60 794-860 78-139 (142)
No 1
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton]
Probab=100.00 E-value=2.9e-46 Score=417.57 Aligned_cols=367 Identities=26% Similarity=0.451 Sum_probs=299.0
Q ss_pred cccccCCCCcEEEEcCCCCCCccCCCCCcCCccccccccccceEEeccc--CCCCEEEEEecCcEEEEEEcCCeEEEEeC
Q 001721 182 GHDDGDSLGDVFIWGECTGDGILGGGIHRSGSYAGVKMDSFVPKAVESA--VVLDVQNIACGGRHAALVTKQGEVFSWGE 259 (1020)
Q Consensus 182 ~~~~lds~G~Vy~WG~n~~~GqLG~g~~~~~~~~~~~~~~~~P~~v~~~--~~~~I~~Ia~G~~hs~~Lt~dG~Vy~wG~ 259 (1020)
+......-++||+||.|. .++||+|.+. ..+..|+.+... ....|++++||+.|+++|+.||.||+||.
T Consensus 60 ~~~~~~~~~~v~~~Gsn~-~~eLGlg~de--------~~~~~P~~~~~~~~d~~~i~~~acGg~hsl~ld~Dg~lyswG~ 130 (476)
T COG5184 60 HTHLLVKMASVYSWGSNG-MNELGLGNDE--------TKVDRPQLNPFGRIDKASIIKIACGGNHSLGLDHDGNLYSWGD 130 (476)
T ss_pred chhhhhheeeeEEEecCc-ceeeccCCch--------hcccCceecCcccccceeeEEeecCCceEEeecCCCCEEEecc
Confidence 344678889999999999 9999999874 346788887765 56899999999999999999999999999
Q ss_pred CCCCccCCCCC----------------CCCCcceEeec----cCCCcEEEEEecCCEEEEEEeCCcEEEeCCCCCCCccc
Q 001721 260 ELGGRLGHGVD----------------SDVSHPKLIDA----LKNINVELVACGEHHTCAVTLSGDMYTWGGSNCNFGLL 319 (1020)
Q Consensus 260 N~~GqLG~g~~----------------~~~~~P~~V~~----l~~~~I~~VacG~~ht~aLT~dG~VysWG~n~~~~GqL 319 (1020)
|..|+||.... .....|..|+. ....+|++++||++++++|+++|+||.||.+ ..+.+
T Consensus 131 N~~G~Lgr~~~~~~~~~~~~~~~~~~~~~~~tP~~v~~~s~~~s~~~vv~l~cg~e~svil~~~G~V~~~gt~--r~~e~ 208 (476)
T COG5184 131 NDDGALGRDIHKDICDQNNDIIDFDDYELESTPFKVPGGSSAKSHLRVVKLACGWEISVILTADGRVYSWGTF--RCGEL 208 (476)
T ss_pred CcccccccccccccccccccccccchhhcccCCceeeccccccCChheEEeecCCceEEEEccCCcEEEecCc--ccccc
Confidence 99999997661 12467777776 2234799999999999999999999999988 55666
Q ss_pred CCCCCc--c----eecceeeCCCCCCCcEEEEEecCCeEEEEEcCCcEEEeccCCCCcCCCCCCcccccceeeccCCCC-
Q 001721 320 GHGNEM--S----LWLPKKLNGPLEGIHVSSVSCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRISVSTPREVDSLKGL- 392 (1020)
Q Consensus 320 G~g~~~--~----~~~P~~I~~~l~~~~Iv~VacG~~Hs~aLt~~G~Vy~wG~N~~GQLG~g~~~~~~~P~~V~~l~~~- 392 (1020)
+.+... . .++|.++. ...|+++++|.+|.++|+++|+||+||+|.+||||.........+..+..+...
T Consensus 209 ~~g~~~~s~k~~~~~~p~~v~----~~~i~qla~G~dh~i~lt~~G~vy~~Gs~qkgqlG~~~~e~~~~~~lv~~~f~i~ 284 (476)
T COG5184 209 GQGSYKNSQKTSIQFTPLKVP----KKAIVQLAAGADHLIALTNEGKVYGWGSNQKGQLGRPTSERLKLVVLVGDPFAIR 284 (476)
T ss_pred ccccccccccceeeeeeeecC----chheeeeccCCceEEEEecCCcEEEecCCcccccCCchhhhcccccccCChhhhh
Confidence 655322 2 24455443 357999999999999999999999999999999999887777666666544333
Q ss_pred eEEEEecCCceEEEEEEeeecCcccccCCCCcEEEecCCCCCCcCCCCC----CcceecEEeeccCCCCeeEEEeeCcEE
Q 001721 393 RTVRAACGVWHTAAVVEVMVGSSSSSNCSSGKLFTWGDGDRGRLGHGDK----EARLVPTCVAALVEPNFCQVSCGHSLT 468 (1020)
Q Consensus 393 ~I~~IacG~~ht~aLtE~~~~~~~~~~~~~G~Ly~WG~n~~GQLG~g~~----~~~~~Pt~V~~l~~~~I~~Ia~G~~ht 468 (1020)
.|..|+||.+|++||. .+|++|+||.|.+||||.+.. .....|+....+.+..|..|++|..|+
T Consensus 285 ~i~~vacG~~h~~al~------------~~G~i~a~G~n~fgqlg~~~~~~~~a~~tk~~~~~~~~~~~i~~is~ge~H~ 352 (476)
T COG5184 285 NIKYVACGKDHSLALD------------EDGEIYAWGVNIFGQLGAGSDGEIGALTTKPNYKQLLSGVTICSISAGESHS 352 (476)
T ss_pred hhhhcccCcceEEEEc------------CCCeEEEeccchhcccccCcccccceeeccccccccCCCceEEEEecCcceE
Confidence 3688999999999998 599999999999999999821 224566666667777899999999999
Q ss_pred EEEecCCcEEEEeCCCCCCCCCCCCCC---CcceeeccccCCCcEEEEEecCcEEEEEeCCCeEEEEeCCCCCCCCCCCC
Q 001721 469 VALTTTGHVYTMGSPVYGQLGDPKANG---KLPTRVEGKLTKNFVEEIACGDYHVAVLTSRTEVYTWGKGANGRLGHGDT 545 (1020)
Q Consensus 469 laLT~dG~Vy~wG~N~~GQLG~~~~~~---~~P~~v~~~l~~~~I~~Ia~G~~HslaLTsdG~VytWG~n~~GQLG~G~~ 545 (1020)
++|..+|.||.||.+..||||.+.... ..|..+. ....+.+|+||..|.++.+.+|+||.||+|.+|+||.|+.
T Consensus 353 l~L~~~G~l~a~Gr~~~~qlg~~~~~~~~~~~~~~ls---~~~~~~~v~~gt~~~~~~t~~gsvy~wG~ge~gnlG~g~~ 429 (476)
T COG5184 353 LILRKDGTLYAFGRGDRGQLGIQEEITIDVSTPTKLS---VAIKLEQVACGTHHNIARTDDGSVYSWGWGEHGNLGNGPK 429 (476)
T ss_pred EEEecCceEEEecCCccccccCcccceeecCCccccc---cccceEEEEecCccceeeccCCceEEecCchhhhccCCch
Confidence 999999999999999999999987332 2233222 1246999999999999999999999999999999999984
Q ss_pred -CCcccCceeec--ccccceEEEEecCCcceeeeee
Q 001721 546 -DDRNFPSLVEA--LKDKQVKSIVCGTSFTAAICLH 578 (1020)
Q Consensus 546 -~~~~~P~~V~~--l~~~~V~~IacG~~~T~aL~~~ 578 (1020)
++...|+++.. +....++..-||.+++++...+
T Consensus 430 ~~~~~~pt~i~~~~~~~~~~i~~g~~~~~~v~~~~~ 465 (476)
T COG5184 430 EADVLVPTLIRQPLLSGHNIILAGYGNQFSVIEETM 465 (476)
T ss_pred hhhccccccccccccCCCceEEeccCcceEEEecch
Confidence 56677888873 6777888888888777766543
No 2
>KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown]
Probab=100.00 E-value=2.9e-40 Score=346.87 Aligned_cols=362 Identities=24% Similarity=0.437 Sum_probs=305.7
Q ss_pred CCCCcEEEEcCCCCCCccCCCCCcCCccccccccccceEEecccCCCCEEEEEec--CcEEEEEEcCCeEEEEeCCCCCc
Q 001721 187 DSLGDVFIWGECTGDGILGGGIHRSGSYAGVKMDSFVPKAVESAVVLDVQNIACG--GRHAALVTKQGEVFSWGEELGGR 264 (1020)
Q Consensus 187 ds~G~Vy~WG~n~~~GqLG~g~~~~~~~~~~~~~~~~P~~v~~~~~~~I~~Ia~G--~~hs~~Lt~dG~Vy~wG~N~~Gq 264 (1020)
..-|++...|... ..+.|.-+-. ......-|.++..+...+|+-|+.| ..|+++|+-+|+.|+||.|..||
T Consensus 17 ~~~g~ml~~g~v~-wd~tgkRd~~------~~~NL~sphR~~~l~gv~iR~VasG~~aaH~vli~megk~~~wGRNekGQ 89 (443)
T KOG1427|consen 17 EKGGEMLFCGAVA-WDITGKRDGA------MEGNLVSPHRLRPLVGVNIRFVASGCAAAHCVLIDMEGKCYTWGRNEKGQ 89 (443)
T ss_pred cCCccEEEeccch-hhhhcccccc------cccccccceeccccccceEEEEecccchhhEEEEecccceeecccCccCc
Confidence 3457888888877 6666544321 1135677888888888999999877 67999999999999999999999
Q ss_pred cCCCCCCCCCcceEeeccCCCcEEEEEecCCEEEEEEeCCcEEEeCCCCCCCcccCCCCCcc-eecceeeCCCCCCCcEE
Q 001721 265 LGHGVDSDVSHPKLIDALKNINVELVACGEHHTCAVTLSGDMYTWGGSNCNFGLLGHGNEMS-LWLPKKLNGPLEGIHVS 343 (1020)
Q Consensus 265 LG~g~~~~~~~P~~V~~l~~~~I~~VacG~~ht~aLT~dG~VysWG~n~~~~GqLG~g~~~~-~~~P~~I~~~l~~~~Iv 343 (1020)
||+++......|+.|+.|...+|++.+||++|+++||++|.||.||.| .+||||.++... ...|..+. ..+..|+
T Consensus 90 LGhgD~k~~e~Ptvi~gL~~~~iv~AA~GrnHTl~ltdtG~v~afGeN--K~GQlGlgn~~~~v~s~~~~~--~~~~~v~ 165 (443)
T KOG1427|consen 90 LGHGDMKQRERPTVISGLSKHKIVKAAAGRNHTLVLTDTGQVLAFGEN--KYGQLGLGNAKNEVESTPLPC--VVSDEVT 165 (443)
T ss_pred cCccchhhccCCchhhhhhhhhHHHHhhccCcEEEEecCCcEEEeccc--ccccccccccccccccCCCcc--ccCccce
Confidence 999998899999999999999999999999999999999999999999 899999998653 22333222 2245799
Q ss_pred EEEecCCeEEEEEcCCcEEEeccCCCCcCCCCCCcc--------------cccceeeccCCCCeEEEEecCCceEEEEEE
Q 001721 344 SVSCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRIS--------------VSTPREVDSLKGLRTVRAACGVWHTAAVVE 409 (1020)
Q Consensus 344 ~VacG~~Hs~aLt~~G~Vy~wG~N~~GQLG~g~~~~--------------~~~P~~V~~l~~~~I~~IacG~~ht~aLtE 409 (1020)
.|+||..+++.|+..+.|.++|...||||||+.... ...|..|..+.+..|++++||.+||++|.
T Consensus 166 ~v~cga~ftv~l~~~~si~t~glp~ygqlgh~td~~~~~~~~~~~~~~e~~pr~~~i~~~dgvqiv~~acg~nhtvavd- 244 (443)
T KOG1427|consen 166 NVACGADFTVWLSSTESILTAGLPQYGQLGHGTDNEFNMKDSSVRLAYEAQPRPKAIASLDGVQIVKVACGTNHTVAVD- 244 (443)
T ss_pred eeccccceEEEeecccceeecCCccccccccCcchhhccccccceeeeecCCCccccccccceeeEEEeccCcceeeec-
Confidence 999999999999999999999999999999985432 34577788899999999999999999997
Q ss_pred eeecCcccccCCCCcEEEecCCCCCCcCCCCCCcceecEEeeccCC--CCeeEEEeeCcEEEEEecCCcEEEEeCCCCCC
Q 001721 410 VMVGSSSSSNCSSGKLFTWGDGDRGRLGHGDKEARLVPTCVAALVE--PNFCQVSCGHSLTVALTTTGHVYTMGSPVYGQ 487 (1020)
Q Consensus 410 ~~~~~~~~~~~~~G~Ly~WG~n~~GQLG~g~~~~~~~Pt~V~~l~~--~~I~~Ia~G~~htlaLT~dG~Vy~wG~N~~GQ 487 (1020)
++++||+||.+-||+|||....+...|..+..+.- .--.++.||+..++++.+-|.||.||.+..
T Consensus 245 -----------~nkrVysWGFGGyGRLGHaEqKDEmvpRlik~Fd~~~rg~~~~~~g~t~Sl~v~e~G~Lf~~g~~k~-- 311 (443)
T KOG1427|consen 245 -----------KNKRVYSWGFGGYGRLGHAEQKDEMVPRLIKVFDRNNRGPPNAILGYTGSLNVAEGGQLFMWGKIKN-- 311 (443)
T ss_pred -----------CCccEEEeccccccccccccchhhHHHHHHHHhcCCCCCCcceeeecccceeecccceeEEeecccc--
Confidence 69999999999999999999999999998876532 345689999999999999999999997642
Q ss_pred CCCCCCCCCcceeeccccCCCcEEEEEecCcEEEEEeCCCeEEEEeCCCCCCCCCCC--CCCcccCceeecccccceEEE
Q 001721 488 LGDPKANGKLPTRVEGKLTKNFVEEIACGDYHVAVLTSRTEVYTWGKGANGRLGHGD--TDDRNFPSLVEALKDKQVKSI 565 (1020)
Q Consensus 488 LG~~~~~~~~P~~v~~~l~~~~I~~Ia~G~~HslaLTsdG~VytWG~n~~GQLG~G~--~~~~~~P~~V~~l~~~~V~~I 565 (1020)
...+..+|.++.+ +.+.++..+-||..|.++ ..|..+..||...+|.++-|. +.....|..|..+.+.+|..|
T Consensus 312 ---~ge~~mypkP~~d-lsgwnl~~~~~~~~h~~v-~ad~s~i~wg~~~~g~~lggp~~Qkss~~Pk~v~~l~~i~v~~V 386 (443)
T KOG1427|consen 312 ---NGEDWMYPKPMMD-LSGWNLRWMDSGSMHHFV-GADSSCISWGHAQYGELLGGPNGQKSSAAPKKVDMLEGIHVMGV 386 (443)
T ss_pred ---CcccccCCCchhh-cCCccCCCcCccceeeee-cccccccccccccccccccCccccccccCccccchhcceeccce
Confidence 3345567877774 778899999999999765 567789999998887766554 556678999999999999999
Q ss_pred EecCCcceeeeee
Q 001721 566 VCGTSFTAAICLH 578 (1020)
Q Consensus 566 acG~~~T~aL~~~ 578 (1020)
+||..||++|+..
T Consensus 387 amGysHs~vivd~ 399 (443)
T KOG1427|consen 387 AMGYSHSMVIVDR 399 (443)
T ss_pred eeccceEEEEEcc
Confidence 9999999999843
No 3
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton]
Probab=100.00 E-value=3.1e-39 Score=361.33 Aligned_cols=316 Identities=28% Similarity=0.516 Sum_probs=261.5
Q ss_pred CcEEEEEEcCCeEEEEeCCCCCccCCCCCCCC-CcceEeecc--CCCcEEEEEecCCEEEEEEeCCcEEEeCCCCCCCcc
Q 001721 242 GRHAALVTKQGEVFSWGEELGGRLGHGVDSDV-SHPKLIDAL--KNINVELVACGEHHTCAVTLSGDMYTWGGSNCNFGL 318 (1020)
Q Consensus 242 ~~hs~~Lt~dG~Vy~wG~N~~GqLG~g~~~~~-~~P~~V~~l--~~~~I~~VacG~~ht~aLT~dG~VysWG~n~~~~Gq 318 (1020)
..|..+++.-..||+||.|..++||.|.+... ..|++.... +...|++++||..|+++|++||+||+||.| ..|+
T Consensus 58 ~~~~~~~~~~~~v~~~Gsn~~~eLGlg~de~~~~~P~~~~~~~~d~~~i~~~acGg~hsl~ld~Dg~lyswG~N--~~G~ 135 (476)
T COG5184 58 NKHTHLLVKMASVYSWGSNGMNELGLGNDETKVDRPQLNPFGRIDKASIIKIACGGNHSLGLDHDGNLYSWGDN--DDGA 135 (476)
T ss_pred ccchhhhhheeeeEEEecCcceeeccCCchhcccCceecCcccccceeeEEeecCCceEEeecCCCCEEEeccC--cccc
Confidence 45666889999999999999999999987765 889988876 667899999999999999999999999999 8999
Q ss_pred cCCCCC----------------cceecceeeCC---CCCCCcEEEEEecCCeEEEEEcCCcEEEeccCCCCcCCCCCCcc
Q 001721 319 LGHGNE----------------MSLWLPKKLNG---PLEGIHVSSVSCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRIS 379 (1020)
Q Consensus 319 LG~g~~----------------~~~~~P~~I~~---~l~~~~Iv~VacG~~Hs~aLt~~G~Vy~wG~N~~GQLG~g~~~~ 379 (1020)
||.... .....|.+|.. .....+|++++||++++++|+++|.||.||....+.++.+....
T Consensus 136 Lgr~~~~~~~~~~~~~~~~~~~~~~~tP~~v~~~s~~~s~~~vv~l~cg~e~svil~~~G~V~~~gt~r~~e~~~g~~~~ 215 (476)
T COG5184 136 LGRDIHKDICDQNNDIIDFDDYELESTPFKVPGGSSAKSHLRVVKLACGWEISVILTADGRVYSWGTFRCGELGQGSYKN 215 (476)
T ss_pred cccccccccccccccccccchhhcccCCceeeccccccCChheEEeecCCceEEEEccCCcEEEecCccccccccccccc
Confidence 998661 13457888765 22245899999999999999999999999999888888874332
Q ss_pred c------ccceeeccCCCCeEEEEecCCceEEEEEEeeecCcccccCCCCcEEEecCCCCCCcCCCCCCcceecEEeecc
Q 001721 380 V------STPREVDSLKGLRTVRAACGVWHTAAVVEVMVGSSSSSNCSSGKLFTWGDGDRGRLGHGDKEARLVPTCVAAL 453 (1020)
Q Consensus 380 ~------~~P~~V~~l~~~~I~~IacG~~ht~aLtE~~~~~~~~~~~~~G~Ly~WG~n~~GQLG~g~~~~~~~Pt~V~~l 453 (1020)
. .+|..+. ...|+++++|..|.++++ ++|++|+||+|.+||||....+....+..+..+
T Consensus 216 s~k~~~~~~p~~v~---~~~i~qla~G~dh~i~lt------------~~G~vy~~Gs~qkgqlG~~~~e~~~~~~lv~~~ 280 (476)
T COG5184 216 SQKTSIQFTPLKVP---KKAIVQLAAGADHLIALT------------NEGKVYGWGSNQKGQLGRPTSERLKLVVLVGDP 280 (476)
T ss_pred cccceeeeeeeecC---chheeeeccCCceEEEEe------------cCCcEEEecCCcccccCCchhhhcccccccCCh
Confidence 2 3444443 457999999999999998 699999999999999999877766655555433
Q ss_pred C-CCCeeEEEeeCcEEEEEecCCcEEEEeCCCCCCCCCCCCCCCc------ceeeccccCCCcEEEEEecCcEEEEEeCC
Q 001721 454 V-EPNFCQVSCGHSLTVALTTTGHVYTMGSPVYGQLGDPKANGKL------PTRVEGKLTKNFVEEIACGDYHVAVLTSR 526 (1020)
Q Consensus 454 ~-~~~I~~Ia~G~~htlaLT~dG~Vy~wG~N~~GQLG~~~~~~~~------P~~v~~~l~~~~I~~Ia~G~~HslaLTsd 526 (1020)
. -..|+.|+||.+|++||+++|+||+||.|.+||||.+ .+... |.... .+.+..|..|++|..|.++|..+
T Consensus 281 f~i~~i~~vacG~~h~~al~~~G~i~a~G~n~fgqlg~~-~~~~~~a~~tk~~~~~-~~~~~~i~~is~ge~H~l~L~~~ 358 (476)
T COG5184 281 FAIRNIKYVACGKDHSLALDEDGEIYAWGVNIFGQLGAG-SDGEIGALTTKPNYKQ-LLSGVTICSISAGESHSLILRKD 358 (476)
T ss_pred hhhhhhhhcccCcceEEEEcCCCeEEEeccchhcccccC-cccccceeeccccccc-cCCCceEEEEecCcceEEEEecC
Confidence 2 2457899999999999999999999999999999998 44332 33222 34455699999999999999999
Q ss_pred CeEEEEeCCCCCCCCCCC--CCCcccCceeecccccceEEEEecCCcceeeeee
Q 001721 527 TEVYTWGKGANGRLGHGD--TDDRNFPSLVEALKDKQVKSIVCGTSFTAAICLH 578 (1020)
Q Consensus 527 G~VytWG~n~~GQLG~G~--~~~~~~P~~V~~l~~~~V~~IacG~~~T~aL~~~ 578 (1020)
|.||+||++..||||+.+ +.+...|+.+... .++.+|+||..|+++.+..
T Consensus 359 G~l~a~Gr~~~~qlg~~~~~~~~~~~~~~ls~~--~~~~~v~~gt~~~~~~t~~ 410 (476)
T COG5184 359 GTLYAFGRGDRGQLGIQEEITIDVSTPTKLSVA--IKLEQVACGTHHNIARTDD 410 (476)
T ss_pred ceEEEecCCccccccCcccceeecCCccccccc--cceEEEEecCccceeeccC
Confidence 999999999999999998 6666667666543 3699999999999998854
No 4
>KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown]
Probab=100.00 E-value=3.7e-36 Score=316.03 Aligned_cols=311 Identities=26% Similarity=0.434 Sum_probs=260.0
Q ss_pred cccccCCCCcEEEEcCCCCCCccCCCCCcCCccccccccccceEEecccCCCCEEEEEecCcEEEEEEcCCeEEEEeCCC
Q 001721 182 GHDDGDSLGDVFIWGECTGDGILGGGIHRSGSYAGVKMDSFVPKAVESAVVLDVQNIACGGRHAALVTKQGEVFSWGEEL 261 (1020)
Q Consensus 182 ~~~~lds~G~Vy~WG~n~~~GqLG~g~~~~~~~~~~~~~~~~P~~v~~~~~~~I~~Ia~G~~hs~~Lt~dG~Vy~wG~N~ 261 (1020)
|...||-+|..|.||.|. .||||+|+. .....|+.|+.+...+|++.+||++|+++||++|+||+||.|.
T Consensus 69 H~vli~megk~~~wGRNe-kGQLGhgD~---------k~~e~Ptvi~gL~~~~iv~AA~GrnHTl~ltdtG~v~afGeNK 138 (443)
T KOG1427|consen 69 HCVLIDMEGKCYTWGRNE-KGQLGHGDM---------KQRERPTVISGLSKHKIVKAAAGRNHTLVLTDTGQVLAFGENK 138 (443)
T ss_pred hEEEEecccceeecccCc-cCccCccch---------hhccCCchhhhhhhhhHHHHhhccCcEEEEecCCcEEEecccc
Confidence 556889999999999999 999999975 5667899999999999999999999999999999999999999
Q ss_pred CCccCCCCCCC-CCcceEeeccCCCcEEEEEecCCEEEEEEeCCcEEEeCCCCCCCcccCCCCCcc--------------
Q 001721 262 GGRLGHGVDSD-VSHPKLIDALKNINVELVACGEHHTCAVTLSGDMYTWGGSNCNFGLLGHGNEMS-------------- 326 (1020)
Q Consensus 262 ~GqLG~g~~~~-~~~P~~V~~l~~~~I~~VacG~~ht~aLT~dG~VysWG~n~~~~GqLG~g~~~~-------------- 326 (1020)
+||||++.... +..|.++. .....|..|+||..+++.|+..+.|.++|.- .|||||++++..
T Consensus 139 ~GQlGlgn~~~~v~s~~~~~-~~~~~v~~v~cga~ftv~l~~~~si~t~glp--~ygqlgh~td~~~~~~~~~~~~~~e~ 215 (443)
T KOG1427|consen 139 YGQLGLGNAKNEVESTPLPC-VVSDEVTNVACGADFTVWLSSTESILTAGLP--QYGQLGHGTDNEFNMKDSSVRLAYEA 215 (443)
T ss_pred cccccccccccccccCCCcc-ccCccceeeccccceEEEeecccceeecCCc--cccccccCcchhhccccccceeeeec
Confidence 99999998664 33443333 3446899999999999999999999999999 899999998643
Q ss_pred eecceeeCCCCCCCcEEEEEecCCeEEEEEcCCcEEEeccCCCCcCCCCCCcccccceeeccC--CCCeEEEEecCCceE
Q 001721 327 LWLPKKLNGPLEGIHVSSVSCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRISVSTPREVDSL--KGLRTVRAACGVWHT 404 (1020)
Q Consensus 327 ~~~P~~I~~~l~~~~Iv~VacG~~Hs~aLt~~G~Vy~wG~N~~GQLG~g~~~~~~~P~~V~~l--~~~~I~~IacG~~ht 404 (1020)
+..|..|. ++++++|++++||.+|+++++++++||+||.+-||.|||........|+.++.+ .+.--..+.||+..+
T Consensus 216 ~pr~~~i~-~~dgvqiv~~acg~nhtvavd~nkrVysWGFGGyGRLGHaEqKDEmvpRlik~Fd~~~rg~~~~~~g~t~S 294 (443)
T KOG1427|consen 216 QPRPKAIA-SLDGVQIVKVACGTNHTVAVDKNKRVYSWGFGGYGRLGHAEQKDEMVPRLIKVFDRNNRGPPNAILGYTGS 294 (443)
T ss_pred CCCccccc-cccceeeEEEeccCcceeeecCCccEEEeccccccccccccchhhHHHHHHHHhcCCCCCCcceeeecccc
Confidence 12344443 478899999999999999999999999999999999999999999999988755 344467788999999
Q ss_pred EEEEEeeecCcccccCCCCcEEEecCCCCCCcCCCCCCcceecEEeeccCCCCeeEEEeeCcEEEEEecCCcEEEEeCCC
Q 001721 405 AAVVEVMVGSSSSSNCSSGKLFTWGDGDRGRLGHGDKEARLVPTCVAALVEPNFCQVSCGHSLTVALTTTGHVYTMGSPV 484 (1020)
Q Consensus 405 ~aLtE~~~~~~~~~~~~~G~Ly~WG~n~~GQLG~g~~~~~~~Pt~V~~l~~~~I~~Ia~G~~htlaLT~dG~Vy~wG~N~ 484 (1020)
+++.| -|.||.||.+.. ..+....|..+..+.+-++..+-||..|.+ +..|..+..||...
T Consensus 295 l~v~e------------~G~Lf~~g~~k~------~ge~~mypkP~~dlsgwnl~~~~~~~~h~~-v~ad~s~i~wg~~~ 355 (443)
T KOG1427|consen 295 LNVAE------------GGQLFMWGKIKN------NGEDWMYPKPMMDLSGWNLRWMDSGSMHHF-VGADSSCISWGHAQ 355 (443)
T ss_pred eeecc------------cceeEEeecccc------CcccccCCCchhhcCCccCCCcCccceeee-eccccccccccccc
Confidence 99975 899999998764 235566788888888899999999988865 55667899999988
Q ss_pred CCCCCC-CCCC--CCcceeeccccCCCcEEEEEecCcEEEEEeCC
Q 001721 485 YGQLGD-PKAN--GKLPTRVEGKLTKNFVEEIACGDYHVAVLTSR 526 (1020)
Q Consensus 485 ~GQLG~-~~~~--~~~P~~v~~~l~~~~I~~Ia~G~~HslaLTsd 526 (1020)
+|.++- ++.. ...|..+. .+.+..|.+|+||..|+++|..+
T Consensus 356 ~g~~lggp~~Qkss~~Pk~v~-~l~~i~v~~VamGysHs~vivd~ 399 (443)
T KOG1427|consen 356 YGELLGGPNGQKSSAAPKKVD-MLEGIHVMGVAMGYSHSMVIVDR 399 (443)
T ss_pred ccccccCccccccccCccccc-hhcceeccceeeccceEEEEEcc
Confidence 876654 3333 34676666 46778899999999999999755
No 5
>PF08381 BRX: Transcription factor regulating root and shoot growth via Pin3; InterPro: IPR013591 This is a short domain, approximately 35 residues in length that is found near the C terminus in a number of plant proteins, being repeated in some members. It is found in Brevis radix-like proteins. These may act as a regulator of cell proliferation and elongation in the root []. It is also found in proteins annotated as involved in disease resistance and in the regulation of chromosome condensation, which also contain other domains with varied functions, such as TIR (IPR000157 from INTERPRO) and FYVE (IPR000306 from INTERPRO) respectively.
Probab=99.97 E-value=2.3e-31 Score=217.97 Aligned_cols=59 Identities=69% Similarity=1.207 Sum_probs=57.4
Q ss_pred CCCCceeeeecceeEEEEEEcCCCccceeEEEeeccccCHHHHHHHHHHhhhhhhhhhc
Q 001721 944 AQGDEWVEQDETGVYITLVALPGGLKDLKRVRFSRKKFSEKQAEQWWAANRARVYQQYN 1002 (1020)
Q Consensus 944 ~~~~~~~~~~e~gv~~t~~~~~~g~~~~~rvrf~~~~f~~~~a~~ww~~n~~~~~~~y~ 1002 (1020)
+++.|||||+||||||||+++|||+++||||||||++|+|+||+.||+||++|||++||
T Consensus 1 q~~~Ewveq~EpGVyiTl~~~p~G~~~LkRVRFSR~~F~e~qA~~WW~eN~~rv~e~Yn 59 (59)
T PF08381_consen 1 QEEKEWVEQDEPGVYITLVSLPDGGNDLKRVRFSRERFSEWQAERWWEENRDRVYEKYN 59 (59)
T ss_pred CCCccEEEeeCCeeEEEEEECCCCCeeEEEEEEhhhhcCHHHHHHHHHHHHHHHHHhcC
Confidence 46789999999999999999999999999999999999999999999999999999997
No 6
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=99.93 E-value=9.4e-26 Score=261.21 Aligned_cols=305 Identities=22% Similarity=0.308 Sum_probs=230.8
Q ss_pred cccCCCCcEEEEcCCCCCCccCCCCCcCCccccccccccceEEeccc--CCCCEEEEEecCcEEEEEEcCCeEEEEeCCC
Q 001721 184 DDGDSLGDVFIWGECTGDGILGGGIHRSGSYAGVKMDSFVPKAVESA--VVLDVQNIACGGRHAALVTKQGEVFSWGEEL 261 (1020)
Q Consensus 184 ~~lds~G~Vy~WG~n~~~GqLG~g~~~~~~~~~~~~~~~~P~~v~~~--~~~~I~~Ia~G~~hs~~Lt~dG~Vy~wG~N~ 261 (1020)
-++|...|||+||.|. +..||+|.. .....|..|..+ .++-+.+|+.+..|++++++.|+||++|.+.
T Consensus 136 ~~~d~pndvy~wG~N~-N~tLGign~---------~~~~~Pe~Vdlf~~Sg~~~~qV~l~kfHSvfl~~kgqvY~cGhG~ 205 (1267)
T KOG0783|consen 136 PVLDLPNDVYGWGTNV-NNTLGIGNG---------KEPSSPERVDLFKTSGQLFSQVQLSKFHSVFLTEKGQVYVCGHGA 205 (1267)
T ss_pred cccCCccceeEecccc-cccccccCC---------CCCCChHHhHHHHhccHHHHHHHHhhceeeEecCCCcEEEeccCC
Confidence 3578889999999999 999999986 344567666544 3455788999999999999999999999999
Q ss_pred CCccCCCCCCCCCcceEeeccCCCcEEEEEecCCEEEEEEeCCcEEEeCCCCCCCcccCCCCCcc-eecceeeCCC-CCC
Q 001721 262 GGRLGHGVDSDVSHPKLIDALKNINVELVACGEHHTCAVTLSGDMYTWGGSNCNFGLLGHGNEMS-LWLPKKLNGP-LEG 339 (1020)
Q Consensus 262 ~GqLG~g~~~~~~~P~~V~~l~~~~I~~VacG~~ht~aLT~dG~VysWG~n~~~~GqLG~g~~~~-~~~P~~I~~~-l~~ 339 (1020)
+|+||+|+......|++|+.|.+.+|.+|+....|+++||++|-||+||.| ..+|||..+... ...|..|... +.+
T Consensus 206 GGRlG~gdeq~~~iPkrV~gL~gh~~~qisvs~~HslvLT~~g~Vys~GlN--~~hqLG~~~~~~~~~~p~qI~a~r~kg 283 (1267)
T KOG0783|consen 206 GGRLGFGDEQYNFIPKRVPGLIGHKVIQISVSHTHSLVLTKFGSVYSWGLN--GSHQLGLSNDELKKDDPIQITARRIKG 283 (1267)
T ss_pred CCccCcCcccccccccccccccccceEEEEeecceeEEEeecceEEEeecC--cccccCCcCchhhcCchhhhhhHhhcc
Confidence 999999999999999999999999999999999999999999999999999 899999987643 2234444211 122
Q ss_pred -CcEEEEEecCCeEEEEEcCCcEEEeccCCCCcCCCCCCc-ccccceeeccCCCCeEEEEecCCceEEEEEEeeecCccc
Q 001721 340 -IHVSSVSCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRI-SVSTPREVDSLKGLRTVRAACGVWHTAAVVEVMVGSSSS 417 (1020)
Q Consensus 340 -~~Iv~VacG~~Hs~aLt~~G~Vy~wG~N~~GQLG~g~~~-~~~~P~~V~~l~~~~I~~IacG~~ht~aLtE~~~~~~~~ 417 (1020)
..|+-|++|..|+++.|+. .||+||.| .||||..+.. .+.+|+.+..+ ...|..|+|....|+++++
T Consensus 284 ~~~iIgvaAg~~hsVawt~~-~VY~wGlN-~GQlGi~~n~~~Vt~Pr~l~~~-~~~v~~v~a~~~ATVc~~~-------- 352 (1267)
T KOG0783|consen 284 FKQIIGVAAGKSHSVAWTDT-DVYSWGLN-NGQLGISDNISVVTTPRRLAGL-LSPVIHVVATTRATVCLLQ-------- 352 (1267)
T ss_pred hhhhhhhhcccceeeeeecc-eEEEeccc-CceecCCCCCceeecchhhccc-ccceEEEEecCccEEEEec--------
Confidence 3799999999999999977 69999998 6999987654 46678766433 3478999999999999984
Q ss_pred ccCCCCcEEEecCCCCCCcCCCCCCcceecEEeec----cCCCCeeEEEeeCcEEEEEecCCcEEEEeCCCCCCCCCCCC
Q 001721 418 SNCSSGKLFTWGDGDRGRLGHGDKEARLVPTCVAA----LVEPNFCQVSCGHSLTVALTTTGHVYTMGSPVYGQLGDPKA 493 (1020)
Q Consensus 418 ~~~~~G~Ly~WG~n~~GQLG~g~~~~~~~Pt~V~~----l~~~~I~~Ia~G~~htlaLT~dG~Vy~wG~N~~GQLG~~~~ 493 (1020)
++.+|++-+-. |.-...+.....-..|.. +.-.++.+..+...--++||+-|.||.|-++..-.- .
T Consensus 353 ----~~~i~~~ady~--~~k~~~n~~~lks~~V~gg~l~~~~~~~~k~~a~~~kll~lte~g~Vy~w~s~ns~~~----~ 422 (1267)
T KOG0783|consen 353 ----NNSIIAFADYN--QVKLPFNVDFLKSLKVTGGPLSLTRFNVRKLLASENKLLVLTELGEVYEWDSKNSTRT----S 422 (1267)
T ss_pred ----CCcEEEEeccc--ceecCcchhccceeEEecCccchhhhhhhhcchhhhheeeeccCCeEEEEecCCCcee----e
Confidence 88888886532 222222222222222221 111345566667777889999999999986543110 0
Q ss_pred CCCcceeeccccCCCcEEEEEecCcEEEEEeCCC
Q 001721 494 NGKLPTRVEGKLTKNFVEEIACGDYHVAVLTSRT 527 (1020)
Q Consensus 494 ~~~~P~~v~~~l~~~~I~~Ia~G~~HslaLTsdG 527 (1020)
-...|..+ ..|.+|+--.+..+++|.||
T Consensus 423 c~ftp~r~------~~isdIa~~~N~~~~~t~dG 450 (1267)
T KOG0783|consen 423 CKFTPLRI------FEISDIAWTANSLILCTRDG 450 (1267)
T ss_pred eeccccee------eehhhhhhccceEEEEecCc
Confidence 11123222 34678888889999999999
No 7
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=99.93 E-value=1.8e-25 Score=258.97 Aligned_cols=300 Identities=24% Similarity=0.387 Sum_probs=229.6
Q ss_pred EEEcCCeEEEEeCCCCCccCCCCCCCCCcceEeeccC--CCcEEEEEecCCEEEEEEeCCcEEEeCCCCCCCcccCCCCC
Q 001721 247 LVTKQGEVFSWGEELGGRLGHGVDSDVSHPKLIDALK--NINVELVACGEHHTCAVTLSGDMYTWGGSNCNFGLLGHGNE 324 (1020)
Q Consensus 247 ~Lt~dG~Vy~wG~N~~GqLG~g~~~~~~~P~~V~~l~--~~~I~~VacG~~ht~aLT~dG~VysWG~n~~~~GqLG~g~~ 324 (1020)
+++...+||+||.|.+..||+|.......|..|..+. +.-+.+|+.+.+|+++|++.|+||++|.+ ..|.||+|..
T Consensus 137 ~~d~pndvy~wG~N~N~tLGign~~~~~~Pe~Vdlf~~Sg~~~~qV~l~kfHSvfl~~kgqvY~cGhG--~GGRlG~gde 214 (1267)
T KOG0783|consen 137 VLDLPNDVYGWGTNVNNTLGIGNGKEPSSPERVDLFKTSGQLFSQVQLSKFHSVFLTEKGQVYVCGHG--AGGRLGFGDE 214 (1267)
T ss_pred ccCCccceeEecccccccccccCCCCCCChHHhHHHHhccHHHHHHHHhhceeeEecCCCcEEEeccC--CCCccCcCcc
Confidence 4666799999999999999999999999999999875 44578899999999999999999999999 7899999999
Q ss_pred cceecceeeCCCCCCCcEEEEEecCCeEEEEEcCCcEEEeccCCCCcCCCCCCc-ccccceeeccC--CCC-eEEEEecC
Q 001721 325 MSLWLPKKLNGPLEGIHVSSVSCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRI-SVSTPREVDSL--KGL-RTVRAACG 400 (1020)
Q Consensus 325 ~~~~~P~~I~~~l~~~~Iv~VacG~~Hs~aLt~~G~Vy~wG~N~~GQLG~g~~~-~~~~P~~V~~l--~~~-~I~~IacG 400 (1020)
...+.|++|++ +.+.+|.+|+....|+++||.+|-||+||.|.++|||..+.. ....|++|... ++. .|+.|++|
T Consensus 215 q~~~iPkrV~g-L~gh~~~qisvs~~HslvLT~~g~Vys~GlN~~hqLG~~~~~~~~~~p~qI~a~r~kg~~~iIgvaAg 293 (1267)
T KOG0783|consen 215 QYNFIPKRVPG-LIGHKVIQISVSHTHSLVLTKFGSVYSWGLNGSHQLGLSNDELKKDDPIQITARRIKGFKQIIGVAAG 293 (1267)
T ss_pred ccccccccccc-ccccceEEEEeecceeEEEeecceEEEeecCcccccCCcCchhhcCchhhhhhHhhcchhhhhhhhcc
Confidence 89999999998 778899999999999999999999999999999999987544 45566666532 333 69999999
Q ss_pred CceEEEEEEeeecCcccccCCCCcEEEecCCCCCCcCCCCCCc-ceecEEeeccCCCCeeEEEeeCcEEEEEecCCcEEE
Q 001721 401 VWHTAAVVEVMVGSSSSSNCSSGKLFTWGDGDRGRLGHGDKEA-RLVPTCVAALVEPNFCQVSCGHSLTVALTTTGHVYT 479 (1020)
Q Consensus 401 ~~ht~aLtE~~~~~~~~~~~~~G~Ly~WG~n~~GQLG~g~~~~-~~~Pt~V~~l~~~~I~~Ia~G~~htlaLT~dG~Vy~ 479 (1020)
..|+++.+ +..||+||.|. ||||..+... ...|..+.. ....|..|+|....|++++++|.+|+
T Consensus 294 ~~hsVawt-------------~~~VY~wGlN~-GQlGi~~n~~~Vt~Pr~l~~-~~~~v~~v~a~~~ATVc~~~~~~i~~ 358 (1267)
T KOG0783|consen 294 KSHSVAWT-------------DTDVYSWGLNN-GQLGISDNISVVTTPRRLAG-LLSPVIHVVATTRATVCLLQNNSIIA 358 (1267)
T ss_pred cceeeeee-------------cceEEEecccC-ceecCCCCCceeecchhhcc-cccceEEEEecCccEEEEecCCcEEE
Confidence 99999997 88999999975 9999887644 456755532 34689999999999999999999999
Q ss_pred EeCCCCCCCCCCCCCC-Ccceeec-ccc--CCCcEEEEEecCcEEEEEeCCCeEEEEeCCCCCCCCCCCCCCcccCceee
Q 001721 480 MGSPVYGQLGDPKANG-KLPTRVE-GKL--TKNFVEEIACGDYHVAVLTSRTEVYTWGKGANGRLGHGDTDDRNFPSLVE 555 (1020)
Q Consensus 480 wG~N~~GQLG~~~~~~-~~P~~v~-~~l--~~~~I~~Ia~G~~HslaLTsdG~VytWG~n~~GQLG~G~~~~~~~P~~V~ 555 (1020)
+-+- .|.-.+.... ..-..|. +.+ ....+.+..+...-.++||+-|+||.|-.+..-. +.-...|.++-
T Consensus 359 ~ady--~~~k~~~n~~~lks~~V~gg~l~~~~~~~~k~~a~~~kll~lte~g~Vy~w~s~ns~~-----~~c~ftp~r~~ 431 (1267)
T KOG0783|consen 359 FADY--NQVKLPFNVDFLKSLKVTGGPLSLTRFNVRKLLASENKLLVLTELGEVYEWDSKNSTR-----TSCKFTPLRIF 431 (1267)
T ss_pred Eecc--cceecCcchhccceeEEecCccchhhhhhhhcchhhhheeeeccCCeEEEEecCCCce-----eeeecccceee
Confidence 8753 3332222111 1111222 122 1234666777777889999999999998653211 11122333332
Q ss_pred cccccceEEEEecCCcceeee
Q 001721 556 ALKDKQVKSIVCGTSFTAAIC 576 (1020)
Q Consensus 556 ~l~~~~V~~IacG~~~T~aL~ 576 (1020)
.|.+|+--.+.-++++
T Consensus 432 -----~isdIa~~~N~~~~~t 447 (1267)
T KOG0783|consen 432 -----EISDIAWTANSLILCT 447 (1267)
T ss_pred -----ehhhhhhccceEEEEe
Confidence 3556666655544444
No 8
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=99.85 E-value=7.2e-20 Score=217.74 Aligned_cols=343 Identities=23% Similarity=0.324 Sum_probs=217.5
Q ss_pred CCCCcEEEEcCCCCCCccCCCCCcCCccccccccccceEEecccCCCCEEEEEecCcEEEEEE--cCCeEEEEeCCC-CC
Q 001721 187 DSLGDVFIWGECTGDGILGGGIHRSGSYAGVKMDSFVPKAVESAVVLDVQNIACGGRHAALVT--KQGEVFSWGEEL-GG 263 (1020)
Q Consensus 187 ds~G~Vy~WG~n~~~GqLG~g~~~~~~~~~~~~~~~~P~~v~~~~~~~I~~Ia~G~~hs~~Lt--~dG~Vy~wG~N~-~G 263 (1020)
+.+|+||.-|.....|..-.|. . +....+ ..+|++|+.|-+...++. .+|-++.-|... .|
T Consensus 495 a~sGKvYYaGn~t~~Gl~e~G~----------n--WmEL~l----~~~IVq~SVG~D~~~~~~~A~~G~I~~v~D~k~~~ 558 (3738)
T KOG1428|consen 495 ARSGKVYYAGNGTRFGLFETGN----------N--WMELCL----PEPIVQISVGIDTIMFRSGAGHGWIASVDDKKRNG 558 (3738)
T ss_pred hcCccEEEecCccEEeEEccCC----------c--eEEecC----CCceEEEEeccchhheeeccCcceEEeccCccccc
Confidence 6789999999977333333332 1 111111 247899999977666554 566666666322 11
Q ss_pred ccCCCCCCCCCcceEeeccCCCcEEEEEecCCEEEEEEeCCcEEEeCCCCCCCcccCCCCCcceecceeeCCCCCCCcEE
Q 001721 264 RLGHGVDSDVSHPKLIDALKNINVELVACGEHHTCAVTLSGDMYTWGGSNCNFGLLGHGNEMSLWLPKKLNGPLEGIHVS 343 (1020)
Q Consensus 264 qLG~g~~~~~~~P~~V~~l~~~~I~~VacG~~ht~aLT~dG~VysWG~n~~~~GqLG~g~~~~~~~P~~I~~~l~~~~Iv 343 (1020)
.| +++......+|+.|.+...---.+.++|++|..|... .....-..+...+++.-|.
T Consensus 559 ~~-----------Rr~~P~n~rKIv~v~~s~~VY~~vSenGkifM~G~~t-----------m~~n~SSqmln~L~~~~is 616 (3738)
T KOG1428|consen 559 RL-----------RRLVPSNRRKIVHVCASGHVYGYVSENGKIFMGGLHT-----------MRVNVSSQMLNGLDNVMIS 616 (3738)
T ss_pred ch-----------hhcCCCCcceeEEEeeeeEEEEEEccCCeEEeeccee-----------EEecchHHHhhccccceee
Confidence 11 1222222346777755544446789999999998651 0110111222337788899
Q ss_pred EEEecCCeEEEEEcCCcEEEeccCCCCcCCCCCCcc-cccceee-------------ccCCCCeEEEEecCCceEEEEEE
Q 001721 344 SVSCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRIS-VSTPREV-------------DSLKGLRTVRAACGVWHTAAVVE 409 (1020)
Q Consensus 344 ~VacG~~Hs~aLt~~G~Vy~wG~N~~GQLG~g~~~~-~~~P~~V-------------~~l~~~~I~~IacG~~ht~aLtE 409 (1020)
+++.|..|+++++.+|.||+||-|..+|+|.-.... ...|..- ..+.+...+...||.-...-+.
T Consensus 617 slAlGKsH~~av~rNG~l~T~GlNN~~QCGRVEs~sTt~s~~~s~~~e~~iCP~G~HtW~~dt~~VCa~CG~Cs~~Gva- 695 (3738)
T KOG1428|consen 617 SLALGKSHGVAVTRNGHLFTWGLNNMNQCGRVESTSTTSSPRHSGRQEYQICPIGEHTWLTDTPSVCAQCGLCSARGVA- 695 (3738)
T ss_pred hhhccccceeEEEeCCeEEEEecCCcccccccccccccCCcccccceeecccCCccceeecCCcchhhhcccccccccc-
Confidence 999999999999999999999999999999743221 1222211 1122223333444433222221
Q ss_pred eeecCcccccCCCCcEEEecCCCCCCcCCC--------C-------------------CCcceecEEeec---cCCCCee
Q 001721 410 VMVGSSSSSNCSSGKLFTWGDGDRGRLGHG--------D-------------------KEARLVPTCVAA---LVEPNFC 459 (1020)
Q Consensus 410 ~~~~~~~~~~~~~G~Ly~WG~n~~GQLG~g--------~-------------------~~~~~~Pt~V~~---l~~~~I~ 459 (1020)
+...--..|.+-.+|.+..+.|--| . ....+.|..|.. .-+.++.
T Consensus 696 -----C~~~~RP~G~mC~CG~GES~C~~CG~Cr~C~e~tE~~QPG~aqHvQ~~staa~QR~~~HPs~V~~sq~~Hdvkv~ 770 (3738)
T KOG1428|consen 696 -----CGRVPRPKGTMCHCGVGESTCLRCGLCRPCGEVTEPAQPGRAQHVQFSSTAAPQRSTLHPSRVILSQGPHDVKVS 770 (3738)
T ss_pred -----cccCCCCCCcccccCCCcccceeccccccccCcCCcCCCCHHHhheecccccccccccCchheeeccCCcceeEE
Confidence 0111223566777776665543211 0 011123444432 2345789
Q ss_pred EEEeeCcEEEEEecCCcEEEEeCCCCCCCCCCCCCC-CcceeeccccCCCcEEEEEecCcEEEEEeCCCeEEEEeCCCCC
Q 001721 460 QVSCGHSLTVALTTTGHVYTMGSPVYGQLGDPKANG-KLPTRVEGKLTKNFVEEIACGDYHVAVLTSRTEVYTWGKGANG 538 (1020)
Q Consensus 460 ~Ia~G~~htlaLT~dG~Vy~wG~N~~GQLG~~~~~~-~~P~~v~~~l~~~~I~~Ia~G~~HslaLTsdG~VytWG~n~~G 538 (1020)
+|+||..|+++|.+|++||+||+|.+||||.|+... ..|+.|. .+.+..|++|++|.+|++++..||+||+||.=..|
T Consensus 771 sVSCG~~HtVlL~sd~~VfTFG~~~HGQLG~GDt~Sk~~Pq~V~-~~~~t~~vQVaAGSNHT~l~~~DGsVFTFGaF~KG 849 (3738)
T KOG1428|consen 771 SVSCGNFHTVLLASDRRVFTFGSNCHGQLGVGDTLSKNTPQQVI-LPSDTVIVQVAAGSNHTILRANDGSVFTFGAFGKG 849 (3738)
T ss_pred EEeccCceEEEEecCCcEEEecCCcccccCcCccccCCCcceEE-cCCCCceEEEecCCCceEEEecCCcEEEeccccCc
Confidence 999999999999999999999999999999998654 4788887 36677899999999999999999999999999999
Q ss_pred CCCCCC--CCCc-ccCceeeccc---ccceEEEEecCCccee
Q 001721 539 RLGHGD--TDDR-NFPSLVEALK---DKQVKSIVCGTSFTAA 574 (1020)
Q Consensus 539 QLG~G~--~~~~-~~P~~V~~l~---~~~V~~IacG~~~T~a 574 (1020)
|||..- ..-. ..|.+|..+. +.....|-+.++.+++
T Consensus 850 QL~RP~~e~~~WNA~Pe~v~~~G~~f~~~A~WIGAdGDss~i 891 (3738)
T KOG1428|consen 850 QLARPAGEKAGWNAIPEKVSGFGPGFNAFAGWIGADGDSSII 891 (3738)
T ss_pred cccCccccccccccCCCcCCCCCccccccceeeccCCCccee
Confidence 999653 2222 3577776553 3344556555554443
No 9
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=99.82 E-value=3.1e-19 Score=212.49 Aligned_cols=250 Identities=25% Similarity=0.408 Sum_probs=175.0
Q ss_pred CCCEEEEEecCcEEEEEEcCCeEEEEeCCCCCccCCCCCCCCCcceEeeccCCCcEEEEEecCCEEEEEEeCCcEEEeCC
Q 001721 232 VLDVQNIACGGRHAALVTKQGEVFSWGEELGGRLGHGVDSDVSHPKLIDALKNINVELVACGEHHTCAVTLSGDMYTWGG 311 (1020)
Q Consensus 232 ~~~I~~Ia~G~~hs~~Lt~dG~Vy~wG~N~~GqLG~g~~~~~~~P~~V~~l~~~~I~~VacG~~ht~aLT~dG~VysWG~ 311 (1020)
..+|++|.+...-.-++.++|++|..|...- .....-.++..|++.-|.+++.|..|+++|+.+|+||+||-
T Consensus 568 ~rKIv~v~~s~~VY~~vSenGkifM~G~~tm--------~~n~SSqmln~L~~~~isslAlGKsH~~av~rNG~l~T~Gl 639 (3738)
T KOG1428|consen 568 RRKIVHVCASGHVYGYVSENGKIFMGGLHTM--------RVNVSSQMLNGLDNVMISSLALGKSHGVAVTRNGHLFTWGL 639 (3738)
T ss_pred cceeEEEeeeeEEEEEEccCCeEEeecceeE--------EecchHHHhhccccceeehhhccccceeEEEeCCeEEEEec
Confidence 4567777544444457899999999995321 01123356677888999999999999999999999999999
Q ss_pred CCCCCcccCCCCCccee-cce------------eeCCCCCCCcEEEEEecCCeEE---EE---EcCCcEEEeccCCCCcC
Q 001721 312 SNCNFGLLGHGNEMSLW-LPK------------KLNGPLEGIHVSSVSCGPWHTA---VV---TSAGQLFTFGDGTFGVL 372 (1020)
Q Consensus 312 n~~~~GqLG~g~~~~~~-~P~------------~I~~~l~~~~Iv~VacG~~Hs~---aL---t~~G~Vy~wG~N~~GQL 372 (1020)
| +.+|+|.-...... .|. -....+.+...+-..||.-..- +. --.|.+-.+|.+..+.+
T Consensus 640 N--N~~QCGRVEs~sTt~s~~~s~~~e~~iCP~G~HtW~~dt~~VCa~CG~Cs~~GvaC~~~~RP~G~mC~CG~GES~C~ 717 (3738)
T KOG1428|consen 640 N--NMNQCGRVESTSTTSSPRHSGRQEYQICPIGEHTWLTDTPSVCAQCGLCSARGVACGRVPRPKGTMCHCGVGESTCL 717 (3738)
T ss_pred C--CcccccccccccccCCcccccceeecccCCccceeecCCcchhhhcccccccccccccCCCCCCcccccCCCcccce
Confidence 9 89999975433211 111 0000011112222233332111 11 12356666666655443
Q ss_pred CCC--------CC-------------------cccccceeec---cCCCCeEEEEecCCceEEEEEEeeecCcccccCCC
Q 001721 373 GHG--------DR-------------------ISVSTPREVD---SLKGLRTVRAACGVWHTAAVVEVMVGSSSSSNCSS 422 (1020)
Q Consensus 373 G~g--------~~-------------------~~~~~P~~V~---~l~~~~I~~IacG~~ht~aLtE~~~~~~~~~~~~~ 422 (1020)
-.| .. ....-|..|. ..-+.++.+|+||.+|+++|. ++
T Consensus 718 ~CG~Cr~C~e~tE~~QPG~aqHvQ~~staa~QR~~~HPs~V~~sq~~Hdvkv~sVSCG~~HtVlL~------------sd 785 (3738)
T KOG1428|consen 718 RCGLCRPCGEVTEPAQPGRAQHVQFSSTAAPQRSTLHPSRVILSQGPHDVKVSSVSCGNFHTVLLA------------SD 785 (3738)
T ss_pred eccccccccCcCCcCCCCHHHhheecccccccccccCchheeeccCCcceeEEEEeccCceEEEEe------------cC
Confidence 211 00 0112233332 223468999999999999998 59
Q ss_pred CcEEEecCCCCCCcCCCCCCcceecEEeeccCCCCeeEEEeeCcEEEEEecCCcEEEEeCCCCCCCCCCCCCCC----cc
Q 001721 423 GKLFTWGDGDRGRLGHGDKEARLVPTCVAALVEPNFCQVSCGHSLTVALTTTGHVYTMGSPVYGQLGDPKANGK----LP 498 (1020)
Q Consensus 423 G~Ly~WG~n~~GQLG~g~~~~~~~Pt~V~~l~~~~I~~Ia~G~~htlaLT~dG~Vy~wG~N~~GQLG~~~~~~~----~P 498 (1020)
++||++|.|.+||||+|+...+..|++|..+.+..|++|++|.+||+++..||.||+||.-..|||+.+.-+.. .|
T Consensus 786 ~~VfTFG~~~HGQLG~GDt~Sk~~Pq~V~~~~~t~~vQVaAGSNHT~l~~~DGsVFTFGaF~KGQL~RP~~e~~~WNA~P 865 (3738)
T KOG1428|consen 786 RRVFTFGSNCHGQLGVGDTLSKNTPQQVILPSDTVIVQVAAGSNHTILRANDGSVFTFGAFGKGQLARPAGEKAGWNAIP 865 (3738)
T ss_pred CcEEEecCCcccccCcCccccCCCcceEEcCCCCceEEEecCCCceEEEecCCcEEEeccccCccccCccccccccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999998765432 45
Q ss_pred eeecc
Q 001721 499 TRVEG 503 (1020)
Q Consensus 499 ~~v~~ 503 (1020)
.++.+
T Consensus 866 e~v~~ 870 (3738)
T KOG1428|consen 866 EKVSG 870 (3738)
T ss_pred CcCCC
Confidence 55554
No 10
>PF13713 BRX_N: Transcription factor BRX N-terminal domain
Probab=99.32 E-value=5.4e-13 Score=101.30 Aligned_cols=32 Identities=75% Similarity=0.943 Sum_probs=29.7
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHhhhCCCcc
Q 001721 833 GEETAKCRAAKDVIKSLTAQLKDMAEMLPVGA 864 (1020)
Q Consensus 833 ~eE~~k~~aake~iksl~~qlk~~~e~lp~~~ 864 (1020)
+|||+|||||||||||||+|||||+||||++.
T Consensus 1 ~eEaak~kaaKe~IKsLt~QlK~maekl~~~~ 32 (39)
T PF13713_consen 1 AEEAAKCKAAKEVIKSLTAQLKDMAEKLPGAY 32 (39)
T ss_pred CccccccHHHHHHHHHHHHHHHHHHHhCchhh
Confidence 48999999999999999999999999998653
No 11
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=99.15 E-value=9.5e-12 Score=108.96 Aligned_cols=67 Identities=39% Similarity=0.883 Sum_probs=47.6
Q ss_pred ccccCcCCccCCCCCcCccccccccccccCCceEeecCCCCcccccccCCCCCCCeeeCccchhhhh
Q 001721 579 KWVSGVDQSMCSGCRIPFNFKRKRHNCYNCGLVYCHTCSSKKSVKASMAPNPNKPYRVCDNCFGKLT 645 (1020)
Q Consensus 579 kwvs~~d~s~Cs~C~~~Fs~~~krhhC~~CG~v~C~~CSs~~~~~~~~~~~~~k~~RVC~~C~~~l~ 645 (1020)
.|+++.+...|..|...|+++++||||+.||.+||..|+.....++.......+++|||+.||..|+
T Consensus 2 ~W~~d~~~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~~~~~~~~~~~~~~~~RvC~~C~~~~~ 68 (69)
T PF01363_consen 2 HWVPDSEASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQRIPLPTPSSGSGEPVRVCDSCYSKLQ 68 (69)
T ss_dssp -SSSGGG-SB-TTT--B-BSSS-EEE-TTT--EEECCCS-EEEEET--GGTESEEEEE-HHHHHHHH
T ss_pred CcCCCCCCCcCcCcCCcCCCceeeEccCCCCCEECCchhCCEEcccccccCCCCcCEECHHHHHHhc
Confidence 5999999999999999999999999999999999999999998877323334679999999999875
No 12
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS). The interaction of RCC1 with ran probably plays an important role in the regulation of gene expression. RCC1, known as PRP20 or SRM1 in yeast, pim1 in fission yeast and BJ1 in Drosophila, is a protein that contains seven tandem repeats of a domain of about 50 to 60 amino acids. As shown in the following schematic representation, the repeats make up the major part of the length of the protein. Outside the repeat region, there is just a small N-terminal domain of about 40 to 50 residues and, in the Drosophila protein only, a C-terminal domain of about 130 residues. +----+-------+-------+-------+-------+-------+-------+-------+-------------+ |N-t.|Rpt. 1 |Rpt. 2 |Rpt. 3 |Rpt. 4 |Rpt. 5 |Rpt. 6 |Rpt. 7 | C-terminal | +----+-------+-------+-------+-------+-------+-------+-------+-------------+ The RCC1-type of repeat is also found in the X-linked retinitis pigmentosa GTPase regulator []. The RCC repeats form a beta-propeller structure.; PDB: 3MVD_L 3OF7_A 1I2M_D 1A12_B 3KCI_A 4DNV_B 4DNU_A 4D9S_B 4DNW_A.
Probab=99.09 E-value=7.5e-11 Score=96.68 Aligned_cols=50 Identities=32% Similarity=0.700 Sum_probs=47.9
Q ss_pred CCeEEEEeCCCCCCCC-CCCCCCcccCceeecccccceEEEEecCCcceee
Q 001721 526 RTEVYTWGKGANGRLG-HGDTDDRNFPSLVEALKDKQVKSIVCGTSFTAAI 575 (1020)
Q Consensus 526 dG~VytWG~n~~GQLG-~G~~~~~~~P~~V~~l~~~~V~~IacG~~~T~aL 575 (1020)
||+||+||.|.+|||| .++......|++|+.+.+.+|++|+||..||++|
T Consensus 1 dG~vy~wG~n~~GqLG~~~~~~~~~~P~~v~~~~~~~i~~va~G~~ht~~l 51 (51)
T PF00415_consen 1 DGRVYSWGSNDYGQLGSGGDNKNVSVPTKVPFLSGVRIVQVACGSDHTLAL 51 (51)
T ss_dssp TSEEEEEEEETTSTTSSSSSSSEEEEEEEEGGGTTSEEEEEEEESSEEEEE
T ss_pred CCcEEEEECCCCCCCCCCCCCCceeEEEEECCCCCCCEEEEEeCcceEEEC
Confidence 6999999999999999 8889999999999999999999999999999987
No 13
>KOG1818 consensus Membrane trafficking and cell signaling protein HRS, contains VHS and FYVE domains [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.08 E-value=2e-10 Score=135.64 Aligned_cols=70 Identities=37% Similarity=0.894 Sum_probs=61.9
Q ss_pred eeeccccCcCCccCCCCCcCccccccccccccCCceEeecCCCCcccccccCCCCCCCeeeCccchhhhhcccCC
Q 001721 576 CLHKWVSGVDQSMCSGCRIPFNFKRKRHNCYNCGLVYCHTCSSKKSVKASMAPNPNKPYRVCDNCFGKLTKATET 650 (1020)
Q Consensus 576 ~~~kwvs~~d~s~Cs~C~~~Fs~~~krhhC~~CG~v~C~~CSs~~~~~~~~~~~~~k~~RVC~~C~~~l~~~~~~ 650 (1020)
+.-.|+.+ ..|..|+..|+++.|+|||++||.+||..|+++...++.+|. .+++|||+.||+.+.+...+
T Consensus 158 ~~pdW~D~---~~C~rCr~~F~~~~rkHHCr~CG~vFC~qcss~s~~lP~~Gi--~~~VRVCd~C~E~l~~~s~~ 227 (634)
T KOG1818|consen 158 TAPDWIDS---EECLRCRVKFGLTNRKHHCRNCGQVFCGQCSSKSLTLPKLGI--EKPVRVCDSCYELLTRASVG 227 (634)
T ss_pred CCcccccc---cccceeeeeeeeccccccccccchhhccCccccccCcccccc--cccceehhhhHHHhhhcccc
Confidence 33456654 569999999999999999999999999999999999999998 67999999999999887765
No 14
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=1.9e-12 Score=154.23 Aligned_cols=188 Identities=30% Similarity=0.501 Sum_probs=151.0
Q ss_pred ceEEecccCCCCEEEEEecCcEEEEEEcCCeEEEEeCCCCCccCCCCCCCCCcceEeeccCCCcEEEEEecCCEEEEEEe
Q 001721 223 VPKAVESAVVLDVQNIACGGRHAALVTKQGEVFSWGEELGGRLGHGVDSDVSHPKLIDALKNINVELVACGEHHTCAVTL 302 (1020)
Q Consensus 223 ~P~~v~~~~~~~I~~Ia~G~~hs~~Lt~dG~Vy~wG~N~~GqLG~g~~~~~~~P~~V~~l~~~~I~~VacG~~ht~aLT~ 302 (1020)
.|+.+..+....|.+++||.+|.++++..|++|+||.|.+||+|++.......|.+++.+.+.+..+|++|..|++++..
T Consensus 4 ~~~~~~~l~~k~~lq~~cGn~hclal~~~g~~~~wg~~~~g~~~~~~~~~~~~p~~~~sl~g~p~a~v~~g~~hs~~lS~ 83 (850)
T KOG0941|consen 4 APRLVLILNYKHILQVGCGNNHCLALSCAGELFVWGMNNNGQLGRALYFPDAKPEPVESLKGVPLAQVSAGEAHSFALSS 83 (850)
T ss_pred hhHHHHHHhhhhhhhhccccHHHHhhhccCCeeeccCCccchhhhhccCCCCCCccchhhcCCcHHHHhcCCCcchhhhh
Confidence 34444445556899999999999999999999999999999999996554445999999999999999999999999874
Q ss_pred CCcEEEeCCCCCCCcccCCCCCcceecceeeCCCCCCCcEEEEEecCCeEEEEEcCCcEEEeccCCCCcCCCCCCccccc
Q 001721 303 SGDMYTWGGSNCNFGLLGHGNEMSLWLPKKLNGPLEGIHVSSVSCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRISVST 382 (1020)
Q Consensus 303 dG~VysWG~n~~~~GqLG~g~~~~~~~P~~I~~~l~~~~Iv~VacG~~Hs~aLt~~G~Vy~wG~N~~GQLG~g~~~~~~~ 382 (1020)
|+++++.+|.++++|....||+|+.-......
T Consensus 84 ------------------------------------------------~~~~lt~e~~~fs~Ga~~~~q~~h~~~~~~~~ 115 (850)
T KOG0941|consen 84 ------------------------------------------------HTVLLTDEGKVFSFGAGSTGQLGHSLTENEVL 115 (850)
T ss_pred ------------------------------------------------chhhcchhccccccCCcccccccccccccccc
Confidence 99999999999999999999999987778888
Q ss_pred ceeeccCCCCeEEEEecCCceEEEEEEeeecCcccccCCCCcEEEecCCCCCCcCCCCCCcceecEEeecc------CCC
Q 001721 383 PREVDSLKGLRTVRAACGVWHTAAVVEVMVGSSSSSNCSSGKLFTWGDGDRGRLGHGDKEARLVPTCVAAL------VEP 456 (1020)
Q Consensus 383 P~~V~~l~~~~I~~IacG~~ht~aLtE~~~~~~~~~~~~~G~Ly~WG~n~~GQLG~g~~~~~~~Pt~V~~l------~~~ 456 (1020)
|..+..+-+..+..|+||.+|+.++.. .-|++|..|.+..| +.....+..-..+ ...
T Consensus 116 ~~~v~e~i~~~~t~ia~~~~ht~a~v~-----------~l~qsf~~~~~~sG------k~~i~s~s~~~~l~~~d~~~~~ 178 (850)
T KOG0941|consen 116 PLLVLELIGSRVTRIACVRGHTLAIVP-----------RLGQSFSFGKGASG------KGVIVSLSGEDLLRDHDSEKDH 178 (850)
T ss_pred cHHHHHHHhhhhHHHHHHHHHHHhhhh-----------hhcceeecccCCCC------CceeeccchhhhcccccHHHHH
Confidence 998888888899999999999999985 68999999998877 1111111110001 112
Q ss_pred CeeEEEeeCcEEEEEecCC
Q 001721 457 NFCQVSCGHSLTVALTTTG 475 (1020)
Q Consensus 457 ~I~~Ia~G~~htlaLT~dG 475 (1020)
.+..+..|.+.++.|...+
T Consensus 179 ~~~~~~~g~dq~~~l~~~~ 197 (850)
T KOG0941|consen 179 RCSLAFAGGDQTFSLSSKG 197 (850)
T ss_pred HHHHHhcCCCceEEEEeec
Confidence 3445778888888776554
No 15
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS). The interaction of RCC1 with ran probably plays an important role in the regulation of gene expression. RCC1, known as PRP20 or SRM1 in yeast, pim1 in fission yeast and BJ1 in Drosophila, is a protein that contains seven tandem repeats of a domain of about 50 to 60 amino acids. As shown in the following schematic representation, the repeats make up the major part of the length of the protein. Outside the repeat region, there is just a small N-terminal domain of about 40 to 50 residues and, in the Drosophila protein only, a C-terminal domain of about 130 residues. +----+-------+-------+-------+-------+-------+-------+-------+-------------+ |N-t.|Rpt. 1 |Rpt. 2 |Rpt. 3 |Rpt. 4 |Rpt. 5 |Rpt. 6 |Rpt. 7 | C-terminal | +----+-------+-------+-------+-------+-------+-------+-------+-------------+ The RCC1-type of repeat is also found in the X-linked retinitis pigmentosa GTPase regulator []. The RCC repeats form a beta-propeller structure.; PDB: 3MVD_L 3OF7_A 1I2M_D 1A12_B 3KCI_A 4DNV_B 4DNU_A 4D9S_B 4DNW_A.
Probab=98.96 E-value=7.6e-10 Score=90.68 Aligned_cols=50 Identities=40% Similarity=0.737 Sum_probs=47.6
Q ss_pred CCeEEEEeCCCCCccC-CCCCCCCCcceEeeccCCCcEEEEEecCCEEEEE
Q 001721 251 QGEVFSWGEELGGRLG-HGVDSDVSHPKLIDALKNINVELVACGEHHTCAV 300 (1020)
Q Consensus 251 dG~Vy~wG~N~~GqLG-~g~~~~~~~P~~V~~l~~~~I~~VacG~~ht~aL 300 (1020)
||+||+||.|.+|||| .+.......|++|+.+.+.+|++|+||.+|+++|
T Consensus 1 dG~vy~wG~n~~GqLG~~~~~~~~~~P~~v~~~~~~~i~~va~G~~ht~~l 51 (51)
T PF00415_consen 1 DGRVYSWGSNDYGQLGSGGDNKNVSVPTKVPFLSGVRIVQVACGSDHTLAL 51 (51)
T ss_dssp TSEEEEEEEETTSTTSSSSSSSEEEEEEEEGGGTTSEEEEEEEESSEEEEE
T ss_pred CCcEEEEECCCCCCCCCCCCCCceeEEEEECCCCCCCEEEEEeCcceEEEC
Confidence 7999999999999999 8888889999999999999999999999999997
No 17
>KOG1729 consensus FYVE finger containing protein [General function prediction only]
Probab=98.84 E-value=5.9e-10 Score=122.37 Aligned_cols=68 Identities=34% Similarity=0.841 Sum_probs=61.2
Q ss_pred eeeccccCcCCccCCCCCc-CccccccccccccCCceEeecCCCCcccccccCCCCCCCeeeCccchhhhhc
Q 001721 576 CLHKWVSGVDQSMCSGCRI-PFNFKRKRHNCYNCGLVYCHTCSSKKSVKASMAPNPNKPYRVCDNCFGKLTK 646 (1020)
Q Consensus 576 ~~~kwvs~~d~s~Cs~C~~-~Fs~~~krhhC~~CG~v~C~~CSs~~~~~~~~~~~~~k~~RVC~~C~~~l~~ 646 (1020)
....|++|.+.+.|+.|.. .|++..|||||++||.+||..|+.++.+++.+. .++.|||+.||..|.+
T Consensus 158 ~~~~W~PD~ea~~C~~C~~~~Ftl~~RRHHCR~CG~ivC~~Cs~n~~~l~~~~---~k~~rvC~~CF~el~~ 226 (288)
T KOG1729|consen 158 SAAVWLPDSEATECMVCGCTEFTLSERRHHCRNCGDIVCAPCSRNRFLLPNLS---TKPIRVCDICFEELEK 226 (288)
T ss_pred cCCcccCcccceecccCCCccccHHHHHHHHHhcchHhhhhhhcCcccccccC---CCCceecHHHHHHHhc
Confidence 3467999999999999999 999999999999999999999999996666554 5899999999999976
No 18
>PTZ00303 phosphatidylinositol kinase; Provisional
Probab=98.79 E-value=2.3e-09 Score=125.28 Aligned_cols=70 Identities=21% Similarity=0.578 Sum_probs=52.9
Q ss_pred eeeccccCcCC-ccCCCCCcCcccc-----ccccccccCCceEeecCCCCccccc-----ccC-CCCCCCeeeCccchhh
Q 001721 576 CLHKWVSGVDQ-SMCSGCRIPFNFK-----RKRHNCYNCGLVYCHTCSSKKSVKA-----SMA-PNPNKPYRVCDNCFGK 643 (1020)
Q Consensus 576 ~~~kwvs~~d~-s~Cs~C~~~Fs~~-----~krhhC~~CG~v~C~~CSs~~~~~~-----~~~-~~~~k~~RVC~~C~~~ 643 (1020)
-...|++|.+. ..|..|+..|.+. .||||||.||.+||..||+++...+ ..+ +....++|||+.||.+
T Consensus 449 hAPvWqpDDEaSdtC~~C~kkFfSlsK~L~~RKHHCRkCGrVFC~~CSSnRs~yp~aKLpKPgsseE~ppRRVCD~CYdq 528 (1374)
T PTZ00303 449 HNPSWQKDDESSDSCPSCGRAFISLSRPLGTRAHHCRSCGIRLCVFCITKRAHYSFAKLAKPGSSDEAEERLVCDTCYKE 528 (1374)
T ss_pred cCCCCCCCcccCCcccCcCCcccccccccccccccccCCccccCccccCCcccCcccccCCCCCcccccccchhHHHHHH
Confidence 34579999885 7799999999754 5899999999999999999886431 111 1112467899999966
Q ss_pred hh
Q 001721 644 LT 645 (1020)
Q Consensus 644 l~ 645 (1020)
+.
T Consensus 529 ~E 530 (1374)
T PTZ00303 529 YE 530 (1374)
T ss_pred HH
Confidence 54
No 19
>KOG1819 consensus FYVE finger-containing proteins [General function prediction only]
Probab=98.78 E-value=1.8e-09 Score=120.97 Aligned_cols=71 Identities=32% Similarity=0.808 Sum_probs=63.6
Q ss_pred cceeeeeeccccCcCCccCCCCCcCccccccccccccCCceEeecCCCCcccccccCCCCCCCeeeCc-----cchhh
Q 001721 571 FTAAICLHKWVSGVDQSMCSGCRIPFNFKRKRHNCYNCGLVYCHTCSSKKSVKASMAPNPNKPYRVCD-----NCFGK 643 (1020)
Q Consensus 571 ~T~aL~~~kwvs~~d~s~Cs~C~~~Fs~~~krhhC~~CG~v~C~~CSs~~~~~~~~~~~~~k~~RVC~-----~C~~~ 643 (1020)
.++.|...-|+++.+...|+.|..||++.++||||++||.+||..||...+++|..+. .|..|||+ .||..
T Consensus 886 tsatlsppawipd~~a~~cmacq~pf~afrrrhhcrncggifcg~cs~asapip~~gl--~ka~rvcrpqsnldc~~r 961 (990)
T KOG1819|consen 886 TSATLSPPAWIPDEDAEQCMACQMPFNAFRRRHHCRNCGGIFCGKCSCASAPIPEHGL--DKAPRVCRPQSNLDCLTR 961 (990)
T ss_pred cccccCCcccCCCCcchhhhhccCcHHHHHHhhhhcccCceeecccccCCCCCccccc--ccCceecCCcccccceee
Confidence 3455566789999999999999999999999999999999999999999999998887 57899999 68765
No 20
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.76 E-value=1.7e-10 Score=137.78 Aligned_cols=139 Identities=33% Similarity=0.530 Sum_probs=123.7
Q ss_pred cceeeccCCCCeEEEEecCCceEEEEEEeeecCcccccCCCCcEEEecCCCCCCcCCCCCCcceecEEeeccCCCCeeEE
Q 001721 382 TPREVDSLKGLRTVRAACGVWHTAAVVEVMVGSSSSSNCSSGKLFTWGDGDRGRLGHGDKEARLVPTCVAALVEPNFCQV 461 (1020)
Q Consensus 382 ~P~~V~~l~~~~I~~IacG~~ht~aLtE~~~~~~~~~~~~~G~Ly~WG~n~~GQLG~g~~~~~~~Pt~V~~l~~~~I~~I 461 (1020)
.|+.+..+...++.+++||.+|+.++. ..|.+|.||.|.+||+|++.......|..+..+.+.+..+|
T Consensus 4 ~~~~~~~l~~k~~lq~~cGn~hclal~------------~~g~~~~wg~~~~g~~~~~~~~~~~~p~~~~sl~g~p~a~v 71 (850)
T KOG0941|consen 4 APRLVLILNYKHILQVGCGNNHCLALS------------CAGELFVWGMNNNGQLGRALYFPDAKPEPVESLKGVPLAQV 71 (850)
T ss_pred hhHHHHHHhhhhhhhhccccHHHHhhh------------ccCCeeeccCCccchhhhhccCCCCCCccchhhcCCcHHHH
Confidence 355555566668999999999999998 59999999999999999995443334999999999999999
Q ss_pred EeeCcEEEEEecCCcEEEEeCCCCCCCCCCCCCCCcceeeccccCCCcEEEEEecCcEEEEEeCCCeEEEEeCCCCCCCC
Q 001721 462 SCGHSLTVALTTTGHVYTMGSPVYGQLGDPKANGKLPTRVEGKLTKNFVEEIACGDYHVAVLTSRTEVYTWGKGANGRLG 541 (1020)
Q Consensus 462 a~G~~htlaLT~dG~Vy~wG~N~~GQLG~~~~~~~~P~~v~~~l~~~~I~~Ia~G~~HslaLTsdG~VytWG~n~~GQLG 541 (1020)
++|..|++++.. |+++++.+|.++++|.+..||+|
T Consensus 72 ~~g~~hs~~lS~---------------------------------------------~~~~lt~e~~~fs~Ga~~~~q~~ 106 (850)
T KOG0941|consen 72 SAGEAHSFALSS---------------------------------------------HTVLLTDEGKVFSFGAGSTGQLG 106 (850)
T ss_pred hcCCCcchhhhh---------------------------------------------chhhcchhccccccCCccccccc
Confidence 999999999876 99999999999999999999999
Q ss_pred CCCCCCcccCceeecccccceEEEEecCCcceeeee
Q 001721 542 HGDTDDRNFPSLVEALKDKQVKSIVCGTSFTAAICL 577 (1020)
Q Consensus 542 ~G~~~~~~~P~~V~~l~~~~V~~IacG~~~T~aL~~ 577 (1020)
|+-..+...|..+..+-+..+..|+||..||++++.
T Consensus 107 h~~~~~~~~~~~v~e~i~~~~t~ia~~~~ht~a~v~ 142 (850)
T KOG0941|consen 107 HSLTENEVLPLLVLELIGSRVTRIACVRGHTLAIVP 142 (850)
T ss_pred ccccccccccHHHHHHHhhhhHHHHHHHHHHHhhhh
Confidence 988899999999988888999999999999999884
No 21
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=98.70 E-value=2.4e-08 Score=72.87 Aligned_cols=30 Identities=53% Similarity=1.020 Sum_probs=26.1
Q ss_pred EEEEEecCcEEEEEeCCCeEEEEeCCCCCC
Q 001721 510 VEEIACGDYHVAVLTSRTEVYTWGKGANGR 539 (1020)
Q Consensus 510 I~~Ia~G~~HslaLTsdG~VytWG~n~~GQ 539 (1020)
|++|+||.+|+++|+++|+||+||.|.+||
T Consensus 1 V~~ia~G~~ht~al~~~g~v~~wG~n~~GQ 30 (30)
T PF13540_consen 1 VVQIACGGYHTCALTSDGEVYCWGDNNYGQ 30 (30)
T ss_dssp EEEEEEESSEEEEEE-TTEEEEEE--TTST
T ss_pred CEEEEecCCEEEEEEcCCCEEEEcCCcCCC
Confidence 789999999999999999999999999998
No 22
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=98.65 E-value=3.2e-08 Score=72.26 Aligned_cols=30 Identities=37% Similarity=0.926 Sum_probs=26.1
Q ss_pred EEEEEecCCeEEEEEcCCcEEEeccCCCCc
Q 001721 342 VSSVSCGPWHTAVVTSAGQLFTFGDGTFGV 371 (1020)
Q Consensus 342 Iv~VacG~~Hs~aLt~~G~Vy~wG~N~~GQ 371 (1020)
|++|+||.+|+++|+++|+||+||+|.+||
T Consensus 1 V~~ia~G~~ht~al~~~g~v~~wG~n~~GQ 30 (30)
T PF13540_consen 1 VVQIACGGYHTCALTSDGEVYCWGDNNYGQ 30 (30)
T ss_dssp EEEEEEESSEEEEEE-TTEEEEEE--TTST
T ss_pred CEEEEecCCEEEEEEcCCCEEEEcCCcCCC
Confidence 789999999999999999999999999997
No 23
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=98.52 E-value=4.1e-08 Score=82.56 Aligned_cols=55 Identities=47% Similarity=1.100 Sum_probs=48.4
Q ss_pred CccCCCCCcCccccccccccccCCceEeecCCCCcccccccCCCCCCCeeeCccchh
Q 001721 586 QSMCSGCRIPFNFKRKRHNCYNCGLVYCHTCSSKKSVKASMAPNPNKPYRVCDNCFG 642 (1020)
Q Consensus 586 ~s~Cs~C~~~Fs~~~krhhC~~CG~v~C~~CSs~~~~~~~~~~~~~k~~RVC~~C~~ 642 (1020)
...|+.|...|++..++|||+.||.++|..|+......+... ..+|+|||+.||.
T Consensus 2 ~~~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~~~~~~~~--~~~~~rvC~~C~~ 56 (57)
T cd00065 2 ASSCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNRIPLPSMG--GGKPVRVCDSCYE 56 (57)
T ss_pred cCcCcccCccccCCccccccCcCcCCcChHHcCCeeecCccc--CCCccEeChHHhC
Confidence 457999999999999999999999999999999998776532 3579999999985
No 24
>PF12814 Mcp5_PH: Meiotic cell cortex C-terminal pleckstrin homology; InterPro: IPR024774 This pleckstrin homology domain is found in eukaryotic proteins, including Mcp5, a fungal protein that anchors dynein at the cell cortex during the horsetail phase (prophase I) of meiosis. During prophase I of fission yeast all the telomeres become bundled at the spindle pole body and subsequently the nucleus undergoes a dynamic oscillation, resulting in elongated nuclear morphology known as "horsetail" nucleus. The pleckstrin homology domain is necessary for the cortical localisation of the Mcp5 protein during meiosis [].; GO: 0005515 protein binding, 0032065 cortical protein anchoring, 0005938 cell cortex
Probab=98.12 E-value=1.1e-06 Score=85.85 Aligned_cols=49 Identities=29% Similarity=0.580 Sum_probs=40.3
Q ss_pred hhhhccCCCCccc-----cceEEEEecCcccceeecCcccchhhhhhhHhhhcC
Q 001721 4 QPIFQRYPRPEKE-----YQSFSLIYNDRSLDLICKDKDEAEVWFTGLKALISR 52 (1020)
Q Consensus 4 ~~~~~~~~~~~~~-----~~sfsl~~~~~~ld~ickd~~~~~~w~~~l~~~~~~ 52 (1020)
+.|+...+.|+-. +.||.++.++|+|||+|++++|+|+||.||+.||.+
T Consensus 70 ~~V~~~~~~~~~~~~~~~~~si~i~t~~R~L~l~a~s~~~~~~W~~aL~~L~~~ 123 (123)
T PF12814_consen 70 TEVKDGNPSPPGLKKPDHNKSIIIVTPDRSLDLTAPSRERHEIWFNALRYLLQK 123 (123)
T ss_pred EEecCCCCCCccccccccceEEEEEcCCeEEEEEeCCHHHHHHHHHHHHHHhhC
Confidence 4566666666554 677777779999999999999999999999999864
No 25
>KOG1841 consensus Smad anchor for receptor activation [Defense mechanisms]
Probab=97.94 E-value=2.3e-06 Score=105.16 Aligned_cols=62 Identities=27% Similarity=0.573 Sum_probs=52.6
Q ss_pred eeeccccCcCCccCCCCCcCccccccccccccCCceEeecCCCCcccccccCCCCCCCeeeCccc
Q 001721 576 CLHKWVSGVDQSMCSGCRIPFNFKRKRHNCYNCGLVYCHTCSSKKSVKASMAPNPNKPYRVCDNC 640 (1020)
Q Consensus 576 ~~~kwvs~~d~s~Cs~C~~~Fs~~~krhhC~~CG~v~C~~CSs~~~~~~~~~~~~~k~~RVC~~C 640 (1020)
....|+++.....|+.|.+.|.+++||||||+||.++|..|++.+..+..+.+ +--|||..|
T Consensus 547 kqP~wvpdse~pncm~clqkft~ikrrhhcRacgkVlcgvccnek~~leyl~e---~~~rv~nV~ 608 (1287)
T KOG1841|consen 547 KQPSWVPDSEAPNCMDCLQKFTPIKRRHHCRACGKVLCGVCCNEKSALEYLSE---SEGRVSNVD 608 (1287)
T ss_pred CCCccCccccCchHHHHHhhcccccccccchhccceeehhhcchhhhhhhcCc---ccccccccc
Confidence 34589999999999999999999999999999999999999999987766643 344666655
No 26
>KOG1842 consensus FYVE finger-containing protein [General function prediction only]
Probab=97.93 E-value=8e-07 Score=100.01 Aligned_cols=69 Identities=29% Similarity=0.757 Sum_probs=52.9
Q ss_pred eccccCcCCccCCCCCcCccccccccccccCCceEeecCCCCcccccc------------cC--------CCCCCCeeeC
Q 001721 578 HKWVSGVDQSMCSGCRIPFNFKRKRHNCYNCGLVYCHTCSSKKSVKAS------------MA--------PNPNKPYRVC 637 (1020)
Q Consensus 578 ~kwvs~~d~s~Cs~C~~~Fs~~~krhhC~~CG~v~C~~CSs~~~~~~~------------~~--------~~~~k~~RVC 637 (1020)
-.|+.|.+.-.|..|...|++++||||||-||+|+|.+|+..-.+--+ .. +....+.|+|
T Consensus 172 VpW~DDs~V~~CP~Ca~~F~l~rRrHHCRLCG~VmC~~C~k~iSle~a~~ltsss~~dt~~e~~qq~~~lH~~~~~iRlC 251 (505)
T KOG1842|consen 172 VPWLDDSSVQFCPECANSFGLTRRRHHCRLCGRVMCRDCSKFISLEIAIGLTSSSASDTHFEPNQQKDDLHQHPQPIRLC 251 (505)
T ss_pred ccccCCCcccccccccchhhhHHHhhhhhhcchHHHHHHHHhcChHHHHHHhhccCCCCCcCcccCcccccCChhHhHHH
Confidence 369999999999999999999999999999999999999654431100 00 1123468999
Q ss_pred ccchhhhhc
Q 001721 638 DNCFGKLTK 646 (1020)
Q Consensus 638 ~~C~~~l~~ 646 (1020)
..|-..|-.
T Consensus 252 ~hCl~~L~~ 260 (505)
T KOG1842|consen 252 MHCLDNLFR 260 (505)
T ss_pred HHHHHHHHH
Confidence 999766543
No 27
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=97.69 E-value=1.6e-05 Score=87.57 Aligned_cols=82 Identities=28% Similarity=0.709 Sum_probs=63.6
Q ss_pred EEEEecCCcceeee--------eeccccCcCCccCCCCCcCcccc-----------ccccccccCCceEeecCCCCcccc
Q 001721 563 KSIVCGTSFTAAIC--------LHKWVSGVDQSMCSGCRIPFNFK-----------RKRHNCYNCGLVYCHTCSSKKSVK 623 (1020)
Q Consensus 563 ~~IacG~~~T~aL~--------~~kwvs~~d~s~Cs~C~~~Fs~~-----------~krhhC~~CG~v~C~~CSs~~~~~ 623 (1020)
.-++||.+--+++- .-.|+.+ ..|..|.+||-|. .|.|||+.||..+|..|+++....
T Consensus 254 ~l~S~~edg~i~~w~mn~~r~etpewl~s---~~cQ~c~qpffwn~~~m~~~k~~glr~h~crkcg~avc~~c~s~~~~~ 330 (404)
T KOG1409|consen 254 QLISCGEDGGIVVWNMNVKRVETPEWLDS---DSCQKCNQPFFWNFRQMWDRKQLGLRQHHCRKCGKAVCGKCSSNRSSY 330 (404)
T ss_pred eeeeccCCCeEEEEeccceeecCcccccc---chhhhhCchHHHHHHHHHhhhhhhhhhhhhhhhhhhcCcccccCcccc
Confidence 34677766555542 1234443 4588999998543 368999999999999999999999
Q ss_pred cccCCCCCCCeeeCccchhhhhcccC
Q 001721 624 ASMAPNPNKPYRVCDNCFGKLTKATE 649 (1020)
Q Consensus 624 ~~~~~~~~k~~RVC~~C~~~l~~~~~ 649 (1020)
+.++. +-.+|+|++||..++..++
T Consensus 331 p~mg~--e~~vR~~~~c~~~i~~~~~ 354 (404)
T KOG1409|consen 331 PTMGF--EFSVRVCDSCYPTIKDEER 354 (404)
T ss_pred ccccc--eeEEEEecccchhhhcCCC
Confidence 99987 5689999999999987665
No 28
>cd01248 PH_PLC Phospholipase C (PLC) pleckstrin homology (PH) domain. Phospholipase C (PLC) pleckstrin homology (PH) domain. There are several isozymes of PLC (beta, gamma, delta, epsilon. zeta). While, PLC beta, gamma and delta all have N-terminal PH domains, lipid binding specificity is not conserved between them. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.55 E-value=3.1e-05 Score=74.86 Aligned_cols=46 Identities=28% Similarity=0.569 Sum_probs=38.7
Q ss_pred hhhhccCCCC----ccccceEEEEecCc----ccceeecCcccchhhhhhhHhh
Q 001721 4 QPIFQRYPRP----EKEYQSFSLIYNDR----SLDLICKDKDEAEVWFTGLKAL 49 (1020)
Q Consensus 4 ~~~~~~~~~~----~~~~~sfsl~~~~~----~ld~ickd~~~~~~w~~~l~~~ 49 (1020)
+..|+++... +.|.+.||+|||.. +|||||.|+++|+.|..||++|
T Consensus 62 ~k~~~~~~~~~~~~~~e~~~fTIiy~~~~~~k~L~lVA~s~~~a~~W~~gL~~L 115 (115)
T cd01248 62 PKDLKLRAELNQGNSLEERCFTIVYGTDLNLKSLDLVAPSEEEAKTWVSGLRKL 115 (115)
T ss_pred CcchHHhhhhhcCCCccccEEEEEECCCCCeeEEEEEECCHHHHHHHHHHHhhC
Confidence 4556666544 48899999999654 8999999999999999999986
No 29
>KOG1843 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.22 E-value=8.1e-05 Score=83.51 Aligned_cols=67 Identities=13% Similarity=0.168 Sum_probs=56.5
Q ss_pred eeccccCcCCccCCCCCcCcc-ccccccccccCCceEeecCCCCcccccccCCCCCCCeeeCccchhhh
Q 001721 577 LHKWVSGVDQSMCSGCRIPFN-FKRKRHNCYNCGLVYCHTCSSKKSVKASMAPNPNKPYRVCDNCFGKL 644 (1020)
Q Consensus 577 ~~kwvs~~d~s~Cs~C~~~Fs-~~~krhhC~~CG~v~C~~CSs~~~~~~~~~~~~~k~~RVC~~C~~~l 644 (1020)
..+|..+.....|++|-.+|+ ++.+|||||.|+..||.+|+-...+++... --..++|||+.|+..|
T Consensus 151 ap~f~yskskglfagvSvegsaI~erR~anR~~yg~~cra~~ilsg~vp~p~-a~d~l~RVldS~~~nl 218 (473)
T KOG1843|consen 151 APVFLYSKSKGLFAGVSVEGSAIIERREANRKFYGIFCRAKSILSGLVPVPF-AADPLQRVLDSCAFNL 218 (473)
T ss_pred CccccccccccceeeeecccceeeecchhhhhhcCccchhhhhhccCCCCCc-ccCCHHHHHhhHhhcc
Confidence 357888899999999999998 888999999999999999987776665432 1245899999999998
No 30
>KOG4424 consensus Predicted Rho/Rac guanine nucleotide exchange factor/faciogenital dysplasia protein 3 [Signal transduction mechanisms]
Probab=95.88 E-value=0.0035 Score=73.71 Aligned_cols=67 Identities=24% Similarity=0.478 Sum_probs=54.6
Q ss_pred CcCCccCCCCCcCcc-ccccccccccCCceEeecCCCCcccccccCCCCCCCeeeCccchhhhhcccCCCC
Q 001721 583 GVDQSMCSGCRIPFN-FKRKRHNCYNCGLVYCHTCSSKKSVKASMAPNPNKPYRVCDNCFGKLTKATETSS 652 (1020)
Q Consensus 583 ~~d~s~Cs~C~~~Fs-~~~krhhC~~CG~v~C~~CSs~~~~~~~~~~~~~k~~RVC~~C~~~l~~~~~~~~ 652 (1020)
+.....|..|+.+|+ .+++||||..||.+.|..|+.....+. .+..+.-|||..||.....+..+++
T Consensus 412 ~~k~~~c~~c~e~~~s~t~~R~~~k~~~~vlc~~cs~~~~~l~---~~~s~ssrv~~~~~~~~~~a~~s~~ 479 (623)
T KOG4424|consen 412 DNKVTSCDSCEETFNSITFRRHRCKAKGAVLCDKCSDFMAKLS---YDNSRSSRVCMDRYLTPSGAPGSPP 479 (623)
T ss_pred ccccccchhhcCchhhHHHhhhhhhhccceeeccccchhhhhc---ccccchhhhhhhhccCCCCCCCCch
Confidence 667788999999997 899999999999999999999885443 3346788999999988665555443
No 31
>KOG1811 consensus Predicted Zn2+-binding protein, contains FYVE domain [General function prediction only]
Probab=94.12 E-value=0.0048 Score=72.33 Aligned_cols=65 Identities=28% Similarity=0.739 Sum_probs=53.3
Q ss_pred eeccccCc----CCccCCCC-CcCccccccccccccCCceEeecCCCCcccccccCCCCCCCeeeCccchhh
Q 001721 577 LHKWVSGV----DQSMCSGC-RIPFNFKRKRHNCYNCGLVYCHTCSSKKSVKASMAPNPNKPYRVCDNCFGK 643 (1020)
Q Consensus 577 ~~kwvs~~----d~s~Cs~C-~~~Fs~~~krhhC~~CG~v~C~~CSs~~~~~~~~~~~~~k~~RVC~~C~~~ 643 (1020)
.|.|+.+. ....|+.| +..|....|+|||+.||...|++|...+.....-+. +.|.++||.|+..
T Consensus 313 l~nfq~darrafs~a~~~a~~R~~~kd~~Rk~~~~g~Ga~e~aa~ea~kgiqEd~gs--e~~Adg~Dq~psv 382 (1141)
T KOG1811|consen 313 LHNFQPDARRAFSEAICMACCREHFKDFNRKHHCRGCGALECAACEAKKGIQEDCGS--ENPADGCDQCPSV 382 (1141)
T ss_pred hhhcChhhhhhhhhhHHHHHHHHHHHHHHHhhhccccchHHHhHHHHhhhhhhcccc--cCcccccccccch
Confidence 56788887 56778875 777888889999999999999999998877765543 5689999999854
No 32
>KOG0230 consensus Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins [Signal transduction mechanisms]
Probab=91.63 E-value=0.13 Score=66.74 Aligned_cols=49 Identities=33% Similarity=0.942 Sum_probs=38.3
Q ss_pred ccCCCCCcCccccccccccccCCceEeecCCCCcccccccCCCCCCCeeeCccchhhhhccc
Q 001721 587 SMCSGCRIPFNFKRKRHNCYNCGLVYCHTCSSKKSVKASMAPNPNKPYRVCDNCFGKLTKAT 648 (1020)
Q Consensus 587 s~Cs~C~~~Fs~~~krhhC~~CG~v~C~~CSs~~~~~~~~~~~~~k~~RVC~~C~~~l~~~~ 648 (1020)
..|..|. +...++|||+.||++||..|. +..++.+|+|..|+.+.....
T Consensus 6 ~~~~~~~---t~~~~~~~~~~~g~~~~~~~~----------~~~~~~i~~~~~~~~~~~~~~ 54 (1598)
T KOG0230|consen 6 NVCYDCD---TSVNRRHHCRVCGRVFCSKCQ----------DSPETSIRVCNECRGQWEQGN 54 (1598)
T ss_pred cchhccc---cccccCCCCcccCceeccccC----------CCCccceeehhhhhhhccccC
Confidence 3466666 666789999999999999997 222458999999999876544
No 33
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=90.15 E-value=1.2 Score=42.34 Aligned_cols=74 Identities=26% Similarity=0.360 Sum_probs=50.1
Q ss_pred hhhhhhhh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH---HHHHHhhhhhHHHHHHHHHHHHHHH
Q 001721 786 VVDDAKRT------SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAV---AGEETAKCRAAKDVIKSLTAQLKDM 856 (1020)
Q Consensus 786 ~~~~l~~~------~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~---a~eE~~k~~aake~iksl~~qlk~~ 856 (1020)
+...++++ ++|++.|-.|...|..+.+.+..+--...+++.+++.- +.+--++.+..|+-|+.|..+++++
T Consensus 14 v~~~l~~R~~~~~~vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~ 93 (108)
T PF02403_consen 14 VRENLKKRGGDEEDVDEIIELDQERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKEL 93 (108)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455554 77888888888888888888877777777777776653 3444445555677777777766666
Q ss_pred hhh
Q 001721 857 AEM 859 (1020)
Q Consensus 857 ~e~ 859 (1020)
.++
T Consensus 94 e~~ 96 (108)
T PF02403_consen 94 EEE 96 (108)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 34
>PRK15396 murein lipoprotein; Provisional
Probab=89.99 E-value=1.4 Score=39.66 Aligned_cols=48 Identities=15% Similarity=0.291 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhHHHHHHH
Q 001721 794 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKS 848 (1020)
Q Consensus 794 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~eE~~k~~aake~iks 848 (1020)
..+|.+|.+||+.|..+.+++..+++..+..++. |.|||++ |.+=|.-
T Consensus 24 ~~kvd~LssqV~~L~~kvdql~~dv~~~~~~~~~----a~~eA~r---aN~RlDn 71 (78)
T PRK15396 24 NAKIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQA----AKDDAAR---ANQRLDN 71 (78)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH---HHHHHHH
Confidence 3478899999999999999999999998887777 7789988 5554443
No 35
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=88.53 E-value=4.6 Score=54.01 Aligned_cols=112 Identities=16% Similarity=0.119 Sum_probs=64.5
Q ss_pred CCCCeeEEE-eeCcEEEEEecCCcEEEEeCCCCCCCCCCCCCCCcceeeccccCCCcEEEEEecCcE-EEEEeCCCeEEE
Q 001721 454 VEPNFCQVS-CGHSLTVALTTTGHVYTMGSPVYGQLGDPKANGKLPTRVEGKLTKNFVEEIACGDYH-VAVLTSRTEVYT 531 (1020)
Q Consensus 454 ~~~~I~~Ia-~G~~htlaLT~dG~Vy~wG~N~~GQLG~~~~~~~~P~~v~~~l~~~~I~~Ia~G~~H-slaLTsdG~Vyt 531 (1020)
.+..|..++ .+.++.++|+..|++-..= ..-.|..+...-....|..|++-..| -+|+|.+|++|.
T Consensus 701 ~~~~i~a~Avv~~~~fvald~qg~lt~h~------------k~g~p~~l~~~gl~G~ik~l~lD~~~nL~Alt~~G~Lf~ 768 (1774)
T PF11725_consen 701 EDRVITAFAVVNDNKFVALDDQGDLTAHQ------------KPGRPVPLSRPGLSGEIKDLALDEKQNLYALTSTGELFR 768 (1774)
T ss_pred CcCcceeEEEEcCCceEEeccCCcccccc------------CCCCCccCCCCCCCcchhheeeccccceeEecCCCceee
Confidence 333444433 3556777777777665421 01114444432224569999999886 578999999998
Q ss_pred EeCCCCCCCCCCCCCCcccCceeecccccceEEEEecCCcceeeeee
Q 001721 532 WGKGANGRLGHGDTDDRNFPSLVEALKDKQVKSIVCGTSFTAAICLH 578 (1020)
Q Consensus 532 WG~n~~GQLG~G~~~~~~~P~~V~~l~~~~V~~IacG~~~T~aL~~~ 578 (1020)
-=.-.+-..-.++ ......++|..+.+..|..+....+|.+.+...
T Consensus 769 ~~k~~WQ~~~~~~-~~~~~W~~v~lP~~~~v~~l~~~~~~~l~~~~~ 814 (1774)
T PF11725_consen 769 LPKEAWQGNAEGD-QMAAKWQKVALPDEQPVKSLRTNDDNHLSAQIE 814 (1774)
T ss_pred cCHHHhhCcccCC-ccccCceeccCCCCCchhhhhcCCCCceEEEec
Confidence 5433222111111 112344555555666788888888888877643
No 36
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=88.38 E-value=0.062 Score=67.13 Aligned_cols=132 Identities=16% Similarity=0.251 Sum_probs=88.4
Q ss_pred CCCEEEEEecCcEEEEEEcCCeEEEEeCCCCCccCC--CCCCCCCcceEe-eccCCCcEEEEEecCCEEEEEEeCCcEEE
Q 001721 232 VLDVQNIACGGRHAALVTKQGEVFSWGEELGGRLGH--GVDSDVSHPKLI-DALKNINVELVACGEHHTCAVTLSGDMYT 308 (1020)
Q Consensus 232 ~~~I~~Ia~G~~hs~~Lt~dG~Vy~wG~N~~GqLG~--g~~~~~~~P~~V-~~l~~~~I~~VacG~~ht~aLT~dG~Vys 308 (1020)
..+++.|.+-.+..++|.+.|++|.|-....--|-. ....+...|..- -.+.+.+|+.+++..-..-++|++|+|-+
T Consensus 373 an~~I~I~A~s~el~AlhrkGelYqWaWdESEglddplai~kn~dHPd~a~iG~hge~ii~lSanniR~si~T~nghlas 452 (3015)
T KOG0943|consen 373 ANKFICIGALSSELLALHRKGELYQWAWDESEGLDDPLAINKNLDHPDAAFIGLHGEKIILLSANNIRASIATENGHLAS 452 (3015)
T ss_pred CCeeEEeehhHHHHHHHhhCCceeeeecccccCCCChhhcccCCCCCccceecccCCeeEEeecCceeeeeeecCCchhh
Confidence 446777777777788999999999998655433322 112223333322 24567899999999999999999999999
Q ss_pred eCCCCCCCcccCCCCCcc--eecceeeCCCCCCCcEEEEEecCCeEEEEEcCCcEEEeccCCCCc
Q 001721 309 WGGSNCNFGLLGHGNEMS--LWLPKKLNGPLEGIHVSSVSCGPWHTAVVTSAGQLFTFGDGTFGV 371 (1020)
Q Consensus 309 WG~n~~~~GqLG~g~~~~--~~~P~~I~~~l~~~~Iv~VacG~~Hs~aLt~~G~Vy~wG~N~~GQ 371 (1020)
|=+- +|.+.... +..-+++. .+++.+++..|...|+++...+.-+|-||---+-+
T Consensus 453 WlDE------cgagV~fkLa~ea~Tkie--ed~~maVqd~~~adhlaAf~~dniihWcGiVPf~e 509 (3015)
T KOG0943|consen 453 WLDE------CGAGVAFKLAHEAQTKIE--EDGEMAVQDHCCADHLAAFLEDNIIHWCGIVPFSE 509 (3015)
T ss_pred HHhh------hhhhhhhhhhhhhhhhhh--hhhHHHHHHHHHHHHHHHHhhhceeeEEeeeeehh
Confidence 9433 22222211 11222232 45677888888889999999999999999544433
No 37
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=88.19 E-value=1.8 Score=39.53 Aligned_cols=42 Identities=21% Similarity=0.273 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhh
Q 001721 795 EEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCR 840 (1020)
Q Consensus 795 qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~eE~~k~~ 840 (1020)
-+|.+|.+||+.|..|.++...+++..+..++. |.|||++..
T Consensus 24 ~kvdqLss~V~~L~~kvdql~~dv~~a~aaa~a----Ak~EA~RAN 65 (85)
T PRK09973 24 QKVNQLASNVQTLNAKIARLEQDMKALRPQIYA----AKSEANRAN 65 (85)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH
Confidence 479999999999999999999999887666655 678888833
No 38
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=88.08 E-value=4 Score=34.41 Aligned_cols=47 Identities=19% Similarity=0.306 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhHHHHHHH
Q 001721 795 EEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKS 848 (1020)
Q Consensus 795 qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~eE~~k~~aake~iks 848 (1020)
.-|.+|-++|..|..|.+++..+|..++..++ .|.|||++ |.+=|.-
T Consensus 3 akid~Ls~dVq~L~~kvdqLs~dv~~lr~~v~----~ak~EAaR---AN~RlDN 49 (56)
T PF04728_consen 3 AKIDQLSSDVQTLNSKVDQLSSDVNALRADVQ----AAKEEAAR---ANQRLDN 49 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH---HHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH---HHHHHHh
Confidence 45788999999999999999999998876554 68899998 5554443
No 39
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=88.02 E-value=0.33 Score=47.30 Aligned_cols=50 Identities=24% Similarity=0.697 Sum_probs=38.5
Q ss_pred CCccCCCCCcCccccc-cccccccCCceEeecCCCCcccccccCCCCCCCeeeCccchhh
Q 001721 585 DQSMCSGCRIPFNFKR-KRHNCYNCGLVYCHTCSSKKSVKASMAPNPNKPYRVCDNCFGK 643 (1020)
Q Consensus 585 d~s~Cs~C~~~Fs~~~-krhhC~~CG~v~C~~CSs~~~~~~~~~~~~~k~~RVC~~C~~~ 643 (1020)
+...|..|..+|+|.. ..+.|..|...+|..|+.. ....+.-+|..|+.+
T Consensus 53 ~~~~C~~C~~~fg~l~~~~~~C~~C~~~VC~~C~~~---------~~~~~~WlC~vC~k~ 103 (118)
T PF02318_consen 53 GERHCARCGKPFGFLFNRGRVCVDCKHRVCKKCGVY---------SKKEPIWLCKVCQKQ 103 (118)
T ss_dssp CCSB-TTTS-BCSCTSTTCEEETTTTEEEETTSEEE---------TSSSCCEEEHHHHHH
T ss_pred CCcchhhhCCcccccCCCCCcCCcCCccccCccCCc---------CCCCCCEEChhhHHH
Confidence 4568999999999775 5677999999999999766 123567889999875
No 40
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=86.50 E-value=2.5 Score=44.65 Aligned_cols=65 Identities=20% Similarity=0.300 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhh
Q 001721 794 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTAQLKDMAEM 859 (1020)
Q Consensus 794 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~eE~~k~~aake~iksl~~qlk~~~e~ 859 (1020)
+|+..+++.++..|+++++..+.+|+.++.+++++ ...++|+..+.+.-+-++.|..+++++.+.
T Consensus 61 s~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~-~~~r~~~~eR~~~l~~l~~l~~~~~~l~~e 125 (188)
T PF03962_consen 61 SQAKQKRQNKLEKLQKEIEELEKKIEELEEKIEEA-KKGREESEEREELLEELEELKKELKELKKE 125 (188)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888899999999999999999999998888 556677755555555555555555444433
No 41
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=86.23 E-value=26 Score=38.72 Aligned_cols=63 Identities=29% Similarity=0.484 Sum_probs=37.3
Q ss_pred CCEEEEEEeCCcEEEeCCCCCCCcccCCC----CCcceecceeeCCCCCCCcEEEEEecCCeEEEEEcCCcEEEec
Q 001721 294 EHHTCAVTLSGDMYTWGGSNCNFGLLGHG----NEMSLWLPKKLNGPLEGIHVSSVSCGPWHTAVVTSAGQLFTFG 365 (1020)
Q Consensus 294 ~~ht~aLT~dG~VysWG~n~~~~GqLG~g----~~~~~~~P~~I~~~l~~~~Iv~VacG~~Hs~aLt~~G~Vy~wG 365 (1020)
..|++++- ++++|.||..++..|.+..- .....|.-.+|.+.+.+ +-+.|++++-.+ +.|.||
T Consensus 80 YGHtvV~y-~d~~yvWGGRND~egaCN~Ly~fDp~t~~W~~p~v~G~vPg-------aRDGHsAcV~gn-~MyiFG 146 (392)
T KOG4693|consen 80 YGHTVVEY-QDKAYVWGGRNDDEGACNLLYEFDPETNVWKKPEVEGFVPG-------ARDGHSACVWGN-QMYIFG 146 (392)
T ss_pred cCceEEEE-cceEEEEcCccCcccccceeeeeccccccccccceeeecCC-------ccCCceeeEECc-EEEEec
Confidence 45776654 77999999765445554322 22344444444443332 234688887644 789998
No 42
>PLN02153 epithiospecifier protein
Probab=85.44 E-value=74 Score=36.40 Aligned_cols=16 Identities=13% Similarity=0.225 Sum_probs=11.7
Q ss_pred EEEEEeCCCeEEEEeC
Q 001721 519 HVAVLTSRTEVYTWGK 534 (1020)
Q Consensus 519 HslaLTsdG~VytWG~ 534 (1020)
+++.+..+++||.||-
T Consensus 307 ~~~~v~~~~~~~~~gG 322 (341)
T PLN02153 307 TTATVYGKNGLLMHGG 322 (341)
T ss_pred cccccCCcceEEEEcC
Confidence 4556667779999983
No 43
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=84.22 E-value=0.13 Score=64.56 Aligned_cols=128 Identities=19% Similarity=0.216 Sum_probs=84.2
Q ss_pred CCcEEEEEecCCEEEEEEeCCcEEEeCCCCCCCcccCCC--CCcceecceeeCCCCCCCcEEEEEecCCeEEEEEcCCcE
Q 001721 284 NINVELVACGEHHTCAVTLSGDMYTWGGSNCNFGLLGHG--NEMSLWLPKKLNGPLEGIHVSSVSCGPWHTAVVTSAGQL 361 (1020)
Q Consensus 284 ~~~I~~VacG~~ht~aLT~dG~VysWG~n~~~~GqLG~g--~~~~~~~P~~I~~~l~~~~Iv~VacG~~Hs~aLt~~G~V 361 (1020)
..+++.|.+-.+..++|..+|++|.|-+.. .--|-.. ...+...|......+.+.+|+.+++..--.-++|++|+|
T Consensus 373 an~~I~I~A~s~el~AlhrkGelYqWaWdE--SEglddplai~kn~dHPd~a~iG~hge~ii~lSanniR~si~T~nghl 450 (3015)
T KOG0943|consen 373 ANKFICIGALSSELLALHRKGELYQWAWDE--SEGLDDPLAINKNLDHPDAAFIGLHGEKIILLSANNIRASIATENGHL 450 (3015)
T ss_pred CCeeEEeehhHHHHHHHhhCCceeeeeccc--ccCCCChhhcccCCCCCccceecccCCeeEEeecCceeeeeeecCCch
Confidence 457888888888899999999999998762 2222221 112233444433346788999999999999999999999
Q ss_pred EEeccCCCCcCCCCCCccc--ccceeeccCCCCeEEEEecCCceEEEEEEeeecCcccccCCCCcEEEecC
Q 001721 362 FTFGDGTFGVLGHGDRISV--STPREVDSLKGLRTVRAACGVWHTAAVVEVMVGSSSSSNCSSGKLFTWGD 430 (1020)
Q Consensus 362 y~wG~N~~GQLG~g~~~~~--~~P~~V~~l~~~~I~~IacG~~ht~aLtE~~~~~~~~~~~~~G~Ly~WG~ 430 (1020)
.+|=+- +|.|-.... ..-+++ ...+..+++.-|...|+++..+ +..+|-||-
T Consensus 451 asWlDE----cgagV~fkLa~ea~Tki-eed~~maVqd~~~adhlaAf~~------------dniihWcGi 504 (3015)
T KOG0943|consen 451 ASWLDE----CGAGVAFKLAHEAQTKI-EEDGEMAVQDHCCADHLAAFLE------------DNIIHWCGI 504 (3015)
T ss_pred hhHHhh----hhhhhhhhhhhhhhhhh-hhhhHHHHHHHHHHHHHHHHhh------------hceeeEEee
Confidence 999543 333211111 111111 2334556667777888888764 888999994
No 44
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=82.88 E-value=10 Score=33.07 Aligned_cols=62 Identities=23% Similarity=0.163 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHh
Q 001721 796 EVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTAQLKDMA 857 (1020)
Q Consensus 796 ev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~eE~~k~~aake~iksl~~qlk~~~ 857 (1020)
|+..|..+|+.|=+.|+++..|=..++.++.....-=+-=.+|..+|..=|+++..+||.|-
T Consensus 1 ~L~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk~le 62 (65)
T TIGR02449 1 ELQALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRLKALE 62 (65)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 35667778888888888888887777777665443333334566677777888888888774
No 45
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only]
Probab=82.81 E-value=10 Score=45.71 Aligned_cols=70 Identities=19% Similarity=0.251 Sum_probs=49.7
Q ss_pred cEEEEEecC-CEEEEEEeCCcEEE-eCCCCCCCcccCCCCCcceecceeeCCCCCCCcEEEEEecCCeEEEEEcCCcEEE
Q 001721 286 NVELVACGE-HHTCAVTLSGDMYT-WGGSNCNFGLLGHGNEMSLWLPKKLNGPLEGIHVSSVSCGPWHTAVVTSAGQLFT 363 (1020)
Q Consensus 286 ~I~~VacG~-~ht~aLT~dG~Vys-WG~n~~~~GqLG~g~~~~~~~P~~I~~~l~~~~Iv~VacG~~Hs~aLt~~G~Vy~ 363 (1020)
.+.+|++|. .-..+||.+|.||. -|-. ...+.|..-. ....|+.. ..++.|+.|....-+||.+|.||.
T Consensus 228 ~L~qISagPtg~VwAvt~nG~vf~R~GVs--RqNp~GdsWk-dI~tP~~a------~~~v~iSvGt~t~Waldndg~lwf 298 (705)
T KOG3669|consen 228 DLSQISAGPTGVVWAVTENGAVFYREGVS--RQNPEGDSWK-DIVTPRQA------LEPVCISVGTQTLWALDNDGNLWF 298 (705)
T ss_pred ccceEeecCcceEEEEeeCCcEEEEeccc--ccCCCCchhh-hccCcccc------cceEEEEeccceEEEEecCCcEEE
Confidence 588999999 67789999999864 4433 3444443322 23333332 239999999999999999999985
Q ss_pred e
Q 001721 364 F 364 (1020)
Q Consensus 364 w 364 (1020)
-
T Consensus 299 r 299 (705)
T KOG3669|consen 299 R 299 (705)
T ss_pred E
Confidence 4
No 46
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=82.73 E-value=4.8 Score=45.37 Aligned_cols=53 Identities=23% Similarity=0.404 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhC
Q 001721 794 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTAQLKDMAEML 860 (1020)
Q Consensus 794 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~eE~~k~~aake~iksl~~qlk~~~e~l 860 (1020)
.+||.+|.+||-.|.++|.+.-.|-+++.+.+.+ +||.=..|+++|+||-+|-
T Consensus 233 QEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~--------------ske~Q~~L~aEL~elqdkY 285 (306)
T PF04849_consen 233 QEEITSLLSQIVDLQQRCKQLAAENEELQQHLQA--------------SKESQRQLQAELQELQDKY 285 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHH
Confidence 6677777777777778877777777777777766 8888899999999988773
No 47
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=82.31 E-value=4.3 Score=41.93 Aligned_cols=63 Identities=22% Similarity=0.394 Sum_probs=44.6
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhCC
Q 001721 787 VDDAKRTSEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTAQLKDMAEMLP 861 (1020)
Q Consensus 787 ~~~l~~~~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~eE~~k~~aake~iksl~~qlk~~~e~lp 861 (1020)
.+++.....|+..|+.|+..|+..+..++.||..+.+.+-. +| +.+-|+.|..++++|.+||=
T Consensus 71 ~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~------~e------l~~~i~~l~~e~~~l~~kL~ 133 (169)
T PF07106_consen 71 PEELAELDAEIKELREELAELKKEVKSLEAELASLSSEPTN------EE------LREEIEELEEEIEELEEKLE 133 (169)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCH------HH------HHHHHHHHHHHHHHHHHHHH
Confidence 35566667779999999999999999999999888887743 22 33455555555555555553
No 48
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=81.50 E-value=12 Score=35.54 Aligned_cols=77 Identities=19% Similarity=0.261 Sum_probs=64.0
Q ss_pred chhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhCC
Q 001721 785 IVVDDAKRTSEEVIKLRAQVEELTRKSQLQEIELERTTRQ---LKEALAVAGEETAKCRAAKDVIKSLTAQLKDMAEMLP 861 (1020)
Q Consensus 785 ~~~~~l~~~~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~---~~ea~~~a~eE~~k~~aake~iksl~~qlk~~~e~lp 861 (1020)
...|++.+.-++..+|+.+++.|+.+.-....+|...+++ +++..+-+.+=..+.++..+-++.+..+|.++.-.||
T Consensus 26 ~~vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~~l~~iP 105 (108)
T PF02403_consen 26 EDVDEIIELDQERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKELEEELNELLLSIP 105 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 4567777668888889999999999999999999988884 6677777777777788899999999999999999888
No 49
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=81.16 E-value=5.8 Score=47.28 Aligned_cols=72 Identities=19% Similarity=0.294 Sum_probs=42.2
Q ss_pred chhhhhhhh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH---HHHHhhhhhHHHHHHHHHHHHHHH
Q 001721 785 IVVDDAKRT-----SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVA---GEETAKCRAAKDVIKSLTAQLKDM 856 (1020)
Q Consensus 785 ~~~~~l~~~-----~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a---~eE~~k~~aake~iksl~~qlk~~ 856 (1020)
.+.++++++ +.++++|-.|-..|..+.+.+..|..+..|++..+..-. .+--++.|+.|+-||.|.++++++
T Consensus 13 ~v~~~l~~R~~~~~vd~i~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~ 92 (425)
T PRK05431 13 AVKEALAKRGFPLDVDELLELDEERRELQTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEEIKALEAELDEL 92 (425)
T ss_pred HHHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555 567777777777777777777777777777776532211 111223344555566665555544
No 50
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=80.95 E-value=6.9 Score=42.74 Aligned_cols=68 Identities=25% Similarity=0.324 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhCCCcc
Q 001721 794 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTAQLKDMAEMLPVGA 864 (1020)
Q Consensus 794 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~eE~~k~~aake~iksl~~qlk~~~e~lp~~~ 864 (1020)
..|+..|...++.|+.+.+.+..+|.+.++.+-++-....+|.++ +.+....+-.|-.++.++|||..
T Consensus 109 e~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~---i~e~~~~~~~~~~~L~~~l~~el 176 (239)
T COG1579 109 EDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAE---IREEGQELSSKREELKEKLDPEL 176 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhcCHHH
Confidence 556666666666666666666666666666666766666666666 77888888889999999999985
No 51
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=80.38 E-value=7.8 Score=37.97 Aligned_cols=55 Identities=16% Similarity=0.277 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhh
Q 001721 794 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTAQLKDMAEM 859 (1020)
Q Consensus 794 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~eE~~k~~aake~iksl~~qlk~~~e~ 859 (1020)
--|+..|+.|+..|.++-+.+..||-++.+..+ ..++++.-+..|..+|+++-.|
T Consensus 29 E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e-----------~~~~~~~~~~~L~~el~~l~~r 83 (120)
T PF12325_consen 29 EGELASLQEELARLEAERDELREEIVKLMEENE-----------ELRALKKEVEELEQELEELQQR 83 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444443333 3455555566666666666554
No 52
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=80.23 E-value=10 Score=40.80 Aligned_cols=61 Identities=26% Similarity=0.372 Sum_probs=46.9
Q ss_pred HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 001721 794 SEEVIKLRAQV-------EELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTAQLKDM 856 (1020)
Q Consensus 794 ~qev~~l~~qv-------~~L~~~~~~~~~ei~~~~~~~~ea~~~a~eE~~k~~aake~iksl~~qlk~~ 856 (1020)
|+|..+|+.|. +.+.++.+.++.++++.+.+++||..--..=+. ++.+++++.|...|+++
T Consensus 42 nee~~eLk~qnkli~K~l~ei~~~qd~reK~~~~I~ssL~eTtkdf~~~~~--k~~~dF~~~Lq~~Lk~V 109 (230)
T PF03904_consen 42 NEEIQELKRQNKLIIKYLSEIEEKQDIREKNLKEIKSSLEETTKDFIDKTE--KVHNDFQDILQDELKDV 109 (230)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhh
Confidence 88888888864 577888888889999999999987765554433 45678888888877765
No 53
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=79.92 E-value=12 Score=37.91 Aligned_cols=39 Identities=31% Similarity=0.337 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 001721 794 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVA 832 (1020)
Q Consensus 794 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a 832 (1020)
.++..++-.+|.+|.++..+++.+|.++..+++++-..+
T Consensus 27 e~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~l 65 (143)
T PF12718_consen 27 EQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKL 65 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555666666666666666666666655554443
No 54
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=79.75 E-value=10 Score=38.26 Aligned_cols=37 Identities=19% Similarity=0.308 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 001721 794 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALA 830 (1020)
Q Consensus 794 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~ 830 (1020)
-+||..|+..+..|..+++..+.+|+.++.+++++-.
T Consensus 34 E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~ 70 (143)
T PF12718_consen 34 EQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEK 70 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 5556666665555555555555555555555555443
No 55
>PHA01750 hypothetical protein
Probab=79.49 E-value=4.8 Score=34.59 Aligned_cols=33 Identities=27% Similarity=0.404 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 001721 794 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLK 826 (1020)
Q Consensus 794 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ 826 (1020)
++|..+|+.|++.++.+-+.+++++++.++|+.
T Consensus 41 ~~ELdNL~~ei~~~kikqDnl~~qv~eik~k~d 73 (75)
T PHA01750 41 NSELDNLKTEIEELKIKQDELSRQVEEIKRKLD 73 (75)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhc
Confidence 899999999999999999999999999998875
No 56
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=79.32 E-value=0.93 Score=55.95 Aligned_cols=53 Identities=42% Similarity=0.711 Sum_probs=44.0
Q ss_pred hhhhccCCCCccccceEEEEecCc--ccceeecCcccchhhhhhhHhhhcCCccC
Q 001721 4 QPIFQRYPRPEKEYQSFSLIYNDR--SLDLICKDKDEAEVWFTGLKALISRSHYR 56 (1020)
Q Consensus 4 ~~~~~~~~~~~~~~~sfsl~~~~~--~ld~ickd~~~~~~w~~~l~~~~~~~~~~ 56 (1020)
|-.++|+.+---+..-||+||++| +||||--.|++|..|..||+.||+.....
T Consensus 74 t~~lr~~~~~~~~~~~fsi~~~~~~e~ldl~a~s~~~a~~wV~gl~~l~s~~~~~ 128 (746)
T KOG0169|consen 74 TENLRSLARDLPEDRCFSIIFKDRYESLDLIANSKEDANIWVSGLRKLISRSKSM 128 (746)
T ss_pred chhhHHHHHhcCcceeEEEEeccccccccccCCCHHHHHHHhhhHHHHHhccchh
Confidence 455666555556778999999776 99999999999999999999999986533
No 57
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=79.32 E-value=16 Score=43.78 Aligned_cols=71 Identities=21% Similarity=0.205 Sum_probs=49.1
Q ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhCCCcc
Q 001721 794 SEEVIKLRA----QVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTAQLKDMAEMLPVGA 864 (1020)
Q Consensus 794 ~qev~~l~~----qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~eE~~k~~aake~iksl~~qlk~~~e~lp~~~ 864 (1020)
+.|+.+.++ |...|+-|.+++..||+++..|++|--.+--.|--...+.|-+|..-..|++|+.|+--|..
T Consensus 81 ~~e~~RI~~sVs~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~~~n~pkl 155 (907)
T KOG2264|consen 81 LREQKRILASVSLELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEELRETNNPKL 155 (907)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHhhcCCce
Confidence 566666666 45566666666777777777777665544444444456688899999999999988765553
No 58
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=79.22 E-value=10 Score=35.96 Aligned_cols=65 Identities=28% Similarity=0.310 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhC
Q 001721 796 EVIKLRAQVEELTRKSQLQEIELERTTRQL-KEALAVAGEETAKCRAAKDVIKSLTAQLKDMAEML 860 (1020)
Q Consensus 796 ev~~l~~qv~~L~~~~~~~~~ei~~~~~~~-~ea~~~a~eE~~k~~aake~iksl~~qlk~~~e~l 860 (1020)
++..-+++...+.+..+..+.||+.+...| +||-.|+++|---+-+++.=...|..||++...+|
T Consensus 2 ~l~~e~~~r~~ae~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~k~~~le~~l~e~~~~l 67 (100)
T PF06428_consen 2 ELEEERERREEAEQEKEQIESELEELTASLFEEANKMVADARRERAALEEKNEQLEKQLKEKEALL 67 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTHHCHCC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455677788888899999999999998 99999998877555555555566666666655444
No 59
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=78.83 E-value=17 Score=36.73 Aligned_cols=58 Identities=19% Similarity=0.244 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 001721 794 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTA 851 (1020)
Q Consensus 794 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~eE~~k~~aake~iksl~~ 851 (1020)
..|+.+|...++.|+.+++..+.|+...+.+...+-.-...+..+.|..||-+.-|..
T Consensus 65 ~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~ 122 (151)
T PF11559_consen 65 RSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKN 122 (151)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445555555555555555555555544444444444444444555544444433
No 60
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=78.03 E-value=11 Score=44.83 Aligned_cols=71 Identities=17% Similarity=0.249 Sum_probs=38.3
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhh-hhh-------HHHHHHHHHHHHHHHhh
Q 001721 788 DDAKRTSEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAK-CRA-------AKDVIKSLTAQLKDMAE 858 (1020)
Q Consensus 788 ~~l~~~~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~eE~~k-~~a-------ake~iksl~~qlk~~~e 858 (1020)
-.+|+...|+.+|.+|-+.|+++-+.+...-+...++++.|+.-++.|..+ ... .+..|..|+.||+.+..
T Consensus 66 a~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l~~~l~~~~~ 144 (472)
T TIGR03752 66 AEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQLQRRLAGVLT 144 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 333433555555555555555555555555555566777777665555442 222 34445555556655544
No 61
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=76.55 E-value=9.6 Score=45.33 Aligned_cols=62 Identities=19% Similarity=0.264 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH----HHHhhhhhHHHHHHHHHHHHHHH
Q 001721 795 EEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAG----EETAKCRAAKDVIKSLTAQLKDM 856 (1020)
Q Consensus 795 qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~----eE~~k~~aake~iksl~~qlk~~ 856 (1020)
.+++.|-.|-..|..+.+.+..|..+..|++.+...-.. +=.++.|..|+-||.|..+++++
T Consensus 30 d~i~~ld~~~r~~~~~~~~l~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~ 95 (418)
T TIGR00414 30 EKLIALDDERKKLLSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELSAALKAL 95 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555556666666666666666666666655321111 11123345566666666655554
No 62
>PLN02678 seryl-tRNA synthetase
Probab=76.06 E-value=9.8 Score=45.56 Aligned_cols=73 Identities=16% Similarity=0.280 Sum_probs=44.6
Q ss_pred cchhhhhhhh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH----HhhhhhHHHHHHHHHHHH
Q 001721 784 KIVVDDAKRT------SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEE----TAKCRAAKDVIKSLTAQL 853 (1020)
Q Consensus 784 ~~~~~~l~~~------~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~eE----~~k~~aake~iksl~~ql 853 (1020)
+.+...++++ +.|+++|-.|-..|..+.+.+..|.....|++.... ...|+ .++.+..|+-|+.|.+++
T Consensus 16 ~~v~~~l~~R~~~~~~id~il~ld~~~r~l~~~~e~lr~erN~~sk~I~~~k-~~~~~~~~l~~~~~~Lk~ei~~le~~~ 94 (448)
T PLN02678 16 ELIRESQRRRFASVELVDEVIALDKEWRQRQFELDSLRKEFNKLNKEVAKLK-IAKEDATELIAETKELKKEITEKEAEV 94 (448)
T ss_pred HHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555 466777777777777777777777777777775422 11222 234556677777777666
Q ss_pred HHHh
Q 001721 854 KDMA 857 (1020)
Q Consensus 854 k~~~ 857 (1020)
+++.
T Consensus 95 ~~~~ 98 (448)
T PLN02678 95 QEAK 98 (448)
T ss_pred HHHH
Confidence 5543
No 63
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=75.60 E-value=8 Score=51.87 Aligned_cols=71 Identities=11% Similarity=0.088 Sum_probs=45.0
Q ss_pred CCeeEEEeeCcEE-EEEecCCcEEEEeCCCCCCCCCCCCCCCcceeeccccCCCcEEEEEecCcEEEEEeCCC
Q 001721 456 PNFCQVSCGHSLT-VALTTTGHVYTMGSPVYGQLGDPKANGKLPTRVEGKLTKNFVEEIACGDYHVAVLTSRT 527 (1020)
Q Consensus 456 ~~I~~Ia~G~~ht-laLT~dG~Vy~wG~N~~GQLG~~~~~~~~P~~v~~~l~~~~I~~Ia~G~~HslaLTsdG 527 (1020)
-.|++|++-..|. +|||.+|+||..=.-.+-..-.+........+|.. ..+..|..+....+|.+.+.-++
T Consensus 744 G~ik~l~lD~~~nL~Alt~~G~Lf~~~k~~WQ~~~~~~~~~~~W~~v~l-P~~~~v~~l~~~~~~~l~~~~~d 815 (1774)
T PF11725_consen 744 GEIKDLALDEKQNLYALTSTGELFRLPKEAWQGNAEGDQMAAKWQKVAL-PDEQPVKSLRTNDDNHLSAQIED 815 (1774)
T ss_pred cchhheeeccccceeEecCCCceeecCHHHhhCcccCCccccCceeccC-CCCCchhhhhcCCCCceEEEecC
Confidence 5899999998875 58999999997654332221112111122233332 24567999999999988876544
No 64
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=74.95 E-value=8.5 Score=43.97 Aligned_cols=31 Identities=32% Similarity=0.350 Sum_probs=25.6
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHhhhCCCc
Q 001721 833 GEETAKCRAAKDVIKSLTAQLKDMAEMLPVG 863 (1020)
Q Consensus 833 ~eE~~k~~aake~iksl~~qlk~~~e~lp~~ 863 (1020)
.||.+..+..++-||....++.||..-||..
T Consensus 64 ~e~~~~i~~L~~~Ik~r~~~l~DmEa~LPkk 94 (330)
T PF07851_consen 64 AEERELIEKLEEDIKERRCQLFDMEAFLPKK 94 (330)
T ss_pred hhHHHHHHHHHHHHHHHHhhHHHHHhhCCCC
Confidence 3677777788888888888999999888875
No 65
>PLN02320 seryl-tRNA synthetase
Probab=74.82 E-value=16 Score=44.18 Aligned_cols=71 Identities=15% Similarity=0.214 Sum_probs=43.8
Q ss_pred cchhhhhhhh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH----hhhhhHHHHHHHHHHHHH
Q 001721 784 KIVVDDAKRT-----SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEET----AKCRAAKDVIKSLTAQLK 854 (1020)
Q Consensus 784 ~~~~~~l~~~-----~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~eE~----~k~~aake~iksl~~qlk 854 (1020)
+.+.++++++ ++|+++|-.+-..|..+.+.+..|..+..|++++. ...+|. ++.|..|+-|+.|..+++
T Consensus 77 ~~v~~~l~~R~~~~~vd~l~~ld~~~r~~~~~~~~lr~ern~~sk~i~~~--~~~~~~~~l~~~~k~lk~~i~~le~~~~ 154 (502)
T PLN02320 77 EAVAINIRNRNSNANLELVLELYENMLALQKEVERLRAERNAVANKMKGK--LEPSERQALVEEGKNLKEGLVTLEEDLV 154 (502)
T ss_pred HHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555 57777787788888888888888888777777651 111111 233455666666665544
Q ss_pred HH
Q 001721 855 DM 856 (1020)
Q Consensus 855 ~~ 856 (1020)
++
T Consensus 155 ~~ 156 (502)
T PLN02320 155 KL 156 (502)
T ss_pred HH
Confidence 44
No 66
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=73.63 E-value=1.3e+02 Score=38.68 Aligned_cols=13 Identities=8% Similarity=0.015 Sum_probs=5.7
Q ss_pred EEEecCCcceeee
Q 001721 564 SIVCGTSFTAAIC 576 (1020)
Q Consensus 564 ~IacG~~~T~aL~ 576 (1020)
.+|.|-|.-++|.
T Consensus 30 ~FA~G~WvGVvLD 42 (1243)
T KOG0971|consen 30 QFAEGKWVGVVLD 42 (1243)
T ss_pred ccccCceEEEEec
Confidence 3444444444443
No 67
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only]
Probab=73.61 E-value=1.1e+02 Score=37.44 Aligned_cols=107 Identities=19% Similarity=0.161 Sum_probs=65.8
Q ss_pred ecCCeEEEEEcCCcEEEeccCCCCcCCCCCCccc-ccceeeccCCCCeEEEEecCC-ceEEEEEEeeecCcccccCCCCc
Q 001721 347 CGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRISV-STPREVDSLKGLRTVRAACGV-WHTAAVVEVMVGSSSSSNCSSGK 424 (1020)
Q Consensus 347 cG~~Hs~aLt~~G~Vy~wG~N~~GQLG~g~~~~~-~~P~~V~~l~~~~I~~IacG~-~ht~aLtE~~~~~~~~~~~~~G~ 424 (1020)
.|.....||..+|.||-= -|.....+. ..-+.|... ..+.+|++|. .-..+|++ +|.
T Consensus 190 ~g~~~awAI~s~Gd~y~R-------tGvs~~~P~GraW~~i~~~--t~L~qISagPtg~VwAvt~------------nG~ 248 (705)
T KOG3669|consen 190 LGDDTAWAIRSSGDLYLR-------TGVSVDRPCGRAWKVICPY--TDLSQISAGPTGVVWAVTE------------NGA 248 (705)
T ss_pred CCceEEEEEecCCcEEEe-------ccccCCCCCCceeeecCCC--CccceEeecCcceEEEEee------------CCc
Confidence 566677888999988842 122111110 011111111 1478899998 56667774 777
Q ss_pred EE-EecCCCCCCcCCCCCCcceecEEeeccCCCCeeEEEeeCcEEEEEecCCcEEEE
Q 001721 425 LF-TWGDGDRGRLGHGDKEARLVPTCVAALVEPNFCQVSCGHSLTVALTTTGHVYTM 480 (1020)
Q Consensus 425 Ly-~WG~n~~GQLG~g~~~~~~~Pt~V~~l~~~~I~~Ia~G~~htlaLT~dG~Vy~w 480 (1020)
|| --|-....+.|..-+ ....|... ..++.|+.|.....+||.+|+||.-
T Consensus 249 vf~R~GVsRqNp~GdsWk-dI~tP~~a-----~~~v~iSvGt~t~Waldndg~lwfr 299 (705)
T KOG3669|consen 249 VFYREGVSRQNPEGDSWK-DIVTPRQA-----LEPVCISVGTQTLWALDNDGNLWFR 299 (705)
T ss_pred EEEEecccccCCCCchhh-hccCcccc-----cceEEEEeccceEEEEecCCcEEEE
Confidence 54 567666666665443 33333332 2389999999999999999999864
No 68
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=73.06 E-value=20 Score=38.13 Aligned_cols=67 Identities=22% Similarity=0.310 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH----HHHHHHHhhhhhHHHHHHHHHHHHHHHhhhC
Q 001721 794 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEAL----AVAGEETAKCRAAKDVIKSLTAQLKDMAEML 860 (1020)
Q Consensus 794 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~----~~a~eE~~k~~aake~iksl~~qlk~~~e~l 860 (1020)
.-|-.+|..+++.++.+.+..+.+|+.+.++++-+- ....-|-.|.++|.+-++.|..+++.+--+|
T Consensus 117 L~eReeL~~kL~~~~~~l~~~~~ki~~Lek~leL~~k~~~rql~~e~kK~~~~~~~~~~l~~ei~~L~~kl 187 (194)
T PF15619_consen 117 LAEREELQRKLSQLEQKLQEKEKKIQELEKQLELENKSFRRQLASEKKKHKEAQEEVKSLQEEIQRLNQKL 187 (194)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666778888888888888888888887544 3445677788888888888888777765544
No 69
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=72.86 E-value=76 Score=39.43 Aligned_cols=60 Identities=15% Similarity=0.149 Sum_probs=31.7
Q ss_pred EEecCCcEEEEeCCCCCCCCCCCCCCCcceeeccccCCCcEEEEEecCcEEEEEeCCCeEEEEeC
Q 001721 470 ALTTTGHVYTMGSPVYGQLGDPKANGKLPTRVEGKLTKNFVEEIACGDYHVAVLTSRTEVYTWGK 534 (1020)
Q Consensus 470 aLT~dG~Vy~wG~N~~GQLG~~~~~~~~P~~v~~~l~~~~I~~Ia~G~~HslaLTsdG~VytWG~ 534 (1020)
+..-+|.||+.|..+. +......+..-|.. ..-..+.....+..+..+..-+|++|+-|.
T Consensus 471 ~a~~~~~iYvvGG~~~-~~~~~~VE~ydp~~----~~W~~v~~m~~~rs~~g~~~~~~~ly~vGG 530 (571)
T KOG4441|consen 471 VAVLNGKIYVVGGFDG-TSALSSVERYDPET----NQWTMVAPMTSPRSAVGVVVLGGKLYAVGG 530 (571)
T ss_pred EEEECCEEEEECCccC-CCccceEEEEcCCC----CceeEcccCccccccccEEEECCEEEEEec
Confidence 4556889999995443 11111000001110 001113334556677777778999999985
No 70
>PRK11637 AmiB activator; Provisional
Probab=72.51 E-value=22 Score=42.44 Aligned_cols=33 Identities=21% Similarity=0.292 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 001721 794 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLK 826 (1020)
Q Consensus 794 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ 826 (1020)
.+|+.+++.+...+.++.+.++.+|+.+.+++.
T Consensus 60 ~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~ 92 (428)
T PRK11637 60 EKSVRQQQQQRASLLAQLKKQEEAISQASRKLR 92 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444443
No 71
>KOG4552 consensus Vitamin-D-receptor interacting protein complex component [Transcription]
Probab=72.07 E-value=22 Score=37.49 Aligned_cols=53 Identities=19% Similarity=0.260 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 001721 795 EEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLT 850 (1020)
Q Consensus 795 qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~eE~~k~~aake~iksl~ 850 (1020)
.|-.|....+..|+.+.|.+|.+||+++|++|+|-.+-+ .-|=-|++-+|++.
T Consensus 67 ~eq~k~e~~m~~Lea~VEkrD~~IQqLqk~LK~aE~iLt---ta~fqA~qKLksi~ 119 (272)
T KOG4552|consen 67 PEQQKREQLMRTLEAHVEKRDEVIQQLQKNLKSAEVILT---TACFQANQKLKSIK 119 (272)
T ss_pred HhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 333344446778889999999999999999999754432 22445666666554
No 72
>PRK11637 AmiB activator; Provisional
Probab=71.52 E-value=21 Score=42.54 Aligned_cols=45 Identities=11% Similarity=0.163 Sum_probs=24.1
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 001721 788 DDAKRTSEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVA 832 (1020)
Q Consensus 788 ~~l~~~~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a 832 (1020)
+.|++..+++.+++.++..++++....+.+|..+.++++++-.-.
T Consensus 47 ~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i 91 (428)
T PRK11637 47 DQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKL 91 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333555555555555555555555555655555555554433
No 73
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=71.47 E-value=37 Score=38.56 Aligned_cols=51 Identities=29% Similarity=0.357 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhC
Q 001721 803 QVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTAQLKDMAEML 860 (1020)
Q Consensus 803 qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~eE~~k~~aake~iksl~~qlk~~~e~l 860 (1020)
||..|+.+++.++..+-.++++++|-.. | +..-|+.+..|+.++.++.+.|
T Consensus 113 qvd~Lkd~lee~eE~~~~~~re~~eK~~----e---lEr~K~~~d~L~~e~~~Lre~L 163 (302)
T PF09738_consen 113 QVDLLKDKLEELEETLAQLQREYREKIR----E---LERQKRAHDSLREELDELREQL 163 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----H---HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998875321 1 3446788888888777776666
No 74
>cd00821 PH Pleckstrin homology (PH) domain. Pleckstrin homology (PH) domain. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=71.38 E-value=2.9 Score=36.75 Aligned_cols=38 Identities=26% Similarity=0.460 Sum_probs=32.6
Q ss_pred CCCccccceEEEEecC-cccceeecCcccchhhhhhhHh
Q 001721 11 PRPEKEYQSFSLIYND-RSLDLICKDKDEAEVWFTGLKA 48 (1020)
Q Consensus 11 ~~~~~~~~sfsl~~~~-~~ld~ickd~~~~~~w~~~l~~ 48 (1020)
+.+++....|.|+... +.+.|.|++..|++-|+..|+.
T Consensus 57 ~~~~~~~~~f~i~~~~~~~~~~~~~s~~~~~~W~~~l~~ 95 (96)
T cd00821 57 PDDSGRKNCFEIRTPDGRSYLLQAESEEEREEWIEALQS 95 (96)
T ss_pred CCcCCCCcEEEEecCCCcEEEEEeCCHHHHHHHHHHHhc
Confidence 3444467899999976 9999999999999999999975
No 75
>PRK09039 hypothetical protein; Validated
Probab=71.16 E-value=15 Score=42.64 Aligned_cols=50 Identities=20% Similarity=0.201 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhHH
Q 001721 794 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAK 843 (1020)
Q Consensus 794 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~eE~~k~~aak 843 (1020)
..+|..|++|+++|+.|+..++.+|..++++.+++-..-.+=-++..+|+
T Consensus 136 ~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~ 185 (343)
T PRK09039 136 LAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVAL 185 (343)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77789999999999999999998888888887665444333333333343
No 76
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=70.66 E-value=15 Score=39.78 Aligned_cols=77 Identities=19% Similarity=0.247 Sum_probs=44.4
Q ss_pred CCcEEEEEecCCEEEEEEeCCcEEEeCCCCCCCcccCCCCCcceeccee----eCCCCCCCcEEEEEecCC-eEEEEEcC
Q 001721 284 NINVELVACGEHHTCAVTLSGDMYTWGGSNCNFGLLGHGNEMSLWLPKK----LNGPLEGIHVSSVSCGPW-HTAVVTSA 358 (1020)
Q Consensus 284 ~~~I~~VacG~~ht~aLT~dG~VysWG~n~~~~GqLG~g~~~~~~~P~~----I~~~l~~~~Iv~VacG~~-Hs~aLt~~ 358 (1020)
+.++..+.|-..+.++||.+|.+|+|--. . +.+-+... ...|.. .........|+.+..... .-++..++
T Consensus 12 gs~~~~l~~~~~~Ll~iT~~G~l~vWnl~--~-~k~~~~~~--Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsn 86 (219)
T PF07569_consen 12 GSPVSFLECNGSYLLAITSSGLLYVWNLK--K-GKAVLPPV--SIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSN 86 (219)
T ss_pred CCceEEEEeCCCEEEEEeCCCeEEEEECC--C-CeeccCCc--cHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeC
Confidence 35788899999999999999999999544 1 11111110 001100 000012345666655433 45566678
Q ss_pred CcEEEec
Q 001721 359 GQLFTFG 365 (1020)
Q Consensus 359 G~Vy~wG 365 (1020)
|+.|+|-
T Consensus 87 g~~y~y~ 93 (219)
T PF07569_consen 87 GDSYSYS 93 (219)
T ss_pred CCEEEec
Confidence 8999884
No 77
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=70.57 E-value=82 Score=41.93 Aligned_cols=217 Identities=17% Similarity=0.136 Sum_probs=108.7
Q ss_pred EEEEcCCeEEEEeCCCCCccCCCCCC--CCCcceEeeccCCCcEEEEEecCCEEEEEEeCCcEEEeCCCCCCCcccCCCC
Q 001721 246 ALVTKQGEVFSWGEELGGRLGHGVDS--DVSHPKLIDALKNINVELVACGEHHTCAVTLSGDMYTWGGSNCNFGLLGHGN 323 (1020)
Q Consensus 246 ~~Lt~dG~Vy~wG~N~~GqLG~g~~~--~~~~P~~V~~l~~~~I~~VacG~~ht~aLT~dG~VysWG~n~~~~GqLG~g~ 323 (1020)
+-+|-|.++|.|-.|..+++-.=+.. .+..-.+++.-.|+-+..| .|.++|..--+|+..|-.. .....+...
T Consensus 93 aWiTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~I----qhlLvvaT~~ei~ilgV~~-~~~~~~~~~ 167 (1311)
T KOG1900|consen 93 AWITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEI----QHLLVVATPVEIVILGVSF-DEFTGELSI 167 (1311)
T ss_pred eEEEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhh----heeEEecccceEEEEEEEe-ccccCcccc
Confidence 56899999999999887766322111 1112222222223222222 5889999999999888431 111222111
Q ss_pred CcceecceeeCCCCCCCcEEEEEecCCeEEEEE-cCCcEEEe----ccCCCCcCCCC-----CCcccccceeecc--CCC
Q 001721 324 EMSLWLPKKLNGPLEGIHVSSVSCGPWHTAVVT-SAGQLFTF----GDGTFGVLGHG-----DRISVSTPREVDS--LKG 391 (1020)
Q Consensus 324 ~~~~~~P~~I~~~l~~~~Iv~VacG~~Hs~aLt-~~G~Vy~w----G~N~~GQLG~g-----~~~~~~~P~~V~~--l~~ 391 (1020)
.... +.-+.+|..|..|.+-.+-=++++ .+|.||-. +++.|+.-.+. .......|..+.. ...
T Consensus 168 f~~~-----~~i~~dg~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~ 242 (1311)
T KOG1900|consen 168 FNTS-----FKISVDGVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSK 242 (1311)
T ss_pred cccc-----eeeecCCceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCC
Confidence 1111 222345666777776555445444 66665433 34445541111 1112234542221 224
Q ss_pred CeEEEEecCCceEEEEEEeeecCcccccCCCCcEEEecCCCCCCcCCCCCCc---------ceecEEeeccCCCCeeEEE
Q 001721 392 LRTVRAACGVWHTAAVVEVMVGSSSSSNCSSGKLFTWGDGDRGRLGHGDKEA---------RLVPTCVAALVEPNFCQVS 462 (1020)
Q Consensus 392 ~~I~~IacG~~ht~aLtE~~~~~~~~~~~~~G~Ly~WG~n~~GQLG~g~~~~---------~~~Pt~V~~l~~~~I~~Ia 462 (1020)
..|.+|+-+....+..+- ...|.+-+|--+..|+-+.-.... ...-..+....-..|++|+
T Consensus 243 dpI~qi~ID~SR~IlY~l----------sek~~v~~Y~i~~~G~~~~r~~~~~~~~i~~qa~~~~~~~~~s~f~~IvsI~ 312 (1311)
T KOG1900|consen 243 DPIRQITIDNSRNILYVL----------SEKGTVSAYDIGGNGLGGPRFVSVSRNYIDVQALSLKNPLDDSVFFSIVSIS 312 (1311)
T ss_pred CcceeeEeccccceeeee----------ccCceEEEEEccCCCccceeeeehhHHHHHHHhhhccccCCCcccceeEEec
Confidence 578999988888777652 246777666554444433211000 0000000000112344443
Q ss_pred ------eeCcEEEEEecCC-cEEEEeC
Q 001721 463 ------CGHSLTVALTTTG-HVYTMGS 482 (1020)
Q Consensus 463 ------~G~~htlaLT~dG-~Vy~wG~ 482 (1020)
.-+-|.+|+|..| ++|.-|+
T Consensus 313 ~l~~~es~~l~LvA~ts~GvRlYfs~s 339 (1311)
T KOG1900|consen 313 PLSASESNDLHLVAITSTGVRLYFSTS 339 (1311)
T ss_pred ccCcccccceeEEEEecCCeEEEEecc
Confidence 3456899999999 5776664
No 78
>PRK00846 hypothetical protein; Provisional
Probab=69.83 E-value=47 Score=30.04 Aligned_cols=55 Identities=24% Similarity=0.298 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhCCCc
Q 001721 802 AQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTAQLKDMAEMLPVG 863 (1020)
Q Consensus 802 ~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~eE~~k~~aake~iksl~~qlk~~~e~lp~~ 863 (1020)
+.+..|+-+.-.||.-|+.+.+.+-+-+ .+..+ -++-|+-|+.+||+|....+..
T Consensus 13 ~Ri~~LE~rlAfQe~tIe~LN~~v~~qq----~~I~~---L~~ql~~L~~rL~~~~~s~~~~ 67 (77)
T PRK00846 13 ARLVELETRLSFQEQALTELSEALADAR----LTGAR---NAELIRHLLEDLGKVRSTLFAD 67 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHH---HHHHHHHHHHHHHHhccccCCC
Confidence 3455555555555555555444433322 22222 5666777888888887665443
No 79
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=69.71 E-value=18 Score=37.12 Aligned_cols=62 Identities=19% Similarity=0.332 Sum_probs=43.5
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhC
Q 001721 787 VDDAKRTSEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTAQLKDMAEML 860 (1020)
Q Consensus 787 ~~~l~~~~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~eE~~k~~aake~iksl~~qlk~~~e~l 860 (1020)
..+|...-.++.+|.++|.+|.+.|.-.|.||..+.+-|- .||. -|-|-+|....++|.|||
T Consensus 78 ~eel~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt------~eem------Qe~i~~L~kev~~~~erl 139 (201)
T KOG4603|consen 78 DEELQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSALT------TEEM------QEEIQELKKEVAGYRERL 139 (201)
T ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC------hHHH------HHHHHHHHHHHHHHHHHH
Confidence 3556666889999999999999999999999988776442 2332 234455555555555554
No 80
>PHA03098 kelch-like protein; Provisional
Probab=69.57 E-value=1.5e+02 Score=36.13 Aligned_cols=17 Identities=18% Similarity=0.442 Sum_probs=11.9
Q ss_pred CEEEEEEeCCcEEEeCCC
Q 001721 295 HHTCAVTLSGDMYTWGGS 312 (1020)
Q Consensus 295 ~ht~aLT~dG~VysWG~n 312 (1020)
.|+++ .-+|+||++|..
T Consensus 335 ~~~~~-~~~~~lyv~GG~ 351 (534)
T PHA03098 335 NPGVT-VFNNRIYVIGGI 351 (534)
T ss_pred cceEE-EECCEEEEEeCC
Confidence 34444 458999999965
No 81
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=69.11 E-value=35 Score=35.77 Aligned_cols=67 Identities=18% Similarity=0.334 Sum_probs=43.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHh
Q 001721 791 KRTSEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTAQLKDMA 857 (1020)
Q Consensus 791 ~~~~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~eE~~k~~aake~iksl~~qlk~~~ 857 (1020)
.+..+.+.+|..+...+.+++..+..++...+....+.-..-.+.-+|.++.++.+|.+..++.++-
T Consensus 84 ~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 84 SELQQQLQQLQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3335555566666666666666666666666666666555555666666777777777777666665
No 82
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=69.06 E-value=60 Score=41.38 Aligned_cols=73 Identities=21% Similarity=0.230 Sum_probs=45.1
Q ss_pred ecCCEEEEEEeCCc-EEEeCCCCCCCcccCCCCCcce-ecceeeCCCCCCCcEEEEEecCCeEEEEEcCCc--EEEeccC
Q 001721 292 CGEHHTCAVTLSGD-MYTWGGSNCNFGLLGHGNEMSL-WLPKKLNGPLEGIHVSSVSCGPWHTAVVTSAGQ--LFTFGDG 367 (1020)
Q Consensus 292 cG~~ht~aLT~dG~-VysWG~n~~~~GqLG~g~~~~~-~~P~~I~~~l~~~~Iv~VacG~~Hs~aLt~~G~--Vy~wG~N 367 (1020)
.++...++++.+|+ |+++|.+ |.+-.-...+. ..|..|.. .+..|..|+|-..|.+.-++++. +|.++..
T Consensus 13 t~G~t~i~~d~~gefi~tcgsd----g~ir~~~~~sd~e~P~ti~~--~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps~ 86 (933)
T KOG1274|consen 13 TGGLTLICYDPDGEFICTCGSD----GDIRKWKTNSDEEEPETIDI--SGELVSSIACYSNHFLTGSEQNTVLRYKFPSG 86 (933)
T ss_pred cCceEEEEEcCCCCEEEEecCC----CceEEeecCCcccCCchhhc--cCceeEEEeecccceEEeeccceEEEeeCCCC
Confidence 34466677777775 6677755 22211111111 45655542 47789999999999999888885 5666655
Q ss_pred CCC
Q 001721 368 TFG 370 (1020)
Q Consensus 368 ~~G 370 (1020)
..+
T Consensus 87 ~~~ 89 (933)
T KOG1274|consen 87 EED 89 (933)
T ss_pred Ccc
Confidence 443
No 83
>PRK10869 recombination and repair protein; Provisional
Probab=68.75 E-value=18 Score=44.72 Aligned_cols=64 Identities=20% Similarity=0.257 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH---HHHH--hhhhhHHHHHHHHHHHHHHHh
Q 001721 794 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVA---GEET--AKCRAAKDVIKSLTAQLKDMA 857 (1020)
Q Consensus 794 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a---~eE~--~k~~aake~iksl~~qlk~~~ 857 (1020)
.+||+..+.+.+.=-+..+..+..+++++++++++..-. +++. ++.+||+++-+.++.+|++|.
T Consensus 319 ~~~~~~~~~~l~~eL~~L~~~e~~l~~Le~e~~~l~~~l~~~A~~LS~~R~~aA~~l~~~v~~~L~~L~ 387 (553)
T PRK10869 319 PEELPQHHQQLLEEQQQLDDQEDDLETLALAVEKHHQQALETAQKLHQSRQRYAKELAQLITESMHELS 387 (553)
T ss_pred HHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 566655555333222222233333444444443333222 2332 245789999999999999985
No 84
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=68.04 E-value=60 Score=28.71 Aligned_cols=59 Identities=34% Similarity=0.460 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH---HHHHHhhhhhHHHHHHHHHHHHHHH
Q 001721 795 EEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAV---AGEETAKCRAAKDVIKSLTAQLKDM 856 (1020)
Q Consensus 795 qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~---a~eE~~k~~aake~iksl~~qlk~~ 856 (1020)
+|+.-||.....|+++.+..+.++..+.+.-..|+.- |-+|..| -|+-+.+|..+|++.
T Consensus 5 a~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~---Lk~E~e~L~~el~~~ 66 (69)
T PF14197_consen 5 AEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNK---LKEENEALRKELEEL 66 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHh
Confidence 6788899999999999999999888888877766554 5555555 666667777777764
No 85
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=67.50 E-value=14 Score=32.66 Aligned_cols=31 Identities=26% Similarity=0.498 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001721 794 SEEVIKLRAQVEELTRKSQLQEIELERTTRQ 824 (1020)
Q Consensus 794 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~ 824 (1020)
.+|+..|+.|++.|+++-+.++.||+++++-
T Consensus 23 ~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~~ 53 (80)
T PF04977_consen 23 NQEIAELQKEIEELKKENEELKEEIERLKND 53 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 5666666666666666666666666666443
No 86
>PHA02713 hypothetical protein; Provisional
Probab=67.50 E-value=91 Score=38.59 Aligned_cols=20 Identities=15% Similarity=0.381 Sum_probs=13.9
Q ss_pred cCCEEEEEEeCCcEEEeCCC
Q 001721 293 GEHHTCAVTLSGDMYTWGGS 312 (1020)
Q Consensus 293 G~~ht~aLT~dG~VysWG~n 312 (1020)
...+..+..-+|+||++|..
T Consensus 341 ~R~~~~~~~~~g~IYviGG~ 360 (557)
T PHA02713 341 NRCRFSLAVIDDTIYAIGGQ 360 (557)
T ss_pred hhhceeEEEECCEEEEECCc
Confidence 34444555668999999965
No 87
>PHA03098 kelch-like protein; Provisional
Probab=66.32 E-value=2.5e+02 Score=34.17 Aligned_cols=14 Identities=36% Similarity=0.596 Sum_probs=10.4
Q ss_pred EEEeCCcEEEeCCC
Q 001721 299 AVTLSGDMYTWGGS 312 (1020)
Q Consensus 299 aLT~dG~VysWG~n 312 (1020)
++..++.||..|..
T Consensus 290 ~~~~~~~lyv~GG~ 303 (534)
T PHA03098 290 SVVLNNVIYFIGGM 303 (534)
T ss_pred EEEECCEEEEECCC
Confidence 44567899999854
No 88
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=66.08 E-value=31 Score=36.48 Aligned_cols=30 Identities=17% Similarity=0.272 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 001721 797 VIKLRAQVEELTRKSQLQEIELERTTRQLK 826 (1020)
Q Consensus 797 v~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ 826 (1020)
+..+..++..|+.+.+.++.+++.++.+.+
T Consensus 122 ~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e 151 (189)
T PF10211_consen 122 KQELEEEIEELEEEKEELEKQVQELKNKCE 151 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444433
No 89
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=65.42 E-value=28 Score=32.15 Aligned_cols=51 Identities=22% Similarity=0.332 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 001721 794 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLT 850 (1020)
Q Consensus 794 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~eE~~k~~aake~iksl~ 850 (1020)
.+|..+|.+|.+.|+.+-...+.|+.-.+-+-+- ||..+.-....||..|-
T Consensus 29 ~~~~~kL~~en~qlk~Ek~~~~~qvkn~~vrqkn------ee~~~~~sr~~V~d~L~ 79 (87)
T PF10883_consen 29 KKQNAKLQKENEQLKTEKAVAETQVKNAKVRQKN------EENTRRLSRDSVIDQLQ 79 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------HHhhccCCHHHHHHHHH
Confidence 4556666666666666666666666555555554 77888888888887774
No 90
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=65.22 E-value=38 Score=37.79 Aligned_cols=33 Identities=21% Similarity=0.336 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 001721 794 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLK 826 (1020)
Q Consensus 794 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ 826 (1020)
.+++.+++.+++.++++++.+..+|+..++.++
T Consensus 76 ~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~ 108 (302)
T PF10186_consen 76 RERIERLRKRIEQKRERLEELRESLEQRRSRLS 108 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555666666666666666655555444
No 91
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=64.83 E-value=42 Score=41.12 Aligned_cols=61 Identities=23% Similarity=0.287 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhHH---HHHHHHHHHHH
Q 001721 794 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAK---DVIKSLTAQLK 854 (1020)
Q Consensus 794 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~eE~~k~~aak---e~iksl~~qlk 854 (1020)
-.-|.+|+.|++.|+...++++.||++++.++.++-.-+..|.-|.+... +-|..|...|.
T Consensus 428 ~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~ 491 (652)
T COG2433 428 EETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELE 491 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 44467788888899999999999999999999988877777766655433 55666665444
No 92
>PRK02119 hypothetical protein; Provisional
Probab=64.60 E-value=60 Score=29.02 Aligned_cols=58 Identities=26% Similarity=0.244 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhh
Q 001721 795 EEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTAQLKDMAEM 859 (1020)
Q Consensus 795 qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~eE~~k~~aake~iksl~~qlk~~~e~ 859 (1020)
+|+..+.+.+..|+.+.-.|+.-|+.+.+-|-+-. .+..+ -+.-++.|..||+++...
T Consensus 2 ~~~~~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq----~~id~---L~~ql~~L~~rl~~~~~~ 59 (73)
T PRK02119 2 QIQQNLENRIAELEMKIAFQENLLEELNQALIEQQ----FVIDK---MQVQLRYMANKLKDMQPS 59 (73)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHH---HHHHHHHHHHHHHhhccc
Confidence 45666677777777777777777776655544422 22222 233355666666666544
No 93
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=64.12 E-value=2.2e+02 Score=34.03 Aligned_cols=66 Identities=23% Similarity=0.311 Sum_probs=32.4
Q ss_pred EEEEEecC--CEEEEEEeCCcEEEeCCCCCCCcccCCCCCcceecceeeCCCCCCCcEEEEEecCCeEEEEEcCCcEEEe
Q 001721 287 VELVACGE--HHTCAVTLSGDMYTWGGSNCNFGLLGHGNEMSLWLPKKLNGPLEGIHVSSVSCGPWHTAVVTSAGQLFTF 364 (1020)
Q Consensus 287 I~~VacG~--~ht~aLT~dG~VysWG~n~~~~GqLG~g~~~~~~~P~~I~~~l~~~~Iv~VacG~~Hs~aLt~~G~Vy~w 364 (1020)
|..++... ++.++=|..|+||.|--++ |.|= ..+ ...........++--..|.+--..||.|+.|
T Consensus 84 v~al~s~n~G~~l~ag~i~g~lYlWelss---G~LL-----~v~-----~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW 150 (476)
T KOG0646|consen 84 VHALASSNLGYFLLAGTISGNLYLWELSS---GILL-----NVL-----SAHYQSITCLKFSDDGSHIITGSKDGAVLVW 150 (476)
T ss_pred eeeeecCCCceEEEeecccCcEEEEEecc---ccHH-----HHH-----HhhccceeEEEEeCCCcEEEecCCCccEEEE
Confidence 44444432 3444445899999997551 2110 000 0011122233333334455555678889888
Q ss_pred c
Q 001721 365 G 365 (1020)
Q Consensus 365 G 365 (1020)
=
T Consensus 151 ~ 151 (476)
T KOG0646|consen 151 L 151 (476)
T ss_pred E
Confidence 4
No 94
>COG4238 Murein lipoprotein [Cell envelope biogenesis, outer membrane]
Probab=63.99 E-value=33 Score=30.57 Aligned_cols=41 Identities=20% Similarity=0.323 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhh
Q 001721 794 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAK 838 (1020)
Q Consensus 794 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~eE~~k 838 (1020)
++-|-+|.++|..|.-+.++++..+......++- |.+|+++
T Consensus 24 ~aK~dqlss~vq~LnAkv~qLe~dv~a~~~~~qA----Ak~eaar 64 (78)
T COG4238 24 NAKIDQLSSDVQTLNAKVDQLENDVNAMRSDVQA----AKDEAAR 64 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hHhHHHH
Confidence 5667888889999999999888888776655554 7788888
No 95
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=63.80 E-value=42 Score=40.99 Aligned_cols=34 Identities=41% Similarity=0.513 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 001721 794 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKE 827 (1020)
Q Consensus 794 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~e 827 (1020)
.+|+.+|+.+|..|+..++....+.+.++++.++
T Consensus 163 e~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~ke 196 (546)
T PF07888_consen 163 EEEVEQLREEVERLEAELEQEEEEMEQLKQQQKE 196 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555666555555555555555554443
No 96
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=63.74 E-value=43 Score=39.94 Aligned_cols=76 Identities=21% Similarity=0.248 Sum_probs=52.1
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhCCC
Q 001721 787 VDDAKRTSEEVIKLRAQVEELTRKSQLQEIELERTTRQ----LKEALAVAGEETAKCRAAKDVIKSLTAQLKDMAEMLPV 862 (1020)
Q Consensus 787 ~~~l~~~~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~----~~ea~~~a~eE~~k~~aake~iksl~~qlk~~~e~lp~ 862 (1020)
.|.+-+.-+|-.+++.|++.|+.+.-....+|.+.+++ .++..+-+++=.++.++.++-++.|.++|.++..+||-
T Consensus 29 vd~i~~ld~~~r~~~~~~~~l~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~lPN 108 (418)
T TIGR00414 29 LEKLIALDDERKKLLSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELSAALKALEAELQDKLLSIPN 108 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 34444446667777777777777777777777664433 23333444455567788888899999999999888774
No 97
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=62.75 E-value=39 Score=37.57 Aligned_cols=53 Identities=17% Similarity=0.207 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhCCC
Q 001721 810 KSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTAQLKDMAEMLPV 862 (1020)
Q Consensus 810 ~~~~~~~ei~~~~~~~~ea~~~a~eE~~k~~aake~iksl~~qlk~~~e~lp~ 862 (1020)
+.+..+.|.+...++++.+-.-..++-++.+.+..-+|-+..++.+|.+||-.
T Consensus 187 ~~~~~e~eke~~~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~ 239 (269)
T PF05278_consen 187 QHETREEEKEEKDRKLELKKEELEELEEELKQKEKEVKEIKERITEMKGRLGE 239 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567778888888888777777777777888888888888899999888744
No 98
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=62.64 E-value=31 Score=42.02 Aligned_cols=63 Identities=30% Similarity=0.371 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 001721 794 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTAQLKDM 856 (1020)
Q Consensus 794 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~eE~~k~~aake~iksl~~qlk~~ 856 (1020)
..|+.+|+.|+..|+.+.+..+.+......++.+......+==|+..-+|-=||.|..+++.+
T Consensus 112 e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~L 174 (546)
T KOG0977|consen 112 EIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRL 174 (546)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999998777766665556666777777777655544
No 99
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=62.08 E-value=1.2e+02 Score=34.85 Aligned_cols=64 Identities=20% Similarity=0.257 Sum_probs=38.1
Q ss_pred cchhhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 001721 784 KIVVDDAKRT-SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTA 851 (1020)
Q Consensus 784 ~~~~~~l~~~-~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~eE~~k~~aake~iksl~~ 851 (1020)
+.+.+.++.+ -+||.+++++.++|+|..|.+..-+++++.. ..--.-|..+.++.-||+|+=..
T Consensus 213 sa~~eklR~r~eeeme~~~aeq~slkRt~EeL~~G~~kL~~~----~etLEqq~~~L~~niDIL~~k~~ 277 (365)
T KOG2391|consen 213 SAVREKLRRRREEEMERLQAEQESLKRTEEELNIGKQKLVAM----KETLEQQLQSLQKNIDILKSKVR 277 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHH----HHHHHHHHHHHHhhhHHHHHHHH
Confidence 3445667766 8999999999999998877655433333222 22223344555555555554443
No 100
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=61.76 E-value=40 Score=36.40 Aligned_cols=45 Identities=20% Similarity=0.201 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhh
Q 001721 794 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAK 838 (1020)
Q Consensus 794 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~eE~~k 838 (1020)
.+.+.+..++-..|+++.+..+.++++..++++-|+.--.|+.||
T Consensus 44 r~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~G~EdLAr 88 (219)
T TIGR02977 44 RTTSARTIADKKELERRVSRLEAQVADWQEKAELALSKGREDLAR 88 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 455555556778899999999999999999999988755555544
No 101
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=60.82 E-value=52 Score=40.94 Aligned_cols=42 Identities=21% Similarity=0.253 Sum_probs=35.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 001721 792 RTSEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAG 833 (1020)
Q Consensus 792 ~~~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~ 833 (1020)
+..+|+..|+.|+..|..+++..+.+++.++.++++...-..
T Consensus 325 ~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~ 366 (594)
T PF05667_consen 325 EQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELE 366 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 339999999999999999999999999999988887544333
No 102
>cd01244 PH_RasGAP_CG9209 RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. This protein consists of two C2 domains, followed by a RasGAP domain, a PH domain and a BTK domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=60.79 E-value=5.2 Score=37.71 Aligned_cols=31 Identities=19% Similarity=0.444 Sum_probs=28.9
Q ss_pred ceEEEEecCcccceeecCcccchhhhhhhHh
Q 001721 18 QSFSLIYNDRSLDLICKDKDEAEVWFTGLKA 48 (1020)
Q Consensus 18 ~sfsl~~~~~~ld~ickd~~~~~~w~~~l~~ 48 (1020)
..|.+||.+|.|=|.|.+.+|.+.|+..|+.
T Consensus 67 ~~fqivt~~r~~yi~a~s~~E~~~Wi~al~k 97 (98)
T cd01244 67 DIITIVCEDDTMQLQFEAPVEATDWLNALEK 97 (98)
T ss_pred ceEEEEeCCCeEEEECCCHHHHHHHHHHHhc
Confidence 3899999999999999999999999998874
No 103
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=60.60 E-value=35 Score=40.97 Aligned_cols=68 Identities=24% Similarity=0.305 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH------HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhCC
Q 001721 794 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLK------EALAVAGEETAKCRAAKDVIKSLTAQLKDMAEMLP 861 (1020)
Q Consensus 794 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~------ea~~~a~eE~~k~~aake~iksl~~qlk~~~e~lp 861 (1020)
.+++.+|+.|++.++.+++.++..|+++++.-. +.......=..+.+..++.++.|..+|++|.+.|=
T Consensus 333 ~~~~~~l~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~ 406 (451)
T PF03961_consen 333 KEKLEELEEELEELKEELEKLKKNLKKLKKLKKQGKLPPEKKEQLKKLKEKKKELKEELKELKEELKELKEELE 406 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777777777777777766211 11111112222233455666666666666665543
No 104
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=59.86 E-value=56 Score=39.06 Aligned_cols=77 Identities=22% Similarity=0.294 Sum_probs=53.4
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhCCCc
Q 001721 787 VDDAKRTSEEVIKLRAQVEELTRKSQLQEIELERTTRQ---LKEALAVAGEETAKCRAAKDVIKSLTAQLKDMAEMLPVG 863 (1020)
Q Consensus 787 ~~~l~~~~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~---~~ea~~~a~eE~~k~~aake~iksl~~qlk~~~e~lp~~ 863 (1020)
+|.+-+.-+|..+|+.|+++|+.+......+|.+.+++ +++...-+++=.++.+..++-++.+.+++.++.-+||--
T Consensus 27 vd~i~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~iPN~ 106 (425)
T PRK05431 27 VDELLELDEERRELQTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEEIKALEAELDELEAELEELLLRIPNL 106 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 56655556777777777888887777777777653322 333444444444567778899999999999998888753
No 105
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=59.29 E-value=1.3e+02 Score=35.70 Aligned_cols=60 Identities=17% Similarity=0.225 Sum_probs=28.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 001721 789 DAKRTSEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTA 851 (1020)
Q Consensus 789 ~l~~~~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~eE~~k~~aake~iksl~~ 851 (1020)
.+++..+|+..++.....|...+|.+..++++--+-+.++ --||.-|++--.|-+..+|.
T Consensus 213 ~l~~~~~el~eik~~~~~L~~~~e~Lk~~~~~e~~~~~~~---LqEEr~R~erLEeqlNd~~e 272 (395)
T PF10267_consen 213 GLQKILEELREIKESQSRLEESIEKLKEQYQREYQFILEA---LQEERYRYERLEEQLNDLTE 272 (395)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhHHHHHHHHHHHHHHHH
Confidence 3333355555555555555555555554333222222221 22555565555566555554
No 106
>PRK14153 heat shock protein GrpE; Provisional
Probab=58.60 E-value=55 Score=34.86 Aligned_cols=65 Identities=12% Similarity=0.142 Sum_probs=41.4
Q ss_pred hhhhhhhh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 001721 786 VVDDAKRT------SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTA 851 (1020)
Q Consensus 786 ~~~~l~~~------~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~eE~~k~~aake~iksl~~ 851 (1020)
..++||+. .+|+.+|++|+..|+.+.-.+.+|++-++|+.+.-..-+.+-+. -+.++++|-.+.+
T Consensus 25 ~~~~~~~~~~~~~~~~ei~~l~~e~~elkd~~lR~~AEfeN~rKR~~kE~e~~~~~a~-~~~~~~LLpv~Dn 95 (194)
T PRK14153 25 EAEELKEEPEDSTADSETEKCREEIESLKEQLFRLAAEFDNFRKRTAREMEENRKFVL-EQVLLDLLEVTDN 95 (194)
T ss_pred HHHHHhhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhHHhH
Confidence 34556654 66777788888888888878888888887777754443333332 2455555554444
No 107
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=58.57 E-value=45 Score=35.27 Aligned_cols=68 Identities=22% Similarity=0.268 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhCCC
Q 001721 794 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTAQLKDMAEMLPV 862 (1020)
Q Consensus 794 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~eE~~k~~aake~iksl~~qlk~~~e~lp~ 862 (1020)
.+++.+|+++++.++.+.+.++.+|+..+....+.-.... -.++.+..++-++.|.++|+...+--|.
T Consensus 68 ~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~~eR~~-~l~~l~~l~~~~~~l~~el~~~~~~Dp~ 135 (188)
T PF03962_consen 68 QNKLEKLQKEIEELEKKIEELEEKIEEAKKGREESEEREE-LLEELEELKKELKELKKELEKYSENDPE 135 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 6788888888999999988888888888776666533332 3455667777888888888876665554
No 108
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=58.56 E-value=62 Score=33.65 Aligned_cols=38 Identities=13% Similarity=0.263 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 001721 794 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAV 831 (1020)
Q Consensus 794 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~ 831 (1020)
.-+-.+|+.++..|..+.|+.+.||.++++++..++-+
T Consensus 41 ~iDFeqLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~ 78 (177)
T PF13870_consen 41 LIDFEQLKIENQQLNEKIEERNKELLKLKKKIGKTVQI 78 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456666677777777777777777777766544443
No 109
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=58.22 E-value=65 Score=36.91 Aligned_cols=41 Identities=24% Similarity=0.376 Sum_probs=25.6
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 001721 787 VDDAKRTSEEVIKLRAQVEELTRKSQLQEIELERTTRQLKE 827 (1020)
Q Consensus 787 ~~~l~~~~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~e 827 (1020)
.+++++..+|...|..+++.|++++++++.||..++.+.++
T Consensus 49 ~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~ 89 (314)
T PF04111_consen 49 EEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEE 89 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445666666667777777777777777666655443
No 110
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=58.17 E-value=27 Score=37.48 Aligned_cols=47 Identities=21% Similarity=0.281 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH---HHHHHHHhhhh
Q 001721 794 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEAL---AVAGEETAKCR 840 (1020)
Q Consensus 794 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~---~~a~eE~~k~~ 840 (1020)
.||+.-+|++.+.|+.+.+.+..|...++.-+.++- +-|-|++.|+|
T Consensus 92 eqeik~~q~elEvl~~n~Q~lkeE~dd~keiIs~kr~~~~Ka~e~~~kRk 141 (246)
T KOG4657|consen 92 EQEIKATQSELEVLRRNLQLLKEEKDDSKEIISQKRQALSKAKENAGKRK 141 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778888888888888888888888887766665543 55666666643
No 111
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=58.12 E-value=43 Score=41.06 Aligned_cols=48 Identities=31% Similarity=0.382 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHH--HhhhhhHHHHHHHHHHHHHHHh
Q 001721 806 ELTRKSQLQEIELERTTRQLKEALAVAGEE--TAKCRAAKDVIKSLTAQLKDMA 857 (1020)
Q Consensus 806 ~L~~~~~~~~~ei~~~~~~~~ea~~~a~eE--~~k~~aake~iksl~~qlk~~~ 857 (1020)
.-...++.++.+++++++++.++ +++ ..++++|+++=|.++++||+++
T Consensus 339 ~~~~~~~~Le~~~~~l~~~~~~~----A~~Ls~~R~~~A~~L~~~v~~eL~~L~ 388 (557)
T COG0497 339 NSEESLEALEKEVKKLKAELLEA----AEALSAIRKKAAKELEKEVTAELKALA 388 (557)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 33445566666666666655553 333 3568999999999999999985
No 112
>KOG3551 consensus Syntrophins (type beta) [Extracellular structures]
Probab=58.10 E-value=3.4 Score=47.21 Aligned_cols=27 Identities=33% Similarity=0.597 Sum_probs=24.2
Q ss_pred cCcccceeecCcccchhhhhhhHhhhc
Q 001721 25 NDRSLDLICKDKDEAEVWFTGLKALIS 51 (1020)
Q Consensus 25 ~~~~ld~ickd~~~~~~w~~~l~~~~~ 51 (1020)
|..||=|-|||-+||++||..|.+-+.
T Consensus 246 g~~tliLR~kdsa~A~~Wf~AiHa~v~ 272 (506)
T KOG3551|consen 246 GRHTLILRAKDSAEADSWFEAIHANVN 272 (506)
T ss_pred CcceEEEEccCcHHHHHHHHHHHHHHh
Confidence 778999999999999999999987664
No 113
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=57.83 E-value=57 Score=34.18 Aligned_cols=30 Identities=17% Similarity=0.308 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 001721 796 EVIKLRAQVEELTRKSQLQEIELERTTRQL 825 (1020)
Q Consensus 796 ev~~l~~qv~~L~~~~~~~~~ei~~~~~~~ 825 (1020)
|+..++.+...|.++.++.+..++.....+
T Consensus 82 e~~~~~~~l~~l~~el~~l~~~~~~~~~~l 111 (191)
T PF04156_consen 82 ELSELQQQLQQLQEELDQLQERIQELESEL 111 (191)
T ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444443333333333
No 114
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=57.61 E-value=53 Score=35.78 Aligned_cols=56 Identities=21% Similarity=0.251 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 001721 794 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTA 851 (1020)
Q Consensus 794 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~eE~~k~~aake~iksl~~ 851 (1020)
.+.+.++.++...|.++.+.+....+++..+++.|+....|+-|+ .|-+-|++|..
T Consensus 44 r~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~E~LAr--~al~~~~~le~ 99 (225)
T COG1842 44 RQALAQAIARQKQLERKLEEAQARAEKLEEKAELALQAGNEDLAR--EALEEKQSLED 99 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH--HHHHHHHHHHH
Confidence 555556666778999999999999999999999999877777664 34444555554
No 115
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=57.11 E-value=46 Score=41.95 Aligned_cols=34 Identities=26% Similarity=0.414 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 001721 794 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKE 827 (1020)
Q Consensus 794 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~e 827 (1020)
.+++.+++++...+.++++....+|+++++++++
T Consensus 434 ~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 467 (650)
T TIGR03185 434 QNELFRSEAEIEELLRQLETLKEAIEALRKTLDE 467 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556666666666666666666666666666644
No 116
>KOG1729 consensus FYVE finger containing protein [General function prediction only]
Probab=56.52 E-value=3.4 Score=46.36 Aligned_cols=65 Identities=22% Similarity=0.472 Sum_probs=48.3
Q ss_pred ccccCcCCccCCCCCcCccccccccccccCCceEeecCCCCc----ccccccCCCCCCCeeeCccchhh
Q 001721 579 KWVSGVDQSMCSGCRIPFNFKRKRHNCYNCGLVYCHTCSSKK----SVKASMAPNPNKPYRVCDNCFGK 643 (1020)
Q Consensus 579 kwvs~~d~s~Cs~C~~~Fs~~~krhhC~~CG~v~C~~CSs~~----~~~~~~~~~~~k~~RVC~~C~~~ 643 (1020)
.|..+.+...|..|...|.|..++|+|+.||+++|..|...+ .+.+....-.....+.|..|+..
T Consensus 13 ~~~~~~e~~s~~~~~~e~~~~~r~~~~~~~grv~~~q~~~~k~~rk~~q~r~~~l~~D~~~~~~~~~~~ 81 (288)
T KOG1729|consen 13 DWQANSEANSCRNCKVEFCFGRRGHPCRECGRVLCRQGTLVKRCRKKLQSRSFFLFNDILVYGNIVSDN 81 (288)
T ss_pred HHHHhccchhhhhhcccchhhhccCcccccchhhhhhhhhHHHHhcccccccccccccchhhcccccCH
Confidence 588888999999999999999999999999999999997722 12222222223456677777665
No 117
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=56.49 E-value=93 Score=32.94 Aligned_cols=37 Identities=24% Similarity=0.276 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 001721 794 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALA 830 (1020)
Q Consensus 794 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~ 830 (1020)
.+++..|..+.+.|+.+...+..+++..+++.++...
T Consensus 126 ~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~ 162 (189)
T PF10211_consen 126 EEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQ 162 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788888888888888888888888888877776543
No 118
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=56.47 E-value=5.3e+02 Score=32.88 Aligned_cols=120 Identities=10% Similarity=0.093 Sum_probs=68.1
Q ss_pred EEEEEecCc--EEEEEEcCCeEEEEeCCCCCccCCCCCC-CCCcceEeeccCCCcEEEEEecCCEEEEEE--eCCcEEEe
Q 001721 235 VQNIACGGR--HAALVTKQGEVFSWGEELGGRLGHGVDS-DVSHPKLIDALKNINVELVACGEHHTCAVT--LSGDMYTW 309 (1020)
Q Consensus 235 I~~Ia~G~~--hs~~Lt~dG~Vy~wG~N~~GqLG~g~~~-~~~~P~~V~~l~~~~I~~VacG~~ht~aLT--~dG~VysW 309 (1020)
|.+.+.+.. .++.+...|+-.++|...-|||+.=.=. .....++--.+ ..|..++-...-.++.| +||+|-.|
T Consensus 300 ih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~--~~i~~l~YSpDgq~iaTG~eDgKVKvW 377 (893)
T KOG0291|consen 300 IHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHS--DRITSLAYSPDGQLIATGAEDGKVKVW 377 (893)
T ss_pred EEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccc--cceeeEEECCCCcEEEeccCCCcEEEE
Confidence 444555533 2455666799889998888888742211 11111111111 13555555555444443 67888888
Q ss_pred CCCCCCCcccCCCCCcceecceeeCCCCCCCcEEEEEecCCeEEEEEcCCcEEEeccCCC
Q 001721 310 GGSNCNFGLLGHGNEMSLWLPKKLNGPLEGIHVSSVSCGPWHTAVVTSAGQLFTFGDGTF 369 (1020)
Q Consensus 310 G~n~~~~GqLG~g~~~~~~~P~~I~~~l~~~~Iv~VacG~~Hs~aLt~~G~Vy~wG~N~~ 369 (1020)
-... | +--........++..++++.-.+..+...-||.|-.|--..|
T Consensus 378 n~~S---g----------fC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRY 424 (893)
T KOG0291|consen 378 NTQS---G----------FCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRY 424 (893)
T ss_pred eccC---c----------eEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeeccc
Confidence 5441 1 111112223445677888888888888888999999975544
No 119
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=56.23 E-value=52 Score=34.32 Aligned_cols=60 Identities=12% Similarity=0.215 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhh----h-hhHHHHHHHHHHHHHHHhhhCCC
Q 001721 803 QVEELTRKSQLQEIELERTTRQLKEALAVAGEETAK----C-RAAKDVIKSLTAQLKDMAEMLPV 862 (1020)
Q Consensus 803 qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~eE~~k----~-~aake~iksl~~qlk~~~e~lp~ 862 (1020)
+...|+...+.+..||+++++++++-+.-...|..- . -..+|..+.+..+++++..|+-.
T Consensus 74 ~~~~lr~~~e~L~~eie~l~~~L~~ei~~l~a~~klD~n~eK~~~r~e~~~~~~ki~e~~~ki~~ 138 (177)
T PF07798_consen 74 EFAELRSENEKLQREIEKLRQELREEINKLRAEVKLDLNLEKGRIREEQAKQELKIQELNNKIDT 138 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556677777788888888888777654443332210 0 12666777777777777666533
No 120
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=55.90 E-value=33 Score=29.78 Aligned_cols=57 Identities=23% Similarity=0.381 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-------HHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 001721 800 LRAQVEELTRKSQLQEIELERTTRQLKEAL-------AVAGEETAKCRAAKDVIKSLTAQLKDM 856 (1020)
Q Consensus 800 l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~-------~~a~eE~~k~~aake~iksl~~qlk~~ 856 (1020)
+.+++..|..+.+..+.+|+++.+++..-- .+..+|-+|....++-|..|..+|+.|
T Consensus 2 ~~~E~~rL~Kel~kl~~~i~~~~~kL~n~~F~~kAP~eVve~er~kl~~~~~~~~~l~~~l~~L 65 (66)
T PF10458_consen 2 VEAEIERLEKELEKLEKEIERLEKKLSNENFVEKAPEEVVEKEREKLEELEEELEKLEEALEQL 65 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCSTTHHHHS-CCHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456777788888888888888888876322 345577777777888888888888776
No 121
>KOG0230 consensus Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins [Signal transduction mechanisms]
Probab=55.84 E-value=10 Score=50.42 Aligned_cols=34 Identities=29% Similarity=0.972 Sum_probs=29.5
Q ss_pred ccCcCCccCCCCCcCccccccccccccCCceEeecC
Q 001721 581 VSGVDQSMCSGCRIPFNFKRKRHNCYNCGLVYCHTC 616 (1020)
Q Consensus 581 vs~~d~s~Cs~C~~~Fs~~~krhhC~~CG~v~C~~C 616 (1020)
..+...-.|..|.+.|.-.+++||| ||.+||.+|
T Consensus 92 m~d~s~~ec~~~~~~~~t~Rr~~~~--~gqi~~ss~ 125 (1598)
T KOG0230|consen 92 MPDSSSKECYDCEQKFETFRRKHHC--CGQIFCSSC 125 (1598)
T ss_pred CCccccchhhhhccchhhhhccccc--CccccCCcc
Confidence 3445556799999999999999999 999999999
No 122
>KOG3067 consensus Translin family protein [General function prediction only]
Probab=55.54 E-value=67 Score=33.73 Aligned_cols=60 Identities=23% Similarity=0.431 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhCCCccc
Q 001721 799 KLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTAQLKDMAEMLPVGAV 865 (1020)
Q Consensus 799 ~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~eE~~k~~aake~iksl~~qlk~~~e~lp~~~~ 865 (1020)
++|+.|..|+++..+....||-..+ --..--+| |--|+|=|.-+...+.-+||.+|+++.
T Consensus 24 ~iravV~~ie~~~r~iq~~L~~vhq----~~~~i~k~---~~~are~~~~~kq~~~~LaE~~~~~qy 83 (226)
T KOG3067|consen 24 KIRAVVDEIEEKLREIQLLLQNVHQ----NENLIPKE---CGLAREDLENIKQKYRMLAELPPAGQY 83 (226)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc----ccccchHH---HHHHHHHHHHHHHHHHHHhhcCCccce
Confidence 4455555555555555544444443 22222233 444777777777788899999999863
No 123
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=55.40 E-value=1.4e+02 Score=37.09 Aligned_cols=22 Identities=18% Similarity=0.386 Sum_probs=16.6
Q ss_pred EEeeCcEEEEEecCCcEEEEeC
Q 001721 461 VSCGHSLTVALTTTGHVYTMGS 482 (1020)
Q Consensus 461 Ia~G~~htlaLT~dG~Vy~wG~ 482 (1020)
......+.-+..-+|.+|+-|.
T Consensus 509 m~~~rs~~g~~~~~~~ly~vGG 530 (571)
T KOG4441|consen 509 MTSPRSAVGVVVLGGKLYAVGG 530 (571)
T ss_pred CccccccccEEEECCEEEEEec
Confidence 4446666667778999999995
No 124
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=55.05 E-value=29 Score=39.46 Aligned_cols=45 Identities=33% Similarity=0.378 Sum_probs=33.6
Q ss_pred hhhhhhHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 001721 788 DDAKRTSEEV----IKLRAQVEELTRKSQLQEIELERTTRQLKEALAVA 832 (1020)
Q Consensus 788 ~~l~~~~qev----~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a 832 (1020)
.+||++.||+ .+|+++++.|+|+...+...++-+++|++||..-|
T Consensus 235 ~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~eal~~~ 283 (365)
T KOG2391|consen 235 ESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVREALEKA 283 (365)
T ss_pred HHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhh
Confidence 4455554444 67788888999999999999999999999954443
No 125
>PF15358 TSKS: Testis-specific serine kinase substrate
Probab=54.95 E-value=1.6e+02 Score=34.45 Aligned_cols=63 Identities=25% Similarity=0.258 Sum_probs=46.1
Q ss_pred CCCCCCCCcchhhhhhhh----HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhHHHHHHHH---HHHHhh
Q 001721 776 TLSGLASPKIVVDDAKRT----SEEVIKLRAQVEELTRKSQLQEI---ELERTTRQLKEALAVA---GEETAK 838 (1020)
Q Consensus 776 ~~~~~~~~~~~~~~l~~~----~qev~~l~~qv~~L~~~~~~~~~---ei~~~~~~~~ea~~~a---~eE~~k 838 (1020)
..+||--.|-.+..||++ ||-|+.||.+-..|.+++|..-+ ||+.+=.|+||-...+ .|++++
T Consensus 116 vnSGLvrAKDSItSlKekt~~vnQHVq~LQseCsvlsEnLErrrQEaeELEgyCsqLk~nCrkVt~SVedaEi 188 (558)
T PF15358_consen 116 VNSGLVRAKDSITSLKEKTSRVNQHVQTLQSECSVLSENLERRRQEAEELEGYCSQLKENCRKVTRSVEDAEI 188 (558)
T ss_pred hcccceecccchhhHHHhhHHHHHHHHHHHHHhHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 346666777778888888 99999999999999988887654 5666667777655444 345543
No 126
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=54.86 E-value=1.4e+02 Score=33.01 Aligned_cols=91 Identities=20% Similarity=0.296 Sum_probs=48.9
Q ss_pred CcceEeeccCCCcEEE-EEecCCEEEEE-EeCCcEEEeCCCCCCCcccCCCCCc-ceecceeeCCCCCCCcEEEEEec-C
Q 001721 274 SHPKLIDALKNINVEL-VACGEHHTCAV-TLSGDMYTWGGSNCNFGLLGHGNEM-SLWLPKKLNGPLEGIHVSSVSCG-P 349 (1020)
Q Consensus 274 ~~P~~V~~l~~~~I~~-VacG~~ht~aL-T~dG~VysWG~n~~~~GqLG~g~~~-~~~~P~~I~~~l~~~~Iv~VacG-~ 349 (1020)
..|+.+..-.+ .|+. +-|-..|+++- ++++.|-.|-..+ +... ....+ .+|.++-.. .
T Consensus 134 App~E~~ghtg-~Ir~v~wc~eD~~iLSSadd~tVRLWD~rT--------gt~v~sL~~~---------s~VtSlEvs~d 195 (334)
T KOG0278|consen 134 APPKEISGHTG-GIRTVLWCHEDKCILSSADDKTVRLWDHRT--------GTEVQSLEFN---------SPVTSLEVSQD 195 (334)
T ss_pred CCchhhcCCCC-cceeEEEeccCceEEeeccCCceEEEEecc--------CcEEEEEecC---------CCCcceeeccC
Confidence 44555544333 3444 56888888776 7789999996441 1110 11122 223332221 2
Q ss_pred CeEEEEEcCCcEEEeccCCCCcCCCCCCcccccceeec
Q 001721 350 WHTAVVTSAGQLFTFGDGTFGVLGHGDRISVSTPREVD 387 (1020)
Q Consensus 350 ~Hs~aLt~~G~Vy~wG~N~~GQLG~g~~~~~~~P~~V~ 387 (1020)
.+.+.+...+.|--|-.+.++.| ..+..|..|.
T Consensus 196 G~ilTia~gssV~Fwdaksf~~l-----Ks~k~P~nV~ 228 (334)
T KOG0278|consen 196 GRILTIAYGSSVKFWDAKSFGLL-----KSYKMPCNVE 228 (334)
T ss_pred CCEEEEecCceeEEeccccccce-----eeccCccccc
Confidence 34555555567878887877766 3344555554
No 127
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=54.72 E-value=82 Score=33.86 Aligned_cols=37 Identities=16% Similarity=-0.083 Sum_probs=25.9
Q ss_pred eecceeEEEEEEcCCCccceeEEEeeccccCHHHHHHHH
Q 001721 952 QDETGVYITLVALPGGLKDLKRVRFSRKKFSEKQAEQWW 990 (1020)
Q Consensus 952 ~~e~gv~~t~~~~~~g~~~~~rvrf~~~~f~~~~a~~ww 990 (1020)
-.||-+||+.-.-+-+...|+-++.+-.- -..|-.|-
T Consensus 229 die~~~~~~~~~e~e~~i~lg~~~iaaps--REdave~l 265 (290)
T COG4026 229 DIEGQGYIYAEDEKEVEILLGTVYIAAPS--REDAVEEL 265 (290)
T ss_pred hccceeeeecccccccceeeeeeeeecCc--hHHHHHHH
Confidence 35677899998888888899999886322 23444454
No 128
>PF07160 DUF1395: Protein of unknown function (DUF1395); InterPro: IPR009829 This family consists of several hypothetical eukaryotic proteins of around 250 residues in length. The function of this family is unknown.; PDB: 4AJ5_G.
Probab=54.64 E-value=73 Score=35.12 Aligned_cols=72 Identities=19% Similarity=0.188 Sum_probs=36.6
Q ss_pred HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH---HHhhhCCCccc
Q 001721 794 SEEVIKLRA--QVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTAQLK---DMAEMLPVGAV 865 (1020)
Q Consensus 794 ~qev~~l~~--qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~eE~~k~~aake~iksl~~qlk---~~~e~lp~~~~ 865 (1020)
.||++.||. |-.+|+.-+...+.++.....++++.=.....|.....-+||.+.++-.|++ .|.+.+|+...
T Consensus 5 ~~~~~~~r~~~~~~~~~~~L~~i~~~~~~i~~~l~~~~~~l~~~~~~~~~lk~l~~~~~~~~~~l~hl~~nvP~~lp 81 (243)
T PF07160_consen 5 LKELLSLRNMGQDPNLKDTLSKIDQEVSAIEELLNDIEQELQREEEALPKLKELMESSEEQQKKLQHLKENVPPHLP 81 (243)
T ss_dssp HHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccc
Confidence 345555554 4444555455555555555555555444444444556668888888877655 56778887653
No 129
>PRK04325 hypothetical protein; Provisional
Probab=54.40 E-value=1.2e+02 Score=27.20 Aligned_cols=18 Identities=17% Similarity=0.228 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHhhhC
Q 001721 843 KDVIKSLTAQLKDMAEML 860 (1020)
Q Consensus 843 ke~iksl~~qlk~~~e~l 860 (1020)
+.-++.|+.+|+++....
T Consensus 43 ~~ql~~L~~rl~~~~~~~ 60 (74)
T PRK04325 43 QAQLRLLYQQMRDANPDA 60 (74)
T ss_pred HHHHHHHHHHHHHhcccc
Confidence 344667777888876554
No 130
>PF14643 DUF4455: Domain of unknown function (DUF4455)
Probab=54.26 E-value=39 Score=40.93 Aligned_cols=64 Identities=23% Similarity=0.376 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhCCCcccc
Q 001721 794 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTAQLKDMAEMLPVGAVR 866 (1020)
Q Consensus 794 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~eE~~k~~aake~iksl~~qlk~~~e~lp~~~~~ 866 (1020)
.|++.++-.+|.. .+..+..+|..+...+++ =|-++++..+.+++.++..|.++|-.|||+..+
T Consensus 67 ~~~l~~~w~~v~~---~~~~r~~~I~~l~~~L~~------~E~~R~~~l~~~l~~~~~~L~~ia~~~~~dv~r 130 (473)
T PF14643_consen 67 IQDLLELWDEVAE---HSQKRKQWIKELDEDLEE------LEKERADKLKKVLRKYVEILEKIAHLLPPDVER 130 (473)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHH
Confidence 7777777777765 555677788887777776 678888999999999999999999999999644
No 131
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=54.21 E-value=1.1e+02 Score=29.70 Aligned_cols=59 Identities=24% Similarity=0.229 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhh
Q 001721 800 LRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTAQLKDMAE 858 (1020)
Q Consensus 800 l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~eE~~k~~aake~iksl~~qlk~~~e 858 (1020)
|+..-..|......-+.-|.....+...|+..|.+|......-..-|+-|+++|..|-.
T Consensus 37 L~~~e~~l~~~~~~f~~flken~~k~~rA~k~a~~e~k~~~~k~~ei~~l~~~l~~l~~ 95 (126)
T PF13863_consen 37 LEKKEQELEEDVIKFDKFLKENEAKRERAEKRAEEEKKKKEEKEAEIKKLKAELEELKS 95 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455555555666666677777889999999999998888899999998887753
No 132
>PRK14161 heat shock protein GrpE; Provisional
Probab=53.95 E-value=73 Score=33.47 Aligned_cols=57 Identities=25% Similarity=0.334 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 001721 794 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTA 851 (1020)
Q Consensus 794 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~eE~~k~~aake~iksl~~ 851 (1020)
.+|+.+|+.|+..|+.+.....+|++-++|+.+.-..-+.+-+. -+.+++++-.+.+
T Consensus 25 ~~ei~~l~~e~~elkd~~lR~~AefeN~rkR~~ke~~~~~~~a~-~~~~~~LLpv~Dn 81 (178)
T PRK14161 25 NPEITALKAEIEELKDKLIRTTAEIDNTRKRLEKARDEAKDYAI-ATFAKELLNVSDN 81 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhHHhH
Confidence 77888888888888888888888888888887765544443333 3445555544443
No 133
>PF03310 Cauli_DNA-bind: Caulimovirus DNA-binding protein; InterPro: IPR004986 The gene III product (P15) of cauliflower mosaic virus (CaMV) is a DNA binding protein in which the DNA binding activity is located on its C-terminal part. A family of related proteins is expressed by other members of the Caulimoviridae.; GO: 0003677 DNA binding; PDB: 3F6N_A 3K4T_D.
Probab=53.66 E-value=45 Score=32.61 Aligned_cols=22 Identities=23% Similarity=0.528 Sum_probs=14.3
Q ss_pred HHHHHhhhhhHHHHHHHHHHHH
Q 001721 832 AGEETAKCRAAKDVIKSLTAQL 853 (1020)
Q Consensus 832 a~eE~~k~~aake~iksl~~ql 853 (1020)
..++..||.-+||+++.|..|=
T Consensus 50 isdkIdkCeC~Kelle~Lk~q~ 71 (121)
T PF03310_consen 50 ISDKIDKCECNKELLEALKKQP 71 (121)
T ss_dssp HHHHHHT-TTHHHHHHHHT---
T ss_pred HHHHHHhchhhHHHHHHHhcCC
Confidence 4577888888888888887754
No 134
>smart00030 CLb CLUSTERIN Beta chain.
Probab=53.47 E-value=57 Score=34.55 Aligned_cols=47 Identities=19% Similarity=0.284 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhHHHHH
Q 001721 800 LRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVI 846 (1020)
Q Consensus 800 l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~eE~~k~~aake~i 846 (1020)
.+.-++.-.++-..+-.-|++++++-+||+.+|.|=-.|.+++.+|-
T Consensus 34 MK~~mer~~eeh~~ll~tLe~~kk~KeeAlk~~~e~e~kL~E~~~vC 80 (206)
T smart00030 34 IKTLIEKTNKERKSLLSTLEEAKKKKEEALKDTRESEEKLKESQGVC 80 (206)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444556789999999999999999889988888875
No 135
>PHA02047 phage lambda Rz1-like protein
Probab=53.40 E-value=81 Score=29.58 Aligned_cols=28 Identities=11% Similarity=0.224 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 001721 801 RAQVEELTRKSQLQEIELERTTRQLKEA 828 (1020)
Q Consensus 801 ~~qv~~L~~~~~~~~~ei~~~~~~~~ea 828 (1020)
+.+.++|+.++|..+..|..+++++++-
T Consensus 33 h~~a~~la~qLE~a~~r~~~~Q~~V~~l 60 (101)
T PHA02047 33 HEEAKRQTARLEALEVRYATLQRHVQAV 60 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4467777777777777777777777763
No 136
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=53.16 E-value=48 Score=39.45 Aligned_cols=60 Identities=20% Similarity=0.350 Sum_probs=34.6
Q ss_pred CCCceeeeec-ceeEEE----EEEcCCC----ccceeEEE-eec-cccCH---HHHHHHHH---Hhhhhhhhhhccc
Q 001721 945 QGDEWVEQDE-TGVYIT----LVALPGG----LKDLKRVR-FSR-KKFSE---KQAEQWWA---ANRARVYQQYNVS 1004 (1020)
Q Consensus 945 ~~~~~~~~~e-~gv~~t----~~~~~~g----~~~~~rvr-f~~-~~f~~---~~a~~ww~---~n~~~~~~~y~~~ 1004 (1020)
.-.|++++.+ |.-|.- |+.-.|. +|.|-||. |.| |+|.= .++..+.+ +|-+.|.+...++
T Consensus 242 ~~~Eil~~~~LP~k~~~~S~cFR~EAGs~GrdtrGliRvHQF~KVE~v~~~~Pe~S~~~~E~m~~~ae~il~~LeLP 318 (429)
T COG0172 242 HRDEILDEEDLPIKYTAYSPCFRSEAGSAGKDTRGLIRVHQFDKVELVVITKPEESEEELEEMLGNAEEVLQELELP 318 (429)
T ss_pred hcccccccccCCeeeEEEChhhhcccccccccccceeeeeeeeeEEEEEEeCcchhHHHHHHHHHHHHHHHHHhCCC
Confidence 3458898776 544442 3334444 67777774 777 77653 33333433 3556677776654
No 137
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=53.15 E-value=78 Score=31.99 Aligned_cols=56 Identities=27% Similarity=0.293 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhh
Q 001721 803 QVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTAQLKDMAE 858 (1020)
Q Consensus 803 qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~eE~~k~~aake~iksl~~qlk~~~e 858 (1020)
++..|....+.+...+++++.+++++-.-++---++.++++.-++.+...+|...|
T Consensus 60 ~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~ke 115 (151)
T PF11559_consen 60 KLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKE 115 (151)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555556666666555555555556667777777777776665443
No 138
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=53.09 E-value=1.3e+02 Score=33.06 Aligned_cols=150 Identities=13% Similarity=0.071 Sum_probs=0.0
Q ss_pred EEecCCEEEEEEeCCcEEEeCCCCCCCcccCCCCCcceecceeeCCCCCCCcEEEEEecCCeEEEEEcCCcEEEeccCCC
Q 001721 290 VACGEHHTCAVTLSGDMYTWGGSNCNFGLLGHGNEMSLWLPKKLNGPLEGIHVSSVSCGPWHTAVVTSAGQLFTFGDGTF 369 (1020)
Q Consensus 290 VacG~~ht~aLT~dG~VysWG~n~~~~GqLG~g~~~~~~~P~~I~~~l~~~~Iv~VacG~~Hs~aLt~~G~Vy~wG~N~~ 369 (1020)
|+-...+.++=...|+|... ...-|-.+.....-.-+.+...-.+.+|-+++.-+.|.+.-.+ |.||.|-+|++
T Consensus 18 ~sp~~~~l~agn~~G~iav~-----sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d~~Lls~gd-G~V~gw~W~E~ 91 (325)
T KOG0649|consen 18 ISPSKQYLFAGNLFGDIAVL-----SLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHDDFLLSGGD-GLVYGWEWNEE 91 (325)
T ss_pred hCCcceEEEEecCCCeEEEE-----EehhhhccccCCCCCcceeeccccCCCeeeeeeehhheeeccC-ceEEEeeehhh
Q ss_pred Cc-CCCCCCcccccceeeccCCCCeEEEEecC-CceEEEEEEeeecCcccccCCCCcEEEecCCCCCCcCCCCCCcceec
Q 001721 370 GV-LGHGDRISVSTPREVDSLKGLRTVRAACG-VWHTAAVVEVMVGSSSSSNCSSGKLFTWGDGDRGRLGHGDKEARLVP 447 (1020)
Q Consensus 370 GQ-LG~g~~~~~~~P~~V~~l~~~~I~~IacG-~~ht~aLtE~~~~~~~~~~~~~G~Ly~WG~n~~GQLG~g~~~~~~~P 447 (1020)
-. ++....-.+..|..+..+.--.|-....- ...++++.- .|+.+|+|
T Consensus 92 ~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~Ag-----------GD~~~y~~------------------- 141 (325)
T KOG0649|consen 92 EESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAG-----------GDGVIYQV------------------- 141 (325)
T ss_pred hhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEec-----------CCeEEEEE-------------------
Q ss_pred EEeeccCCCCeeEEEeeCc---EEEEE-ecCCcEEE
Q 001721 448 TCVAALVEPNFCQVSCGHS---LTVAL-TTTGHVYT 479 (1020)
Q Consensus 448 t~V~~l~~~~I~~Ia~G~~---htlaL-T~dG~Vy~ 479 (1020)
.+.+-+|....-|+. |+++. ..+|+|+.
T Consensus 142 ----dlE~G~i~r~~rGHtDYvH~vv~R~~~~qils 173 (325)
T KOG0649|consen 142 ----DLEDGRIQREYRGHTDYVHSVVGRNANGQILS 173 (325)
T ss_pred ----EecCCEEEEEEcCCcceeeeeeecccCcceee
No 139
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=53.09 E-value=1.2e+02 Score=33.54 Aligned_cols=7 Identities=14% Similarity=0.463 Sum_probs=3.1
Q ss_pred HHHHHHH
Q 001721 849 LTAQLKD 855 (1020)
Q Consensus 849 l~~qlk~ 855 (1020)
+..+|++
T Consensus 110 m~~~L~~ 116 (251)
T PF11932_consen 110 MIDELEQ 116 (251)
T ss_pred HHHHHHH
Confidence 3334444
No 140
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=52.88 E-value=85 Score=35.51 Aligned_cols=61 Identities=25% Similarity=0.298 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHh
Q 001721 794 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTAQLKDMA 857 (1020)
Q Consensus 794 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~eE~~k~~aake~iksl~~qlk~~~ 857 (1020)
.+|+..++.++.+|..+.+.+..+...+.+++.+.-.--..|..+ -...|..|..+|.+|-
T Consensus 215 ~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~---~~~~i~~le~el~~l~ 275 (312)
T PF00038_consen 215 KEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREE---YQAEIAELEEELAELR 275 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHH---HHHhhhccchhHHHHH
Confidence 566667777777777776666666666777777666665666555 3444666666555543
No 141
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=52.73 E-value=72 Score=41.25 Aligned_cols=70 Identities=23% Similarity=0.219 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhCCCcc
Q 001721 795 EEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTAQLKDMAEMLPVGA 864 (1020)
Q Consensus 795 qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~eE~~k~~aake~iksl~~qlk~~~e~lp~~~ 864 (1020)
+|+..|+.+++.|++..+..+.+++...+++..-.+-..+=.+|..++..-.+-+.++|++..+++-..+
T Consensus 815 ~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~k~~~~d 884 (1174)
T KOG0933|consen 815 NEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKKAQAELKDQKAKQRDID 884 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhhh
Confidence 3344444444333333333333333333333333333333344555566666666667777766665543
No 142
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=52.60 E-value=22 Score=38.95 Aligned_cols=37 Identities=41% Similarity=0.479 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 001721 794 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALA 830 (1020)
Q Consensus 794 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~ 830 (1020)
.+...++-++|.+|.+++.+++.+|++...++++|..
T Consensus 28 ~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~ 64 (237)
T PF00261_consen 28 EKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATE 64 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 5555666668899999999998888888776665553
No 143
>PRK02793 phi X174 lysis protein; Provisional
Probab=52.46 E-value=1.2e+02 Score=26.90 Aligned_cols=17 Identities=29% Similarity=0.286 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHhhhC
Q 001721 844 DVIKSLTAQLKDMAEML 860 (1020)
Q Consensus 844 e~iksl~~qlk~~~e~l 860 (1020)
.-++.|..||+++.+..
T Consensus 43 ~~l~~L~~rl~~~~~~~ 59 (72)
T PRK02793 43 DHLRLLTEKLKASQPSN 59 (72)
T ss_pred HHHHHHHHHHHhhcccc
Confidence 44666777777776554
No 144
>PF06092 DUF943: Enterobacterial putative membrane protein (DUF943); InterPro: IPR010351 This family consists of several hypothetical proteins from Escherichia coli, Yersinia pestis and Salmonella typhi.
Probab=52.42 E-value=15 Score=37.61 Aligned_cols=27 Identities=22% Similarity=0.656 Sum_probs=21.4
Q ss_pred cCHHHHHHHHHHhhhhhhhhhcccccc
Q 001721 981 FSEKQAEQWWAANRARVYQQYNVSMVD 1007 (1020)
Q Consensus 981 f~~~~a~~ww~~n~~~~~~~y~~~~~~ 1007 (1020)
|++..==.||.+|+++|.++|+++-.+
T Consensus 51 ~Td~gKI~WW~~Nk~~l~~KY~ip~~~ 77 (157)
T PF06092_consen 51 LTDSGKINWWLKNKDMLKEKYNIPEPD 77 (157)
T ss_pred CCccchhhHHHHhHHHHHHhcCCCCCC
Confidence 345555569999999999999998533
No 145
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=52.25 E-value=80 Score=35.92 Aligned_cols=52 Identities=15% Similarity=0.137 Sum_probs=31.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHHhhhhh
Q 001721 790 AKRTSEEVIKLRAQVEELTRKSQLQEIELERTT---RQLKEALAVAGEETAKCRA 841 (1020)
Q Consensus 790 l~~~~qev~~l~~qv~~L~~~~~~~~~ei~~~~---~~~~ea~~~a~eE~~k~~a 841 (1020)
++++.+|+.+||.|-+.|..++-+...=+-+.+ +++++.++-+.||-...++
T Consensus 94 ~~e~q~e~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lql 148 (401)
T PF06785_consen 94 VEERQQESEQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQL 148 (401)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence 333378888888887777766554443333332 4566666666666655443
No 146
>PLN02943 aminoacyl-tRNA ligase
Probab=52.18 E-value=25 Score=46.28 Aligned_cols=66 Identities=18% Similarity=0.247 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-------HHHHHHHhhhhhHHHHHHHHHHHHHHHhhh
Q 001721 794 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEAL-------AVAGEETAKCRAAKDVIKSLTAQLKDMAEM 859 (1020)
Q Consensus 794 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~-------~~a~eE~~k~~aake~iksl~~qlk~~~e~ 859 (1020)
.++++.+.+|++.|+.+.+.++.||+++++++...- .+..+|-+|.+..++-|+.|..+|+++.+-
T Consensus 881 l~~~iD~~~E~~rL~K~l~klekei~~~~~kLsN~~F~~KAP~evv~~e~~kl~~~~~~l~~~~~~l~~l~~~ 953 (958)
T PLN02943 881 LADMVDISAEVERLSKRLSKMQTEYDALAARLSSPKFVEKAPEDVVRGVREKAAEAEEKIKLTKNRLAFLKST 953 (958)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 566777888888888899999999999998887433 456677788888888888888888777643
No 147
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=52.07 E-value=51 Score=34.87 Aligned_cols=33 Identities=21% Similarity=0.286 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 001721 794 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLK 826 (1020)
Q Consensus 794 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ 826 (1020)
..++..|++++..|+.++..++.+|+...+-++
T Consensus 115 ~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e 147 (194)
T PF08614_consen 115 ERRLAELEAELAQLEEKIKDLEEELKEKNKANE 147 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666777777777777777766655544
No 148
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=52.06 E-value=40 Score=38.24 Aligned_cols=40 Identities=33% Similarity=0.329 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 001721 794 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAG 833 (1020)
Q Consensus 794 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~ 833 (1020)
.||-.+|+.|+.+|.|+|.+.+.|-|.+.+.+.||.+.-.
T Consensus 140 ~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~layqq 179 (401)
T PF06785_consen 140 REENQCLQLQLDALQQECGEKEEESQTLNRELAEALAYQQ 179 (401)
T ss_pred HHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999999999999999999999987543
No 149
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=51.97 E-value=3.8e+02 Score=29.85 Aligned_cols=209 Identities=17% Similarity=0.131 Sum_probs=0.0
Q ss_pred cEEEEEecCCEE------------------------EEEEeCCcEEEeCCCCCCCcccCCCCCcceecceeeCCCCCCCc
Q 001721 286 NVELVACGEHHT------------------------CAVTLSGDMYTWGGSNCNFGLLGHGNEMSLWLPKKLNGPLEGIH 341 (1020)
Q Consensus 286 ~I~~VacG~~ht------------------------~aLT~dG~VysWG~n~~~~GqLG~g~~~~~~~P~~I~~~l~~~~ 341 (1020)
.|.-+++|..|| +-||.+++...-+.+ ..-.|-.-...+...-..+.+...++.
T Consensus 10 ~viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~--qhvRlyD~~S~np~Pv~t~e~h~kNVt 87 (311)
T KOG0315|consen 10 PVILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN--QHVRLYDLNSNNPNPVATFEGHTKNVT 87 (311)
T ss_pred ceEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccC--CeeEEEEccCCCCCceeEEeccCCceE
Q ss_pred EEEEEecCCeEEEEEcCCcEEEeccCCCCcCCCCCCcccccceeeccCCCCeEEEEecCCceEEEEEEeeecCcccccCC
Q 001721 342 VSSVSCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRISVSTPREVDSLKGLRTVRAACGVWHTAAVVEVMVGSSSSSNCS 421 (1020)
Q Consensus 342 Iv~VacG~~Hs~aLt~~G~Vy~wG~N~~GQLG~g~~~~~~~P~~V~~l~~~~I~~IacG~~ht~aLtE~~~~~~~~~~~~ 421 (1020)
.+.+-|-.....-=.+||.+-.| +......++.........-+-+--...|-+.=+ .
T Consensus 88 aVgF~~dgrWMyTgseDgt~kIW-----------dlR~~~~qR~~~~~spVn~vvlhpnQteLis~d------------q 144 (311)
T KOG0315|consen 88 AVGFQCDGRWMYTGSEDGTVKIW-----------DLRSLSCQRNYQHNSPVNTVVLHPNQTELISGD------------Q 144 (311)
T ss_pred EEEEeecCeEEEecCCCceEEEE-----------eccCcccchhccCCCCcceEEecCCcceEEeec------------C
Q ss_pred CCcEEEecCCCCCCcCCCCCCcceecEEeeccCCCCeeEEEeeCcEEEEEecCCcEEEEeCCCCCCCCCCCCCCCcceee
Q 001721 422 SGKLFTWGDGDRGRLGHGDKEARLVPTCVAALVEPNFCQVSCGHSLTVALTTTGHVYTMGSPVYGQLGDPKANGKLPTRV 501 (1020)
Q Consensus 422 ~G~Ly~WG~n~~GQLG~g~~~~~~~Pt~V~~l~~~~I~~Ia~G~~htlaLT~dG~Vy~wG~N~~GQLG~~~~~~~~P~~v 501 (1020)
+|.++.|- |+.......+.|.....+ .-..|.--....++.++.|++|+|-.-. +.....-.--.++
T Consensus 145 sg~irvWD------l~~~~c~~~liPe~~~~i---~sl~v~~dgsml~a~nnkG~cyvW~l~~----~~~~s~l~P~~k~ 211 (311)
T KOG0315|consen 145 SGNIRVWD------LGENSCTHELIPEDDTSI---QSLTVMPDGSMLAAANNKGNCYVWRLLN----HQTASELEPVHKF 211 (311)
T ss_pred CCcEEEEE------ccCCccccccCCCCCcce---eeEEEcCCCcEEEEecCCccEEEEEccC----CCccccceEhhhe
Q ss_pred ccccCCCcEEEEEecCcEEEEEeCCCeEEEE
Q 001721 502 EGKLTKNFVEEIACGDYHVAVLTSRTEVYTW 532 (1020)
Q Consensus 502 ~~~l~~~~I~~Ia~G~~HslaLTsdG~VytW 532 (1020)
...-...--...+-+..|-+.-.+|.+|+.|
T Consensus 212 ~ah~~~il~C~lSPd~k~lat~ssdktv~iw 242 (311)
T KOG0315|consen 212 QAHNGHILRCLLSPDVKYLATCSSDKTVKIW 242 (311)
T ss_pred ecccceEEEEEECCCCcEEEeecCCceEEEE
No 150
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=51.94 E-value=79 Score=36.12 Aligned_cols=68 Identities=24% Similarity=0.376 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHhHHHHHHHHHHHHhhhhhHHH-------HHHHHHHHHHH
Q 001721 794 SEEVIKLRAQVEELTRKSQ-----------LQEIELERTTRQLKEALAVAGEETAKCRAAKD-------VIKSLTAQLKD 855 (1020)
Q Consensus 794 ~qev~~l~~qv~~L~~~~~-----------~~~~ei~~~~~~~~ea~~~a~eE~~k~~aake-------~iksl~~qlk~ 855 (1020)
.+|-..|+.....|..+++ ..+.|+|.+..+++.+...+..|.+|++.-++ =|..+..+-++
T Consensus 134 ~~eN~~L~eKlK~l~eQye~rE~~~~~~~k~keLE~Ql~~AKl~q~~~~~~~e~~k~~~~~~~~l~~~~~~~~~~~~E~~ 213 (309)
T PF09728_consen 134 REENEELREKLKSLIEQYELREEHFEKLLKQKELEVQLAEAKLEQQQEEAEQEKEKAKQEKEILLEEAAQVQTLKETEKE 213 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666667776666666655 45688999999999999999999999999999 66666666555
Q ss_pred HhhhCC
Q 001721 856 MAEMLP 861 (1020)
Q Consensus 856 ~~e~lp 861 (1020)
|-+.|-
T Consensus 214 Lr~QL~ 219 (309)
T PF09728_consen 214 LREQLN 219 (309)
T ss_pred HHHHHH
Confidence 555554
No 151
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=51.82 E-value=66 Score=38.55 Aligned_cols=33 Identities=24% Similarity=0.335 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 001721 794 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLK 826 (1020)
Q Consensus 794 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ 826 (1020)
+-+++++|.++..|.++=+.|-.|.++++++-+
T Consensus 65 va~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~ 97 (472)
T TIGR03752 65 VAEVKELRKRLAKLISENEALKAENERLQKREQ 97 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 888899999999888888888888888766443
No 152
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=51.75 E-value=85 Score=34.97 Aligned_cols=64 Identities=13% Similarity=0.240 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhC
Q 001721 797 VIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTAQLKDMAEML 860 (1020)
Q Consensus 797 v~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~eE~~k~~aake~iksl~~qlk~~~e~l 860 (1020)
+..++.++..+..+.+.++.+|+.+..|+++.-.--.+.=++.|..+.=|+.|...+++.-+.|
T Consensus 40 l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l 103 (265)
T COG3883 40 LSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELL 103 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333334444444444444443333333333334445555555555555544433
No 153
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=51.64 E-value=67 Score=40.99 Aligned_cols=58 Identities=21% Similarity=0.245 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhC
Q 001721 803 QVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTAQLKDMAEML 860 (1020)
Q Consensus 803 qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~eE~~k~~aake~iksl~~qlk~~~e~l 860 (1020)
-|..|+++.++|-.||+.++.++++.-..|..=++|.+.|+|-=+.|..+++.|..++
T Consensus 566 rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~l 623 (717)
T PF10168_consen 566 RVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQLL 623 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5778999999999999999999888877777777899999999999999888776544
No 154
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=51.41 E-value=1.7e+02 Score=32.80 Aligned_cols=29 Identities=24% Similarity=0.349 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 001721 798 IKLRAQVEELTRKSQLQEIELERTTRQLK 826 (1020)
Q Consensus 798 ~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ 826 (1020)
-.||+..+.-..+++.+|.||++++.||-
T Consensus 71 RHLkakLkes~~~l~dRetEI~eLksQL~ 99 (305)
T PF15290_consen 71 RHLKAKLKESENRLHDRETEIDELKSQLA 99 (305)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 45566666666666777777777777763
No 155
>PLN02153 epithiospecifier protein
Probab=51.40 E-value=4.2e+02 Score=30.22 Aligned_cols=17 Identities=29% Similarity=0.591 Sum_probs=12.4
Q ss_pred CEEEEEEeCCcEEEeCCC
Q 001721 295 HHTCAVTLSGDMYTWGGS 312 (1020)
Q Consensus 295 ~ht~aLT~dG~VysWG~n 312 (1020)
.|++++ .+++||++|..
T Consensus 130 ~~~~~~-~~~~iyv~GG~ 146 (341)
T PLN02153 130 FHSMAS-DENHVYVFGGV 146 (341)
T ss_pred eeEEEE-ECCEEEEECCc
Confidence 566554 57899999965
No 156
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=51.39 E-value=16 Score=25.31 Aligned_cols=18 Identities=28% Similarity=0.549 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 001721 795 EEVIKLRAQVEELTRKSQ 812 (1020)
Q Consensus 795 qev~~l~~qv~~L~~~~~ 812 (1020)
+||.+||..++.|++++.
T Consensus 1 ~E~~rlr~rI~dLer~L~ 18 (23)
T PF04508_consen 1 REMNRLRNRISDLERQLS 18 (23)
T ss_pred ChHHHHHHHHHHHHHHHH
Confidence 478888888888877754
No 157
>COG4345 Uncharacterized protein conserved in archaea [Function unknown]
Probab=51.28 E-value=60 Score=33.34 Aligned_cols=51 Identities=27% Similarity=0.341 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 001721 805 EELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTAQLKD 855 (1020)
Q Consensus 805 ~~L~~~~~~~~~ei~~~~~~~~ea~~~a~eE~~k~~aake~iksl~~qlk~ 855 (1020)
+.|.+|...-..|.++.++.++|...---.+|.|.|.|-++|-+|....|.
T Consensus 121 ~el~eK~~~~~~Everi~~~ieE~v~eLe~~a~~lke~~~~i~~l~~~ik~ 171 (181)
T COG4345 121 KELEEKLADAMEEVERIEKTIEELVSELESLANKLKEVTDVINSLVERIKQ 171 (181)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 345566666666777777777777766667777888899999999887774
No 158
>KOG4001 consensus Axonemal dynein light chain [Cytoskeleton]
Probab=51.28 E-value=97 Score=32.85 Aligned_cols=65 Identities=20% Similarity=0.255 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH----HhhhhhHHHHHHHHHHHHHHHhh
Q 001721 794 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEE----TAKCRAAKDVIKSLTAQLKDMAE 858 (1020)
Q Consensus 794 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~eE----~~k~~aake~iksl~~qlk~~~e 858 (1020)
-+|-.+++.++..|+-+-+.++.+|...++|++-+--.-.|| -.|.|..-+++|--..|||.--|
T Consensus 184 e~ek~~~~~~~k~le~~k~~Le~~ia~~k~K~e~~e~r~~E~r~ieEkk~~eei~fLk~tN~qLKaQLe 252 (259)
T KOG4001|consen 184 ENEKTRATTEWKVLEDKKKELELKIAQLKKKLETDEIRSEEEREIEEKKMKEEIEFLKETNRQLKAQLE 252 (259)
T ss_pred hhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 556667777888888888888888888888876554444443 35777777788877778886443
No 159
>PRK14156 heat shock protein GrpE; Provisional
Probab=51.22 E-value=80 Score=33.17 Aligned_cols=57 Identities=18% Similarity=0.173 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 001721 794 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTA 851 (1020)
Q Consensus 794 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~eE~~k~~aake~iksl~~ 851 (1020)
.+|+..|++|+..|+.+.-.+.+|++-++|+.+.-...+..-+. -+.++++|-.+.+
T Consensus 33 ~~~l~~l~~e~~elkd~~lR~~AEfeN~rKR~~rE~e~~~~~a~-~~~~~~LLpVlDn 89 (177)
T PRK14156 33 KSELELANERADEFENKYLRAHAEMQNIQRRANEERQQLQRYRS-QDLAKAILPSLDN 89 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhHHhH
Confidence 56667788888888888888888888888877765555444333 3555665555544
No 160
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=51.10 E-value=61 Score=41.75 Aligned_cols=30 Identities=27% Similarity=0.337 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001721 794 SEEVIKLRAQVEELTRKSQLQEIELERTTR 823 (1020)
Q Consensus 794 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~ 823 (1020)
.+|+.+++.+++.++++.+.+..++++-++
T Consensus 531 ~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~ 560 (771)
T TIGR01069 531 NEHLEKLLKEQEKLKKELEQEMEELKERER 560 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555566555555555544444333
No 161
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=51.06 E-value=59 Score=34.80 Aligned_cols=59 Identities=22% Similarity=0.313 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 001721 794 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTAQLKDM 856 (1020)
Q Consensus 794 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~eE~~k~~aake~iksl~~qlk~~ 856 (1020)
-.+|..+..+...|++-++..+.|++.++++++.- ..+-...+.+|.-++.++.+|+++
T Consensus 47 ~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y----~kdK~~L~~~k~rl~~~ek~l~~L 105 (201)
T PF13851_consen 47 EKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNY----EKDKQSLQNLKARLKELEKELKDL 105 (201)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666677777777777777777777777651 112222344566666666666654
No 162
>PF11068 YlqD: YlqD protein; InterPro: IPR021297 This bacterial family of proteins has no known function. ; PDB: 4DCI_C.
Probab=50.65 E-value=1.6e+02 Score=29.44 Aligned_cols=63 Identities=21% Similarity=0.354 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHH----HHHHHH----HHHHhhhhhHHHHHHHHHHHHHHHhhhCCCcc
Q 001721 798 IKLRAQVEELTRKSQLQEIELERTTRQLK----EALAVA----GEETAKCRAAKDVIKSLTAQLKDMAEMLPVGA 864 (1020)
Q Consensus 798 ~~l~~qv~~L~~~~~~~~~ei~~~~~~~~----ea~~~a----~eE~~k~~aake~iksl~~qlk~~~e~lp~~~ 864 (1020)
..|++++..|.++|++++.+.++.-+..+ ....-+ ..|-++ -.|.++-|..||+.+ ++||.|.
T Consensus 23 ~~l~~~i~~~d~el~QLefq~kr~~~e~~~~~~~~~~~i~~q~~~e~~~---r~e~k~~l~~ql~qv-~~L~lgs 93 (131)
T PF11068_consen 23 QELQEQIQQLDQELQQLEFQGKRMIKEIKKQNAQQIQSIQQQFEQEKQE---RLEQKNQLLQQLEQV-QKLELGS 93 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH-HHS-TT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH-hcCCCCC
Confidence 46788999999999999999988877765 333333 334444 456677788888886 4888884
No 163
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=50.62 E-value=1.4e+02 Score=27.84 Aligned_cols=32 Identities=22% Similarity=0.287 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 001721 795 EEVIKLRAQVEELTRKSQLQEIELERTTRQLK 826 (1020)
Q Consensus 795 qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ 826 (1020)
.++..|+.|...+..+...++.++++++--++
T Consensus 5 ~~~~~l~~~l~~~~~q~~~l~~~~~~~~~~~~ 36 (106)
T PF01920_consen 5 NKFQELNQQLQQLEQQIQQLERQLRELELTLE 36 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666555555544333
No 164
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=50.54 E-value=74 Score=34.20 Aligned_cols=45 Identities=29% Similarity=0.322 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhh
Q 001721 794 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAK 838 (1020)
Q Consensus 794 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~eE~~k 838 (1020)
.+.|.+..++...|+++.+..+.++++..++++.|+.--.|+.|+
T Consensus 43 ~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g~edLAr 87 (221)
T PF04012_consen 43 RQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAAGREDLAR 87 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 555555556778999999999999999999999998776666664
No 165
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=50.53 E-value=56 Score=27.63 Aligned_cols=37 Identities=11% Similarity=0.345 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 001721 795 EEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAV 831 (1020)
Q Consensus 795 qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~ 831 (1020)
.||-++...+.+++.+-++...+|++.++.+++-+.|
T Consensus 7 n~~~~~~~~i~tvk~en~~i~~~ve~i~envk~ll~l 43 (55)
T PF05377_consen 7 NELPRIESSINTVKKENEEISESVEKIEENVKDLLSL 43 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666777777777777777777777777777665544
No 166
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=49.91 E-value=60 Score=38.98 Aligned_cols=51 Identities=14% Similarity=0.089 Sum_probs=32.4
Q ss_pred CCceeeeecceeEEEEEEcCCCccceeEEEeeccccCHHHHHHHHHHhhhhhhhhhcc
Q 001721 946 GDEWVEQDETGVYITLVALPGGLKDLKRVRFSRKKFSEKQAEQWWAANRARVYQQYNV 1003 (1020)
Q Consensus 946 ~~~~~~~~e~gv~~t~~~~~~g~~~~~rvrf~~~~f~~~~a~~ww~~n~~~~~~~y~~ 1003 (1020)
+..-||+.--| ||. -||.+.+|=--.+|.- ..=|..||.-=..-|-+-+..
T Consensus 291 ~G~vie~~V~G-~V~----~dGK~GiRGrvVsk~G--~ila~A~~AG~l~GiG~~~~~ 341 (475)
T PRK13729 291 NGKTIDMPIKG-HVS----FRGKNGIKGEVVMRNG--KILGWAWGAGFVDGIGQGMER 341 (475)
T ss_pred CCcEEEEEEEE-EEc----cCCcCCCCceEEecch--HHHHHHHHHHHHHHHHHHhhh
Confidence 44568887777 542 4888888877777643 556666776555555554443
No 167
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=49.81 E-value=1.6e+02 Score=39.12 Aligned_cols=47 Identities=21% Similarity=0.208 Sum_probs=38.5
Q ss_pred HHHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhCCCc
Q 001721 817 ELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTAQLKDMAEMLPVG 863 (1020)
Q Consensus 817 ei~~~~~~~~ea~~~a~eE~~k~~aake~iksl~~qlk~~~e~lp~~ 863 (1020)
++..++.+.+|+...+.+|.+|.+.++.-++.|..+|++.-++.--.
T Consensus 488 q~~l~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~ 534 (1317)
T KOG0612|consen 488 QKALLQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKNDNA 534 (1317)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44446788999999999999999999999999999999885554443
No 168
>PRK10884 SH3 domain-containing protein; Provisional
Probab=49.72 E-value=96 Score=33.37 Aligned_cols=27 Identities=11% Similarity=0.273 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001721 794 SEEVIKLRAQVEELTRKSQLQEIELER 820 (1020)
Q Consensus 794 ~qev~~l~~qv~~L~~~~~~~~~ei~~ 820 (1020)
.+|+.+|+++..++.++.++...|+|.
T Consensus 99 e~el~~l~~~l~~~~~~~~~~~~~l~~ 125 (206)
T PRK10884 99 ENQVKTLTDKLNNIDNTWNQRTAEMQQ 125 (206)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 555555555555555444444444433
No 169
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=49.38 E-value=76 Score=40.91 Aligned_cols=21 Identities=14% Similarity=0.126 Sum_probs=9.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHH
Q 001721 816 IELERTTRQLKEALAVAGEET 836 (1020)
Q Consensus 816 ~ei~~~~~~~~ea~~~a~eE~ 836 (1020)
.++++++++-++.+.-|.+|+
T Consensus 550 ~~~~~l~~~~~~~~~~a~~ea 570 (771)
T TIGR01069 550 QEMEELKERERNKKLELEKEA 570 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444455555554
No 170
>PRK14155 heat shock protein GrpE; Provisional
Probab=49.34 E-value=76 Score=34.19 Aligned_cols=39 Identities=26% Similarity=0.328 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 001721 794 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVA 832 (1020)
Q Consensus 794 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a 832 (1020)
.+|+.+|++|+..|+.+...+.+|++.++|+.+.-...+
T Consensus 19 ~~~l~~le~e~~elkd~~lR~~AefeN~RKR~~kE~e~~ 57 (208)
T PRK14155 19 AQEIEALKAEVAALKDQALRYAAEAENTKRRAEREMNDA 57 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567778888888888888888888887777776544433
No 171
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=49.04 E-value=27 Score=46.33 Aligned_cols=65 Identities=18% Similarity=0.264 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-------HHHHHHHhhhhhHHHHHHHHHHHHHHHhh
Q 001721 794 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEAL-------AVAGEETAKCRAAKDVIKSLTAQLKDMAE 858 (1020)
Q Consensus 794 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~-------~~a~eE~~k~~aake~iksl~~qlk~~~e 858 (1020)
+++++.+.+|+..|+.+.+.++.||+++++++...- .+..+|-+|...+++-|..|...|+++.+
T Consensus 921 l~~~id~~~E~~rL~K~l~kl~~ei~~~~~kL~N~~F~~kAp~~vve~e~~kl~~~~~~l~~l~~~l~~l~~ 992 (995)
T PTZ00419 921 LDEFIDLKKELAKLEKKLAKLQKSLESYLKKISIPNYEDKVPEDVRKLNDEKIDELNEEIKQLEQAIEELKS 992 (995)
T ss_pred CCcccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566777788888888888888888888885322 45566777777777777777777777664
No 172
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=48.65 E-value=1.5e+02 Score=28.46 Aligned_cols=66 Identities=20% Similarity=0.257 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhh
Q 001721 794 SEEVIKLRAQVEELTRKSQLQEIELERT--TRQLKEALAVAGEETAKCRAAKDVIKSLTAQLKDMAEM 859 (1020)
Q Consensus 794 ~qev~~l~~qv~~L~~~~~~~~~ei~~~--~~~~~ea~~~a~eE~~k~~aake~iksl~~qlk~~~e~ 859 (1020)
..|+.+|+..+....++.+.+|.+++.+ ++.+.+=-..-+|=..+.++..+-|+.++.|+.=|-|+
T Consensus 34 ~~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~lLlE~ 101 (106)
T PF10805_consen 34 REDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQLDLLLEN 101 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 5777777777777777777777777766 55554433333333445566777777777777665554
No 173
>PRK10884 SH3 domain-containing protein; Provisional
Probab=48.53 E-value=1.4e+02 Score=32.18 Aligned_cols=23 Identities=30% Similarity=0.229 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 001721 797 VIKLRAQVEELTRKSQLQEIELE 819 (1020)
Q Consensus 797 v~~l~~qv~~L~~~~~~~~~ei~ 819 (1020)
+.+|+.|+..|+.+.+..+.+.+
T Consensus 95 lp~le~el~~l~~~l~~~~~~~~ 117 (206)
T PRK10884 95 VPDLENQVKTLTDKLNNIDNTWN 117 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHH
Confidence 33444444444444444443333
No 174
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=48.40 E-value=67 Score=30.65 Aligned_cols=45 Identities=31% Similarity=0.325 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 001721 794 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTAQLK 854 (1020)
Q Consensus 794 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~eE~~k~~aake~iksl~~qlk 854 (1020)
.+||.-||.|+..|.++...+++|=-.++ .-+--|.++.|.+||-
T Consensus 66 REEVe~Lk~qI~eL~er~~~Le~EN~lLk----------------~~~spe~L~ql~~~~~ 110 (123)
T KOG4797|consen 66 REEVEVLKEQIRELEERNSALERENSLLK----------------TLASPEQLAQLPAQLS 110 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------hhCCHHHHHHHHHhcc
Confidence 67777777777777777666665544332 3345677777777664
No 175
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=48.27 E-value=80 Score=40.77 Aligned_cols=15 Identities=27% Similarity=0.319 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHH
Q 001721 796 EVIKLRAQVEELTRK 810 (1020)
Q Consensus 796 ev~~l~~qv~~L~~~ 810 (1020)
|+.+++.+++.++++
T Consensus 538 ~~~~~~~e~~~~~~~ 552 (782)
T PRK00409 538 EAEALLKEAEKLKEE 552 (782)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333344444433
No 176
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=48.23 E-value=81 Score=36.54 Aligned_cols=36 Identities=22% Similarity=0.299 Sum_probs=20.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 001721 790 AKRTSEEVIKLRAQVEELTRKSQLQEIELERTTRQL 825 (1020)
Q Consensus 790 l~~~~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~ 825 (1020)
|+++.++|..|+.++..++-++++...|.+.+-+++
T Consensus 10 L~et~~~V~~m~~~L~~~~~~L~~k~~e~e~ll~~i 45 (344)
T PF12777_consen 10 LKETEEQVEEMQEELEEKQPELEEKQKEAEELLEEI 45 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444466777777766666555555555544444444
No 177
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=48.17 E-value=1.3e+02 Score=32.21 Aligned_cols=42 Identities=14% Similarity=0.207 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhh
Q 001721 794 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAK 838 (1020)
Q Consensus 794 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~eE~~k 838 (1020)
.+|..+++.|.+.+..+ .+.+|...+++.++-+.-|.+|+.+
T Consensus 93 L~~Ae~~k~eAe~~~~~---ye~~L~~Ar~eA~~Ii~~Ar~ea~~ 134 (204)
T PRK09174 93 LDQAARLKQEADAAVAA---YEQELAQARAKAHSIAQAAREAAKA 134 (204)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556666666555544 4555666666666555555555443
No 178
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=48.11 E-value=41 Score=27.26 Aligned_cols=26 Identities=27% Similarity=0.295 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001721 798 IKLRAQVEELTRKSQLQEIELERTTR 823 (1020)
Q Consensus 798 ~~l~~qv~~L~~~~~~~~~ei~~~~~ 823 (1020)
.-|+.||++|..|.+.++.-+-+++|
T Consensus 2 ~aLrqQv~aL~~qv~~Lq~~fs~yKK 27 (46)
T PF09006_consen 2 NALRQQVEALQGQVQRLQAAFSQYKK 27 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666555555544443
No 179
>PHA02713 hypothetical protein; Provisional
Probab=47.89 E-value=1.7e+02 Score=36.19 Aligned_cols=19 Identities=5% Similarity=0.225 Sum_probs=12.6
Q ss_pred CCeEEEEEcCCcEEEeccC
Q 001721 349 PWHTAVVTSAGQLFTFGDG 367 (1020)
Q Consensus 349 ~~Hs~aLt~~G~Vy~wG~N 367 (1020)
..+..+..-+|+||.+|-.
T Consensus 342 R~~~~~~~~~g~IYviGG~ 360 (557)
T PHA02713 342 RCRFSLAVIDDTIYAIGGQ 360 (557)
T ss_pred hhceeEEEECCEEEEECCc
Confidence 3334445568899999953
No 180
>PRK14143 heat shock protein GrpE; Provisional
Probab=47.82 E-value=1.6e+02 Score=32.48 Aligned_cols=57 Identities=12% Similarity=0.241 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 001721 794 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTA 851 (1020)
Q Consensus 794 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~eE~~k~~aake~iksl~~ 851 (1020)
.+|+..|+.|+..|+.+.-.+.++++-++|+.+.-..-+.. -+..+.++++|-.+.+
T Consensus 73 ~~el~~l~~e~~elkd~~lR~~AdfeN~RKR~~kE~e~~~~-~a~~~~~~~lLpV~Dn 129 (238)
T PRK14143 73 EQELESLKQELEELNSQYMRIAADFDNFRKRTSREQEDLRL-QLKCNTLSEILPVVDN 129 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhH
Confidence 56777888888888888888888888888887665554444 3445666666655554
No 181
>COG0576 GrpE Molecular chaperone GrpE (heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=47.72 E-value=90 Score=33.20 Aligned_cols=57 Identities=26% Similarity=0.306 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 001721 794 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTA 851 (1020)
Q Consensus 794 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~eE~~k~~aake~iksl~~ 851 (1020)
.+++..|++|+..|+.+.....+|++-++++.+.-..-|. ..+.-+.|++++-.|.+
T Consensus 42 ~~~i~~Le~q~~e~~~~~lr~~Ae~eN~rkR~~re~e~~~-k~a~e~~~~dlLpviDn 98 (193)
T COG0576 42 QQEIAELEAQLEELKDKYLRAQAEFENLRKRTEREREEAK-KYAIEKFAKDLLPVIDN 98 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 5889999999999999999999999988888876554444 33334555665555554
No 182
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=47.72 E-value=97 Score=27.65 Aligned_cols=18 Identities=22% Similarity=0.390 Sum_probs=11.6
Q ss_pred hhhHHHHHHHHHHHHHHH
Q 001721 839 CRAAKDVIKSLTAQLKDM 856 (1020)
Q Consensus 839 ~~aake~iksl~~qlk~~ 856 (1020)
..+.++=|++|-.+|+++
T Consensus 55 ~~~~~~rl~~LL~kl~~v 72 (72)
T PF06005_consen 55 RNAWQERLRSLLGKLEEV 72 (72)
T ss_dssp HHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHhhhcC
Confidence 455777788887777653
No 183
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=47.38 E-value=1.1e+02 Score=33.81 Aligned_cols=14 Identities=21% Similarity=0.418 Sum_probs=7.6
Q ss_pred HHHHHHHHHHhhhC
Q 001721 847 KSLTAQLKDMAEML 860 (1020)
Q Consensus 847 ksl~~qlk~~~e~l 860 (1020)
+-|+-.|..|.+.|
T Consensus 101 ~~l~p~m~~m~~~L 114 (251)
T PF11932_consen 101 QELVPLMEQMIDEL 114 (251)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444555666665
No 184
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=47.32 E-value=94 Score=34.59 Aligned_cols=33 Identities=24% Similarity=0.448 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 001721 795 EEVIKLRAQVEELTRKSQLQEIELERTTRQLKE 827 (1020)
Q Consensus 795 qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~e 827 (1020)
..+..|+.+++.++++.+....+|++.+++++.
T Consensus 70 ~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~ 102 (302)
T PF10186_consen 70 ERLERLRERIERLRKRIEQKRERLEELRESLEQ 102 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444443
No 185
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=47.21 E-value=31 Score=30.60 Aligned_cols=29 Identities=34% Similarity=0.391 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001721 794 SEEVIKLRAQVEELTRKSQLQEIELERTT 822 (1020)
Q Consensus 794 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~ 822 (1020)
.+|-..|++||..|.++.+.++..++++.
T Consensus 41 ~~~~a~L~~qv~~Ls~qv~~Ls~ql~rLs 69 (70)
T PF04899_consen 41 SQENAALSEQVNNLSQQVQRLSEQLERLS 69 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 66777888899999999999988888864
No 186
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=47.09 E-value=96 Score=30.47 Aligned_cols=62 Identities=21% Similarity=0.373 Sum_probs=46.7
Q ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 001721 794 SEEVIKLRAQV---EELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTAQLKD 855 (1020)
Q Consensus 794 ~qev~~l~~qv---~~L~~~~~~~~~ei~~~~~~~~ea~~~a~eE~~k~~aake~iksl~~qlk~ 855 (1020)
.+|+.+|-.++ ..+..+.+.+..+++.++++.+-+.-|-+|=++.....+-=|..|..-+|+
T Consensus 50 ~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~DlK~myr~ 114 (120)
T PF12325_consen 50 REEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELLGEKSEEVEELRADVQDLKEMYRE 114 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence 78888887755 556677888889999999999999999999888766655555555444443
No 187
>PF00169 PH: PH domain; InterPro: IPR001849 The pleckstrin homology (PH) domain is a domain of about 100 residues that occurs in a wide range of proteins involved in intracellular signalling or as constituents of the cytoskeleton [, , , , , , ]. The pleckstrin homology domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids. The 3D structure of several PH domains has been determined []. All known cases have a common structure consisting of two perpendicular anti-parallel beta sheets, followed by a C-terminal amphipathic helix. The loops connecting the beta-strands differ greatly in length, making the PH domain relatively difficult to detect. There are no totally invariant residues within the PH domain. Proteins reported to contain one more PH domains belong to the following families: Pleckstrin, the protein where this domain was first detected, is the major substrate of protein kinase C in platelets. Pleckstrin is one of the rare proteins to contains two PH domains. Ser/Thr protein kinases such as the Akt/Rac family, the beta-adrenergic receptor kinases, the mu isoform of PKC and the trypanosomal NrkA family. Tyrosine protein kinases belonging to the Btk/Itk/Tec subfamily. Insulin Receptor Substrate 1 (IRS-1). Regulators of small G-proteins like guanine nucleotide releasing factor GNRP (Ras-GRF) (which contains 2 PH domains), guanine nucleotide exchange proteins like vav, dbl, SoS and Saccharomyces cerevisiae CDC24, GTPase activating proteins like rasGAP and BEM2/IPL2, and the human break point cluster protein bcr. Cytoskeletal proteins such as dynamin (see IPR001401 from INTERPRO), Caenorhabditis elegans kinesin-like protein unc-104 (see IPR001752 from INTERPRO), spectrin beta-chain, syntrophin (2 PH domains) and S. cerevisiae nuclear migration protein NUM1. Mammalian phosphatidylinositol-specific phospholipase C (PI-PLC) (see IPR000909 from INTERPRO) isoforms gamma and delta. Isoform gamma contains two PH domains, the second one is split into two parts separated by about 400 residues. Oxysterol binding proteins OSBP, S. cerevisiae OSH1 and YHR073w. Mouse protein citron, a putative rho/rac effector that binds to the GTP-bound forms of rho and rac. Several S. cerevisiae proteins involved in cell cycle regulation and bud formation like BEM2, BEM3, BUD4 and the BEM1-binding proteins BOI2 (BEB1) and BOI1 (BOB1). C. elegans protein MIG-10. C. elegans hypothetical proteins C04D8.1, K06H7.4 and ZK632.12. S. cerevisiae hypothetical proteins YBR129c and YHR155w. ; GO: 0005515 protein binding; PDB: 1DYN_B 2DYN_B 3SNH_A 3ZYS_C 1X05_A 2I5F_A 1ZM0_B 1XX0_A 2I5C_C 3A8P_D ....
Probab=47.00 E-value=16 Score=32.86 Aligned_cols=38 Identities=16% Similarity=0.357 Sum_probs=33.5
Q ss_pred ccccceEEEEecCc-ccceeecCcccchhhhhhhHhhhc
Q 001721 14 EKEYQSFSLIYNDR-SLDLICKDKDEAEVWFTGLKALIS 51 (1020)
Q Consensus 14 ~~~~~sfsl~~~~~-~ld~ickd~~~~~~w~~~l~~~~~ 51 (1020)
.+.-..|.|...++ ++-|.|.+.+|.+-|+..|+..|+
T Consensus 66 ~~~~~~f~i~~~~~~~~~~~~~s~~~~~~W~~~i~~~~~ 104 (104)
T PF00169_consen 66 KKRKNCFEITTPNGKSYLFSAESEEERKRWIQAIQKAIK 104 (104)
T ss_dssp SSSSSEEEEEETTSEEEEEEESSHHHHHHHHHHHHHHHC
T ss_pred cCCCcEEEEEeCCCcEEEEEcCCHHHHHHHHHHHHHHhC
Confidence 35567899999776 999999999999999999999874
No 188
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=46.79 E-value=54 Score=31.39 Aligned_cols=30 Identities=10% Similarity=0.145 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001721 794 SEEVIKLRAQVEELTRKSQLQEIELERTTR 823 (1020)
Q Consensus 794 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~ 823 (1020)
.+|+..++.|+..|+++-+.+..||++++.
T Consensus 33 ~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 33 NDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 455555555555555555555555555543
No 189
>PF02646 RmuC: RmuC family; InterPro: IPR003798 This protein contains several bacterial RmuC DNA recombination proteins. The function of the RMUC protein is unknown but it is suspected that it is either a structural protein that protects DNA against nuclease action, or is itself involved in DNA cleavage at the regions of DNA secondary structures []. Proteins in this family are predicted to contain a central endonuclease-like fold domain, surrounded by coiled coils, consistent with a direct role in DNA cleavage [, ].
Probab=46.72 E-value=73 Score=36.27 Aligned_cols=94 Identities=20% Similarity=0.201 Sum_probs=0.0
Q ss_pred cchhhhhhhh----HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhHH------------------------------
Q 001721 784 KIVVDDAKRT----SEEVIKLRAQVEELTRKS---QLQEIELERTTRQLK------------------------------ 826 (1020)
Q Consensus 784 ~~~~~~l~~~----~qev~~l~~qv~~L~~~~---~~~~~ei~~~~~~~~------------------------------ 826 (1020)
+...+.+++. .++..+|+.|++.|.+.- +.+..++..+++-++
T Consensus 16 ~~~~~~l~~~~~~~~~~~~~L~~~l~~l~~~~~~~~~l~~~~~~L~~aL~~~k~rG~wGE~~Le~iLe~~gl~~~~~y~~ 95 (304)
T PF02646_consen 16 EKFEKRLEESFEQRSEEFGSLKEQLKQLSEANGEIQQLSQEASNLTSALKNSKTRGNWGEMQLERILEDSGLPEGCDYET 95 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHcCCCcccchhh
Q ss_pred ------------------------------------HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhh----CCCcccc
Q 001721 827 ------------------------------------EALAVAGEETAKCRAAKDVIKSLTAQLKDMAEM----LPVGAVR 866 (1020)
Q Consensus 827 ------------------------------------ea~~~a~eE~~k~~aake~iksl~~qlk~~~e~----lp~~~~~ 866 (1020)
+.+.=|.+|..|-++.|++++++..++|++++| ++++...
T Consensus 96 Q~~~~~~~~~~rpD~vI~LP~~~~i~IDSK~pl~~y~~~~~a~~~~~~~~~~k~~~~~vr~hi~~Ls~K~Y~~i~~~~t~ 175 (304)
T PF02646_consen 96 QVSLDEDGNGLRPDFVIHLPGGRHIPIDSKFPLEAYERYIEAEDEEEREAALKEHAKSVRKHIKELSSKDYWNIIPPNTP 175 (304)
T ss_pred cccccCCCCCcCceEEEEcCCCCEEEEecCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCccCCCCCC
Q ss_pred CCCCCCCCCCC
Q 001721 867 NSNSFHSSPTP 877 (1020)
Q Consensus 867 ~~~~~~~~~~~ 877 (1020)
..-.+-.|+++
T Consensus 176 dfvimFiP~E~ 186 (304)
T PF02646_consen 176 DFVIMFIPSES 186 (304)
T ss_pred CEEEEEecChH
No 190
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=46.69 E-value=57 Score=32.49 Aligned_cols=45 Identities=24% Similarity=0.372 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHH
Q 001721 794 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSL 849 (1020)
Q Consensus 794 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~eE~~k~~aake~iksl 849 (1020)
-+++.+|+.+...|+++.+.+..++..+...+.| .+.++|.|+.|
T Consensus 5 ~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~e-----------~~~~~e~l~~l 49 (140)
T PRK03947 5 EQELEELAAQLQALQAQIEALQQQLEELQASINE-----------LDTAKETLEEL 49 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHhh
Confidence 4567777777777777777777777777666666 56677777744
No 191
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=46.56 E-value=27 Score=45.58 Aligned_cols=63 Identities=22% Similarity=0.323 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-------HHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 001721 794 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEAL-------AVAGEETAKCRAAKDVIKSLTAQLKDM 856 (1020)
Q Consensus 794 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~-------~~a~eE~~k~~aake~iksl~~qlk~~ 856 (1020)
.+.++.+.+|+..|+.+.+.++.||+++++++...- .+..+|-+|....++-|+.|..+|+.|
T Consensus 803 l~~~id~~~e~~rL~K~l~kl~~ei~~~~~kL~n~~F~~KAP~~vve~e~~kl~~~~~~~~~l~~~l~~l 872 (874)
T PRK05729 803 LEGLIDVEAELARLEKELAKLEKEIERVEKKLSNEGFVAKAPEEVVEKEREKLAEYEEKLAKLKERLARL 872 (874)
T ss_pred CCCccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444555666777777777777888888887776433 345566667677777777777766665
No 192
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=46.55 E-value=60 Score=28.55 Aligned_cols=31 Identities=23% Similarity=0.358 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001721 794 SEEVIKLRAQVEELTRKSQLQEIELERTTRQ 824 (1020)
Q Consensus 794 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~ 824 (1020)
+.-+.-|+-+|+.|+++-..+..|.|.++..
T Consensus 17 vdTI~LLQmEieELKEknn~l~~e~q~~q~~ 47 (79)
T COG3074 17 IDTITLLQMEIEELKEKNNSLSQEVQNAQHQ 47 (79)
T ss_pred HHHHHHHHHHHHHHHHHhhHhHHHHHHHHHH
Confidence 4444555556666666666555555544433
No 193
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=46.34 E-value=1.1e+02 Score=36.43 Aligned_cols=33 Identities=30% Similarity=0.407 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 001721 795 EEVIKLRAQVEELTRKSQLQEIELERTTRQLKE 827 (1020)
Q Consensus 795 qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~e 827 (1020)
+|-..+++....+++++.+++.++.++++++++
T Consensus 368 ~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~ 400 (493)
T KOG0804|consen 368 QESSDLEAEKKIVERKLQQLQTKLKKCQKELKE 400 (493)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445556777788888888888888877764
No 194
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=46.32 E-value=2.1e+02 Score=25.56 Aligned_cols=56 Identities=29% Similarity=0.369 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhC
Q 001721 798 IKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTAQLKDMAEML 860 (1020)
Q Consensus 798 ~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~eE~~k~~aake~iksl~~qlk~~~e~l 860 (1020)
..|.+-+..|+-+.-.|+.=|+.+.-.+-|-|.....=.+| ++.||.+|++|-+..
T Consensus 4 ~~lE~Ri~eLE~r~AfQE~tieeLn~~laEq~~~i~k~q~q-------lr~L~~kl~~~~~~~ 59 (72)
T COG2900 4 MELEARIIELEIRLAFQEQTIEELNDALAEQQLVIDKLQAQ-------LRLLTEKLKDLQPSA 59 (72)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHhhcccc
Confidence 34555677888888888888888888888877655443333 566777777765553
No 195
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=46.32 E-value=91 Score=39.81 Aligned_cols=11 Identities=36% Similarity=1.020 Sum_probs=8.2
Q ss_pred CCcEEEEcCCC
Q 001721 189 LGDVFIWGECT 199 (1020)
Q Consensus 189 ~G~Vy~WG~n~ 199 (1020)
+|++|+|=.+.
T Consensus 41 d~~L~vWd~~e 51 (717)
T PF10168_consen 41 DGDLFVWDSSE 51 (717)
T ss_pred CCEEEEEECCC
Confidence 47888887766
No 196
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=46.10 E-value=89 Score=35.31 Aligned_cols=61 Identities=15% Similarity=0.227 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhh------------hhhHHHHHHHHHHHHHHHhhhCC
Q 001721 801 RAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAK------------CRAAKDVIKSLTAQLKDMAEMLP 861 (1020)
Q Consensus 801 ~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~eE~~k------------~~aake~iksl~~qlk~~~e~lp 861 (1020)
+.|...+..+...++.|+...+++++.+...+..|..= ++.+++.++.+.++|..+..++-
T Consensus 134 ~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~E~~g~~~tg~~G~Gp~~~~~~~~~~~~~~~l~~l~~~~~ 206 (301)
T PF14362_consen 134 DAQIARLDAEIAALQAEIDQLEKEIDRAQQEAQCEIFGTGGTGVPGKGPRYKEKRAQLDAAQAELDTLQAQID 206 (301)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 33667777788888888888888888888888777654 88899999988888887766643
No 197
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=46.09 E-value=52 Score=37.78 Aligned_cols=11 Identities=27% Similarity=0.573 Sum_probs=4.9
Q ss_pred HHHHHHHHHHH
Q 001721 846 IKSLTAQLKDM 856 (1020)
Q Consensus 846 iksl~~qlk~~ 856 (1020)
|+.|.++++.|
T Consensus 278 v~~Lk~~~~~L 288 (325)
T PF08317_consen 278 VKRLKAKVDAL 288 (325)
T ss_pred HHHHHHHHHHH
Confidence 34444444444
No 198
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=45.86 E-value=5e+02 Score=29.53 Aligned_cols=15 Identities=20% Similarity=0.319 Sum_probs=11.5
Q ss_pred EEEEecCCcEEEEeC
Q 001721 468 TVALTTTGHVYTMGS 482 (1020)
Q Consensus 468 tlaLT~dG~Vy~wG~ 482 (1020)
..+..-+|+||++|-
T Consensus 315 ~~~~~~~~~iyv~GG 329 (346)
T TIGR03547 315 GVSVSWNNGVLLIGG 329 (346)
T ss_pred eEEEEcCCEEEEEec
Confidence 345667899999994
No 199
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=45.52 E-value=66 Score=41.21 Aligned_cols=63 Identities=33% Similarity=0.375 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhh
Q 001721 794 SEEVIKLRAQVEE-LTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTAQLKDMAEM 859 (1020)
Q Consensus 794 ~qev~~l~~qv~~-L~~~~~~~~~ei~~~~~~~~ea~~~a~eE~~k~~aake~iksl~~qlk~~~e~ 859 (1020)
.+||.+||.|++. -..+...++..+|++.|-++| |..-=| +|.++..++-+.+.+||..|...
T Consensus 370 ReEve~lr~qL~~ae~~~~~el~e~l~esekli~e-i~~twE--Ekl~ktE~in~erq~~L~~~gis 433 (1714)
T KOG0241|consen 370 REEVEKLREQLEQAEAMKLPELKEKLEESEKLIKE-ITVTWE--EKLRKTEEINQERQAQLESMGIS 433 (1714)
T ss_pred HHHHHHHHHHHhhhhhccchHHHHHHHHHHHHHHH-HHhHHH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777776665 444555555566666655555 222223 37778888889999999999766
No 200
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=45.49 E-value=1e+02 Score=34.87 Aligned_cols=39 Identities=21% Similarity=0.178 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 001721 813 LQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTA 851 (1020)
Q Consensus 813 ~~~~ei~~~~~~~~ea~~~a~eE~~k~~aake~iksl~~ 851 (1020)
..+.+|..+++.+++++..=.+==.+..+.+|=|..|..
T Consensus 100 ~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~ 138 (312)
T PF00038_consen 100 DLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLKQ 138 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHh
Confidence 334455555555555444433333344444444444443
No 201
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=45.40 E-value=67 Score=40.26 Aligned_cols=44 Identities=25% Similarity=0.346 Sum_probs=26.0
Q ss_pred CCcchhhhhhhh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 001721 782 SPKIVVDDAKRT----SEEVIKLRAQVEELTRKSQLQEIELERTTRQL 825 (1020)
Q Consensus 782 ~~~~~~~~l~~~----~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~ 825 (1020)
.-+++++++++. .-||.+|++++..+.+++..+-.|-|++.-|+
T Consensus 469 t~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~Ekq~l~~ql 516 (1118)
T KOG1029|consen 469 TQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQKLAPEKQELNHQL 516 (1118)
T ss_pred hHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 345566666655 66777777777666666555544444443333
No 202
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=45.28 E-value=8.3e+02 Score=31.87 Aligned_cols=123 Identities=14% Similarity=0.068 Sum_probs=64.0
Q ss_pred EEecCcEEEEEEcCCeEEEEeCCCC---CccCCCCCCCCCcceEeeccCCCcEEEEEec-----CCEEEEEEeCCcEEEe
Q 001721 238 IACGGRHAALVTKQGEVFSWGEELG---GRLGHGVDSDVSHPKLIDALKNINVELVACG-----EHHTCAVTLSGDMYTW 309 (1020)
Q Consensus 238 Ia~G~~hs~~Lt~dG~Vy~wG~N~~---GqLG~g~~~~~~~P~~V~~l~~~~I~~VacG-----~~ht~aLT~dG~VysW 309 (1020)
++....+.+++|+.|++|..-...- +..+.|. .....+....+.+|+.+.+- ....+++|.+|.+.-.
T Consensus 542 ~~~t~d~LllfTs~Grv~~l~~~~IP~~~r~~~G~----~i~~ll~L~~~E~Iv~~i~~~~~~~~~~lvliT~~GyiKRi 617 (800)
T TIGR01063 542 VASTHDYLLFFTNRGKVYWLKVYQIPEASRTAKGK----PIVNLLPLQPDERITAILSVKEFDDGLYLFFATKNGVVKKT 617 (800)
T ss_pred EecCCCeEEEEeCCCcEEEEEhhhCcCCCcCCCCc----CHHHhccCCCCCeEEEEEEeccCCCCCEEEEEeCCCEEEEE
Confidence 3445667889999999999843221 1111111 11112333455677776652 2357888999977655
Q ss_pred CCCCCCCcccCCCCCcceecceeeCCCCCCCcEEEEE--ecCCeEEEEEcCCcEEEeccCCCCcCC
Q 001721 310 GGSNCNFGLLGHGNEMSLWLPKKLNGPLEGIHVSSVS--CGPWHTAVVTSAGQLFTFGDGTFGVLG 373 (1020)
Q Consensus 310 G~n~~~~GqLG~g~~~~~~~P~~I~~~l~~~~Iv~Va--cG~~Hs~aLt~~G~Vy~wG~N~~GQLG 373 (1020)
-... +-.... ........-++..++.+. ....+.+++|++|++|.+-....-..|
T Consensus 618 ~l~~--~~~~~r-------~G~~aiklke~D~lv~v~~~~~~d~lll~Ts~Gr~~r~~v~eIp~~g 674 (800)
T TIGR01063 618 SLTE--FSNIRS-------NGIIAIKLDDGDELISVRLTSGDDEVMLGSKNGKAVRFPEEDVRPMG 674 (800)
T ss_pred EhHH--hhhhcc-------CCcccccCCCCCEEEEEEEeCCCCEEEEEECCCcEEEEEhhhcCCcC
Confidence 3221 110000 000000111233455443 334578999999999999655444433
No 203
>PLN02678 seryl-tRNA synthetase
Probab=45.26 E-value=98 Score=37.28 Aligned_cols=76 Identities=13% Similarity=0.123 Sum_probs=49.1
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH---HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhCCC
Q 001721 787 VDDAKRTSEEVIKLRAQVEELTRKSQLQEIELERTTRQLK---EALAVAGEETAKCRAAKDVIKSLTAQLKDMAEMLPV 862 (1020)
Q Consensus 787 ~~~l~~~~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~---ea~~~a~eE~~k~~aake~iksl~~qlk~~~e~lp~ 862 (1020)
.|++-+.-+|..+|+.|++.|+.+..+...+|...+++-+ +..+-+.+=.++.++..+-++.|..+|.++.-+||-
T Consensus 32 id~il~ld~~~r~l~~~~e~lr~erN~~sk~I~~~k~~~~~~~~l~~~~~~Lk~ei~~le~~~~~~~~~l~~~~~~iPN 110 (448)
T PLN02678 32 VDEVIALDKEWRQRQFELDSLRKEFNKLNKEVAKLKIAKEDATELIAETKELKKEITEKEAEVQEAKAALDAKLKTIGN 110 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 4555555777777777777777777777777765333222 222223332345566778888888899988877764
No 204
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=44.98 E-value=89 Score=40.38 Aligned_cols=9 Identities=33% Similarity=0.294 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q 001721 828 ALAVAGEET 836 (1020)
Q Consensus 828 a~~~a~eE~ 836 (1020)
.+.-|.+|+
T Consensus 567 ~~~~~~~~a 575 (782)
T PRK00409 567 LLEEAEKEA 575 (782)
T ss_pred HHHHHHHHH
Confidence 333333333
No 205
>COG3064 TolA Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]
Probab=44.79 E-value=75 Score=35.88 Aligned_cols=23 Identities=35% Similarity=0.382 Sum_probs=14.5
Q ss_pred HHhHHHHHHHHHHHHhhhhhHHH
Q 001721 822 TRQLKEALAVAGEETAKCRAAKD 844 (1020)
Q Consensus 822 ~~~~~ea~~~a~eE~~k~~aake 844 (1020)
+++.+++.+-|.+|++|.||+-|
T Consensus 146 kk~aE~a~aka~aEA~k~Ka~ae 168 (387)
T COG3064 146 KKKAEAAKAKAAAEAAKLKAAAE 168 (387)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHH
Confidence 44555666777788877655433
No 206
>PHA02790 Kelch-like protein; Provisional
Probab=44.75 E-value=1.6e+02 Score=35.66 Aligned_cols=14 Identities=29% Similarity=0.565 Sum_probs=10.8
Q ss_pred EEEeCCcEEEeCCC
Q 001721 299 AVTLSGDMYTWGGS 312 (1020)
Q Consensus 299 aLT~dG~VysWG~n 312 (1020)
++.-+|+||..|..
T Consensus 314 ~v~~~~~iYviGG~ 327 (480)
T PHA02790 314 GVPANNKLYVVGGL 327 (480)
T ss_pred EEEECCEEEEECCc
Confidence 34568999999964
No 207
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=44.73 E-value=1.5e+02 Score=29.94 Aligned_cols=59 Identities=17% Similarity=0.237 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhh
Q 001721 794 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTAQLKDMAEM 859 (1020)
Q Consensus 794 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~eE~~k~~aake~iksl~~qlk~~~e~ 859 (1020)
-.+.++.+++..+|+.+.+.++++|+.++.....+..= ++. +|.+|-.|..|+-.|+..
T Consensus 9 ~~kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~d----aEn---~k~eie~L~~el~~lt~e 67 (140)
T PF10473_consen 9 EEKLKESESEKDSLEDHVESLERELEMSQENKECLILD----AEN---SKAEIETLEEELEELTSE 67 (140)
T ss_pred HHHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHH----HHH---HHHHHHHHHHHHHHHHHH
Confidence 45667777788889999999999998888777665443 222 444555555555555543
No 208
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function. It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.
Probab=44.64 E-value=1.3e+02 Score=28.72 Aligned_cols=48 Identities=19% Similarity=0.243 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhC
Q 001721 799 KLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTAQLKDMAEML 860 (1020)
Q Consensus 799 ~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~eE~~k~~aake~iksl~~qlk~~~e~l 860 (1020)
..-.||..|.+..+.|..+|..++.+++ +--+-|+++-..|..|..||
T Consensus 50 ~qgeqI~kL~e~V~~QGEqIkel~~e~k--------------~qgktL~~I~~~L~~inkRL 97 (102)
T PF01519_consen 50 AQGEQINKLTEKVDKQGEQIKELQVEQK--------------AQGKTLQLILKTLQSINKRL 97 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHH
Confidence 3344888888888888888888777776 45666788888888888886
No 209
>KOG4715 consensus SWI/SNF-related matrix-associated actin-dependent regulator of chromatin [Chromatin structure and dynamics]
Probab=44.42 E-value=79 Score=35.57 Aligned_cols=26 Identities=27% Similarity=0.279 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001721 794 SEEVIKLRAQVEELTRKSQLQEIELE 819 (1020)
Q Consensus 794 ~qev~~l~~qv~~L~~~~~~~~~ei~ 819 (1020)
--.|+-|+.||.+|.---..+|+||+
T Consensus 220 t~RMqvlkrQv~SL~~HQ~KLEaEL~ 245 (410)
T KOG4715|consen 220 TARMQVLKRQVQSLMVHQRKLEAELL 245 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45688888999888766666666664
No 210
>KOG1760 consensus Molecular chaperone Prefoldin, subunit 4 [Posttranslational modification, protein turnover, chaperones]
Probab=44.39 E-value=1.4e+02 Score=29.43 Aligned_cols=64 Identities=19% Similarity=0.310 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHHHHH---HHHHH----------------HHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 001721 794 SEEVIKLRAQVEELTRKSQ---LQEIE----------------LERTTRQLKEALAVAGEETAKCRAAKDVIKSLTAQLK 854 (1020)
Q Consensus 794 ~qev~~l~~qv~~L~~~~~---~~~~e----------------i~~~~~~~~ea~~~a~eE~~k~~aake~iksl~~qlk 854 (1020)
.+|++..+.|+++|..-|+ +.+.+ +.+++.+++|+-.-+-.|.++..+-+|.|++--++||
T Consensus 36 k~dik~~k~~~enledA~~EieL~Dedd~~Ip~~vGdvF~~~~~~~~~~~LEe~ke~l~k~i~~les~~e~I~~~m~~LK 115 (131)
T KOG1760|consen 36 KADIKEAKTEIENLEDASNEIELLDEDDEDIPFKVGDVFIHVKLDKLQDQLEEKKETLEKEIEELESELESISARMDELK 115 (131)
T ss_pred HHHHHHHHHHHHHHHHHHhhHhhcCccccccceehhhhheeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666666654433 33333 5677888888888888899999999999999888998
Q ss_pred HHh
Q 001721 855 DMA 857 (1020)
Q Consensus 855 ~~~ 857 (1020)
.|-
T Consensus 116 ~~L 118 (131)
T KOG1760|consen 116 KVL 118 (131)
T ss_pred HHH
Confidence 763
No 211
>PHA02562 46 endonuclease subunit; Provisional
Probab=44.31 E-value=91 Score=38.28 Aligned_cols=45 Identities=9% Similarity=0.234 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhh
Q 001721 794 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAK 838 (1020)
Q Consensus 794 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~eE~~k 838 (1020)
.+++.+|++|+..|+.+.+.++..+..++++.+....-..+|-.+
T Consensus 180 ~~~i~~l~~~i~~l~~~i~~~~~~i~~~~~~~~~~i~~l~~e~~~ 224 (562)
T PHA02562 180 NQQIQTLDMKIDHIQQQIKTYNKNIEEQRKKNGENIARKQNKYDE 224 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777777777777777766666666666555444444444444
No 212
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=44.30 E-value=1.4e+02 Score=36.77 Aligned_cols=63 Identities=25% Similarity=0.284 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 001721 794 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTAQLKDM 856 (1020)
Q Consensus 794 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~eE~~k~~aake~iksl~~qlk~~ 856 (1020)
.++...|..++..|+.+.+.++.+|+..+++.++=-....+-..+..++++-+..|..|+.++
T Consensus 156 ~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~ 218 (546)
T PF07888_consen 156 LKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAEA 218 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555566666666666666655555544433333333333333444444444443333
No 213
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=44.29 E-value=1.2e+02 Score=35.19 Aligned_cols=36 Identities=28% Similarity=0.353 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 001721 800 LRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEE 835 (1020)
Q Consensus 800 l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~eE 835 (1020)
-..||..|+.+++.+..+|++.++.+++.+.....|
T Consensus 13 t~~~V~~m~~~L~~~~~~L~~k~~e~e~ll~~i~~~ 48 (344)
T PF12777_consen 13 TEEQVEEMQEELEEKQPELEEKQKEAEELLEEIEKE 48 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334777777777777777777666666665554433
No 214
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=44.08 E-value=2.1e+02 Score=29.38 Aligned_cols=39 Identities=10% Similarity=0.130 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 001721 794 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEE 835 (1020)
Q Consensus 794 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~eE 835 (1020)
.++-.++|.+...|..+ .+.+|+.++++.++.+.-|.++
T Consensus 44 Ld~Ae~~r~eA~~l~~e---~e~~L~~Ar~EA~~Ii~~A~~~ 82 (154)
T PRK06568 44 VLKAEKLKEDAALLFEQ---TNAQIKKLETLRSQMIEESNEV 82 (154)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444333 3333344444444333333333
No 215
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=43.85 E-value=7.6 Score=49.39 Aligned_cols=69 Identities=28% Similarity=0.408 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhHHH--------------------HHHHHHHHHhhhhhHHHHHHHHHH
Q 001721 795 EEVIKLRAQVEELTRK---SQLQEIELERTTRQLKE--------------------ALAVAGEETAKCRAAKDVIKSLTA 851 (1020)
Q Consensus 795 qev~~l~~qv~~L~~~---~~~~~~ei~~~~~~~~e--------------------a~~~a~eE~~k~~aake~iksl~~ 851 (1020)
+|+..||-|+..|+++ ++.++.+|+++++|+++ ....-.||..|..+.+.-|..+..
T Consensus 291 ~~a~~LrDElD~lR~~a~r~~klE~~ve~YKkKLed~~~lk~qvk~Lee~N~~l~e~~~~LEeel~~~~~~~~qle~~k~ 370 (713)
T PF05622_consen 291 REARALRDELDELREKADRADKLENEVEKYKKKLEDLEDLKRQVKELEEDNAVLLETKAMLEEELKKARALKSQLEEYKK 370 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4445555577777664 45578899999999884 445667888888888888888888
Q ss_pred HHHHHhhhCCCc
Q 001721 852 QLKDMAEMLPVG 863 (1020)
Q Consensus 852 qlk~~~e~lp~~ 863 (1020)
|+.+|..++-..
T Consensus 371 qi~eLe~~l~~~ 382 (713)
T PF05622_consen 371 QIQELEQKLSEE 382 (713)
T ss_dssp ------------
T ss_pred HHHHHHHHHHHH
Confidence 777776666554
No 216
>cd01235 PH_SETbf Set binding factor Pleckstrin Homology (PH) domain. Set binding factor Pleckstrin Homology (PH) domain. Set binding factor is a myotubularin-related pseudo-phosphatase consisting of a Denn domain, a Gram domain, an inactive phosphatase domain, a SID motif and a C-terminal PH domain. Its PH domain is predicted to bind lipids based upon its ability to respond to phosphatidylinositol 3-kinase .
Probab=43.76 E-value=18 Score=33.40 Aligned_cols=33 Identities=21% Similarity=0.448 Sum_probs=29.7
Q ss_pred ceEEEEecCcccceeecCcccchhhhhhhHhhh
Q 001721 18 QSFSLIYNDRSLDLICKDKDEAEVWFTGLKALI 50 (1020)
Q Consensus 18 ~sfsl~~~~~~ld~ickd~~~~~~w~~~l~~~~ 50 (1020)
..|-+...+|.+=|.|.+..|++-|+..|+++|
T Consensus 69 ~~f~i~t~~r~~~~~a~s~~e~~~Wi~ai~~~i 101 (101)
T cd01235 69 GFFDLKTSKRTYNFLAENINEAQRWKEKIQQCI 101 (101)
T ss_pred eEEEEEeCCceEEEECCCHHHHHHHHHHHHhhC
Confidence 457777799999999999999999999999886
No 217
>PF01093 Clusterin: Clusterin; InterPro: IPR000753 Clusterin is a vertebrate glycoprotein [], the exact function of which is not yet clear. Clusterin expression is complex, appearing as different forms in different cell compartments. One set of proteins is directed for secretion, and other clusterin species are expressed in the cytoplasm and nucleus. The secretory form of the clusterin protein (sCLU) is targeted to the ER by an initial leader peptide. This ~60kDa pre-sCLU protein is further glycosylated and proteolytically cleaved into alpha- and beta-subunits, held together by disulphide bonds. External sCLU is an 80kDa protein and may act as a molecular chaperone, scavenging denatured proteins outside cells following specific stress-induced injury such as heat shock. sCLU possesses nonspecific binding activity to hydrophobic domains of various proteins in vitro []. A specific nuclear form of CLU (nCLU) acts as a pro-death signal, inhibiting cell growth and survival. The nCLU protein has two coiled-coil domains, one at its N terminus that is unable to bind Ku70, and a C-terminal coiled-coil domain that is uniquely able to associate with Ku70 and is minimally required for cell death. Clusterin is synthesized as a precursor polypeptide of about 400 amino acids which is post-translationally cleaved to form two subunits of about 200 amino acids each. The two subunits are linked by five disulphide bonds to form an antiparallel ladder-like structure []. In each of the mature subunits the five cysteines that are involved in disulphide bonds are clustered in domains of about 30 amino acids located in the central part of the subunits. This entry represents the clusterin precursor and related proteins.; GO: 0008219 cell death
Probab=43.71 E-value=1.3e+02 Score=35.86 Aligned_cols=62 Identities=21% Similarity=0.296 Sum_probs=47.8
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhHHHHHH
Q 001721 786 VVDDAKRTSEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIK 847 (1020)
Q Consensus 786 ~~~~l~~~~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~eE~~k~~aake~ik 847 (1020)
+.++.|+++--|++.+.-.+.=.++-..+..-|+++++|-|||+.+|.|=-+|.+++.++-.
T Consensus 14 vdeEik~Al~GvKqMK~~Mek~eeeh~~Lm~tL~k~kk~KeeAl~l~~e~e~kLee~e~~Cn 75 (436)
T PF01093_consen 14 VDEEIKNALNGVKQMKTMMEKTEEEHKELMKTLEKSKKEKEEALKLANEVEEKLEEEEEVCN 75 (436)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666555566666566666677778888999999999999999999999999888654
No 218
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=43.51 E-value=1e+02 Score=27.11 Aligned_cols=16 Identities=13% Similarity=0.405 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHHh
Q 001721 842 AKDVIKSLTAQLKDMA 857 (1020)
Q Consensus 842 ake~iksl~~qlk~~~ 857 (1020)
.++-++.|..+|++|.
T Consensus 37 L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 37 LQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHhc
Confidence 4445555555666554
No 219
>PRK00736 hypothetical protein; Provisional
Probab=43.47 E-value=2.1e+02 Score=25.18 Aligned_cols=16 Identities=19% Similarity=0.355 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHhhh
Q 001721 844 DVIKSLTAQLKDMAEM 859 (1020)
Q Consensus 844 e~iksl~~qlk~~~e~ 859 (1020)
.-++.|..||+++...
T Consensus 40 ~ql~~L~~rl~~~~~~ 55 (68)
T PRK00736 40 KKLDALTERFLSLEEQ 55 (68)
T ss_pred HHHHHHHHHHHHhccc
Confidence 3355566677666544
No 220
>smart00233 PH Pleckstrin homology domain. Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids.
Probab=43.45 E-value=21 Score=31.47 Aligned_cols=35 Identities=29% Similarity=0.472 Sum_probs=31.9
Q ss_pred ccceEEEEecCc-ccceeecCcccchhhhhhhHhhh
Q 001721 16 EYQSFSLIYNDR-SLDLICKDKDEAEVWFTGLKALI 50 (1020)
Q Consensus 16 ~~~sfsl~~~~~-~ld~ickd~~~~~~w~~~l~~~~ 50 (1020)
....|.|+.+++ .|-+.|++.+|++-|+..|+.++
T Consensus 66 ~~~~f~l~~~~~~~~~f~~~s~~~~~~W~~~i~~~~ 101 (102)
T smart00233 66 KPHCFEIKTADRRSYLLQAESEEEREEWVDALRKAI 101 (102)
T ss_pred CceEEEEEecCCceEEEEcCCHHHHHHHHHHHHHhh
Confidence 457999999888 99999999999999999998875
No 221
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=43.29 E-value=1.9e+02 Score=27.68 Aligned_cols=34 Identities=21% Similarity=0.372 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 001721 794 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKE 827 (1020)
Q Consensus 794 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~e 827 (1020)
..+..+++.|+..+.++...++.++.+.+.-++|
T Consensus 9 ~~~~q~~q~~~~~l~~q~~~le~~~~E~~~v~~e 42 (110)
T TIGR02338 9 LAQLQQLQQQLQAVATQKQQVEAQLKEAEKALEE 42 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666667777777777777666666555543
No 222
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=43.18 E-value=61 Score=31.53 Aligned_cols=28 Identities=32% Similarity=0.484 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 001721 800 LRAQVEELTRKSQLQEIELERTTRQLKE 827 (1020)
Q Consensus 800 l~~qv~~L~~~~~~~~~ei~~~~~~~~e 827 (1020)
|..++..|+++++....+++++++++++
T Consensus 78 L~~~~~~l~~~~~~~~~~~~~l~~~~~~ 105 (118)
T PF13815_consen 78 LSSQLEQLEERLQELQQEIEKLKQKLKK 105 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555555544
No 223
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=43.06 E-value=1.2e+02 Score=35.63 Aligned_cols=47 Identities=21% Similarity=0.331 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHhHHH---HHHHHHHHHhhhh
Q 001721 794 SEEVIKLRAQVEELTRKSQLQ-----------------EIELERTTRQLKE---ALAVAGEETAKCR 840 (1020)
Q Consensus 794 ~qev~~l~~qv~~L~~~~~~~-----------------~~ei~~~~~~~~e---a~~~a~eE~~k~~ 840 (1020)
.+|+.+||.+.+.-++++|.. |.|+|-+.+|.+. -+..|.|+++|.|
T Consensus 308 rkelE~lR~~L~kAEkele~nS~wsaP~aLQ~wLq~T~E~E~q~~~kkrqnaekql~~Ake~~eklk 374 (575)
T KOG4403|consen 308 RKELEQLRVALEKAEKELEANSSWSAPLALQKWLQLTHEVEVQYYNKKRQNAEKQLKEAKEMAEKLK 374 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 368888888776555554432 4555555554443 3667888888765
No 224
>PRK14141 heat shock protein GrpE; Provisional
Probab=43.04 E-value=1.1e+02 Score=33.00 Aligned_cols=56 Identities=18% Similarity=0.194 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 001721 794 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLT 850 (1020)
Q Consensus 794 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~eE~~k~~aake~iksl~ 850 (1020)
.+++..|+.|+..|+.+...+-+|++-++|+.+.-...+.+-+. .+.+++++..+.
T Consensus 37 ~~~i~~le~e~~elkd~~lR~~Ae~eN~RKR~~kE~e~~~~~a~-~~~~~dLLpViD 92 (209)
T PRK14141 37 PDPLEALKAENAELKDRMLRLAAEMENLRKRTQRDVADARAYGI-AGFARDMLSVSD 92 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhHh
Confidence 35566677777777777777777777777776654444433332 344455444444
No 225
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=42.88 E-value=1.6e+02 Score=33.78 Aligned_cols=34 Identities=35% Similarity=0.385 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 001721 794 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKE 827 (1020)
Q Consensus 794 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~e 827 (1020)
.+|+.+|..|.+.|.++++.++.|-+++.+++++
T Consensus 49 ~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~ 82 (314)
T PF04111_consen 49 EEELEKLEQEEEELLQELEELEKEREELDQELEE 82 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555666555555555555555443
No 226
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=42.85 E-value=6e+02 Score=29.54 Aligned_cols=18 Identities=28% Similarity=0.449 Sum_probs=13.5
Q ss_pred CEEEEEEeCCcEEEeCCC
Q 001721 295 HHTCAVTLSGDMYTWGGS 312 (1020)
Q Consensus 295 ~ht~aLT~dG~VysWG~n 312 (1020)
.|++++..+|+||++|..
T Consensus 131 ~~~~~~~~~~~IYv~GG~ 148 (376)
T PRK14131 131 GHVAVSLHNGKAYITGGV 148 (376)
T ss_pred ceEEEEeeCCEEEEECCC
Confidence 466555478999999965
No 227
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=42.57 E-value=1.9e+02 Score=32.83 Aligned_cols=33 Identities=15% Similarity=0.212 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhh
Q 001721 826 KEALAVAGEETAKCRAAKDVIKSLTAQLKDMAE 858 (1020)
Q Consensus 826 ~ea~~~a~eE~~k~~aake~iksl~~qlk~~~e 858 (1020)
.+.-..+-+-+++.+.-.+-|+.+-..|+++-.
T Consensus 210 de~he~~ve~~~~~~e~~ee~~~~~~elre~~k 242 (294)
T COG1340 210 DELHEEFVELSKKIDELHEEFRNLQNELRELEK 242 (294)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555556666666665555543
No 228
>PRK14154 heat shock protein GrpE; Provisional
Probab=42.53 E-value=1.3e+02 Score=32.51 Aligned_cols=56 Identities=9% Similarity=0.153 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 001721 795 EEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTA 851 (1020)
Q Consensus 795 qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~eE~~k~~aake~iksl~~ 851 (1020)
+|+..|+.|+..|+.+.-.+.++++.++|..+.-..-+.+-+. .+.+++++-.+.+
T Consensus 59 ~el~~le~e~~elkd~~lRl~ADfeNyRKR~~kE~e~~~~~a~-e~~~~~LLpVlDn 114 (208)
T PRK14154 59 GQLTRMERKVDEYKTQYLRAQAEMDNLRKRIEREKADIIKFGS-KQLITDLLPVADS 114 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhHHhH
Confidence 4667788888888888888888888888777765544443332 3555555554443
No 229
>PRK14140 heat shock protein GrpE; Provisional
Probab=42.51 E-value=1.4e+02 Score=31.72 Aligned_cols=56 Identities=18% Similarity=0.299 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 001721 794 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLT 850 (1020)
Q Consensus 794 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~eE~~k~~aake~iksl~ 850 (1020)
.+++.+|+.++..|+.+.-..-++++-++|+.+.-..-+. +.+.-+.+++++-.|.
T Consensus 43 ~~~i~~l~~ei~elkd~~lR~~Ae~eN~rkR~~rE~~~~~-~~a~~~~~~~LLpvlD 98 (191)
T PRK14140 43 QAKIAELEAKLDELEERYLRLQADFENYKRRIQKENEAAE-KYRAQSLASDLLPALD 98 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 3445566666666666666666666666666665443332 2233345555555444
No 230
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=42.46 E-value=53 Score=28.98 Aligned_cols=34 Identities=15% Similarity=0.230 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 001721 794 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKE 827 (1020)
Q Consensus 794 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~e 827 (1020)
..++.+++.|+..|+++.+.+..|.++++++++.
T Consensus 16 ~~~~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~ 49 (80)
T PF04977_consen 16 YSRYYQLNQEIAELQKEIEELKKENEELKEEIER 49 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788889999999988888888888887776
No 231
>PRK14163 heat shock protein GrpE; Provisional
Probab=41.84 E-value=2.1e+02 Score=30.99 Aligned_cols=35 Identities=17% Similarity=0.239 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 001721 794 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEA 828 (1020)
Q Consensus 794 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea 828 (1020)
.+++..|+.++..|+.+.-.+.+|.+.++|+.+.-
T Consensus 46 ~~~l~~l~~e~~el~d~~lR~~AEfeN~rkR~~kE 80 (214)
T PRK14163 46 TAQLDQVRTALGERTADLQRLQAEYQNYRRRVERD 80 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777777777777766666543
No 232
>PRK14139 heat shock protein GrpE; Provisional
Probab=41.77 E-value=1.7e+02 Score=30.94 Aligned_cols=56 Identities=20% Similarity=0.157 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 001721 794 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLT 850 (1020)
Q Consensus 794 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~eE~~k~~aake~iksl~ 850 (1020)
.+++.+|+.|+..|+.++-.+..|.+-++|+++.-..-+...+. -+.++++|-.+.
T Consensus 38 ~~~l~~le~e~~elkd~~lR~~AefeN~rKR~~kE~e~~~~~a~-~~~~~~LLpv~D 93 (185)
T PRK14139 38 EAELAEAEAKAAELQDSFLRAKAETENVRRRAQEDVAKAHKFAI-ESFAESLLPVKD 93 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhHHh
Confidence 46788899999999999999999999988888875544444333 244444444443
No 233
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=41.64 E-value=23 Score=42.63 Aligned_cols=33 Identities=9% Similarity=0.281 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 001721 794 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKE 827 (1020)
Q Consensus 794 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~e 827 (1020)
.+|+..+| |++.|++|++++++|++.++++|++
T Consensus 24 ~~~~~~~q-kie~L~kql~~Lk~q~~~l~~~v~k 56 (489)
T PF11853_consen 24 ADDIDLLQ-KIEALKKQLEELKAQQDDLNDRVDK 56 (489)
T ss_pred hhhhHHHH-HHHHHHHHHHHHHHhhcccccccch
Confidence 45555556 6777777777776666666666544
No 234
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=41.59 E-value=1.3e+02 Score=38.64 Aligned_cols=35 Identities=29% Similarity=0.357 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 001721 794 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEA 828 (1020)
Q Consensus 794 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea 828 (1020)
++|+..|+.+-+.|.++.++.|..|..++.||.-|
T Consensus 409 ~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVDAA 443 (1243)
T KOG0971|consen 409 NSELEELRRQKERLSRELDQAESTIADLKEQVDAA 443 (1243)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 77777888888888888888888888888888744
No 235
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes the grpE protein. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. The X-ray crystal structure of GrpE in complex with the ATPase domain of DnaK revealed that GrpE is an asymmetric homodimer, bent in a manner that favours extensive contacts with only one DnaKATPase monomer []. GrpE does not actively compete for the atomic positions occupied by the nucleotide. GrpE and ADP mutually reduce one another's affinity for DnaK 200-fold, and ATP instantly dissociates GrpE from DnaK.; GO: 0000774 adenyl-nucleotide exchange factor activity, 0042803 protein homodimerization activity, 0051087 chaperone binding, 0006457 protein folding; PDB: 3A6M_A 4ANI_A 1DKG_B.
Probab=41.26 E-value=83 Score=32.12 Aligned_cols=39 Identities=26% Similarity=0.349 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 001721 794 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVA 832 (1020)
Q Consensus 794 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a 832 (1020)
.+++..|+.|++.|+.+...+.++++.+++++++-..-+
T Consensus 17 ~~~l~~l~~~~~~l~~~~~r~~ae~en~~~r~~~e~~~~ 55 (165)
T PF01025_consen 17 EEELEELEKEIEELKERLLRLQAEFENYRKRLEKEKEEA 55 (165)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777888888888888888888888888876644433
No 236
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=40.74 E-value=1.3e+02 Score=31.44 Aligned_cols=64 Identities=22% Similarity=0.218 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhCC
Q 001721 798 IKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTAQLKDMAEMLP 861 (1020)
Q Consensus 798 ~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~eE~~k~~aake~iksl~~qlk~~~e~lp 861 (1020)
..|.+|...+.|+...+...++..+.-.+++=..+-|=+.|..++|+++++|..+|--+-|--|
T Consensus 84 qeLe~~L~~~~qk~~tl~e~~en~K~~~e~tEer~~el~kklnslkk~~e~lr~el~k~~e~dp 147 (203)
T KOG3433|consen 84 QELESQLATGSQKKATLGESIENRKAGREETEERTDELTKKLNSLKKILESLRWELAKIQETDP 147 (203)
T ss_pred HHHHHHHHHhhhhHhHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCH
Confidence 4567788888888888888888888888887777777777888899999998887765544333
No 237
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=40.67 E-value=1.1e+02 Score=37.83 Aligned_cols=15 Identities=33% Similarity=0.361 Sum_probs=7.1
Q ss_pred hhHHHHHHHHHHHHH
Q 001721 840 RAAKDVIKSLTAQLK 854 (1020)
Q Consensus 840 ~aake~iksl~~qlk 854 (1020)
+.+++.|+...++||
T Consensus 243 ~~~~~~~~~~~~~lk 257 (555)
T TIGR03545 243 QNDKKQLKADLAELK 257 (555)
T ss_pred HHhHHHHHHHHHHHH
Confidence 335555555544444
No 238
>cd01264 PH_melted Melted pleckstrin homology (PH) domain. Melted pleckstrin homology (PH) domain. The melted protein has a C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=40.58 E-value=17 Score=34.49 Aligned_cols=29 Identities=31% Similarity=0.587 Sum_probs=27.5
Q ss_pred eEEEEecCcccceeecCcccchhhhhhhH
Q 001721 19 SFSLIYNDRSLDLICKDKDEAEVWFTGLK 47 (1020)
Q Consensus 19 sfsl~~~~~~ld~ickd~~~~~~w~~~l~ 47 (1020)
.|.+++.+|+.=|++.|..|+|.|+-.|.
T Consensus 70 ~Fei~tp~rt~~l~A~se~e~e~WI~~i~ 98 (101)
T cd01264 70 AFEIFTADKTYILKAKDEKNAEEWLQCLN 98 (101)
T ss_pred EEEEEcCCceEEEEeCCHHHHHHHHHHHH
Confidence 89999999999999999999999998775
No 239
>PRK04406 hypothetical protein; Provisional
Probab=40.55 E-value=2.6e+02 Score=25.19 Aligned_cols=26 Identities=23% Similarity=0.377 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhH
Q 001721 800 LRAQVEELTRKSQLQEIELERTTRQL 825 (1020)
Q Consensus 800 l~~qv~~L~~~~~~~~~ei~~~~~~~ 825 (1020)
+.+.+..|+.+.-.||.-|+.+.+-+
T Consensus 9 le~Ri~~LE~~lAfQE~tIe~LN~~v 34 (75)
T PRK04406 9 LEERINDLECQLAFQEQTIEELNDAL 34 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555544433
No 240
>PRK10698 phage shock protein PspA; Provisional
Probab=40.48 E-value=1.4e+02 Score=32.35 Aligned_cols=41 Identities=22% Similarity=0.213 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhh
Q 001721 798 IKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAK 838 (1020)
Q Consensus 798 ~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~eE~~k 838 (1020)
.+.-++-..|+++.+..+.++++..++++-|+.--.|+-||
T Consensus 48 A~~~A~~k~~er~~~~~~~~~~~~e~kA~~Al~~G~EdLAr 88 (222)
T PRK10698 48 ARALAEKKQLTRRIEQAEAQQVEWQEKAELALRKEKEDLAR 88 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 33334567899999999999999999999998855555444
No 241
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=40.45 E-value=2.3e+02 Score=28.86 Aligned_cols=42 Identities=19% Similarity=0.313 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhh
Q 001721 794 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAK 838 (1020)
Q Consensus 794 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~eE~~k 838 (1020)
.+|..+++.|++.+..+ .+.+|+..+++.++-+.-|.+|+.+
T Consensus 62 l~~Ae~~~~ea~~~~~e---~e~~L~~A~~ea~~ii~~A~~~a~~ 103 (156)
T CHL00118 62 LTKASEILAKANELTKQ---YEQELSKARKEAQLEITQSQKEAKE 103 (156)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556666666555555 3444555555555555555555443
No 242
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=40.32 E-value=2.1e+02 Score=29.92 Aligned_cols=18 Identities=11% Similarity=0.102 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 001721 794 SEEVIKLRAQVEELTRKS 811 (1020)
Q Consensus 794 ~qev~~l~~qv~~L~~~~ 811 (1020)
.++..+++.|++.+..+.
T Consensus 71 l~~Ae~~~~eA~~~~~ey 88 (181)
T PRK13454 71 LAAAEELKQKAVEAEKAY 88 (181)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 555566666665555553
No 243
>PF08537 NBP1: Fungal Nap binding protein NBP1; InterPro: IPR013743 NBP1 is a nuclear protein which has been shown in Saccharomyces cerevisiae (Bakers yeast) to be essential for the G2/M transition of the cell cycle.
Probab=40.03 E-value=89 Score=35.62 Aligned_cols=34 Identities=38% Similarity=0.456 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 001721 794 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKE 827 (1020)
Q Consensus 794 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~e 827 (1020)
...|.-|+.++..|++++..++.|||.++|+|+.
T Consensus 174 ~D~v~LLqkk~~~l~~~l~~~~~eL~~~~k~L~f 207 (323)
T PF08537_consen 174 SDRVILLQKKIDELEERLNDLEKELEITKKDLKF 207 (323)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678889999999999999999999999999988
No 244
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=40.03 E-value=2.2e+02 Score=32.11 Aligned_cols=135 Identities=18% Similarity=0.151 Sum_probs=76.9
Q ss_pred cccCCCCcEEEEcCCCCCCccCCCCCcCCccccccccccceEEecccCCCCEEEEEec---CcEEEEEEcCCeEEEEeCC
Q 001721 184 DDGDSLGDVFIWGECTGDGILGGGIHRSGSYAGVKMDSFVPKAVESAVVLDVQNIACG---GRHAALVTKQGEVFSWGEE 260 (1020)
Q Consensus 184 ~~lds~G~Vy~WG~n~~~GqLG~g~~~~~~~~~~~~~~~~P~~v~~~~~~~I~~Ia~G---~~hs~~Lt~dG~Vy~wG~N 260 (1020)
.+-+.+|.||.=+... |.+|+-+-.. -.+..+..| .-|.+++..||..|.+-..
T Consensus 67 vapapdG~VWft~qg~--gaiGhLdP~t---------------------Gev~~ypLg~Ga~Phgiv~gpdg~~Witd~~ 123 (353)
T COG4257 67 VAPAPDGAVWFTAQGT--GAIGHLDPAT---------------------GEVETYPLGSGASPHGIVVGPDGSAWITDTG 123 (353)
T ss_pred cccCCCCceEEecCcc--ccceecCCCC---------------------CceEEEecCCCCCCceEEECCCCCeeEecCc
Confidence 4558899999888765 7777654321 123334333 3478888899998888543
Q ss_pred -CCCccCCCCCCCCCcceEeeccCCCcEEEEEecCCEEEEEEeCCcEEEeCCCCCCCcccCCCCCcceecceeeCCCCCC
Q 001721 261 -LGGRLGHGVDSDVSHPKLIDALKNINVELVACGEHHTCAVTLSGDMYTWGGSNCNFGLLGHGNEMSLWLPKKLNGPLEG 339 (1020)
Q Consensus 261 -~~GqLG~g~~~~~~~P~~V~~l~~~~I~~VacG~~ht~aLT~dG~VysWG~n~~~~GqLG~g~~~~~~~P~~I~~~l~~ 339 (1020)
.-++++........-|.+ .+.+-++-.+.+++..|+||.-|.+- .+|.|.-........|...
T Consensus 124 ~aI~R~dpkt~evt~f~lp---------~~~a~~nlet~vfD~~G~lWFt~q~G-~yGrLdPa~~~i~vfpaPq------ 187 (353)
T COG4257 124 LAIGRLDPKTLEVTRFPLP---------LEHADANLETAVFDPWGNLWFTGQIG-AYGRLDPARNVISVFPAPQ------ 187 (353)
T ss_pred ceeEEecCcccceEEeecc---------cccCCCcccceeeCCCccEEEeeccc-cceecCcccCceeeeccCC------
Confidence 333333221111111111 23344566788999999999998762 3444432222222222211
Q ss_pred CcEEEEEecCCeEEEEEcCCcEEEe
Q 001721 340 IHVSSVSCGPWHTAVVTSAGQLFTF 364 (1020)
Q Consensus 340 ~~Iv~VacG~~Hs~aLt~~G~Vy~w 364 (1020)
-+.-.-+++|-+|+||.-
T Consensus 188 -------G~gpyGi~atpdGsvwya 205 (353)
T COG4257 188 -------GGGPYGICATPDGSVWYA 205 (353)
T ss_pred -------CCCCcceEECCCCcEEEE
Confidence 123367888999999976
No 245
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=39.88 E-value=44 Score=40.05 Aligned_cols=25 Identities=12% Similarity=0.074 Sum_probs=18.6
Q ss_pred HhhhhhHHHHHHHHHHHHHHHhhhC
Q 001721 836 TAKCRAAKDVIKSLTAQLKDMAEML 860 (1020)
Q Consensus 836 ~~k~~aake~iksl~~qlk~~~e~l 860 (1020)
.+|.+.-++-|+.|.+|++.+..++
T Consensus 103 e~KIkeLEaE~~~Lk~Ql~a~~~~~ 127 (475)
T PRK13729 103 QRRIEKLGQDNAALAEQVKALGANP 127 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcCC
Confidence 4555567888999999997776663
No 246
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=39.82 E-value=2.3e+02 Score=31.72 Aligned_cols=56 Identities=23% Similarity=0.287 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHh
Q 001721 795 EEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTAQLKDMA 857 (1020)
Q Consensus 795 qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~eE~~k~~aake~iksl~~qlk~~~ 857 (1020)
.||..|.+||+.+-.+.+.++.|+.+++.++++ ==.+.+..+|-|+....-|++-+
T Consensus 52 ~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~-------l~~eI~~~~~~I~~r~~~l~~ra 107 (265)
T COG3883 52 NEIESLDNQIEEIQSKIDELQKEIDQSKAEIKK-------LQKEIAELKENIVERQELLKKRA 107 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444433 12234557888887776555544
No 247
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=39.61 E-value=2.8e+02 Score=24.81 Aligned_cols=42 Identities=17% Similarity=0.255 Sum_probs=28.5
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 001721 787 VDDAKRTSEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEA 828 (1020)
Q Consensus 787 ~~~l~~~~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea 828 (1020)
.+-|++.-+.|.+|+.+-+.|..+--.+..-|.++++++++.
T Consensus 4 ~~~l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~ 45 (74)
T PF12329_consen 4 EKKLAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKEL 45 (74)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 344555566677777777777777777777777777777663
No 248
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.55 E-value=12 Score=36.83 Aligned_cols=36 Identities=33% Similarity=0.806 Sum_probs=27.4
Q ss_pred ccccccCCceEeecCCCCcccccccCCCCCCCeeeCccchhh
Q 001721 602 RHNCYNCGLVYCHTCSSKKSVKASMAPNPNKPYRVCDNCFGK 643 (1020)
Q Consensus 602 rhhC~~CG~v~C~~CSs~~~~~~~~~~~~~k~~RVC~~C~~~ 643 (1020)
-|+|..|-.-+|+-|.....+.. +|..-||..|-.+
T Consensus 81 GH~C~YCq~r~CARCGGrv~lrs------NKv~wvcnlc~k~ 116 (169)
T KOG3799|consen 81 GHNCSYCQTRFCARCGGRVSLRS------NKVMWVCNLCRKQ 116 (169)
T ss_pred CcccchhhhhHHHhcCCeeeecc------CceEEeccCCcHH
Confidence 58899999999999987764432 4667799999443
No 249
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=39.53 E-value=59 Score=31.69 Aligned_cols=41 Identities=15% Similarity=0.246 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHH
Q 001721 798 IKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSL 849 (1020)
Q Consensus 798 ~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~eE~~k~~aake~iksl 849 (1020)
.+|.+|.+.|.++.+.+...+..+...+.| .++++++|+.|
T Consensus 2 qql~~q~~ql~~~i~~l~~~i~~l~~~i~e-----------~~~~~~~L~~l 42 (126)
T TIGR00293 2 QQLAAELQILQQQVESLQAQIAALRALIAE-----------LETAIETLEDL 42 (126)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHhc
Confidence 355666677777777777777766666666 45567777555
No 250
>PRK14162 heat shock protein GrpE; Provisional
Probab=39.21 E-value=2.1e+02 Score=30.54 Aligned_cols=57 Identities=19% Similarity=0.241 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 001721 794 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTA 851 (1020)
Q Consensus 794 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~eE~~k~~aake~iksl~~ 851 (1020)
.+++..|+.++..|+.+...+.+|++-++|+.+.-..-+.+.+. .+.+++++-.+.+
T Consensus 45 ~~~l~~l~~e~~elkd~~lR~~AEfeN~rkR~~kE~e~~~~~a~-~~~~~~LLpV~Dn 101 (194)
T PRK14162 45 EKEIADLKAKNKDLEDKYLRSQAEIQNMQNRYAKERAQLIKYES-QSLAKDVLPAMDN 101 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhHHhH
Confidence 45566677777777777777777777777776665444444332 3455555544443
No 251
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=39.17 E-value=1.8e+02 Score=33.51 Aligned_cols=14 Identities=29% Similarity=0.302 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHH
Q 001721 806 ELTRKSQLQEIELE 819 (1020)
Q Consensus 806 ~L~~~~~~~~~ei~ 819 (1020)
.|++++..++.+|+
T Consensus 213 ~lr~eL~~~~~~i~ 226 (325)
T PF08317_consen 213 ALRQELAEQKEEIE 226 (325)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 252
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=39.03 E-value=23 Score=40.27 Aligned_cols=73 Identities=22% Similarity=0.357 Sum_probs=37.6
Q ss_pred EecCCcceeeeeeccccCcCCccCCCCCcCccccccccccccCCceEeecCCCCcccccccCCC-CCCCeeeCccchhhh
Q 001721 566 VCGTSFTAAICLHKWVSGVDQSMCSGCRIPFNFKRKRHNCYNCGLVYCHTCSSKKSVKASMAPN-PNKPYRVCDNCFGKL 644 (1020)
Q Consensus 566 acG~~~T~aL~~~kwvs~~d~s~Cs~C~~~Fs~~~krhhC~~CG~v~C~~CSs~~~~~~~~~~~-~~k~~RVC~~C~~~l 644 (1020)
.||+...+.+....-..|.-.-.|+.|...+.+ +|..|.+||. +.+.....+... ..-.+-+|+.|..-+
T Consensus 192 vCGs~P~~s~v~~~~~~G~RyL~CslC~teW~~--~R~~C~~Cg~-------~~~l~y~~~~~~~~~~r~e~C~~C~~Yl 262 (309)
T PRK03564 192 VCGSMPVSSVVQIGTTQGLRYLHCNLCESEWHV--VRVKCSNCEQ-------SGKLHYWSLDSEQAAVKAESCGDCGTYL 262 (309)
T ss_pred CCCCcchhheeeccCCCCceEEEcCCCCCcccc--cCccCCCCCC-------CCceeeeeecCCCcceEeeecccccccc
Confidence 366665544332111234444568888765444 4677888874 122222222211 112345899997776
Q ss_pred hcc
Q 001721 645 TKA 647 (1020)
Q Consensus 645 ~~~ 647 (1020)
+..
T Consensus 263 K~~ 265 (309)
T PRK03564 263 KIL 265 (309)
T ss_pred eec
Confidence 654
No 253
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=39.02 E-value=1.7e+02 Score=27.53 Aligned_cols=60 Identities=25% Similarity=0.313 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 001721 794 SEEVIKLRAQVEELTRKSQLQE---------IELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTAQLKD 855 (1020)
Q Consensus 794 ~qev~~l~~qv~~L~~~~~~~~---------~ei~~~~~~~~ea~~~a~eE~~k~~aake~iksl~~qlk~ 855 (1020)
.+|+.+|+.+++.|........ .||+.+.++++.|+..++. .|-+.-.+-|+.|..+.+.
T Consensus 18 ~~e~~~L~~~~~~L~~~~R~~~GedL~~Ls~~eL~~LE~~Le~aL~~VR~--rK~~~l~~~i~~l~~ke~~ 86 (100)
T PF01486_consen 18 QQEIAKLRKENESLQKELRHLMGEDLESLSLKELQQLEQQLESALKRVRS--RKDQLLMEQIEELKKKERE 86 (100)
T ss_pred HHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHhhhhhHHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 7899999999999887765544 6899999999998887764 4555566666666654443
No 254
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=38.93 E-value=1.5e+02 Score=32.61 Aligned_cols=52 Identities=27% Similarity=0.355 Sum_probs=32.5
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhh
Q 001721 787 VDDAKRTSEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAK 838 (1020)
Q Consensus 787 ~~~l~~~~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~eE~~k 838 (1020)
.++|..-..|+.+|+.+.+.|..+...++.++-..++.++++++-+.++---
T Consensus 109 e~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e~~~~ 160 (239)
T COG1579 109 EDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIREEGQE 160 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444566666666666666666666666666666666666666664433
No 255
>PRK00846 hypothetical protein; Provisional
Probab=38.70 E-value=1.4e+02 Score=27.14 Aligned_cols=53 Identities=15% Similarity=0.057 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhCCCcc
Q 001721 805 EELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTAQLKDMAEMLPVGA 864 (1020)
Q Consensus 805 ~~L~~~~~~~~~ei~~~~~~~~ea~~~a~eE~~k~~aake~iksl~~qlk~~~e~lp~~~ 864 (1020)
..+.++.+.+|..|--...-+++=-...++ --..|.-|+.||+-|.+||-.-.
T Consensus 9 ~~le~Ri~~LE~rlAfQe~tIe~LN~~v~~-------qq~~I~~L~~ql~~L~~rL~~~~ 61 (77)
T PRK00846 9 QALEARLVELETRLSFQEQALTELSEALAD-------ARLTGARNAELIRHLLEDLGKVR 61 (77)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhc
Confidence 356677777777776665555553333222 44578888889999988887643
No 256
>PRK14151 heat shock protein GrpE; Provisional
Probab=38.40 E-value=1.6e+02 Score=30.87 Aligned_cols=57 Identities=16% Similarity=0.202 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 001721 794 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTA 851 (1020)
Q Consensus 794 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~eE~~k~~aake~iksl~~ 851 (1020)
.+++..|+.|+..|+.+.-...+|++-++|+.+.-...+.+-+. .+.+++++-.+.+
T Consensus 26 ~~~i~~le~e~~el~d~~lR~~Ae~eN~rkR~~kE~e~~~~~a~-~~~~~~LLpv~Dn 82 (176)
T PRK14151 26 TARVQELEEQLAAAKDQSLRAAADLQNVRRRAEQDVEKAHKFAL-EKFAGDLLPVVDS 82 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhHHhH
Confidence 46677788888888888888888888888877765544444333 2445555544443
No 257
>COG4741 Predicted secreted endonuclease distantly related to archaeal Holliday junction resolvase [Nucleotide transport and metabolism]
Probab=38.23 E-value=2.3e+02 Score=28.89 Aligned_cols=28 Identities=32% Similarity=0.380 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001721 797 VIKLRAQVEELTRKSQLQEIELERTTRQ 824 (1020)
Q Consensus 797 v~~l~~qv~~L~~~~~~~~~ei~~~~~~ 824 (1020)
+..|+..+.+|+++.+.+..+|+..=|+
T Consensus 17 l~~l~~~Ir~lq~~~e~k~~~l~e~l~~ 44 (175)
T COG4741 17 LYLLRAYIRSLQGKVESKARELEETLQK 44 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677778888777777666554333
No 258
>PRK06746 peptide chain release factor 2; Provisional
Probab=38.22 E-value=1.9e+02 Score=33.26 Aligned_cols=49 Identities=16% Similarity=0.230 Sum_probs=27.3
Q ss_pred HHHHHHhHHHHHHHHHHH--HhhhhhHHHHHHHHHHHHHHHh-hhCCCcccc
Q 001721 818 LERTTRQLKEALAVAGEE--TAKCRAAKDVIKSLTAQLKDMA-EMLPVGAVR 866 (1020)
Q Consensus 818 i~~~~~~~~ea~~~a~eE--~~k~~aake~iksl~~qlk~~~-e~lp~~~~~ 866 (1020)
+....+.++++..|+.|| .+=..-|++-|+.|..+|+.+. +.||.+..+
T Consensus 33 ~~~~~~d~~~~~el~~~~~d~e~~~~a~~e~~~l~~~l~~le~~~l~~~~~D 84 (326)
T PRK06746 33 LDETFENLEITHELLKEEYDEDLHEELESEVKGLIQEMNEYELQLLLSDPYD 84 (326)
T ss_pred HHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCc
Confidence 344445555555555332 2223456677778888777775 456765433
No 259
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=38.15 E-value=1.3e+02 Score=31.83 Aligned_cols=61 Identities=26% Similarity=0.309 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 001721 794 SEEVIKLRAQVEELTRKSQLQEIELERT----------------TRQLKEALAVAGEETAKCRAAKDVIKSLTAQLK 854 (1020)
Q Consensus 794 ~qev~~l~~qv~~L~~~~~~~~~ei~~~----------------~~~~~ea~~~a~eE~~k~~aake~iksl~~qlk 854 (1020)
.+-|.+|++.|...+++|..++..+... ...+++|...-.||=-||..--+|.--|-.||.
T Consensus 15 a~Lv~~LQ~KV~qYr~rc~ele~~l~~~~~l~~~~~~~~~~~e~s~dLe~~l~rLeEEqqR~~~L~qvN~lLReQLE 91 (182)
T PF15035_consen 15 AQLVQRLQAKVLQYRKRCAELEQQLSASQVLESPSQRRRSEEEHSPDLEEALIRLEEEQQRSEELAQVNALLREQLE 91 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCcCcccccccccccCcccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 8899999999999999999999988432 356778888888888888874444444444333
No 260
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=38.12 E-value=3.3e+02 Score=27.97 Aligned_cols=54 Identities=15% Similarity=0.146 Sum_probs=31.6
Q ss_pred hhhhhh---HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHhHHHHHHHHHHHHhhhhh
Q 001721 788 DDAKRT---SEEVIKLRAQVEELTRKSQLQEIEL-----ERTTRQLKEALAVAGEETAKCRA 841 (1020)
Q Consensus 788 ~~l~~~---~qev~~l~~qv~~L~~~~~~~~~ei-----~~~~~~~~ea~~~a~eE~~k~~a 841 (1020)
++|.+. .+|..+|.++.+..-++.+..-.+| +..++..+++..-|.+|+.+.++
T Consensus 42 ~~Ld~Ae~~r~eA~~l~~e~e~~L~~Ar~EA~~Ii~~A~~~a~~~~~ea~~eA~~ea~r~~~ 103 (154)
T PRK06568 42 EKVLKAEKLKEDAALLFEQTNAQIKKLETLRSQMIEESNEVTKKIIQEKTKEIEEFLEHKKS 103 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444 8888888886665555554444333 23344555666777777665443
No 261
>PRK14011 prefoldin subunit alpha; Provisional
Probab=38.04 E-value=77 Score=32.16 Aligned_cols=34 Identities=21% Similarity=0.115 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 001721 794 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKE 827 (1020)
Q Consensus 794 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~e 827 (1020)
+||+.++..+.+.|.++.+.+..+|+.++.-..|
T Consensus 2 ~~elq~~~~~l~~~~~qie~L~~si~~L~~a~~e 35 (144)
T PRK14011 2 NEELQNQFMALEVYNQQVQKLQEELSSIDMMKME 35 (144)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6888888888889988888888888776554443
No 262
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=37.94 E-value=1.2e+02 Score=28.17 Aligned_cols=24 Identities=25% Similarity=0.393 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHH
Q 001721 803 QVEELTRKSQLQEIELERTTRQLK 826 (1020)
Q Consensus 803 qv~~L~~~~~~~~~ei~~~~~~~~ 826 (1020)
+|..|..+...+..|++.++++++
T Consensus 50 ~v~~L~~e~~~l~~E~e~L~~~l~ 73 (87)
T PF12709_consen 50 KVDELENENKALKRENEQLKKKLD 73 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444554444443
No 263
>PF15456 Uds1: Up-regulated During Septation
Probab=37.92 E-value=1.8e+02 Score=28.83 Aligned_cols=40 Identities=18% Similarity=0.278 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-HHHHHHH
Q 001721 794 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKE-ALAVAGE 834 (1020)
Q Consensus 794 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~e-a~~~a~e 834 (1020)
.+||..|+.|...|..+|+.....|. +..|+.+ |..|+.-
T Consensus 21 ~eEVe~LKkEl~~L~~R~~~lr~kl~-le~k~RdAa~sl~~l 61 (124)
T PF15456_consen 21 FEEVEELKKELRSLDSRLEYLRRKLA-LESKIRDAAHSLSRL 61 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHh
Confidence 78899999999999999999998888 5555554 3444444
No 264
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=37.65 E-value=1.6e+02 Score=26.87 Aligned_cols=29 Identities=21% Similarity=0.343 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001721 794 SEEVIKLRAQVEELTRKSQLQEIELERTT 822 (1020)
Q Consensus 794 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~ 822 (1020)
.+|+..||..+..|..+.+....|-++++
T Consensus 22 i~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~ 50 (80)
T PF10224_consen 22 IQEILELQDSLEALSDRVEEVKEENEKLE 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666666666665555554444443
No 265
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=37.59 E-value=3e+02 Score=37.06 Aligned_cols=45 Identities=22% Similarity=0.338 Sum_probs=30.9
Q ss_pred cceeeccc-cCCCcEEEEEecCcEE--EEEeCCCeEEEEeCCCCCCCC
Q 001721 497 LPTRVEGK-LTKNFVEEIACGDYHV--AVLTSRTEVYTWGKGANGRLG 541 (1020)
Q Consensus 497 ~P~~v~~~-l~~~~I~~Ia~G~~Hs--laLTsdG~VytWG~n~~GQLG 541 (1020)
.|..+..+ ...+.|.+|+.+.... +++++.|.|-+|=-+.+|.-+
T Consensus 231 vPs~~~~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~~G~~~ 278 (1311)
T KOG1900|consen 231 VPSLLSVPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGGNGLGG 278 (1311)
T ss_pred hhhhhcCCCCCCCcceeeEeccccceeeeeccCceEEEEEccCCCccc
Confidence 45533322 2356799999998875 556788998888777776655
No 266
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=37.53 E-value=78 Score=33.66 Aligned_cols=58 Identities=21% Similarity=0.259 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhh
Q 001721 795 EEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTAQLKDMAE 858 (1020)
Q Consensus 795 qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~eE~~k~~aake~iksl~~qlk~~~e 858 (1020)
-|+++|+.|...|..+++..+.+.........+.++++.+|.+- .++--..||.++.+
T Consensus 96 wEevrLkrELa~Le~~l~~~~~~~~~~~~~~~~~~~lvk~e~Eq------LL~YK~~ql~~~~~ 153 (195)
T PF12761_consen 96 WEEVRLKRELAELEEKLSKVEQAAESRRSDTDSKPALVKREFEQ------LLDYKERQLRELEE 153 (195)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcchHHHHHHHHHH------HHHHHHHHHHhhhc
Confidence 35666777777666666666665555444445577777777543 55555556666653
No 267
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=37.37 E-value=2e+02 Score=24.60 Aligned_cols=56 Identities=21% Similarity=0.246 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhh
Q 001721 794 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTAQLKDMAE 858 (1020)
Q Consensus 794 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~eE~~k~~aake~iksl~~qlk~~~e 858 (1020)
.+++..++.-+..|+.+...---.||-..-=++. .|...|+|.|+.++.+++++++
T Consensus 3 ~~~~~~~~~~~~~lR~~RHD~~NhLqvI~gllql---------g~~~~a~eYi~~~~~~~~~~s~ 58 (62)
T PF14689_consen 3 KQQLEELEELIDSLRAQRHDFLNHLQVIYGLLQL---------GKYEEAKEYIKELSKDLQQESE 58 (62)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---------T-HHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHC---------CCHHHHHHHHHHHHHHHHHHHH
Confidence 3566667777777777777776777766554443 4455699999999999998854
No 268
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=37.34 E-value=1.6e+02 Score=34.38 Aligned_cols=64 Identities=9% Similarity=0.125 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHhhhhhHHHHHHHHHHHHHHHhhhC
Q 001721 797 VIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAG-EETAKCRAAKDVIKSLTAQLKDMAEML 860 (1020)
Q Consensus 797 v~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~-eE~~k~~aake~iksl~~qlk~~~e~l 860 (1020)
+..+++++..++.+.+....+++.++.+++++..-.. +...+...+++-|+.+.++|..+.++|
T Consensus 205 ~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l 269 (423)
T TIGR01843 205 RAEAQGELGRLEAELEVLKRQIDELQLERQQIEQTFREEVLEELTEAQARLAELRERLNKARDRL 269 (423)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444443332222 222334455556666666555544433
No 269
>PRK14160 heat shock protein GrpE; Provisional
Probab=37.27 E-value=1.7e+02 Score=31.56 Aligned_cols=64 Identities=22% Similarity=0.224 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhCCC
Q 001721 797 VIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTAQLKDMAEMLPV 862 (1020)
Q Consensus 797 v~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~eE~~k~~aake~iksl~~qlk~~~e~lp~ 862 (1020)
+..|+.++..|+++.+.++.+++.++.++.- +.|-=|--|.+++||.-+....-...++..|-|
T Consensus 56 ~~~l~~e~~~l~~~l~~l~~e~~elkd~~lR--~~AefeN~RKR~~kE~e~~~~~a~e~~~~~LLp 119 (211)
T PRK14160 56 IEELKDENNKLKEENKKLENELEALKDRLLR--TVAEYDNYRKRTAKEKEGIYSDACEDVLKELLP 119 (211)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3455556666666666666666665544432 344556666777777766666666666555333
No 270
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.15 E-value=1.4 Score=50.38 Aligned_cols=62 Identities=24% Similarity=0.561 Sum_probs=0.0
Q ss_pred cccCcCCccCCCCCcCcccccccccccc--CCceEeecCCCCcccccccCCCCCCCeeeCccchhhhh
Q 001721 580 WVSGVDQSMCSGCRIPFNFKRKRHNCYN--CGLVYCHTCSSKKSVKASMAPNPNKPYRVCDNCFGKLT 645 (1020)
Q Consensus 580 wvs~~d~s~Cs~C~~~Fs~~~krhhC~~--CG~v~C~~CSs~~~~~~~~~~~~~k~~RVC~~C~~~l~ 645 (1020)
|-.+.+...|..|...|.-.+...+|.. |+.+||-.|+ +..++.+.. ..|..||+-|++.+.
T Consensus 462 ~ql~~~ve~c~~~~aS~~slk~e~erl~qq~eqi~~~~~~--Katvp~l~~--e~~akv~rlq~eL~~ 525 (542)
T KOG0993|consen 462 WQLDDDVEQCSNCDASFASLKVEPERLHQQCEQIFCMNCL--KATVPSLPN--ERPAKVCRLQHELLN 525 (542)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhHH--Hhhcccccc--cchHHHHHHHHHHhh
No 271
>PRK14148 heat shock protein GrpE; Provisional
Probab=37.04 E-value=2.1e+02 Score=30.62 Aligned_cols=57 Identities=11% Similarity=0.216 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 001721 794 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTA 851 (1020)
Q Consensus 794 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~eE~~k~~aake~iksl~~ 851 (1020)
.+++..|++++..|+.+.-..-+|++-++|+.+.-...+.+-+ ..+.+++++-.+.+
T Consensus 46 ~~~l~~l~~e~~elkd~~lR~~Ae~eN~rKR~~rE~e~~~~~a-~~~~~~~LLpV~Dn 102 (195)
T PRK14148 46 KDTIKELEDSCDQFKDEALRAKAEMENIRKRAERDVSNARKFG-IEKFAKELLPVIDS 102 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhHHhH
Confidence 4556666666666666666666666666666655444433332 23445555444443
No 272
>PF06364 DUF1068: Protein of unknown function (DUF1068); InterPro: IPR010471 This family consists of several hypothetical plant proteins from Arabidopsis thaliana and Oryza sativa. The function of this family is unknown.
Probab=37.03 E-value=1.2e+02 Score=31.29 Aligned_cols=51 Identities=31% Similarity=0.346 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhHHHHHHHHH---HHHhhhhhHHHHH
Q 001721 794 SEEVIKLRAQVEELTRKSQLQE----IELERTTRQLKEALAVAG---EETAKCRAAKDVI 846 (1020)
Q Consensus 794 ~qev~~l~~qv~~L~~~~~~~~----~ei~~~~~~~~ea~~~a~---eE~~k~~aake~i 846 (1020)
++||.|--.+ -|++.+.+|+ ...++....+-||-.+|. .||.||.++.|--
T Consensus 79 ~eEmeK~~~~--LL~EELkLqe~~A~e~~~~~~~~lleAkk~asqYQkEAeKCnsgmeTC 136 (176)
T PF06364_consen 79 SEEMEKNFVD--LLSEELKLQEAVANENQRRADMALLEAKKMASQYQKEAEKCNSGMETC 136 (176)
T ss_pred hHHHHhhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHH
Confidence 5666655443 2334444444 444455555556666665 7899998877653
No 273
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=37.02 E-value=1.7e+02 Score=37.19 Aligned_cols=65 Identities=20% Similarity=0.318 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhh
Q 001721 795 EEVIKLRAQVEELTRKSQLQEI-------ELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTAQLKDMAEM 859 (1020)
Q Consensus 795 qev~~l~~qv~~L~~~~~~~~~-------ei~~~~~~~~ea~~~a~eE~~k~~aake~iksl~~qlk~~~e~ 859 (1020)
+|..++++++..|+++...++. +|..+++.++-+..+|.|=.++..+|.+-+-++..+|--|=..
T Consensus 391 ~ek~~~~~e~q~L~ekl~~lek~~re~qeri~~LE~ELr~l~~~A~E~q~~LnsAQDELvtfSEeLAqLYHH 462 (717)
T PF09730_consen 391 QEKDRLESEVQNLKEKLMSLEKSSREDQERISELEKELRALSKLAGESQGSLNSAQDELVTFSEELAQLYHH 462 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444455444444444 8888889999999999999999999999999999887755433
No 274
>PRK04325 hypothetical protein; Provisional
Probab=36.93 E-value=1.5e+02 Score=26.54 Aligned_cols=49 Identities=16% Similarity=0.232 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhCCC
Q 001721 800 LRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTAQLKDMAEMLPV 862 (1020)
Q Consensus 800 l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~eE~~k~~aake~iksl~~qlk~~~e~lp~ 862 (1020)
+...+..|+.+.-.||.-|+.+.+-|-+ --..|..|+.||+-|.+||-.
T Consensus 7 ~e~Ri~~LE~klAfQE~tIe~LN~vv~~--------------Qq~~I~~L~~ql~~L~~rl~~ 55 (74)
T PRK04325 7 MEDRITELEIQLAFQEDLIDGLNATVAR--------------QQQTLDLLQAQLRLLYQQMRD 55 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHH
Confidence 4445677777777777777666655544 334568888899998888844
No 275
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=36.77 E-value=2.5e+02 Score=29.07 Aligned_cols=42 Identities=12% Similarity=0.064 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhh
Q 001721 794 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAK 838 (1020)
Q Consensus 794 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~eE~~k 838 (1020)
.++..+++.|++.+..+ .+.+|+..+++.++-+.-|.+|+.+
T Consensus 59 l~~A~~~~~ea~~~~~~---~~~~L~~a~~ea~~ii~~a~~~a~~ 100 (174)
T PRK07352 59 LKEAEERLRQAAQALAE---AQQKLAQAQQEAERIRADAKARAEA 100 (174)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555544444 3444555555555555555555544
No 276
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=36.68 E-value=26 Score=39.91 Aligned_cols=55 Identities=25% Similarity=0.514 Sum_probs=29.0
Q ss_pred cCCccCCCCCcCccccccccccccCCceEeecCCCCcccccccCCC-CCCCee--eCccchhhhhcc
Q 001721 584 VDQSMCSGCRIPFNFKRKRHNCYNCGLVYCHTCSSKKSVKASMAPN-PNKPYR--VCDNCFGKLTKA 647 (1020)
Q Consensus 584 ~d~s~Cs~C~~~Fs~~~krhhC~~CG~v~C~~CSs~~~~~~~~~~~-~~k~~R--VC~~C~~~l~~~ 647 (1020)
.-.-.|+.|...+.+ .|..|.+||. +.+.....+..+ ....+| +|+.|..-++..
T Consensus 208 ~RyL~CslC~teW~~--~R~~C~~Cg~-------~~~l~y~~~e~~~~~~~~r~e~C~~C~~YlK~~ 265 (305)
T TIGR01562 208 LRYLSCSLCATEWHY--VRVKCSHCEE-------SKHLAYLSLEHDAEKAVLKAETCDSCQGYLKIL 265 (305)
T ss_pred ceEEEcCCCCCcccc--cCccCCCCCC-------CCceeeEeecCCCCCcceEEeeccccccchhhh
Confidence 334457777654443 3666777764 122222222211 123455 999997776654
No 277
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=36.56 E-value=1.9e+02 Score=33.82 Aligned_cols=47 Identities=21% Similarity=0.248 Sum_probs=30.8
Q ss_pred HHHHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhCCC
Q 001721 816 IELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTAQLKDMAEMLPV 862 (1020)
Q Consensus 816 ~ei~~~~~~~~ea~~~a~eE~~k~~aake~iksl~~qlk~~~e~lp~ 862 (1020)
.+++.+-++..++-.--.+--.|.+.|-+-|..+|.+|.++.|+|=.
T Consensus 266 ~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~ 312 (359)
T PF10498_consen 266 NQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQ 312 (359)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 34444444444555555555667778888888888888888877644
No 278
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=36.56 E-value=1.1e+02 Score=36.43 Aligned_cols=20 Identities=25% Similarity=0.317 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHHhH
Q 001721 806 ELTRKSQLQEIELERTTRQL 825 (1020)
Q Consensus 806 ~L~~~~~~~~~ei~~~~~~~ 825 (1020)
.|..++..++.+|..++.++
T Consensus 63 kL~~~lk~~e~~i~~~~~ql 82 (420)
T COG4942 63 KLEKQLKSLETEIASLEAQL 82 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 279
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=36.56 E-value=1.6e+02 Score=31.22 Aligned_cols=58 Identities=24% Similarity=0.297 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHH---HHHHHhhhCCCc
Q 001721 803 QVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTA---QLKDMAEMLPVG 863 (1020)
Q Consensus 803 qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~eE~~k~~aake~iksl~~---qlk~~~e~lp~~ 863 (1020)
+...|+.+.++.+.++.....+++||-.+|-+=-.| ..||++.|+- +|..-.||.-.+
T Consensus 47 ~~Kv~enr~~kdEE~~e~~e~qLkEAk~iaE~adrK---~eEVarkL~iiE~dLE~~eeraE~~ 107 (205)
T KOG1003|consen 47 GMKVIENRAQKLEEKMEAQEAQLKEAKHIAEKADRK---YEEVARKLVIIEGELERAEERAEAA 107 (205)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 456777788888888888889999988887555556 5788888876 666555554443
No 280
>smart00338 BRLZ basic region leucin zipper.
Probab=36.46 E-value=61 Score=27.86 Aligned_cols=28 Identities=29% Similarity=0.338 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001721 796 EVIKLRAQVEELTRKSQLQEIELERTTR 823 (1020)
Q Consensus 796 ev~~l~~qv~~L~~~~~~~~~ei~~~~~ 823 (1020)
+|..|..+...|..+.+.+..|++.++.
T Consensus 34 ~~~~L~~en~~L~~~~~~l~~e~~~lk~ 61 (65)
T smart00338 34 KVEQLEAENERLKKEIERLRRELEKLKS 61 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444443
No 281
>COG3599 DivIVA Cell division initiation protein [Cell division and chromosome partitioning]
Probab=36.45 E-value=1.5e+02 Score=31.98 Aligned_cols=75 Identities=20% Similarity=0.194 Sum_probs=35.7
Q ss_pred CCcchhhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-HHHHHHHHHh-----hhhhHHHHHHHHHHHHH
Q 001721 782 SPKIVVDDAKRT-SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKE-ALAVAGEETA-----KCRAAKDVIKSLTAQLK 854 (1020)
Q Consensus 782 ~~~~~~~~l~~~-~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~e-a~~~a~eE~~-----k~~aake~iksl~~qlk 854 (1020)
+.+..+|++-.- ..+...+..+++.|+++.+.++.+|+........ ++..|..++. ..+.++++||-+.++=+
T Consensus 23 y~~eEVdeFLD~V~~dye~~l~e~~~l~~~i~~L~~~l~~~~~~~~s~~i~~a~~~a~~~~~~a~~ea~~il~~a~~~a~ 102 (212)
T COG3599 23 YDEEEVDEFLDDVIDDYEQLLDENEDLEDEIDELKEELKEAADAEDSQAIQQAETEAEELKQAAEAEADDILKRASAQAQ 102 (212)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444333 3444444445555555555555555544333221 2223322211 23456778888887655
Q ss_pred HH
Q 001721 855 DM 856 (1020)
Q Consensus 855 ~~ 856 (1020)
.|
T Consensus 103 ~v 104 (212)
T COG3599 103 RV 104 (212)
T ss_pred HH
Confidence 55
No 282
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=36.39 E-value=1.9e+02 Score=34.13 Aligned_cols=66 Identities=20% Similarity=0.208 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH--------------hhhhhHHHHHHHHHHHHHHHhhh
Q 001721 794 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEET--------------AKCRAAKDVIKSLTAQLKDMAEM 859 (1020)
Q Consensus 794 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~eE~--------------~k~~aake~iksl~~qlk~~~e~ 859 (1020)
-.|+..||+.+..|+-+|+.|+.+.|++..+++-+-..-.+|- ...+|..|+|.-|-.+|.-+-.+
T Consensus 310 eeentelRs~~arlksl~dklaee~qr~sd~LE~lrlql~~eq~l~~rm~d~Lrrfq~ekeatqELieelrkelehlr~~ 389 (502)
T KOG0982|consen 310 EEENTELRSLIARLKSLADKLAEEDQRSSDLLEALRLQLICEQKLRVRMNDILRRFQEEKEATQELIEELRKELEHLRRR 389 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 5678888889999999999999999998888886665555443 23467788888888777655433
No 283
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=36.32 E-value=77 Score=28.49 Aligned_cols=27 Identities=33% Similarity=0.437 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001721 795 EEVIKLRAQVEELTRKSQLQEIELERT 821 (1020)
Q Consensus 795 qev~~l~~qv~~L~~~~~~~~~ei~~~ 821 (1020)
+|.+.|+.++.+|++..+.....|..+
T Consensus 43 keNieLKve~~~L~~el~~~~~~l~~a 69 (75)
T PF07989_consen 43 KENIELKVEVESLKRELQEKKKLLKEA 69 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444443333333
No 284
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=36.18 E-value=1.2e+02 Score=34.98 Aligned_cols=71 Identities=13% Similarity=0.192 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH---HHHHHHHHHhhhhh-----HHHHHHHHHHHHHHHhhhCCCcc
Q 001721 794 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKE---ALAVAGEETAKCRA-----AKDVIKSLTAQLKDMAEMLPVGA 864 (1020)
Q Consensus 794 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~e---a~~~a~eE~~k~~a-----ake~iksl~~qlk~~~e~lp~~~ 864 (1020)
.+|-++|++.....++|+|+...-...+.+.+.- -+.-..+...+|+. .++.|+.|..++|+....+-...
T Consensus 10 ~~efq~Lqethr~Y~qKleel~~lQ~~C~ssI~~QkkrLk~L~~sLk~~~~~~~~e~~~~i~~L~~~Ik~r~~~l~DmE 88 (330)
T PF07851_consen 10 QKEFQELQETHRSYKQKLEELSKLQDKCSSSISHQKKRLKELKKSLKRCKKSLSAEERELIEKLEEDIKERRCQLFDME 88 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHhhHHHHH
Confidence 3455555555555555555544333333222211 11222333444432 45666666666666655555443
No 285
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=36.12 E-value=1.1e+02 Score=34.15 Aligned_cols=24 Identities=21% Similarity=0.065 Sum_probs=13.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHhhhC
Q 001721 837 AKCRAAKDVIKSLTAQLKDMAEML 860 (1020)
Q Consensus 837 ~k~~aake~iksl~~qlk~~~e~l 860 (1020)
-|+++.||-.-.--+=|.|++||+
T Consensus 191 ~kR~~lKEa~~~~f~Al~E~aEK~ 214 (271)
T PF13805_consen 191 IKRQKLKEAYSLKFDALIERAEKQ 214 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 466666665554444555666663
No 286
>PF09074 Mer2: Mer2; InterPro: IPR015159 Meiotic recombination 2 protein (Mer2) also known as Rec107, forms part of a complex that is required for meiotic double strand DNA break formation. Mer2 increases in abundance and is phosphorylated during the prophase phase of cell division []. MER2 is not required for mitosis and mitotic DNA repair mechanisms and is a component of the MER2-MEI4-REC114 complex which seems to be required for meiotic double-strand break (DSB) formation []. ; GO: 0007131 reciprocal meiotic recombination, 0000794 condensed nuclear chromosome
Probab=36.09 E-value=3.7e+02 Score=28.56 Aligned_cols=20 Identities=35% Similarity=0.438 Sum_probs=15.4
Q ss_pred HHhhhhhHHHHHHHHHHHHH
Q 001721 835 ETAKCRAAKDVIKSLTAQLK 854 (1020)
Q Consensus 835 E~~k~~aake~iksl~~qlk 854 (1020)
|+++-+-.|+.||.|.+||+
T Consensus 75 ~~s~~~~ik~~i~~l~~~i~ 94 (190)
T PF09074_consen 75 EKSSNEDIKKLIKSLGNQIN 94 (190)
T ss_pred HHHHHhhHHHHHHHHHHHHH
Confidence 36777888899999888554
No 287
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=35.96 E-value=1.3e+02 Score=33.13 Aligned_cols=48 Identities=10% Similarity=0.090 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhh
Q 001721 794 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRA 841 (1020)
Q Consensus 794 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~eE~~k~~a 841 (1020)
-+++.+++.....++.+.++...||.+++.++++|-....+|-++-+.
T Consensus 162 Q~~le~k~e~l~k~~~dr~~~~~ev~~~e~kve~a~~~~k~e~~Rf~~ 209 (243)
T cd07666 162 QAELDSKVEALANKKADRDLLKEEIEKLEDKVECANNALKADWERWKQ 209 (243)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555666666888999999999999998887777776544
No 288
>PF10828 DUF2570: Protein of unknown function (DUF2570); InterPro: IPR022538 This entry is represented by Bacteriophage IME08, pseT.3. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of proteins with unknown function.
Probab=35.84 E-value=3.7e+02 Score=25.80 Aligned_cols=43 Identities=23% Similarity=0.232 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 001721 794 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEET 836 (1020)
Q Consensus 794 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~eE~ 836 (1020)
.+.+.+|+++.+.+++..++++..+++++.++++.-.+..+..
T Consensus 24 s~~i~~L~a~n~~q~~tI~qq~~~~~~L~~~~~~~r~~~~~~~ 66 (110)
T PF10828_consen 24 SQRIDRLRAENKAQAQTIQQQEDANQELKAQLQQNRQAVEEQQ 66 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678889999999999999999999999888887655544433
No 289
>PF06273 eIF-4B: Plant specific eukaryotic initiation factor 4B; InterPro: IPR010433 This family consists of several plant specific eukaryotic initiation factor 4B proteins.
Probab=35.59 E-value=1.1e+02 Score=36.69 Aligned_cols=24 Identities=13% Similarity=0.339 Sum_probs=14.4
Q ss_pred hhHHHHHHHHHHHHHH----HhhhCCCc
Q 001721 840 RAAKDVIKSLTAQLKD----MAEMLPVG 863 (1020)
Q Consensus 840 ~aake~iksl~~qlk~----~~e~lp~~ 863 (1020)
+.+.|.|+....||.- |-.|+.-+
T Consensus 399 ~~~~e~i~~kE~eLe~L~~elDdkvRFg 426 (492)
T PF06273_consen 399 ESLREEISQKEKELEKLTRELDDKVRFG 426 (492)
T ss_pred hhHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 5667777777776654 44444444
No 290
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=35.54 E-value=3.6e+02 Score=28.89 Aligned_cols=68 Identities=21% Similarity=0.250 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH--------hhhhhHHHHHHHHHHHHHHHhhhCC
Q 001721 794 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEET--------AKCRAAKDVIKSLTAQLKDMAEMLP 861 (1020)
Q Consensus 794 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~eE~--------~k~~aake~iksl~~qlk~~~e~lp 861 (1020)
-+|+..|+-+.+.|.++++.++.|-..+.++.+.++.=+-..+ .|.++..+.+..-.+||.++-...-
T Consensus 99 ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQk~~~kn~lLEkKl~~l~~~lE~keaqL~evl~~~n 174 (201)
T PF13851_consen 99 EKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQKTGLKNLLLEKKLQALSEQLEKKEAQLNEVLAAAN 174 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 6777788888899999999999999999988888877666655 4667777777777788888765533
No 291
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=35.52 E-value=1.2e+02 Score=30.93 Aligned_cols=46 Identities=17% Similarity=0.283 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 001721 794 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLT 850 (1020)
Q Consensus 794 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~eE~~k~~aake~iksl~ 850 (1020)
.+|+.+|.+|+.-|.++.+.+..+|..+..-+-| +..+++-|+.|.
T Consensus 5 ~~~le~l~a~lq~l~~qie~L~~~i~~l~~~~~e-----------~~~~~~tl~~lk 50 (145)
T COG1730 5 QQELEELAAQLQILQSQIESLQAQIAALNAAISE-----------LQTAIETLENLK 50 (145)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHH
Confidence 4677777777777777777777777766555544 555667666654
No 292
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=35.48 E-value=1.2e+02 Score=32.83 Aligned_cols=30 Identities=20% Similarity=0.347 Sum_probs=25.9
Q ss_pred CCcEEEEEecCcEEEEEeCCCeEEEEeCCC
Q 001721 507 KNFVEEIACGDYHVAVLTSRTEVYTWGKGA 536 (1020)
Q Consensus 507 ~~~I~~Ia~G~~HslaLTsdG~VytWG~n~ 536 (1020)
+..+..+.|-..+.++||.+|.+|+|=-..
T Consensus 12 gs~~~~l~~~~~~Ll~iT~~G~l~vWnl~~ 41 (219)
T PF07569_consen 12 GSPVSFLECNGSYLLAITSSGLLYVWNLKK 41 (219)
T ss_pred CCceEEEEeCCCEEEEEeCCCeEEEEECCC
Confidence 467888999999999999999999996543
No 293
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=35.40 E-value=1.2e+03 Score=30.95 Aligned_cols=203 Identities=12% Similarity=0.063 Sum_probs=0.0
Q ss_pred CCcEEEEEecCCE--EEEEEeCCcEEEeCCCCCCCcccCCCCCcceecce---eeCCCCCCCcEEEEEecCCeEEEEEcC
Q 001721 284 NINVELVACGEHH--TCAVTLSGDMYTWGGSNCNFGLLGHGNEMSLWLPK---KLNGPLEGIHVSSVSCGPWHTAVVTSA 358 (1020)
Q Consensus 284 ~~~I~~VacG~~h--t~aLT~dG~VysWG~n~~~~GqLG~g~~~~~~~P~---~I~~~l~~~~Iv~VacG~~Hs~aLt~~ 358 (1020)
...|.+|+.+..+ .++|+.+|.|+.|-..................... ..........+.+++.-..+.+++..+
T Consensus 426 ~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 505 (928)
T PF04762_consen 426 PSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLVLSD 505 (928)
T ss_pred CCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCCEEEEEEe
Q ss_pred CcEEEeccCCCCcCCCCCCcccccceeeccCCCCeEEEEecCCceEEEEEEeeecCcccccCCCCcEEEecCCCCCCcCC
Q 001721 359 GQLFTFGDGTFGVLGHGDRISVSTPREVDSLKGLRTVRAACGVWHTAAVVEVMVGSSSSSNCSSGKLFTWGDGDRGRLGH 438 (1020)
Q Consensus 359 G~Vy~wG~N~~GQLG~g~~~~~~~P~~V~~l~~~~I~~IacG~~ht~aLtE~~~~~~~~~~~~~G~Ly~WG~n~~GQLG~ 438 (1020)
.. -..+..-.+...+.........+....+.-.....+...+.+++-- .+|++| .+..
T Consensus 506 ~~---~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~-----------~~G~v~--------~~~~ 563 (928)
T PF04762_consen 506 SD---SNQSKIVLVDIDDSENSASVESSTEVDGVVLIISSSPDSGSLYIQT-----------NDGKVF--------QLSS 563 (928)
T ss_pred cC---cccceEEEEEeccCCCceeEEEEeccCceEEEEeeCCCCcEEEEEE-----------CCCEEE--------Eeec
Q ss_pred CCCCcceecEEeeccCCCCeeEEEeeCc---EEEEEecCCcEEEEeCCCCCCCCCCCCCCCcceeeccccCCCcEEEEEe
Q 001721 439 GDKEARLVPTCVAALVEPNFCQVSCGHS---LTVALTTTGHVYTMGSPVYGQLGDPKANGKLPTRVEGKLTKNFVEEIAC 515 (1020)
Q Consensus 439 g~~~~~~~Pt~V~~l~~~~I~~Ia~G~~---htlaLT~dG~Vy~wG~N~~GQLG~~~~~~~~P~~v~~~l~~~~I~~Ia~ 515 (1020)
....... .+.+.+...--+...-+.. +.+.|+.+|++|+=+ .+....+.++..
T Consensus 564 ~~~~~~~--~~fp~~c~~~~~~~~~~~~~~~~~~GLs~~~~Ly~n~----------------------~~la~~~tSF~v 619 (928)
T PF04762_consen 564 DGELSQI--VKFPQPCPWMEVCQINGSEDKRVLFGLSSNGRLYANS----------------------RLLASNCTSFAV 619 (928)
T ss_pred CCCcccc--ccCCCCCcEEEEEEECCccceeEEEEECCCCEEEECC----------------------EEEecCCceEEE
Q ss_pred cCcEEEEEeCCCeEEEE
Q 001721 516 GDYHVAVLTSRTEVYTW 532 (1020)
Q Consensus 516 G~~HslaLTsdG~VytW 532 (1020)
...|-++-|..-.+...
T Consensus 620 ~~~~Ll~TT~~h~l~fv 636 (928)
T PF04762_consen 620 TDSFLLFTTTQHTLKFV 636 (928)
T ss_pred EcCEEEEEecCceEEEE
No 294
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=35.23 E-value=2.7e+02 Score=25.34 Aligned_cols=65 Identities=15% Similarity=0.256 Sum_probs=31.7
Q ss_pred HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH---hhhhhHHHHHHHHHHHHHHHhh
Q 001721 794 SEEVIKLRAQV-------EELTRKSQLQEIELERTTRQLKEALAVAGEET---AKCRAAKDVIKSLTAQLKDMAE 858 (1020)
Q Consensus 794 ~qev~~l~~qv-------~~L~~~~~~~~~ei~~~~~~~~ea~~~a~eE~---~k~~aake~iksl~~qlk~~~e 858 (1020)
++++.+|+.++ ..++++.+.+-.+|.+.-++++..+.-..++. +......-+++-+.+|+..|+.
T Consensus 23 ~~~l~~l~~~~l~~~~~d~~~~~el~~l~~~i~~~~~~~~~~lk~l~~~~~~~~~~~~~~~~~ri~~nq~~~L~~ 97 (103)
T PF00804_consen 23 LNELRKLHKKILSSPDQDSELKRELDELTDEIKQLFQKIKKRLKQLSKDNEDSEGEEPSSNEVRIRKNQVQALSK 97 (103)
T ss_dssp HHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT--SHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCcHHHHHHHHHHHHHHH
Confidence 55555555522 35666666666666666555555544444442 2233333344444444444443
No 295
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=35.22 E-value=1.4e+02 Score=37.72 Aligned_cols=62 Identities=18% Similarity=0.288 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhCCCc
Q 001721 795 EEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTAQLKDMAEMLPVG 863 (1020)
Q Consensus 795 qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~eE~~k~~aake~iksl~~qlk~~~e~lp~~ 863 (1020)
+..+.+++|+..|..+|..+|.|+|++ ++|++-|- .-| |.+|--|..++++|.++..-|...
T Consensus 99 ddlk~~~sQiriLQn~c~~lE~ekq~l----Q~ti~~~q--~d~-ke~etelE~~~srlh~le~eLsAk 160 (1265)
T KOG0976|consen 99 DDLKHHESQIRILQNKCLRLEMEKQKL----QDTIQGAQ--DDK-KENEIEIENLNSRLHKLEDELSAK 160 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH--HHH-HHHHHHHHhhHHHHHHHHHHHhhh
Confidence 445667789999999999988887765 44443333 232 446666777777777776666554
No 296
>COG4396 Mu-like prophage host-nuclease inhibitor protein Gam [General function prediction only]
Probab=35.15 E-value=1.8e+02 Score=29.04 Aligned_cols=58 Identities=26% Similarity=0.325 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHh
Q 001721 794 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTAQLKDMA 857 (1020)
Q Consensus 794 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~eE~~k~~aake~iksl~~qlk~~~ 857 (1020)
.+||...-.|+..|.+..-.++.|...-+. ++-.+=+.+.++.|+-|++|+....+--
T Consensus 17 ~eeV~~~Ir~iGDlqRE~~RLeTemnDk~a------ai~e~Yapq~~~lk~EI~~L~k~vq~yC 74 (170)
T COG4396 17 KEEVTAFIRQIGDLQREVKRLETEMNDKKA------AIEEEYAPQAAPLKAEIMSLTKRVQAYC 74 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcchHh------HHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence 666666666777776666666665554333 3334678899999999999998766554
No 297
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=35.00 E-value=3.3e+02 Score=29.02 Aligned_cols=70 Identities=29% Similarity=0.325 Sum_probs=0.0
Q ss_pred hhhhhhh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH---HHHHHH---HHHHhhhhhHHHHHHHHHHHHHHH
Q 001721 787 VDDAKRT----SEEVIKLRAQVEELTRKSQLQEIELERTTRQLK---EALAVA---GEETAKCRAAKDVIKSLTAQLKDM 856 (1020)
Q Consensus 787 ~~~l~~~----~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~---ea~~~a---~eE~~k~~aake~iksl~~qlk~~ 856 (1020)
+++|.-. -.|+.+|+..|+....-...+-.||..++++++ -|...| .||-+. .|..+|+|-.+-+-+
T Consensus 10 v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal~~aK~l~eEled---Lk~~~~~lEE~~~~L 86 (193)
T PF14662_consen 10 VEDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQALQKAKALEEELED---LKTLAKSLEEENRSL 86 (193)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Q ss_pred hhh
Q 001721 857 AEM 859 (1020)
Q Consensus 857 ~e~ 859 (1020)
...
T Consensus 87 ~aq 89 (193)
T PF14662_consen 87 LAQ 89 (193)
T ss_pred HHH
No 298
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=34.88 E-value=3e+02 Score=28.54 Aligned_cols=42 Identities=14% Similarity=0.188 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhh
Q 001721 794 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAK 838 (1020)
Q Consensus 794 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~eE~~k 838 (1020)
.++..+++.|...+..+ .+.+|+..+++.++-+.-|.+|+.+
T Consensus 58 l~~Ae~~~~eA~~~~~e---~e~~L~~a~~ea~~ii~~A~~~a~~ 99 (175)
T PRK14472 58 IDRAHSAKDEAEAILRK---NRELLAKADAEADKIIREGKEYAEK 99 (175)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555554444433 4445555555555544444444443
No 299
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.80 E-value=3.1e+02 Score=32.71 Aligned_cols=48 Identities=23% Similarity=0.241 Sum_probs=26.0
Q ss_pred CCcchh-hhhhhhHHHHHHHHH-------HHHHHHHH---HHHHHHHHHHHHHhHHHHH
Q 001721 782 SPKIVV-DDAKRTSEEVIKLRA-------QVEELTRK---SQLQEIELERTTRQLKEAL 829 (1020)
Q Consensus 782 ~~~~~~-~~l~~~~qev~~l~~-------qv~~L~~~---~~~~~~ei~~~~~~~~ea~ 829 (1020)
.++-++ +++.+-++|+..|.+ ....|+++ .+.+..|||++.|--++++
T Consensus 227 sse~ee~eel~eq~eeneel~ae~kqh~v~~~ales~~sq~~e~~selE~llklkerl~ 285 (521)
T KOG1937|consen 227 SSEEEEVEELTEQNEENEELQAEYKQHLVEYKALESKRSQFEEQNSELEKLLKLKERLI 285 (521)
T ss_pred cccchhHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhHHHHH
Confidence 333333 677777555555555 33455544 4556677775554444443
No 300
>PRK14159 heat shock protein GrpE; Provisional
Probab=34.67 E-value=1.9e+02 Score=30.32 Aligned_cols=57 Identities=25% Similarity=0.236 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 001721 794 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTA 851 (1020)
Q Consensus 794 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~eE~~k~~aake~iksl~~ 851 (1020)
-+|+..|+.++..|+.+...+.++++-++|+.+.-..-+.+.+. -+.+++++-.+.+
T Consensus 29 ~~~i~~l~~e~~elkd~~lR~~AdfeN~rkR~~rE~e~~~~~a~-~~~~~~LLpV~Dn 85 (176)
T PRK14159 29 DVEQNKLQKDYDELKDKYMRANAEFENIKKRMEKEKLSAMAYAN-ESFAKDLLDVLDA 85 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhHHhH
Confidence 56677888888888888888888888887777765444443332 2444444444443
No 301
>KOG4552 consensus Vitamin-D-receptor interacting protein complex component [Transcription]
Probab=34.64 E-value=2.2e+02 Score=30.38 Aligned_cols=44 Identities=20% Similarity=0.123 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 001721 794 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETA 837 (1020)
Q Consensus 794 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~eE~~ 837 (1020)
-|+|..|++.|+.--+..++++..|..+..-+--|..-|.+-.+
T Consensus 73 e~~m~~Lea~VEkrD~~IQqLqk~LK~aE~iLtta~fqA~qKLk 116 (272)
T KOG4552|consen 73 EQLMRTLEAHVEKRDEVIQQLQKNLKSAEVILTTACFQANQKLK 116 (272)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666666666666666666666665554333
No 302
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=34.62 E-value=86 Score=35.90 Aligned_cols=26 Identities=27% Similarity=0.307 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001721 794 SEEVIKLRAQVEELTRKSQLQEIELE 819 (1020)
Q Consensus 794 ~qev~~l~~qv~~L~~~~~~~~~ei~ 819 (1020)
.+|+...+.+++.++++.+.++..|+
T Consensus 217 ~~ei~~~~~~l~e~~~~l~~l~~~I~ 242 (312)
T smart00787 217 LQEIMIKVKKLEELEEELQELESKIE 242 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333
No 303
>cd01251 PH_centaurin_alpha Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha is a phophatidlyinositide binding protein consisting of an N-terminal ArfGAP domain and two PH domains. In response to growth factor activation, PI3K phosphorylates phosphatidylinositol 4,5-bisphosphate to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 1 is recruited to the plasma membrane following growth factor stimulation by specific binding of its PH domain to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 2 is constitutively bound to the plasma membrane since it binds phosphatidylinositol 4,5-bisphosphate and phosphatidylinositol 3,4,5-trisphosphate with equal affinity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specifici
Probab=34.59 E-value=27 Score=32.97 Aligned_cols=35 Identities=17% Similarity=0.550 Sum_probs=32.7
Q ss_pred ceEEEEecCcccceeecCcccchhhhhhhHhhhcC
Q 001721 18 QSFSLIYNDRSLDLICKDKDEAEVWFTGLKALISR 52 (1020)
Q Consensus 18 ~sfsl~~~~~~ld~ickd~~~~~~w~~~l~~~~~~ 52 (1020)
..|.++-.+|..=|.|-+..|.+-|+..|+..|.+
T Consensus 68 ~~F~i~t~~Rty~l~a~s~~e~~~Wi~ai~~v~~~ 102 (103)
T cd01251 68 YGVTLVTPERKFLFACETEQDRREWIAAFQNVLSR 102 (103)
T ss_pred ceEEEEeCCeEEEEECCCHHHHHHHHHHHHHHhcC
Confidence 39999999999999999999999999999999875
No 304
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=34.53 E-value=54 Score=34.71 Aligned_cols=33 Identities=24% Similarity=0.370 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 001721 794 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLK 826 (1020)
Q Consensus 794 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ 826 (1020)
+.++.+|+.+..........+..++..++.+++
T Consensus 101 ~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~ 133 (194)
T PF08614_consen 101 NDELQELEKELSEKERRLAELEAELAQLEEKIK 133 (194)
T ss_dssp -------------HHHHHHHHHHHHHHHHHHHH
T ss_pred ccccchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444443333
No 305
>PRK14144 heat shock protein GrpE; Provisional
Probab=34.44 E-value=2.4e+02 Score=30.25 Aligned_cols=57 Identities=18% Similarity=0.183 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 001721 794 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTA 851 (1020)
Q Consensus 794 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~eE~~k~~aake~iksl~~ 851 (1020)
.+++..|++|+..|+.++-...+|.+.++|.++.-...|.+.+.. +.++++|-.+.+
T Consensus 51 ~~~i~~le~e~~elkdk~lR~~AefeN~RKR~~kE~e~~~~~a~~-~~~~~LLpV~Dn 107 (199)
T PRK14144 51 EEQLTLAEQKAHENWEKSVRALAELENVRRRMEREVANAHKYGVE-KLISALLPVVDS 107 (199)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhHHhH
Confidence 456778888888888888888888888888887766665555443 555555555544
No 306
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=34.41 E-value=58 Score=34.30 Aligned_cols=61 Identities=23% Similarity=0.364 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHh
Q 001721 794 SEEVIKLRAQVEELTRKSQLQEIELER----TTRQLKEALAVAGEETAKCRAAKDVIKSLTAQLKDMA 857 (1020)
Q Consensus 794 ~qev~~l~~qv~~L~~~~~~~~~ei~~----~~~~~~ea~~~a~eE~~k~~aake~iksl~~qlk~~~ 857 (1020)
+.|+.+++++++.++.+.+......++ -.++.++-+.--.+|.+| ++.-++.|..|.+.+.
T Consensus 124 i~~l~~~~~~~~~~~kq~~~~~~~~~~~~~~~~~~~~~ei~~lk~el~~---~~~~~~~LkkQ~~~l~ 188 (192)
T PF05529_consen 124 IKELIKLEEKLEALKKQAESASEAAEKLLKEENKKLSEEIEKLKKELEK---KEKEIEALKKQSEGLQ 188 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 566666666666555554433222221 112222222223333333 4555556666666554
No 307
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=34.40 E-value=1.5e+02 Score=36.86 Aligned_cols=9 Identities=44% Similarity=0.586 Sum_probs=6.3
Q ss_pred eeeecceeE
Q 001721 950 VEQDETGVY 958 (1020)
Q Consensus 950 ~~~~e~gv~ 958 (1020)
+|++|||+|
T Consensus 546 lE~vePG~~ 554 (569)
T PRK04778 546 LEKVEPGVT 554 (569)
T ss_pred HHhhCCcHH
Confidence 677777765
No 308
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes. Dimerisation via the leucine zipper motif with other basic helix-loop-helix-leucine zipper (b/HLH/lz) proteins is required for efficient DNA binding []. The Myc-Max dimer is a transactivating complex activating expression of growth related genes promoting cell proliferation. The dimerisation is facilitated via interdigitating leucine residues every 7th position of the alpha helix. Like charge repulsion of adjacent residues in this region preturbs the formation of homodimers with heterodimers being promoted by opposing charge attractions. It has been demonstrated that in transgenic mice the balance between oncogene-induced proliferation and apoptosis in a given tissue can be a critical determinant in the initiation and maintenance of the tumor [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1NKP_D 1A93_A 2A93_A.
Probab=34.28 E-value=1e+02 Score=22.98 Aligned_cols=27 Identities=26% Similarity=0.340 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001721 796 EVIKLRAQVEELTRKSQLQEIELERTT 822 (1020)
Q Consensus 796 ev~~l~~qv~~L~~~~~~~~~ei~~~~ 822 (1020)
|=.+|-++.+-|+++.|++...|+.++
T Consensus 2 dEqkL~sekeqLrrr~eqLK~kLeqlr 28 (32)
T PF02344_consen 2 DEQKLISEKEQLRRRREQLKHKLEQLR 28 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345777888888888888888887764
No 309
>PF13935 Ead_Ea22: Ead/Ea22-like protein
Probab=34.26 E-value=2.5e+02 Score=28.21 Aligned_cols=59 Identities=14% Similarity=0.221 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhHHHHHHHH-HHHHhhhhhHHHHHHHHHHH
Q 001721 794 SEEVIKLRAQVEELTRK--SQLQEIELERTTRQLKEALAVA-GEETAKCRAAKDVIKSLTAQ 852 (1020)
Q Consensus 794 ~qev~~l~~qv~~L~~~--~~~~~~ei~~~~~~~~ea~~~a-~eE~~k~~aake~iksl~~q 852 (1020)
+.|+..++..+..|.+. ++.....++++..+|+.|-... .+...+..++..+|..+-.+
T Consensus 73 LDElE~~~~~i~~~~~~~e~~~~a~~~~~l~~~Le~ae~~~~~~~~~~~~~~e~~~~~~~~r 134 (139)
T PF13935_consen 73 LDELERAQQRIAELEQECENEDIALDVQKLRVELEAAEKRIAAELAEQAEAYEGEIADYAKR 134 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 45555555555555555 5555555666666666555444 44444555555555554443
No 310
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=34.12 E-value=1.1e+02 Score=31.65 Aligned_cols=34 Identities=29% Similarity=0.515 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHhHHH
Q 001721 794 SEEVIKLRAQVE------------ELTRKSQLQEIELERTTRQLKE 827 (1020)
Q Consensus 794 ~qev~~l~~qv~------------~L~~~~~~~~~ei~~~~~~~~e 827 (1020)
..|+.+|++|.. .|+||.+.++.||+++++++..
T Consensus 46 ~~Ei~~l~~E~~~iS~qDeFAkwaKl~Rk~~kl~~el~~~~~~~~~ 91 (161)
T PF04420_consen 46 RKEILQLKRELNAISAQDEFAKWAKLNRKLDKLEEELEKLNKSLSS 91 (161)
T ss_dssp HHHHHHHHHHHTTS-TTTSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777777653 6788888888888877666554
No 311
>PRK05560 DNA gyrase subunit A; Validated
Probab=33.90 E-value=1.2e+03 Score=30.44 Aligned_cols=119 Identities=14% Similarity=0.068 Sum_probs=63.5
Q ss_pred EEecCcEEEEEEcCCeEEEEeCCCCCcc---CCCCCCCCCcceEeeccCCCcEEEEEecC-----CEEEEEEeCCcEEEe
Q 001721 238 IACGGRHAALVTKQGEVFSWGEELGGRL---GHGVDSDVSHPKLIDALKNINVELVACGE-----HHTCAVTLSGDMYTW 309 (1020)
Q Consensus 238 Ia~G~~hs~~Lt~dG~Vy~wG~N~~GqL---G~g~~~~~~~P~~V~~l~~~~I~~VacG~-----~ht~aLT~dG~VysW 309 (1020)
.+....+.+++|+.|++|..-...--.. +.|. ..-..+....+.+|+.+.+-. ...+++|.+|.+.--
T Consensus 544 ~~~t~d~LllfTs~Grv~~l~v~~iP~~~~~~~G~----~i~~ll~L~~~E~Iv~~i~~~~~~~e~~lvlvTk~GyiKRi 619 (805)
T PRK05560 544 VASTHDTLLFFTNRGRVYRLKVYEIPEASRTARGR----PIVNLLPLEPGEKITAILPVREFDDDKYLFFATKNGTVKKT 619 (805)
T ss_pred EecCCCeEEEEecCCeEEEEEhhhCcCCCcCCCCe----EHHHhcCCCCCceEEEEEeccCCCCCCEEEEEeCCCEEEEE
Confidence 3445667889999999999864421111 1111 111123334566777776643 457888999977644
Q ss_pred CCCCCCCcccCCCCCcceecceeeCCCCCCCcEEEEEe--cCCeEEEEEcCCcEEEeccCCC
Q 001721 310 GGSNCNFGLLGHGNEMSLWLPKKLNGPLEGIHVSSVSC--GPWHTAVVTSAGQLFTFGDGTF 369 (1020)
Q Consensus 310 G~n~~~~GqLG~g~~~~~~~P~~I~~~l~~~~Iv~Vac--G~~Hs~aLt~~G~Vy~wG~N~~ 369 (1020)
-... +-....+ ......+-++..++.+.. ...+.+++|+.|++|.+-....
T Consensus 620 ~l~~--~~~~~r~-------G~~~ikLke~D~lv~v~~~~~~d~lll~T~~Gr~~r~~~~eI 672 (805)
T PRK05560 620 SLSE--FSNIRSN-------GIIAINLDEGDELIGVRLTDGDDDILLATKNGKAIRFPESDV 672 (805)
T ss_pred EhHH--hhhcccC-------CceeeccCCCCEEEEEEEeCCCCEEEEEECCCcEEEEEhhhc
Confidence 3221 1100000 000111112344554433 3457899999999999865443
No 312
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=33.80 E-value=3.2e+02 Score=27.67 Aligned_cols=61 Identities=21% Similarity=0.357 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH--------HHHHHHHHhhhh---hHHHHHHHHHHHHHHHhh
Q 001721 798 IKLRAQVEELTRKSQLQEIELERTTRQLKEA--------LAVAGEETAKCR---AAKDVIKSLTAQLKDMAE 858 (1020)
Q Consensus 798 ~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea--------~~~a~eE~~k~~---aake~iksl~~qlk~~~e 858 (1020)
.+|..++.+|+..-+.++.++|+.+.+|.|= -.|-.-|..|.+ .+|--+.-|..||+++.|
T Consensus 69 ~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~~~~l~~~E~ek~q~~e~~~~~ve~L~~ql~~L~E 140 (140)
T PF10473_consen 69 NQLELELDTLRSEKENLDKELQKKQEKVSELESLNSSLENLLQEKEQEKVQLKEESKSAVEMLQKQLKELNE 140 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 3344455555555555566666666665531 122233333322 233334455666666543
No 313
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=33.59 E-value=1.1e+03 Score=30.11 Aligned_cols=119 Identities=18% Similarity=0.189 Sum_probs=65.9
Q ss_pred EEEEEecCC--eEEEEEcCCcEEEeccCCCCcCCCCCCcccccceeeccCCCCeEEEEecCCceEEEEEEeeecCccccc
Q 001721 342 VSSVSCGPW--HTAVVTSAGQLFTFGDGTFGVLGHGDRISVSTPREVDSLKGLRTVRAACGVWHTAAVVEVMVGSSSSSN 419 (1020)
Q Consensus 342 Iv~VacG~~--Hs~aLt~~G~Vy~wG~N~~GQLG~g~~~~~~~P~~V~~l~~~~I~~IacG~~ht~aLtE~~~~~~~~~~ 419 (1020)
|..++.+.. .++++...|.-.++|...-|||+.-+.....+-.+-+.-. .++..++-...-.++.+ .
T Consensus 300 ih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~-~~i~~l~YSpDgq~iaT----------G 368 (893)
T KOG0291|consen 300 IHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHS-DRITSLAYSPDGQLIAT----------G 368 (893)
T ss_pred EEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccc-cceeeEEECCCCcEEEe----------c
Confidence 455555544 4566667788888888888888754333222221111100 13444444444444443 2
Q ss_pred CCCCcEEEecCCCCCCcCCCCCCcceecEEeecc----CCCCeeEEEeeCcEEEEEecCCcEEEEeCCCC
Q 001721 420 CSSGKLFTWGDGDRGRLGHGDKEARLVPTCVAAL----VEPNFCQVSCGHSLTVALTTTGHVYTMGSPVY 485 (1020)
Q Consensus 420 ~~~G~Ly~WG~n~~GQLG~g~~~~~~~Pt~V~~l----~~~~I~~Ia~G~~htlaLT~dG~Vy~wG~N~~ 485 (1020)
..||+|-.|-... | .|+-.+ .....+++..-.+..+-..-||.|-+|--..|
T Consensus 369 ~eDgKVKvWn~~S-g-------------fC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRY 424 (893)
T KOG0291|consen 369 AEDGKVKVWNTQS-G-------------FCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRY 424 (893)
T ss_pred cCCCcEEEEeccC-c-------------eEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeeccc
Confidence 3578888885422 1 111111 22345566666666777778999999986655
No 314
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=33.59 E-value=3.4e+02 Score=28.16 Aligned_cols=62 Identities=27% Similarity=0.438 Sum_probs=43.3
Q ss_pred HHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhHH---HHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 001721 794 SEEVIKLRA-------QVEELTRKSQLQEIELERTTRQLK---EALAVAGEETAKCRAAKDVIKSLTAQLKD 855 (1020)
Q Consensus 794 ~qev~~l~~-------qv~~L~~~~~~~~~ei~~~~~~~~---ea~~~a~eE~~k~~aake~iksl~~qlk~ 855 (1020)
++|+.+|+. .+...+++......+++..++++. +...-..+|..++|...+-++.....|+.
T Consensus 62 n~eL~~Lk~~~~~~v~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~ 133 (177)
T PF13870_consen 62 NKELLKLKKKIGKTVQILTHVKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKLRQ 133 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999988 345667777777788877777665 44556777888766666655555555554
No 315
>cd04779 HTH_MerR-like_sg4 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 4). Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=33.50 E-value=1.6e+02 Score=29.41 Aligned_cols=14 Identities=29% Similarity=0.195 Sum_probs=10.3
Q ss_pred HHHHHHhhhCCCcc
Q 001721 851 AQLKDMAEMLPVGA 864 (1020)
Q Consensus 851 ~qlk~~~e~lp~~~ 864 (1020)
+|-..|.++|||..
T Consensus 110 ~~~~~~~~~~~~~~ 123 (134)
T cd04779 110 AQRMKMTKELSQQV 123 (134)
T ss_pred HHHHHHHHhcCHHh
Confidence 46678888888864
No 316
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=33.43 E-value=3.9e+02 Score=27.60 Aligned_cols=43 Identities=16% Similarity=0.103 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhh
Q 001721 794 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKC 839 (1020)
Q Consensus 794 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~eE~~k~ 839 (1020)
.++..+.+.+++.+..+ .+.+|...+++.++-+.-|.+|+.+-
T Consensus 62 l~~Ae~~~~ea~~~~~e---~e~~L~~Ar~eA~~Ii~~A~~eAe~~ 104 (167)
T PRK08475 62 LEEIQEKLKESKEKKED---ALKKLEEAKEKAELIVETAKKEAYIL 104 (167)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555444 45566666666666666666666653
No 317
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=33.31 E-value=3.8e+02 Score=24.46 Aligned_cols=44 Identities=14% Similarity=0.176 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhh
Q 001721 795 EEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAK 838 (1020)
Q Consensus 795 qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~eE~~k 838 (1020)
+-+.+++..++.|+++.+..-.|+...-++..+-..-+.+..++
T Consensus 26 ~~l~~~~~ti~~l~~~~~~i~~e~~~ll~~~n~l~~dv~~k~~~ 69 (90)
T PF06103_consen 26 KTLDEVNKTIDTLQEQVDPITKEINDLLHNTNELLEDVNEKLEK 69 (90)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444455555555555555555555555555544444443333
No 318
>cd01233 Unc104 Unc-104 pleckstrin homology (PH) domain. Unc-104 pleckstrin homology (PH) domain. Unc-104 is a kinesin-like protein containing an N-terminal kinesin catalytic domain, followed by a forkhead associated domain with a C-terminal PH domain. These proteins are responsible for the transport of membrane vesicles along microtubules. The mechanism involves the binding of the PH domain to phosphatidiylinositol (4,5) P2-containing liposomes.
Probab=33.06 E-value=27 Score=32.69 Aligned_cols=34 Identities=18% Similarity=0.325 Sum_probs=31.2
Q ss_pred ceEEEEecCcccceeecCcccchhhhhhhHhhhc
Q 001721 18 QSFSLIYNDRSLDLICKDKDEAEVWFTGLKALIS 51 (1020)
Q Consensus 18 ~sfsl~~~~~~ld~ickd~~~~~~w~~~l~~~~~ 51 (1020)
-.|.++-++|++=|.|.+.+|.+-|+..|++++-
T Consensus 66 ~~F~I~t~~rt~~~~A~s~~e~~~Wi~ai~~~~~ 99 (100)
T cd01233 66 NTFAVCTKHRGYLFQALSDKEMIDWLYALNPLYA 99 (100)
T ss_pred cEEEEECCCCEEEEEcCCHHHHHHHHHHhhhhhc
Confidence 3799999999999999999999999999998763
No 319
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=32.99 E-value=3.5e+02 Score=27.20 Aligned_cols=41 Identities=17% Similarity=0.180 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 001721 794 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETA 837 (1020)
Q Consensus 794 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~eE~~ 837 (1020)
.+|..+++.+++.+..+ .+.+|...+++.++...-|.+|+.
T Consensus 44 l~~a~~~~~~a~~~~~e---~~~~l~~a~~ea~~i~~~a~~ea~ 84 (156)
T PRK05759 44 LAAAERAKKELELAQAK---YEAQLAEARAEAAEIIEQAKKRAA 84 (156)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555544444 333344444444444444444433
No 320
>PF07321 YscO: Type III secretion protein YscO; InterPro: IPR009929 This family contains the bacterial type III secretion protein YscO, which is approximately 150 residues long. YscO has been shown to be required for high-level expression and secretion of the anti-host proteins V antigen and Yops in Yersinia pestis [].
Probab=32.98 E-value=3.8e+02 Score=27.49 Aligned_cols=60 Identities=25% Similarity=0.300 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH---HHHHHHHHHhhhhhHHHHHHHHHHHH
Q 001721 794 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKE---ALAVAGEETAKCRAAKDVIKSLTAQL 853 (1020)
Q Consensus 794 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~e---a~~~a~eE~~k~~aake~iksl~~ql 853 (1020)
.+|+.+++.||..|..+-..++..+...++++++ ++.-|..+...|.-++|=|.-|..+.
T Consensus 66 ~kele~~~~qv~~Lr~~e~~le~~~~~a~~~~~~e~~~l~~a~~~~~~a~r~~eKf~eL~~~~ 128 (152)
T PF07321_consen 66 LKELEKWQQQVASLREREAELEQQLAEAEEQLEQERQALEEARKQLQQARRQQEKFAELAEQE 128 (152)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788888888888888888888888887777764 45556666666766777666666643
No 321
>cd01236 PH_outspread Outspread Pleckstrin homology (PH) domain. Outspread Pleckstrin homology (PH) domain. Outspread contains two PH domains and a C-terminal coiled-coil region. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=32.85 E-value=27 Score=33.38 Aligned_cols=31 Identities=19% Similarity=0.317 Sum_probs=28.9
Q ss_pred ceEEEEecCcccceeecCcccchhhhhhhHh
Q 001721 18 QSFSLIYNDRSLDLICKDKDEAEVWFTGLKA 48 (1020)
Q Consensus 18 ~sfsl~~~~~~ld~ickd~~~~~~w~~~l~~ 48 (1020)
.+|.++..+|..=|+|.+++|.|-|+..|.+
T Consensus 72 ~~f~I~tp~R~f~l~Aete~E~~~Wi~~l~~ 102 (104)
T cd01236 72 FSICILTPDKEHFIKAETKEEISWWLNMLMV 102 (104)
T ss_pred cEEEEECCCceEEEEeCCHHHHHHHHHHHHh
Confidence 4899999999999999999999999998865
No 322
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=32.59 E-value=2.8e+02 Score=26.68 Aligned_cols=39 Identities=18% Similarity=0.179 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 001721 798 IKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETA 837 (1020)
Q Consensus 798 ~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~eE~~ 837 (1020)
..|++|-.++.+++..++.+|-.+.+.++. .-+|..|..
T Consensus 47 ~~L~~q~~s~~qr~~eLqaki~ea~~~le~-eK~ak~~l~ 85 (107)
T PF09304_consen 47 QSLQAQNASRNQRIAELQAKIDEARRNLED-EKQAKLELE 85 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 344556666666666666666666666665 556664433
No 323
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=32.48 E-value=1.1e+02 Score=37.99 Aligned_cols=44 Identities=23% Similarity=0.320 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHH--hhhhhHHHHHHHHHHHHHHHh
Q 001721 810 KSQLQEIELERTTRQLKEALAVAGEET--AKCRAAKDVIKSLTAQLKDMA 857 (1020)
Q Consensus 810 ~~~~~~~ei~~~~~~~~ea~~~a~eE~--~k~~aake~iksl~~qlk~~~ 857 (1020)
..+.++.++++++++++++ +++. .+.++|+++-+.++.+|++|.
T Consensus 347 ~le~L~~el~~l~~~l~~~----a~~Ls~~R~~~a~~l~~~v~~~l~~L~ 392 (563)
T TIGR00634 347 SLEALEEEVDKLEEELDKA----AVALSLIRRKAAERLAKRVEQELKALA 392 (563)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3444444555554444443 2232 235788999999999999853
No 324
>PF12824 MRP-L20: Mitochondrial ribosomal protein subunit L20; InterPro: IPR024388 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents the essential mitochondrial ribosomal protein L20 family from fungi [].
Probab=32.41 E-value=1.1e+02 Score=31.66 Aligned_cols=53 Identities=23% Similarity=0.292 Sum_probs=32.5
Q ss_pred hhhhh-HHHHHHHHHH------HHHHHH------------------HHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhh
Q 001721 789 DAKRT-SEEVIKLRAQ------VEELTR------------------KSQLQEIELERTTRQLKEALAVAGEETAKCRA 841 (1020)
Q Consensus 789 ~l~~~-~qev~~l~~q------v~~L~~------------------~~~~~~~ei~~~~~~~~ea~~~a~eE~~k~~a 841 (1020)
.|+.. ++||.+||+| +..|.+ +.+.++.+++..+.+=..-=.+|+||=.|+|.
T Consensus 85 ~Lt~e~i~Eir~LR~~DP~~wTr~~LAkkF~~S~~fV~~v~~~~~e~~~~~~~~le~~k~rWg~~r~~ARedR~kRke 162 (164)
T PF12824_consen 85 HLTPEDIQEIRRLRAEDPEKWTRKKLAKKFNCSPLFVSMVAPAPKEKKKEMEARLEAIKSRWGPRRRIAREDRQKRKE 162 (164)
T ss_pred cCCHHHHHHHHHHHHcCchHhhHHHHHHHhCCCHHHHHHhcCCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 45555 9999999995 455544 34444455555444444444677777776653
No 325
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=32.39 E-value=3.3e+02 Score=28.45 Aligned_cols=43 Identities=14% Similarity=0.044 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhh
Q 001721 794 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKC 839 (1020)
Q Consensus 794 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~eE~~k~ 839 (1020)
.++..+.+.|+..+..+ .+.+|+.++++.++.+.-|.+|+.+.
T Consensus 64 l~~Ae~~~~eA~~~~~e---~e~~L~~A~~ea~~ii~~A~~~ae~~ 106 (184)
T CHL00019 64 IRNSEERREEAIEKLEK---ARARLRQAELEADEIRVNGYSEIERE 106 (184)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555544 44567777777777777777766654
No 326
>PRK14164 heat shock protein GrpE; Provisional
Probab=32.35 E-value=2e+02 Score=31.24 Aligned_cols=57 Identities=25% Similarity=0.201 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 001721 794 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTA 851 (1020)
Q Consensus 794 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~eE~~k~~aake~iksl~~ 851 (1020)
-.++..|+.|+..|+.+.....+|.+.++|+.+.-...+.+- ++.+.+|+++-.|.+
T Consensus 76 ~~~~~~le~el~el~d~llR~~AE~eN~RkR~~rE~e~~~~~-a~~~~~~~LLpVlDn 132 (218)
T PRK14164 76 DGEASTVEAQLAERTEDLQRVTAEYANYRRRTERERQAIIET-AKAGVATDLLPILDD 132 (218)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhHHhH
Confidence 356777777888888888888888888887776655444332 233455555544443
No 327
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=32.17 E-value=1.3e+02 Score=28.93 Aligned_cols=34 Identities=32% Similarity=0.404 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 001721 794 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKE 827 (1020)
Q Consensus 794 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~e 827 (1020)
.+||..|+.+|..|-++=..+..|.+.+++.+.+
T Consensus 21 ~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~ 54 (107)
T PF06156_consen 21 LEELEELKKQLQELLEENARLRIENEHLRERLEE 54 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444444444
No 328
>PRK14146 heat shock protein GrpE; Provisional
Probab=32.02 E-value=2.1e+02 Score=31.10 Aligned_cols=56 Identities=11% Similarity=0.191 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 001721 794 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLT 850 (1020)
Q Consensus 794 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~eE~~k~~aake~iksl~ 850 (1020)
.+|+.+|++++..|+.+.-.+.++++-++|+.+.-..-|...+. .+.++++|-.|.
T Consensus 60 ~~~l~~l~~e~~el~d~~lR~~AdfeN~rkR~~kE~e~~~~~a~-e~~~~~lLpv~D 115 (215)
T PRK14146 60 QKELDNAKKEIESLKDSWARERAEFQNFKRRSAQEFVSIRKEAV-KSLVSGFLNPID 115 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhHHh
Confidence 34566677777777777777777777777776665555444433 244444444443
No 329
>smart00706 TECPR Beta propeller repeats in Physarum polycephalum tectonins, Limulus lectin L-6 and animal hypothetical proteins.
Probab=31.73 E-value=69 Score=23.84 Aligned_cols=24 Identities=29% Similarity=0.415 Sum_probs=21.5
Q ss_pred cEEEEEecC-CeEEEEEcCCcEEEe
Q 001721 341 HVSSVSCGP-WHTAVVTSAGQLFTF 364 (1020)
Q Consensus 341 ~Iv~VacG~-~Hs~aLt~~G~Vy~w 364 (1020)
.+++|++|. ....+++.+|.||..
T Consensus 9 ~l~~isvg~~~~vW~V~~~g~i~~r 33 (35)
T smart00706 9 ELVQVSVGPSDTVWAVNSDGNIYRR 33 (35)
T ss_pred CEEEEEECCCCeEEEEcCCCCEEEE
Confidence 699999999 889999999999964
No 330
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=31.70 E-value=2.7e+02 Score=33.39 Aligned_cols=33 Identities=12% Similarity=0.278 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 001721 794 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLK 826 (1020)
Q Consensus 794 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ 826 (1020)
+.++.+|-.+..+|.++.|.+..+..+..|++.
T Consensus 28 ~~~~~~ld~~~r~~~~~~e~l~~~rn~~sk~ig 60 (429)
T COG0172 28 VDKLLELDEERRKLLRELEELQAERNELSKEIG 60 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555544444444444
No 331
>PRK14160 heat shock protein GrpE; Provisional
Probab=31.66 E-value=2.7e+02 Score=30.19 Aligned_cols=56 Identities=16% Similarity=0.136 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 001721 794 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLT 850 (1020)
Q Consensus 794 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~eE~~k~~aake~iksl~ 850 (1020)
.+++.+|+.++..|+.+.....++.+-++|+.+.-...+..-+ ..+.++++|-.|.
T Consensus 67 ~~~l~~l~~e~~elkd~~lR~~AefeN~RKR~~kE~e~~~~~a-~e~~~~~LLpVlD 122 (211)
T PRK14160 67 KEENKKLENELEALKDRLLRTVAEYDNYRKRTAKEKEGIYSDA-CEDVLKELLPVLD 122 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhHHh
Confidence 4555666666666666666666777766666665444443332 2344444444443
No 332
>PRK12472 hypothetical protein; Provisional
Probab=31.56 E-value=1.5e+02 Score=35.63 Aligned_cols=33 Identities=27% Similarity=0.449 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 001721 794 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLK 826 (1020)
Q Consensus 794 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ 826 (1020)
..|...|...+..|++....-+.||....|+|.
T Consensus 217 ~~~~~~~~~~l~~~e~~~~~a~~~l~~adk~l~ 249 (508)
T PRK12472 217 AREAAPLKASLRKLERAKARADAELKRADKALA 249 (508)
T ss_pred HHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777777788787777777777777766665
No 333
>PHA02790 Kelch-like protein; Provisional
Probab=31.29 E-value=2.7e+02 Score=33.73 Aligned_cols=16 Identities=19% Similarity=0.522 Sum_probs=11.9
Q ss_pred EEEEEeCCcEEEeCCC
Q 001721 297 TCAVTLSGDMYTWGGS 312 (1020)
Q Consensus 297 t~aLT~dG~VysWG~n 312 (1020)
..+..-+|+||+.|..
T Consensus 356 ~~~~~~~g~IYviGG~ 371 (480)
T PHA02790 356 PAVASINNVIYVIGGH 371 (480)
T ss_pred cEEEEECCEEEEecCc
Confidence 3445568999999865
No 334
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=31.26 E-value=3.5e+02 Score=28.26 Aligned_cols=41 Identities=24% Similarity=0.253 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 001721 794 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETA 837 (1020)
Q Consensus 794 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~eE~~ 837 (1020)
.+|..+++.|...+..+ .+.+|+..+++.++-+.-|.+|+.
T Consensus 67 l~~Ae~~~~eA~~~l~e---~e~~L~~A~~ea~~Ii~~A~~~a~ 107 (184)
T PRK13455 67 LEEARALREEAQTLLAS---YERKQREVQEQADRIVAAAKDEAQ 107 (184)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555554444 344455555555555555444444
No 335
>KOG3088 consensus Secretory carrier membrane protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.22 E-value=1.9e+02 Score=32.61 Aligned_cols=17 Identities=18% Similarity=0.378 Sum_probs=8.1
Q ss_pred hhhhhhhHHHHHHHHHH
Q 001721 787 VDDAKRTSEEVIKLRAQ 803 (1020)
Q Consensus 787 ~~~l~~~~qev~~l~~q 803 (1020)
.++++++.+|+.+-++|
T Consensus 59 a~~~~~kq~eL~~rqeE 75 (313)
T KOG3088|consen 59 AKDLAKKQAELLKKQEE 75 (313)
T ss_pred hhHHHHHHHHHHHHHHH
Confidence 45555444444444433
No 336
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=31.20 E-value=1.7e+02 Score=32.34 Aligned_cols=63 Identities=21% Similarity=0.335 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhCC
Q 001721 794 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTAQLKDMAEMLP 861 (1020)
Q Consensus 794 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~eE~~k~~aake~iksl~~qlk~~~e~lp 861 (1020)
.+|+..+.+++++|+.+.+.+..-+++.+ ++++.+. ...|.+. ..+=|++|..|++.|.++.-
T Consensus 131 T~~y~D~~arl~~l~~~~~rl~~ll~ka~-~~~d~l~-ie~~L~~---v~~eIe~~~~~~~~l~~~v~ 193 (262)
T PF14257_consen 131 TEQYVDLEARLKNLEAEEERLLELLEKAK-TVEDLLE-IERELSR---VRSEIEQLEGQLKYLDDRVD 193 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHHHH-HHHHHHH---HHHHHHHHHHHHHHHHHhhc
Confidence 56777778888888777777766666444 6666333 3344444 67778999999999988754
No 337
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=31.11 E-value=2e+02 Score=38.62 Aligned_cols=9 Identities=44% Similarity=0.527 Sum_probs=3.9
Q ss_pred EEEEcCCCc
Q 001721 960 TLVALPGGL 968 (1020)
Q Consensus 960 t~~~~~~g~ 968 (1020)
.|.+.|.|.
T Consensus 1059 ~~~~~~~~~ 1067 (1164)
T TIGR02169 1059 ELSAKPKGK 1067 (1164)
T ss_pred EEEEEcCCC
Confidence 344445443
No 338
>PRK14158 heat shock protein GrpE; Provisional
Probab=31.07 E-value=3.2e+02 Score=29.19 Aligned_cols=57 Identities=9% Similarity=0.043 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 001721 794 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTA 851 (1020)
Q Consensus 794 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~eE~~k~~aake~iksl~~ 851 (1020)
.+++..|+.|+..|+.+.-...+|++-++|+.+.-...+.+-+. .+.++++|-.+.+
T Consensus 46 e~~l~~le~e~~el~d~~lR~~AefeN~RkR~~kE~e~~~~~a~-~~~~~~lLpV~Dn 102 (194)
T PRK14158 46 EEALAAKEAEAAANWDKYLRERADLENYRKRVQKEKEELLKYGN-ESLILEILPAVDN 102 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhHHhH
Confidence 56778888888888888888888888888887765554444332 3445555544443
No 339
>PF07303 Occludin_ELL: Occludin homology domain; InterPro: IPR010844 This represents a conserved region approximately 100 residues long within eukaryotic occludin proteins and the RNA polymerase II elongation factor ELL. Occludin is an integral membrane protein that localises to tight junctions [], while ELL is an elongation factor that can increase the catalytic rate of RNA polymerase II transcription by suppressing transient pausing by polymerase at multiple sites along the DNA []. This shared domain is thought to mediate protein interactions [].; PDB: 1WPA_A 3G7C_A 1XAW_A.
Probab=30.97 E-value=1.7e+02 Score=27.88 Aligned_cols=47 Identities=28% Similarity=0.286 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH--HHHHhhhh
Q 001721 794 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVA--GEETAKCR 840 (1020)
Q Consensus 794 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a--~eE~~k~~ 840 (1020)
-+|-..|.++|.+..++...++.+|+.+...-+|--.++ .+|-.|.|
T Consensus 21 y~EYk~L~~~v~~v~~~f~~L~~~l~~l~~~s~ey~~i~~I~~eY~k~K 69 (101)
T PF07303_consen 21 YDEYKELHAEVDAVSRRFQELDSELKRLPPGSQEYKRIAQILQEYNKKK 69 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHS-TTSHHHHHHH---HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHH
Confidence 678899999999999999999999999988766655554 46777765
No 340
>PF04642 DUF601: Protein of unknown function, DUF601; InterPro: IPR006736 This family consists of several uncharacterised plant proteins which share a conserved region.
Probab=30.85 E-value=2.6e+02 Score=30.75 Aligned_cols=73 Identities=26% Similarity=0.342 Sum_probs=39.2
Q ss_pred hhhhhhhHHH-HHHHHHHHHHHH-----------HHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 001721 787 VDDAKRTSEE-VIKLRAQVEELT-----------RKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTAQLK 854 (1020)
Q Consensus 787 ~~~l~~~~qe-v~~l~~qv~~L~-----------~~~~~~~~ei~~~~~~~~ea~~~a~eE~~k~~aake~iksl~~qlk 854 (1020)
.|+||++|+| -.+....+..|. -++-..|.||+..++- +|--+-|.++|.+ ..+-+|.+.+|+.
T Consensus 152 ~~EmK~~Nkenylrfa~KLG~~~~efn~~f~she~~l~dkekEl~sfK~s-EeeNar~V~kAns---VldRmk~aEaqvn 227 (311)
T PF04642_consen 152 FDEMKEVNKENYLRFAGKLGKLILEFNSVFLSHEDQLSDKEKELESFKRS-EEENARAVEKANS---VLDRMKEAEAQVN 227 (311)
T ss_pred hHHHhhhhhhhhhhhHHHHHHHHHHhhccccccccccccHHHHHHHHhhh-hhhhHHHHHHHHH---HHHHHHHHHhhhh
Confidence 6888888776 233333333322 2345566777776543 3334444455444 5555666666666
Q ss_pred H-------HhhhCCCc
Q 001721 855 D-------MAEMLPVG 863 (1020)
Q Consensus 855 ~-------~~e~lp~~ 863 (1020)
+ |+.||-+|
T Consensus 228 eLEvsN~DLsaKLe~g 243 (311)
T PF04642_consen 228 ELEVSNIDLSAKLEPG 243 (311)
T ss_pred heecccHHHHHhhcCC
Confidence 3 45555544
No 341
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=30.61 E-value=2e+02 Score=25.31 Aligned_cols=13 Identities=38% Similarity=0.588 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHhh
Q 001721 846 IKSLTAQLKDMAE 858 (1020)
Q Consensus 846 iksl~~qlk~~~e 858 (1020)
||.+..||++|.+
T Consensus 36 i~~~~~~l~~I~~ 48 (71)
T PF10779_consen 36 IKNLNKQLEKIKS 48 (71)
T ss_pred HHHHHHHHHHHHH
Confidence 6777777777654
No 342
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=30.56 E-value=1.1e+02 Score=26.20 Aligned_cols=24 Identities=33% Similarity=0.464 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHH
Q 001721 804 VEELTRKSQLQEIELERTTRQLKE 827 (1020)
Q Consensus 804 v~~L~~~~~~~~~ei~~~~~~~~e 827 (1020)
|+.|+.+...++.||.+++..+..
T Consensus 23 v~EL~~RIa~L~aEI~R~~~~~~~ 46 (59)
T PF06698_consen 23 VEELEERIALLEAEIARLEAAIAK 46 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666778888888888887765543
No 343
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=30.55 E-value=1.7e+02 Score=24.87 Aligned_cols=35 Identities=17% Similarity=0.319 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 001721 794 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEA 828 (1020)
Q Consensus 794 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea 828 (1020)
..+|..|.++|..|.+....+..+++..+..+.-|
T Consensus 9 s~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRA 43 (56)
T PF04728_consen 9 SSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARA 43 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777777777777777777777666544443
No 344
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=30.46 E-value=3.9e+02 Score=23.69 Aligned_cols=25 Identities=16% Similarity=0.105 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001721 799 KLRAQVEELTRKSQLQEIELERTTR 823 (1020)
Q Consensus 799 ~l~~qv~~L~~~~~~~~~ei~~~~~ 823 (1020)
+|.++|.+|..+.+....+++...-
T Consensus 2 ~Lea~~~~Lr~rLd~~~rk~~~~~~ 26 (69)
T PF14197_consen 2 KLEAEIATLRNRLDSLTRKNSVHEI 26 (69)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666666666543
No 345
>PRK14147 heat shock protein GrpE; Provisional
Probab=30.46 E-value=2.5e+02 Score=29.42 Aligned_cols=56 Identities=13% Similarity=0.222 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 001721 794 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLT 850 (1020)
Q Consensus 794 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~eE~~k~~aake~iksl~ 850 (1020)
.+|+.+|++|+..|+.+.-.+.+|++-++|+.+.-..-+.+-+. .+.+++++-.+.
T Consensus 24 ~~~l~~l~~e~~elkd~~lR~~Ad~eN~rkR~~kE~e~~~~~a~-~~~~~~lLpv~D 79 (172)
T PRK14147 24 KAEVESLRSEIALVKADALRERADLENQRKRIARDVEQARKFAN-EKLLGELLPVFD 79 (172)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhhh
Confidence 45667777788888777777777877777776654433333222 244444444333
No 346
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=30.45 E-value=88 Score=40.46 Aligned_cols=66 Identities=21% Similarity=0.303 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhC
Q 001721 795 EEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTAQLKDMAEML 860 (1020)
Q Consensus 795 qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~eE~~k~~aake~iksl~~qlk~~~e~l 860 (1020)
...+.+..+...|+++.+.++.|+++.++++...-.++..+.+.-.+.|+-.+-+..++.++.++|
T Consensus 807 ~~~id~~~e~~rl~k~~~k~~~e~~~~~~kl~ne~f~~kAp~~vv~~e~~~~~~~~~~~~~l~~~l 872 (877)
T COG0525 807 AGLIDLAAELARLEKELEKLEKEIDRIEKKLSNEGFVAKAPEEVVEKEKEKLAEYQVKLAKLEERL 872 (877)
T ss_pred cchhhHHHHHhhHHHHHHHHHHHHHHHHHhhcchhhhhcCCHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 334556667888888899999999999999987776766666666666666666666666665543
No 347
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=30.45 E-value=2.9e+02 Score=31.37 Aligned_cols=64 Identities=25% Similarity=0.392 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhCCCc
Q 001721 795 EEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTAQLKDMAEMLPVG 863 (1020)
Q Consensus 795 qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~eE~~k~~aake~iksl~~qlk~~~e~lp~~ 863 (1020)
+++.+++.++..|.........+|..+.+.++. ..+.+-+.|.++.+| .|....+++-||+--|
T Consensus 214 e~~ve~~~~~~e~~ee~~~~~~elre~~k~ik~--l~~~~~~~~~~~~~e---e~kera~ei~EKfk~G 277 (294)
T COG1340 214 EEFVELSKKIDELHEEFRNLQNELRELEKKIKA--LRAKEKAAKRREKRE---ELKERAEEIYEKFKRG 277 (294)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH---HHHHHHHHHHHHHhCC
Confidence 333344444444444444444444433333332 233444444444444 3333444555555444
No 348
>PRK14145 heat shock protein GrpE; Provisional
Probab=30.25 E-value=3.2e+02 Score=29.19 Aligned_cols=57 Identities=9% Similarity=0.094 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 001721 794 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTA 851 (1020)
Q Consensus 794 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~eE~~k~~aake~iksl~~ 851 (1020)
.+++.+|+.++..|+.+.-...+|++-++|+++.-..-+.+.+. -+.+++++-.+.+
T Consensus 51 ~~~l~~le~e~~el~d~~lR~~AEfeN~rkR~~kE~e~~~~~a~-e~~~~~LLpV~Dn 107 (196)
T PRK14145 51 KQKLQQKEVEAQEYLDIAQRLKAEFENYRKRTEKEKSEMVEYGK-EQVILELLPVMDN 107 (196)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhHHhH
Confidence 34455566666666666666666666666665554443333332 2444454444443
No 349
>PRK00295 hypothetical protein; Provisional
Probab=30.23 E-value=3.8e+02 Score=23.57 Aligned_cols=15 Identities=13% Similarity=0.182 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHhh
Q 001721 844 DVIKSLTAQLKDMAE 858 (1020)
Q Consensus 844 e~iksl~~qlk~~~e 858 (1020)
.-++.|+.||+++..
T Consensus 40 ~ql~~L~~rl~~~~~ 54 (68)
T PRK00295 40 LQMAALIKRQEEMVG 54 (68)
T ss_pred HHHHHHHHHHHHhhc
Confidence 345667777877753
No 350
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=30.20 E-value=4e+02 Score=24.28 Aligned_cols=17 Identities=6% Similarity=0.202 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 001721 803 QVEELTRKSQLQEIELE 819 (1020)
Q Consensus 803 qv~~L~~~~~~~~~ei~ 819 (1020)
|+..+-++...+-..++
T Consensus 48 e~~~ll~~~n~l~~dv~ 64 (90)
T PF06103_consen 48 EINDLLHNTNELLEDVN 64 (90)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 351
>PF07061 Swi5: Swi5; InterPro: IPR010760 This entry represents Swi5 and is involved in meiotic DNA repair synthesis and meiotic joint molecule formation []. It is known to interact with Swi2, Rhp51 and Swi6 [].
Probab=30.16 E-value=1.5e+02 Score=27.30 Aligned_cols=19 Identities=37% Similarity=0.482 Sum_probs=9.9
Q ss_pred HHHHHHHHHH--HHHHHhhhC
Q 001721 842 AKDVIKSLTA--QLKDMAEML 860 (1020)
Q Consensus 842 ake~iksl~~--qlk~~~e~l 860 (1020)
.|+-|+-|-. .+||++-.|
T Consensus 38 v~~hI~lLheYNeiKD~gQ~L 58 (83)
T PF07061_consen 38 VKRHIKLLHEYNEIKDIGQGL 58 (83)
T ss_pred HHHHHHHHHHHhHHHHHHHHH
Confidence 4455555554 566655443
No 352
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=30.08 E-value=1.1e+02 Score=28.94 Aligned_cols=47 Identities=13% Similarity=0.246 Sum_probs=34.0
Q ss_pred CCCcchhhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 001721 781 ASPKIVVDDAKRT-SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKE 827 (1020)
Q Consensus 781 ~~~~~~~~~l~~~-~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~e 827 (1020)
.|-+...+++... .+.+..+...++.|+.+.+.++.+++.++++++|
T Consensus 55 vfv~~~~~ea~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~ 102 (105)
T cd00632 55 VLVKQEKEEARTELKERLETIELRIKRLERQEEDLQEKLKELQEKIQQ 102 (105)
T ss_pred HHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666 6667777778888888888888888888887776
No 353
>PLN02381 valyl-tRNA synthetase
Probab=30.08 E-value=72 Score=42.65 Aligned_cols=64 Identities=13% Similarity=0.210 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-------HHHHHHHhhhhhHHHHHHHHHHHHHHHh
Q 001721 794 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEAL-------AVAGEETAKCRAAKDVIKSLTAQLKDMA 857 (1020)
Q Consensus 794 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~-------~~a~eE~~k~~aake~iksl~~qlk~~~ 857 (1020)
.++++.+.+|+..|..+.+.++.||+++++++...- .+..+|-+|.....+-|..|..+|..+.
T Consensus 989 l~~~iD~~~E~~rL~K~l~klekei~~~~~kLsN~~F~~KAP~~vve~e~~kl~~~~~~l~~l~~~l~~l~ 1059 (1066)
T PLN02381 989 AQGAVNAEAELEKLRNKMDEIQKQQEKLEKKMNASGYKEKVPANIQEEDARKLTKLLQELEFFEKESKRLE 1059 (1066)
T ss_pred CCcccCHHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556677777777777788888888888776432 4555666666666666776666666554
No 354
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=30.08 E-value=86 Score=29.22 Aligned_cols=47 Identities=21% Similarity=0.279 Sum_probs=35.5
Q ss_pred CCCcchhhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 001721 781 ASPKIVVDDAKRT-SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKE 827 (1020)
Q Consensus 781 ~~~~~~~~~l~~~-~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~e 827 (1020)
.|-+...+++.+. .+++..+..+++.|+.+.+.++.+++++++++.+
T Consensus 54 ~fv~~~~~~~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l~~ 101 (106)
T PF01920_consen 54 MFVKQDKEEAIEELEERIEKLEKEIKKLEKQLKYLEKKLKELKKKLYE 101 (106)
T ss_dssp EEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555566666666 7777888888888888888888888888877764
No 355
>smart00706 TECPR Beta propeller repeats in Physarum polycephalum tectonins, Limulus lectin L-6 and animal hypothetical proteins.
Probab=30.00 E-value=91 Score=23.19 Aligned_cols=25 Identities=24% Similarity=0.353 Sum_probs=22.0
Q ss_pred CcEEEEEecC-CEEEEEEeCCcEEEe
Q 001721 285 INVELVACGE-HHTCAVTLSGDMYTW 309 (1020)
Q Consensus 285 ~~I~~VacG~-~ht~aLT~dG~VysW 309 (1020)
..+++|++|. ....+|+.+|+||..
T Consensus 8 g~l~~isvg~~~~vW~V~~~g~i~~r 33 (35)
T smart00706 8 GELVQVSVGPSDTVWAVNSDGNIYRR 33 (35)
T ss_pred CCEEEEEECCCCeEEEEcCCCCEEEE
Confidence 4789999999 888999999999964
No 356
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=29.98 E-value=4e+02 Score=27.52 Aligned_cols=42 Identities=21% Similarity=0.276 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhh
Q 001721 794 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAK 838 (1020)
Q Consensus 794 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~eE~~k 838 (1020)
.+|..+++.|...+..+. +.+|+..+++.++-+.-|.+|+.+
T Consensus 56 l~~Ae~~~~eA~~~~~e~---e~~l~~a~~ea~~ii~~A~~ea~~ 97 (173)
T PRK13460 56 INKASELRLEAEALLKDY---EARLNSAKDEANAIVAEAKSDALK 97 (173)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666665555543 444444555555444444444443
No 357
>PRK07857 hypothetical protein; Provisional
Probab=29.97 E-value=2.1e+02 Score=27.51 Aligned_cols=12 Identities=25% Similarity=0.362 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHH
Q 001721 842 AKDVIKSLTAQL 853 (1020)
Q Consensus 842 ake~iksl~~ql 853 (1020)
-++||+.+..+|
T Consensus 75 E~eVl~rl~~~l 86 (106)
T PRK07857 75 EMKVIERYREEL 86 (106)
T ss_pred HHHHHHHHHHHh
Confidence 356676666654
No 358
>KOG3564 consensus GTPase-activating protein [General function prediction only]
Probab=29.89 E-value=2.4e+02 Score=33.85 Aligned_cols=71 Identities=25% Similarity=0.337 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------------HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhh
Q 001721 794 SEEVIKLRAQVEELTRKSQLQEIELERTTRQ--------------LKEALAVAGEETAKCRAAKDVIKSLTAQLKDMAEM 859 (1020)
Q Consensus 794 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~--------------~~ea~~~a~eE~~k~~aake~iksl~~qlk~~~e~ 859 (1020)
..|.++|+.--+...++|+-.+.|+.+++.. ++.|-....-|....|+|+--...|..|.+.++|-
T Consensus 27 e~ef~rl~k~fed~~ek~~r~~ae~~~~~~~L~Ka~tk~~~ldvklkha~~~vda~ik~rr~ae~d~~~~E~~i~~i~d~ 106 (604)
T KOG3564|consen 27 EDEFIRLRKDFEDFEEKWKRTDAELGKYKDLLAKAETKRSALDVKLKHARNQVDAEIKRRRRAEADCEKLETQIQLIKDM 106 (604)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 7788999998888889998888888776653 44556667778888899988888888887777777
Q ss_pred CCCcc
Q 001721 860 LPVGA 864 (1020)
Q Consensus 860 lp~~~ 864 (1020)
|--+.
T Consensus 107 l~~~~ 111 (604)
T KOG3564|consen 107 LKCDI 111 (604)
T ss_pred Hhccc
Confidence 66554
No 359
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=29.87 E-value=14 Score=30.66 Aligned_cols=28 Identities=36% Similarity=0.922 Sum_probs=16.9
Q ss_pred CCCCCcCcccc------ccccccccCCceEeecC
Q 001721 589 CSGCRIPFNFK------RKRHNCYNCGLVYCHTC 616 (1020)
Q Consensus 589 Cs~C~~~Fs~~------~krhhC~~CG~v~C~~C 616 (1020)
|-+|..+|.-. ..+..|..|..+||.+|
T Consensus 2 CfgC~~~~~~~~~~~~~~~~y~C~~C~~~FC~dC 35 (51)
T PF07975_consen 2 CFGCQKPFPDGPEKKADSSRYRCPKCKNHFCIDC 35 (51)
T ss_dssp ETTTTEE-TTS-------EEE--TTTT--B-HHH
T ss_pred CccCCCCCCCcccccccCCeEECCCCCCccccCc
Confidence 67888888754 35678999999999998
No 360
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=29.83 E-value=3.2e+02 Score=34.92 Aligned_cols=58 Identities=28% Similarity=0.378 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhh
Q 001721 794 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTAQLKDMAE 858 (1020)
Q Consensus 794 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~eE~~k~~aake~iksl~~qlk~~~e 858 (1020)
.-||+||+.|...+.+.=-.+-..||.++++++.|-.-..+--+| |--|+++|+.|..
T Consensus 264 ~~EiqKL~qQL~qve~EK~~L~~~L~e~Q~qLe~a~~als~q~ek-------i~~L~e~l~aL~~ 321 (717)
T PF09730_consen 264 LSEIQKLKQQLLQVEREKSSLLSNLQESQKQLEHAQGALSEQQEK-------INRLTEQLDALRK 321 (717)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhh
Confidence 889999999888888888888888888888888765555544444 5556666665544
No 361
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=29.81 E-value=2.1e+02 Score=37.73 Aligned_cols=65 Identities=18% Similarity=0.188 Sum_probs=44.2
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 001721 787 VDDAKRTSEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTA 851 (1020)
Q Consensus 787 ~~~l~~~~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~eE~~k~~aake~iksl~~ 851 (1020)
..+.++..+|+....++++.|+.+.+..+.|.|..+.....--.-+..|..|..+++|.+|.-..
T Consensus 740 ~~ei~~~~~eIe~~~~~~e~l~~e~e~~~~e~~e~~~~~~~~~~~l~~e~~~l~~l~~el~~r~d 804 (1074)
T KOG0250|consen 740 AREIKKKEKEIEEKEAPLEKLKEELEHIELEAQELEEYYAAGREKLQGEISKLDALKEELKLRED 804 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 33344447777777777888888888777777777776666666666677777777776664433
No 362
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=29.78 E-value=4.1e+02 Score=30.38 Aligned_cols=19 Identities=11% Similarity=0.335 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 001721 794 SEEVIKLRAQVEELTRKSQ 812 (1020)
Q Consensus 794 ~qev~~l~~qv~~L~~~~~ 812 (1020)
+.+|.+|+.+|++|+.+.+
T Consensus 87 ~~~i~~l~~~i~~l~~~i~ 105 (301)
T PF06120_consen 87 KRAIEDLQKKIDSLKDQIK 105 (301)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5555566666666665554
No 363
>PRK09343 prefoldin subunit beta; Provisional
Probab=29.62 E-value=1.2e+02 Score=29.78 Aligned_cols=48 Identities=15% Similarity=0.172 Sum_probs=26.5
Q ss_pred CCcchhhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 001721 782 SPKIVVDDAKRT-SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEAL 829 (1020)
Q Consensus 782 ~~~~~~~~l~~~-~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~ 829 (1020)
|-+...+++++. ...+.-+...++.|+.+-+.++.++++++++++++.
T Consensus 64 lv~qd~~e~~~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ll 112 (121)
T PRK09343 64 LVKVDKTKVEKELKERKELLELRSRTLEKQEKKLREKLKELQAKINEML 112 (121)
T ss_pred HhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555544 444444445666666666666666666666666544
No 364
>PRK01885 greB transcription elongation factor GreB; Reviewed
Probab=29.59 E-value=1.3e+02 Score=30.87 Aligned_cols=46 Identities=15% Similarity=0.190 Sum_probs=31.6
Q ss_pred HHHHHHHhHHHHHHHH-HHHHhhhhhHHHHHHHHHHHHHHHhhhCCC
Q 001721 817 ELERTTRQLKEALAVA-GEETAKCRAAKDVIKSLTAQLKDMAEMLPV 862 (1020)
Q Consensus 817 ei~~~~~~~~ea~~~a-~eE~~k~~aake~iksl~~qlk~~~e~lp~ 862 (1020)
+..+..+.+++|.+.- -.|-+--+||||-...|..++.+|..+|--
T Consensus 26 ~r~e~~~~i~~Ar~~GDl~ENaeY~aAk~~~~~~e~rI~~L~~~L~~ 72 (157)
T PRK01885 26 ERPEVTQKVSWAASLGDRSENADYIYGKKRLREIDRRVRFLTKRLEN 72 (157)
T ss_pred hhHHHHHHHHHHHHcCCcchhhcHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 3444444555554433 135555789999999999999999988854
No 365
>PF07295 DUF1451: Protein of unknown function (DUF1451); InterPro: IPR009912 This family consists of several hypothetical bacterial proteins of around 160 residues in length. Members of this family contain four highly conserved cysteine resides toward the C-terminal region of the protein. The function of this family is unknown.
Probab=29.51 E-value=1.3e+02 Score=30.61 Aligned_cols=50 Identities=24% Similarity=0.247 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhC
Q 001721 805 EELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTAQLKDMAEML 860 (1020)
Q Consensus 805 ~~L~~~~~~~~~ei~~~~~~~~ea~~~a~eE~~k~~aake~iksl~~qlk~~~e~l 860 (1020)
+.+++..+.++..|+.+++++.++-.|-+||+++ +++ .|...|+++++-+
T Consensus 7 e~~~~~~~~L~~~le~a~e~~~~~~elT~eEl~l---v~~---ylkRDl~~~a~~~ 56 (146)
T PF07295_consen 7 EALEHSEEELQEALEKAKEYLVAAGELTREELAL---VSA---YLKRDLEEFARYY 56 (146)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHHhhcCHHHHHH---HHH---HHHHHHHHHHHHH
Confidence 3455666777788888888888888888888887 333 3334555555443
No 366
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=29.49 E-value=1.8e+02 Score=30.37 Aligned_cols=10 Identities=0% Similarity=0.424 Sum_probs=3.7
Q ss_pred HHHHHHHHhH
Q 001721 816 IELERTTRQL 825 (1020)
Q Consensus 816 ~ei~~~~~~~ 825 (1020)
.+|+.+..++
T Consensus 127 ~ki~e~~~ki 136 (177)
T PF07798_consen 127 LKIQELNNKI 136 (177)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 367
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=29.46 E-value=4.6e+02 Score=25.83 Aligned_cols=42 Identities=26% Similarity=0.285 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhh
Q 001721 794 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAK 838 (1020)
Q Consensus 794 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~eE~~k 838 (1020)
.++..+++.|...+..+ .+.+|+..+++.++-..-|.+|+.+
T Consensus 45 l~~Ae~~~~ea~~~~~~---~e~~L~~a~~ea~~i~~~a~~~a~~ 86 (140)
T PRK07353 45 RAEAKERLAEAEKLEAQ---YEQQLASARKQAQAVIAEAEAEADK 86 (140)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555544 3344444444444444444444443
No 368
>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7. The family contains human CHMP1. CHMP1 (CHromatin Modifying Protein; CHarged Multivesicular body Protein), is encoded by an alternative open reading frame in the PRSM1 gene [] and is conserved in both complex and simple eukaryotes. CHMP1 contains a predicted bipartite nuclear localisation signal and distributes as distinct forms to the cytoplasm and the nuclear matrix in all cell lines tested. Human CHMP1 is strongly implicated in multivesicular body formation. A multivesicular body is a vesicle-filled endosome that targets proteins to the interior of lysosomes. Immunocytochemistry and biochemical fractionation localise CHMP1 to early endosomes and CHMP1 physically interacts with SKD1/VPS4, a highly conserved protein directly linked to multivesicular body sorting in yeast. Similar to the action of a mutant SKD1 protein, over expression of a fusion derivative of human CHMP1 dilates endosomal compartments and disrupts the normal distribution of several endosomal markers. Genetic studies in Saccharomyces cerevisiae (Baker's yeast) further support a conserved role of CHMP1 in vesicle trafficking. Deletion of CHM1, the budding yeast homologue of CHMP1, results in defective sorting of carboxypeptidases S and Y and produces abnormal, multi-lamellar prevacuolar compartments. This phenotype classifies CHM1 as a member of the class E vacuolar protein sorting genes []. ; GO: 0015031 protein transport; PDB: 2V6X_B 2W2U_D 2GD5_D 3FRT_B 3FRV_A 4ABM_D 3EAB_H 3HTU_D.
Probab=29.40 E-value=3.2e+02 Score=27.56 Aligned_cols=34 Identities=18% Similarity=0.428 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 001721 797 VIKLRAQVEELTRKSQLQEIELERTTRQLKEALA 830 (1020)
Q Consensus 797 v~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~ 830 (1020)
+.+|+.+...|.++.+.++.++.++.++++++..
T Consensus 3 i~~Lk~~~~~L~~~~~~le~~i~~~~~~~k~~~~ 36 (171)
T PF03357_consen 3 ILKLKKTIRRLEKQIKRLEKKIKKLEKKAKKAIK 36 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5567777777777777777777777777776654
No 369
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=29.26 E-value=2.2e+02 Score=38.13 Aligned_cols=12 Identities=50% Similarity=0.711 Sum_probs=6.9
Q ss_pred EEEEcCCCccce
Q 001721 960 TLVALPGGLKDL 971 (1020)
Q Consensus 960 t~~~~~~g~~~~ 971 (1020)
.+..+.+|.+.+
T Consensus 1071 ~~~~lSgge~~~ 1082 (1164)
T TIGR02169 1071 RLEAMSGGEKSL 1082 (1164)
T ss_pred cchhcCcchHHH
Confidence 345666666654
No 370
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=29.24 E-value=1e+02 Score=29.39 Aligned_cols=25 Identities=16% Similarity=0.357 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHH----HHHHHHHHHHhHH
Q 001721 802 AQVEELTRKSQL----QEIELERTTRQLK 826 (1020)
Q Consensus 802 ~qv~~L~~~~~~----~~~ei~~~~~~~~ 826 (1020)
+|++.|+++.++ +..+|++++++|+
T Consensus 72 EqL~~Lk~kl~~e~~~~~k~i~~le~~I~ 100 (100)
T PF04568_consen 72 EQLKKLKEKLKEEIEHHRKEIDELEKHIE 100 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 477888888777 8888888777764
No 371
>PF03920 TLE_N: Groucho/TLE N-terminal Q-rich domain; InterPro: IPR005617 The N-terminal domain of the Grouch/TLE co-repressor proteins are involved in oligomerisation.; GO: 0005515 protein binding
Probab=29.17 E-value=95 Score=30.92 Aligned_cols=42 Identities=21% Similarity=0.142 Sum_probs=31.4
Q ss_pred CCcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001721 782 SPKIVVDDAKRTSEEVIKLRAQVEELTRKSQLQEIELERTTR 823 (1020)
Q Consensus 782 ~~~~~~~~l~~~~qev~~l~~qv~~L~~~~~~~~~ei~~~~~ 823 (1020)
+--+.-|.+.+-.+|...|++|..+|+-.||.+..|-...++
T Consensus 17 ~KfT~~es~drIKeEf~~lqaq~hslk~E~eKla~EK~emqr 58 (135)
T PF03920_consen 17 FKFTTSESCDRIKEEFQFLQAQYHSLKLECEKLASEKTEMQR 58 (135)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHhhhhhcchhhcccchHHH
Confidence 334456777766899999999999999999988755444333
No 372
>TIGR00019 prfA peptide chain release factor 1. This model describes peptide chain release factor 1 (PrfA, RF-1), and excludes the related peptide chain release factor 2 (PrfB, RF-2). RF-1 helps recognize and terminate translation at UAA and UAG stop codons. The mitochondrial release factors are prfA-like, although not included above the trusted cutoff for this model. RF-1 does not have a translational frameshift.
Probab=29.15 E-value=3.3e+02 Score=31.92 Aligned_cols=49 Identities=20% Similarity=0.372 Sum_probs=27.6
Q ss_pred HHHHHHhHHHHHHHHHH-HHhhhhhHHHHHHHHHHHHHHHhhh-----CCCcccc
Q 001721 818 LERTTRQLKEALAVAGE-ETAKCRAAKDVIKSLTAQLKDMAEM-----LPVGAVR 866 (1020)
Q Consensus 818 i~~~~~~~~ea~~~a~e-E~~k~~aake~iksl~~qlk~~~e~-----lp~~~~~ 866 (1020)
++++.+.++++..|+.| +..=.+-|.+-++.|..+|+++..+ ||.+..+
T Consensus 55 ~~~~~~~~~~~~el~~~~D~e~~~~a~~e~~~l~~~~~~~e~~l~~~ll~~~~~D 109 (360)
T TIGR00019 55 YQQAQEDIKEAKEILEESDPEMREMAKEELEELEEKIEELEEQLKVLLLPKDPND 109 (360)
T ss_pred HHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCc
Confidence 44444555555555532 1112334556667788888887654 7776544
No 373
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=29.13 E-value=1.3e+02 Score=31.77 Aligned_cols=41 Identities=20% Similarity=0.262 Sum_probs=26.8
Q ss_pred hhhhhhh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 001721 787 VDDAKRT---SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKE 827 (1020)
Q Consensus 787 ~~~l~~~---~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~e 827 (1020)
.++|++. .++-.+++.++..|++..+.+|.+|..+.++|.+
T Consensus 11 d~~L~~~L~~l~~hq~~~~~I~~L~~e~~~ld~~i~~~~~~L~~ 54 (188)
T PF10018_consen 11 DDELSSALEELQEHQENQARIQQLRAEIEELDEQIRDILKQLKE 54 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555 4555566667777777777777777776666666
No 374
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=29.00 E-value=1.6e+02 Score=37.00 Aligned_cols=64 Identities=14% Similarity=0.152 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-------HHHHHHhhhhhHHHHHHHHHHHHHHHhhhC
Q 001721 797 VIKLRAQVEELTRKSQLQEIELERTTRQLKEALA-------VAGEETAKCRAAKDVIKSLTAQLKDMAEML 860 (1020)
Q Consensus 797 v~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~-------~a~eE~~k~~aake~iksl~~qlk~~~e~l 860 (1020)
..+++.+++.|+++.+.++.+|+++..++...-. .+.+=.....++++-|..|.++..+++|+|
T Consensus 558 ~~~~~~~~~~~e~~i~~le~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~w~~l~~~~ 628 (638)
T PRK10636 558 TQPLRKEIARLEKEMEKLNAQLAQAEEKLGDSELYDQSRKAELTACLQQQASAKSGLEECEMAWLEAQEQL 628 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555666666666666666665555533211 122323345567777888888888888766
No 375
>PRK12704 phosphodiesterase; Provisional
Probab=28.99 E-value=1.7e+02 Score=36.02 Aligned_cols=14 Identities=21% Similarity=0.363 Sum_probs=7.1
Q ss_pred hHHHHHHHHHHHHh
Q 001721 824 QLKEALAVAGEETA 837 (1020)
Q Consensus 824 ~~~ea~~~a~eE~~ 837 (1020)
+|++...|-.|||.
T Consensus 143 ~l~~~a~lt~~ea~ 156 (520)
T PRK12704 143 ELERISGLTAEEAK 156 (520)
T ss_pred HHHHHhCCCHHHHH
Confidence 34455555555554
No 376
>cd00900 PH-like Pleckstrin homology-like domain. Pleckstrin homology-like domain. This family includes the PH domain, both the Shc-like and IRS-like PTB domains, the ran-binding domain, the EVH1 domain, a domain in neurobeachin and the third domain of FERM. All of these domains have a PH fold, but lack significant sequence similarity. They are generally involved in targeting to protein to the appropriate cellular location or interacting with a binding partner. The PH domain is commonly found in eukaryotic signaling proteins. This domain family possesses multiple functions including the ability to bind inositol phosphates and to other proteins.
Probab=28.99 E-value=31 Score=30.22 Aligned_cols=31 Identities=19% Similarity=0.480 Sum_probs=28.1
Q ss_pred cceEEEEec---CcccceeecCcccchhhhhhhH
Q 001721 17 YQSFSLIYN---DRSLDLICKDKDEAEVWFTGLK 47 (1020)
Q Consensus 17 ~~sfsl~~~---~~~ld~ickd~~~~~~w~~~l~ 47 (1020)
-..|.+++. .+.+-|-|.+..|++-|+..|+
T Consensus 64 ~~~F~i~~~~~~~~~~~~~~~~~~~~~~W~~al~ 97 (99)
T cd00900 64 PNCFAIVTKDRGRRVFVFQADSEEEAQEWVEALQ 97 (99)
T ss_pred CceEEEECCCCCcEEEEEEcCCHHHHHHHHHHHh
Confidence 358999998 7999999999999999999886
No 377
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=28.94 E-value=5.4e+02 Score=26.53 Aligned_cols=21 Identities=19% Similarity=0.191 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 001721 794 SEEVIKLRAQVEELTRKSQLQ 814 (1020)
Q Consensus 794 ~qev~~l~~qv~~L~~~~~~~ 814 (1020)
..+..+++++.+.+....+.+
T Consensus 50 L~~Ae~~k~eAe~l~a~ye~~ 70 (155)
T PRK06569 50 ITQADTLTIEVEKLNKYYNEE 70 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 555566666666666654433
No 378
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=28.90 E-value=1.9e+02 Score=32.16 Aligned_cols=58 Identities=10% Similarity=0.244 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhC
Q 001721 803 QVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTAQLKDMAEML 860 (1020)
Q Consensus 803 qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~eE~~k~~aake~iksl~~qlk~~~e~l 860 (1020)
++..|.+..+.+..++++...+.+..-.-+.+=-.+.+.....|+.|...+++|.+++
T Consensus 53 ~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~~~i~~l~~~~ 110 (264)
T PF06008_consen 53 ELESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQDNIQELIEQV 110 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444433333333333222222222333445555555555555555443
No 379
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=28.88 E-value=3.4e+02 Score=32.90 Aligned_cols=22 Identities=32% Similarity=0.483 Sum_probs=16.5
Q ss_pred hhhHHHHHHHHHHHHHHHhhhC
Q 001721 839 CRAAKDVIKSLTAQLKDMAEML 860 (1020)
Q Consensus 839 ~~aake~iksl~~qlk~~~e~l 860 (1020)
..|+|+-=+-||++|+||-+|-
T Consensus 263 Lq~~~da~~ql~aE~~EleDky 284 (596)
T KOG4360|consen 263 LQAYKDAQRQLTAELEELEDKY 284 (596)
T ss_pred HHHHHhhHHHHHHHHHHHHHHH
Confidence 4567777778899999986663
No 380
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=28.87 E-value=68 Score=27.35 Aligned_cols=31 Identities=29% Similarity=0.305 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001721 794 SEEVIKLRAQVEELTRKSQLQEIELERTTRQ 824 (1020)
Q Consensus 794 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~ 824 (1020)
.+||.-|+.++..|..+-.+++.|=+.++..
T Consensus 13 rEEVevLK~~I~eL~~~n~~Le~EN~~Lk~~ 43 (59)
T PF01166_consen 13 REEVEVLKEQIAELEERNSQLEEENNLLKQN 43 (59)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6788888888888888888888777666543
No 381
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=28.83 E-value=2.8e+02 Score=33.13 Aligned_cols=19 Identities=26% Similarity=0.431 Sum_probs=12.6
Q ss_pred hhhHHHHHHHHHHHHHHHh
Q 001721 839 CRAAKDVIKSLTAQLKDMA 857 (1020)
Q Consensus 839 ~~aake~iksl~~qlk~~~ 857 (1020)
+++-.|-|-.|..||+++.
T Consensus 430 ~~s~d~~I~dLqEQlrDlm 448 (493)
T KOG0804|consen 430 LGSKDEKITDLQEQLRDLM 448 (493)
T ss_pred HHHHHHHHHHHHHHHHhHh
Confidence 4455566777777777764
No 382
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=28.78 E-value=4.7e+02 Score=24.70 Aligned_cols=32 Identities=19% Similarity=0.319 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 001721 795 EEVIKLRAQVEELTRKSQLQEIELERTTRQLK 826 (1020)
Q Consensus 795 qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ 826 (1020)
.+..+|+.|...|.++...++.++.+.+.-++
T Consensus 6 ~~~q~l~~~~~~l~~~~~~l~~~~~E~~~v~~ 37 (105)
T cd00632 6 AQLQQLQQQLQAYIVQRQKVEAQLNENKKALE 37 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666666666666655544333
No 383
>PF10422 LRS4: Monopolin complex subunit LRS4; InterPro: IPR018479 Monopolin is a protein complex, originally identified in Saccharomyces cerevisiae (Baker's yeast), that is required for the segregation of homologous centromeres to opposite poles of a dividing cell during meiosis I []. The orthologous complex in Schizosaccharomyces pombe (Fission yeast) is not required for meiosis I chromosome segregation, but is proposed to play a similar physiological role in clamping microtubule binding sites []. In S. cerevisiae this subunit is called LRS4, and in S. pombe it is known as Mde4 [].; PDB: 3N7N_E.
Probab=28.75 E-value=19 Score=39.30 Aligned_cols=58 Identities=29% Similarity=0.322 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 001721 794 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTAQLK 854 (1020)
Q Consensus 794 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~eE~~k~~aake~iksl~~qlk 854 (1020)
+.|++-||.||..|+.+++.+-.|.++++ +++++ -.|-=| +|..++|-.|..|...|+
T Consensus 57 ~~E~l~LQrQi~qLt~~lQ~~~~eneklk-~~~K~-~kalle-Skl~~~kk~IdrlK~~l~ 114 (249)
T PF10422_consen 57 VDETLLLQRQITQLTSQLQSQKQENEKLK-ELQKT-QKALLE-SKLSNKKKEIDRLKLKLE 114 (249)
T ss_dssp -------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHH-HHHHH-HHHHHH-HHHHHHHHHHHHHHHHhh
Confidence 88999999999999999999998888774 33322 112222 467777888887664444
No 384
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=28.75 E-value=3.8e+02 Score=24.89 Aligned_cols=16 Identities=13% Similarity=0.258 Sum_probs=9.4
Q ss_pred HHhhhhhHHHHHHHHH
Q 001721 835 ETAKCRAAKDVIKSLT 850 (1020)
Q Consensus 835 E~~k~~aake~iksl~ 850 (1020)
=+.+.++|-|-|+++.
T Consensus 72 vs~rL~~a~e~Ir~vL 87 (89)
T PF13747_consen 72 VSRRLDSAIETIRAVL 87 (89)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3445666666666653
No 385
>PF12352 V-SNARE_C: Snare region anchored in the vesicle membrane C-terminus; PDB: 1GL2_C 2NPS_C.
Probab=28.71 E-value=1.8e+02 Score=24.91 Aligned_cols=48 Identities=21% Similarity=0.360 Sum_probs=37.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhCCC
Q 001721 815 EIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTAQLKDMAEMLPV 862 (1020)
Q Consensus 815 ~~ei~~~~~~~~ea~~~a~eE~~k~~aake~iksl~~qlk~~~e~lp~ 862 (1020)
...|+.+.+.+.|+..+|.+=....+.=.|.|+.....|.+|...||.
T Consensus 7 ~~~L~~s~~~~~e~~~~g~~~l~~L~~Qre~L~~~~~kl~~i~~~l~~ 54 (66)
T PF12352_consen 7 SDSLQRSHRMADETEEIGAATLEDLRSQREQLKRVRDKLDDIDSNLPK 54 (66)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 346777888888888888888888888888888888888888877764
No 386
>KOG1841 consensus Smad anchor for receptor activation [Defense mechanisms]
Probab=28.71 E-value=61 Score=42.35 Aligned_cols=54 Identities=19% Similarity=0.239 Sum_probs=41.9
Q ss_pred ccccCcCCccCCCCCcCccccccccccccCCceEeecCCCCcccccccCCCCCCCeeeCccchhhhhcc
Q 001721 579 KWVSGVDQSMCSGCRIPFNFKRKRHNCYNCGLVYCHTCSSKKSVKASMAPNPNKPYRVCDNCFGKLTKA 647 (1020)
Q Consensus 579 kwvs~~d~s~Cs~C~~~Fs~~~krhhC~~CG~v~C~~CSs~~~~~~~~~~~~~k~~RVC~~C~~~l~~~ 647 (1020)
-|+.+.-...|..|..+|.++.++|||+ |.++-. .. ..+..|+|..|...++..
T Consensus 650 Vw~aDg~aPng~la~t~~~~~~e~~hsr--~~ls~~----------~~---s~~~~~~~n~t~s~~rn~ 703 (1287)
T KOG1841|consen 650 VWFADGIAPNGELAETRFTFTGERHHSR--GKLSLL----------YS---SRKEARPCNITHSVLRNV 703 (1287)
T ss_pred eeccCCcCCCceecccceeeeccccccc--cccccc----------cc---ccccCCCCcccCccchhh
Confidence 4888888899999999999999999999 666511 11 135678999998887763
No 387
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=28.67 E-value=1.2e+02 Score=34.51 Aligned_cols=29 Identities=24% Similarity=0.319 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 001721 799 KLRAQVEELTRKSQLQEIELERTTRQLKE 827 (1020)
Q Consensus 799 ~l~~qv~~L~~~~~~~~~ei~~~~~~~~e 827 (1020)
.|..|++.|+++-+.++.|++.++++++.
T Consensus 36 ~l~~~~~~lr~e~~~l~~~~~~~~~~~~~ 64 (308)
T PF11382_consen 36 SLEDQFDSLREENDELRAELDALQAQLNA 64 (308)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555554
No 388
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=28.65 E-value=1.5e+02 Score=35.54 Aligned_cols=21 Identities=24% Similarity=0.414 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 001721 794 SEEVIKLRAQVEELTRKSQLQ 814 (1020)
Q Consensus 794 ~qev~~l~~qv~~L~~~~~~~ 814 (1020)
.+|+.+++.+++.|++....+
T Consensus 340 ~~~~~~~~~~l~~l~~~l~~l 360 (451)
T PF03961_consen 340 EEELEELKEELEKLKKNLKKL 360 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 444444444444444444333
No 389
>PF00015 MCPsignal: Methyl-accepting chemotaxis protein (MCP) signalling domain; InterPro: IPR004089 Methyl-accepting chemotaxis proteins (MCPs) are a family of bacterial receptors that mediate chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behaviour []. Environmental diversity gives rise to diversity in bacterial signalling receptors, and consequently there are many genes encoding MCPs []. For example, there are four well-characterised MCPs found in Escherichia coli: Tar (taxis towards aspartate and maltose, away from nickel and cobalt), Tsr (taxis towards serine, away from leucine, indole and weak acids), Trg (taxis towards galactose and ribose) and Tap (taxis towards dipeptides). MCPs share similar topology and signalling mechanisms. MCPs either bind ligands directly or interact with ligand-binding proteins, transducing the signal to downstream signalling proteins in the cytoplasm. MCPs undergo two covalent modifications: deamidation and reversible methylation at a number of glutamate residues. Attractants increase the level of methylation, while repellents decrease it. The methyl groups are added by the methyl-transferase cheR and are removed by the methylesterase cheB. Most MCPs are homodimers that contain the following organisation: an N-terminal signal sequence that acts as a transmembrane domain in the mature protein; a poorly-conserved periplasmic receptor (ligand-binding) domain; a second transmembrane domain; and a highly-conserved C-terminal cytoplasmic domain that interacts with downstream signalling components. The C-terminal domain contains the glycosylated glutamate residues. This entry represents the signalling domain found in several methyl-accepting chemotaxis proteins. This domain is thought to transduce the signal to CheA since it is highly conserved in very diverse MCPs.; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0016020 membrane; PDB: 2CH7_A 3ZX6_B 1QU7_A 3G6B_B 3UR1_C 3G67_B.
Probab=28.60 E-value=2.8e+02 Score=28.87 Aligned_cols=28 Identities=21% Similarity=0.245 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001721 794 SEEVIKLRAQVEELTRKSQLQEIELERT 821 (1020)
Q Consensus 794 ~qev~~l~~qv~~L~~~~~~~~~ei~~~ 821 (1020)
-+||.+|..+......+....=.+|+..
T Consensus 81 A~eir~LA~~t~~~~~~I~~~i~~i~~~ 108 (213)
T PF00015_consen 81 ADEIRKLAEQTSESAKEISEIIEEIQEQ 108 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhhhHHHHHHHHHhhhhhh
Confidence 4555556555555555444443333333
No 390
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=28.59 E-value=2.7e+02 Score=35.37 Aligned_cols=41 Identities=22% Similarity=0.307 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001721 794 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGE 834 (1020)
Q Consensus 794 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~e 834 (1020)
.+++..|+.++..|++++..++.++..+.+.++++|....+
T Consensus 240 ~~~i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~ 280 (670)
T KOG0239|consen 240 KKKIQALQQELEELKAELKELNDQVSLLTREVQEALKESNT 280 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456666666666666666666666666666665554444
No 391
>PRK00736 hypothetical protein; Provisional
Probab=28.33 E-value=2.5e+02 Score=24.76 Aligned_cols=46 Identities=22% Similarity=0.298 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhCCC
Q 001721 803 QVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTAQLKDMAEMLPV 862 (1020)
Q Consensus 803 qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~eE~~k~~aake~iksl~~qlk~~~e~lp~ 862 (1020)
.+..|+.+.-.||.-|+.+.+-|-+ --..|..|+.||+.|.+||-.
T Consensus 6 Ri~~LE~klafqe~tie~Ln~~v~~--------------Qq~~i~~L~~ql~~L~~rl~~ 51 (68)
T PRK00736 6 RLTELEIRVAEQEKTIEELSDQLAE--------------QWKTVEQMRKKLDALTERFLS 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHH
Confidence 3556666666666666555544433 223467788888888888844
No 392
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=28.30 E-value=2.2e+02 Score=38.60 Aligned_cols=9 Identities=11% Similarity=-0.042 Sum_probs=4.5
Q ss_pred cceeEEEEE
Q 001721 954 ETGVYITLV 962 (1020)
Q Consensus 954 e~gv~~t~~ 962 (1020)
+||+|-+++
T Consensus 588 ~~g~~~~a~ 596 (1163)
T COG1196 588 APGFLGLAS 596 (1163)
T ss_pred ccchhHHHH
Confidence 555554433
No 393
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=28.29 E-value=1.4e+02 Score=28.51 Aligned_cols=48 Identities=23% Similarity=0.274 Sum_probs=33.1
Q ss_pred CCcchhhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 001721 782 SPKIVVDDAKRT-SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEAL 829 (1020)
Q Consensus 782 ~~~~~~~~l~~~-~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~ 829 (1020)
|-+...++++.. ...+..+...++.|+.+.+.++.+++++++++++++
T Consensus 60 lv~~~~~e~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~~~~ 108 (110)
T TIGR02338 60 LVKTDKEEAIQELKEKKETLELRVKTLQRQEERLREQLKELQEKIQEAL 108 (110)
T ss_pred hheecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333345555555 556666677788888888888888888888887764
No 394
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=28.27 E-value=3.5e+02 Score=26.92 Aligned_cols=35 Identities=14% Similarity=0.342 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHH---HHHhHHHHHHHHHHHHhh
Q 001721 804 VEELTRKSQLQEIELER---TTRQLKEALAVAGEETAK 838 (1020)
Q Consensus 804 v~~L~~~~~~~~~ei~~---~~~~~~ea~~~a~eE~~k 838 (1020)
=+-|+++.+.++.+|++ ..+.+++-+.-+.++.+-
T Consensus 63 KkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~ 100 (126)
T PF07889_consen 63 KKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQ 100 (126)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 34455555555544433 233344444444444443
No 395
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=28.17 E-value=4.6e+02 Score=26.74 Aligned_cols=40 Identities=25% Similarity=0.336 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 001721 794 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEET 836 (1020)
Q Consensus 794 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~eE~ 836 (1020)
.++..+.+.++..+..+ .+.+|...+++.++.+.-|.+|+
T Consensus 48 l~~Ae~~~~ea~~~~~e---~e~~l~~A~~ea~~ii~~A~~~a 87 (164)
T PRK14473 48 LRDAEKVREQLANAKRD---YEAELAKARQEAAKIVAQAQERA 87 (164)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555544444 33334444444444444444333
No 396
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=28.10 E-value=5.6e+02 Score=25.31 Aligned_cols=54 Identities=11% Similarity=0.179 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 001721 798 IKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTA 851 (1020)
Q Consensus 798 ~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~eE~~k~~aake~iksl~~ 851 (1020)
..+.+++..+++.++.+....+.++++-+.-+.+=++.+....++|+=...+..
T Consensus 20 ~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~ 73 (132)
T PF07926_consen 20 EDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAEDIKELQQLREELQELQQ 73 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444444433333333333333333333333333
No 397
>PRK14157 heat shock protein GrpE; Provisional
Probab=28.03 E-value=2.6e+02 Score=30.58 Aligned_cols=56 Identities=7% Similarity=0.030 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 001721 794 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLT 850 (1020)
Q Consensus 794 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~eE~~k~~aake~iksl~ 850 (1020)
..|+.+|++|+..|+.+...+-.|.+.++|+.+.=...+.+.+- -+.+++++-.|.
T Consensus 83 ~~~l~~le~e~~e~kd~llR~~AEfeNyRKR~~rE~e~~~~~a~-~~~~~dLLpvlD 138 (227)
T PRK14157 83 LTPLGQAKKEAAEYLEALQRERAEFINYRNRTQKEQDRFRQHGI-IDVLTALLPALD 138 (227)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhhh
Confidence 45677777888888777777777777777777654444443332 234444444433
No 398
>KOG3576 consensus Ovo and related transcription factors [Transcription]
Probab=28.00 E-value=15 Score=38.88 Aligned_cols=33 Identities=36% Similarity=0.685 Sum_probs=19.6
Q ss_pred CcCCccCCCCCcCccccc------------cccccccCCceEeec
Q 001721 583 GVDQSMCSGCRIPFNFKR------------KRHNCYNCGLVYCHT 615 (1020)
Q Consensus 583 ~~d~s~Cs~C~~~Fs~~~------------krhhC~~CG~v~C~~ 615 (1020)
+.+.-.|..|+..|++.+ +||-|.-||..|-..
T Consensus 114 d~d~ftCrvCgK~F~lQRmlnrh~kch~~vkr~lct~cgkgfndt 158 (267)
T KOG3576|consen 114 DQDSFTCRVCGKKFGLQRMLNRHLKCHSDVKRHLCTFCGKGFNDT 158 (267)
T ss_pred CCCeeeeehhhhhhhHHHHHHHHhhhccHHHHHHHhhccCcccch
Confidence 344445677777776543 455677777666544
No 399
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=27.99 E-value=1.4e+02 Score=34.68 Aligned_cols=47 Identities=26% Similarity=0.278 Sum_probs=23.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhCCC
Q 001721 816 IELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTAQLKDMAEMLPV 862 (1020)
Q Consensus 816 ~ei~~~~~~~~ea~~~a~eE~~k~~aake~iksl~~qlk~~~e~lp~ 862 (1020)
.++...+.++.+.-..-.+..-.-+++++=|..|..||++...++-.
T Consensus 221 ~~l~~~~~~l~~l~~~~~~~~P~v~~l~~~i~~l~~~i~~e~~~i~~ 267 (362)
T TIGR01010 221 GELIRVQAQLAQLRSITPEQNPQVPSLQARIKSLRKQIDEQRNQLSG 267 (362)
T ss_pred HHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33334444444433333444555555666666666666665555443
No 400
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=27.97 E-value=3.9e+02 Score=33.72 Aligned_cols=62 Identities=26% Similarity=0.309 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHH---------HHHhhhhhHHHHHHHHHHHHHH-HhhhCCCcc
Q 001721 803 QVEELTRKSQLQEIELERTTR-QLKEALAVAG---------EETAKCRAAKDVIKSLTAQLKD-MAEMLPVGA 864 (1020)
Q Consensus 803 qv~~L~~~~~~~~~ei~~~~~-~~~ea~~~a~---------eE~~k~~aake~iksl~~qlk~-~~e~lp~~~ 864 (1020)
.+.+|+.+.+.++..|+.... ..+||..||. ++-+|.+++-|---.|..+|+- +.|..|++.
T Consensus 163 ~l~sL~~k~~~Le~~L~~le~~r~~e~~~La~~q~e~d~L~~qLsk~~~~le~q~tlv~~LR~YvGeq~p~~~ 235 (739)
T PF07111_consen 163 ALASLTSKAEELEKSLESLETRRAGEAKELAEAQREADLLREQLSKTQEELEAQVTLVEQLRKYVGEQVPPEV 235 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhCCccc
Confidence 456778888888887776665 4467766665 5677777777777777778874 558888763
No 401
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=27.94 E-value=4e+02 Score=27.18 Aligned_cols=60 Identities=13% Similarity=0.139 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhC
Q 001721 794 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTAQLKDMAEML 860 (1020)
Q Consensus 794 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~eE~~k~~aake~iksl~~qlk~~~e~l 860 (1020)
.++...|..|+....+..+.++.||.+....++. +-+..+.-+.-|+.++.++++..+++
T Consensus 26 l~~~~~LE~qL~~~~~~l~lLq~e~~~~e~~le~-------d~~~L~~Le~~~~~~~~e~~~~~~~~ 85 (160)
T PF13094_consen 26 LDRKRALERQLAANLHQLELLQEEIEKEEAALER-------DYEYLQELEKNAKALEREREEEEKKA 85 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 5566666667777777777777777664443332 33345557788888888999888885
No 402
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=27.79 E-value=2.6e+02 Score=38.02 Aligned_cols=8 Identities=50% Similarity=0.721 Sum_probs=3.5
Q ss_pred EcCCCccc
Q 001721 963 ALPGGLKD 970 (1020)
Q Consensus 963 ~~~~g~~~ 970 (1020)
.|.||.|-
T Consensus 1066 ~LSGGEKs 1073 (1163)
T COG1196 1066 LLSGGEKS 1073 (1163)
T ss_pred hcCCcHHH
Confidence 34444443
No 403
>PTZ00464 SNF-7-like protein; Provisional
Probab=27.79 E-value=3.7e+02 Score=29.08 Aligned_cols=31 Identities=13% Similarity=0.231 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 001721 798 IKLRAQVEELTRKSQLQEIELERTTRQLKEA 828 (1020)
Q Consensus 798 ~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea 828 (1020)
.+|+..++.|..|.+.++.|++++++++++.
T Consensus 21 ~~l~~r~~~l~kKi~~ld~E~~~ak~~~k~~ 51 (211)
T PTZ00464 21 KRIGGRSEVVDARINKIDAELMKLKEQIQRT 51 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566666666666666666666666666543
No 404
>PF00015 MCPsignal: Methyl-accepting chemotaxis protein (MCP) signalling domain; InterPro: IPR004089 Methyl-accepting chemotaxis proteins (MCPs) are a family of bacterial receptors that mediate chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behaviour []. Environmental diversity gives rise to diversity in bacterial signalling receptors, and consequently there are many genes encoding MCPs []. For example, there are four well-characterised MCPs found in Escherichia coli: Tar (taxis towards aspartate and maltose, away from nickel and cobalt), Tsr (taxis towards serine, away from leucine, indole and weak acids), Trg (taxis towards galactose and ribose) and Tap (taxis towards dipeptides). MCPs share similar topology and signalling mechanisms. MCPs either bind ligands directly or interact with ligand-binding proteins, transducing the signal to downstream signalling proteins in the cytoplasm. MCPs undergo two covalent modifications: deamidation and reversible methylation at a number of glutamate residues. Attractants increase the level of methylation, while repellents decrease it. The methyl groups are added by the methyl-transferase cheR and are removed by the methylesterase cheB. Most MCPs are homodimers that contain the following organisation: an N-terminal signal sequence that acts as a transmembrane domain in the mature protein; a poorly-conserved periplasmic receptor (ligand-binding) domain; a second transmembrane domain; and a highly-conserved C-terminal cytoplasmic domain that interacts with downstream signalling components. The C-terminal domain contains the glycosylated glutamate residues. This entry represents the signalling domain found in several methyl-accepting chemotaxis proteins. This domain is thought to transduce the signal to CheA since it is highly conserved in very diverse MCPs.; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0016020 membrane; PDB: 2CH7_A 3ZX6_B 1QU7_A 3G6B_B 3UR1_C 3G67_B.
Probab=27.74 E-value=5.3e+02 Score=26.75 Aligned_cols=39 Identities=23% Similarity=0.318 Sum_probs=21.9
Q ss_pred HhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhCC
Q 001721 823 RQLKEALAVAGEETAKCRAAKDVIKSLTAQLKDMAEMLP 861 (1020)
Q Consensus 823 ~~~~ea~~~a~eE~~k~~aake~iksl~~qlk~~~e~lp 861 (1020)
..+.+++.-..+-+.+..+.-+-+.....+|++++++|-
T Consensus 166 ~~i~~~i~~i~~~~~~~~~~~~~~~~~~~~l~~~a~~L~ 204 (213)
T PF00015_consen 166 EQINESIEEISEISEQISASSEEIAEAAEELSESAEELQ 204 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444455555555556666667777777663
No 405
>KOG0245 consensus Kinesin-like protein [Cytoskeleton]
Probab=27.69 E-value=1.8e+02 Score=38.05 Aligned_cols=56 Identities=29% Similarity=0.331 Sum_probs=36.9
Q ss_pred HHHHHHHHHH-----------------------HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 001721 794 SEEVIKLRAQ-----------------------VEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLT 850 (1020)
Q Consensus 794 ~qev~~l~~q-----------------------v~~L~~~~~~~~~ei~~~~~~~~ea~~~a~eE~~k~~aake~iksl~ 850 (1020)
.+||.|||+. ++.|.+++++.|.++.++.+.=+| |.+.|.++-++=+
T Consensus 367 reEv~rLksll~~~~~~~~~~~~~p~~~~~~~~~e~~~~~L~E~Ek~mael~etW~E----------Kl~~aEair~e~~ 436 (1221)
T KOG0245|consen 367 REEVARLKSLLRAQGLGDIAVEGSPSALLSQPEIEELRERLQETEKIMAELNETWEE----------KLREAEAIRMERE 436 (1221)
T ss_pred HHHHHHHHHHHhccccccccccCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHhHH
Confidence 7899999882 667777777777777665544444 4455555556666
Q ss_pred HHHHHHhhh
Q 001721 851 AQLKDMAEM 859 (1020)
Q Consensus 851 ~qlk~~~e~ 859 (1020)
+.|++|.-.
T Consensus 437 ~~L~emGva 445 (1221)
T KOG0245|consen 437 ALLAEMGVA 445 (1221)
T ss_pred HHHHhcCce
Confidence 667777533
No 406
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=27.69 E-value=3.3e+02 Score=31.25 Aligned_cols=21 Identities=14% Similarity=0.088 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHhHH
Q 001721 806 ELTRKSQLQEIELERTTRQLK 826 (1020)
Q Consensus 806 ~L~~~~~~~~~ei~~~~~~~~ 826 (1020)
.|+.+...++.+|+..++++.
T Consensus 208 ~lk~~l~~~~~ei~~~~~~l~ 228 (312)
T smart00787 208 RAKEKLKKLLQEIMIKVKKLE 228 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444443
No 407
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.68 E-value=1.6e+02 Score=35.84 Aligned_cols=59 Identities=31% Similarity=0.360 Sum_probs=0.0
Q ss_pred hhhhhhhh--------------HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhHHHHHHH
Q 001721 786 VVDDAKRT--------------SEEVIKLRAQVEELTR---KSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKS 848 (1020)
Q Consensus 786 ~~~~l~~~--------------~qev~~l~~qv~~L~~---~~~~~~~ei~~~~~~~~ea~~~a~eE~~k~~aake~iks 848 (1020)
+.|+||+. -+|-+-||-||.+|++ ..|-+..||.|+...++= +..+.||+..
T Consensus 154 lr~elKe~KfRE~RllseYSELEEENIsLQKqVs~LR~sQVEyEglkheikRleEe~el-ln~q~ee~~~---------- 222 (772)
T KOG0999|consen 154 LRDELKEYKFREARLLSEYSELEEENISLQKQVSNLRQSQVEYEGLKHEIKRLEEETEL-LNSQLEEAIR---------- 222 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHH-HHHHHHHHHH----------
Q ss_pred HHHHHHHHhhh
Q 001721 849 LTAQLKDMAEM 859 (1020)
Q Consensus 849 l~~qlk~~~e~ 859 (1020)
||++|||
T Consensus 223 ----Lk~IAek 229 (772)
T KOG0999|consen 223 ----LKEIAEK 229 (772)
T ss_pred ----HHHHHHH
No 408
>TIGR01461 greB transcription elongation factor GreB. The GreA and GreB transcription elongation factors enable to continuation of RNA transcription past template-encoded arresting sites. Among the Proteobacteria, distinct clades of GreA and GreB are found. GreB differs functionally in that it releases larger oligonucleotides. This model describes proteobacterial GreB.
Probab=27.68 E-value=1.2e+02 Score=31.12 Aligned_cols=47 Identities=15% Similarity=0.188 Sum_probs=33.8
Q ss_pred HHHHHHHHhHHHHHHHHHH--HHhhhhhHHHHHHHHHHHHHHHhhhCCCc
Q 001721 816 IELERTTRQLKEALAVAGE--ETAKCRAAKDVIKSLTAQLKDMAEMLPVG 863 (1020)
Q Consensus 816 ~ei~~~~~~~~ea~~~a~e--E~~k~~aake~iksl~~qlk~~~e~lp~~ 863 (1020)
.+.-+..+.+++|.+.- + |-+--.|||+-...|..+++++..+|---
T Consensus 23 ~~r~~~~~~i~~Ar~~G-DlsENaeY~aak~~~~~le~rI~~L~~~L~~A 71 (156)
T TIGR01461 23 EERPEVTQKVTWAASLG-DRSENADYQYGKKRLREIDRRVRFLTKRLENL 71 (156)
T ss_pred cccHHHHHHHHHHHHcC-CcchhhhhHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34455555566654433 4 66778899999999999999999888643
No 409
>PHA03011 hypothetical protein; Provisional
Probab=27.61 E-value=2.5e+02 Score=26.60 Aligned_cols=52 Identities=27% Similarity=0.275 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhh
Q 001721 794 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTAQLKDMAEM 859 (1020)
Q Consensus 794 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~eE~~k~~aake~iksl~~qlk~~~e~ 859 (1020)
.+-+..|++|-..|-++....+-|+.-+..-+|+ -.|-|-.|++|...+.|.
T Consensus 63 ~e~ldeL~~qYN~L~dEYn~i~Ne~k~~~~iIQd--------------n~d~I~~LraeIDkLK~n 114 (120)
T PHA03011 63 IEILDELIAQYNELLDEYNLIENEIKDLEIIIQD--------------NDDEIHFLRAEIDKLKEN 114 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------------chHHHHHHHHHHHHHHHH
Confidence 5566778888888888888888888887777777 556677888876666554
No 410
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=27.56 E-value=3.4e+02 Score=30.65 Aligned_cols=17 Identities=24% Similarity=0.528 Sum_probs=12.0
Q ss_pred CEEEEEEeCCcEEEeCCC
Q 001721 295 HHTCAVTLSGDMYTWGGS 312 (1020)
Q Consensus 295 ~ht~aLT~dG~VysWG~n 312 (1020)
.|++++ -+|+||++|..
T Consensus 116 ~~~~~~-~~~~iYv~GG~ 132 (323)
T TIGR03548 116 NGSACY-KDGTLYVGGGN 132 (323)
T ss_pred CceEEE-ECCEEEEEeCc
Confidence 455444 57999999965
No 411
>cd07612 BAR_Bin2 The Bin/Amphiphysin/Rvs (BAR) domain of Bridging integrator 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Bridging integrator 2 (Bin2) is a BAR domain containing protein that is mainly expressed in hematopoietic cells. It is upregulated during granulocyte differentiation and is thought to function primarily in this lineage. The BAR domain of Bin2 is closely related to the BAR domains of amphiphysins, which function primarily in endocytosis and other membrane remodeling events. Amphiphysins contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. Unlike amphiphysins, Bin2 does not appear to contain a C-terminal SH3 domain. Amphiphysin I proteins, enriched in the brain and nervous system, function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (
Probab=27.49 E-value=1.5e+02 Score=32.00 Aligned_cols=25 Identities=28% Similarity=0.441 Sum_probs=19.5
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 001721 828 ALAVAGEETAKCRAAKDVIKSLTAQLKD 855 (1020)
Q Consensus 828 a~~~a~eE~~k~~aake~iksl~~qlk~ 855 (1020)
.+.-|.+|-.. ||++...|.+||++
T Consensus 140 KL~kAe~el~~---Ak~~ye~lN~~L~~ 164 (211)
T cd07612 140 KIAKAEEEFNR---AQVVFEDINRELRE 164 (211)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 45556666555 99999999999996
No 412
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=27.44 E-value=1.1e+03 Score=27.96 Aligned_cols=26 Identities=15% Similarity=0.239 Sum_probs=19.1
Q ss_pred CcEEEEEec--CcEEEEEeCCCeEEEEe
Q 001721 508 NFVEEIACG--DYHVAVLTSRTEVYTWG 533 (1020)
Q Consensus 508 ~~I~~Ia~G--~~HslaLTsdG~VytWG 533 (1020)
..|.+|+.. ..+.++++.+|.+|..=
T Consensus 217 ~~i~~iavSpng~~iAl~t~~g~l~v~s 244 (410)
T PF04841_consen 217 GPIIKIAVSPNGKFIALFTDSGNLWVVS 244 (410)
T ss_pred CCeEEEEECCCCCEEEEEECCCCEEEEE
Confidence 457777766 45678889999998863
No 413
>cd01238 PH_Tec Tec pleckstrin homology (PH) domain. Tec pleckstrin homology (PH) domain. Proteins in the Tec family of cytoplasmic protein tyrosine kinases that includes Bruton's tyrosine kinase (BTK), BMX, IL2-inducible T-cell kinase (Itk) and Tec. These proteins generally have an N-terminal PH domain, followed by a Tek homology (TH) domain, a SH3 domain, a SH2 domain and a kinase domain. Tec PH domains tether these proteins to membranes following the activation of PI3K and its subsequent phosphorylation of phosphoinositides. The importance of PH domain membrane anchoring is confirmed by the discovery of a mutation of a critical arginine residue in the BTK PH domain, which causes X-linked agammaglobulinemia (XLA) in humans and a related disorder is mice. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few dis
Probab=27.33 E-value=38 Score=32.22 Aligned_cols=32 Identities=16% Similarity=0.441 Sum_probs=29.3
Q ss_pred ceEEEEecCcccceeecCcccchhhhhhhHhh
Q 001721 18 QSFSLIYNDRSLDLICKDKDEAEVWFTGLKAL 49 (1020)
Q Consensus 18 ~sfsl~~~~~~ld~ickd~~~~~~w~~~l~~~ 49 (1020)
..|.+|..+|.+=|.|.+.+|.+-|+..|+.+
T Consensus 75 ~~F~i~t~~r~~yl~A~s~~er~~WI~ai~~~ 106 (106)
T cd01238 75 YPFQVVHDEGTLYVFAPTEELRKRWIKALKQV 106 (106)
T ss_pred ccEEEEeCCCeEEEEcCCHHHHHHHHHHHHhC
Confidence 47999999999999999999999999998753
No 414
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=27.28 E-value=1.2e+02 Score=28.70 Aligned_cols=75 Identities=16% Similarity=0.218 Sum_probs=54.1
Q ss_pred hhhhhh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH-----HHhhhhhHHHHHHHHHHHHHHHhh
Q 001721 788 DDAKRT----SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGE-----ETAKCRAAKDVIKSLTAQLKDMAE 858 (1020)
Q Consensus 788 ~~l~~~----~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~e-----E~~k~~aake~iksl~~qlk~~~e 858 (1020)
.+||.- -+|-.-||.-+..|..+-+++..||++++-+..+.-..|.- ..++..+.|+-+|+.-.|..++.-
T Consensus 4 aeLR~qLqFvEEEa~LlRRkl~ele~eN~~l~~EL~kyk~~~g~~d~~~~~~~g~~~~~~~~~l~~eLk~a~~qi~~Ls~ 83 (96)
T PF11365_consen 4 AELRRQLQFVEEEAELLRRKLSELEDENKQLTEELNKYKSKYGDLDSLAKLSEGGSPSGREAELQEELKLAREQINELSG 83 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCCCccccHHHHHHHHHHHHHHHHHhh
Confidence 345554 67778888888999999999999999999887543222221 133445678889998888888887
Q ss_pred hCCC
Q 001721 859 MLPV 862 (1020)
Q Consensus 859 ~lp~ 862 (1020)
|+..
T Consensus 84 kv~e 87 (96)
T PF11365_consen 84 KVME 87 (96)
T ss_pred HHHH
Confidence 7654
No 415
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=27.19 E-value=2.8e+02 Score=32.36 Aligned_cols=21 Identities=19% Similarity=0.262 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHhhhCCC
Q 001721 842 AKDVIKSLTAQLKDMAEMLPV 862 (1020)
Q Consensus 842 ake~iksl~~qlk~~~e~lp~ 862 (1020)
+++-+..+..+|+++..+|-.
T Consensus 244 ~~~~l~~~~~~l~~~~~~l~~ 264 (423)
T TIGR01843 244 VLEELTEAQARLAELRERLNK 264 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344445555566666655543
No 416
>PRK10698 phage shock protein PspA; Provisional
Probab=27.18 E-value=2.1e+02 Score=31.14 Aligned_cols=45 Identities=13% Similarity=0.168 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH-----HHHHHHHHhh
Q 001721 794 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEA-----LAVAGEETAK 838 (1020)
Q Consensus 794 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea-----~~~a~eE~~k 838 (1020)
-+.+..|+.|+.......+.+...|++++.+++++ ..+|+..+++
T Consensus 98 ~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~ 147 (222)
T PRK10698 98 TDLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAAS 147 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555556666666665554 3445555544
No 417
>cd07599 BAR_Rvs167p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 167 and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 167 (Rvs167p) and Schizosaccharomyces pombe Hob1 (homolog of Bin1). S. cerevisiae Rvs167p plays a role in regulation of the actin cytoskeleton, endocytosis, and sporulation. It forms a heterodimer with another BAR domain protein Rvs161p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. Rvs167p also interacts with the GTPase activating protein (GAP) Gyp5p, which is involved in ER to Golgi vesicle trafficking. BAR domains fo
Probab=27.12 E-value=1.5e+02 Score=31.69 Aligned_cols=17 Identities=29% Similarity=0.344 Sum_probs=14.0
Q ss_pred hhhHHHHHHHHHHHHHH
Q 001721 839 CRAAKDVIKSLTAQLKD 855 (1020)
Q Consensus 839 ~~aake~iksl~~qlk~ 855 (1020)
...|++....|..+||+
T Consensus 158 l~~a~~~y~~lN~~Lk~ 174 (216)
T cd07599 158 LEEAKEEYEALNELLKS 174 (216)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45589999999999986
No 418
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=27.11 E-value=5.3e+02 Score=26.31 Aligned_cols=19 Identities=11% Similarity=0.216 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 001721 794 SEEVIKLRAQVEELTRKSQ 812 (1020)
Q Consensus 794 ~qev~~l~~qv~~L~~~~~ 812 (1020)
.+|..+++.++..+..+.+
T Consensus 48 l~~A~~~~~ea~~~~~e~e 66 (164)
T PRK14471 48 LASAEEARKEMQNLQADNE 66 (164)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4555555555555554433
No 419
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=27.10 E-value=1.7e+02 Score=24.98 Aligned_cols=33 Identities=24% Similarity=0.401 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 001721 794 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLK 826 (1020)
Q Consensus 794 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ 826 (1020)
.+.|..|..+|..|....+.+..+++.+++.+.
T Consensus 25 k~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~ 57 (64)
T PF00170_consen 25 KQYIEELEEKVEELESENEELKKELEQLKKEIQ 57 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555566666665555555555555555544443
No 420
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=26.98 E-value=4e+02 Score=22.70 Aligned_cols=47 Identities=11% Similarity=0.193 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHh
Q 001721 797 VIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTAQLKDMA 857 (1020)
Q Consensus 797 v~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~eE~~k~~aake~iksl~~qlk~~~ 857 (1020)
|..|.+++.+|+-....+..|++..++.+++ -+|-||-|-.=..-++
T Consensus 2 i~elEn~~~~~~~~i~tvk~en~~i~~~ve~--------------i~envk~ll~lYE~Vs 48 (55)
T PF05377_consen 2 IDELENELPRIESSINTVKKENEEISESVEK--------------IEENVKDLLSLYEVVS 48 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHH
Confidence 3456666777777777777777776666665 5666666654333333
No 421
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=26.94 E-value=1.6e+02 Score=25.28 Aligned_cols=25 Identities=32% Similarity=0.387 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHH
Q 001721 803 QVEELTRKSQLQEIELERTTRQLKE 827 (1020)
Q Consensus 803 qv~~L~~~~~~~~~ei~~~~~~~~e 827 (1020)
+++.|..+++.++.+.+.+++++..
T Consensus 27 ~~~~Le~~~~~L~~en~~L~~~~~~ 51 (64)
T PF00170_consen 27 YIEELEEKVEELESENEELKKELEQ 51 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666666655544
No 422
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=26.86 E-value=4.6e+02 Score=23.39 Aligned_cols=59 Identities=24% Similarity=0.380 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhC
Q 001721 799 KLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTAQLKDMAEML 860 (1020)
Q Consensus 799 ~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~eE~~k~~aake~iksl~~qlk~~~e~l 860 (1020)
+|.+=.+.|.+..+.+..+.+..=..++--...+..|.+ +-++=++.|+-|+..|.+.+
T Consensus 7 qLl~ale~Lq~~y~~q~~~Wq~sy~~Lq~~~~~t~~~~a---~L~~qv~~Ls~qv~~Ls~ql 65 (70)
T PF04899_consen 7 QLLSALEELQQSYEKQQQEWQSSYADLQHMFEQTSQENA---ALSEQVNNLSQQVQRLSEQL 65 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 455556777777777777777777777665555555554 57888999999999998764
No 423
>PHA01754 hypothetical protein
Probab=26.78 E-value=70 Score=27.27 Aligned_cols=25 Identities=24% Similarity=0.387 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHhhh------hhHHHHHHHHH
Q 001721 826 KEALAVAGEETAKC------RAAKDVIKSLT 850 (1020)
Q Consensus 826 ~ea~~~a~eE~~k~------~aake~iksl~ 850 (1020)
.=||++|.||.+-- +.|-||||.+.
T Consensus 24 DLamaLATee~EeVRkSevfqkA~EViKvvk 54 (69)
T PHA01754 24 DLTMALATEDKEEVRKSEVFQKALEVVKVVK 54 (69)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHHHHHHHHH
Confidence 45899999887643 46889998754
No 424
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=26.64 E-value=2.9e+02 Score=33.99 Aligned_cols=70 Identities=20% Similarity=0.252 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 001721 794 SEEVIKLRAQVEELTRKSQLQ-----------------EIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTAQLKDM 856 (1020)
Q Consensus 794 ~qev~~l~~qv~~L~~~~~~~-----------------~~ei~~~~~~~~ea~~~a~eE~~k~~aake~iksl~~qlk~~ 856 (1020)
-+|+.+|+.++..|+.+.+.| +++|.+.+.+++.=+.-+-++=-+..+-.+-|+.+-.+|+.+
T Consensus 307 EeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~vw~~~l~~~~~f~~le~~~~~~~~l 386 (581)
T KOG0995|consen 307 EEEIEKLQKENDELKKQIELQGISGEDVERMNLERNKLKRELNKIQSELDRLSKEVWELKLEIEDFFKELEKKFIDLNSL 386 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555666555555544433 233333333333322233333333233444455566688888
Q ss_pred hhhCCCc
Q 001721 857 AEMLPVG 863 (1020)
Q Consensus 857 ~e~lp~~ 863 (1020)
+.||--+
T Consensus 387 ~~~i~l~ 393 (581)
T KOG0995|consen 387 IRRIKLG 393 (581)
T ss_pred HHHHHHH
Confidence 8888776
No 425
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=26.59 E-value=3.1e+02 Score=28.77 Aligned_cols=52 Identities=21% Similarity=0.229 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH-HHhhhhhHHHHHHHHHHHHHH
Q 001721 804 VEELTRKSQLQEIELERTTRQLKEALAVAGE-ETAKCRAAKDVIKSLTAQLKD 855 (1020)
Q Consensus 804 v~~L~~~~~~~~~ei~~~~~~~~ea~~~a~e-E~~k~~aake~iksl~~qlk~ 855 (1020)
+-.|-++...++.+++..+++.+++..-+.+ +.++-+..++-|+.|..||++
T Consensus 120 ~~~li~~l~~~~~~~~~~~kq~~~~~~~~~~~~~~~~~~~~~ei~~lk~el~~ 172 (192)
T PF05529_consen 120 VHSLIKELIKLEEKLEALKKQAESASEAAEKLLKEENKKLSEEIEKLKKELEK 172 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 4466667777777777777777766544432 233344466677777776665
No 426
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=26.56 E-value=2.1e+02 Score=30.83 Aligned_cols=45 Identities=13% Similarity=0.143 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH-----HHHHHHHHhh
Q 001721 794 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEA-----LAVAGEETAK 838 (1020)
Q Consensus 794 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea-----~~~a~eE~~k 838 (1020)
.+.+..|+.|+..++...+.+...|++++++++++ +.+|+..+++
T Consensus 98 ~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~A~ 147 (219)
T TIGR02977 98 QELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQAAS 147 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555555555543 3444455554
No 427
>PF03885 DUF327: Protein of unknown function (DUF327); InterPro: IPR005585 The proteins in this family are around 140-170 residues in length. The proteins contain many conserved residues, with the most conserved motifs found in the central and C-terminal region. The function of these proteins is unknown. ; PDB: 2P61_A 2QUP_A.
Probab=26.39 E-value=3.2e+02 Score=27.67 Aligned_cols=84 Identities=14% Similarity=0.205 Sum_probs=55.1
Q ss_pred CCCCcchhhhhhhh-HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhHHHHHHHHHHHHhhh-----------hhHHHH
Q 001721 780 LASPKIVVDDAKRT-SEEVIKLRAQVEELTRKSQLQE--IELERTTRQLKEALAVAGEETAKC-----------RAAKDV 845 (1020)
Q Consensus 780 ~~~~~~~~~~l~~~-~qev~~l~~qv~~L~~~~~~~~--~ei~~~~~~~~ea~~~a~eE~~k~-----------~aake~ 845 (1020)
.+|++.+.+.-++. .+|+.+|-.++...-+++..-- .+|.++++-|++=+..|...+=+. .---.+
T Consensus 27 ~~F~~~l~~~~~~~~~e~L~~Ll~~I~~~G~~L~~~~t~~~l~~YK~~Vk~Fl~~~v~~~~~l~~~~~~~~~g~~k~y~i 106 (147)
T PF03885_consen 27 SSFSDVLEQQEEEKSEEELQELLDEIDEQGERLAESPTLENLKRYKELVKQFLKEVVKNGYKLEEESSWDRRGRQKVYTI 106 (147)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHT-----H-HHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHheeehcccCCccCCCceeee
Confidence 34777764444333 6788888887777766665443 788889988887666555533222 234467
Q ss_pred HHHHHHHHHHHhhhCCCc
Q 001721 846 IKSLTAQLKDMAEMLPVG 863 (1020)
Q Consensus 846 iksl~~qlk~~~e~lp~~ 863 (1020)
|+-+...|.+|++.|-.+
T Consensus 107 V~~ID~kL~~L~~~ll~~ 124 (147)
T PF03885_consen 107 VKVIDEKLDELTDELLSE 124 (147)
T ss_dssp HHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHc
Confidence 889999999999876544
No 428
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=26.31 E-value=5.8e+02 Score=31.55 Aligned_cols=21 Identities=24% Similarity=0.173 Sum_probs=15.1
Q ss_pred CCCCceeeeecceeEEEEEEc
Q 001721 944 AQGDEWVEQDETGVYITLVAL 964 (1020)
Q Consensus 944 ~~~~~~~~~~e~gv~~t~~~~ 964 (1020)
.+...-.|-|+-|-||++...
T Consensus 436 ~g~v~i~e~d~~gk~i~~~n~ 456 (546)
T KOG0977|consen 436 KGNVAIHECDPEGKFIRLNNK 456 (546)
T ss_pred CCCcceeecccccceeeeccc
Confidence 445566778888899988743
No 429
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=26.09 E-value=2.7e+02 Score=35.17 Aligned_cols=36 Identities=22% Similarity=0.256 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 001721 794 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEAL 829 (1020)
Q Consensus 794 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~ 829 (1020)
.+|+..++.+.+.++++.+.++.++++++++++++-
T Consensus 215 e~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~ 250 (650)
T TIGR03185 215 EAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLE 250 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666666666666666666666666666665443
No 430
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=26.05 E-value=1.2e+03 Score=28.05 Aligned_cols=98 Identities=18% Similarity=0.258 Sum_probs=51.3
Q ss_pred ccccccCCCCcccccCCCCcEEEEcCCCCCCccCCCCCcCCccccccccccceEEecccCCCCEEEEEecCcEEEEEE--
Q 001721 172 SAVSSSSQGSGHDDGDSLGDVFIWGECTGDGILGGGIHRSGSYAGVKMDSFVPKAVESAVVLDVQNIACGGRHAALVT-- 249 (1020)
Q Consensus 172 s~~~~~S~G~~~~~lds~G~Vy~WG~n~~~GqLG~g~~~~~~~~~~~~~~~~P~~v~~~~~~~I~~Ia~G~~hs~~Lt-- 249 (1020)
+++...-.|....+-+..|++|.|=-+. |.|=.--. .-...|..+....+-.+++|
T Consensus 85 ~al~s~n~G~~l~ag~i~g~lYlWelss--G~LL~v~~--------------------aHYQ~ITcL~fs~dgs~iiTgs 142 (476)
T KOG0646|consen 85 HALASSNLGYFLLAGTISGNLYLWELSS--GILLNVLS--------------------AHYQSITCLKFSDDGSHIITGS 142 (476)
T ss_pred eeeecCCCceEEEeecccCcEEEEEecc--ccHHHHHH--------------------hhccceeEEEEeCCCcEEEecC
Confidence 3444445565555567899999998876 33221100 01123444444444444444
Q ss_pred cCCeEEEEeCCCCCccCCCCCCCCCcceEeeccCC--CcEEEEEecCCE
Q 001721 250 KQGEVFSWGEELGGRLGHGVDSDVSHPKLIDALKN--INVELVACGEHH 296 (1020)
Q Consensus 250 ~dG~Vy~wG~N~~GqLG~g~~~~~~~P~~V~~l~~--~~I~~VacG~~h 296 (1020)
+||.|++|=--.-- ...+...|.++..+.+ ..|.++.+|..-
T Consensus 143 kDg~V~vW~l~~lv-----~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg 186 (476)
T KOG0646|consen 143 KDGAVLVWLLTDLV-----SADNDHSVKPLHIFSDHTLSITDLQIGSGG 186 (476)
T ss_pred CCccEEEEEEEeec-----ccccCCCccceeeeccCcceeEEEEecCCC
Confidence 78999999632210 1111224445544443 467777776553
No 431
>PF10073 DUF2312: Uncharacterized protein conserved in bacteria (DUF2312); InterPro: IPR018753 This entry is represented by Azospirillum phage Cd, Gp10. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family of hypothetical bacterial proteins have no known function.
Probab=26.04 E-value=2.2e+02 Score=25.64 Aligned_cols=48 Identities=17% Similarity=0.235 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhHHHHHHH
Q 001721 801 RAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKS 848 (1020)
Q Consensus 801 ~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~eE~~k~~aake~iks 848 (1020)
..|+.+.-++.|.++.|.......+++..+-|.-+==--|+.+.||+-
T Consensus 3 ~~~Lr~~ieRiErLEeEk~~i~~dikdVyaEAK~~GfD~K~lr~ii~l 50 (74)
T PF10073_consen 3 AEQLRQFIERIERLEEEKKAISDDIKDVYAEAKGNGFDTKALRQIIRL 50 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 346777888899999999999999999998887777777888888874
No 432
>PF07464 ApoLp-III: Apolipophorin-III precursor (apoLp-III); InterPro: IPR010009 This family consists of several insect apolipoprotein-III sequences. Exchangeable apolipoproteins constitute a functionally important family of proteins that play critical roles in lipid transport and lipoprotein metabolism. Apolipophorin III (apoLp-III) is a prototypical exchangeable apolipoprotein found in many insect species that functions in transport of diacylglycerol (DAG) from the fat body lipid storage depot to flight muscles in the adult life stage [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0005576 extracellular region; PDB: 1EQ1_A.
Probab=26.04 E-value=1.1e+02 Score=31.58 Aligned_cols=53 Identities=25% Similarity=0.374 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhCCC
Q 001721 804 VEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTAQLKDMAEMLPV 862 (1020)
Q Consensus 804 v~~L~~~~~~~~~ei~~~~~~~~ea~~~a~eE~~k~~aake~iksl~~qlk~~~e~lp~ 862 (1020)
+++|+.+.+.....|+....+++|++.-+.+ -++|+++.+...|.+.+++|--
T Consensus 29 ~~aik~~sd~~~~~l~~~~~~l~eeik~~n~------~~~e~l~~~~~kl~et~~~L~k 81 (155)
T PF07464_consen 29 VKAIKEQSDSVAQQLQNVSSSLQEEIKDANP------EAEEALKQLKTKLEETAEKLRK 81 (155)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHTT-SS------THHHHHHHHHHHHHHHHHGGGG
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHhcCh------hHHHHHHHHHHHHHHHHHHHHh
Confidence 4688888888888899999999886654433 3678899999999999998874
No 433
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=26.00 E-value=2e+02 Score=27.50 Aligned_cols=11 Identities=55% Similarity=0.573 Sum_probs=4.7
Q ss_pred HHHHHHHHHHH
Q 001721 795 EEVIKLRAQVE 805 (1020)
Q Consensus 795 qev~~l~~qv~ 805 (1020)
+|-.|||+|+.
T Consensus 5 ~eYsKLraQ~~ 15 (102)
T PF10205_consen 5 QEYSKLRAQNQ 15 (102)
T ss_pred HHHHHHHHHHH
Confidence 34444444443
No 434
>COG5490 Uncharacterized conserved protein [Function unknown]
Probab=25.91 E-value=3.8e+02 Score=27.20 Aligned_cols=40 Identities=28% Similarity=0.403 Sum_probs=25.3
Q ss_pred HHHhHHHHHHHHHH--HHhhhhhHHHHHHHHHHHHHHHhhhCC
Q 001721 821 TTRQLKEALAVAGE--ETAKCRAAKDVIKSLTAQLKDMAEMLP 861 (1020)
Q Consensus 821 ~~~~~~ea~~~a~e--E~~k~~aake~iksl~~qlk~~~e~lp 861 (1020)
.+|.++-|+.-|.| |.+ +|+++|+||-|.+..++-.|++-
T Consensus 114 ark~~Eaaveqa~~~qe~a-rks~~es~kplk~r~e~Ame~ik 155 (158)
T COG5490 114 ARKSFEAAVEQAKEVQELA-RKSAEESIKPLKARIEKAMEEIK 155 (158)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHhhHHHHHHHHHHHHHHh
Confidence 34444444444433 222 58899999999998887666553
No 435
>cd07588 BAR_Amphiphysin The Bin/Amphiphysin/Rvs (BAR) domain of Amphiphysins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Amphiphysins function primarily in endocytosis and other membrane remodeling events. They contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. This subfamily is composed of different isoforms of amphiphysin and Bridging integrator 2 (Bin2). Amphiphysin I proteins, enriched in the brain and nervous system, contain domains that bind clathrin, Adaptor Protein complex 2 (AP2), dynamin and synaptojanin. They function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (Bin1), are localized in many different tissues and may function in intracellular vesicle trafficking. In skeletal muscle, Bin1 plays a role in the organization and maintenance of th
Probab=25.87 E-value=1.5e+02 Score=32.01 Aligned_cols=22 Identities=36% Similarity=0.451 Sum_probs=16.4
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHH
Q 001721 831 VAGEETAKCRAAKDVIKSLTAQLKD 855 (1020)
Q Consensus 831 ~a~eE~~k~~aake~iksl~~qlk~ 855 (1020)
-|.+|-. .||++-..|.+||++
T Consensus 143 kae~el~---~Ak~~Ye~lN~~L~~ 164 (211)
T cd07588 143 KAEEELQ---QAKKVYEELNTELHE 164 (211)
T ss_pred HHHHHHH---HHHHHHHHHHHHHHH
Confidence 3444444 499999999999986
No 436
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=25.84 E-value=3.1e+02 Score=35.32 Aligned_cols=63 Identities=32% Similarity=0.276 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 001721 794 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTAQLKDM 856 (1020)
Q Consensus 794 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~eE~~k~~aake~iksl~~qlk~~ 856 (1020)
.+|+.++.++.+.|.-....-+.+|+.++.+++|+-...++=-++...+++-=..+..||+.|
T Consensus 595 ~eelE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~ 657 (769)
T PF05911_consen 595 EEELEKLESEKEELEMELASCQDQLESLKNQLKESEQKLEELQSELESAKESNSLAETQLKAM 657 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444544444444444444444444444444444444444444444444333333344433
No 437
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=25.83 E-value=1.3e+02 Score=28.21 Aligned_cols=33 Identities=21% Similarity=0.263 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 001721 794 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLK 826 (1020)
Q Consensus 794 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ 826 (1020)
..++.+|+++++.|+.+.+.++.+++.++++++
T Consensus 69 ~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~ 101 (104)
T PF13600_consen 69 SPELKELEEELEALEDELAALQDEIQALEAQIA 101 (104)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667888888888888888888888877776654
No 438
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=25.50 E-value=5.1e+02 Score=26.37 Aligned_cols=43 Identities=16% Similarity=0.097 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhh
Q 001721 796 EVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAK 838 (1020)
Q Consensus 796 ev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~eE~~k 838 (1020)
-+..|+++++....-.+.-...|+.++++++.....-++|..|
T Consensus 42 ~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~ 84 (160)
T PF13094_consen 42 QLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEKK 84 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445555665555555555566666666665555555555444
No 439
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=25.49 E-value=1.7e+02 Score=36.08 Aligned_cols=24 Identities=29% Similarity=0.142 Sum_probs=14.9
Q ss_pred EEEEEecCcEE-EEEeCCCeEEEEe
Q 001721 510 VEEIACGDYHV-AVLTSRTEVYTWG 533 (1020)
Q Consensus 510 I~~Ia~G~~Hs-laLTsdG~VytWG 533 (1020)
|+.|--|-... ++|+-||+|.---
T Consensus 246 IVGIDPGiTtgiAvldldGevl~~~ 270 (652)
T COG2433 246 IVGIDPGITTGIAVLDLDGEVLDLE 270 (652)
T ss_pred EEEeCCCceeeEEEEecCCcEEeee
Confidence 66676776654 4456777766543
No 440
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=25.41 E-value=2.8e+02 Score=28.69 Aligned_cols=33 Identities=30% Similarity=0.426 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 001721 794 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLK 826 (1020)
Q Consensus 794 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ 826 (1020)
..|..+|+.|+..|.++.+.++.|++++.+++.
T Consensus 103 ~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~ 135 (161)
T TIGR02894 103 QKENERLKNQNESLQKRNEELEKELEKLRQRLS 135 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777777888888888888888877777664
No 441
>KOG4514 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.39 E-value=8.2e+02 Score=25.80 Aligned_cols=27 Identities=22% Similarity=0.390 Sum_probs=15.3
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHh
Q 001721 828 ALAVAGEETAKCRAAKDVIKSLTAQLKDMA 857 (1020)
Q Consensus 828 a~~~a~eE~~k~~aake~iksl~~qlk~~~ 857 (1020)
+++--.||..| +..-+.-|.-|+|+|-
T Consensus 186 ~lLAk~EEi~k---sm~pv~~La~qir~ir 212 (222)
T KOG4514|consen 186 QLLAKAEEITK---SMKPVEQLAQQIRQIR 212 (222)
T ss_pred HHHHHHHHHHH---HHhhHHHHHHHHHHHH
Confidence 33334466665 4444556667777764
No 442
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=25.32 E-value=4.6e+02 Score=28.16 Aligned_cols=35 Identities=34% Similarity=0.355 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhHHHH
Q 001721 794 SEEVIKLRAQVEELT-------RKSQLQEIELERTTRQLKEA 828 (1020)
Q Consensus 794 ~qev~~l~~qv~~L~-------~~~~~~~~ei~~~~~~~~ea 828 (1020)
.+++.+++++.+.|+ .|.+.++.||+.+++++++|
T Consensus 121 ~~~L~k~~~~~~Kl~~~~~s~~~K~~~~~~ei~~~e~~~~~a 162 (216)
T cd07627 121 ESELSKKKAQLEKLKRQGKTQQEKLNSLLSELEEAERRASEL 162 (216)
T ss_pred HHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHH
Confidence 667777777777763 46666666666665555543
No 443
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=25.29 E-value=6.4e+02 Score=24.91 Aligned_cols=21 Identities=14% Similarity=0.172 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHhHH
Q 001721 806 ELTRKSQLQEIELERTTRQLK 826 (1020)
Q Consensus 806 ~L~~~~~~~~~ei~~~~~~~~ 826 (1020)
.|+.+.+....+|..++.+++
T Consensus 63 ~lr~e~~~~~~~~~~l~~~~~ 83 (132)
T PF07926_consen 63 QLREELQELQQEINELKAEAE 83 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444433333333
No 444
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=25.23 E-value=1.2e+03 Score=27.65 Aligned_cols=69 Identities=13% Similarity=0.161 Sum_probs=40.3
Q ss_pred CEEEEEe-cCcEEEEEEcCCeEEEEeCCCCCccCCCCCCCCCcceEee--ccCCCcEEEEEecCCEEEEEEeCCcEEEeC
Q 001721 234 DVQNIAC-GGRHAALVTKQGEVFSWGEELGGRLGHGVDSDVSHPKLID--ALKNINVELVACGEHHTCAVTLSGDMYTWG 310 (1020)
Q Consensus 234 ~I~~Ia~-G~~hs~~Lt~dG~Vy~wG~N~~GqLG~g~~~~~~~P~~V~--~l~~~~I~~VacG~~ht~aLT~dG~VysWG 310 (1020)
+|+.+.- ...+-++|+++|.|+.+- -.|.. ....+..+. .....+|-.+..+.+-.++||.++++|.-=
T Consensus 82 ~iv~~~wt~~e~LvvV~~dG~v~vy~--~~G~~------~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt~~~~~~~v~ 153 (410)
T PF04841_consen 82 RIVGMGWTDDEELVVVQSDGTVRVYD--LFGEF------QFSLGEEIEEEKVLECRIFAIWFYKNGIVVLTGNNRFYVVN 153 (410)
T ss_pred CEEEEEECCCCeEEEEEcCCEEEEEe--CCCce------eechhhhccccCcccccccccccCCCCEEEECCCCeEEEEe
Confidence 5555543 356788899999988873 33332 111122221 111223444456666688999999999873
No 445
>PRK00295 hypothetical protein; Provisional
Probab=25.22 E-value=3e+02 Score=24.19 Aligned_cols=46 Identities=22% Similarity=0.291 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhCCC
Q 001721 803 QVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTAQLKDMAEMLPV 862 (1020)
Q Consensus 803 qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~eE~~k~~aake~iksl~~qlk~~~e~lp~ 862 (1020)
.+..|+.+.-.||.-|+.+.+.|-+ --..|..|..||+.|.+||-.
T Consensus 6 Ri~~LE~kla~qE~tie~Ln~~v~~--------------Qq~~I~~L~~ql~~L~~rl~~ 51 (68)
T PRK00295 6 RVTELESRQAFQDDTIQALNDVLVE--------------QQRVIERLQLQMAALIKRQEE 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHH
Confidence 3555555555555555554444333 222356677777777777655
No 446
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=25.22 E-value=3.8e+02 Score=27.25 Aligned_cols=40 Identities=18% Similarity=0.277 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 001721 794 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEET 836 (1020)
Q Consensus 794 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~eE~ 836 (1020)
.+|..+++.+.+.+..+ .+.+|+..+++.++-+.-|.+|+
T Consensus 42 l~~Ae~~~~eA~~~~~~---~e~~L~~A~~ea~~ii~~A~~~a 81 (159)
T PRK09173 42 LAEARRLREEAQQLLAE---YQRKRKEAEKEAADIVAAAEREA 81 (159)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555444 33444444444444444444433
No 447
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=25.08 E-value=5.4e+02 Score=30.58 Aligned_cols=32 Identities=19% Similarity=0.196 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhh
Q 001721 807 LTRKSQLQEIELERTTRQLKEALAVAGEETAK 838 (1020)
Q Consensus 807 L~~~~~~~~~ei~~~~~~~~ea~~~a~eE~~k 838 (1020)
+.+.+++---..+++..++.|.+.+=-.|..-
T Consensus 249 ~~~~LqEEr~R~erLEeqlNd~~elHq~Ei~~ 280 (395)
T PF10267_consen 249 ILEALQEERYRYERLEEQLNDLTELHQNEIYN 280 (395)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344445555555655555555444
No 448
>cd01246 PH_oxysterol_bp Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding proteins are a multigene family that is conserved in yeast, flies, worms, mammals and plants. They all contain a C-terminal oxysterol binding domain, and most contain an N-terminal PH domain. OSBP PH domains bind to membrane phosphoinositides and thus likely play an important role in intracellular targeting. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=24.99 E-value=51 Score=29.44 Aligned_cols=32 Identities=19% Similarity=0.442 Sum_probs=28.7
Q ss_pred cceEEEEecC-cccceeecCcccchhhhhhhHh
Q 001721 17 YQSFSLIYND-RSLDLICKDKDEAEVWFTGLKA 48 (1020)
Q Consensus 17 ~~sfsl~~~~-~~ld~ickd~~~~~~w~~~l~~ 48 (1020)
-..|++...+ +.+=|-|++.+|++-|+..|+.
T Consensus 58 ~~~F~i~~~~~~~~~~~a~s~~e~~~Wi~al~~ 90 (91)
T cd01246 58 DKCFTIDTGGDKTLHLRANSEEERQRWVDALEL 90 (91)
T ss_pred CcEEEEEcCCCCEEEEECCCHHHHHHHHHHHHh
Confidence 4699999866 9999999999999999999875
No 449
>PRK14149 heat shock protein GrpE; Provisional
Probab=24.99 E-value=3.6e+02 Score=28.76 Aligned_cols=56 Identities=16% Similarity=0.169 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 001721 794 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLT 850 (1020)
Q Consensus 794 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~eE~~k~~aake~iksl~ 850 (1020)
.+.+..|++|+..|+.+.-..-+|++-++|..+.-...+.+-+. -+.++++|-.|.
T Consensus 42 ~~~~~~l~~e~~elkd~~lR~~AefEN~rKR~~kE~e~~~~~a~-~~~~~~LLpVlD 97 (191)
T PRK14149 42 GEIKEDFELKYKEMHEKYLRVHADFENVKKRLERDKSMALEYAY-EKIALDLLPVID 97 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhHHh
Confidence 66777888888888888888888888888777654433333222 234444444333
No 450
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=24.97 E-value=2.7e+02 Score=25.18 Aligned_cols=19 Identities=32% Similarity=0.284 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 001721 794 SEEVIKLRAQVEELTRKSQ 812 (1020)
Q Consensus 794 ~qev~~l~~qv~~L~~~~~ 812 (1020)
.+|+.+|...|.+|+.++.
T Consensus 18 ~eEI~rLn~lv~sLR~KLi 36 (76)
T PF11544_consen 18 QEEIDRLNILVGSLRGKLI 36 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5566666666665555543
No 451
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=24.93 E-value=4.4e+02 Score=26.40 Aligned_cols=42 Identities=24% Similarity=0.260 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 001721 795 EEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEET 836 (1020)
Q Consensus 795 qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~eE~ 836 (1020)
.++..+|+|+..+-..+..+..+.+...++.+++..--.-++
T Consensus 55 ~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~l~~~~s~~~ 96 (150)
T PF07200_consen 55 PELEELRSQLQELYEELKELESEYQEKEQQQDELSSNYSPDA 96 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHH
Confidence 455555555555555555555555555555555443333333
No 452
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=24.93 E-value=4.8e+02 Score=31.18 Aligned_cols=13 Identities=15% Similarity=0.284 Sum_probs=10.4
Q ss_pred eeeecceeEEEEE
Q 001721 950 VEQDETGVYITLV 962 (1020)
Q Consensus 950 ~~~~e~gv~~t~~ 962 (1020)
.+|.+|..|+-|+
T Consensus 394 gg~~~p~LYfEiR 406 (420)
T COG4942 394 GGQGRPALYFEIR 406 (420)
T ss_pred CCCCCcchhhhhh
Confidence 5788999998764
No 453
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=24.92 E-value=3.5e+02 Score=29.96 Aligned_cols=64 Identities=20% Similarity=0.252 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhh
Q 001721 795 EEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTAQLKDMAE 858 (1020)
Q Consensus 795 qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~eE~~k~~aake~iksl~~qlk~~~e 858 (1020)
+++..|..+++.|.+|...-....+.....++++..-|.+=..+.+....-|+.|..|+..+.+
T Consensus 52 ~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~~~i~~l~~~~~~l~~ 115 (264)
T PF06008_consen 52 KELESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQDNIQELIEQVESLNE 115 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 4466666666666666666666666666666666666666666667777777777777777776
No 454
>PF06216 RTBV_P46: Rice tungro bacilliform virus P46 protein; InterPro: IPR009347 This family consists of several Rice tungro bacilliform virus P46 proteins. The function of this family is unknown.
Probab=24.91 E-value=1.5e+02 Score=32.29 Aligned_cols=33 Identities=24% Similarity=0.320 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 001721 794 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLK 826 (1020)
Q Consensus 794 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ 826 (1020)
.-|-++|+.||+.|+++.+.|.+.|..-+.+++
T Consensus 77 ~~e~~~l~~qvs~l~~~~~~~r~~~~~~~~~~e 109 (389)
T PF06216_consen 77 SNEWISLNDQVSHLQHQNSEQRQQIREMREIIE 109 (389)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788888888888888888888877766664
No 455
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=24.86 E-value=1.3e+03 Score=28.14 Aligned_cols=30 Identities=27% Similarity=0.355 Sum_probs=19.9
Q ss_pred EEEEEecCcEEEEEeCCCeEEEEeCCCCCC
Q 001721 510 VEEIACGDYHVAVLTSRTEVYTWGKGANGR 539 (1020)
Q Consensus 510 I~~Ia~G~~HslaLTsdG~VytWG~n~~GQ 539 (1020)
++..+--....++=+.|+.+|.+.-..+|.
T Consensus 452 ~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~ 481 (626)
T KOG2106|consen 452 VVRYSPDGAFLAVGSHDNHIYIYRVSANGR 481 (626)
T ss_pred EEEEcCCCCEEEEecCCCeEEEEEECCCCc
Confidence 444444445555567888899998777665
No 456
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=24.86 E-value=3e+02 Score=25.87 Aligned_cols=23 Identities=9% Similarity=0.040 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 001721 795 EEVIKLRAQVEELTRKSQLQEIE 817 (1020)
Q Consensus 795 qev~~l~~qv~~L~~~~~~~~~e 817 (1020)
.+..++..-+..|+..++.++.+
T Consensus 35 ~kY~~~~~~~~~l~~~~~~l~~k 57 (99)
T PF10046_consen 35 LKYKKMKDIAAGLEKNLEDLNQK 57 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444433
No 457
>PRK02793 phi X174 lysis protein; Provisional
Probab=24.83 E-value=3.1e+02 Score=24.44 Aligned_cols=47 Identities=23% Similarity=0.326 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhCCC
Q 001721 802 AQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTAQLKDMAEMLPV 862 (1020)
Q Consensus 802 ~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~eE~~k~~aake~iksl~~qlk~~~e~lp~ 862 (1020)
+.+..|+.+.-.|+.-|+.+.+-|-+ --..|..|+.||+.|.+||=.
T Consensus 8 ~Ri~~LE~~lafQe~tIe~Ln~~v~~--------------Qq~~I~~L~~~l~~L~~rl~~ 54 (72)
T PRK02793 8 ARLAELESRLAFQEITIEELNVTVTA--------------HEMEMAKLRDHLRLLTEKLKA 54 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHh
Confidence 44555556666666555555544433 233467788899999888744
No 458
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=24.77 E-value=2.4e+02 Score=33.36 Aligned_cols=71 Identities=24% Similarity=0.334 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhHHHHHHHHHHHHh----hhhh-------HHHHHHHHHHHHHHHhh
Q 001721 794 SEEVIKLRAQVEELTRKSQLQEI----ELERTTRQLKEALAVAGEETA----KCRA-------AKDVIKSLTAQLKDMAE 858 (1020)
Q Consensus 794 ~qev~~l~~qv~~L~~~~~~~~~----ei~~~~~~~~ea~~~a~eE~~----k~~a-------ake~iksl~~qlk~~~e 858 (1020)
.||+.+|.+-+..|+++...+|. .|..=++.-+|+......|++ +|.+ ..+-++++++.||-+++
T Consensus 249 kqEnlqLvhR~h~LEEq~reqElraeE~l~Ee~rrhrEil~k~eReasle~Enlqmr~qqleeentelRs~~arlksl~d 328 (502)
T KOG0982|consen 249 KQENLQLVHRYHMLEEQRREQELRAEESLSEEERRHREILIKKEREASLEKENLQMRDQQLEEENTELRSLIARLKSLAD 328 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777777767666666655542 222222333333333333332 2221 12346788888888888
Q ss_pred hCCCcc
Q 001721 859 MLPVGA 864 (1020)
Q Consensus 859 ~lp~~~ 864 (1020)
||-.+.
T Consensus 329 klaee~ 334 (502)
T KOG0982|consen 329 KLAEED 334 (502)
T ss_pred HHhhhh
Confidence 888775
No 459
>PF01496 V_ATPase_I: V-type ATPase 116kDa subunit family ; InterPro: IPR002490 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents the 116kDa subunit (or subunit a) and subunit I found in the V0 or A0 complex of V- or A-ATPases, respectively. The 116kDa subunit is a transmembrane glycoprotein required for the assembly and proton transport activity of the ATPase complex. Several isoforms of the 116kDa subunit exist, providing a potential role in the differential targeting and regulation of the V-ATPase for specific organelles []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015991 ATP hydrolysis coupled proton transport, 0033177 proton-transporting two-sector ATPase complex, proton-transporting domain; PDB: 2RPW_X 2NVJ_A 2JTW_A 3RRK_A.
Probab=24.74 E-value=3.4e+02 Score=34.99 Aligned_cols=54 Identities=22% Similarity=0.262 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhHHHHHH
Q 001721 794 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIK 847 (1020)
Q Consensus 794 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~eE~~k~~aake~ik 847 (1020)
.+.+.+++++++.|+++.+..+.++++..++..+.+....+...|-|+.-+++.
T Consensus 228 ~e~~~~l~~~i~~l~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~~~~~~~~~~ 281 (759)
T PF01496_consen 228 EEAIKELEEEIEELEKELEELEEELKKLLEKYAEELEAWYEYLRKEKEIYEALN 281 (759)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777888888888888888888887766666655555555555444444433
No 460
>KOG3990 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.71 E-value=1.5e+02 Score=32.47 Aligned_cols=34 Identities=12% Similarity=0.253 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 001721 794 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKE 827 (1020)
Q Consensus 794 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~e 827 (1020)
.=-+.+|..+|..|+..+.+.|.+|-...+||-|
T Consensus 224 ~V~i~~lkeeia~Lkk~L~qkdq~ileKdkqisn 257 (305)
T KOG3990|consen 224 MVKIQKLKEEIARLKKLLHQKDQLILEKDKQISN 257 (305)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHhhhhhhhc
Confidence 3346788889999999999999999988888877
No 461
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=24.70 E-value=1.1e+02 Score=24.82 Aligned_cols=22 Identities=9% Similarity=0.240 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhH
Q 001721 804 VEELTRKSQLQEIELERTTRQL 825 (1020)
Q Consensus 804 v~~L~~~~~~~~~ei~~~~~~~ 825 (1020)
|++|+||.+.++.+|+.++.-+
T Consensus 1 i~aLrqQv~aL~~qv~~Lq~~f 22 (46)
T PF09006_consen 1 INALRQQVEALQGQVQRLQAAF 22 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999998876543
No 462
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=24.69 E-value=2.4e+02 Score=25.68 Aligned_cols=16 Identities=25% Similarity=0.545 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 001721 796 EVIKLRAQVEELTRKS 811 (1020)
Q Consensus 796 ev~~l~~qv~~L~~~~ 811 (1020)
||..++..+..++.++
T Consensus 8 ~v~~i~~~i~~i~~~~ 23 (103)
T PF00804_consen 8 EVQEIREDIDKIKEKL 23 (103)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444333
No 463
>PRK14127 cell division protein GpsB; Provisional
Probab=24.69 E-value=1.6e+02 Score=28.57 Aligned_cols=46 Identities=15% Similarity=0.200 Sum_probs=31.2
Q ss_pred CCcchhhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 001721 782 SPKIVVDDAKRT-SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKE 827 (1020)
Q Consensus 782 ~~~~~~~~l~~~-~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~e 827 (1020)
....++|+.=.. .+++..|..++..|+++.+.++.+|..++.++..
T Consensus 23 Yd~~EVD~FLd~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~~ 69 (109)
T PRK14127 23 YDQDEVDKFLDDVIKDYEAFQKEIEELQQENARLKAQVDELTKQVSV 69 (109)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 344455553333 7777777778888888777777777777777664
No 464
>PRK09343 prefoldin subunit beta; Provisional
Probab=24.68 E-value=6.7e+02 Score=24.53 Aligned_cols=34 Identities=24% Similarity=0.417 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 001721 794 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKE 827 (1020)
Q Consensus 794 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~e 827 (1020)
..+..+++.++..+..+.+.++.++.+++.-++|
T Consensus 13 ~~~~q~lq~~l~~~~~q~~~le~q~~e~~~~~~E 46 (121)
T PRK09343 13 LAQLQQLQQQLERLLQQKSQIDLELREINKALEE 46 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666667777777777777766666555553
No 465
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=24.68 E-value=6.2e+02 Score=27.12 Aligned_cols=41 Identities=22% Similarity=0.227 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 001721 794 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETA 837 (1020)
Q Consensus 794 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~eE~~ 837 (1020)
.++..+++.|+..+..+ .+.+|+..+++.++-+.-|.+|+.
T Consensus 88 L~~Ae~~~~eA~~~l~e---~e~~L~~A~~eA~~Ii~~A~~eAe 128 (205)
T PRK06231 88 INQANELKQQAQQLLEN---AKQRHENALAQAKEIIDQANYEAL 128 (205)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444333 444455555555555555555544
No 466
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=24.65 E-value=5.8e+02 Score=26.72 Aligned_cols=11 Identities=45% Similarity=0.362 Sum_probs=4.1
Q ss_pred HHHHHHHHHHh
Q 001721 827 EALAVAGEETA 837 (1020)
Q Consensus 827 ea~~~a~eE~~ 837 (1020)
+...-|.+|++
T Consensus 116 ~~~~~A~~e~~ 126 (181)
T PRK13454 116 VAIAKADAEIA 126 (181)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 467
>PF05508 Ran-binding: RanGTP-binding protein; InterPro: IPR008812 The small Ras-like GTPase Ran plays an essential role in the transport of macromolecules in and out of the nucleus and has been implicated in spindle and nuclear envelope formation during mitosis in higher eukaryotes. The Saccharomyces cerevisiae ORF YGL164c encoding a novel RanGTP-binding protein, termed Yrb30p was identified. The protein competes with S. cerevisiae RanBP1 (Yrb1p) for binding to the GTP-bound form of S. cerevisiae Ran (Gsp1p) and is, like Yrb1p, able to form trimeric complexes with RanGTP and some of the karyopherins [].
Probab=24.59 E-value=2.5e+02 Score=31.93 Aligned_cols=57 Identities=19% Similarity=0.201 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhCCC
Q 001721 805 EELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTAQLKDMAEMLPV 862 (1020)
Q Consensus 805 ~~L~~~~~~~~~ei~~~~~~~~ea~~~a~eE~~k~~aake~iksl~~qlk~~~e~lp~ 862 (1020)
++--.=...+..||+...+++.++.... |.+.+.+..|+.||.+...+|++-.|+-.
T Consensus 80 esal~L~~~L~~eI~~f~~~l~~~~~~~-e~~~~~~~~~~~i~~V~~~ik~LL~rId~ 136 (302)
T PF05508_consen 80 ESALPLTKDLRREIDSFDERLEEAAEKE-ELSKSSENQKESIKKVERYIKDLLARIDD 136 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhccCcchhHHHHHHHHHHHHHHHHHHHh
Confidence 3444445557778888888888754421 22666778889999999998888777644
No 468
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=24.55 E-value=3.2e+02 Score=33.47 Aligned_cols=25 Identities=12% Similarity=0.392 Sum_probs=13.1
Q ss_pred eecceeEEEEE-----EcCCCccceeEEEee
Q 001721 952 QDETGVYITLV-----ALPGGLKDLKRVRFS 977 (1020)
Q Consensus 952 ~~e~gv~~t~~-----~~~~g~~~~~rvrf~ 977 (1020)
..+-|.+.+|. .+|.|+.. +||..-
T Consensus 318 ~~~~g~~~~y~i~~~~ti~s~~~~-~~v~i~ 347 (525)
T TIGR02231 318 VEKGGLSVTFKIPGRVTIPSDGDA-HKITIA 347 (525)
T ss_pred eccCccEEEEECCCceeecCCCCc-eEEEEE
Confidence 34566666664 44555543 444443
No 469
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=24.53 E-value=1.8e+02 Score=24.04 Aligned_cols=30 Identities=20% Similarity=0.313 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001721 794 SEEVIKLRAQVEELTRKSQLQEIELERTTR 823 (1020)
Q Consensus 794 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~ 823 (1020)
.+++..|..+|..|+...+.+..+|..+++
T Consensus 24 k~~~~~le~~~~~L~~en~~L~~~i~~L~~ 53 (54)
T PF07716_consen 24 KQREEELEQEVQELEEENEQLRQEIAQLER 53 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 677777777777777777777777776654
No 470
>PF08287 DASH_Spc19: Spc19; InterPro: IPR013251 Spc19 is a component of the DASH complex. The DASH complex associates with the spindle pole body and is important for spindle and kinetochore integrity during cell division [, ].
Probab=24.48 E-value=1.1e+02 Score=31.28 Aligned_cols=31 Identities=26% Similarity=0.294 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001721 794 SEEVIKLRAQVEELTRKSQLQEIELERTTRQ 824 (1020)
Q Consensus 794 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~ 824 (1020)
.+++.+|+.+.++|+++||+++.-|+.....
T Consensus 74 e~~l~kL~Rr~~tL~ak~EL~~~RL~~~~~~ 104 (153)
T PF08287_consen 74 EKHLEKLQRREETLKAKCELQQGRLSNYEST 104 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCccC
Confidence 8899999999999999999999877765443
No 471
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=24.44 E-value=1.3e+02 Score=36.84 Aligned_cols=14 Identities=50% Similarity=0.755 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHH
Q 001721 794 SEEVIKLRAQVEEL 807 (1020)
Q Consensus 794 ~qev~~l~~qv~~L 807 (1020)
.+|+..|+.+++.|
T Consensus 122 ~~El~~l~~~l~~l 135 (511)
T PF09787_consen 122 DQELRRLRRQLEEL 135 (511)
T ss_pred HHHHHHHHHHHHHH
Confidence 55556666665555
No 472
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=24.36 E-value=5e+02 Score=26.83 Aligned_cols=70 Identities=20% Similarity=0.268 Sum_probs=38.1
Q ss_pred cchhhhhhhhHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 001721 784 KIVVDDAKRTSEEVI-------KLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTAQLKDM 856 (1020)
Q Consensus 784 ~~~~~~l~~~~qev~-------~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~eE~~k~~aake~iksl~~qlk~~ 856 (1020)
+-.+++.|+.-++.. -+|.+...|+++.+.++..|..+ ++.+..|..=+.+-..|- .-|+..|++|
T Consensus 73 ~ysE~dik~AYe~A~~lQ~~L~~~re~E~qLr~rRD~LErrl~~l----~~tierAE~l~sqi~vvl---~yL~~dl~~v 145 (159)
T PF05384_consen 73 RYSEEDIKEAYEEAHELQVRLAMLREREKQLRERRDELERRLRNL----EETIERAENLVSQIGVVL---NYLSGDLQQV 145 (159)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH---HHHHhhHHHH
Confidence 334566666633333 34445566666666665555554 454444544455555554 4455666666
Q ss_pred hhhC
Q 001721 857 AEML 860 (1020)
Q Consensus 857 ~e~l 860 (1020)
.+.|
T Consensus 146 ~~~~ 149 (159)
T PF05384_consen 146 SEQI 149 (159)
T ss_pred HHHH
Confidence 6543
No 473
>KOG3366 consensus Mitochondrial F1F0-ATP synthase, subunit d/ATP7 [Energy production and conversion]
Probab=24.34 E-value=2.2e+02 Score=29.59 Aligned_cols=61 Identities=11% Similarity=0.125 Sum_probs=39.5
Q ss_pred hhhhhhh---HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhHHHHHH
Q 001721 787 VDDAKRT---SEEVIKLRAQVEELT-------RKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIK 847 (1020)
Q Consensus 787 ~~~l~~~---~qev~~l~~qv~~L~-------~~~~~~~~ei~~~~~~~~ea~~~a~eE~~k~~aake~ik 847 (1020)
-+..|+- ..=|.+++.+.++|+ +...+.+.|.....+.++|...+...|....+..-|.|+
T Consensus 55 wa~Yrk~va~a~~VD~~ek~y~slk~v~~~~~ky~~~vda~~k~~~~~~ke~~~~s~~~iq~l~k~le~v~ 125 (172)
T KOG3366|consen 55 WAYYRKVVANAGLVDKYEKKYDSLKPVPVDEDKYLKEVDAEEKAAVKEIKEYESLSKKRIQELEKELEKVK 125 (172)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHhccccCCCHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444 333566777888887 777888888888888888877776666554333333333
No 474
>PF06320 GCN5L1: GCN5-like protein 1 (GCN5L1); InterPro: IPR009395 This family consists of several eukaryotic GCN5-like protein 1 (GCN5L1) sequences. The function of this family is unknown [,].
Probab=24.26 E-value=2.6e+02 Score=27.53 Aligned_cols=31 Identities=16% Similarity=0.200 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 001721 796 EVIKLRAQVEELTRKSQLQEIELERTTRQLK 826 (1020)
Q Consensus 796 ev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ 826 (1020)
|...|+.++..|.+++.+....+....+.|+
T Consensus 55 e~k~L~~~~~~l~kqt~qw~~~~~~~~~~LK 85 (121)
T PF06320_consen 55 EAKQLQRNTAKLAKQTDQWLKLVDSFNDALK 85 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444
No 475
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=24.18 E-value=83 Score=30.48 Aligned_cols=43 Identities=26% Similarity=0.418 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q 001721 799 KLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTAQ 852 (1020)
Q Consensus 799 ~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~eE~~k~~aake~iksl~~q 852 (1020)
+|..+...|.++.+.+..+++++..++.| .+.+|+.|+.|...
T Consensus 3 ~l~~~~~~l~~~i~~l~~~~~~l~~~~~e-----------~~~~~~~l~~l~~~ 45 (129)
T cd00890 3 ELAAQLQQLQQQLEALQQQLQKLEAQLTE-----------YEKAKETLETLKKA 45 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHhhcc
Confidence 34455555556665555556655555555 66788888887543
No 476
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=24.18 E-value=3.2e+02 Score=36.46 Aligned_cols=61 Identities=18% Similarity=0.207 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhCCCc
Q 001721 803 QVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTAQLKDMAEMLPVG 863 (1020)
Q Consensus 803 qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~eE~~k~~aake~iksl~~qlk~~~e~lp~~ 863 (1020)
|.+-|..+-+..-..++.++.++.....-..|...-..+-|++|.++..++++....||.-
T Consensus 508 el~~L~~~~~~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~~ 568 (1293)
T KOG0996|consen 508 ELDILLSRHETGLKKVEELKGKLLASSESLKEKKTELDDLKEELPSLKQELKEKEKELPKL 568 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHH
Confidence 4455555555555666677777777777777777777888999999999999988888864
No 477
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=24.17 E-value=2.7e+02 Score=30.15 Aligned_cols=66 Identities=14% Similarity=0.211 Sum_probs=0.0
Q ss_pred CCCCCcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH---HHHHHHHHHHhhhhhHHH
Q 001721 779 GLASPKIVVDDAKRTSEEVIKLRAQVEELTRKSQLQEIELERTTRQLK---EALAVAGEETAKCRAAKD 844 (1020)
Q Consensus 779 ~~~~~~~~~~~l~~~~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~---ea~~~a~eE~~k~~aake 844 (1020)
.+..+...+.+..+.+.|..+|+.++++...++|..+.+...++||.+ .=...+.||.+|....-|
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~ 210 (216)
T KOG1962|consen 142 QLENSSKLEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIE 210 (216)
T ss_pred hhhcccchhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
No 478
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=24.15 E-value=88 Score=29.77 Aligned_cols=65 Identities=23% Similarity=0.337 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHHHhhh
Q 001721 794 SEEVIKLRAQVEELTRKSQLQ-EIELERTTRQLKEALAVAGEETA-KCRAAKDVIKSLTAQLKDMAEM 859 (1020)
Q Consensus 794 ~qev~~l~~qv~~L~~~~~~~-~~ei~~~~~~~~ea~~~a~eE~~-k~~aake~iksl~~qlk~~~e~ 859 (1020)
-++..++..+++.|+..+... ..++... ++-..++..-.+.+. ..+-+...|.+|..||++|...
T Consensus 14 e~~~~~ie~ElEeLTasLFeEAN~MVa~a-r~e~~~~e~k~~~le~~l~e~~~~l~~lq~qL~~LK~v 80 (100)
T PF06428_consen 14 EQEKEQIESELEELTASLFEEANKMVADA-RRERAALEEKNEQLEKQLKEKEALLESLQAQLKELKTV 80 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCTTHHCHCCCHCTSSSSHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666777777788887777433 3333332 222222222222222 2344667788888876655433
No 479
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=24.12 E-value=1.7e+02 Score=27.19 Aligned_cols=31 Identities=23% Similarity=0.256 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 001721 797 VIKLRAQVEELTRKSQLQEIELERTTRQLKE 827 (1020)
Q Consensus 797 v~~l~~qv~~L~~~~~~~~~ei~~~~~~~~e 827 (1020)
+.+++.|...|..+-+++..|++-.+++++.
T Consensus 25 ~~ka~~~~~kL~~en~qlk~Ek~~~~~qvkn 55 (87)
T PF10883_consen 25 VKKAKKQNAKLQKENEQLKTEKAVAETQVKN 55 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677778888888888888888777777776
No 480
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=24.12 E-value=2.2e+02 Score=29.47 Aligned_cols=41 Identities=15% Similarity=0.225 Sum_probs=29.7
Q ss_pred CCcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 001721 782 SPKIVVDDAKRTSEEVIKLRAQVEELTRKSQLQEIELERTTRQL 825 (1020)
Q Consensus 782 ~~~~~~~~l~~~~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~ 825 (1020)
+++.+.++|| .|+.|+.+++..|+|=+-..+.....+++||
T Consensus 26 LsEeE~eeLr---~EL~KvEeEI~TLrqvL~aKer~~~eLKrkL 66 (162)
T PF04201_consen 26 LSEEEREELR---SELAKVEEEIQTLRQVLAAKERHCAELKRKL 66 (162)
T ss_pred CCHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 4444445554 6888888888888888888887777777776
No 481
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=24.12 E-value=3.2e+02 Score=37.34 Aligned_cols=77 Identities=13% Similarity=0.256 Sum_probs=0.0
Q ss_pred cchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHhhhC
Q 001721 784 KIVVDDAKRTSEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCR-AAKDVIKSLTAQLKDMAEML 860 (1020)
Q Consensus 784 ~~~~~~l~~~~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~eE~~k~~-aake~iksl~~qlk~~~e~l 860 (1020)
+..++.|++.+.++..++.++..+++++++.+.++++++.+.+..-.-..++.+..+ .+.+=+..|..+|+.+.+.+
T Consensus 624 ~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~e~ 701 (1201)
T PF12128_consen 624 EELEKQLKQINKKIEELKREITQAEQELKQAEQDLQRLKNEREQLKQEIEEAKEERKEQIEEQLNELEEELKQLKQEL 701 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 482
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=24.08 E-value=3.1e+02 Score=23.81 Aligned_cols=7 Identities=14% Similarity=0.439 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 001721 847 KSLTAQL 853 (1020)
Q Consensus 847 ksl~~ql 853 (1020)
+.|..++
T Consensus 49 ~~L~~e~ 55 (61)
T PF08826_consen 49 ERLKKEM 55 (61)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 483
>PRK09039 hypothetical protein; Validated
Probab=24.08 E-value=2.6e+02 Score=32.42 Aligned_cols=62 Identities=18% Similarity=0.183 Sum_probs=34.7
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 001721 788 DDAKRTSEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTAQLKDM 856 (1020)
Q Consensus 788 ~~l~~~~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~eE~~k~~aake~iksl~~qlk~~ 856 (1020)
++|.....+....+.||..|+++.+.+..+|..++..|.++ .++- +.+++-|..|..+|...
T Consensus 123 ~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~a----e~~~---~~~~~~i~~L~~~L~~a 184 (343)
T PRK09039 123 QELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDAS----EKRD---RESQAKIADLGRRLNVA 184 (343)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHH---HHHHHHHHHHHHHHHHH
Confidence 33443355666666677777777777777766554444432 2222 45566666666655543
No 484
>PF05082 Rop-like: Rop-like; InterPro: IPR007774 This family contains several uncharacterised bacterial proteins. These proteins are found in nitrogen fixation operons, so are likely to play a role in this process.; PDB: 3CSX_A 2JS5_B.
Probab=24.04 E-value=3.2e+02 Score=24.07 Aligned_cols=18 Identities=22% Similarity=0.243 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 001721 795 EEVIKLRAQVEELTRKSQ 812 (1020)
Q Consensus 795 qev~~l~~qv~~L~~~~~ 812 (1020)
.||.||++.....+.++.
T Consensus 9 ~evkKL~~~A~~~kmdLH 26 (66)
T PF05082_consen 9 KEVKKLNRKATQAKMDLH 26 (66)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444433333
No 485
>cd01257 PH_IRS Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. PH domains are only found in eukaryotes, and are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes. The IRS PH domain targets IRS molecules to the plasma membrane, usually in response to insulin stimulation.
Probab=23.93 E-value=58 Score=30.90 Aligned_cols=37 Identities=16% Similarity=0.422 Sum_probs=30.9
Q ss_pred CCcccc-ceEEEEecCcccceeecCcccchhhhhhhHh
Q 001721 12 RPEKEY-QSFSLIYNDRSLDLICKDKDEAEVWFTGLKA 48 (1020)
Q Consensus 12 ~~~~~~-~sfsl~~~~~~ld~ickd~~~~~~w~~~l~~ 48 (1020)
+|++.+ ..|.|+..+|..=|+|.+..|.|-|+..|.-
T Consensus 63 ~~d~k~~~~f~i~t~dr~f~l~aese~E~~~Wi~~i~~ 100 (101)
T cd01257 63 RADAKHRHLIALYTRDEYFAVAAENEAEQDSWYQALLE 100 (101)
T ss_pred ccccccCeEEEEEeCCceEEEEeCCHHHHHHHHHHHhh
Confidence 444443 6899999999999999999999999988754
No 486
>KOG2911 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.91 E-value=3.7e+02 Score=32.01 Aligned_cols=29 Identities=21% Similarity=0.264 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001721 795 EEVIKLRAQVEELTRKSQLQEIELERTTR 823 (1020)
Q Consensus 795 qev~~l~~qv~~L~~~~~~~~~ei~~~~~ 823 (1020)
|=+.+|..|++.|.|+|+..+.++..+=|
T Consensus 240 ~~~~~L~kqie~L~qeie~~~~~~r~~~k 268 (439)
T KOG2911|consen 240 QARAKLAKQIEFLEQEIEKSKEKLRQALK 268 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555444433
No 487
>TIGR03513 GldL_gliding gliding motility-associated protein GldL. This protein family, GldL, is named for the member from Flavobacterium johnsoniae, which is required for a type of rapid gliding motility found in certain members of the Bacteriodetes. However, members are found also in several members of the Bacteriodetes that appear not to be motile
Probab=23.88 E-value=4.4e+02 Score=28.32 Aligned_cols=55 Identities=18% Similarity=0.238 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 001721 794 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTAQLKD 855 (1020)
Q Consensus 794 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~eE~~k~~aake~iksl~~qlk~ 855 (1020)
.+||..+.+++++|..- .+.+|+...++++. +.-+.++|.+ -||=+..||.+|..
T Consensus 136 ~eqm~~aa~~l~~LN~~---Ye~QL~~as~q~~~-~~~i~~na~~---fkeQ~~kLa~NL~s 190 (202)
T TIGR03513 136 IEQMSSLAANMEGLNTI---YEAQLKGASSHADA-NNEIAINSSS---LKEEMEKMAANLTS 190 (202)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH-HHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 55555555555555543 45677777777765 3434666665 56666677766544
No 488
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=23.86 E-value=6.3e+02 Score=25.61 Aligned_cols=16 Identities=19% Similarity=0.109 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 001721 794 SEEVIKLRAQVEELTR 809 (1020)
Q Consensus 794 ~qev~~l~~qv~~L~~ 809 (1020)
.++..+.+.++..+..
T Consensus 45 l~~A~~~~~eA~~~~~ 60 (159)
T PRK13461 45 IEKADEDQKKARELKL 60 (159)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444433
No 489
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=23.79 E-value=1.7e+03 Score=29.01 Aligned_cols=213 Identities=12% Similarity=0.019 Sum_probs=99.3
Q ss_pred EecCCEEEEEEeCCcEEEeCCCCCCCccc---CCCCCcceecceeeCCCCCCCcEEEEEec-----CCeEEEEEcCCcEE
Q 001721 291 ACGEHHTCAVTLSGDMYTWGGSNCNFGLL---GHGNEMSLWLPKKLNGPLEGIHVSSVSCG-----PWHTAVVTSAGQLF 362 (1020)
Q Consensus 291 acG~~ht~aLT~dG~VysWG~n~~~~GqL---G~g~~~~~~~P~~I~~~l~~~~Iv~VacG-----~~Hs~aLt~~G~Vy 362 (1020)
+....+.+++|+.|++|..-.. ..-.. +.|...... + ....+.+|+.+.+- ....+++|.+|.+.
T Consensus 543 ~~t~d~LllfTs~Grv~~l~~~--~IP~~~r~~~G~~i~~l----l-~L~~~E~Iv~~i~~~~~~~~~~lvliT~~GyiK 615 (800)
T TIGR01063 543 ASTHDYLLFFTNRGKVYWLKVY--QIPEASRTAKGKPIVNL----L-PLQPDERITAILSVKEFDDGLYLFFATKNGVVK 615 (800)
T ss_pred ecCCCeEEEEeCCCcEEEEEhh--hCcCCCcCCCCcCHHHh----c-cCCCCCeEEEEEEeccCCCCCEEEEEeCCCEEE
Confidence 3445668899999999988322 11111 122211111 1 12356678777662 23578889999877
Q ss_pred EeccCCCCcCCCCCCccccccee-eccCCCCeEEEEec--CCceEEEEEEeeecCcccccCCCCcEEEecCCCCCCcCCC
Q 001721 363 TFGDGTFGVLGHGDRISVSTPRE-VDSLKGLRTVRAAC--GVWHTAAVVEVMVGSSSSSNCSSGKLFTWGDGDRGRLGHG 439 (1020)
Q Consensus 363 ~wG~N~~GQLG~g~~~~~~~P~~-V~~l~~~~I~~Iac--G~~ht~aLtE~~~~~~~~~~~~~G~Ly~WG~n~~GQLG~g 439 (1020)
-.-.+.+-..... ... +..-.+..++.+.. ...+.++++ +.|++|..-..+--..|..
T Consensus 616 Ri~l~~~~~~~r~-------G~~aiklke~D~lv~v~~~~~~d~lll~T------------s~Gr~~r~~v~eIp~~gr~ 676 (800)
T TIGR01063 616 KTSLTEFSNIRSN-------GIIAIKLDDGDELISVRLTSGDDEVMLGS------------KNGKAVRFPEEDVRPMGRA 676 (800)
T ss_pred EEEhHHhhhhccC-------CcccccCCCCCEEEEEEEeCCCCEEEEEE------------CCCcEEEEEhhhcCCcCCC
Confidence 6643332211000 000 00001223433322 233455555 6899888754433222222
Q ss_pred CCCcceecEEeeccCCCCeeEEEee--CcEEEEEecCCcEEEEeCCCCCCCCCCCCCCCcceeeccccCCCcEEEE--Ee
Q 001721 440 DKEARLVPTCVAALVEPNFCQVSCG--HSLTVALTTTGHVYTMGSPVYGQLGDPKANGKLPTRVEGKLTKNFVEEI--AC 515 (1020)
Q Consensus 440 ~~~~~~~Pt~V~~l~~~~I~~Ia~G--~~htlaLT~dG~Vy~wG~N~~GQLG~~~~~~~~P~~v~~~l~~~~I~~I--a~ 515 (1020)
..... .+..-.+..|+.+..- ..+.+++|++|.+.-.=-.++-..+.+. +--..+...-.+..++.+ .-
T Consensus 677 ~~Gv~----~i~L~~~E~Vv~~~~v~~~~~ll~vT~~G~~Kr~~l~e~~~~~R~~---kGv~~ikl~~~~d~lv~~~~v~ 749 (800)
T TIGR01063 677 ARGVR----GIKLKNEDFVVSLLVVSEESYLLIVTENGYGKRTSIEEYRETSRGG---KGVKSIKITDRNGQVVGAIAVD 749 (800)
T ss_pred CCCee----cccCCCCCEEEEEEEeccccEEEEEecCCcEEEEEHHHccccCCCC---cceEEEEccCCCCeEEEEEEec
Confidence 11111 1222233455555432 3357788888877766443332111100 000111100001223322 22
Q ss_pred cCcEEEEEeCCCeEEEEeCCC
Q 001721 516 GDYHVAVLTSRTEVYTWGKGA 536 (1020)
Q Consensus 516 G~~HslaLTsdG~VytWG~n~ 536 (1020)
+....+++|.+|.+..+-.+.
T Consensus 750 ~~~~v~liT~~G~~lrf~~~e 770 (800)
T TIGR01063 750 DDDELMLITSAGKLIRTSVQD 770 (800)
T ss_pred CCCeEEEEecCCeEEEeeHhh
Confidence 445688889999888876543
No 490
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=23.78 E-value=2.2e+02 Score=27.62 Aligned_cols=32 Identities=19% Similarity=0.198 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 001721 794 SEEVIKLRAQVEELTRKSQLQEIELERTTRQL 825 (1020)
Q Consensus 794 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~ 825 (1020)
.+...+|+.|++.|.++..+++..|.++++-+
T Consensus 5 ~~q~~ql~~~i~~l~~~i~~l~~~i~e~~~~~ 36 (126)
T TIGR00293 5 AAELQILQQQVESLQAQIAALRALIAELETAI 36 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667788888888888888887777775544
No 491
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=23.71 E-value=1.3e+02 Score=25.93 Aligned_cols=23 Identities=13% Similarity=0.221 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHH
Q 001721 806 ELTRKSQLQEIELERTTRQLKEA 828 (1020)
Q Consensus 806 ~L~~~~~~~~~ei~~~~~~~~ea 828 (1020)
+++++.+++|.+|+..+++++.|
T Consensus 29 tiEqRLa~LE~rL~~ae~ra~~a 51 (60)
T PF11471_consen 29 TIEQRLAALEQRLQAAEQRAQAA 51 (60)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677777777777777666653
No 492
>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.
Probab=23.54 E-value=3.8e+02 Score=25.86 Aligned_cols=42 Identities=29% Similarity=0.354 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhh
Q 001721 794 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAK 838 (1020)
Q Consensus 794 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~eE~~k 838 (1020)
.++..+++.++..+..+ .+.+|..++.+.++.+.-|.+|+.+
T Consensus 39 ~~~a~~~~~ea~~~~~e---~~~~l~~a~~ea~~i~~~a~~~a~~ 80 (132)
T PF00430_consen 39 LEEAEELKEEAEQLLAE---YEEKLAEAREEAQEIIEEAKEEAEK 80 (132)
T ss_dssp HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHCHHHHHHCHHHHH
T ss_pred HHhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555544444 3444444555555555455444443
No 493
>PRK14154 heat shock protein GrpE; Provisional
Probab=23.53 E-value=6.4e+02 Score=27.28 Aligned_cols=69 Identities=13% Similarity=0.218 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHH-----------HHHhhhhhHHHHHHHHHHHHHHHhhhCC
Q 001721 794 SEEVIKLRAQVEELTRKSQLQEIELERTTR-QLKEALAVAG-----------EETAKCRAAKDVIKSLTAQLKDMAEMLP 861 (1020)
Q Consensus 794 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~-~~~ea~~~a~-----------eE~~k~~aake~iksl~~qlk~~~e~lp 861 (1020)
.....+++++.++++++.+....++.+... ++-.+++-+. .+....++-.+=|+.+-.||..+-++.=
T Consensus 72 kd~~lRl~ADfeNyRKR~~kE~e~~~~~a~e~~~~~LLpVlDnLeRAL~~~~~~~~~~~~l~eGvemi~k~l~~vL~k~G 151 (208)
T PRK14154 72 KTQYLRAQAEMDNLRKRIEREKADIIKFGSKQLITDLLPVADSLIHGLESPASEDPQVKSMRDGMSLTLDLLHNTLAKHG 151 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHHHCC
Confidence 455567777888888876655555444332 2222222222 2222233344445555556666665544
Q ss_pred C
Q 001721 862 V 862 (1020)
Q Consensus 862 ~ 862 (1020)
.
T Consensus 152 V 152 (208)
T PRK14154 152 V 152 (208)
T ss_pred C
Confidence 3
No 494
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=23.38 E-value=1.1e+02 Score=27.85 Aligned_cols=41 Identities=17% Similarity=0.224 Sum_probs=25.2
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 001721 787 VDDAKRTSEEVIKLRAQVEELTRKSQLQEIELERTTRQLKE 827 (1020)
Q Consensus 787 ~~~l~~~~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~e 827 (1020)
..+||.+.|....+=.++..+.+-+++|+.+|+.++.+++.
T Consensus 30 ~~~lk~Klq~ar~~i~~lpgi~~s~eeq~~~i~~Le~~i~~ 70 (83)
T PF07544_consen 30 TGSLKHKLQKARAAIRELPGIDRSVEEQEEEIEELEEQIRK 70 (83)
T ss_pred HHHHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHHHHHHH
Confidence 34455444433333333334778888888888888877765
No 495
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=23.36 E-value=2.7e+02 Score=33.32 Aligned_cols=22 Identities=23% Similarity=0.351 Sum_probs=15.2
Q ss_pred hHHHHHHHHHH---HHHHHhhhCCC
Q 001721 841 AAKDVIKSLTA---QLKDMAEMLPV 862 (1020)
Q Consensus 841 aake~iksl~~---qlk~~~e~lp~ 862 (1020)
.|.++||+|.. |++.++.++--
T Consensus 404 eaq~~~~slek~~~~~~sl~~~i~~ 428 (622)
T COG5185 404 EAQGIFKSLEKTLRQYDSLIQNITR 428 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 46677777766 77778777543
No 496
>PF11577 NEMO: NF-kappa-B essential modulator NEMO; InterPro: IPR021063 This entry represents a conserved domain found at the N-terminal of NF-kappa-B essential modulator (NEMO) and optineurin proteins. NEMO is a regulatory protein which is part of the IKK complex along with the catalytic IKKalpha and beta kinases. The IKK complex phosphorylates IkappaB targeting it for degradation which results in the release of NF-kappaB which initiates the inflammatory response, cell proliferation or cell differentiation []. NEMO activates the IKK complex's activity by associating with the unphosphorylated IKK kinase C termini. The core domain of NEMO is a dimer which binds to two fragments of IKK []. ; PDB: 3BRT_B 3BRV_D.
Probab=23.34 E-value=4e+02 Score=23.64 Aligned_cols=14 Identities=21% Similarity=0.517 Sum_probs=9.6
Q ss_pred hhhhHHHHHHHHHH
Q 001721 838 KCRAAKDVIKSLTA 851 (1020)
Q Consensus 838 k~~aake~iksl~~ 851 (1020)
|.+.|++.|..|+.
T Consensus 53 kf~Ear~lv~~L~~ 66 (68)
T PF11577_consen 53 KFQEARELVERLKE 66 (68)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhhc
Confidence 44458888887764
No 497
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=23.26 E-value=6.4e+02 Score=25.88 Aligned_cols=17 Identities=24% Similarity=0.392 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 001721 794 SEEVIKLRAQVEELTRK 810 (1020)
Q Consensus 794 ~qev~~l~~qv~~L~~~ 810 (1020)
.+|..+++.|.+.+..+
T Consensus 50 l~~Ae~~k~eAe~~~~~ 66 (167)
T PRK14475 50 LDEAQRLREEAQALLAD 66 (167)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44445555555544444
No 498
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=23.21 E-value=30 Score=39.06 Aligned_cols=66 Identities=21% Similarity=0.462 Sum_probs=25.9
Q ss_pred CcCCccCCCCCcCc--c----c---cccccccccCCc------eEeecCCCCcccccccC-CCCC--CCeeeCccchhhh
Q 001721 583 GVDQSMCSGCRIPF--N----F---KRKRHNCYNCGL------VYCHTCSSKKSVKASMA-PNPN--KPYRVCDNCFGKL 644 (1020)
Q Consensus 583 ~~d~s~Cs~C~~~F--s----~---~~krhhC~~CG~------v~C~~CSs~~~~~~~~~-~~~~--k~~RVC~~C~~~l 644 (1020)
+|....|..|+.+= + - ..|..+|.-||. +-|..|.+.....-..- .... -.+-+|+.|..-+
T Consensus 169 ~w~~g~CPvCGs~P~~s~l~~~~~~G~R~L~Cs~C~t~W~~~R~~Cp~Cg~~~~~~l~~~~~e~~~~~rve~C~~C~~Yl 248 (290)
T PF04216_consen 169 GWQRGYCPVCGSPPVLSVLRGGEREGKRYLHCSLCGTEWRFVRIKCPYCGNTDHEKLEYFTVEGEPAYRVEVCESCGSYL 248 (290)
T ss_dssp -TT-SS-TTT---EEEEEEE------EEEEEETTT--EEE--TTS-TTT---SS-EEE--------SEEEEEETTTTEEE
T ss_pred CccCCcCCCCCCcCceEEEecCCCCccEEEEcCCCCCeeeecCCCCcCCCCCCCcceeeEecCCCCcEEEEECCcccchH
Confidence 34445666665431 1 1 233445666653 35666766554332221 1112 2345899997777
Q ss_pred hccc
Q 001721 645 TKAT 648 (1020)
Q Consensus 645 ~~~~ 648 (1020)
+-..
T Consensus 249 K~vd 252 (290)
T PF04216_consen 249 KTVD 252 (290)
T ss_dssp EEEE
T ss_pred HHHh
Confidence 6544
No 499
>PF06102 DUF947: Domain of unknown function (DUF947); InterPro: IPR009292 This is a family of eukaryotic proteins with unknown function.
Probab=23.17 E-value=3.6e+02 Score=28.10 Aligned_cols=60 Identities=23% Similarity=0.288 Sum_probs=0.0
Q ss_pred hhhhhhHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHH
Q 001721 788 DDAKRTSEEVIKLRAQVEELT--RKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSL 849 (1020)
Q Consensus 788 ~~l~~~~qev~~l~~qv~~L~--~~~~~~~~ei~~~~~~~~ea~~~a~eE~~k~~aake~iksl 849 (1020)
++++ .+|+..|+.|+...+ ...+.+..+|++++.++..--..-.++..+.+.-++.+..+
T Consensus 58 ~d~r--~~E~~~Lk~~lk~~k~~~~~e~lk~~L~~~~~q~~~~~~~~~~~e~~~~~kk~E~e~v 119 (168)
T PF06102_consen 58 DDYR--EKEIKELKKQLKKTKDPEEREELKRELQRMESQLKARKRKDREREVKKEHKKEEREKV 119 (168)
T ss_pred HHHH--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 500
>PF04048 Sec8_exocyst: Sec8 exocyst complex component specific domain; InterPro: IPR007191 Sec8 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0015031 protein transport, 0000145 exocyst
Probab=23.16 E-value=3.2e+02 Score=27.47 Aligned_cols=60 Identities=20% Similarity=0.271 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHH--HHHHHhhhC
Q 001721 794 SEEVIKLRAQVEELTRKSQLQEIELERTTRQLKEALAVAGEETAKCRAAKDVIKSLTA--QLKDMAEML 860 (1020)
Q Consensus 794 ~qev~~l~~qv~~L~~~~~~~~~ei~~~~~~~~ea~~~a~eE~~k~~aake~iksl~~--qlk~~~e~l 860 (1020)
..-|...|..|..|++.++.-...|.--+..+++=|.-+.+ .|++|+.|.. +|+.+-+|+
T Consensus 78 ~~~i~~sq~~i~~lK~~L~~ak~~L~~~~~eL~~L~~~s~~-------~~~mi~iL~~Ie~l~~vP~ki 139 (142)
T PF04048_consen 78 LSSISESQERIRELKESLQEAKSLLGCRREELKELWQRSQE-------YKEMIEILDQIEELRQVPDKI 139 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhHHHH
Done!