Query 001721
Match_columns 1020
No_of_seqs 495 out of 2694
Neff 6.6
Searched_HMMs 29240
Date Tue Mar 26 21:09:52 2013
Command hhsearch -i /local_scratch/syshi/lefta3m2/001721.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H2_45-48//hhsearch_pdb/001721hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kci_A Probable E3 ubiquitin-p 1.0 1 1 571.5 37.6 372 182-579 12-388 (389)
2 4d9s_A UVB-resistance protein 1.0 1 1 552.4 41.5 356 177-558 22-379 (406)
3 3of7_A Regulator of chromosome 1.0 1 1 547.0 41.7 372 182-579 21-451 (473)
4 1a12_A RCC1, regulator of chro 1.0 1 1 541.5 44.5 368 181-581 18-412 (413)
5 3mvd_K Regulator of chromosome 1.0 1 1 538.9 46.0 368 178-579 30-419 (423)
6 4d9s_A UVB-resistance protein 1.0 1 1 514.1 42.6 331 232-578 15-347 (406)
7 3kci_A Probable E3 ubiquitin-p 1.0 1 1 488.0 32.1 328 236-579 4-336 (389)
8 3mvd_K Regulator of chromosome 1.0 1 1 471.2 32.7 322 232-579 23-365 (423)
9 3of7_A Regulator of chromosome 1.0 1 1 470.8 27.2 325 234-578 11-395 (473)
10 1a12_A RCC1, regulator of chro 1.0 1 1 458.7 36.2 318 237-578 12-355 (413)
No 1
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=1.00 E-value=1 Score=571.52 Aligned_cols=372 Identities=35% Similarity=0.626 Sum_probs=346.0
Q ss_pred CCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCEEEEEECCCEEEEEECCCEEEEEECCC
Q ss_conf 53222889969999399999735789776886666544555607831368898899995486799998299099993899
Q 001721 182 GHDDGDSLGDVFIWGECTGDGILGGGIHRSGSYAGVKMDSFVPKAVESAVVLDVQNIACGGRHAALVTKQGEVFSWGEEL 261 (1020)
Q Consensus 182 ~~~~lds~G~Vy~WG~n~~~GqLG~G~~~~~~~~~~~~~~~~P~~i~s~~~~~V~~Ia~G~~hs~~Lt~dG~VyswG~n~ 261 (1020)
...+++++|+||+||.|. +||||.+.. .+...|++++.+...+|++|+||..|+++|+++|+||+||.|.
T Consensus 12 ~~~~l~~~G~v~~wG~n~-~GqLG~~~~---------~~~~~p~~v~~~~~~~i~~i~~G~~~~~~l~~~G~v~~wG~n~ 81 (389)
T 3kci_A 12 ENLYFQGSGTIYGWGHNH-RGQLGGIEG---------AKVKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGYGA 81 (389)
T ss_dssp ---------CEEEEEECT-TSTTSSCSC---------SEEEEEEECHHHHHTCEEEEEEETTEEEEEETTSCEEEEECCG
T ss_pred CCEEECCCCEEEEEECCC-CCCCCCCCC---------CCCCCCEECCCCCCCCEEEEEECCCEEEEECCCCCEEEEECCC
T ss_conf 226688998699703899-751898968---------6642777601346786599984777399995898199988999
Q ss_pred CCCCCCCCCCCCCCCEEEECCCCCCE--EEEEECCCEEEEEEECCCEEEECCCCCCCCCCCCCCCCCEECCEEECCCCCC
Q ss_conf 99657898978776568501489959--9999469879999908939995799988864589898640011221799899
Q 001721 262 GGRLGHGVDSDVSHPKLIDALKNINV--ELVACGEHHTCAVTLSGDMYTWGGSNCNFGLLGHGNEMSLWLPKKLNGPLEG 339 (1020)
Q Consensus 262 ~GqLG~g~~~~~~~P~~V~~l~~~~I--~~VacG~~ht~aLT~dG~Vy~WG~n~~~~GqLG~g~~~~~~~P~~I~~~l~~ 339 (1020)
+||||++...+...|.+++.+....+ ++|+||.+|++||+++|+||+||.| .+||||++.......|.++.. +.+
T Consensus 82 ~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n--~~GqLG~g~~~~~~~p~~v~~-l~~ 158 (389)
T 3kci_A 82 GGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEA--EDGKLGHGNRSPCDRPRVIES-LRG 158 (389)
T ss_dssp GGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECC--GGGTTCSSSCCCEEEEEECGG-GTT
T ss_pred CCCCCCCCCCCCCCCEECCCCCCCCEEEEEECCCCCEEEEECCCCCEEEEECC--CCCCCCCCCCCCCCCCEEECC-CCC
T ss_conf 98889899677337777110157732599987687749999489979997299--898678998756758768436-689
Q ss_pred CCEEEEEECCCEEEEEECCCCEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCEEEEEECCC--CEEEEEEEEEECCCCC
Q ss_conf 82999986698599998299279830699875789888543356143158898099995188--4699999843157654
Q 001721 340 IHVSSVSCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRISVSTPREVDSLKGLRTVRAACGV--WHTAAVVEVMVGSSSS 417 (1020)
Q Consensus 340 ~~Iv~IAcG~~Hs~alTs~G~VytwG~N~~GQLG~g~~~~~~~P~~V~~l~g~~I~~IAcG~--~ht~aIte~~~~~~~~ 417 (1020)
.+|++|+||.+|+++|+++|+||+||.|.+||||+++......|+.+..+.+.+|++|+||. .|+++|+
T Consensus 159 ~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~g~~~t~~l~--------- 229 (389)
T 3kci_A 159 IEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLT--------- 229 (389)
T ss_dssp SCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECCSSCEEEEEE---------
T ss_pred CEEEEEEECCCEEEEEECCCEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCEEEEEEECCCCCEEEEEC---------
T ss_conf 73999971758589994898089948998887689998660455685045898399999768985899990---------
Q ss_pred CCCCCCCEEEECCCCCCCCCCCCCCCCEECEEEECCCCCCEEEEEEECCEEEEEECCCCEEEEECCCCCCCCCCCCCC-C
Q ss_conf 337999279822899987689998750000784025799805997308589999659939999199988889999999-7
Q 001721 418 SNCSSGKLFTWGDGDRGRLGHGDKEARLVPTCVAALVEPNFCQVSCGHSLTVALTTTGHVYTMGSPVYGQLGDPKANG-K 496 (1020)
Q Consensus 418 ~~~s~G~VytWG~n~~GqLG~g~~~~~~~Pt~V~~l~~~~I~~Va~G~~htvaLT~dG~Vy~wGsn~~GQLG~~~~~~-~ 496 (1020)
.+|+||+||.|.+||||.++......|+++..+.+..|++|+||.+|++||+.+|+||+||.|.+||||.+.... .
T Consensus 230 ---~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~ 306 (389)
T 3kci_A 230 ---DDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVR 306 (389)
T ss_dssp ---TTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEETTEEEEEETTSCEEEEECCGGGTTCSSSCCCEE
T ss_pred ---CCCEEEEEECCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEECCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCC
T ss_conf ---59979997399888779899888544679546689967999479987999958993999858999888899986620
Q ss_pred CCEEECCCCCCCCEEEEEECCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCEEEEEECCCCCEEEE
Q ss_conf 43353134577747999963947999967991999938999999999999865671341135652689981577430163
Q 001721 497 LPTRVEGKLTKNFVEEIACGDYHVAVLTSRTEVYTWGKGANGRLGHGDTDDRNFPSLVEALKDKQVKSIVCGTSFTAAIC 576 (1020)
Q Consensus 497 ~P~~v~~~l~~~~V~~Ia~G~~Hs~aLTsdG~VytWG~n~~GQLG~Gd~~~~~~P~~V~~l~~~~V~~IacG~~hT~aL~ 576 (1020)
.|..+.. +.+..|++|+||.+|+++|+++|+||+||.|.+||||+|+.++...|++|+.+.+++|++|+||.+||+||+
T Consensus 307 ~P~~v~~-l~~~~v~~ia~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~~~~~~v~~va~G~~ht~al~ 385 (389)
T 3kci_A 307 RPRQVQG-LQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQRPRLVAALQGKKVNRVACGSAHTLAWS 385 (389)
T ss_dssp EEEECGG-GTTCCEEEEEECSSEEEEEETTCCEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCCCEEEEETTEEEEEC
T ss_pred CCEEECC-CCCCCEEEEEECCCEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEECCCCEEEEE
T ss_conf 8758514-799988999944570999989998998038998868898987746767911358998799996678289994
Q ss_pred EEC
Q ss_conf 201
Q 001721 577 LHK 579 (1020)
Q Consensus 577 ~~k 579 (1020)
..+
T Consensus 386 ~~~ 388 (389)
T 3kci_A 386 TSK 388 (389)
T ss_dssp C--
T ss_pred CCC
T ss_conf 699
No 2
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=1.00 E-value=1 Score=552.42 Aligned_cols=356 Identities=38% Similarity=0.631 Sum_probs=331.0
Q ss_pred CCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCEEEEEECCCEEEEEECCC-EEE
Q ss_conf 4889753222889969999399999735789776886666544555607831368898899995486799998299-099
Q 001721 177 SSQGSGHDDGDSLGDVFIWGECTGDGILGGGIHRSGSYAGVKMDSFVPKAVESAVVLDVQNIACGGRHAALVTKQG-EVF 255 (1020)
Q Consensus 177 ~s~gs~~~~lds~G~Vy~WG~n~~~GqLG~G~~~~~~~~~~~~~~~~P~~i~s~~~~~V~~Ia~G~~hs~~Lt~dG-~Vy 255 (1020)
+.++.|.++++++|.||+||.|. +||||.+.. .+...|+++..+...+|++|+||..|+++|+++| +||
T Consensus 22 a~G~~hs~al~~~g~v~~wG~n~-~GqLG~g~~---------~~~~~P~~v~~l~~~~i~~va~G~~ht~al~~~gg~v~ 91 (406)
T 4d9s_A 22 SAGASHSVALLSGDIVCSWGRGE-DGQLGHGDA---------EDRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGMEVY 91 (406)
T ss_dssp EECSSEEEEEETTTEEEEEECCT-TSTTCSSSC---------CCEEEEEECGGGTTSCEEEEEECSSEEEEEETTTTEEE
T ss_pred ECCCCEEEEEEECCEEEEEECCC-CCCCCCCCC---------CCCCCCEEECCCCCCCEEEEEECCCEEEEEECCCCEEE
T ss_conf 61879099998299899986999-988897986---------55738878224689978999828450899988899899
Q ss_pred EEECCCCCCCCCCCCCCCCCCEEEECCCCCCEEEEEECCCEEEEEEECCCEEEECCCCCCCCCCCCCCCCCEECCEEECC
Q ss_conf 99389999657898978776568501489959999946987999990893999579998886458989864001122179
Q 001721 256 SWGEELGGRLGHGVDSDVSHPKLIDALKNINVELVACGEHHTCAVTLSGDMYTWGGSNCNFGLLGHGNEMSLWLPKKLNG 335 (1020)
Q Consensus 256 swG~n~~GqLG~g~~~~~~~P~~V~~l~~~~I~~VacG~~ht~aLT~dG~Vy~WG~n~~~~GqLG~g~~~~~~~P~~I~~ 335 (1020)
+||.|.+||||++...+...|.++..+.+.+|++|+||.+|++||+++|+||+||.| .+||||.+.......|.++..
T Consensus 92 ~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~ia~G~~h~~alt~~G~v~~wG~n--~~GqLG~g~~~~~~~p~~v~~ 169 (406)
T 4d9s_A 92 SWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRN--QNGQLGLGDTEDSLVPQKIQA 169 (406)
T ss_dssp EEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEECSSEEEEEETTSCEEEEECC--TTSTTCSSSCCCEEEEEECGG
T ss_pred EECCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEECHHHEEEECCCCCEEEECCC--CCCCCCCCCCCCCCCCEEECC
T ss_conf 975998868998998764610684146899889999770465897389859990799--875477989877552357435
Q ss_pred CCCCCCEEEEEECCCEEEEEECCCCEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCEEEEEECCCCEEEEEEEEEECCC
Q ss_conf 98998299998669859999829927983069987578988854335614315889809999518846999998431576
Q 001721 336 PLEGIHVSSVSCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRISVSTPREVDSLKGLRTVRAACGVWHTAAVVEVMVGSS 415 (1020)
Q Consensus 336 ~l~~~~Iv~IAcG~~Hs~alTs~G~VytwG~N~~GQLG~g~~~~~~~P~~V~~l~g~~I~~IAcG~~ht~aIte~~~~~~ 415 (1020)
+.+.+|++|+||.+|+++|+++|+||+||.|.+||||+++......|.++..+.+.+|++|+||.+|+++|+
T Consensus 170 -~~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~i~~va~G~~ht~~l~------- 241 (406)
T 4d9s_A 170 -FEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISVS------- 241 (406)
T ss_dssp -GTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSSCCEEEEEECCCSTTCCEEEEEECSSEEEEEE-------
T ss_pred -CCCCCEEEEECCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCEEECCCCCCEEEEEEECCCCEEEEC-------
T ss_conf -689738999647873999947998898417988877889987768627840368962999997898189994-------
Q ss_pred CCCCCCCCCEEEECCCCCCCCCCCCCCCCEECEEEECCCCCCEEEEEEECCEEEEEECCCCEEEEECCCCCCCCCCCCCC
Q ss_conf 54337999279822899987689998750000784025799805997308589999659939999199988889999999
Q 001721 416 SSSNCSSGKLFTWGDGDRGRLGHGDKEARLVPTCVAALVEPNFCQVSCGHSLTVALTTTGHVYTMGSPVYGQLGDPKANG 495 (1020)
Q Consensus 416 ~~~~~s~G~VytWG~n~~GqLG~g~~~~~~~Pt~V~~l~~~~I~~Va~G~~htvaLT~dG~Vy~wGsn~~GQLG~~~~~~ 495 (1020)
.+|+||+||.|.+||||+++......|+++..+.+..|++|+||.+|++||+.+|+||+||.|.+||||.+....
T Consensus 242 -----~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~v~~i~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~ 316 (406)
T 4d9s_A 242 -----YSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLD 316 (406)
T ss_dssp -----TTCCEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSSSC
T ss_pred -----CCCCEEEEECCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEECCCEEEEECCCCEEEEEECCCCCCCCCCCCCC
T ss_conf -----899889963899887899987675056782325899889998467879999599909993389988887899877
Q ss_pred -CCCEEECCCCCCCCEEEEEECCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCEEECCC
Q ss_conf -743353134577747999963947999967991999938999999999999865671341135
Q 001721 496 -KLPTRVEGKLTKNFVEEIACGDYHVAVLTSRTEVYTWGKGANGRLGHGDTDDRNFPSLVEALK 558 (1020)
Q Consensus 496 -~~P~~v~~~l~~~~V~~Ia~G~~Hs~aLTsdG~VytWG~n~~GQLG~Gd~~~~~~P~~V~~l~ 558 (1020)
..|.++.. +....|++|+||.+|++||+++|+||+||.|.+||||+|+..++..|++|+.+.
T Consensus 317 ~~~p~~v~~-~~~~~v~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~ 379 (406)
T 4d9s_A 317 QCSPVQVRF-PDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDRNFPKIIEALS 379 (406)
T ss_dssp EEEEEEECC-GGGCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEECGGGC
T ss_pred CCCCEEEEC-CCCCCEEEEEECCCEEEEEECCCCEEEECCCCCCCCCCCCCCCCCCCEEEEEEC
T ss_conf 746779732-679858999928994999948997899659988866899987773887850026
No 3
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=547.02 Aligned_cols=372 Identities=24% Similarity=0.381 Sum_probs=319.2
Q ss_pred CCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCC--CCCCEEEEEECCCEEEEEECCCEEEEEEC
Q ss_conf 5322288996999939999973578977688666654455560783136--88988999954867999982990999938
Q 001721 182 GHDDGDSLGDVFIWGECTGDGILGGGIHRSGSYAGVKMDSFVPKAVESA--VVLDVQNIACGGRHAALVTKQGEVFSWGE 259 (1020)
Q Consensus 182 ~~~~lds~G~Vy~WG~n~~~GqLG~G~~~~~~~~~~~~~~~~P~~i~s~--~~~~V~~Ia~G~~hs~~Lt~dG~VyswG~ 259 (1020)
+.+++..+|+||+||.|. +||||+|... ...+...|.++..+ ...+|++|+||..|+++|+++|+||+||.
T Consensus 21 h~~~~~~~g~v~~wG~n~-~GqLG~G~~~------~~~~~~~P~~~~~~~~~~~~i~~va~G~~Ht~alt~~G~v~~wG~ 93 (473)
T 3of7_A 21 HMYLSVQPLDIFCWGTGS-MCELGLGPLA------KNKEVKRPRLNPFLPRDEAKIISFAVGGMHTLALDEESNVWSWGC 93 (473)
T ss_dssp HHHCCSSCCEEEEEEECT-TSTTCSCSCG------GGGEEEEEEECTTSCTTTTCEEEEEECSSEEEEEETTCCEEEEEC
T ss_pred CCCCCCCCCCEEEECCCC-CCCCCCCCCC------CCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEECCCEEEEEEC
T ss_conf 102678876589981898-8736989776------664455762155455577878999707876999916984999689
Q ss_pred CCCCCCCCCCCCC-----------------------CCCCEEEEC--C----CCCCEEEEEECCCEEEEEEECCCEEEEC
Q ss_conf 9999657898978-----------------------776568501--4----8995999994698799999089399957
Q 001721 260 ELGGRLGHGVDSD-----------------------VSHPKLIDA--L----KNINVELVACGEHHTCAVTLSGDMYTWG 310 (1020)
Q Consensus 260 n~~GqLG~g~~~~-----------------------~~~P~~V~~--l----~~~~I~~VacG~~ht~aLT~dG~Vy~WG 310 (1020)
|.+||||++.... ...|.+|+. + .+.+|++|+||.+|++||+++|+||+||
T Consensus 94 n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~l~~~~~~~~i~~va~G~~hs~alt~~G~vy~wG 173 (473)
T 3of7_A 94 NDVGALGRDTSNAKEQLKDMDADDSSDDEDGDLNELESTPAKIPRESFPPLAEGHKVVQLAATDNMSCALFSNGEVYAWG 173 (473)
T ss_dssp CTTSTTCSCCC---------------------CCHHHHSCEECCGGGCHHHHTTCCEEEEEECSSEEEEEETTSCEEEEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCEEEEECCCCEEEEEECCCEEEEEE
T ss_conf 98888999886533332345655567543344463346750134345775458981899982688799994898499946
Q ss_pred CCCCCCCCCCCCCC--CCEECCEEECCCCCCCCEEEEEECCCEEEEEECCCCEEEECCCCCCCCCCCCCCC----CCCCE
Q ss_conf 99988864589898--6400112217998998299998669859999829927983069987578988854----33561
Q 001721 311 GSNCNFGLLGHGNE--MSLWLPKKLNGPLEGIHVSSVSCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRIS----VSTPR 384 (1020)
Q Consensus 311 ~n~~~~GqLG~g~~--~~~~~P~~I~~~l~~~~Iv~IAcG~~Hs~alTs~G~VytwG~N~~GQLG~g~~~~----~~~P~ 384 (1020)
.|....||||.+.. .....|.++.. +.+.+|++|+||.+|+++|+.+|+||+||.|.+||||++.... ...|.
T Consensus 174 ~n~~~~GqLG~~~~~~~~~~~P~~v~~-l~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~p~ 252 (473)
T 3of7_A 174 TFRCNEGILGFYQDKIKIQKTPWKVPT-FSKYNIVQLAPGKDHILFLDEEGMVFAWGNGQQNQLGRKVMERFRLKTLDPR 252 (473)
T ss_dssp CEEETTEEEESBTTTBSCEEEEEECCC-CCSSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTSSCCCGGGTTTTCSCE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCEECCC-CCCCCEEEEEECCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCE
T ss_conf 996898754888877741447677552-4788879999637838999179929997699888889884454333543752
Q ss_pred EECCCCCCEEEEEECCCCEEEEEEEEEECCCCCCCCCCCCEEEECCCCCCCCCCCCCC----CCEECEEEECCCCCCEEE
Q ss_conf 4315889809999518846999998431576543379992798228999876899987----500007840257998059
Q 001721 385 EVDSLKGLRTVRAACGVWHTAAVVEVMVGSSSSSNCSSGKLFTWGDGDRGRLGHGDKE----ARLVPTCVAALVEPNFCQ 460 (1020)
Q Consensus 385 ~V~~l~g~~I~~IAcG~~ht~aIte~~~~~~~~~~~s~G~VytWG~n~~GqLG~g~~~----~~~~Pt~V~~l~~~~I~~ 460 (1020)
.+.. .+|++|+||.+|++||+ .+|+||+||.|.+||||++... ....|+.|..+.+.+|++
T Consensus 253 ~~~~---~~v~~Ia~G~~hs~alt------------~~G~v~~wG~n~~GqlG~~~~~~~~~~~~~P~~v~~~~~~~i~~ 317 (473)
T 3of7_A 253 PFGL---RHVKYIASGENHCFALT------------KDNKLVSWGLNQFGQCGVSEDVEDGALVTKPKRLALPDNVVIRS 317 (473)
T ss_dssp ECSC---CSEEEEEECSSEEEEEE------------TTSCEEEEEECTTSTTCCCSCCCTTCEEEEEEECCCCTTCCEEE
T ss_pred ECCC---CCEEEEECCCCEEEEEE------------CCCCEEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCEEE
T ss_conf 1277---66389954897589991------------69988993789898858887656884454132125567863899
Q ss_pred EEEECCEEEEEECCCCEEEEECCCCCCCCCCCCC---------------CCCCEEECCCCCCCCEEEEEECCCEEEEEEC
Q ss_conf 9730858999965993999919998888999999---------------9743353134577747999963947999967
Q 001721 461 VSCGHSLTVALTTTGHVYTMGSPVYGQLGDPKAN---------------GKLPTRVEGKLTKNFVEEIACGDYHVAVLTS 525 (1020)
Q Consensus 461 Va~G~~htvaLT~dG~Vy~wGsn~~GQLG~~~~~---------------~~~P~~v~~~l~~~~V~~Ia~G~~Hs~aLTs 525 (1020)
|+||.+|+++|+.+|+||+||.|.+||||.+... ...|..+.. ...|++|+||.+|++||++
T Consensus 318 ia~G~~hs~~lt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~P~~v~~---~~~v~~Ia~G~~hs~al~~ 394 (473)
T 3of7_A 318 IAAGEHHSLILSQDGDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGKARAVPLPTKLNN---VPKFKSVAAGSHHSVAVAQ 394 (473)
T ss_dssp EEECSSEEEEEETTSCEEEEEECTTCTTCCCGGGCCTTCEECTTSCEEEEEEEEECCS---SCCEEEEEECSSEEEEEET
T ss_pred EEECCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCC---CCCEEEEEECCCEEEEEEC
T ss_conf 9867886999938982999878998741888444665310045786026216700478---7753799857876999968
Q ss_pred CCEEEEEECCCCCCCCCCC-CCCCCCCCEEE--CCCCCCEEEEEECCCCCEEEEEEC
Q ss_conf 9919999389999999999-99865671341--135652689981577430163201
Q 001721 526 RTEVYTWGKGANGRLGHGD-TDDRNFPSLVE--ALKDKQVKSIVCGTSFTAAICLHK 579 (1020)
Q Consensus 526 dG~VytWG~n~~GQLG~Gd-~~~~~~P~~V~--~l~~~~V~~IacG~~hT~aL~~~k 579 (1020)
+|+||+||.|.+||||+|+ .++...|++|+ .+.+++|++|+||..||+++....
T Consensus 395 ~G~vy~wG~n~~GqLG~g~~~~~~~~P~~v~~~~~~~~~v~~v~cG~~~s~~~~~~~ 451 (473)
T 3of7_A 395 NGIAYSWGFGETYAVGLGPFEDDTEVPTRIKNTATQDHNIILVGCGGQFSVSGGVKL 451 (473)
T ss_dssp TSCEEEEECCTTCTTCCCSCCSCEEEEEECCCTTTTTEEEEEEEECSSEEEEEEEEC
T ss_pred CCCEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCEEEEEEECCCEEEEEEECC
T ss_conf 984899628989888799977656378482256668972899951888599997447
No 4
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Probab=1.00 E-value=1 Score=541.51 Aligned_cols=368 Identities=27% Similarity=0.455 Sum_probs=322.0
Q ss_pred CCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCEEEEEECCCEEEEEECCCEEEEEECC
Q ss_conf 75322288996999939999973578977688666654455560783136889889999548679999829909999389
Q 001721 181 SGHDDGDSLGDVFIWGECTGDGILGGGIHRSGSYAGVKMDSFVPKAVESAVVLDVQNIACGGRHAALVTKQGEVFSWGEE 260 (1020)
Q Consensus 181 s~~~~lds~G~Vy~WG~n~~~GqLG~G~~~~~~~~~~~~~~~~P~~i~s~~~~~V~~Ia~G~~hs~~Lt~dG~VyswG~n 260 (1020)
.|.++++.+|.||+||.|. +||||+|... .....|+++.. ..+|++|+||..|+++|+++|+||+||.|
T Consensus 18 ~h~~~l~~~g~v~~wG~n~-~GqLG~g~~~--------~~~~~P~~v~~--~~~i~~va~G~~hs~~l~~~G~v~~wG~n 86 (413)
T 1a12_A 18 SHRSHSTEPGLVLTLGQGD-VGQLGLGENV--------MERKKPALVSI--PEDVVQAEAGGMHTVCLSKSGQVYSFGCN 86 (413)
T ss_dssp CCTTCCCCCBEEEEEEECT-TSTTCSCTTC--------CEEEEEEEECC--SSCEEEEEECSSEEEEEETTSCEEEEECC
T ss_pred CCCEEECCCCCEEEEECCC-CCCCCCCCCC--------CCCCCCEECCC--CCCEEEEEECCCEEEEECCCCCEEEEECC
T ss_conf 4204006898689977898-9837989986--------43046567168--89869998677758999479989998899
Q ss_pred CCCCCCCCCCC--CCCCCEEEECCCCCCEEEEEECCCEEEEEEECCCEEEECC--CCCCCCCCCCCCCCCE-ECCEEECC
Q ss_conf 99965789897--8776568501489959999946987999990893999579--9988864589898640-01122179
Q 001721 261 LGGRLGHGVDS--DVSHPKLIDALKNINVELVACGEHHTCAVTLSGDMYTWGG--SNCNFGLLGHGNEMSL-WLPKKLNG 335 (1020)
Q Consensus 261 ~~GqLG~g~~~--~~~~P~~V~~l~~~~I~~VacG~~ht~aLT~dG~Vy~WG~--n~~~~GqLG~g~~~~~-~~P~~I~~ 335 (1020)
.+||||++... ....|.+|.. . .+|++|+||.+|++||+++|+||+||. | .+||||.+..... ..|.++.
T Consensus 87 ~~GqLG~~~~~~~~~~~P~~v~l-~-~~i~~va~G~~hs~alt~~G~v~~wG~~~n--~~GqlG~~~~~~~~~~P~~v~- 161 (413)
T 1a12_A 87 DEGALGRDTSVEGSEMVPGKVEL-Q-EKVVQVSAGDSHTAALTDDGRVFLWGSFRD--NNGVIGLLEPMKKSMVPVQVQ- 161 (413)
T ss_dssp TTSTTCSCCCSTTGGGSCEECCC-C-SCEEEEEECSSEEEEEETTSCEEEEECEEE--TTEEEESSBBTBCEEEEEEEC-
T ss_pred CCCCCCCCCCCCCCCCCCEEECC-C-CCEEEEECCCCEEEEECCCCCEEEEECCCC--CCCCCCCCCCCCCCCCCEEEC-
T ss_conf 98877988888753458747538-8-758999668873799848994899437768--998637678664466787961-
Q ss_pred CCCCCCEEEEEECCCEEEEEECCCCEEEECCCCCCCCCCCCCC-----------CCCCCEEECCC-----CCCEEEEEEC
Q ss_conf 9899829999866985999982992798306998757898885-----------43356143158-----8980999951
Q 001721 336 PLEGIHVSSVSCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRI-----------SVSTPREVDSL-----KGLRTVRAAC 399 (1020)
Q Consensus 336 ~l~~~~Iv~IAcG~~Hs~alTs~G~VytwG~N~~GQLG~g~~~-----------~~~~P~~V~~l-----~g~~I~~IAc 399 (1020)
...+|++|+||.+|+++|+++|+||+||.|.+||||++... ....|+.+... ...+|++|+|
T Consensus 162 --~~~~i~~ia~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~P~~v~~~~~g~~~~~~i~~ia~ 239 (413)
T 1a12_A 162 --LDVPVVKVASGNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFC 239 (413)
T ss_dssp --CSSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSCGGGTSSSCGGGGHHHHHSCEECCCBCSSCCSBCCEEEEEE
T ss_pred --CCCCEEEEEECCCEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCEEEEEE
T ss_conf --899779998467618998589988983389888668875333455554553224467457631456667854899970
Q ss_pred CCCEEEEEEEEEECCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEECEEEECCCC--CCEEEEEEECCEEEEEECCCCE
Q ss_conf 88469999984315765433799927982289998768999875000078402579--9805997308589999659939
Q 001721 400 GVWHTAAVVEVMVGSSSSSNCSSGKLFTWGDGDRGRLGHGDKEARLVPTCVAALVE--PNFCQVSCGHSLTVALTTTGHV 477 (1020)
Q Consensus 400 G~~ht~aIte~~~~~~~~~~~s~G~VytWG~n~~GqLG~g~~~~~~~Pt~V~~l~~--~~I~~Va~G~~htvaLT~dG~V 477 (1020)
|.+|+++|+ .+|+||+||.|.+||||+++......|+.|..+.+ ..|++|+||.+|+++|+.+|+|
T Consensus 240 G~~hs~alt------------~~G~v~~wG~n~~gqLG~~~~~~~~~P~~v~~l~~~~~~v~~ia~G~~hs~al~~~G~v 307 (413)
T 1a12_A 240 GAYFTFAIS------------HEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKA 307 (413)
T ss_dssp ETTEEEEEE------------TTCCEEEEECCTTSTTSCSSCSCEEEEEECGGGCCTTCCEEEEEECSSEEEEEETTSCE
T ss_pred CCCEEEEEE------------CCCCEEEEECCCCCCCCCCCCCCCCCCEECHHCCCCCCEEEEEECCCCEEEEEECCCCE
T ss_conf 788799996------------89979998499876777999876356677010158873299995052458999079989
Q ss_pred EEEECCCCCCCCCCCC--CCCCCEEECCCCCCCCEEEEEECCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 9991999888899999--99743353134577747999963947999967991999938999999999999865671341
Q 001721 478 YTMGSPVYGQLGDPKA--NGKLPTRVEGKLTKNFVEEIACGDYHVAVLTSRTEVYTWGKGANGRLGHGDTDDRNFPSLVE 555 (1020)
Q Consensus 478 y~wGsn~~GQLG~~~~--~~~~P~~v~~~l~~~~V~~Ia~G~~Hs~aLTsdG~VytWG~n~~GQLG~Gd~~~~~~P~~V~ 555 (1020)
|+||.|.+||||.+.. ....|.++... ..|++|+||.+|+++|+++|+||+||.|.+||||+|+.++...|++|.
T Consensus 308 ~~wG~n~~GqLG~g~~~~~~~~P~~v~~l---~~v~~v~~G~~hs~alt~~G~v~~wG~n~~gqLG~g~~~~~~~P~~v~ 384 (413)
T 1a12_A 308 YSLGRAEYGRLGLGEGAEEKSIPTLISRL---PAVSSVACGASVGYAVTKDGRVFAWGMGTNYQLGTGQDEDAWSPVEMM 384 (413)
T ss_dssp EEEECCGGGTTCSCTTCCCEEEEEECCSS---SSEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCSCEEEEEECC
T ss_pred EEEECCCCCCCCCCCCCCCCCCCEEECCC---CCEEEEEECCCEEEEEECCCCEEEECCCCCCCCCCCCCCCCCCCEECC
T ss_conf 98648988866899988636677792266---762599977564799948997899228989878799988755374854
Q ss_pred C--CCCCCEEEEEECCCCCEEEEEECCC
Q ss_conf 1--3565268998157743016320123
Q 001721 556 A--LKDKQVKSIVCGTSFTAAICLHKWV 581 (1020)
Q Consensus 556 ~--l~~~~V~~IacG~~hT~aL~~~kwv 581 (1020)
. +.+..|++|+||.+||++|+.++-+
T Consensus 385 ~~~~~~~~v~~v~~G~~ht~~l~~~g~~ 412 (413)
T 1a12_A 385 GKQLENRVVLSVSSGGQHTVLLVKDKEQ 412 (413)
T ss_dssp STTTTTEEEEEEEECSSEEEEEEEECSC
T ss_pred CCCCCCCEEEEEEECCCCEEEEEECCCC
T ss_conf 5565898699995578828999816889
No 5
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=1.00 E-value=1 Score=538.85 Aligned_cols=368 Identities=26% Similarity=0.394 Sum_probs=323.1
Q ss_pred CCCC-CCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCEEEEEECCCEEEEEECCCEEEE
Q ss_conf 8897-532228899699993999997357897768866665445556078313688988999954867999982990999
Q 001721 178 SQGS-GHDDGDSLGDVFIWGECTGDGILGGGIHRSGSYAGVKMDSFVPKAVESAVVLDVQNIACGGRHAALVTKQGEVFS 256 (1020)
Q Consensus 178 s~gs-~~~~lds~G~Vy~WG~n~~~GqLG~G~~~~~~~~~~~~~~~~P~~i~s~~~~~V~~Ia~G~~hs~~Lt~dG~Vys 256 (1020)
+.|. +..+++.+|+||+||.|. +||||+|.+. .+...|.+++.+ .+|++|+||..|+++|+++|+||+
T Consensus 30 a~g~~~~~~l~~~G~v~~wG~n~-~GqLG~g~~~--------~~~~~p~~v~~l--~~v~~va~G~~h~~~l~~~G~v~~ 98 (423)
T 3mvd_K 30 AFHLELPKRRTVLGNVLVCGNGD-VGQLGLGEDI--------LERKRLSPVAGI--PDAVDISAGGMHNLVLTKSGDIYS 98 (423)
T ss_dssp CCCCCCCCCCCCCEEEEEEEECT-TSTTCSCSSC--------CEEEEEEECCSC--SSEEEEEECSSEEEEEETTSCEEE
T ss_pred ECCCCCCEEECCCCCEEEEECCC-CCCCCCCCCC--------CCCCCCEECCCC--CCCEEEEECCCEEEEEECCCEEEE
T ss_conf 63776533166997199986998-7778999987--------567687675688--984499507894899957994998
Q ss_pred EECCCCCCCCCCCCCC--CCCCEEEECCCCCCEEEEEECCCEEEEEEECCCEEEECC--CCCCCCCCCCCCCCCEECCEE
Q ss_conf 9389999657898978--776568501489959999946987999990893999579--998886458989864001122
Q 001721 257 WGEELGGRLGHGVDSD--VSHPKLIDALKNINVELVACGEHHTCAVTLSGDMYTWGG--SNCNFGLLGHGNEMSLWLPKK 332 (1020)
Q Consensus 257 wG~n~~GqLG~g~~~~--~~~P~~V~~l~~~~I~~VacG~~ht~aLT~dG~Vy~WG~--n~~~~GqLG~g~~~~~~~P~~ 332 (1020)
||.|.+||||++...+ ...|.+|... .+|++|+||.+|++||+++|+||+||. | .+||||.+.......|.+
T Consensus 99 wG~n~~GqLG~~~~~~~~~~~P~~v~~~--~~i~~va~G~~hs~al~~~G~v~~wG~~~n--~~GqlG~~~~~~~~~p~~ 174 (423)
T 3mvd_K 99 FGCNDEGALGRDTSEDGSESKPDLIDLP--GKALCISAGDSHSACLLEDGRVFAWGSFRD--SHGNMGLTIDGNKRTPID 174 (423)
T ss_dssp EECCSSSTTCSCCCSTTSSSSCEECCCS--SCEEEEEECSSEEEEEETTSCEEEEECEEC--SSSEEESBTTBCEEEEEE
T ss_pred EECCCCCCCCCCCCCCCCCCCCEEECCC--CCEEEEECCCCEEEEEECCCEEEEEECCCC--CCCCCCCCCCCCCCEEEE
T ss_conf 6789985899987678656577597479--978999848682899917996999769889--899867477888723469
Q ss_pred ECCCCCCCCEEEEEECCCEEEEEECCCCEEEECCCCCCCCCCCCCC-----------CCCCCEEECCCCCCEEEEEECCC
Q ss_conf 1799899829999866985999982992798306998757898885-----------43356143158898099995188
Q 001721 333 LNGPLEGIHVSSVSCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRI-----------SVSTPREVDSLKGLRTVRAACGV 401 (1020)
Q Consensus 333 I~~~l~~~~Iv~IAcG~~Hs~alTs~G~VytwG~N~~GQLG~g~~~-----------~~~~P~~V~~l~g~~I~~IAcG~ 401 (1020)
+ +.+.+|++|+||.+|+++|+++|+||+||.|.+||||++... ....|.++..+....|++|+||.
T Consensus 175 ~---~~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~p~~v~~~~~~~v~~i~~g~ 251 (423)
T 3mvd_K 175 L---MEGTVCCSIASGADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLIITRAKPFEAIWATN 251 (423)
T ss_dssp S---STTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTSSCCTTTTTSCSTTTTTTTSSCEEECCTTCCCEEEEEEET
T ss_pred E---CCCCCEEEEECCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEEECC
T ss_conf 6---6998589995389749999269809996278678547776434454333453335687688406886279999799
Q ss_pred CEEEEEEEEEECCCCCCCCCCCCEEEECCCCCCCCCCCCC--CCCEECEEEECCCCCCEEEEEEECCEEEEEECCCCEEE
Q ss_conf 4699999843157654337999279822899987689998--75000078402579980599730858999965993999
Q 001721 402 WHTAAVVEVMVGSSSSSNCSSGKLFTWGDGDRGRLGHGDK--EARLVPTCVAALVEPNFCQVSCGHSLTVALTTTGHVYT 479 (1020)
Q Consensus 402 ~ht~aIte~~~~~~~~~~~s~G~VytWG~n~~GqLG~g~~--~~~~~Pt~V~~l~~~~I~~Va~G~~htvaLT~dG~Vy~ 479 (1020)
+|++++.. .+|+||+||.|.+||||.+.. .....|..+. ..+|++|+||.+|+++|+.+|+||+
T Consensus 252 ~~~~~~~~-----------~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~---~~~v~~ia~G~~ht~alt~~G~v~~ 317 (423)
T 3mvd_K 252 YCTFMRES-----------QTQVIWATGLNNFKQLAHETKGKEFALTPIKTE---LKDIRHIAGGQHHTVILTTDLKCSV 317 (423)
T ss_dssp TEEEEEET-----------TTCCEEEEEECTTCTTSSCCTTCSEEEEEEEEC---CCSEEEEEECSSEEEEEETTCCEEE
T ss_pred CEEEEEEC-----------CCCEEEEEECCCCCCCCCCCCCCCEEEEEEECC---CCCEEEEECCCCEEEEEECCCCEEE
T ss_conf 67999988-----------999499974999876799998874146448707---8874899724676999958993999
Q ss_pred EECCCCCCCCCCCCCC--CCCEEECCCCCCCCEEEEEECCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCEEEC-
Q ss_conf 9199988889999999--7433531345777479999639479999679919999389999999999998656713411-
Q 001721 480 MGSPVYGQLGDPKANG--KLPTRVEGKLTKNFVEEIACGDYHVAVLTSRTEVYTWGKGANGRLGHGDTDDRNFPSLVEA- 556 (1020)
Q Consensus 480 wGsn~~GQLG~~~~~~--~~P~~v~~~l~~~~V~~Ia~G~~Hs~aLTsdG~VytWG~n~~GQLG~Gd~~~~~~P~~V~~- 556 (1020)
||.|.+||||.+.... ..|..+.. +.. .|++|+||.+|+++|+++|+||+||.|.+||||+|+..+...|++|..
T Consensus 318 wG~n~~GqLG~g~~~~~~~~p~~v~~-l~~-~v~~ia~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~~ 395 (423)
T 3mvd_K 318 VGRPEYGRLGLGDVKDVVEKPTIVKK-LTE-KIVSVGCGEVCSYAVTIDGKLYSWGSGVNNQLGVGDGDDELEPIVVVSK 395 (423)
T ss_dssp EECCGGGTTCSSSCCSCEEEEEECTT-CCS-CEEEEEEETTEEEEEETTSCEEEEECCTTSCSSSSSSCCEEEEEECCST
T ss_pred EECCCCCCCCCCCCCCCCCCCEEECC-CCC-CEEEEECCCCEEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCEEEECC
T ss_conf 97998888798986665468667214-799-7799976898699995899889979997989879999786057697376
Q ss_pred -CCCCCEEEEEECCCCCEEEEEEC
Q ss_conf -35652689981577430163201
Q 001721 557 -LKDKQVKSIVCGTSFTAAICLHK 579 (1020)
Q Consensus 557 -l~~~~V~~IacG~~hT~aL~~~k 579 (1020)
+.++.|++|+||.+||++|+...
T Consensus 396 ~~~~~~v~~va~G~~ht~~l~~~~ 419 (423)
T 3mvd_K 396 NTQGKHMLLASGGGQHAIFLVKAD 419 (423)
T ss_dssp TTTTCCEEEEEECSSEEEEEEECC
T ss_pred CCCCCEEEEEEECCCCEEEEECCC
T ss_conf 647978999977888289997166
No 6
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=1.00 E-value=1 Score=514.09 Aligned_cols=331 Identities=35% Similarity=0.632 Sum_probs=311.9
Q ss_pred CCCEEEEEECCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCEEEECCCCCCEEEEEECCCEEEEEEECC-CEEEEC
Q ss_conf 8988999954867999982990999938999965789897877656850148995999994698799999089-399957
Q 001721 232 VLDVQNIACGGRHAALVTKQGEVFSWGEELGGRLGHGVDSDVSHPKLIDALKNINVELVACGEHHTCAVTLSG-DMYTWG 310 (1020)
Q Consensus 232 ~~~V~~Ia~G~~hs~~Lt~dG~VyswG~n~~GqLG~g~~~~~~~P~~V~~l~~~~I~~VacG~~ht~aLT~dG-~Vy~WG 310 (1020)
..+|++|+||..|+++|+++|+||+||.|.+||||++...+...|.++..+.+.+|++|+||.+|++||+++| +||+||
T Consensus 15 ~~~v~~ia~G~~hs~al~~~g~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~va~G~~ht~al~~~gg~v~~wG 94 (406)
T 4d9s_A 15 PRKVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGMEVYSWG 94 (406)
T ss_dssp CCCEEEEEECSSEEEEEETTTEEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTTTEEEEEE
T ss_pred CCCEEEEECCCCEEEEEEECCEEEEEECCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEECCCEEEEEECCCCEEEEEC
T ss_conf 66469996187909999829989998699998889798655738878224689978999828450899988899899975
Q ss_pred CCCCCCCCCCCCCCCCEECCEEECCCCCCCCEEEEEECCCEEEEEECCCCEEEECCCCCCCCCCCCCCCCCCCEEECCCC
Q ss_conf 99988864589898640011221799899829999866985999982992798306998757898885433561431588
Q 001721 311 GSNCNFGLLGHGNEMSLWLPKKLNGPLEGIHVSSVSCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRISVSTPREVDSLK 390 (1020)
Q Consensus 311 ~n~~~~GqLG~g~~~~~~~P~~I~~~l~~~~Iv~IAcG~~Hs~alTs~G~VytwG~N~~GQLG~g~~~~~~~P~~V~~l~ 390 (1020)
.| .+||||++.......|.++.. +.+.+|++|+||..|+++|+++|+||+||.|.+||||+++......|.++..+.
T Consensus 95 ~n--~~GqLG~g~~~~~~~p~~v~~-l~~~~i~~ia~G~~h~~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~ 171 (406)
T 4d9s_A 95 WG--DFGRLGHGNSSDLFTPLPIKA-LHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFE 171 (406)
T ss_dssp CC--GGGTTCSSSCCCEEEEEECGG-GTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEECGGGT
T ss_pred CC--CCCCCCCCCCCCCCCCEEECC-CCCCCEEEEEECHHHEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCEEECCCC
T ss_conf 99--886899899876461068414-689988999977046589738985999079987547798987755235743568
Q ss_pred CCEEEEEECCCCEEEEEEEEEECCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEECEEEECCCCCCEEEEEEECCEEEE
Q ss_conf 98099995188469999984315765433799927982289998768999875000078402579980599730858999
Q 001721 391 GLRTVRAACGVWHTAAVVEVMVGSSSSSNCSSGKLFTWGDGDRGRLGHGDKEARLVPTCVAALVEPNFCQVSCGHSLTVA 470 (1020)
Q Consensus 391 g~~I~~IAcG~~ht~aIte~~~~~~~~~~~s~G~VytWG~n~~GqLG~g~~~~~~~Pt~V~~l~~~~I~~Va~G~~htva 470 (1020)
+.+|++|+||.+|+++|+ .+|+||+||.|.+||||+++......|.++..+...+|++|+||.+|+++
T Consensus 172 ~~~i~~va~G~~hs~alt------------~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~i~~va~G~~ht~~ 239 (406)
T 4d9s_A 172 GIRIKMVAAGAEHTAAVT------------EDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTIS 239 (406)
T ss_dssp TCCEEEEEECSSEEEEEE------------TTSCEEEEECCTTSTTCSSSSCCEEEEEECCCSTTCCEEEEEECSSEEEE
T ss_pred CCCEEEEECCCCEEEEEE------------CCCCEEEEECCCCCCCCCCCCCCCCCCEEECCCCCCEEEEEEECCCCEEE
T ss_conf 973899964787399994------------79988984179888778899877686278403689629999978981899
Q ss_pred EECCCCEEEEECCCCCCCCCCCCC-CCCCEEECCCCCCCCEEEEEECCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCC
Q ss_conf 965993999919998888999999-9743353134577747999963947999967991999938999999999999865
Q 001721 471 LTTTGHVYTMGSPVYGQLGDPKAN-GKLPTRVEGKLTKNFVEEIACGDYHVAVLTSRTEVYTWGKGANGRLGHGDTDDRN 549 (1020)
Q Consensus 471 LT~dG~Vy~wGsn~~GQLG~~~~~-~~~P~~v~~~l~~~~V~~Ia~G~~Hs~aLTsdG~VytWG~n~~GQLG~Gd~~~~~ 549 (1020)
|+.+|+||+||.|.+||||.+... ...|..+.. +.+..|++|+||.+|+++|+++|+||+||.|.+||||+|+..+..
T Consensus 240 l~~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~-~~~~~v~~i~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~ 318 (406)
T 4d9s_A 240 VSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEA-LSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQC 318 (406)
T ss_dssp EETTCCEEEEECCTTSTTCSSSCCCEEEEEECGG-GTTSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSSSCEE
T ss_pred ECCCCCEEEEECCCCCCCCCCCCCCCCCCEEECC-CCCCCEEEEEECCCEEEEECCCCEEEEEECCCCCCCCCCCCCCCC
T ss_conf 9489988996389988789998767505678232-589988999846787999959990999338998888789987774
Q ss_pred CCCEEECCCCCCEEEEEECCCCCEEEEEE
Q ss_conf 67134113565268998157743016320
Q 001721 550 FPSLVEALKDKQVKSIVCGTSFTAAICLH 578 (1020)
Q Consensus 550 ~P~~V~~l~~~~V~~IacG~~hT~aL~~~ 578 (1020)
.|++|..+.+.+|++|+||.+|++||+.+
T Consensus 319 ~p~~v~~~~~~~v~~va~G~~hs~alt~~ 347 (406)
T 4d9s_A 319 SPVQVRFPDDQKVVQVSCGWRHTLAVTER 347 (406)
T ss_dssp EEEEECCGGGCCEEEEEECSSEEEEEETT
T ss_pred CCEEEECCCCCCEEEEEECCCEEEEEECC
T ss_conf 67797326798589999289949999489
No 7
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=1.00 E-value=1 Score=488.04 Aligned_cols=328 Identities=33% Similarity=0.591 Sum_probs=280.8
Q ss_pred EEEEECCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCEEEECCCCCCEEEEEECCCEEEEEEECCCEEEECCCCCC
Q ss_conf 99995486799998299099993899996578989787765685014899599999469879999908939995799988
Q 001721 236 QNIACGGRHAALVTKQGEVFSWGEELGGRLGHGVDSDVSHPKLIDALKNINVELVACGEHHTCAVTLSGDMYTWGGSNCN 315 (1020)
Q Consensus 236 ~~Ia~G~~hs~~Lt~dG~VyswG~n~~GqLG~g~~~~~~~P~~V~~l~~~~I~~VacG~~ht~aLT~dG~Vy~WG~n~~~ 315 (1020)
+++..-..+.++|+.+|+||+||.|.+||||.+...+...|++++.+...+|++|+||.+|+++|+++|+||+||.| .
T Consensus 4 ~~~~~~~~~~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~l~~~G~v~~wG~n--~ 81 (389)
T 3kci_A 4 HHHHSSGRENLYFQGSGTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGYG--A 81 (389)
T ss_dssp -----------------CEEEEEECTTSTTSSCSCSEEEEEEECHHHHHTCEEEEEEETTEEEEEETTSCEEEEECC--G
T ss_pred CCCCCCCCCCEEECCCCEEEEEECCCCCCCCCCCCCCCCCCEECCCCCCCCEEEEEECCCEEEEECCCCCEEEEECC--C
T ss_conf 44465743226688998699703899751898968664277760134678659998477739999589819998899--9
Q ss_pred CCCCCCCCCCCEECCEEECCCCCCC--CEEEEEECCCEEEEEECCCCEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCE
Q ss_conf 8645898986400112217998998--29999866985999982992798306998757898885433561431588980
Q 001721 316 FGLLGHGNEMSLWLPKKLNGPLEGI--HVSSVSCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRISVSTPREVDSLKGLR 393 (1020)
Q Consensus 316 ~GqLG~g~~~~~~~P~~I~~~l~~~--~Iv~IAcG~~Hs~alTs~G~VytwG~N~~GQLG~g~~~~~~~P~~V~~l~g~~ 393 (1020)
+||||.+.......|.++.. +.+. ++++|+||.+|+++|+++|+||+||.|.+||||+++......|+.|..+.+.+
T Consensus 82 ~GqLG~g~~~~~~~p~~v~~-~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~ 160 (389)
T 3kci_A 82 GGRLGIGGTESVSTPTLLES-IQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIE 160 (389)
T ss_dssp GGTTSSSSSCCEEEEEECGG-GTTSCEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSC
T ss_pred CCCCCCCCCCCCCCCEECCC-CCCCCEEEEEECCCCCEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCEEECCCCCCE
T ss_conf 98889899677337777110-15773259998768774999948997999729989867899875675876843668973
Q ss_pred EEEEECCCCEEEEEEEEEECCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEECEEEECCCCCCEEEEEEEC--CEEEEE
Q ss_conf 999951884699999843157654337999279822899987689998750000784025799805997308--589999
Q 001721 394 TVRAACGVWHTAAVVEVMVGSSSSSNCSSGKLFTWGDGDRGRLGHGDKEARLVPTCVAALVEPNFCQVSCGH--SLTVAL 471 (1020)
Q Consensus 394 I~~IAcG~~ht~aIte~~~~~~~~~~~s~G~VytWG~n~~GqLG~g~~~~~~~Pt~V~~l~~~~I~~Va~G~--~htvaL 471 (1020)
|++|+||.+|+++|+ .+|+||+||.|.+||||+++......|+.+..+.+.+|++|+||. .|+++|
T Consensus 161 i~~va~G~~hs~alt------------~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~g~~~t~~l 228 (389)
T 3kci_A 161 VVDVAAGGAHSACVT------------AAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCL 228 (389)
T ss_dssp EEEEEECSSEEEEEE------------TTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECCSSCEEEEE
T ss_pred EEEEEECCCEEEEEE------------CCCEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCEEEEEEECCCCCEEEEE
T ss_conf 999971758589994------------89808994899888768999866045568504589839999976898589999
Q ss_pred ECCCCEEEEECCCCCCCCCCCCCC-CCCEEECCCCCCCCEEEEEECCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 659939999199988889999999-7433531345777479999639479999679919999389999999999998656
Q 001721 472 TTTGHVYTMGSPVYGQLGDPKANG-KLPTRVEGKLTKNFVEEIACGDYHVAVLTSRTEVYTWGKGANGRLGHGDTDDRNF 550 (1020)
Q Consensus 472 T~dG~Vy~wGsn~~GQLG~~~~~~-~~P~~v~~~l~~~~V~~Ia~G~~Hs~aLTsdG~VytWG~n~~GQLG~Gd~~~~~~ 550 (1020)
+.+|+||+||.|.+||||.+.... ..|..+.. +.+..|++|+||.+|+++|+++|+||+||.|.+||||+++..+...
T Consensus 229 ~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~-~~~~~v~~v~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~ 307 (389)
T 3kci_A 229 TDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDS-LTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRR 307 (389)
T ss_dssp ETTTEEEEEECCGGGTTSSSSCCCEEEEEECGG-GTTSCEEEEEEETTEEEEEETTSCEEEEECCGGGTTCSSSCCCEEE
T ss_pred CCCCEEEEEECCCCCCCCCCCCCCCCCCEEECC-CCCCCEEEEECCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCC
T ss_conf 059979997399888779899888544679546-6899679994799879999589939998589998888999866208
Q ss_pred CCEEECCCCCCEEEEEECCCCCEEEEEEC
Q ss_conf 71341135652689981577430163201
Q 001721 551 PSLVEALKDKQVKSIVCGTSFTAAICLHK 579 (1020)
Q Consensus 551 P~~V~~l~~~~V~~IacG~~hT~aL~~~k 579 (1020)
|++|..+.+.+|++|+||.+|++||+.+.
T Consensus 308 P~~v~~l~~~~v~~ia~G~~h~~al~~~G 336 (389)
T 3kci_A 308 PRQVQGLQGKKVIAIATGSLHCVCCTEDG 336 (389)
T ss_dssp EEECGGGTTCCEEEEEECSSEEEEEETTC
T ss_pred CEEECCCCCCCEEEEEECCCEEEEECCCC
T ss_conf 75851479998899994457099998999
No 8
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=1.00 E-value=1 Score=471.18 Aligned_cols=322 Identities=24% Similarity=0.356 Sum_probs=283.3
Q ss_pred CCCEEEEEECCCEEEEEECCCEEEEEECCCCCCCCCCCC-CCCCCCEEEECCCCCCEEEEEECCCEEEEEEECCCEEEEC
Q ss_conf 898899995486799998299099993899996578989-7877656850148995999994698799999089399957
Q 001721 232 VLDVQNIACGGRHAALVTKQGEVFSWGEELGGRLGHGVD-SDVSHPKLIDALKNINVELVACGEHHTCAVTLSGDMYTWG 310 (1020)
Q Consensus 232 ~~~V~~Ia~G~~hs~~Lt~dG~VyswG~n~~GqLG~g~~-~~~~~P~~V~~l~~~~I~~VacG~~ht~aLT~dG~Vy~WG 310 (1020)
..++++|++|..|+++|+++|+||+||.|.+||||++.. .....|.+|+.+. .|++|+||.+|+++|+++|+||+||
T Consensus 23 ~~~~~~ia~g~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~l~--~v~~va~G~~h~~~l~~~G~v~~wG 100 (423)
T 3mvd_K 23 KAKRARIAFHLELPKRRTVLGNVLVCGNGDVGQLGLGEDILERKRLSPVAGIP--DAVDISAGGMHNLVLTKSGDIYSFG 100 (423)
T ss_dssp ------CCCCCCCCCCCCCCEEEEEEEECTTSTTCSCSSCCEEEEEEECCSCS--SEEEEEECSSEEEEEETTSCEEEEE
T ss_pred CCEEEEEECCCCCCEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCEECCCCC--CCEEEEECCCEEEEEECCCEEEEEE
T ss_conf 12036886377653316699719998699877789999875676876756889--8449950789489995799499867
Q ss_pred CCCCCCCCCCCCCCCC--EECCEEECCCCCCCCEEEEEECCCEEEEEECCCCEEEECC--CCCCCCCCCCCCCCCCCEEE
Q ss_conf 9998886458989864--0011221799899829999866985999982992798306--99875789888543356143
Q 001721 311 GSNCNFGLLGHGNEMS--LWLPKKLNGPLEGIHVSSVSCGPWHTAVVTSAGQLFTFGD--GTFGVLGHGDRISVSTPREV 386 (1020)
Q Consensus 311 ~n~~~~GqLG~g~~~~--~~~P~~I~~~l~~~~Iv~IAcG~~Hs~alTs~G~VytwG~--N~~GQLG~g~~~~~~~P~~V 386 (1020)
.| .+||||++.... ...|.++.. ..+|++|+||..|+++|+++|+||+||. |.+||||++.......|.++
T Consensus 101 ~n--~~GqLG~~~~~~~~~~~P~~v~~---~~~i~~va~G~~hs~al~~~G~v~~wG~~~n~~GqlG~~~~~~~~~p~~~ 175 (423)
T 3mvd_K 101 CN--DEGALGRDTSEDGSESKPDLIDL---PGKALCISAGDSHSACLLEDGRVFAWGSFRDSHGNMGLTIDGNKRTPIDL 175 (423)
T ss_dssp CC--SSSTTCSCCCSTTSSSSCEECCC---SSCEEEEEECSSEEEEEETTSCEEEEECEECSSSEEESBTTBCEEEEEES
T ss_pred CC--CCCCCCCCCCCCCCCCCCEEECC---CCCEEEEECCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCEEEEE
T ss_conf 89--98589998767865657759747---99789998486828999179969997698898998674778887234696
Q ss_pred CCCCCCEEEEEECCCCEEEEEEEEEECCCCCCCCCCCCEEEECCCCCCCCCCCCC-----------CCCEECEEEECCCC
Q ss_conf 1588980999951884699999843157654337999279822899987689998-----------75000078402579
Q 001721 387 DSLKGLRTVRAACGVWHTAAVVEVMVGSSSSSNCSSGKLFTWGDGDRGRLGHGDK-----------EARLVPTCVAALVE 455 (1020)
Q Consensus 387 ~~l~g~~I~~IAcG~~ht~aIte~~~~~~~~~~~s~G~VytWG~n~~GqLG~g~~-----------~~~~~Pt~V~~l~~ 455 (1020)
+.+.+|++|+||.+|+++|+ .+|+||+||.|.+||||++.. .....|..+..+..
T Consensus 176 --~~~~~i~~va~G~~hs~alt------------~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~p~~v~~~~~ 241 (423)
T 3mvd_K 176 --MEGTVCCSIASGADHLVILT------------TAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLIITRA 241 (423)
T ss_dssp --STTCCEEEEEECSSEEEEEE------------TTSCEEEEECCTTSTTSSCCTTTTTSCSTTTTTTTSSCEEECCTTC
T ss_pred --CCCCCEEEEECCCCEEEEEE------------CCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCC
T ss_conf --69985899953897499992------------6980999627867854777643445433345333568768840688
Q ss_pred CCEEEEEEECCEEEEE-ECCCCEEEEECCCCCCCCCCCCC-CC--CCEEECCCCCCCCEEEEEECCCEEEEEECCCEEEE
Q ss_conf 9805997308589999-65993999919998888999999-97--43353134577747999963947999967991999
Q 001721 456 PNFCQVSCGHSLTVAL-TTTGHVYTMGSPVYGQLGDPKAN-GK--LPTRVEGKLTKNFVEEIACGDYHVAVLTSRTEVYT 531 (1020)
Q Consensus 456 ~~I~~Va~G~~htvaL-T~dG~Vy~wGsn~~GQLG~~~~~-~~--~P~~v~~~l~~~~V~~Ia~G~~Hs~aLTsdG~Vyt 531 (1020)
.+|.+|+||.+|++++ +.+|.||+||.|.+||||.+... .. .|..+. ...|++|+||.+|+++|+++|+||+
T Consensus 242 ~~v~~i~~g~~~~~~~~~~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~----~~~v~~ia~G~~ht~alt~~G~v~~ 317 (423)
T 3mvd_K 242 KPFEAIWATNYCTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTE----LKDIRHIAGGQHHTVILTTDLKCSV 317 (423)
T ss_dssp CCEEEEEEETTEEEEEETTTCCEEEEEECTTCTTSSCCTTCSEEEEEEEEC----CCSEEEEEECSSEEEEEETTCCEEE
T ss_pred CCEEEEEECCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCEEEEEEECC----CCCEEEEECCCCEEEEEECCCCEEE
T ss_conf 627999979967999988999499974999876799998874146448707----8874899724676999958993999
Q ss_pred EECCCCCCCCCCCCCC-CCCCCEEECCCCCCEEEEEECCCCCEEEEEEC
Q ss_conf 9389999999999998-65671341135652689981577430163201
Q 001721 532 WGKGANGRLGHGDTDD-RNFPSLVEALKDKQVKSIVCGTSFTAAICLHK 579 (1020)
Q Consensus 532 WG~n~~GQLG~Gd~~~-~~~P~~V~~l~~~~V~~IacG~~hT~aL~~~k 579 (1020)
||.|.+||||+|+..+ ...|++|+.+.+ .|++|+||.+|++||+.+.
T Consensus 318 wG~n~~GqLG~g~~~~~~~~p~~v~~l~~-~v~~ia~G~~hs~alt~~G 365 (423)
T 3mvd_K 318 VGRPEYGRLGLGDVKDVVEKPTIVKKLTE-KIVSVGCGEVCSYAVTIDG 365 (423)
T ss_dssp EECCGGGTTCSSSCCSCEEEEEECTTCCS-CEEEEEEETTEEEEEETTS
T ss_pred EECCCCCCCCCCCCCCCCCCCEEECCCCC-CEEEEECCCCEEEEECCCC
T ss_conf 97998888798986665468667214799-7799976898699995899
No 9
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=470.77 Aligned_cols=325 Identities=23% Similarity=0.373 Sum_probs=243.7
Q ss_pred CEEEEEECCCEEEEEECCCEEEEEECCCCCCCCCCCC---CCCCCCEEEECC--CCCCEEEEEECCCEEEEEEECCCEEE
Q ss_conf 8899995486799998299099993899996578989---787765685014--89959999946987999990893999
Q 001721 234 DVQNIACGGRHAALVTKQGEVFSWGEELGGRLGHGVD---SDVSHPKLIDAL--KNINVELVACGEHHTCAVTLSGDMYT 308 (1020)
Q Consensus 234 ~V~~Ia~G~~hs~~Lt~dG~VyswG~n~~GqLG~g~~---~~~~~P~~V~~l--~~~~I~~VacG~~ht~aLT~dG~Vy~ 308 (1020)
.|....++..|+++++++|+||+||.|.+||||+|.. .+...|.+++.+ ...+|++|+||.+|++||+++|+||+
T Consensus 11 ~~~~~~~~~~h~~~~~~~g~v~~wG~n~~GqLG~G~~~~~~~~~~P~~~~~~~~~~~~i~~va~G~~Ht~alt~~G~v~~ 90 (473)
T 3of7_A 11 HIINAQEDYKHMYLSVQPLDIFCWGTGSMCELGLGPLAKNKEVKRPRLNPFLPRDEAKIISFAVGGMHTLALDEESNVWS 90 (473)
T ss_dssp TCCCCGGGGHHHHCCSSCCEEEEEEECTTSTTCSCSCGGGGEEEEEEECTTSCTTTTCEEEEEECSSEEEEEETTCCEEE
T ss_pred HHHHHCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEECCCEEEE
T ss_conf 66552134201026788765899818988736989776664455762155455577878999707876999916984999
Q ss_pred ECCCCCCCCCCCCCCCCC-----------------------EECCEEECC--CC---CCCCEEEEEECCCEEEEEECCCC
Q ss_conf 579998886458989864-----------------------001122179--98---99829999866985999982992
Q 001721 309 WGGSNCNFGLLGHGNEMS-----------------------LWLPKKLNG--PL---EGIHVSSVSCGPWHTAVVTSAGQ 360 (1020)
Q Consensus 309 WG~n~~~~GqLG~g~~~~-----------------------~~~P~~I~~--~l---~~~~Iv~IAcG~~Hs~alTs~G~ 360 (1020)
||.| .+||||.+.... ...|.+|.. .. ++.+|++|+||.+|+++|+++|+
T Consensus 91 wG~n--~~GqLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~l~~~~~~~~i~~va~G~~hs~alt~~G~ 168 (473)
T 3of7_A 91 WGCN--DVGALGRDTSNAKEQLKDMDADDSSDDEDGDLNELESTPAKIPRESFPPLAEGHKVVQLAATDNMSCALFSNGE 168 (473)
T ss_dssp EECC--TTSTTCSCCC---------------------CCHHHHSCEECCGGGCHHHHTTCCEEEEEECSSEEEEEETTSC
T ss_pred EECC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCEEEEECCCCEEEEEECCCE
T ss_conf 6899--88889998865333323456555675433444633467501343457754589818999826887999948984
Q ss_pred EEEECC--CCCCCCCCCCC--CCCCCCEEECCCCCCEEEEEECCCCEEEEEEEEEECCCCCCCCCCCCEEEECCCCCCCC
Q ss_conf 798306--99875789888--54335614315889809999518846999998431576543379992798228999876
Q 001721 361 LFTFGD--GTFGVLGHGDR--ISVSTPREVDSLKGLRTVRAACGVWHTAAVVEVMVGSSSSSNCSSGKLFTWGDGDRGRL 436 (1020)
Q Consensus 361 VytwG~--N~~GQLG~g~~--~~~~~P~~V~~l~g~~I~~IAcG~~ht~aIte~~~~~~~~~~~s~G~VytWG~n~~GqL 436 (1020)
||+||. |.+||||++.. .....|.+|..+.+.+|++|+||..|++||+ .+|+||+||.|.+|||
T Consensus 169 vy~wG~n~~~~GqLG~~~~~~~~~~~P~~v~~l~~~~i~~va~G~~hs~alt------------~~G~v~~wG~n~~GqL 236 (473)
T 3of7_A 169 VYAWGTFRCNEGILGFYQDKIKIQKTPWKVPTFSKYNIVQLAPGKDHILFLD------------EEGMVFAWGNGQQNQL 236 (473)
T ss_dssp EEEEECEEETTEEEESBTTTBSCEEEEEECCCCCSSCEEEEEECSSEEEEEE------------TTSCEEEEECCTTSTT
T ss_pred EEEEECCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCEEEEEECCCEEEEEE------------CCCEEEEEECCCCCCC
T ss_conf 9994699689875488887774144767755247888799996378389991------------7992999769988888
Q ss_pred CCCCCCC----CEECEEEECCCCCCEEEEEEECCEEEEEECCCCEEEEECCCCCCCCCCCCCC-----CCCEEECCCCCC
Q ss_conf 8999875----0000784025799805997308589999659939999199988889999999-----743353134577
Q 001721 437 GHGDKEA----RLVPTCVAALVEPNFCQVSCGHSLTVALTTTGHVYTMGSPVYGQLGDPKANG-----KLPTRVEGKLTK 507 (1020)
Q Consensus 437 G~g~~~~----~~~Pt~V~~l~~~~I~~Va~G~~htvaLT~dG~Vy~wGsn~~GQLG~~~~~~-----~~P~~v~~~l~~ 507 (1020)
|++.... ...|..+.. .+|++|+||.+|++||+.+|+||+||.|.+||||.+.... ..|..+.. +.+
T Consensus 237 G~~~~~~~~~~~~~p~~~~~---~~v~~Ia~G~~hs~alt~~G~v~~wG~n~~GqlG~~~~~~~~~~~~~P~~v~~-~~~ 312 (473)
T 3of7_A 237 GRKVMERFRLKTLDPRPFGL---RHVKYIASGENHCFALTKDNKLVSWGLNQFGQCGVSEDVEDGALVTKPKRLAL-PDN 312 (473)
T ss_dssp SSCCCGGGTTTTCSCEECSC---CSEEEEEECSSEEEEEETTSCEEEEEECTTSTTCCCSCCCTTCEEEEEEECCC-CTT
T ss_pred CCCCCCCCCCCCCCCEECCC---CCEEEEECCCCEEEEEECCCCEEEECCCCCCCCCCCCCCCCCCEEECCCCCCC-CCC
T ss_conf 98844543335437521277---66389954897589991699889937898988588876568844541321255-678
Q ss_pred CCEEEEEECCCEEEEEECCCEEEEEECCCCCCCCCCCCC--------------CCCCCCEEECCCCCCEEEEEECCCCCE
Q ss_conf 747999963947999967991999938999999999999--------------865671341135652689981577430
Q 001721 508 NFVEEIACGDYHVAVLTSRTEVYTWGKGANGRLGHGDTD--------------DRNFPSLVEALKDKQVKSIVCGTSFTA 573 (1020)
Q Consensus 508 ~~V~~Ia~G~~Hs~aLTsdG~VytWG~n~~GQLG~Gd~~--------------~~~~P~~V~~l~~~~V~~IacG~~hT~ 573 (1020)
..|++|+||.+|+++|+++|+||+||.|.+||||++... ....|+.|+.+. .|++|+||.+|++
T Consensus 313 ~~i~~ia~G~~hs~~lt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~--~v~~Ia~G~~hs~ 390 (473)
T 3of7_A 313 VVIRSIAAGEHHSLILSQDGDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGKARAVPLPTKLNNVP--KFKSVAAGSHHSV 390 (473)
T ss_dssp CCEEEEEECSSEEEEEETTSCEEEEEECTTCTTCCCGGGCCTTCEECTTSCEEEEEEEEECCSSC--CEEEEEECSSEEE
T ss_pred CCEEEEEECCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCC--CEEEEEECCCEEE
T ss_conf 63899986788699993898299987899874188844466531004578602621670047877--5379985787699
Q ss_pred EEEEE
Q ss_conf 16320
Q 001721 574 AICLH 578 (1020)
Q Consensus 574 aL~~~ 578 (1020)
||+.+
T Consensus 391 al~~~ 395 (473)
T 3of7_A 391 AVAQN 395 (473)
T ss_dssp EEETT
T ss_pred EEECC
T ss_conf 99689
No 10
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Probab=1.00 E-value=1 Score=458.66 Aligned_cols=318 Identities=30% Similarity=0.501 Sum_probs=216.3
Q ss_pred EEEECCCEEEEEECCCEEEEEECCCCCCCCCCCCCC-CCCCEEEECCCCCCEEEEEECCCEEEEEEECCCEEEECCCCCC
Q ss_conf 999548679999829909999389999657898978-7765685014899599999469879999908939995799988
Q 001721 237 NIACGGRHAALVTKQGEVFSWGEELGGRLGHGVDSD-VSHPKLIDALKNINVELVACGEHHTCAVTLSGDMYTWGGSNCN 315 (1020)
Q Consensus 237 ~Ia~G~~hs~~Lt~dG~VyswG~n~~GqLG~g~~~~-~~~P~~V~~l~~~~I~~VacG~~ht~aLT~dG~Vy~WG~n~~~ 315 (1020)
.++.+..|+++|+.+|+||+||.|.+||||++.... ...|++|..+ .+|++|+||.+|+++|+++|+||+||.| .
T Consensus 12 ~~~~~~~h~~~l~~~g~v~~wG~n~~GqLG~g~~~~~~~~P~~v~~~--~~i~~va~G~~hs~~l~~~G~v~~wG~n--~ 87 (413)
T 1a12_A 12 SKKVKVSHRSHSTEPGLVLTLGQGDVGQLGLGENVMERKKPALVSIP--EDVVQAEAGGMHTVCLSKSGQVYSFGCN--D 87 (413)
T ss_dssp -CCCCCCCTTCCCCCBEEEEEEECTTSTTCSCTTCCEEEEEEEECCS--SCEEEEEECSSEEEEEETTSCEEEEECC--T
T ss_pred HHHHCCCCCEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCEECCCC--CCEEEEEECCCEEEEECCCCCEEEEECC--C
T ss_conf 34420442040068986899778989837989986430465671688--9869998677758999479989998899--9
Q ss_pred CCCCCCCCC--CCEECCEEECCCCCCCCEEEEEECCCEEEEEECCCCEEEECC--CCCCCCCCCCCCCC-CCCEEECCCC
Q ss_conf 864589898--640011221799899829999866985999982992798306--99875789888543-3561431588
Q 001721 316 FGLLGHGNE--MSLWLPKKLNGPLEGIHVSSVSCGPWHTAVVTSAGQLFTFGD--GTFGVLGHGDRISV-STPREVDSLK 390 (1020)
Q Consensus 316 ~GqLG~g~~--~~~~~P~~I~~~l~~~~Iv~IAcG~~Hs~alTs~G~VytwG~--N~~GQLG~g~~~~~-~~P~~V~~l~ 390 (1020)
+||||++.. .....|.++. +. .+|++|+||.+|+++|+++|+||+||. |.+||||+++.... ..|.+| +.
T Consensus 88 ~GqLG~~~~~~~~~~~P~~v~--l~-~~i~~va~G~~hs~alt~~G~v~~wG~~~n~~GqlG~~~~~~~~~~P~~v--~~ 162 (413)
T 1a12_A 88 EGALGRDTSVEGSEMVPGKVE--LQ-EKVVQVSAGDSHTAALTDDGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQV--QL 162 (413)
T ss_dssp TSTTCSCCCSTTGGGSCEECC--CC-SCEEEEEECSSEEEEEETTSCEEEEECEEETTEEEESSBBTBCEEEEEEE--CC
T ss_pred CCCCCCCCCCCCCCCCCEEEC--CC-CCEEEEECCCCEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEE--CC
T ss_conf 887798888875345874753--88-75899966887379984899489943776899863767866446678796--18
Q ss_pred CCEEEEEECCCCEEEEEEEEEECCCCCCCCCCCCEEEECCCCCCCCCCCCCC-----------CCEECEEEECC-----C
Q ss_conf 9809999518846999998431576543379992798228999876899987-----------50000784025-----7
Q 001721 391 GLRTVRAACGVWHTAAVVEVMVGSSSSSNCSSGKLFTWGDGDRGRLGHGDKE-----------ARLVPTCVAAL-----V 454 (1020)
Q Consensus 391 g~~I~~IAcG~~ht~aIte~~~~~~~~~~~s~G~VytWG~n~~GqLG~g~~~-----------~~~~Pt~V~~l-----~ 454 (1020)
..+|++|+||.+|+++|+ .+|+||+||.|.+||||++... ....|+.+... .
T Consensus 163 ~~~i~~ia~G~~hs~alt------------~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~P~~v~~~~~g~~~ 230 (413)
T 1a12_A 163 DVPVVKVASGNDHLVMLT------------ADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRG 230 (413)
T ss_dssp SSCEEEEEECSSEEEEEE------------TTSCEEEEECCTTSTTCSCGGGTSSSCGGGGHHHHHSCEECCCBCSSCCS
T ss_pred CCCEEEEEECCCEEEEEC------------CCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCC
T ss_conf 997799984676189985------------89988983389888668875333455554553224467457631456667
Q ss_pred CCCEEEEEEECCEEEEEECCCCEEEEECCCCCCCCCCCCCC-CCCEEECCCCCC--CCEEEEEECCCEEEEEECCCEEEE
Q ss_conf 99805997308589999659939999199988889999999-743353134577--747999963947999967991999
Q 001721 455 EPNFCQVSCGHSLTVALTTTGHVYTMGSPVYGQLGDPKANG-KLPTRVEGKLTK--NFVEEIACGDYHVAVLTSRTEVYT 531 (1020)
Q Consensus 455 ~~~I~~Va~G~~htvaLT~dG~Vy~wGsn~~GQLG~~~~~~-~~P~~v~~~l~~--~~V~~Ia~G~~Hs~aLTsdG~Vyt 531 (1020)
..+|++|+||.+|+++|+.+|+||+||.|.+||||.+.... ..|..+.. +.+ ..|++|+||.+|+++|+++|+||+
T Consensus 231 ~~~i~~ia~G~~hs~alt~~G~v~~wG~n~~gqLG~~~~~~~~~P~~v~~-l~~~~~~v~~ia~G~~hs~al~~~G~v~~ 309 (413)
T 1a12_A 231 HVRFQDAFCGAYFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTS-FKNSTKSWVGFSGGQHHTVCMDSEGKAYS 309 (413)
T ss_dssp BCCEEEEEEETTEEEEEETTCCEEEEECCTTSTTSCSSCSCEEEEEECGG-GCCTTCCEEEEEECSSEEEEEETTSCEEE
T ss_pred CCCEEEEEECCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCEECHH-CCCCCCEEEEEECCCCEEEEEECCCCEEE
T ss_conf 85489997078879999689979998499876777999876356677010-15887329999505245899907998998
Q ss_pred EECCCCCCCCCC-CCCCCCCCCEEECCCCCCEEEEEECCCCCEEEEEE
Q ss_conf 938999999999-99986567134113565268998157743016320
Q 001721 532 WGKGANGRLGHG-DTDDRNFPSLVEALKDKQVKSIVCGTSFTAAICLH 578 (1020)
Q Consensus 532 WG~n~~GQLG~G-d~~~~~~P~~V~~l~~~~V~~IacG~~hT~aL~~~ 578 (1020)
||.|.+||||+| +..+...|++|+.+. .|++|+||.+|++||+.+
T Consensus 310 wG~n~~GqLG~g~~~~~~~~P~~v~~l~--~v~~v~~G~~hs~alt~~ 355 (413)
T 1a12_A 310 LGRAEYGRLGLGEGAEEKSIPTLISRLP--AVSSVACGASVGYAVTKD 355 (413)
T ss_dssp EECCGGGTTCSCTTCCCEEEEEECCSSS--SEEEEEECSSEEEEEETT
T ss_pred EECCCCCCCCCCCCCCCCCCCEEECCCC--CEEEEEECCCEEEEEECC
T ss_conf 6489888668999886366777922667--625999775647999489
Done!