BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001722
(1020 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3KX2|B Chain B, Crystal Structure Of Prp43p In Complex With Adp
pdb|3KX2|A Chain A, Crystal Structure Of Prp43p In Complex With Adp
Length = 767
Score = 539 bits (1388), Expect = e-153, Method: Compositional matrix adjust.
Identities = 275/646 (42%), Positives = 403/646 (62%), Gaps = 21/646 (3%)
Query: 319 RQYLPIFSVRDELLQVIRENQXXXXXGETGSGKTTQLTQYLLED--GYTTNGIVGCTQPR 376
R+ LP+ + RDE L++ + NQ GETGSGKTTQ+ Q++L D + N V CTQPR
Sbjct: 90 RRELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACTQPR 149
Query: 377 RVAAMSVAKRVSEEMDTELGDKVGYAIRFEDVTGPSTLIKYMTDGVLLRETLKDSDLDKY 436
RVAAMSVA+RV+EEMD +LG++VGY+IRFE+ T T++KYMTDG+LLRE ++D DL +Y
Sbjct: 150 RVAAMSVAQRVAEEMDVKLGEEVGYSIRFENKTSNKTILKYMTDGMLLREAMEDHDLSRY 209
Query: 437 RVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTSATLNAQKFSDFFGSVPIFHIPG 496
I++DEAHER+L+TD+L G+LK+VV RR D K+I+ SATL+A+KF +F P+ +PG
Sbjct: 210 SCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQRYFNDAPLLAVPG 269
Query: 497 RTFPVNTLYSKTPCEDYVEAAVKQAMTIHITSPPGDILIFMTGQDEIEAACFALKERMEQ 556
RT+PV Y+ DY+++A++ + IH T GDIL+F+TG+DEIE A + +Q
Sbjct: 270 RTYPVELYYTPEFQRDYLDSAIRTVLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQ 329
Query: 557 LISSTTREVPELLILPIYSQLPADLQAKIFEKAKEG-----TRKCIVATNIAETSLTVDG 611
L+ L + P+Y LP Q +IFE A E RK +++TNIAETSLT+DG
Sbjct: 330 LVREEG--CGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTNIAETSLTIDG 387
Query: 612 IFYVIDTGYGKMKVYNPKMGMDALQVFPVSXXXXXXXXXXXXXXXXXXCYRLYTESAYLN 671
I YV+D G+ K KVYNP++ +++L V P+S C+RLYTE A+
Sbjct: 388 IVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEEAFQK 447
Query: 672 EMLPSPVPEIQRTNLGNVVXXXXXXXXXXXXXFDFMDPPPQENILNSMYQLWVLGALNNV 731
E++ PEI R+NL + V FDFMDPP E ++ ++ +L L L++
Sbjct: 448 ELIEQSYPEILRSNLSSTVLELKKLGIDDLVHFDFMDPPAPETMMRALEELNYLACLDDE 507
Query: 732 GALTDLGWKMVEFPLDPPLAKMLLMGEQLGCLDEVLTIVSMLSVPSVFFRPKDRAEESDA 791
G LT LG +FPLDP LA ML+ + C E+LTIV+MLSVP+VF RP + +D
Sbjct: 508 GNLTPLGRLASQFPLDPMLAVMLIGSFEFQCSQEILTIVAMLSVPNVFIRPTKDKKRADD 567
Query: 792 AREKFFVQESDHLTLLYVYQQWKE---HQYR-GDWCEEHYLHVKSLRKAREVRSQLLDIL 847
A+ F + DH+TLL VY +K ++Y WC +HYL+ +SL A +RSQL ++
Sbjct: 568 AKNIFAHPDGDHITLLNVYHAFKSDEAYEYGIHKWCRDHYLNYRSLSAADNIRSQLERLM 627
Query: 848 KTLKIPLTSSGHD----FDVVRKAICSAYFHNAARLK-GVGEYINCRNGMPCHLHPSSAI 902
+ L ++ ++ FD +RKA+ S +F A+ + G YI ++ +HPS+
Sbjct: 628 NRYNLELNTTDYESPKYFDNIRKALASGFFMQVAKKRSGAKGYITVKDNQDVLIHPSTV- 686
Query: 903 YGLGYTPEYVVYHELILTTKEYMQCATAVEPQWLSELGPMFFSVKD 948
LG+ E+V+Y+E +LT+K Y++ T+V P+WL E+ P ++ + +
Sbjct: 687 --LGHDAEWVIYNEFVLTSKNYIRTVTSVRPEWLIEIAPAYYDLSN 730
>pdb|2XAU|A Chain A, Crystal Structure Of The Prp43p Deah-Box Rna Helicase In
Complex With Adp
pdb|2XAU|B Chain B, Crystal Structure Of The Prp43p Deah-Box Rna Helicase In
Complex With Adp
Length = 773
Score = 539 bits (1388), Expect = e-153, Method: Compositional matrix adjust.
Identities = 275/646 (42%), Positives = 403/646 (62%), Gaps = 21/646 (3%)
Query: 319 RQYLPIFSVRDELLQVIRENQXXXXXGETGSGKTTQLTQYLLED--GYTTNGIVGCTQPR 376
R+ LP+ + RDE L++ + NQ GETGSGKTTQ+ Q++L D + N V CTQPR
Sbjct: 90 RRELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACTQPR 149
Query: 377 RVAAMSVAKRVSEEMDTELGDKVGYAIRFEDVTGPSTLIKYMTDGVLLRETLKDSDLDKY 436
RVAAMSVA+RV+EEMD +LG++VGY+IRFE+ T T++KYMTDG+LLRE ++D DL +Y
Sbjct: 150 RVAAMSVAQRVAEEMDVKLGEEVGYSIRFENKTSNKTILKYMTDGMLLREAMEDHDLSRY 209
Query: 437 RVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTSATLNAQKFSDFFGSVPIFHIPG 496
I++DEAHER+L+TD+L G+LK+VV RR D K+I+ SATL+A+KF +F P+ +PG
Sbjct: 210 SCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQRYFNDAPLLAVPG 269
Query: 497 RTFPVNTLYSKTPCEDYVEAAVKQAMTIHITSPPGDILIFMTGQDEIEAACFALKERMEQ 556
RT+PV Y+ DY+++A++ + IH T GDIL+F+TG+DEIE A + +Q
Sbjct: 270 RTYPVELYYTPEFQRDYLDSAIRTVLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQ 329
Query: 557 LISSTTREVPELLILPIYSQLPADLQAKIFEKAKEG-----TRKCIVATNIAETSLTVDG 611
L+ L + P+Y LP Q +IFE A E RK +++TNIAETSLT+DG
Sbjct: 330 LVREEG--CGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTNIAETSLTIDG 387
Query: 612 IFYVIDTGYGKMKVYNPKMGMDALQVFPVSXXXXXXXXXXXXXXXXXXCYRLYTESAYLN 671
I YV+D G+ K KVYNP++ +++L V P+S C+RLYTE A+
Sbjct: 388 IVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEEAFQK 447
Query: 672 EMLPSPVPEIQRTNLGNVVXXXXXXXXXXXXXFDFMDPPPQENILNSMYQLWVLGALNNV 731
E++ PEI R+NL + V FDFMDPP E ++ ++ +L L L++
Sbjct: 448 ELIEQSYPEILRSNLSSTVLELKKLGIDDLVHFDFMDPPAPETMMRALEELNYLACLDDE 507
Query: 732 GALTDLGWKMVEFPLDPPLAKMLLMGEQLGCLDEVLTIVSMLSVPSVFFRPKDRAEESDA 791
G LT LG +FPLDP LA ML+ + C E+LTIV+MLSVP+VF RP + +D
Sbjct: 508 GNLTPLGRLASQFPLDPMLAVMLIGSFEFQCSQEILTIVAMLSVPNVFIRPTKDKKRADD 567
Query: 792 AREKFFVQESDHLTLLYVYQQWKE---HQYR-GDWCEEHYLHVKSLRKAREVRSQLLDIL 847
A+ F + DH+TLL VY +K ++Y WC +HYL+ +SL A +RSQL ++
Sbjct: 568 AKNIFAHPDGDHITLLNVYHAFKSDEAYEYGIHKWCRDHYLNYRSLSAADNIRSQLERLM 627
Query: 848 KTLKIPLTSSGHD----FDVVRKAICSAYFHNAARLK-GVGEYINCRNGMPCHLHPSSAI 902
+ L ++ ++ FD +RKA+ S +F A+ + G YI ++ +HPS+
Sbjct: 628 NRYNLELNTTDYESPKYFDNIRKALASGFFMQVAKKRSGAKGYITVKDNQDVLIHPSTV- 686
Query: 903 YGLGYTPEYVVYHELILTTKEYMQCATAVEPQWLSELGPMFFSVKD 948
LG+ E+V+Y+E +LT+K Y++ T+V P+WL E+ P ++ + +
Sbjct: 687 --LGHDAEWVIYNEFVLTSKNYIRTVTSVRPEWLIEIAPAYYDLSN 730
>pdb|3I4U|A Chain A, Crystal Structure Analysis Of A Helicase Associated Domain
Length = 270
Score = 233 bits (594), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 113/240 (47%), Positives = 159/240 (66%), Gaps = 2/240 (0%)
Query: 711 PQENILNSMYQLWVLGALNNVGALTDLGWKMVEFPLDPPLAKMLLMGEQLGCLDEVLTIV 770
P E ++ +M QL+ LGAL++ G LT LG +M EFPL+P L KML+M LGC +E+LTIV
Sbjct: 16 PMETLITAMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTIV 75
Query: 771 SMLSVPSVFFRPKDRAEESDAAREKFFVQESDHLTLLYVYQQWKEHQYRGDWCEEHYLHV 830
SMLSV +VF+RPKD+ +D + KF E DHLTLL VY WK +++ WC E+++
Sbjct: 76 SMLSVQNVFYRPKDKQALADQKKAKFHQTEGDHLTLLAVYNSWKNNKFSNPWCYENFIQA 135
Query: 831 KSLRKAREVRSQLLDILKTLKIPLTSSGHDFDVVRKAICSAYFHNAARLKGVGEYINCRN 890
+SLR+A+++R Q+L I+ K+ + S G V+KAICS +F NAA+ Y +
Sbjct: 136 RSLRRAQDIRKQMLGIMDRHKLDVVSCGKSTVRVQKAICSGFFRNAAKKDPQEGYRTLID 195
Query: 891 GMPCHLHPSSAIYGLGYTPEYVVYHELILTTKEYMQCATAVEPQWLSELGPMFFSVKDSD 950
++HPSSA++ PE+VVYHEL+LTTKEYM+ T ++P+WL E P FF V + D
Sbjct: 196 QQVVYIHPSSALF--NRQPEWVVYHELVLTTKEYMREVTTIDPRWLVEFAPAFFKVLEVD 253
>pdb|3LLM|A Chain A, Crystal Structure Analysis Of A Rna Helicase
pdb|3LLM|B Chain B, Crystal Structure Analysis Of A Rna Helicase
Length = 235
Score = 119 bits (299), Expect = 7e-27, Method: Composition-based stats.
Identities = 64/187 (34%), Positives = 109/187 (58%), Gaps = 7/187 (3%)
Query: 313 KTLAEQRQYLPIFSVRDELLQVIRENQXXXXXGETGSGKTTQLTQYLLEDGYTTNGIVGC 372
+ + ++R+ LP+ E+L+ I +N G TG GKTTQ+ Q++L+D + C
Sbjct: 51 QAILQERELLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAEC 110
Query: 373 ----TQPRRVAAMSVAKRVSEEMDTELGDKVGYAIRFEDVTG-PSTLIKYMTDGVLLRET 427
TQPRR++A+SVA+RV+ E E G GY++RFE + P I + T GVLLR+
Sbjct: 111 NIVVTQPRRISAVSVAERVAFERGEEPGKSCGYSVRFESILPRPHASIXFCTVGVLLRKL 170
Query: 428 LKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTSATLNAQKFSDFFG 487
++ + +++DE HER ++TD L +L+ VV + ++++ SAT++ F ++F
Sbjct: 171 --EAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPEVRIVLXSATIDTSXFCEYFF 228
Query: 488 SVPIFHI 494
+ PI +
Sbjct: 229 NCPIIEV 235
>pdb|2W4A|M Chain M, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W4G|M Chain M, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Stretch Step
pdb|2W4H|M Chain M, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Release Step
Length = 840
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 8/52 (15%)
Query: 316 AEQRQYLP--IFSVRDELLQVI---RENQXXXXXGETGSGKTT---QLTQYL 359
++RQ P IFS+ D Q + RENQ GE+G+GKT ++ QY
Sbjct: 142 GKKRQEAPPHIFSISDNAYQFMLTDRENQSILITGESGAGKTVNTKRVIQYF 193
>pdb|2MYS|A Chain A, Myosin Subfragment-1, Alpha Carbon Coordinates Only For
The Two Light Chains
Length = 843
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
Query: 316 AEQRQYLP--IFSVRDELLQVI---RENQXXXXXGETGSGKTTQ 354
++RQ P IFS+ D Q + RENQ GE+G+GKT
Sbjct: 145 GKKRQEAPPHIFSISDNAYQFMLTDRENQSILITGESGAGKTVN 188
>pdb|1M8Q|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|S Chain S, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
Length = 840
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
Query: 316 AEQRQYLP--IFSVRDELLQVI---RENQXXXXXGETGSGKTTQ 354
++RQ P IFS+ D Q + RENQ GE+G+GKT
Sbjct: 142 GKKRQEAPPHIFSISDNAYQFMLTDRENQSILITGESGAGKTVN 185
>pdb|1F9A|A Chain A, Crystal Structure Analysis Of Nmn Adenylyltransferase From
Methanococcus Jannaschii
pdb|1F9A|B Chain B, Crystal Structure Analysis Of Nmn Adenylyltransferase From
Methanococcus Jannaschii
pdb|1F9A|C Chain C, Crystal Structure Analysis Of Nmn Adenylyltransferase From
Methanococcus Jannaschii
pdb|1F9A|D Chain D, Crystal Structure Analysis Of Nmn Adenylyltransferase From
Methanococcus Jannaschii
pdb|1F9A|E Chain E, Crystal Structure Analysis Of Nmn Adenylyltransferase From
Methanococcus Jannaschii
pdb|1F9A|F Chain F, Crystal Structure Analysis Of Nmn Adenylyltransferase From
Methanococcus Jannaschii
Length = 168
Score = 30.8 bits (68), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 40/74 (54%), Gaps = 4/74 (5%)
Query: 369 IVGCTQPRRVAAMSVAKRVSEEMDTELGDKVGYAIRFEDVTGPSTLIKYMTDGVLLRETL 428
I+G QP + V K+++EE+D E+ +G A + + P T + + +++ ++L
Sbjct: 5 IIGRFQPFHKGHLEVIKKIAEEVD-EIIIGIGSAQKSHTLENPFTAGERI---LMITQSL 60
Query: 429 KDSDLDKYRVIVMD 442
KD DL Y + + D
Sbjct: 61 KDYDLTYYPIPIKD 74
>pdb|1GFF|2 Chain 2, The Atomic Structure Of The Degraded Procapsid Particle Of
The Bacteriophage G4: Induced Structural Changes In The
Presence Of Calcium Ions And Functional Implications
Length = 177
Score = 30.4 bits (67), Expect = 5.3, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 6/87 (6%)
Query: 373 TQPRRVAAMSVAKRVSEEMDTELGDKVGYAIRFEDVTGP-STLIKYMTDGVLLRETLKDS 431
T P A+S+A +S D + +AIRFE G T + + D V ET +
Sbjct: 65 TNPTNHHALSIAGSLSNVP----ADMIAFAIRFEVADGVVPTAVPALYD-VYPIETFNNG 119
Query: 432 DLDKYRVIVMDEAHERSLSTDVLFGIL 458
++ V ++H R++ DV GI+
Sbjct: 120 KAISFKDAVTIDSHPRTVGNDVYAGIM 146
>pdb|3F72|A Chain A, Crystal Structure Of The Staphylococcus Aureus Pi258 Cadc
Metal Binding Site 2 Mutant
pdb|3F72|B Chain B, Crystal Structure Of The Staphylococcus Aureus Pi258 Cadc
Metal Binding Site 2 Mutant
pdb|3F72|C Chain C, Crystal Structure Of The Staphylococcus Aureus Pi258 Cadc
Metal Binding Site 2 Mutant
pdb|3F72|D Chain D, Crystal Structure Of The Staphylococcus Aureus Pi258 Cadc
Metal Binding Site 2 Mutant
pdb|3F72|E Chain E, Crystal Structure Of The Staphylococcus Aureus Pi258 Cadc
Metal Binding Site 2 Mutant
pdb|3F72|F Chain F, Crystal Structure Of The Staphylococcus Aureus Pi258 Cadc
Metal Binding Site 2 Mutant
Length = 122
Score = 30.4 bits (67), Expect = 5.5, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 4/83 (4%)
Query: 224 TSDMAIISRKGSALVREIREKQTQNKSRQRFWELAGSQMGNILGVKKTAEQVDADTAVVG 283
T D++ +S+ A+ E R K T + EL + NILGV T +
Sbjct: 26 TVDISGVSQILKAIADENRAKITYALCQDE--ELCVCDIANILGV--TIANASHHLRTLY 81
Query: 284 EQGEIDFREDAKFSQHMKKGEAV 306
+QG ++FR++ K + + GEA+
Sbjct: 82 KQGVVNFRKEGKLALYSLGGEAI 104
>pdb|2Z83|A Chain A, Crystal Structure Of Catalytic Domain Of Japanese
Encephalitis Virus Ns3 HelicaseNUCLEOSIDE TRIPHOSPHATASE
At A Resolution 1.8
Length = 459
Score = 30.0 bits (66), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 26/118 (22%), Positives = 48/118 (40%), Gaps = 16/118 (13%)
Query: 333 QVIRENQXXXXXGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMD 392
++R+ Q GSGKT ++ +++D Q R A ++ + V+ EM
Sbjct: 16 NMLRKRQMTVLDLHPGSGKTRKILPQIIKD--------AIQQRLRTAVLAPTRVVAAEMA 67
Query: 393 TELGDKVGYAIRFEDVT-----GPSTLIKYMTDGVLLRETLKDSDLDKYRVIVMDEAH 445
L G +R++ + ++ M L + + + Y + VMDEAH
Sbjct: 68 EAL---RGLPVRYQTSAVQREHQGNEIVDVMCHATLTHRLMSPNRVPNYNLFVMDEAH 122
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,419,742
Number of Sequences: 62578
Number of extensions: 1074965
Number of successful extensions: 2982
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 2959
Number of HSP's gapped (non-prelim): 24
length of query: 1020
length of database: 14,973,337
effective HSP length: 109
effective length of query: 911
effective length of database: 8,152,335
effective search space: 7426777185
effective search space used: 7426777185
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)