Query 001722
Match_columns 1020
No_of_seqs 717 out of 3691
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 07:46:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001722.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001722hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0924 mRNA splicing factor A 100.0 8E-219 2E-223 1829.3 64.4 953 10-1018 88-1042(1042)
2 KOG0923 mRNA splicing factor A 100.0 4E-162 9E-167 1369.1 51.3 634 311-950 253-888 (902)
3 KOG0922 DEAH-box RNA helicase 100.0 1E-159 3E-164 1370.1 56.1 630 311-949 39-671 (674)
4 KOG0925 mRNA splicing factor A 100.0 2E-148 3E-153 1224.3 51.5 631 310-952 34-674 (699)
5 PRK11131 ATP-dependent RNA hel 100.0 3E-123 6E-128 1159.5 63.6 616 316-948 67-700 (1294)
6 COG1643 HrpA HrpA-like helicas 100.0 8E-122 2E-126 1113.7 52.6 626 311-948 38-717 (845)
7 TIGR01967 DEAH_box_HrpA ATP-de 100.0 3E-119 7E-124 1127.2 61.3 616 315-947 59-689 (1283)
8 KOG0926 DEAH-box RNA helicase 100.0 8E-118 2E-122 1021.5 44.4 633 309-944 242-1022(1172)
9 KOG0920 ATP-dependent RNA heli 100.0 3E-113 7E-118 1032.6 47.9 635 309-950 159-854 (924)
10 PRK11664 ATP-dependent RNA hel 100.0 2.9E-95 6E-100 896.6 58.3 566 321-948 3-574 (812)
11 TIGR01970 DEAH_box_HrpB ATP-de 100.0 2E-94 4.3E-99 887.4 58.7 573 322-947 1-580 (819)
12 KOG0921 Dosage compensation co 100.0 6.2E-66 1.3E-70 598.5 24.0 623 311-943 366-1071(1282)
13 PHA02653 RNA helicase NPH-II; 100.0 1.7E-59 3.6E-64 566.5 38.0 394 326-759 167-595 (675)
14 PRK01172 ski2-like helicase; P 100.0 3.8E-42 8.1E-47 423.7 44.0 435 321-770 20-504 (674)
15 PRK02362 ski2-like helicase; P 100.0 7.1E-39 1.5E-43 397.8 46.0 440 315-771 15-529 (737)
16 PRK00254 ski2-like helicase; P 100.0 2.2E-36 4.8E-41 374.7 43.6 442 313-773 13-523 (720)
17 PRK11776 ATP-dependent RNA hel 100.0 6.1E-36 1.3E-40 353.4 33.7 315 319-669 22-351 (460)
18 KOG0330 ATP-dependent RNA heli 100.0 1.4E-36 3.1E-41 331.1 23.0 311 321-668 81-408 (476)
19 PTZ00110 helicase; Provisional 100.0 1.7E-35 3.7E-40 355.3 32.8 319 316-669 145-486 (545)
20 PRK04837 ATP-dependent RNA hel 100.0 1.4E-35 3.1E-40 346.6 30.5 314 318-669 25-364 (423)
21 KOG0333 U5 snRNP-like RNA heli 100.0 7.1E-36 1.5E-40 334.8 25.7 437 184-668 136-625 (673)
22 PRK11192 ATP-dependent RNA hel 100.0 4.1E-35 8.8E-40 343.9 33.2 320 314-669 14-354 (434)
23 PRK10590 ATP-dependent RNA hel 100.0 5.3E-35 1.1E-39 344.9 32.7 315 318-669 18-354 (456)
24 KOG0331 ATP-dependent RNA heli 100.0 3.3E-35 7.1E-40 339.5 28.2 323 313-670 103-451 (519)
25 PLN00206 DEAD-box ATP-dependen 100.0 7E-35 1.5E-39 348.6 32.0 319 316-669 136-477 (518)
26 PRK11634 ATP-dependent RNA hel 100.0 1E-34 2.3E-39 352.2 33.5 319 315-669 20-354 (629)
27 PRK04537 ATP-dependent RNA hel 100.0 9.2E-35 2E-39 350.4 32.0 313 318-668 26-365 (572)
28 PRK01297 ATP-dependent RNA hel 100.0 1.1E-34 2.3E-39 344.1 31.3 319 313-669 99-444 (475)
29 PTZ00424 helicase 45; Provisio 100.0 1.7E-34 3.6E-39 334.7 29.2 314 320-669 47-376 (401)
30 TIGR03817 DECH_helic helicase/ 100.0 4.8E-34 1E-38 352.5 35.0 325 313-665 26-384 (742)
31 COG0513 SrmB Superfamily II DN 100.0 5.5E-34 1.2E-38 339.6 31.7 315 317-667 45-380 (513)
32 COG1204 Superfamily II helicas 100.0 9.6E-33 2.1E-37 338.3 36.8 436 323-775 31-543 (766)
33 TIGR00614 recQ_fam ATP-depende 100.0 2.4E-33 5.1E-38 332.1 29.9 302 324-669 12-335 (470)
34 COG1202 Superfamily II helicas 100.0 6.2E-33 1.3E-37 313.3 28.9 449 309-794 202-700 (830)
35 PRK11057 ATP-dependent DNA hel 100.0 2.1E-32 4.5E-37 332.8 33.6 302 323-669 25-345 (607)
36 PLN03137 ATP-dependent DNA hel 100.0 1.6E-32 3.4E-37 338.1 30.5 306 321-669 458-789 (1195)
37 PRK13767 ATP-dependent helicas 100.0 8.7E-32 1.9E-36 338.4 29.6 311 324-665 33-398 (876)
38 KOG0342 ATP-dependent RNA heli 100.0 1.1E-31 2.5E-36 300.6 26.5 320 315-669 96-439 (543)
39 TIGR01389 recQ ATP-dependent D 100.0 2.1E-31 4.5E-36 324.0 29.5 302 323-669 13-333 (591)
40 KOG0343 RNA Helicase [RNA proc 100.0 5E-32 1.1E-36 304.9 20.9 322 313-669 81-424 (758)
41 KOG0345 ATP-dependent RNA heli 100.0 3.4E-31 7.4E-36 294.8 27.1 332 315-681 20-380 (567)
42 KOG0340 ATP-dependent RNA heli 100.0 1.7E-30 3.8E-35 280.9 25.2 318 314-669 17-363 (442)
43 KOG0338 ATP-dependent RNA heli 100.0 5.4E-31 1.2E-35 294.6 20.3 317 317-669 197-535 (691)
44 TIGR00580 mfd transcription-re 100.0 3.6E-29 7.7E-34 312.6 34.2 300 322-667 450-770 (926)
45 KOG0348 ATP-dependent RNA heli 100.0 8.3E-30 1.8E-34 286.6 25.3 341 314-672 150-561 (708)
46 COG1201 Lhr Lhr-like helicases 100.0 1.1E-29 2.4E-34 307.9 28.4 364 321-724 20-438 (814)
47 TIGR02621 cas3_GSU0051 CRISPR- 100.0 2.7E-29 5.8E-34 306.2 29.9 340 322-700 14-424 (844)
48 PRK09751 putative ATP-dependen 100.0 1.5E-29 3.3E-34 323.5 28.9 297 343-661 1-379 (1490)
49 PRK10917 ATP-dependent DNA hel 100.0 7.2E-29 1.6E-33 305.1 32.9 300 321-665 259-587 (681)
50 TIGR01587 cas3_core CRISPR-ass 100.0 2E-29 4.3E-34 288.3 24.7 291 340-668 1-337 (358)
51 KOG0328 Predicted ATP-dependen 100.0 3.2E-29 6.9E-34 263.7 22.4 310 324-669 50-375 (400)
52 TIGR00643 recG ATP-dependent D 100.0 1.6E-28 3.5E-33 300.0 32.3 307 317-665 227-564 (630)
53 PRK10689 transcription-repair 100.0 1.5E-28 3.4E-33 312.8 32.5 298 323-666 600-918 (1147)
54 KOG0336 ATP-dependent RNA heli 100.0 1E-28 2.2E-33 269.9 21.1 314 321-669 240-574 (629)
55 KOG0952 DNA/RNA helicase MER3/ 100.0 2E-27 4.3E-32 283.9 31.8 438 326-775 113-640 (1230)
56 KOG0335 ATP-dependent RNA heli 100.0 1.1E-28 2.5E-33 281.1 19.6 310 322-666 95-443 (482)
57 KOG0350 DEAD-box ATP-dependent 100.0 4.1E-28 9E-33 271.6 20.4 324 314-669 150-542 (620)
58 KOG0332 ATP-dependent RNA heli 100.0 8E-28 1.7E-32 261.5 21.7 312 324-668 113-444 (477)
59 COG0514 RecQ Superfamily II DN 100.0 1.6E-27 3.5E-32 280.4 25.6 301 326-669 20-339 (590)
60 KOG0339 ATP-dependent RNA heli 100.0 1.6E-27 3.4E-32 266.4 23.7 312 320-669 242-577 (731)
61 TIGR03158 cas3_cyano CRISPR-as 100.0 1.6E-26 3.4E-31 264.7 30.6 284 327-653 1-357 (357)
62 KOG0347 RNA helicase [RNA proc 100.0 3.1E-28 6.8E-33 274.6 15.1 323 312-669 192-572 (731)
63 KOG0326 ATP-dependent RNA heli 100.0 5.8E-28 1.3E-32 257.6 16.0 307 325-668 109-430 (459)
64 COG1111 MPH1 ERCC4-like helica 100.0 3.1E-26 6.6E-31 259.1 29.9 313 324-667 16-481 (542)
65 COG1205 Distinct helicase fami 99.9 5.5E-26 1.2E-30 282.5 29.0 326 314-665 61-420 (851)
66 KOG0346 RNA helicase [RNA proc 99.9 1.6E-26 3.5E-31 255.5 19.7 305 324-668 42-411 (569)
67 KOG0354 DEAD-box like helicase 99.9 1.6E-25 3.4E-30 266.3 28.9 317 320-666 59-528 (746)
68 PHA02558 uvsW UvsW helicase; P 99.9 5.9E-25 1.3E-29 262.3 30.2 297 321-659 112-443 (501)
69 KOG0948 Nuclear exosomal RNA h 99.9 2.2E-26 4.7E-31 266.4 17.0 322 322-667 128-539 (1041)
70 KOG0334 RNA helicase [RNA proc 99.9 5E-26 1.1E-30 274.8 20.8 328 306-669 370-722 (997)
71 PRK13766 Hef nuclease; Provisi 99.9 8.4E-25 1.8E-29 274.2 32.3 314 321-669 13-481 (773)
72 KOG0947 Cytoplasmic exosomal R 99.9 2.6E-25 5.6E-30 263.0 22.3 324 321-667 295-723 (1248)
73 KOG0344 ATP-dependent RNA heli 99.9 1E-25 2.2E-30 258.3 18.2 307 326-669 161-497 (593)
74 COG4581 Superfamily II RNA hel 99.9 6.5E-25 1.4E-29 269.8 24.3 329 319-666 115-536 (1041)
75 KOG0341 DEAD-box protein abstr 99.9 1E-25 2.2E-30 245.1 12.9 317 314-668 183-529 (610)
76 KOG0951 RNA helicase BRR2, DEA 99.9 4.9E-24 1.1E-28 257.2 27.5 417 324-752 310-824 (1674)
77 PRK09401 reverse gyrase; Revie 99.9 8.8E-24 1.9E-28 270.1 27.3 299 315-653 72-429 (1176)
78 KOG4284 DEAD box protein [Tran 99.9 2.5E-24 5.4E-29 246.1 19.9 313 324-668 48-380 (980)
79 TIGR03714 secA2 accessory Sec 99.9 1.3E-22 2.7E-27 245.9 31.0 308 319-669 64-539 (762)
80 KOG0352 ATP-dependent DNA heli 99.9 7.2E-24 1.6E-28 233.3 17.4 303 327-669 24-364 (641)
81 TIGR00603 rad25 DNA repair hel 99.9 1.6E-22 3.4E-27 245.0 29.6 300 321-669 253-609 (732)
82 PRK14701 reverse gyrase; Provi 99.9 8.4E-23 1.8E-27 266.1 27.8 315 322-669 78-458 (1638)
83 KOG0327 Translation initiation 99.9 4.1E-23 8.9E-28 227.2 19.6 305 326-669 51-372 (397)
84 PRK09694 helicase Cas3; Provis 99.9 3.9E-22 8.4E-27 247.5 29.9 301 322-657 285-664 (878)
85 PRK05580 primosome assembly pr 99.9 2.4E-22 5.1E-27 247.0 27.3 312 322-662 143-544 (679)
86 PRK09200 preprotein translocas 99.9 5.1E-22 1.1E-26 242.6 28.3 312 319-669 72-543 (790)
87 PRK12898 secA preprotein trans 99.9 1.2E-21 2.6E-26 235.0 30.3 310 319-668 99-587 (656)
88 KOG0351 ATP-dependent DNA heli 99.9 7.7E-23 1.7E-27 253.1 20.5 307 324-669 265-594 (941)
89 TIGR00595 priA primosomal prot 99.9 2.8E-22 6E-27 238.6 20.5 296 342-666 1-381 (505)
90 TIGR01054 rgy reverse gyrase. 99.9 1.9E-21 4.2E-26 249.0 27.9 280 317-624 72-411 (1171)
91 TIGR00963 secA preprotein tran 99.9 3.5E-21 7.5E-26 232.2 27.6 310 319-669 50-519 (745)
92 COG4098 comFA Superfamily II D 99.9 1.1E-20 2.5E-25 204.5 28.5 295 329-667 107-417 (441)
93 KOG0950 DNA polymerase theta/e 99.9 3.6E-21 7.7E-26 230.4 22.7 331 319-668 219-612 (1008)
94 COG1061 SSL2 DNA or RNA helica 99.9 6.3E-20 1.4E-24 215.7 27.6 292 318-657 31-378 (442)
95 PRK11448 hsdR type I restricti 99.9 1.7E-19 3.6E-24 229.9 33.5 314 322-665 412-813 (1123)
96 KOG0337 ATP-dependent RNA heli 99.9 1.4E-21 2.9E-26 216.0 11.7 308 325-668 45-369 (529)
97 COG1200 RecG RecG-like helicas 99.8 3E-19 6.4E-24 210.4 27.7 312 315-667 252-591 (677)
98 KOG0921 Dosage compensation co 99.8 6E-23 1.3E-27 241.2 -6.0 449 315-779 398-895 (1282)
99 COG1197 Mfd Transcription-repa 99.8 5.9E-19 1.3E-23 217.7 27.8 297 326-668 597-914 (1139)
100 KOG0353 ATP-dependent DNA heli 99.8 1.8E-19 3.8E-24 195.9 20.3 302 325-668 96-468 (695)
101 PF07717 OB_NTP_bind: Oligonuc 99.8 9.2E-21 2E-25 182.2 5.4 101 841-943 1-114 (114)
102 PRK13104 secA preprotein trans 99.8 4.6E-18 9.9E-23 207.9 25.7 126 318-445 75-212 (896)
103 COG1203 CRISPR-associated heli 99.8 9.6E-18 2.1E-22 208.2 24.8 306 324-665 196-548 (733)
104 PRK04914 ATP-dependent helicas 99.8 3.3E-17 7.2E-22 205.1 27.3 110 529-668 492-606 (956)
105 PRK12906 secA preprotein trans 99.8 2E-17 4.4E-22 201.4 23.3 107 529-668 439-554 (796)
106 PRK12904 preprotein translocas 99.7 7E-17 1.5E-21 197.5 23.4 318 319-668 75-574 (830)
107 PF04408 HA2: Helicase associa 99.7 7E-18 1.5E-22 159.3 9.6 91 717-807 1-102 (102)
108 KOG0949 Predicted helicase, DE 99.7 1.3E-15 2.8E-20 181.9 23.5 162 322-487 510-682 (1330)
109 PRK13107 preprotein translocas 99.7 1.3E-15 2.7E-20 186.2 23.2 124 319-445 76-212 (908)
110 PF00270 DEAD: DEAD/DEAH box h 99.7 4.7E-16 1E-20 158.0 14.4 155 326-483 2-167 (169)
111 smart00847 HA2 Helicase associ 99.6 3.2E-16 7E-21 144.8 8.7 90 717-807 1-92 (92)
112 PRK12899 secA preprotein trans 99.6 1.6E-14 3.6E-19 176.7 25.7 123 321-445 88-225 (970)
113 KOG0349 Putative DEAD-box RNA 99.6 1.2E-15 2.6E-20 168.8 13.8 268 368-665 287-613 (725)
114 KOG0953 Mitochondrial RNA heli 99.6 7.4E-15 1.6E-19 167.7 18.4 274 338-667 191-477 (700)
115 KOG0329 ATP-dependent RNA heli 99.6 3.3E-15 7.1E-20 156.4 13.4 274 324-669 65-357 (387)
116 cd00268 DEADc DEAD-box helicas 99.6 1.4E-14 3.1E-19 152.3 18.1 155 321-478 19-185 (203)
117 COG1198 PriA Primosomal protei 99.6 3.5E-14 7.6E-19 172.6 22.5 309 321-662 196-598 (730)
118 TIGR00348 hsdR type I site-spe 99.6 1.6E-13 3.5E-18 169.1 24.1 285 338-659 263-639 (667)
119 COG4096 HsdR Type I site-speci 99.6 4.1E-13 8.9E-18 160.7 24.7 295 325-657 167-527 (875)
120 smart00487 DEXDc DEAD-like hel 99.5 6.6E-13 1.4E-17 136.2 16.9 164 321-488 6-183 (201)
121 TIGR01407 dinG_rel DnaQ family 99.5 1.5E-11 3.4E-16 155.9 31.8 183 468-663 596-811 (850)
122 KOG4150 Predicted ATP-dependen 99.5 3.3E-13 7.1E-18 153.6 14.4 318 312-657 275-629 (1034)
123 PLN03142 Probable chromatin-re 99.5 5E-12 1.1E-16 159.6 26.1 112 529-671 486-603 (1033)
124 COG1110 Reverse gyrase [DNA re 99.5 9.5E-12 2.1E-16 151.0 27.0 274 318-624 77-419 (1187)
125 cd00046 DEXDc DEAD-like helica 99.5 9.3E-13 2E-17 127.2 14.6 136 339-477 1-144 (144)
126 PF07652 Flavi_DEAD: Flaviviru 99.4 5.4E-13 1.2E-17 131.7 11.5 134 337-478 3-137 (148)
127 PRK12326 preprotein translocas 99.4 1E-11 2.2E-16 149.3 24.2 125 319-445 72-208 (764)
128 TIGR00631 uvrb excinuclease AB 99.4 2.2E-12 4.8E-17 157.9 17.8 113 529-667 441-553 (655)
129 cd00079 HELICc Helicase superf 99.4 4.8E-12 1E-16 122.6 13.6 104 529-663 27-131 (131)
130 TIGR02562 cas3_yersinia CRISPR 99.4 4.2E-11 9.1E-16 148.2 23.2 97 534-658 760-882 (1110)
131 PRK05298 excinuclease ABC subu 99.4 1E-11 2.2E-16 152.9 17.9 112 529-666 445-556 (652)
132 PRK13103 secA preprotein trans 99.3 3.1E-11 6.8E-16 148.3 20.8 125 319-445 76-212 (913)
133 PRK07246 bifunctional ATP-depe 99.3 9E-10 1.9E-14 138.7 32.8 135 511-663 630-780 (820)
134 PRK12900 secA preprotein trans 99.3 1.9E-11 4.1E-16 150.6 17.1 163 468-669 534-713 (1025)
135 KOG0951 RNA helicase BRR2, DEA 99.3 2.5E-10 5.3E-15 140.3 23.9 322 336-679 1157-1508(1674)
136 COG0556 UvrB Helicase subunit 99.3 9.7E-10 2.1E-14 126.3 27.1 165 468-665 387-555 (663)
137 PF00271 Helicase_C: Helicase 99.3 6.8E-12 1.5E-16 111.9 7.7 73 566-656 6-78 (78)
138 PF04851 ResIII: Type III rest 99.3 1.9E-11 4.2E-16 125.2 10.2 146 322-477 2-182 (184)
139 PRK12903 secA preprotein trans 99.2 6.2E-10 1.3E-14 135.8 23.3 125 319-445 72-208 (925)
140 CHL00122 secA preprotein trans 99.2 3.7E-10 8.1E-15 138.4 21.1 125 319-445 70-206 (870)
141 PRK12902 secA preprotein trans 99.1 5.3E-09 1.1E-13 128.3 24.4 126 318-445 78-215 (939)
142 smart00490 HELICc helicase sup 99.1 2.1E-10 4.5E-15 101.7 8.3 72 567-656 11-82 (82)
143 PRK08074 bifunctional ATP-depe 99.1 3.9E-08 8.4E-13 126.0 31.0 141 511-663 734-890 (928)
144 PRK14873 primosome assembly pr 99.1 4.4E-09 9.5E-14 129.0 20.0 133 344-486 166-312 (665)
145 PF02399 Herpes_ori_bp: Origin 99.0 5.2E-08 1.1E-12 118.7 23.8 294 336-668 47-389 (824)
146 KOG1123 RNA polymerase II tran 99.0 5.6E-09 1.2E-13 118.6 14.2 300 324-669 303-655 (776)
147 TIGR03117 cas_csf4 CRISPR-asso 98.9 5.1E-07 1.1E-11 110.0 29.5 60 329-388 7-67 (636)
148 KOG0387 Transcription-coupled 98.8 1.5E-06 3.2E-11 104.4 29.2 171 531-745 547-719 (923)
149 KOG0385 Chromatin remodeling c 98.8 9.3E-07 2E-11 105.6 24.0 114 529-670 486-602 (971)
150 PRK11747 dinG ATP-dependent DN 98.8 5.2E-06 1.1E-10 103.6 31.9 176 469-663 458-671 (697)
151 TIGR00604 rad3 DNA repair heli 98.8 1.3E-06 2.9E-11 109.2 26.4 185 469-663 443-671 (705)
152 COG1199 DinG Rad3-related DNA 98.6 6.8E-06 1.5E-10 102.2 27.0 179 469-663 405-614 (654)
153 KOG0390 DNA repair protein, SN 98.6 2.8E-06 6.1E-11 104.2 22.0 86 567-670 619-710 (776)
154 COG4889 Predicted helicase [Ge 98.5 1.8E-06 3.9E-11 103.8 14.4 310 324-661 162-578 (1518)
155 KOG1000 Chromatin remodeling p 98.4 1.7E-05 3.6E-10 91.2 21.1 302 324-668 199-604 (689)
156 KOG0384 Chromodomain-helicase 98.3 2.3E-05 4.9E-10 98.2 18.7 137 528-695 697-836 (1373)
157 PF00448 SRP54: SRP54-type pro 98.2 6.3E-06 1.4E-10 87.3 11.0 125 339-481 2-129 (196)
158 COG0653 SecA Preprotein transl 98.2 2.1E-05 4.6E-10 97.0 16.3 122 319-445 74-210 (822)
159 PRK12901 secA preprotein trans 98.2 2.1E-05 4.5E-10 98.4 15.4 162 468-668 564-742 (1112)
160 PF13401 AAA_22: AAA domain; P 98.1 2.2E-06 4.8E-11 83.5 4.6 119 336-476 2-125 (131)
161 PF13604 AAA_30: AAA domain; P 98.1 1.5E-05 3.2E-10 84.4 9.5 122 325-477 3-131 (196)
162 COG1419 FlhF Flagellar GTP-bin 98.1 9.4E-05 2E-09 85.0 16.3 128 337-487 202-333 (407)
163 PRK12723 flagellar biosynthesi 98.0 5.9E-05 1.3E-09 87.6 12.9 127 338-487 174-307 (388)
164 COG0610 Type I site-specific r 97.9 0.00062 1.3E-08 87.8 22.2 138 339-488 274-428 (962)
165 KOG0392 SNF2 family DNA-depend 97.9 0.00068 1.5E-08 85.2 21.2 116 531-671 1341-1458(1549)
166 PRK05703 flhF flagellar biosyn 97.9 0.00068 1.5E-08 80.1 20.4 129 337-488 220-356 (424)
167 PF00176 SNF2_N: SNF2 family N 97.9 4.5E-05 9.7E-10 84.7 9.7 131 337-477 24-172 (299)
168 PRK11889 flhF flagellar biosyn 97.9 0.00014 3.1E-09 83.7 13.6 130 338-488 241-376 (436)
169 PRK14722 flhF flagellar biosyn 97.8 0.00012 2.6E-09 84.5 12.3 124 335-481 134-261 (374)
170 KOG0952 DNA/RNA helicase MER3/ 97.8 1.2E-05 2.7E-10 99.1 4.4 227 320-550 909-1173(1230)
171 PF02562 PhoH: PhoH-like prote 97.8 8.5E-05 1.8E-09 79.0 10.0 55 323-377 4-59 (205)
172 TIGR02768 TraA_Ti Ti-type conj 97.8 0.0046 1E-07 78.1 25.5 124 320-474 349-474 (744)
173 PF13245 AAA_19: Part of AAA d 97.7 8.2E-05 1.8E-09 66.7 7.0 54 334-387 6-62 (76)
174 TIGR01447 recD exodeoxyribonuc 97.7 0.00025 5.5E-09 86.7 12.6 135 326-474 148-293 (586)
175 PF06862 DUF1253: Protein of u 97.7 0.0034 7.4E-08 73.8 21.3 230 412-669 131-417 (442)
176 PRK12724 flagellar biosynthesi 97.7 0.00055 1.2E-08 79.8 14.2 128 337-488 222-358 (432)
177 TIGR01448 recD_rel helicase, p 97.6 0.00035 7.6E-09 87.7 13.3 128 318-477 318-453 (720)
178 PRK10536 hypothetical protein; 97.6 0.00012 2.6E-09 80.0 7.9 59 320-378 56-115 (262)
179 PRK10875 recD exonuclease V su 97.6 0.00028 6E-09 86.6 11.8 135 326-474 155-299 (615)
180 KOG1803 DNA helicase [Replicat 97.6 0.0001 2.2E-09 87.2 7.6 64 324-388 186-250 (649)
181 cd00009 AAA The AAA+ (ATPases 97.6 0.0007 1.5E-08 65.6 12.3 46 329-375 8-55 (151)
182 PF09848 DUF2075: Uncharacteri 97.6 0.00024 5.2E-09 81.9 10.2 91 339-446 2-94 (352)
183 PRK06526 transposase; Provisio 97.6 0.00029 6.3E-09 77.7 10.3 40 333-373 93-132 (254)
184 PRK13889 conjugal transfer rel 97.6 0.0082 1.8E-07 77.3 24.5 127 320-477 343-471 (988)
185 PRK12726 flagellar biosynthesi 97.6 0.00072 1.6E-08 77.8 13.5 130 336-486 204-336 (407)
186 PRK14974 cell division protein 97.5 0.00087 1.9E-08 76.7 12.0 122 338-477 140-264 (336)
187 PF13086 AAA_11: AAA domain; P 97.4 0.00038 8.2E-09 74.0 8.1 66 324-389 2-75 (236)
188 KOG0389 SNF2 family DNA-depend 97.4 0.0058 1.3E-07 74.5 18.5 92 566-672 800-893 (941)
189 PRK04296 thymidine kinase; Pro 97.4 0.0012 2.6E-08 69.6 11.4 111 338-476 2-115 (190)
190 PRK12727 flagellar biosynthesi 97.4 0.0016 3.5E-08 77.8 13.3 127 334-483 346-475 (559)
191 TIGR02760 TraI_TIGR conjugativ 97.4 0.037 8.1E-07 76.5 28.0 247 321-592 427-685 (1960)
192 smart00382 AAA ATPases associa 97.3 0.00067 1.5E-08 65.0 8.1 39 338-377 2-40 (148)
193 PRK14723 flhF flagellar biosyn 97.3 0.0019 4E-08 80.5 13.4 124 337-483 184-311 (767)
194 PF05729 NACHT: NACHT domain 97.3 0.0011 2.3E-08 66.7 9.4 60 437-496 83-149 (166)
195 PRK14721 flhF flagellar biosyn 97.3 0.0022 4.7E-08 75.4 12.5 129 336-487 189-324 (420)
196 PF12340 DUF3638: Protein of u 97.2 0.0031 6.7E-08 68.0 11.5 108 315-425 15-143 (229)
197 PRK08181 transposase; Validate 97.1 0.0055 1.2E-07 68.2 13.7 115 334-488 102-219 (269)
198 PRK06995 flhF flagellar biosyn 97.1 0.0036 7.7E-08 74.7 12.9 129 337-488 255-390 (484)
199 PF07517 SecA_DEAD: SecA DEAD- 97.1 0.0027 5.9E-08 70.2 11.1 122 320-445 74-207 (266)
200 PRK10416 signal recognition pa 97.1 0.0055 1.2E-07 69.8 13.6 125 337-479 113-246 (318)
201 PF13872 AAA_34: P-loop contai 97.1 0.0039 8.5E-08 69.6 11.7 139 338-477 62-220 (303)
202 PRK06731 flhF flagellar biosyn 97.1 0.0072 1.6E-07 67.2 13.5 130 337-487 74-209 (270)
203 PRK07952 DNA replication prote 97.0 0.0096 2.1E-07 65.3 13.5 115 339-488 100-215 (244)
204 PF13173 AAA_14: AAA domain 97.0 0.0043 9.4E-08 60.9 9.6 99 337-477 1-99 (128)
205 PRK13826 Dtr system oriT relax 97.0 0.0061 1.3E-07 78.9 13.4 127 320-477 378-506 (1102)
206 PRK15483 type III restriction- 96.9 0.0039 8.5E-08 79.1 11.3 138 336-478 57-239 (986)
207 TIGR03015 pepcterm_ATPase puta 96.9 0.0028 6E-08 69.8 8.5 24 338-361 43-66 (269)
208 PF00580 UvrD-helicase: UvrD/R 96.9 0.0019 4.1E-08 72.1 7.0 67 325-393 2-71 (315)
209 TIGR00064 ftsY signal recognit 96.8 0.015 3.3E-07 64.9 13.9 124 338-479 72-204 (272)
210 PF05970 PIF1: PIF1-like helic 96.8 0.0033 7.1E-08 73.0 8.7 57 326-383 4-66 (364)
211 PHA03333 putative ATPase subun 96.8 0.031 6.6E-07 68.5 16.9 146 331-488 181-343 (752)
212 smart00488 DEXDc2 DEAD-like he 96.8 0.0033 7.2E-08 70.7 8.1 64 324-387 9-81 (289)
213 smart00489 DEXDc3 DEAD-like he 96.8 0.0033 7.2E-08 70.7 8.1 64 324-387 9-81 (289)
214 PRK09183 transposase/IS protei 96.7 0.014 3.1E-07 64.5 12.6 39 335-374 99-137 (259)
215 TIGR03420 DnaA_homol_Hda DnaA 96.7 0.013 2.8E-07 62.8 11.9 26 336-361 36-61 (226)
216 PRK10867 signal recognition pa 96.7 0.016 3.4E-07 68.7 12.7 122 339-477 101-225 (433)
217 PRK08727 hypothetical protein; 96.6 0.0099 2.1E-07 64.7 10.2 34 339-373 42-75 (233)
218 TIGR03499 FlhF flagellar biosy 96.6 0.007 1.5E-07 67.8 9.2 56 337-392 193-251 (282)
219 PRK08903 DnaA regulatory inact 96.6 0.015 3.2E-07 62.7 11.2 37 337-374 41-77 (227)
220 TIGR02881 spore_V_K stage V sp 96.6 0.0098 2.1E-07 65.7 9.8 21 338-358 42-62 (261)
221 TIGR00376 DNA helicase, putati 96.6 0.0051 1.1E-07 76.3 8.3 66 323-389 157-223 (637)
222 PF05127 Helicase_RecD: Helica 96.5 0.0012 2.6E-08 68.7 2.1 117 342-478 1-124 (177)
223 PRK07003 DNA polymerase III su 96.5 0.0095 2.1E-07 73.8 9.9 50 423-474 107-156 (830)
224 PRK00771 signal recognition pa 96.5 0.026 5.6E-07 66.9 13.2 120 338-477 95-217 (437)
225 KOG1802 RNA helicase nonsense 96.5 0.0041 9E-08 74.3 6.4 144 324-477 411-558 (935)
226 TIGR00959 ffh signal recogniti 96.5 0.016 3.6E-07 68.4 11.3 122 339-477 100-224 (428)
227 PRK06835 DNA replication prote 96.5 0.024 5.1E-07 65.0 12.2 37 337-374 182-218 (329)
228 PRK07764 DNA polymerase III su 96.4 0.013 2.8E-07 74.5 10.9 46 427-474 112-157 (824)
229 cd01120 RecA-like_NTPases RecA 96.4 0.02 4.4E-07 57.0 10.2 35 340-375 1-35 (165)
230 PRK14956 DNA polymerase III su 96.4 0.0076 1.6E-07 71.7 8.1 47 430-480 116-162 (484)
231 PRK12402 replication factor C 96.4 0.019 4.2E-07 65.2 10.8 33 329-361 25-59 (337)
232 TIGR01425 SRP54_euk signal rec 96.3 0.021 4.7E-07 67.2 10.9 131 339-487 101-236 (429)
233 COG1444 Predicted P-loop ATPas 96.3 0.047 1E-06 67.8 14.3 120 340-478 233-357 (758)
234 PF01695 IstB_IS21: IstB-like 96.3 0.0088 1.9E-07 62.5 6.8 118 333-488 42-160 (178)
235 cd03115 SRP The signal recogni 96.2 0.048 1E-06 56.1 12.0 120 340-477 2-124 (173)
236 PRK14949 DNA polymerase III su 96.2 0.015 3.2E-07 73.4 9.5 49 430-482 114-162 (944)
237 PRK06893 DNA replication initi 96.2 0.042 9.1E-07 59.6 12.0 48 433-482 89-139 (229)
238 PRK08116 hypothetical protein; 96.2 0.064 1.4E-06 59.8 13.6 36 338-374 114-149 (268)
239 PRK12323 DNA polymerase III su 96.2 0.021 4.6E-07 70.0 10.3 49 425-475 114-162 (700)
240 PRK08084 DNA replication initi 96.2 0.039 8.5E-07 60.1 11.5 35 338-373 45-79 (235)
241 COG1484 DnaC DNA replication p 96.2 0.062 1.3E-06 59.4 13.0 117 332-487 99-218 (254)
242 PHA02533 17 large terminase pr 96.1 0.18 3.9E-06 61.5 17.4 156 320-486 56-219 (534)
243 PRK12377 putative replication 96.0 0.11 2.3E-06 57.3 14.2 36 337-373 100-135 (248)
244 PRK08939 primosomal protein Dn 96.0 0.11 2.4E-06 58.9 14.7 113 337-486 155-269 (306)
245 PRK14957 DNA polymerase III su 96.0 0.027 5.8E-07 68.5 10.1 50 423-474 107-156 (546)
246 PF00004 AAA: ATPase family as 96.0 0.0058 1.3E-07 59.1 3.7 21 341-361 1-21 (132)
247 PRK09112 DNA polymerase III su 96.0 0.02 4.3E-07 66.2 8.6 48 426-475 132-179 (351)
248 PRK08691 DNA polymerase III su 96.0 0.023 5.1E-07 70.2 9.5 43 430-474 114-156 (709)
249 cd01124 KaiC KaiC is a circadi 96.0 0.015 3.3E-07 60.1 7.0 46 340-387 1-46 (187)
250 PRK14961 DNA polymerase III su 96.0 0.019 4.2E-07 66.6 8.4 47 426-474 110-156 (363)
251 cd03247 ABCC_cytochrome_bd The 96.0 0.032 6.9E-07 57.9 9.2 126 335-477 25-157 (178)
252 PRK06645 DNA polymerase III su 95.9 0.078 1.7E-06 64.1 13.6 29 333-361 35-66 (507)
253 PRK14964 DNA polymerase III su 95.9 0.051 1.1E-06 65.3 11.9 48 425-474 106-153 (491)
254 PRK05642 DNA replication initi 95.9 0.04 8.8E-07 60.0 10.2 35 339-374 46-80 (234)
255 PRK14958 DNA polymerase III su 95.9 0.022 4.8E-07 68.9 8.9 43 430-474 114-156 (509)
256 PRK07994 DNA polymerase III su 95.9 0.017 3.7E-07 71.4 7.8 53 425-481 109-161 (647)
257 KOG2340 Uncharacterized conser 95.9 0.11 2.3E-06 61.4 13.7 321 317-669 210-670 (698)
258 PF05621 TniB: Bacterial TniB 95.9 0.026 5.6E-07 63.3 8.4 119 339-478 62-190 (302)
259 KOG0386 Chromatin remodeling c 95.9 0.023 4.9E-07 71.1 8.6 88 567-672 750-843 (1157)
260 PRK14952 DNA polymerase III su 95.9 0.052 1.1E-06 66.7 11.8 47 426-474 109-155 (584)
261 COG1875 NYN ribonuclease and A 95.8 0.034 7.3E-07 63.2 9.1 60 317-376 222-285 (436)
262 PHA02544 44 clamp loader, smal 95.8 0.087 1.9E-06 59.6 12.6 39 434-474 99-138 (316)
263 cd03222 ABC_RNaseL_inhibitor T 95.8 0.034 7.5E-07 58.0 8.5 109 334-477 21-132 (177)
264 cd00267 ABC_ATPase ABC (ATP-bi 95.8 0.027 5.9E-07 57.0 7.6 116 335-477 22-140 (157)
265 TIGR02880 cbbX_cfxQ probable R 95.7 0.043 9.3E-07 61.6 9.7 36 338-373 58-96 (284)
266 CHL00181 cbbX CbbX; Provisiona 95.7 0.051 1.1E-06 61.1 10.1 21 338-358 59-79 (287)
267 TIGR02640 gas_vesic_GvpN gas v 95.7 0.024 5.2E-07 62.8 7.4 34 326-359 9-42 (262)
268 COG0552 FtsY Signal recognitio 95.7 0.073 1.6E-06 60.2 11.1 131 339-487 140-281 (340)
269 PRK06921 hypothetical protein; 95.7 0.13 2.8E-06 57.3 13.0 37 337-374 116-153 (266)
270 TIGR00678 holB DNA polymerase 95.7 0.061 1.3E-06 56.3 9.9 32 330-361 3-37 (188)
271 PRK00411 cdc6 cell division co 95.7 0.055 1.2E-06 63.2 10.6 23 339-361 56-78 (394)
272 cd03221 ABCF_EF-3 ABCF_EF-3 E 95.7 0.037 7.9E-07 55.6 7.9 102 335-477 23-127 (144)
273 cd01130 VirB11-like_ATPase Typ 95.7 0.072 1.6E-06 55.8 10.4 25 333-357 20-44 (186)
274 PRK14969 DNA polymerase III su 95.6 0.058 1.3E-06 65.7 10.7 49 424-474 108-156 (527)
275 PRK14960 DNA polymerase III su 95.6 0.033 7.2E-07 68.4 8.5 32 330-361 26-60 (702)
276 PRK09111 DNA polymerase III su 95.6 0.1 2.2E-06 64.4 12.8 50 423-474 120-169 (598)
277 PRK14951 DNA polymerase III su 95.6 0.059 1.3E-06 66.5 10.7 49 424-474 113-161 (618)
278 PF13307 Helicase_C_2: Helicas 95.6 0.012 2.6E-07 60.7 4.1 121 529-663 8-147 (167)
279 PRK04195 replication factor C 95.6 0.16 3.4E-06 61.4 14.2 25 338-362 39-63 (482)
280 KOG1002 Nucleotide excision re 95.5 0.13 2.9E-06 60.0 12.6 144 321-477 182-354 (791)
281 KOG4439 RNA polymerase II tran 95.5 1.2 2.6E-05 54.6 20.8 91 566-671 769-862 (901)
282 PRK14962 DNA polymerase III su 95.5 0.068 1.5E-06 64.2 10.7 31 331-361 26-59 (472)
283 PRK00149 dnaA chromosomal repl 95.4 0.082 1.8E-06 63.2 11.0 35 339-374 149-185 (450)
284 COG2804 PulE Type II secretory 95.4 0.046 1E-06 64.9 8.6 97 321-445 239-337 (500)
285 PRK14955 DNA polymerase III su 95.4 0.045 9.7E-07 64.4 8.5 30 331-360 28-60 (397)
286 cd01122 GP4d_helicase GP4d_hel 95.4 0.078 1.7E-06 58.6 9.9 44 331-374 23-66 (271)
287 cd03228 ABCC_MRP_Like The MRP 95.4 0.073 1.6E-06 54.9 9.1 126 335-477 25-155 (171)
288 PF01637 Arch_ATPase: Archaeal 95.4 0.032 6.9E-07 59.2 6.6 32 330-361 10-43 (234)
289 PRK14963 DNA polymerase III su 95.3 0.1 2.2E-06 63.2 11.5 44 428-473 109-152 (504)
290 TIGR03345 VI_ClpV1 type VI sec 95.3 0.078 1.7E-06 68.1 11.0 119 340-486 598-727 (852)
291 PRK14712 conjugal transfer nic 95.3 0.11 2.4E-06 69.7 12.5 124 323-477 835-968 (1623)
292 TIGR03346 chaperone_ClpB ATP-d 95.3 0.35 7.6E-06 62.5 16.8 121 339-486 596-726 (852)
293 PRK11823 DNA repair protein Ra 95.3 0.064 1.4E-06 64.0 9.5 55 335-392 77-131 (446)
294 PRK09087 hypothetical protein; 95.3 0.1 2.2E-06 56.7 10.2 22 338-359 44-65 (226)
295 cd03229 ABC_Class3 This class 95.2 0.0098 2.1E-07 61.7 2.2 131 335-477 23-161 (178)
296 KOG0391 SNF2 family DNA-depend 95.2 0.12 2.5E-06 65.7 11.1 118 528-673 1274-1393(1958)
297 TIGR02760 TraI_TIGR conjugativ 95.1 0.091 2E-06 72.9 11.4 124 322-476 1018-1149(1960)
298 cd03246 ABCC_Protease_Secretio 95.1 0.047 1E-06 56.4 6.8 128 335-477 25-156 (173)
299 PF03266 NTPase_1: NTPase; In 95.1 0.17 3.6E-06 52.5 10.8 114 340-472 1-130 (168)
300 cd03214 ABC_Iron-Siderophores_ 95.1 0.044 9.5E-07 57.0 6.6 126 335-477 22-158 (180)
301 cd03216 ABC_Carb_Monos_I This 95.1 0.064 1.4E-06 55.0 7.7 116 335-477 23-142 (163)
302 PF00437 T2SE: Type II/IV secr 95.1 0.031 6.7E-07 61.9 5.7 44 333-377 122-165 (270)
303 PRK06620 hypothetical protein; 95.1 0.12 2.6E-06 55.6 10.0 19 339-357 45-63 (214)
304 PF13177 DNA_pol3_delta2: DNA 95.1 0.068 1.5E-06 54.9 7.7 53 423-477 90-142 (162)
305 PF00931 NB-ARC: NB-ARC domain 95.1 0.031 6.8E-07 61.9 5.7 65 329-393 6-76 (287)
306 PRK14959 DNA polymerase III su 95.0 0.065 1.4E-06 65.9 8.6 31 330-360 27-60 (624)
307 PRK05707 DNA polymerase III su 95.0 0.1 2.2E-06 59.9 9.6 136 323-476 3-145 (328)
308 PRK10865 protein disaggregatio 95.0 0.14 3E-06 66.0 11.9 32 340-372 600-631 (857)
309 PTZ00293 thymidine kinase; Pro 95.0 0.055 1.2E-06 58.0 6.8 39 337-376 3-41 (211)
310 KOG0989 Replication factor C, 94.9 0.11 2.4E-06 57.9 9.3 43 432-476 126-168 (346)
311 PRK14088 dnaA chromosomal repl 94.9 0.12 2.5E-06 61.7 10.4 37 339-375 131-168 (440)
312 TIGR02782 TrbB_P P-type conjug 94.9 0.057 1.2E-06 61.1 7.4 50 329-379 123-174 (299)
313 PRK06067 flagellar accessory p 94.9 0.07 1.5E-06 57.8 7.8 39 335-374 22-60 (234)
314 cd03238 ABC_UvrA The excision 94.9 0.095 2.1E-06 54.7 8.3 119 335-478 18-150 (176)
315 TIGR00362 DnaA chromosomal rep 94.9 0.13 2.9E-06 60.5 10.4 35 339-374 137-173 (405)
316 TIGR02928 orc1/cdc6 family rep 94.8 0.12 2.6E-06 59.7 9.8 21 339-359 41-61 (365)
317 PRK11054 helD DNA helicase IV; 94.8 0.065 1.4E-06 67.2 8.0 78 313-392 186-266 (684)
318 PLN03025 replication factor C 94.8 0.2 4.3E-06 57.2 11.4 23 339-361 35-57 (319)
319 PRK07133 DNA polymerase III su 94.8 0.18 3.8E-06 63.1 11.7 47 423-472 106-153 (725)
320 PRK13709 conjugal transfer nic 94.8 0.23 5E-06 67.6 13.4 126 321-477 965-1100(1747)
321 cd03230 ABC_DR_subfamily_A Thi 94.7 0.075 1.6E-06 54.9 7.1 126 335-476 23-154 (173)
322 COG1435 Tdk Thymidine kinase [ 94.7 0.14 3.1E-06 53.9 9.0 117 338-480 4-121 (201)
323 PRK14950 DNA polymerase III su 94.7 0.19 4.2E-06 62.1 11.8 30 331-360 28-60 (585)
324 COG1120 FepC ABC-type cobalami 94.7 0.048 1E-06 60.1 5.8 60 418-478 139-200 (258)
325 PRK13833 conjugal transfer pro 94.7 0.053 1.1E-06 61.9 6.3 48 331-379 137-186 (323)
326 PRK14953 DNA polymerase III su 94.7 0.11 2.4E-06 62.7 9.3 37 423-461 107-143 (486)
327 COG0541 Ffh Signal recognition 94.7 0.2 4.4E-06 58.4 10.9 131 339-488 101-237 (451)
328 PRK14965 DNA polymerase III su 94.7 0.094 2E-06 64.6 8.8 49 424-474 108-156 (576)
329 PRK08533 flagellar accessory p 94.7 0.039 8.5E-07 60.0 4.9 39 335-374 21-59 (230)
330 TIGR02788 VirB11 P-type DNA tr 94.6 0.16 3.5E-06 57.7 10.0 43 332-376 138-180 (308)
331 COG0542 clpA ATP-binding subun 94.6 0.69 1.5E-05 58.2 16.1 118 339-485 522-651 (786)
332 PHA03368 DNA packaging termina 94.6 0.34 7.4E-06 59.5 13.1 158 314-487 233-400 (738)
333 PRK07471 DNA polymerase III su 94.6 0.29 6.4E-06 56.9 12.1 53 423-477 129-181 (365)
334 PRK07940 DNA polymerase III su 94.5 0.19 4.2E-06 59.0 10.6 51 423-476 105-155 (394)
335 PRK12422 chromosomal replicati 94.5 0.15 3.2E-06 60.9 9.7 36 339-375 142-177 (445)
336 PTZ00112 origin recognition co 94.5 0.2 4.4E-06 63.1 10.8 20 340-359 783-802 (1164)
337 PRK05896 DNA polymerase III su 94.5 0.11 2.4E-06 63.6 8.6 29 331-359 28-59 (605)
338 cd03239 ABC_SMC_head The struc 94.4 0.32 6.9E-06 50.8 10.7 122 340-477 24-158 (178)
339 COG2256 MGS1 ATPase related to 94.3 0.57 1.2E-05 54.3 13.3 26 333-358 41-68 (436)
340 PRK08451 DNA polymerase III su 94.3 0.3 6.6E-06 59.4 11.8 43 430-474 112-154 (535)
341 TIGR02868 CydC thiol reductant 94.3 0.16 3.5E-06 61.9 9.7 57 418-475 471-527 (529)
342 PRK05563 DNA polymerase III su 94.3 0.12 2.7E-06 63.4 8.7 36 424-461 108-143 (559)
343 PRK14087 dnaA chromosomal repl 94.3 0.31 6.6E-06 58.4 11.7 36 339-375 142-179 (450)
344 TIGR02397 dnaX_nterm DNA polym 94.3 0.34 7.5E-06 55.6 11.8 37 423-461 105-141 (355)
345 PRK10919 ATP-dependent DNA hel 94.2 0.078 1.7E-06 66.6 6.9 66 324-392 3-72 (672)
346 cd03223 ABCD_peroxisomal_ALDP 94.2 0.1 2.2E-06 53.7 6.6 118 335-477 24-148 (166)
347 PF00308 Bac_DnaA: Bacterial d 94.2 0.38 8.3E-06 51.9 11.2 101 339-477 35-140 (219)
348 cd01393 recA_like RecA is a b 94.2 0.076 1.7E-06 56.9 5.9 40 335-374 16-60 (226)
349 PF05496 RuvB_N: Holliday junc 94.2 0.13 2.8E-06 55.6 7.4 20 339-358 51-70 (233)
350 PRK14948 DNA polymerase III su 94.1 0.13 2.7E-06 64.0 8.3 31 331-361 28-61 (620)
351 PRK00440 rfc replication facto 94.1 0.52 1.1E-05 53.1 12.8 21 340-360 40-60 (319)
352 PF01443 Viral_helicase1: Vira 94.1 0.055 1.2E-06 58.1 4.5 22 341-362 1-22 (234)
353 KOG0058 Peptide exporter, ABC 94.1 0.032 7E-07 68.4 3.0 24 334-357 490-513 (716)
354 PRK13851 type IV secretion sys 94.1 0.079 1.7E-06 61.1 6.0 47 331-379 155-201 (344)
355 cd03282 ABC_MSH4_euk MutS4 hom 94.0 0.1 2.2E-06 55.8 6.4 21 337-357 28-48 (204)
356 PRK14954 DNA polymerase III su 94.0 0.14 3.1E-06 63.3 8.4 30 331-360 28-60 (620)
357 COG1134 TagH ABC-type polysacc 94.0 0.16 3.4E-06 55.3 7.7 74 412-488 142-216 (249)
358 KOG1805 DNA replication helica 94.0 0.093 2E-06 65.8 6.7 61 328-389 675-735 (1100)
359 COG0470 HolB ATPase involved i 94.0 0.13 2.9E-06 57.9 7.6 50 423-474 97-146 (325)
360 KOG2228 Origin recognition com 94.0 0.61 1.3E-05 52.9 12.3 127 337-479 48-183 (408)
361 PRK13894 conjugal transfer ATP 94.0 0.093 2E-06 59.9 6.3 48 331-379 141-190 (319)
362 cd01125 repA Hexameric Replica 94.0 0.28 6.1E-06 53.4 9.8 37 338-374 1-48 (239)
363 TIGR02533 type_II_gspE general 93.9 0.17 3.7E-06 61.1 8.6 38 322-359 224-263 (486)
364 PRK14970 DNA polymerase III su 93.9 0.19 4.2E-06 58.3 8.8 29 330-358 28-59 (367)
365 COG1122 CbiO ABC-type cobalt t 93.8 0.18 3.8E-06 55.2 7.8 23 335-357 27-49 (235)
366 COG3587 Restriction endonuclea 93.8 0.2 4.2E-06 62.3 8.8 53 592-662 482-537 (985)
367 KOG2373 Predicted mitochondria 93.8 0.012 2.6E-07 65.9 -1.2 38 326-363 261-298 (514)
368 TIGR02858 spore_III_AA stage I 93.8 0.58 1.3E-05 52.2 12.0 21 339-359 112-132 (270)
369 PRK12900 secA preprotein trans 93.8 0.079 1.7E-06 67.4 5.6 117 324-445 137-268 (1025)
370 PRK13342 recombination factor 93.7 0.32 7E-06 57.5 10.5 20 340-359 38-57 (413)
371 KOG2036 Predicted P-loop ATPas 93.7 3.4 7.3E-05 50.8 18.4 131 331-478 265-412 (1011)
372 PRK14971 DNA polymerase III su 93.7 0.27 5.8E-06 61.1 10.1 50 424-476 110-159 (614)
373 PF12775 AAA_7: P-loop contain 93.7 0.19 4.2E-06 56.1 8.0 28 334-361 29-56 (272)
374 PRK04841 transcriptional regul 93.7 0.26 5.7E-06 63.7 10.5 27 335-361 29-55 (903)
375 TIGR02538 type_IV_pilB type IV 93.6 0.18 3.9E-06 62.0 8.4 38 322-359 298-337 (564)
376 COG1136 SalX ABC-type antimicr 93.6 0.18 3.9E-06 54.6 7.3 59 418-477 143-203 (226)
377 cd01131 PilT Pilus retraction 93.6 0.088 1.9E-06 55.9 4.8 35 340-374 3-37 (198)
378 PRK13900 type IV secretion sys 93.5 0.11 2.5E-06 59.5 5.9 47 331-379 153-199 (332)
379 PRK14086 dnaA chromosomal repl 93.5 0.51 1.1E-05 58.1 11.7 36 339-374 315-351 (617)
380 PF03354 Terminase_1: Phage Te 93.4 0.26 5.6E-06 59.5 9.2 146 327-478 2-165 (477)
381 PRK12901 secA preprotein trans 93.4 0.073 1.6E-06 67.8 4.4 118 321-445 167-300 (1112)
382 TIGR02525 plasmid_TraJ plasmid 93.4 0.15 3.2E-06 59.5 6.6 22 336-357 147-168 (372)
383 PRK11331 5-methylcytosine-spec 93.3 0.41 8.9E-06 56.8 10.3 34 326-359 182-215 (459)
384 TIGR01074 rep ATP-dependent DN 93.3 0.14 3.1E-06 64.2 6.9 66 325-392 3-71 (664)
385 COG1474 CDC6 Cdc6-related prot 93.3 0.47 1E-05 55.3 10.6 23 340-363 44-66 (366)
386 PF00158 Sigma54_activat: Sigm 93.3 0.54 1.2E-05 48.7 10.0 42 329-371 13-54 (168)
387 cd01121 Sms Sms (bacterial rad 93.3 0.14 2.9E-06 59.8 6.1 50 335-386 79-128 (372)
388 COG1121 ZnuC ABC-type Mn/Zn tr 93.2 0.48 1E-05 52.2 9.7 72 412-488 134-208 (254)
389 TIGR03522 GldA_ABC_ATP gliding 93.2 0.14 3E-06 57.9 5.9 68 413-484 129-200 (301)
390 cd03369 ABCC_NFT1 Domain 2 of 93.1 0.3 6.5E-06 51.8 8.1 59 416-478 124-185 (207)
391 TIGR01075 uvrD DNA helicase II 93.0 0.14 3.1E-06 64.7 6.4 67 324-392 5-74 (715)
392 COG4962 CpaF Flp pilus assembl 93.0 0.16 3.5E-06 57.8 6.0 53 325-379 159-212 (355)
393 COG4608 AppF ABC-type oligopep 93.0 0.37 8.1E-06 53.3 8.7 130 335-478 36-171 (268)
394 COG3973 Superfamily I DNA and 93.0 0.17 3.7E-06 60.8 6.5 71 311-387 205-280 (747)
395 cd03213 ABCG_EPDR ABCG transpo 93.0 0.23 5.1E-06 52.3 7.0 125 335-477 32-171 (194)
396 PF13555 AAA_29: P-loop contai 93.0 0.097 2.1E-06 45.2 3.3 18 338-355 23-40 (62)
397 cd03237 ABC_RNaseL_inhibitor_d 93.0 0.45 9.8E-06 52.3 9.5 62 414-477 112-176 (246)
398 COG1119 ModF ABC-type molybden 93.0 0.32 6.9E-06 53.0 7.9 60 417-477 171-233 (257)
399 cd03215 ABC_Carb_Monos_II This 93.0 0.3 6.5E-06 50.8 7.7 129 335-477 23-164 (182)
400 PRK11773 uvrD DNA-dependent he 93.0 0.18 3.9E-06 63.9 7.1 66 324-392 10-79 (721)
401 COG1618 Predicted nucleotide k 93.0 0.71 1.5E-05 47.4 9.8 19 339-357 6-24 (179)
402 cd03255 ABC_MJ0796_Lo1CDE_FtsE 92.9 0.36 7.7E-06 51.6 8.4 60 417-478 140-202 (218)
403 cd01129 PulE-GspE PulE/GspE Th 92.9 0.2 4.3E-06 55.7 6.5 50 323-373 63-114 (264)
404 PRK13695 putative NTPase; Prov 92.9 1.2 2.7E-05 45.9 12.0 20 340-359 2-21 (174)
405 COG4555 NatA ABC-type Na+ tran 92.8 0.13 2.8E-06 54.5 4.5 21 335-355 25-45 (245)
406 cd03227 ABC_Class2 ABC-type Cl 92.8 0.23 4.9E-06 50.9 6.4 22 339-360 22-43 (162)
407 PRK13341 recombination factor 92.8 0.58 1.3E-05 59.1 11.0 21 339-359 53-73 (725)
408 COG1132 MdlB ABC-type multidru 92.7 0.61 1.3E-05 57.4 11.2 23 335-357 352-374 (567)
409 PF12846 AAA_10: AAA-like doma 92.6 0.11 2.4E-06 57.5 4.1 42 338-380 1-42 (304)
410 COG1131 CcmA ABC-type multidru 92.6 0.17 3.8E-06 57.0 5.7 64 412-477 131-197 (293)
411 TIGR02688 conserved hypothetic 92.6 0.42 9.1E-06 56.2 8.8 29 331-359 202-230 (449)
412 CHL00095 clpC Clp protease ATP 92.6 0.34 7.3E-06 62.4 8.9 24 340-364 541-564 (821)
413 cd03232 ABC_PDR_domain2 The pl 92.6 0.28 6E-06 51.6 6.8 127 335-478 30-169 (192)
414 TIGR01547 phage_term_2 phage t 92.6 0.6 1.3E-05 54.8 10.3 132 339-478 2-141 (396)
415 PRK13541 cytochrome c biogenes 92.5 0.065 1.4E-06 56.4 2.0 58 417-477 123-183 (195)
416 KOG0741 AAA+-type ATPase [Post 92.5 0.52 1.1E-05 56.1 9.3 106 340-483 540-655 (744)
417 PF14532 Sigma54_activ_2: Sigm 92.5 0.34 7.4E-06 48.1 6.9 35 327-362 10-44 (138)
418 COG1702 PhoH Phosphate starvat 92.3 0.24 5.2E-06 56.3 6.2 55 321-375 126-181 (348)
419 TIGR01420 pilT_fam pilus retra 92.3 0.18 3.9E-06 58.2 5.4 37 337-374 121-158 (343)
420 PRK06647 DNA polymerase III su 92.3 0.38 8.2E-06 59.1 8.4 30 331-360 28-60 (563)
421 COG1127 Ttg2A ABC-type transpo 92.3 0.31 6.8E-06 52.9 6.7 26 335-360 31-56 (263)
422 PRK06964 DNA polymerase III su 92.3 0.52 1.1E-05 54.4 9.0 55 421-477 118-172 (342)
423 cd03281 ABC_MSH5_euk MutS5 hom 92.3 0.85 1.8E-05 49.0 10.2 22 338-359 29-50 (213)
424 TIGR02655 circ_KaiC circadian 92.3 0.17 3.7E-06 61.1 5.4 94 335-442 260-360 (484)
425 COG2805 PilT Tfp pilus assembl 92.3 0.13 2.8E-06 57.4 3.9 24 338-361 125-148 (353)
426 TIGR00635 ruvB Holliday juncti 92.3 0.86 1.9E-05 51.3 10.7 22 339-360 31-52 (305)
427 PRK13538 cytochrome c biogenes 92.2 0.4 8.7E-06 50.8 7.5 60 415-477 127-189 (204)
428 PRK08058 DNA polymerase III su 92.2 0.28 6.1E-06 56.3 6.7 49 424-474 99-147 (329)
429 KOG0388 SNF2 family DNA-depend 92.1 0.93 2E-05 55.3 10.9 120 526-673 1040-1160(1185)
430 cd00544 CobU Adenosylcobinamid 92.1 0.56 1.2E-05 48.7 8.2 45 341-389 2-46 (169)
431 TIGR03375 type_I_sec_LssB type 92.1 0.31 6.7E-06 61.5 7.6 60 418-478 602-661 (694)
432 TIGR03877 thermo_KaiC_1 KaiC d 92.1 0.17 3.7E-06 55.2 4.6 51 335-387 18-68 (237)
433 TIGR02974 phageshock_pspF psp 92.0 0.71 1.5E-05 53.0 9.8 37 327-364 11-47 (329)
434 PRK11174 cysteine/glutathione 92.0 0.35 7.6E-06 59.7 7.9 59 418-477 486-544 (588)
435 PF05876 Terminase_GpA: Phage 92.0 0.21 4.5E-06 61.4 5.7 68 323-390 16-86 (557)
436 TIGR01189 ccmA heme ABC export 91.9 0.44 9.5E-06 50.2 7.4 59 416-477 126-187 (198)
437 PRK15177 Vi polysaccharide exp 91.9 0.12 2.6E-06 55.4 3.1 24 335-358 10-33 (213)
438 cd03233 ABC_PDR_domain1 The pl 91.8 0.37 7.9E-06 51.2 6.7 70 414-486 115-187 (202)
439 PRK10436 hypothetical protein; 91.8 0.32 6.9E-06 58.3 6.8 50 322-372 200-251 (462)
440 TIGR02639 ClpA ATP-dependent C 91.8 0.73 1.6E-05 58.6 10.4 21 338-358 203-223 (731)
441 TIGR02673 FtsE cell division A 91.7 0.39 8.5E-06 51.1 6.8 59 416-477 136-197 (214)
442 PRK06305 DNA polymerase III su 91.7 0.56 1.2E-05 56.2 8.8 31 330-360 28-61 (451)
443 cd03263 ABC_subfamily_A The AB 91.6 0.48 1E-05 50.6 7.5 66 415-486 131-199 (220)
444 TIGR02524 dot_icm_DotB Dot/Icm 91.6 0.18 4E-06 58.4 4.4 27 331-357 126-153 (358)
445 cd00983 recA RecA is a bacter 91.6 0.26 5.7E-06 56.3 5.6 44 335-379 52-95 (325)
446 cd03226 ABC_cobalt_CbiO_domain 91.6 0.25 5.4E-06 52.4 5.1 61 414-477 123-186 (205)
447 COG1124 DppF ABC-type dipeptid 91.6 0.49 1.1E-05 51.6 7.2 65 418-484 142-210 (252)
448 cd03289 ABCC_CFTR2 The CFTR su 91.5 0.44 9.6E-06 53.3 7.3 59 418-477 139-197 (275)
449 CHL00176 ftsH cell division pr 91.5 0.79 1.7E-05 57.2 10.1 24 338-361 216-239 (638)
450 PRK08769 DNA polymerase III su 91.5 0.7 1.5E-05 52.8 8.9 53 423-477 101-153 (319)
451 TIGR03819 heli_sec_ATPase heli 91.5 1.1 2.5E-05 51.6 10.6 51 327-379 166-217 (340)
452 COG2812 DnaX DNA polymerase II 91.4 0.31 6.7E-06 58.8 6.2 54 423-480 107-160 (515)
453 COG0553 HepA Superfamily II DN 91.4 0.73 1.6E-05 59.2 10.1 112 532-671 713-826 (866)
454 PRK07399 DNA polymerase III su 91.4 1.6 3.4E-05 49.9 11.6 52 422-476 111-162 (314)
455 cd03300 ABC_PotA_N PotA is an 91.4 0.86 1.9E-05 49.3 9.2 62 414-477 127-191 (232)
456 TIGR02857 CydD thiol reductant 91.4 0.54 1.2E-05 57.3 8.4 59 418-477 459-517 (529)
457 PRK06871 DNA polymerase III su 91.3 0.37 8.1E-06 55.2 6.4 53 422-476 94-146 (325)
458 COG3267 ExeA Type II secretory 91.3 1.3 2.7E-05 48.8 10.0 125 331-475 43-172 (269)
459 PRK13540 cytochrome c biogenes 91.3 0.62 1.3E-05 49.2 7.7 58 417-477 127-187 (200)
460 PF06745 KaiC: KaiC; InterPro 91.2 0.18 4E-06 54.2 3.7 37 337-373 18-54 (226)
461 PRK13657 cyclic beta-1,2-gluca 91.2 0.52 1.1E-05 58.3 8.1 59 418-477 472-530 (588)
462 PF03237 Terminase_6: Terminas 91.2 3.1 6.8E-05 47.1 14.0 129 342-477 1-137 (384)
463 TIGR03608 L_ocin_972_ABC putat 91.2 0.66 1.4E-05 49.0 7.8 61 415-478 132-195 (206)
464 TIGR03689 pup_AAA proteasome A 91.2 0.47 1E-05 57.4 7.4 21 337-357 215-235 (512)
465 PRK09354 recA recombinase A; P 91.2 0.34 7.3E-06 55.9 5.9 41 335-376 57-97 (349)
466 cd00984 DnaB_C DnaB helicase C 91.2 0.16 3.6E-06 55.0 3.3 44 331-374 6-49 (242)
467 PRK00080 ruvB Holliday junctio 91.1 0.4 8.6E-06 54.9 6.5 23 339-361 52-74 (328)
468 PHA00729 NTP-binding motif con 91.1 0.43 9.4E-06 51.7 6.4 22 339-360 18-39 (226)
469 KOG0733 Nuclear AAA ATPase (VC 91.0 0.95 2.1E-05 54.8 9.4 138 339-522 546-692 (802)
470 cd03258 ABC_MetN_methionine_tr 91.0 0.75 1.6E-05 49.7 8.2 67 416-486 139-208 (233)
471 PF00265 TK: Thymidine kinase; 91.0 0.41 8.9E-06 50.0 5.8 38 338-376 1-38 (176)
472 cd03231 ABC_CcmA_heme_exporter 91.0 0.6 1.3E-05 49.4 7.2 23 335-357 23-45 (201)
473 PRK11034 clpA ATP-dependent Cl 91.0 0.57 1.2E-05 59.5 8.2 19 340-358 490-508 (758)
474 TIGR03346 chaperone_ClpB ATP-d 90.9 0.91 2E-05 58.7 10.2 23 337-359 193-215 (852)
475 KOG2028 ATPase related to the 90.9 1 2.2E-05 51.5 9.1 27 333-359 155-183 (554)
476 KOG1132 Helicase of the DEAD s 90.9 1.1 2.5E-05 56.1 10.3 117 326-445 28-257 (945)
477 PRK05973 replicative DNA helic 90.9 0.21 4.6E-06 54.6 3.8 57 329-387 55-111 (237)
478 cd03248 ABCC_TAP TAP, the Tran 90.9 0.82 1.8E-05 49.1 8.3 59 415-477 148-209 (226)
479 COG3421 Uncharacterized protei 90.8 1.4 2.9E-05 53.3 10.4 78 409-486 78-176 (812)
480 PHA00149 DNA encapsidation pro 90.8 2.6 5.6E-05 47.0 11.8 144 341-487 20-171 (331)
481 PRK03992 proteasome-activating 90.8 0.63 1.4E-05 54.7 7.9 23 338-360 165-187 (389)
482 PRK11176 lipid transporter ATP 90.8 0.69 1.5E-05 57.0 8.6 59 418-477 481-539 (582)
483 COG0593 DnaA ATPase involved i 90.7 1 2.2E-05 53.0 9.3 41 435-477 175-218 (408)
484 TIGR01277 thiQ thiamine ABC tr 90.6 0.22 4.9E-06 53.1 3.7 60 416-477 127-189 (213)
485 cd03245 ABCC_bacteriocin_expor 90.6 0.26 5.7E-06 52.7 4.2 58 417-478 140-200 (220)
486 cd03251 ABCC_MsbA MsbA is an e 90.6 0.8 1.7E-05 49.5 7.9 57 417-477 138-197 (234)
487 PRK10584 putative ABC transpor 90.6 1 2.2E-05 48.5 8.7 59 417-477 146-207 (228)
488 cd03217 ABC_FeS_Assembly ABC-t 90.6 0.5 1.1E-05 50.0 6.2 129 335-477 23-164 (200)
489 PHA03311 helicase-primase subu 90.5 1.2 2.5E-05 55.4 9.8 45 338-388 71-115 (828)
490 COG2255 RuvB Holliday junction 90.5 0.43 9.2E-06 53.0 5.6 20 339-358 53-72 (332)
491 PRK13537 nodulation ABC transp 90.5 0.63 1.4E-05 52.8 7.4 62 413-477 134-198 (306)
492 cd03254 ABCC_Glucan_exporter_l 90.5 0.35 7.6E-06 52.0 5.1 58 416-477 138-198 (229)
493 PF13207 AAA_17: AAA domain; P 90.5 0.22 4.9E-06 47.7 3.2 18 340-357 1-18 (121)
494 TIGR02982 heterocyst_DevA ABC 90.5 0.68 1.5E-05 49.6 7.2 60 417-478 141-203 (220)
495 cd03244 ABCC_MRP_domain2 Domai 90.4 0.73 1.6E-05 49.3 7.4 24 335-358 27-50 (221)
496 TIGR01192 chvA glucan exporter 90.4 0.67 1.5E-05 57.4 8.1 59 418-477 472-530 (585)
497 TIGR01073 pcrA ATP-dependent D 90.4 0.48 1E-05 60.2 6.9 67 324-392 5-74 (726)
498 PRK04301 radA DNA repair and r 90.4 0.49 1.1E-05 53.9 6.4 29 335-363 99-127 (317)
499 cd03249 ABC_MTABC3_MDL1_MDL2 M 90.4 0.41 8.8E-06 51.9 5.5 58 416-477 138-198 (238)
500 cd03294 ABC_Pro_Gly_Bertaine T 90.3 0.82 1.8E-05 50.8 7.9 60 416-477 159-221 (269)
No 1
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=8.1e-219 Score=1829.35 Aligned_cols=953 Identities=61% Similarity=1.014 Sum_probs=858.6
Q ss_pred ccCCCCC--CCCCCCCCCCCCCCCCCCCCCcCCCCCCcCCCCCCCCCcccCCCcCcCCCcccccCcccccccccCccccC
Q 001722 10 RLVSPLS--TPRSNGYAASPWDHISPSPVPIRASGSSVKSSSSGYSRRSHQLTFSRESSQSFEDGVADETYSEEHNYEIT 87 (1020)
Q Consensus 10 ~~~~~~~--~~~~~~~~~~~~d~~~p~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (1020)
..++.|+ +..++.++.++|++|||+|+ ++..+..++.++. .+|++.+|..|+| |..+++..+...+...
T Consensus 88 ~s~~~w~~~d~~d~~~~r~s~~~pspsp~--~~~~rr~d~~rs~-~~~~~~~~~~p~p------~~~~~~~~~~~~~~s~ 158 (1042)
T KOG0924|consen 88 PSRDFWEQLDSEDNSSRRNSWVQPSPSPT--ERDRRRMDKPRSK-QSRQRSPTVDPSP------NSSDRSQNGHAPTDSR 158 (1042)
T ss_pred cchhhhhhccccCCcccccCCCCCCCCCC--ccchhhhcchhhh-hhccCCCCCCCCC------chhhhhhcCCCCcccc
Confidence 5667898 33444556799998888874 1111112222221 2333444444444 2223332222222222
Q ss_pred hHHHHHHhhhhhhhhccccCCCcccCCCCCCCCCCcchHHHHHHHHHHHHHhhhcCCccchhhhhhhhhhccCchHHHHH
Q 001722 88 ESMRLEMEYNSDRAWYDREEGTTMFDTDSSSFILGDDASYQKKEVELAKRLVRKDGSRMSLAQSKKLSQITADNHQWEER 167 (1020)
Q Consensus 88 ~~~~~~~~~~~dr~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~we~~ 167 (1020)
+..+.|+ -+.||+|||+||+ +|+.++ ||...+ +|+++.++.+ .++.||+.||.|
T Consensus 159 ~~~~~ee-~eedR~WYdnde~---~d~~~n-pf~~~~-----~E~~l~~~~~----------------ki~~dn~~we~n 212 (1042)
T KOG0924|consen 159 EPTRSEE-GEEDREWYDNDEG---GDEVHN-PFSELS-----REAELLEKIQ----------------KINNDNALWETN 212 (1042)
T ss_pred ccccccc-CccchhhhhcCCc---cccccC-chhcch-----hHHHHHHHHH----------------hhcchhhhhhhh
Confidence 2223222 1228999999998 555565 665533 6777765431 278999999999
Q ss_pred HHHHcCCccccCCCCCcCccccceEEEEecCCCCCCcCccccccccCCCccCCCCCCChHHHHHHhCChhhHHHHHHHHH
Q 001722 168 QLLRSGAVRGTELSTEFDDEEEHKVILLVHDTKPPFLDGRIVFTKQAEPVMPIKDPTSDMAIISRKGSALVREIREKQTQ 247 (1020)
Q Consensus 168 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~p~fl~g~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~~~~~~~~~~~~ 247 (1020)
||++|||+.+.+++.||.++++.+ ++||+++||||+|+.+++++.+||.||+||++|+|+.|++||.+|+++|+++++
T Consensus 213 rl~~sgvv~~~e~~~~f~~~e~~~--llv~~i~~~fld~r~~~~k~~~~v~pv~d~~sd~a~~a~~gs~lv~~~r~~~~~ 290 (1042)
T KOG0924|consen 213 RLLTSGVVQRMEVISDFLSDEARE--LLVHNIVPPFLDGREVFTKQAEPVIPVRDPTSDLAISARRGSKLVRERREKEER 290 (1042)
T ss_pred cccchhhhhcccccCccchhhHHH--hhhhcccCCccccceeeecccccccccCCCchhhhhhhhccccHHHHHHHhhhh
Confidence 999999999999999998887776 899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhHhhhccccccccccccccccccccccccCccCccccccchhhhhhhhcccccchhhhhHHHHHHHcCCCcHHH
Q 001722 248 NKSRQRFWELAGSQMGNILGVKKTAEQVDADTAVVGEQGEIDFREDAKFSQHMKKGEAVSDFAKSKTLAEQRQYLPIFSV 327 (1020)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~~LPi~~~ 327 (1020)
++..+.+|++++++|||++|+++..+ +++.++++...+|+.|+++.++.+.|+..+.+.+||+.||||.+
T Consensus 291 ~k~~~~~~~~~~~~lgn~~glek~~~----------ed~~~~~~~~~~~a~h~k~~~a~~~fa~~k~i~eqrq~LPvf~~ 360 (1042)
T KOG0924|consen 291 KKAQKKHWKLAGTALGNVMGLEKKND----------EDGKVAYRGSVKFASHMKKSEAVSEFASKKSIREQRQYLPVFAC 360 (1042)
T ss_pred hhhhhhhhhhcchhhccccccccCcc----------cccccccccchhhhhccccccccccccccchHHHHHhhcchHHH
Confidence 99999999999999999999987653 45677888888999999988888999999999999999999999
Q ss_pred HHHHHHHHHhCCeEEEEecCCCchHHHHHHHHHHhcccCCCEEEEEcccHHHHHHHHHHHHHHhccccCCEEEEEEeeee
Q 001722 328 RDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELGDKVGYAIRFED 407 (1020)
Q Consensus 328 q~eil~~i~~~q~vII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~lA~qva~rva~e~~~~lG~~VGy~ir~e~ 407 (1020)
+++++..|..|++|||+|+||||||||++|||++++|..+|.|+||||||++|++||+||++||+..+|..|||+|||++
T Consensus 361 R~~ll~~ir~n~vvvivgETGSGKTTQl~QyL~edGY~~~GmIGcTQPRRvAAiSVAkrVa~EM~~~lG~~VGYsIRFEd 440 (1042)
T KOG0924|consen 361 RDQLLSVIRENQVVVIVGETGSGKTTQLAQYLYEDGYADNGMIGCTQPRRVAAISVAKRVAEEMGVTLGDTVGYSIRFED 440 (1042)
T ss_pred HHHHHHHHhhCcEEEEEecCCCCchhhhHHHHHhcccccCCeeeecCchHHHHHHHHHHHHHHhCCccccccceEEEeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCccEEEEchHHHHHHHhcCCCCCCccEEEEeCCCcCCCCccHHHHHHHHHHhhcCCceEEEEeccCCHHHHHHHhC
Q 001722 408 VTGPSTLIKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTSATLNAQKFSDFFG 487 (1020)
Q Consensus 408 ~~s~~t~I~~~T~g~LLr~ll~d~~L~~~s~IIIDEaHERs~~tD~ll~lLk~il~~r~~lklIlmSATld~~~f~~~f~ 487 (1020)
++++.|.|+|||+|+|||+.+.|..|.+|++|||||||||++++|+|+++||.++++|.++|+|++|||||+++|++|||
T Consensus 441 vT~~~T~IkymTDGiLLrEsL~d~~L~kYSviImDEAHERslNtDilfGllk~~larRrdlKliVtSATm~a~kf~nfFg 520 (1042)
T KOG0924|consen 441 VTSEDTKIKYMTDGILLRESLKDRDLDKYSVIIMDEAHERSLNTDILFGLLKKVLARRRDLKLIVTSATMDAQKFSNFFG 520 (1042)
T ss_pred cCCCceeEEEeccchHHHHHhhhhhhhheeEEEechhhhcccchHHHHHHHHHHHHhhccceEEEeeccccHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEeecCcccceeeeecCCCchhHHHHHHHHHHHHhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHHHhhccccCCCCC
Q 001722 488 SVPIFHIPGRTFPVNTLYSKTPCEDYVEAAVKQAMTIHITSPPGDILIFMTGQDEIEAACFALKERMEQLISSTTREVPE 567 (1020)
Q Consensus 488 ~~pvi~i~gr~~pV~i~y~~~~~~dyl~~av~~~l~i~~~~~~g~ILVFl~g~~eie~l~~~L~e~l~~l~~~~~~~~~~ 567 (1020)
+||.|+||||+|||++.|.+.|++||++++++++++||...++|+||||++|+++|+.+|..+.+.+.++.... ..+
T Consensus 521 n~p~f~IpGRTyPV~~~~~k~p~eDYVeaavkq~v~Ihl~~~~GdilIfmtGqediE~t~~~i~~~l~ql~~~~---~~~ 597 (1042)
T KOG0924|consen 521 NCPQFTIPGRTYPVEIMYTKTPVEDYVEAAVKQAVQIHLSGPPGDILIFMTGQEDIECTCDIIKEKLEQLDSAP---TTD 597 (1042)
T ss_pred CCceeeecCCccceEEEeccCchHHHHHHHHhhheEeeccCCCCCEEEecCCCcchhHHHHHHHHHHHhhhcCC---CCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999998874322 248
Q ss_pred eEEEEecCCCCHHHHHHHHHHhcCCCeEEEEecchhhccCCCCCeeEEEEcCCccceeccCCCCcccccccccCHHHHHH
Q 001722 568 LLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAETSLTVDGIFYVIDTGYGKMKVYNPKMGMDALQVFPVSRAAADQ 647 (1020)
Q Consensus 568 l~vl~lhs~L~~~eq~~I~~~f~~g~rkVIVATniaEtGItIp~V~~VID~G~~K~~~yd~~~g~~~L~~~piS~as~~Q 647 (1020)
+.|+|+||+||.+.|.+||+..+.|.+||||||||||||||||||.|||||||+|.++|||+.||++|+++|||+|++.|
T Consensus 598 L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~AnA~Q 677 (1042)
T KOG0924|consen 598 LAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLKVYNPRIGMDALQIVPISQANADQ 677 (1042)
T ss_pred eEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceeecceEEEEecCceeeeecccccccceeEEEechhccchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcccCCCCCCEEEEccChhhHhhccCCCCcchhcccchhHHHHHHhhcccCcccCCCCCCCCChhhHHHHHHHHHHhcC
Q 001722 648 RAGRAGRTGPGTCYRLYTESAYLNEMLPSPVPEIQRTNLGNVVLLLKSLKIDNLLDFDFMDPPPQENILNSMYQLWVLGA 727 (1020)
Q Consensus 648 RaGRAGR~g~G~cyrLyt~~~~~~~m~~~~~PEI~r~~L~~vvL~lk~lgi~~~~~f~~~dpP~~~~i~~al~~L~~lga 727 (1020)
|+|||||+|||.||||||+..|.++|.+.++|||+|+||.++||+||++|+++++.|+||||||.+.+..||+.||.|||
T Consensus 678 RaGRAGRt~pG~cYRlYTe~ay~~eml~stvPEIqRTNl~nvVLlLkslgV~dll~FdFmD~Pped~~~~sly~Lw~LGA 757 (1042)
T KOG0924|consen 678 RAGRAGRTGPGTCYRLYTEDAYKNEMLPSTVPEIQRTNLSNVVLLLKSLGVDDLLKFDFMDPPPEDNLLNSLYQLWTLGA 757 (1042)
T ss_pred hccccCCCCCcceeeehhhhHHHhhcccCCCchhhhcchhhHHHHHHhcChhhhhCCCcCCCCHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCccHHHHHhhcCCCChHHHHHHhhhhccCcHHHHHHHHHHhCCCCcccCCcchHHHHHHHHhhhccCCCcHHHHH
Q 001722 728 LNNVGALTDLGWKMVEFPLDPPLAKMLLMGEQLGCLDEVLTIVSMLSVPSVFFRPKDRAEESDAAREKFFVQESDHLTLL 807 (1020)
Q Consensus 728 Ld~~g~LT~lG~~ma~lPldp~lak~ll~~~~~~c~~e~l~I~a~ls~~~~f~~p~~~~~~~~~~r~~f~~~~sDhltll 807 (1020)
||+.|.||++|+.|++|||||.|+||||.|+.+||++|||+||||||++.+|++|+++.++++++|++|++++|||||||
T Consensus 758 l~~~g~LT~lG~~MvefpLDP~lsKmll~a~~~Gc~dEilsIvSmLSvp~VF~rpker~eead~ar~Kf~~~~sDhLTlL 837 (1042)
T KOG0924|consen 758 LDNTGQLTPLGRKMVEFPLDPPLSKMLLMAARMGCSDEILSIVSMLSVPAVFYRPKEREEEADAAREKFQVPESDHLTLL 837 (1042)
T ss_pred cccCCccchhhHHhhhCCCCchHHHHHHHHhccCcHHHHHHHHHHhcccceeeccccchhhhhhHHhhhcCCCCchhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhhhhhHhhccChHHHHHHHHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHhhccchhhhhcCCceeEE
Q 001722 808 YVYQQWKEHQYRGDWCEEHYLHVKSLRKAREVRSQLLDILKTLKIPLTSSGHDFDVVRKAICSAYFHNAARLKGVGEYIN 887 (1020)
Q Consensus 808 ~vy~~w~~~~~~~~wc~~~~l~~~~l~~a~~ir~qL~~~l~~~~~~~~s~~~~~~~i~~~l~~g~~~nvA~~~~~g~y~~ 887 (1020)
|||++|++++++..||++|||+.++|++|+++|.||+.||+.+++|+.|| .+||+|+||||+|||+|+|++++.|.|++
T Consensus 838 NVf~qw~~~~~~~~WCnd~~l~~kaL~~arevR~ql~~il~~l~~~l~S~-~dwdivrKCIcs~~fhn~Arlkg~g~YV~ 916 (1042)
T KOG0924|consen 838 NVFNQWRKNKYSSMWCNDHYLQVKALKKAREVRRQLLEILKQLKLPLISS-DDWDIVRKCICSAYFHNAARLKGIGEYVN 916 (1042)
T ss_pred HHHHHHHhcCCchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHcCCCcccC-chHHHHHHHHHHHHHHHHHHhccCceEEE
Confidence 99999999999999999999999999999999999999999999999999 89999999999999999999999999999
Q ss_pred ecCCcceeeCCCCcccCCCCCCCceeeeeeecchhhhhhhccccCHHHHHhhCCcceeecCCcchhHHhhhhhhhhHHHH
Q 001722 888 CRNGMPCHLHPSSAIYGLGYTPEYVVYHELILTTKEYMQCATAVEPQWLSELGPMFFSVKDSDTSMLEHKKKQKESKTAM 967 (1020)
Q Consensus 888 ~~~~~~v~lHPsS~l~~~~~~p~~vvy~el~~t~k~y~r~vt~i~~~wL~e~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 967 (1020)
+++|.+|+|||||+|+++ +.|+||||||+++|+|+||+|||+|+|+||+|+||+||++++...+ +++...+++...|
T Consensus 917 ~~tg~~c~lHPsS~L~g~-y~p~Yivyhel~~T~keym~cvT~v~~~wl~E~gp~~y~ik~~~~s--e~k~~~~ed~~~~ 993 (1042)
T KOG0924|consen 917 LSTGIPCHLHPSSVLHGL-YTPDYIVYHELLMTTKEYMQCVTSVSPEWLAELGPMFYSIKEAVTS--EHKHPVVEDGSDM 993 (1042)
T ss_pred ccCCcceeecchHhhhcC-CCCCeeeehHHHHhHHHHHHHHhhCCHHHHHHhCceeEeccccccc--hhccccccccchh
Confidence 999999999999999998 8999999999999999999999999999999999999999988765 8888889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccceeeccCCCCCCCCccCCcCC
Q 001722 968 EEEMENLRKIQADEERENKAKEREKRVKERQQVSMPGWRQGSTTYLRPKKF 1018 (1020)
Q Consensus 968 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1018 (1020)
|++|..+.......+.+.+... .+...+..+|.+||.+++.| +++|+|+
T Consensus 994 e~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~k~~~~~~~~e~~-~k~~~r~ 1042 (1042)
T KOG0924|consen 994 EEEMFKAARDLVGRRLESKKAS-DKNYKRSTKINEPGEKKEEP-PKKPRRI 1042 (1042)
T ss_pred hhhHHHHHHHHHHhhccchhcc-ccchhhhhhhcCccccccCC-CCCCCCC
Confidence 9999887754444332332222 22355678999999999874 4556663
No 2
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.2e-162 Score=1369.10 Aligned_cols=634 Identities=53% Similarity=0.941 Sum_probs=618.5
Q ss_pred hhHHHHHHHcCCCcHHHHHHHHHHHHhCCeEEEEecCCCchHHHHHHHHHHhcccCCCE-EEEEcccHHHHHHHHHHHHH
Q 001722 311 KSKTLAEQRQYLPIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGI-VGCTQPRRVAAMSVAKRVSE 389 (1020)
Q Consensus 311 ~~~~l~~~R~~LPi~~~q~eil~~i~~~q~vII~gpTGSGKTtqi~q~Lle~~~~~~~~-Il~tqPrR~lA~qva~rva~ 389 (1020)
..++|.+.|+.||||.+++++|.+|.++|++||+|+||||||||+||||++.+|..+++ |+||||||++|++||.||++
T Consensus 253 ~~~~iee~RksLPVy~ykdell~av~e~QVLiI~GeTGSGKTTQiPQyL~EaGytk~gk~IgcTQPRRVAAmSVAaRVA~ 332 (902)
T KOG0923|consen 253 RRESIEEVRKSLPVYPYKDELLKAVKEHQVLIIVGETGSGKTTQIPQYLYEAGYTKGGKKIGCTQPRRVAAMSVAARVAE 332 (902)
T ss_pred HHHHHHHHHhcCCchhhHHHHHHHHHhCcEEEEEcCCCCCccccccHHHHhcccccCCceEeecCcchHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999998886 99999999999999999999
Q ss_pred HhccccCCEEEEEEeeeecCCCCccEEEEchHHHHHHHhcCCCCCCccEEEEeCCCcCCCCccHHHHHHHHHHhhcCCce
Q 001722 390 EMDTELGDKVGYAIRFEDVTGPSTLIKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFK 469 (1020)
Q Consensus 390 e~~~~lG~~VGy~ir~e~~~s~~t~I~~~T~g~LLr~ll~d~~L~~~s~IIIDEaHERs~~tD~ll~lLk~il~~r~~lk 469 (1020)
|||+.+|.+|||+|||++|++..|.|+|||+|||+|+++.+|+|..||+|||||||||+++||+|+++++++...||++|
T Consensus 333 EMgvkLG~eVGYsIRFEdcTSekTvlKYMTDGmLlREfL~epdLasYSViiiDEAHERTL~TDILfgLvKDIar~RpdLK 412 (902)
T KOG0923|consen 333 EMGVKLGHEVGYSIRFEDCTSEKTVLKYMTDGMLLREFLSEPDLASYSVIIVDEAHERTLHTDILFGLVKDIARFRPDLK 412 (902)
T ss_pred HhCcccccccceEEEeccccCcceeeeeecchhHHHHHhccccccceeEEEeehhhhhhhhhhHHHHHHHHHHhhCCcce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeccCCHHHHHHHhCCCCeEeecCcccceeeeecCCCchhHHHHHHHHHHHHhhcCCCCCEEEEcCCHHHHHHHHHH
Q 001722 470 LIVTSATLNAQKFSDFFGSVPIFHIPGRTFPVNTLYSKTPCEDYVEAAVKQAMTIHITSPPGDILIFMTGQDEIEAACFA 549 (1020)
Q Consensus 470 lIlmSATld~~~f~~~f~~~pvi~i~gr~~pV~i~y~~~~~~dyl~~av~~~l~i~~~~~~g~ILVFl~g~~eie~l~~~ 549 (1020)
++++|||+|+++|+.||+++|||.+|||.|||+++|...|..||+++++.++++||.+++.|+||||++|+++|+.+++.
T Consensus 413 llIsSAT~DAekFS~fFDdapIF~iPGRRyPVdi~Yt~~PEAdYldAai~tVlqIH~tqp~GDILVFltGQeEIEt~~e~ 492 (902)
T KOG0923|consen 413 LLISSATMDAEKFSAFFDDAPIFRIPGRRYPVDIFYTKAPEADYLDAAIVTVLQIHLTQPLGDILVFLTGQEEIETVKEN 492 (902)
T ss_pred EEeeccccCHHHHHHhccCCcEEeccCcccceeeecccCCchhHHHHHHhhheeeEeccCCccEEEEeccHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHHHhcCCCeEEEEecchhhccCCCCCeeEEEEcCCccceeccCC
Q 001722 550 LKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAETSLTVDGIFYVIDTGYGKMKVYNPK 629 (1020)
Q Consensus 550 L~e~l~~l~~~~~~~~~~l~vl~lhs~L~~~eq~~I~~~f~~g~rkVIVATniaEtGItIp~V~~VID~G~~K~~~yd~~ 629 (1020)
|.+++..+. .....+.|+|+|++||.+.|.+||++.|+|.||||+|||||||||||+||.||||+||+|++.|||+
T Consensus 493 l~~~~~~LG----ski~eliv~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlTIdgI~yViDpGf~K~nsynpr 568 (902)
T KOG0923|consen 493 LKERCRRLG----SKIRELIVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTIDGIKYVIDPGFVKQNSYNPR 568 (902)
T ss_pred HHHHHHHhc----cccceEEEeeccccCChHHHHhhcCCCCCCceeEEEeecchhhceeecCeEEEecCccccccCcCCC
Confidence 998887774 3457899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccccccCHHHHHHHhcccCCCCCCEEEEccChhhHhhccCCCCcchhcccchhHHHHHHhhcccCcccCCCCCCC
Q 001722 630 MGMDALQVFPVSRAAADQRAGRAGRTGPGTCYRLYTESAYLNEMLPSPVPEIQRTNLGNVVLLLKSLKIDNLLDFDFMDP 709 (1020)
Q Consensus 630 ~g~~~L~~~piS~as~~QRaGRAGR~g~G~cyrLyt~~~~~~~m~~~~~PEI~r~~L~~vvL~lk~lgi~~~~~f~~~dp 709 (1020)
+||.+|.+.|||+|++.||+|||||+|||+||||||...|.+++...++|||+|+||.++||.||+|||+|+.+||||||
T Consensus 569 tGmesL~v~piSKAsA~QRaGRAGRtgPGKCfRLYt~~aY~~eLE~~t~PEIqRtnL~nvVL~LkSLGI~Dl~~FdFmDp 648 (902)
T KOG0923|consen 569 TGMESLLVTPISKASANQRAGRAGRTGPGKCFRLYTAWAYEHELEEMTVPEIQRTNLGNVVLLLKSLGIHDLIHFDFLDP 648 (902)
T ss_pred cCceeEEEeeechhhhhhhccccCCCCCCceEEeechhhhhhhhccCCCcceeeccchhHHHHHHhcCcchhcccccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHhcCccCCCCccHHHHHhhcCCCChHHHHHHhhhhccCcHHHHHHHHHHhCC-CCcccCCcchHHH
Q 001722 710 PPQENILNSMYQLWVLGALNNVGALTDLGWKMVEFPLDPPLAKMLLMGEQLGCLDEVLTIVSMLSV-PSVFFRPKDRAEE 788 (1020)
Q Consensus 710 P~~~~i~~al~~L~~lgaLd~~g~LT~lG~~ma~lPldp~lak~ll~~~~~~c~~e~l~I~a~ls~-~~~f~~p~~~~~~ 788 (1020)
||.+++..||++|+.|||||+.|+||.+|++|++||+||.|||||+.+..++|++||++||||||+ +++|++|+++...
T Consensus 649 Pp~etL~~aLE~LyaLGALn~~GeLTk~GrrMaEfP~dPmlsKmi~as~ky~cs~EiitiaamlS~~~svfyrpk~~~v~ 728 (902)
T KOG0923|consen 649 PPTETLLKALEQLYALGALNHLGELTKLGRRMAEFPVDPMLSKMIVASEKYKCSEEIITIAAMLSVGASVFYRPKDKQVH 728 (902)
T ss_pred CChHHHHHHHHHHHHhhccccccchhhhhhhhhhcCCCHHHHhHHhhhccccchHHHHHHHHHHhcCchheecchhhhhh
Confidence 999999999999999999999999999999999999999999999999999999999999999998 4799999999999
Q ss_pred HHHHHhhhccCCCcHHHHHHHHHHHHhhhhhhhhhHhhccChHHHHHHHHHHHHHHHHHHhcCCCCCCCCCChHHHHHHH
Q 001722 789 SDAAREKFFVQESDHLTLLYVYQQWKEHQYRGDWCEEHYLHVKSLRKAREVRSQLLDILKTLKIPLTSSGHDFDVVRKAI 868 (1020)
Q Consensus 789 ~~~~r~~f~~~~sDhltll~vy~~w~~~~~~~~wc~~~~l~~~~l~~a~~ir~qL~~~l~~~~~~~~s~~~~~~~i~~~l 868 (1020)
+|.++..|..+.|||+++|++|++|+..+++.+||.+||+++++|.+|++||.||..++.+.++...|+..+.+.||+||
T Consensus 729 ad~a~~~f~~~~gDhi~~L~vyn~w~es~~s~~wC~e~~iq~~sm~rardir~qL~gll~~v~~~~~s~~~~~~~irk~i 808 (902)
T KOG0923|consen 729 ADNARKNFEEPVGDHIVLLNVYNQWKESKYSTQWCYENFIQYRSMKRARDIRDQLEGLLERVEIDLSSNQNDLDKIRKAI 808 (902)
T ss_pred hhhhhhccCCCCcchhhhhHHHHHHhhcchhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhccccccCChHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999888888889999999
Q ss_pred HhhccchhhhhcCCceeEEecCCcceeeCCCCcccCCCCCCCceeeeeeecchhhhhhhccccCHHHHHhhCCcceeecC
Q 001722 869 CSAYFHNAARLKGVGEYINCRNGMPCHLHPSSAIYGLGYTPEYVVYHELILTTKEYMQCATAVEPQWLSELGPMFFSVKD 948 (1020)
Q Consensus 869 ~~g~~~nvA~~~~~g~y~~~~~~~~v~lHPsS~l~~~~~~p~~vvy~el~~t~k~y~r~vt~i~~~wL~e~~p~~~~~~~ 948 (1020)
.+|||+|+|++...|.|.++...+.|++||.|+||+ ..|.||||||+|+|+|+|||.++.+.++||.|++||||+.++
T Consensus 809 ~aGff~h~a~l~~~g~y~tvk~~~tv~~hp~S~l~~--~~P~wvvy~eLv~tske~mr~~~e~e~~Wlie~aphyyk~kd 886 (902)
T KOG0923|consen 809 TAGFFYHTAKLSKGGHYRTVKHPQTVSIHPNSGLFE--QLPRWVVYHELVLTSKEFMRQVIEIEEEWLIEVAPHYYKLKD 886 (902)
T ss_pred hccccccceeccCCCcceeeccCcceeecCcccccc--cCCceEEEeehhcChHHHHHHHHhhhhhHHHHhchhhhhhhh
Confidence 999999999999999999999999999999999997 578999999999999999999999999999999999999877
Q ss_pred Cc
Q 001722 949 SD 950 (1020)
Q Consensus 949 ~~ 950 (1020)
..
T Consensus 887 le 888 (902)
T KOG0923|consen 887 LE 888 (902)
T ss_pred cc
Confidence 53
No 3
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.2e-159 Score=1370.10 Aligned_cols=630 Identities=55% Similarity=0.963 Sum_probs=611.5
Q ss_pred hhHHHHHHHcCCCcHHHHHHHHHHHHhCCeEEEEecCCCchHHHHHHHHHHhcccCCCEEEEEcccHHHHHHHHHHHHHH
Q 001722 311 KSKTLAEQRQYLPIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEE 390 (1020)
Q Consensus 311 ~~~~l~~~R~~LPi~~~q~eil~~i~~~q~vII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~lA~qva~rva~e 390 (1020)
...++.++|+.|||++++.+|+.++.+|+++||+|+||||||||+||||++.++...|+|+||||||++|+++|+||++|
T Consensus 39 ~~~~i~~qR~~LPI~~~r~~il~~ve~nqvlIviGeTGsGKSTQipQyL~eaG~~~~g~I~~TQPRRVAavslA~RVAeE 118 (674)
T KOG0922|consen 39 TNLSIQEQRESLPIYKYRDQILYAVEDNQVLIVIGETGSGKSTQIPQYLAEAGFASSGKIACTQPRRVAAVSLAKRVAEE 118 (674)
T ss_pred cccCHHHhhccCCHHHHHHHHHHHHHHCCEEEEEcCCCCCccccHhHHHHhcccccCCcEEeecCchHHHHHHHHHHHHH
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccccCCEEEEEEeeeecCCCCccEEEEchHHHHHHHhcCCCCCCccEEEEeCCCcCCCCccHHHHHHHHHHhhcCCceE
Q 001722 391 MDTELGDKVGYAIRFEDVTGPSTLIKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKL 470 (1020)
Q Consensus 391 ~~~~lG~~VGy~ir~e~~~s~~t~I~~~T~g~LLr~ll~d~~L~~~s~IIIDEaHERs~~tD~ll~lLk~il~~r~~lkl 470 (1020)
+++.+|..|||.|||++++++.|+|+|||+|+|||+++.||.|++|++|||||||||+++||+|+++||+++++|+++|+
T Consensus 119 ~~~~lG~~VGY~IRFed~ts~~TrikymTDG~LLRE~l~Dp~LskYsvIIlDEAHERsl~TDiLlGlLKki~~~R~~Lkl 198 (674)
T KOG0922|consen 119 MGCQLGEEVGYTIRFEDSTSKDTRIKYMTDGMLLREILKDPLLSKYSVIILDEAHERSLHTDILLGLLKKILKKRPDLKL 198 (674)
T ss_pred hCCCcCceeeeEEEecccCCCceeEEEecchHHHHHHhcCCccccccEEEEechhhhhhHHHHHHHHHHHHHhcCCCceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeccCCHHHHHHHhCCCCeEeecCcccceeeeecCCCchhHHHHHHHHHHHHhhcCCCCCEEEEcCCHHHHHHHHHHH
Q 001722 471 IVTSATLNAQKFSDFFGSVPIFHIPGRTFPVNTLYSKTPCEDYVEAAVKQAMTIHITSPPGDILIFMTGQDEIEAACFAL 550 (1020)
Q Consensus 471 IlmSATld~~~f~~~f~~~pvi~i~gr~~pV~i~y~~~~~~dyl~~av~~~l~i~~~~~~g~ILVFl~g~~eie~l~~~L 550 (1020)
|+||||+|+++|++||++||++.|+||.|||+++|.+.+..||+.+++..+++||.++++|+|||||+|++||+.+|+.|
T Consensus 199 IimSATlda~kfS~yF~~a~i~~i~GR~fPVei~y~~~p~~dYv~a~~~tv~~Ih~~E~~GDILvFLtGqeEIe~~~~~l 278 (674)
T KOG0922|consen 199 IIMSATLDAEKFSEYFNNAPILTIPGRTFPVEILYLKEPTADYVDAALITVIQIHLTEPPGDILVFLTGQEEIEAACELL 278 (674)
T ss_pred EEEeeeecHHHHHHHhcCCceEeecCCCCceeEEeccCCchhhHHHHHHHHHHHHccCCCCCEEEEeCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHHHhcCCCeEEEEecchhhccCCCCCeeEEEEcCCccceeccCCC
Q 001722 551 KERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAETSLTVDGIFYVIDTGYGKMKVYNPKM 630 (1020)
Q Consensus 551 ~e~l~~l~~~~~~~~~~l~vl~lhs~L~~~eq~~I~~~f~~g~rkVIVATniaEtGItIp~V~~VID~G~~K~~~yd~~~ 630 (1020)
.+..+.+. .+.+. .++|+||.||.++|.+||++.+.|.||||+||||||||||||||.||||+|++|++.|||++
T Consensus 279 ~e~~~~~~----~~~~~-~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVDsG~vK~~~y~p~~ 353 (674)
T KOG0922|consen 279 RERAKSLP----EDCPE-LILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVDSGFVKQKKYNPRT 353 (674)
T ss_pred HHHhhhcc----ccCcc-eeeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeEEecceEEEEcCCceEEEeecccc
Confidence 98766542 23333 89999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccccccCHHHHHHHhcccCCCCCCEEEEccChhhHhhccCCCCcchhcccchhHHHHHHhhcccCcccCCCCCCCC
Q 001722 631 GMDALQVFPVSRAAADQRAGRAGRTGPGTCYRLYTESAYLNEMLPSPVPEIQRTNLGNVVLLLKSLKIDNLLDFDFMDPP 710 (1020)
Q Consensus 631 g~~~L~~~piS~as~~QRaGRAGR~g~G~cyrLyt~~~~~~~m~~~~~PEI~r~~L~~vvL~lk~lgi~~~~~f~~~dpP 710 (1020)
|+++|.+.|+|++++.||+|||||++||+|||||++++| +.|++.++|||+|+||+.++|+||++|++|++.|+|||||
T Consensus 354 g~~~L~v~~ISkasA~QRaGRAGRt~pGkcyRLYte~~~-~~~~~~~~PEI~R~~Ls~~vL~Lkalgi~d~l~F~f~d~P 432 (674)
T KOG0922|consen 354 GLDSLIVVPISKASANQRAGRAGRTGPGKCYRLYTESAY-DKMPLQTVPEIQRVNLSSAVLQLKALGINDPLRFPFIDPP 432 (674)
T ss_pred CccceeEEechHHHHhhhcccCCCCCCceEEEeeeHHHH-hhcccCCCCceeeechHHHHHHHHhcCCCCcccCCCCCCC
Confidence 999999999999999999999999999999999999999 7899999999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHhcCccCCCCccH-HHHHhhcCCCChHHHHHHhhhhccCcHHHHHHHHHHhCCCCcccCCcchHHH-
Q 001722 711 PQENILNSMYQLWVLGALNNVGALTD-LGWKMVEFPLDPPLAKMLLMGEQLGCLDEVLTIVSMLSVPSVFFRPKDRAEE- 788 (1020)
Q Consensus 711 ~~~~i~~al~~L~~lgaLd~~g~LT~-lG~~ma~lPldp~lak~ll~~~~~~c~~e~l~I~a~ls~~~~f~~p~~~~~~- 788 (1020)
+.+++..||+.|+.+||||++|.||. +|+.|++|||+|.++|||+.+..+||++|+++||||||+.++|++|.+...+
T Consensus 433 ~~~~l~~AL~~L~~lgald~~g~lt~p~G~~ma~~Pl~p~lsk~ll~s~~~gc~~e~l~i~a~Lsv~~~f~~p~~~~~~~ 512 (674)
T KOG0922|consen 433 PPEALEEALEELYSLGALDDRGKLTSPLGRQMAELPLEPHLSKMLLKSSELGCSEEILTIAAMLSVQSVFSRPKDKKAED 512 (674)
T ss_pred ChHHHHHHHHHHHhcCcccCcCCcCchHHhhhhhcCCCcchhhhhhhccccCCcchhhhheeeeeccceecCccchhhhh
Confidence 99999999999999999999999998 9999999999999999999999999999999999999999999999998887
Q ss_pred HHHHHhhhccCCCcHHHHHHHHHHHHhhhhhhhhhHhhccChHHHHHHHHHHHHHHHHHHhcCCCCCCCCCChHHHHHHH
Q 001722 789 SDAAREKFFVQESDHLTLLYVYQQWKEHQYRGDWCEEHYLHVKSLRKAREVRSQLLDILKTLKIPLTSSGHDFDVVRKAI 868 (1020)
Q Consensus 789 ~~~~r~~f~~~~sDhltll~vy~~w~~~~~~~~wc~~~~l~~~~l~~a~~ir~qL~~~l~~~~~~~~s~~~~~~~i~~~l 868 (1020)
++..|.+|.+++|||+|+||+|..|..++.+..||.+||||.++|++|.+||+||..++++++++..+|+.|.+.|++||
T Consensus 513 a~~~~~kf~~~eGDh~tlL~vy~~~~~~~~~~~wC~en~i~~r~l~~a~~ir~QL~~i~~~~~~~~~s~~~d~~~i~k~l 592 (674)
T KOG0922|consen 513 ADRKRAKFANPEGDHLTLLNVYESWKENGTSKKWCKENFINARSLKRAKDIRKQLRRILDKFGLPVSSCGGDMEKIRKCL 592 (674)
T ss_pred hhHHHHhhcCcccCHHHHHHHHHHHHhcCChhhHHHHhcccHHHHHHHHHHHHHHHHHHHHcCCCccCCCCCHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hhhccchhhhhc-CCceeEEecCCcceeeCCCCcccCCCCCCCceeeeeeecchhhhhhhccccCHHHHHhhCCcceeec
Q 001722 869 CSAYFHNAARLK-GVGEYINCRNGMPCHLHPSSAIYGLGYTPEYVVYHELILTTKEYMQCATAVEPQWLSELGPMFFSVK 947 (1020)
Q Consensus 869 ~~g~~~nvA~~~-~~g~y~~~~~~~~v~lHPsS~l~~~~~~p~~vvy~el~~t~k~y~r~vt~i~~~wL~e~~p~~~~~~ 947 (1020)
|+|||.|+|++. +.| |.++.+|.+|+|||||+||.. +|+||||||++.|+|.|||+||+|+++||.+++|+||+..
T Consensus 593 ~aGff~N~A~~~~~~~-Yrti~~~~~v~IHPSS~l~~~--~p~~viy~el~~Ttk~Y~r~Vt~i~~~wL~e~ap~~~~~~ 669 (674)
T KOG0922|consen 593 CAGFFRNVAERDYQDG-YRTIRGGQPVYIHPSSVLFRR--KPEWVIYHELLQTTKEYMRNVTAIDPEWLLELAPHFFKQS 669 (674)
T ss_pred HHHHHHHHHHhhcCCC-eEEccCCcEEEEechHHhhcC--CCCEEEEEEEeecchHhHhheeecCHHHHHHhCchHhhcc
Confidence 999999999997 556 999999999999999999974 5999999999999999999999999999999999998776
Q ss_pred CC
Q 001722 948 DS 949 (1020)
Q Consensus 948 ~~ 949 (1020)
+.
T Consensus 670 ~~ 671 (674)
T KOG0922|consen 670 DE 671 (674)
T ss_pred cc
Confidence 54
No 4
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.6e-148 Score=1224.27 Aligned_cols=631 Identities=48% Similarity=0.853 Sum_probs=605.3
Q ss_pred hhhHHHHHHHcCCCcHHHHHHHHHHHHhCCeEEEEecCCCchHHHHHHHHHHhcccCCCEEEEEcccHHHHHHHHHHHHH
Q 001722 310 AKSKTLAEQRQYLPIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSE 389 (1020)
Q Consensus 310 ~~~~~l~~~R~~LPi~~~q~eil~~i~~~q~vII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~lA~qva~rva~ 389 (1020)
.++.+|++.|..||||.+++++++.+.+||.+|++|+||||||||+|||+++......+.|+||||+|++|+++|.||++
T Consensus 34 ~rY~~ilk~R~~LPvw~~k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~~~~v~CTQprrvaamsva~RVad 113 (699)
T KOG0925|consen 34 QRYYDILKKRRELPVWEQKEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELSHLTGVACTQPRRVAAMSVAQRVAD 113 (699)
T ss_pred HHHHHHHHHHhcCchHHhHHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHHHhhccceeecCchHHHHHHHHHHHHH
Confidence 35678999999999999999999999999999999999999999999999998777778899999999999999999999
Q ss_pred HhccccCCEEEEEEeeeecCCCCccEEEEchHHHHHHHhcCCCCCCccEEEEeCCCcCCCCccHHHHHHHHHHhhcCCce
Q 001722 390 EMDTELGDKVGYAIRFEDVTGPSTLIKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFK 469 (1020)
Q Consensus 390 e~~~~lG~~VGy~ir~e~~~s~~t~I~~~T~g~LLr~ll~d~~L~~~s~IIIDEaHERs~~tD~ll~lLk~il~~r~~lk 469 (1020)
||...+|.+|||+|+|++|++++|.++|||+|||+|+.++++.|..|++||+||||||++.||+|+|+||+++..+|++|
T Consensus 114 EMDv~lG~EVGysIrfEdC~~~~T~Lky~tDgmLlrEams~p~l~~y~viiLDeahERtlATDiLmGllk~v~~~rpdLk 193 (699)
T KOG0925|consen 114 EMDVTLGEEVGYSIRFEDCTSPNTLLKYCTDGMLLREAMSDPLLGRYGVIILDEAHERTLATDILMGLLKEVVRNRPDLK 193 (699)
T ss_pred HhccccchhccccccccccCChhHHHHHhcchHHHHHHhhCcccccccEEEechhhhhhHHHHHHHHHHHHHHhhCCCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeccCCHHHHHHHhCCCCeEeecCcccceeeeecCCCchhHHHHHHHHHHHHhhcCCCCCEEEEcCCHHHHHHHHHH
Q 001722 470 LIVTSATLNAQKFSDFFGSVPIFHIPGRTFPVNTLYSKTPCEDYVEAAVKQAMTIHITSPPGDILIFMTGQDEIEAACFA 549 (1020)
Q Consensus 470 lIlmSATld~~~f~~~f~~~pvi~i~gr~~pV~i~y~~~~~~dyl~~av~~~l~i~~~~~~g~ILVFl~g~~eie~l~~~ 549 (1020)
+|+||||+++.+|..||+++|++.||| +|||+++|.+.+..||+++++.++++||..+.+|+||||++|.++|+.+|+.
T Consensus 194 ~vvmSatl~a~Kfq~yf~n~Pll~vpg-~~PvEi~Yt~e~erDylEaairtV~qih~~ee~GDilvFLtgeeeIe~aC~~ 272 (699)
T KOG0925|consen 194 LVVMSATLDAEKFQRYFGNAPLLAVPG-THPVEIFYTPEPERDYLEAAIRTVLQIHMCEEPGDILVFLTGEEEIEDACRK 272 (699)
T ss_pred EEEeecccchHHHHHHhCCCCeeecCC-CCceEEEecCCCChhHHHHHHHHHHHHHhccCCCCEEEEecCHHHHHHHHHH
Confidence 999999999999999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHHHhcCC-----CeEEEEecchhhccCCCCCeeEEEEcCCccce
Q 001722 550 LKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEG-----TRKCIVATNIAETSLTVDGIFYVIDTGYGKMK 624 (1020)
Q Consensus 550 L~e~l~~l~~~~~~~~~~l~vl~lhs~L~~~eq~~I~~~f~~g-----~rkVIVATniaEtGItIp~V~~VID~G~~K~~ 624 (1020)
+......+ ......+.|+|+| +.+|.+||++.+.. .|||||+|||||++++|++|.||||+|+.|++
T Consensus 273 i~re~~~L----~~~~g~l~v~PLy----P~~qq~iFep~p~~~~~~~~RkvVvstniaetsltidgiv~VIDpGf~kqk 344 (699)
T KOG0925|consen 273 ISREVDNL----GPQVGPLKVVPLY----PAQQQRIFEPAPEKRNGAYGRKVVVSTNIAETSLTIDGIVFVIDPGFSKQK 344 (699)
T ss_pred HHHHHHhh----ccccCCceEEecC----chhhccccCCCCcccCCCccceEEEEecchheeeeeccEEEEecCchhhhc
Confidence 98666555 3566789999999 67788999988743 48999999999999999999999999999999
Q ss_pred eccCCCCcccccccccCHHHHHHHhcccCCCCCCEEEEccChhhHhhccCCCCcchhcccchhHHHHHHhhcccCcccCC
Q 001722 625 VYNPKMGMDALQVFPVSRAAADQRAGRAGRTGPGTCYRLYTESAYLNEMLPSPVPEIQRTNLGNVVLLLKSLKIDNLLDF 704 (1020)
Q Consensus 625 ~yd~~~g~~~L~~~piS~as~~QRaGRAGR~g~G~cyrLyt~~~~~~~m~~~~~PEI~r~~L~~vvL~lk~lgi~~~~~f 704 (1020)
+|||+.+..+|.+.|||++++.||+|||||+.||+||||||++.|..+|.+.+.|||+|+||+++||+||.+||+++.+|
T Consensus 345 VYNPRIRvesllv~PISkasA~qR~gragrt~pGkcfrLYte~~~~~em~~~typeilrsNL~s~VL~LKklgI~dlvhf 424 (699)
T KOG0925|consen 345 VYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEEAFEKEMQPQTYPEILRSNLSSTVLQLKKLGIDDLVHF 424 (699)
T ss_pred ccCcceeeeeeeeccchHhHHHHHhhhccCCCCCceEEeecHHhhhhcCCCCCcHHHHHHhhHHHHHHHHhcCcccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCChhhHHHHHHHHHHhcCccCCCCccHHHHHhhcCCCChHHHHHHhhhhccCcHHHHHHHHHHhCCCCcccCCc-
Q 001722 705 DFMDPPPQENILNSMYQLWVLGALNNVGALTDLGWKMVEFPLDPPLAKMLLMGEQLGCLDEVLTIVSMLSVPSVFFRPK- 783 (1020)
Q Consensus 705 ~~~dpP~~~~i~~al~~L~~lgaLd~~g~LT~lG~~ma~lPldp~lak~ll~~~~~~c~~e~l~I~a~ls~~~~f~~p~- 783 (1020)
+|||||.++++++|++.|..|+|||++|+||++|..|++|||||.++||||.+++|+|++|+++|+||||+|+.|++|.
T Consensus 425 dfmDpPAPEtLMrALE~LnYLaaLdDdGnLT~lG~imSEFPLdPqLAkmLi~S~efnCsnEiLsisAMLsvPncFvRp~~ 504 (699)
T KOG0925|consen 425 DFMDPPAPETLMRALEVLNYLAALDDDGNLTSLGEIMSEFPLDPQLAKMLIGSCEFNCSNEILSISAMLSVPNCFVRPTS 504 (699)
T ss_pred cCCCCCChHHHHHHHHHhhhhhhhCCCcccchhhhhhhcCCCChHHHHHHhhcCCCCchHHHHHHHhcccCCccccCCCh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHhhhccCCCcHHHHHHHHHHHHhhhhhhhhhHhhccChHHHHHHHHHHHHHHHHHHhcCCCCCCCC----C
Q 001722 784 DRAEESDAAREKFFVQESDHLTLLYVYQQWKEHQYRGDWCEEHYLHVKSLRKAREVRSQLLDILKTLKIPLTSSG----H 859 (1020)
Q Consensus 784 ~~~~~~~~~r~~f~~~~sDhltll~vy~~w~~~~~~~~wc~~~~l~~~~l~~a~~ir~qL~~~l~~~~~~~~s~~----~ 859 (1020)
+.++.++.+++.|.+++|||+||||||.+|+++....+||.+||||+++|+.|.+||.||.++|+++++++.+.. .
T Consensus 505 ~a~kaAdeak~~faH~dGDHlTLlnVYhAfkq~~~~~~WC~~~flN~ral~~Ad~vR~qL~rim~R~~L~~~st~F~S~~ 584 (699)
T KOG0925|consen 505 SASKAADEAKETFAHIDGDHLTLLNVYHAFKQNNEDPNWCYDNFLNYRALKSADNVRQQLLRIMDRFNLPLCSTDFGSRD 584 (699)
T ss_pred hHHHHHHHHHHHhccCCcchHHHHHHHHHHHhcCCChhHHHHhcccHHHHHhHHHHHHHHHHHHHHhcCcccCCCCCChh
Confidence 777788999999999999999999999999999989999999999999999999999999999999999886542 3
Q ss_pred ChHHHHHHHHhhccchhhhhcCCceeEEecCCcceeeCCCCcccCCCCCCCceeeeeeecchhhhhhhccccCHHHHHhh
Q 001722 860 DFDVVRKAICSAYFHNAARLKGVGEYINCRNGMPCHLHPSSAIYGLGYTPEYVVYHELILTTKEYMQCATAVEPQWLSEL 939 (1020)
Q Consensus 860 ~~~~i~~~l~~g~~~nvA~~~~~g~y~~~~~~~~v~lHPsS~l~~~~~~p~~vvy~el~~t~k~y~r~vt~i~~~wL~e~ 939 (1020)
++..|||||++|||++||+....|.|+++.+++.|+|||+++|- .+|+||+|||++.|+|+|||.||.|.|+||.++
T Consensus 585 y~~nirKALvsgyFmqVA~~~~~~~Ylt~kdnqvvqLhps~~l~---~~PeWVlyneFvlt~~N~ir~vt~I~pewlv~l 661 (699)
T KOG0925|consen 585 YYVNIRKALVSGYFMQVAHLERGGHYLTVKDNQVVQLHPSTCLD---HKPEWVLYNEFVLTTKNFIRTVTDIRPEWLVEL 661 (699)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCCceEEEecCceEEeccccccC---CCCCeEEEeeEEeeccceeeeecccCHHHHHHh
Confidence 46789999999999999999888899999999999999999986 479999999999999999999999999999999
Q ss_pred CCcceeecCCcch
Q 001722 940 GPMFFSVKDSDTS 952 (1020)
Q Consensus 940 ~p~~~~~~~~~~~ 952 (1020)
+|+||+..+...+
T Consensus 662 aP~YydlsNfp~~ 674 (699)
T KOG0925|consen 662 APQYYDLSNFPPS 674 (699)
T ss_pred chhhcccccCCch
Confidence 9999999887644
No 5
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=100.00 E-value=2.9e-123 Score=1159.45 Aligned_cols=616 Identities=37% Similarity=0.632 Sum_probs=572.3
Q ss_pred HHHHcCCCcHHHHHHHHHHHHhCCeEEEEecCCCchHHHHHHHHHHhcccCCCEEEEEcccHHHHHHHHHHHHHHhcccc
Q 001722 316 AEQRQYLPIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTEL 395 (1020)
Q Consensus 316 ~~~R~~LPi~~~q~eil~~i~~~q~vII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~lA~qva~rva~e~~~~l 395 (1020)
...+..|||+.++++|+.+|.+|+++||+|+||||||||+|+++++.+....+.|+||||||++|.++|.||+++++..+
T Consensus 67 ~~~~~~LPi~~~r~~Il~ai~~~~VviI~GeTGSGKTTqlPq~lle~g~g~~g~I~~TQPRRlAArsLA~RVA~El~~~l 146 (1294)
T PRK11131 67 ITYPENLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICLELGRGVKGLIGHTQPRRLAARTVANRIAEELETEL 146 (1294)
T ss_pred cCCCCCCCHHHHHHHHHHHHHhCCeEEEECCCCCCHHHHHHHHHHHcCCCCCCceeeCCCcHHHHHHHHHHHHHHHhhhh
Confidence 34578899999999999999999999999999999999999999998776667999999999999999999999999999
Q ss_pred CCEEEEEEeeeecCCCCccEEEEchHHHHHHHhcCCCCCCccEEEEeCCCcCCCCccHHHHHHHHHHhhcCCceEEEEec
Q 001722 396 GDKVGYAIRFEDVTGPSTLIKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTSA 475 (1020)
Q Consensus 396 G~~VGy~ir~e~~~s~~t~I~~~T~g~LLr~ll~d~~L~~~s~IIIDEaHERs~~tD~ll~lLk~il~~r~~lklIlmSA 475 (1020)
|..|||.++|+++.+.+|+|+|||+|+|++++..++.|++|++|||||||||++++|+++++|+.++..++++|+|+|||
T Consensus 147 G~~VGY~vrf~~~~s~~t~I~v~TpG~LL~~l~~d~~Ls~~~~IIIDEAHERsLn~DfLLg~Lk~lL~~rpdlKvILmSA 226 (1294)
T PRK11131 147 GGCVGYKVRFNDQVSDNTMVKLMTDGILLAEIQQDRLLMQYDTIIIDEAHERSLNIDFILGYLKELLPRRPDLKVIITSA 226 (1294)
T ss_pred cceeceeecCccccCCCCCEEEEChHHHHHHHhcCCccccCcEEEecCccccccccchHHHHHHHhhhcCCCceEEEeeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999889999999999
Q ss_pred cCCHHHHHHHhCCCCeEeecCcccceeeeecCCCc------hhHHHHHHHHHHHHhhcCCCCCEEEEcCCHHHHHHHHHH
Q 001722 476 TLNAQKFSDFFGSVPIFHIPGRTFPVNTLYSKTPC------EDYVEAAVKQAMTIHITSPPGDILIFMTGQDEIEAACFA 549 (1020)
Q Consensus 476 Tld~~~f~~~f~~~pvi~i~gr~~pV~i~y~~~~~------~dyl~~av~~~l~i~~~~~~g~ILVFl~g~~eie~l~~~ 549 (1020)
|++.+.|++||+++|++.++|+.|||+++|..... .+++...+..+..++ ...+|+|||||||+.+|+.+++.
T Consensus 227 Tid~e~fs~~F~~apvI~V~Gr~~pVei~y~p~~~~~~~~~~d~l~~ll~~V~~l~-~~~~GdILVFLpg~~EIe~lae~ 305 (1294)
T PRK11131 227 TIDPERFSRHFNNAPIIEVSGRTYPVEVRYRPIVEEADDTERDQLQAIFDAVDELG-REGPGDILIFMSGEREIRDTADA 305 (1294)
T ss_pred CCCHHHHHHHcCCCCEEEEcCccccceEEEeecccccchhhHHHHHHHHHHHHHHh-cCCCCCEEEEcCCHHHHHHHHHH
Confidence 99999999999999999999999999999976532 345665555544443 45679999999999999999998
Q ss_pred HHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHHHhcCCCeEEEEecchhhccCCCCCeeEEEEcCCccceeccCC
Q 001722 550 LKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAETSLTVDGIFYVIDTGYGKMKVYNPK 629 (1020)
Q Consensus 550 L~e~l~~l~~~~~~~~~~l~vl~lhs~L~~~eq~~I~~~f~~g~rkVIVATniaEtGItIp~V~~VID~G~~K~~~yd~~ 629 (1020)
|.+. ..+...|+++||+|+.++|.++|+. .|.++|||||||||+|||||+|+||||+|++|++.||++
T Consensus 306 L~~~----------~~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI~yVID~Gl~k~~~Yd~~ 373 (1294)
T PRK11131 306 LNKL----------NLRHTEILPLYARLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSYR 373 (1294)
T ss_pred HHhc----------CCCcceEeecccCCCHHHHHHHhcc--cCCeeEEEeccHHhhccccCcceEEEECCCccccccccc
Confidence 8652 2345679999999999999999986 578999999999999999999999999999999999999
Q ss_pred CCcccccccccCHHHHHHHhcccCCCCCCEEEEccChhhHhhccCCCCcchhcccchhHHHHHHhhcccCcccCCCCCCC
Q 001722 630 MGMDALQVFPVSRAAADQRAGRAGRTGPGTCYRLYTESAYLNEMLPSPVPEIQRTNLGNVVLLLKSLKIDNLLDFDFMDP 709 (1020)
Q Consensus 630 ~g~~~L~~~piS~as~~QRaGRAGR~g~G~cyrLyt~~~~~~~m~~~~~PEI~r~~L~~vvL~lk~lgi~~~~~f~~~dp 709 (1020)
+|++.|.+.|+|+++|.||+|||||+++|+||+||++.+| ..+++++.|||+|++|.+++|+++++|+.++..|+|+||
T Consensus 374 ~~~~~Lp~~~iSkasa~QRaGRAGR~~~G~c~rLyte~d~-~~~~~~~~PEIlR~~L~~viL~lk~lgl~di~~F~fldp 452 (1294)
T PRK11131 374 TKVQRLPIEPISQASANQRKGRCGRVSEGICIRLYSEDDF-LSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEA 452 (1294)
T ss_pred cCcccCCeeecCHhhHhhhccccCCCCCcEEEEeCCHHHH-HhhhcccCCccccCCHHHHHHHHHHcCCCCcceeeCCCC
Confidence 9999999999999999999999999999999999999999 458899999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHhcCccCC-----CCccHHHHHhhcCCCChHHHHHHhhhhccCcHHHHHHHHHHhCCCCcccCCcc
Q 001722 710 PPQENILNSMYQLWVLGALNNV-----GALTDLGWKMVEFPLDPPLAKMLLMGEQLGCLDEVLTIVSMLSVPSVFFRPKD 784 (1020)
Q Consensus 710 P~~~~i~~al~~L~~lgaLd~~-----g~LT~lG~~ma~lPldp~lak~ll~~~~~~c~~e~l~I~a~ls~~~~f~~p~~ 784 (1020)
|+.++|..|++.|+.+||||.+ ++||++|+.|+.||+||++||||+.|+.+||++|+++||||||++++|++|.+
T Consensus 453 P~~~~i~~al~~L~~LgAld~~~~~~~~~LT~lG~~la~LPldPrlakmLl~a~~~~c~~evl~IaA~Lsv~dpf~~p~~ 532 (1294)
T PRK11131 453 PDKRNIQDGVRLLEELGAITTDEQASAYKLTPLGRQLAQLPVDPRLARMVLEAQKHGCVREVMIITSALSIQDPRERPMD 532 (1294)
T ss_pred CCHHHHHHHHHHHHHCCCCCccccCCCccCcHHHHHHHhCCCChHHHHHHHHhhhcCCHHHHHHHHHHHcCCCcccCCch
Confidence 9999999999999999999854 57999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhhhccCCCcHHHHHHHHHHHHhhhh------hhhhhHhhccChHHHHHHHHHHHHHHHHHHhcCCCCCCCC
Q 001722 785 RAEESDAAREKFFVQESDHLTLLYVYQQWKEHQY------RGDWCEEHYLHVKSLRKAREVRSQLLDILKTLKIPLTSSG 858 (1020)
Q Consensus 785 ~~~~~~~~r~~f~~~~sDhltll~vy~~w~~~~~------~~~wc~~~~l~~~~l~~a~~ir~qL~~~l~~~~~~~~s~~ 858 (1020)
++++++.++.+|..++|||||+||+|+.|..... ...||++||||+++|+++.+++.||..+++++|++.+++.
T Consensus 533 ~~~~a~~~~~~f~~~~sD~lt~ln~~~~~~~~~~~~s~~~~~~~C~~~~L~~~~l~e~~~i~~QL~~~~~~~g~~~~~~~ 612 (1294)
T PRK11131 533 KQQASDEKHRRFADKESDFLAFVNLWNYLQEQQKALSSNQFRRLCRTDYLNYLRVREWQDIYTQLRQVVKELGIPVNSEP 612 (1294)
T ss_pred hHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCc
Confidence 9999999999999999999999999999975322 2479999999999999999999999999999999998888
Q ss_pred CChHHHHHHHHhhccchhhhhcCCc-eeEEecCCcceeeCCCCcccCCCCCCCceeeeeeecchhhhhhhccccCHHHHH
Q 001722 859 HDFDVVRKAICSAYFHNAARLKGVG-EYINCRNGMPCHLHPSSAIYGLGYTPEYVVYHELILTTKEYMQCATAVEPQWLS 937 (1020)
Q Consensus 859 ~~~~~i~~~l~~g~~~nvA~~~~~g-~y~~~~~~~~v~lHPsS~l~~~~~~p~~vvy~el~~t~k~y~r~vt~i~~~wL~ 937 (1020)
.+++.|++|||+|||.|+|++...+ .|.+.+ +..|+|||+|+||+ .+|+||||+|++.|++.|||+|+.|+|+||.
T Consensus 613 ~~~~~i~~all~G~~~nva~~~~~~~~y~~~~-~~~~~ihP~S~L~~--~~p~wvv~~Elv~Tsr~y~r~va~I~p~Wl~ 689 (1294)
T PRK11131 613 AEYREIHTALLTGLLSHIGMKDAEKQEYTGAR-NARFSIFPGSGLFK--KPPKWVMVAELVETSRLWGRIAARIEPEWIE 689 (1294)
T ss_pred ccHHHHHHHHHhhcHHHHeeccCCCCeEEccC-CcEEEEcCCccccC--CCCCEEEEEeeeccChhhhhhhcccCHHHHH
Confidence 8999999999999999999987654 577654 77899999999997 4799999999999999999999999999999
Q ss_pred hhCCcceeecC
Q 001722 938 ELGPMFFSVKD 948 (1020)
Q Consensus 938 e~~p~~~~~~~ 948 (1020)
+++|++|+...
T Consensus 690 ~~a~~l~~~~y 700 (1294)
T PRK11131 690 PLAQHLIKRSY 700 (1294)
T ss_pred HHHHHhccccC
Confidence 99999976543
No 6
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=7.9e-122 Score=1113.74 Aligned_cols=626 Identities=44% Similarity=0.692 Sum_probs=581.9
Q ss_pred hhHHHHHHHcCCCcHHHHHHHHHHHHhCCeEEEEecCCCchHHHHHHHHHHhcccCCCEEEEEcccHHHHHHHHHHHHHH
Q 001722 311 KSKTLAEQRQYLPIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEE 390 (1020)
Q Consensus 311 ~~~~l~~~R~~LPi~~~q~eil~~i~~~q~vII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~lA~qva~rva~e 390 (1020)
+...+.+.|..|||+.++.+|+.+|.+|+++||+||||||||||+|++|++.++..+++|+||||||++|.++|+||+++
T Consensus 38 ~~~~~~~~~~~LPv~~~~~~i~~ai~~~~vvii~getGsGKTTqlP~~lle~g~~~~g~I~~tQPRRlAArsvA~RvAee 117 (845)
T COG1643 38 NVPDILEYRSGLPVTAVRDEILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGLGIAGKIGCTQPRRLAARSVAERVAEE 117 (845)
T ss_pred ccchhhhccccCCcHHHHHHHHHHHHhCCEEEEeCCCCCChHHHHHHHHHhhhcccCCeEEecCchHHHHHHHHHHHHHH
Confidence 45678899999999999999999999999999999999999999999999999987889999999999999999999999
Q ss_pred hccccCCEEEEEEeeeecCCCCccEEEEchHHHHHHHhcCCCCCCccEEEEeCCCcCCCCccHHHHHHHHHHhhcC-Cce
Q 001722 391 MDTELGDKVGYAIRFEDVTGPSTLIKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRR-DFK 469 (1020)
Q Consensus 391 ~~~~lG~~VGy~ir~e~~~s~~t~I~~~T~g~LLr~ll~d~~L~~~s~IIIDEaHERs~~tD~ll~lLk~il~~r~-~lk 469 (1020)
+++.+|+.|||.|||++++++.|+|+|||+|+|+++++.|+.|+.|++|||||||||++++|++++++++++..++ ++|
T Consensus 118 l~~~~G~~VGY~iRfe~~~s~~Trik~mTdGiLlrei~~D~~Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~DLK 197 (845)
T COG1643 118 LGEKLGETVGYSIRFESKVSPRTRIKVMTDGILLREIQNDPLLSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDDLK 197 (845)
T ss_pred hCCCcCceeeEEEEeeccCCCCceeEEeccHHHHHHHhhCcccccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCCCce
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999887766 799
Q ss_pred EEEEeccCCHHHHHHHhCCCCeEeecCcccceeeeecCCCchhH-HHHHHHHHHHHhhcCCCCCEEEEcCCHHHHHHHHH
Q 001722 470 LIVTSATLNAQKFSDFFGSVPIFHIPGRTFPVNTLYSKTPCEDY-VEAAVKQAMTIHITSPPGDILIFMTGQDEIEAACF 548 (1020)
Q Consensus 470 lIlmSATld~~~f~~~f~~~pvi~i~gr~~pV~i~y~~~~~~dy-l~~av~~~l~i~~~~~~g~ILVFl~g~~eie~l~~ 548 (1020)
+|+||||+|.++|+.||+++|++.++||+|||+++|.+.+..|| +..++..++.+|..+..|+|||||||+.+|+.+++
T Consensus 198 iIimSATld~~rfs~~f~~apvi~i~GR~fPVei~Y~~~~~~d~~l~~ai~~~v~~~~~~~~GdILvFLpG~~EI~~~~~ 277 (845)
T COG1643 198 LIIMSATLDAERFSAYFGNAPVIEIEGRTYPVEIRYLPEAEADYILLDAIVAAVDIHLREGSGSILVFLPGQREIERTAE 277 (845)
T ss_pred EEEEecccCHHHHHHHcCCCCEEEecCCccceEEEecCCCCcchhHHHHHHHHHHHhccCCCCCEEEECCcHHHHHHHHH
Confidence 99999999999999999999999999999999999999888899 99999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHHHhcCCCeEEEEecchhhccCCCCCeeEEEEcCCccceeccC
Q 001722 549 ALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAETSLTVDGIFYVIDTGYGKMKVYNP 628 (1020)
Q Consensus 549 ~L~e~l~~l~~~~~~~~~~l~vl~lhs~L~~~eq~~I~~~f~~g~rkVIVATniaEtGItIp~V~~VID~G~~K~~~yd~ 628 (1020)
.|.+. . ..+.+.|+|+||.|+.++|.+||++.+.|+||||+||||||||||||||+||||+|++|.++||+
T Consensus 278 ~L~~~--~-------l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~~ 348 (845)
T COG1643 278 WLEKA--E-------LGDDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDP 348 (845)
T ss_pred HHHhc--c-------ccCCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEecCCccccccccc
Confidence 99861 1 12578999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccccccccCHHHHHHHhcccCCCCCCEEEEccChhhHhhccCCCCcchhcccchhHHHHHHhhcccC-cccCCCCC
Q 001722 629 KMGMDALQVFPVSRAAADQRAGRAGRTGPGTCYRLYTESAYLNEMLPSPVPEIQRTNLGNVVLLLKSLKID-NLLDFDFM 707 (1020)
Q Consensus 629 ~~g~~~L~~~piS~as~~QRaGRAGR~g~G~cyrLyt~~~~~~~m~~~~~PEI~r~~L~~vvL~lk~lgi~-~~~~f~~~ 707 (1020)
++|++.|.+.|||+|++.||+|||||++||+|||||++++|. .|+.++.|||+|+||+.++|+|+++|+. |+..|+|+
T Consensus 349 ~~g~~~L~~~~ISqAsA~QRaGRAGR~~pGicyRLyse~~~~-~~~~~t~PEIlrtdLs~~vL~l~~~G~~~d~~~f~fl 427 (845)
T COG1643 349 RTGLTRLETEPISKASADQRAGRAGRTGPGICYRLYSEEDFL-AFPEFTLPEILRTDLSGLVLQLKSLGIGQDIAPFPFL 427 (845)
T ss_pred ccCceeeeEEEechhhhhhhccccccCCCceEEEecCHHHHH-hcccCCChhhhhcchHHHHHHHHhcCCCCCcccCccC
Confidence 999999999999999999999999999999999999999996 8999999999999999999999999995 99999999
Q ss_pred CCCChhhHHHHHHHHHHhcCccCCCCccHHHHHhhcCCCChHHHHHHhhhhccCcHHHHHHHHHHhCCCC---cccCCcc
Q 001722 708 DPPPQENILNSMYQLWVLGALNNVGALTDLGWKMVEFPLDPPLAKMLLMGEQLGCLDEVLTIVSMLSVPS---VFFRPKD 784 (1020)
Q Consensus 708 dpP~~~~i~~al~~L~~lgaLd~~g~LT~lG~~ma~lPldp~lak~ll~~~~~~c~~e~l~I~a~ls~~~---~f~~p~~ 784 (1020)
|||+..++..|+..|+.|||||+.|.||++|+.|+.||+||++|+||+.|..+||+.|+++||||||+++ .|..+.+
T Consensus 428 d~P~~~~i~~A~~~L~~LGAld~~g~LT~lG~~ms~lpldprLA~mLl~a~~~g~~~e~~~Ias~Ls~~~~~s~~~~~~~ 507 (845)
T COG1643 428 DPPPEAAIQAALTLLQELGALDDSGKLTPLGKQMSLLPLDPRLARMLLTAPEGGCLGEAATIASMLSEQDRESDFSRDVK 507 (845)
T ss_pred CCCChHHHHHHHHHHHHcCCcCCCCCCCHHHHHHHhCCCChHHHHHHHhccccCcHHHHHHHHHhhccCCCcchhccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999 6888877
Q ss_pred hHH---HHHHHH-hhhcc---CCCcHHHHHHHHHHHHhhh------hhhhhhHhhccChHHHHHHHHHHHHHHHHHHh-c
Q 001722 785 RAE---ESDAAR-EKFFV---QESDHLTLLYVYQQWKEHQ------YRGDWCEEHYLHVKSLRKAREVRSQLLDILKT-L 850 (1020)
Q Consensus 785 ~~~---~~~~~r-~~f~~---~~sDhltll~vy~~w~~~~------~~~~wc~~~~l~~~~l~~a~~ir~qL~~~l~~-~ 850 (1020)
... ..+.++ .++.. +.+||+++|++|..|.... ...+||..++++.++|.++..++.+++..+.. .
T Consensus 508 ~~~~~~~~~~~~~l~~~~~~~~~~d~~~ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~i~~~~l~~~~~~~ 587 (845)
T COG1643 508 LRKQRTAQDLLKRLKRRNAADPRGDHLLLLEAFPDRIARKRAKGEYLRANGCRAMLFPTKALSRAPWIIAALLVQTSALA 587 (845)
T ss_pred hhhHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHhhhccchhhHhcChhhhcCChhHHHhhHHHHHHHHHhhhccc
Confidence 666 444444 44555 7899999999999998876 56799999999999999999999999988877 5
Q ss_pred CCCCCCCCC------------------ChHHHHHHHHhhccchhhhhcCCce-eEEecCCcceeeCCCCc-ccCCCCCCC
Q 001722 851 KIPLTSSGH------------------DFDVVRKAICSAYFHNAARLKGVGE-YINCRNGMPCHLHPSSA-IYGLGYTPE 910 (1020)
Q Consensus 851 ~~~~~s~~~------------------~~~~i~~~l~~g~~~nvA~~~~~g~-y~~~~~~~~v~lHPsS~-l~~~~~~p~ 910 (1020)
+.++..... .|+.+++|+++||+.|++++...+. |+++.++..|++||+|+ ++ ...++
T Consensus 588 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~v~~~--~~~~~ 665 (845)
T COG1643 588 GRILAAAEIDEDEWAAQHLPEHCYSEPIWDDIRGALAAGRKLNIAQLQLDGRPYVTLSDNTPVFAHPSSVRLG--LVLLE 665 (845)
T ss_pred cchhhhcccCcchhhhhhhhhhhccchhHHHHhhhhhhheecceeeeeccccccccCCCCceeEecchhHhhc--ccCcc
Confidence 543332222 3688999999999999999876655 99999999999999995 33 36799
Q ss_pred ceeeeeeecchhhhhh-----------hccccCHHHHHhhCC---cceeecC
Q 001722 911 YVVYHELILTTKEYMQ-----------CATAVEPQWLSELGP---MFFSVKD 948 (1020)
Q Consensus 911 ~vvy~el~~t~k~y~r-----------~vt~i~~~wL~e~~p---~~~~~~~ 948 (1020)
|++|++.+.|++.|++ +++++.+.||.+..+ +|+....
T Consensus 666 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~wL~~~~~~~~~~~~~~~ 717 (845)
T COG1643 666 WIKYAEFLRTRKGYLREGRGERWPDVQTLIELLKLWLKEQVKGLRGLDGLTK 717 (845)
T ss_pred hHHHHHHHHHHHHHHhhcccccCcccchHhhhHHHhhhhhccccchhhhhhh
Confidence 9999999999999999 699999999999887 5554433
No 7
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=3.3e-119 Score=1127.18 Aligned_cols=616 Identities=38% Similarity=0.655 Sum_probs=571.9
Q ss_pred HHHHHcCCCcHHHHHHHHHHHHhCCeEEEEecCCCchHHHHHHHHHHhcccCCCEEEEEcccHHHHHHHHHHHHHHhccc
Q 001722 315 LAEQRQYLPIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTE 394 (1020)
Q Consensus 315 l~~~R~~LPi~~~q~eil~~i~~~q~vII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~lA~qva~rva~e~~~~ 394 (1020)
+...+..|||+.++++|+++|.+|+++||+|+||||||||+|+++++.+....++|+|+||||++|.++|.||++++|..
T Consensus 59 ~~~~~~~LPi~~~~~~Il~~l~~~~vvii~g~TGSGKTTqlPq~lle~~~~~~~~I~~tQPRRlAA~svA~RvA~elg~~ 138 (1283)
T TIGR01967 59 EIRYPDNLPVSAKREDIAEAIAENQVVIIAGETGSGKTTQLPKICLELGRGSHGLIGHTQPRRLAARTVAQRIAEELGTP 138 (1283)
T ss_pred cccCCCCCCHHHHHHHHHHHHHhCceEEEeCCCCCCcHHHHHHHHHHcCCCCCceEecCCccHHHHHHHHHHHHHHhCCC
Confidence 34557789999999999999999999999999999999999999999887767899999999999999999999999999
Q ss_pred cCCEEEEEEeeeecCCCCccEEEEchHHHHHHHhcCCCCCCccEEEEeCCCcCCCCccHHHHHHHHHHhhcCCceEEEEe
Q 001722 395 LGDKVGYAIRFEDVTGPSTLIKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTS 474 (1020)
Q Consensus 395 lG~~VGy~ir~e~~~s~~t~I~~~T~g~LLr~ll~d~~L~~~s~IIIDEaHERs~~tD~ll~lLk~il~~r~~lklIlmS 474 (1020)
+|..|||.++|+++.+.+|+|+|||+|+|++++..|+.|.+|++|||||||||++++|+++++++.++..++++|+|+||
T Consensus 139 lG~~VGY~vR~~~~~s~~T~I~~~TdGiLLr~l~~d~~L~~~~~IIIDEaHERsL~~D~LL~lLk~il~~rpdLKlIlmS 218 (1283)
T TIGR01967 139 LGEKVGYKVRFHDQVSSNTLVKLMTDGILLAETQQDRFLSRYDTIIIDEAHERSLNIDFLLGYLKQLLPRRPDLKIIITS 218 (1283)
T ss_pred cceEEeeEEcCCcccCCCceeeeccccHHHHHhhhCcccccCcEEEEcCcchhhccchhHHHHHHHHHhhCCCCeEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCHHHHHHHhCCCCeEeecCcccceeeeecCCCc------hhHHHHHHHHHHHHhhcCCCCCEEEEcCCHHHHHHHHH
Q 001722 475 ATLNAQKFSDFFGSVPIFHIPGRTFPVNTLYSKTPC------EDYVEAAVKQAMTIHITSPPGDILIFMTGQDEIEAACF 548 (1020)
Q Consensus 475 ATld~~~f~~~f~~~pvi~i~gr~~pV~i~y~~~~~------~dyl~~av~~~l~i~~~~~~g~ILVFl~g~~eie~l~~ 548 (1020)
||+|.+.|++||+++|++.++|+.|||+++|..... .++++..+..+..++ ...+|+|||||||+.+|+.+++
T Consensus 219 ATld~~~fa~~F~~apvI~V~Gr~~PVev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~-~~~~GdILVFLpg~~EI~~l~~ 297 (1283)
T TIGR01967 219 ATIDPERFSRHFNNAPIIEVSGRTYPVEVRYRPLVEEQEDDDLDQLEAILDAVDELF-AEGPGDILIFLPGEREIRDAAE 297 (1283)
T ss_pred CCcCHHHHHHHhcCCCEEEECCCcccceeEEecccccccchhhhHHHHHHHHHHHHH-hhCCCCEEEeCCCHHHHHHHHH
Confidence 999999999999999999999999999999976432 235554444443333 3457999999999999999999
Q ss_pred HHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHHHhcCCCeEEEEecchhhccCCCCCeeEEEEcCCccceeccC
Q 001722 549 ALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAETSLTVDGIFYVIDTGYGKMKVYNP 628 (1020)
Q Consensus 549 ~L~e~l~~l~~~~~~~~~~l~vl~lhs~L~~~eq~~I~~~f~~g~rkVIVATniaEtGItIp~V~~VID~G~~K~~~yd~ 628 (1020)
.|.+. ..+++.|+++||+|+.++|.++|..+ +.++|||||||||+|||||+|+||||+|+.|.+.||+
T Consensus 298 ~L~~~----------~~~~~~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIpgV~yVIDsGl~r~~~yd~ 365 (1283)
T TIGR01967 298 ILRKR----------NLRHTEILPLYARLSNKEQQRVFQPH--SGRRIVLATNVAETSLTVPGIHYVIDTGTARISRYSY 365 (1283)
T ss_pred HHHhc----------CCCCcEEEeccCCCCHHHHHHHhCCC--CCceEEEeccHHHhccccCCeeEEEeCCCcccccccc
Confidence 88753 23467899999999999999999865 3589999999999999999999999999999999999
Q ss_pred CCCcccccccccCHHHHHHHhcccCCCCCCEEEEccChhhHhhccCCCCcchhcccchhHHHHHHhhcccCcccCCCCCC
Q 001722 629 KMGMDALQVFPVSRAAADQRAGRAGRTGPGTCYRLYTESAYLNEMLPSPVPEIQRTNLGNVVLLLKSLKIDNLLDFDFMD 708 (1020)
Q Consensus 629 ~~g~~~L~~~piS~as~~QRaGRAGR~g~G~cyrLyt~~~~~~~m~~~~~PEI~r~~L~~vvL~lk~lgi~~~~~f~~~d 708 (1020)
.+|++.|.+.|+|+++|.||+|||||+++|+||+||++++|. .+.+++.|||+|++|..++|+++++|+.++..|+|+|
T Consensus 366 ~~~~~~L~~~~ISkasa~QRaGRAGR~~~G~cyRLyte~~~~-~~~~~~~PEIlR~~L~~viL~l~~lg~~di~~f~fld 444 (1283)
T TIGR01967 366 RTKVQRLPIEPISQASANQRKGRCGRVAPGICIRLYSEEDFN-SRPEFTDPEILRTNLASVILQMLALRLGDIAAFPFIE 444 (1283)
T ss_pred ccCccccCCccCCHHHHHHHhhhhCCCCCceEEEecCHHHHH-hhhhccCcccccccHHHHHHHHHhcCCCCcccccCCC
Confidence 999999999999999999999999999999999999999994 5889999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHhcCccCCC---CccHHHHHhhcCCCChHHHHHHhhhhccCcHHHHHHHHHHhCCCCcccCCcch
Q 001722 709 PPPQENILNSMYQLWVLGALNNVG---ALTDLGWKMVEFPLDPPLAKMLLMGEQLGCLDEVLTIVSMLSVPSVFFRPKDR 785 (1020)
Q Consensus 709 pP~~~~i~~al~~L~~lgaLd~~g---~LT~lG~~ma~lPldp~lak~ll~~~~~~c~~e~l~I~a~ls~~~~f~~p~~~ 785 (1020)
||+..+|..|++.|+.+||||++| +||++|+.|+.||++|++||||+.|..+||++++++||||||++++|.+|.++
T Consensus 445 pP~~~~i~~A~~~L~~LGAld~~~~~~~LT~lGr~ma~LPldPrlarmLl~a~~~gcl~e~l~IaA~Ls~~dp~~~p~~~ 524 (1283)
T TIGR01967 445 APDPRAIRDGFRLLEELGALDDDEAEPQLTPIGRQLAQLPVDPRLARMLLEAHRLGCLQEVLIIASALSIQDPRERPMEK 524 (1283)
T ss_pred CCCHHHHHHHHHHHHHCCCCCCCCCCccccHHHHHHhhcCCChHHHHHHHHhhhcCCHHHHHHHHHHHcCCCcCCCcchh
Confidence 999999999999999999999998 79999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhccCCCcHHHHHHHHHHHHhhh------hhhhhhHhhccChHHHHHHHHHHHHHHHHHHhcCCCCCCCCC
Q 001722 786 AEESDAAREKFFVQESDHLTLLYVYQQWKEHQ------YRGDWCEEHYLHVKSLRKAREVRSQLLDILKTLKIPLTSSGH 859 (1020)
Q Consensus 786 ~~~~~~~r~~f~~~~sDhltll~vy~~w~~~~------~~~~wc~~~~l~~~~l~~a~~ir~qL~~~l~~~~~~~~s~~~ 859 (1020)
.++++.++.+|..++|||+++||+|+.|.... ....||.+||||+.+|+++.+++.||..++++++++..++..
T Consensus 525 ~~~a~~~~~~f~~~~sD~l~~L~~~~~~~~~~~~~~~~~~~~~C~~~fL~~~~l~~~~~i~~QL~~~~~~~~~~~~~~~~ 604 (1283)
T TIGR01967 525 QQAADQAHARFKDPRSDFLSRVNLWRHIEEQRQALSANQFRNACRKQYLNYLRVREWQDIYRQLTQVVKELGLKLNEEPA 604 (1283)
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhccchHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHcCCCcCCCCc
Confidence 99999999999999999999999999997542 235899999999999999999999999999999988877777
Q ss_pred ChHHHHHHHHhhccchhhhhcCCceeEEecCCcceeeCCCCcccCCCCCCCceeeeeeecchhhhhhhccccCHHHHHhh
Q 001722 860 DFDVVRKAICSAYFHNAARLKGVGEYINCRNGMPCHLHPSSAIYGLGYTPEYVVYHELILTTKEYMQCATAVEPQWLSEL 939 (1020)
Q Consensus 860 ~~~~i~~~l~~g~~~nvA~~~~~g~y~~~~~~~~v~lHPsS~l~~~~~~p~~vvy~el~~t~k~y~r~vt~i~~~wL~e~ 939 (1020)
+++.|++|||+|||+|||++++.|.|.+. +|..++|||+|+|++ .+|+||||+|++.|++.||++|++|+|+||.++
T Consensus 605 ~~~~i~~~l~~g~~~~iA~~~~~~~y~~~-~g~~~~ihP~S~L~~--~~p~wvv~~elv~t~~~~ir~~a~I~p~wl~~~ 681 (1283)
T TIGR01967 605 DYDAIHKALLSGLLSQIGMKDEKHEYDGA-RGRKFHIFPGSPLFK--KPPKWVMAAELVETSKLYARLVAKIEPEWVEPV 681 (1283)
T ss_pred cHHHHHHHHHHhhHHHHheeCCCCcEEec-CCcEEEECCCccccC--CCCCEEEEeeecccchheEeeeccCCHHHHHHH
Confidence 88889999999999999998777789865 578899999999987 469999999999999999999999999999999
Q ss_pred CCcceeec
Q 001722 940 GPMFFSVK 947 (1020)
Q Consensus 940 ~p~~~~~~ 947 (1020)
+|++|+..
T Consensus 682 ~~~~~~~~ 689 (1283)
T TIGR01967 682 AGHLIKKN 689 (1283)
T ss_pred hHHHhEec
Confidence 99998766
No 8
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.6e-118 Score=1021.54 Aligned_cols=633 Identities=40% Similarity=0.682 Sum_probs=571.5
Q ss_pred hhhhHHHHHHHcCCCcHHHHHHHHHHHHhCCeEEEEecCCCchHHHHHHHHHHhcccC-----CCEEEEEcccHHHHHHH
Q 001722 309 FAKSKTLAEQRQYLPIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTT-----NGIVGCTQPRRVAAMSV 383 (1020)
Q Consensus 309 ~~~~~~l~~~R~~LPi~~~q~eil~~i~~~q~vII~gpTGSGKTtqi~q~Lle~~~~~-----~~~Il~tqPrR~lA~qv 383 (1020)
..+..++++.|..|||+.-.++|+++|..|.+|||||+||||||||+||||++++|.. +|.|++|||||++|+++
T Consensus 242 V~R~~EIQ~sR~~LPI~aeEq~IMEaIn~n~vvIIcGeTGsGKTTQvPQFLYEAGf~s~~~~~~gmIGITqPRRVAaiam 321 (1172)
T KOG0926|consen 242 VSRPAEIQESRLDLPIVAEEQRIMEAINENPVVIICGETGSGKTTQVPQFLYEAGFASEQSSSPGMIGITQPRRVAAIAM 321 (1172)
T ss_pred ecCcHHHHHHHhcCchhHHHHHHHHHhhcCCeEEEecCCCCCccccchHHHHHcccCCccCCCCCeeeecCchHHHHHHH
Confidence 3456899999999999999999999999999999999999999999999999999875 46999999999999999
Q ss_pred HHHHHHHhccccCCEEEEEEeeeecCCCCccEEEEchHHHHHHHhcCCCCCCccEEEEeCCCcCCCCccHHHHHHHHHHh
Q 001722 384 AKRVSEEMDTELGDKVGYAIRFEDVTGPSTLIKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVA 463 (1020)
Q Consensus 384 a~rva~e~~~~lG~~VGy~ir~e~~~s~~t~I~~~T~g~LLr~ll~d~~L~~~s~IIIDEaHERs~~tD~ll~lLk~il~ 463 (1020)
|+||+.|++. +|..|||+|||+...++.|.|+|||+|+||+++.+|..|.+|++|||||||||+++||+|+|+|.+++.
T Consensus 322 AkRVa~EL~~-~~~eVsYqIRfd~ti~e~T~IkFMTDGVLLrEi~~DflL~kYSvIIlDEAHERSvnTDILiGmLSRiV~ 400 (1172)
T KOG0926|consen 322 AKRVAFELGV-LGSEVSYQIRFDGTIGEDTSIKFMTDGVLLREIENDFLLTKYSVIILDEAHERSVNTDILIGMLSRIVP 400 (1172)
T ss_pred HHHHHHHhcc-CccceeEEEEeccccCCCceeEEecchHHHHHHHHhHhhhhceeEEechhhhccchHHHHHHHHHHHHH
Confidence 9999999998 899999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred hc----------CCceEEEEeccCCHHHHHH---HhCC-CCeEeecCcccceeeeecCCCchhHHHHHHHHHHHHhhcCC
Q 001722 464 RR----------RDFKLIVTSATLNAQKFSD---FFGS-VPIFHIPGRTFPVNTLYSKTPCEDYVEAAVKQAMTIHITSP 529 (1020)
Q Consensus 464 ~r----------~~lklIlmSATld~~~f~~---~f~~-~pvi~i~gr~~pV~i~y~~~~~~dyl~~av~~~l~i~~~~~ 529 (1020)
.| ..+|+|+||||+-+..|.+ .|.. .|++.++.|.|||.+||.+....||+..+.+..+.||...|
T Consensus 401 LR~k~~ke~~~~kpLKLIIMSATLRVsDFtenk~LFpi~pPlikVdARQfPVsIHF~krT~~DYi~eAfrKtc~IH~kLP 480 (1172)
T KOG0926|consen 401 LRQKYYKEQCQIKPLKLIIMSATLRVSDFTENKRLFPIPPPLIKVDARQFPVSIHFNKRTPDDYIAEAFRKTCKIHKKLP 480 (1172)
T ss_pred HHHHHhhhhcccCceeEEEEeeeEEecccccCceecCCCCceeeeecccCceEEEeccCCCchHHHHHHHHHHHHhhcCC
Confidence 54 2689999999998888873 5554 67999999999999999998888999999999999999999
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHHHHHHh------------------------------------------------hcc-
Q 001722 530 PGDILIFMTGQDEIEAACFALKERMEQL------------------------------------------------ISS- 560 (1020)
Q Consensus 530 ~g~ILVFl~g~~eie~l~~~L~e~l~~l------------------------------------------------~~~- 560 (1020)
+|.||||++|+.+++.+|..|++++... .++
T Consensus 481 ~G~ILVFvTGQqEV~qL~~kLRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k~~dfe~Ed~~~~~ed~d~~~~~~~ 560 (1172)
T KOG0926|consen 481 PGGILVFVTGQQEVDQLCEKLRKRFPESFGGVKMKKNVKAFKELKENPSDIGDSNKTDDFEEEDMYESDEDIDQELVDSG 560 (1172)
T ss_pred CCcEEEEEeChHHHHHHHHHHHhhCccccccchhhhhhhhccccccchhhhccCcccccchhcccccchhhhhhhhhccc
Confidence 9999999999999999999998873210 000
Q ss_pred -------------------------------------ccCCCCCeEEEEecCCCCHHHHHHHHHHhcCCCeEEEEecchh
Q 001722 561 -------------------------------------TTREVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIA 603 (1020)
Q Consensus 561 -------------------------------------~~~~~~~l~vl~lhs~L~~~eq~~I~~~f~~g~rkVIVATnia 603 (1020)
......++.|+||||-|+.+.|.+||+..+.|.|-||||||+|
T Consensus 561 ~~~~raa~~~~~De~~~~nge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNVA 640 (1172)
T KOG0926|consen 561 FASLRAAFNALADENGSVNGEPEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLLSTEKQMRVFDEVPKGERLCVVATNVA 640 (1172)
T ss_pred chhhhhhhhccccccccccCCcccchhhhchhhhhccCCCCCCceEEeehhhhcCHHHhhhhccCCCCCceEEEEeccch
Confidence 0011236789999999999999999999999999999999999
Q ss_pred hccCCCCCeeEEEEcCCccceeccCCCCcccccccccCHHHHHHHhcccCCCCCCEEEEccChhhHhhccCCCCcchhcc
Q 001722 604 ETSLTVDGIFYVIDTGYGKMKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTGPGTCYRLYTESAYLNEMLPSPVPEIQR 683 (1020)
Q Consensus 604 EtGItIp~V~~VID~G~~K~~~yd~~~g~~~L~~~piS~as~~QRaGRAGR~g~G~cyrLyt~~~~~~~m~~~~~PEI~r 683 (1020)
|||||||+|+||||||++|.+.||..+|++++.+.|+|+|++.||+|||||+|||+|||||+...|.+.+..+..|||++
T Consensus 641 ETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtgpGHcYRLYSSAVf~~~Fe~fS~PEIlk 720 (1172)
T KOG0926|consen 641 ETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTGPGHCYRLYSSAVFSNDFEEFSLPEILK 720 (1172)
T ss_pred hcccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCCCCceeehhhhHHhhcchhhhccHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999998999999999999
Q ss_pred cchhHHHHHHhhcccCcccCCCCCCCCChhhHHHHHHHHHHhcCccCCCCccHHHHHhhcCCCChHHHHHHhhhhccCcH
Q 001722 684 TNLGNVVLLLKSLKIDNLLDFDFMDPPPQENILNSMYQLWVLGALNNVGALTDLGWKMVEFPLDPPLAKMLLMGEQLGCL 763 (1020)
Q Consensus 684 ~~L~~vvL~lk~lgi~~~~~f~~~dpP~~~~i~~al~~L~~lgaLd~~g~LT~lG~~ma~lPldp~lak~ll~~~~~~c~ 763 (1020)
.+.++++|+||+|+|+++.+|||++||...++..|...|..|||||++|.||+||+.|+.|||.|++||||+.+.+.+|+
T Consensus 721 ~Pve~lvLqMKsMnI~kVvnFPFPtpPd~~~L~~Aer~L~~LgALd~~g~lT~lGk~mS~FPlsPrfsKmL~~~~Q~~~l 800 (1172)
T KOG0926|consen 721 KPVESLVLQMKSMNIDKVVNFPFPTPPDRSALEKAERRLKALGALDSNGGLTKLGKAMSLFPLSPRFSKMLATSDQHNLL 800 (1172)
T ss_pred CcHHHHHHHHHhcCccceecCCCCCCccHHHHHHHHHHHHHhccccccCCcccccchhcccccChhHHHHHHHHHhhcch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCcccCCc--------------c------------------hHHHHHHHHhhhccCCCcHHHHHHHHH
Q 001722 764 DEVLTIVSMLSVPSVFFRPK--------------D------------------RAEESDAAREKFFVQESDHLTLLYVYQ 811 (1020)
Q Consensus 764 ~e~l~I~a~ls~~~~f~~p~--------------~------------------~~~~~~~~r~~f~~~~sDhltll~vy~ 811 (1020)
.-++.+||+||+..+|+.-. + ++....+++.+|....||-|+||.+..
T Consensus 801 py~i~lvsaLsv~e~~i~~~~ll~n~~~r~~~~eE~d~~~~de~~~d~~~K~~rr~~~~aa~~rf~~l~sd~l~Ll~Av~ 880 (1172)
T KOG0926|consen 801 PYNIALVSALSVYEVLIVAASLLPNPLIREFEPEEKDLIKDDETVEDKELKKRRREKSKAARSRFSNLDSDALVLLSAVS 880 (1172)
T ss_pred hHHHHHHHHHhccchhhhhhhcccccccccCCcchhhccccccccccHHHHHHHHHHHHHHHhhhccCCccHHHHHHHHH
Confidence 99999999999988875311 1 111233456667778899999999999
Q ss_pred HHHhhhhhhhhhHhhccChHHHHHHHHHHHHHHHHHHhcCC-------CCCCCC-C--ChHHHHHHHHhhccchhhhhcC
Q 001722 812 QWKEHQYRGDWCEEHYLHVKSLRKAREVRSQLLDILKTLKI-------PLTSSG-H--DFDVVRKAICSAYFHNAARLKG 881 (1020)
Q Consensus 812 ~w~~~~~~~~wc~~~~l~~~~l~~a~~ir~qL~~~l~~~~~-------~~~s~~-~--~~~~i~~~l~~g~~~nvA~~~~ 881 (1020)
++....+...||..|||..++|.+++++|.||..++...++ .+.... + ....+|..||+||.++||+.-.
T Consensus 881 a~ey~~~~~rfc~~ngLr~Kam~Ev~KLR~QL~~lv~~~~i~~v~~~~d~~l~ppt~~q~~lLrQ~i~Ag~~DrVArk~~ 960 (1172)
T KOG0926|consen 881 AAEYAENGMRFCEANGLRLKAMEEVRKLRKQLTNLVNHGNIQDVEKSWDLTLKPPTDTQAKLLRQMICAGFADRVARKVD 960 (1172)
T ss_pred HHHhhhhcchhHHhcchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcccCCCCCchHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99888777789999999999999999999999999875433 111111 1 2346899999999999999766
Q ss_pred CceeEEecCCcceeeCCCCcccCCCCCCCceeeeeeecchhhhhh-hccccCHHHHHhhCCcce
Q 001722 882 VGEYINCRNGMPCHLHPSSAIYGLGYTPEYVVYHELILTTKEYMQ-CATAVEPQWLSELGPMFF 944 (1020)
Q Consensus 882 ~g~y~~~~~~~~v~lHPsS~l~~~~~~p~~vvy~el~~t~k~y~r-~vt~i~~~wL~e~~p~~~ 944 (1020)
.-.|-.+.-+.+|+|||+|+|++ ..|+||+|.|++.|...||. +||+|+|+||..+++.+.
T Consensus 961 ~~~y~~~~i~~~~fl~~~svl~~--~ape~viY~el~~~~~~~~~~~v~~v~pewl~~~~~slc 1022 (1172)
T KOG0926|consen 961 ATEYDAAKIQEPVFLHRWSVLIN--SAPELVIYQELLLTNRPYMHGGVTAVRPEWLLNHAKSLC 1022 (1172)
T ss_pred ccccchhhhcCceeeeehhhhhc--cCccceehhhhhhcCCcccccceEEEchHHHHhhhhhhc
Confidence 66688777788999999999997 57999999999999887765 699999999999877443
No 9
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=100.00 E-value=3.4e-113 Score=1032.60 Aligned_cols=635 Identities=37% Similarity=0.603 Sum_probs=567.7
Q ss_pred hhhhHHHHHHHcCCCcHHHHHHHHHHHHhCCeEEEEecCCCchHHHHHHHHHHhcccC--CCEEEEEcccHHHHHHHHHH
Q 001722 309 FAKSKTLAEQRQYLPIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTT--NGIVGCTQPRRVAAMSVAKR 386 (1020)
Q Consensus 309 ~~~~~~l~~~R~~LPi~~~q~eil~~i~~~q~vII~gpTGSGKTtqi~q~Lle~~~~~--~~~Il~tqPrR~lA~qva~r 386 (1020)
..+++.++..|..||+|+++++||++|.++++++|+|+||||||||+|||+++..+.. ..+|+||||||++|+++|+|
T Consensus 159 s~~~~~~~~~R~~LPa~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~~~~~IicTQPRRIsAIsvAeR 238 (924)
T KOG0920|consen 159 SESYKEMLRFRESLPAYKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIESGAACNIICTQPRRISAISVAER 238 (924)
T ss_pred hhHHHHHHHHHHhCccHHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhcCCCCeEEecCCchHHHHHHHHH
Confidence 3457899999999999999999999999999999999999999999999999986543 35899999999999999999
Q ss_pred HHHHhccccCCEEEEEEeeeecCCCCccEEEEchHHHHHHHhcCCCCCCccEEEEeCCCcCCCCccHHHHHHHHHHhhcC
Q 001722 387 VSEEMDTELGDKVGYAIRFEDVTGPSTLIKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRR 466 (1020)
Q Consensus 387 va~e~~~~lG~~VGy~ir~e~~~s~~t~I~~~T~g~LLr~ll~d~~L~~~s~IIIDEaHERs~~tD~ll~lLk~il~~r~ 466 (1020)
|+.|++..+|..|||+||.+...+..|.+.|||+|+|||.+..++.+.+++|||+||+|||++++|+++.++|.++.++|
T Consensus 239 Va~ER~~~~g~~VGYqvrl~~~~s~~t~L~fcTtGvLLr~L~~~~~l~~vthiivDEVHER~i~~DflLi~lk~lL~~~p 318 (924)
T KOG0920|consen 239 VAKERGESLGEEVGYQVRLESKRSRETRLLFCTTGVLLRRLQSDPTLSGVTHIIVDEVHERSINTDFLLILLKDLLPRNP 318 (924)
T ss_pred HHHHhccccCCeeeEEEeeecccCCceeEEEecHHHHHHHhccCcccccCceeeeeeEEEccCCcccHHHHHHHHhhhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEeccCCHHHHHHHhCCCCeEeecCcccceeeeecCCC-----------------chh--------------HHH
Q 001722 467 DFKLIVTSATLNAQKFSDFFGSVPIFHIPGRTFPVNTLYSKTP-----------------CED--------------YVE 515 (1020)
Q Consensus 467 ~lklIlmSATld~~~f~~~f~~~pvi~i~gr~~pV~i~y~~~~-----------------~~d--------------yl~ 515 (1020)
++|+|+||||+|++.|++||++||+++|+|++|||..+|+..- ..+ -.+
T Consensus 319 ~LkvILMSAT~dae~fs~YF~~~pvi~i~grtfpV~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~ 398 (924)
T KOG0920|consen 319 DLKVILMSATLDAELFSDYFGGCPVITIPGRTFPVKEYFLEDILSKTGYVSEDDSARSGPERSQLRLARLKLWEPEIDYD 398 (924)
T ss_pred CceEEEeeeecchHHHHHHhCCCceEeecCCCcchHHHHHHHHHHHhcccccccccccccccCccccccchhccccccHH
Confidence 9999999999999999999999999999999999999885411 000 011
Q ss_pred HHHHHHHHHhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHHHhcCCCeE
Q 001722 516 AAVKQAMTIHITSPPGDILIFMTGQDEIEAACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTRK 595 (1020)
Q Consensus 516 ~av~~~l~i~~~~~~g~ILVFl~g~~eie~l~~~L~e~l~~l~~~~~~~~~~l~vl~lhs~L~~~eq~~I~~~f~~g~rk 595 (1020)
.....+..|+.....|.||||+||..+|..+...|.... ...+...+.++|+||.|+.++|+.||...+.|.+|
T Consensus 399 Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~------~f~~~~~~~ilplHs~~~s~eQ~~VF~~pp~g~RK 472 (924)
T KOG0920|consen 399 LIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNL------PFADSLKFAILPLHSSIPSEEQQAVFKRPPKGTRK 472 (924)
T ss_pred HHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhcc------ccccccceEEEeccccCChHHHHHhcCCCCCCcch
Confidence 122233345555668999999999999999998886421 11122468999999999999999999999999999
Q ss_pred EEEecchhhccCCCCCeeEEEEcCCccceeccCCCCcccccccccCHHHHHHHhcccCCCCCCEEEEccChhhHhhccCC
Q 001722 596 CIVATNIAETSLTVDGIFYVIDTGYGKMKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTGPGTCYRLYTESAYLNEMLP 675 (1020)
Q Consensus 596 VIVATniaEtGItIp~V~~VID~G~~K~~~yd~~~g~~~L~~~piS~as~~QRaGRAGR~g~G~cyrLyt~~~~~~~m~~ 675 (1020)
||+||||||+|||||+|.||||+|+.|++.|||..++++|...|+|++++.||+|||||+.+|.||+||++..|...+..
T Consensus 473 IIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv~~G~cy~L~~~~~~~~~~~~ 552 (924)
T KOG0920|consen 473 IILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRVRPGICYHLYTRSRYEKLMLA 552 (924)
T ss_pred hhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCccCCeeEEeechhhhhhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999777777
Q ss_pred CCcchhcccchhHHHHHHhhcccCcccCC--CCCCCCChhhHHHHHHHHHHhcCccCCCCccHHHHHhhcCCCChHHHHH
Q 001722 676 SPVPEIQRTNLGNVVLLLKSLKIDNLLDF--DFMDPPPQENILNSMYQLWVLGALNNVGALTDLGWKMVEFPLDPPLAKM 753 (1020)
Q Consensus 676 ~~~PEI~r~~L~~vvL~lk~lgi~~~~~f--~~~dpP~~~~i~~al~~L~~lgaLd~~g~LT~lG~~ma~lPldp~lak~ 753 (1020)
+++|||+|++|.++||++|.+++..+..| ..+|||+.+++..|+..|..+|||+.+.+||+||+.|+.||+||.+|||
T Consensus 553 ~q~PEilR~pL~~l~L~iK~l~~~~~~~fLskaldpP~~~~v~~a~~~L~~igaL~~~e~LT~LG~~la~lPvd~~igK~ 632 (924)
T KOG0920|consen 553 YQLPEILRTPLEELCLHIKVLEQGSIKAFLSKALDPPPADAVDLAIERLKQIGALDESEELTPLGLHLASLPVDVRIGKL 632 (924)
T ss_pred cCChHHHhChHHHhhheeeeccCCCHHHHHHHhcCCCChHHHHHHHHHHHHhccccCcccchHHHHHHHhCCCccccchh
Confidence 99999999999999999999998877765 5799999999999999999999999999999999999999999999999
Q ss_pred HhhhhccCcHHHHHHHHHHhCCCCcccCCcchHHHHHHHHhhhccC-CCcHHHHHHHHHHHHhhhh-----hhhhhHhhc
Q 001722 754 LLMGEQLGCLDEVLTIVSMLSVPSVFFRPKDRAEESDAAREKFFVQ-ESDHLTLLYVYQQWKEHQY-----RGDWCEEHY 827 (1020)
Q Consensus 754 ll~~~~~~c~~e~l~I~a~ls~~~~f~~p~~~~~~~~~~r~~f~~~-~sDhltll~vy~~w~~~~~-----~~~wc~~~~ 827 (1020)
|+.|+.|+|++++++|||+|+.++||+.|.++++.+++++..|... .||||+++++|+.|+.... ..+||.+||
T Consensus 633 ll~g~if~cLdp~l~iaa~Ls~k~PF~~~~~~~~~~~~~~~~~~~~~~SD~la~~~ay~~w~~~~~~~~~~~~~fc~~~f 712 (924)
T KOG0920|consen 633 LLFGAIFGCLDPALTIAAALSFKSPFVSPLGKREEADKAKKLLALDSISDHLAVVRAYAGWREILRSGPSAEKDFCEENF 712 (924)
T ss_pred heehhhccccchhhhHHHHhccCCCcccCCCchhHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999988755 5999999999999986533 469999999
Q ss_pred cChHHHHHHHHHHHHHHHHHHhcCCCCCC------------CCCChHHHHHHHHhhccchhhhhcC---Cc---eeEEec
Q 001722 828 LHVKSLRKAREVRSQLLDILKTLKIPLTS------------SGHDFDVVRKAICSAYFHNAARLKG---VG---EYINCR 889 (1020)
Q Consensus 828 l~~~~l~~a~~ir~qL~~~l~~~~~~~~s------------~~~~~~~i~~~l~~g~~~nvA~~~~---~g---~y~~~~ 889 (1020)
|+..+|+++..+|.|+.+.+..+++.-.+ +..++++++++||+|+|||+|+... .. .|.+-.
T Consensus 713 Ls~~~l~~i~~l~~q~~~~l~~~g~~~~~~~~~~~~~~~n~~s~~~~~iravl~a~lyP~i~~~~~~~~~~~~~~~~~~~ 792 (924)
T KOG0920|consen 713 LSSNTLQEISSLRVQFLELLSDIGLIPISSTAALTDSECNHNSQNPELVRAVLCAGLYPNIAFVRRMEPKSKSVTFVTKA 792 (924)
T ss_pred ccHHHHHHHHHHHHHHHHHhhhcccccCCcccccCchhhhhcCCCHHHHHHHHhccCCCceeeeecccCCcCcceeecCC
Confidence 99999999999999999999998863321 2357889999999999999998763 22 233322
Q ss_pred CCcceeeCCCCcccCC-CCCCCceeeeeeecchh-hhhhhccccCHHHHHhhCCcceeecCCc
Q 001722 890 NGMPCHLHPSSAIYGL-GYTPEYVVYHELILTTK-EYMQCATAVEPQWLSELGPMFFSVKDSD 950 (1020)
Q Consensus 890 ~~~~v~lHPsS~l~~~-~~~p~~vvy~el~~t~k-~y~r~vt~i~~~wL~e~~p~~~~~~~~~ 950 (1020)
+ ..+++||+|+.+.. .+..+|++|+|.+.|++ .|+|++|.|.+.-+..++...+.+...+
T Consensus 793 ~-~~v~i~~~sv~~~~~~~~~p~l~~~~k~~t~~~~~~rd~T~v~~~~~llfgg~~~~~~~~~ 854 (924)
T KOG0920|consen 793 D-GRVIIHPSSVNEQSTGFQSPFLVFPEKVKSTRLVSLRDTTSVSSSALLLFGGGISTVRMKS 854 (924)
T ss_pred c-eeEEEecchhhccccccCCcceEEeeecccCCcceeeecCCCCcHHheeecCCceeecCCC
Confidence 2 36999999999864 34456999999999999 9999999999999999988776554443
No 10
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=2.9e-95 Score=896.62 Aligned_cols=566 Identities=31% Similarity=0.483 Sum_probs=498.7
Q ss_pred CCCcHHHHHHHHHHHHhCCeEEEEecCCCchHHHHHHHHHHhcccCCCEEEEEcccHHHHHHHHHHHHHHhccccCCEEE
Q 001722 321 YLPIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELGDKVG 400 (1020)
Q Consensus 321 ~LPi~~~q~eil~~i~~~q~vII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~lA~qva~rva~e~~~~lG~~VG 400 (1020)
.|||+.+..+|++++.+++++||+|+|||||||++|+++++.... +++|+|++|||++|.|++.+++++++..+|..||
T Consensus 3 ~LPi~~~~~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~~-~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~VG 81 (812)
T PRK11664 3 SLPVAAVLPELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGGI-NGKIIMLEPRRLAARNVAQRLAEQLGEKPGETVG 81 (812)
T ss_pred CCCHHHHHHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCCc-CCeEEEECChHHHHHHHHHHHHHHhCcccCceEE
Confidence 599999999999999999999999999999999999999987654 4689999999999999999999999999999999
Q ss_pred EEEeeeecCCCCccEEEEchHHHHHHHhcCCCCCCccEEEEeCCCcCCCCccHHHHHHHHHHh-hcCCceEEEEeccCCH
Q 001722 401 YAIRFEDVTGPSTLIKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVA-RRRDFKLIVTSATLNA 479 (1020)
Q Consensus 401 y~ir~e~~~s~~t~I~~~T~g~LLr~ll~d~~L~~~s~IIIDEaHERs~~tD~ll~lLk~il~-~r~~lklIlmSATld~ 479 (1020)
|.+++++..+..++|+|+|+|+|++.+..++.|++|++|||||+|||++++|+++++++.++. .++++|+|+||||++.
T Consensus 82 y~vr~~~~~~~~t~I~v~T~G~Llr~l~~d~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~~lqlilmSATl~~ 161 (812)
T PRK11664 82 YRMRAESKVGPNTRLEVVTEGILTRMIQRDPELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDN 161 (812)
T ss_pred EEecCccccCCCCcEEEEChhHHHHHHhhCCCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCccceEEEEecCCCH
Confidence 999999999999999999999999999999999999999999999999999999999988876 4789999999999999
Q ss_pred HHHHHHhCCCCeEeecCcccceeeeecCCCchhHHHHHHHHHHHHhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHHHhhc
Q 001722 480 QKFSDFFGSVPIFHIPGRTFPVNTLYSKTPCEDYVEAAVKQAMTIHITSPPGDILIFMTGQDEIEAACFALKERMEQLIS 559 (1020)
Q Consensus 480 ~~f~~~f~~~pvi~i~gr~~pV~i~y~~~~~~dyl~~av~~~l~i~~~~~~g~ILVFl~g~~eie~l~~~L~e~l~~l~~ 559 (1020)
+.|++||++++++.++|+.|||+.+|...+..+++...+..++........|+|||||||+.+|+.+++.|.+.+
T Consensus 162 ~~l~~~~~~~~~I~~~gr~~pV~~~y~~~~~~~~~~~~v~~~l~~~l~~~~g~iLVFlpg~~ei~~l~~~L~~~~----- 236 (812)
T PRK11664 162 DRLQQLLPDAPVIVSEGRSFPVERRYQPLPAHQRFDEAVARATAELLRQESGSLLLFLPGVGEIQRVQEQLASRV----- 236 (812)
T ss_pred HHHHHhcCCCCEEEecCccccceEEeccCchhhhHHHHHHHHHHHHHHhCCCCEEEEcCCHHHHHHHHHHHHHhc-----
Confidence 999999999999999999999999999877777777666555555555567999999999999999999987532
Q ss_pred cccCCCCCeEEEEecCCCCHHHHHHHHHHhcCCCeEEEEecchhhccCCCCCeeEEEEcCCccceeccCCCCcccccccc
Q 001722 560 STTREVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAETSLTVDGIFYVIDTGYGKMKVYNPKMGMDALQVFP 639 (1020)
Q Consensus 560 ~~~~~~~~l~vl~lhs~L~~~eq~~I~~~f~~g~rkVIVATniaEtGItIp~V~~VID~G~~K~~~yd~~~g~~~L~~~p 639 (1020)
..++.++++||+|+.++|.+++..|++|.+||||||||||+|||||+|+||||+|+.|...||+.+|++.|.+.|
T Consensus 237 -----~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~ 311 (812)
T PRK11664 237 -----ASDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKTGLTRLVTQR 311 (812)
T ss_pred -----cCCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCcccccccccCCcceeEEEe
Confidence 136789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCHHHHHHHhcccCCCCCCEEEEccChhhHhhccCCCCcchhcccchhHHHHHHhhcccCcccCCCCCCCCChhhHHHHH
Q 001722 640 VSRAAADQRAGRAGRTGPGTCYRLYTESAYLNEMLPSPVPEIQRTNLGNVVLLLKSLKIDNLLDFDFMDPPPQENILNSM 719 (1020)
Q Consensus 640 iS~as~~QRaGRAGR~g~G~cyrLyt~~~~~~~m~~~~~PEI~r~~L~~vvL~lk~lgi~~~~~f~~~dpP~~~~i~~al 719 (1020)
||+++|.||+|||||+++|.||+||++..| ..|.+++.|||++++|++++|.++++|+.++..|+|+|||+..++..|+
T Consensus 312 iSkasa~QR~GRaGR~~~G~cyrL~t~~~~-~~l~~~~~PEI~r~dL~~~~L~l~~~g~~~~~~~~~ld~P~~~~~~~A~ 390 (812)
T PRK11664 312 ISQASMTQRAGRAGRLEPGICLHLYSKEQA-ERAAAQSEPEILHSDLSGLLLELLQWGCHDPAQLSWLDQPPAAALAAAK 390 (812)
T ss_pred echhhhhhhccccCCCCCcEEEEecCHHHH-hhCccCCCCceeccchHHHHHHHHHcCCCCHHhCCCCCCCCHHHHHHHH
Confidence 999999999999999999999999999999 4699999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCccCCCCccHHHHHhhcCCCChHHHHHHhhhhccCcHH--HHHHHHHHhCCCCcccCCcchHHHHHHHHhhhc
Q 001722 720 YQLWVLGALNNVGALTDLGWKMVEFPLDPPLAKMLLMGEQLGCLD--EVLTIVSMLSVPSVFFRPKDRAEESDAAREKFF 797 (1020)
Q Consensus 720 ~~L~~lgaLd~~g~LT~lG~~ma~lPldp~lak~ll~~~~~~c~~--e~l~I~a~ls~~~~f~~p~~~~~~~~~~r~~f~ 797 (1020)
+.|+.+||||++|+||++|+.|++||++|++|||||.|..+||.. .++.|+|+|+.++. ..
T Consensus 391 ~~L~~lgald~~g~lT~~G~~m~~lp~~Prla~~ll~a~~~~~~~l~~a~~laall~e~~~-----~~------------ 453 (812)
T PRK11664 391 RLLQQLGALDGQGRLTARGRKMAALGNDPRLAAMLVAAKEDDEAALATAAKLAAILEEPPR-----SG------------ 453 (812)
T ss_pred HHHHHCCCCCCCCCcCHHHHHHHhcCCchHHHHHHHHHHhcCchhhHHHHHHHHhhccCCC-----CC------------
Confidence 999999999999999999999999999999999999999998753 67777788776532 00
Q ss_pred cCCCcHHHHHHHHHHHHhhhhhhhhhHhhccChHHHHHHHHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHhhccchhh
Q 001722 798 VQESDHLTLLYVYQQWKEHQYRGDWCEEHYLHVKSLRKAREVRSQLLDILKTLKIPLTSSGHDFDVVRKAICSAYFHNAA 877 (1020)
Q Consensus 798 ~~~sDhltll~vy~~w~~~~~~~~wc~~~~l~~~~l~~a~~ir~qL~~~l~~~~~~~~s~~~~~~~i~~~l~~g~~~nvA 877 (1020)
.+|....+..+. ..|+ +.+..+.+|+.... + . .+++.+.+|||+||+++||
T Consensus 454 --~~d~~~~l~~~~--------~~~~----------~~~~~~~~~~~~~~---~-~-----~~~~~~~~~la~aypdriA 504 (812)
T PRK11664 454 --SSDLGVALSRKQ--------PHWQ----------QRAQQLLKRLNVRG---G-E-----ADSSLIAPLLALAFPDRIA 504 (812)
T ss_pred --cccHHHHHHHHH--------HHHH----------HHHHHHHHHHHhhc---c-c-----CChHHHHHHHHHHCHHHHh
Confidence 234333333221 1342 33455555553311 1 1 1445689999999999999
Q ss_pred hhcCCceeEEecCCcceeeCCCCcccCCCCCCCceeeeeeecch-h--hhhhhccccCHHHHHhhCCcceeecC
Q 001722 878 RLKGVGEYINCRNGMPCHLHPSSAIYGLGYTPEYVVYHELILTT-K--EYMQCATAVEPQWLSELGPMFFSVKD 948 (1020)
Q Consensus 878 ~~~~~g~y~~~~~~~~v~lHPsS~l~~~~~~p~~vvy~el~~t~-k--~y~r~vt~i~~~wL~e~~p~~~~~~~ 948 (1020)
++++.+.+..+.+|+.++|||+|.|++ .+|+|++|++.++ + ..|+.+++|+++||.+++|.+|..++
T Consensus 505 ~~r~~~~~~~l~~G~~a~l~~~~~l~~----~~~lv~a~~~~~~~~~~~ri~~a~~l~~~~l~~~~~~~~~~~~ 574 (812)
T PRK11664 505 RRRGQDGRYQLANGMGAMLDADDALSR----HEWLIAPLLLQGSASPDARILLALPLDIDELVQRCPQLVQQSD 574 (812)
T ss_pred hhcCCCCeEEeeCCCeEEECCCCcccC----CCeEEEEEhhccCccccceeeEeeccCHHHHHHHHHHhceeee
Confidence 987665556689999999999999986 5999999997664 3 35778999999999999999876554
No 11
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=2e-94 Score=887.44 Aligned_cols=573 Identities=31% Similarity=0.464 Sum_probs=501.1
Q ss_pred CCcHHHHHHHHHHHHhCCeEEEEecCCCchHHHHHHHHHHhcccCCCEEEEEcccHHHHHHHHHHHHHHhccccCCEEEE
Q 001722 322 LPIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELGDKVGY 401 (1020)
Q Consensus 322 LPi~~~q~eil~~i~~~q~vII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~lA~qva~rva~e~~~~lG~~VGy 401 (1020)
|||+.+..+|+++|.+|+++||+|+|||||||++|+++++... .+++|+|++|||++|.+++++++++++..+|..|||
T Consensus 1 LPi~~~~~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~-~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VGy 79 (819)
T TIGR01970 1 LPIHAVLPALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPG-IGGKIIMLEPRRLAARSAAQRLASQLGEAVGQTVGY 79 (819)
T ss_pred CCchHHHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhc-cCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEEE
Confidence 8999999999999999999999999999999999999998864 357999999999999999999999999999999999
Q ss_pred EEeeeecCCCCccEEEEchHHHHHHHhcCCCCCCccEEEEeCCCcCCCCccHHHHHHHHHHh-hcCCceEEEEeccCCHH
Q 001722 402 AIRFEDVTGPSTLIKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVA-RRRDFKLIVTSATLNAQ 480 (1020)
Q Consensus 402 ~ir~e~~~s~~t~I~~~T~g~LLr~ll~d~~L~~~s~IIIDEaHERs~~tD~ll~lLk~il~-~r~~lklIlmSATld~~ 480 (1020)
.+++++..+.+++|+|+|+|+|++++..++.|++|++|||||||||++++|+++++++.+.. .++++|+|+||||++.+
T Consensus 80 ~vr~~~~~s~~t~I~v~T~G~Llr~l~~d~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr~dlqlIlmSATl~~~ 159 (819)
T TIGR01970 80 RVRGENKVSRRTRLEVVTEGILTRMIQDDPELDGVGALIFDEFHERSLDADLGLALALDVQSSLREDLKILAMSATLDGE 159 (819)
T ss_pred EEccccccCCCCcEEEECCcHHHHHHhhCcccccCCEEEEeccchhhhccchHHHHHHHHHHhcCCCceEEEEeCCCCHH
Confidence 99999999889999999999999999999999999999999999999999999999988875 57899999999999999
Q ss_pred HHHHHhCCCCeEeecCcccceeeeecCCCchhHHHHHHHHHHHHhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHHHhhcc
Q 001722 481 KFSDFFGSVPIFHIPGRTFPVNTLYSKTPCEDYVEAAVKQAMTIHITSPPGDILIFMTGQDEIEAACFALKERMEQLISS 560 (1020)
Q Consensus 481 ~f~~~f~~~pvi~i~gr~~pV~i~y~~~~~~dyl~~av~~~l~i~~~~~~g~ILVFl~g~~eie~l~~~L~e~l~~l~~~ 560 (1020)
.|++||+++|++.++|+.|||+++|......+++...+...+..+.....|+|||||||+.+|+.+++.|.+.+
T Consensus 160 ~l~~~l~~~~vI~~~gr~~pVe~~y~~~~~~~~~~~~v~~~l~~~l~~~~g~iLVFlpg~~eI~~l~~~L~~~~------ 233 (819)
T TIGR01970 160 RLSSLLPDAPVVESEGRSFPVEIRYLPLRGDQRLEDAVSRAVEHALASETGSILVFLPGQAEIRRVQEQLAERL------ 233 (819)
T ss_pred HHHHHcCCCcEEEecCcceeeeeEEeecchhhhHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHhhc------
Confidence 99999999999999999999999998876666665555444444444557999999999999999999987542
Q ss_pred ccCCCCCeEEEEecCCCCHHHHHHHHHHhcCCCeEEEEecchhhccCCCCCeeEEEEcCCccceeccCCCCccccccccc
Q 001722 561 TTREVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAETSLTVDGIFYVIDTGYGKMKVYNPKMGMDALQVFPV 640 (1020)
Q Consensus 561 ~~~~~~~l~vl~lhs~L~~~eq~~I~~~f~~g~rkVIVATniaEtGItIp~V~~VID~G~~K~~~yd~~~g~~~L~~~pi 640 (1020)
..++.++++||+|+.++|.++|+.|++|.+||||||||||+|||||+|+||||+|+.|.+.||+.+|++.|.+.||
T Consensus 234 ----~~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~i 309 (819)
T TIGR01970 234 ----DSDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKTGITRLETVRI 309 (819)
T ss_pred ----CCCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCcccccccccccCCceeeEEEE
Confidence 1468899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHhcccCCCCCCEEEEccChhhHhhccCCCCcchhcccchhHHHHHHhhcccCcccCCCCCCCCChhhHHHHHH
Q 001722 641 SRAAADQRAGRAGRTGPGTCYRLYTESAYLNEMLPSPVPEIQRTNLGNVVLLLKSLKIDNLLDFDFMDPPPQENILNSMY 720 (1020)
Q Consensus 641 S~as~~QRaGRAGR~g~G~cyrLyt~~~~~~~m~~~~~PEI~r~~L~~vvL~lk~lgi~~~~~f~~~dpP~~~~i~~al~ 720 (1020)
|+++|.||+|||||.++|.||+||++++| ..|.+++.|||++++|+.++|+++++|+.++..|+|+|||+.+++..|+.
T Consensus 310 Skasa~QR~GRAGR~~~G~cyrL~t~~~~-~~l~~~~~PEI~r~~L~~~~L~l~~~g~~~~~~~~~l~~P~~~~i~~a~~ 388 (819)
T TIGR01970 310 SQASATQRAGRAGRLEPGVCYRLWSEEQH-QRLPAQDEPEILQADLSGLALELAQWGAKDPSDLRWLDAPPSVALAAARQ 388 (819)
T ss_pred CHHHHHhhhhhcCCCCCCEEEEeCCHHHH-HhhhcCCCcceeccCcHHHHHHHHHcCCCChhhCCCCCCcCHHHHHHHHH
Confidence 99999999999999999999999999998 56999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCccCCCCccHHHHHhhcCCCChHHHHHHhhhhccCcHHHHHHHHHHhCCCCcccCCcchHHHHHHHHhhhccCC
Q 001722 721 QLWVLGALNNVGALTDLGWKMVEFPLDPPLAKMLLMGEQLGCLDEVLTIVSMLSVPSVFFRPKDRAEESDAAREKFFVQE 800 (1020)
Q Consensus 721 ~L~~lgaLd~~g~LT~lG~~ma~lPldp~lak~ll~~~~~~c~~e~l~I~a~ls~~~~f~~p~~~~~~~~~~r~~f~~~~ 800 (1020)
.|..+||||++|+||++|+.|+.||++|++||||+.|..+||.+++++||||||+++++-. ..
T Consensus 389 ~L~~lgald~~~~lT~~G~~~~~lp~~p~l~~~ll~~~~~~~~~~~~~iaa~ls~~~~~~~-----------------~~ 451 (819)
T TIGR01970 389 LLQRLGALDAQGRLTAHGKAMAALGCHPRLAAMLLSAHSTGLAALACDLAALLEERGLPRQ-----------------GG 451 (819)
T ss_pred HHHHCCCCCCCCCcCHHHHHHHhcCCCHHHHHHHHHhhhcCCHHHHHHHHHHHcCCCCCCC-----------------Cc
Confidence 9999999999999999999999999999999999999999999999999999999986421 13
Q ss_pred CcHHHHHHHHHHHHhhhhhhhhhHhhccChHHHHHHHHHHHHHHHHHHhcCCC-CC-CCCCChHHHHHHHHhhccchhhh
Q 001722 801 SDHLTLLYVYQQWKEHQYRGDWCEEHYLHVKSLRKAREVRSQLLDILKTLKIP-LT-SSGHDFDVVRKAICSAYFHNAAR 878 (1020)
Q Consensus 801 sDhltll~vy~~w~~~~~~~~wc~~~~l~~~~l~~a~~ir~qL~~~l~~~~~~-~~-s~~~~~~~i~~~l~~g~~~nvA~ 878 (1020)
+|....+..+... ....| ..+.++.+|+...+ +.. .. ....+. .+..+++.||.++||+
T Consensus 452 ~d~~~~~~~~~~~-----~~~~~----------~~~~~~~~~~~~~~---~~~~~~~~~~~~~-~~g~lla~a~pdria~ 512 (819)
T TIGR01970 452 ADLMNRLHRLQQG-----RQGRG----------QRAQQLAKKLRRRL---RFSQADSGAIASH-ALGLLLALAFPDRIAK 512 (819)
T ss_pred ccHHHHHHHHhhc-----chhhH----------HHHHHHHHHHHHHh---CcCcCCCcccccc-hHhHHHhhhChHhhee
Confidence 6766666555321 11112 22344555554432 211 10 111111 2677899999999999
Q ss_pred hcCC-ceeEEecCCcceeeCCCCcccCCCCCCCceeeeeeecc---hhhhhhhccccCHHHHHhhCCcceeec
Q 001722 879 LKGV-GEYINCRNGMPCHLHPSSAIYGLGYTPEYVVYHELILT---TKEYMQCATAVEPQWLSELGPMFFSVK 947 (1020)
Q Consensus 879 ~~~~-g~y~~~~~~~~v~lHPsS~l~~~~~~p~~vvy~el~~t---~k~y~r~vt~i~~~wL~e~~p~~~~~~ 947 (1020)
.++. |.|. +.+|..+.|+|.|.|.+ .+|+|..|+..+ ....|+.+++|++.||.+++|+.+...
T Consensus 513 ~r~~~~~y~-l~~G~~~~l~~~~~l~~----~~~l~~a~~~~~~~~~~~~i~~a~~i~~~~~~~~~~~~~~~~ 580 (819)
T TIGR01970 513 RRGQPGRYQ-LANGRGAVLSAEDALAR----EPWLVAADLGEGQGKTAARILLAAPVDEALLRQVLPDLVVQV 580 (819)
T ss_pred ccCCCCeEE-CCCCCeeEeCCCCcccC----CCeEEEEEeeccCCccccceeeeccCCHHHHHHHhHHHceEE
Confidence 7765 4576 78999999999999986 599999999744 235788999999999999988765443
No 12
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=100.00 E-value=6.2e-66 Score=598.50 Aligned_cols=623 Identities=30% Similarity=0.511 Sum_probs=522.3
Q ss_pred hhHHHHHHHcCCCcHHHHHHHHHHHHhCCeEEEEecCCCchHHHHHHHHHHhcccCCC----EEEEEcccHHHHHHHHHH
Q 001722 311 KSKTLAEQRQYLPIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNG----IVGCTQPRRVAAMSVAKR 386 (1020)
Q Consensus 311 ~~~~l~~~R~~LPi~~~q~eil~~i~~~q~vII~gpTGSGKTtqi~q~Lle~~~~~~~----~Il~tqPrR~lA~qva~r 386 (1020)
....+.++|..||+..+..+|++++.+|.+++|-|+||||||||+.|+|+++...++. .+.++||||+.|++++++
T Consensus 366 e~~~~~a~re~lpva~~~~~i~q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~g~~~na~v~qprrisaisiaer 445 (1282)
T KOG0921|consen 366 ALDKITAQREELPVAQYRSEILQAVAENRVVIIKGETGCGKSTQVAQFLLESFLENSNGASFNAVVSQPRRISAISLAER 445 (1282)
T ss_pred chhhhhhhhhhCcHHHHHHHHHHHHhcCceeeEeecccccchhHHHHHHHHHHhhccccccccceeccccccchHHHHHH
Confidence 3567889999999999999999999999999999999999999999999999776542 577899999999999999
Q ss_pred HHHHhccccCCEEEEEEeeeecCC-CCccEEEEchHHHHHHHhcCCCCCCccEEEEeCCCcCCCCccHHHHHHHHHHhhc
Q 001722 387 VSEEMDTELGDKVGYAIRFEDVTG-PSTLIKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARR 465 (1020)
Q Consensus 387 va~e~~~~lG~~VGy~ir~e~~~s-~~t~I~~~T~g~LLr~ll~d~~L~~~s~IIIDEaHERs~~tD~ll~lLk~il~~r 465 (1020)
|+.+.+..+|..|||++||++.++ +...|.+||.|.|++.+-+ .+..++|+|+||+|||.+++|+++.+++.+....
T Consensus 446 va~er~e~~g~tvgy~vRf~Sa~prpyg~i~fctvgvllr~~e~--glrg~sh~i~deiherdv~~dfll~~lr~m~~ty 523 (1282)
T KOG0921|consen 446 VANERGEEVGETCGYNVRFDSATPRPYGSIMFCTVGVLLRMMEN--GLRGISHVIIDEIHERDVDTDFVLIVLREMISTY 523 (1282)
T ss_pred HHHhhHHhhcccccccccccccccccccceeeeccchhhhhhhh--cccccccccchhhhhhccchHHHHHHHHhhhccc
Confidence 999999999999999999999876 5678999999999998754 4889999999999999999999999999999999
Q ss_pred CCceEEEEeccCCHHHHHHHhCCCCeEeecCcccceeeeecCC-------------C-------------ch--------
Q 001722 466 RDFKLIVTSATLNAQKFSDFFGSVPIFHIPGRTFPVNTLYSKT-------------P-------------CE-------- 511 (1020)
Q Consensus 466 ~~lklIlmSATld~~~f~~~f~~~pvi~i~gr~~pV~i~y~~~-------------~-------------~~-------- 511 (1020)
+++++++||||+|.+.|..||..+|.+.+.|++|||..+|... + ..
T Consensus 524 ~dl~v~lmsatIdTd~f~~~f~~~p~~~~~grt~pvq~F~led~~~~~~~vp~~~~~~k~k~~~~~~~~~~ddK~~n~n~ 603 (1282)
T KOG0921|consen 524 RDLRVVLMSATIDTDLFTNFFSSIPDVTVHGRTFPVQSFFLEDIIQMTQFVPSEPSQKKRKKDDDEEDEEVDDKGRNMNI 603 (1282)
T ss_pred hhhhhhhhhcccchhhhhhhhccccceeeccccccHHHHHHHHhhhhhhccCCCcCccchhhcccccCchhhhccccccc
Confidence 9999999999999999999999999999999999998765321 0 00
Q ss_pred ---h-HHHH---------------HHHHHH--HHhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHHHhhccccCCCCCeEE
Q 001722 512 ---D-YVEA---------------AVKQAM--TIHITSPPGDILIFMTGQDEIEAACFALKERMEQLISSTTREVPELLI 570 (1020)
Q Consensus 512 ---d-yl~~---------------av~~~l--~i~~~~~~g~ILVFl~g~~eie~l~~~L~e~l~~l~~~~~~~~~~l~v 570 (1020)
+ |-+. -+...+ .|....-+|.||||+++..+|-.+|..|...-. ......+.+
T Consensus 604 ~~dd~~~~~~~~am~~~se~d~~f~l~Eal~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~~------fg~~~~y~i 677 (1282)
T KOG0921|consen 604 LCDPSYNESTRTAMSRLSEKDIPFGLIEALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQE------FGQANKYEI 677 (1282)
T ss_pred ccChhhcchhhhhhhcchhhcchhHHHHHHHhhhcccCCccceeeecCchHHhhhhhhhhhhhhh------hccchhccc
Confidence 0 0000 011111 122233468999999999999999998865421 234567889
Q ss_pred EEecCCCCHHHHHHHHHHhcCCCeEEEEecchhhccCCCCCeeEEEEcCCccceeccCCCCcccccccccCHHHHHHHhc
Q 001722 571 LPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAETSLTVDGIFYVIDTGYGKMKVYNPKMGMDALQVFPVSRAAADQRAG 650 (1020)
Q Consensus 571 l~lhs~L~~~eq~~I~~~f~~g~rkVIVATniaEtGItIp~V~~VID~G~~K~~~yd~~~g~~~L~~~piS~as~~QRaG 650 (1020)
+|+|+.++..+|.+||+..+.|..|+|++|||+++++||+++.||||.+..+.+.|-....|....+.|.|+.+..||.|
T Consensus 678 lp~Hsq~~~~eqrkvf~~~p~gv~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~g 757 (1282)
T KOG0921|consen 678 LPLHSQLTSQEQRKVFEPVPEGVTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKG 757 (1282)
T ss_pred ccchhhcccHhhhhccCcccccccccccccceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCEEEEccChhhHhhccCCCCcchhcccchhHHHHHHhhcccCcccCC--CCCCCCChhhHHHHHHHHHHhcCc
Q 001722 651 RAGRTGPGTCYRLYTESAYLNEMLPSPVPEIQRTNLGNVVLLLKSLKIDNLLDF--DFMDPPPQENILNSMYQLWVLGAL 728 (1020)
Q Consensus 651 RAGR~g~G~cyrLyt~~~~~~~m~~~~~PEI~r~~L~~vvL~lk~lgi~~~~~f--~~~dpP~~~~i~~al~~L~~lgaL 728 (1020)
|+||..||.||+|++...| +.+..+-.||+.+++|..+.|..|.+.+..+..| ..+.||+.+++..+-..|..++++
T Consensus 758 r~grvR~G~~f~lcs~arF-~~l~~~~t~em~r~plhemalTikll~l~SI~~fl~kal~~~p~dav~e~e~~l~~m~~l 836 (1282)
T KOG0921|consen 758 RAGRVRPGFCFHLCSRARF-EALEDHGTAEMFRTPLHEIALTIKLLRLGSIGEFLGKALQPPPYDAVIEAEAVLREMGAL 836 (1282)
T ss_pred cCceecccccccccHHHHH-HHHHhcCcHhhhcCccHHHHhhHHHHHhhhHHHHHhhccCCCchhhccCchHHHHHhhhh
Confidence 9999999999999999999 5688899999999999999998887765554444 568999999999999999999999
Q ss_pred cCCCCccHHHHHhhcCCCChHHHHHHhhhhccCcHHHHHHHHHHhCCCCcccCCcchHHHHHHHHhhhcc-CCC-----c
Q 001722 729 NNVGALTDLGWKMVEFPLDPPLAKMLLMGEQLGCLDEVLTIVSMLSVPSVFFRPKDRAEESDAAREKFFV-QES-----D 802 (1020)
Q Consensus 729 d~~g~LT~lG~~ma~lPldp~lak~ll~~~~~~c~~e~l~I~a~ls~~~~f~~p~~~~~~~~~~r~~f~~-~~s-----D 802 (1020)
|.++.||++|+.++.+|++|.++||++.+.-++|..-|+..|+.++.+.+|+.-........-.+.+|.+ ..| |
T Consensus 837 d~n~elt~lg~~la~l~iep~~~k~~~lg~~~g~~~~m~~~as~~s~~~~~~~~~~~~~rl~g~q~~~~g~kfsdhva~~ 916 (1282)
T KOG0921|consen 837 DANDELTPLGRMLARLPIEPRIGKMMILGTALGAGSVMCDVASAMSFPTPFVPREKHHSRLSGTQRKFAGNKFSDHVAIV 916 (1282)
T ss_pred hccCcccchhhhhhhccCcccccceeeechhhccchhhhhhhcccccccccccccccccccccchhhccccccccchhhh
Confidence 9999999999999999999999999999999999999999999999988876421111111122334443 234 4
Q ss_pred HHHHHHHHHHHHhhhhhhhhhHhhccChHHHHHHHHHHHHHHHHHHhcCCCC--------CCCC--CChHHHHHHHHhhc
Q 001722 803 HLTLLYVYQQWKEHQYRGDWCEEHYLHVKSLRKAREVRSQLLDILKTLKIPL--------TSSG--HDFDVVRKAICSAY 872 (1020)
Q Consensus 803 hltll~vy~~w~~~~~~~~wc~~~~l~~~~l~~a~~ir~qL~~~l~~~~~~~--------~s~~--~~~~~i~~~l~~g~ 872 (1020)
|.+++.+++.|.......+||...+++...|......+.||++.|++..+|- .-++ .+.+.++..||.+.
T Consensus 917 ~v~q~~r~~~q~ga~~e~efc~r~~l~~~~~~~t~~a~~ql~d~L~q~~fpe~~~~~~~v~~ng~d~~l~~~~~lL~~~l 996 (1282)
T KOG0921|consen 917 SVIQGYREAVQMGAAAEREFCERYSLSNPVLKMTDGARRQLIDVLRQCSFPEDILFDISVNVNGPDRELNLMRSLLVMAL 996 (1282)
T ss_pred hhhhhhHHHhhhhhhhhhhHhHhhhhcchhhhhhhhhHHHHHHHHHhccCccccccceeeccCCCCchhHHHHHHHHhhc
Confidence 5555555666655555679999999999999999999999999999876542 1112 24567888999999
Q ss_pred cchhhhhcCCceeEEecCCcceeeCCCCccc--C---CCCCCCceeeeeeecchhhhhhhccccCHHHHHhhCCcc
Q 001722 873 FHNAARLKGVGEYINCRNGMPCHLHPSSAIY--G---LGYTPEYVVYHELILTTKEYMQCATAVEPQWLSELGPMF 943 (1020)
Q Consensus 873 ~~nvA~~~~~g~y~~~~~~~~v~lHPsS~l~--~---~~~~p~~vvy~el~~t~k~y~r~vt~i~~~wL~e~~p~~ 943 (1020)
|+|+|...+..+-++ .++....||-+|++- . +.++++|+||.|.+.|.-.=.+..|.|.|--|+-+|..-
T Consensus 997 ypn~~~y~ekrkvLt-Te~~~alihk~Svncp~S~qdM~fPsPFFVFGEKIRTRAIS~K~MslVsPLQLLLF~SrK 1071 (1282)
T KOG0921|consen 997 YPNVAYYVEKRKVLT-TEQSSALIHKYSVNCPNSRQEMDFPSPFFVFGEKIRTRAISCKQMSLVSPLQLLLFGSRK 1071 (1282)
T ss_pred CCccceeccceeEEe-ecchhhhhhhhcccCCCcccccCCCCceeeechhhhhheecccCccccChHHHhhhhhhh
Confidence 999998776655554 355556777777664 2 357889999999999988778888999999999887654
No 13
>PHA02653 RNA helicase NPH-II; Provisional
Probab=100.00 E-value=1.7e-59 Score=566.53 Aligned_cols=394 Identities=22% Similarity=0.328 Sum_probs=317.2
Q ss_pred HHHHHHHHHHHhCCeEEEEecCCCchHHHHHHHHHHh-----ccc---------CCCEEEEEcccHHHHHHHHHHHHHHh
Q 001722 326 SVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLED-----GYT---------TNGIVGCTQPRRVAAMSVAKRVSEEM 391 (1020)
Q Consensus 326 ~~q~eil~~i~~~q~vII~gpTGSGKTtqi~q~Lle~-----~~~---------~~~~Il~tqPrR~lA~qva~rva~e~ 391 (1020)
.+|+++++.+.+++++|++|+||||||+|+||+|++. ++. ..++|+|++|||+||.|++.++.+..
T Consensus 167 ~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~PrreLa~qi~~~i~~~v 246 (675)
T PHA02653 167 DVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRVALVRLHSITLLKSL 246 (675)
T ss_pred HHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHHHHHHHHHHHHHHHh
Confidence 3688999999999999999999999999999999874 111 23589999999999999999987776
Q ss_pred ccccCCEEEEEEeeeecCCC-------CccEEEEchHHHHHHHhcCCCCCCccEEEEeCCCcCCCCccHHHHHHHHHHhh
Q 001722 392 DTELGDKVGYAIRFEDVTGP-------STLIKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVAR 464 (1020)
Q Consensus 392 ~~~lG~~VGy~ir~e~~~s~-------~t~I~~~T~g~LLr~ll~d~~L~~~s~IIIDEaHERs~~tD~ll~lLk~il~~ 464 (1020)
|......+.+.++++..... ...|+++|+++ ..+.|.++++|||||||||+..+|+++++++.+...
T Consensus 247 g~~~~~g~~v~v~~Gg~~~~~~~t~~k~~~Ilv~T~~L------~l~~L~~v~~VVIDEaHEr~~~~DllL~llk~~~~~ 320 (675)
T PHA02653 247 GFDEIDGSPISLKYGSIPDELINTNPKPYGLVFSTHKL------TLNKLFDYGTVIIDEVHEHDQIGDIIIAVARKHIDK 320 (675)
T ss_pred CccccCCceEEEEECCcchHHhhcccCCCCEEEEeCcc------cccccccCCEEEccccccCccchhHHHHHHHHhhhh
Confidence 64322223446666655432 34588888764 235689999999999999999999999999877644
Q ss_pred cCCceEEEEeccC--CHHHHHHHhCCCCeEeecCcc-cceeeeecCCCc-----hhHHHHHHHHHHHHhhc---CCCCCE
Q 001722 465 RRDFKLIVTSATL--NAQKFSDFFGSVPIFHIPGRT-FPVNTLYSKTPC-----EDYVEAAVKQAMTIHIT---SPPGDI 533 (1020)
Q Consensus 465 r~~lklIlmSATl--d~~~f~~~f~~~pvi~i~gr~-~pV~i~y~~~~~-----~dyl~~av~~~l~i~~~---~~~g~I 533 (1020)
. .++|+||||+ +.+.|.+||++++++.++|++ +||+.+|..... .+|+......++..+.. ..+|++
T Consensus 321 ~--rq~ILmSATl~~dv~~l~~~~~~p~~I~I~grt~~pV~~~yi~~~~~~~~~~~y~~~~k~~~l~~L~~~~~~~~g~i 398 (675)
T PHA02653 321 I--RSLFLMTATLEDDRDRIKEFFPNPAFVHIPGGTLFPISEVYVKNKYNPKNKRAYIEEEKKNIVTALKKYTPPKGSSG 398 (675)
T ss_pred c--CEEEEEccCCcHhHHHHHHHhcCCcEEEeCCCcCCCeEEEEeecCcccccchhhhHHHHHHHHHHHHHhhcccCCcE
Confidence 3 3899999999 577899999999999999986 999999875432 23444333333333321 245799
Q ss_pred EEEcCCHHHHHHHHHHHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHHHh-cCCCeEEEEecchhhccCCCCCe
Q 001722 534 LIFMTGQDEIEAACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKA-KEGTRKCIVATNIAETSLTVDGI 612 (1020)
Q Consensus 534 LVFl~g~~eie~l~~~L~e~l~~l~~~~~~~~~~l~vl~lhs~L~~~eq~~I~~~f-~~g~rkVIVATniaEtGItIp~V 612 (1020)
||||||+.+|+.+++.|.+. .+++.+.++||+|++.+ .+++.| ++|+++|||||||||+|||||+|
T Consensus 399 LVFlpg~~ei~~l~~~L~~~-----------~~~~~v~~LHG~Lsq~e--q~l~~ff~~gk~kILVATdIAERGIDIp~V 465 (675)
T PHA02653 399 IVFVASVSQCEEYKKYLEKR-----------LPIYDFYIIHGKVPNID--EILEKVYSSKNPSIIISTPYLESSVTIRNA 465 (675)
T ss_pred EEEECcHHHHHHHHHHHHhh-----------cCCceEEeccCCcCHHH--HHHHHHhccCceeEEeccChhhccccccCe
Confidence 99999999999999988653 14688999999999864 444555 68999999999999999999999
Q ss_pred eEEEEcCCccceeccCCCCcccccccccCHHHHHHHhcccCCCCCCEEEEccChhhHhhccCCCCcchhcccchhHHHHH
Q 001722 613 FYVIDTGYGKMKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTGPGTCYRLYTESAYLNEMLPSPVPEIQRTNLGNVVLL 692 (1020)
Q Consensus 613 ~~VID~G~~K~~~yd~~~g~~~L~~~piS~as~~QRaGRAGR~g~G~cyrLyt~~~~~~~m~~~~~PEI~r~~L~~vvL~ 692 (1020)
++|||+|++|.. ++..|++ .|+|+++|.||+|||||.++|.||+||+++++ . +++++...+|.+++|+
T Consensus 466 ~~VID~G~~k~p--~~~~g~~----~~iSkasa~QRaGRAGR~~~G~c~rLyt~~~~----~--pI~ri~~~~L~~~vL~ 533 (675)
T PHA02653 466 THVYDTGRVYVP--EPFGGKE----MFISKSMRTQRKGRVGRVSPGTYVYFYDLDLL----K--PIKRIDSEFLHNYILY 533 (675)
T ss_pred eEEEECCCccCC--CcccCcc----cccCHHHHHHhccCcCCCCCCeEEEEECHHHh----H--HHHHHhHHHHHHHHHH
Confidence 999999988865 3555553 69999999999999999999999999999864 1 1333333448999999
Q ss_pred HhhcccCcccCCCCCCCCChhhHHHHHHHHHHhcCccCCCCccHH--HHHhhcCCCChHHHHHHhhhhc
Q 001722 693 LKSLKIDNLLDFDFMDPPPQENILNSMYQLWVLGALNNVGALTDL--GWKMVEFPLDPPLAKMLLMGEQ 759 (1020)
Q Consensus 693 lk~lgi~~~~~f~~~dpP~~~~i~~al~~L~~lgaLd~~g~LT~l--G~~ma~lPldp~lak~ll~~~~ 759 (1020)
+|+||++.. .+.|+|||+.+++..|++.|..+||+|+ +||.| |+.|+.+ ++||+++.|+.
T Consensus 534 lk~~g~~~~-~~~~ldpP~~~~l~~A~~~L~~lga~~~--~l~~l~~~~~~~~~----~~~k~~~~g~~ 595 (675)
T PHA02653 534 AKYFNLTLP-EDLFVIPSNLDRLRKTEEYIDSFNISIE--KWYEILSNYYVNML----EYAKIYVKGGI 595 (675)
T ss_pred HHHcCCCCc-ccccCCCCCHHHHHHHHHHHHHcCCCch--hhhhhhccccHHHH----HHhHHHhcccH
Confidence 999999544 4559999999999999999999998865 79999 9999999 99999998764
No 14
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=3.8e-42 Score=423.73 Aligned_cols=435 Identities=20% Similarity=0.176 Sum_probs=301.0
Q ss_pred CCCcHHHHHHHHHHHHhCCeEEEEecCCCchHHHHHHHHHHhcccCCCEEEEEcccHHHHHHHHHHHHHHhccccCCEEE
Q 001722 321 YLPIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELGDKVG 400 (1020)
Q Consensus 321 ~LPi~~~q~eil~~i~~~q~vII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~lA~qva~rva~e~~~~lG~~VG 400 (1020)
...++++|.++++.+.++++++|+||||||||+++.+++++.... +++++++.|+++||.++++.+.+ +. .+|..|+
T Consensus 20 ~~~l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~-~~k~v~i~P~raLa~q~~~~~~~-l~-~~g~~v~ 96 (674)
T PRK01172 20 DFELYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLA-GLKSIYIVPLRSLAMEKYEELSR-LR-SLGMRVK 96 (674)
T ss_pred CCCCCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHHh-CCcEEEEechHHHHHHHHHHHHH-Hh-hcCCeEE
Confidence 455899999999999999999999999999999999888876543 56788889999999999999865 32 3566676
Q ss_pred EEEeeeecC---CCCccEEEEchHHHHHHHhcCCC-CCCccEEEEeCCCcCCC--CccHHHHHHHHHHhhcCCceEEEEe
Q 001722 401 YAIRFEDVT---GPSTLIKYMTDGVLLRETLKDSD-LDKYRVIVMDEAHERSL--STDVLFGILKKVVARRRDFKLIVTS 474 (1020)
Q Consensus 401 y~ir~e~~~---s~~t~I~~~T~g~LLr~ll~d~~-L~~~s~IIIDEaHERs~--~tD~ll~lLk~il~~r~~lklIlmS 474 (1020)
+.+...+.. ....+|+++|++.+...+..++. +.++++|||||||..+- ....+..++..+...++++++|+||
T Consensus 97 ~~~G~~~~~~~~~~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDEaH~l~d~~rg~~le~ll~~~~~~~~~~riI~lS 176 (674)
T PRK01172 97 ISIGDYDDPPDFIKRYDVVILTSEKADSLIHHDPYIINDVGLIVADEIHIIGDEDRGPTLETVLSSARYVNPDARILALS 176 (674)
T ss_pred EEeCCCCCChhhhccCCEEEECHHHHHHHHhCChhHHhhcCEEEEecchhccCCCccHHHHHHHHHHHhcCcCCcEEEEe
Confidence 654322211 13568999999988776655544 88999999999996431 2223444455544456789999999
Q ss_pred ccC-CHHHHHHHhCCCCeEeecCcccceeee--ecCCCchh-HH--HHHHHHHHHHhhcCCCCCEEEEcCCHHHHHHHHH
Q 001722 475 ATL-NAQKFSDFFGSVPIFHIPGRTFPVNTL--YSKTPCED-YV--EAAVKQAMTIHITSPPGDILIFMTGQDEIEAACF 548 (1020)
Q Consensus 475 ATl-d~~~f~~~f~~~pvi~i~gr~~pV~i~--y~~~~~~d-yl--~~av~~~l~i~~~~~~g~ILVFl~g~~eie~l~~ 548 (1020)
||+ |+..+++|++ ++.+....+..|+.+. +......+ .. ...+...+.. ....++++||||+++++++.++.
T Consensus 177 ATl~n~~~la~wl~-~~~~~~~~r~vpl~~~i~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~vLVF~~sr~~~~~~a~ 254 (674)
T PRK01172 177 ATVSNANELAQWLN-ASLIKSNFRPVPLKLGILYRKRLILDGYERSQVDINSLIKE-TVNDGGQVLVFVSSRKNAEDYAE 254 (674)
T ss_pred CccCCHHHHHHHhC-CCccCCCCCCCCeEEEEEecCeeeecccccccccHHHHHHH-HHhCCCcEEEEeccHHHHHHHHH
Confidence 999 8999999997 4556666677776542 21111000 00 0001111111 12347899999999999999999
Q ss_pred HHHHHHHHhhccc-----c-------CCCCCeEEEEecCCCCHHHHHHHHHHhcCCCeEEEEecchhhccCCCCCeeEEE
Q 001722 549 ALKERMEQLISST-----T-------REVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAETSLTVDGIFYVI 616 (1020)
Q Consensus 549 ~L~e~l~~l~~~~-----~-------~~~~~l~vl~lhs~L~~~eq~~I~~~f~~g~rkVIVATniaEtGItIp~V~~VI 616 (1020)
.|.+.+....... . ...-...|..+||+|+.++|..|++.|++|.++|||||+++++|||+|+..+||
T Consensus 255 ~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ve~~f~~g~i~VLvaT~~la~Gvnipa~~VII 334 (674)
T PRK01172 255 MLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIEEMFRNRYIKVIVATPTLAAGVNLPARLVIV 334 (674)
T ss_pred HHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHHHHHHHHcCCCeEEEecchhhccCCCcceEEEE
Confidence 9877543211000 0 000123588999999999999999999999999999999999999999998888
Q ss_pred EcCCccceeccCCCCcccccccccCHHHHHHHhcccCCCC---CCEEEEccC-hh---hHhhccCCCCcc--------hh
Q 001722 617 DTGYGKMKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTG---PGTCYRLYT-ES---AYLNEMLPSPVP--------EI 681 (1020)
Q Consensus 617 D~G~~K~~~yd~~~g~~~L~~~piS~as~~QRaGRAGR~g---~G~cyrLyt-~~---~~~~~m~~~~~P--------EI 681 (1020)
+ + ...|+. ....|+|.++|.||+|||||.| .|.++.+.. .. .+...+...+.| ++
T Consensus 335 ~-~---~~~~~~------~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~~~~~~~~~~~~~l~~~~~pi~S~l~~~~~ 404 (674)
T PRK01172 335 R-D---ITRYGN------GGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYAASPASYDAAKKYLSGEPEPVISYMGSQRK 404 (674)
T ss_pred c-C---ceEeCC------CCceeCCHHHHHHHhhcCCCCCCCCcceEEEEecCcccHHHHHHHHcCCCCceeecCCCccc
Confidence 5 2 233432 2335899999999999999998 577776643 22 222223222222 33
Q ss_pred cccchhHHHHHHhhcccCcccCC---CCC--CCCC---hhhHHHHHHHHHHhcCccCCC--CccHHHHHhhcCCCChHHH
Q 001722 682 QRTNLGNVVLLLKSLKIDNLLDF---DFM--DPPP---QENILNSMYQLWVLGALNNVG--ALTDLGWKMVEFPLDPPLA 751 (1020)
Q Consensus 682 ~r~~L~~vvL~lk~lgi~~~~~f---~~~--dpP~---~~~i~~al~~L~~lgaLd~~g--~LT~lG~~ma~lPldp~la 751 (1020)
.+.++...+......+..|+.+| .|+ +.++ .+.+..+++.|...|+|+.++ .+|++|+.++.+|++|..+
T Consensus 405 ~~~~~l~~i~~g~~~~~~d~~~~l~~tf~~~~~~~~~l~~~v~~~l~~L~~~~~i~~~~~~~~t~lG~~~s~~~l~~~t~ 484 (674)
T PRK01172 405 VRFNTLAAISMGLASSMEDLILFYNETLMAIQNGVDEIDYYIESSLKFLKENGFIKGDVTLRATRLGKLTSDLYIDPESA 484 (674)
T ss_pred HHHHHHHHHHhcccCCHHHHHHHHHhhhhHhcCchHHHHHHHHHHHHHHHHCCCcccCCcEeECHHHHHHHHhCCCHHHH
Confidence 33333333333333333555444 444 4332 467899999999999998654 6799999999999999999
Q ss_pred HHHhhhhccC-cHHHHHHHH
Q 001722 752 KMLLMGEQLG-CLDEVLTIV 770 (1020)
Q Consensus 752 k~ll~~~~~~-c~~e~l~I~ 770 (1020)
++++.+..-. ....++.++
T Consensus 485 ~~~~~~l~~~~~~~~~l~~~ 504 (674)
T PRK01172 485 LILKSAFDHDYDEDLALYYI 504 (674)
T ss_pred HHHHHHhhccCCHHHHHHHh
Confidence 9998876543 233344444
No 15
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=7.1e-39 Score=397.80 Aligned_cols=440 Identities=19% Similarity=0.206 Sum_probs=301.5
Q ss_pred HHHHHcCCCcHHHHHHHHHH-HHhCCeEEEEecCCCchHHHHHHHHHHhcccCCCEEEEEcccHHHHHHHHHHHHHHhcc
Q 001722 315 LAEQRQYLPIFSVRDELLQV-IRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDT 393 (1020)
Q Consensus 315 l~~~R~~LPi~~~q~eil~~-i~~~q~vII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~lA~qva~rva~e~~~ 393 (1020)
....+..--++++|.++++. +.+++++++++|||||||+++..+++.... .+++++++.|+++||.|+++.+.. ++
T Consensus 15 ~l~~~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~-~~~kal~i~P~raLa~q~~~~~~~-~~- 91 (737)
T PRK02362 15 FYEAEGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIA-RGGKALYIVPLRALASEKFEEFER-FE- 91 (737)
T ss_pred HHHhCCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHh-cCCcEEEEeChHHHHHHHHHHHHH-hh-
Confidence 33344445588999999988 789999999999999999999888887654 467899999999999999999974 43
Q ss_pred ccCCEEEEEEeeeec---CCCCccEEEEchHHHHHHHhcC-CCCCCccEEEEeCCCcCC--CCccHHHHHHHHHHhhcCC
Q 001722 394 ELGDKVGYAIRFEDV---TGPSTLIKYMTDGVLLRETLKD-SDLDKYRVIVMDEAHERS--LSTDVLFGILKKVVARRRD 467 (1020)
Q Consensus 394 ~lG~~VGy~ir~e~~---~s~~t~I~~~T~g~LLr~ll~d-~~L~~~s~IIIDEaHERs--~~tD~ll~lLk~il~~r~~ 467 (1020)
.+|..|+......+. ......|+++|++.+...+... ..+.++++|||||+|.-+ -....+..++.++....++
T Consensus 92 ~~g~~v~~~tGd~~~~~~~l~~~~IiV~Tpek~~~llr~~~~~l~~v~lvViDE~H~l~d~~rg~~le~il~rl~~~~~~ 171 (737)
T PRK02362 92 ELGVRVGISTGDYDSRDEWLGDNDIIVATSEKVDSLLRNGAPWLDDITCVVVDEVHLIDSANRGPTLEVTLAKLRRLNPD 171 (737)
T ss_pred cCCCEEEEEeCCcCccccccCCCCEEEECHHHHHHHHhcChhhhhhcCEEEEECccccCCCcchHHHHHHHHHHHhcCCC
Confidence 235555432221111 1135789999999886655433 357899999999999422 1222333444555445678
Q ss_pred ceEEEEeccC-CHHHHHHHhCCCCeEeecCcccceeee--e------cCC----CchhHHHHHHHHHHHHhhcCCCCCEE
Q 001722 468 FKLIVTSATL-NAQKFSDFFGSVPIFHIPGRTFPVNTL--Y------SKT----PCEDYVEAAVKQAMTIHITSPPGDIL 534 (1020)
Q Consensus 468 lklIlmSATl-d~~~f~~~f~~~pvi~i~gr~~pV~i~--y------~~~----~~~dyl~~av~~~l~i~~~~~~g~IL 534 (1020)
+|+|+||||+ |++.+++|++.. .+....|..|+... + ... ..... ...+..+.... ..++++|
T Consensus 172 ~qii~lSATl~n~~~la~wl~~~-~~~~~~rpv~l~~~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~L 247 (737)
T PRK02362 172 LQVVALSATIGNADELADWLDAE-LVDSEWRPIDLREGVFYGGAIHFDDSQREVEVPSK-DDTLNLVLDTL--EEGGQCL 247 (737)
T ss_pred CcEEEEcccCCCHHHHHHHhCCC-cccCCCCCCCCeeeEecCCeeccccccccCCCccc-hHHHHHHHHHH--HcCCCeE
Confidence 9999999999 899999999742 33323333333221 1 110 00000 11222222222 2578999
Q ss_pred EEcCCHHHHHHHHHHHHHHHHHh------------hc----cccC-------CCCCeEEEEecCCCCHHHHHHHHHHhcC
Q 001722 535 IFMTGQDEIEAACFALKERMEQL------------IS----STTR-------EVPELLILPIYSQLPADLQAKIFEKAKE 591 (1020)
Q Consensus 535 VFl~g~~eie~l~~~L~e~l~~l------------~~----~~~~-------~~~~l~vl~lhs~L~~~eq~~I~~~f~~ 591 (1020)
|||+++.+++.++..|...+... .. .... ..-...|..+||+|+.++|..|++.|++
T Consensus 248 VF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gva~hHagl~~~eR~~ve~~Fr~ 327 (737)
T PRK02362 248 VFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKGAAFHHAGLSREHRELVEDAFRD 327 (737)
T ss_pred EEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhCEEeecCCCCHHHHHHHHHHHHc
Confidence 99999999999999887654310 00 0000 0012368999999999999999999999
Q ss_pred CCeEEEEecchhhccCCCCCeeEEEEcCCccceeccCCCCcccccccccCHHHHHHHhcccCCCCC---CEEEEccChhh
Q 001722 592 GTRKCIVATNIAETSLTVDGIFYVIDTGYGKMKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTGP---GTCYRLYTESA 668 (1020)
Q Consensus 592 g~rkVIVATniaEtGItIp~V~~VID~G~~K~~~yd~~~g~~~L~~~piS~as~~QRaGRAGR~g~---G~cyrLyt~~~ 668 (1020)
|.++|||||+++++|||+|++++||+. ...||+..|+ .|++..+|.||+|||||.|- |.||.++....
T Consensus 328 G~i~VLvaT~tla~GvnlPa~~VVI~~----~~~yd~~~g~-----~~~s~~~y~Qm~GRAGR~g~d~~G~~ii~~~~~~ 398 (737)
T PRK02362 328 RLIKVISSTPTLAAGLNLPARRVIIRD----YRRYDGGAGM-----QPIPVLEYHQMAGRAGRPGLDPYGEAVLLAKSYD 398 (737)
T ss_pred CCCeEEEechhhhhhcCCCceEEEEec----ceeecCCCCc-----eeCCHHHHHHHhhcCCCCCCCCCceEEEEecCch
Confidence 999999999999999999999999963 4568876554 58999999999999999983 99999986531
Q ss_pred ----HhhccCCCCcchhccc------chhHHHHHHhhccc----CcccCC---CCCCCCC------hhhHHHHHHHHHHh
Q 001722 669 ----YLNEMLPSPVPEIQRT------NLGNVVLLLKSLKI----DNLLDF---DFMDPPP------QENILNSMYQLWVL 725 (1020)
Q Consensus 669 ----~~~~m~~~~~PEI~r~------~L~~vvL~lk~lgi----~~~~~f---~~~dpP~------~~~i~~al~~L~~l 725 (1020)
+...+.. ..|+...+ .|...+|...+.|. .++.+| .|+..+. .+.+..+++.|...
T Consensus 399 ~~~~~~~~~l~-~~~~~i~S~l~~~~~l~~~lla~I~~~~~~~~~d~~~~l~~Tf~~~~~~~~~~l~~~v~~~l~~L~~~ 477 (737)
T PRK02362 399 ELDELFERYIW-ADPEDVRSKLATEPALRTHVLSTIASGFARTRDGLLEFLEATFYATQTDDTGRLERVVDDVLDFLERN 477 (737)
T ss_pred hHHHHHHHHHh-CCCCceeecCCChhhHHHHHHHHHHhCccCCHHHHHHHHHhChHHhhccchHHHHHHHHHHHHHHHHC
Confidence 1111211 12322222 34555565555552 233222 4443332 34588999999999
Q ss_pred cCccCCCC---ccHHHHHhhcCCCChHHHHHHhhhhccC---cHHHHHHHHH
Q 001722 726 GALNNVGA---LTDLGWKMVEFPLDPPLAKMLLMGEQLG---CLDEVLTIVS 771 (1020)
Q Consensus 726 gaLd~~g~---LT~lG~~ma~lPldp~lak~ll~~~~~~---c~~e~l~I~a 771 (1020)
|+|+.++. +|++|+.++.++++|..+..++.+.... ....++.+++
T Consensus 478 ~~i~~~~~~~~~t~lG~~~s~~~l~~~t~~~~~~~l~~~~~~~~~~~l~~i~ 529 (737)
T PRK02362 478 GMIEEDGETLEATELGHLVSRLYIDPLSAAEIIDGLEAAKKPTDLGLLHLVC 529 (737)
T ss_pred CCeeecCCeEeEChHHHHHHHhcCCHHHHHHHHHHhhhcccCchHHHHHHhh
Confidence 99987654 8999999999999999999998876532 2234554544
No 16
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=2.2e-36 Score=374.66 Aligned_cols=442 Identities=18% Similarity=0.163 Sum_probs=290.7
Q ss_pred HHHHHHHcCCCcHHHHHHHHHH-HHhCCeEEEEecCCCchHHHHHHHHHHhcccCCCEEEEEcccHHHHHHHHHHHHHHh
Q 001722 313 KTLAEQRQYLPIFSVRDELLQV-IRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEM 391 (1020)
Q Consensus 313 ~~l~~~R~~LPi~~~q~eil~~-i~~~q~vII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~lA~qva~rva~e~ 391 (1020)
.+..+.+..--++++|.++++. +.+++++++++|||||||+++..+++......+++++++.|+++||.++++++.. +
T Consensus 13 ~~~l~~~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~~~~~~l~l~P~~aLa~q~~~~~~~-~ 91 (720)
T PRK00254 13 KRVLKERGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLREGGKAVYLVPLKALAEEKYREFKD-W 91 (720)
T ss_pred HHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHhcCCeEEEEeChHHHHHHHHHHHHH-H
Confidence 3444555666688999999985 8899999999999999999998888887666678999999999999999998864 3
Q ss_pred ccccCCEEEEEEeeee---cCCCCccEEEEchHHHHHHHhcC-CCCCCccEEEEeCCCcCCC--CccHHHHHHHHHHhhc
Q 001722 392 DTELGDKVGYAIRFED---VTGPSTLIKYMTDGVLLRETLKD-SDLDKYRVIVMDEAHERSL--STDVLFGILKKVVARR 465 (1020)
Q Consensus 392 ~~~lG~~VGy~ir~e~---~~s~~t~I~~~T~g~LLr~ll~d-~~L~~~s~IIIDEaHERs~--~tD~ll~lLk~il~~r 465 (1020)
. .+|..|+......+ ......+|+++|++.+...+... ..+.++++|||||+|.-+- ....+..++.. ..
T Consensus 92 ~-~~g~~v~~~~Gd~~~~~~~~~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViDE~H~l~~~~rg~~le~il~~---l~ 167 (720)
T PRK00254 92 E-KLGLRVAMTTGDYDSTDEWLGKYDIIIATAEKFDSLLRHGSSWIKDVKLVVADEIHLIGSYDRGATLEMILTH---ML 167 (720)
T ss_pred h-hcCCEEEEEeCCCCCchhhhccCCEEEEcHHHHHHHHhCCchhhhcCCEEEEcCcCccCCccchHHHHHHHHh---cC
Confidence 2 34555553322111 11235689999999987655433 4588999999999995321 11122222322 23
Q ss_pred CCceEEEEeccC-CHHHHHHHhCCCCeEeecCccccee--eeec-----CCCc-hhHHHHHHHHHHHHhhcCCCCCEEEE
Q 001722 466 RDFKLIVTSATL-NAQKFSDFFGSVPIFHIPGRTFPVN--TLYS-----KTPC-EDYVEAAVKQAMTIHITSPPGDILIF 536 (1020)
Q Consensus 466 ~~lklIlmSATl-d~~~f~~~f~~~pvi~i~gr~~pV~--i~y~-----~~~~-~dyl~~av~~~l~i~~~~~~g~ILVF 536 (1020)
.+.++|+||||+ |+..+++|++. +.+....+..|+. +++. .... ..+.......+.... ..++++|||
T Consensus 168 ~~~qiI~lSATl~n~~~la~wl~~-~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i--~~~~~vLVF 244 (720)
T PRK00254 168 GRAQILGLSATVGNAEELAEWLNA-ELVVSDWRPVKLRKGVFYQGFLFWEDGKIERFPNSWESLVYDAV--KKGKGALVF 244 (720)
T ss_pred cCCcEEEEEccCCCHHHHHHHhCC-ccccCCCCCCcceeeEecCCeeeccCcchhcchHHHHHHHHHHH--HhCCCEEEE
Confidence 568999999999 89999999974 3333334444432 1111 1111 011111111111111 236789999
Q ss_pred cCCHHHHHHHHHHHHHHHHHhhccc------------c--C------CCCCeEEEEecCCCCHHHHHHHHHHhcCCCeEE
Q 001722 537 MTGQDEIEAACFALKERMEQLISST------------T--R------EVPELLILPIYSQLPADLQAKIFEKAKEGTRKC 596 (1020)
Q Consensus 537 l~g~~eie~l~~~L~e~l~~l~~~~------------~--~------~~~~l~vl~lhs~L~~~eq~~I~~~f~~g~rkV 596 (1020)
|+++..++.++..|.+.+....... . . ..-...|.++||+|++++|..|++.|++|.++|
T Consensus 245 ~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl~~~eR~~ve~~F~~G~i~V 324 (720)
T PRK00254 245 VNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAGLGRTERVLIEDAFREGLIKV 324 (720)
T ss_pred EcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCCCCHHHHHHHHHHHHCCCCeE
Confidence 9999999999887765432111000 0 0 001235899999999999999999999999999
Q ss_pred EEecchhhccCCCCCeeEEEEcCCccceeccCCCCcccccccccCHHHHHHHhcccCCCC---CCEEEEccChhh---Hh
Q 001722 597 IVATNIAETSLTVDGIFYVIDTGYGKMKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTG---PGTCYRLYTESA---YL 670 (1020)
Q Consensus 597 IVATniaEtGItIp~V~~VID~G~~K~~~yd~~~g~~~L~~~piS~as~~QRaGRAGR~g---~G~cyrLyt~~~---~~ 670 (1020)
||||+++++|||+|++++||... ..|+ ..++ .+.+..+|.||+|||||.| .|.|+.+.+... +.
T Consensus 325 LvaT~tLa~Gvnipa~~vVI~~~----~~~~-~~~~-----~~~~~~~~~Qm~GRAGR~~~d~~G~~ii~~~~~~~~~~~ 394 (720)
T PRK00254 325 ITATPTLSAGINLPAFRVIIRDT----KRYS-NFGW-----EDIPVLEIQQMMGRAGRPKYDEVGEAIIVATTEEPSKLM 394 (720)
T ss_pred EEeCcHHhhhcCCCceEEEECCc----eEcC-CCCc-----eeCCHHHHHHhhhccCCCCcCCCceEEEEecCcchHHHH
Confidence 99999999999999999999532 3454 1122 3566789999999999976 499999886432 11
Q ss_pred hccCCCCcchhcc------cchhHHHHHHhhcc-cCc---c---c--CCCCCCCCC----hhhHHHHHHHHHHhcCccCC
Q 001722 671 NEMLPSPVPEIQR------TNLGNVVLLLKSLK-IDN---L---L--DFDFMDPPP----QENILNSMYQLWVLGALNNV 731 (1020)
Q Consensus 671 ~~m~~~~~PEI~r------~~L~~vvL~lk~lg-i~~---~---~--~f~~~dpP~----~~~i~~al~~L~~lgaLd~~ 731 (1020)
..+. ...||-.. ..|...+|...+.+ +.+ + + .|-|...|+ .+.+..++..|...|+|+.+
T Consensus 395 ~~~~-~~~pe~l~s~l~~es~l~~~ll~~i~~~~~~~~~~~~~~l~~Tf~~~~~~~~~~~~~~v~~~l~~L~~~~~i~~~ 473 (720)
T PRK00254 395 ERYI-FGKPEKLFSMLSNESAFRSQVLALITNFGVSNFKELVNFLERTFYAHQRKDLYSLEEKAKEIVYFLLENEFIDID 473 (720)
T ss_pred HHHH-hCCchhhhccCCchHHHHHHHHHHHHhCCCCCHHHHHHHHHhCHHHHhhcChHhHHHHHHHHHHHHHHCCCeEEc
Confidence 1121 11122111 12233344443333 221 1 1 122222233 34677889999999998643
Q ss_pred --C--CccHHHHHhhcCCCChHHHHHHhhhhc----cCcHHHHHHHHHHh
Q 001722 732 --G--ALTDLGWKMVEFPLDPPLAKMLLMGEQ----LGCLDEVLTIVSML 773 (1020)
Q Consensus 732 --g--~LT~lG~~ma~lPldp~lak~ll~~~~----~~c~~e~l~I~a~l 773 (1020)
+ .+|++|+.++.++++|..++++..+.. ......++.+++..
T Consensus 474 ~~~~~~~t~lG~~~s~~~i~~~t~~~~~~~l~~~~~~~~~~~~l~~~~~~ 523 (720)
T PRK00254 474 LEDRFIPLPLGIRTSQLYIDPLTAKKFKDAFPKIEKNPNPLGIFQLIAST 523 (720)
T ss_pred CCCCEeeChHHHHHHHHhCCHHHHHHHHHHHHhhccCCCHHHHHHHhhCC
Confidence 3 469999999999999999999987653 23445566655543
No 17
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=6.1e-36 Score=353.38 Aligned_cols=315 Identities=20% Similarity=0.216 Sum_probs=233.0
Q ss_pred HcCCCcHHHHHHHHHHHHhCCeEEEEecCCCchHHHHHHHHHHhcccC--CCEEEEEcccHHHHHHHHHHHHHHhccccC
Q 001722 319 RQYLPIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTT--NGIVGCTQPRRVAAMSVAKRVSEEMDTELG 396 (1020)
Q Consensus 319 R~~LPi~~~q~eil~~i~~~q~vII~gpTGSGKTtqi~q~Lle~~~~~--~~~Il~tqPrR~lA~qva~rva~e~~~~lG 396 (1020)
...-..+++|.++++.+.+++++|++||||||||+++..++++..... ...++++.|+|+||.|+++.+........+
T Consensus 22 ~g~~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~ 101 (460)
T PRK11776 22 LGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVKRFRVQALVLCPTRELADQVAKEIRRLARFIPN 101 (460)
T ss_pred CCCCCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhccCCceEEEEeCCHHHHHHHHHHHHHHHhhCCC
Confidence 345557899999999999999999999999999999988888765332 346889999999999999887543221112
Q ss_pred CEEEEEEeeee------cCCCCccEEEEchHHHHHHHhcC-CCCCCccEEEEeCCCcCCCCccHHHHHHHHHHhhcCCce
Q 001722 397 DKVGYAIRFED------VTGPSTLIKYMTDGVLLRETLKD-SDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFK 469 (1020)
Q Consensus 397 ~~VGy~ir~e~------~~s~~t~I~~~T~g~LLr~ll~d-~~L~~~s~IIIDEaHERs~~tD~ll~lLk~il~~r~~lk 469 (1020)
..|.......+ .....+.|+++|+|.|+..+... ..+.++++||||||| +.++..+...+...+....++.+
T Consensus 102 ~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDEad-~~l~~g~~~~l~~i~~~~~~~~q 180 (460)
T PRK11776 102 IKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDEAD-RMLDMGFQDAIDAIIRQAPARRQ 180 (460)
T ss_pred cEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcCCccHHHCCEEEEECHH-HHhCcCcHHHHHHHHHhCCcccE
Confidence 33322111111 12346789999999999887654 358899999999999 44444443333322223345679
Q ss_pred EEEEeccCC--HHHHHHHhCCCCe-EeecCc--ccceeeeecCCCchhHHHHHHHHHHHHhhcCCCCCEEEEcCCHHHHH
Q 001722 470 LIVTSATLN--AQKFSDFFGSVPI-FHIPGR--TFPVNTLYSKTPCEDYVEAAVKQAMTIHITSPPGDILIFMTGQDEIE 544 (1020)
Q Consensus 470 lIlmSATld--~~~f~~~f~~~pv-i~i~gr--~~pV~i~y~~~~~~dyl~~av~~~l~i~~~~~~g~ILVFl~g~~eie 544 (1020)
+|++|||+. ...+...|...|. +.+... ...++.+|...+..+... .+..++ ....++.+||||+++..++
T Consensus 181 ~ll~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~k~~-~l~~ll---~~~~~~~~lVF~~t~~~~~ 256 (460)
T PRK11776 181 TLLFSATYPEGIAAISQRFQRDPVEVKVESTHDLPAIEQRFYEVSPDERLP-ALQRLL---LHHQPESCVVFCNTKKECQ 256 (460)
T ss_pred EEEEEecCcHHHHHHHHHhcCCCEEEEECcCCCCCCeeEEEEEeCcHHHHH-HHHHHH---HhcCCCceEEEECCHHHHH
Confidence 999999994 5566666655554 333322 122444444433333222 222222 2334678999999999999
Q ss_pred HHHHHHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHHHhcCCCeEEEEecchhhccCCCCCeeEEEEcCCccce
Q 001722 545 AACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAETSLTVDGIFYVIDTGYGKMK 624 (1020)
Q Consensus 545 ~l~~~L~e~l~~l~~~~~~~~~~l~vl~lhs~L~~~eq~~I~~~f~~g~rkVIVATniaEtGItIp~V~~VID~G~~K~~ 624 (1020)
.++..|.+. ++.+.++||+|++.+|..+++.|++|..+|||||+++++|||||+|++||+.+
T Consensus 257 ~l~~~L~~~-------------~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~~v~~VI~~d----- 318 (460)
T PRK11776 257 EVADALNAQ-------------GFSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKALEAVINYE----- 318 (460)
T ss_pred HHHHHHHhC-------------CCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEecccccccchhcCCeEEEec-----
Confidence 999988652 57799999999999999999999999999999999999999999999999944
Q ss_pred eccCCCCcccccccccCHHHHHHHhcccCCCC-CCEEEEccChhhH
Q 001722 625 VYNPKMGMDALQVFPVSRAAADQRAGRAGRTG-PGTCYRLYTESAY 669 (1020)
Q Consensus 625 ~yd~~~g~~~L~~~piS~as~~QRaGRAGR~g-~G~cyrLyt~~~~ 669 (1020)
.|.+..+|.||+|||||.| .|.||.|+++.+.
T Consensus 319 -------------~p~~~~~yiqR~GRtGR~g~~G~ai~l~~~~e~ 351 (460)
T PRK11776 319 -------------LARDPEVHVHRIGRTGRAGSKGLALSLVAPEEM 351 (460)
T ss_pred -------------CCCCHhHhhhhcccccCCCCcceEEEEEchhHH
Confidence 5889999999999999999 5999999998754
No 18
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.4e-36 Score=331.13 Aligned_cols=311 Identities=20% Similarity=0.274 Sum_probs=242.1
Q ss_pred CCCcHHHHHHHHHHHHhCCeEEEEecCCCchHHHHHHHHHHhcccCCC--EEEEEcccHHHHHHHHHHHHHHhccccCCE
Q 001722 321 YLPIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNG--IVGCTQPRRVAAMSVAKRVSEEMDTELGDK 398 (1020)
Q Consensus 321 ~LPi~~~q~eil~~i~~~q~vII~gpTGSGKTtqi~q~Lle~~~~~~~--~Il~tqPrR~lA~qva~rva~e~~~~lG~~ 398 (1020)
.--...+|.+.|+.+..|++||..|+||||||.++..+|+...+.... .++|+.|+|+||.|++..+ +.+|..+|-.
T Consensus 81 ~~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p~~~~~lVLtPtRELA~QI~e~f-e~Lg~~iglr 159 (476)
T KOG0330|consen 81 WKKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQEPKLFFALVLTPTRELAQQIAEQF-EALGSGIGLR 159 (476)
T ss_pred cCCCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcCCCCceEEEecCcHHHHHHHHHHH-HHhccccCeE
Confidence 344568999999999999999999999999999999999998887553 6889999999999999988 5566666655
Q ss_pred EEEEEeeee------cCCCCccEEEEchHHHHHHHhcC--CCCCCccEEEEeCCCcCCCCccHHHHHHHHHHhhcCCceE
Q 001722 399 VGYAIRFED------VTGPSTLIKYMTDGVLLRETLKD--SDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKL 470 (1020)
Q Consensus 399 VGy~ir~e~------~~s~~t~I~~~T~g~LLr~ll~d--~~L~~~s~IIIDEaHERs~~tD~ll~lLk~il~~r~~lkl 470 (1020)
|..-+.+.+ ..+...+|+++|||.|..++.+. ..|.++.++|+|||+ |-++.||...+=+.+-...++.+.
T Consensus 160 ~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDEAD-rlLd~dF~~~ld~ILk~ip~erqt 238 (476)
T KOG0330|consen 160 VAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTKGFSLEQLKFLVLDEAD-RLLDMDFEEELDYILKVIPRERQT 238 (476)
T ss_pred EEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhchHH-hhhhhhhHHHHHHHHHhcCccceE
Confidence 554444443 23467889999999999998744 347899999999999 899999865554444444567899
Q ss_pred EEEeccC--CHHHHHHHhCCCCeEeecCcccc----eeeeecCCCchhHHHHHHHHHHHHhhcCCCCCEEEEcCCHHHHH
Q 001722 471 IVTSATL--NAQKFSDFFGSVPIFHIPGRTFP----VNTLYSKTPCEDYVEAAVKQAMTIHITSPPGDILIFMTGQDEIE 544 (1020)
Q Consensus 471 IlmSATl--d~~~f~~~f~~~pvi~i~gr~~p----V~i~y~~~~~~dyl~~av~~~l~i~~~~~~g~ILVFl~g~~eie 544 (1020)
+++|||| .+.++..---..|+-......|. +..+|+..+..+. ...+-.++. ...++.+||||++....+
T Consensus 239 ~LfsATMt~kv~kL~rasl~~p~~v~~s~ky~tv~~lkQ~ylfv~~k~K-~~yLV~ll~---e~~g~s~iVF~~t~~tt~ 314 (476)
T KOG0330|consen 239 FLFSATMTKKVRKLQRASLDNPVKVAVSSKYQTVDHLKQTYLFVPGKDK-DTYLVYLLN---ELAGNSVIVFCNTCNTTR 314 (476)
T ss_pred EEEEeecchhhHHHHhhccCCCeEEeccchhcchHHhhhheEecccccc-chhHHHHHH---hhcCCcEEEEEeccchHH
Confidence 9999999 46666644333443222222222 2333433332211 111111121 123588999999999999
Q ss_pred HHHHHHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHHHhcCCCeEEEEecchhhccCCCCCeeEEEEcCCccce
Q 001722 545 AACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAETSLTVDGIFYVIDTGYGKMK 624 (1020)
Q Consensus 545 ~l~~~L~e~l~~l~~~~~~~~~~l~vl~lhs~L~~~eq~~I~~~f~~g~rkVIVATniaEtGItIp~V~~VID~G~~K~~ 624 (1020)
.++-.|+. .++..+++||+|++..|..+|+.|+.|.+.|+|||++|.+|+|||.|++|||
T Consensus 315 ~la~~L~~-------------lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDip~Vd~VVN------- 374 (476)
T KOG0330|consen 315 FLALLLRN-------------LGFQAIPLHGQMSQSKRLGALNKFKAGARSILVCTDVASRGLDIPHVDVVVN------- 374 (476)
T ss_pred HHHHHHHh-------------cCcceecccchhhHHHHHHHHHHHhccCCcEEEecchhcccCCCCCceEEEe-------
Confidence 99888864 3888999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCcccccccccCHHHHHHHhcccCCCC-CCEEEEccChhh
Q 001722 625 VYNPKMGMDALQVFPVSRAAADQRAGRAGRTG-PGTCYRLYTESA 668 (1020)
Q Consensus 625 ~yd~~~g~~~L~~~piS~as~~QRaGRAGR~g-~G~cyrLyt~~~ 668 (1020)
|| .|.+-.+|+||+||+||.| +|+++.|.|.-+
T Consensus 375 -yD----------iP~~skDYIHRvGRtaRaGrsG~~ItlVtqyD 408 (476)
T KOG0330|consen 375 -YD----------IPTHSKDYIHRVGRTARAGRSGKAITLVTQYD 408 (476)
T ss_pred -cC----------CCCcHHHHHHHcccccccCCCcceEEEEehhh
Confidence 88 8999999999999999999 699999999843
No 19
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=1.7e-35 Score=355.31 Aligned_cols=319 Identities=20% Similarity=0.220 Sum_probs=230.9
Q ss_pred HHHHcCCCcHHHHHHHHHHHHhCCeEEEEecCCCchHHHHHHHHHHhccc-------CCCEEEEEcccHHHHHHHHHHHH
Q 001722 316 AEQRQYLPIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYT-------TNGIVGCTQPRRVAAMSVAKRVS 388 (1020)
Q Consensus 316 ~~~R~~LPi~~~q~eil~~i~~~q~vII~gpTGSGKTtqi~q~Lle~~~~-------~~~~Il~tqPrR~lA~qva~rva 388 (1020)
+.....-..+++|.++++.+.+++++|+++|||||||+++..+++..... .+..++|++|+|+||.|+.+.+.
T Consensus 145 l~~~g~~~pt~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~~LIL~PTreLa~Qi~~~~~ 224 (545)
T PTZ00110 145 LKNAGFTEPTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPIVLVLAPTRELAEQIREQCN 224 (545)
T ss_pred HHHCCCCCCCHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcEEEEECChHHHHHHHHHHHH
Confidence 33445566889999999999999999999999999999987766654321 23578999999999999988874
Q ss_pred HHhccccCCEEEEEEeeee------cCCCCccEEEEchHHHHHHHhcC-CCCCCccEEEEeCCCcCCCCccHHHHHHHHH
Q 001722 389 EEMDTELGDKVGYAIRFED------VTGPSTLIKYMTDGVLLRETLKD-SDLDKYRVIVMDEAHERSLSTDVLFGILKKV 461 (1020)
Q Consensus 389 ~e~~~~lG~~VGy~ir~e~------~~s~~t~I~~~T~g~LLr~ll~d-~~L~~~s~IIIDEaHERs~~tD~ll~lLk~i 461 (1020)
. ++...+..+........ .......|+++|||.|++.+... ..|.++++||||||| +.++..+...+.+.+
T Consensus 225 ~-~~~~~~i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~~~~l~~v~~lViDEAd-~mld~gf~~~i~~il 302 (545)
T PTZ00110 225 K-FGASSKIRNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLESNVTNLRRVTYLVLDEAD-RMLDMGFEPQIRKIV 302 (545)
T ss_pred H-HhcccCccEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHcCCCChhhCcEEEeehHH-hhhhcchHHHHHHHH
Confidence 4 44333332222111111 11235689999999999887654 458899999999999 566666655444444
Q ss_pred HhhcCCceEEEEeccCC--HHHHHHHhC-CCCeEeecCcc-----cceeeeecCCCchhHHHHHHHHHHHHhhcCCCCCE
Q 001722 462 VARRRDFKLIVTSATLN--AQKFSDFFG-SVPIFHIPGRT-----FPVNTLYSKTPCEDYVEAAVKQAMTIHITSPPGDI 533 (1020)
Q Consensus 462 l~~r~~lklIlmSATld--~~~f~~~f~-~~pvi~i~gr~-----~pV~i~y~~~~~~dyl~~av~~~l~i~~~~~~g~I 533 (1020)
...+++.++|++|||+. ...++..+. ..|+....+.. ..+...+......+ ....+..++.... ...+++
T Consensus 303 ~~~~~~~q~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~~l~~~~~i~q~~~~~~~~~-k~~~L~~ll~~~~-~~~~k~ 380 (545)
T PTZ00110 303 SQIRPDRQTLMWSATWPKEVQSLARDLCKEEPVHVNVGSLDLTACHNIKQEVFVVEEHE-KRGKLKMLLQRIM-RDGDKI 380 (545)
T ss_pred HhCCCCCeEEEEEeCCCHHHHHHHHHHhccCCEEEEECCCccccCCCeeEEEEEEechh-HHHHHHHHHHHhc-ccCCeE
Confidence 45568899999999994 455655443 34443221211 11111111111111 1122222332221 256799
Q ss_pred EEEcCCHHHHHHHHHHHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHHHhcCCCeEEEEecchhhccCCCCCee
Q 001722 534 LIFMTGQDEIEAACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAETSLTVDGIF 613 (1020)
Q Consensus 534 LVFl~g~~eie~l~~~L~e~l~~l~~~~~~~~~~l~vl~lhs~L~~~eq~~I~~~f~~g~rkVIVATniaEtGItIp~V~ 613 (1020)
||||+++..++.++..|.. .++.+..+||++++++|..+++.|+.|..+|||||+++++|||||+|+
T Consensus 381 LIF~~t~~~a~~l~~~L~~-------------~g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~rGIDi~~v~ 447 (545)
T PTZ00110 381 LIFVETKKGADFLTKELRL-------------DGWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVASRGLDVKDVK 447 (545)
T ss_pred EEEecChHHHHHHHHHHHH-------------cCCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhhcCCCcccCC
Confidence 9999999999999888853 256788999999999999999999999999999999999999999999
Q ss_pred EEEEcCCccceeccCCCCcccccccccCHHHHHHHhcccCCCC-CCEEEEccChhhH
Q 001722 614 YVIDTGYGKMKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTG-PGTCYRLYTESAY 669 (1020)
Q Consensus 614 ~VID~G~~K~~~yd~~~g~~~L~~~piS~as~~QRaGRAGR~g-~G~cyrLyt~~~~ 669 (1020)
+||+ || .|.+.++|.||+|||||.| .|.||.||++.+.
T Consensus 448 ~VI~--------~d----------~P~s~~~yvqRiGRtGR~G~~G~ai~~~~~~~~ 486 (545)
T PTZ00110 448 YVIN--------FD----------FPNQIEDYVHRIGRTGRAGAKGASYTFLTPDKY 486 (545)
T ss_pred EEEE--------eC----------CCCCHHHHHHHhcccccCCCCceEEEEECcchH
Confidence 9999 55 5899999999999999998 5999999998754
No 20
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.4e-35 Score=346.64 Aligned_cols=314 Identities=18% Similarity=0.223 Sum_probs=226.6
Q ss_pred HHcCCCcHHHHHHHHHHHHhCCeEEEEecCCCchHHHHHHHHHHhccc---------CCCEEEEEcccHHHHHHHHHHHH
Q 001722 318 QRQYLPIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYT---------TNGIVGCTQPRRVAAMSVAKRVS 388 (1020)
Q Consensus 318 ~R~~LPi~~~q~eil~~i~~~q~vII~gpTGSGKTtqi~q~Lle~~~~---------~~~~Il~tqPrR~lA~qva~rva 388 (1020)
....-...++|.++++.+.+++++|++||||||||+++..++++.... .+.++++++|+|+||.|+++.+
T Consensus 25 ~~g~~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~lil~PtreLa~Qi~~~~- 103 (423)
T PRK04837 25 KKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRALIMAPTRELAVQIHADA- 103 (423)
T ss_pred HCCCCCCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceEEEECCcHHHHHHHHHHH-
Confidence 345556779999999999999999999999999999988887765432 2357999999999999998876
Q ss_pred HHhccccCCEEEEEEeeee------cCCCCccEEEEchHHHHHHHhcC-CCCCCccEEEEeCCCcCCCCccHHHHHHHHH
Q 001722 389 EEMDTELGDKVGYAIRFED------VTGPSTLIKYMTDGVLLRETLKD-SDLDKYRVIVMDEAHERSLSTDVLFGILKKV 461 (1020)
Q Consensus 389 ~e~~~~lG~~VGy~ir~e~------~~s~~t~I~~~T~g~LLr~ll~d-~~L~~~s~IIIDEaHERs~~tD~ll~lLk~i 461 (1020)
..+....|..++..+.... ......+|+++|||.|+..+... ..+.++++|||||||. .++..+... ++.+
T Consensus 104 ~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lViDEad~-l~~~~f~~~-i~~i 181 (423)
T PRK04837 104 EPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADR-MFDLGFIKD-IRWL 181 (423)
T ss_pred HHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccccEEEEecHHH-HhhcccHHH-HHHH
Confidence 3344445556655443322 12235689999999999887543 4588999999999994 333333222 2333
Q ss_pred HhhcC---CceEEEEeccCCH--HHHH-HHhCCCCeEeecCcc---cceeeeecCCCchhHHHHHHHHHHHHhhcCCCCC
Q 001722 462 VARRR---DFKLIVTSATLNA--QKFS-DFFGSVPIFHIPGRT---FPVNTLYSKTPCEDYVEAAVKQAMTIHITSPPGD 532 (1020)
Q Consensus 462 l~~r~---~lklIlmSATld~--~~f~-~~f~~~pvi~i~gr~---~pV~i~y~~~~~~dyl~~av~~~l~i~~~~~~g~ 532 (1020)
+...+ ..+.+++|||++. ..+. .++.+...+.+.... ..+...+......+.+ ..+...+ .....++
T Consensus 182 ~~~~~~~~~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v~~~~~~~~~i~~~~~~~~~~~k~-~~l~~ll---~~~~~~~ 257 (423)
T PRK04837 182 FRRMPPANQRLNMLFSATLSYRVRELAFEHMNNPEYVEVEPEQKTGHRIKEELFYPSNEEKM-RLLQTLI---EEEWPDR 257 (423)
T ss_pred HHhCCCccceeEEEEeccCCHHHHHHHHHHCCCCEEEEEcCCCcCCCceeEEEEeCCHHHHH-HHHHHHH---HhcCCCe
Confidence 33333 3457899999953 3333 344433333333211 1122111111111211 1222222 2234678
Q ss_pred EEEEcCCHHHHHHHHHHHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHHHhcCCCeEEEEecchhhccCCCCCe
Q 001722 533 ILIFMTGQDEIEAACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAETSLTVDGI 612 (1020)
Q Consensus 533 ILVFl~g~~eie~l~~~L~e~l~~l~~~~~~~~~~l~vl~lhs~L~~~eq~~I~~~f~~g~rkVIVATniaEtGItIp~V 612 (1020)
+||||+++..++.++..|.+ .++.+..+||+|+..+|..+++.|..|..+|||||+++++|||||+|
T Consensus 258 ~lVF~~t~~~~~~l~~~L~~-------------~g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGiDip~v 324 (423)
T PRK04837 258 AIIFANTKHRCEEIWGHLAA-------------DGHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAARGLHIPAV 324 (423)
T ss_pred EEEEECCHHHHHHHHHHHHh-------------CCCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEechhhcCCCcccc
Confidence 99999999999999888854 26779999999999999999999999999999999999999999999
Q ss_pred eEEEEcCCccceeccCCCCcccccccccCHHHHHHHhcccCCCC-CCEEEEccChhhH
Q 001722 613 FYVIDTGYGKMKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTG-PGTCYRLYTESAY 669 (1020)
Q Consensus 613 ~~VID~G~~K~~~yd~~~g~~~L~~~piS~as~~QRaGRAGR~g-~G~cyrLyt~~~~ 669 (1020)
++||+ || .|.|..+|.||+|||||.| .|.|+.|+++.+.
T Consensus 325 ~~VI~--------~d----------~P~s~~~yiqR~GR~gR~G~~G~ai~~~~~~~~ 364 (423)
T PRK04837 325 THVFN--------YD----------LPDDCEDYVHRIGRTGRAGASGHSISLACEEYA 364 (423)
T ss_pred CEEEE--------eC----------CCCchhheEeccccccCCCCCeeEEEEeCHHHH
Confidence 99999 55 5899999999999999999 5999999998753
No 21
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=7.1e-36 Score=334.81 Aligned_cols=437 Identities=18% Similarity=0.209 Sum_probs=307.2
Q ss_pred cCccccceEEEEecCCCCCCcCccccccccCCCccCCCCCCChHHHHHHhCChhhHHH---HHHHHHHHHHhhhHhhhcc
Q 001722 184 FDDEEEHKVILLVHDTKPPFLDGRIVFTKQAEPVMPIKDPTSDMAIISRKGSALVREI---REKQTQNKSRQRFWELAGS 260 (1020)
Q Consensus 184 ~~~~~~~~~~~~~~~~~p~fl~g~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~~~~~~---~~~~~~~~~~~~~~~~~~~ 260 (1020)
+.+.+.+.++-. ....|-|.+|.+......++-+.-.. .++|. -..+..-.++. +-++..++....-|.
T Consensus 136 dT~~d~~~l~~~-~~~i~~fgrG~~ag~d~~~qkk~~s~-~~~~~--e~r~t~~~ke~~~~~~qk~~k~~~k~~~D---- 207 (673)
T KOG0333|consen 136 DTSNDYNPLYSS-RHDIQLFGRGFVAGIDVKEQKKEKSK-YGEMM--EKRRTEDEKEQEEELLQKVCKKEAKSGWD---- 207 (673)
T ss_pred cccccchhhhcC-cccchhhccccccccchHHHHhhhhh-hhhHh--hhhcchhhhhhHHHHHHHhhhhhhhcccc----
Confidence 334444444333 33467799998776554443332222 55552 22222211111 111112223333343
Q ss_pred ccccccccccccccccccccccCccCccccccchhhhhhhhcccccchhhhhHHHHHHHcCCCcHHHHHHHHHHHHhCCe
Q 001722 261 QMGNILGVKKTAEQVDADTAVVGEQGEIDFREDAKFSQHMKKGEAVSDFAKSKTLAEQRQYLPIFSVRDELLQVIRENQV 340 (1020)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~~LPi~~~q~eil~~i~~~q~ 340 (1020)
..+|..+..+++.+.||..+.++-.|..+.. ...+.+..++......+..++.+.-.+.-..++|..++....++++
T Consensus 208 --drhW~~k~l~Em~~rdwri~redynis~kg~-~lpnplrnwEE~~~P~e~l~~I~~~~y~eptpIqR~aipl~lQ~rD 284 (673)
T KOG0333|consen 208 --DRHWSEKVLAEMTERDWRIFREDYNISIKGG-RLPNPLRNWEESGFPLELLSVIKKPGYKEPTPIQRQAIPLGLQNRD 284 (673)
T ss_pred --ccchhhhhHHhcCCccceeeecceeeeecCC-CCCccccChhhcCCCHHHHHHHHhcCCCCCchHHHhhccchhccCC
Confidence 3566677778888999999999888877654 3555677777666666667777777888888999999999999999
Q ss_pred EEEEecCCCchHHHHHHHHHHhcc-----------cCCCEEEEEcccHHHHHHHHHHHHHHhccccCCEEEE---EEeee
Q 001722 341 VVVVGETGSGKTTQLTQYLLEDGY-----------TTNGIVGCTQPRRVAAMSVAKRVSEEMDTELGDKVGY---AIRFE 406 (1020)
Q Consensus 341 vII~gpTGSGKTtqi~q~Lle~~~-----------~~~~~Il~tqPrR~lA~qva~rva~e~~~~lG~~VGy---~ir~e 406 (1020)
+|.+++||||||.+++.+|+...- ..+...+++.|+|.||.|+...- ..+++.+|..+-- +.+|+
T Consensus 285 ~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~~~gpyaiilaptReLaqqIeeEt-~kf~~~lg~r~vsvigg~s~E 363 (673)
T KOG0333|consen 285 PIGVAETGSGKTAAFLIPLLIWISSLPPMARLENNIEGPYAIILAPTRELAQQIEEET-NKFGKPLGIRTVSVIGGLSFE 363 (673)
T ss_pred eeeEEeccCCccccchhhHHHHHHcCCCcchhhhcccCceeeeechHHHHHHHHHHHH-HHhcccccceEEEEecccchh
Confidence 999999999999988777765321 12457889999999999998765 4566666654322 23444
Q ss_pred e---cCCCCccEEEEchHHHHHHHhcC-CCCCCccEEEEeCCCcCCCCccHHHHHHHHHHhhc-----C-----------
Q 001722 407 D---VTGPSTLIKYMTDGVLLRETLKD-SDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARR-----R----------- 466 (1020)
Q Consensus 407 ~---~~s~~t~I~~~T~g~LLr~ll~d-~~L~~~s~IIIDEaHERs~~tD~ll~lLk~il~~r-----~----------- 466 (1020)
. ..+..+.|+++|||.|+..+-+. ..|+++.+||+|||+ |.+++.+--.+.+.+-... |
T Consensus 364 Eq~fqls~gceiviatPgrLid~Lenr~lvl~qctyvvldead-rmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~ 442 (673)
T KOG0333|consen 364 EQGFQLSMGCEIVIATPGRLIDSLENRYLVLNQCTYVVLDEAD-RMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERV 442 (673)
T ss_pred hhhhhhhccceeeecCchHHHHHHHHHHHHhccCceEeccchh-hhhcccccHHHHHHHHhCCccccCCCccchhhHHHH
Confidence 4 35678999999999999877543 348899999999999 6777766555554443211 0
Q ss_pred ---------CceEEEEeccCC--HHHHH-HHhCCCCeEeec--Ccccc-eeeeecCCCchhHHHHHHHHHHHHhhcCCCC
Q 001722 467 ---------DFKLIVTSATLN--AQKFS-DFFGSVPIFHIP--GRTFP-VNTLYSKTPCEDYVEAAVKQAMTIHITSPPG 531 (1020)
Q Consensus 467 ---------~lklIlmSATld--~~~f~-~~f~~~pvi~i~--gr~~p-V~i~y~~~~~~dyl~~av~~~l~i~~~~~~g 531 (1020)
-.+.+.+||||. ++.++ .||..+-+++|. |+..| ++......+..+. .+.++.+.......
T Consensus 443 ~~~~~~~k~yrqT~mftatm~p~verlar~ylr~pv~vtig~~gk~~~rveQ~v~m~~ed~k----~kkL~eil~~~~~p 518 (673)
T KOG0333|consen 443 RKNFSSSKKYRQTVMFTATMPPAVERLARSYLRRPVVVTIGSAGKPTPRVEQKVEMVSEDEK----RKKLIEILESNFDP 518 (673)
T ss_pred HhhcccccceeEEEEEecCCChHHHHHHHHHhhCCeEEEeccCCCCccchheEEEEecchHH----HHHHHHHHHhCCCC
Confidence 157899999994 55555 577665555554 34333 2211111111111 22222332233467
Q ss_pred CEEEEcCCHHHHHHHHHHHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHHHhcCCCeEEEEecchhhccCCCCC
Q 001722 532 DILIFMTGQDEIEAACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAETSLTVDG 611 (1020)
Q Consensus 532 ~ILVFl~g~~eie~l~~~L~e~l~~l~~~~~~~~~~l~vl~lhs~L~~~eq~~I~~~f~~g~rkVIVATniaEtGItIp~ 611 (1020)
+|+||+++++.|+.++..|.+ .++.+..|||+-++++|..+++.|+.|...|+|||++|++|||||+
T Consensus 519 piIIFvN~kk~~d~lAk~LeK-------------~g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDvAgRGIDIpn 585 (673)
T KOG0333|consen 519 PIIIFVNTKKGADALAKILEK-------------AGYKVTTLHGGKSQEQRENALADFREGTGDILVATDVAGRGIDIPN 585 (673)
T ss_pred CEEEEEechhhHHHHHHHHhh-------------ccceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEecccccCCCCCc
Confidence 899999999999999988865 2689999999999999999999999999999999999999999999
Q ss_pred eeEEEEcCCccceeccCCCCcccccccccCHHHHHHHhcccCCCCC-CEEEEccChhh
Q 001722 612 IFYVIDTGYGKMKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTGP-GTCYRLYTESA 668 (1020)
Q Consensus 612 V~~VID~G~~K~~~yd~~~g~~~L~~~piS~as~~QRaGRAGR~g~-G~cyrLyt~~~ 668 (1020)
|.+||| || .+.|...|.||+||+||.|. |.+..|||+.+
T Consensus 586 VSlVin--------yd----------maksieDYtHRIGRTgRAGk~GtaiSflt~~d 625 (673)
T KOG0333|consen 586 VSLVIN--------YD----------MAKSIEDYTHRIGRTGRAGKSGTAISFLTPAD 625 (673)
T ss_pred cceeee--------cc----------hhhhHHHHHHHhccccccccCceeEEEeccch
Confidence 999999 77 78899999999999999996 99999999887
No 22
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=4.1e-35 Score=343.88 Aligned_cols=320 Identities=19% Similarity=0.225 Sum_probs=232.9
Q ss_pred HHHHHHcCCCcHHHHHHHHHHHHhCCeEEEEecCCCchHHHHHHHHHHhccc------CCCEEEEEcccHHHHHHHHHHH
Q 001722 314 TLAEQRQYLPIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYT------TNGIVGCTQPRRVAAMSVAKRV 387 (1020)
Q Consensus 314 ~l~~~R~~LPi~~~q~eil~~i~~~q~vII~gpTGSGKTtqi~q~Lle~~~~------~~~~Il~tqPrR~lA~qva~rv 387 (1020)
+.+.....-..+++|.+++..+.++++++++||||||||+++..+++..... ...+++|++|+++||.|+++.+
T Consensus 14 ~~l~~~g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~Pt~eLa~Q~~~~~ 93 (434)
T PRK11192 14 EALQDKGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILTPTRELAMQVADQA 93 (434)
T ss_pred HHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEECCcHHHHHHHHHHH
Confidence 3444456667889999999999999999999999999999987777665321 1358999999999999999887
Q ss_pred HHHhccccCCEEEEEEeeee------cCCCCccEEEEchHHHHHHHhcCC-CCCCccEEEEeCCCcCCCCccHHHHHHHH
Q 001722 388 SEEMDTELGDKVGYAIRFED------VTGPSTLIKYMTDGVLLRETLKDS-DLDKYRVIVMDEAHERSLSTDVLFGILKK 460 (1020)
Q Consensus 388 a~e~~~~lG~~VGy~ir~e~------~~s~~t~I~~~T~g~LLr~ll~d~-~L~~~s~IIIDEaHERs~~tD~ll~lLk~ 460 (1020)
.. +....+..++....... ....+..|+++|+|.|+..+.... .+.++++||||||| +.+...+...+...
T Consensus 94 ~~-l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDEah-~~l~~~~~~~~~~i 171 (434)
T PRK11192 94 RE-LAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEENFDCRAVETLILDEAD-RMLDMGFAQDIETI 171 (434)
T ss_pred HH-HHccCCcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCcCcccCCEEEEECHH-HHhCCCcHHHHHHH
Confidence 44 33344545543322211 123467899999999998876554 47899999999999 44444333222222
Q ss_pred HHhhcCCceEEEEeccCC---HHHHHHHhCCCCeE-eecCcc---cceeeeecCCCchhHHHHHHHHHHHHhhcCCCCCE
Q 001722 461 VVARRRDFKLIVTSATLN---AQKFSDFFGSVPIF-HIPGRT---FPVNTLYSKTPCEDYVEAAVKQAMTIHITSPPGDI 533 (1020)
Q Consensus 461 il~~r~~lklIlmSATld---~~~f~~~f~~~pvi-~i~gr~---~pV~i~y~~~~~~dyl~~av~~~l~i~~~~~~g~I 533 (1020)
....+...+++++|||++ ...|..++.+.|+. .+.... ..+...|............+.. +......+.+
T Consensus 172 ~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~---l~~~~~~~~~ 248 (434)
T PRK11192 172 AAETRWRKQTLLFSATLEGDAVQDFAERLLNDPVEVEAEPSRRERKKIHQWYYRADDLEHKTALLCH---LLKQPEVTRS 248 (434)
T ss_pred HHhCccccEEEEEEeecCHHHHHHHHHHHccCCEEEEecCCcccccCceEEEEEeCCHHHHHHHHHH---HHhcCCCCeE
Confidence 223345678999999995 45566666555543 222111 1122222222211222222222 2222356789
Q ss_pred EEEcCCHHHHHHHHHHHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHHHhcCCCeEEEEecchhhccCCCCCee
Q 001722 534 LIFMTGQDEIEAACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAETSLTVDGIF 613 (1020)
Q Consensus 534 LVFl~g~~eie~l~~~L~e~l~~l~~~~~~~~~~l~vl~lhs~L~~~eq~~I~~~f~~g~rkVIVATniaEtGItIp~V~ 613 (1020)
||||+++++++.++..|.+ .++.+..+||+|+..+|..+++.|.+|..+|||||+++++|||||+|.
T Consensus 249 lVF~~s~~~~~~l~~~L~~-------------~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDip~v~ 315 (434)
T PRK11192 249 IVFVRTRERVHELAGWLRK-------------AGINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDIDDVS 315 (434)
T ss_pred EEEeCChHHHHHHHHHHHh-------------CCCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEccccccCccCCCCC
Confidence 9999999999999998864 257789999999999999999999999999999999999999999999
Q ss_pred EEEEcCCccceeccCCCCcccccccccCHHHHHHHhcccCCCC-CCEEEEccChhhH
Q 001722 614 YVIDTGYGKMKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTG-PGTCYRLYTESAY 669 (1020)
Q Consensus 614 ~VID~G~~K~~~yd~~~g~~~L~~~piS~as~~QRaGRAGR~g-~G~cyrLyt~~~~ 669 (1020)
+||+ || .|.|...|.||+|||||.| .|.++.|++..++
T Consensus 316 ~VI~--------~d----------~p~s~~~yiqr~GR~gR~g~~g~ai~l~~~~d~ 354 (434)
T PRK11192 316 HVIN--------FD----------MPRSADTYLHRIGRTGRAGRKGTAISLVEAHDH 354 (434)
T ss_pred EEEE--------EC----------CCCCHHHHhhcccccccCCCCceEEEEecHHHH
Confidence 9998 55 5899999999999999998 5999999987765
No 23
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=5.3e-35 Score=344.93 Aligned_cols=315 Identities=18% Similarity=0.214 Sum_probs=226.2
Q ss_pred HHcCCCcHHHHHHHHHHHHhCCeEEEEecCCCchHHHHHHHHHHhcccC--------CCEEEEEcccHHHHHHHHHHHHH
Q 001722 318 QRQYLPIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTT--------NGIVGCTQPRRVAAMSVAKRVSE 389 (1020)
Q Consensus 318 ~R~~LPi~~~q~eil~~i~~~q~vII~gpTGSGKTtqi~q~Lle~~~~~--------~~~Il~tqPrR~lA~qva~rva~ 389 (1020)
....--.+++|.++++.+.+++++|+++|||||||.++..++++..... ..++++++|+|+||.|+...+..
T Consensus 18 ~~g~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~~~~ 97 (456)
T PRK10590 18 EQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRD 97 (456)
T ss_pred HCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEEeCcHHHHHHHHHHHHH
Confidence 3455567899999999999999999999999999999888887764321 13689999999999999998865
Q ss_pred HhccccCCEEEEEEeeee------cCCCCccEEEEchHHHHHHHhcCC-CCCCccEEEEeCCCcCCCCccHHHHHHHHHH
Q 001722 390 EMDTELGDKVGYAIRFED------VTGPSTLIKYMTDGVLLRETLKDS-DLDKYRVIVMDEAHERSLSTDVLFGILKKVV 462 (1020)
Q Consensus 390 e~~~~lG~~VGy~ir~e~------~~s~~t~I~~~T~g~LLr~ll~d~-~L~~~s~IIIDEaHERs~~tD~ll~lLk~il 462 (1020)
.. ..++..+...+...+ ......+|+|+|++.|+..+.... .++++++||||||| +.+...+...+...+.
T Consensus 98 ~~-~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDEah-~ll~~~~~~~i~~il~ 175 (456)
T PRK10590 98 YS-KYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEAD-RMLDMGFIHDIRRVLA 175 (456)
T ss_pred Hh-ccCCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcCCcccccceEEEeecHH-HHhccccHHHHHHHHH
Confidence 43 223322211111111 123457899999999998776543 58999999999999 4444444333322222
Q ss_pred hhcCCceEEEEeccCC--HHHHHHHhCCCC-eEeecCccc---ceeeeecCCCchhHHHHHHHHHHHHhhcCCCCCEEEE
Q 001722 463 ARRRDFKLIVTSATLN--AQKFSDFFGSVP-IFHIPGRTF---PVNTLYSKTPCEDYVEAAVKQAMTIHITSPPGDILIF 536 (1020)
Q Consensus 463 ~~r~~lklIlmSATld--~~~f~~~f~~~p-vi~i~gr~~---pV~i~y~~~~~~dyl~~av~~~l~i~~~~~~g~ILVF 536 (1020)
......+++++|||+. ...+...+...| .+.+..+.. .+..++...... .....+..++ ......++|||
T Consensus 176 ~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~-~k~~~l~~l~---~~~~~~~~lVF 251 (456)
T PRK10590 176 KLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASEQVTQHVHFVDKK-RKRELLSQMI---GKGNWQQVLVF 251 (456)
T ss_pred hCCccCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEecccccccceeEEEEEcCHH-HHHHHHHHHH---HcCCCCcEEEE
Confidence 3345678999999995 445555444334 333332211 122222211111 1112222221 22345689999
Q ss_pred cCCHHHHHHHHHHHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHHHhcCCCeEEEEecchhhccCCCCCeeEEE
Q 001722 537 MTGQDEIEAACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAETSLTVDGIFYVI 616 (1020)
Q Consensus 537 l~g~~eie~l~~~L~e~l~~l~~~~~~~~~~l~vl~lhs~L~~~eq~~I~~~f~~g~rkVIVATniaEtGItIp~V~~VI 616 (1020)
|+++.+++.+++.|.+ .++.+..+||+|+..+|..+++.|.+|..+|||||+++++|||||+|++||
T Consensus 252 ~~t~~~~~~l~~~L~~-------------~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip~v~~VI 318 (456)
T PRK10590 252 TRTKHGANHLAEQLNK-------------DGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVV 318 (456)
T ss_pred cCcHHHHHHHHHHHHH-------------CCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCcccCCEEE
Confidence 9999999999988854 256789999999999999999999999999999999999999999999999
Q ss_pred EcCCccceeccCCCCcccccccccCHHHHHHHhcccCCCCC-CEEEEccChhhH
Q 001722 617 DTGYGKMKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTGP-GTCYRLYTESAY 669 (1020)
Q Consensus 617 D~G~~K~~~yd~~~g~~~L~~~piS~as~~QRaGRAGR~g~-G~cyrLyt~~~~ 669 (1020)
+ || .|.+..+|+||+|||||.|. |.|+.|++..+.
T Consensus 319 ~--------~~----------~P~~~~~yvqR~GRaGR~g~~G~ai~l~~~~d~ 354 (456)
T PRK10590 319 N--------YE----------LPNVPEDYVHRIGRTGRAAATGEALSLVCVDEH 354 (456)
T ss_pred E--------eC----------CCCCHHHhhhhccccccCCCCeeEEEEecHHHH
Confidence 8 44 58999999999999999994 999999987654
No 24
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.3e-35 Score=339.46 Aligned_cols=323 Identities=20% Similarity=0.245 Sum_probs=246.6
Q ss_pred HHHHHHHcCCCcHHHHHHHHHHHHhCCeEEEEecCCCchHHHHHHHHHHhccc--------CCCEEEEEcccHHHHHHHH
Q 001722 313 KTLAEQRQYLPIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYT--------TNGIVGCTQPRRVAAMSVA 384 (1020)
Q Consensus 313 ~~l~~~R~~LPi~~~q~eil~~i~~~q~vII~gpTGSGKTtqi~q~Lle~~~~--------~~~~Il~tqPrR~lA~qva 384 (1020)
..++..+..--.+++|.+.+..+..++++|.++.||||||+.+..+++..... .+..++|+.|||+||.|+.
T Consensus 103 ~~~lk~~g~~~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL~PTRELA~QV~ 182 (519)
T KOG0331|consen 103 MKALKEQGFEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVLAPTRELAVQVQ 182 (519)
T ss_pred HHHHHhcCCCCCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEEcCcHHHHHHHH
Confidence 44555566666788999999999999999999999999999987776665432 2347999999999999999
Q ss_pred HHHHHHhccccC--CEEEEE-Eeee---ecCCCCccEEEEchHHHHHHHhcC-CCCCCccEEEEeCCCcCCCCccHHHHH
Q 001722 385 KRVSEEMDTELG--DKVGYA-IRFE---DVTGPSTLIKYMTDGVLLRETLKD-SDLDKYRVIVMDEAHERSLSTDVLFGI 457 (1020)
Q Consensus 385 ~rva~e~~~~lG--~~VGy~-ir~e---~~~s~~t~I~~~T~g~LLr~ll~d-~~L~~~s~IIIDEaHERs~~tD~ll~l 457 (1020)
+.+ .+++..++ ..+-|+ +... ........|++.|||.|+..+... -.|++++++|+|||+ |+++++|--.+
T Consensus 183 ~~~-~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDEAD-rMldmGFe~qI 260 (519)
T KOG0331|consen 183 AEA-REFGKSLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEAD-RMLDMGFEPQI 260 (519)
T ss_pred HHH-HHHcCCCCccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHcCCccccceeEEEeccHH-hhhccccHHHH
Confidence 877 55555544 223231 1111 122346789999999999988654 469999999999999 99999977666
Q ss_pred HHHHHhh-cCCceEEEEeccCC--HHHHHHHhCCCCeEeecCccc------ceeeeecCCCchhH-HHHHHHHHHHHhhc
Q 001722 458 LKKVVAR-RRDFKLIVTSATLN--AQKFSDFFGSVPIFHIPGRTF------PVNTLYSKTPCEDY-VEAAVKQAMTIHIT 527 (1020)
Q Consensus 458 Lk~il~~-r~~lklIlmSATld--~~~f~~~f~~~pvi~i~gr~~------pV~i~y~~~~~~dy-l~~av~~~l~i~~~ 527 (1020)
-+.+-+. +++.++|+.|||.. +..|+.-|.+.|+-..-|..- .+..+. ..+... ....+..++..+..
T Consensus 261 ~~Il~~i~~~~rQtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~~~~a~~~i~qiv--e~~~~~~K~~~l~~lL~~~~~ 338 (519)
T KOG0331|consen 261 RKILSQIPRPDRQTLMFSATWPKEVRQLAEDFLNNPIQINVGNKKELKANHNIRQIV--EVCDETAKLRKLGKLLEDISS 338 (519)
T ss_pred HHHHHhcCCCcccEEEEeeeccHHHHHHHHHHhcCceEEEecchhhhhhhcchhhhh--hhcCHHHHHHHHHHHHHHHhc
Confidence 6666666 55667999999994 667776554455433333210 111110 111111 12234445555556
Q ss_pred CCCCCEEEEcCCHHHHHHHHHHHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHHHhcCCCeEEEEecchhhccC
Q 001722 528 SPPGDILIFMTGQDEIEAACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAETSL 607 (1020)
Q Consensus 528 ~~~g~ILVFl~g~~eie~l~~~L~e~l~~l~~~~~~~~~~l~vl~lhs~L~~~eq~~I~~~f~~g~rkVIVATniaEtGI 607 (1020)
...+++||||.++..|+.+...|+.. .+.+..+||..++.+|..+++.|++|...||||||+|++||
T Consensus 339 ~~~~KvIIFc~tkr~~~~l~~~l~~~-------------~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAaRGL 405 (519)
T KOG0331|consen 339 DSEGKVIIFCETKRTCDELARNLRRK-------------GWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAARGL 405 (519)
T ss_pred cCCCcEEEEecchhhHHHHHHHHHhc-------------CcceeeecccccHHHHHHHHHhcccCCcceEEEcccccccC
Confidence 67899999999999999999888642 47899999999999999999999999999999999999999
Q ss_pred CCCCeeEEEEcCCccceeccCCCCcccccccccCHHHHHHHhcccCCCC-CCEEEEccChhhHh
Q 001722 608 TVDGIFYVIDTGYGKMKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTG-PGTCYRLYTESAYL 670 (1020)
Q Consensus 608 tIp~V~~VID~G~~K~~~yd~~~g~~~L~~~piS~as~~QRaGRAGR~g-~G~cyrLyt~~~~~ 670 (1020)
|||+|++||+ || .|-+.++|+||+||+||.| .|.+|.+|+...+.
T Consensus 406 Di~dV~lVIn--------yd----------fP~~vEdYVHRiGRTGRa~~~G~A~tfft~~~~~ 451 (519)
T KOG0331|consen 406 DVPDVDLVIN--------YD----------FPNNVEDYVHRIGRTGRAGKKGTAITFFTSDNAK 451 (519)
T ss_pred CCccccEEEe--------CC----------CCCCHHHHHhhcCccccCCCCceEEEEEeHHHHH
Confidence 9999999999 77 7999999999999999987 59999999988763
No 25
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=7e-35 Score=348.59 Aligned_cols=319 Identities=18% Similarity=0.189 Sum_probs=230.2
Q ss_pred HHHHcCCCcHHHHHHHHHHHHhCCeEEEEecCCCchHHHHHHHHHHhcc---------cCCCEEEEEcccHHHHHHHHHH
Q 001722 316 AEQRQYLPIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGY---------TTNGIVGCTQPRRVAAMSVAKR 386 (1020)
Q Consensus 316 ~~~R~~LPi~~~q~eil~~i~~~q~vII~gpTGSGKTtqi~q~Lle~~~---------~~~~~Il~tqPrR~lA~qva~r 386 (1020)
+.....--.+++|.++++.+..++++|+++|||||||+++..+++.... ..+..++++.|+|+||.|+...
T Consensus 136 L~~~g~~~ptpiQ~~aip~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~~aLIL~PTreLa~Qi~~~ 215 (518)
T PLN00206 136 LETAGYEFPTPIQMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPLAMVLTPTRELCVQVEDQ 215 (518)
T ss_pred HHHcCCCCCCHHHHHHHHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCceEEEEeCCHHHHHHHHHH
Confidence 3444556678999999999999999999999999999998888776432 1345899999999999998877
Q ss_pred HHHHhccccCCEEEEEEeeee------cCCCCccEEEEchHHHHHHHhcC-CCCCCccEEEEeCCCcCCCCccHHHHHHH
Q 001722 387 VSEEMDTELGDKVGYAIRFED------VTGPSTLIKYMTDGVLLRETLKD-SDLDKYRVIVMDEAHERSLSTDVLFGILK 459 (1020)
Q Consensus 387 va~e~~~~lG~~VGy~ir~e~------~~s~~t~I~~~T~g~LLr~ll~d-~~L~~~s~IIIDEaHERs~~tD~ll~lLk 459 (1020)
+. .++..++..+...+.++. .......|+++|||.|+..+... ..+.++++|||||||. .++..+. ..+.
T Consensus 216 ~~-~l~~~~~~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~~~~~l~~v~~lViDEad~-ml~~gf~-~~i~ 292 (518)
T PLN00206 216 AK-VLGKGLPFKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSKHDIELDNVSVLVLDEVDC-MLERGFR-DQVM 292 (518)
T ss_pred HH-HHhCCCCceEEEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHcCCccchheeEEEeecHHH-HhhcchH-HHHH
Confidence 64 344333333322222221 12345789999999998887643 4589999999999993 3333322 2233
Q ss_pred HHHhhcCCceEEEEeccCC--HHHHHHHhCCCCeEeecCcc-cc---eeeeecCCCchhHHHHHHHHHHHHhhcCCCCCE
Q 001722 460 KVVARRRDFKLIVTSATLN--AQKFSDFFGSVPIFHIPGRT-FP---VNTLYSKTPCEDYVEAAVKQAMTIHITSPPGDI 533 (1020)
Q Consensus 460 ~il~~r~~lklIlmSATld--~~~f~~~f~~~pvi~i~gr~-~p---V~i~y~~~~~~dyl~~av~~~l~i~~~~~~g~I 533 (1020)
.++...++.++|++|||+. .+.+...+...+++...+.. .+ +...+......+.. ..+..++... ....+++
T Consensus 293 ~i~~~l~~~q~l~~SATl~~~v~~l~~~~~~~~~~i~~~~~~~~~~~v~q~~~~~~~~~k~-~~l~~~l~~~-~~~~~~~ 370 (518)
T PLN00206 293 QIFQALSQPQVLLFSATVSPEVEKFASSLAKDIILISIGNPNRPNKAVKQLAIWVETKQKK-QKLFDILKSK-QHFKPPA 370 (518)
T ss_pred HHHHhCCCCcEEEEEeeCCHHHHHHHHHhCCCCEEEEeCCCCCCCcceeEEEEeccchhHH-HHHHHHHHhh-cccCCCE
Confidence 4444456789999999994 56777777665553332221 11 12221111111111 1122222211 1224689
Q ss_pred EEEcCCHHHHHHHHHHHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHHHhcCCCeEEEEecchhhccCCCCCee
Q 001722 534 LIFMTGQDEIEAACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAETSLTVDGIF 613 (1020)
Q Consensus 534 LVFl~g~~eie~l~~~L~e~l~~l~~~~~~~~~~l~vl~lhs~L~~~eq~~I~~~f~~g~rkVIVATniaEtGItIp~V~ 613 (1020)
|||++++..++.++..|... .++.+..+||+++.++|..+++.|+.|..+|||||+++++|||+|+|+
T Consensus 371 iVFv~s~~~a~~l~~~L~~~------------~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTdvl~rGiDip~v~ 438 (518)
T PLN00206 371 VVFVSSRLGADLLANAITVV------------TGLKALSIHGEKSMKERREVMKSFLVGEVPVIVATGVLGRGVDLLRVR 438 (518)
T ss_pred EEEcCCchhHHHHHHHHhhc------------cCcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEecHhhccCCcccCC
Confidence 99999999999888777532 257789999999999999999999999999999999999999999999
Q ss_pred EEEEcCCccceeccCCCCcccccccccCHHHHHHHhcccCCCC-CCEEEEccChhhH
Q 001722 614 YVIDTGYGKMKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTG-PGTCYRLYTESAY 669 (1020)
Q Consensus 614 ~VID~G~~K~~~yd~~~g~~~L~~~piS~as~~QRaGRAGR~g-~G~cyrLyt~~~~ 669 (1020)
+||+ || .|.|..+|+||+|||||.| .|.++.+++.++.
T Consensus 439 ~VI~--------~d----------~P~s~~~yihRiGRaGR~g~~G~ai~f~~~~~~ 477 (518)
T PLN00206 439 QVII--------FD----------MPNTIKEYIHQIGRASRMGEKGTAIVFVNEEDR 477 (518)
T ss_pred EEEE--------eC----------CCCCHHHHHHhccccccCCCCeEEEEEEchhHH
Confidence 9998 55 5899999999999999999 5999999998764
No 26
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=1e-34 Score=352.21 Aligned_cols=319 Identities=20% Similarity=0.232 Sum_probs=234.8
Q ss_pred HHHHHcCCCcHHHHHHHHHHHHhCCeEEEEecCCCchHHHHHHHHHHhccc--CCCEEEEEcccHHHHHHHHHHHHHHhc
Q 001722 315 LAEQRQYLPIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYT--TNGIVGCTQPRRVAAMSVAKRVSEEMD 392 (1020)
Q Consensus 315 l~~~R~~LPi~~~q~eil~~i~~~q~vII~gpTGSGKTtqi~q~Lle~~~~--~~~~Il~tqPrR~lA~qva~rva~e~~ 392 (1020)
.+.....-..+++|.+++..+.+++++|++||||||||+++.+++++.... ...+++|++|+|+||.|++..+....+
T Consensus 20 al~~~G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~~~~~~~LIL~PTreLa~Qv~~~l~~~~~ 99 (629)
T PRK11634 20 ALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPELKAPQILVLAPTRELAVQVAEAMTDFSK 99 (629)
T ss_pred HHHHCCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhccCCCeEEEEeCcHHHHHHHHHHHHHHHh
Confidence 344456777899999999999999999999999999999998888876432 235899999999999999998866544
Q ss_pred cccCCEEEEEEeeee------cCCCCccEEEEchHHHHHHHhcCC-CCCCccEEEEeCCCcCCCCccHHHHHHHHHHhhc
Q 001722 393 TELGDKVGYAIRFED------VTGPSTLIKYMTDGVLLRETLKDS-DLDKYRVIVMDEAHERSLSTDVLFGILKKVVARR 465 (1020)
Q Consensus 393 ~~lG~~VGy~ir~e~------~~s~~t~I~~~T~g~LLr~ll~d~-~L~~~s~IIIDEaHERs~~tD~ll~lLk~il~~r 465 (1020)
...+..+.......+ .......|+++|++.|+..+.... .++++++|||||||+. +...+...+...+....
T Consensus 100 ~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlDEAd~m-l~~gf~~di~~Il~~lp 178 (629)
T PRK11634 100 HMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEM-LRMGFIEDVETIMAQIP 178 (629)
T ss_pred hcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcchhhceEEEeccHHHH-hhcccHHHHHHHHHhCC
Confidence 333444433222221 123467899999999999887654 4899999999999963 33333333322222334
Q ss_pred CCceEEEEeccCC--HHHHHH-HhCCCCeEeecCccc---ceeeeecCCCchhHHHHHHHHHHHHhhcCCCCCEEEEcCC
Q 001722 466 RDFKLIVTSATLN--AQKFSD-FFGSVPIFHIPGRTF---PVNTLYSKTPCEDYVEAAVKQAMTIHITSPPGDILIFMTG 539 (1020)
Q Consensus 466 ~~lklIlmSATld--~~~f~~-~f~~~pvi~i~gr~~---pV~i~y~~~~~~dyl~~av~~~l~i~~~~~~g~ILVFl~g 539 (1020)
...+++++|||++ ...+.. |+.+...+.+..... .+...|......+.. .++...+ .......+||||++
T Consensus 179 ~~~q~llfSAT~p~~i~~i~~~~l~~~~~i~i~~~~~~~~~i~q~~~~v~~~~k~-~~L~~~L---~~~~~~~~IVF~~t 254 (629)
T PRK11634 179 EGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKN-EALVRFL---EAEDFDAAIIFVRT 254 (629)
T ss_pred CCCeEEEEEccCChhHHHHHHHHcCCCeEEEccCccccCCceEEEEEEechhhHH-HHHHHHH---HhcCCCCEEEEecc
Confidence 5789999999994 444544 444444444443321 122223222221222 2222222 22345789999999
Q ss_pred HHHHHHHHHHHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHHHhcCCCeEEEEecchhhccCCCCCeeEEEEcC
Q 001722 540 QDEIEAACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAETSLTVDGIFYVIDTG 619 (1020)
Q Consensus 540 ~~eie~l~~~L~e~l~~l~~~~~~~~~~l~vl~lhs~L~~~eq~~I~~~f~~g~rkVIVATniaEtGItIp~V~~VID~G 619 (1020)
+..++.++..|.+ .++.+..+||+|++.+|..+++.|..|..+|||||+++++|||||+|.+||+
T Consensus 255 k~~a~~l~~~L~~-------------~g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDip~V~~VI~-- 319 (629)
T PRK11634 255 KNATLEVAEALER-------------NGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVN-- 319 (629)
T ss_pred HHHHHHHHHHHHh-------------CCCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCcccCCEEEE--
Confidence 9999999988864 2578899999999999999999999999999999999999999999999998
Q ss_pred CccceeccCCCCcccccccccCHHHHHHHhcccCCCCC-CEEEEccChhhH
Q 001722 620 YGKMKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTGP-GTCYRLYTESAY 669 (1020)
Q Consensus 620 ~~K~~~yd~~~g~~~L~~~piS~as~~QRaGRAGR~g~-G~cyrLyt~~~~ 669 (1020)
|| .|.+..+|.||+|||||.|. |.|+.+++..+.
T Consensus 320 ------~d----------~P~~~e~yvqRiGRtGRaGr~G~ai~~v~~~e~ 354 (629)
T PRK11634 320 ------YD----------IPMDSESYVHRIGRTGRAGRAGRALLFVENRER 354 (629)
T ss_pred ------eC----------CCCCHHHHHHHhccccCCCCcceEEEEechHHH
Confidence 55 68999999999999999995 999999987653
No 27
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=9.2e-35 Score=350.40 Aligned_cols=313 Identities=18% Similarity=0.241 Sum_probs=227.6
Q ss_pred HHcCCCcHHHHHHHHHHHHhCCeEEEEecCCCchHHHHHHHHHHhccc---------CCCEEEEEcccHHHHHHHHHHHH
Q 001722 318 QRQYLPIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYT---------TNGIVGCTQPRRVAAMSVAKRVS 388 (1020)
Q Consensus 318 ~R~~LPi~~~q~eil~~i~~~q~vII~gpTGSGKTtqi~q~Lle~~~~---------~~~~Il~tqPrR~lA~qva~rva 388 (1020)
....--.+++|.++|+.+.+++++|+++|||||||+++..++++.... ...+++|+.|+|+||.|+++.+
T Consensus 26 ~~g~~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raLIl~PTreLa~Qi~~~~- 104 (572)
T PRK04537 26 SAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRALILAPTRELAIQIHKDA- 104 (572)
T ss_pred HCCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEEEEeCcHHHHHHHHHHH-
Confidence 334556789999999999999999999999999999998888775432 1358999999999999999987
Q ss_pred HHhccccCCEEEEEEeeee------cCCCCccEEEEchHHHHHHHhcC--CCCCCccEEEEeCCCcCCCCccHHHHHHHH
Q 001722 389 EEMDTELGDKVGYAIRFED------VTGPSTLIKYMTDGVLLRETLKD--SDLDKYRVIVMDEAHERSLSTDVLFGILKK 460 (1020)
Q Consensus 389 ~e~~~~lG~~VGy~ir~e~------~~s~~t~I~~~T~g~LLr~ll~d--~~L~~~s~IIIDEaHERs~~tD~ll~lLk~ 460 (1020)
..++..++..|+..+...+ ......+|+|+|++.|++.+... ..+..+++|||||||. .++..+.. -+..
T Consensus 105 ~~l~~~~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDEAh~-lld~gf~~-~i~~ 182 (572)
T PRK04537 105 VKFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADR-MFDLGFIK-DIRF 182 (572)
T ss_pred HHHhccCCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEecCHHH-HhhcchHH-HHHH
Confidence 4455555655554333222 12235689999999999987654 3478899999999994 23332322 2223
Q ss_pred HHhhc---CCceEEEEeccCCH--HHHH-HHhCCCCeEeecCcccc---eeeeecCCCchhHHHHHHHHHHHHhhcCCCC
Q 001722 461 VVARR---RDFKLIVTSATLNA--QKFS-DFFGSVPIFHIPGRTFP---VNTLYSKTPCEDYVEAAVKQAMTIHITSPPG 531 (1020)
Q Consensus 461 il~~r---~~lklIlmSATld~--~~f~-~~f~~~pvi~i~gr~~p---V~i~y~~~~~~dyl~~av~~~l~i~~~~~~g 531 (1020)
++... .+.++|++|||++. ..+. .++.+...+.+...... +...+......+ .+..++.+.......
T Consensus 183 il~~lp~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~----k~~~L~~ll~~~~~~ 258 (572)
T PRK04537 183 LLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIYFPADEE----KQTLLLGLLSRSEGA 258 (572)
T ss_pred HHHhcccccCceEEEEeCCccHHHHHHHHHHhcCCcEEEeccccccccceeEEEEecCHHH----HHHHHHHHHhcccCC
Confidence 33322 36799999999953 3333 44443323333222211 222222111111 122223333334567
Q ss_pred CEEEEcCCHHHHHHHHHHHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHHHhcCCCeEEEEecchhhccCCCCC
Q 001722 532 DILIFMTGQDEIEAACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAETSLTVDG 611 (1020)
Q Consensus 532 ~ILVFl~g~~eie~l~~~L~e~l~~l~~~~~~~~~~l~vl~lhs~L~~~eq~~I~~~f~~g~rkVIVATniaEtGItIp~ 611 (1020)
++||||+++..++.+++.|.+. ++.+..+||+|+..+|..+++.|.+|..+|||||+++++|||||+
T Consensus 259 k~LVF~nt~~~ae~l~~~L~~~-------------g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGIDip~ 325 (572)
T PRK04537 259 RTMVFVNTKAFVERVARTLERH-------------GYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDG 325 (572)
T ss_pred cEEEEeCCHHHHHHHHHHHHHc-------------CCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhcCCCccC
Confidence 8999999999999999888642 567999999999999999999999999999999999999999999
Q ss_pred eeEEEEcCCccceeccCCCCcccccccccCHHHHHHHhcccCCCC-CCEEEEccChhh
Q 001722 612 IFYVIDTGYGKMKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTG-PGTCYRLYTESA 668 (1020)
Q Consensus 612 V~~VID~G~~K~~~yd~~~g~~~L~~~piS~as~~QRaGRAGR~g-~G~cyrLyt~~~ 668 (1020)
|++||+ || .|.+..+|+||+|||||.| .|.|+.|+++.+
T Consensus 326 V~~VIn--------yd----------~P~s~~~yvqRiGRaGR~G~~G~ai~~~~~~~ 365 (572)
T PRK04537 326 VKYVYN--------YD----------LPFDAEDYVHRIGRTARLGEEGDAISFACERY 365 (572)
T ss_pred CCEEEE--------cC----------CCCCHHHHhhhhcccccCCCCceEEEEecHHH
Confidence 999998 55 6899999999999999999 599999998754
No 28
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.1e-34 Score=344.11 Aligned_cols=319 Identities=20% Similarity=0.253 Sum_probs=228.6
Q ss_pred HHHHHHHcCCCcHHHHHHHHHHHHhCCeEEEEecCCCchHHHHHHHHHHhcccC---------CCEEEEEcccHHHHHHH
Q 001722 313 KTLAEQRQYLPIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTT---------NGIVGCTQPRRVAAMSV 383 (1020)
Q Consensus 313 ~~l~~~R~~LPi~~~q~eil~~i~~~q~vII~gpTGSGKTtqi~q~Lle~~~~~---------~~~Il~tqPrR~lA~qv 383 (1020)
...+.....--.+++|.++++.+.+++++|+++|||||||+++..++++..... ..+++++.|+++||.|+
T Consensus 99 ~~~l~~~g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~aLil~PtreLa~Q~ 178 (475)
T PRK01297 99 MHAIHDLGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRALIIAPTRELVVQI 178 (475)
T ss_pred HHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCceEEEEeCcHHHHHHH
Confidence 344444566668999999999999999999999999999999988888764432 35789999999999999
Q ss_pred HHHHHHHhccccCCEEEEEEeeee-------cCCCCccEEEEchHHHHHHHhc-CCCCCCccEEEEeCCCcCCCCccHHH
Q 001722 384 AKRVSEEMDTELGDKVGYAIRFED-------VTGPSTLIKYMTDGVLLRETLK-DSDLDKYRVIVMDEAHERSLSTDVLF 455 (1020)
Q Consensus 384 a~rva~e~~~~lG~~VGy~ir~e~-------~~s~~t~I~~~T~g~LLr~ll~-d~~L~~~s~IIIDEaHERs~~tD~ll 455 (1020)
++.+.. +....|..+.-.+...+ ......+|+++|+++|+..+.. ...+.++++|||||||. -.+..+ .
T Consensus 179 ~~~~~~-l~~~~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lViDEah~-l~~~~~-~ 255 (475)
T PRK01297 179 AKDAAA-LTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADR-MLDMGF-I 255 (475)
T ss_pred HHHHHH-hhccCCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcCCcccccCceEEechHHH-HHhccc-H
Confidence 988854 33334444432222111 1234578999999999876543 34689999999999994 222222 2
Q ss_pred HHHHHHHhhc---CCceEEEEeccCC--HHHHHHHhCCCCe-EeecCccc---ceeeeecCCCchhHHHHHHHHHHHHhh
Q 001722 456 GILKKVVARR---RDFKLIVTSATLN--AQKFSDFFGSVPI-FHIPGRTF---PVNTLYSKTPCEDYVEAAVKQAMTIHI 526 (1020)
Q Consensus 456 ~lLk~il~~r---~~lklIlmSATld--~~~f~~~f~~~pv-i~i~gr~~---pV~i~y~~~~~~dyl~~av~~~l~i~~ 526 (1020)
..++.++... .+.++|++|||+. ...+...|...|+ +.+..... .+..++......+.. ..+..+..
T Consensus 256 ~~l~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~k~----~~l~~ll~ 331 (475)
T PRK01297 256 PQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPENVASDTVEQHVYAVAGSDKY----KLLYNLVT 331 (475)
T ss_pred HHHHHHHHhCCCCCCceEEEEEeecCHHHHHHHHHhccCCEEEEeccCcCCCCcccEEEEEecchhHH----HHHHHHHH
Confidence 2334444332 3568999999984 4455554444443 33322211 122222111111111 11112222
Q ss_pred cCCCCCEEEEcCCHHHHHHHHHHHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHHHhcCCCeEEEEecchhhcc
Q 001722 527 TSPPGDILIFMTGQDEIEAACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAETS 606 (1020)
Q Consensus 527 ~~~~g~ILVFl~g~~eie~l~~~L~e~l~~l~~~~~~~~~~l~vl~lhs~L~~~eq~~I~~~f~~g~rkVIVATniaEtG 606 (1020)
....+++||||+++..++.++..|.+ .++.+..+||+++.++|..+++.|.+|.++|||||+++++|
T Consensus 332 ~~~~~~~IVF~~s~~~~~~l~~~L~~-------------~~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~G 398 (475)
T PRK01297 332 QNPWERVMVFANRKDEVRRIEERLVK-------------DGINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRG 398 (475)
T ss_pred hcCCCeEEEEeCCHHHHHHHHHHHHH-------------cCCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEccccccC
Confidence 23456899999999999999887753 25678899999999999999999999999999999999999
Q ss_pred CCCCCeeEEEEcCCccceeccCCCCcccccccccCHHHHHHHhcccCCCC-CCEEEEccChhhH
Q 001722 607 LTVDGIFYVIDTGYGKMKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTG-PGTCYRLYTESAY 669 (1020)
Q Consensus 607 ItIp~V~~VID~G~~K~~~yd~~~g~~~L~~~piS~as~~QRaGRAGR~g-~G~cyrLyt~~~~ 669 (1020)
||||+|++||+.| .|.|.++|.||+|||||.| .|.++.++++.+.
T Consensus 399 IDi~~v~~VI~~~------------------~P~s~~~y~Qr~GRaGR~g~~g~~i~~~~~~d~ 444 (475)
T PRK01297 399 IHIDGISHVINFT------------------LPEDPDDYVHRIGRTGRAGASGVSISFAGEDDA 444 (475)
T ss_pred CcccCCCEEEEeC------------------CCCCHHHHHHhhCccCCCCCCceEEEEecHHHH
Confidence 9999999999955 5899999999999999999 5999999997653
No 29
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=1.7e-34 Score=334.74 Aligned_cols=314 Identities=16% Similarity=0.198 Sum_probs=225.2
Q ss_pred cCCCcHHHHHHHHHHHHhCCeEEEEecCCCchHHHHHHHHHHhccc--CCCEEEEEcccHHHHHHHHHHHHHHhccccCC
Q 001722 320 QYLPIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYT--TNGIVGCTQPRRVAAMSVAKRVSEEMDTELGD 397 (1020)
Q Consensus 320 ~~LPi~~~q~eil~~i~~~q~vII~gpTGSGKTtqi~q~Lle~~~~--~~~~Il~tqPrR~lA~qva~rva~e~~~~lG~ 397 (1020)
..--.+++|.++++.+.++++++++||||||||+++..+++..... .+.+++++.|+++||.|+.+.+.. ++..++.
T Consensus 47 ~~~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~-~~~~~~~ 125 (401)
T PTZ00424 47 GFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDYDLNACQALILAPTRELAQQIQKVVLA-LGDYLKV 125 (401)
T ss_pred CCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcCCCCCceEEEECCCHHHHHHHHHHHHH-HhhhcCc
Confidence 3344788999999999999999999999999999988877765422 345899999999999999877644 3333333
Q ss_pred EEEEEEeee------ecCCCCccEEEEchHHHHHHHhcCC-CCCCccEEEEeCCCcCCCCccHHHHHHHHHHhhcCCceE
Q 001722 398 KVGYAIRFE------DVTGPSTLIKYMTDGVLLRETLKDS-DLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKL 470 (1020)
Q Consensus 398 ~VGy~ir~e------~~~s~~t~I~~~T~g~LLr~ll~d~-~L~~~s~IIIDEaHERs~~tD~ll~lLk~il~~r~~lkl 470 (1020)
.++..+... ........|+++|++.|...+.... .+.++++|||||||.- ....+...+...+....+++++
T Consensus 126 ~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDEah~~-~~~~~~~~~~~i~~~~~~~~~~ 204 (401)
T PTZ00424 126 RCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILDEADEM-LSRGFKGQIYDVFKKLPPDVQV 204 (401)
T ss_pred eEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhCCcccccccEEEEecHHHH-HhcchHHHHHHHHhhCCCCcEE
Confidence 332221111 0122346899999999998876543 5889999999999942 1222221122222234567999
Q ss_pred EEEeccCCH--HHHHHHhCCCCe-EeecCccc---ceeeeecCCCchhHHHHHHHHHHHHhhcCCCCCEEEEcCCHHHHH
Q 001722 471 IVTSATLNA--QKFSDFFGSVPI-FHIPGRTF---PVNTLYSKTPCEDYVEAAVKQAMTIHITSPPGDILIFMTGQDEIE 544 (1020)
Q Consensus 471 IlmSATld~--~~f~~~f~~~pv-i~i~gr~~---pV~i~y~~~~~~dyl~~av~~~l~i~~~~~~g~ILVFl~g~~eie 544 (1020)
|++|||+.. ..+...|...|. +.+..... .+..+|......++....+.. +........+||||+++..++
T Consensus 205 i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~ivF~~t~~~~~ 281 (401)
T PTZ00424 205 ALFSATMPNEILELTTKFMRDPKRILVKKDELTLEGIRQFYVAVEKEEWKFDTLCD---LYETLTITQAIIYCNTRRKVD 281 (401)
T ss_pred EEEEecCCHHHHHHHHHHcCCCEEEEeCCCCcccCCceEEEEecChHHHHHHHHHH---HHHhcCCCeEEEEecCcHHHH
Confidence 999999943 334444433333 23332211 123333333333333222222 222334578999999999999
Q ss_pred HHHHHHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHHHhcCCCeEEEEecchhhccCCCCCeeEEEEcCCccce
Q 001722 545 AACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAETSLTVDGIFYVIDTGYGKMK 624 (1020)
Q Consensus 545 ~l~~~L~e~l~~l~~~~~~~~~~l~vl~lhs~L~~~eq~~I~~~f~~g~rkVIVATniaEtGItIp~V~~VID~G~~K~~ 624 (1020)
.++..|.+. ++.+..+||+|+.++|..+++.|++|.++|||||+++++|||+|++++||+.
T Consensus 282 ~l~~~l~~~-------------~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~v~~VI~~------ 342 (401)
T PTZ00424 282 YLTKKMHER-------------DFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQVSLVINY------ 342 (401)
T ss_pred HHHHHHHHC-------------CCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccCCcCcccCCEEEEE------
Confidence 998877542 5678999999999999999999999999999999999999999999999984
Q ss_pred eccCCCCcccccccccCHHHHHHHhcccCCCC-CCEEEEccChhhH
Q 001722 625 VYNPKMGMDALQVFPVSRAAADQRAGRAGRTG-PGTCYRLYTESAY 669 (1020)
Q Consensus 625 ~yd~~~g~~~L~~~piS~as~~QRaGRAGR~g-~G~cyrLyt~~~~ 669 (1020)
| .|.|..+|.||+|||||.| .|.||.|+++.+.
T Consensus 343 --~----------~p~s~~~y~qr~GRagR~g~~G~~i~l~~~~~~ 376 (401)
T PTZ00424 343 --D----------LPASPENYIHRIGRSGRFGRKGVAINFVTPDDI 376 (401)
T ss_pred --C----------CCCCHHHEeecccccccCCCCceEEEEEcHHHH
Confidence 4 5889999999999999998 5999999998765
No 30
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=4.8e-34 Score=352.51 Aligned_cols=325 Identities=17% Similarity=0.182 Sum_probs=233.3
Q ss_pred HHHHHHHcCCCcHHHHHHHHHHHHhCCeEEEEecCCCchHHHHHHHHHHhcccC-CCEEEEEcccHHHHHHHHHHHHHHh
Q 001722 313 KTLAEQRQYLPIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTT-NGIVGCTQPRRVAAMSVAKRVSEEM 391 (1020)
Q Consensus 313 ~~l~~~R~~LPi~~~q~eil~~i~~~q~vII~gpTGSGKTtqi~q~Lle~~~~~-~~~Il~tqPrR~lA~qva~rva~e~ 391 (1020)
.+.++.+..-..|++|.++++.+.+++++|+++|||||||.++..++++..... +.+++++.|+|+||.|+...+.+.
T Consensus 26 ~~~L~~~g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~~~~~~aL~l~PtraLa~q~~~~l~~l- 104 (742)
T TIGR03817 26 VAALEAAGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALADDPRATALYLAPTKALAADQLRAVREL- 104 (742)
T ss_pred HHHHHHcCCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhhCCCcEEEEEcChHHHHHHHHHHHHHh-
Confidence 344555666679999999999999999999999999999999999888876443 458999999999999999998553
Q ss_pred ccccCCEEEEEEeeee------cCCCCccEEEEchHHHHHHHhcC-----CCCCCccEEEEeCCCc-CCC---CccHHHH
Q 001722 392 DTELGDKVGYAIRFED------VTGPSTLIKYMTDGVLLRETLKD-----SDLDKYRVIVMDEAHE-RSL---STDVLFG 456 (1020)
Q Consensus 392 ~~~lG~~VGy~ir~e~------~~s~~t~I~~~T~g~LLr~ll~d-----~~L~~~s~IIIDEaHE-Rs~---~tD~ll~ 456 (1020)
+ ..+..++. ..++. ....+.+|+++||++|...++.. ..++++++|||||||. ++. +...++.
T Consensus 105 ~-~~~i~v~~-~~Gdt~~~~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~~~g~fg~~~~~il~ 182 (742)
T TIGR03817 105 T-LRGVRPAT-YDGDTPTEERRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHSYRGVFGSHVALVLR 182 (742)
T ss_pred c-cCCeEEEE-EeCCCCHHHHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhhccCccHHHHHHHHH
Confidence 3 22323321 11111 11235789999999997655432 2378999999999996 222 2223344
Q ss_pred HHHHHHhh-cCCceEEEEeccC-CHHHHHHHhCCCCeEeecCcccc---eeeeecCCCc------------hhHHHHHHH
Q 001722 457 ILKKVVAR-RRDFKLIVTSATL-NAQKFSDFFGSVPIFHIPGRTFP---VNTLYSKTPC------------EDYVEAAVK 519 (1020)
Q Consensus 457 lLk~il~~-r~~lklIlmSATl-d~~~f~~~f~~~pvi~i~gr~~p---V~i~y~~~~~------------~dyl~~av~ 519 (1020)
.|+.+... ..+.++|++|||+ |...+.+++.+.|+..+....-| ....+...+. .........
T Consensus 183 rL~ri~~~~g~~~q~i~~SATi~n~~~~~~~l~g~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~r~~~~~~~~~ 262 (742)
T TIGR03817 183 RLRRLCARYGASPVFVLASATTADPAAAASRLIGAPVVAVTEDGSPRGARTVALWEPPLTELTGENGAPVRRSASAEAAD 262 (742)
T ss_pred HHHHHHHhcCCCCEEEEEecCCCCHHHHHHHHcCCCeEEECCCCCCcCceEEEEecCCccccccccccccccchHHHHHH
Confidence 44444432 3468999999999 67777766666666555432222 2222111110 000111111
Q ss_pred HHHHHhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHHHhcCCCeEEEEe
Q 001722 520 QAMTIHITSPPGDILIFMTGQDEIEAACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVA 599 (1020)
Q Consensus 520 ~~l~i~~~~~~g~ILVFl~g~~eie~l~~~L~e~l~~l~~~~~~~~~~l~vl~lhs~L~~~eq~~I~~~f~~g~rkVIVA 599 (1020)
.+..+ .....++||||++++.++.++..|.+.+.... ......+..+||++++++|.++++.|++|..+||||
T Consensus 263 ~l~~l--~~~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~-----~~l~~~v~~~hgg~~~~eR~~ie~~f~~G~i~vLVa 335 (742)
T TIGR03817 263 LLADL--VAEGARTLTFVRSRRGAELVAAIARRLLGEVD-----PDLAERVAAYRAGYLPEDRRELERALRDGELLGVAT 335 (742)
T ss_pred HHHHH--HHCCCCEEEEcCCHHHHHHHHHHHHHHHHhhc-----cccccchhheecCCCHHHHHHHHHHHHcCCceEEEE
Confidence 11111 12357899999999999999998877554321 112456889999999999999999999999999999
Q ss_pred cchhhccCCCCCeeEEEEcCCccceeccCCCCcccccccccCHHHHHHHhcccCCCCC-CEEEEccC
Q 001722 600 TNIAETSLTVDGIFYVIDTGYGKMKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTGP-GTCYRLYT 665 (1020)
Q Consensus 600 TniaEtGItIp~V~~VID~G~~K~~~yd~~~g~~~L~~~piS~as~~QRaGRAGR~g~-G~cyrLyt 665 (1020)
||++|+||||++|++||+.| .|.+.++|.||+|||||.|. |.++.+.+
T Consensus 336 Td~lerGIDI~~vd~VI~~~------------------~P~s~~~y~qRiGRaGR~G~~g~ai~v~~ 384 (742)
T TIGR03817 336 TNALELGVDISGLDAVVIAG------------------FPGTRASLWQQAGRAGRRGQGALVVLVAR 384 (742)
T ss_pred CchHhccCCcccccEEEEeC------------------CCCCHHHHHHhccccCCCCCCcEEEEEeC
Confidence 99999999999999999965 59999999999999999995 99998886
No 31
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.5e-34 Score=339.61 Aligned_cols=315 Identities=22% Similarity=0.321 Sum_probs=241.9
Q ss_pred HHHcCCCcHHHHHHHHHHHHhCCeEEEEecCCCchHHHHHHHHHHhcc--cCCC-E-EEEEcccHHHHHHHHHHHHHHhc
Q 001722 317 EQRQYLPIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGY--TTNG-I-VGCTQPRRVAAMSVAKRVSEEMD 392 (1020)
Q Consensus 317 ~~R~~LPi~~~q~eil~~i~~~q~vII~gpTGSGKTtqi~q~Lle~~~--~~~~-~-Il~tqPrR~lA~qva~rva~e~~ 392 (1020)
.....--..++|...++.+..++++++.++||||||.++..++++... .... . ++++.|||+||.|++..+.. ++
T Consensus 45 ~~~gf~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~~~~~aLil~PTRELA~Qi~~~~~~-~~ 123 (513)
T COG0513 45 KDLGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVSALILAPTRELAVQIAEELRK-LG 123 (513)
T ss_pred HHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhcccccCCCceEEECCCHHHHHHHHHHHHH-HH
Confidence 335677788999999999999999999999999999999999998854 2222 2 89999999999999988744 44
Q ss_pred ccc-CCEEEEEEeeee------cCCCCccEEEEchHHHHHHHhcC-CCCCCccEEEEeCCCcCCCCccHHHHHHHHHHhh
Q 001722 393 TEL-GDKVGYAIRFED------VTGPSTLIKYMTDGVLLRETLKD-SDLDKYRVIVMDEAHERSLSTDVLFGILKKVVAR 464 (1020)
Q Consensus 393 ~~l-G~~VGy~ir~e~------~~s~~t~I~~~T~g~LLr~ll~d-~~L~~~s~IIIDEaHERs~~tD~ll~lLk~il~~ 464 (1020)
... +..+...+.+.+ ......+|+|+|||.|+.++... -.+.++.++|+|||+ |.++..|.-.+-+.+-..
T Consensus 124 ~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDEAD-rmLd~Gf~~~i~~I~~~~ 202 (513)
T COG0513 124 KNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRGKLDLSGVETLVLDEAD-RMLDMGFIDDIEKILKAL 202 (513)
T ss_pred hhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcCCcchhhcCEEEeccHh-hhhcCCCHHHHHHHHHhC
Confidence 333 333333333222 11225899999999999988765 468999999999999 788887766666665555
Q ss_pred cCCceEEEEeccCC--HHHHHHHhCCCCe-EeecCc-----ccceeeeecCCCchhHHHHHHHHHHHHhhcCCCCCEEEE
Q 001722 465 RRDFKLIVTSATLN--AQKFSDFFGSVPI-FHIPGR-----TFPVNTLYSKTPCEDYVEAAVKQAMTIHITSPPGDILIF 536 (1020)
Q Consensus 465 r~~lklIlmSATld--~~~f~~~f~~~pv-i~i~gr-----~~pV~i~y~~~~~~dyl~~av~~~l~i~~~~~~g~ILVF 536 (1020)
.++.+++++|||++ ...++.-+...|+ +.+.-. .-.++.+|......+ ..+..+..+......+.+|||
T Consensus 203 p~~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~---~k~~~L~~ll~~~~~~~~IVF 279 (513)
T COG0513 203 PPDRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEE---EKLELLLKLLKDEDEGRVIVF 279 (513)
T ss_pred CcccEEEEEecCCCHHHHHHHHHHccCCcEEEEccccccccccCceEEEEEeCCHH---HHHHHHHHHHhcCCCCeEEEE
Confidence 56899999999995 4444444444443 444311 123445554444333 122223333333345679999
Q ss_pred cCCHHHHHHHHHHHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHHHhcCCCeEEEEecchhhccCCCCCeeEEE
Q 001722 537 MTGQDEIEAACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAETSLTVDGIFYVI 616 (1020)
Q Consensus 537 l~g~~eie~l~~~L~e~l~~l~~~~~~~~~~l~vl~lhs~L~~~eq~~I~~~f~~g~rkVIVATniaEtGItIp~V~~VI 616 (1020)
|+++..++.++..|... ++.+..+||+|++++|.++++.|.+|..+|+|||++|++|||||+|.+||
T Consensus 280 ~~tk~~~~~l~~~l~~~-------------g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~v~~Vi 346 (513)
T COG0513 280 VRTKRLVEELAESLRKR-------------GFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGLDIPDVSHVI 346 (513)
T ss_pred eCcHHHHHHHHHHHHHC-------------CCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhccCCccccceeE
Confidence 99999999998887652 68899999999999999999999999999999999999999999999999
Q ss_pred EcCCccceeccCCCCcccccccccCHHHHHHHhcccCCCCC-CEEEEccChh
Q 001722 617 DTGYGKMKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTGP-GTCYRLYTES 667 (1020)
Q Consensus 617 D~G~~K~~~yd~~~g~~~L~~~piS~as~~QRaGRAGR~g~-G~cyrLyt~~ 667 (1020)
+ || .|.+...|+||+||+||.|. |.++.|+++.
T Consensus 347 n--------yD----------~p~~~e~yvHRiGRTgRaG~~G~ai~fv~~~ 380 (513)
T COG0513 347 N--------YD----------LPLDPEDYVHRIGRTGRAGRKGVAISFVTEE 380 (513)
T ss_pred E--------cc----------CCCCHHHheeccCccccCCCCCeEEEEeCcH
Confidence 9 77 79999999999999999995 9999999964
No 32
>COG1204 Superfamily II helicase [General function prediction only]
Probab=100.00 E-value=9.6e-33 Score=338.31 Aligned_cols=436 Identities=24% Similarity=0.266 Sum_probs=290.1
Q ss_pred CcHHHHHHHHHHH-HhCCeEEEEecCCCchHHHHHHHHHHhcccCCCEEEEEcccHHHHHHHHHHHHHHhccccCCEEEE
Q 001722 323 PIFSVRDELLQVI-RENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELGDKVGY 401 (1020)
Q Consensus 323 Pi~~~q~eil~~i-~~~q~vII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~lA~qva~rva~e~~~~lG~~VGy 401 (1020)
-+++.|++.+... .+++|+||++|||||||..+...++......++++++++|+|+||.++++.++ .-..+|..|+-
T Consensus 31 el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~~~k~vYivPlkALa~Ek~~~~~--~~~~~GirV~~ 108 (766)
T COG1204 31 ELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEGGGKVVYIVPLKALAEEKYEEFS--RLEELGIRVGI 108 (766)
T ss_pred HhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhcCCcEEEEeChHHHHHHHHHHhh--hHHhcCCEEEE
Confidence 3555666655554 45699999999999999999999988877667899999999999999999997 12345666665
Q ss_pred EEeeeecCC---CCccEEEEchHHHHHHHhcCC-CCCCccEEEEeCCCc-----CCCCccHHHHHHHHHHhhcCCceEEE
Q 001722 402 AIRFEDVTG---PSTLIKYMTDGVLLRETLKDS-DLDKYRVIVMDEAHE-----RSLSTDVLFGILKKVVARRRDFKLIV 472 (1020)
Q Consensus 402 ~ir~e~~~s---~~t~I~~~T~g~LLr~ll~d~-~L~~~s~IIIDEaHE-----Rs~~tD~ll~lLk~il~~r~~lklIl 472 (1020)
..+..+... ..+.|+++|++.+-..+...+ .+..+++|||||+|- |+...+. ++.+.....+.++||+
T Consensus 109 ~TgD~~~~~~~l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l~d~~RG~~lE~---iv~r~~~~~~~~rivg 185 (766)
T COG1204 109 STGDYDLDDERLARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLLGDRTRGPVLES---IVARMRRLNELIRIVG 185 (766)
T ss_pred ecCCcccchhhhccCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeeecCCcccCceehh---HHHHHHhhCcceEEEE
Confidence 444333222 578999999998765554443 478999999999992 5555444 4445545566799999
Q ss_pred EeccC-CHHHHHHHhCCCCeEeecCcccc--------eeeeecCCCch--h--HHHHHHHHHHHHhhcCCCCCEEEEcCC
Q 001722 473 TSATL-NAQKFSDFFGSVPIFHIPGRTFP--------VNTLYSKTPCE--D--YVEAAVKQAMTIHITSPPGDILIFMTG 539 (1020)
Q Consensus 473 mSATl-d~~~f~~~f~~~pvi~i~gr~~p--------V~i~y~~~~~~--d--yl~~av~~~l~i~~~~~~g~ILVFl~g 539 (1020)
+|||+ |+..+++|++..++ ....+..| ..+++...... . .-..++..++. ....+|++|||+++
T Consensus 186 LSATlpN~~evA~wL~a~~~-~~~~rp~~l~~~v~~~~~~~~~~~~~k~~~~~~~~~~~~~v~~--~~~~~~qvLvFv~s 262 (766)
T COG1204 186 LSATLPNAEEVADWLNAKLV-ESDWRPVPLRRGVPYVGAFLGADGKKKTWPLLIDNLALELVLE--SLAEGGQVLVFVHS 262 (766)
T ss_pred EeeecCCHHHHHHHhCCccc-ccCCCCcccccCCccceEEEEecCccccccccchHHHHHHHHH--HHhcCCeEEEEEec
Confidence 99999 99999999986554 22222111 11111111110 0 11122222222 22457899999999
Q ss_pred HHHHHHHHHHHHHHHHHhhccc--------cC----------------CCCCeEEEEecCCCCHHHHHHHHHHhcCCCeE
Q 001722 540 QDEIEAACFALKERMEQLISST--------TR----------------EVPELLILPIYSQLPADLQAKIFEKAKEGTRK 595 (1020)
Q Consensus 540 ~~eie~l~~~L~e~l~~l~~~~--------~~----------------~~~~l~vl~lhs~L~~~eq~~I~~~f~~g~rk 595 (1020)
+..+..++..|...+....... .. ..-...+..||++|+.++|..+.+.|+.|.++
T Consensus 263 R~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHhAGL~~~~R~~vE~~Fr~g~ik 342 (766)
T COG1204 263 RKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHHAGLPREDRQLVEDAFRKGKIK 342 (766)
T ss_pred CchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCccccccCCCHHHHHHHHHHHhcCCce
Confidence 9999999999986443321110 00 01123478899999999999999999999999
Q ss_pred EEEecchhhccCCCCCeeEEEEcCCccceeccCCCCcccccccccCHHHHHHHhcccCCCC---CCEEEEcc-C--hhhH
Q 001722 596 CIVATNIAETSLTVDGIFYVIDTGYGKMKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTG---PGTCYRLY-T--ESAY 669 (1020)
Q Consensus 596 VIVATniaEtGItIp~V~~VID~G~~K~~~yd~~~g~~~L~~~piS~as~~QRaGRAGR~g---~G~cyrLy-t--~~~~ 669 (1020)
|||||++++.|+|.|.-++|| ....+||+..| ..+++.-.+.|++|||||.| -|..+.+. + +..+
T Consensus 343 Vlv~TpTLA~GVNLPA~~VII----k~~~~y~~~~g-----~~~i~~~dv~QM~GRAGRPg~d~~G~~~i~~~~~~~~~~ 413 (766)
T COG1204 343 VLVSTPTLAAGVNLPARTVII----KDTRRYDPKGG-----IVDIPVLDVLQMAGRAGRPGYDDYGEAIILATSHDELEY 413 (766)
T ss_pred EEEechHHhhhcCCcceEEEE----eeeEEEcCCCC-----eEECchhhHhhccCcCCCCCcCCCCcEEEEecCccchhH
Confidence 999999999999999888888 34677887444 35899999999999999998 25555554 2 2233
Q ss_pred hhccCCCCcchhcccchh------HHHHHHhhcccC----cccCC---CCCCC------CChhhHHHHHHHHHHhc-Ccc
Q 001722 670 LNEMLPSPVPEIQRTNLG------NVVLLLKSLKID----NLLDF---DFMDP------PPQENILNSMYQLWVLG-ALN 729 (1020)
Q Consensus 670 ~~~m~~~~~PEI~r~~L~------~vvL~lk~lgi~----~~~~f---~~~dp------P~~~~i~~al~~L~~lg-aLd 729 (1020)
.........||...+.|. ..++.+.+.+-. .+..| -|..| -....+..++..|...+ .++
T Consensus 414 ~~~~~~~~~~e~~~s~l~~~~~~~~~l~~v~~~~~~v~~~~~~~f~~~t~~~~~~~~~~~~~~~i~~~~~~L~~~~~~~~ 493 (766)
T COG1204 414 LAELYIQSEPEPIESKLGDELNLRTFLLGVISVGDAVSWLELTDFYERTFYNPQTYGEGMLREEILASLRYLEENGLILD 493 (766)
T ss_pred HHHHhhccCcchHHHhhcccccchheEEEEEeccchhhHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHHHhccceee
Confidence 334445566665322222 112222221100 00000 01111 13456778899998886 555
Q ss_pred CC---CCccHHHHHhhcCCCChHHHHHHhhhhccCcH-HHHHHHHHHhCC
Q 001722 730 NV---GALTDLGWKMVEFPLDPPLAKMLLMGEQLGCL-DEVLTIVSMLSV 775 (1020)
Q Consensus 730 ~~---g~LT~lG~~ma~lPldp~lak~ll~~~~~~c~-~e~l~I~a~ls~ 775 (1020)
.. -..|.+|+.++.+-++|..++.+......--. ...+.+-.+++.
T Consensus 494 ~~~~~~~ate~g~~~s~~yi~~~sa~~~~~~l~~~~~~~~~~~~l~~is~ 543 (766)
T COG1204 494 ADWEALHATELGKLVSRLYIDPESAKIFRDLLAELALEPTEIGLLYLISL 543 (766)
T ss_pred ccccccchhHHHHHhhhccCCHHHHHHHHHHHHHhccccchHHHhhhhhc
Confidence 43 35789999999999999999999876543222 133344444444
No 33
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=2.4e-33 Score=332.06 Aligned_cols=302 Identities=17% Similarity=0.185 Sum_probs=215.5
Q ss_pred cHHHHHHHHHHHHhCCeEEEEecCCCchHHHHHHHHHHhcccCCCEEEEEcccHHHHHHHHHHHHHHhccccCCEEEEEE
Q 001722 324 IFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELGDKVGYAI 403 (1020)
Q Consensus 324 i~~~q~eil~~i~~~q~vII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~lA~qva~rva~e~~~~lG~~VGy~i 403 (1020)
..++|.++++++.+++++++++|||||||+++..+++.. ++.++|+.|+++|+.++..++.. +| ..+.+..
T Consensus 12 ~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~~----~~~~lVi~P~~~L~~dq~~~l~~-~g----i~~~~l~ 82 (470)
T TIGR00614 12 FRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALCS----DGITLVISPLISLMEDQVLQLKA-SG----IPATFLN 82 (470)
T ss_pred CCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHHc----CCcEEEEecHHHHHHHHHHHHHH-cC----CcEEEEe
Confidence 567899999999999999999999999999876666542 46788999999999999888843 33 3332211
Q ss_pred eee----------ecCCCCccEEEEchHHHHHHH--hcCC-CCCCccEEEEeCCCcCCCCc-cH--HHHHHHHHHhhcCC
Q 001722 404 RFE----------DVTGPSTLIKYMTDGVLLRET--LKDS-DLDKYRVIVMDEAHERSLST-DV--LFGILKKVVARRRD 467 (1020)
Q Consensus 404 r~e----------~~~s~~t~I~~~T~g~LLr~l--l~d~-~L~~~s~IIIDEaHERs~~t-D~--ll~lLk~il~~r~~ 467 (1020)
... .......+|+|+||+.+.... .... .+.++++|||||||..+-+. ++ .+..+..+....|+
T Consensus 83 ~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~ 162 (470)
T TIGR00614 83 SSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDFRPDYKALGSLKQKFPN 162 (470)
T ss_pred CCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccccHHHHHHHHHHHHHcCC
Confidence 111 112345789999999875321 1111 46789999999999644322 22 22234445556789
Q ss_pred ceEEEEeccCCHH---HHHHHhC-CCCeEeecCcccceeeeecC-CCchhHHHHHHHHHHHHhhcCCCCCEEEEcCCHHH
Q 001722 468 FKLIVTSATLNAQ---KFSDFFG-SVPIFHIPGRTFPVNTLYSK-TPCEDYVEAAVKQAMTIHITSPPGDILIFMTGQDE 542 (1020)
Q Consensus 468 lklIlmSATld~~---~f~~~f~-~~pvi~i~gr~~pV~i~y~~-~~~~dyl~~av~~~l~i~~~~~~g~ILVFl~g~~e 542 (1020)
.+++++|||++.. .+..+++ ..|.+...+...|. +.|.. ....+.+...+..+.. ..+...+||||+++++
T Consensus 163 ~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~s~~r~n-l~~~v~~~~~~~~~~l~~~l~~---~~~~~~~IIF~~s~~~ 238 (470)
T TIGR00614 163 VPIMALTATASPSVREDILRQLNLKNPQIFCTSFDRPN-LYYEVRRKTPKILEDLLRFIRK---EFKGKSGIIYCPSRKK 238 (470)
T ss_pred CceEEEecCCCHHHHHHHHHHcCCCCCcEEeCCCCCCC-cEEEEEeCCccHHHHHHHHHHH---hcCCCceEEEECcHHH
Confidence 9999999999654 3444443 23333333222221 11211 1111222222221111 1234456999999999
Q ss_pred HHHHHHHHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHHHhcCCCeEEEEecchhhccCCCCCeeEEEEcCCcc
Q 001722 543 IEAACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAETSLTVDGIFYVIDTGYGK 622 (1020)
Q Consensus 543 ie~l~~~L~e~l~~l~~~~~~~~~~l~vl~lhs~L~~~eq~~I~~~f~~g~rkVIVATniaEtGItIp~V~~VID~G~~K 622 (1020)
++.++..|.+. ++.+.++||+|+.++|..+++.|..|..+|||||+++++|||+|+|++||+.+
T Consensus 239 ~e~la~~L~~~-------------g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI~~~--- 302 (470)
T TIGR00614 239 SEQVTASLQNL-------------GIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVIHYS--- 302 (470)
T ss_pred HHHHHHHHHhc-------------CCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceEEEEeC---
Confidence 99999988642 67789999999999999999999999999999999999999999999999844
Q ss_pred ceeccCCCCcccccccccCHHHHHHHhcccCCCC-CCEEEEccChhhH
Q 001722 623 MKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTG-PGTCYRLYTESAY 669 (1020)
Q Consensus 623 ~~~yd~~~g~~~L~~~piS~as~~QRaGRAGR~g-~G~cyrLyt~~~~ 669 (1020)
.|.|.++|.||+|||||.| +|.|+.+|+..+.
T Consensus 303 ---------------~P~s~~~y~Qr~GRaGR~G~~~~~~~~~~~~d~ 335 (470)
T TIGR00614 303 ---------------LPKSMESYYQESGRAGRDGLPSECHLFYAPADI 335 (470)
T ss_pred ---------------CCCCHHHHHhhhcCcCCCCCCceEEEEechhHH
Confidence 5889999999999999999 6999999998765
No 34
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=100.00 E-value=6.2e-33 Score=313.30 Aligned_cols=449 Identities=20% Similarity=0.184 Sum_probs=321.7
Q ss_pred hhhhHHHHHHHcCCCcHHHHHHHHHH-HHhCCeEEEEecCCCchHHHHHHHHHHhcccCCCEEEEEcccHHHHHHHHHHH
Q 001722 309 FAKSKTLAEQRQYLPIFSVRDELLQV-IRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRV 387 (1020)
Q Consensus 309 ~~~~~~l~~~R~~LPi~~~q~eil~~-i~~~q~vII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~lA~qva~rv 387 (1020)
..+.+.+++.+..--+-++|--.+++ +.++.+.+|+.+|+||||++....=+...+..+++.++++|..+||+|.+..+
T Consensus 202 pe~fk~~lk~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~~g~KmlfLvPLVALANQKy~dF 281 (830)
T COG1202 202 PEKFKRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLSGGKKMLFLVPLVALANQKYEDF 281 (830)
T ss_pred cHHHHHHHHhcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHhCCCeEEEEehhHHhhcchHHHH
Confidence 34567888888776667777766655 78999999999999999999777666666666889999999999999999999
Q ss_pred HHHhccccCCEEEEEEeee----------ecCCCCccEEEEchHHHHHHHhcCCCCCCccEEEEeCCC-----cCCCCcc
Q 001722 388 SEEMDTELGDKVGYAIRFE----------DVTGPSTLIKYMTDGVLLRETLKDSDLDKYRVIVMDEAH-----ERSLSTD 452 (1020)
Q Consensus 388 a~e~~~~lG~~VGy~ir~e----------~~~s~~t~I~~~T~g~LLr~ll~d~~L~~~s~IIIDEaH-----ERs~~tD 452 (1020)
.+.+ ..+|..|...|... ..++++.+|++.|.+-+--.+.....+.+++.|||||+| ||+...|
T Consensus 282 ~~rY-s~LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg~~lgdiGtVVIDEiHtL~deERG~RLd 360 (830)
T COG1202 282 KERY-SKLGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTGKDLGDIGTVVIDEIHTLEDEERGPRLD 360 (830)
T ss_pred HHHh-hcccceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcCCcccccceEEeeeeeeccchhcccchh
Confidence 7766 56666554433221 235678999999998665555555789999999999999 6888888
Q ss_pred HHHHHHHHHHhhcCCceEEEEeccC-CHHHHHHHhCCCCeEeecCcccceeeeecCCC----chhHHHHHHHHHHH-Hhh
Q 001722 453 VLFGILKKVVARRRDFKLIVTSATL-NAQKFSDFFGSVPIFHIPGRTFPVNTLYSKTP----CEDYVEAAVKQAMT-IHI 526 (1020)
Q Consensus 453 ~ll~lLk~il~~r~~lklIlmSATl-d~~~f~~~f~~~pvi~i~gr~~pV~i~y~~~~----~~dyl~~av~~~l~-i~~ 526 (1020)
-|.+.|+.+ .|+.|+|.+|||+ |++.++..|+ +..+...+|+.|++-|..-.. ..+.+...++.-.. ...
T Consensus 361 GLI~RLr~l---~~~AQ~i~LSATVgNp~elA~~l~-a~lV~y~~RPVplErHlvf~~~e~eK~~ii~~L~k~E~~~~ss 436 (830)
T COG1202 361 GLIGRLRYL---FPGAQFIYLSATVGNPEELAKKLG-AKLVLYDERPVPLERHLVFARNESEKWDIIARLVKREFSTESS 436 (830)
T ss_pred hHHHHHHHh---CCCCeEEEEEeecCChHHHHHHhC-CeeEeecCCCCChhHeeeeecCchHHHHHHHHHHHHHHhhhhc
Confidence 777777765 6789999999999 9999999997 567778888888776543221 12233333332222 223
Q ss_pred cCCCCCEEEEcCCHHHHHHHHHHHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHHHhcCCCeEEEEecchhhcc
Q 001722 527 TSPPGDILIFMTGQDEIEAACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAETS 606 (1020)
Q Consensus 527 ~~~~g~ILVFl~g~~eie~l~~~L~e~l~~l~~~~~~~~~~l~vl~lhs~L~~~eq~~I~~~f~~g~rkVIVATniaEtG 606 (1020)
..-.|++|||.+++..|+.++..|..+ ++...|+|+||+..+|+.|...|..+.+.+||.|..++.|
T Consensus 437 kg~rGQtIVFT~SRrr~h~lA~~L~~k-------------G~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VVTTAAL~AG 503 (830)
T COG1202 437 KGYRGQTIVFTYSRRRCHELADALTGK-------------GLKAAPYHAGLPYKERKSVERAFAAQELAAVVTTAALAAG 503 (830)
T ss_pred cCcCCceEEEecchhhHHHHHHHhhcC-------------CcccccccCCCcHHHHHHHHHHHhcCCcceEeehhhhhcC
Confidence 345799999999999999999988642 7889999999999999999999999999999999999999
Q ss_pred CCCCCeeEEEEcCCccceeccCCCCcccccccccCHHHHHHHhcccCCCC---CCEEEEccChh-hHhhccCC-------
Q 001722 607 LTVDGIFYVIDTGYGKMKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTG---PGTCYRLYTES-AYLNEMLP------- 675 (1020)
Q Consensus 607 ItIp~V~~VID~G~~K~~~yd~~~g~~~L~~~piS~as~~QRaGRAGR~g---~G~cyrLyt~~-~~~~~m~~------- 675 (1020)
+|+|.-.+|.++= .+-..|+|...|.|+.|||||.+ .|++|.|..+. .|...|..
T Consensus 504 VDFPASQVIFEsL--------------aMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg~~Y~~~m~~TEdevA~ 569 (830)
T COG1202 504 VDFPASQVIFESL--------------AMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPGKKYHASMEETEDEVAF 569 (830)
T ss_pred CCCchHHHHHHHH--------------HcccccCCHHHHHHHhcccCCCCcccCceEEEEecCChhhcccccccHHHHHH
Confidence 9999766555421 23357999999999999999998 59999997654 23222221
Q ss_pred ---CCcchhccc------chhHHHHHH---hhcc-cCcccCCCCCCCCChhhHHHHHHHHHHhcCccCCC---CccHHHH
Q 001722 676 ---SPVPEIQRT------NLGNVVLLL---KSLK-IDNLLDFDFMDPPPQENILNSMYQLWVLGALNNVG---ALTDLGW 739 (1020)
Q Consensus 676 ---~~~PEI~r~------~L~~vvL~l---k~lg-i~~~~~f~~~dpP~~~~i~~al~~L~~lgaLd~~g---~LT~lG~ 739 (1020)
...||-... .+++++-.. ++.+ +..+.+..+- ..-....++..|..+|+|+.+| ++|+.|+
T Consensus 570 kLL~s~~e~V~vey~ee~e~e~vLA~~~v~~s~~~i~~v~~~~~g---~~~~~~k~l~~Lee~g~i~~~G~~v~~T~yGr 646 (830)
T COG1202 570 KLLESEPEPVIVEYDEEDEEENVLASAGVTNSLSVIERVNSLMLG---AAFDPKKALSKLEEYGMIKKKGNIVRPTPYGR 646 (830)
T ss_pred HHhcCCCCcceeccCcHHHHHHHHHHhhhcCcHHHHhhcChhhcc---ccCCHHHHHHHHHhcCCeeccCCEeeeccccc
Confidence 122322221 122222211 1111 1122211110 0112467899999999999776 6899999
Q ss_pred HhhcCCCChHHHHHHhhhhccCcHHHHHHHHHHhCC-CCcccCCcchHHHHHHHHh
Q 001722 740 KMVEFPLDPPLAKMLLMGEQLGCLDEVLTIVSMLSV-PSVFFRPKDRAEESDAARE 794 (1020)
Q Consensus 740 ~ma~lPldp~lak~ll~~~~~~c~~e~l~I~a~ls~-~~~f~~p~~~~~~~~~~r~ 794 (1020)
.++..-+.|.-+..|-.++ ..-. ..+.|++.|.- .+.++.+.-.+.-..+.+.
T Consensus 647 ava~~Fl~p~~a~~Ir~~v-~~~~-~pl~i~~~l~pfE~ayls~~l~r~i~~~~~~ 700 (830)
T COG1202 647 AVAMSFLGPSEAEFIREGV-LASM-DPLRIAAELEPFENAYLSGFLKRAIESALRG 700 (830)
T ss_pred eeEEeecCchHHHHHHHhh-hccC-ChHhHhhccccccccccChHHHHHHHHHhcC
Confidence 9999999999999998876 2222 34566666654 3444444434433334443
No 35
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=2.1e-32 Score=332.76 Aligned_cols=302 Identities=18% Similarity=0.220 Sum_probs=219.9
Q ss_pred CcHHHHHHHHHHHHhCCeEEEEecCCCchHHHHHHHHHHhcccCCCEEEEEcccHHHHHHHHHHHHHHhccccCCEEEEE
Q 001722 323 PIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELGDKVGYA 402 (1020)
Q Consensus 323 Pi~~~q~eil~~i~~~q~vII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~lA~qva~rva~e~~~~lG~~VGy~ 402 (1020)
...++|.++++++.+++++++++|||||||+++..+++.. .+.++++.|+++|+.++...+.. + |..+++.
T Consensus 25 ~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~----~g~tlVisPl~sL~~dqv~~l~~-~----gi~~~~~ 95 (607)
T PRK11057 25 QFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVL----DGLTLVVSPLISLMKDQVDQLLA-N----GVAAACL 95 (607)
T ss_pred CCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHc----CCCEEEEecHHHHHHHHHHHHHH-c----CCcEEEE
Confidence 3568999999999999999999999999999876665533 46788999999999999888753 3 3333221
Q ss_pred Eee----------eecCCCCccEEEEchHHHHHHH-hcCCCCCCccEEEEeCCCcCCCCc-cH--HHHHHHHHHhhcCCc
Q 001722 403 IRF----------EDVTGPSTLIKYMTDGVLLRET-LKDSDLDKYRVIVMDEAHERSLST-DV--LFGILKKVVARRRDF 468 (1020)
Q Consensus 403 ir~----------e~~~s~~t~I~~~T~g~LLr~l-l~d~~L~~~s~IIIDEaHERs~~t-D~--ll~lLk~il~~r~~l 468 (1020)
... ..+.....+++|+||+.|+... .......++++|||||||+.+-++ ++ .+..|..+....|+.
T Consensus 96 ~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~i~~~G~~fr~~y~~L~~l~~~~p~~ 175 (607)
T PRK11057 96 NSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTL 175 (607)
T ss_pred cCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCccccccccCcccHHHHHHHHHHHhCCCC
Confidence 111 1123345689999999887532 222234578999999999754332 22 233455555567899
Q ss_pred eEEEEeccCCHHH---HHHHhC-CCCeEeecCcccceeeeecCCCchhHHHHHHHHHHHHhhcCCCCCEEEEcCCHHHHH
Q 001722 469 KLIVTSATLNAQK---FSDFFG-SVPIFHIPGRTFPVNTLYSKTPCEDYVEAAVKQAMTIHITSPPGDILIFMTGQDEIE 544 (1020)
Q Consensus 469 klIlmSATld~~~---f~~~f~-~~pvi~i~gr~~pV~i~y~~~~~~dyl~~av~~~l~i~~~~~~g~ILVFl~g~~eie 544 (1020)
++|++|||++... +...++ ..|.+.+.....|. +.|.-......+ ..++.......++.+||||+++++++
T Consensus 176 ~~v~lTAT~~~~~~~di~~~l~l~~~~~~~~~~~r~n-l~~~v~~~~~~~----~~l~~~l~~~~~~~~IIFc~tr~~~e 250 (607)
T PRK11057 176 PFMALTATADDTTRQDIVRLLGLNDPLIQISSFDRPN-IRYTLVEKFKPL----DQLMRYVQEQRGKSGIIYCNSRAKVE 250 (607)
T ss_pred cEEEEecCCChhHHHHHHHHhCCCCeEEEECCCCCCc-ceeeeeeccchH----HHHHHHHHhcCCCCEEEEECcHHHHH
Confidence 9999999996443 334432 34555444322221 222111111111 12222222345678999999999999
Q ss_pred HHHHHHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHHHhcCCCeEEEEecchhhccCCCCCeeEEEEcCCccce
Q 001722 545 AACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAETSLTVDGIFYVIDTGYGKMK 624 (1020)
Q Consensus 545 ~l~~~L~e~l~~l~~~~~~~~~~l~vl~lhs~L~~~eq~~I~~~f~~g~rkVIVATniaEtGItIp~V~~VID~G~~K~~ 624 (1020)
.++..|.+. ++.+.++||+|+.++|..+++.|..|..+|||||+++++|||+|+|++||+
T Consensus 251 ~la~~L~~~-------------g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V~~VI~------- 310 (607)
T PRK11057 251 DTAARLQSR-------------GISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVH------- 310 (607)
T ss_pred HHHHHHHhC-------------CCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCCcCEEEE-------
Confidence 999988642 677999999999999999999999999999999999999999999999998
Q ss_pred eccCCCCcccccccccCHHHHHHHhcccCCCC-CCEEEEccChhhH
Q 001722 625 VYNPKMGMDALQVFPVSRAAADQRAGRAGRTG-PGTCYRLYTESAY 669 (1020)
Q Consensus 625 ~yd~~~g~~~L~~~piS~as~~QRaGRAGR~g-~G~cyrLyt~~~~ 669 (1020)
|| .|.|..+|.||+|||||.| +|.|+.||+..++
T Consensus 311 -~d----------~P~s~~~y~Qr~GRaGR~G~~~~~ill~~~~d~ 345 (607)
T PRK11057 311 -FD----------IPRNIESYYQETGRAGRDGLPAEAMLFYDPADM 345 (607)
T ss_pred -eC----------CCCCHHHHHHHhhhccCCCCCceEEEEeCHHHH
Confidence 44 5899999999999999999 6999999998775
No 36
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=1.6e-32 Score=338.11 Aligned_cols=306 Identities=18% Similarity=0.126 Sum_probs=216.6
Q ss_pred CCCcHHHHHHHHHHHHhCCeEEEEecCCCchHHHHHHHHHHhcccCCCEEEEEcccHHHHHHHHHHHHHHhccccCCEEE
Q 001722 321 YLPIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELGDKVG 400 (1020)
Q Consensus 321 ~LPi~~~q~eil~~i~~~q~vII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~lA~qva~rva~e~~~~lG~~VG 400 (1020)
.--..+.|.++|+++..++++++++|||+|||+++..+++.. .+.++|+.|+++|+.++...+.. .|..+.
T Consensus 458 ~~sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~----~GiTLVISPLiSLmqDQV~~L~~-----~GI~Aa 528 (1195)
T PLN03137 458 NHSFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALIC----PGITLVISPLVSLIQDQIMNLLQ-----ANIPAA 528 (1195)
T ss_pred CCCCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHc----CCcEEEEeCHHHHHHHHHHHHHh-----CCCeEE
Confidence 345678999999999999999999999999999987777654 46789999999999866555532 233333
Q ss_pred EEEeeee----------cC--CCCccEEEEchHHHHH------HHhcCCCCCCccEEEEeCCCcCCCCc-cHHHH--HHH
Q 001722 401 YAIRFED----------VT--GPSTLIKYMTDGVLLR------ETLKDSDLDKYRVIVMDEAHERSLST-DVLFG--ILK 459 (1020)
Q Consensus 401 y~ir~e~----------~~--s~~t~I~~~T~g~LLr------~ll~d~~L~~~s~IIIDEaHERs~~t-D~ll~--lLk 459 (1020)
+...... .. ....+|+|+||+.|.. .+..-.....+++|||||||+-+-+. ||--. .|.
T Consensus 529 ~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIVIDEAHcVSqWGhDFRpdYr~L~ 608 (1195)
T PLN03137 529 SLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVIDEAHCVSQWGHDFRPDYQGLG 608 (1195)
T ss_pred EEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccceeccCcchhhhhcccchHHHHHHHH
Confidence 3211110 11 1457899999998752 12111123558999999999744332 33222 233
Q ss_pred HHHhhcCCceEEEEeccCCHH---HHHHHhCCC-CeEeecCcccceeeeecCCCchhHHHHHHHHHHHHhhcCCCCCEEE
Q 001722 460 KVVARRRDFKLIVTSATLNAQ---KFSDFFGSV-PIFHIPGRTFPVNTLYSKTPCEDYVEAAVKQAMTIHITSPPGDILI 535 (1020)
Q Consensus 460 ~il~~r~~lklIlmSATld~~---~f~~~f~~~-pvi~i~gr~~pV~i~y~~~~~~dyl~~av~~~l~i~~~~~~g~ILV 535 (1020)
.+....++.+++++|||++.. .+.+.++-. +++...+...| .++|...+........+...+. .....+..||
T Consensus 609 ~Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~~~~vfr~Sf~Rp-NL~y~Vv~k~kk~le~L~~~I~--~~~~~esgII 685 (1195)
T PLN03137 609 ILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVFRQSFNRP-NLWYSVVPKTKKCLEDIDKFIK--ENHFDECGII 685 (1195)
T ss_pred HHHHhCCCCCeEEEEecCCHHHHHHHHHHcCCCCcEEeecccCcc-ceEEEEeccchhHHHHHHHHHH--hcccCCCcee
Confidence 344556788999999999643 455555432 23322222222 2333222221111111111111 1123467899
Q ss_pred EcCCHHHHHHHHHHHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHHHhcCCCeEEEEecchhhccCCCCCeeEE
Q 001722 536 FMTGQDEIEAACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAETSLTVDGIFYV 615 (1020)
Q Consensus 536 Fl~g~~eie~l~~~L~e~l~~l~~~~~~~~~~l~vl~lhs~L~~~eq~~I~~~f~~g~rkVIVATniaEtGItIp~V~~V 615 (1020)
||.++.+++.++..|.+ .++.+.++||+|+.++|..+++.|..|..+|||||+++++|||+|+|++|
T Consensus 686 YC~SRke~E~LAe~L~~-------------~Gika~~YHAGLs~eeR~~vqe~F~~Gei~VLVATdAFGMGIDkPDVR~V 752 (1195)
T PLN03137 686 YCLSRMDCEKVAERLQE-------------FGHKAAFYHGSMDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFV 752 (1195)
T ss_pred EeCchhHHHHHHHHHHH-------------CCCCeeeeeCCCCHHHHHHHHHHHhcCCCcEEEEechhhcCCCccCCcEE
Confidence 99999999999988864 26779999999999999999999999999999999999999999999999
Q ss_pred EEcCCccceeccCCCCcccccccccCHHHHHHHhcccCCCC-CCEEEEccChhhH
Q 001722 616 IDTGYGKMKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTG-PGTCYRLYTESAY 669 (1020)
Q Consensus 616 ID~G~~K~~~yd~~~g~~~L~~~piS~as~~QRaGRAGR~g-~G~cyrLyt~~~~ 669 (1020)
|+.+ .|.|..+|.||+|||||.| +|.|+.||+..++
T Consensus 753 IHyd------------------lPkSiEsYyQriGRAGRDG~~g~cILlys~~D~ 789 (1195)
T PLN03137 753 IHHS------------------LPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDY 789 (1195)
T ss_pred EEcC------------------CCCCHHHHHhhhcccCCCCCCceEEEEecHHHH
Confidence 9944 6999999999999999999 6999999998776
No 37
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=8.7e-32 Score=338.40 Aligned_cols=311 Identities=23% Similarity=0.262 Sum_probs=216.7
Q ss_pred cHHHHHHHHHHHHhCCeEEEEecCCCchHHHHHHHHHHhccc--------CCCEEEEEcccHHHHHHHHHHHHHHh----
Q 001722 324 IFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYT--------TNGIVGCTQPRRVAAMSVAKRVSEEM---- 391 (1020)
Q Consensus 324 i~~~q~eil~~i~~~q~vII~gpTGSGKTtqi~q~Lle~~~~--------~~~~Il~tqPrR~lA~qva~rva~e~---- 391 (1020)
.+++|.++++.+.++++++|++|||||||+++..++++.... .+..++++.|+|+||.++.+++.+.+
T Consensus 33 ~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraLa~di~~~L~~~l~~i~ 112 (876)
T PRK13767 33 FTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRALNNDIHRNLEEPLTEIR 112 (876)
T ss_pred CCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999999999999999999988888765432 23469999999999999988764321
Q ss_pred ------cccc-CCEEEEEEeeeec--------CCCCccEEEEchHHHHHHHhcC---CCCCCccEEEEeCCCcC-----C
Q 001722 392 ------DTEL-GDKVGYAIRFEDV--------TGPSTLIKYMTDGVLLRETLKD---SDLDKYRVIVMDEAHER-----S 448 (1020)
Q Consensus 392 ------~~~l-G~~VGy~ir~e~~--------~s~~t~I~~~T~g~LLr~ll~d---~~L~~~s~IIIDEaHER-----s 448 (1020)
|..+ +..|+ ++..+. ......|+++||+.|...+... ..|.++++|||||||+- +
T Consensus 113 ~~~~~~g~~~~~i~v~--v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l~~VVIDE~H~l~~~~RG 190 (876)
T PRK13767 113 EIAKERGEELPEIRVA--IRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPKFREKLRTVKWVIVDEIHSLAENKRG 190 (876)
T ss_pred HHHHhcCCCcCCeeEE--EEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhcCCEEEEechhhhccCccH
Confidence 2222 22222 222221 1124689999999986554322 13789999999999952 2
Q ss_pred CCccHHHHHHHHHHhhcCCceEEEEeccC-CHHHHHHHhCCC-------CeEeecCc---ccceeeeecC-----CCchh
Q 001722 449 LSTDVLFGILKKVVARRRDFKLIVTSATL-NAQKFSDFFGSV-------PIFHIPGR---TFPVNTLYSK-----TPCED 512 (1020)
Q Consensus 449 ~~tD~ll~lLk~il~~r~~lklIlmSATl-d~~~f~~~f~~~-------pvi~i~gr---~~pV~i~y~~-----~~~~d 512 (1020)
.+...++..|..+. .+++++|++|||+ +.+.++.|+.+. ++..+.+. .+++.+.... .....
T Consensus 191 ~~l~~~L~rL~~l~--~~~~q~IglSATl~~~~~va~~L~~~~~~~~~r~~~iv~~~~~k~~~i~v~~p~~~l~~~~~~~ 268 (876)
T PRK13767 191 VHLSLSLERLEELA--GGEFVRIGLSATIEPLEEVAKFLVGYEDDGEPRDCEIVDARFVKPFDIKVISPVDDLIHTPAEE 268 (876)
T ss_pred HHHHHHHHHHHHhc--CCCCeEEEEecccCCHHHHHHHhcCccccCCCCceEEEccCCCccceEEEeccCccccccccch
Confidence 22223333333332 3578999999999 678899988642 22222221 1222222110 00111
Q ss_pred HHHHHHHHHHHHhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHHHhcCC
Q 001722 513 YVEAAVKQAMTIHITSPPGDILIFMTGQDEIEAACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEG 592 (1020)
Q Consensus 513 yl~~av~~~l~i~~~~~~g~ILVFl~g~~eie~l~~~L~e~l~~l~~~~~~~~~~l~vl~lhs~L~~~eq~~I~~~f~~g 592 (1020)
........+... . ...+++||||+++..++.++..|.+.+.. ......+..+||+|+.++|..+++.|++|
T Consensus 269 ~~~~l~~~L~~~-i-~~~~~~LVF~nTr~~ae~la~~L~~~~~~-------~~~~~~i~~hHg~ls~~~R~~ve~~fk~G 339 (876)
T PRK13767 269 ISEALYETLHEL-I-KEHRTTLIFTNTRSGAERVLYNLRKRFPE-------EYDEDNIGAHHSSLSREVRLEVEEKLKRG 339 (876)
T ss_pred hHHHHHHHHHHH-H-hcCCCEEEEeCCHHHHHHHHHHHHHhchh-------hccccceeeeeCCCCHHHHHHHHHHHHcC
Confidence 111111222111 1 23578999999999999999988764321 01246789999999999999999999999
Q ss_pred CeEEEEecchhhccCCCCCeeEEEEcCCccceeccCCCCcccccccccCHHHHHHHhcccCCCC----CCEEEEccC
Q 001722 593 TRKCIVATNIAETSLTVDGIFYVIDTGYGKMKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTG----PGTCYRLYT 665 (1020)
Q Consensus 593 ~rkVIVATniaEtGItIp~V~~VID~G~~K~~~yd~~~g~~~L~~~piS~as~~QRaGRAGR~g----~G~cyrLyt 665 (1020)
.++|||||+++++|||||+|++||+.| .|.|.++|.||+|||||.+ .|.+|.+..
T Consensus 340 ~i~vLVaTs~Le~GIDip~Vd~VI~~~------------------~P~sv~~ylQRiGRaGR~~g~~~~g~ii~~~~ 398 (876)
T PRK13767 340 ELKVVVSSTSLELGIDIGYIDLVVLLG------------------SPKSVSRLLQRIGRAGHRLGEVSKGRIIVVDR 398 (876)
T ss_pred CCeEEEECChHHhcCCCCCCcEEEEeC------------------CCCCHHHHHHhcccCCCCCCCCCcEEEEEcCc
Confidence 999999999999999999999999844 5899999999999999863 377776543
No 38
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=1.1e-31 Score=300.62 Aligned_cols=320 Identities=18% Similarity=0.195 Sum_probs=244.5
Q ss_pred HHHHHcCCCcHHHHHHHHHHHHhCCeEEEEecCCCchHHHHHHHHHHhccc------CCCEEEEEcccHHHHHHHHHHHH
Q 001722 315 LAEQRQYLPIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYT------TNGIVGCTQPRRVAAMSVAKRVS 388 (1020)
Q Consensus 315 l~~~R~~LPi~~~q~eil~~i~~~q~vII~gpTGSGKTtqi~q~Lle~~~~------~~~~Il~tqPrR~lA~qva~rva 388 (1020)
........-+.++|+..|.-+..++++++.|-||||||.+++.+..+..+. ++-.++++.|||+||+|++..+.
T Consensus 96 Ai~~~GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~vlIi~PTRELA~Q~~~eak 175 (543)
T KOG0342|consen 96 AIKEMGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGVLIICPTRELAMQIFAEAK 175 (543)
T ss_pred HHHhcCccchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCCCCCeeEEEecccHHHHHHHHHHHH
Confidence 334446667889999999999999999999999999999988888776543 22368889999999999999887
Q ss_pred HHhccccCCEEEEEEeeeecC------CCCccEEEEchHHHHHHHhcCCC--CCCccEEEEeCCCcCCCCccHHHHHHHH
Q 001722 389 EEMDTELGDKVGYAIRFEDVT------GPSTLIKYMTDGVLLRETLKDSD--LDKYRVIVMDEAHERSLSTDVLFGILKK 460 (1020)
Q Consensus 389 ~e~~~~lG~~VGy~ir~e~~~------s~~t~I~~~T~g~LLr~ll~d~~--L~~~s~IIIDEaHERs~~tD~ll~lLk~ 460 (1020)
+.+...-+..||+.|.+.+.. .....|+++|||.|+.++.+.+. ..+..++|+|||+ |-++..|--.+.+.
T Consensus 176 ~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~lvlDEAD-rlLd~GF~~di~~I 254 (543)
T KOG0342|consen 176 ELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKCLVLDEAD-RLLDIGFEEDVEQI 254 (543)
T ss_pred HHHhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCcchhhccceeEeecch-hhhhcccHHHHHHH
Confidence 777666578888888776532 23789999999999999987654 5667899999999 77777766666555
Q ss_pred HHhhcCCceEEEEeccCC--HHHHHHHhC-CCCeE-eecCcccc-----eeeeecCCCchhHHHHHHHHHHHHhhcCCCC
Q 001722 461 VVARRRDFKLIVTSATLN--AQKFSDFFG-SVPIF-HIPGRTFP-----VNTLYSKTPCEDYVEAAVKQAMTIHITSPPG 531 (1020)
Q Consensus 461 il~~r~~lklIlmSATld--~~~f~~~f~-~~pvi-~i~gr~~p-----V~i~y~~~~~~dyl~~av~~~l~i~~~~~~g 531 (1020)
+-......+..++|||+. ++.++..-. ..|++ .+....-+ ++.-|.-.+....+. .+-..+..+.. ..
T Consensus 255 i~~lpk~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgyvv~~~~~~f~-ll~~~LKk~~~--~~ 331 (543)
T KOG0342|consen 255 IKILPKQRQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHERLEQGYVVAPSDSRFS-LLYTFLKKNIK--RY 331 (543)
T ss_pred HHhccccceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhhcccceEEeccccchHH-HHHHHHHHhcC--Cc
Confidence 555556789999999995 445554332 22332 22211111 223233333333322 22233333332 27
Q ss_pred CEEEEcCCHHHHHHHHHHHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHHHhcCCCeEEEEecchhhccCCCCC
Q 001722 532 DILIFMTGQDEIEAACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAETSLTVDG 611 (1020)
Q Consensus 532 ~ILVFl~g~~eie~l~~~L~e~l~~l~~~~~~~~~~l~vl~lhs~L~~~eq~~I~~~f~~g~rkVIVATniaEtGItIp~ 611 (1020)
+|+|||++...+.-+++.|.. ..+.|+-+||++++..|..++..|.....-|+||||++++|+|+|+
T Consensus 332 KiiVF~sT~~~vk~~~~lL~~-------------~dlpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTDVaARGlD~P~ 398 (543)
T KOG0342|consen 332 KIIVFFSTCMSVKFHAELLNY-------------IDLPVLEIHGKQKQNKRTSTFFEFCKAESGILVCTDVAARGLDIPD 398 (543)
T ss_pred eEEEEechhhHHHHHHHHHhh-------------cCCchhhhhcCCcccccchHHHHHhhcccceEEecchhhccCCCCC
Confidence 899999999999998888863 3788999999999999999999999999999999999999999999
Q ss_pred eeEEEEcCCccceeccCCCCcccccccccCHHHHHHHhcccCCCCC-CEEEEccChhhH
Q 001722 612 IFYVIDTGYGKMKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTGP-GTCYRLYTESAY 669 (1020)
Q Consensus 612 V~~VID~G~~K~~~yd~~~g~~~L~~~piS~as~~QRaGRAGR~g~-G~cyrLyt~~~~ 669 (1020)
|+.||+.| .|-...+|+||+||+||.|. |..+.+..+.+.
T Consensus 399 V~~VvQ~~------------------~P~d~~~YIHRvGRTaR~gk~G~alL~l~p~El 439 (543)
T KOG0342|consen 399 VDWVVQYD------------------PPSDPEQYIHRVGRTAREGKEGKALLLLAPWEL 439 (543)
T ss_pred ceEEEEeC------------------CCCCHHHHHHHhccccccCCCceEEEEeChhHH
Confidence 99999944 59999999999999999985 999999887653
No 39
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=2.1e-31 Score=323.98 Aligned_cols=302 Identities=19% Similarity=0.196 Sum_probs=217.3
Q ss_pred CcHHHHHHHHHHHHhCCeEEEEecCCCchHHHHHHHHHHhcccCCCEEEEEcccHHHHHHHHHHHHHHhccccCCEEEEE
Q 001722 323 PIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELGDKVGYA 402 (1020)
Q Consensus 323 Pi~~~q~eil~~i~~~q~vII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~lA~qva~rva~e~~~~lG~~VGy~ 402 (1020)
...+.|.++++++..++++++++|||+|||+++..+++.. ++.++|+.|+++|+.+....+.. + |..+.+-
T Consensus 13 ~fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~~----~g~~lVisPl~sL~~dq~~~l~~-~----gi~~~~~ 83 (591)
T TIGR01389 13 DFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALLL----KGLTVVISPLISLMKDQVDQLRA-A----GVAAAYL 83 (591)
T ss_pred CCCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHHc----CCcEEEEcCCHHHHHHHHHHHHH-c----CCcEEEE
Confidence 3567899999999999999999999999999977666532 46788899999999999888854 3 3334332
Q ss_pred Eee---e-------ecCCCCccEEEEchHHHHHHHh-cCCCCCCccEEEEeCCCcCCCCc-cH--HHHHHHHHHhhcCCc
Q 001722 403 IRF---E-------DVTGPSTLIKYMTDGVLLRETL-KDSDLDKYRVIVMDEAHERSLST-DV--LFGILKKVVARRRDF 468 (1020)
Q Consensus 403 ir~---e-------~~~s~~t~I~~~T~g~LLr~ll-~d~~L~~~s~IIIDEaHERs~~t-D~--ll~lLk~il~~r~~l 468 (1020)
... . .......+|+|+|++.|..... ......++++|||||||+-+.+. |+ .+..+..+....++.
T Consensus 84 ~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~~~g~~frp~y~~l~~l~~~~~~~ 163 (591)
T TIGR01389 84 NSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVSQWGHDFRPEYQRLGSLAERFPQV 163 (591)
T ss_pred eCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCcccccccCccHHHHHHHHHHHHhCCCC
Confidence 111 1 1123457899999999865322 22235689999999999754332 22 233344455556677
Q ss_pred eEEEEeccCCHH---HHHHHhCC-CCeEeecCcccceeeeecCCCchhHHHHHHHHHHHHhhcCCCCCEEEEcCCHHHHH
Q 001722 469 KLIVTSATLNAQ---KFSDFFGS-VPIFHIPGRTFPVNTLYSKTPCEDYVEAAVKQAMTIHITSPPGDILIFMTGQDEIE 544 (1020)
Q Consensus 469 klIlmSATld~~---~f~~~f~~-~pvi~i~gr~~pV~i~y~~~~~~dyl~~av~~~l~i~~~~~~g~ILVFl~g~~eie 544 (1020)
++|++|||++.. .+..+++- .+...+.+...| .+.|......+... .+...+. ....++.||||+++.+++
T Consensus 164 ~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~-nl~~~v~~~~~~~~-~l~~~l~---~~~~~~~IIf~~sr~~~e 238 (591)
T TIGR01389 164 PRIALTATADAETRQDIRELLRLADANEFITSFDRP-NLRFSVVKKNNKQK-FLLDYLK---KHRGQSGIIYASSRKKVE 238 (591)
T ss_pred CEEEEEeCCCHHHHHHHHHHcCCCCCCeEecCCCCC-CcEEEEEeCCCHHH-HHHHHHH---hcCCCCEEEEECcHHHHH
Confidence 799999999644 34555542 222222222112 22222111111111 1112222 223578999999999999
Q ss_pred HHHHHHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHHHhcCCCeEEEEecchhhccCCCCCeeEEEEcCCccce
Q 001722 545 AACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAETSLTVDGIFYVIDTGYGKMK 624 (1020)
Q Consensus 545 ~l~~~L~e~l~~l~~~~~~~~~~l~vl~lhs~L~~~eq~~I~~~f~~g~rkVIVATniaEtGItIp~V~~VID~G~~K~~ 624 (1020)
.+++.|.+ .++.+.++||+|+.++|..+++.|..|..+|||||+++++|||+|+|++||+.+
T Consensus 239 ~la~~L~~-------------~g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~VI~~~----- 300 (591)
T TIGR01389 239 ELAERLES-------------QGISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIHYD----- 300 (591)
T ss_pred HHHHHHHh-------------CCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEEEEcC-----
Confidence 99988864 256789999999999999999999999999999999999999999999999844
Q ss_pred eccCCCCcccccccccCHHHHHHHhcccCCCC-CCEEEEccChhhH
Q 001722 625 VYNPKMGMDALQVFPVSRAAADQRAGRAGRTG-PGTCYRLYTESAY 669 (1020)
Q Consensus 625 ~yd~~~g~~~L~~~piS~as~~QRaGRAGR~g-~G~cyrLyt~~~~ 669 (1020)
.|.|..+|.||+|||||.| +|.|+.+|+..+.
T Consensus 301 -------------~p~s~~~y~Q~~GRaGR~G~~~~~il~~~~~d~ 333 (591)
T TIGR01389 301 -------------MPGNLESYYQEAGRAGRDGLPAEAILLYSPADI 333 (591)
T ss_pred -------------CCCCHHHHhhhhccccCCCCCceEEEecCHHHH
Confidence 5889999999999999999 6999999998775
No 40
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=5e-32 Score=304.94 Aligned_cols=322 Identities=17% Similarity=0.223 Sum_probs=247.0
Q ss_pred HHHHHHHcCCCcHHHHHHHHHHHHhCCeEEEEecCCCchHHHHHHHHHHhcccC------CCEEEEEcccHHHHHHHHHH
Q 001722 313 KTLAEQRQYLPIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTT------NGIVGCTQPRRVAAMSVAKR 386 (1020)
Q Consensus 313 ~~l~~~R~~LPi~~~q~eil~~i~~~q~vII~gpTGSGKTtqi~q~Lle~~~~~------~~~Il~tqPrR~lA~qva~r 386 (1020)
.+-+..-...-+..+|.+.|...+.|.+|+-.+-||||||++++.++++.++.. +-.++++.|||+||.|+...
T Consensus 81 ~kgLke~~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~DGlGalIISPTRELA~QtFev 160 (758)
T KOG0343|consen 81 LKGLKEAKFVKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSPTDGLGALIISPTRELALQTFEV 160 (758)
T ss_pred HHhHhhcCCccHHHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHHcCCCCCCCceeEEecchHHHHHHHHHH
Confidence 344445567778889999999999999999999999999999999999886542 23688899999999999987
Q ss_pred HHHHhccccCCEEEEEEeeee-----cCCCCccEEEEchHHHHHHHhcCCCC--CCccEEEEeCCCcCCCCccHHHHHHH
Q 001722 387 VSEEMDTELGDKVGYAIRFED-----VTGPSTLIKYMTDGVLLRETLKDSDL--DKYRVIVMDEAHERSLSTDVLFGILK 459 (1020)
Q Consensus 387 va~e~~~~lG~~VGy~ir~e~-----~~s~~t~I~~~T~g~LLr~ll~d~~L--~~~s~IIIDEaHERs~~tD~ll~lLk 459 (1020)
+.+ .|...+-..|..|.+.+ ..-...+|++||||.||.++..++.+ +++.++|+|||+ |.+++.|--.+-.
T Consensus 161 L~k-vgk~h~fSaGLiiGG~~~k~E~eRi~~mNILVCTPGRLLQHmde~~~f~t~~lQmLvLDEAD-R~LDMGFk~tL~~ 238 (758)
T KOG0343|consen 161 LNK-VGKHHDFSAGLIIGGKDVKFELERISQMNILVCTPGRLLQHMDENPNFSTSNLQMLVLDEAD-RMLDMGFKKTLNA 238 (758)
T ss_pred HHH-HhhccccccceeecCchhHHHHHhhhcCCeEEechHHHHHHhhhcCCCCCCcceEEEeccHH-HHHHHhHHHHHHH
Confidence 743 33333334444444433 23356889999999999999988876 577899999999 8888776433333
Q ss_pred HHHhhcCCceEEEEeccC--CHHHHHHHhCCCCeE-eecC---cccc--eeeeecCCCchhHHHHHHHHHHHHhhcCCCC
Q 001722 460 KVVARRRDFKLIVTSATL--NAQKFSDFFGSVPIF-HIPG---RTFP--VNTLYSKTPCEDYVEAAVKQAMTIHITSPPG 531 (1020)
Q Consensus 460 ~il~~r~~lklIlmSATl--d~~~f~~~f~~~pvi-~i~g---r~~p--V~i~y~~~~~~dyl~~av~~~l~i~~~~~~g 531 (1020)
.+-...+.-+.+++|||. ++..++..-...|.+ .+.. ..+| +..+|.-.+..+-+. .+.....+....
T Consensus 239 Ii~~lP~~RQTLLFSATqt~svkdLaRLsL~dP~~vsvhe~a~~atP~~L~Q~y~~v~l~~Ki~----~L~sFI~shlk~ 314 (758)
T KOG0343|consen 239 IIENLPKKRQTLLFSATQTKSVKDLARLSLKDPVYVSVHENAVAATPSNLQQSYVIVPLEDKID----MLWSFIKSHLKK 314 (758)
T ss_pred HHHhCChhheeeeeecccchhHHHHHHhhcCCCcEEEEeccccccChhhhhheEEEEehhhHHH----HHHHHHHhcccc
Confidence 333345567899999999 677888875444543 3321 1122 344454444444332 223333344577
Q ss_pred CEEEEcCCHHHHHHHHHHHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHHHhcCCCeEEEEecchhhccCCCCC
Q 001722 532 DILIFMTGQDEIEAACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAETSLTVDG 611 (1020)
Q Consensus 532 ~ILVFl~g~~eie~l~~~L~e~l~~l~~~~~~~~~~l~vl~lhs~L~~~eq~~I~~~f~~g~rkVIVATniaEtGItIp~ 611 (1020)
++|||+.+.+++.-+++.+.+ -.|++.++.|||.|.+..|..+|..|-...--|++||+++++|+|+|.
T Consensus 315 K~iVF~SscKqvkf~~e~F~r-----------lrpg~~l~~L~G~~~Q~~R~ev~~~F~~~~~~vLF~TDv~aRGLDFpa 383 (758)
T KOG0343|consen 315 KSIVFLSSCKQVKFLYEAFCR-----------LRPGIPLLALHGTMSQKKRIEVYKKFVRKRAVVLFCTDVAARGLDFPA 383 (758)
T ss_pred ceEEEEehhhHHHHHHHHHHh-----------cCCCCceeeeccchhHHHHHHHHHHHHHhcceEEEeehhhhccCCCcc
Confidence 899999999999988887754 247899999999999999999999999888899999999999999999
Q ss_pred eeEEEEcCCccceeccCCCCcccccccccCHHHHHHHhcccCCCCC-CEEEEccChhhH
Q 001722 612 IFYVIDTGYGKMKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTGP-GTCYRLYTESAY 669 (1020)
Q Consensus 612 V~~VID~G~~K~~~yd~~~g~~~L~~~piS~as~~QRaGRAGR~g~-G~cyrLyt~~~~ 669 (1020)
|++||. || +|...++|+||+||+.|... |.|+.+.++...
T Consensus 384 VdwViQ--------~D----------CPedv~tYIHRvGRtAR~~~~G~sll~L~psEe 424 (758)
T KOG0343|consen 384 VDWVIQ--------VD----------CPEDVDTYIHRVGRTARYKERGESLLMLTPSEE 424 (758)
T ss_pred cceEEE--------ec----------CchhHHHHHHHhhhhhcccCCCceEEEEcchhH
Confidence 999998 66 89999999999999999984 999999987663
No 41
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.4e-31 Score=294.78 Aligned_cols=332 Identities=20% Similarity=0.228 Sum_probs=237.7
Q ss_pred HHHHHcCCCcHHHHHHHHHHHHhCCeEEEEecCCCchHHHHHHHHHHhcccC-----CC--EEEEEcccHHHHHHHHHHH
Q 001722 315 LAEQRQYLPIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTT-----NG--IVGCTQPRRVAAMSVAKRV 387 (1020)
Q Consensus 315 l~~~R~~LPi~~~q~eil~~i~~~q~vII~gpTGSGKTtqi~q~Lle~~~~~-----~~--~Il~tqPrR~lA~qva~rv 387 (1020)
..+.-..=-..++|...|+.+..|++|++.++||||||.++..++++..+.. .+ ..+++.|||+||.|+.+.+
T Consensus 20 ~l~~~GF~~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgalIIsPTRELa~QI~~V~ 99 (567)
T KOG0345|consen 20 ALDESGFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGALIISPTRELARQIREVA 99 (567)
T ss_pred HHHhcCCcccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEEEecCcHHHHHHHHHHH
Confidence 3344344457799999999999999999999999999999999999876432 22 5678999999999988765
Q ss_pred HHHhcccc-----CCEEEEEEeeee---cCCCCccEEEEchHHHHHHHhcC-CC--CCCccEEEEeCCCcCCCCccHHHH
Q 001722 388 SEEMDTEL-----GDKVGYAIRFED---VTGPSTLIKYMTDGVLLRETLKD-SD--LDKYRVIVMDEAHERSLSTDVLFG 456 (1020)
Q Consensus 388 a~e~~~~l-----G~~VGy~ir~e~---~~s~~t~I~~~T~g~LLr~ll~d-~~--L~~~s~IIIDEaHERs~~tD~ll~ 456 (1020)
.. +-..+ ...||..--.++ ....+..|+++|||.|+..+... .. +..++++|||||+ |-+++.|--.
T Consensus 100 ~~-F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVLDEAD-rLldmgFe~~ 177 (567)
T KOG0345|consen 100 QP-FLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILVLDEAD-RLLDMGFEAS 177 (567)
T ss_pred HH-HHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccceEEecchH-hHhcccHHHH
Confidence 43 32221 112222111111 12356789999999999988763 22 4589999999999 7777776544
Q ss_pred HHHHHHhhcCCceEEEEeccCC--HHHHHHHhCCCCe-EeecCcc---cc--eeeeecCCCchhHHHHHHHHHHHHhhcC
Q 001722 457 ILKKVVARRRDFKLIVTSATLN--AQKFSDFFGSVPI-FHIPGRT---FP--VNTLYSKTPCEDYVEAAVKQAMTIHITS 528 (1020)
Q Consensus 457 lLk~il~~r~~lklIlmSATld--~~~f~~~f~~~pv-i~i~gr~---~p--V~i~y~~~~~~dyl~~av~~~l~i~~~~ 528 (1020)
+-..+-.....-+.=++|||.+ .+.+....-..|+ +.+.... -| +..+|...... ..+.+++.+..+.
T Consensus 178 ~n~ILs~LPKQRRTGLFSATq~~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~~a~----eK~~~lv~~L~~~ 253 (567)
T KOG0345|consen 178 VNTILSFLPKQRRTGLFSATQTQEVEDLARAGLRNPVRVSVKEKSKSATPSSLALEYLVCEAD----EKLSQLVHLLNNN 253 (567)
T ss_pred HHHHHHhcccccccccccchhhHHHHHHHHhhccCceeeeecccccccCchhhcceeeEecHH----HHHHHHHHHHhcc
Confidence 4333333334557788999993 5566665544454 3333222 23 55555543322 1233344444455
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHHHhcCCCeEEEEecchhhccCC
Q 001722 529 PPGDILIFMTGQDEIEAACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAETSLT 608 (1020)
Q Consensus 529 ~~g~ILVFl~g~~eie~l~~~L~e~l~~l~~~~~~~~~~l~vl~lhs~L~~~eq~~I~~~f~~g~rkVIVATniaEtGIt 608 (1020)
..+++|||+++...++.....+... .....++.+||.|....|.++++.|.....-|++||++|++|||
T Consensus 254 ~~kK~iVFF~TCasVeYf~~~~~~~-----------l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TDVaARGlD 322 (567)
T KOG0345|consen 254 KDKKCIVFFPTCASVEYFGKLFSRL-----------LKKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCTDVAARGLD 322 (567)
T ss_pred ccccEEEEecCcchHHHHHHHHHHH-----------hCCCcEEEecchhcchhHHHHHHHHHhccCceEEeehhhhccCC
Confidence 6789999999999999887777543 24778999999999999999999999988899999999999999
Q ss_pred CCCeeEEEEcCCccceeccCCCCcccccccccCHHHHHHHhcccCCCCC-CEEEEcc--ChhhHhhccCCCCcchh
Q 001722 609 VDGIFYVIDTGYGKMKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTGP-GTCYRLY--TESAYLNEMLPSPVPEI 681 (1020)
Q Consensus 609 Ip~V~~VID~G~~K~~~yd~~~g~~~L~~~piS~as~~QRaGRAGR~g~-G~cyrLy--t~~~~~~~m~~~~~PEI 681 (1020)
||||++||+ || .|...+++.||+||+||.|. |.++.+. .+.+|.+.|.....|++
T Consensus 323 ip~iD~VvQ--------~D----------pP~~~~~FvHR~GRTaR~gr~G~Aivfl~p~E~aYveFl~i~~~v~l 380 (567)
T KOG0345|consen 323 IPGIDLVVQ--------FD----------PPKDPSSFVHRCGRTARAGREGNAIVFLNPREEAYVEFLRIKGKVEL 380 (567)
T ss_pred CCCceEEEe--------cC----------CCCChhHHHhhcchhhhccCccceEEEecccHHHHHHHHHhcCccch
Confidence 999999998 88 58899999999999999984 7665554 45566555544444543
No 42
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=1.7e-30 Score=280.87 Aligned_cols=318 Identities=21% Similarity=0.282 Sum_probs=237.1
Q ss_pred HHHHHHcCCCc---HHHHHHHHHHHHhCCeEEEEecCCCchHHHHHHHHHHhcccCC--CEEEEEcccHHHHHHHHHHHH
Q 001722 314 TLAEQRQYLPI---FSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTTN--GIVGCTQPRRVAAMSVAKRVS 388 (1020)
Q Consensus 314 ~l~~~R~~LPi---~~~q~eil~~i~~~q~vII~gpTGSGKTtqi~q~Lle~~~~~~--~~Il~tqPrR~lA~qva~rva 388 (1020)
-+.++-+.|-+ .++|..++..|+.|+++|-+|.||||||+++..++++.+-... .-.+++.|+|++|.|+++++
T Consensus 17 Wlve~l~~l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsedP~giFalvlTPTrELA~QiaEQF- 95 (442)
T KOG0340|consen 17 WLVEQLKALGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSEDPYGIFALVLTPTRELALQIAEQF- 95 (442)
T ss_pred HHHHHHHHhcCCCCCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccCCCcceEEEecchHHHHHHHHHHH-
Confidence 34444444443 4789999999999999999999999999999999998764432 24678899999999999999
Q ss_pred HHhccccCCEEEEEEeeeec------CCCCccEEEEchHHHHHHHhcCC-----CCCCccEEEEeCCCcCCCCccHHHHH
Q 001722 389 EEMDTELGDKVGYAIRFEDV------TGPSTLIKYMTDGVLLRETLKDS-----DLDKYRVIVMDEAHERSLSTDVLFGI 457 (1020)
Q Consensus 389 ~e~~~~lG~~VGy~ir~e~~------~s~~t~I~~~T~g~LLr~ll~d~-----~L~~~s~IIIDEaHERs~~tD~ll~l 457 (1020)
..+|..++..+..-+.+.+. .+...+++++|||.|...+.+++ .+.++.++|||||+ |-+..++- ..
T Consensus 96 ~alGk~l~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlDEAD-rvL~~~f~-d~ 173 (442)
T KOG0340|consen 96 IALGKLLNLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLDEAD-RVLAGCFP-DI 173 (442)
T ss_pred HHhcccccceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhceeeEEecchh-hhhccchh-hH
Confidence 45677777776666666653 34578899999999999887763 38899999999999 66666542 22
Q ss_pred HHHHHhhcCC-ceEEEEeccCCHHHHHHHhCCCCeE-----ee---cCcccc--eeeeecCCCchhHH-HHHHHHHHHHh
Q 001722 458 LKKVVARRRD-FKLIVTSATLNAQKFSDFFGSVPIF-----HI---PGRTFP--VNTLYSKTPCEDYV-EAAVKQAMTIH 525 (1020)
Q Consensus 458 Lk~il~~r~~-lklIlmSATld~~~f~~~f~~~pvi-----~i---~gr~~p--V~i~y~~~~~~dyl-~~av~~~l~i~ 525 (1020)
|..+..--|. -+.+++|||++ +.+...|+ +|+- .. +|-..+ +...|.- +..++ +..+-..+...
T Consensus 174 L~~i~e~lP~~RQtLlfSATit-d~i~ql~~-~~i~k~~a~~~e~~~~vstvetL~q~yI~--~~~~vkdaYLv~~Lr~~ 249 (442)
T KOG0340|consen 174 LEGIEECLPKPRQTLLFSATIT-DTIKQLFG-CPITKSIAFELEVIDGVSTVETLYQGYIL--VSIDVKDAYLVHLLRDF 249 (442)
T ss_pred HhhhhccCCCccceEEEEeehh-hHHHHhhc-CCcccccceEEeccCCCCchhhhhhheee--cchhhhHHHHHHHHhhh
Confidence 3333333333 48999999993 22333443 3321 11 111110 0111111 11122 22233344444
Q ss_pred hcCCCCCEEEEcCCHHHHHHHHHHHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHHHhcCCCeEEEEecchhhc
Q 001722 526 ITSPPGDILIFMTGQDEIEAACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAET 605 (1020)
Q Consensus 526 ~~~~~g~ILVFl~g~~eie~l~~~L~e~l~~l~~~~~~~~~~l~vl~lhs~L~~~eq~~I~~~f~~g~rkVIVATniaEt 605 (1020)
..++.+.++||+++..+|+.+...|.. -++.+..+||.|++.+|...+..|+.+..+|||||++|.+
T Consensus 250 ~~~~~~simIFvnttr~cQ~l~~~l~~-------------le~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVAsR 316 (442)
T KOG0340|consen 250 ENKENGSIMIFVNTTRECQLLSMTLKN-------------LEVRVVSLHSQMPQKERLAALSRFRSNAARILIATDVASR 316 (442)
T ss_pred hhccCceEEEEeehhHHHHHHHHHHhh-------------hceeeeehhhcchHHHHHHHHHHHhhcCccEEEEechhhc
Confidence 444689999999999999888877754 2789999999999999999999999999999999999999
Q ss_pred cCCCCCeeEEEEcCCccceeccCCCCcccccccccCHHHHHHHhcccCCCCC-CEEEEccChhhH
Q 001722 606 SLTVDGIFYVIDTGYGKMKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTGP-GTCYRLYTESAY 669 (1020)
Q Consensus 606 GItIp~V~~VID~G~~K~~~yd~~~g~~~L~~~piS~as~~QRaGRAGR~g~-G~cyrLyt~~~~ 669 (1020)
|+|||.|..||| || .|-.+..|+||.||+.|.|. |..+.++|+.+.
T Consensus 317 GLDIP~V~LVvN--------~d----------iPr~P~~yiHRvGRtARAGR~G~aiSivt~rDv 363 (442)
T KOG0340|consen 317 GLDIPTVELVVN--------HD----------IPRDPKDYIHRVGRTARAGRKGMAISIVTQRDV 363 (442)
T ss_pred CCCCCceeEEEe--------cC----------CCCCHHHHHHhhcchhcccCCcceEEEechhhH
Confidence 999999999999 77 79999999999999999996 999999997665
No 43
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=5.4e-31 Score=294.58 Aligned_cols=317 Identities=20% Similarity=0.261 Sum_probs=232.4
Q ss_pred HHHcCCCcHHHHHHHHHHHHhCCeEEEEecCCCchHHHHHHHHHHhcccCC-----CEEEEEcccHHHHHHHHHHHHHHh
Q 001722 317 EQRQYLPIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTTN-----GIVGCTQPRRVAAMSVAKRVSEEM 391 (1020)
Q Consensus 317 ~~R~~LPi~~~q~eil~~i~~~q~vII~gpTGSGKTtqi~q~Lle~~~~~~-----~~Il~tqPrR~lA~qva~rva~e~ 391 (1020)
..-.+--..++|...|+..+-+++++.||.||||||.++..++++..+... .+|+|++|||+||+|++....+ +
T Consensus 197 ~~lGy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~~~~TRVLVL~PTRELaiQv~sV~~q-l 275 (691)
T KOG0338|consen 197 STLGYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPKKVAATRVLVLVPTRELAIQVHSVTKQ-L 275 (691)
T ss_pred HhcCCCCCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCcccCcceeEEEEeccHHHHHHHHHHHHH-H
Confidence 334555667889999999999999999999999999999999999865433 3899999999999998764422 2
Q ss_pred ccccCCEEEEEEeeeec------CCCCccEEEEchHHHHHHHhcCCC--CCCccEEEEeCCCcCCCCccHHHHHHHHHHh
Q 001722 392 DTELGDKVGYAIRFEDV------TGPSTLIKYMTDGVLLRETLKDSD--LDKYRVIVMDEAHERSLSTDVLFGILKKVVA 463 (1020)
Q Consensus 392 ~~~lG~~VGy~ir~e~~------~s~~t~I~~~T~g~LLr~ll~d~~--L~~~s~IIIDEaHERs~~tD~ll~lLk~il~ 463 (1020)
..-....||..|.+-+. .....+|+++|||.|..++.+.+. |+++.++|||||+ |.+...|. .-++.++.
T Consensus 276 aqFt~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEAD-RMLeegFa-demnEii~ 353 (691)
T KOG0338|consen 276 AQFTDITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEAD-RMLEEGFA-DEMNEIIR 353 (691)
T ss_pred HhhccceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCCCccccceeEEEechHH-HHHHHHHH-HHHHHHHH
Confidence 22233556665555443 234678999999999999988764 8899999999999 77766553 33444444
Q ss_pred hc-CCceEEEEeccC--CHHHHHHHhCCCCeE-ee-cCcccc--eeeeecC-CCchhHHHHHHHHHHHHhhcCCCCCEEE
Q 001722 464 RR-RDFKLIVTSATL--NAQKFSDFFGSVPIF-HI-PGRTFP--VNTLYSK-TPCEDYVEAAVKQAMTIHITSPPGDILI 535 (1020)
Q Consensus 464 ~r-~~lklIlmSATl--d~~~f~~~f~~~pvi-~i-~gr~~p--V~i~y~~-~~~~dyl~~av~~~l~i~~~~~~g~ILV 535 (1020)
.. .+-+.+++|||| .++.+...-.+-|+- .+ +....+ +...|.. .|..+....++-..+.. ......++|
T Consensus 354 lcpk~RQTmLFSATMteeVkdL~slSL~kPvrifvd~~~~~a~~LtQEFiRIR~~re~dRea~l~~l~~--rtf~~~~iv 431 (691)
T KOG0338|consen 354 LCPKNRQTMLFSATMTEEVKDLASLSLNKPVRIFVDPNKDTAPKLTQEFIRIRPKREGDREAMLASLIT--RTFQDRTIV 431 (691)
T ss_pred hccccccceeehhhhHHHHHHHHHhhcCCCeEEEeCCccccchhhhHHHheeccccccccHHHHHHHHH--HhcccceEE
Confidence 33 356899999999 366777765555542 22 211111 1111211 11111111121111111 112467999
Q ss_pred EcCCHHHHHHHHHHHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHHHhcCCCeEEEEecchhhccCCCCCeeEE
Q 001722 536 FMTGQDEIEAACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAETSLTVDGIFYV 615 (1020)
Q Consensus 536 Fl~g~~eie~l~~~L~e~l~~l~~~~~~~~~~l~vl~lhs~L~~~eq~~I~~~f~~g~rkVIVATniaEtGItIp~V~~V 615 (1020)
|+.+++.+..+--.| ...++.+.-+||+|++++|...++.|+.+.+.|||||++|.+||||+||..|
T Consensus 432 Fv~tKk~AHRl~Ill-------------GLlgl~agElHGsLtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI~gV~tV 498 (691)
T KOG0338|consen 432 FVRTKKQAHRLRILL-------------GLLGLKAGELHGSLTQEQRLESLEKFKKEEIDVLIATDVASRGLDIEGVQTV 498 (691)
T ss_pred EEehHHHHHHHHHHH-------------HHhhchhhhhcccccHHHHHHHHHHHHhccCCEEEEechhhccCCccceeEE
Confidence 999999888774433 1237888899999999999999999999999999999999999999999999
Q ss_pred EEcCCccceeccCCCCcccccccccCHHHHHHHhcccCCCCC-CEEEEccChhhH
Q 001722 616 IDTGYGKMKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTGP-GTCYRLYTESAY 669 (1020)
Q Consensus 616 ID~G~~K~~~yd~~~g~~~L~~~piS~as~~QRaGRAGR~g~-G~cyrLyt~~~~ 669 (1020)
|| |+ .|.+...|+||+||+.|.|. |..+.|..+.+-
T Consensus 499 IN--------y~----------mP~t~e~Y~HRVGRTARAGRaGrsVtlvgE~dR 535 (691)
T KOG0338|consen 499 IN--------YA----------MPKTIEHYLHRVGRTARAGRAGRSVTLVGESDR 535 (691)
T ss_pred Ee--------cc----------CchhHHHHHHHhhhhhhcccCcceEEEeccccH
Confidence 99 66 79999999999999999995 999999998754
No 44
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.97 E-value=3.6e-29 Score=312.62 Aligned_cols=300 Identities=20% Similarity=0.254 Sum_probs=217.0
Q ss_pred CCcHHHHHHHHHHHHhC------CeEEEEecCCCchHHHHHHHHHHhcccCCCEEEEEcccHHHHHHHHHHHHHHhcccc
Q 001722 322 LPIFSVRDELLQVIREN------QVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTEL 395 (1020)
Q Consensus 322 LPi~~~q~eil~~i~~~------q~vII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~lA~qva~rva~e~~~~l 395 (1020)
....+.|.++++.|.++ .+++|+|+||||||.++..+++.... .+.+++++.||++||.|++..+.+.+. .+
T Consensus 450 f~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~-~g~qvlvLvPT~~LA~Q~~~~f~~~~~-~~ 527 (926)
T TIGR00580 450 FEETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVL-DGKQVAVLVPTTLLAQQHFETFKERFA-NF 527 (926)
T ss_pred CCCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHH-hCCeEEEEeCcHHHHHHHHHHHHHHhc-cC
Confidence 34578999999999875 78999999999999998877776543 357899999999999999999977654 23
Q ss_pred CCEEEEEEeeee----------cCCCCccEEEEchHHHHHHHhcCCCCCCccEEEEeCCCcCCCCccHHHHHHHHHHhhc
Q 001722 396 GDKVGYAIRFED----------VTGPSTLIKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARR 465 (1020)
Q Consensus 396 G~~VGy~ir~e~----------~~s~~t~I~~~T~g~LLr~ll~d~~L~~~s~IIIDEaHERs~~tD~ll~lLk~il~~r 465 (1020)
+..++.-.++.. ......+|+++|+..+ ..+..+.++++|||||+|..+... ...+....
T Consensus 528 ~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll----~~~v~f~~L~llVIDEahrfgv~~------~~~L~~~~ 597 (926)
T TIGR00580 528 PVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLL----QKDVKFKDLGLLIIDEEQRFGVKQ------KEKLKELR 597 (926)
T ss_pred CcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHh----hCCCCcccCCEEEeecccccchhH------HHHHHhcC
Confidence 444443322221 1123578999999543 234468899999999999643321 12222345
Q ss_pred CCceEEEEeccCCHHHHHHHh-C--CCCeEeec-CcccceeeeecCCCchhHHHHHHHHHHHHhhcCCCCCEEEEcCCHH
Q 001722 466 RDFKLIVTSATLNAQKFSDFF-G--SVPIFHIP-GRTFPVNTLYSKTPCEDYVEAAVKQAMTIHITSPPGDILIFMTGQD 541 (1020)
Q Consensus 466 ~~lklIlmSATld~~~f~~~f-~--~~pvi~i~-gr~~pV~i~y~~~~~~dyl~~av~~~l~i~~~~~~g~ILVFl~g~~ 541 (1020)
++.++|+||||+....+...+ + +..++..+ ....|+..++.... ...+..++... . ..++.++|||++.+
T Consensus 598 ~~~~vL~~SATpiprtl~~~l~g~~d~s~I~~~p~~R~~V~t~v~~~~-~~~i~~~i~~e----l-~~g~qv~if~n~i~ 671 (926)
T TIGR00580 598 TSVDVLTLSATPIPRTLHMSMSGIRDLSIIATPPEDRLPVRTFVMEYD-PELVREAIRRE----L-LRGGQVFYVHNRIE 671 (926)
T ss_pred CCCCEEEEecCCCHHHHHHHHhcCCCcEEEecCCCCccceEEEEEecC-HHHHHHHHHHH----H-HcCCeEEEEECCcH
Confidence 678999999999766654432 2 22233332 22356666554322 12222222111 1 23689999999999
Q ss_pred HHHHHHHHHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHHHhcCCCeEEEEecchhhccCCCCCeeEEEEcCCc
Q 001722 542 EIEAACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAETSLTVDGIFYVIDTGYG 621 (1020)
Q Consensus 542 eie~l~~~L~e~l~~l~~~~~~~~~~l~vl~lhs~L~~~eq~~I~~~f~~g~rkVIVATniaEtGItIp~V~~VID~G~~ 621 (1020)
+++.+++.|.+. .+++.+..+||+|+..+|..+++.|.+|+.+|||||+++|+|||||++++||.
T Consensus 672 ~~e~l~~~L~~~-----------~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDIp~v~~VIi---- 736 (926)
T TIGR00580 672 SIEKLATQLREL-----------VPEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGIDIPNANTIII---- 736 (926)
T ss_pred HHHHHHHHHHHh-----------CCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcccccccCCEEEE----
Confidence 999998888653 25678999999999999999999999999999999999999999999999996
Q ss_pred cceeccCCCCcccccccccCHHHHHHHhcccCCCC-CCEEEEccChh
Q 001722 622 KMKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTG-PGTCYRLYTES 667 (1020)
Q Consensus 622 K~~~yd~~~g~~~L~~~piS~as~~QRaGRAGR~g-~G~cyrLyt~~ 667 (1020)
||+. ..+.+++.||+||+||.| .|.||.|++..
T Consensus 737 ----~~a~---------~~gls~l~Qr~GRvGR~g~~g~aill~~~~ 770 (926)
T TIGR00580 737 ----ERAD---------KFGLAQLYQLRGRVGRSKKKAYAYLLYPHQ 770 (926)
T ss_pred ----ecCC---------CCCHHHHHHHhcCCCCCCCCeEEEEEECCc
Confidence 3321 234568999999999998 59999999754
No 45
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=8.3e-30 Score=286.56 Aligned_cols=341 Identities=19% Similarity=0.258 Sum_probs=238.4
Q ss_pred HHHHHHcCCCcHHHHHHHHHHHHhCCeEEEEecCCCchHHHHHHHHHHhccc--------CCCEEEEEcccHHHHHHHHH
Q 001722 314 TLAEQRQYLPIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYT--------TNGIVGCTQPRRVAAMSVAK 385 (1020)
Q Consensus 314 ~l~~~R~~LPi~~~q~eil~~i~~~q~vII~gpTGSGKTtqi~q~Lle~~~~--------~~~~Il~tqPrR~lA~qva~ 385 (1020)
.|......--...+|.+.|..|+++++++|.++||||||+++..++.+.... .+.-.+|++|||+||.|++.
T Consensus 150 ~L~~~m~i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G~~ALVivPTREL~~Q~y~ 229 (708)
T KOG0348|consen 150 HLNTKMKISAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGPYALVIVPTRELALQIYE 229 (708)
T ss_pred HHHHHhccCccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccCCceEEEEechHHHHHHHHH
Confidence 3444444455778999999999999999999999999999998888876432 23468899999999999999
Q ss_pred HHHHHhccccCCEEEEEEeeeecCCC------CccEEEEchHHHHHHHhcCCC--CCCccEEEEeCCC---cCCCCccH-
Q 001722 386 RVSEEMDTELGDKVGYAIRFEDVTGP------STLIKYMTDGVLLRETLKDSD--LDKYRVIVMDEAH---ERSLSTDV- 453 (1020)
Q Consensus 386 rva~e~~~~lG~~VGy~ir~e~~~s~------~t~I~~~T~g~LLr~ll~d~~--L~~~s~IIIDEaH---ERs~~tD~- 453 (1020)
.+.+...+..=..-|+-+.+|...++ +..|++.|||.|+.++.+... ++++..||+||++ |.+..-|+
T Consensus 230 ~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s~LRwlVlDEaDrlleLGfekdit 309 (708)
T KOG0348|consen 230 TVQKLLKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKSIKFSRLRWLVLDEADRLLELGFEKDIT 309 (708)
T ss_pred HHHHHhcCceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccchheeeeeeEEEecchhHHHhccchhhHH
Confidence 99887665322334666777776654 678999999999999987643 7889999999999 23333332
Q ss_pred -HHHHHHHHH---hhc----CCceEEEEeccC--CHHHHHHHhCCCCeEeecCcc----cc----------------e--
Q 001722 454 -LFGILKKVV---ARR----RDFKLIVTSATL--NAQKFSDFFGSVPIFHIPGRT----FP----------------V-- 501 (1020)
Q Consensus 454 -ll~lLk~il---~~r----~~lklIlmSATl--d~~~f~~~f~~~pvi~i~gr~----~p----------------V-- 501 (1020)
++..+..+. ... +..+-+++|||+ .+..+++.--..|++.--... .| +
T Consensus 310 ~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv~I~ld~s~~~~~p~~~a~~ev~~~~~~~~l~~ 389 (708)
T KOG0348|consen 310 QILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDPVYISLDKSHSQLNPKDKAVQEVDDGPAGDKLDS 389 (708)
T ss_pred HHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhhccccCceeeeccchhhhcCcchhhhhhcCCccccccccc
Confidence 333332211 111 125678999999 367777754444443220000 00 0
Q ss_pred -------eeeecCCCchhHHHHHHHHHHHHhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHHHh-hccc----cC----CC
Q 001722 502 -------NTLYSKTPCEDYVEAAVKQAMTIHITSPPGDILIFMTGQDEIEAACFALKERMEQL-ISST----TR----EV 565 (1020)
Q Consensus 502 -------~i~y~~~~~~dyl~~av~~~l~i~~~~~~g~ILVFl~g~~eie~l~~~L~e~l~~l-~~~~----~~----~~ 565 (1020)
...|...|..-.+-+....+.......+..+++||+.+.+.++--+..+.+.+..- ..+. .. -.
T Consensus 390 ~~iPeqL~qry~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~~s~~~~s~g~~~l~ 469 (708)
T KOG0348|consen 390 FAIPEQLLQRYTVVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSHLEGSSGAPDSEGLPPLF 469 (708)
T ss_pred ccCcHHhhhceEecCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhcccccccCCcccCCChhhh
Confidence 11122222222222333333444444556689999999999988888777654320 0000 01 12
Q ss_pred CCeEEEEecCCCCHHHHHHHHHHhcCCCeEEEEecchhhccCCCCCeeEEEEcCCccceeccCCCCcccccccccCHHHH
Q 001722 566 PELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAETSLTVDGIFYVIDTGYGKMKVYNPKMGMDALQVFPVSRAAA 645 (1020)
Q Consensus 566 ~~l~vl~lhs~L~~~eq~~I~~~f~~g~rkVIVATniaEtGItIp~V~~VID~G~~K~~~yd~~~g~~~L~~~piS~as~ 645 (1020)
.++.++-|||+|.+++|..+|+.|.....-|++||++|++|||+|+|++||. || .|.|.+.|
T Consensus 470 ~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQ--------Yd----------~P~s~ady 531 (708)
T KOG0348|consen 470 MDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVVQ--------YD----------PPFSTADY 531 (708)
T ss_pred hcceEEEecCchhHHHHHHHHHhhccccceEEEehhhhhccCCCCCcCeEEE--------eC----------CCCCHHHH
Confidence 2456899999999999999999999999999999999999999999999998 88 79999999
Q ss_pred HHHhcccCCCCC-CEEEEcc--ChhhHhhc
Q 001722 646 DQRAGRAGRTGP-GTCYRLY--TESAYLNE 672 (1020)
Q Consensus 646 ~QRaGRAGR~g~-G~cyrLy--t~~~~~~~ 672 (1020)
+||+||+.|.|. |....+. ++.+|.+.
T Consensus 532 lHRvGRTARaG~kG~alLfL~P~Eaey~~~ 561 (708)
T KOG0348|consen 532 LHRVGRTARAGEKGEALLFLLPSEAEYVNY 561 (708)
T ss_pred HHHhhhhhhccCCCceEEEecccHHHHHHH
Confidence 999999999984 7655544 45556443
No 46
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.97 E-value=1.1e-29 Score=307.93 Aligned_cols=364 Identities=21% Similarity=0.231 Sum_probs=261.9
Q ss_pred CCCcHHHHHHHHHHHHhCCeEEEEecCCCchHHHHHHHHHHhcccCC-------CEEEEEcccHHHHHHHHHHHHHHhcc
Q 001722 321 YLPIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTTN-------GIVGCTQPRRVAAMSVAKRVSEEMDT 393 (1020)
Q Consensus 321 ~LPi~~~q~eil~~i~~~q~vII~gpTGSGKTtqi~q~Lle~~~~~~-------~~Il~tqPrR~lA~qva~rva~e~~~ 393 (1020)
.--..+.|.+++..|.+|++++|+||||||||.++..+++......+ -.++++.|.|+|+..+-.++ +.++.
T Consensus 20 ~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn~Di~~rL-~~~~~ 98 (814)
T COG1201 20 FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKALNNDIRRRL-EEPLR 98 (814)
T ss_pred cCCCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHHHHHHHHHH-HHHHH
Confidence 55577899999999999999999999999999999888887755441 26889999999999999999 56666
Q ss_pred ccCCEEEEEEeeeecC--------CCCccEEEEchHHHHHHHhcC---CCCCCccEEEEeCCCc-----CCCCccHHHHH
Q 001722 394 ELGDKVGYAIRFEDVT--------GPSTLIKYMTDGVLLRETLKD---SDLDKYRVIVMDEAHE-----RSLSTDVLFGI 457 (1020)
Q Consensus 394 ~lG~~VGy~ir~e~~~--------s~~t~I~~~T~g~LLr~ll~d---~~L~~~s~IIIDEaHE-----Rs~~tD~ll~l 457 (1020)
.+|..| .+|..+.. ..-.+|+++||+.|.-.+... ..|.++.+|||||+|+ |+...-+.+..
T Consensus 99 ~~G~~v--~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~~sKRG~~Lsl~LeR 176 (814)
T COG1201 99 ELGIEV--AVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALAESKRGVQLALSLER 176 (814)
T ss_pred HcCCcc--ceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhhhccccchhhhhhHHH
Confidence 788877 55655532 234689999999987665543 3489999999999995 77766666666
Q ss_pred HHHHHhhcCCceEEEEeccC-CHHHHHHHhCCC----CeEeecCc-ccceeeeecCCCchh---HHHHHHHHHHHHhhcC
Q 001722 458 LKKVVARRRDFKLIVTSATL-NAQKFSDFFGSV----PIFHIPGR-TFPVNTLYSKTPCED---YVEAAVKQAMTIHITS 528 (1020)
Q Consensus 458 Lk~il~~r~~lklIlmSATl-d~~~f~~~f~~~----pvi~i~gr-~~pV~i~y~~~~~~d---yl~~av~~~l~i~~~~ 528 (1020)
|+.+.. +++-|++|||. +.+..++|+.+. .++.+.+. .+.+.+........+ ....++..+..+. .
T Consensus 177 L~~l~~---~~qRIGLSATV~~~~~varfL~g~~~~~~Iv~~~~~k~~~i~v~~p~~~~~~~~~~~~~~~~~i~~~v--~ 251 (814)
T COG1201 177 LRELAG---DFQRIGLSATVGPPEEVAKFLVGFGDPCEIVDVSAAKKLEIKVISPVEDLIYDEELWAALYERIAELV--K 251 (814)
T ss_pred HHhhCc---ccEEEeehhccCCHHHHHHHhcCCCCceEEEEcccCCcceEEEEecCCccccccchhHHHHHHHHHHH--h
Confidence 666543 89999999999 899999999754 35555433 344454443322111 1122333333322 1
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHHHhcCCCeEEEEecchhhccCC
Q 001722 529 PPGDILIFMTGQDEIEAACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAETSLT 608 (1020)
Q Consensus 529 ~~g~ILVFl~g~~eie~l~~~L~e~l~~l~~~~~~~~~~l~vl~lhs~L~~~eq~~I~~~f~~g~rkVIVATniaEtGIt 608 (1020)
....+|||+|++..+|.++..|.+.. ...+..|||+|+.+.|..+++.+++|..++||||+.+|-|||
T Consensus 252 ~~~ttLIF~NTR~~aE~l~~~L~~~~------------~~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSLELGID 319 (814)
T COG1201 252 KHRTTLIFTNTRSGAERLAFRLKKLG------------PDIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLELGID 319 (814)
T ss_pred hcCcEEEEEeChHHHHHHHHHHHHhc------------CCceeeecccccHHHHHHHHHHHhcCCceEEEEccchhhccc
Confidence 23489999999999999999887642 267899999999999999999999999999999999999999
Q ss_pred CCCeeEEEEcCCccceeccCCCCcccccccccCHHHHHHHhcccCCCC----CCEEEEccChhhHhhcc--------CCC
Q 001722 609 VDGIFYVIDTGYGKMKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTG----PGTCYRLYTESAYLNEM--------LPS 676 (1020)
Q Consensus 609 Ip~V~~VID~G~~K~~~yd~~~g~~~L~~~piS~as~~QRaGRAGR~g----~G~cyrLyt~~~~~~~m--------~~~ 676 (1020)
|.+|+.||+.| .|.|.+.+.||+||+|+.- .|..|... ..+..... -..
T Consensus 320 iG~vdlVIq~~------------------SP~sV~r~lQRiGRsgHr~~~~Skg~ii~~~-r~dllE~~vi~~~a~~g~l 380 (814)
T COG1201 320 IGDIDLVIQLG------------------SPKSVNRFLQRIGRAGHRLGEVSKGIIIAED-RDDLLECLVLADLALEGKL 380 (814)
T ss_pred cCCceEEEEeC------------------CcHHHHHHhHhccccccccCCcccEEEEecC-HHHHHHHHHHHHHHHhCCc
Confidence 99999999855 6999999999999999754 35555544 22221110 112
Q ss_pred CcchhcccchhHHHHHHhhcccC------ccc-----CCCCCCCCChhhHHHHHHHHHH
Q 001722 677 PVPEIQRTNLGNVVLLLKSLKID------NLL-----DFDFMDPPPQENILNSMYQLWV 724 (1020)
Q Consensus 677 ~~PEI~r~~L~~vvL~lk~lgi~------~~~-----~f~~~dpP~~~~i~~al~~L~~ 724 (1020)
..++|..-+|+-+.-++.++-+. ++. .++|-+ -+.+.+...++.|..
T Consensus 381 e~~~i~~~~LDVLaq~ivg~~~~~~~~~~~~y~~vrraypy~~-L~~e~f~~v~~~l~~ 438 (814)
T COG1201 381 ERIKIPKNPLDVLAQQIVGMALEKVWEVEEAYRVVRRAYPYAD-LSREDFRLVLRYLAG 438 (814)
T ss_pred ccCCCCCcchhHHHHHHHHHHhhCcCCHHHHHHHHHhcccccc-CCHHHHHHHHHHHhh
Confidence 24556566666554444433222 111 124433 234566677777766
No 47
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.97 E-value=2.7e-29 Score=306.16 Aligned_cols=340 Identities=15% Similarity=0.143 Sum_probs=212.8
Q ss_pred CCcHHHHHHHHHHHHhCC-eEEEEecCCCchHHHHHHHHHHhcccC--CCEEEEEcccHHHHHHHHHHHHHHhccccC--
Q 001722 322 LPIFSVRDELLQVIRENQ-VVVVVGETGSGKTTQLTQYLLEDGYTT--NGIVGCTQPRRVAAMSVAKRVSEEMDTELG-- 396 (1020)
Q Consensus 322 LPi~~~q~eil~~i~~~q-~vII~gpTGSGKTtqi~q~Lle~~~~~--~~~Il~tqPrR~lA~qva~rva~e~~~~lG-- 396 (1020)
...+++|.++++.+..|+ ++++.+|||||||.++..|++...... ..++++++|||+||.|+++.+.+ ++..+.
T Consensus 14 ~~PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~~~~~~~~~rLv~~vPtReLa~Qi~~~~~~-~~k~l~~~ 92 (844)
T TIGR02621 14 YSPFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAVEIGAKVPRRLVYVVNRRTVVDQVTEEAEK-IGERLPDV 92 (844)
T ss_pred CCCCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhccccccccccceEEEeCchHHHHHHHHHHHHH-HHHHhccc
Confidence 338999999999999998 577789999999997766655321111 23677788999999999987744 443221
Q ss_pred ---------------------CEEEEEEeeee------cCCCCccEEEEchHHHHHHHhcC-------------CCCCCc
Q 001722 397 ---------------------DKVGYAIRFED------VTGPSTLIKYMTDGVLLRETLKD-------------SDLDKY 436 (1020)
Q Consensus 397 ---------------------~~VGy~ir~e~------~~s~~t~I~~~T~g~LLr~ll~d-------------~~L~~~ 436 (1020)
..|..-+.+.+ .......|+++|..++.+..+.. ..|.++
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~D~i~sr~L~~gYg~~~~~~pi~ag~L~~v 172 (844)
T TIGR02621 93 PEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTVDMIGSRLLFSGYGCGFKSRPLHAGFLGQD 172 (844)
T ss_pred chhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECHHHHcCCccccccccccccccchhhhhccc
Confidence 12221112211 11235689999987776655421 126889
Q ss_pred cEEEEeCCCcCCCCccHHHHHHHHHHhhcC---CceEEEEeccCC--HHHHHHHhCCCCe-EeecCcccce--eeeecCC
Q 001722 437 RVIVMDEAHERSLSTDVLFGILKKVVARRR---DFKLIVTSATLN--AQKFSDFFGSVPI-FHIPGRTFPV--NTLYSKT 508 (1020)
Q Consensus 437 s~IIIDEaHERs~~tD~ll~lLk~il~~r~---~lklIlmSATld--~~~f~~~f~~~pv-i~i~gr~~pV--~i~y~~~ 508 (1020)
++|||||||......+.+..+++.+. ..+ +.++++||||++ ...+...|...+. +.+....... ...|...
T Consensus 173 ~~LVLDEADLd~gF~~~l~~Il~~l~-rp~~~rprQtLLFSAT~p~ei~~l~~~~~~~p~~i~V~~~~l~a~ki~q~v~v 251 (844)
T TIGR02621 173 ALIVHDEAHLEPAFQELLKQIMNEQQ-RPPDFLPLRVVELTATSRTDGPDRTTLLSAEDYKHPVLKKRLAAKKIVKLVPP 251 (844)
T ss_pred eEEEEehhhhccccHHHHHHHHHhcc-cCcccccceEEEEecCCCccHHHHHHHHccCCceeecccccccccceEEEEec
Confidence 99999999954444444444444321 112 369999999995 4455555543333 2222111111 1122222
Q ss_pred CchhHHHHHHHHHHHHhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHH-----
Q 001722 509 PCEDYVEAAVKQAMTIHITSPPGDILIFMTGQDEIEAACFALKERMEQLISSTTREVPELLILPIYSQLPADLQA----- 583 (1020)
Q Consensus 509 ~~~dyl~~av~~~l~i~~~~~~g~ILVFl~g~~eie~l~~~L~e~l~~l~~~~~~~~~~l~vl~lhs~L~~~eq~----- 583 (1020)
+....+...+..+..+ .....+.+||||+++..++.+++.|.+. .+ ..+||.|++.+|.
T Consensus 252 ~~e~Kl~~lv~~L~~l-l~e~g~~vLVF~NTv~~Aq~L~~~L~~~-------------g~--~lLHG~m~q~dR~~~~~~ 315 (844)
T TIGR02621 252 SDEKFLSTMVKELNLL-MKDSGGAILVFCRTVKHVRKVFAKLPKE-------------KF--ELLTGTLRGAERDDLVKK 315 (844)
T ss_pred ChHHHHHHHHHHHHHH-HhhCCCcEEEEECCHHHHHHHHHHHHhc-------------CC--eEeeCCCCHHHHhhHHHH
Confidence 2222232333322222 2345688999999999999999988642 22 7899999999999
Q ss_pred HHHHHhcC----CC-------eEEEEecchhhccCCCCCeeEEEEcCCccceeccCCCCcccccccccCHHHHHHHhccc
Q 001722 584 KIFEKAKE----GT-------RKCIVATNIAETSLTVDGIFYVIDTGYGKMKVYNPKMGMDALQVFPVSRAAADQRAGRA 652 (1020)
Q Consensus 584 ~I~~~f~~----g~-------rkVIVATniaEtGItIp~V~~VID~G~~K~~~yd~~~g~~~L~~~piS~as~~QRaGRA 652 (1020)
++++.|.+ |. .+|||||+++|+||||+. .+||+ ++ .| .++|+||+||+
T Consensus 316 ~il~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~-d~VI~--------d~----------aP--~esyIQRiGRt 374 (844)
T TIGR02621 316 EIFNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISA-DHLVC--------DL----------AP--FESMQQRFGRV 374 (844)
T ss_pred HHHHHHhccccccccccccccceEEeccchhhhcccCCc-ceEEE--------CC----------CC--HHHHHHHhccc
Confidence 78888876 43 689999999999999997 66664 11 23 58999999999
Q ss_pred CCCCC--CEEEEccChhhHhhccCCCCcchhcccchhHHHHHHhhcccCc
Q 001722 653 GRTGP--GTCYRLYTESAYLNEMLPSPVPEIQRTNLGNVVLLLKSLKIDN 700 (1020)
Q Consensus 653 GR~g~--G~cyrLyt~~~~~~~m~~~~~PEI~r~~L~~vvL~lk~lgi~~ 700 (1020)
||.|. |..+.+++...-...-...--|+++...+..+.+..+-.|..+
T Consensus 375 gR~G~~~~~~i~vv~~~~~~~~~~~vY~~~~l~~t~~~L~~~~~~~~~~~ 424 (844)
T TIGR02621 375 NRFGELQACQIAVVHLDLGKDQDFDVYGKKIDKSTWSTLKKLQQLKGKNK 424 (844)
T ss_pred CCCCCCCCceEEEEeeccCCCcccCCCCHHHHHHHHHHHHHHHhccccCC
Confidence 99985 3323433321100101112246787777766665555444433
No 48
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.97 E-value=1.5e-29 Score=323.46 Aligned_cols=297 Identities=20% Similarity=0.233 Sum_probs=201.9
Q ss_pred EEecCCCchHHHHHHHHHHhccc------------CCCEEEEEcccHHHHHHHHHHHHHHh----------cc-ccCCEE
Q 001722 343 VVGETGSGKTTQLTQYLLEDGYT------------TNGIVGCTQPRRVAAMSVAKRVSEEM----------DT-ELGDKV 399 (1020)
Q Consensus 343 I~gpTGSGKTtqi~q~Lle~~~~------------~~~~Il~tqPrR~lA~qva~rva~e~----------~~-~lG~~V 399 (1020)
|++|||||||+++..++++..+. .+.+++|+.|+|+|+.++.+++...+ +. .++..|
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 58999999999998887766542 24589999999999999999875421 11 133444
Q ss_pred EEEEeeee------cCCCCccEEEEchHHHHHHHhcC--CCCCCccEEEEeCCCc-----CCCCccHHHHHHHHHHhhcC
Q 001722 400 GYAIRFED------VTGPSTLIKYMTDGVLLRETLKD--SDLDKYRVIVMDEAHE-----RSLSTDVLFGILKKVVARRR 466 (1020)
Q Consensus 400 Gy~ir~e~------~~s~~t~I~~~T~g~LLr~ll~d--~~L~~~s~IIIDEaHE-----Rs~~tD~ll~lLk~il~~r~ 466 (1020)
+....... ......+|+++||+.|...+... ..|+++++|||||+|+ |+.+....+..|+.++ ..
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~--~~ 158 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALL--HT 158 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhC--CC
Confidence 42221111 11235689999999997665432 3589999999999995 3333334444444443 34
Q ss_pred CceEEEEeccC-CHHHHHHHhCCC-CeEeec---CcccceeeeecCCCchh------------------HHHHHH-HHHH
Q 001722 467 DFKLIVTSATL-NAQKFSDFFGSV-PIFHIP---GRTFPVNTLYSKTPCED------------------YVEAAV-KQAM 522 (1020)
Q Consensus 467 ~lklIlmSATl-d~~~f~~~f~~~-pvi~i~---gr~~pV~i~y~~~~~~d------------------yl~~av-~~~l 522 (1020)
++|+|++|||+ |.+.+++|+++. |+..+. .+..++.++.......+ .+...+ ..++
T Consensus 159 ~~QrIgLSATI~n~eevA~~L~g~~pv~Iv~~~~~r~~~l~v~vp~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~~~il 238 (1490)
T PRK09751 159 SAQRIGLSATVRSASDVAAFLGGDRPVTVVNPPAMRHPQIRIVVPVANMDDVSSVASGTGEDSHAGREGSIWPYIETGIL 238 (1490)
T ss_pred CCeEEEEEeeCCCHHHHHHHhcCCCCEEEECCCCCcccceEEEEecCchhhccccccccccccchhhhhhhhHHHHHHHH
Confidence 68999999999 889999999753 432221 22233433321111000 000011 1112
Q ss_pred HHhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHHHhh--------------cccc------CCCCCeEEEEecCCCCHHHH
Q 001722 523 TIHITSPPGDILIFMTGQDEIEAACFALKERMEQLI--------------SSTT------REVPELLILPIYSQLPADLQ 582 (1020)
Q Consensus 523 ~i~~~~~~g~ILVFl~g~~eie~l~~~L~e~l~~l~--------------~~~~------~~~~~l~vl~lhs~L~~~eq 582 (1020)
.. ....+.+|||++++..++.++..|++...... +... .......+..|||+|+.++|
T Consensus 239 ~~--i~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR 316 (1490)
T PRK09751 239 DE--VLRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQR 316 (1490)
T ss_pred HH--HhcCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHH
Confidence 11 12357899999999999999999976532110 0000 00112447789999999999
Q ss_pred HHHHHHhcCCCeEEEEecchhhccCCCCCeeEEEEcCCccceeccCCCCcccccccccCHHHHHHHhcccCCCCC--CEE
Q 001722 583 AKIFEKAKEGTRKCIVATNIAETSLTVDGIFYVIDTGYGKMKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTGP--GTC 660 (1020)
Q Consensus 583 ~~I~~~f~~g~rkVIVATniaEtGItIp~V~~VID~G~~K~~~yd~~~g~~~L~~~piS~as~~QRaGRAGR~g~--G~c 660 (1020)
..|++.|++|.++|||||+++|.||||++|++||+.| .|.|.++|.||+|||||... +++
T Consensus 317 ~~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq~g------------------sP~sVas~LQRiGRAGR~~gg~s~g 378 (1490)
T PRK09751 317 AITEQALKSGELRCVVATSSLELGIDMGAVDLVIQVA------------------TPLSVASGLQRIGRAGHQVGGVSKG 378 (1490)
T ss_pred HHHHHHHHhCCceEEEeCcHHHccCCcccCCEEEEeC------------------CCCCHHHHHHHhCCCCCCCCCccEE
Confidence 9999999999999999999999999999999999855 59999999999999999743 444
Q ss_pred E
Q 001722 661 Y 661 (1020)
Q Consensus 661 y 661 (1020)
+
T Consensus 379 l 379 (1490)
T PRK09751 379 L 379 (1490)
T ss_pred E
Confidence 4
No 49
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.97 E-value=7.2e-29 Score=305.09 Aligned_cols=300 Identities=18% Similarity=0.227 Sum_probs=212.4
Q ss_pred CCCcHHHHHHHHHHHHhC------CeEEEEecCCCchHHHHHHHHHHhcccCCCEEEEEcccHHHHHHHHHHHHHHhccc
Q 001722 321 YLPIFSVRDELLQVIREN------QVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTE 394 (1020)
Q Consensus 321 ~LPi~~~q~eil~~i~~~------q~vII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~lA~qva~rva~e~~~~ 394 (1020)
...+.+.|+++++.|..+ .+++++|+||||||.++..+++.... .+.+++++.||++||.|++..+.+.+ ..
T Consensus 259 ~f~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~-~g~q~lilaPT~~LA~Q~~~~l~~l~-~~ 336 (681)
T PRK10917 259 PFELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIE-AGYQAALMAPTEILAEQHYENLKKLL-EP 336 (681)
T ss_pred CCCCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHH-cCCeEEEEeccHHHHHHHHHHHHHHH-hh
Confidence 344789999999999876 47999999999999998888776543 46789999999999999999996654 34
Q ss_pred cCCEEEEEEeeee----------cCCCCccEEEEchHHHHHHHhcCCCCCCccEEEEeCCCcCCCCccHHHHHHHHHHhh
Q 001722 395 LGDKVGYAIRFED----------VTGPSTLIKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVAR 464 (1020)
Q Consensus 395 lG~~VGy~ir~e~----------~~s~~t~I~~~T~g~LLr~ll~d~~L~~~s~IIIDEaHERs~~tD~ll~lLk~il~~ 464 (1020)
+|..|+.-..... ..+....|+++|++.+.. ...+.++++|||||+|..+... ...+...
T Consensus 337 ~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~----~v~~~~l~lvVIDE~Hrfg~~q------r~~l~~~ 406 (681)
T PRK10917 337 LGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQD----DVEFHNLGLVIIDEQHRFGVEQ------RLALREK 406 (681)
T ss_pred cCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcc----cchhcccceEEEechhhhhHHH------HHHHHhc
Confidence 5556665433322 123468899999987643 2347899999999999543221 1122223
Q ss_pred cCCceEEEEeccCCHHHHHH-HhCCCCeEee---cCcccceeeeecCCCchhHHHHHHHHHHHHhhcCCCCCEEEEcCCH
Q 001722 465 RRDFKLIVTSATLNAQKFSD-FFGSVPIFHI---PGRTFPVNTLYSKTPCEDYVEAAVKQAMTIHITSPPGDILIFMTGQ 540 (1020)
Q Consensus 465 r~~lklIlmSATld~~~f~~-~f~~~pvi~i---~gr~~pV~i~y~~~~~~dyl~~av~~~l~i~~~~~~g~ILVFl~g~ 540 (1020)
....++++||||+....++- +++...+..+ |....|+...+......+.+-..+...+ ..+++++||||..
T Consensus 407 ~~~~~iL~~SATp~prtl~~~~~g~~~~s~i~~~p~~r~~i~~~~~~~~~~~~~~~~i~~~~-----~~g~q~~v~~~~i 481 (681)
T PRK10917 407 GENPHVLVMTATPIPRTLAMTAYGDLDVSVIDELPPGRKPITTVVIPDSRRDEVYERIREEI-----AKGRQAYVVCPLI 481 (681)
T ss_pred CCCCCEEEEeCCCCHHHHHHHHcCCCceEEEecCCCCCCCcEEEEeCcccHHHHHHHHHHHH-----HcCCcEEEEEccc
Confidence 34678999999997665543 3343333222 2223356655544333222212222111 3467899999976
Q ss_pred HHHH--------HHHHHHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHHHhcCCCeEEEEecchhhccCCCCCe
Q 001722 541 DEIE--------AACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAETSLTVDGI 612 (1020)
Q Consensus 541 ~eie--------~l~~~L~e~l~~l~~~~~~~~~~l~vl~lhs~L~~~eq~~I~~~f~~g~rkVIVATniaEtGItIp~V 612 (1020)
++.+ .+++.|.+. .+.+.+..+||+|+.++|..+++.|.+|..+|||||+++|+|||+|++
T Consensus 482 e~s~~l~~~~~~~~~~~L~~~-----------~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GiDip~v 550 (681)
T PRK10917 482 EESEKLDLQSAEETYEELQEA-----------FPELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATTVIEVGVDVPNA 550 (681)
T ss_pred ccccchhHHHHHHHHHHHHHH-----------CCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECcceeeCcccCCC
Confidence 5433 333333321 234789999999999999999999999999999999999999999999
Q ss_pred eEEEEcCCccceeccCCCCcccccccccCHHHHHHHhcccCCCC-CCEEEEccC
Q 001722 613 FYVIDTGYGKMKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTG-PGTCYRLYT 665 (1020)
Q Consensus 613 ~~VID~G~~K~~~yd~~~g~~~L~~~piS~as~~QRaGRAGR~g-~G~cyrLyt 665 (1020)
++||. ||+. ..+.+.+.||+||+||.| +|.||.+++
T Consensus 551 ~~VIi--------~~~~---------r~gls~lhQ~~GRvGR~g~~g~~ill~~ 587 (681)
T PRK10917 551 TVMVI--------ENAE---------RFGLAQLHQLRGRVGRGAAQSYCVLLYK 587 (681)
T ss_pred cEEEE--------eCCC---------CCCHHHHHHHhhcccCCCCceEEEEEEC
Confidence 99997 5532 124578999999999998 699999996
No 50
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.97 E-value=2e-29 Score=288.29 Aligned_cols=291 Identities=20% Similarity=0.200 Sum_probs=192.9
Q ss_pred eEEEEecCCCchHHHHHHHHHHhccc-CCCEEEEEcccHHHHHHHHHHHHHHhccccCCEEEEE------Eee-----ee
Q 001722 340 VVVVVGETGSGKTTQLTQYLLEDGYT-TNGIVGCTQPRRVAAMSVAKRVSEEMDTELGDKVGYA------IRF-----ED 407 (1020)
Q Consensus 340 ~vII~gpTGSGKTtqi~q~Lle~~~~-~~~~Il~tqPrR~lA~qva~rva~e~~~~lG~~VGy~------ir~-----e~ 407 (1020)
+++|+||||||||++++++++..... ...+++|+.|+++++.|+++++...++..+|...|.. ... +.
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~~~~~~ii~v~P~~~L~~q~~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKSQKADRVIIALPTRATINAMYRRAKELFGSNLGLLHSSSSFKRIKEMGDSEEFEH 80 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhhCCCCeEEEEeehHHHHHHHHHHHHHHhCcccEEeeccHHHHHHhccCCchhHHH
Confidence 47999999999999999998876432 3468999999999999999999887765433211110 000 00
Q ss_pred ---------cCCCCccEEEEchHHHHHHHhcCCC-------CCCccEEEEeCCCcCCCC-ccHHHHHHHHHHhhcCCceE
Q 001722 408 ---------VTGPSTLIKYMTDGVLLRETLKDSD-------LDKYRVIVMDEAHERSLS-TDVLFGILKKVVARRRDFKL 470 (1020)
Q Consensus 408 ---------~~s~~t~I~~~T~g~LLr~ll~d~~-------L~~~s~IIIDEaHERs~~-tD~ll~lLk~il~~r~~lkl 470 (1020)
.......|+++|++.++..+..... .-.+++|||||||..... .+.+..+++.+. ..+.++
T Consensus 81 ~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~l~~~l~~l~--~~~~~~ 158 (358)
T TIGR01587 81 LFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLALILAVLEVLK--DNDVPI 158 (358)
T ss_pred HHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHHHHHHHHHHH--HcCCCE
Confidence 0012356999999999887665211 113489999999964322 234444444433 347899
Q ss_pred EEEeccCCHHHHHHHhCCCCeEeecCccccee------ee-ec-CCCchhHHHHHHHHHHHHhhcCCCCCEEEEcCCHHH
Q 001722 471 IVTSATLNAQKFSDFFGSVPIFHIPGRTFPVN------TL-YS-KTPCEDYVEAAVKQAMTIHITSPPGDILIFMTGQDE 542 (1020)
Q Consensus 471 IlmSATld~~~f~~~f~~~pvi~i~gr~~pV~------i~-y~-~~~~~dyl~~av~~~l~i~~~~~~g~ILVFl~g~~e 542 (1020)
|+||||++ +.+.+|+........+. .++.. .+ +. .......-...+..++.. ...++++||||+++++
T Consensus 159 i~~SATlp-~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lVf~~t~~~ 234 (358)
T TIGR01587 159 LLMSATLP-KFLKEYAEKIGYVEFNE-PLDLKEERRFERHRFIKIESDKVGEISSLERLLEF--IKKGGKIAIIVNTVDR 234 (358)
T ss_pred EEEecCch-HHHHHHHhcCCCccccc-CCCCccccccccccceeeccccccCHHHHHHHHHH--hhCCCeEEEEECCHHH
Confidence 99999996 45666664322111110 01100 00 00 000000001112222221 2346899999999999
Q ss_pred HHHHHHHHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHH----HHHHhcCCCeEEEEecchhhccCCCCCeeEEEEc
Q 001722 543 IEAACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAK----IFEKAKEGTRKCIVATNIAETSLTVDGIFYVIDT 618 (1020)
Q Consensus 543 ie~l~~~L~e~l~~l~~~~~~~~~~l~vl~lhs~L~~~eq~~----I~~~f~~g~rkVIVATniaEtGItIp~V~~VID~ 618 (1020)
++.++..|.+.. +...+.++||+++..+|.+ +++.|++|..+|||||+++++||||+ +++||.
T Consensus 235 ~~~~~~~L~~~~-----------~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~vi~- 301 (358)
T TIGR01587 235 AQEFYQQLKENA-----------PEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS-ADVMIT- 301 (358)
T ss_pred HHHHHHHHHhhc-----------CCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccC-CCEEEE-
Confidence 999998887531 2356999999999999976 48899999999999999999999997 677775
Q ss_pred CCccceeccCCCCcccccccccCHHHHHHHhcccCCCCC-----CEEEEccChhh
Q 001722 619 GYGKMKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTGP-----GTCYRLYTESA 668 (1020)
Q Consensus 619 G~~K~~~yd~~~g~~~L~~~piS~as~~QRaGRAGR~g~-----G~cyrLyt~~~ 668 (1020)
.+.+..+|.||+||+||.|. |.+|.++....
T Consensus 302 -------------------~~~~~~~~iqr~GR~gR~g~~~~~~~~~~v~~~~~~ 337 (358)
T TIGR01587 302 -------------------ELAPIDSLIQRLGRLHRYGRKNGENFEVYIITIAPE 337 (358)
T ss_pred -------------------cCCCHHHHHHHhccccCCCCCCCCCCeEEEEeecCC
Confidence 24557899999999999873 37787776543
No 51
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=3.2e-29 Score=263.67 Aligned_cols=310 Identities=17% Similarity=0.245 Sum_probs=224.2
Q ss_pred cHHHHHHHHHHHHhCCeEEEEecCCCchHHHHHHHHHHhcc--cCCCEEEEEcccHHHHHHHHHHHHHHhccccCCEEEE
Q 001722 324 IFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGY--TTNGIVGCTQPRRVAAMSVAKRVSEEMDTELGDKVGY 401 (1020)
Q Consensus 324 i~~~q~eil~~i~~~q~vII~gpTGSGKTtqi~q~Lle~~~--~~~~~Il~tqPrR~lA~qva~rva~e~~~~lG~~VGy 401 (1020)
....|+.++..|..+++||..+..|+|||..+..-++...- .....++|+.|+|+||.|+.+.+.. +|...+..+--
T Consensus 50 PS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~~~r~tQ~lilsPTRELa~Qi~~vi~a-lg~~mnvq~ha 128 (400)
T KOG0328|consen 50 PSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDISVRETQALILSPTRELAVQIQKVILA-LGDYMNVQCHA 128 (400)
T ss_pred chHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeecccccceeeEEEecChHHHHHHHHHHHHH-hcccccceEEE
Confidence 45678888999999999999999999999876554443321 1124799999999999999988743 44443333322
Q ss_pred EEeeee------cCCCCccEEEEchHHHHHHHhcCC-CCCCccEEEEeCCCcCCCCccHHHHHHHHHHhhcCCceEEEEe
Q 001722 402 AIRFED------VTGPSTLIKYMTDGVLLRETLKDS-DLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTS 474 (1020)
Q Consensus 402 ~ir~e~------~~s~~t~I~~~T~g~LLr~ll~d~-~L~~~s~IIIDEaHERs~~tD~ll~lLk~il~~r~~lklIlmS 474 (1020)
.+.+.+ ...-+.+++..|||..+..+.... .-..+.++|+|||+| .++-.+--.+........|+.+++++|
T Consensus 129 cigg~n~gedikkld~G~hvVsGtPGrv~dmikr~~L~tr~vkmlVLDEaDe-mL~kgfk~Qiydiyr~lp~~~Qvv~~S 207 (400)
T KOG0328|consen 129 CIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKRRSLRTRAVKMLVLDEADE-MLNKGFKEQIYDIYRYLPPGAQVVLVS 207 (400)
T ss_pred EecCCccchhhhhhcccceEeeCCCchHHHHHHhccccccceeEEEeccHHH-HHHhhHHHHHHHHHHhCCCCceEEEEe
Confidence 222222 223456789999999998875443 356789999999996 222222222222222345699999999
Q ss_pred ccCC--HHHHHHHhCCCCeEeecCc-ccc---eeeeecCCCchhHHHHHHHHHHHHhhcCCCCCEEEEcCCHHHHHHHHH
Q 001722 475 ATLN--AQKFSDFFGSVPIFHIPGR-TFP---VNTLYSKTPCEDYVEAAVKQAMTIHITSPPGDILIFMTGQDEIEAACF 548 (1020)
Q Consensus 475 ATld--~~~f~~~f~~~pvi~i~gr-~~p---V~i~y~~~~~~dyl~~av~~~l~i~~~~~~g~ILVFl~g~~eie~l~~ 548 (1020)
||++ .-...++|...|+-....| ..+ ++.+|.....++. ...+...++....-.+.+|||+++..++.+.+
T Consensus 208 ATlp~eilemt~kfmtdpvrilvkrdeltlEgIKqf~v~ve~Eew---KfdtLcdLYd~LtItQavIFcnTk~kVdwLte 284 (400)
T KOG0328|consen 208 ATLPHEILEMTEKFMTDPVRILVKRDELTLEGIKQFFVAVEKEEW---KFDTLCDLYDTLTITQAVIFCNTKRKVDWLTE 284 (400)
T ss_pred ccCcHHHHHHHHHhcCCceeEEEecCCCchhhhhhheeeechhhh---hHhHHHHHhhhhehheEEEEecccchhhHHHH
Confidence 9995 4445567766665333222 122 3345544333332 22333344433334578999999999988877
Q ss_pred HHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHHHhcCCCeEEEEecchhhccCCCCCeeEEEEcCCccceeccC
Q 001722 549 ALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAETSLTVDGIFYVIDTGYGKMKVYNP 628 (1020)
Q Consensus 549 ~L~e~l~~l~~~~~~~~~~l~vl~lhs~L~~~eq~~I~~~f~~g~rkVIVATniaEtGItIp~V~~VID~G~~K~~~yd~ 628 (1020)
.+.+ .++.|..+||.|++++|.+|...|+.|..+|+++|++.++|+|+|.|..||| ||
T Consensus 285 km~~-------------~nftVssmHGDm~qkERd~im~dFRsg~SrvLitTDVwaRGiDv~qVslviN--------YD- 342 (400)
T KOG0328|consen 285 KMRE-------------ANFTVSSMHGDMEQKERDKIMNDFRSGKSRVLITTDVWARGIDVQQVSLVIN--------YD- 342 (400)
T ss_pred HHHh-------------hCceeeeccCCcchhHHHHHHHHhhcCCceEEEEechhhccCCcceeEEEEe--------cC-
Confidence 7765 3788999999999999999999999999999999999999999999999999 77
Q ss_pred CCCcccccccccCHHHHHHHhcccCCCCC-CEEEEccChhhH
Q 001722 629 KMGMDALQVFPVSRAAADQRAGRAGRTGP-GTCYRLYTESAY 669 (1020)
Q Consensus 629 ~~g~~~L~~~piS~as~~QRaGRAGR~g~-G~cyrLyt~~~~ 669 (1020)
.|.....|+||+||.||.|. |.++.+...++.
T Consensus 343 ---------LP~nre~YIHRIGRSGRFGRkGvainFVk~~d~ 375 (400)
T KOG0328|consen 343 ---------LPNNRELYIHRIGRSGRFGRKGVAINFVKSDDL 375 (400)
T ss_pred ---------CCccHHHHhhhhccccccCCcceEEEEecHHHH
Confidence 79999999999999999995 999999998775
No 52
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.97 E-value=1.6e-28 Score=299.98 Aligned_cols=307 Identities=17% Similarity=0.224 Sum_probs=210.4
Q ss_pred HHHcCCC--cHHHHHHHHHHHHhC------CeEEEEecCCCchHHHHHHHHHHhcccCCCEEEEEcccHHHHHHHHHHHH
Q 001722 317 EQRQYLP--IFSVRDELLQVIREN------QVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVS 388 (1020)
Q Consensus 317 ~~R~~LP--i~~~q~eil~~i~~~------q~vII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~lA~qva~rva 388 (1020)
+....|| +++.|++++..|..+ .+.+|+|+||||||.++..+++... ..+.+++++.|+++||.|+++.+.
T Consensus 227 ~~~~~lpf~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~-~~g~qvlilaPT~~LA~Q~~~~~~ 305 (630)
T TIGR00643 227 KFLASLPFKLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAI-EAGYQVALMAPTEILAEQHYNSLR 305 (630)
T ss_pred HHHHhCCCCCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHH-HcCCcEEEECCHHHHHHHHHHHHH
Confidence 3344455 678999999999875 3689999999999999877776654 346689999999999999999997
Q ss_pred HHhccccCCEEEEEEeeee----------cCCCCccEEEEchHHHHHHHhcCCCCCCccEEEEeCCCcCCCCccHHHHHH
Q 001722 389 EEMDTELGDKVGYAIRFED----------VTGPSTLIKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGIL 458 (1020)
Q Consensus 389 ~e~~~~lG~~VGy~ir~e~----------~~s~~t~I~~~T~g~LLr~ll~d~~L~~~s~IIIDEaHERs~~tD~ll~lL 458 (1020)
+.+. .+|..++....... ..+....|+++|++.+.. ...+.++++|||||+|..+.... ..+
T Consensus 306 ~l~~-~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~----~~~~~~l~lvVIDEaH~fg~~qr---~~l 377 (630)
T TIGR00643 306 NLLA-PLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQE----KVEFKRLALVIIDEQHRFGVEQR---KKL 377 (630)
T ss_pred HHhc-ccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhc----cccccccceEEEechhhccHHHH---HHH
Confidence 6543 34555544322211 123356899999987753 33578999999999996443221 112
Q ss_pred HHHHhhcCCceEEEEeccCCHHHHHH-HhCCCCe---EeecCcccceeeeecCCCchhHHHHHHHHHHHHhhcCCCCCEE
Q 001722 459 KKVVARRRDFKLIVTSATLNAQKFSD-FFGSVPI---FHIPGRTFPVNTLYSKTPCEDYVEAAVKQAMTIHITSPPGDIL 534 (1020)
Q Consensus 459 k~il~~r~~lklIlmSATld~~~f~~-~f~~~pv---i~i~gr~~pV~i~y~~~~~~dyl~~av~~~l~i~~~~~~g~IL 534 (1020)
..........++|+||||+....++. .++...+ -..|....|+...+...... ...+..+.. .. ..++.++
T Consensus 378 ~~~~~~~~~~~~l~~SATp~prtl~l~~~~~l~~~~i~~~p~~r~~i~~~~~~~~~~---~~~~~~i~~-~l-~~g~q~~ 452 (630)
T TIGR00643 378 REKGQGGFTPHVLVMSATPIPRTLALTVYGDLDTSIIDELPPGRKPITTVLIKHDEK---DIVYEFIEE-EI-AKGRQAY 452 (630)
T ss_pred HHhcccCCCCCEEEEeCCCCcHHHHHHhcCCcceeeeccCCCCCCceEEEEeCcchH---HHHHHHHHH-HH-HhCCcEE
Confidence 11111112578999999986555443 2232222 12233334666655443322 222221111 11 2357899
Q ss_pred EEcCCHHHH--------HHHHHHHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHHHhcCCCeEEEEecchhhcc
Q 001722 535 IFMTGQDEI--------EAACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAETS 606 (1020)
Q Consensus 535 VFl~g~~ei--------e~l~~~L~e~l~~l~~~~~~~~~~l~vl~lhs~L~~~eq~~I~~~f~~g~rkVIVATniaEtG 606 (1020)
|||+..++. +.+++.|.+. .+++.|..+||+|+.++|..+++.|.+|..+|||||+++|+|
T Consensus 453 v~~~~i~~s~~~~~~~a~~~~~~L~~~-----------~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~G 521 (630)
T TIGR00643 453 VVYPLIEESEKLDLKAAEALYERLKKA-----------FPKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATTVIEVG 521 (630)
T ss_pred EEEccccccccchHHHHHHHHHHHHhh-----------CCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECceeecC
Confidence 999987543 3333333321 256789999999999999999999999999999999999999
Q ss_pred CCCCCeeEEEEcCCccceeccCCCCcccccccccCHHHHHHHhcccCCCC-CCEEEEccC
Q 001722 607 LTVDGIFYVIDTGYGKMKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTG-PGTCYRLYT 665 (1020)
Q Consensus 607 ItIp~V~~VID~G~~K~~~yd~~~g~~~L~~~piS~as~~QRaGRAGR~g-~G~cyrLyt 665 (1020)
||+|++++||. ||+. ..+.+++.||+|||||.| +|.||.++.
T Consensus 522 vDiP~v~~VIi--------~~~~---------r~gls~lhQ~~GRvGR~g~~g~~il~~~ 564 (630)
T TIGR00643 522 VDVPNATVMVI--------EDAE---------RFGLSQLHQLRGRVGRGDHQSYCLLVYK 564 (630)
T ss_pred cccCCCcEEEE--------eCCC---------cCCHHHHHHHhhhcccCCCCcEEEEEEC
Confidence 99999999996 4421 235678999999999998 699999983
No 53
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.97 E-value=1.5e-28 Score=312.77 Aligned_cols=298 Identities=18% Similarity=0.205 Sum_probs=210.8
Q ss_pred CcHHHHHHHHHHHHhC------CeEEEEecCCCchHHHHHHHHHHhcccCCCEEEEEcccHHHHHHHHHHHHHHhccccC
Q 001722 323 PIFSVRDELLQVIREN------QVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELG 396 (1020)
Q Consensus 323 Pi~~~q~eil~~i~~~------q~vII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~lA~qva~rva~e~~~~lG 396 (1020)
...+.|.++++.+..+ .+++++|+||||||.++...++... ..+.+++|++||++||.|++..+.+.++. .+
T Consensus 600 ~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~-~~g~qvlvLvPT~eLA~Q~~~~f~~~~~~-~~ 677 (1147)
T PRK10689 600 ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAV-ENHKQVAVLVPTTLLAQQHYDNFRDRFAN-WP 677 (1147)
T ss_pred CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHH-HcCCeEEEEeCcHHHHHHHHHHHHHhhcc-CC
Confidence 4678999999999887 8999999999999998765554432 34678999999999999999999765542 23
Q ss_pred CEEEEEEeeeec----------CCCCccEEEEchHHHHHHHhcCCCCCCccEEEEeCCCcCCCCccHHHHHHHHHHhhcC
Q 001722 397 DKVGYAIRFEDV----------TGPSTLIKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRR 466 (1020)
Q Consensus 397 ~~VGy~ir~e~~----------~s~~t~I~~~T~g~LLr~ll~d~~L~~~s~IIIDEaHERs~~tD~ll~lLk~il~~r~ 466 (1020)
..++...++.+. .....+|+++|++.|. .+..+.++++|||||+|..+.. ....+....+
T Consensus 678 v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~----~~v~~~~L~lLVIDEahrfG~~------~~e~lk~l~~ 747 (1147)
T PRK10689 678 VRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQ----SDVKWKDLGLLIVDEEHRFGVR------HKERIKAMRA 747 (1147)
T ss_pred ceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHh----CCCCHhhCCEEEEechhhcchh------HHHHHHhcCC
Confidence 344433333221 1235689999997542 3345789999999999964322 1222223456
Q ss_pred CceEEEEeccCCHHHHH--HH-hCCCCeEeecC-cccceeeeecCCCchhHHHHHHHHHHHHhhcCCCCCEEEEcCCHHH
Q 001722 467 DFKLIVTSATLNAQKFS--DF-FGSVPIFHIPG-RTFPVNTLYSKTPCEDYVEAAVKQAMTIHITSPPGDILIFMTGQDE 542 (1020)
Q Consensus 467 ~lklIlmSATld~~~f~--~~-f~~~pvi~i~g-r~~pV~i~y~~~~~~dyl~~av~~~l~i~~~~~~g~ILVFl~g~~e 542 (1020)
+.++++||||+....+. .. +.+..++..+. ...++..++..... ..+..+ ++. .. ..+|.++|||++.+.
T Consensus 748 ~~qvLl~SATpiprtl~l~~~gl~d~~~I~~~p~~r~~v~~~~~~~~~-~~~k~~---il~-el-~r~gqv~vf~n~i~~ 821 (1147)
T PRK10689 748 DVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDS-LVVREA---ILR-EI-LRGGQVYYLYNDVEN 821 (1147)
T ss_pred CCcEEEEcCCCCHHHHHHHHhhCCCcEEEecCCCCCCCceEEEEecCc-HHHHHH---HHH-HH-hcCCeEEEEECCHHH
Confidence 88999999998654332 22 23333444432 22455544332111 111111 111 11 136899999999999
Q ss_pred HHHHHHHHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHHHhcCCCeEEEEecchhhccCCCCCeeEEEEcCCcc
Q 001722 543 IEAACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAETSLTVDGIFYVIDTGYGK 622 (1020)
Q Consensus 543 ie~l~~~L~e~l~~l~~~~~~~~~~l~vl~lhs~L~~~eq~~I~~~f~~g~rkVIVATniaEtGItIp~V~~VID~G~~K 622 (1020)
++.+++.|.+. .++..+..+||+|+.++|.+++..|.+|+.+|||||+++++|||||+|++||-
T Consensus 822 ie~la~~L~~~-----------~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~v~~VIi----- 885 (1147)
T PRK10689 822 IQKAAERLAEL-----------VPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIII----- 885 (1147)
T ss_pred HHHHHHHHHHh-----------CCCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhhcccccccCCEEEE-----
Confidence 99999888753 25678899999999999999999999999999999999999999999999983
Q ss_pred ceeccCCCCcccccccccCHHHHHHHhcccCCCC-CCEEEEccCh
Q 001722 623 MKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTG-PGTCYRLYTE 666 (1020)
Q Consensus 623 ~~~yd~~~g~~~L~~~piS~as~~QRaGRAGR~g-~G~cyrLyt~ 666 (1020)
+++. ..+.++|.||+||+||.| .|.||.++..
T Consensus 886 ---~~ad---------~fglaq~~Qr~GRvGR~g~~g~a~ll~~~ 918 (1147)
T PRK10689 886 ---ERAD---------HFGLAQLHQLRGRVGRSHHQAYAWLLTPH 918 (1147)
T ss_pred ---ecCC---------CCCHHHHHHHhhccCCCCCceEEEEEeCC
Confidence 1110 123467999999999998 5999998864
No 54
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.96 E-value=1e-28 Score=269.88 Aligned_cols=314 Identities=21% Similarity=0.222 Sum_probs=238.4
Q ss_pred CCCcHHHHHHHHHHHHhCCeEEEEecCCCchHHHHHHHHHHhcc--------cCCCEEEEEcccHHHHHHHHHHHHHHhc
Q 001722 321 YLPIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGY--------TTNGIVGCTQPRRVAAMSVAKRVSEEMD 392 (1020)
Q Consensus 321 ~LPi~~~q~eil~~i~~~q~vII~gpTGSGKTtqi~q~Lle~~~--------~~~~~Il~tqPrR~lA~qva~rva~e~~ 392 (1020)
.-...+.|.+++..+++++++|.++.||+|||+.++.+-+.+.. ..+..++++.|||+||.++.-.+.++.-
T Consensus 240 FqKPtPIqSQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~lvl~ptreLalqie~e~~kysy 319 (629)
T KOG0336|consen 240 FQKPTPIQSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLVLTPTRELALQIEGEVKKYSY 319 (629)
T ss_pred CCCCCcchhcccceeecCcceEEEEecCCCcCHHHhccceeeeeccchhhhccCCCceEEEeccHHHHHHHHhHHhHhhh
Confidence 33445678899999999999999999999999987654332211 1234789999999999999887766543
Q ss_pred cccCCEEEEEE--eeee--cCCCCccEEEEchHHHHHHHhcC-CCCCCccEEEEeCCCcCCCCccHHHHHHHHHHhhcCC
Q 001722 393 TELGDKVGYAI--RFED--VTGPSTLIKYMTDGVLLRETLKD-SDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRD 467 (1020)
Q Consensus 393 ~~lG~~VGy~i--r~e~--~~s~~t~I~~~T~g~LLr~ll~d-~~L~~~s~IIIDEaHERs~~tD~ll~lLk~il~~r~~ 467 (1020)
..+-..+-|+. |.+. ....+..|+++|||.|....+.+ -.|..+.++|||||+ |.+++.|-..+-+.++..||+
T Consensus 320 ng~ksvc~ygggnR~eqie~lkrgveiiiatPgrlndL~~~n~i~l~siTYlVlDEAD-rMLDMgFEpqIrkilldiRPD 398 (629)
T KOG0336|consen 320 NGLKSVCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMDNVINLASITYLVLDEAD-RMLDMGFEPQIRKILLDIRPD 398 (629)
T ss_pred cCcceEEEecCCCchhHHHHHhcCceEEeeCCchHhhhhhcCeeeeeeeEEEEecchh-hhhcccccHHHHHHhhhcCCc
Confidence 32222233322 2221 23456789999999998877655 358999999999999 999999999999999999999
Q ss_pred ceEEEEeccCC--HHHHHHHhCCCCeEeecCcc-----cceeeeecCCCchhHHHHHHHHHHHHhhcCCCCCEEEEcCCH
Q 001722 468 FKLIVTSATLN--AQKFSDFFGSVPIFHIPGRT-----FPVNTLYSKTPCEDYVEAAVKQAMTIHITSPPGDILIFMTGQ 540 (1020)
Q Consensus 468 lklIlmSATld--~~~f~~~f~~~pvi~i~gr~-----~pV~i~y~~~~~~dyl~~av~~~l~i~~~~~~g~ILVFl~g~ 540 (1020)
-+.|++|||.. +..++.-+...|++...|.. ..|+..+.-+...+.+ ..+...+.- ..+..++||||..+
T Consensus 399 RqtvmTSATWP~~VrrLa~sY~Kep~~v~vGsLdL~a~~sVkQ~i~v~~d~~k~-~~~~~f~~~--ms~ndKvIiFv~~K 475 (629)
T KOG0336|consen 399 RQTVMTSATWPEGVRRLAQSYLKEPMIVYVGSLDLVAVKSVKQNIIVTTDSEKL-EIVQFFVAN--MSSNDKVIIFVSRK 475 (629)
T ss_pred ceeeeecccCchHHHHHHHHhhhCceEEEecccceeeeeeeeeeEEecccHHHH-HHHHHHHHh--cCCCceEEEEEech
Confidence 99999999994 66777655556777666654 2344344333333333 222222222 23467899999887
Q ss_pred HHHHHHHHHHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHHHhcCCCeEEEEecchhhccCCCCCeeEEEEcCC
Q 001722 541 DEIEAACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAETSLTVDGIFYVIDTGY 620 (1020)
Q Consensus 541 ~eie~l~~~L~e~l~~l~~~~~~~~~~l~vl~lhs~L~~~eq~~I~~~f~~g~rkVIVATniaEtGItIp~V~~VID~G~ 620 (1020)
.-++.+..-| ...++..-.+||+-.+.+|+..++.|+.|.++|||||++|.+|||+++|++|+|
T Consensus 476 ~~AD~LSSd~-------------~l~gi~~q~lHG~r~Q~DrE~al~~~ksG~vrILvaTDlaSRGlDv~DiTHV~N--- 539 (629)
T KOG0336|consen 476 VMADHLSSDF-------------CLKGISSQSLHGNREQSDREMALEDFKSGEVRILVATDLASRGLDVPDITHVYN--- 539 (629)
T ss_pred hhhhhccchh-------------hhcccchhhccCChhhhhHHHHHHhhhcCceEEEEEechhhcCCCchhcceeec---
Confidence 6655544333 234777888999999999999999999999999999999999999999999999
Q ss_pred ccceeccCCCCcccccccccCHHHHHHHhcccCCCCC-CEEEEccChhhH
Q 001722 621 GKMKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTGP-GTCYRLYTESAY 669 (1020)
Q Consensus 621 ~K~~~yd~~~g~~~L~~~piS~as~~QRaGRAGR~g~-G~cyrLyt~~~~ 669 (1020)
|| +|.....|.||+||+||+|. |..+.+++..+.
T Consensus 540 -----yD----------FP~nIeeYVHRvGrtGRaGr~G~sis~lt~~D~ 574 (629)
T KOG0336|consen 540 -----YD----------FPRNIEEYVHRVGRTGRAGRTGTSISFLTRNDW 574 (629)
T ss_pred -----cC----------CCccHHHHHHHhcccccCCCCcceEEEEehhhH
Confidence 77 79999999999999999995 999999998775
No 55
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=99.96 E-value=2e-27 Score=283.94 Aligned_cols=438 Identities=19% Similarity=0.233 Sum_probs=290.8
Q ss_pred HHHHHHHHHH-HhCCeEEEEecCCCchHHHHHHHHHHhccc---------CCCEEEEEcccHHHHHHHHHHHHHHhcccc
Q 001722 326 SVRDELLQVI-RENQVVVVVGETGSGKTTQLTQYLLEDGYT---------TNGIVGCTQPRRVAAMSVAKRVSEEMDTEL 395 (1020)
Q Consensus 326 ~~q~eil~~i-~~~q~vII~gpTGSGKTtqi~q~Lle~~~~---------~~~~Il~tqPrR~lA~qva~rva~e~~~~l 395 (1020)
..|.++.+.+ ..|.|+|||||||||||-.+.+.++..... .+-+|+++.|.++||.+++..+.+.++ .+
T Consensus 113 ~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~kkl~-~~ 191 (1230)
T KOG0952|consen 113 RIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFSKKLA-PL 191 (1230)
T ss_pred HHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHHhhhcc-cc
Confidence 3455555444 578999999999999999887777764332 234899999999999999999887764 34
Q ss_pred CCEEEEEEeeeecC----CCCccEEEEchHH---HHHHHhcC-CCCCCccEEEEeCCC----cCCCCccHHHHHHHHHHh
Q 001722 396 GDKVGYAIRFEDVT----GPSTLIKYMTDGV---LLRETLKD-SDLDKYRVIVMDEAH----ERSLSTDVLFGILKKVVA 463 (1020)
Q Consensus 396 G~~VGy~ir~e~~~----s~~t~I~~~T~g~---LLr~ll~d-~~L~~~s~IIIDEaH----ERs~~tD~ll~lLk~il~ 463 (1020)
|..|+- ..++... -..|+|++.||+- +.|....| ..++.+.+|||||+| +|+.-.+.+.+.+.+...
T Consensus 192 gi~v~E-LTGD~ql~~tei~~tqiiVTTPEKwDvvTRk~~~d~~l~~~V~LviIDEVHlLhd~RGpvlEtiVaRtlr~ve 270 (1230)
T KOG0952|consen 192 GISVRE-LTGDTQLTKTEIADTQIIVTTPEKWDVVTRKSVGDSALFSLVRLVIIDEVHLLHDDRGPVLETIVARTLRLVE 270 (1230)
T ss_pred cceEEE-ecCcchhhHHHHHhcCEEEecccceeeeeeeeccchhhhhheeeEEeeeehhhcCcccchHHHHHHHHHHHHH
Confidence 555542 1222222 2478999999984 34444433 346789999999999 588777766665554443
Q ss_pred -hcCCceEEEEeccC-CHHHHHHHhCCC---CeEeecCcccce--eeeecCCCch--hHHHHH-----HHHHHHHhhcCC
Q 001722 464 -RRRDFKLIVTSATL-NAQKFSDFFGSV---PIFHIPGRTFPV--NTLYSKTPCE--DYVEAA-----VKQAMTIHITSP 529 (1020)
Q Consensus 464 -~r~~lklIlmSATl-d~~~f~~~f~~~---pvi~i~gr~~pV--~i~y~~~~~~--dyl~~a-----v~~~l~i~~~~~ 529 (1020)
....+|||++|||+ |.+.++.|++-. .++...++-.|| +..+...+.. +..... ...+...+ ..
T Consensus 271 ssqs~IRivgLSATlPN~eDvA~fL~vn~~~glfsFd~~yRPvpL~~~~iG~k~~~~~~~~~~~d~~~~~kv~e~~--~~ 348 (1230)
T KOG0952|consen 271 SSQSMIRIVGLSATLPNYEDVARFLRVNPYAGLFSFDQRYRPVPLTQGFIGIKGKKNRQQKKNIDEVCYDKVVEFL--QE 348 (1230)
T ss_pred hhhhheEEEEeeccCCCHHHHHHHhcCCCccceeeecccccccceeeeEEeeecccchhhhhhHHHHHHHHHHHHH--Hc
Confidence 45579999999999 899999999853 356666555554 3333322221 111111 22222222 35
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHHHHHHhhccccCC-CC--C-------eEEEEecCCCCHHHHHHHHHHhcCCCeEEEEe
Q 001722 530 PGDILIFMTGQDEIEAACFALKERMEQLISSTTRE-VP--E-------LLILPIYSQLPADLQAKIFEKAKEGTRKCIVA 599 (1020)
Q Consensus 530 ~g~ILVFl~g~~eie~l~~~L~e~l~~l~~~~~~~-~~--~-------l~vl~lhs~L~~~eq~~I~~~f~~g~rkVIVA 599 (1020)
+.++||||.++.+.-.++..|.+..........-. .+ + ..+..+|+||..++|..+...|..|.++|++|
T Consensus 349 g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~F~~G~i~vL~c 428 (1230)
T KOG0952|consen 349 GHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVEKEFKEGHIKVLCC 428 (1230)
T ss_pred CCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHHHHHhcCCceEEEe
Confidence 77999999999999999999987654432211100 11 1 35677999999999999999999999999999
Q ss_pred cchhhccCCCCCeeEEEEcCCccceeccCCCCcccccccccCHHHHHHHhcccCCCC---CCEEEEccChhh--HhhccC
Q 001722 600 TNIAETSLTVDGIFYVIDTGYGKMKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTG---PGTCYRLYTESA--YLNEML 674 (1020)
Q Consensus 600 TniaEtGItIp~V~~VID~G~~K~~~yd~~~g~~~L~~~piS~as~~QRaGRAGR~g---~G~cyrLyt~~~--~~~~m~ 674 (1020)
|.+++.|+++|+--++| -.+.+||++.|-- .-.+.....|..|||||.+ .|..+.+-+.+. +...|.
T Consensus 429 TaTLAwGVNLPA~aViI----KGT~~ydsskg~f----~dlgilDVlQifGRAGRPqFd~~G~giIiTt~dkl~~Y~sLl 500 (1230)
T KOG0952|consen 429 TATLAWGVNLPAYAVII----KGTQVYDSSKGSF----VDLGILDVLQIFGRAGRPQFDSSGEGIIITTRDKLDHYESLL 500 (1230)
T ss_pred cceeeeccCCcceEEEe----cCCcccccccCce----eeehHHHHHHHHhccCCCCCCCCceEEEEecccHHHHHHHHH
Confidence 99999999999877777 3578999977632 3456677899999999987 476666655432 222233
Q ss_pred CCCcc---------------hhcc---cchhHHHHHHhh------cccCcc---cCCCCCC-CCCh-----hhHHHHHHH
Q 001722 675 PSPVP---------------EIQR---TNLGNVVLLLKS------LKIDNL---LDFDFMD-PPPQ-----ENILNSMYQ 721 (1020)
Q Consensus 675 ~~~~P---------------EI~r---~~L~~vvL~lk~------lgi~~~---~~f~~~d-pP~~-----~~i~~al~~ 721 (1020)
...-| ||-- ++++..|=.|+. |+-+.. .....+. -|-. +.+..++..
T Consensus 501 ~~~~piES~~~~~L~dnLnAEi~LgTVt~VdeAVeWL~yTylYVRm~KNP~~Ygi~~~~l~~dp~l~s~~~~l~~~~~~~ 580 (1230)
T KOG0952|consen 501 TGQNPIESQLLPCLIDNLNAEISLGTVTNVDEAVEWLKYTYLYVRMRKNPMAYGISYEELEPDPRLESHRRELCLVAAME 580 (1230)
T ss_pred cCCChhHHHHHHHHHHhhhhheeeceeecHHHHHHHhhceeEEEEeccChHHhhhhhhcccCCchHHHHHHHHHHHHHHH
Confidence 22222 2221 233333333322 111100 0011111 1222 234556666
Q ss_pred HHHhcCc--cCC-C--CccHHHHHhhcCCCChHHHHHHhhhhc-cCcHHHHHHHHHHhCC
Q 001722 722 LWVLGAL--NNV-G--ALTDLGWKMVEFPLDPPLAKMLLMGEQ-LGCLDEVLTIVSMLSV 775 (1020)
Q Consensus 722 L~~lgaL--d~~-g--~LT~lG~~ma~lPldp~lak~ll~~~~-~~c~~e~l~I~a~ls~ 775 (1020)
|-....+ |.. | ..|++||.|+.+-|.-..-+.++.... +--.++++.|+|+-+.
T Consensus 581 L~~~qmi~~D~~t~~~~stdlGR~aS~yYik~ETme~~nn~~k~~~se~~iL~lis~aeE 640 (1230)
T KOG0952|consen 581 LDKVQMIRFDERTGYLKSTDLGRVASNYYIKYETMETFNNLPKSFYSEDDILALISMAEE 640 (1230)
T ss_pred hhhhheEEEecccceEcccchhhhhhhhhhhhHHHHHHHhcccccCCHHHHHHHHHhhHh
Confidence 6554333 433 3 579999999999999999999999988 7788899999888664
No 56
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.96 E-value=1.1e-28 Score=281.07 Aligned_cols=310 Identities=20% Similarity=0.200 Sum_probs=222.8
Q ss_pred CCcHHHHHHHHHHHHhCCeEEEEecCCCchHHHHHHHHHHhcccC------------CCEEEEEcccHHHHHHHHHHHHH
Q 001722 322 LPIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTT------------NGIVGCTQPRRVAAMSVAKRVSE 389 (1020)
Q Consensus 322 LPi~~~q~eil~~i~~~q~vII~gpTGSGKTtqi~q~Lle~~~~~------------~~~Il~tqPrR~lA~qva~rva~ 389 (1020)
--..++|+-.++.|..++.++++|+||||||.+++.++++.++.. ...++++.|||+||.|++.+..+
T Consensus 95 ~~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~~lIlapTReL~~Qi~nea~k 174 (482)
T KOG0335|consen 95 TKPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPRALILAPTRELVDQIYNEARK 174 (482)
T ss_pred cCCCcceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCceEEEeCcHHHhhHHHHHHHh
Confidence 334567777888999999999999999999999988888765432 24789999999999999999866
Q ss_pred Hhcccc-CCEEEEEEee----eecCCCCccEEEEchHHHHHHHhcC-CCCCCccEEEEeCCCcCCCC-ccHHHHHHHHHH
Q 001722 390 EMDTEL-GDKVGYAIRF----EDVTGPSTLIKYMTDGVLLRETLKD-SDLDKYRVIVMDEAHERSLS-TDVLFGILKKVV 462 (1020)
Q Consensus 390 e~~~~l-G~~VGy~ir~----e~~~s~~t~I~~~T~g~LLr~ll~d-~~L~~~s~IIIDEaHERs~~-tD~ll~lLk~il 462 (1020)
..+... -..++|+-+- .......++|+++|+|.|...+-.. -.|.++.+||||||+ |.++ +.|...+=+.+.
T Consensus 175 ~~~~s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~g~i~l~~~k~~vLDEAD-rMlD~mgF~p~Ir~iv~ 253 (482)
T KOG0335|consen 175 FSYLSGMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIERGKISLDNCKFLVLDEAD-RMLDEMGFEPQIRKIVE 253 (482)
T ss_pred hcccccceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhcceeehhhCcEEEecchH-HhhhhccccccHHHHhc
Confidence 544321 1223332211 1123457899999999998876543 458999999999999 6776 555444333332
Q ss_pred hh----cCCceEEEEeccC--CHHHHHHHhCCC-CeE-ee--cCcccc-e--eeeecCCCchhHHHHHHHHHHHHhh-cC
Q 001722 463 AR----RRDFKLIVTSATL--NAQKFSDFFGSV-PIF-HI--PGRTFP-V--NTLYSKTPCEDYVEAAVKQAMTIHI-TS 528 (1020)
Q Consensus 463 ~~----r~~lklIlmSATl--d~~~f~~~f~~~-pvi-~i--~gr~~p-V--~i~y~~~~~~dyl~~av~~~l~i~~-~~ 528 (1020)
.. ....+-+++|||. +...+..+|-.. .++ .| -|+.-. + ++.|.. . .+....+-..+.... ..
T Consensus 254 ~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~rvg~~~~ni~q~i~~V~--~-~~kr~~Lldll~~~~~~~ 330 (482)
T KOG0335|consen 254 QLGMPPKNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVGRVGSTSENITQKILFVN--E-MEKRSKLLDLLNKDDGPP 330 (482)
T ss_pred ccCCCCccceeEEEEeccCChhhhhhHHHHhhccceEEEEeeeccccccceeEeeeec--c-hhhHHHHHHHhhcccCCc
Confidence 21 2367899999999 455566555322 222 11 122211 1 111211 1 122222222222111 11
Q ss_pred CCC-----CEEEEcCCHHHHHHHHHHHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHHHhcCCCeEEEEecchh
Q 001722 529 PPG-----DILIFMTGQDEIEAACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIA 603 (1020)
Q Consensus 529 ~~g-----~ILVFl~g~~eie~l~~~L~e~l~~l~~~~~~~~~~l~vl~lhs~L~~~eq~~I~~~f~~g~rkVIVATnia 603 (1020)
..+ .+||||.+++.+..++..|.. ..+...++||..++.+|.+.+..|+.|...|+|||||+
T Consensus 331 ~~~~~~~e~tlvFvEt~~~~d~l~~~l~~-------------~~~~~~sIhg~~tq~er~~al~~Fr~g~~pvlVaT~Va 397 (482)
T KOG0335|consen 331 SDGEPKWEKTLVFVETKRGADELAAFLSS-------------NGYPAKSIHGDRTQIEREQALNDFRNGKAPVLVATNVA 397 (482)
T ss_pred ccCCcccceEEEEeeccchhhHHHHHHhc-------------CCCCceeecchhhhhHHHHHHHHhhcCCcceEEEehhh
Confidence 234 799999999999999888854 47888999999999999999999999999999999999
Q ss_pred hccCCCCCeeEEEEcCCccceeccCCCCcccccccccCHHHHHHHhcccCCCCC-CEEEEccCh
Q 001722 604 ETSLTVDGIFYVIDTGYGKMKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTGP-GTCYRLYTE 666 (1020)
Q Consensus 604 EtGItIp~V~~VID~G~~K~~~yd~~~g~~~L~~~piS~as~~QRaGRAGR~g~-G~cyrLyt~ 666 (1020)
++|||||+|++||+ || .|.....|+||+||+||.|. |.+..|+..
T Consensus 398 aRGlDi~~V~hVIn--------yD----------mP~d~d~YvHRIGRTGR~Gn~G~atsf~n~ 443 (482)
T KOG0335|consen 398 ARGLDIPNVKHVIN--------YD----------MPADIDDYVHRIGRTGRVGNGGRATSFFNE 443 (482)
T ss_pred hcCCCCCCCceeEE--------ee----------cCcchhhHHHhccccccCCCCceeEEEecc
Confidence 99999999999998 77 78899999999999999995 999999983
No 57
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.96 E-value=4.1e-28 Score=271.62 Aligned_cols=324 Identities=22% Similarity=0.267 Sum_probs=228.7
Q ss_pred HHHHHHcCCCcHHHHHHHHHHHHh---------CCeEEEEecCCCchHHHHHHHHHHhcccCC---CEEEEEcccHHHHH
Q 001722 314 TLAEQRQYLPIFSVRDELLQVIRE---------NQVVVVVGETGSGKTTQLTQYLLEDGYTTN---GIVGCTQPRRVAAM 381 (1020)
Q Consensus 314 ~l~~~R~~LPi~~~q~eil~~i~~---------~q~vII~gpTGSGKTtqi~q~Lle~~~~~~---~~Il~tqPrR~lA~ 381 (1020)
.++.+...--.|++|..++..+.. .+++.|.||||||||+++..++........ -+.+|+.|+|.||.
T Consensus 150 q~l~k~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R~v~~LRavVivPtr~L~~ 229 (620)
T KOG0350|consen 150 QLLVKMAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSRPVKRLRAVVIVPTRELAL 229 (620)
T ss_pred HHHHHhhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHccCCccceEEEEEeeHHHHHH
Confidence 344555666788899988888842 578999999999999998888887655432 37888999999999
Q ss_pred HHHHHHHHHhccccCCEEEEEEeeee-------cCCC----CccEEEEchHHHHHHHhcCC--CCCCccEEEEeCCCcCC
Q 001722 382 SVAKRVSEEMDTELGDKVGYAIRFED-------VTGP----STLIKYMTDGVLLRETLKDS--DLDKYRVIVMDEAHERS 448 (1020)
Q Consensus 382 qva~rva~e~~~~lG~~VGy~ir~e~-------~~s~----~t~I~~~T~g~LLr~ll~d~--~L~~~s~IIIDEaHERs 448 (1020)
||+..+.. +....|-.|+......+ ..+. ..+|++.|||.|..++.+.+ .|.++.++|||||+ |.
T Consensus 230 QV~~~f~~-~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k~f~Lk~LrfLVIDEAD-Rl 307 (620)
T KOG0350|consen 230 QVYDTFKR-LNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNTKSFDLKHLRFLVIDEAD-RL 307 (620)
T ss_pred HHHHHHHH-hccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCCCCcchhhceEEEechHH-HH
Confidence 99998854 44444555554332222 1111 34899999999999998654 48999999999999 33
Q ss_pred CCc------cHHHHHHH------------------------HHHh----hcCCceEEEEeccC--CHHHHHHHhCCCC-e
Q 001722 449 LST------DVLFGILK------------------------KVVA----RRRDFKLIVTSATL--NAQKFSDFFGSVP-I 491 (1020)
Q Consensus 449 ~~t------D~ll~lLk------------------------~il~----~r~~lklIlmSATl--d~~~f~~~f~~~p-v 491 (1020)
++. |.++.+++ .++. ..+.+.-+++|||+ ++.++.++--+.| +
T Consensus 308 l~qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l~kL~~satLsqdP~Kl~~l~l~~Prl 387 (620)
T KOG0350|consen 308 LDQSFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPLWKLVFSATLSQDPSKLKDLTLHIPRL 387 (620)
T ss_pred HHHHHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchhHhhhcchhhhcChHHHhhhhcCCCce
Confidence 221 11111111 1111 12345578889999 8899998866666 5
Q ss_pred EeecCcccceeeeecCCC-chh-HHHH----HHHHHHHHhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHHHhhccccCCC
Q 001722 492 FHIPGRTFPVNTLYSKTP-CED-YVEA----AVKQAMTIHITSPPGDILIFMTGQDEIEAACFALKERMEQLISSTTREV 565 (1020)
Q Consensus 492 i~i~gr~~pV~i~y~~~~-~~d-yl~~----av~~~l~i~~~~~~g~ILVFl~g~~eie~l~~~L~e~l~~l~~~~~~~~ 565 (1020)
+.+.+. .-..|.-.+ ... ++.. ....+........-..+|+|+++.+.+..++..|.=.+..
T Consensus 388 ~~v~~~---~~~ryslp~~l~~~~vv~~~~~kpl~~~~lI~~~k~~r~lcf~~S~~sa~Rl~~~L~v~~~~--------- 455 (620)
T KOG0350|consen 388 FHVSKP---LIGRYSLPSSLSHRLVVTEPKFKPLAVYALITSNKLNRTLCFVNSVSSANRLAHVLKVEFCS--------- 455 (620)
T ss_pred EEeecc---cceeeecChhhhhceeecccccchHhHHHHHHHhhcceEEEEecchHHHHHHHHHHHHHhcc---------
Confidence 555431 112221110 000 0000 0001111112234568999999999999999988633322
Q ss_pred CCeEEEEecCCCCHHHHHHHHHHhcCCCeEEEEecchhhccCCCCCeeEEEEcCCccceeccCCCCcccccccccCHHHH
Q 001722 566 PELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAETSLTVDGIFYVIDTGYGKMKVYNPKMGMDALQVFPVSRAAA 645 (1020)
Q Consensus 566 ~~l~vl~lhs~L~~~eq~~I~~~f~~g~rkVIVATniaEtGItIp~V~~VID~G~~K~~~yd~~~g~~~L~~~piS~as~ 645 (1020)
....+-.+.|+|....|.+.++.|..|.+.|+|||+++++|||+.+|+.||+ || .|.+.-.|
T Consensus 456 ~~~~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VIN--------Yd----------~P~~~kty 517 (620)
T KOG0350|consen 456 DNFKVSEFTGQLNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVIN--------YD----------PPASDKTY 517 (620)
T ss_pred ccchhhhhhhhhhHHHHHHHHHHHhcCCceEEEehhhhhcCCcccccceEee--------cC----------CCchhhHH
Confidence 3455666899999999999999999999999999999999999999999999 88 69999999
Q ss_pred HHHhcccCCCCC-CEEEEccChhhH
Q 001722 646 DQRAGRAGRTGP-GTCYRLYTESAY 669 (1020)
Q Consensus 646 ~QRaGRAGR~g~-G~cyrLyt~~~~ 669 (1020)
+||+||+||.|. |.||.|.+....
T Consensus 518 VHR~GRTARAgq~G~a~tll~~~~~ 542 (620)
T KOG0350|consen 518 VHRAGRTARAGQDGYAITLLDKHEK 542 (620)
T ss_pred HHhhcccccccCCceEEEeeccccc
Confidence 999999999995 999999987543
No 58
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.96 E-value=8e-28 Score=261.51 Aligned_cols=312 Identities=22% Similarity=0.270 Sum_probs=236.6
Q ss_pred cHHHHHHHHHHHHhC--CeEEEEecCCCchHHHHHHHHHHhccc--CCCEEEEEcccHHHHHHHHHHHHHHhccccCCEE
Q 001722 324 IFSVRDELLQVIREN--QVVVVVGETGSGKTTQLTQYLLEDGYT--TNGIVGCTQPRRVAAMSVAKRVSEEMDTELGDKV 399 (1020)
Q Consensus 324 i~~~q~eil~~i~~~--q~vII~gpTGSGKTtqi~q~Lle~~~~--~~~~Il~tqPrR~lA~qva~rva~e~~~~lG~~V 399 (1020)
-...|+..|..++.+ +++|..+..|+|||+++.+.++...-. .....+|+.|+|+||.|.-+-| ++||...+...
T Consensus 113 PskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~~~~PQ~iCLaPtrELA~Q~~eVv-~eMGKf~~ita 191 (477)
T KOG0332|consen 113 PSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPDVVVPQCICLAPTRELAPQTGEVV-EEMGKFTELTA 191 (477)
T ss_pred cchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCccccCCCceeeCchHHHHHHHHHHH-HHhcCceeeeE
Confidence 456777788888765 799999999999999998888875322 1246889999999999999887 78987778888
Q ss_pred EEEEeeeecCC---CCccEEEEchHHHHHHHhc--CCCCCCccEEEEeCCCcCCCCcc----HHHHHHHHHHhhcCCceE
Q 001722 400 GYAIRFEDVTG---PSTLIKYMTDGVLLRETLK--DSDLDKYRVIVMDEAHERSLSTD----VLFGILKKVVARRRDFKL 470 (1020)
Q Consensus 400 Gy~ir~e~~~s---~~t~I~~~T~g~LLr~ll~--d~~L~~~s~IIIDEaHERs~~tD----~ll~lLk~il~~r~~lkl 470 (1020)
.|.++...... -...|++.|+|.++.++.. --++..+.++|+|||+. +++++ ....+.+. ..++.++
T Consensus 192 ~yair~sk~~rG~~i~eqIviGTPGtv~Dlm~klk~id~~kikvfVlDEAD~-Mi~tqG~~D~S~rI~~~---lP~~~Ql 267 (477)
T KOG0332|consen 192 SYAIRGSKAKRGNKLTEQIVIGTPGTVLDLMLKLKCIDLEKIKVFVLDEADV-MIDTQGFQDQSIRIMRS---LPRNQQL 267 (477)
T ss_pred EEEecCcccccCCcchhheeeCCCccHHHHHHHHHhhChhhceEEEecchhh-hhhcccccccchhhhhh---cCCcceE
Confidence 99998773322 2457999999999988765 34578899999999993 34332 22222222 2358999
Q ss_pred EEEeccCC--HHHHHHH-hCCCCeEeecCc---ccceeeeecCCCchhHHHHHHHHHHHHhhcCCCCCEEEEcCCHHHHH
Q 001722 471 IVTSATLN--AQKFSDF-FGSVPIFHIPGR---TFPVNTLYSKTPCEDYVEAAVKQAMTIHITSPPGDILIFMTGQDEIE 544 (1020)
Q Consensus 471 IlmSATld--~~~f~~~-f~~~pvi~i~gr---~~pV~i~y~~~~~~dyl~~av~~~l~i~~~~~~g~ILVFl~g~~eie 544 (1020)
|++|||.+ ...|+.- ..++.++.+..+ .++|..+|...++.+.--.++.. ++-.-.-|..+|||.++..+.
T Consensus 268 lLFSATf~e~V~~Fa~kivpn~n~i~Lk~eel~L~~IkQlyv~C~~~~~K~~~l~~---lyg~~tigqsiIFc~tk~ta~ 344 (477)
T KOG0332|consen 268 LLFSATFVEKVAAFALKIVPNANVIILKREELALDNIKQLYVLCACRDDKYQALVN---LYGLLTIGQSIIFCHTKATAM 344 (477)
T ss_pred EeeechhHHHHHHHHHHhcCCCceeeeehhhccccchhhheeeccchhhHHHHHHH---HHhhhhhhheEEEEeehhhHH
Confidence 99999994 4555543 455555555433 36777788776655433333333 332233588999999999999
Q ss_pred HHHHHHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHHHhcCCCeEEEEecchhhccCCCCCeeEEEEcCCccce
Q 001722 545 AACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAETSLTVDGIFYVIDTGYGKMK 624 (1020)
Q Consensus 545 ~l~~~L~e~l~~l~~~~~~~~~~l~vl~lhs~L~~~eq~~I~~~f~~g~rkVIVATniaEtGItIp~V~~VID~G~~K~~ 624 (1020)
.++..|.+ .+..|..+||.|..++|..|.+.|+.|.-||+|+||+.++|||++.|.+|||
T Consensus 345 ~l~~~m~~-------------~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV~ARGiDv~qVs~VvN------- 404 (477)
T KOG0332|consen 345 WLYEEMRA-------------EGHQVSLLHGDLTVEQRAAIIDRFREGKEKVLITTNVCARGIDVAQVSVVVN------- 404 (477)
T ss_pred HHHHHHHh-------------cCceeEEeeccchhHHHHHHHHHHhcCcceEEEEechhhcccccceEEEEEe-------
Confidence 98887765 3788999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCcccccccccCHHHHHHHhcccCCCCC-CEEEEccChhh
Q 001722 625 VYNPKMGMDALQVFPVSRAAADQRAGRAGRTGP-GTCYRLYTESA 668 (1020)
Q Consensus 625 ~yd~~~g~~~L~~~piS~as~~QRaGRAGR~g~-G~cyrLyt~~~ 668 (1020)
||--+. ...-.+.+.|.||+||+||.|. |.+|.|.....
T Consensus 405 -ydlP~~----~~~~pD~etYlHRiGRtGRFGkkG~a~n~v~~~~ 444 (477)
T KOG0332|consen 405 -YDLPVK----YTGEPDYETYLHRIGRTGRFGKKGLAINLVDDKD 444 (477)
T ss_pred -cCCccc----cCCCCCHHHHHHHhcccccccccceEEEeecccC
Confidence 552221 2233678999999999999995 99999887543
No 59
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.96 E-value=1.6e-27 Score=280.37 Aligned_cols=301 Identities=18% Similarity=0.186 Sum_probs=215.6
Q ss_pred HHHHHHHHHHHhCCeEEEEecCCCchHHHHHHHHHHhcccCCCEEEEEcccHHHHHHHHHHHHHHhccccCCEEEEEEee
Q 001722 326 SVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELGDKVGYAIRF 405 (1020)
Q Consensus 326 ~~q~eil~~i~~~q~vII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~lA~qva~rva~e~~~~lG~~VGy~ir~ 405 (1020)
+-|.++|+++.++++++++.|||+|||.++..+.+=. .|..+|+.|..+|.......+. . .|..+.+.-..
T Consensus 20 ~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~----~G~TLVVSPLiSLM~DQV~~l~-~----~Gi~A~~lnS~ 90 (590)
T COG0514 20 PGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLL----EGLTLVVSPLISLMKDQVDQLE-A----AGIRAAYLNST 90 (590)
T ss_pred CCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhc----CCCEEEECchHHHHHHHHHHHH-H----cCceeehhhcc
Confidence 3488999999999999999999999999754443321 4678999999999988887773 2 23333321111
Q ss_pred ----e------ecCCCCccEEEEchHHHHHHHhcC-CCCCCccEEEEeCCCcCCCCc-cH--HHHHHHHHHhhcCCceEE
Q 001722 406 ----E------DVTGPSTLIKYMTDGVLLRETLKD-SDLDKYRVIVMDEAHERSLST-DV--LFGILKKVVARRRDFKLI 471 (1020)
Q Consensus 406 ----e------~~~s~~t~I~~~T~g~LLr~ll~d-~~L~~~s~IIIDEaHERs~~t-D~--ll~lLk~il~~r~~lklI 471 (1020)
+ .......+|+|.+|+.|......+ -.-..+++|+|||||+-+-+. || -+..|..+....|++.++
T Consensus 91 l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqWGhdFRP~Y~~lg~l~~~~~~~p~~ 170 (590)
T COG0514 91 LSREERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQWGHDFRPDYRRLGRLRAGLPNPPVL 170 (590)
T ss_pred cCHHHHHHHHHHHhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHhhcCCccCHhHHHHHHHHhhCCCCCEE
Confidence 0 012235789999999886542211 114578999999999855544 33 234455666677899999
Q ss_pred EEeccCCHHHH---HHHhC-CCCeEeecCcccceeeeecCCCchhHHHHHHHHHHHHhhcCCCCCEEEEcCCHHHHHHHH
Q 001722 472 VTSATLNAQKF---SDFFG-SVPIFHIPGRTFPVNTLYSKTPCEDYVEAAVKQAMTIHITSPPGDILIFMTGQDEIEAAC 547 (1020)
Q Consensus 472 lmSATld~~~f---~~~f~-~~pvi~i~gr~~pV~i~y~~~~~~dyl~~av~~~l~i~~~~~~g~ILVFl~g~~eie~l~ 547 (1020)
.+|||.+...- .+.++ +.+.+.+.+...| .++|.-.+..+-.... .-+.. ......+.-||||.|+..++.++
T Consensus 171 AlTATA~~~v~~DI~~~L~l~~~~~~~~sfdRp-Ni~~~v~~~~~~~~q~-~fi~~-~~~~~~~~GIIYc~sRk~~E~ia 247 (590)
T COG0514 171 ALTATATPRVRDDIREQLGLQDANIFRGSFDRP-NLALKVVEKGEPSDQL-AFLAT-VLPQLSKSGIIYCLTRKKVEELA 247 (590)
T ss_pred EEeCCCChHHHHHHHHHhcCCCcceEEecCCCc-hhhhhhhhcccHHHHH-HHHHh-hccccCCCeEEEEeeHHhHHHHH
Confidence 99999975433 33333 3333333322222 1222111111111111 11111 22345677899999999999999
Q ss_pred HHHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHHHhcCCCeEEEEecchhhccCCCCCeeEEEEcCCccceecc
Q 001722 548 FALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAETSLTVDGIFYVIDTGYGKMKVYN 627 (1020)
Q Consensus 548 ~~L~e~l~~l~~~~~~~~~~l~vl~lhs~L~~~eq~~I~~~f~~g~rkVIVATniaEtGItIp~V~~VID~G~~K~~~yd 627 (1020)
+.|.. .++.+.++||+|+.++|..+.+.|.++..+|||||+.+.+|||.|||++||+ ||
T Consensus 248 ~~L~~-------------~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfViH--------~~ 306 (590)
T COG0514 248 EWLRK-------------NGISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIH--------YD 306 (590)
T ss_pred HHHHH-------------CCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEEEE--------ec
Confidence 99975 2788999999999999999999999999999999999999999999999999 55
Q ss_pred CCCCcccccccccCHHHHHHHhcccCCCC-CCEEEEccChhhH
Q 001722 628 PKMGMDALQVFPVSRAAADQRAGRAGRTG-PGTCYRLYTESAY 669 (1020)
Q Consensus 628 ~~~g~~~L~~~piS~as~~QRaGRAGR~g-~G~cyrLyt~~~~ 669 (1020)
.|.|.++|.|-+|||||.| |-.|+.||++.+.
T Consensus 307 ----------lP~s~EsYyQE~GRAGRDG~~a~aill~~~~D~ 339 (590)
T COG0514 307 ----------LPGSIESYYQETGRAGRDGLPAEAILLYSPEDI 339 (590)
T ss_pred ----------CCCCHHHHHHHHhhccCCCCcceEEEeeccccH
Confidence 6999999999999999999 7999999998875
No 60
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.96 E-value=1.6e-27 Score=266.43 Aligned_cols=312 Identities=22% Similarity=0.261 Sum_probs=236.5
Q ss_pred cCCCcHHHHHHHHHHHHhCCeEEEEecCCCchHHHHHHHHHHhccc-------CCCEEEEEcccHHHHHHHHHHHHHHhc
Q 001722 320 QYLPIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYT-------TNGIVGCTQPRRVAAMSVAKRVSEEMD 392 (1020)
Q Consensus 320 ~~LPi~~~q~eil~~i~~~q~vII~gpTGSGKTtqi~q~Lle~~~~-------~~~~Il~tqPrR~lA~qva~rva~e~~ 392 (1020)
.+-..++.|.+++.....+++||-+|-||||||-++..+++.+... .+...++++|+|++|.|+.... +.++
T Consensus 242 Ey~kptpiq~qalptalsgrdvigIAktgSgktaAfi~pm~~himdq~eL~~g~gPi~vilvPTrela~Qi~~ea-Kkf~ 320 (731)
T KOG0339|consen 242 EYEKPTPIQCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGEGPIGVILVPTRELASQIFSEA-KKFG 320 (731)
T ss_pred hcccCCcccccccccccccccchheeeccCcchhHHHHHHHHHhcchhhhcCCCCCeEEEEeccHHHHHHHHHHH-HHhh
Confidence 4455778899999999999999999999999999988877755322 2345677899999999987654 4454
Q ss_pred cccCCEEEEEEeeee------cCCCCccEEEEchHHHHHHHh-cCCCCCCccEEEEeCCCcCCCCccHHHHHHHHHHhhc
Q 001722 393 TELGDKVGYAIRFED------VTGPSTLIKYMTDGVLLRETL-KDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARR 465 (1020)
Q Consensus 393 ~~lG~~VGy~ir~e~------~~s~~t~I~~~T~g~LLr~ll-~d~~L~~~s~IIIDEaHERs~~tD~ll~lLk~il~~r 465 (1020)
.-.|..+.....+.+ -....+.|++||||.|+.... ....+.+++++|||||+ |..++.+...+-......+
T Consensus 321 K~ygl~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~VkmKatn~~rvS~LV~DEad-rmfdmGfe~qVrSI~~hir 399 (731)
T KOG0339|consen 321 KAYGLRVVAVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVKMKATNLSRVSYLVLDEAD-RMFDMGFEPQVRSIKQHIR 399 (731)
T ss_pred hhccceEEEeecCCcHHHHHHhhhcCCeEEEechHHHHHHHHhhcccceeeeEEEEechh-hhhccccHHHHHHHHhhcC
Confidence 444433321111111 112578899999999999864 44579999999999999 8888888777666666789
Q ss_pred CCceEEEEeccC--CHHHHHHHhCCCCeEeecCcccc----ee-eeecCCCchhHHHHHHHHHHHHhh--cCCCCCEEEE
Q 001722 466 RDFKLIVTSATL--NAQKFSDFFGSVPIFHIPGRTFP----VN-TLYSKTPCEDYVEAAVKQAMTIHI--TSPPGDILIF 536 (1020)
Q Consensus 466 ~~lklIlmSATl--d~~~f~~~f~~~pvi~i~gr~~p----V~-i~y~~~~~~dyl~~av~~~l~i~~--~~~~g~ILVF 536 (1020)
|+-+.|++|||+ .++.++.-|...||-.+.|..-. ++ ..+.-.....-+. .+..|+ ....|++|||
T Consensus 400 pdrQtllFsaTf~~kIe~lard~L~dpVrvVqg~vgean~dITQ~V~V~~s~~~Kl~-----wl~~~L~~f~S~gkvlif 474 (731)
T KOG0339|consen 400 PDRQTLLFSATFKKKIEKLARDILSDPVRVVQGEVGEANEDITQTVSVCPSEEKKLN-----WLLRHLVEFSSEGKVLIF 474 (731)
T ss_pred CcceEEEeeccchHHHHHHHHHHhcCCeeEEEeehhccccchhheeeeccCcHHHHH-----HHHHHhhhhccCCcEEEE
Confidence 999999999999 46777766655677666553211 10 1111111111111 122222 2346899999
Q ss_pred cCCHHHHHHHHHHHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHHHhcCCCeEEEEecchhhccCCCCCeeEEE
Q 001722 537 MTGQDEIEAACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAETSLTVDGIFYVI 616 (1020)
Q Consensus 537 l~g~~eie~l~~~L~e~l~~l~~~~~~~~~~l~vl~lhs~L~~~eq~~I~~~f~~g~rkVIVATniaEtGItIp~V~~VI 616 (1020)
++...+.+.++..|. ..++.|..+||++.+.+|.+++..|+.+...|+|||+++++|+||+++..||
T Consensus 475 VTKk~~~e~i~a~Lk-------------lk~~~v~llhgdkdqa~rn~~ls~fKkk~~~VlvatDvaargldI~~ikTVv 541 (731)
T KOG0339|consen 475 VTKKADAEEIAANLK-------------LKGFNVSLLHGDKDQAERNEVLSKFKKKRKPVLVATDVAARGLDIPSIKTVV 541 (731)
T ss_pred EeccCCHHHHHHHhc-------------cccceeeeecCchhhHHHHHHHHHHhhcCCceEEEeeHhhcCCCccccceee
Confidence 999999999988774 2478999999999999999999999999999999999999999999999999
Q ss_pred EcCCccceeccCCCCcccccccccCHHHHHHHhcccCCCCC-CEEEEccChhhH
Q 001722 617 DTGYGKMKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTGP-GTCYRLYTESAY 669 (1020)
Q Consensus 617 D~G~~K~~~yd~~~g~~~L~~~piS~as~~QRaGRAGR~g~-G~cyrLyt~~~~ 669 (1020)
+ || +--+...+.||+||+||.|. |+.|.|.|+.+-
T Consensus 542 n--------yD----------~ardIdththrigrtgRag~kGvayTlvTeKDa 577 (731)
T KOG0339|consen 542 N--------YD----------FARDIDTHTHRIGRTGRAGEKGVAYTLVTEKDA 577 (731)
T ss_pred c--------cc----------ccchhHHHHHHhhhcccccccceeeEEechhhH
Confidence 8 66 56678899999999999995 999999998875
No 61
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.95 E-value=1.6e-26 Score=264.68 Aligned_cols=284 Identities=17% Similarity=0.153 Sum_probs=186.6
Q ss_pred HHHHHHHHHHhCC--eEEEEecCCCchHHHHHHHHHHhcccCCCEEEEEcccHHHHHHHHHHHHHHhccc---cCCEEEE
Q 001722 327 VRDELLQVIRENQ--VVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTE---LGDKVGY 401 (1020)
Q Consensus 327 ~q~eil~~i~~~q--~vII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~lA~qva~rva~e~~~~---lG~~VGy 401 (1020)
+|.++++++.++. +++|++|||||||.++..+++.. ..+++++.|+++|+.++++++...+..- .+..++-
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~~----~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~~~~~v~~ 76 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLHG----ENDTIALYPTNALIEDQTEAIKEFVDVFKPERDVNLLH 76 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHc----CCCEEEEeChHHHHHHHHHHHHHHHHhcCCCCCceEEE
Confidence 4888999998776 48899999999999988777753 3467889999999999999987765311 1111211
Q ss_pred EEeee---e-----------------------cC-CCCccEEEEchHHHHHHHh---cCC------CCCCccEEEEeCCC
Q 001722 402 AIRFE---D-----------------------VT-GPSTLIKYMTDGVLLRETL---KDS------DLDKYRVIVMDEAH 445 (1020)
Q Consensus 402 ~ir~e---~-----------------------~~-s~~t~I~~~T~g~LLr~ll---~d~------~L~~~s~IIIDEaH 445 (1020)
..++ + .. .....|+++||++|...+. .++ .+.++++|||||+|
T Consensus 77 -~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~iV~DE~H 155 (357)
T TIGR03158 77 -VSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTVIFDEFH 155 (357)
T ss_pred -ecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCEEEEeccc
Confidence 0000 0 00 1134456666776654321 122 26899999999999
Q ss_pred cCCCCcc-HHH---HHHHHHHhhcCCceEEEEeccCCHHH---HHHH-hCCCCeEeecCc--cc----------------
Q 001722 446 ERSLSTD-VLF---GILKKVVARRRDFKLIVTSATLNAQK---FSDF-FGSVPIFHIPGR--TF---------------- 499 (1020)
Q Consensus 446 ERs~~tD-~ll---~lLk~il~~r~~lklIlmSATld~~~---f~~~-f~~~pvi~i~gr--~~---------------- 499 (1020)
..+.... .++ .....+.......++|+||||++... +.+. +.+.|+..++|+ .|
T Consensus 156 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~~~~~~l~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~ 235 (357)
T TIGR03158 156 LYDAKQLVGMLFLLAYMQLIRFFECRRKFVFLSATPDPALILRLQNAKQAGVKIAPIDGEKYQFPDNPELEADNKTQSFR 235 (357)
T ss_pred ccCcccchhhhhhhHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHhccccCceeeeecCcccccCCChhhhccccccccc
Confidence 8665432 222 22332222233579999999997542 2232 134677777777 11
Q ss_pred ----ceeeeecCCC--chhHHHHHHHHHHHHhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHHHhhccccCCCCCeEEEEe
Q 001722 500 ----PVNTLYSKTP--CEDYVEAAVKQAMTIHITSPPGDILIFMTGQDEIEAACFALKERMEQLISSTTREVPELLILPI 573 (1020)
Q Consensus 500 ----pV~i~y~~~~--~~dyl~~av~~~l~i~~~~~~g~ILVFl~g~~eie~l~~~L~e~l~~l~~~~~~~~~~l~vl~l 573 (1020)
+++..+...+ ..+.+...+..+........++++||||+++..++.++..|.+. ..++.+..+
T Consensus 236 ~~~~~i~~~~~~~~~~~~~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~-----------~~~~~~~~l 304 (357)
T TIGR03158 236 PVLPPVELELIPAPDFKEEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQ-----------GLGDDIGRI 304 (357)
T ss_pred eeccceEEEEEeCCchhHHHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhh-----------CCCceEEee
Confidence 2444343321 11222222233333222335678999999999999999988652 124567889
Q ss_pred cCCCCHHHHHHHHHHhcCCCeEEEEecchhhccCCCCCeeEEEEcCCccceeccCCCCcccccccccCHHHHHHHhcccC
Q 001722 574 YSQLPADLQAKIFEKAKEGTRKCIVATNIAETSLTVDGIFYVIDTGYGKMKVYNPKMGMDALQVFPVSRAAADQRAGRAG 653 (1020)
Q Consensus 574 hs~L~~~eq~~I~~~f~~g~rkVIVATniaEtGItIp~V~~VID~G~~K~~~yd~~~g~~~L~~~piS~as~~QRaGRAG 653 (1020)
||.++..+|.++. ...|||||+++++||||+++ +||- .|.+.++|+||+||+|
T Consensus 305 ~g~~~~~~R~~~~------~~~iLVaTdv~~rGiDi~~~-~vi~--------------------~p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 305 TGFAPKKDRERAM------QFDILLGTSTVDVGVDFKRD-WLIF--------------------SARDAAAFWQRLGRLG 357 (357)
T ss_pred ecCCCHHHHHHhc------cCCEEEEecHHhcccCCCCc-eEEE--------------------CCCCHHHHhhhcccCC
Confidence 9999999987653 67899999999999999987 5551 2678899999999998
No 62
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=99.95 E-value=3.1e-28 Score=274.62 Aligned_cols=323 Identities=21% Similarity=0.236 Sum_probs=222.8
Q ss_pred hHHHHHHHcCCCcHHHHHHHHHHHHhC-CeEEEEecCCCchHHHHHHHHHHhccc-------------CCC--EEEEEcc
Q 001722 312 SKTLAEQRQYLPIFSVRDELLQVIREN-QVVVVVGETGSGKTTQLTQYLLEDGYT-------------TNG--IVGCTQP 375 (1020)
Q Consensus 312 ~~~l~~~R~~LPi~~~q~eil~~i~~~-q~vII~gpTGSGKTtqi~q~Lle~~~~-------------~~~--~Il~tqP 375 (1020)
....+++-...-..++|...|.++..+ .+++-.|+||||||+++-.++++.... .+. ..+|+.|
T Consensus 192 iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~~~k~~k~~~LV~tP 271 (731)
T KOG0347|consen 192 ILRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNTSAKYVKPIALVVTP 271 (731)
T ss_pred HHHHHHhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhhhHHhccCcceeEEecC
Confidence 344455556667778899888888777 889999999999999998888873211 122 3788999
Q ss_pred cHHHHHHHHHHHHHHhccccCCEEEEEEee------eecCCCCccEEEEchHHHHHHHhcCC----CCCCccEEEEeCCC
Q 001722 376 RRVAAMSVAKRVSEEMDTELGDKVGYAIRF------EDVTGPSTLIKYMTDGVLLRETLKDS----DLDKYRVIVMDEAH 445 (1020)
Q Consensus 376 rR~lA~qva~rva~e~~~~lG~~VGy~ir~------e~~~s~~t~I~~~T~g~LLr~ll~d~----~L~~~s~IIIDEaH 445 (1020)
||+||.||.+.+... ....|..|.--+.+ +...+....|+++|||.|+..+..+. .+.+++|+||||++
T Consensus 272 TRELa~QV~~Hl~ai-~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~l~~~k~vkcLVlDEaD 350 (731)
T KOG0347|consen 272 TRELAHQVKQHLKAI-AEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTHLGNFKKVKCLVLDEAD 350 (731)
T ss_pred hHHHHHHHHHHHHHh-ccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhhhhhhhhceEEEEccHH
Confidence 999999999887443 22223222211111 12334578899999999998776554 37889999999999
Q ss_pred cCCCCcc---HHHHHHHHHH--hhcCCceEEEEeccCCHHHHHHHhC-----------CCCe---E-eecCcccceeeee
Q 001722 446 ERSLSTD---VLFGILKKVV--ARRRDFKLIVTSATLNAQKFSDFFG-----------SVPI---F-HIPGRTFPVNTLY 505 (1020)
Q Consensus 446 ERs~~tD---~ll~lLk~il--~~r~~lklIlmSATld~~~f~~~f~-----------~~pv---i-~i~gr~~pV~i~y 505 (1020)
|.+.-. -|-.+|+.+. +..+..+.+++|||++...+...-. +.++ + .+.-+.-|.-+-
T Consensus 351 -RmvekghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq~Lmk~ig~~~kpkiiD- 428 (731)
T KOG0347|consen 351 -RMVEKGHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQHLMKKIGFRGKPKIID- 428 (731)
T ss_pred -HHhhhccHHHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhhccchhhhhhHHHHHHHHHhCccCCCeeEe-
Confidence 665433 3444555554 2345679999999995433221110 0000 0 000111121111
Q ss_pred cCCCchhHHHHHHHHHHHH-----------hhcCCCCCEEEEcCCHHHHHHHHHHHHHHHHHhhccccCCCCCeEEEEec
Q 001722 506 SKTPCEDYVEAAVKQAMTI-----------HITSPPGDILIFMTGQDEIEAACFALKERMEQLISSTTREVPELLILPIY 574 (1020)
Q Consensus 506 ~~~~~~dyl~~av~~~l~i-----------~~~~~~g~ILVFl~g~~eie~l~~~L~e~l~~l~~~~~~~~~~l~vl~lh 574 (1020)
-++...-........+.. .+...+|..||||++.+.|..++-.|.. .++..+++|
T Consensus 429 -~t~q~~ta~~l~Es~I~C~~~eKD~ylyYfl~ryPGrTlVF~NsId~vKRLt~~L~~-------------L~i~p~~LH 494 (731)
T KOG0347|consen 429 -LTPQSATASTLTESLIECPPLEKDLYLYYFLTRYPGRTLVFCNSIDCVKRLTVLLNN-------------LDIPPLPLH 494 (731)
T ss_pred -cCcchhHHHHHHHHhhcCCccccceeEEEEEeecCCceEEEechHHHHHHHHHHHhh-------------cCCCCchhh
Confidence 111111111111111110 1234589999999999999988887753 266778999
Q ss_pred CCCCHHHHHHHHHHhcCCCeEEEEecchhhccCCCCCeeEEEEcCCccceeccCCCCcccccccccCHHHHHHHhcccCC
Q 001722 575 SQLPADLQAKIFEKAKEGTRKCIVATNIAETSLTVDGIFYVIDTGYGKMKVYNPKMGMDALQVFPVSRAAADQRAGRAGR 654 (1020)
Q Consensus 575 s~L~~~eq~~I~~~f~~g~rkVIVATniaEtGItIp~V~~VID~G~~K~~~yd~~~g~~~L~~~piS~as~~QRaGRAGR 654 (1020)
+.|.+.+|.+-++.|....--|+|||++|++|||||+|.+||+ |. +|-+...|+||+||+.|
T Consensus 495 A~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIH--------Yq----------VPrtseiYVHRSGRTAR 556 (731)
T KOG0347|consen 495 ASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIH--------YQ----------VPRTSEIYVHRSGRTAR 556 (731)
T ss_pred HHHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEE--------ee----------cCCccceeEeccccccc
Confidence 9999999999999999999999999999999999999999998 55 79999999999999999
Q ss_pred CCC-CEEEEccChhhH
Q 001722 655 TGP-GTCYRLYTESAY 669 (1020)
Q Consensus 655 ~g~-G~cyrLyt~~~~ 669 (1020)
.+. |....|+.+.+.
T Consensus 557 A~~~Gvsvml~~P~e~ 572 (731)
T KOG0347|consen 557 ANSEGVSVMLCGPQEV 572 (731)
T ss_pred ccCCCeEEEEeChHHh
Confidence 995 999999987654
No 63
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.95 E-value=5.8e-28 Score=257.65 Aligned_cols=307 Identities=20% Similarity=0.255 Sum_probs=225.6
Q ss_pred HHHHHHHHHHHHhCCeEEEEecCCCchHHHHHHHHHHhcccCC--CEEEEEcccHHHHHHHHHHHHHHhccccCCEEEEE
Q 001722 325 FSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTTN--GIVGCTQPRRVAAMSVAKRVSEEMDTELGDKVGYA 402 (1020)
Q Consensus 325 ~~~q~eil~~i~~~q~vII~gpTGSGKTtqi~q~Lle~~~~~~--~~Il~tqPrR~lA~qva~rva~e~~~~lG~~VGy~ 402 (1020)
.++|++.|.....+++++.-+..|+|||-++..++++..-... -..+|++|+|+||.|+.+-+ .+++..+|..|-..
T Consensus 109 SPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~~~~~IQ~~ilVPtrelALQtSqvc-~~lskh~~i~vmvt 187 (459)
T KOG0326|consen 109 SPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDPKKNVIQAIILVPTRELALQTSQVC-KELSKHLGIKVMVT 187 (459)
T ss_pred CCccccccceeecchhhhhhccCCCCCccceechhhhhcCccccceeEEEEeecchhhHHHHHHH-HHHhcccCeEEEEe
Confidence 4678999999999999999999999999999888888754332 25678899999999876544 66666666544333
Q ss_pred Eeeee------cCCCCccEEEEchHHHHHHHhcC-CCCCCccEEEEeCCCcCCCCccHHHHHHHHHHhhcCCceEEEEec
Q 001722 403 IRFED------VTGPSTLIKYMTDGVLLRETLKD-SDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTSA 475 (1020)
Q Consensus 403 ir~e~------~~s~~t~I~~~T~g~LLr~ll~d-~~L~~~s~IIIDEaHERs~~tD~ll~lLk~il~~r~~lklIlmSA 475 (1020)
..+.+ ..+...++++.|||.++...... ..+++..++|+|||+ .-+..||--.+-+-+.-..++.++++.||
T Consensus 188 tGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~DEAD-KlLs~~F~~~~e~li~~lP~~rQillySA 266 (459)
T KOG0326|consen 188 TGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKKGVADLSDCVILVMDEAD-KLLSVDFQPIVEKLISFLPKERQILLYSA 266 (459)
T ss_pred cCCcccccceeeecCceEEEEcCChhHHHHHhcccccchhceEEEechhh-hhhchhhhhHHHHHHHhCCccceeeEEec
Confidence 22222 23456789999999999877544 458999999999999 45566654444333333455789999999
Q ss_pred cCC--HHHHHHHhCCCC-eEeecCccc--ceeeeecCCCchhHHHHHHHHHHHHhhcCCCCCEEEEcCCHHHHHHHHHHH
Q 001722 476 TLN--AQKFSDFFGSVP-IFHIPGRTF--PVNTLYSKTPCEDYVEAAVKQAMTIHITSPPGDILIFMTGQDEIEAACFAL 550 (1020)
Q Consensus 476 Tld--~~~f~~~f~~~p-vi~i~gr~~--pV~i~y~~~~~~dyl~~av~~~l~i~~~~~~g~ILVFl~g~~eie~l~~~L 550 (1020)
|.. +..|.+-+...| .++.-...- -|..+|.-.....-+ .++.+.+ ....-...+|||++...+|.++..+
T Consensus 267 TFP~tVk~Fm~~~l~kPy~INLM~eLtl~GvtQyYafV~e~qKv-hCLntLf---skLqINQsIIFCNS~~rVELLAkKI 342 (459)
T KOG0326|consen 267 TFPLTVKGFMDRHLKKPYEINLMEELTLKGVTQYYAFVEERQKV-HCLNTLF---SKLQINQSIIFCNSTNRVELLAKKI 342 (459)
T ss_pred ccchhHHHHHHHhccCcceeehhhhhhhcchhhheeeechhhhh-hhHHHHH---HHhcccceEEEeccchHhHHHHHHH
Confidence 994 566655443333 232221111 133344321111111 1122221 1112357899999999999888877
Q ss_pred HHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHHHhcCCCeEEEEecchhhccCCCCCeeEEEEcCCccceeccCCC
Q 001722 551 KERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAETSLTVDGIFYVIDTGYGKMKVYNPKM 630 (1020)
Q Consensus 551 ~e~l~~l~~~~~~~~~~l~vl~lhs~L~~~eq~~I~~~f~~g~rkVIVATniaEtGItIp~V~~VID~G~~K~~~yd~~~ 630 (1020)
.+. ++.+..+|+.|.++.|.+||..|++|..+.+|||+.+-+||||++|++||| ||
T Consensus 343 Tel-------------GyscyyiHakM~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDiqavNvVIN--------FD--- 398 (459)
T KOG0326|consen 343 TEL-------------GYSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDIQAVNVVIN--------FD--- 398 (459)
T ss_pred Hhc-------------cchhhHHHHHHHHhhhhhhhhhhhccccceeeehhhhhcccccceeeEEEe--------cC---
Confidence 652 788999999999999999999999999999999999999999999999999 66
Q ss_pred CcccccccccCHHHHHHHhcccCCCC-CCEEEEccChhh
Q 001722 631 GMDALQVFPVSRAAADQRAGRAGRTG-PGTCYRLYTESA 668 (1020)
Q Consensus 631 g~~~L~~~piS~as~~QRaGRAGR~g-~G~cyrLyt~~~ 668 (1020)
.|.+.++|.||+||+||.| .|.++.|.|-++
T Consensus 399 -------fpk~aEtYLHRIGRsGRFGhlGlAInLityed 430 (459)
T KOG0326|consen 399 -------FPKNAETYLHRIGRSGRFGHLGLAINLITYED 430 (459)
T ss_pred -------CCCCHHHHHHHccCCccCCCcceEEEEEehhh
Confidence 7999999999999999999 599999998554
No 64
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.95 E-value=3.1e-26 Score=259.14 Aligned_cols=313 Identities=20% Similarity=0.200 Sum_probs=224.2
Q ss_pred cHHHHHHHHHHHHhCCeEEEEecCCCchHHHHHHHHHHhcccCCCEEEEEcccHHHHHHHHHHHHHHhccccCCEEEEE-
Q 001722 324 IFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELGDKVGYA- 402 (1020)
Q Consensus 324 i~~~q~eil~~i~~~q~vII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~lA~qva~rva~e~~~~lG~~VGy~- 402 (1020)
...||..+......+ +++|+.|||=|||+++...+.......+++++++.||+-|+.|.+..+.+.++.+-+..+...
T Consensus 16 ~R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~~~~kvlfLAPTKPLV~Qh~~~~~~v~~ip~~~i~~ltG 94 (542)
T COG1111 16 PRLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRWFGGKVLFLAPTKPLVLQHAEFCRKVTGIPEDEIAALTG 94 (542)
T ss_pred HHHHHHHHHHHHhhc-CeEEEecCCccHHHHHHHHHHHHHHhcCCeEEEecCCchHHHHHHHHHHHHhCCChhheeeecC
Confidence 345788777766655 899999999999999888777665444568999999999999999999998887655544331
Q ss_pred -Eeeee--cCCCCccEEEEchHHHHHHHhcC-CCCCCccEEEEeCCCcCCCCccHHHHHHHHHHhhcCCceEEEEeccC-
Q 001722 403 -IRFED--VTGPSTLIKYMTDGVLLRETLKD-SDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTSATL- 477 (1020)
Q Consensus 403 -ir~e~--~~s~~t~I~~~T~g~LLr~ll~d-~~L~~~s~IIIDEaHERs~~tD~ll~lLk~il~~r~~lklIlmSATl- 477 (1020)
++-+. ......+|+|+||.++.+-+... -++.+++|||+|||| |....-....+.+..+....++.+++||||+
T Consensus 95 ev~p~~R~~~w~~~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAH-RAvGnyAYv~Va~~y~~~~k~~~ilgLTASPG 173 (542)
T COG1111 95 EVRPEEREELWAKKKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAH-RAVGNYAYVFVAKEYLRSAKNPLILGLTASPG 173 (542)
T ss_pred CCChHHHHHHHhhCCEEEeccHHHHhHHhcCccChHHceEEEechhh-hccCcchHHHHHHHHHHhccCceEEEEecCCC
Confidence 11111 11236789999999999887754 468999999999999 7776666666777777778889999999999
Q ss_pred -CHHHHHHHhCCCCeEeecCcc----------cceeeeecCCC------------------------------------c
Q 001722 478 -NAQKFSDFFGSVPIFHIPGRT----------FPVNTLYSKTP------------------------------------C 510 (1020)
Q Consensus 478 -d~~~f~~~f~~~pvi~i~gr~----------~pV~i~y~~~~------------------------------------~ 510 (1020)
+.+++.+...|-.+-+|.-++ .++++.+.+.. .
T Consensus 174 s~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~~Lk~L~~~g~~~~~~~~~~ 253 (542)
T COG1111 174 SDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDLLRDALKPRLKPLKELGVIESSSPVSK 253 (542)
T ss_pred CCHHHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHcCceeccCcccH
Confidence 778887766553322221111 11122111100 0
Q ss_pred hh-------------------------------------------------HHHH------------------------H
Q 001722 511 ED-------------------------------------------------YVEA------------------------A 517 (1020)
Q Consensus 511 ~d-------------------------------------------------yl~~------------------------a 517 (1020)
.+ |+.. +
T Consensus 254 kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~~~~~sk~a~~l~~d~~~~~a 333 (542)
T COG1111 254 KDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEATKGGSKAAKSLLADPYFKRA 333 (542)
T ss_pred hHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhcccchHHHHHHhcChhhHHH
Confidence 00 0000 0
Q ss_pred HHH-------------------HHHHhh-cCCCCCEEEEcCCHHHHHHHHHHHHHHHHHhhccccCCCCCeEEEE-----
Q 001722 518 VKQ-------------------AMTIHI-TSPPGDILIFMTGQDEIEAACFALKERMEQLISSTTREVPELLILP----- 572 (1020)
Q Consensus 518 v~~-------------------~l~i~~-~~~~g~ILVFl~g~~eie~l~~~L~e~l~~l~~~~~~~~~~l~vl~----- 572 (1020)
+.. ++..+. ..+...|+||..-++.++.+...|.+. .+...+.+
T Consensus 334 l~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~-----------~~~~~~rFiGQa~ 402 (542)
T COG1111 334 LRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKI-----------GIKARVRFIGQAS 402 (542)
T ss_pred HHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhc-----------CCcceeEEeeccc
Confidence 000 000001 123457999999999998888877653 12222122
Q ss_pred --ecCCCCHHHHHHHHHHhcCCCeEEEEecchhhccCCCCCeeEEEEcCCccceeccCCCCcccccccccCHHHHHHHhc
Q 001722 573 --IYSQLPADLQAKIFEKAKEGTRKCIVATNIAETSLTVDGIFYVIDTGYGKMKVYNPKMGMDALQVFPVSRAAADQRAG 650 (1020)
Q Consensus 573 --lhs~L~~~eq~~I~~~f~~g~rkVIVATniaEtGItIp~V~~VID~G~~K~~~yd~~~g~~~L~~~piS~as~~QRaG 650 (1020)
...||++.+|..+++.|+.|..+|||||+|+|.|||||++++||- |+| -.|.--++||.|
T Consensus 403 r~~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVif--------YEp----------vpSeIR~IQR~G 464 (542)
T COG1111 403 REGDKGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVIF--------YEP----------VPSEIRSIQRKG 464 (542)
T ss_pred cccccccCHHHHHHHHHHHhcCCceEEEEcccccccCCCCcccEEEE--------ecC----------CcHHHHHHHhhC
Confidence 236799999999999999999999999999999999999999994 773 356778999999
Q ss_pred ccCCCCCCEEEEccChh
Q 001722 651 RAGRTGPGTCYRLYTES 667 (1020)
Q Consensus 651 RAGR~g~G~cyrLyt~~ 667 (1020)
|+||..+|..|.|.++.
T Consensus 465 RTGR~r~Grv~vLvt~g 481 (542)
T COG1111 465 RTGRKRKGRVVVLVTEG 481 (542)
T ss_pred ccccCCCCeEEEEEecC
Confidence 99999999999999976
No 65
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.95 E-value=5.5e-26 Score=282.45 Aligned_cols=326 Identities=22% Similarity=0.261 Sum_probs=233.6
Q ss_pred HHHHHHcCCCcHHHHHHHHHHHHhCCeEEEEecCCCchHHHHHHHHHHhcccCC-CEEEEEcccHHHHHHHHHHHHHHhc
Q 001722 314 TLAEQRQYLPIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTTN-GIVGCTQPRRVAAMSVAKRVSEEMD 392 (1020)
Q Consensus 314 ~l~~~R~~LPi~~~q~eil~~i~~~q~vII~gpTGSGKTtqi~q~Lle~~~~~~-~~Il~tqPrR~lA~qva~rva~e~~ 392 (1020)
+-+-.+....+|.+|.++++.+.++++|||+.+||||||.++..+|++...... .+.+++.|+++||.++++++.+...
T Consensus 61 ~~l~~~g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~~a~AL~lYPtnALa~DQ~~rl~~~~~ 140 (851)
T COG1205 61 SALVKAGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDPSARALLLYPTNALANDQAERLRELIS 140 (851)
T ss_pred HHHHHhccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhCcCccEEEEechhhhHhhHHHHHHHHHH
Confidence 344456667799999999999999999999999999999999999999877643 4789999999999999999966543
Q ss_pred cccCCEEEEEEe-eee-------cCCCCccEEEEchHHHHHHHhcCC-----CCCCccEEEEeCCCc-CCCCccHHHHHH
Q 001722 393 TELGDKVGYAIR-FED-------VTGPSTLIKYMTDGVLLRETLKDS-----DLDKYRVIVMDEAHE-RSLSTDVLFGIL 458 (1020)
Q Consensus 393 ~~lG~~VGy~ir-~e~-------~~s~~t~I~~~T~g~LLr~ll~d~-----~L~~~s~IIIDEaHE-Rs~~tD~ll~lL 458 (1020)
.+|..|+..+- ++. ......+|++++|.||-..++... .+.++.+|||||+|- |+...--+..++
T Consensus 141 -~~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYrGv~GS~vA~ll 219 (851)
T COG1205 141 -DLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYRGVQGSEVALLL 219 (851)
T ss_pred -hCCCcceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceeccccchhHHHHHH
Confidence 44444443321 111 123467899999999988766543 278899999999995 776665555555
Q ss_pred HHHHhhc----CCceEEEEeccC-CHHHHHHHhCCCCeEe-ecCcccce--eeeecCCCc---------hhHHHHHHHHH
Q 001722 459 KKVVARR----RDFKLIVTSATL-NAQKFSDFFGSVPIFH-IPGRTFPV--NTLYSKTPC---------EDYVEAAVKQA 521 (1020)
Q Consensus 459 k~il~~r----~~lklIlmSATl-d~~~f~~~f~~~pvi~-i~gr~~pV--~i~y~~~~~---------~dyl~~av~~~ 521 (1020)
+++.... .++++|.+|||+ |+..|+.-+.+..... +.+...|- ..+....|. .+.. .....+
T Consensus 220 RRL~~~~~~~~~~~q~i~~SAT~~np~e~~~~l~~~~f~~~v~~~g~~~~~~~~~~~~p~~~~~~~~~r~s~~-~~~~~~ 298 (851)
T COG1205 220 RRLLRRLRRYGSPLQIICTSATLANPGEFAEELFGRDFEVPVDEDGSPRGLRYFVRREPPIRELAESIRRSAL-AELATL 298 (851)
T ss_pred HHHHHHHhccCCCceEEEEeccccChHHHHHHhcCCcceeeccCCCCCCCceEEEEeCCcchhhhhhcccchH-HHHHHH
Confidence 5555432 379999999999 6666655444343333 54443332 222222220 0111 111111
Q ss_pred HHHhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHHHhcCCCeEEEEecc
Q 001722 522 MTIHITSPPGDILIFMTGQDEIEAACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATN 601 (1020)
Q Consensus 522 l~i~~~~~~g~ILVFl~g~~eie~l~~~L~e~l~~l~~~~~~~~~~l~vl~lhs~L~~~eq~~I~~~f~~g~rkVIVATn 601 (1020)
.... -..+-++|||+.++..++.+.......+... .......+..++|+|+.++|.+|...++.|..+++++||
T Consensus 299 ~~~~-~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~-----~~~l~~~v~~~~~~~~~~er~~ie~~~~~g~~~~~~st~ 372 (851)
T COG1205 299 AALL-VRNGIQTLVFFRSRKQVELLYLSPRRRLVRE-----GGKLLDAVSTYRAGLHREERRRIEAEFKEGELLGVIATN 372 (851)
T ss_pred HHHH-HHcCceEEEEEehhhhhhhhhhchhHHHhhc-----chhhhhheeeccccCCHHHHHHHHHHHhcCCccEEecch
Confidence 1111 1235679999999999998875555544322 011234688999999999999999999999999999999
Q ss_pred hhhccCCCCCeeEEEEcCCccceeccCCCCccccccccc-CHHHHHHHhcccCCCC-CCEEEEccC
Q 001722 602 IAETSLTVDGIFYVIDTGYGKMKVYNPKMGMDALQVFPV-SRAAADQRAGRAGRTG-PGTCYRLYT 665 (1020)
Q Consensus 602 iaEtGItIp~V~~VID~G~~K~~~yd~~~g~~~L~~~pi-S~as~~QRaGRAGR~g-~G~cyrLyt 665 (1020)
.+|.||||.++..||.+|+ |. |..++.||+|||||.+ .+..+..+.
T Consensus 373 AlelgidiG~ldavi~~g~------------------P~~s~~~~~Q~~GRaGR~~~~~l~~~v~~ 420 (851)
T COG1205 373 ALELGIDIGSLDAVIAYGY------------------PGVSVLSFRQRAGRAGRRGQESLVLVVLR 420 (851)
T ss_pred hhhhceeehhhhhHhhcCC------------------CCchHHHHHHhhhhccCCCCCceEEEEeC
Confidence 9999999999999999884 77 9999999999999998 444444433
No 66
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=99.94 E-value=1.6e-26 Score=255.47 Aligned_cols=305 Identities=22% Similarity=0.266 Sum_probs=222.7
Q ss_pred cHHHHHHHHHHHHhCCeEEEEecCCCchHHHHHHHHHHhccc--------CCCEEEEEcccHHHHHHHHHHHHHHhcccc
Q 001722 324 IFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYT--------TNGIVGCTQPRRVAAMSVAKRVSEEMDTEL 395 (1020)
Q Consensus 324 i~~~q~eil~~i~~~q~vII~gpTGSGKTtqi~q~Lle~~~~--------~~~~Il~tqPrR~lA~qva~rva~e~~~~l 395 (1020)
..-+|+.+|..+++|++++.-|.||||||.+++.++++..+. .+...++++|+|+||.|+++.+.+... .+
T Consensus 42 pTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~iLvPTkEL~qQvy~viekL~~-~c 120 (569)
T KOG0346|consen 42 PTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVILVPTKELAQQVYKVIEKLVE-YC 120 (569)
T ss_pred cchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeEEEechHHHHHHHHHHHHHHHH-HH
Confidence 456788999999999999999999999999988888876443 123678889999999999988755321 11
Q ss_pred CC---EEEEEEeeee-----cCCCCccEEEEchHHHHHHHhcCC--CCCCccEEEEeCCCc---CCCCccHHHHHHHHHH
Q 001722 396 GD---KVGYAIRFED-----VTGPSTLIKYMTDGVLLRETLKDS--DLDKYRVIVMDEAHE---RSLSTDVLFGILKKVV 462 (1020)
Q Consensus 396 G~---~VGy~ir~e~-----~~s~~t~I~~~T~g~LLr~ll~d~--~L~~~s~IIIDEaHE---Rs~~tD~ll~lLk~il 462 (1020)
+. .+.......+ .......|++.||+.|++++..++ .+..++++|||||+- .+..-| ++.+.
T Consensus 121 ~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVvDEADLllsfGYeed-----lk~l~ 195 (569)
T KOG0346|consen 121 SKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVVDEADLLLSFGYEED-----LKKLR 195 (569)
T ss_pred HHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhccchhhhheeeEEechhhhhhhcccHHH-----HHHHH
Confidence 10 1111101111 123467899999999999988776 478899999999992 111111 23333
Q ss_pred h-hcCCceEEEEeccC--CHHHHHHHhCCCCeE-eecCcccc----eeeeecCCCchhHHHHHHHHHHHHhhcCCCCCEE
Q 001722 463 A-RRRDFKLIVTSATL--NAQKFSDFFGSVPIF-HIPGRTFP----VNTLYSKTPCEDYVEAAVKQAMTIHITSPPGDIL 534 (1020)
Q Consensus 463 ~-~r~~lklIlmSATl--d~~~f~~~f~~~pvi-~i~gr~~p----V~i~y~~~~~~dyl~~av~~~l~i~~~~~~g~IL 534 (1020)
. ..+..+.++||||+ |+..+...|...|++ .+.....| +..++......|-.--.+ ..+.+ .--.|++|
T Consensus 196 ~~LPr~~Q~~LmSATl~dDv~~LKkL~l~nPviLkl~e~el~~~dqL~Qy~v~cse~DKfllly-allKL--~LI~gKsl 272 (569)
T KOG0346|consen 196 SHLPRIYQCFLMSATLSDDVQALKKLFLHNPVILKLTEGELPNPDQLTQYQVKCSEEDKFLLLY-ALLKL--RLIRGKSL 272 (569)
T ss_pred HhCCchhhheeehhhhhhHHHHHHHHhccCCeEEEeccccCCCcccceEEEEEeccchhHHHHH-HHHHH--HHhcCceE
Confidence 2 34568999999999 788999999887865 33322222 344554444333322111 11111 12379999
Q ss_pred EEcCCHHHHHHHHHHHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHHHhcCCCeEEEEecch------------
Q 001722 535 IFMTGQDEIEAACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNI------------ 602 (1020)
Q Consensus 535 VFl~g~~eie~l~~~L~e~l~~l~~~~~~~~~~l~vl~lhs~L~~~eq~~I~~~f~~g~rkVIVATni------------ 602 (1020)
||+++.+.+..+.-.|... ++..+.+.|.||...|..|++.|..|...|||||+.
T Consensus 273 iFVNtIdr~YrLkLfLeqF-------------GiksciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~eee~k 339 (569)
T KOG0346|consen 273 IFVNTIDRCYRLKLFLEQF-------------GIKSCILNSELPANSRCHIIEQFNKGLYDIVIATDDSADGDKLEEEVK 339 (569)
T ss_pred EEEechhhhHHHHHHHHHh-------------CcHhhhhcccccccchhhHHHHhhCcceeEEEEccCccchhhhhcccc
Confidence 9999999888776655432 566778999999999999999999999999999991
Q ss_pred -----------------------hhccCCCCCeeEEEEcCCccceeccCCCCcccccccccCHHHHHHHhcccCCCC-CC
Q 001722 603 -----------------------AETSLTVDGIFYVIDTGYGKMKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTG-PG 658 (1020)
Q Consensus 603 -----------------------aEtGItIp~V~~VID~G~~K~~~yd~~~g~~~L~~~piS~as~~QRaGRAGR~g-~G 658 (1020)
+.+|||+..|..||| || .|.+..+|+||+||++|.+ +|
T Consensus 340 gk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlN--------FD----------~P~t~~sYIHRvGRTaRg~n~G 401 (569)
T KOG0346|consen 340 GKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLN--------FD----------FPETVTSYIHRVGRTARGNNKG 401 (569)
T ss_pred ccccccCCCCccccccccCchhchhccccchheeeeee--------cC----------CCCchHHHHHhccccccCCCCC
Confidence 368999999999999 77 7999999999999999998 69
Q ss_pred EEEEccChhh
Q 001722 659 TCYRLYTESA 668 (1020)
Q Consensus 659 ~cyrLyt~~~ 668 (1020)
.+..++.+..
T Consensus 402 talSfv~P~e 411 (569)
T KOG0346|consen 402 TALSFVSPKE 411 (569)
T ss_pred ceEEEecchH
Confidence 9998888654
No 67
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=99.94 E-value=1.6e-25 Score=266.26 Aligned_cols=317 Identities=20% Similarity=0.272 Sum_probs=210.3
Q ss_pred cCCCcHHHHHHHHHHHHhCCeEEEEecCCCchHHHHHHHHHHhc-ccCCCEEEEEcccHHHHHHHHHHHHHHhccccCCE
Q 001722 320 QYLPIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDG-YTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELGDK 398 (1020)
Q Consensus 320 ~~LPi~~~q~eil~~i~~~q~vII~gpTGSGKTtqi~q~Lle~~-~~~~~~Il~tqPrR~lA~qva~rva~e~~~~lG~~ 398 (1020)
..+++..||.++.+..+ ++++||++|||+|||.++...++++. +...++|+++.|++-|..|....+ ..++.....+
T Consensus 59 ~~~~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p~~KiVF~aP~~pLv~QQ~a~~-~~~~~~~~~T 136 (746)
T KOG0354|consen 59 TNLELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEWRPKGKVVFLAPTRPLVNQQIACF-SIYLIPYSVT 136 (746)
T ss_pred CcccccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhcCCcceEEEeeCCchHHHHHHHHH-hhccCcccce
Confidence 56899999999999998 99999999999999999888887764 334589999999999999988555 3333221111
Q ss_pred EEEEEeeeec------CCCCccEEEEchHHHHHHHhcC--CCCCCccEEEEeCCCcCCCCccHHHHHHHHHHhhcC-Cce
Q 001722 399 VGYAIRFEDV------TGPSTLIKYMTDGVLLRETLKD--SDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRR-DFK 469 (1020)
Q Consensus 399 VGy~ir~e~~------~s~~t~I~~~T~g~LLr~ll~d--~~L~~~s~IIIDEaHERs~~tD~ll~lLk~il~~r~-~lk 469 (1020)
| ....... .-...+++|+||.+|.+.+... +.|+.+++||||||| |+...-..-.+.+.++.... ..|
T Consensus 137 -~-~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~H-ra~kn~~Y~~Vmr~~l~~k~~~~q 213 (746)
T KOG0354|consen 137 -G-QLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECH-RTSKNHPYNNIMREYLDLKNQGNQ 213 (746)
T ss_pred -e-eccCccCCCchhhhhcccceEEeChHhhhhhcccccccccceEEEEEEcccc-cccccccHHHHHHHHHHhhhcccc
Confidence 0 0111111 1136789999999999887643 237889999999999 44443333344444444332 339
Q ss_pred EEEEeccC--CHHHHHHHhCCCCe-Eee--------------cCcccceeee----------------------------
Q 001722 470 LIVTSATL--NAQKFSDFFGSVPI-FHI--------------PGRTFPVNTL---------------------------- 504 (1020)
Q Consensus 470 lIlmSATl--d~~~f~~~f~~~pv-i~i--------------~gr~~pV~i~---------------------------- 504 (1020)
||++|||+ +.+...++..+--+ +.+ .-..+|+++.
T Consensus 214 ILgLTASpG~~~~~v~~~I~~L~asldvr~~ssi~~~y~~lr~~~~i~v~~~~~~~~~~~~f~~~i~p~l~~l~~~~l~~ 293 (746)
T KOG0354|consen 214 ILGLTASPGSKLEQVQNVIDNLCASLDVRTESSIKSNYEELREHVQIPVDLSLCERDIEDPFGMIIEPLLQQLQEEGLIE 293 (746)
T ss_pred EEEEecCCCccHHHHHHHHHhhheecccchhhhhhhhHHHHhccCcccCcHHHhhhhhhhhHHHHHHHHHHHHHhcCccc
Confidence 99999999 56666655543100 000 0001111100
Q ss_pred -------ecC------------CCch-----------hH------------------HHH-----HHH------------
Q 001722 505 -------YSK------------TPCE-----------DY------------------VEA-----AVK------------ 519 (1020)
Q Consensus 505 -------y~~------------~~~~-----------dy------------------l~~-----av~------------ 519 (1020)
|.. .+.. +| .+. .++
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir~~~~l~~~~~f~~e~~~~k~~~~~~e~~~~ 373 (746)
T KOG0354|consen 294 ISDKSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDGIRFVDALDYLEDFYEEVALKKYLKLELEARLI 373 (746)
T ss_pred cccccccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcchhhHHHHhhhhhhccccchhHHHHHHhcchhh
Confidence 000 0000 00 000 000
Q ss_pred ----------------------------H-HHHHhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHHHhhccccCCCCCeEE
Q 001722 520 ----------------------------Q-AMTIHITSPPGDILIFMTGQDEIEAACFALKERMEQLISSTTREVPELLI 570 (1020)
Q Consensus 520 ----------------------------~-~l~i~~~~~~g~ILVFl~g~~eie~l~~~L~e~l~~l~~~~~~~~~~l~v 570 (1020)
. +.......+...++||+.+++.++.+...|.+ +..+ .-.+.+.|
T Consensus 374 ~~~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~-~~~~-----~ir~~~fi 447 (746)
T KOG0354|consen 374 RNFTENMNELEHLSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQ-LHEL-----GIKAEIFI 447 (746)
T ss_pred HHHHHHHHhhhhhhcCCCccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHh-hhhc-----ccccceee
Confidence 0 00111123456799999999999998888865 2111 11122223
Q ss_pred EEec----CCCCHHHHHHHHHHhcCCCeEEEEecchhhccCCCCCeeEEEEcCCccceeccCCCCcccccccccCHHHHH
Q 001722 571 LPIY----SQLPADLQAKIFEKAKEGTRKCIVATNIAETSLTVDGIFYVIDTGYGKMKVYNPKMGMDALQVFPVSRAAAD 646 (1020)
Q Consensus 571 l~lh----s~L~~~eq~~I~~~f~~g~rkVIVATniaEtGItIp~V~~VID~G~~K~~~yd~~~g~~~L~~~piS~as~~ 646 (1020)
..-+ .+|++.+|..+++.|+.|..+|||||+|+|.||||+.++.||- || .-.|.-..+
T Consensus 448 Gq~~s~~~~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ec~lVIc--------Yd----------~~snpIrmI 509 (746)
T KOG0354|consen 448 GQGKSTQSTGMTQKEQKEVLDKFRDGEINVLVATSVAEEGLDIGECNLVIC--------YD----------YSSNPIRMV 509 (746)
T ss_pred eccccccccccCHHHHHHHHHHHhCCCccEEEEecchhccCCcccccEEEE--------ec----------CCccHHHHH
Confidence 2222 4899999999999999999999999999999999999999996 66 345667899
Q ss_pred HHhcccCCCCCCEEEEccCh
Q 001722 647 QRAGRAGRTGPGTCYRLYTE 666 (1020)
Q Consensus 647 QRaGRAGR~g~G~cyrLyt~ 666 (1020)
||.|| ||...|+|+.|++.
T Consensus 510 QrrGR-gRa~ns~~vll~t~ 528 (746)
T KOG0354|consen 510 QRRGR-GRARNSKCVLLTTG 528 (746)
T ss_pred HHhcc-ccccCCeEEEEEcc
Confidence 99999 99999999999994
No 68
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.94 E-value=5.9e-25 Score=262.27 Aligned_cols=297 Identities=14% Similarity=0.097 Sum_probs=197.1
Q ss_pred CCCcHHHHHHHHHHHHhCCeEEEEecCCCchHHHHHHHHHHhcccCCCEEEEEcccHHHHHHHHHHHHHHhccccCCEEE
Q 001722 321 YLPIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELGDKVG 400 (1020)
Q Consensus 321 ~LPi~~~q~eil~~i~~~q~vII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~lA~qva~rva~e~~~~lG~~VG 400 (1020)
...++++|.+++..+..+...++++|||+|||..+...+........++++|++|+++|+.|+.+++.+..... ...++
T Consensus 112 ~~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~l~~~~~~~~~~~vLilvpt~eL~~Q~~~~l~~~~~~~-~~~~~ 190 (501)
T PHA02558 112 KIEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYLLSRYYLENYEGKVLIIVPTTSLVTQMIDDFVDYRLFP-REAMH 190 (501)
T ss_pred cCCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHHHhcCCCeEEEEECcHHHHHHHHHHHHHhcccc-cccee
Confidence 36788999999999999999999999999999976543221111223489999999999999999996533221 11121
Q ss_pred EEEeeeecCCCCccEEEEchHHHHHHHhcCCCCCCccEEEEeCCCcCCCCccHHHHHHHHHHhhcCCceEEEEeccCCH-
Q 001722 401 YAIRFEDVTGPSTLIKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTSATLNA- 479 (1020)
Q Consensus 401 y~ir~e~~~s~~t~I~~~T~g~LLr~ll~d~~L~~~s~IIIDEaHERs~~tD~ll~lLk~il~~r~~lklIlmSATld~- 479 (1020)
. +...........|+++|++.|.+.. ...+.++++|||||||.-. . .-+..+++.+ .+...++++|||+.-
T Consensus 191 ~-i~~g~~~~~~~~I~VaT~qsl~~~~--~~~~~~~~~iIvDEaH~~~-~-~~~~~il~~~---~~~~~~lGLTATp~~~ 262 (501)
T PHA02558 191 K-IYSGTAKDTDAPIVVSTWQSAVKQP--KEWFDQFGMVIVDECHLFT-G-KSLTSIITKL---DNCKFKFGLTGSLRDG 262 (501)
T ss_pred E-EecCcccCCCCCEEEeeHHHHhhch--hhhccccCEEEEEchhccc-c-hhHHHHHHhh---hccceEEEEeccCCCc
Confidence 1 1111122245789999999987643 2357899999999999532 2 2222333222 123568999999932
Q ss_pred H----HHHHHhCCCCeEeec-------Ccccceeee--ecCCCc--------hhHHH------------HHHHHHHHHhh
Q 001722 480 Q----KFSDFFGSVPIFHIP-------GRTFPVNTL--YSKTPC--------EDYVE------------AAVKQAMTIHI 526 (1020)
Q Consensus 480 ~----~f~~~f~~~pvi~i~-------gr~~pV~i~--y~~~~~--------~dyl~------------~av~~~l~i~~ 526 (1020)
. .+..+|+.. ...+. |...++.+. +...+. .+|-. ..+.......
T Consensus 263 ~~~~~~~~~~fG~i-~~~v~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Rn~~I~~~~~~~- 340 (501)
T PHA02558 263 KANILQYVGLFGDI-FKPVTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEEIKYITSHTKRNKWIANLALKL- 340 (501)
T ss_pred cccHHHHHHhhCCc-eEEecHHHHHhCCCcCCceEEEEeccCCHHHhhhhcccchHHHHHHHhccHHHHHHHHHHHHHH-
Confidence 1 134456531 11111 111111111 111110 11110 1111111111
Q ss_pred cCCCCCEEEEcCCHHHHHHHHHHHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHHHhcCCCeEEEEec-chhhc
Q 001722 527 TSPPGDILIFMTGQDEIEAACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVAT-NIAET 605 (1020)
Q Consensus 527 ~~~~g~ILVFl~g~~eie~l~~~L~e~l~~l~~~~~~~~~~l~vl~lhs~L~~~eq~~I~~~f~~g~rkVIVAT-niaEt 605 (1020)
...++.+|||+...++++.+++.|.+. +..+..+||+++.++|..+++.|..|...||||| +++++
T Consensus 341 ~~~~~~~lV~~~~~~h~~~L~~~L~~~-------------g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~e 407 (501)
T PHA02558 341 AKKGENTFVMFKYVEHGKPLYEMLKKV-------------YDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFST 407 (501)
T ss_pred HhcCCCEEEEEEEHHHHHHHHHHHHHc-------------CCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceecc
Confidence 234678999999999999888888652 4578999999999999999999999999999998 89999
Q ss_pred cCCCCCeeEEEEcCCccceeccCCCCcccccccccCHHHHHHHhcccCCCCCCE
Q 001722 606 SLTVDGIFYVIDTGYGKMKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTGPGT 659 (1020)
Q Consensus 606 GItIp~V~~VID~G~~K~~~yd~~~g~~~L~~~piS~as~~QRaGRAGR~g~G~ 659 (1020)
|+|+|++++||. ++ .+.|...|.||+||+||.++|+
T Consensus 408 G~Dip~ld~vIl--------~~----------p~~s~~~~~QriGR~~R~~~~K 443 (501)
T PHA02558 408 GISIKNLHHVIF--------AH----------PSKSKIIVLQSIGRVLRKHGSK 443 (501)
T ss_pred ccccccccEEEE--------ec----------CCcchhhhhhhhhccccCCCCC
Confidence 999999999995 22 4567889999999999999864
No 69
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.94 E-value=2.2e-26 Score=266.45 Aligned_cols=322 Identities=20% Similarity=0.249 Sum_probs=240.5
Q ss_pred CCcHHHHHHHHHHHHhCCeEEEEecCCCchHHHHHHHHHHhcccCCCEEEEEcccHHHHHHHHHHHHHHhccccCCEEEE
Q 001722 322 LPIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELGDKVGY 401 (1020)
Q Consensus 322 LPi~~~q~eil~~i~~~q~vII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~lA~qva~rva~e~~~~lG~~VGy 401 (1020)
+-+.++|...+..|.+++.|+|+|.|.+|||.++...++... ..+.+|++|.|-++|.+|.++.+..||+ .||.
T Consensus 128 F~LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sL-r~kQRVIYTSPIKALSNQKYREl~~EF~-----DVGL 201 (1041)
T KOG0948|consen 128 FTLDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSL-REKQRVIYTSPIKALSNQKYRELLEEFK-----DVGL 201 (1041)
T ss_pred cccCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHH-HhcCeEEeeChhhhhcchhHHHHHHHhc-----ccce
Confidence 347789999999999999999999999999988877666554 4467999999999999999999999987 3443
Q ss_pred EEeeeecCCCCccEEEEchHHHHHHHhcCC-CCCCccEEEEeCCC-----cCCCCccHHHHHHHHHHhhcCCceEEEEec
Q 001722 402 AIRFEDVTGPSTLIKYMTDGVLLRETLKDS-DLDKYRVIVMDEAH-----ERSLSTDVLFGILKKVVARRRDFKLIVTSA 475 (1020)
Q Consensus 402 ~ir~e~~~s~~t~I~~~T~g~LLr~ll~d~-~L~~~s~IIIDEaH-----ERs~~tD~ll~lLk~il~~r~~lklIlmSA 475 (1020)
+.++-..+|++..++||+++|..++.... .+..+..||+||+| ||++-.+--+.+ ..++++.|++||
T Consensus 202 -MTGDVTInP~ASCLVMTTEILRsMLYRGSEvmrEVaWVIFDEIHYMRDkERGVVWEETIIl------lP~~vr~VFLSA 274 (1041)
T KOG0948|consen 202 -MTGDVTINPDASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDKERGVVWEETIIL------LPDNVRFVFLSA 274 (1041)
T ss_pred -eecceeeCCCCceeeeHHHHHHHHHhccchHhheeeeEEeeeehhccccccceeeeeeEEe------ccccceEEEEec
Confidence 33444567889999999999988877654 48899999999999 677765532222 245789999999
Q ss_pred cC-CHHHHHHHhC-----CCCeEeecCcccceeeeecCC----------CchhHHHHHHHHHHHH---------------
Q 001722 476 TL-NAQKFSDFFG-----SVPIFHIPGRTFPVNTLYSKT----------PCEDYVEAAVKQAMTI--------------- 524 (1020)
Q Consensus 476 Tl-d~~~f~~~f~-----~~pvi~i~gr~~pV~i~y~~~----------~~~dyl~~av~~~l~i--------------- 524 (1020)
|+ |+..|++|.. -|.++...-|.-|++.+..+. ...++-+.....++..
T Consensus 275 TiPNA~qFAeWI~~ihkQPcHVVYTdyRPTPLQHyifP~ggdGlylvVDek~~FrednF~~am~~l~~~~~~~~~~~~~~ 354 (1041)
T KOG0948|consen 275 TIPNARQFAEWICHIHKQPCHVVYTDYRPTPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSVLRKAGESDGKKKANK 354 (1041)
T ss_pred cCCCHHHHHHHHHHHhcCCceEEeecCCCCcceeeeecCCCCeeEEEEecccccchHHHHHHHHHhhccCCCcccccccc
Confidence 99 9999999984 367788888888887763221 0111111111111111
Q ss_pred -----------------------hhcCCCCCEEEEcCCHHHHHHHHHHHHH------------------HHHHhhccccC
Q 001722 525 -----------------------HITSPPGDILIFMTGQDEIEAACFALKE------------------RMEQLISSTTR 563 (1020)
Q Consensus 525 -----------------------~~~~~~g~ILVFl~g~~eie~l~~~L~e------------------~l~~l~~~~~~ 563 (1020)
.......+++||.-++++||..+-.+.+ .+..+. ...+
T Consensus 355 k~~kG~~~~~~~~~s~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF~nAi~~Ls-eeDr 433 (1041)
T KOG0948|consen 355 KGRKGGTGGKGPGDSDIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIFNNAIDQLS-EEDR 433 (1041)
T ss_pred ccccCCcCCCCCCcccHHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHHHHHHHhcC-hhhc
Confidence 1112234799999999999998865532 111111 1112
Q ss_pred CCCCe---------EEEEecCCCCHHHHHHHHHHhcCCCeEEEEecchhhccCCCCCeeEEEEcCCccceeccCCCCccc
Q 001722 564 EVPEL---------LILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAETSLTVDGIFYVIDTGYGKMKVYNPKMGMDA 634 (1020)
Q Consensus 564 ~~~~l---------~vl~lhs~L~~~eq~~I~~~f~~g~rkVIVATniaEtGItIp~V~~VID~G~~K~~~yd~~~g~~~ 634 (1020)
..|.+ .|..+||||-+-....|+-.|.+|-+||++||.++..|+|.|.-++|. ...+.|| .
T Consensus 434 ~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMPAkTVvF----T~~rKfD------G 503 (1041)
T KOG0948|consen 434 ELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMPAKTVVF----TAVRKFD------G 503 (1041)
T ss_pred cchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCcceeEEE----eeccccC------C
Confidence 22221 367799999999999999999999999999999999999999877776 3334455 4
Q ss_pred ccccccCHHHHHHHhcccCCCC---CCEEEEccChh
Q 001722 635 LQVFPVSRAAADQRAGRAGRTG---PGTCYRLYTES 667 (1020)
Q Consensus 635 L~~~piS~as~~QRaGRAGR~g---~G~cyrLyt~~ 667 (1020)
-...|+|--.|+|++|||||.| .|+|+.+..+.
T Consensus 504 ~~fRwissGEYIQMSGRAGRRG~DdrGivIlmiDek 539 (1041)
T KOG0948|consen 504 KKFRWISSGEYIQMSGRAGRRGIDDRGIVILMIDEK 539 (1041)
T ss_pred cceeeecccceEEecccccccCCCCCceEEEEecCc
Confidence 4458999999999999999999 59999998754
No 70
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=99.94 E-value=5e-26 Score=274.80 Aligned_cols=328 Identities=20% Similarity=0.228 Sum_probs=238.5
Q ss_pred cchhhhhHHHHHHHcCCCcHHHHHHHHHHHHhCCeEEEEecCCCchHHHHHHHHHHhccc-------CCCEEEEEcccHH
Q 001722 306 VSDFAKSKTLAEQRQYLPIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYT-------TNGIVGCTQPRRV 378 (1020)
Q Consensus 306 ~~~~~~~~~l~~~R~~LPi~~~q~eil~~i~~~q~vII~gpTGSGKTtqi~q~Lle~~~~-------~~~~Il~tqPrR~ 378 (1020)
.....+....+++-.+=+..++|.++|++|..+++||.+|.||||||..+.++++.+... .+...+++.|+|.
T Consensus 370 ~gl~~~il~tlkkl~y~k~~~IQ~qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr~~~~gdGPi~li~aPtre 449 (997)
T KOG0334|consen 370 CGLSSKILETLKKLGYEKPTPIQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPLEEGDGPIALILAPTRE 449 (997)
T ss_pred CCchHHHHHHHHHhcCCCCcchhhhhcchhccCcceEEeeccCCccchhhhcchhhhhhcCCChhhCCCceEEEEcCCHH
Confidence 333344455556667789999999999999999999999999999999987777654322 2446788899999
Q ss_pred HHHHHHHHHHHHhccccCCEEEEEEeeee------cCCCCccEEEEchHHHHHHHhcCC----CCCCccEEEEeCCCcCC
Q 001722 379 AAMSVAKRVSEEMDTELGDKVGYAIRFED------VTGPSTLIKYMTDGVLLRETLKDS----DLDKYRVIVMDEAHERS 448 (1020)
Q Consensus 379 lA~qva~rva~e~~~~lG~~VGy~ir~e~------~~s~~t~I~~~T~g~LLr~ll~d~----~L~~~s~IIIDEaHERs 448 (1020)
+|.|+.+.+... .+.+|..+--...... ....++.|++||+|..+..+..+. .|.++.++|+|||+ |.
T Consensus 450 la~QI~r~~~kf-~k~l~ir~v~vygg~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv~deaD-rm 527 (997)
T KOG0334|consen 450 LAMQIHREVRKF-LKLLGIRVVCVYGGSGISQQIAELKRGAEIVVCTPGRMIDILCANSGRVTNLRRVTYLVLDEAD-RM 527 (997)
T ss_pred HHHHHHHHHHHH-HhhcCceEEEecCCccHHHHHHHHhcCCceEEeccchhhhhHhhcCCccccccccceeeechhh-hh
Confidence 999999988554 3445544332222211 112468999999999888765432 36677799999999 66
Q ss_pred CCccHHHHHHHHHHhhcCCceEEEEeccCC--HHHHHHHhCCCCeEe-ecCccc---ceeeeecCCC-chhHHHHHHHHH
Q 001722 449 LSTDVLFGILKKVVARRRDFKLIVTSATLN--AQKFSDFFGSVPIFH-IPGRTF---PVNTLYSKTP-CEDYVEAAVKQA 521 (1020)
Q Consensus 449 ~~tD~ll~lLk~il~~r~~lklIlmSATld--~~~f~~~f~~~pvi~-i~gr~~---pV~i~y~~~~-~~dyl~~av~~~ 521 (1020)
.+..+.-...+.+-..+|+.+.+++|||.. ...++.-....|+-. +.|+.. .|+..+.-.+ ...-+ ++..
T Consensus 528 fdmgfePq~~~Ii~nlrpdrQtvlfSatfpr~m~~la~~vl~~Pveiiv~~~svV~k~V~q~v~V~~~e~eKf---~kL~ 604 (997)
T KOG0334|consen 528 FDMGFEPQITRILQNLRPDRQTVLFSATFPRSMEALARKVLKKPVEIIVGGRSVVCKEVTQVVRVCAIENEKF---LKLL 604 (997)
T ss_pred heeccCcccchHHhhcchhhhhhhhhhhhhHHHHHHHHHhhcCCeeEEEccceeEeccceEEEEEecCchHHH---HHHH
Confidence 665554444444444589999999999995 455555444456543 233321 1222211111 11111 1111
Q ss_pred HHHhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHHHhcCCCeEEEEecc
Q 001722 522 MTIHITSPPGDILIFMTGQDEIEAACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATN 601 (1020)
Q Consensus 522 l~i~~~~~~g~ILVFl~g~~eie~l~~~L~e~l~~l~~~~~~~~~~l~vl~lhs~L~~~eq~~I~~~f~~g~rkVIVATn 601 (1020)
..+......+++||||..++.+..+...|.+ .++.+..+||+.++.+|..+++.|+++..+++|||+
T Consensus 605 eLl~e~~e~~~tiiFv~~qe~~d~l~~~L~~-------------ag~~~~slHGgv~q~dR~sti~dfK~~~~~LLvaTs 671 (997)
T KOG0334|consen 605 ELLGERYEDGKTIIFVDKQEKADALLRDLQK-------------AGYNCDSLHGGVDQHDRSSTIEDFKNGVVNLLVATS 671 (997)
T ss_pred HHHHHHhhcCCEEEEEcCchHHHHHHHHHHh-------------cCcchhhhcCCCchHHHHhHHHHHhccCceEEEehh
Confidence 2222333489999999999999999888864 367777799999999999999999999999999999
Q ss_pred hhhccCCCCCeeEEEEcCCccceeccCCCCcccccccccCHHHHHHHhcccCCCCC-CEEEEccChhhH
Q 001722 602 IAETSLTVDGIFYVIDTGYGKMKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTGP-GTCYRLYTESAY 669 (1020)
Q Consensus 602 iaEtGItIp~V~~VID~G~~K~~~yd~~~g~~~L~~~piS~as~~QRaGRAGR~g~-G~cyrLyt~~~~ 669 (1020)
++++|+++..+..||+ || +|---+.|.||.||+||+|+ |.||.+.++.+.
T Consensus 672 vvarGLdv~~l~Lvvn--------yd----------~pnh~edyvhR~gRTgragrkg~AvtFi~p~q~ 722 (997)
T KOG0334|consen 672 VVARGLDVKELILVVN--------YD----------FPNHYEDYVHRVGRTGRAGRKGAAVTFITPDQL 722 (997)
T ss_pred hhhcccccccceEEEE--------cc----------cchhHHHHHHHhcccccCCccceeEEEeChHHh
Confidence 9999999999999998 77 56667789999999999996 999999998543
No 71
>PRK13766 Hef nuclease; Provisional
Probab=99.94 E-value=8.4e-25 Score=274.22 Aligned_cols=314 Identities=18% Similarity=0.203 Sum_probs=211.8
Q ss_pred CCCcHHHHHHHHHHHHhCCeEEEEecCCCchHHHHHHHHHHhcccCCCEEEEEcccHHHHHHHHHHHHHHhccccCCEEE
Q 001722 321 YLPIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELGDKVG 400 (1020)
Q Consensus 321 ~LPi~~~q~eil~~i~~~q~vII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~lA~qva~rva~e~~~~lG~~VG 400 (1020)
.+....||.++...+..+ +++|++|||+|||.++...+.......+++++++.|++.|+.|.++.+.+.++.. +..++
T Consensus 13 ~~~~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~l~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~-~~~v~ 90 (773)
T PRK13766 13 TIEARLYQQLLAATALKK-NTLVVLPTGLGKTAIALLVIAERLHKKGGKVLILAPTKPLVEQHAEFFRKFLNIP-EEKIV 90 (773)
T ss_pred cCCccHHHHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHHHHHHHhCCC-CceEE
Confidence 456678899998888776 8999999999999987766665544456799999999999999999987766532 12222
Q ss_pred EEEeeeec------CCCCccEEEEchHHHHHHHhcC-CCCCCccEEEEeCCCcCCCCccHHHHHHHHHHhhcCCceEEEE
Q 001722 401 YAIRFEDV------TGPSTLIKYMTDGVLLRETLKD-SDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVT 473 (1020)
Q Consensus 401 y~ir~e~~------~s~~t~I~~~T~g~LLr~ll~d-~~L~~~s~IIIDEaHERs~~tD~ll~lLk~il~~r~~lklIlm 473 (1020)
. +..+.. ......|+++|++++...++.. ..+.++++|||||||. .........+++......+...+++|
T Consensus 91 ~-~~g~~~~~~r~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH~-~~~~~~~~~i~~~~~~~~~~~~il~l 168 (773)
T PRK13766 91 V-FTGEVSPEKRAELWEKAKVIVATPQVIENDLIAGRISLEDVSLLIFDEAHR-AVGNYAYVYIAERYHEDAKNPLVLGL 168 (773)
T ss_pred E-EeCCCCHHHHHHHHhCCCEEEECHHHHHHHHHcCCCChhhCcEEEEECCcc-ccccccHHHHHHHHHhcCCCCEEEEE
Confidence 1 111111 1125689999999998877654 3478899999999994 33222222333444444556789999
Q ss_pred eccC--CHHHHHHHhCCC--CeEeecCccc--------ceeeee--cC--------------------------------
Q 001722 474 SATL--NAQKFSDFFGSV--PIFHIPGRTF--------PVNTLY--SK-------------------------------- 507 (1020)
Q Consensus 474 SATl--d~~~f~~~f~~~--pvi~i~gr~~--------pV~i~y--~~-------------------------------- 507 (1020)
|||+ +.+.+.....+- ..+.+..+.. +..+.+ ..
T Consensus 169 TaTP~~~~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~l~~~~~~~l~~l~~~~~~~~~ 248 (773)
T PRK13766 169 TASPGSDEEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRVELPEELKEIRDLLNEALKDRLKKLKELGVIVSI 248 (773)
T ss_pred EcCCCCCHHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHHCCCcccC
Confidence 9999 333443333221 1111110000 000000 00
Q ss_pred C---Cch-------------------------------------------------hHHHH-------------------
Q 001722 508 T---PCE-------------------------------------------------DYVEA------------------- 516 (1020)
Q Consensus 508 ~---~~~-------------------------------------------------dyl~~------------------- 516 (1020)
. ... .|+..
T Consensus 249 ~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~~~~~~~~~~~~~~~l~~ 328 (773)
T PRK13766 249 SPDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYLERLREEARSSGGSKASKRLVE 328 (773)
T ss_pred CCCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhhccccCCcHHHHHHHh
Confidence 0 000 00000
Q ss_pred ------H----------------HHHHHHHh-hcCCCCCEEEEcCCHHHHHHHHHHHHHHHHHhhccccCCCCCeEEEEe
Q 001722 517 ------A----------------VKQAMTIH-ITSPPGDILIFMTGQDEIEAACFALKERMEQLISSTTREVPELLILPI 573 (1020)
Q Consensus 517 ------a----------------v~~~l~i~-~~~~~g~ILVFl~g~~eie~l~~~L~e~l~~l~~~~~~~~~~l~vl~l 573 (1020)
. +..++... ...+++++||||.++..++.+++.|.. .++.+..+
T Consensus 329 ~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~-------------~~~~~~~~ 395 (773)
T PRK13766 329 DPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEK-------------EGIKAVRF 395 (773)
T ss_pred CHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHh-------------CCCceEEE
Confidence 0 00000000 013568899999999999998888843 14445666
Q ss_pred cCC--------CCHHHHHHHHHHhcCCCeEEEEecchhhccCCCCCeeEEEEcCCccceeccCCCCcccccccccCHHHH
Q 001722 574 YSQ--------LPADLQAKIFEKAKEGTRKCIVATNIAETSLTVDGIFYVIDTGYGKMKVYNPKMGMDALQVFPVSRAAA 645 (1020)
Q Consensus 574 hs~--------L~~~eq~~I~~~f~~g~rkVIVATniaEtGItIp~V~~VID~G~~K~~~yd~~~g~~~L~~~piS~as~ 645 (1020)
||. |+..+|..+++.|..|..+|||||+++++|+|+|++++||. || .|.+...+
T Consensus 396 ~g~~~~~~~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~~~VI~--------yd----------~~~s~~r~ 457 (773)
T PRK13766 396 VGQASKDGDKGMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVIF--------YE----------PVPSEIRS 457 (773)
T ss_pred EccccccccCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEE--------eC----------CCCCHHHH
Confidence 665 99999999999999999999999999999999999999997 77 46788899
Q ss_pred HHHhcccCCCCCCEEEEccChhhH
Q 001722 646 DQRAGRAGRTGPGTCYRLYTESAY 669 (1020)
Q Consensus 646 ~QRaGRAGR~g~G~cyrLyt~~~~ 669 (1020)
+||+||+||.++|.+|.|+++...
T Consensus 458 iQR~GR~gR~~~~~v~~l~~~~t~ 481 (773)
T PRK13766 458 IQRKGRTGRQEEGRVVVLIAKGTR 481 (773)
T ss_pred HHHhcccCcCCCCEEEEEEeCCCh
Confidence 999999999999999999986543
No 72
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.93 E-value=2.6e-25 Score=263.03 Aligned_cols=324 Identities=18% Similarity=0.231 Sum_probs=235.3
Q ss_pred CCCcHHHHHHHHHHHHhCCeEEEEecCCCchHHHHHHHHHHhcccCCCEEEEEcccHHHHHHHHHHHHHHhccccCCEEE
Q 001722 321 YLPIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELGDKVG 400 (1020)
Q Consensus 321 ~LPi~~~q~eil~~i~~~q~vII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~lA~qva~rva~e~~~~lG~~VG 400 (1020)
.+-+..+|++++.++..+..|+|.|+|.+|||.++...+.-. .....+.++|.|.++|.+|..+.+.+.+|. ||
T Consensus 295 pFelD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAiala-q~h~TR~iYTSPIKALSNQKfRDFk~tF~D-----vg 368 (1248)
T KOG0947|consen 295 PFELDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALA-QKHMTRTIYTSPIKALSNQKFRDFKETFGD-----VG 368 (1248)
T ss_pred CCCccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHH-HhhccceEecchhhhhccchHHHHHHhccc-----cc
Confidence 455789999999999999999999999999999876654432 233568999999999999999999877762 34
Q ss_pred EEEeeeecCCCCccEEEEchHHHHHHHhcCCC-CCCccEEEEeCCC-----cCCCCccHHHHHHHHHHhhcCCceEEEEe
Q 001722 401 YAIRFEDVTGPSTLIKYMTDGVLLRETLKDSD-LDKYRVIVMDEAH-----ERSLSTDVLFGILKKVVARRRDFKLIVTS 474 (1020)
Q Consensus 401 y~ir~e~~~s~~t~I~~~T~g~LLr~ll~d~~-L~~~s~IIIDEaH-----ERs~~tD~ll~lLk~il~~r~~lklIlmS 474 (1020)
-+.++....|...+++||+++|..++....+ +.++..||+||+| ||++-.+-.+.+| .+++++|++|
T Consensus 369 -LlTGDvqinPeAsCLIMTTEILRsMLYrgadliRDvE~VIFDEVHYiND~eRGvVWEEViIMl------P~HV~~IlLS 441 (1248)
T KOG0947|consen 369 -LLTGDVQINPEASCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYINDVERGVVWEEVIIML------PRHVNFILLS 441 (1248)
T ss_pred -eeecceeeCCCcceEeehHHHHHHHHhcccchhhccceEEEeeeeecccccccccceeeeeec------cccceEEEEe
Confidence 4667778889999999999999988877654 6889999999999 6887666443333 4579999999
Q ss_pred ccC-CHHHHHHHhCCC---C--eEeecCcccceeeeecCC-Cc-------hhHHHHHHH---------------------
Q 001722 475 ATL-NAQKFSDFFGSV---P--IFHIPGRTFPVNTLYSKT-PC-------EDYVEAAVK--------------------- 519 (1020)
Q Consensus 475 ATl-d~~~f~~~f~~~---p--vi~i~gr~~pV~i~y~~~-~~-------~dyl~~av~--------------------- 519 (1020)
||+ |...|++|.|.. . |+....|..|++.++... .. .-++..-++
T Consensus 442 ATVPN~~EFA~WIGRtK~K~IyViST~kRPVPLEh~l~t~~~l~kiidq~g~fl~~~~~~a~~~~~~~ak~~~~~~~~~~ 521 (1248)
T KOG0947|consen 442 ATVPNTLEFADWIGRTKQKTIYVISTSKRPVPLEHYLYTKKSLFKIIDQNGIFLLKGIKDAKDSLKKEAKFVDVEKSDAR 521 (1248)
T ss_pred ccCCChHHHHHHhhhccCceEEEEecCCCccceEEEEEeccceehhhcccchhhhhcchhhhhhhccccccccccccccc
Confidence 999 999999999853 2 344445666666553211 00 001110000
Q ss_pred --------------------------------HHHH--Hhh-cCCCCCEEEEcCCHHHHHHHHHHHHHH-----------
Q 001722 520 --------------------------------QAMT--IHI-TSPPGDILIFMTGQDEIEAACFALKER----------- 553 (1020)
Q Consensus 520 --------------------------------~~l~--i~~-~~~~g~ILVFl~g~~eie~l~~~L~e~----------- 553 (1020)
+.+. -|+ ...--+++|||-++..|++.++.|...
T Consensus 522 ~~rgs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~L~k~~lLP~VvFvFSkkrCde~a~~L~~~nL~~~~EKseV 601 (1248)
T KOG0947|consen 522 GGRGSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINHLRKKNLLPVVVFVFSKKRCDEYADYLTNLNLTDSKEKSEV 601 (1248)
T ss_pred ccccccccCCcCCCCCCCcccccccccccccchHHHHHHHHhhcccCceEEEEEccccHHHHHHHHhccCcccchhHHHH
Confidence 0000 011 112236899999999999998877431
Q ss_pred ---HHH---hhccccCCCCCe---------EEEEecCCCCHHHHHHHHHHhcCCCeEEEEecchhhccCCCCCeeEEEEc
Q 001722 554 ---MEQ---LISSTTREVPEL---------LILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAETSLTVDGIFYVIDT 618 (1020)
Q Consensus 554 ---l~~---l~~~~~~~~~~l---------~vl~lhs~L~~~eq~~I~~~f~~g~rkVIVATniaEtGItIp~V~~VID~ 618 (1020)
+++ ......++.|.+ .+..||||+-+-...-|+..|..|.+||++||-++++|||.|.-.+|+++
T Consensus 602 ~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlVKVLFATETFAMGVNMPARtvVF~S 681 (1248)
T KOG0947|consen 602 HLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLVKVLFATETFAMGVNMPARTVVFSS 681 (1248)
T ss_pred HHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCceEEEeehhhhhhhcCCCceeEEeee
Confidence 111 011112222222 47789999999999999999999999999999999999999988888863
Q ss_pred CCccceeccCCCCcccccccccCHHHHHHHhcccCCCC---CCEEEEccChh
Q 001722 619 GYGKMKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTG---PGTCYRLYTES 667 (1020)
Q Consensus 619 G~~K~~~yd~~~g~~~L~~~piS~as~~QRaGRAGR~g---~G~cyrLyt~~ 667 (1020)
= ...+.-...-+.+-.|.|++|||||.| .|.++.+....
T Consensus 682 l----------~KhDG~efR~L~PGEytQMAGRAGRRGlD~tGTVii~~~~~ 723 (1248)
T KOG0947|consen 682 L----------RKHDGNEFRELLPGEYTQMAGRAGRRGLDETGTVIIMCKDS 723 (1248)
T ss_pred h----------hhccCcceeecCChhHHhhhccccccccCcCceEEEEecCC
Confidence 2 122222334677889999999999999 49888887643
No 73
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.93 E-value=1e-25 Score=258.34 Aligned_cols=307 Identities=19% Similarity=0.249 Sum_probs=222.2
Q ss_pred HHHHHHHHHHHhCCeEEEEecCCCchHHHHHHHHHHhcccC-------CCEEEEEcccHHHHHHHHHHHHHHhccccC--
Q 001722 326 SVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTT-------NGIVGCTQPRRVAAMSVAKRVSEEMDTELG-- 396 (1020)
Q Consensus 326 ~~q~eil~~i~~~q~vII~gpTGSGKTtqi~q~Lle~~~~~-------~~~Il~tqPrR~lA~qva~rva~e~~~~lG-- 396 (1020)
+.|.+++..+..+++++.|+|||||||+.+..+++...... +-+.+++.|+|+||.|++..+.+. ...-|
T Consensus 161 ~iq~~aipvfl~~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~~~~~~gl~a~Il~ptreLa~Qi~re~~k~-~~~~~t~ 239 (593)
T KOG0344|consen 161 PIQKQAIPVFLEKRDVLACAPTGSGKTLAFNLPILQHLKDLSQEKHKVGLRALILSPTRELAAQIYREMRKY-SIDEGTS 239 (593)
T ss_pred cccchhhhhhhcccceEEeccCCCcchhhhhhHHHHHHHHhhcccCccceEEEEecchHHHHHHHHHHHHhc-CCCCCCc
Confidence 45778999999999999999999999999888777664322 237889999999999999887543 21111
Q ss_pred -CEEEEEEe------eeecCCCCccEEEEchHHHHHHHhcCC---CCCCccEEEEeCCCcCCCCccHHHHHHHHHHh--h
Q 001722 397 -DKVGYAIR------FEDVTGPSTLIKYMTDGVLLRETLKDS---DLDKYRVIVMDEAHERSLSTDVLFGILKKVVA--R 464 (1020)
Q Consensus 397 -~~VGy~ir------~e~~~s~~t~I~~~T~g~LLr~ll~d~---~L~~~s~IIIDEaHERs~~tD~ll~lLk~il~--~ 464 (1020)
...+.... .........+|++.||-.+...+...+ .+.++.++|+||++ +-..-..+...+..++. .
T Consensus 240 ~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~~~~~~~~~idl~~V~~lV~dEaD-~lfe~~~f~~Qla~I~sac~ 318 (593)
T KOG0344|consen 240 LRAAQFSKPAYPSQKPAFLSDEKYDILISTPMRIVGLLGLGKLNIDLSKVEWLVVDEAD-LLFEPEFFVEQLADIYSACQ 318 (593)
T ss_pred hhhhhcccccchhhccchhHHHHHHHHhcCHHHHHHHhcCCCccchhheeeeEeechHH-hhhChhhHHHHHHHHHHHhc
Confidence 11111100 001112356788999999888877665 68999999999999 33333445555555544 3
Q ss_pred cCCceEEEEeccC--CHHHHHHHhCCCCeEeecCcccc----e--eeeecCCCchhHHHHHHHHHHHHhhcCCCCCEEEE
Q 001722 465 RRDFKLIVTSATL--NAQKFSDFFGSVPIFHIPGRTFP----V--NTLYSKTPCEDYVEAAVKQAMTIHITSPPGDILIF 536 (1020)
Q Consensus 465 r~~lklIlmSATl--d~~~f~~~f~~~pvi~i~gr~~p----V--~i~y~~~~~~dyl~~av~~~l~i~~~~~~g~ILVF 536 (1020)
.|++++=++|||+ .++.++......++..+-|..-. | +..|-...... -.++.+++ ...-+.++|||
T Consensus 319 s~~i~~a~FSat~~~~VEE~~~~i~~~~~~vivg~~~sa~~~V~QelvF~gse~~K--~lA~rq~v---~~g~~PP~lIf 393 (593)
T KOG0344|consen 319 SPDIRVALFSATISVYVEEWAELIKSDLKRVIVGLRNSANETVDQELVFCGSEKGK--LLALRQLV---ASGFKPPVLIF 393 (593)
T ss_pred CcchhhhhhhccccHHHHHHHHHhhccceeEEEecchhHhhhhhhhheeeecchhH--HHHHHHHH---hccCCCCeEEE
Confidence 4789999999999 46677766554444333332211 1 11111111111 11222322 22345689999
Q ss_pred cCCHHHHHHHHHHHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHHHhcCCCeEEEEecchhhccCCCCCeeEEE
Q 001722 537 MTGQDEIEAACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAETSLTVDGIFYVI 616 (1020)
Q Consensus 537 l~g~~eie~l~~~L~e~l~~l~~~~~~~~~~l~vl~lhs~L~~~eq~~I~~~f~~g~rkVIVATniaEtGItIp~V~~VI 616 (1020)
+-+.+.+.++...|. ..+++.|..+||..++.++..+++.|+.|++.|++||+++++|+|+.||+.||
T Consensus 394 VQs~eRak~L~~~L~------------~~~~i~v~vIh~e~~~~qrde~~~~FR~g~IwvLicTdll~RGiDf~gvn~VI 461 (593)
T KOG0344|consen 394 VQSKERAKQLFEELE------------IYDNINVDVIHGERSQKQRDETMERFRIGKIWVLICTDLLARGIDFKGVNLVI 461 (593)
T ss_pred EecHHHHHHHHHHhh------------hccCcceeeEecccchhHHHHHHHHHhccCeeEEEehhhhhccccccCcceEE
Confidence 999988888877664 13578899999999999999999999999999999999999999999999999
Q ss_pred EcCCccceeccCCCCcccccccccCHHHHHHHhcccCCCCC-CEEEEccChhhH
Q 001722 617 DTGYGKMKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTGP-GTCYRLYTESAY 669 (1020)
Q Consensus 617 D~G~~K~~~yd~~~g~~~L~~~piS~as~~QRaGRAGR~g~-G~cyrLyt~~~~ 669 (1020)
+ || .|.|..+|+||+||+||.|+ |++|.+||..+.
T Consensus 462 n--------yD----------~p~s~~syihrIGRtgRag~~g~Aitfytd~d~ 497 (593)
T KOG0344|consen 462 N--------YD----------FPQSDLSYIHRIGRTGRAGRSGKAITFYTDQDM 497 (593)
T ss_pred e--------cC----------CCchhHHHHHHhhccCCCCCCcceEEEeccccc
Confidence 8 88 89999999999999999996 999999998664
No 74
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.93 E-value=6.5e-25 Score=269.78 Aligned_cols=329 Identities=19% Similarity=0.230 Sum_probs=241.5
Q ss_pred HcCCCcHHHHHHHHHHHHhCCeEEEEecCCCchHHHHHHHHHHhcccCCCEEEEEcccHHHHHHHHHHHHHHhccccCCE
Q 001722 319 RQYLPIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELGDK 398 (1020)
Q Consensus 319 R~~LPi~~~q~eil~~i~~~q~vII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~lA~qva~rva~e~~~~lG~~ 398 (1020)
.....+.++|++.+.+|..+..|+|+||||||||.+...++...+. .+.++++|.|.++|.+|.+..+..++|.- .+.
T Consensus 115 ~~~F~LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~-~~qrviYTsPIKALsNQKyrdl~~~fgdv-~~~ 192 (1041)
T COG4581 115 EYPFELDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALR-DGQRVIYTSPIKALSNQKYRDLLAKFGDV-ADM 192 (1041)
T ss_pred hCCCCcCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHHH-cCCceEeccchhhhhhhHHHHHHHHhhhh-hhh
Confidence 3567789999999999999999999999999999987666665543 35679999999999999999999888744 334
Q ss_pred EEEEEeeeecCCCCccEEEEchHHHHHHHhcC-CCCCCccEEEEeCCC-----cCCCCccHHHHHHHHHHhhcCCceEEE
Q 001722 399 VGYAIRFEDVTGPSTLIKYMTDGVLLRETLKD-SDLDKYRVIVMDEAH-----ERSLSTDVLFGILKKVVARRRDFKLIV 472 (1020)
Q Consensus 399 VGy~ir~e~~~s~~t~I~~~T~g~LLr~ll~d-~~L~~~s~IIIDEaH-----ERs~~tD~ll~lLk~il~~r~~lklIl 472 (1020)
||. +.++-..++.+.+++||+++|.+++..+ ..+..+..||+||+| +|++-.+..+.+ ...++++|+
T Consensus 193 vGL-~TGDv~IN~~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvHyi~D~eRG~VWEE~Ii~------lP~~v~~v~ 265 (1041)
T COG4581 193 VGL-MTGDVSINPDAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHYIGDRERGVVWEEVIIL------LPDHVRFVF 265 (1041)
T ss_pred ccc-eecceeeCCCCceEEeeHHHHHHHhccCcccccccceEEEEeeeeccccccchhHHHHHHh------cCCCCcEEE
Confidence 554 3445566788999999999999888876 568999999999999 466554433222 244689999
Q ss_pred EeccC-CHHHHHHHhC-----CCCeEeecCcccceeeeecCC-C-------chhHHHHH---HHHHHH------------
Q 001722 473 TSATL-NAQKFSDFFG-----SVPIFHIPGRTFPVNTLYSKT-P-------CEDYVEAA---VKQAMT------------ 523 (1020)
Q Consensus 473 mSATl-d~~~f~~~f~-----~~pvi~i~gr~~pV~i~y~~~-~-------~~dyl~~a---v~~~l~------------ 523 (1020)
+|||+ |+..|+.|++ .+.++..+.|.-|...++... . ..++.... +...+.
T Consensus 266 LSATv~N~~EF~~Wi~~~~~~~~~vv~t~~RpvPL~~~~~~~~~l~~lvde~~~~~~~~~~~a~~~l~~~~~~~~~~~~~ 345 (1041)
T COG4581 266 LSATVPNAEEFAEWIQRVHSQPIHVVSTEHRPVPLEHFVYVGKGLFDLVDEKKKFNAENFPSANRSLSCFSEKVRETDDG 345 (1041)
T ss_pred EeCCCCCHHHHHHHHHhccCCCeEEEeecCCCCCeEEEEecCCceeeeecccccchhhcchhhhhhhhccchhccccCcc
Confidence 99999 9999999997 355677778888887776543 1 11111111 000000
Q ss_pred ---------------------------HhhcCCCCCEEEEcCCHHHHHHHHHHHH----------HH-HHHhhc------
Q 001722 524 ---------------------------IHITSPPGDILIFMTGQDEIEAACFALK----------ER-MEQLIS------ 559 (1020)
Q Consensus 524 ---------------------------i~~~~~~g~ILVFl~g~~eie~l~~~L~----------e~-l~~l~~------ 559 (1020)
.......-++++|+-++..|+..+..+. +. +..++.
T Consensus 346 ~~~~~a~~~~~~~~~~~~~~~~~~iv~~l~~~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~~e~~i~~ii~~~i~~L 425 (1041)
T COG4581 346 DVGRYARRTKALRGSAKGPAGRPEIVNKLDKDNLLPAIVFSFSRRGCEEAAQILSTLDLVLTEEKERAIREIIDHAIGDL 425 (1041)
T ss_pred ccccccccccccCCcccccccchHHHhhhhhhcCCceEEEEEchhhHHHHHHHhcccccccCCcHHHHHHHHHHHHHhhc
Confidence 0011123478999999999999887664 12 221111
Q ss_pred -cccCCCC-C---------eEEEEecCCCCHHHHHHHHHHhcCCCeEEEEecchhhccCCCCCeeEEEEcCCccceeccC
Q 001722 560 -STTREVP-E---------LLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAETSLTVDGIFYVIDTGYGKMKVYNP 628 (1020)
Q Consensus 560 -~~~~~~~-~---------l~vl~lhs~L~~~eq~~I~~~f~~g~rkVIVATniaEtGItIp~V~~VID~G~~K~~~yd~ 628 (1020)
......| . -.+..+|++|-+..+..|...|..|.+|||+||-+++.|+|.|.-++|+ +++ +.||
T Consensus 426 ~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNmPartvv~-~~l---~K~d- 500 (1041)
T COG4581 426 AEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINMPARTVVF-TSL---SKFD- 500 (1041)
T ss_pred ChhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhccceeEEeehhhhhhhcCCcccceee-eee---EEec-
Confidence 1111222 1 1255789999999999999999999999999999999999999666665 444 3344
Q ss_pred CCCcccccccccCHHHHHHHhcccCCCC---CCEEEEccCh
Q 001722 629 KMGMDALQVFPVSRAAADQRAGRAGRTG---PGTCYRLYTE 666 (1020)
Q Consensus 629 ~~g~~~L~~~piS~as~~QRaGRAGR~g---~G~cyrLyt~ 666 (1020)
.-...+++...|.|.+|||||.| -|.++.+.+.
T Consensus 501 -----G~~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~~ 536 (1041)
T COG4581 501 -----GNGHRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEPP 536 (1041)
T ss_pred -----CCceeecChhHHHHhhhhhccccccccceEEEecCC
Confidence 22346899999999999999999 4999888553
No 75
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=99.93 E-value=1e-25 Score=245.09 Aligned_cols=317 Identities=21% Similarity=0.258 Sum_probs=219.3
Q ss_pred HHHHHHcCCCcHHHHHHHHHHHHhCCeEEEEecCCCchHHHHHH----HHHHhcc------cCCCEEEEEcccHHHHHHH
Q 001722 314 TLAEQRQYLPIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQ----YLLEDGY------TTNGIVGCTQPRRVAAMSV 383 (1020)
Q Consensus 314 ~l~~~R~~LPi~~~q~eil~~i~~~q~vII~gpTGSGKTtqi~q----~Lle~~~------~~~~~Il~tqPrR~lA~qv 383 (1020)
..++.....-..+.|-+-|..++.++++|-+|-||||||+.+.+ ++++..+ ..+..-++++|.|+||.|.
T Consensus 183 ~~lk~KGI~~PTpIQvQGlPvvLsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~EGP~gLiicPSRELArQt 262 (610)
T KOG0341|consen 183 RGLKKKGIVHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARGEGPYGLIICPSRELARQT 262 (610)
T ss_pred HHHHhcCCCCCCceeecCcceEeecCceeeEEeecCCceEEEeHHHHHHHHHHHhcCccccCCCCeeEEEcCcHHHHHHH
Confidence 33444555556677888899999999999999999999987433 3333311 1233455667999999998
Q ss_pred HHHHHHHhccccCCEEEE-------EEeee------ecCCCCccEEEEchHHHHHHHhcC-CCCCCccEEEEeCCCcCCC
Q 001722 384 AKRVSEEMDTELGDKVGY-------AIRFE------DVTGPSTLIKYMTDGVLLRETLKD-SDLDKYRVIVMDEAHERSL 449 (1020)
Q Consensus 384 a~rva~e~~~~lG~~VGy-------~ir~e------~~~s~~t~I~~~T~g~LLr~ll~d-~~L~~~s~IIIDEaHERs~ 449 (1020)
..-+.+... .++ ..|| .+.+- +......+|+++|||.|...+... -.|.-+.++.+|||+ |.+
T Consensus 263 ~~iie~~~~-~L~-e~g~P~lRs~LciGG~~v~eql~~v~~GvHivVATPGRL~DmL~KK~~sLd~CRyL~lDEAD-Rmi 339 (610)
T KOG0341|consen 263 HDIIEQYVA-ALQ-EAGYPELRSLLCIGGVPVREQLDVVRRGVHIVVATPGRLMDMLAKKIMSLDACRYLTLDEAD-RMI 339 (610)
T ss_pred HHHHHHHHH-HHH-hcCChhhhhhhhhcCccHHHHHHHHhcCeeEEEcCcchHHHHHHHhhccHHHHHHhhhhhHH-HHh
Confidence 876643322 211 1122 11111 123457899999999998887543 347778899999999 777
Q ss_pred CccHHHHHHHHHHh-hcCCceEEEEeccCCHHHHHHHhCC---CCeEeecCcccceeeeecCCCchhHHHHHHHHHHHH-
Q 001722 450 STDVLFGILKKVVA-RRRDFKLIVTSATLNAQKFSDFFGS---VPIFHIPGRTFPVNTLYSKTPCEDYVEAAVKQAMTI- 524 (1020)
Q Consensus 450 ~tD~ll~lLk~il~-~r~~lklIlmSATld~~~f~~~f~~---~pvi~i~gr~~pV~i~y~~~~~~dyl~~av~~~l~i- 524 (1020)
++.|--.+ +.+.. .....+.+++||||. .+++.|-.. -|+...-||.-.-..... ..-.|+....+.+..+
T Consensus 340 DmGFEddi-r~iF~~FK~QRQTLLFSATMP-~KIQ~FAkSALVKPvtvNVGRAGAAsldVi--QevEyVkqEaKiVylLe 415 (610)
T KOG0341|consen 340 DMGFEDDI-RTIFSFFKGQRQTLLFSATMP-KKIQNFAKSALVKPVTVNVGRAGAASLDVI--QEVEYVKQEAKIVYLLE 415 (610)
T ss_pred hccchhhH-HHHHHHHhhhhheeeeecccc-HHHHHHHHhhcccceEEecccccccchhHH--HHHHHHHhhhhhhhHHH
Confidence 76543222 22221 123458899999994 334433332 344333344321111100 1224554433333222
Q ss_pred hhcCCCCCEEEEcCCHHHHHHHHHHHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHHHhcCCCeEEEEecchhh
Q 001722 525 HITSPPGDILIFMTGQDEIEAACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAE 604 (1020)
Q Consensus 525 ~~~~~~g~ILVFl~g~~eie~l~~~L~e~l~~l~~~~~~~~~~l~vl~lhs~L~~~eq~~I~~~f~~g~rkVIVATniaE 604 (1020)
++.....++|||+..+.+++.+.+.|-- .++.++.+||+-.+++|...++.|+.|+..|+|||++|.
T Consensus 416 CLQKT~PpVLIFaEkK~DVD~IhEYLLl-------------KGVEavaIHGGKDQedR~~ai~afr~gkKDVLVATDVAS 482 (610)
T KOG0341|consen 416 CLQKTSPPVLIFAEKKADVDDIHEYLLL-------------KGVEAVAIHGGKDQEDRHYAIEAFRAGKKDVLVATDVAS 482 (610)
T ss_pred HhccCCCceEEEeccccChHHHHHHHHH-------------ccceeEEeecCcchhHHHHHHHHHhcCCCceEEEecchh
Confidence 2344467899999999999999887732 378899999999999999999999999999999999999
Q ss_pred ccCCCCCeeEEEEcCCccceeccCCCCcccccccccCHHHHHHHhcccCCCCC-CEEEEccChhh
Q 001722 605 TSLTVDGIFYVIDTGYGKMKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTGP-GTCYRLYTESA 668 (1020)
Q Consensus 605 tGItIp~V~~VID~G~~K~~~yd~~~g~~~L~~~piS~as~~QRaGRAGR~g~-G~cyrLyt~~~ 668 (1020)
.|+|+|+|.+||| || .|-...+|.||+||+||.|. |.+-.+..+..
T Consensus 483 KGLDFp~iqHVIN--------yD----------MP~eIENYVHRIGRTGRsg~~GiATTfINK~~ 529 (610)
T KOG0341|consen 483 KGLDFPDIQHVIN--------YD----------MPEEIENYVHRIGRTGRSGKTGIATTFINKNQ 529 (610)
T ss_pred ccCCCccchhhcc--------CC----------ChHHHHHHHHHhcccCCCCCcceeeeeecccc
Confidence 9999999999999 77 79999999999999999995 99888877654
No 76
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.93 E-value=4.9e-24 Score=257.23 Aligned_cols=417 Identities=16% Similarity=0.190 Sum_probs=271.9
Q ss_pred cHHHHHHHHHHHH-hCCeEEEEecCCCchHHHHHHHHHHhcccC----------CCEEEEEcccHHHHHHHHHHHHHHhc
Q 001722 324 IFSVRDELLQVIR-ENQVVVVVGETGSGKTTQLTQYLLEDGYTT----------NGIVGCTQPRRVAAMSVAKRVSEEMD 392 (1020)
Q Consensus 324 i~~~q~eil~~i~-~~q~vII~gpTGSGKTtqi~q~Lle~~~~~----------~~~Il~tqPrR~lA~qva~rva~e~~ 392 (1020)
+...|..+..+.. ...++++|||||+|||-.+..-+++..-.. ..+|+++.|.++|+..+...+++.+
T Consensus 310 LNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPmKaLvqE~VgsfSkRl- 388 (1674)
T KOG0951|consen 310 LNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPMKALVQEMVGSFSKRL- 388 (1674)
T ss_pred hhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeHHHHHHHHHHHHHhhc-
Confidence 4556666666554 457999999999999998877777653221 2389999999999999988876654
Q ss_pred cccCCEEEEEEeeee---cCCCCccEEEEchHH---HHHHHhcCCCCCCccEEEEeCCC----cCCCCccHHHH-HHHHH
Q 001722 393 TELGDKVGYAIRFED---VTGPSTLIKYMTDGV---LLRETLKDSDLDKYRVIVMDEAH----ERSLSTDVLFG-ILKKV 461 (1020)
Q Consensus 393 ~~lG~~VGy~ir~e~---~~s~~t~I~~~T~g~---LLr~ll~d~~L~~~s~IIIDEaH----ERs~~tD~ll~-lLk~i 461 (1020)
..+|..|+-..+-.. ..-..|.|+++||+- +.|.--.+...+-|+++|+||+| .|+.-..-+.. .+++.
T Consensus 389 a~~GI~V~ElTgD~~l~~~qieeTqVIV~TPEK~DiITRk~gdraY~qlvrLlIIDEIHLLhDdRGpvLESIVaRt~r~s 468 (1674)
T KOG0951|consen 389 APLGITVLELTGDSQLGKEQIEETQVIVTTPEKWDIITRKSGDRAYEQLVRLLIIDEIHLLHDDRGPVLESIVARTFRRS 468 (1674)
T ss_pred cccCcEEEEecccccchhhhhhcceeEEeccchhhhhhcccCchhHHHHHHHHhhhhhhhcccccchHHHHHHHHHHHHh
Confidence 345666653222211 112579999999974 34433333345678999999998 35544332222 23333
Q ss_pred HhhcCCceEEEEeccC-CHHHHHHHhCCCC--eEee--cCcccceeeeecCCCchhHH------H-HHHHHHHHHhhcCC
Q 001722 462 VARRRDFKLIVTSATL-NAQKFSDFFGSVP--IFHI--PGRTFPVNTLYSKTPCEDYV------E-AAVKQAMTIHITSP 529 (1020)
Q Consensus 462 l~~r~~lklIlmSATl-d~~~f~~~f~~~p--vi~i--~gr~~pV~i~y~~~~~~dyl------~-~av~~~l~i~~~~~ 529 (1020)
-......+++++|||+ |.+..+.|+.-.+ +|.. .-|..|++..|......+-+ . .....++ .|. .
T Consensus 469 es~~e~~RlVGLSATLPNy~DV~~Fl~v~~~glf~fd~syRpvPL~qq~Igi~ek~~~~~~qamNe~~yeKVm-~~a--g 545 (1674)
T KOG0951|consen 469 ESTEEGSRLVGLSATLPNYEDVASFLRVDPEGLFYFDSSYRPVPLKQQYIGITEKKPLKRFQAMNEACYEKVL-EHA--G 545 (1674)
T ss_pred hhcccCceeeeecccCCchhhhHHHhccCcccccccCcccCcCCccceEeccccCCchHHHHHHHHHHHHHHH-HhC--C
Confidence 3344579999999999 8888888776433 2322 45666776666543322211 1 1222222 222 3
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHHHHHH------h------------------hccccCCCCCeEEEEecCCCCHHHHHHH
Q 001722 530 PGDILIFMTGQDEIEAACFALKERMEQ------L------------------ISSTTREVPELLILPIYSQLPADLQAKI 585 (1020)
Q Consensus 530 ~g~ILVFl~g~~eie~l~~~L~e~l~~------l------------------~~~~~~~~~~l~vl~lhs~L~~~eq~~I 585 (1020)
.++||||+.++++.-+++..++...-. + .+...++..++.+..+|+||+..+|..+
T Consensus 546 k~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdLLpygfaIHhAGl~R~dR~~~ 625 (1674)
T KOG0951|consen 546 KNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDLLPYGFAIHHAGLNRKDRELV 625 (1674)
T ss_pred CCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHHhhccceeeccCCCcchHHHH
Confidence 489999999999999999988742211 1 1111234456778999999999999999
Q ss_pred HHHhcCCCeEEEEecchhhccCCCCCeeEEEEcCCccceeccCCCCcccccccccCHHHHHHHhcccCCCC-----CCEE
Q 001722 586 FEKAKEGTRKCIVATNIAETSLTVDGIFYVIDTGYGKMKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTG-----PGTC 660 (1020)
Q Consensus 586 ~~~f~~g~rkVIVATniaEtGItIp~V~~VID~G~~K~~~yd~~~g~~~L~~~piS~as~~QRaGRAGR~g-----~G~c 660 (1020)
++.|..|.++|+|+|.++++||++|+-+++| ....+|||..|.- .++|+-...||.|||||.+ .|+.
T Consensus 626 EdLf~~g~iqvlvstatlawgvnlpahtVii----kgtqvy~pekg~w----~elsp~dv~qmlgragrp~~D~~gegii 697 (1674)
T KOG0951|consen 626 EDLFADGHIQVLVSTATLAWGVNLPAHTVII----KGTQVYDPEKGRW----TELSPLDVMQMLGRAGRPQYDTCGEGII 697 (1674)
T ss_pred HHHHhcCceeEEEeehhhhhhcCCCcceEEe----cCccccCcccCcc----ccCCHHHHHHHHhhcCCCccCcCCceee
Confidence 9999999999999999999999999998888 4578999998844 6899999999999999987 3666
Q ss_pred EEccChhhHhhccCCC--CcchhcccchhHHHHHHhhcccCcccC----------------CC--------CCCCCC---
Q 001722 661 YRLYTESAYLNEMLPS--PVPEIQRTNLGNVVLLLKSLKIDNLLD----------------FD--------FMDPPP--- 711 (1020)
Q Consensus 661 yrLyt~~~~~~~m~~~--~~PEI~r~~L~~vvL~lk~lgi~~~~~----------------f~--------~~dpP~--- 711 (1020)
..=+++-.|.-.+... ++++-.-..|..-+=.=+.+|+..+.+ .+ ..|++-
T Consensus 698 it~~se~qyyls~mn~qLpiesq~~~rl~d~lnaeiv~Gv~~~~d~~~wl~yTylyvRm~~~p~ly~~~~~~~d~~le~~ 777 (1674)
T KOG0951|consen 698 ITDHSELQYYLSLMNQQLPIESQFVSRLADCLNAEIVLGVRSARDAVDWLGYTYLYVRMVRNPTLYGVSPEASDRLLEQR 777 (1674)
T ss_pred ccCchHhhhhHHhhhhcCCChHHHHHHhhhhhhhhhhcchhhHHHHHhhhcceeeEEeeccCchhccCCcccchHHHHHH
Confidence 6555555543222222 333333333333222222233322110 00 011111
Q ss_pred -hhhHHHHHHHHHHhcCccC---CC--CccHHHHHhhcCCCChHHHH
Q 001722 712 -QENILNSMYQLWVLGALNN---VG--ALTDLGWKMVEFPLDPPLAK 752 (1020)
Q Consensus 712 -~~~i~~al~~L~~lgaLd~---~g--~LT~lG~~ma~lPldp~lak 752 (1020)
.+.+..|.-.|...|.|-- .| ..|.+|+..+.+-+.-.-..
T Consensus 778 r~~lvhsa~~ll~~~~li~yd~~s~~~~~telg~ias~yyi~~~s~~ 824 (1674)
T KOG0951|consen 778 RADLVHSAATLLDKAGLIKYDRKSGAIQATELGRIASSYYITHGSMA 824 (1674)
T ss_pred HhhhHHHHHhhHhhcCccccccccCcccchhhccccceeeeecchHH
Confidence 1456678888888888742 23 57899999998887544433
No 77
>PRK09401 reverse gyrase; Reviewed
Probab=99.92 E-value=8.8e-24 Score=270.07 Aligned_cols=299 Identities=17% Similarity=0.127 Sum_probs=192.3
Q ss_pred HHHHHcCCCcHHHHHHHHHHHHhCCeEEEEecCCCchHHHHHHHHHHhcccCCCEEEEEcccHHHHHHHHHHHHHHhccc
Q 001722 315 LAEQRQYLPIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTE 394 (1020)
Q Consensus 315 l~~~R~~LPi~~~q~eil~~i~~~q~vII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~lA~qva~rva~e~~~~ 394 (1020)
+.+..-....+++|...+..+..+++++++||||||||+.+...+ ......+.+++++.|+|+||.|++.++.. ++..
T Consensus 72 ~f~~~~G~~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~f~l~~~-~~l~~~g~~alIL~PTreLa~Qi~~~l~~-l~~~ 149 (1176)
T PRK09401 72 FFKKKTGSKPWSLQRTWAKRLLLGESFAIIAPTGVGKTTFGLVMS-LYLAKKGKKSYIIFPTRLLVEQVVEKLEK-FGEK 149 (1176)
T ss_pred HHHHhcCCCCcHHHHHHHHHHHCCCcEEEEcCCCCCHHHHHHHHH-HHHHhcCCeEEEEeccHHHHHHHHHHHHH-Hhhh
Confidence 334444457899999999999999999999999999997543322 22223467899999999999999999954 4444
Q ss_pred cCCEEEEEEeeee------------cCCCCccEEEEchHHHHHHHhcCCCCCCccEEEEeCCCcC---CCCccHHHH---
Q 001722 395 LGDKVGYAIRFED------------VTGPSTLIKYMTDGVLLRETLKDSDLDKYRVIVMDEAHER---SLSTDVLFG--- 456 (1020)
Q Consensus 395 lG~~VGy~ir~e~------------~~s~~t~I~~~T~g~LLr~ll~d~~L~~~s~IIIDEaHER---s~~tD~ll~--- 456 (1020)
.+..+........ ......+|+++|+|.|.+.+. .-.+.++++|||||||.- +-+.|-++.
T Consensus 150 ~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~-~l~~~~~~~lVvDEaD~~L~~~k~id~~l~~lG 228 (1176)
T PRK09401 150 VGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD-ELPKKKFDFVFVDDVDAVLKSSKNIDKLLYLLG 228 (1176)
T ss_pred cCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH-hccccccCEEEEEChHHhhhcccchhhHHHhCC
Confidence 4444332221111 012357899999999998764 233456999999999941 111121111
Q ss_pred ----HHHHHHhh-------------------------cCCceEEEEeccCCHHHHH-HHhCCCCeEeecCcc---cceee
Q 001722 457 ----ILKKVVAR-------------------------RRDFKLIVTSATLNAQKFS-DFFGSVPIFHIPGRT---FPVNT 503 (1020)
Q Consensus 457 ----lLk~il~~-------------------------r~~lklIlmSATld~~~f~-~~f~~~pvi~i~gr~---~pV~i 503 (1020)
.+..++.. ..+.++|++|||++..... .+|.+.-.+.+.... ..+..
T Consensus 229 F~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~~l~~~ll~~~v~~~~~~~rnI~~ 308 (1176)
T PRK09401 229 FSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRVKLFRELLGFEVGSPVFYLRNIVD 308 (1176)
T ss_pred CCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHHHHhhccceEEecCcccccCCceE
Confidence 11111110 1156899999999754222 233322123332222 12444
Q ss_pred eecCCCchhHHHHHHHHHHHHhhcCCCCCEEEEcCCHHH---HHHHHHHHHHHHHHhhccccCCCCCeEEEEecCCCCHH
Q 001722 504 LYSKTPCEDYVEAAVKQAMTIHITSPPGDILIFMTGQDE---IEAACFALKERMEQLISSTTREVPELLILPIYSQLPAD 580 (1020)
Q Consensus 504 ~y~~~~~~dyl~~av~~~l~i~~~~~~g~ILVFl~g~~e---ie~l~~~L~e~l~~l~~~~~~~~~~l~vl~lhs~L~~~ 580 (1020)
.|...+ +... .+...+.. .+..+||||++... ++.+++.|.+ .++.+..+||+|
T Consensus 309 ~yi~~~--~k~~-~L~~ll~~----l~~~~LIFv~t~~~~~~ae~l~~~L~~-------------~gi~v~~~hg~l--- 365 (1176)
T PRK09401 309 SYIVDE--DSVE-KLVELVKR----LGDGGLIFVPSDKGKEYAEELAEYLED-------------LGINAELAISGF--- 365 (1176)
T ss_pred EEEEcc--cHHH-HHHHHHHh----cCCCEEEEEecccChHHHHHHHHHHHH-------------CCCcEEEEeCcH---
Confidence 444322 2222 22222221 23579999998766 8888777764 268899999999
Q ss_pred HHHHHHHHhcCCCeEEEEe----cchhhccCCCCC-eeEEEEcCCccceeccCCCCcccccccccCHHHHHHHhcccC
Q 001722 581 LQAKIFEKAKEGTRKCIVA----TNIAETSLTVDG-IFYVIDTGYGKMKVYNPKMGMDALQVFPVSRAAADQRAGRAG 653 (1020)
Q Consensus 581 eq~~I~~~f~~g~rkVIVA----TniaEtGItIp~-V~~VID~G~~K~~~yd~~~g~~~L~~~piS~as~~QRaGRAG 653 (1020)
.+.++.|.+|..+|||| |++|++|||+|+ |+|||+.|..+.++ . ---...+.+|.||+-
T Consensus 366 --~~~l~~F~~G~~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP~~~~-~-----------~~~~~~~~~~~~r~~ 429 (1176)
T PRK09401 366 --ERKFEKFEEGEVDVLVGVASYYGVLVRGIDLPERIRYAIFYGVPKFKF-S-----------LEEELAPPFLLLRLL 429 (1176)
T ss_pred --HHHHHHHHCCCCCEEEEecCCCCceeecCCCCcceeEEEEeCCCCEEE-e-----------ccccccCHHHHHHHH
Confidence 23459999999999999 699999999999 89999988755432 1 012345678888874
No 78
>KOG4284 consensus DEAD box protein [Transcription]
Probab=99.92 E-value=2.5e-24 Score=246.06 Aligned_cols=313 Identities=16% Similarity=0.201 Sum_probs=231.3
Q ss_pred cHHHHHHHHHHHHhCCeEEEEecCCCchHHHHHHHHHHhcccC--CCEEEEEcccHHHHHHHHHHHHHHhccccCCEEEE
Q 001722 324 IFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTT--NGIVGCTQPRRVAAMSVAKRVSEEMDTELGDKVGY 401 (1020)
Q Consensus 324 i~~~q~eil~~i~~~q~vII~gpTGSGKTtqi~q~Lle~~~~~--~~~Il~tqPrR~lA~qva~rva~e~~~~lG~~VGy 401 (1020)
-.++|..+|.++..+-++||.+..|+|||+++....++..-.. ...++++.|||++|+|+-..|...-..--|..+..
T Consensus 48 ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~~~~~~q~~Iv~PTREiaVQI~~tv~~v~~sf~g~~csv 127 (980)
T KOG4284|consen 48 PTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDSRSSHIQKVIVTPTREIAVQIKETVRKVAPSFTGARCSV 127 (980)
T ss_pred CCchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCcccCcceeEEEecchhhhhHHHHHHHHhcccccCcceEE
Confidence 3578999999999999999999999999998766666654322 34678889999999999988855433223444433
Q ss_pred EEeeee-----cCCCCccEEEEchHHHHHHHhcC-CCCCCccEEEEeCCCcCCCCccHHHHHHHHHHhhcC-CceEEEEe
Q 001722 402 AIRFED-----VTGPSTLIKYMTDGVLLRETLKD-SDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRR-DFKLIVTS 474 (1020)
Q Consensus 402 ~ir~e~-----~~s~~t~I~~~T~g~LLr~ll~d-~~L~~~s~IIIDEaHERs~~tD~ll~lLk~il~~r~-~lklIlmS 474 (1020)
-|.+.. ..-..++|++.|||.++...-.+ -..+++.++|||||+ .-+.+..+-.-+..++..-| .-+++++|
T Consensus 128 fIGGT~~~~d~~rlk~~rIvIGtPGRi~qL~el~~~n~s~vrlfVLDEAD-kL~~t~sfq~~In~ii~slP~~rQv~a~S 206 (980)
T KOG4284|consen 128 FIGGTAHKLDLIRLKQTRIVIGTPGRIAQLVELGAMNMSHVRLFVLDEAD-KLMDTESFQDDINIIINSLPQIRQVAAFS 206 (980)
T ss_pred EecCchhhhhhhhhhhceEEecCchHHHHHHHhcCCCccceeEEEeccHH-hhhchhhHHHHHHHHHHhcchhheeeEEe
Confidence 333332 22357899999999998876544 358899999999999 45555555555555554433 46899999
Q ss_pred ccCC---HHHHHHHhCCCCeEeecCcc---cceeeeecCCCch----hHHHHHHHHHHHHhhcCCCCCEEEEcCCHHHHH
Q 001722 475 ATLN---AQKFSDFFGSVPIFHIPGRT---FPVNTLYSKTPCE----DYVEAAVKQAMTIHITSPPGDILIFMTGQDEIE 544 (1020)
Q Consensus 475 ATld---~~~f~~~f~~~pvi~i~gr~---~pV~i~y~~~~~~----dyl~~av~~~l~i~~~~~~g~ILVFl~g~~eie 544 (1020)
||-+ .+.+++|+.++-++....+. +-+..+|...+.. .-+...+..+-.+...-+-...||||+....++
T Consensus 207 ATYp~nLdn~Lsk~mrdp~lVr~n~~d~~L~GikQyv~~~~s~nnsveemrlklq~L~~vf~~ipy~QAlVF~~~~sra~ 286 (980)
T KOG4284|consen 207 ATYPRNLDNLLSKFMRDPALVRFNADDVQLFGIKQYVVAKCSPNNSVEEMRLKLQKLTHVFKSIPYVQALVFCDQISRAE 286 (980)
T ss_pred ccCchhHHHHHHHHhcccceeecccCCceeechhheeeeccCCcchHHHHHHHHHHHHHHHhhCchHHHHhhhhhhhhhh
Confidence 9994 45778888766565554332 2233333222111 112222223333333445678899999999999
Q ss_pred HHHHHHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHHHhcCCCeEEEEecchhhccCCCCCeeEEEEcCCccce
Q 001722 545 AACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAETSLTVDGIFYVIDTGYGKMK 624 (1020)
Q Consensus 545 ~l~~~L~e~l~~l~~~~~~~~~~l~vl~lhs~L~~~eq~~I~~~f~~g~rkVIVATniaEtGItIp~V~~VID~G~~K~~ 624 (1020)
.++..|.. .++.+-.+.|.|.+.+|..+++..+.-..+|||+|+..++|||-|.|+.|||
T Consensus 287 ~~a~~L~s-------------sG~d~~~ISgaM~Q~~Rl~a~~~lr~f~~rILVsTDLtaRGIDa~~vNLVVN------- 346 (980)
T KOG4284|consen 287 PIATHLKS-------------SGLDVTFISGAMSQKDRLLAVDQLRAFRVRILVSTDLTARGIDADNVNLVVN------- 346 (980)
T ss_pred HHHHHhhc-------------cCCCeEEeccccchhHHHHHHHHhhhceEEEEEecchhhccCCccccceEEe-------
Confidence 88888753 4788999999999999999999999999999999999999999999999998
Q ss_pred eccCCCCcccccccccCHHHHHHHhcccCCCCC-CEEEEccChhh
Q 001722 625 VYNPKMGMDALQVFPVSRAAADQRAGRAGRTGP-GTCYRLYTESA 668 (1020)
Q Consensus 625 ~yd~~~g~~~L~~~piS~as~~QRaGRAGR~g~-G~cyrLyt~~~ 668 (1020)
.| .|..-..|.||+|||||.|. |.++.++..+.
T Consensus 347 -iD----------~p~d~eTY~HRIGRAgRFG~~G~aVT~~~~~~ 380 (980)
T KOG4284|consen 347 -ID----------APADEETYFHRIGRAGRFGAHGAAVTLLEDER 380 (980)
T ss_pred -cC----------CCcchHHHHHHhhhcccccccceeEEEeccch
Confidence 33 69999999999999999996 99998887543
No 79
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.91 E-value=1.3e-22 Score=245.90 Aligned_cols=308 Identities=20% Similarity=0.217 Sum_probs=203.6
Q ss_pred HcCCCcHHHHHHHHHHHHhCCeEEEEecCCCchHHHHHHHHHHhcccCCCEEEEEcccHHHHHHHHHHHHHHhccccCCE
Q 001722 319 RQYLPIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELGDK 398 (1020)
Q Consensus 319 R~~LPi~~~q~eil~~i~~~q~vII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~lA~qva~rva~e~~~~lG~~ 398 (1020)
++.|-+++++.+++..+.-++..|+.++||+|||+++..+++..... +..++|+.|++.||.+.+..+... ...+|..
T Consensus 64 ~R~lglrpydVQlig~l~l~~G~Iaem~TGeGKTLta~Lpa~l~aL~-g~~V~VVTpn~yLA~Rdae~m~~l-~~~LGLs 141 (762)
T TIGR03714 64 KRVLGMFPYDVQVLGAIVLHQGNIAEMKTGEGKTLTATMPLYLNALT-GKGAMLVTTNDYLAKRDAEEMGPV-YEWLGLT 141 (762)
T ss_pred HhhcCCCccHHHHHHHHHhcCCceeEecCCcchHHHHHHHHHHHhhc-CCceEEeCCCHHHHHHHHHHHHHH-HhhcCCc
Confidence 66788888999999988888888999999999999988777665554 456889999999999999887443 3446777
Q ss_pred EEEEEeee---e------cCCCCccEEEEchHHHHH-HH---h-c---CCCCCCccEEEEeCCCc------CCC------
Q 001722 399 VGYAIRFE---D------VTGPSTLIKYMTDGVLLR-ET---L-K---DSDLDKYRVIVMDEAHE------RSL------ 449 (1020)
Q Consensus 399 VGy~ir~e---~------~~s~~t~I~~~T~g~LLr-~l---l-~---d~~L~~~s~IIIDEaHE------Rs~------ 449 (1020)
||..+... . .....+.|+|+|++.|.. .+ + . +..+.++.++||||||. |+.
T Consensus 142 v~~~~~~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILiDeartpliisg~ 221 (762)
T TIGR03714 142 VSLGVVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLDSAQTPLVISGA 221 (762)
T ss_pred EEEEECCCCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhhccCcCCeeeeCC
Confidence 77544320 0 111367999999999832 22 1 1 23477899999999993 111
Q ss_pred ---CccHHHHHHHHHHhh-cC--C--------------------------------------------------------
Q 001722 450 ---STDVLFGILKKVVAR-RR--D-------------------------------------------------------- 467 (1020)
Q Consensus 450 ---~tD~ll~lLk~il~~-r~--~-------------------------------------------------------- 467 (1020)
.+ .+......++.. .+ +
T Consensus 222 ~~~~~-~~y~~~~~~v~~l~~~~dy~~d~~~~~v~lt~~G~~~~e~~~~~~~l~~~~~~~~~~~i~~al~A~~~~~~d~d 300 (762)
T TIGR03714 222 PRVQS-NLYHIADTFVRTLKEDVDYIFKKDKKEVWLTDKGIEKAEQYFKIDNLYSEEYFELVRHINLALRAHYLFKRNKD 300 (762)
T ss_pred Cccch-HHHHHHHHHHHhcCCCCCeEEEcCCCeeeecHhHHHHHHHHcCCCccCChhhHHHHHHHHHHHHHHHHHhcCCc
Confidence 01 112222122111 00 0
Q ss_pred -----------------------------------------------------------ceEEEEeccC--CHHHHHHHh
Q 001722 468 -----------------------------------------------------------FKLIVTSATL--NAQKFSDFF 486 (1020)
Q Consensus 468 -----------------------------------------------------------lklIlmSATl--d~~~f~~~f 486 (1020)
.++.+||.|. ..+.|.+.+
T Consensus 301 YiV~~~~v~ivD~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~~~~~Ef~~iY 380 (762)
T TIGR03714 301 YVVTNGEVVLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASITYQNLFKMFNKLSGMTGTGKVAEKEFIETY 380 (762)
T ss_pred eEEECCEEEEEECCCCcCCCCCCcchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCChhHHHHHHHHh
Confidence 1333333333 122233222
Q ss_pred CCCCeEeecCccccee------eeecCCCchhHHHHHHHHHHHHhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHHHhhcc
Q 001722 487 GSVPIFHIPGRTFPVN------TLYSKTPCEDYVEAAVKQAMTIHITSPPGDILIFMTGQDEIEAACFALKERMEQLISS 560 (1020)
Q Consensus 487 ~~~pvi~i~gr~~pV~------i~y~~~~~~dyl~~av~~~l~i~~~~~~g~ILVFl~g~~eie~l~~~L~e~l~~l~~~ 560 (1020)
+ .+++.||... |+. ..|. .......+.+..+...| ..+.++||||++.+.++.++..|.+.
T Consensus 381 ~-l~v~~IPt~k-p~~r~d~~d~i~~--~~~~K~~ai~~~i~~~~--~~~~pvLIft~s~~~se~ls~~L~~~------- 447 (762)
T TIGR03714 381 S-LSVVKIPTNK-PIIRIDYPDKIYA--TLPEKLMATLEDVKEYH--ETGQPVLLITGSVEMSEIYSELLLRE------- 447 (762)
T ss_pred C-CCEEEcCCCC-CeeeeeCCCeEEE--CHHHHHHHHHHHHHHHh--hCCCCEEEEECcHHHHHHHHHHHHHC-------
Confidence 1 3333333221 110 0110 11122333344444443 34678999999999999988888642
Q ss_pred ccCCCCCeEEEEecCCCCHHHHHHHHHHhcCCCeEEEEecchhhccCCCC---------CeeEEEEcCCccceeccCCCC
Q 001722 561 TTREVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAETSLTVD---------GIFYVIDTGYGKMKVYNPKMG 631 (1020)
Q Consensus 561 ~~~~~~~l~vl~lhs~L~~~eq~~I~~~f~~g~rkVIVATniaEtGItIp---------~V~~VID~G~~K~~~yd~~~g 631 (1020)
++.+..+||.+...++..+...+..| .|+||||+|++|+||+ |+.+||+ |+
T Consensus 448 ------gi~~~~L~a~~~~~E~~ii~~ag~~g--~VlIATdmAgRGtDI~l~~~v~~~GGL~vIit--------~~---- 507 (762)
T TIGR03714 448 ------GIPHNLLNAQNAAKEAQIIAEAGQKG--AVTVATSMAGRGTDIKLGKGVAELGGLAVIGT--------ER---- 507 (762)
T ss_pred ------CCCEEEecCCChHHHHHHHHHcCCCC--eEEEEccccccccCCCCCccccccCCeEEEEe--------cC----
Confidence 66778899999999988888777666 7999999999999999 9999997 55
Q ss_pred cccccccccCHHHHHHHhcccCCCC-CCEEEEccChhhH
Q 001722 632 MDALQVFPVSRAAADQRAGRAGRTG-PGTCYRLYTESAY 669 (1020)
Q Consensus 632 ~~~L~~~piS~as~~QRaGRAGR~g-~G~cyrLyt~~~~ 669 (1020)
.|..... .||+|||||.| ||.|+.+++.++.
T Consensus 508 ------~ps~rid-~qr~GRtGRqG~~G~s~~~is~eD~ 539 (762)
T TIGR03714 508 ------MENSRVD-LQLRGRSGRQGDPGSSQFFVSLEDD 539 (762)
T ss_pred ------CCCcHHH-HHhhhcccCCCCceeEEEEEccchh
Confidence 3444444 99999999999 7999999987653
No 80
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.91 E-value=7.2e-24 Score=233.32 Aligned_cols=303 Identities=20% Similarity=0.248 Sum_probs=204.6
Q ss_pred HHHHHHHH-HHhCCeEEEEecCCCchHHHHHHHHHHhcccCCCEEEEEcccHHHHHHHHHHHHHHhccc---cCCEEEEE
Q 001722 327 VRDELLQV-IRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTE---LGDKVGYA 402 (1020)
Q Consensus 327 ~q~eil~~-i~~~q~vII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~lA~qva~rva~e~~~~---lG~~VGy~ 402 (1020)
.|+.++.+ +..+++|.|++|||+|||+++.++.+-+ ++..+|+.|..+|.......+.. +..+ +.....-.
T Consensus 24 LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~----~gITIV~SPLiALIkDQiDHL~~-LKVp~~SLNSKlSt~ 98 (641)
T KOG0352|consen 24 LQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVH----GGITIVISPLIALIKDQIDHLKR-LKVPCESLNSKLSTV 98 (641)
T ss_pred HHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHh----CCeEEEehHHHHHHHHHHHHHHh-cCCchhHhcchhhHH
Confidence 35555554 5678899999999999999876655433 45788999999998887766632 2211 11111100
Q ss_pred Eee-----eecCCCCccEEEEchHHHHHHHhcC-----CCCCCccEEEEeCCCcCCC-----CccHH-HHHHHHHHhhcC
Q 001722 403 IRF-----EDVTGPSTLIKYMTDGVLLRETLKD-----SDLDKYRVIVMDEAHERSL-----STDVL-FGILKKVVARRR 466 (1020)
Q Consensus 403 ir~-----e~~~s~~t~I~~~T~g~LLr~ll~d-----~~L~~~s~IIIDEaHERs~-----~tD~l-l~lLk~il~~r~ 466 (1020)
-|- -....+.++++|.||++.......+ ..-..+++|+|||||+-+. ..|.| |+-|+ ...+
T Consensus 99 ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L~~r~~L~Y~vVDEAHCVSQWGHDFRPDYL~LG~LR---S~~~ 175 (641)
T KOG0352|consen 99 ERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGLANRDVLRYIVVDEAHCVSQWGHDFRPDYLTLGSLR---SVCP 175 (641)
T ss_pred HHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHHhhhceeeeEEechhhhHhhhccccCcchhhhhhHH---hhCC
Confidence 000 0123468899999999754322111 1134568999999997443 33432 34443 4578
Q ss_pred CceEEEEeccCCHHHHHHHhC----CCCeEeecCcccceeeeecCCCchhHHHHHHHHH-------HHHh------hcCC
Q 001722 467 DFKLIVTSATLNAQKFSDFFG----SVPIFHIPGRTFPVNTLYSKTPCEDYVEAAVKQA-------MTIH------ITSP 529 (1020)
Q Consensus 467 ~lklIlmSATld~~~f~~~f~----~~pvi~i~gr~~pV~i~y~~~~~~dyl~~av~~~-------l~i~------~~~~ 529 (1020)
++.-|.++||.+.+.-.+.|. ..||-......|.-..+|.. ...+.+...+..+ +-.| ....
T Consensus 176 ~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP~FR~NLFYD~-~~K~~I~D~~~~LaDF~~~~LG~~~~~~~~~K~~ 254 (641)
T KOG0352|consen 176 GVPWVALTATANAKVQEDIAFQLKLRNPVAIFKTPTFRDNLFYDN-HMKSFITDCLTVLADFSSSNLGKHEKASQNKKTF 254 (641)
T ss_pred CCceEEeecccChhHHHHHHHHHhhcCcHHhccCcchhhhhhHHH-HHHHHhhhHhHhHHHHHHHhcCChhhhhcCCCCc
Confidence 899999999998765544432 34443333334444444421 0111111111111 1111 0112
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHHHhcCCCeEEEEecchhhccCCC
Q 001722 530 PGDILIFMTGQDEIEAACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAETSLTV 609 (1020)
Q Consensus 530 ~g~ILVFl~g~~eie~l~~~L~e~l~~l~~~~~~~~~~l~vl~lhs~L~~~eq~~I~~~f~~g~rkVIVATniaEtGItI 609 (1020)
.|.-||||.++++||.++-.|.. .++....+|+||...+|..|.+.+.++..-||+||+.+.+|||-
T Consensus 255 ~GCGIVYCRTR~~cEq~AI~l~~-------------~Gi~A~AYHAGLK~~ERTeVQe~WM~~~~PvI~AT~SFGMGVDK 321 (641)
T KOG0352|consen 255 TGCGIVYCRTRNECEQVAIMLEI-------------AGIPAMAYHAGLKKKERTEVQEKWMNNEIPVIAATVSFGMGVDK 321 (641)
T ss_pred CcceEEEeccHHHHHHHHHHhhh-------------cCcchHHHhcccccchhHHHHHHHhcCCCCEEEEEeccccccCC
Confidence 46789999999999999887753 37788899999999999999999999999999999999999999
Q ss_pred CCeeEEEEcCCccceeccCCCCcccccccccCHHHHHHHhcccCCCC-CCEEEEccChhhH
Q 001722 610 DGIFYVIDTGYGKMKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTG-PGTCYRLYTESAY 669 (1020)
Q Consensus 610 p~V~~VID~G~~K~~~yd~~~g~~~L~~~piS~as~~QRaGRAGR~g-~G~cyrLyt~~~~ 669 (1020)
|+|++||+ || .|.+.+.|.|.+|||||.| +..|-..|++++-
T Consensus 322 p~VRFViH--------W~----------~~qn~AgYYQESGRAGRDGk~SyCRLYYsR~D~ 364 (641)
T KOG0352|consen 322 PDVRFVIH--------WS----------PSQNLAGYYQESGRAGRDGKRSYCRLYYSRQDK 364 (641)
T ss_pred cceeEEEe--------cC----------chhhhHHHHHhccccccCCCccceeeeecccch
Confidence 99999998 55 6889999999999999999 5777777777654
No 81
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.91 E-value=1.6e-22 Score=245.01 Aligned_cols=300 Identities=15% Similarity=0.147 Sum_probs=195.4
Q ss_pred CCCcHHHHHHHHHHHHhC---CeEEEEecCCCchHHHHHHHHHHhcccCCCEEEEEcccHHHHHHHHHHHHHHhccccCC
Q 001722 321 YLPIFSVRDELLQVIREN---QVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELGD 397 (1020)
Q Consensus 321 ~LPi~~~q~eil~~i~~~---q~vII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~lA~qva~rva~e~~~~lG~ 397 (1020)
...+++||.+.+..+..+ +..||+.|||+|||.+....+... .++++|++|+.+|+.|....+.+...... .
T Consensus 253 ~~~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~~l----~k~tLILvps~~Lv~QW~~ef~~~~~l~~-~ 327 (732)
T TIGR00603 253 TTQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAACTV----KKSCLVLCTSAVSVEQWKQQFKMWSTIDD-S 327 (732)
T ss_pred CCCcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHHHh----CCCEEEEeCcHHHHHHHHHHHHHhcCCCC-c
Confidence 456789999999998753 367999999999999987655432 35689999999999999998866543222 2
Q ss_pred EEEEEEeee-ecCCCCccEEEEchHHHHHHHh---------cCCCCCCccEEEEeCCCcCCCCccHHHHHHHHHHhhcCC
Q 001722 398 KVGYAIRFE-DVTGPSTLIKYMTDGVLLRETL---------KDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRD 467 (1020)
Q Consensus 398 ~VGy~ir~e-~~~s~~t~I~~~T~g~LLr~ll---------~d~~L~~~s~IIIDEaHERs~~tD~ll~lLk~il~~r~~ 467 (1020)
.++.-.... ........|+++|..++..... ....-..+++||+||||. .. . ..++.++.....
T Consensus 328 ~I~~~tg~~k~~~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~-lp-A----~~fr~il~~l~a 401 (732)
T TIGR00603 328 QICRFTSDAKERFHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHV-VP-A----AMFRRVLTIVQA 401 (732)
T ss_pred eEEEEecCcccccccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEcccc-cc-H----HHHHHHHHhcCc
Confidence 333211111 1112246799999998853211 111124689999999994 22 2 223334333334
Q ss_pred ceEEEEeccC---C--HHHHHHHhCCCCeEee-------cCcccceee--eecCCCch---hHHHH--------------
Q 001722 468 FKLIVTSATL---N--AQKFSDFFGSVPIFHI-------PGRTFPVNT--LYSKTPCE---DYVEA-------------- 516 (1020)
Q Consensus 468 lklIlmSATl---d--~~~f~~~f~~~pvi~i-------~gr~~pV~i--~y~~~~~~---dyl~~-------------- 516 (1020)
...+++|||+ | ...+..+|| ..++.. .|-.-|+.. .+.+.+.. .|+..
T Consensus 402 ~~RLGLTATP~ReD~~~~~L~~LiG-P~vye~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~yl~~~~~~k~~l~~~np~ 480 (732)
T TIGR00603 402 HCKLGLTATLVREDDKITDLNFLIG-PKLYEANWMELQKKGFIANVQCAEVWCPMTPEFYREYLRENSRKRMLLYVMNPN 480 (732)
T ss_pred CcEEEEeecCcccCCchhhhhhhcC-CeeeecCHHHHHhCCccccceEEEEEecCCHHHHHHHHHhcchhhhHHhhhChH
Confidence 4679999999 2 122333343 344433 233333221 11121111 12211
Q ss_pred ---HHHHHHHHhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHHHhcCC-
Q 001722 517 ---AVKQAMTIHITSPPGDILIFMTGQDEIEAACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEG- 592 (1020)
Q Consensus 517 ---av~~~l~i~~~~~~g~ILVFl~g~~eie~l~~~L~e~l~~l~~~~~~~~~~l~vl~lhs~L~~~eq~~I~~~f~~g- 592 (1020)
++..++..|. ..+.++||||.....++.++..|. +..+||.++..+|.++++.|+.|
T Consensus 481 K~~~~~~Li~~he-~~g~kiLVF~~~~~~l~~~a~~L~------------------~~~I~G~ts~~ER~~il~~Fr~~~ 541 (732)
T TIGR00603 481 KFRACQFLIRFHE-QRGDKIIVFSDNVFALKEYAIKLG------------------KPFIYGPTSQQERMQILQNFQHNP 541 (732)
T ss_pred HHHHHHHHHHHHh-hcCCeEEEEeCCHHHHHHHHHHcC------------------CceEECCCCHHHHHHHHHHHHhCC
Confidence 1112233332 356789999998887766655441 23589999999999999999865
Q ss_pred CeEEEEecchhhccCCCCCeeEEEEcCCccceeccCCCCcccccccc-cCHHHHHHHhcccCCCCCC-EE-------EEc
Q 001722 593 TRKCIVATNIAETSLTVDGIFYVIDTGYGKMKVYNPKMGMDALQVFP-VSRAAADQRAGRAGRTGPG-TC-------YRL 663 (1020)
Q Consensus 593 ~rkVIVATniaEtGItIp~V~~VID~G~~K~~~yd~~~g~~~L~~~p-iS~as~~QRaGRAGR~g~G-~c-------yrL 663 (1020)
..++||+|+++.+|||+|++++||. ++ .| -|...|.||+||++|.++| .+ |.|
T Consensus 542 ~i~vLv~SkVgdeGIDlP~a~vvI~--------~s----------~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~l 603 (732)
T TIGR00603 542 KVNTIFLSKVGDTSIDLPEANVLIQ--------IS----------SHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSL 603 (732)
T ss_pred CccEEEEecccccccCCCCCCEEEE--------eC----------CCCCCHHHHHHHhcccccCCCCCccccccceEEEE
Confidence 7899999999999999999999997 33 23 4899999999999999974 44 888
Q ss_pred cChhhH
Q 001722 664 YTESAY 669 (1020)
Q Consensus 664 yt~~~~ 669 (1020)
.++...
T Consensus 604 Vs~dT~ 609 (732)
T TIGR00603 604 VSKDTQ 609 (732)
T ss_pred ecCCch
Confidence 886654
No 82
>PRK14701 reverse gyrase; Provisional
Probab=99.91 E-value=8.4e-23 Score=266.11 Aligned_cols=315 Identities=16% Similarity=0.101 Sum_probs=201.0
Q ss_pred CCcHHHHHHHHHHHHhCCeEEEEecCCCchHHHHHHHHHHhcccCCCEEEEEcccHHHHHHHHHHHHHHhccccC--CEE
Q 001722 322 LPIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELG--DKV 399 (1020)
Q Consensus 322 LPi~~~q~eil~~i~~~q~vII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~lA~qva~rva~e~~~~lG--~~V 399 (1020)
...++.|.+++..+..+++++++||||||||+.+..+.+.. ...+.+++++.|+++|+.|++..+.. ++...| ..+
T Consensus 78 ~~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~-~~~g~~aLVl~PTreLa~Qi~~~l~~-l~~~~~~~v~v 155 (1638)
T PRK14701 78 FEFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFL-ALKGKKCYIILPTTLLVKQTVEKIES-FCEKANLDVRL 155 (1638)
T ss_pred CCCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHH-HhcCCeEEEEECHHHHHHHHHHHHHH-HHhhcCCceeE
Confidence 36889999999999999999999999999999432222221 22356899999999999999999855 333332 223
Q ss_pred EEEEeeee----------cCCCCccEEEEchHHHHHHHhcCCCCCCccEEEEeCCCcCC---CCcc-------HHHHHHH
Q 001722 400 GYAIRFED----------VTGPSTLIKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERS---LSTD-------VLFGILK 459 (1020)
Q Consensus 400 Gy~ir~e~----------~~s~~t~I~~~T~g~LLr~ll~d~~L~~~s~IIIDEaHERs---~~tD-------~ll~lLk 459 (1020)
.+.....+ ......+|+++|+|.|...+..- ...++++|||||||+-. -+.| +.-.+..
T Consensus 156 ~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l-~~~~i~~iVVDEAD~ml~~~knid~~L~llGF~~e~~~ 234 (1638)
T PRK14701 156 VYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEM-KHLKFDFIFVDDVDAFLKASKNIDRSLQLLGFYEEIIE 234 (1638)
T ss_pred EEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHH-hhCCCCEEEEECceeccccccccchhhhcCCChHHHHH
Confidence 22211111 11234789999999887764322 12679999999999531 1222 2111111
Q ss_pred -------------------------HHHhhcC-Cce-EEEEeccCCH-HHHHHHhCCCCeEeecCccc---ceeeeecCC
Q 001722 460 -------------------------KVVARRR-DFK-LIVTSATLNA-QKFSDFFGSVPIFHIPGRTF---PVNTLYSKT 508 (1020)
Q Consensus 460 -------------------------~il~~r~-~lk-lIlmSATld~-~~f~~~f~~~pvi~i~gr~~---pV~i~y~~~ 508 (1020)
..+...+ ..+ ++++|||+.. .....+|...-.+.+..... .+...|...
T Consensus 235 ~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~~~~~l~~~~l~f~v~~~~~~lr~i~~~yi~~ 314 (1638)
T PRK14701 235 KAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAKGDRVKLYRELLGFEVGSGRSALRNIVDVYLNP 314 (1638)
T ss_pred HHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCchhHHHHHhhcCeEEEecCCCCCCCCcEEEEEEC
Confidence 1111112 233 6779999974 34455665433344433221 233344322
Q ss_pred CchhHHHHHHHHHHHHhhcCCCCCEEEEcCCHHHH---HHHHHHHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHH
Q 001722 509 PCEDYVEAAVKQAMTIHITSPPGDILIFMTGQDEI---EAACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKI 585 (1020)
Q Consensus 509 ~~~dyl~~av~~~l~i~~~~~~g~ILVFl~g~~ei---e~l~~~L~e~l~~l~~~~~~~~~~l~vl~lhs~L~~~eq~~I 585 (1020)
...+ . ..+...+.. .+...||||++++.+ +.+++.|.+ .++.+.++||+ |..+
T Consensus 315 ~~~~-k-~~L~~ll~~----~g~~gIVF~~t~~~~e~ae~la~~L~~-------------~Gi~a~~~h~~-----R~~~ 370 (1638)
T PRK14701 315 EKII-K-EHVRELLKK----LGKGGLIFVPIDEGAEKAEEIEKYLLE-------------DGFKIELVSAK-----NKKG 370 (1638)
T ss_pred CHHH-H-HHHHHHHHh----CCCCeEEEEeccccchHHHHHHHHHHH-------------CCCeEEEecch-----HHHH
Confidence 2111 1 122222222 145789999998764 667776654 37889999995 8899
Q ss_pred HHHhcCCCeEEEEec----chhhccCCCCC-eeEEEEcCCcccee----ccCCCCcccccccccCHHHHHHHhcccCCCC
Q 001722 586 FEKAKEGTRKCIVAT----NIAETSLTVDG-IFYVIDTGYGKMKV----YNPKMGMDALQVFPVSRAAADQRAGRAGRTG 656 (1020)
Q Consensus 586 ~~~f~~g~rkVIVAT----niaEtGItIp~-V~~VID~G~~K~~~----yd~~~g~~~L~~~piS~as~~QRaGRAGR~g 656 (1020)
++.|.+|...||||| ++|++|||+|+ |+|||+.|.-|.++ |.+.... ... .....++.|||||.|
T Consensus 371 l~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~-----~~~-~~~~~~~~~~a~~~g 444 (1638)
T PRK14701 371 FDLFEEGEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYR-----ILG-LLSEILKIEEELKEG 444 (1638)
T ss_pred HHHHHcCCCCEEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhh-----hhc-chHHHHHhhhhcccC
Confidence 999999999999999 59999999999 99999999877431 2211110 001 234567889999999
Q ss_pred -CCEEEEccChhhH
Q 001722 657 -PGTCYRLYTESAY 669 (1020)
Q Consensus 657 -~G~cyrLyt~~~~ 669 (1020)
|+.|+..|..+++
T Consensus 445 ~~~~~~~~~~~~~~ 458 (1638)
T PRK14701 445 IPIEGVLDVFPEDV 458 (1638)
T ss_pred CcchhHHHhHHHHH
Confidence 6888766665554
No 83
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=99.90 E-value=4.1e-23 Score=227.19 Aligned_cols=305 Identities=17% Similarity=0.259 Sum_probs=219.5
Q ss_pred HHHHHHHHHHHhCCeEEEEecCCCchHHHHHHHHHHhccc--CCCEEEEEcccHHHHHHHHHHHHHHhccccCCE----E
Q 001722 326 SVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYT--TNGIVGCTQPRRVAAMSVAKRVSEEMDTELGDK----V 399 (1020)
Q Consensus 326 ~~q~eil~~i~~~q~vII~gpTGSGKTtqi~q~Lle~~~~--~~~~Il~tqPrR~lA~qva~rva~e~~~~lG~~----V 399 (1020)
+.|+.++..+..+.++++.+.+|+|||.++...++...-. ....++++.|+|+||.|+.+.+ ..+|...+-. +
T Consensus 51 aIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~~~ke~qalilaPtreLa~qi~~v~-~~lg~~~~~~v~~~i 129 (397)
T KOG0327|consen 51 AIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDMSVKETQALILAPTRELAQQIQKVV-RALGDHMDVSVHACI 129 (397)
T ss_pred HHHhccccccccCCceeEeeeccccchhhhHHHHHhhcCcchHHHHHHHhcchHHHHHHHHHHH-Hhhhcccceeeeeec
Confidence 4455555556688999999999999999977777665311 1236788999999999999544 5555443322 2
Q ss_pred EEEEee-ee--cCCCCccEEEEchHHHHHHHhcCCC-CCCccEEEEeCCCcCCCCccHHHHHHHHHHhhcCCceEEEEec
Q 001722 400 GYAIRF-ED--VTGPSTLIKYMTDGVLLRETLKDSD-LDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTSA 475 (1020)
Q Consensus 400 Gy~ir~-e~--~~s~~t~I~~~T~g~LLr~ll~d~~-L~~~s~IIIDEaHERs~~tD~ll~lLk~il~~r~~lklIlmSA 475 (1020)
|..... +. .......|++.|||..+..+..... ...+.++|+|||+|+-. -++.-.+-.......++.+++++||
T Consensus 130 gg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~~l~~~~iKmfvlDEaDEmLs-~gfkdqI~~if~~lp~~vQv~l~SA 208 (397)
T KOG0327|consen 130 GGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRGSLSTDGIKMFVLDEADEMLS-RGFKDQIYDIFQELPSDVQVVLLSA 208 (397)
T ss_pred CcccchhhhhhhhccCceeecCCchhHHHhhccccccccceeEEeecchHhhhc-cchHHHHHHHHHHcCcchhheeecc
Confidence 222111 11 1223468999999999888765543 45689999999997332 2232222222233567899999999
Q ss_pred cC--CHHHHHHHhCCCCeEeecCcc---c-ceeeeecCCCchhHHHHHHHHHHHHhhcCCCCCEEEEcCCHHHHHHHHHH
Q 001722 476 TL--NAQKFSDFFGSVPIFHIPGRT---F-PVNTLYSKTPCEDYVEAAVKQAMTIHITSPPGDILIFMTGQDEIEAACFA 549 (1020)
Q Consensus 476 Tl--d~~~f~~~f~~~pvi~i~gr~---~-pV~i~y~~~~~~dyl~~av~~~l~i~~~~~~g~ILVFl~g~~eie~l~~~ 549 (1020)
|+ +...+.+-|...|+...-.+. . -+..+|.....+. .+.....++. .-...+|||++++.+..+...
T Consensus 209 T~p~~vl~vt~~f~~~pv~i~vkk~~ltl~gikq~~i~v~k~~----k~~~l~dl~~--~~~q~~if~nt~r~v~~l~~~ 282 (397)
T KOG0327|consen 209 TMPSDVLEVTKKFMREPVRILVKKDELTLEGIKQFYINVEKEE----KLDTLCDLYR--RVTQAVIFCNTRRKVDNLTDK 282 (397)
T ss_pred cCcHHHHHHHHHhccCceEEEecchhhhhhheeeeeeeccccc----cccHHHHHHH--hhhcceEEecchhhHHHHHHH
Confidence 99 466677777776654332111 0 0122222211111 3334444444 457789999999999999988
Q ss_pred HHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHHHhcCCCeEEEEecchhhccCCCCCeeEEEEcCCccceeccCC
Q 001722 550 LKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAETSLTVDGIFYVIDTGYGKMKVYNPK 629 (1020)
Q Consensus 550 L~e~l~~l~~~~~~~~~~l~vl~lhs~L~~~eq~~I~~~f~~g~rkVIVATniaEtGItIp~V~~VID~G~~K~~~yd~~ 629 (1020)
|.. .+..+..+|+.|.+.+|..+...|+.|..+|+|.|+.+++|+|+-.+..||+ ||
T Consensus 283 L~~-------------~~~~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl~argidv~~~slvin--------yd-- 339 (397)
T KOG0327|consen 283 LRA-------------HGFTVSAIHGDMEQNERDTLMREFRSGSSRVLITTDLLARGIDVQQVSLVVN--------YD-- 339 (397)
T ss_pred Hhh-------------CCceEEEeecccchhhhhHHHHHhhcCCceEEeeccccccccchhhcceeee--------ec--
Confidence 843 3788999999999999999999999999999999999999999999999998 66
Q ss_pred CCcccccccccCHHHHHHHhcccCCCC-CCEEEEccChhhH
Q 001722 630 MGMDALQVFPVSRAAADQRAGRAGRTG-PGTCYRLYTESAY 669 (1020)
Q Consensus 630 ~g~~~L~~~piS~as~~QRaGRAGR~g-~G~cyrLyt~~~~ 669 (1020)
.|..+.+|.||+||+||.| +|....++++.+.
T Consensus 340 --------lP~~~~~yihR~gr~gr~grkg~~in~v~~~d~ 372 (397)
T KOG0327|consen 340 --------LPARKENYIHRIGRAGRFGRKGVAINFVTEEDV 372 (397)
T ss_pred --------cccchhhhhhhcccccccCCCceeeeeehHhhH
Confidence 7999999999999999999 6999999998765
No 84
>PRK09694 helicase Cas3; Provisional
Probab=99.90 E-value=3.9e-22 Score=247.54 Aligned_cols=301 Identities=18% Similarity=0.148 Sum_probs=186.4
Q ss_pred CCcHHHHHHHHHHHHhCCeEEEEecCCCchHHHHHHHHHHhcc-cCCCEEEEEcccHHHHHHHHHHHHHHhccccC-CEE
Q 001722 322 LPIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGY-TTNGIVGCTQPRRVAAMSVAKRVSEEMDTELG-DKV 399 (1020)
Q Consensus 322 LPi~~~q~eil~~i~~~q~vII~gpTGSGKTtqi~q~Lle~~~-~~~~~Il~tqPrR~lA~qva~rva~e~~~~lG-~~V 399 (1020)
...+++|..+......+..+||.+|||+|||.++..++..... ....+|++..||++++++++.|+.+.+....+ ..|
T Consensus 285 ~~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~~l~~~~~~~gi~~aLPT~Atan~m~~Rl~~~~~~~f~~~~v 364 (878)
T PRK09694 285 YQPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAWRLIDQGLADSIIFALPTQATANAMLSRLEALASKLFPSPNL 364 (878)
T ss_pred CCChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHHHHHHhCCCCeEEEECcHHHHHHHHHHHHHHHHHHhcCCCce
Confidence 3568889988665556788999999999999997665543221 12358999999999999999999753221111 112
Q ss_pred EE----EE---eeee--------------------------cCCCCccEEEEchHHHHHHHhcCC--CCC----CccEEE
Q 001722 400 GY----AI---RFED--------------------------VTGPSTLIKYMTDGVLLRETLKDS--DLD----KYRVIV 440 (1020)
Q Consensus 400 Gy----~i---r~e~--------------------------~~s~~t~I~~~T~g~LLr~ll~d~--~L~----~~s~II 440 (1020)
+. .. .+.. +..--..|+++|...++...+.-+ .+. .-++||
T Consensus 365 ~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~~La~svvI 444 (878)
T PRK09694 365 ILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGFGLGRSVLI 444 (878)
T ss_pred EeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHHhhccCeEE
Confidence 11 10 0000 000125799999988886554332 122 236999
Q ss_pred EeCCCcCCCCcc-HHHHHHHHHHhhcCCceEEEEeccCCHHHH---HHHhCCC---------CeEeecC----cccc---
Q 001722 441 MDEAHERSLSTD-VLFGILKKVVARRRDFKLIVTSATLNAQKF---SDFFGSV---------PIFHIPG----RTFP--- 500 (1020)
Q Consensus 441 IDEaHERs~~tD-~ll~lLk~il~~r~~lklIlmSATld~~~f---~~~f~~~---------pvi~i~g----r~~p--- 500 (1020)
|||+|.-...+. +|..+|+.+.. ...++|+||||+....- .+-++.. |.+...+ ..++
T Consensus 445 iDEVHAyD~ym~~lL~~~L~~l~~--~g~~vIllSATLP~~~r~~L~~a~~~~~~~~~~~~YPlvt~~~~~~~~~~~~~~ 522 (878)
T PRK09694 445 VDEVHAYDAYMYGLLEAVLKAQAQ--AGGSVILLSATLPATLKQKLLDTYGGHDPVELSSAYPLITWRGVNGAQRFDLSA 522 (878)
T ss_pred EechhhCCHHHHHHHHHHHHHHHh--cCCcEEEEeCCCCHHHHHHHHHHhccccccccccccccccccccccceeeeccc
Confidence 999997655544 34444444332 35789999999964433 2222221 2211110 0000
Q ss_pred ----------eeeeecCCCchhHHHHHHHHHHHHhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHHHhhccccCCCCCeEE
Q 001722 501 ----------VNTLYSKTPCEDYVEAAVKQAMTIHITSPPGDILIFMTGQDEIEAACFALKERMEQLISSTTREVPELLI 570 (1020)
Q Consensus 501 ----------V~i~y~~~~~~dyl~~av~~~l~i~~~~~~g~ILVFl~g~~eie~l~~~L~e~l~~l~~~~~~~~~~l~v 570 (1020)
+.+.........-....+..++.. ...++.+|||||+.+.++.+++.|.+.. .....+
T Consensus 523 ~~~~~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~--~~~g~~vLVf~NTV~~Aq~ly~~L~~~~----------~~~~~v 590 (878)
T PRK09694 523 HPEQLPARFTIQLEPICLADMLPDLTLLQRMIAA--ANAGAQVCLICNLVDDAQKLYQRLKELN----------NTQVDI 590 (878)
T ss_pred cccccCcceEEEEEeeccccccCHHHHHHHHHHH--HhcCCEEEEEECCHHHHHHHHHHHHhhC----------CCCceE
Confidence 111100000000011222222221 1346789999999999999999887531 124678
Q ss_pred EEecCCCCHHHHH----HHHHHh-cCCC---eEEEEecchhhccCCCCCeeEEEEcCCccceeccCCCCcccccccccCH
Q 001722 571 LPIYSQLPADLQA----KIFEKA-KEGT---RKCIVATNIAETSLTVDGIFYVIDTGYGKMKVYNPKMGMDALQVFPVSR 642 (1020)
Q Consensus 571 l~lhs~L~~~eq~----~I~~~f-~~g~---rkVIVATniaEtGItIp~V~~VID~G~~K~~~yd~~~g~~~L~~~piS~ 642 (1020)
..+||.++..+|. ++++.| ++|. .+|||||+++|.||||+ +++||.- ..| .
T Consensus 591 ~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDId-~DvlItd------------------laP--i 649 (878)
T PRK09694 591 DLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDLD-FDWLITQ------------------LCP--V 649 (878)
T ss_pred EEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeecC-CCeEEEC------------------CCC--H
Confidence 9999999999994 566677 5665 48999999999999995 7888841 134 5
Q ss_pred HHHHHHhcccCCCCC
Q 001722 643 AAADQRAGRAGRTGP 657 (1020)
Q Consensus 643 as~~QRaGRAGR~g~ 657 (1020)
++++||+||+||.+.
T Consensus 650 dsLiQRaGR~~R~~~ 664 (878)
T PRK09694 650 DLLFQRLGRLHRHHR 664 (878)
T ss_pred HHHHHHHhccCCCCC
Confidence 799999999999863
No 85
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.90 E-value=2.4e-22 Score=247.00 Aligned_cols=312 Identities=17% Similarity=0.167 Sum_probs=199.1
Q ss_pred CCcHHHHHHHHHHHHh---CCeEEEEecCCCchHHHHHHHHHHhcccCCCEEEEEcccHHHHHHHHHHHHHHhccccCCE
Q 001722 322 LPIFSVRDELLQVIRE---NQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELGDK 398 (1020)
Q Consensus 322 LPi~~~q~eil~~i~~---~q~vII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~lA~qva~rva~e~~~~lG~~ 398 (1020)
..+++.|+++++.+.+ ++++++.|+||||||.++...+.+. +..+++++++.|+++|+.|+++++.+.++..+...
T Consensus 143 ~~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~-l~~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~ 221 (679)
T PRK05580 143 PTLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEV-LAQGKQALVLVPEIALTPQMLARFRARFGAPVAVL 221 (679)
T ss_pred CCCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHH-HHcCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEE
Confidence 4578899999999987 4889999999999999987766554 33467899999999999999999987765332211
Q ss_pred EEEEEee------eecCCCCccEEEEchHHHHHHHhcCCCCCCccEEEEeCCCcCCCCccHH----HHHHHHHHhhcCCc
Q 001722 399 VGYAIRF------EDVTGPSTLIKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVL----FGILKKVVARRRDF 468 (1020)
Q Consensus 399 VGy~ir~------e~~~s~~t~I~~~T~g~LLr~ll~d~~L~~~s~IIIDEaHERs~~tD~l----l~lLk~il~~r~~l 468 (1020)
.|..-.. ........+|+++|.+.+. ..+.++++|||||+|+-+...+-- ..-+........+.
T Consensus 222 ~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~------~p~~~l~liVvDEeh~~s~~~~~~p~y~~r~va~~ra~~~~~ 295 (679)
T PRK05580 222 HSGLSDGERLDEWRKAKRGEAKVVIGARSALF------LPFKNLGLIIVDEEHDSSYKQQEGPRYHARDLAVVRAKLENI 295 (679)
T ss_pred ECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc------ccccCCCEEEEECCCccccccCcCCCCcHHHHHHHHhhccCC
Confidence 1100000 0012345789999998764 237889999999999755443210 01111222345688
Q ss_pred eEEEEeccCCHHHHHHHhCC-CCeEeecCcc----cc-eeeeecCC--------CchhHHHHHHHHHHHHhhcCCCCCEE
Q 001722 469 KLIVTSATLNAQKFSDFFGS-VPIFHIPGRT----FP-VNTLYSKT--------PCEDYVEAAVKQAMTIHITSPPGDIL 534 (1020)
Q Consensus 469 klIlmSATld~~~f~~~f~~-~pvi~i~gr~----~p-V~i~y~~~--------~~~dyl~~av~~~l~i~~~~~~g~IL 534 (1020)
++|++|||+..+.+.....+ ...+.++.+. .| +.+.-... .....+-..+...+ ..+.++|
T Consensus 296 ~~il~SATps~~s~~~~~~g~~~~~~l~~r~~~~~~p~v~~id~~~~~~~~~~~~ls~~l~~~i~~~l-----~~g~qvl 370 (679)
T PRK05580 296 PVVLGSATPSLESLANAQQGRYRLLRLTKRAGGARLPEVEIIDMRELLRGENGSFLSPPLLEAIKQRL-----ERGEQVL 370 (679)
T ss_pred CEEEEcCCCCHHHHHHHhccceeEEEeccccccCCCCeEEEEechhhhhhcccCCCCHHHHHHHHHHH-----HcCCeEE
Confidence 99999999998887765432 3344444332 33 22221111 01111222222222 2245788
Q ss_pred EEcCCHH------------------------------------------------------------HHHHHHHHHHHHH
Q 001722 535 IFMTGQD------------------------------------------------------------EIEAACFALKERM 554 (1020)
Q Consensus 535 VFl~g~~------------------------------------------------------------eie~l~~~L~e~l 554 (1020)
||+|.+. .++.+++.|.+
T Consensus 371 l~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l~~~g~G~e~~~e~l~~-- 448 (679)
T PRK05580 371 LFLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTDLVPVGPGTERLEEELAE-- 448 (679)
T ss_pred EEEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCeeEEeeccHHHHHHHHHH--
Confidence 8877532 22233333322
Q ss_pred HHhhccccCCCCCeEEEEecCCCC--HHHHHHHHHHhcCCCeEEEEecchhhccCCCCCeeEEEEcCCccceeccCCCCc
Q 001722 555 EQLISSTTREVPELLILPIYSQLP--ADLQAKIFEKAKEGTRKCIVATNIAETSLTVDGIFYVIDTGYGKMKVYNPKMGM 632 (1020)
Q Consensus 555 ~~l~~~~~~~~~~l~vl~lhs~L~--~~eq~~I~~~f~~g~rkVIVATniaEtGItIp~V~~VID~G~~K~~~yd~~~g~ 632 (1020)
..|+..|..+|++++ .+++.++++.|.+|+..|||+|++++.|+|+|+|.+|+-.. .|....+
T Consensus 449 ---------~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~------aD~~l~~ 513 (679)
T PRK05580 449 ---------LFPEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLD------ADLGLFS 513 (679)
T ss_pred ---------hCCCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEc------CchhccC
Confidence 246778999999987 46788999999999999999999999999999999985311 2211111
Q ss_pred ccccccccCHHHHHHHhcccCCCC-CCEEEE
Q 001722 633 DALQVFPVSRAAADQRAGRAGRTG-PGTCYR 662 (1020)
Q Consensus 633 ~~L~~~piS~as~~QRaGRAGR~g-~G~cyr 662 (1020)
..+...--....+.|++|||||.+ +|.|+.
T Consensus 514 pdfra~Er~~~~l~q~~GRagR~~~~g~vii 544 (679)
T PRK05580 514 PDFRASERTFQLLTQVAGRAGRAEKPGEVLI 544 (679)
T ss_pred CccchHHHHHHHHHHHHhhccCCCCCCEEEE
Confidence 111111123467899999999976 588874
No 86
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.90 E-value=5.1e-22 Score=242.65 Aligned_cols=312 Identities=21% Similarity=0.215 Sum_probs=199.7
Q ss_pred HcCCCcHHHHHHHHHHHHhCCeEEEEecCCCchHHHHHHHHHHhcccCCCEEEEEcccHHHHHHHHHHHHHHhccccCCE
Q 001722 319 RQYLPIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELGDK 398 (1020)
Q Consensus 319 R~~LPi~~~q~eil~~i~~~q~vII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~lA~qva~rva~e~~~~lG~~ 398 (1020)
++.|-++++.-+++-.+.-++..|+.+.||+|||.++..+++...+. +..+.++.|++.||.+.+..+... ...+|..
T Consensus 72 ~R~~g~~p~~vQl~~~~~l~~G~Iaem~TGeGKTL~a~lp~~l~al~-G~~v~VvTpt~~LA~qd~e~~~~l-~~~lGl~ 149 (790)
T PRK09200 72 KRVLGMRPYDVQLIGALVLHEGNIAEMQTGEGKTLTATMPLYLNALE-GKGVHLITVNDYLAKRDAEEMGQV-YEFLGLT 149 (790)
T ss_pred HHHhCCCCchHHHHhHHHHcCCceeeecCCCcchHHHHHHHHHHHHc-CCCeEEEeCCHHHHHHHHHHHHHH-HhhcCCe
Confidence 44455555555555555545555999999999999988887755544 567888999999999999987544 4457888
Q ss_pred EEEEEeeee-----cCCCCccEEEEchHHH----HHH-Hhc---CCCCCCccEEEEeCCCc------CCC-----C---c
Q 001722 399 VGYAIRFED-----VTGPSTLIKYMTDGVL----LRE-TLK---DSDLDKYRVIVMDEAHE------RSL-----S---T 451 (1020)
Q Consensus 399 VGy~ir~e~-----~~s~~t~I~~~T~g~L----Lr~-ll~---d~~L~~~s~IIIDEaHE------Rs~-----~---t 451 (1020)
||..+...+ ...-..+|+|+|++.| |+. +.. +..+..+.++||||||. |+. . .
T Consensus 150 v~~i~g~~~~~~~r~~~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiLiDea~tpliisg~~~~~ 229 (790)
T PRK09200 150 VGLNFSDIDDASEKKAIYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSILLDEAQTPLIISGKPRVQ 229 (790)
T ss_pred EEEEeCCCCcHHHHHHhcCCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccceeccCCCceeeeCCCccc
Confidence 886554333 1123578999999988 222 211 12468889999999992 211 0 0
Q ss_pred cHHHHHHHHHHhhc---------CC-------------------------------------------------------
Q 001722 452 DVLFGILKKVVARR---------RD------------------------------------------------------- 467 (1020)
Q Consensus 452 D~ll~lLk~il~~r---------~~------------------------------------------------------- 467 (1020)
..+......+.... .+
T Consensus 230 ~~~y~~~~~~~~~l~~~~dy~~d~~~~~~~lt~~g~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A~~~~~~d~dYiV~~ 309 (790)
T PRK09200 230 SNLYHIAAKFVKTLEEDVDYEFDEEKKEVWLTDQGIEKAESYFGIDNLYSLEHQVLYRHIILALRAHVLFKRDVDYIVYD 309 (790)
T ss_pred cHHHHHHHHHHHhcccCCCeEEecCCCeEEecHhHHHHHHHhcCCccccChhhhHHHHHHHHHHHHHHHhhcCCcEEEEC
Confidence 11122221221110 01
Q ss_pred ------------------------------------------------------ceEEEEeccCC--HHHHHHHhCCCCe
Q 001722 468 ------------------------------------------------------FKLIVTSATLN--AQKFSDFFGSVPI 491 (1020)
Q Consensus 468 ------------------------------------------------------lklIlmSATld--~~~f~~~f~~~pv 491 (1020)
.++.+||.|.. .+.|.+.+ +.++
T Consensus 310 ~~v~ivD~~TGr~~~gr~~s~GlhQaieaKe~v~i~~e~~t~a~It~q~~fr~Y~kl~GmTGTa~t~~~e~~~~Y-~l~v 388 (790)
T PRK09200 310 GEIVLVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGTAKTEEKEFFEVY-NMEV 388 (790)
T ss_pred CEEEEEECCCCcCCCCCccChHHHHHHHHhcCCCcCCCceehhhhhHHHHHHHhHHHhccCCCChHHHHHHHHHh-CCcE
Confidence 12333333331 11222211 1233
Q ss_pred EeecCcccceeeeecC----CCchhHHHHHHHHHHHHhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHHHhhccccCCCCC
Q 001722 492 FHIPGRTFPVNTLYSK----TPCEDYVEAAVKQAMTIHITSPPGDILIFMTGQDEIEAACFALKERMEQLISSTTREVPE 567 (1020)
Q Consensus 492 i~i~gr~~pV~i~y~~----~~~~dyl~~av~~~l~i~~~~~~g~ILVFl~g~~eie~l~~~L~e~l~~l~~~~~~~~~~ 567 (1020)
+.||... |+...-.+ ....+...+.+..+...| ..+.++||||++.+.++.++..|.+. +
T Consensus 389 ~~IPt~k-p~~r~d~~~~i~~~~~~K~~al~~~i~~~~--~~~~pvLIf~~t~~~se~l~~~L~~~-------------g 452 (790)
T PRK09200 389 VQIPTNR-PIIRIDYPDKVFVTLDEKYKAVIEEVKERH--ETGRPVLIGTGSIEQSETFSKLLDEA-------------G 452 (790)
T ss_pred EECCCCC-CcccccCCCeEEcCHHHHHHHHHHHHHHHH--hcCCCEEEEeCcHHHHHHHHHHHHHC-------------C
Confidence 3333211 11000000 011222233333333333 24678999999999999998888652 6
Q ss_pred eEEEEecCCCCHHHHHHHHHHhcCCCeEEEEecchhhccCCC---CCee-----EEEEcCCccceeccCCCCcccccccc
Q 001722 568 LLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAETSLTV---DGIF-----YVIDTGYGKMKVYNPKMGMDALQVFP 639 (1020)
Q Consensus 568 l~vl~lhs~L~~~eq~~I~~~f~~g~rkVIVATniaEtGItI---p~V~-----~VID~G~~K~~~yd~~~g~~~L~~~p 639 (1020)
+.+..+||.+...++..+...+..| .|+||||+|++|+|| |+|. +||+ || .|
T Consensus 453 i~~~~L~~~~~~~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~--------~d----------~p 512 (790)
T PRK09200 453 IPHNLLNAKNAAKEAQIIAEAGQKG--AVTVATNMAGRGTDIKLGEGVHELGGLAVIG--------TE----------RM 512 (790)
T ss_pred CCEEEecCCccHHHHHHHHHcCCCC--eEEEEccchhcCcCCCcccccccccCcEEEe--------cc----------CC
Confidence 7788999999988888887777665 799999999999999 7998 9998 44 69
Q ss_pred cCHHHHHHHhcccCCCC-CCEEEEccChhhH
Q 001722 640 VSRAAADQRAGRAGRTG-PGTCYRLYTESAY 669 (1020)
Q Consensus 640 iS~as~~QRaGRAGR~g-~G~cyrLyt~~~~ 669 (1020)
.|...|.||+|||||.| +|.|+.+++.++.
T Consensus 513 ~s~r~y~qr~GRtGR~G~~G~s~~~is~eD~ 543 (790)
T PRK09200 513 ESRRVDLQLRGRSGRQGDPGSSQFFISLEDD 543 (790)
T ss_pred CCHHHHHHhhccccCCCCCeeEEEEEcchHH
Confidence 99999999999999999 6999999987653
No 87
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.90 E-value=1.2e-21 Score=235.00 Aligned_cols=310 Identities=21% Similarity=0.180 Sum_probs=205.6
Q ss_pred HcCCCcHHHHHHHHHHHHhCCeEEEEecCCCchHHHHHHHHHHhcccCCCEEEEEcccHHHHHHHHHHHHHHhccccCCE
Q 001722 319 RQYLPIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELGDK 398 (1020)
Q Consensus 319 R~~LPi~~~q~eil~~i~~~q~vII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~lA~qva~rva~e~~~~lG~~ 398 (1020)
--.+-.|++|...+..+..|+ |..+.||+|||.++..+++..... +..+.|+.|++.||.+.+..+...+ ..+|..
T Consensus 99 ~lg~~p~~VQ~~~~~~ll~G~--Iae~~TGeGKTla~~lp~~~~al~-G~~v~VvTptreLA~qdae~~~~l~-~~lGls 174 (656)
T PRK12898 99 VLGQRHFDVQLMGGLALLSGR--LAEMQTGEGKTLTATLPAGTAALA-GLPVHVITVNDYLAERDAELMRPLY-EALGLT 174 (656)
T ss_pred HhCCCCChHHHHHHHHHhCCC--eeeeeCCCCcHHHHHHHHHHHhhc-CCeEEEEcCcHHHHHHHHHHHHHHH-hhcCCE
Confidence 345677899999999999998 899999999999998888877654 5689999999999999999885544 457778
Q ss_pred EEEEEeeeec----CCCCccEEEEchHHHHHHHhcC---------------------------CCCCCccEEEEeCCCc-
Q 001722 399 VGYAIRFEDV----TGPSTLIKYMTDGVLLRETLKD---------------------------SDLDKYRVIVMDEAHE- 446 (1020)
Q Consensus 399 VGy~ir~e~~----~s~~t~I~~~T~g~LLr~ll~d---------------------------~~L~~~s~IIIDEaHE- 446 (1020)
||..+...+. ..-.++|+|+|+.-|---.+.| .....+.+.|||||+.
T Consensus 175 v~~i~gg~~~~~r~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~~aIvDEvDSi 254 (656)
T PRK12898 175 VGCVVEDQSPDERRAAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLRGLHFAIVDEADSV 254 (656)
T ss_pred EEEEeCCCCHHHHHHHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhcccccceeEeecccce
Confidence 8765544321 1236789999987653221111 2245678899999881
Q ss_pred -----CC-------C--C--ccHHHHH----------------------------------------------------H
Q 001722 447 -----RS-------L--S--TDVLFGI----------------------------------------------------L 458 (1020)
Q Consensus 447 -----Rs-------~--~--tD~ll~l----------------------------------------------------L 458 (1020)
|+ . . .++.... +
T Consensus 255 LiDeartpliis~~~~~~~~~~~y~~~~~~~~~l~~~~~y~~d~~~~~v~lt~~g~~~~e~~~~~l~~~~~~~~~~~~~i 334 (656)
T PRK12898 255 LIDEARTPLIISAPAKEADEAEVYRQALELAAQLKEGEDYTIDAAEKRIELTEAGRARIAELAESLPPAWRGAVRREELV 334 (656)
T ss_pred eeccCCCceEEECCCCCCchhHHHHHHHHHHHhcCCCCceEEECCCCeEEEcHHHHHHHHHHhCcchhhcccchHHHHHH
Confidence 10 0 0 0110000 0
Q ss_pred HHHHhh----cCC-------------------------------------------------------------ceEEEE
Q 001722 459 KKVVAR----RRD-------------------------------------------------------------FKLIVT 473 (1020)
Q Consensus 459 k~il~~----r~~-------------------------------------------------------------lklIlm 473 (1020)
...+.. ..+ .++-+|
T Consensus 335 ~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~w~~GLhQaieaKE~v~i~~e~~t~a~It~q~~Fr~Y~kl~Gm 414 (656)
T PRK12898 335 RQALSALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQMIEAKEGCELTDPRETLARITYQRFFRRYLRLAGM 414 (656)
T ss_pred HHHHHHHHHHhcCCceEEECCeEEEEECCCCeECCCCCcChHHHHHHHHhcCCCCCcCceeeeeehHHHHHHhhHHHhcc
Confidence 000000 000 356777
Q ss_pred eccCC--HHHHHHHhCCCCeEeecCcccceee---eecCCCchhHHHHHHHHHHHHhhcCCCCCEEEEcCCHHHHHHHHH
Q 001722 474 SATLN--AQKFSDFFGSVPIFHIPGRTFPVNT---LYSKTPCEDYVEAAVKQAMTIHITSPPGDILIFMTGQDEIEAACF 548 (1020)
Q Consensus 474 SATld--~~~f~~~f~~~pvi~i~gr~~pV~i---~y~~~~~~dyl~~av~~~l~i~~~~~~g~ILVFl~g~~eie~l~~ 548 (1020)
|||+. .+.|.+.|+- .++.||-..-.... .+...+..+.....+..+...+ ..+.++||||++.+.++.++.
T Consensus 415 TGTa~~~~~El~~~y~l-~vv~IPt~kp~~r~~~~~~v~~t~~~K~~aL~~~i~~~~--~~~~pvLIft~t~~~se~L~~ 491 (656)
T PRK12898 415 TGTAREVAGELWSVYGL-PVVRIPTNRPSQRRHLPDEVFLTAAAKWAAVAARVRELH--AQGRPVLVGTRSVAASERLSA 491 (656)
T ss_pred cCcChHHHHHHHHHHCC-CeEEeCCCCCccceecCCEEEeCHHHHHHHHHHHHHHHH--hcCCCEEEEeCcHHHHHHHHH
Confidence 77773 3455555543 34445532211100 0111112233333333333322 234679999999999999999
Q ss_pred HHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHHHhcCCCeEEEEecchhhccCCCC---Cee-----EEEEcCC
Q 001722 549 ALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAETSLTVD---GIF-----YVIDTGY 620 (1020)
Q Consensus 549 ~L~e~l~~l~~~~~~~~~~l~vl~lhs~L~~~eq~~I~~~f~~g~rkVIVATniaEtGItIp---~V~-----~VID~G~ 620 (1020)
.|.+. ++.+..+||.+...++..+ .+..+...|+||||+|.+|+||+ +|. +||+
T Consensus 492 ~L~~~-------------gi~~~~Lhg~~~~rE~~ii--~~ag~~g~VlVATdmAgRGtDI~l~~~V~~~GGLhVI~--- 553 (656)
T PRK12898 492 LLREA-------------GLPHQVLNAKQDAEEAAIV--ARAGQRGRITVATNMAGRGTDIKLEPGVAARGGLHVIL--- 553 (656)
T ss_pred HHHHC-------------CCCEEEeeCCcHHHHHHHH--HHcCCCCcEEEEccchhcccCcCCccchhhcCCCEEEE---
Confidence 88652 6788999999765554444 44445567999999999999999 776 9998
Q ss_pred ccceeccCCCCcccccccccCHHHHHHHhcccCCCC-CCEEEEccChhh
Q 001722 621 GKMKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTG-PGTCYRLYTESA 668 (1020)
Q Consensus 621 ~K~~~yd~~~g~~~L~~~piS~as~~QRaGRAGR~g-~G~cyrLyt~~~ 668 (1020)
|| .|.|...|.||+|||||.| +|.|+.+++.++
T Consensus 554 -----~d----------~P~s~r~y~hr~GRTGRqG~~G~s~~~is~eD 587 (656)
T PRK12898 554 -----TE----------RHDSARIDRQLAGRCGRQGDPGSYEAILSLED 587 (656)
T ss_pred -----cC----------CCCCHHHHHHhcccccCCCCCeEEEEEechhH
Confidence 44 6999999999999999999 799999999755
No 88
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.90 E-value=7.7e-23 Score=253.10 Aligned_cols=307 Identities=21% Similarity=0.208 Sum_probs=212.5
Q ss_pred cHHHHHHHHHHHHhCCeEEEEecCCCchHHHHHHHHHHhcccCCCEEEEEcccHHHHHHHHHHHHHHhccc---cCCEEE
Q 001722 324 IFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTE---LGDKVG 400 (1020)
Q Consensus 324 i~~~q~eil~~i~~~q~vII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~lA~qva~rva~e~~~~---lG~~VG 400 (1020)
-.+.|.++|.+++.|++++|..|||+|||.++.++.+-. ++..+|+.|...|...+...+.. .+.. ++..-+
T Consensus 265 FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l~----~gitvVISPL~SLm~DQv~~L~~-~~I~a~~L~s~q~ 339 (941)
T KOG0351|consen 265 FRPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALLL----GGVTVVISPLISLMQDQVTHLSK-KGIPACFLSSIQT 339 (941)
T ss_pred CChhHHHHHHHHHcCCceEEEeecCCceeeEeecccccc----CCceEEeccHHHHHHHHHHhhhh-cCcceeecccccc
Confidence 346789999999999999999999999999764433221 45788999999999988877722 2211 111000
Q ss_pred EE---EeeeecCC--CCccEEEEchHHHHHHHh---cCCCCCC---ccEEEEeCCCcCCCCc-cH--HHHHHHHHHhhcC
Q 001722 401 YA---IRFEDVTG--PSTLIKYMTDGVLLRETL---KDSDLDK---YRVIVMDEAHERSLST-DV--LFGILKKVVARRR 466 (1020)
Q Consensus 401 y~---ir~e~~~s--~~t~I~~~T~g~LLr~ll---~d~~L~~---~s~IIIDEaHERs~~t-D~--ll~lLk~il~~r~ 466 (1020)
.. ..+..... +..+|+|+||+.+...-. ....|.. +..+||||||+-+-++ || ....|..+..+.+
T Consensus 340 ~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVSqWgHdFRp~Yk~l~~l~~~~~ 419 (941)
T KOG0351|consen 340 AAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVSQWGHDFRPSYKRLGLLRIRFP 419 (941)
T ss_pred HHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhhhhcccccHHHHHHHHHHhhCC
Confidence 00 00111112 367899999998755311 1122444 8999999999744433 22 2333444455677
Q ss_pred CceEEEEeccCCHHH---HHHHhC--CCCeEeecCcccceeeeecCCCchhHHHHHHHHHHHHhhcCCCCCEEEEcCCHH
Q 001722 467 DFKLIVTSATLNAQK---FSDFFG--SVPIFHIPGRTFPVNTLYSKTPCEDYVEAAVKQAMTIHITSPPGDILIFMTGQD 541 (1020)
Q Consensus 467 ~lklIlmSATld~~~---f~~~f~--~~pvi~i~gr~~pV~i~y~~~~~~dyl~~av~~~l~i~~~~~~g~ILVFl~g~~ 541 (1020)
.+.+|.+|||..... +.+-++ +++++. .... +-..+|.-.+..+ ...+......+....+.+.+||+|.++.
T Consensus 420 ~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~-~sfn-R~NL~yeV~~k~~-~~~~~~~~~~~~~~~~~~s~IIYC~sr~ 496 (941)
T KOG0351|consen 420 GVPFIALTATATERVREDVIRSLGLRNPELFK-SSFN-RPNLKYEVSPKTD-KDALLDILEESKLRHPDQSGIIYCLSRK 496 (941)
T ss_pred CCCeEEeehhccHHHHHHHHHHhCCCCcceec-ccCC-CCCceEEEEeccC-ccchHHHHHHhhhcCCCCCeEEEeCCcc
Confidence 889999999996443 333332 233222 1111 1122221111110 1112222233334456789999999999
Q ss_pred HHHHHHHHHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHHHhcCCCeEEEEecchhhccCCCCCeeEEEEcCCc
Q 001722 542 EIEAACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAETSLTVDGIFYVIDTGYG 621 (1020)
Q Consensus 542 eie~l~~~L~e~l~~l~~~~~~~~~~l~vl~lhs~L~~~eq~~I~~~f~~g~rkVIVATniaEtGItIp~V~~VID~G~~ 621 (1020)
+|+.+...|... .+...++|+||+..+|..|...|-.++.+|||||=.+.+|||.|||++||+.+
T Consensus 497 ~ce~vs~~L~~~-------------~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~DVR~ViH~~-- 561 (941)
T KOG0351|consen 497 ECEQVSAVLRSL-------------GKSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGIDKPDVRFVIHYS-- 561 (941)
T ss_pred hHHHHHHHHHHh-------------chhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCCCceeEEEECC--
Confidence 999999988753 46678899999999999999999999999999999999999999999999966
Q ss_pred cceeccCCCCcccccccccCHHHHHHHhcccCCCC-CCEEEEccChhhH
Q 001722 622 KMKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTG-PGTCYRLYTESAY 669 (1020)
Q Consensus 622 K~~~yd~~~g~~~L~~~piS~as~~QRaGRAGR~g-~G~cyrLyt~~~~ 669 (1020)
.|-|...|.|-+|||||.| +-.|..+|+-.++
T Consensus 562 ----------------lPks~E~YYQE~GRAGRDG~~s~C~l~y~~~D~ 594 (941)
T KOG0351|consen 562 ----------------LPKSFEGYYQEAGRAGRDGLPSSCVLLYGYADI 594 (941)
T ss_pred ----------------CchhHHHHHHhccccCcCCCcceeEEecchhHH
Confidence 5999999999999999999 7999999998776
No 89
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.89 E-value=2.8e-22 Score=238.55 Aligned_cols=296 Identities=17% Similarity=0.195 Sum_probs=184.8
Q ss_pred EEEecCCCchHHHHHHHHHHhcccCCCEEEEEcccHHHHHHHHHHHHHHhccccCCEEEEEEeee----------ecCCC
Q 001722 342 VVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELGDKVGYAIRFE----------DVTGP 411 (1020)
Q Consensus 342 II~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~lA~qva~rva~e~~~~lG~~VGy~ir~e----------~~~s~ 411 (1020)
+|.|+||||||.++...+.+. +..+++++++.|+++|+.|+++++.+.++.. +..-.... .....
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~-l~~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~----v~vlhs~~~~~er~~~~~~~~~g 75 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKV-LALGKSVLVLVPEIALTPQMIQRFKYRFGSQ----VAVLHSGLSDSEKLQAWRKVKNG 75 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHH-HHcCCeEEEEeCcHHHHHHHHHHHHHHhCCc----EEEEECCCCHHHHHHHHHHHHcC
Confidence 478999999999987665443 4446789999999999999999998766533 22111100 11223
Q ss_pred CccEEEEchHHHHHHHhcCCCCCCccEEEEeCCCcCCCCccHHH----HHHHHHHhhcCCceEEEEeccCCHHHHHHHhC
Q 001722 412 STLIKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLF----GILKKVVARRRDFKLIVTSATLNAQKFSDFFG 487 (1020)
Q Consensus 412 ~t~I~~~T~g~LLr~ll~d~~L~~~s~IIIDEaHERs~~tD~ll----~lLk~il~~r~~lklIlmSATld~~~f~~~f~ 487 (1020)
..+|+++|...+.. .+.++++|||||+|+-+...+-.. .-+........+.++|++|||+..+.+.....
T Consensus 76 ~~~IVVGTrsalf~------p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~~~~~~vil~SATPsles~~~~~~ 149 (505)
T TIGR00595 76 EILVVIGTRSALFL------PFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAKKFNCPVVLGSATPSLESYHNAKQ 149 (505)
T ss_pred CCCEEECChHHHcC------cccCCCEEEEECCCccccccccCCCCcHHHHHHHHHHhcCCCEEEEeCCCCHHHHHHHhc
Confidence 56899999886631 377899999999997554433111 00122233456889999999999888877654
Q ss_pred CC-CeEeec----Ccccce-eeeecCCCc-hhHHHHHHHHHHHHhhcCCCCCEEEEcCCHHH------------------
Q 001722 488 SV-PIFHIP----GRTFPV-NTLYSKTPC-EDYVEAAVKQAMTIHITSPPGDILIFMTGQDE------------------ 542 (1020)
Q Consensus 488 ~~-pvi~i~----gr~~pV-~i~y~~~~~-~dyl~~av~~~l~i~~~~~~g~ILVFl~g~~e------------------ 542 (1020)
+. ..+.++ ++..|. .+.-..... ...+...+...+...+ ..++++|||+|.+.-
T Consensus 150 g~~~~~~l~~r~~~~~~p~v~vid~~~~~~~~~ls~~l~~~i~~~l-~~g~qvLvflnrrGya~~~~C~~Cg~~~~C~~C 228 (505)
T TIGR00595 150 KAYRLLVLTRRVSGRKPPEVKLIDMRKEPRQSFLSPELITAIEQTL-AAGEQSILFLNRRGYSKNLLCRSCGYILCCPNC 228 (505)
T ss_pred CCeEEeechhhhcCCCCCeEEEEecccccccCCccHHHHHHHHHHH-HcCCcEEEEEeCCcCCCeeEhhhCcCccCCCCC
Confidence 32 223332 222332 222111110 0111111112221111 235689999776542
Q ss_pred ------------------------------------------HHHHHHHHHHHHHHhhccccCCCCCeEEEEecCCCCHH
Q 001722 543 ------------------------------------------IEAACFALKERMEQLISSTTREVPELLILPIYSQLPAD 580 (1020)
Q Consensus 543 ------------------------------------------ie~l~~~L~e~l~~l~~~~~~~~~~l~vl~lhs~L~~~ 580 (1020)
++.+.+.|.+ ..|+..|..+|++++..
T Consensus 229 ~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~-----------~fp~~~v~~~d~d~~~~ 297 (505)
T TIGR00595 229 DVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQVEEELAK-----------LFPGARIARIDSDTTSR 297 (505)
T ss_pred CCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHHHHHHHh-----------hCCCCcEEEEecccccC
Confidence 2333333332 24678899999999876
Q ss_pred HH--HHHHHHhcCCCeEEEEecchhhccCCCCCeeEEEEcCCccceeccCCCCcccccccccCHHHHHHHhcccCCCC-C
Q 001722 581 LQ--AKIFEKAKEGTRKCIVATNIAETSLTVDGIFYVIDTGYGKMKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTG-P 657 (1020)
Q Consensus 581 eq--~~I~~~f~~g~rkVIVATniaEtGItIp~V~~VID~G~~K~~~yd~~~g~~~L~~~piS~as~~QRaGRAGR~g-~ 657 (1020)
.. ..+++.|.+|..+|||+|++++.|+|+|+|+.|+-.+ +|.......+...--....+.|++|||||.+ +
T Consensus 298 ~~~~~~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~------aD~~l~~pd~ra~E~~~~ll~q~~GRagR~~~~ 371 (505)
T TIGR00595 298 KGAHEALLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLD------ADSGLHSPDFRAAERGFQLLTQVAGRAGRAEDP 371 (505)
T ss_pred ccHHHHHHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEc------CcccccCcccchHHHHHHHHHHHHhccCCCCCC
Confidence 55 8899999999999999999999999999999885211 3322221111111223567899999999977 5
Q ss_pred CEEE-EccCh
Q 001722 658 GTCY-RLYTE 666 (1020)
Q Consensus 658 G~cy-rLyt~ 666 (1020)
|.++ ..|.+
T Consensus 372 g~viiqt~~p 381 (505)
T TIGR00595 372 GQVIIQTYNP 381 (505)
T ss_pred CEEEEEeCCC
Confidence 8887 33443
No 90
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.88 E-value=1.9e-21 Score=248.99 Aligned_cols=280 Identities=16% Similarity=0.141 Sum_probs=180.5
Q ss_pred HHHcCCCcHHHHHHHHHHHHhCCeEEEEecCCCchHHHHHHHHHHhcccCCCEEEEEcccHHHHHHHHHHHHHHhccccC
Q 001722 317 EQRQYLPIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELG 396 (1020)
Q Consensus 317 ~~R~~LPi~~~q~eil~~i~~~q~vII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~lA~qva~rva~e~~~~lG 396 (1020)
........+++|...+..+..|++++++||||||||+.+ .++.......+.+++++.|+|+||.|++..+.... ...|
T Consensus 72 ~~~~g~~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~f~-l~~~~~l~~~g~~vLIL~PTreLa~Qi~~~l~~l~-~~~~ 149 (1171)
T TIGR01054 72 KKAVGSEPWSIQKMWAKRVLRGDSFAIIAPTGVGKTTFG-LAMSLFLAKKGKRCYIILPTTLLVIQVAEKISSLA-EKAG 149 (1171)
T ss_pred HHhcCCCCcHHHHHHHHHHhCCCeEEEECCCCCCHHHHH-HHHHHHHHhcCCeEEEEeCHHHHHHHHHHHHHHHH-HhcC
Confidence 334556789999999999999999999999999999843 33333222346789999999999999999885543 3333
Q ss_pred CE---EEEEEeeee----------cCCCCccEEEEchHHHHHHHhcCCCCCCccEEEEeCCCcCC---CCccHHHH----
Q 001722 397 DK---VGYAIRFED----------VTGPSTLIKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERS---LSTDVLFG---- 456 (1020)
Q Consensus 397 ~~---VGy~ir~e~----------~~s~~t~I~~~T~g~LLr~ll~d~~L~~~s~IIIDEaHERs---~~tD~ll~---- 456 (1020)
.. +|+-..... ......+|+++|+|.|.+.+..-. .++++|||||||.-. -+.|-++.
T Consensus 150 i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l~--~~~~~iVvDEaD~~L~~~k~vd~il~llGF 227 (1171)
T TIGR01054 150 VGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDELG--PKFDFIFVDDVDALLKASKNVDKLLKLLGF 227 (1171)
T ss_pred CceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHhc--CCCCEEEEeChHhhhhccccHHHHHHHcCC
Confidence 11 221111100 112347899999999987654311 189999999999421 11121111
Q ss_pred ---HHHHH----------------------Hhh-cCC--ceEEEEeccCCHHHHH-HHhCCCCeEeecCcc---cceeee
Q 001722 457 ---ILKKV----------------------VAR-RRD--FKLIVTSATLNAQKFS-DFFGSVPIFHIPGRT---FPVNTL 504 (1020)
Q Consensus 457 ---lLk~i----------------------l~~-r~~--lklIlmSATld~~~f~-~~f~~~pvi~i~gr~---~pV~i~ 504 (1020)
.+..+ +.. ... ..++++|||+.+.... .+|...-.+.+.... ..+...
T Consensus 228 ~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~~~l~r~ll~~~v~~~~~~~r~I~~~ 307 (1171)
T TIGR01054 228 SEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKRAKLFRELLGFEVGGGSDTLRNVVDV 307 (1171)
T ss_pred CHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccHHHHcccccceEecCccccccceEEE
Confidence 01111 111 122 2367889995322222 334332223333222 124444
Q ss_pred ecCCCchhHHHHHHHHHHHHhhcCCCCCEEEEcCCH---HHHHHHHHHHHHHHHHhhccccCCCCCeEEEEecCCCCHHH
Q 001722 505 YSKTPCEDYVEAAVKQAMTIHITSPPGDILIFMTGQ---DEIEAACFALKERMEQLISSTTREVPELLILPIYSQLPADL 581 (1020)
Q Consensus 505 y~~~~~~dyl~~av~~~l~i~~~~~~g~ILVFl~g~---~eie~l~~~L~e~l~~l~~~~~~~~~~l~vl~lhs~L~~~e 581 (1020)
|..... .. ..+..++.. .++.+||||++. +.++.++..|.+ .++.+..+||+++.
T Consensus 308 ~~~~~~--~~-~~L~~ll~~----l~~~~IVFv~t~~~~~~a~~l~~~L~~-------------~g~~a~~lhg~~~~-- 365 (1171)
T TIGR01054 308 YVEDED--LK-ETLLEIVKK----LGTGGIVYVSIDYGKEKAEEIAEFLEN-------------HGVKAVAYHATKPK-- 365 (1171)
T ss_pred EEeccc--HH-HHHHHHHHH----cCCCEEEEEeccccHHHHHHHHHHHHh-------------CCceEEEEeCCCCH--
Confidence 433221 11 122222221 145789999998 888888888764 26789999999973
Q ss_pred HHHHHHHhcCCCeEEEEe----cchhhccCCCCC-eeEEEEcCCccce
Q 001722 582 QAKIFEKAKEGTRKCIVA----TNIAETSLTVDG-IFYVIDTGYGKMK 624 (1020)
Q Consensus 582 q~~I~~~f~~g~rkVIVA----TniaEtGItIp~-V~~VID~G~~K~~ 624 (1020)
.+++.|.+|..+|||| |+++++|||||+ |+|||++|..+.+
T Consensus 366 --~~l~~Fr~G~~~vLVata~~tdv~aRGIDip~~V~~vI~~~~P~~~ 411 (1171)
T TIGR01054 366 --EDYEKFAEGEIDVLIGVASYYGTLVRGLDLPERVRYAVFLGVPKFK 411 (1171)
T ss_pred --HHHHHHHcCCCCEEEEeccccCcccccCCCCccccEEEEECCCCEE
Confidence 6889999999999999 599999999999 8999999987764
No 91
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.88 E-value=3.5e-21 Score=232.17 Aligned_cols=310 Identities=20% Similarity=0.193 Sum_probs=202.1
Q ss_pred HcCCCcHHHHHHHHHHHHhCCeEEEEecCCCchHHHHHHHHHHhcccCCCEEEEEcccHHHHHHHHHHHHHHhccccCCE
Q 001722 319 RQYLPIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELGDK 398 (1020)
Q Consensus 319 R~~LPi~~~q~eil~~i~~~q~vII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~lA~qva~rva~e~~~~lG~~ 398 (1020)
++.|-++++.-+++-.+.-++..|..++||+|||+++..+++-..+. +..+.++.|++.||.+.++.+... ...+|..
T Consensus 50 ~R~lg~~p~~vQlig~~~l~~G~Iaem~TGeGKTLva~lpa~l~aL~-G~~V~VvTpt~~LA~qdae~~~~l-~~~LGLs 127 (745)
T TIGR00963 50 KRVLGMRPFDVQLIGGIALHKGKIAEMKTGEGKTLTATLPAYLNALT-GKGVHVVTVNDYLAQRDAEWMGQV-YRFLGLS 127 (745)
T ss_pred HHHhCCCccchHHhhhhhhcCCceeeecCCCccHHHHHHHHHHHHHh-CCCEEEEcCCHHHHHHHHHHHHHH-hccCCCe
Confidence 44455555555555555555555999999999999987777543333 446889999999999999988554 4557888
Q ss_pred EEEEEeeee----cCCCCccEEEEchHHH-HHHHhcC-------CCCCCccEEEEeCCCcCCC--------------Ccc
Q 001722 399 VGYAIRFED----VTGPSTLIKYMTDGVL-LRETLKD-------SDLDKYRVIVMDEAHERSL--------------STD 452 (1020)
Q Consensus 399 VGy~ir~e~----~~s~~t~I~~~T~g~L-Lr~ll~d-------~~L~~~s~IIIDEaHERs~--------------~tD 452 (1020)
||..+...+ ...-.++|+|+|++.| +..+... ..+.++.++||||+|.-.+ ..+
T Consensus 128 v~~i~g~~~~~~r~~~y~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LIDeaRtpLiisg~~~~~~ 207 (745)
T TIGR00963 128 VGLILSGMSPEERREAYACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILIDEARTPLIISGPAEKST 207 (745)
T ss_pred EEEEeCCCCHHHHHHhcCCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHhHHhhhhHHhhcCCCCCch
Confidence 876544322 1122468999999988 4443322 2478899999999993111 111
Q ss_pred HHHHHHHHHHhh-cC--------C--------------------------------------------------------
Q 001722 453 VLFGILKKVVAR-RR--------D-------------------------------------------------------- 467 (1020)
Q Consensus 453 ~ll~lLk~il~~-r~--------~-------------------------------------------------------- 467 (1020)
.+......+... .. +
T Consensus 208 ~ly~~a~~i~r~L~~~~dy~~de~~k~v~Lt~~G~~~~e~~~~~~~ly~~~~~~~~~~i~~Al~A~~l~~~d~dYiV~d~ 287 (745)
T TIGR00963 208 ELYLQANRFAKALEKEVHYEVDEKNRAVLLTEKGIKKAEDLLGVDNLYDLENSPLIHYINNALKAKELFEKDVDYIVRDG 287 (745)
T ss_pred HHHHHHHHHHHhhccCCCeEEecCCCceeECHHHHHHHHHHcCCccccChhhhHHHHHHHHHHHHHHHHhcCCcEEEECC
Confidence 111111111110 00 0
Q ss_pred -----------------------------------------------------ceEEEEeccC--CHHHHHHHhCCCCeE
Q 001722 468 -----------------------------------------------------FKLIVTSATL--NAQKFSDFFGSVPIF 492 (1020)
Q Consensus 468 -----------------------------------------------------lklIlmSATl--d~~~f~~~f~~~pvi 492 (1020)
.++.+||.|. ..+.|.+.++ .+++
T Consensus 288 ~V~ivD~~TGR~~~gr~ws~GLhQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~iY~-l~vv 366 (745)
T TIGR00963 288 EVVIVDEFTGRIMEGRRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFRLYEKLSGMTGTAKTEEEEFEKIYN-LEVV 366 (745)
T ss_pred EEEEEECCCCcCCCCCccchHHHHHHHHhcCCCcCCCceeeeeeeHHHHHhhCchhhccCCCcHHHHHHHHHHhC-CCEE
Confidence 1233333333 1222222222 2333
Q ss_pred eecCccccee------eeecCCCchhHHHHHHHHHHHHhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHHHhhccccCCCC
Q 001722 493 HIPGRTFPVN------TLYSKTPCEDYVEAAVKQAMTIHITSPPGDILIFMTGQDEIEAACFALKERMEQLISSTTREVP 566 (1020)
Q Consensus 493 ~i~gr~~pV~------i~y~~~~~~dyl~~av~~~l~i~~~~~~g~ILVFl~g~~eie~l~~~L~e~l~~l~~~~~~~~~ 566 (1020)
.||... |+. ..|. ...+...+.+..+...| ..+.++||||++.+.++.++..|.+.
T Consensus 367 ~IPtnk-p~~R~d~~d~i~~--t~~~k~~ai~~~i~~~~--~~grpvLV~t~si~~se~ls~~L~~~------------- 428 (745)
T TIGR00963 367 VVPTNR-PVIRKDLSDLVYK--TEEEKWKAVVDEIKERH--AKGQPVLVGTTSVEKSELLSNLLKER------------- 428 (745)
T ss_pred EeCCCC-CeeeeeCCCeEEc--CHHHHHHHHHHHHHHHH--hcCCCEEEEeCcHHHHHHHHHHHHHc-------------
Confidence 343221 110 0111 11223344455555555 34778999999999999999888753
Q ss_pred CeEEEEecCCCCHHHHHHHHHHhcCCCeEEEEecchhhccCCCCC-------eeEEEEcCCccceeccCCCCcccccccc
Q 001722 567 ELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAETSLTVDG-------IFYVIDTGYGKMKVYNPKMGMDALQVFP 639 (1020)
Q Consensus 567 ~l~vl~lhs~L~~~eq~~I~~~f~~g~rkVIVATniaEtGItIp~-------V~~VID~G~~K~~~yd~~~g~~~L~~~p 639 (1020)
++....+|+. ..+|...+..+..+...|+||||+|++|+||+. ..+||.+. .|
T Consensus 429 gi~~~~Lna~--q~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~------------------~p 488 (745)
T TIGR00963 429 GIPHNVLNAK--NHEREAEIIAQAGRKGAVTIATNMAGRGTDIKLEEVKELGGLYVIGTE------------------RH 488 (745)
T ss_pred CCCeEEeeCC--hHHHHHHHHHhcCCCceEEEEeccccCCcCCCccchhhcCCcEEEecC------------------CC
Confidence 5667789998 778888888999999999999999999999998 45999743 69
Q ss_pred cCHHHHHHHhcccCCCC-CCEEEEccChhhH
Q 001722 640 VSRAAADQRAGRAGRTG-PGTCYRLYTESAY 669 (1020)
Q Consensus 640 iS~as~~QRaGRAGR~g-~G~cyrLyt~~~~ 669 (1020)
.|...+.||+|||||.| ||.+..+.+.++.
T Consensus 489 ~s~ri~~q~~GRtGRqG~~G~s~~~ls~eD~ 519 (745)
T TIGR00963 489 ESRRIDNQLRGRSGRQGDPGSSRFFLSLEDN 519 (745)
T ss_pred CcHHHHHHHhccccCCCCCcceEEEEeccHH
Confidence 99999999999999999 6999988887653
No 92
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.88 E-value=1.1e-20 Score=204.53 Aligned_cols=295 Identities=21% Similarity=0.298 Sum_probs=209.4
Q ss_pred HHHHHHHHhCCeEEEEecCCCchHHHHHHHHHHhcccCCCEEEEEcccHHHHHHHHHHHHHHhc-cccCCEEEEEEeeee
Q 001722 329 DELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMD-TELGDKVGYAIRFED 407 (1020)
Q Consensus 329 ~eil~~i~~~q~vII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~lA~qva~rva~e~~-~~lG~~VGy~ir~e~ 407 (1020)
.++++.+.+.+.++|.|-||+|||..+.+-+. ..+..+++|.+..||...+.+++.|+.+.+. +.+... | .++
T Consensus 107 ~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~-~al~~G~~vciASPRvDVclEl~~Rlk~aF~~~~I~~L--y---g~S 180 (441)
T COG4098 107 NQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIE-QALNQGGRVCIASPRVDVCLELYPRLKQAFSNCDIDLL--Y---GDS 180 (441)
T ss_pred HHHHHHHHhcCcEEEEEecCCCchhhhHHHHH-HHHhcCCeEEEecCcccchHHHHHHHHHhhccCCeeeE--e---cCC
Confidence 45788889999999999999999998776544 3455688999999999999999999998876 432211 1 222
Q ss_pred cCCCCccEEEEchHHHHHHHhcCCCCCCccEEEEeCCCcCCCCccHHHHH-HHHHHhhcCCceEEEEeccCCHHHHHHHh
Q 001722 408 VTGPSTLIKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGI-LKKVVARRRDFKLIVTSATLNAQKFSDFF 486 (1020)
Q Consensus 408 ~~s~~t~I~~~T~g~LLr~ll~d~~L~~~s~IIIDEaHERs~~tD~ll~l-Lk~il~~r~~lklIlmSATld~~~f~~~f 486 (1020)
..--.+.++++|+..|+|.- ..++++||||++-.....|..+.+ ++.. +.+.--+|.||||..-+.-.+..
T Consensus 181 ~~~fr~plvVaTtHQLlrFk------~aFD~liIDEVDAFP~~~d~~L~~Av~~a--rk~~g~~IylTATp~k~l~r~~~ 252 (441)
T COG4098 181 DSYFRAPLVVATTHQLLRFK------QAFDLLIIDEVDAFPFSDDQSLQYAVKKA--RKKEGATIYLTATPTKKLERKIL 252 (441)
T ss_pred chhccccEEEEehHHHHHHH------hhccEEEEeccccccccCCHHHHHHHHHh--hcccCceEEEecCChHHHHHHhh
Confidence 22234889999999999863 467999999999877777755444 3332 33456789999999655444444
Q ss_pred C-CCCeEeecCcc----cceeeeecCCCchhHHH-----HHHHHHHHHhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHHH
Q 001722 487 G-SVPIFHIPGRT----FPVNTLYSKTPCEDYVE-----AAVKQAMTIHITSPPGDILIFMTGQDEIEAACFALKERMEQ 556 (1020)
Q Consensus 487 ~-~~pvi~i~gr~----~pV~i~y~~~~~~dyl~-----~av~~~l~i~~~~~~g~ILVFl~g~~eie~l~~~L~e~l~~ 556 (1020)
. +...+.+|.|- .|+.-+.-..+...++. ..+...+..+.. .+.++|||+|+.+-.+.++..|.+.
T Consensus 253 ~g~~~~~klp~RfH~~pLpvPkf~w~~~~~k~l~r~kl~~kl~~~lekq~~-~~~P~liF~p~I~~~eq~a~~lk~~--- 328 (441)
T COG4098 253 KGNLRILKLPARFHGKPLPVPKFVWIGNWNKKLQRNKLPLKLKRWLEKQRK-TGRPVLIFFPEIETMEQVAAALKKK--- 328 (441)
T ss_pred hCCeeEeecchhhcCCCCCCCceEEeccHHHHhhhccCCHHHHHHHHHHHh-cCCcEEEEecchHHHHHHHHHHHhh---
Confidence 3 33446666443 34433322223333332 244445544433 3578999999999999999988654
Q ss_pred hhccccCCCCCeEEEEecCCCCHHHHHHHHHHhcCCCeEEEEecchhhccCCCCCeeEEEEcCCccceeccCCCCccccc
Q 001722 557 LISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAETSLTVDGIFYVIDTGYGKMKVYNPKMGMDALQ 636 (1020)
Q Consensus 557 l~~~~~~~~~~l~vl~lhs~L~~~eq~~I~~~f~~g~rkVIVATniaEtGItIp~V~~VID~G~~K~~~yd~~~g~~~L~ 636 (1020)
.+...+..+||.- ..|.+..+.|++|+.++||+|.|+|+|+|+|+|+++| .++..
T Consensus 329 --------~~~~~i~~Vhs~d--~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~V---------lgaeh------ 383 (441)
T COG4098 329 --------LPKETIASVHSED--QHRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFV---------LGAEH------ 383 (441)
T ss_pred --------CCccceeeeeccC--ccHHHHHHHHHcCceEEEEEeehhhcccccccceEEE---------ecCCc------
Confidence 3566778888864 3567788899999999999999999999999999877 22211
Q ss_pred ccccCHHHHHHHhcccCCCC--C-C-EEEEccChh
Q 001722 637 VFPVSRAAADQRAGRAGRTG--P-G-TCYRLYTES 667 (1020)
Q Consensus 637 ~~piS~as~~QRaGRAGR~g--~-G-~cyrLyt~~ 667 (1020)
.-.+.++.+|.+||+||.- | | .||--|...
T Consensus 384 -~vfTesaLVQIaGRvGRs~~~PtGdv~FFH~G~s 417 (441)
T COG4098 384 -RVFTESALVQIAGRVGRSLERPTGDVLFFHYGKS 417 (441)
T ss_pred -ccccHHHHHHHhhhccCCCcCCCCcEEEEeccch
Confidence 2357889999999999965 4 5 455555543
No 93
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.87 E-value=3.6e-21 Score=230.40 Aligned_cols=331 Identities=20% Similarity=0.240 Sum_probs=226.8
Q ss_pred HcCCCcHHHHHHHH--HHHHhCCeEEEEecCCCchHHHHHHHHHHhcccCCCEEEEEcccHHHHHHHHHHHHHHhccccC
Q 001722 319 RQYLPIFSVRDELL--QVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELG 396 (1020)
Q Consensus 319 R~~LPi~~~q~eil--~~i~~~q~vII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~lA~qva~rva~e~~~~lG 396 (1020)
...+..|.+|.+.+ ..+++++++|...||+.|||.+....++...+.....++.+.|....+..-...++. +.+.+|
T Consensus 219 kgi~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~rr~~llilp~vsiv~Ek~~~l~~-~~~~~G 297 (1008)
T KOG0950|consen 219 KGILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCRRRNVLLILPYVSIVQEKISALSP-FSIDLG 297 (1008)
T ss_pred hhHHHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHHHhhceeEecceeehhHHHHhhhhh-hccccC
Confidence 45566888999886 456789999999999999999998888887766667788888887777766666633 345555
Q ss_pred CEE-EEEEeeeecC-CCCccEEEEchHH---HHHHHhcCCCCCCccEEEEeCCC-----cCCCCccHHHHHHHHHHh--h
Q 001722 397 DKV-GYAIRFEDVT-GPSTLIKYMTDGV---LLRETLKDSDLDKYRVIVMDEAH-----ERSLSTDVLFGILKKVVA--R 464 (1020)
Q Consensus 397 ~~V-Gy~ir~e~~~-s~~t~I~~~T~g~---LLr~ll~d~~L~~~s~IIIDEaH-----ERs~~tD~ll~lLk~il~--~ 464 (1020)
..| +|.-++.... -....+.+||.++ |.+.++....+..++.|||||.| +|+...+ .+|.+++- .
T Consensus 298 ~~ve~y~g~~~p~~~~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~d~~rg~~lE---~~l~k~~y~~~ 374 (1008)
T KOG0950|consen 298 FPVEEYAGRFPPEKRRKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIGDKGRGAILE---LLLAKILYENL 374 (1008)
T ss_pred CcchhhcccCCCCCcccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeeeccccchHHH---HHHHHHHHhcc
Confidence 444 3442322221 2346788999874 66777777788999999999999 3554433 33444432 2
Q ss_pred cCCceEEEEeccC-CHHHHHHHhCCCCeEeecCcccceeeeecCCCch-hH-HHHHHHHHHH-----------------H
Q 001722 465 RRDFKLIVTSATL-NAQKFSDFFGSVPIFHIPGRTFPVNTLYSKTPCE-DY-VEAAVKQAMT-----------------I 524 (1020)
Q Consensus 465 r~~lklIlmSATl-d~~~f~~~f~~~pvi~i~gr~~pV~i~y~~~~~~-dy-l~~av~~~l~-----------------i 524 (1020)
...+++|+||||+ |...+++||+ +-++...-|..|...+....+.. +. -...+..+-. .
T Consensus 375 ~~~~~iIGMSATi~N~~lL~~~L~-A~~y~t~fRPv~L~E~ik~G~~i~~~~r~~~lr~ia~l~~~~~g~~dpD~~v~L~ 453 (1008)
T KOG0950|consen 375 ETSVQIIGMSATIPNNSLLQDWLD-AFVYTTRFRPVPLKEYIKPGSLIYESSRNKVLREIANLYSSNLGDEDPDHLVGLC 453 (1008)
T ss_pred ccceeEeeeecccCChHHHHHHhh-hhheecccCcccchhccCCCcccccchhhHHHHHhhhhhhhhcccCCCcceeeeh
Confidence 3347899999999 8999999997 44444444444433322111100 00 0001111110 0
Q ss_pred hhcCCCC-CEEEEcCCHHHHHHHHHHHHHHHHHhhc-------------------------cccCCCCCeEEEEecCCCC
Q 001722 525 HITSPPG-DILIFMTGQDEIEAACFALKERMEQLIS-------------------------STTREVPELLILPIYSQLP 578 (1020)
Q Consensus 525 ~~~~~~g-~ILVFl~g~~eie~l~~~L~e~l~~l~~-------------------------~~~~~~~~l~vl~lhs~L~ 578 (1020)
...-+.| .+|||||++..|+.++..+...+.+... ......-...+..+|+|++
T Consensus 454 tet~~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~~~~ld~Vl~~ti~~GvAyHhaGLT 533 (1008)
T KOG0950|consen 454 TETAPEGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRIPGILDPVLAKTIPYGVAYHHAGLT 533 (1008)
T ss_pred hhhhhcCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcCCcccchHHheeccccceecccccc
Confidence 0011233 4999999999999998766543322100 0001123456889999999
Q ss_pred HHHHHHHHHHhcCCCeEEEEecchhhccCCCCCeeEEEEcCCccceeccCCCCcccccccccCHHHHHHHhcccCCCC--
Q 001722 579 ADLQAKIFEKAKEGTRKCIVATNIAETSLTVDGIFYVIDTGYGKMKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTG-- 656 (1020)
Q Consensus 579 ~~eq~~I~~~f~~g~rkVIVATniaEtGItIp~V~~VID~G~~K~~~yd~~~g~~~L~~~piS~as~~QRaGRAGR~g-- 656 (1020)
.++|+.|...|+.|...|++||+++..|++.|..+++|-.-++ | ....+...|.||+|||||+|
T Consensus 534 ~eER~~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIiraP~~---------g-----~~~l~~~~YkQM~GRAGR~gid 599 (1008)
T KOG0950|consen 534 SEEREIIEAAFREGNIFVLVATSTLAAGVNLPARRVIIRAPYV---------G-----REFLTRLEYKQMVGRAGRTGID 599 (1008)
T ss_pred cchHHHHHHHHHhcCeEEEEecchhhccCcCCcceeEEeCCcc---------c-----cchhhhhhHHhhhhhhhhcccc
Confidence 9999999999999999999999999999999999999964332 2 24678889999999999999
Q ss_pred -CCEEEEccChhh
Q 001722 657 -PGTCYRLYTESA 668 (1020)
Q Consensus 657 -~G~cyrLyt~~~ 668 (1020)
-|.++.++.+.+
T Consensus 600 T~GdsiLI~k~~e 612 (1008)
T KOG0950|consen 600 TLGDSILIIKSSE 612 (1008)
T ss_pred cCcceEEEeeccc
Confidence 499999998765
No 94
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.86 E-value=6.3e-20 Score=215.65 Aligned_cols=292 Identities=18% Similarity=0.207 Sum_probs=198.4
Q ss_pred HHcCCCcHHHHHHHHHHHHh----CCeEEEEecCCCchHHHHHHHHHHhcccCCCEEEEEcccHHHHHHHHHHHHHHhcc
Q 001722 318 QRQYLPIFSVRDELLQVIRE----NQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDT 393 (1020)
Q Consensus 318 ~R~~LPi~~~q~eil~~i~~----~q~vII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~lA~qva~rva~e~~~ 393 (1020)
......+.++|+++++++.. ++..+|+.|||+|||..+...+.+.. ..++|++|+++|+.|.++++...++.
T Consensus 31 ~~~~~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~~----~~~Lvlv~~~~L~~Qw~~~~~~~~~~ 106 (442)
T COG1061 31 VAFEFELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAELK----RSTLVLVPTKELLDQWAEALKKFLLL 106 (442)
T ss_pred cccCCCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHhc----CCEEEEECcHHHHHHHHHHHHHhcCC
Confidence 44566689999999999998 89999999999999999877766543 34999999999999999888766553
Q ss_pred ccCCEEEEEEeeeecCCCCccEEEEchHHHHHH-HhcCCCCCCccEEEEeCCCcCCCCccHHHHHHHHHHhhcCCce-EE
Q 001722 394 ELGDKVGYAIRFEDVTGPSTLIKYMTDGVLLRE-TLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFK-LI 471 (1020)
Q Consensus 394 ~lG~~VGy~ir~e~~~s~~t~I~~~T~g~LLr~-ll~d~~L~~~s~IIIDEaHERs~~tD~ll~lLk~il~~r~~lk-lI 471 (1020)
. ..+|..-.......+ ..|.|.|...+.+. .+......++++||+||||+-+.... +.+........ ++
T Consensus 107 ~--~~~g~~~~~~~~~~~-~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a~~~------~~~~~~~~~~~~~L 177 (442)
T COG1061 107 N--DEIGIYGGGEKELEP-AKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPAPSY------RRILELLSAAYPRL 177 (442)
T ss_pred c--cccceecCceeccCC-CcEEEEEhHHHhhhhhhhhhcccccCEEEEEccccCCcHHH------HHHHHhhhccccee
Confidence 3 233321111111112 56999999999886 33334445799999999996443322 22222223334 99
Q ss_pred EEeccC---CHHH---HHHHhCCCCeEeec-------CcccceeeeecCC-----CchhHHH------------------
Q 001722 472 VTSATL---NAQK---FSDFFGSVPIFHIP-------GRTFPVNTLYSKT-----PCEDYVE------------------ 515 (1020)
Q Consensus 472 lmSATl---d~~~---f~~~f~~~pvi~i~-------gr~~pV~i~y~~~-----~~~dyl~------------------ 515 (1020)
++|||+ |... +..+++ ..++.++ |-.-|........ ....|..
T Consensus 178 GLTATp~R~D~~~~~~l~~~~g-~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (442)
T COG1061 178 GLTATPEREDGGRIGDLFDLIG-PIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLRARGTLRAE 256 (442)
T ss_pred eeccCceeecCCchhHHHHhcC-CeEeecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhhhhhhhhhHH
Confidence 999997 3223 333333 1233332 2223332221111 0000000
Q ss_pred ---H-----------HHHHHHHHhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHHHhhccccCCCCCeEEEEecCCCCHHH
Q 001722 516 ---A-----------AVKQAMTIHITSPPGDILIFMTGQDEIEAACFALKERMEQLISSTTREVPELLILPIYSQLPADL 581 (1020)
Q Consensus 516 ---~-----------av~~~l~i~~~~~~g~ILVFl~g~~eie~l~~~L~e~l~~l~~~~~~~~~~l~vl~lhs~L~~~e 581 (1020)
. .+...+..|. ...++|||+....+++.++..+.. ++. +..+.+..+..+
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~lif~~~~~~a~~i~~~~~~-------------~~~-~~~it~~t~~~e 320 (442)
T COG1061 257 NEARRIAIASERKIAAVRGLLLKHA--RGDKTLIFASDVEHAYEIAKLFLA-------------PGI-VEAITGETPKEE 320 (442)
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhc--CCCcEEEEeccHHHHHHHHHHhcC-------------CCc-eEEEECCCCHHH
Confidence 0 0111111121 356899999999999988876632 233 788999999999
Q ss_pred HHHHHHHhcCCCeEEEEecchhhccCCCCCeeEEEEcCCccceeccCCCCcccccccccCHHHHHHHhcccCCCCC
Q 001722 582 QAKIFEKAKEGTRKCIVATNIAETSLTVDGIFYVIDTGYGKMKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTGP 657 (1020)
Q Consensus 582 q~~I~~~f~~g~rkVIVATniaEtGItIp~V~~VID~G~~K~~~yd~~~g~~~L~~~piS~as~~QRaGRAGR~g~ 657 (1020)
|..+++.|+.|.+++||++.++..|+|+|++.++|-.. ..-|...|.||+||.=|..+
T Consensus 321 R~~il~~fr~g~~~~lv~~~vl~EGvDiP~~~~~i~~~------------------~t~S~~~~~Q~lGR~LR~~~ 378 (442)
T COG1061 321 REAILERFRTGGIKVLVTVKVLDEGVDIPDADVLIILR------------------PTGSRRLFIQRLGRGLRPAE 378 (442)
T ss_pred HHHHHHHHHcCCCCEEEEeeeccceecCCCCcEEEEeC------------------CCCcHHHHHHHhhhhccCCC
Confidence 99999999998999999999999999999999999522 36788999999999999443
No 95
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.86 E-value=1.7e-19 Score=229.90 Aligned_cols=314 Identities=19% Similarity=0.282 Sum_probs=200.8
Q ss_pred CCcHHHHHHHHHHHH-----hCCeEEEEecCCCchHHHHHHHHHHhcc-cCCCEEEEEcccHHHHHHHHHHHHHHhcccc
Q 001722 322 LPIFSVRDELLQVIR-----ENQVVVVVGETGSGKTTQLTQYLLEDGY-TTNGIVGCTQPRRVAAMSVAKRVSEEMDTEL 395 (1020)
Q Consensus 322 LPi~~~q~eil~~i~-----~~q~vII~gpTGSGKTtqi~q~Lle~~~-~~~~~Il~tqPrR~lA~qva~rva~e~~~~l 395 (1020)
+.+..+|.++++.+. .++..+|+++||||||..+...+..... ...++|++++||++|+.|....+... +...
T Consensus 412 ~~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~li~~L~~~~~~~rVLfLvDR~~L~~Qa~~~F~~~-~~~~ 490 (1123)
T PRK11448 412 LGLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIALMYRLLKAKRFRRILFLVDRSALGEQAEDAFKDT-KIEG 490 (1123)
T ss_pred CCCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHHHHhcCccCeEEEEecHHHHHHHHHHHHHhc-cccc
Confidence 356789999987775 2467899999999999775544433211 12358999999999999999887542 2111
Q ss_pred CCEE--EEEEe--eeecCCCCccEEEEchHHHHHHHhcC------CCCCCccEEEEeCCCcCCCCcc-------H-----
Q 001722 396 GDKV--GYAIR--FEDVTGPSTLIKYMTDGVLLRETLKD------SDLDKYRVIVMDEAHERSLSTD-------V----- 453 (1020)
Q Consensus 396 G~~V--Gy~ir--~e~~~s~~t~I~~~T~g~LLr~ll~d------~~L~~~s~IIIDEaHERs~~tD-------~----- 453 (1020)
+..+ -|.+. .+......+.|+|+|...|.+.+... +.+..+++||+|||| |+...| +
T Consensus 491 ~~~~~~i~~i~~L~~~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaH-Rs~~~d~~~~~~~~~~~~~ 569 (1123)
T PRK11448 491 DQTFASIYDIKGLEDKFPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAH-RGYTLDKEMSEGELQFRDQ 569 (1123)
T ss_pred ccchhhhhchhhhhhhcccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCC-CCCccccccccchhccchh
Confidence 1111 01111 11122345789999999887765421 347889999999999 665311 1
Q ss_pred --HHHHHHHHHhhcCCceEEEEeccCCHHHHHHHhCCCCeEeec-------Cccc----ceeee---------ecCC---
Q 001722 454 --LFGILKKVVARRRDFKLIVTSATLNAQKFSDFFGSVPIFHIP-------GRTF----PVNTL---------YSKT--- 508 (1020)
Q Consensus 454 --ll~lLk~il~~r~~lklIlmSATld~~~f~~~f~~~pvi~i~-------gr~~----pV~i~---------y~~~--- 508 (1020)
.....+.++... +..+|++|||+.. ...++|+. |++... |-.. |+.+. |...
T Consensus 570 ~~~~~~yr~iL~yF-dA~~IGLTATP~r-~t~~~FG~-pv~~Ysl~eAI~DG~Lv~~~~p~~i~t~~~~~gi~~~~~e~~ 646 (1123)
T PRK11448 570 LDYVSKYRRVLDYF-DAVKIGLTATPAL-HTTEIFGE-PVYTYSYREAVIDGYLIDHEPPIRIETRLSQEGIHFEKGEEV 646 (1123)
T ss_pred hhHHHHHHHHHhhc-CccEEEEecCCcc-chhHHhCC-eeEEeeHHHHHhcCCcccCcCCEEEEEEeccccccccccchh
Confidence 134456666543 5678999999963 23567763 443221 2111 11110 1000
Q ss_pred --------C-----ch---hHHH--------------HHHHHHHHHhh-cCCCCCEEEEcCCHHHHHHHHHHHHHHHHHh
Q 001722 509 --------P-----CE---DYVE--------------AAVKQAMTIHI-TSPPGDILIFMTGQDEIEAACFALKERMEQL 557 (1020)
Q Consensus 509 --------~-----~~---dyl~--------------~av~~~l~i~~-~~~~g~ILVFl~g~~eie~l~~~L~e~l~~l 557 (1020)
. .. +|.. ..+..++ .+. ...++++||||.+.++++.++..|.+.+...
T Consensus 647 ~~~~~~~~~i~~~~l~d~~~~~~~~~~~~vi~~~~~~~i~~~l~-~~l~~~~~~KtiIF~~s~~HA~~i~~~L~~~f~~~ 725 (1123)
T PRK11448 647 EVINTQTGEIDLATLEDEVDFEVEDFNRRVITESFNRVVCEELA-KYLDPTGEGKTLIFAATDAHADMVVRLLKEAFKKK 725 (1123)
T ss_pred hhcchhhhhhhhccCcHHHhhhHHHHHHHHhhHHHHHHHHHHHH-HHHhccCCCcEEEEEcCHHHHHHHHHHHHHHHHhh
Confidence 0 00 0100 0111122 122 2235899999999999999999888765432
Q ss_pred hccccCCCCCeEEEEecCCCCHHHHHHHHHHhcCCCe-EEEEecchhhccCCCCCeeEEEEcCCccceeccCCCCccccc
Q 001722 558 ISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTR-KCIVATNIAETSLTVDGIFYVIDTGYGKMKVYNPKMGMDALQ 636 (1020)
Q Consensus 558 ~~~~~~~~~~l~vl~lhs~L~~~eq~~I~~~f~~g~r-kVIVATniaEtGItIp~V~~VID~G~~K~~~yd~~~g~~~L~ 636 (1020)
. .......+..++|+.+ ++..+++.|+++.. +|+|+++++.||+|+|.|.+||- +.
T Consensus 726 ~----~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~v~~vVf--------~r--------- 782 (1123)
T PRK11448 726 Y----GQVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTTGIDVPSICNLVF--------LR--------- 782 (1123)
T ss_pred c----CCcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccccCCCcccccEEEE--------ec---------
Confidence 1 1122335566888886 45679999998876 79999999999999999999994 22
Q ss_pred ccccCHHHHHHHhcccCCCCC--CE-EEEccC
Q 001722 637 VFPVSRAAADQRAGRAGRTGP--GT-CYRLYT 665 (1020)
Q Consensus 637 ~~piS~as~~QRaGRAGR~g~--G~-cyrLyt 665 (1020)
.+.|...|.||+||+.|..| |+ ++.+|.
T Consensus 783 -pvkS~~lf~QmIGRgtR~~~~~~K~~f~I~D 813 (1123)
T PRK11448 783 -RVRSRILYEQMLGRATRLCPEIGKTHFRIFD 813 (1123)
T ss_pred -CCCCHHHHHHHHhhhccCCccCCCceEEEEe
Confidence 46899999999999999987 43 555555
No 96
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.86 E-value=1.4e-21 Score=215.97 Aligned_cols=308 Identities=20% Similarity=0.217 Sum_probs=214.6
Q ss_pred HHHHHHHHHHHHhCCeEEEEecCCCchHHHHHHHHHHhcccC---CCEEEEEcccHHHHHHHHHHHHHHhccccCCEEEE
Q 001722 325 FSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTT---NGIVGCTQPRRVAAMSVAKRVSEEMDTELGDKVGY 401 (1020)
Q Consensus 325 ~~~q~eil~~i~~~q~vII~gpTGSGKTtqi~q~Lle~~~~~---~~~Il~tqPrR~lA~qva~rva~e~~~~lG~~VGy 401 (1020)
.+.|...++.|+++++++-.+-||||||.++..++++.+... +.+.+++.|+|.||.|+.+-+ +++|.-.+..+..
T Consensus 45 tpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s~~g~RalilsptreLa~qtlkvv-kdlgrgt~lr~s~ 123 (529)
T KOG0337|consen 45 TPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHSQTGLRALILSPTRELALQTLKVV-KDLGRGTKLRQSL 123 (529)
T ss_pred CchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhccccccceeeccCcHHHHHHHHHHH-HHhccccchhhhh
Confidence 355777888899999999999999999999999888875432 358899999999999999887 4455433322221
Q ss_pred EEeeee------cCCCCccEEEEchHHHHHHHhc-CCCCCCccEEEEeCCCcCCCCccHHHHHHHHHHhhcCCceEEEEe
Q 001722 402 AIRFED------VTGPSTLIKYMTDGVLLRETLK-DSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTS 474 (1020)
Q Consensus 402 ~ir~e~------~~s~~t~I~~~T~g~LLr~ll~-d~~L~~~s~IIIDEaHERs~~tD~ll~lLk~il~~r~~lklIlmS 474 (1020)
.+.++. ..+.+.+|+++|||.++..... +-.|+.+.+||+||++ |-..+.+...+-..+-....+.+.++||
T Consensus 124 ~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem~l~l~sveyVVfdEad-rlfemgfqeql~e~l~rl~~~~QTllfS 202 (529)
T KOG0337|consen 124 LVGGDSIEEQFILLNENPDIIIATPGRLLHLGVEMTLTLSSVEYVVFDEAD-RLFEMGFQEQLHEILSRLPESRQTLLFS 202 (529)
T ss_pred hcccchHHHHHHHhccCCCEEEecCceeeeeehheeccccceeeeeehhhh-HHHhhhhHHHHHHHHHhCCCcceEEEEe
Confidence 122221 2345788999999998765432 3458999999999999 5544444333333333344567999999
Q ss_pred ccCCH--HHHHHHhCCCCe-Ee--ecCcccc-eeeeecCCCchhHHHHHHHHHHHHhhcCCCCCEEEEcCCHHHHHHHHH
Q 001722 475 ATLNA--QKFSDFFGSVPI-FH--IPGRTFP-VNTLYSKTPCEDYVEAAVKQAMTIHITSPPGDILIFMTGQDEIEAACF 548 (1020)
Q Consensus 475 ATld~--~~f~~~f~~~pv-i~--i~gr~~p-V~i~y~~~~~~dyl~~av~~~l~i~~~~~~g~ILVFl~g~~eie~l~~ 548 (1020)
||+.- -.|+.-=...|+ +. ++.+.-+ ++..|......+- .+++..++.-+. .+...+||+++..+++-+..
T Consensus 203 atlp~~lv~fakaGl~~p~lVRldvetkise~lk~~f~~~~~a~K-~aaLl~il~~~~--~~~~t~vf~~tk~hve~~~~ 279 (529)
T KOG0337|consen 203 ATLPRDLVDFAKAGLVPPVLVRLDVETKISELLKVRFFRVRKAEK-EAALLSILGGRI--KDKQTIVFVATKHHVEYVRG 279 (529)
T ss_pred ccCchhhHHHHHccCCCCceEEeehhhhcchhhhhheeeeccHHH-HHHHHHHHhccc--cccceeEEecccchHHHHHH
Confidence 99943 244442212232 11 1111111 1122221111111 112222222111 14479999999999998888
Q ss_pred HHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHHHhcCCCeEEEEecchhhccCCCCCeeEEEEcCCccceeccC
Q 001722 549 ALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAETSLTVDGIFYVIDTGYGKMKVYNP 628 (1020)
Q Consensus 549 ~L~e~l~~l~~~~~~~~~~l~vl~lhs~L~~~eq~~I~~~f~~g~rkVIVATniaEtGItIp~V~~VID~G~~K~~~yd~ 628 (1020)
.|.. .++.+-.+||+|.++.|..-+..|..++..++|.|++|++|+|||...-||+ ||
T Consensus 280 ll~~-------------~g~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~diplldnvin--------yd- 337 (529)
T KOG0337|consen 280 LLRD-------------FGGEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDVAARGLDIPLLDNVIN--------YD- 337 (529)
T ss_pred HHHh-------------cCCCccccccccChHhhhhccccccCCccceEEEehhhhccCCCcccccccc--------cc-
Confidence 7764 2667788999999999998999999999999999999999999999999998 66
Q ss_pred CCCcccccccccCHHHHHHHhcccCCCC-CCEEEEccChhh
Q 001722 629 KMGMDALQVFPVSRAAADQRAGRAGRTG-PGTCYRLYTESA 668 (1020)
Q Consensus 629 ~~g~~~L~~~piS~as~~QRaGRAGR~g-~G~cyrLyt~~~ 668 (1020)
.|.+..-|.||.||+.|.| .|..|.+....+
T Consensus 338 ---------~p~~~klFvhRVgr~aragrtg~aYs~V~~~~ 369 (529)
T KOG0337|consen 338 ---------FPPDDKLFVHRVGRVARAGRTGRAYSLVASTD 369 (529)
T ss_pred ---------CCCCCceEEEEecchhhccccceEEEEEeccc
Confidence 6777888999999999999 599999987654
No 97
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.84 E-value=3e-19 Score=210.38 Aligned_cols=312 Identities=18% Similarity=0.246 Sum_probs=223.9
Q ss_pred HHHHHcCCC--cHHHHHHHHHHHHhC------CeEEEEecCCCchHHHHHHHHHHhcccCCCEEEEEcccHHHHHHHHHH
Q 001722 315 LAEQRQYLP--IFSVRDELLQVIREN------QVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKR 386 (1020)
Q Consensus 315 l~~~R~~LP--i~~~q~eil~~i~~~------q~vII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~lA~qva~r 386 (1020)
+......|| +...|+.++.-|... -+=+|.|.-|||||.++...++.. +..+..+....||-+||.|-+..
T Consensus 252 ~~~~~~~LPF~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~a-i~~G~Q~ALMAPTEILA~QH~~~ 330 (677)
T COG1200 252 LAKFLAALPFKLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAA-IEAGYQAALMAPTEILAEQHYES 330 (677)
T ss_pred HHHHHHhCCCCccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHH-HHcCCeeEEeccHHHHHHHHHHH
Confidence 334445555 678899988888654 234899999999999987777654 33466899999999999999999
Q ss_pred HHHHhccccCCEEEEEEeee----------ecCCCCccEEEEchHHHHHHHhcCCCCCCccEEEEeCCCcCCCCccHHHH
Q 001722 387 VSEEMDTELGDKVGYAIRFE----------DVTGPSTLIKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFG 456 (1020)
Q Consensus 387 va~e~~~~lG~~VGy~ir~e----------~~~s~~t~I~~~T~g~LLr~ll~d~~L~~~s~IIIDEaHERs~~tD~ll~ 456 (1020)
+++.+. ++|..|++-+... ...+...+|++.|...+. .+-.+.++.+||+||=|..++..-.
T Consensus 331 ~~~~l~-~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQ----d~V~F~~LgLVIiDEQHRFGV~QR~--- 402 (677)
T COG1200 331 LRKWLE-PLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQ----DKVEFHNLGLVIIDEQHRFGVHQRL--- 402 (677)
T ss_pred HHHHhh-hcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhh----cceeecceeEEEEeccccccHHHHH---
Confidence 977654 4566676643322 133457899999987653 2345889999999999976655432
Q ss_pred HHHHHHhhcC-CceEEEEeccCCHHHHH-HHhCCCCeE---eecCcccceeeeecCCCchhHHHHHHHHHHHHhhcCCCC
Q 001722 457 ILKKVVARRR-DFKLIVTSATLNAQKFS-DFFGSVPIF---HIPGRTFPVNTLYSKTPCEDYVEAAVKQAMTIHITSPPG 531 (1020)
Q Consensus 457 lLk~il~~r~-~lklIlmSATld~~~f~-~~f~~~pvi---~i~gr~~pV~i~y~~~~~~dyl~~av~~~l~i~~~~~~g 531 (1020)
.+..+.. ...+++||||+-+..++ ..|++-.+- ..|.-.-|+.....+....+.+-..+...+. .+.
T Consensus 403 ---~L~~KG~~~Ph~LvMTATPIPRTLAlt~fgDldvS~IdElP~GRkpI~T~~i~~~~~~~v~e~i~~ei~-----~Gr 474 (677)
T COG1200 403 ---ALREKGEQNPHVLVMTATPIPRTLALTAFGDLDVSIIDELPPGRKPITTVVIPHERRPEVYERIREEIA-----KGR 474 (677)
T ss_pred ---HHHHhCCCCCcEEEEeCCCchHHHHHHHhccccchhhccCCCCCCceEEEEeccccHHHHHHHHHHHHH-----cCC
Confidence 1223344 57899999999666655 456654433 3343335787777665444433333332222 367
Q ss_pred CEEEEcCCHHHHHHHH----HHHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHHHhcCCCeEEEEecchhhccC
Q 001722 532 DILIFMTGQDEIEAAC----FALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAETSL 607 (1020)
Q Consensus 532 ~ILVFl~g~~eie~l~----~~L~e~l~~l~~~~~~~~~~l~vl~lhs~L~~~eq~~I~~~f~~g~rkVIVATniaEtGI 607 (1020)
++.|-||=.++-|.+- ..+.+.+. .-.+++.|..+||.|++++++.|++.|++|+.+|+|||.+.|-||
T Consensus 475 QaY~VcPLIeESE~l~l~~a~~~~~~L~-------~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ILVaTTVIEVGV 547 (677)
T COG1200 475 QAYVVCPLIEESEKLELQAAEELYEELK-------SFLPELKVGLVHGRMKPAEKDAVMEAFKEGEIDILVATTVIEVGV 547 (677)
T ss_pred EEEEEeccccccccchhhhHHHHHHHHH-------HHcccceeEEEecCCChHHHHHHHHHHHcCCCcEEEEeeEEEecc
Confidence 8999999887776332 22222222 234788899999999999999999999999999999999999999
Q ss_pred CCCCeeEEEEcCCccceeccCCCCcccccccccCHHHHHHHhcccCCCC-CCEEEEccChh
Q 001722 608 TVDGIFYVIDTGYGKMKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTG-PGTCYRLYTES 667 (1020)
Q Consensus 608 tIp~V~~VID~G~~K~~~yd~~~g~~~L~~~piS~as~~QRaGRAGR~g-~G~cyrLyt~~ 667 (1020)
|+|+.++.|- +|+. -...++.-|-.||.||-+ +..|+.+|...
T Consensus 548 dVPnATvMVI--------e~AE---------RFGLaQLHQLRGRVGRG~~qSyC~Ll~~~~ 591 (677)
T COG1200 548 DVPNATVMVI--------ENAE---------RFGLAQLHQLRGRVGRGDLQSYCVLLYKPP 591 (677)
T ss_pred cCCCCeEEEE--------echh---------hhhHHHHHHhccccCCCCcceEEEEEeCCC
Confidence 9999987662 5643 345678899999999988 69999999754
No 98
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=99.83 E-value=6e-23 Score=241.22 Aligned_cols=449 Identities=9% Similarity=-0.167 Sum_probs=351.0
Q ss_pred HHHHHcCCCcHHHHHHHHHHHHhCCeEEEEecCCCchHHHHHHHHHHhcccCC----CEEEEEcccHHHHHHHHHHHHHH
Q 001722 315 LAEQRQYLPIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTTN----GIVGCTQPRRVAAMSVAKRVSEE 390 (1020)
Q Consensus 315 l~~~R~~LPi~~~q~eil~~i~~~q~vII~gpTGSGKTtqi~q~Lle~~~~~~----~~Il~tqPrR~lA~qva~rva~e 390 (1020)
|+..+.-+|...+-+.||+++..|.++++-+.||||||++.++++++...... +.++.++||++.|...+.+++-+
T Consensus 398 I~getgcgk~tq~aq~iLe~~~~ns~g~~~na~v~qprrisaisiaerva~er~e~~g~tvgy~vRf~Sa~prpyg~i~f 477 (1282)
T KOG0921|consen 398 IKGETGCGKSTQVAQFLLESFLENSNGASFNAVVSQPRRISAISLAERVANERGEEVGETCGYNVRFDSATPRPYGSIMF 477 (1282)
T ss_pred EeecccccchhHHHHHHHHHHhhccccccccceeccccccchHHHHHHHHHhhHHhhcccccccccccccccccccceee
Confidence 44557789999999999999999999999999999999999999999865433 47888999999999999998877
Q ss_pred hccccCCEEEEEEeeeec-CCCCccEEEEchHHHHHHHhcCCCCCCccEEEEeCCCcCCCCccHHHHHHHHHHhhcCCce
Q 001722 391 MDTELGDKVGYAIRFEDV-TGPSTLIKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFK 469 (1020)
Q Consensus 391 ~~~~lG~~VGy~ir~e~~-~s~~t~I~~~T~g~LLr~ll~d~~L~~~s~IIIDEaHERs~~tD~ll~lLk~il~~r~~lk 469 (1020)
.++.++...+|.++++.. .-.+..+.++|++.|++.++.+ +-...+.|.||.|+++++||+++.++..+ +.
T Consensus 478 ctvgvllr~~e~glrg~sh~i~deiherdv~~dfll~~lr~--m~~ty~dl~v~lmsatIdTd~f~~~f~~~------p~ 549 (1282)
T KOG0921|consen 478 CTVGVLLRMMENGLRGISHVIIDEIHERDVDTDFVLIVLRE--MISTYRDLRVVLMSATIDTDLFTNFFSSI------PD 549 (1282)
T ss_pred eccchhhhhhhhcccccccccchhhhhhccchHHHHHHHHh--hhccchhhhhhhhhcccchhhhhhhhccc------cc
Confidence 777777888888777653 3456778899999999888765 66778999999999999999999988875 34
Q ss_pred EEEEeccCCHHHHHHHhCCCCeEeecCcccceeeeec------------------------C------------CCchhH
Q 001722 470 LIVTSATLNAQKFSDFFGSVPIFHIPGRTFPVNTLYS------------------------K------------TPCEDY 513 (1020)
Q Consensus 470 lIlmSATld~~~f~~~f~~~pvi~i~gr~~pV~i~y~------------------------~------------~~~~dy 513 (1020)
+.++++|.++..|..++-.+++..+++++++++..+. . ......
T Consensus 550 ~~~~grt~pvq~F~led~~~~~~~vp~~~~~~k~k~~~~~~~~~~ddK~~n~n~~~dd~~~~~~~~am~~~se~d~~f~l 629 (1282)
T KOG0921|consen 550 VTVHGRTFPVQSFFLEDIIQMTQFVPSEPSQKKRKKDDDEEDEEVDDKGRNMNILCDPSYNESTRTAMSRLSEKDIPFGL 629 (1282)
T ss_pred eeeccccccHHHHHHHHhhhhhhccCCCcCccchhhcccccCchhhhcccccccccChhhcchhhhhhhcchhhcchhHH
Confidence 5999999999999999888999999999888754421 0 011234
Q ss_pred HHHHHHHHHHH------hhcCCCCCEEEEcCCHHHHHHHHHHHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHH
Q 001722 514 VEAAVKQAMTI------HITSPPGDILIFMTGQDEIEAACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFE 587 (1020)
Q Consensus 514 l~~av~~~l~i------~~~~~~g~ILVFl~g~~eie~l~~~L~e~l~~l~~~~~~~~~~l~vl~lhs~L~~~eq~~I~~ 587 (1020)
+++.+..+... ..-.+++..|+||+++.-+......+... +-+ ......+.+.|..++..++..+++
T Consensus 630 ~Eal~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y-~il------p~Hsq~~~~eqrkvf~~~p~gv~k 702 (1282)
T KOG0921|consen 630 IEALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKY-EIL------PLHSQLTSQEQRKVFEPVPEGVTK 702 (1282)
T ss_pred HHHHHhhhcccCCccceeeecCchHHhhhhhhhhhhhhhhccchhc-ccc------cchhhcccHhhhhccCcccccccc
Confidence 55555444332 22357899999999998887776665432 111 223556888999999999999999
Q ss_pred HhcCCCeEEEEecchhhccCCCCCeeEEEEcCCccceeccCCCCcccccccccCHHHHHHHhcccCCCCCCEEEEccChh
Q 001722 588 KAKEGTRKCIVATNIAETSLTVDGIFYVIDTGYGKMKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTGPGTCYRLYTES 667 (1020)
Q Consensus 588 ~f~~g~rkVIVATniaEtGItIp~V~~VID~G~~K~~~yd~~~g~~~L~~~piS~as~~QRaGRAGR~g~G~cyrLyt~~ 667 (1020)
....+.++++..|++.++.|++..+.+|++++-.+.+.+-....++...+.+.+...-.||.|+|+|...+.||.++...
T Consensus 703 ii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grvR~G~~f~lcs~arF~~l~~~ 782 (1282)
T KOG0921|consen 703 IILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRVRPGFCFHLCSRARFEALEDH 782 (1282)
T ss_pred cccccceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhcccCceecccccccccHHHHHHHHHhc
Confidence 99999999999999999999999999999999999888888888888888899999999999999999999999999988
Q ss_pred hHhhccCCCCcchhcccchhHHHHHHhhcccCcccCC--CCCCCCChhhHHHHHHHHHHhcCccCCCCccHHHHHhhcCC
Q 001722 668 AYLNEMLPSPVPEIQRTNLGNVVLLLKSLKIDNLLDF--DFMDPPPQENILNSMYQLWVLGALNNVGALTDLGWKMVEFP 745 (1020)
Q Consensus 668 ~~~~~m~~~~~PEI~r~~L~~vvL~lk~lgi~~~~~f--~~~dpP~~~~i~~al~~L~~lgaLd~~g~LT~lG~~ma~lP 745 (1020)
.+ .+|..++.|||.++.+...++.++.+-...+..+ +.+.+|+......+...+..+-+.+..-.+|.+|+-....|
T Consensus 783 ~t-~em~r~plhemalTikll~l~SI~~fl~kal~~~p~dav~e~e~~l~~m~~ld~n~elt~lg~~la~l~iep~~~k~ 861 (1282)
T KOG0921|consen 783 GT-AEMFRTPLHEIALTIKLLRLGSIGEFLGKALQPPPYDAVIEAEAVLREMGALDANDELTPLGRMLARLPIEPRIGKM 861 (1282)
T ss_pred Cc-HhhhcCccHHHHhhHHHHHhhhHHHHHhhccCCCchhhccCchHHHHHhhhhhccCcccchhhhhhhccCcccccce
Confidence 87 5688999999999987766666555444444444 34566666555444444444433333445789999999999
Q ss_pred CChHHHHHHhhhhccCcHHHHHHHHHHhCCCCcc
Q 001722 746 LDPPLAKMLLMGEQLGCLDEVLTIVSMLSVPSVF 779 (1020)
Q Consensus 746 ldp~lak~ll~~~~~~c~~e~l~I~a~ls~~~~f 779 (1020)
+.|..+++.+..+.+-.++-+.++.+.-..+.+|
T Consensus 862 ~~lg~~~g~~~~m~~~as~~s~~~~~~~~~~~~~ 895 (1282)
T KOG0921|consen 862 MILGTALGAGSVMCDVASAMSFPTPFVPREKHHS 895 (1282)
T ss_pred eeechhhccchhhhhhhccccccccccccccccc
Confidence 9999999988776554444444444443334444
No 99
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.83 E-value=5.9e-19 Score=217.68 Aligned_cols=297 Identities=19% Similarity=0.239 Sum_probs=223.5
Q ss_pred HHHHHHHHHHHh----CC--eEEEEecCCCchHHHHHHHHHHhcccCCCEEEEEcccHHHHHHHHHHHHHHhccccCCEE
Q 001722 326 SVRDELLQVIRE----NQ--VVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELGDKV 399 (1020)
Q Consensus 326 ~~q~eil~~i~~----~q--~vII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~lA~qva~rva~e~~~~lG~~V 399 (1020)
+-|...|+.|.. ++ +=+|||.-|-|||.++.-.+..... .++.|.+++||-+||.|-++.+.+.|. .++..|
T Consensus 597 ~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~-~GKQVAvLVPTTlLA~QHy~tFkeRF~-~fPV~I 674 (1139)
T COG1197 597 PDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVM-DGKQVAVLVPTTLLAQQHYETFKERFA-GFPVRI 674 (1139)
T ss_pred HHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhc-CCCeEEEEcccHHhHHHHHHHHHHHhc-CCCeeE
Confidence 445555666643 32 4599999999999998776666543 367899999999999999999977664 455667
Q ss_pred EEEEeeee----------cCCCCccEEEEchHHHHHHHhcCCCCCCccEEEEeCCCcCCCCccHHHHHHHHHHhhcCCce
Q 001722 400 GYAIRFED----------VTGPSTLIKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFK 469 (1020)
Q Consensus 400 Gy~ir~e~----------~~s~~t~I~~~T~g~LLr~ll~d~~L~~~s~IIIDEaHERs~~tD~ll~lLk~il~~r~~lk 469 (1020)
+.--||.+ ......+|++.|.-.| ..+-.+.+++++||||-|..++..-- -|| +.+.++-
T Consensus 675 ~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrLL----~kdv~FkdLGLlIIDEEqRFGVk~KE---kLK---~Lr~~VD 744 (1139)
T COG1197 675 EVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRLL----SKDVKFKDLGLLIIDEEQRFGVKHKE---KLK---ELRANVD 744 (1139)
T ss_pred EEecccCCHHHHHHHHHHHhcCCccEEEechHhh----CCCcEEecCCeEEEechhhcCccHHH---HHH---HHhccCc
Confidence 76667755 2245788999998654 44566899999999999977776532 222 2467899
Q ss_pred EEEEeccCCHHHHHHHhCC---CCeEee-cCcccceeeeecCCCchhHHHHHHHHHHHHhhcCCCCCEEEEcCCHHHHHH
Q 001722 470 LIVTSATLNAQKFSDFFGS---VPIFHI-PGRTFPVNTLYSKTPCEDYVEAAVKQAMTIHITSPPGDILIFMTGQDEIEA 545 (1020)
Q Consensus 470 lIlmSATld~~~f~~~f~~---~pvi~i-~gr~~pV~i~y~~~~~~dyl~~av~~~l~i~~~~~~g~ILVFl~g~~eie~ 545 (1020)
++-||||+=+..+.--+.+ -.++.. |...+||..+..+.. ...+.+++..-+ ..+|++-.-.|..++|+.
T Consensus 745 vLTLSATPIPRTL~Msm~GiRdlSvI~TPP~~R~pV~T~V~~~d-~~~ireAI~REl-----~RgGQvfYv~NrV~~Ie~ 818 (1139)
T COG1197 745 VLTLSATPIPRTLNMSLSGIRDLSVIATPPEDRLPVKTFVSEYD-DLLIREAILREL-----LRGGQVFYVHNRVESIEK 818 (1139)
T ss_pred EEEeeCCCCcchHHHHHhcchhhhhccCCCCCCcceEEEEecCC-hHHHHHHHHHHH-----hcCCEEEEEecchhhHHH
Confidence 9999999965555443333 234443 456688988876543 233333332222 247888888999999999
Q ss_pred HHHHHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHHHhcCCCeEEEEecchhhccCCCCCeeEEEEcCCcccee
Q 001722 546 ACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAETSLTVDGIFYVIDTGYGKMKV 625 (1020)
Q Consensus 546 l~~~L~e~l~~l~~~~~~~~~~l~vl~lhs~L~~~eq~~I~~~f~~g~rkVIVATniaEtGItIp~V~~VID~G~~K~~~ 625 (1020)
++..|++. .|...|...||+|+..+-+.|+..|-+|...|+|||.|.|+|||||+.+.+|-
T Consensus 819 ~~~~L~~L-----------VPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIPnANTiII-------- 879 (1139)
T COG1197 819 KAERLREL-----------VPEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTTIIETGIDIPNANTIII-------- 879 (1139)
T ss_pred HHHHHHHh-----------CCceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEeeeeecCcCCCCCceEEE--------
Confidence 99988764 58999999999999999999999999999999999999999999999997762
Q ss_pred ccCCCCcccccccccCHHHHHHHhcccCCCCC-CEEEEccChhh
Q 001722 626 YNPKMGMDALQVFPVSRAAADQRAGRAGRTGP-GTCYRLYTESA 668 (1020)
Q Consensus 626 yd~~~g~~~L~~~piS~as~~QRaGRAGR~g~-G~cyrLyt~~~ 668 (1020)
.+. .-...++..|-.||.||... |.||.||....
T Consensus 880 e~A---------D~fGLsQLyQLRGRVGRS~~~AYAYfl~p~~k 914 (1139)
T COG1197 880 ERA---------DKFGLAQLYQLRGRVGRSNKQAYAYFLYPPQK 914 (1139)
T ss_pred ecc---------ccccHHHHHHhccccCCccceEEEEEeecCcc
Confidence 221 12446788999999999885 99999998654
No 100
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=99.83 E-value=1.8e-19 Score=195.90 Aligned_cols=302 Identities=18% Similarity=0.192 Sum_probs=206.2
Q ss_pred HHHHHHHHHHHHhCCeEEEEecCCCchHHHHHHHHHHhcccCCCEEEEEcccHHHHHHHHHHHHHHhccccCCEEEEE--
Q 001722 325 FSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELGDKVGYA-- 402 (1020)
Q Consensus 325 ~~~q~eil~~i~~~q~vII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~lA~qva~rva~e~~~~lG~~VGy~-- 402 (1020)
.+.|.+.|++...+..++++.|||.|||++..++.+-. .|-.+++.|...|.....-.+. .+|......-.-+
T Consensus 96 rplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~a----dg~alvi~plislmedqil~lk-qlgi~as~lnanssk 170 (695)
T KOG0353|consen 96 RPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALCA----DGFALVICPLISLMEDQILQLK-QLGIDASMLNANSSK 170 (695)
T ss_pred ChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHhc----CCceEeechhHHHHHHHHHHHH-HhCcchhhccCcccH
Confidence 46789999999999999999999999999876654432 4567888899988877666552 2332110000000
Q ss_pred ---Eeeee-c--CCCCccEEEEchHHHHHH------HhcCCCCCCccEEEEeCCCc-----CCCCccH-HHHHHHHHHhh
Q 001722 403 ---IRFED-V--TGPSTLIKYMTDGVLLRE------TLKDSDLDKYRVIVMDEAHE-----RSLSTDV-LFGILKKVVAR 464 (1020)
Q Consensus 403 ---ir~e~-~--~s~~t~I~~~T~g~LLr~------ll~d~~L~~~s~IIIDEaHE-----Rs~~tD~-ll~lLk~il~~ 464 (1020)
-+.+. . ....-+++|+||+.+... +-.......+.+|-|||+|+ ....+|+ .+++|++ .
T Consensus 171 e~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~iaidevhccsqwghdfr~dy~~l~ilkr---q 247 (695)
T KOG0353|consen 171 EEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKLIAIDEVHCCSQWGHDFRPDYKALGILKR---Q 247 (695)
T ss_pred HHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEEEeecceeehhhhCcccCcchHHHHHHHH---h
Confidence 00111 1 123467999999976543 22222356688999999996 3344453 5566665 5
Q ss_pred cCCceEEEEeccCCH---HHHHHHhCCCCeEeec-Ccccc---eeeeecCCCchhHHHHHHHHHHHHhhcCCCCCEEEEc
Q 001722 465 RRDFKLIVTSATLNA---QKFSDFFGSVPIFHIP-GRTFP---VNTLYSKTPCEDYVEAAVKQAMTIHITSPPGDILIFM 537 (1020)
Q Consensus 465 r~~lklIlmSATld~---~~f~~~f~~~pvi~i~-gr~~p---V~i~y~~~~~~dyl~~av~~~l~i~~~~~~g~ILVFl 537 (1020)
.+...+|+++||... ....+.+.-...+... |...| .++.--+...++.++..++.+- ....+..-||||
T Consensus 248 f~~~~iigltatatn~vl~d~k~il~ie~~~tf~a~fnr~nl~yev~qkp~n~dd~~edi~k~i~---~~f~gqsgiiyc 324 (695)
T KOG0353|consen 248 FKGAPIIGLTATATNHVLDDAKDILCIEAAFTFRAGFNRPNLKYEVRQKPGNEDDCIEDIAKLIK---GDFAGQSGIIYC 324 (695)
T ss_pred CCCCceeeeehhhhcchhhHHHHHHhHHhhheeecccCCCCceeEeeeCCCChHHHHHHHHHHhc---cccCCCcceEEE
Confidence 788999999999832 2222333211111111 11111 1222223345566665554432 222344568999
Q ss_pred CCHHHHHHHHHHHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHHHhcCCCeEEEEecchhhccCCCCCeeEEEE
Q 001722 538 TGQDEIEAACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAETSLTVDGIFYVID 617 (1020)
Q Consensus 538 ~g~~eie~l~~~L~e~l~~l~~~~~~~~~~l~vl~lhs~L~~~eq~~I~~~f~~g~rkVIVATniaEtGItIp~V~~VID 617 (1020)
-++.+++.++..|.. .++....+|+.|.++++..+-+.+-.|++.|||||-.+.+|||-|+|++||+
T Consensus 325 ~sq~d~ekva~alkn-------------~gi~a~~yha~lep~dks~~hq~w~a~eiqvivatvafgmgidkpdvrfvih 391 (695)
T KOG0353|consen 325 FSQKDCEKVAKALKN-------------HGIHAGAYHANLEPEDKSGAHQGWIAGEIQVIVATVAFGMGIDKPDVRFVIH 391 (695)
T ss_pred eccccHHHHHHHHHh-------------cCccccccccccCccccccccccccccceEEEEEEeeecccCCCCCeeEEEe
Confidence 999999999998865 3778889999999999999999999999999999999999999999999998
Q ss_pred cCCccceeccCCCCcccccccccCHHHHHH-------------------------------------------HhcccCC
Q 001722 618 TGYGKMKVYNPKMGMDALQVFPVSRAAADQ-------------------------------------------RAGRAGR 654 (1020)
Q Consensus 618 ~G~~K~~~yd~~~g~~~L~~~piS~as~~Q-------------------------------------------RaGRAGR 654 (1020)
-. .|.|..+|.| ..|||||
T Consensus 392 hs------------------l~ksienyyqasarillrmtkqknksdtggstqinilevctnfkiffavfsekesgragr 453 (695)
T KOG0353|consen 392 HS------------------LPKSIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGRAGR 453 (695)
T ss_pred cc------------------cchhHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecchhcccccc
Confidence 43 4888888888 7899999
Q ss_pred CC-CCEEEEccChhh
Q 001722 655 TG-PGTCYRLYTESA 668 (1020)
Q Consensus 655 ~g-~G~cyrLyt~~~ 668 (1020)
.+ +..|+..|.-.+
T Consensus 454 d~~~a~cilyy~~~d 468 (695)
T KOG0353|consen 454 DDMKADCILYYGFAD 468 (695)
T ss_pred CCCcccEEEEechHH
Confidence 98 688988887544
No 101
>PF07717 OB_NTP_bind: Oligonucleotide/oligosaccharide-binding (OB)-fold; InterPro: IPR011709 This domain is found towards the C terminus of the DEAD-box helicases (IPR011545 from INTERPRO). In these helicases it appears to be always found in association with IPR007502 from INTERPRO. ; PDB: 3I4U_A 2XAU_B 3KX2_B.
Probab=99.81 E-value=9.2e-21 Score=182.21 Aligned_cols=101 Identities=38% Similarity=0.760 Sum_probs=80.9
Q ss_pred HHHHHHHHhcCCCCCCC-------------CCChHHHHHHHHhhccchhhhhcCCceeEEecCCcceeeCCCCcccCCCC
Q 001722 841 SQLLDILKTLKIPLTSS-------------GHDFDVVRKAICSAYFHNAARLKGVGEYINCRNGMPCHLHPSSAIYGLGY 907 (1020)
Q Consensus 841 ~qL~~~l~~~~~~~~s~-------------~~~~~~i~~~l~~g~~~nvA~~~~~g~y~~~~~~~~v~lHPsS~l~~~~~ 907 (1020)
+||.++|+++|+...+. ..+++.|++|||+|||+|+|++.+.+.|.++.++..|+|||+|+|++ .
T Consensus 1 ~QL~~il~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~aG~~~nvA~~~~~~~y~~~~~~~~v~iHPsS~l~~--~ 78 (114)
T PF07717_consen 1 KQLLRILERIGFVPQSASSQSISQRPPNENRDQWELIRAALCAGFYPNVARRDNKGSYKTLSNGQPVFIHPSSVLFK--K 78 (114)
T ss_dssp HHHHHHHHHTT----------TTST-----HTHCHHHHHHHHHHHCCCEEEE-TTSSEEETTTG-EEEE-TTSTTTT--T
T ss_pred CHHHHHHHHcCCCCCccccccccccccccccccHHHHHHHHHHhhhhheEEeCCCCCEEEecCCCEEEEecCccccc--c
Confidence 58999999998754332 03568999999999999999998889999998888999999999976 6
Q ss_pred CCCceeeeeeecchhhhhhhccccCHHHHHhhCCcc
Q 001722 908 TPEYVVYHELILTTKEYMQCATAVEPQWLSELGPMF 943 (1020)
Q Consensus 908 ~p~~vvy~el~~t~k~y~r~vt~i~~~wL~e~~p~~ 943 (1020)
+|+||||+|++.|+|.||++||+|+|+||.++||+|
T Consensus 79 ~p~~vvy~e~~~t~k~y~~~~t~I~~~wl~~~~~~~ 114 (114)
T PF07717_consen 79 PPKWVVYHELVRTSKPYMRDVTAISPEWLLLFAPHY 114 (114)
T ss_dssp T-SEEEEEEEEESSSEEEEEEEE--HHHHHHH-TTT
T ss_pred ccccchhhhheecCCcEEEECcCCCHHHHHHHcccC
Confidence 799999999999999999999999999999999986
No 102
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.80 E-value=4.6e-18 Score=207.86 Aligned_cols=126 Identities=15% Similarity=0.026 Sum_probs=95.5
Q ss_pred HHcCCCcHHHHHHHHHHHHhCCeEEEEecCCCchHHHHHHHHHHhcccCCCEEEEEcccHHHHHHHHHHHHHHhccccCC
Q 001722 318 QRQYLPIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELGD 397 (1020)
Q Consensus 318 ~R~~LPi~~~q~eil~~i~~~q~vII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~lA~qva~rva~e~~~~lG~ 397 (1020)
.|+.|-+.++--+++-.+.-++--|..++||+|||+++..+++...+. +..|.++.|++.||.+.+..+... ...+|.
T Consensus 75 ~~R~lg~~~ydvQliGg~~Lh~G~Iaem~TGeGKTL~a~Lpa~~~al~-G~~V~VvTpn~yLA~qd~e~m~~l-~~~lGL 152 (896)
T PRK13104 75 SLRTLGLRHFDVQLIGGMVLHEGNIAEMRTGEGKTLVATLPAYLNAIS-GRGVHIVTVNDYLAKRDSQWMKPI-YEFLGL 152 (896)
T ss_pred HHHHcCCCcchHHHhhhhhhccCccccccCCCCchHHHHHHHHHHHhc-CCCEEEEcCCHHHHHHHHHHHHHH-hcccCc
Confidence 366788888888888888777777899999999999988888866554 345888999999999999888554 455788
Q ss_pred EEEEEEeeeec----CCCCccEEEEchHHH-HHHHhcCCC-------CCCccEEEEeCCC
Q 001722 398 KVGYAIRFEDV----TGPSTLIKYMTDGVL-LRETLKDSD-------LDKYRVIVMDEAH 445 (1020)
Q Consensus 398 ~VGy~ir~e~~----~s~~t~I~~~T~g~L-Lr~ll~d~~-------L~~~s~IIIDEaH 445 (1020)
.||..+...+. ..-.++|+|+|+|.| +..+..+.. ...+.++||||||
T Consensus 153 tv~~i~gg~~~~~r~~~y~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaD 212 (896)
T PRK13104 153 TVGVIYPDMSHKEKQEAYKADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVD 212 (896)
T ss_pred eEEEEeCCCCHHHHHHHhCCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHh
Confidence 88875443221 112578999999999 555543322 2588999999999
No 103
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.78 E-value=9.6e-18 Score=208.24 Aligned_cols=306 Identities=19% Similarity=0.163 Sum_probs=182.8
Q ss_pred cHHHHHHHHHHHHh---CC-eEEEEecCCCchHHHHHHHHHHhccc---CCCEEEEEcccHHHHHHHHHHHHHHhccc--
Q 001722 324 IFSVRDELLQVIRE---NQ-VVVVVGETGSGKTTQLTQYLLEDGYT---TNGIVGCTQPRRVAAMSVAKRVSEEMDTE-- 394 (1020)
Q Consensus 324 i~~~q~eil~~i~~---~q-~vII~gpTGSGKTtqi~q~Lle~~~~---~~~~Il~tqPrR~lA~qva~rva~e~~~~-- 394 (1020)
.++.|..+++.+.. .+ .+++.||||+|||++...+.+..... ...+++.+.|.|.++.++++++....+..
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~~~~~~r~i~vlP~~t~ie~~~~r~~~~~~~~~~ 275 (733)
T COG1203 196 GYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEKIKLKSRVIYVLPFRTIIEDMYRRAKEIFGLFSV 275 (733)
T ss_pred hhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhccccccceEEEEccHHHHHHHHHHHHHhhhccccc
Confidence 45566666666643 34 88999999999999977766554333 35789999999999999999997654422
Q ss_pred cCC-EEEEEE----eee------ecCCC------CccEEEEchHHHHHHHhcCCCC-----CCccEEEEeCCCcCCCCc-
Q 001722 395 LGD-KVGYAI----RFE------DVTGP------STLIKYMTDGVLLRETLKDSDL-----DKYRVIVMDEAHERSLST- 451 (1020)
Q Consensus 395 lG~-~VGy~i----r~e------~~~s~------~t~I~~~T~g~LLr~ll~d~~L-----~~~s~IIIDEaHERs~~t- 451 (1020)
.+. ..|... ... ..+.. --.+.++|+-..+.....-... -..|++|+||+|-....+
T Consensus 276 ~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~~~~~~~ 355 (733)
T COG1203 276 IGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHLYADETM 355 (733)
T ss_pred ccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHHhhcccch
Confidence 111 111100 000 00000 0111222222222211111111 234799999999544442
Q ss_pred -cHHHHHHHHHHhhcCCceEEEEeccCCH---HHHHHHhCCCCeEeecCcccceeee-ec-CCCchhHHHHH--HHHHHH
Q 001722 452 -DVLFGILKKVVARRRDFKLIVTSATLNA---QKFSDFFGSVPIFHIPGRTFPVNTL-YS-KTPCEDYVEAA--VKQAMT 523 (1020)
Q Consensus 452 -D~ll~lLk~il~~r~~lklIlmSATld~---~~f~~~f~~~pvi~i~gr~~pV~i~-y~-~~~~~dyl~~a--v~~~l~ 523 (1020)
-++++++..+ ..-+.++|+||||++. +.|..+++....+...-...|.... .. .....+..... -.....
T Consensus 356 ~~~l~~~i~~l--~~~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 433 (733)
T COG1203 356 LAALLALLEAL--AEAGVPVLLMSATLPPFLKEKLKKALGKGREVVENAKFCPKEDEPGLKRKERVDVEDGPQEELIELI 433 (733)
T ss_pred HHHHHHHHHHH--HhCCCCEEEEecCCCHHHHHHHHHHHhcccceeccccccccccccccccccchhhhhhhhHhhhhcc
Confidence 2333333333 2347899999999963 4555555543222221111111000 00 00011111110 011111
Q ss_pred HhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHHHh----cCCCeEEEEe
Q 001722 524 IHITSPPGDILIFMTGQDEIEAACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKA----KEGTRKCIVA 599 (1020)
Q Consensus 524 i~~~~~~g~ILVFl~g~~eie~l~~~L~e~l~~l~~~~~~~~~~l~vl~lhs~L~~~eq~~I~~~f----~~g~rkVIVA 599 (1020)
......++++||-|+|...+..+...|++. .. .++.+||.+....|.+.++.. ..+.-.|+||
T Consensus 434 ~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~------------~~-~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVa 500 (733)
T COG1203 434 SEEVKEGKKVLVIVNTVDRAIELYEKLKEK------------GP-KVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVA 500 (733)
T ss_pred hhhhccCCcEEEEEecHHHHHHHHHHHHhc------------CC-CEEEEecccchhhHHHHHHHHHHHHhccCCeEEEE
Confidence 222345789999999999999999988753 12 799999999999999887744 3567899999
Q ss_pred cchhhccCCCCCeeEEEEcCCccceeccCCCCcccccccccCHHHHHHHhcccCCCC---CCEEEEccC
Q 001722 600 TNIAETSLTVDGIFYVIDTGYGKMKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTG---PGTCYRLYT 665 (1020)
Q Consensus 600 TniaEtGItIp~V~~VID~G~~K~~~yd~~~g~~~L~~~piS~as~~QRaGRAGR~g---~G~cyrLyt 665 (1020)
|++.|.||||+ .+++| +.+.+..+.+||+||.+|.| +|..|..-.
T Consensus 501 TQVIEagvDid-fd~mI--------------------Te~aPidSLIQR~GRv~R~g~~~~~~~~v~~~ 548 (733)
T COG1203 501 TQVIEAGVDID-FDVLI--------------------TELAPIDSLIQRAGRVNRHGKKENGKIYVYND 548 (733)
T ss_pred eeEEEEEeccc-cCeee--------------------ecCCCHHHHHHHHHHHhhcccccCCceeEeec
Confidence 99999999999 55555 35677789999999999999 355555433
No 104
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.77 E-value=3.3e-17 Score=205.09 Aligned_cols=110 Identities=14% Similarity=0.148 Sum_probs=95.1
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHHHhcC--CCeEEEEecchhhcc
Q 001722 529 PPGDILIFMTGQDEIEAACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKE--GTRKCIVATNIAETS 606 (1020)
Q Consensus 529 ~~g~ILVFl~g~~eie~l~~~L~e~l~~l~~~~~~~~~~l~vl~lhs~L~~~eq~~I~~~f~~--g~rkVIVATniaEtG 606 (1020)
.+.++||||.++..+..+.+.|.+. .++.+..+||+|+..+|.++++.|.. |..+|+|||+++++|
T Consensus 492 ~~~KvLVF~~~~~t~~~L~~~L~~~------------~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~~VLIsTdvgseG 559 (956)
T PRK04914 492 RSEKVLVICAKAATALQLEQALRER------------EGIRAAVFHEGMSIIERDRAAAYFADEEDGAQVLLCSEIGSEG 559 (956)
T ss_pred CCCeEEEEeCcHHHHHHHHHHHhhc------------cCeeEEEEECCCCHHHHHHHHHHHhcCCCCccEEEechhhccC
Confidence 4678999999999999998888532 36788999999999999999999987 469999999999999
Q ss_pred CCCCCeeEEEEcCCccceeccCCCCcccccccccCHHHHHHHhcccCCCCC---CEEEEccChhh
Q 001722 607 LTVDGIFYVIDTGYGKMKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTGP---GTCYRLYTESA 668 (1020)
Q Consensus 607 ItIp~V~~VID~G~~K~~~yd~~~g~~~L~~~piS~as~~QRaGRAGR~g~---G~cyrLyt~~~ 668 (1020)
+|++.+.+||+ || .|.++..|.||+||+||.|. -.+|.++.+..
T Consensus 560 lNlq~a~~VIn--------fD----------lP~nP~~~eQRIGR~~RiGQ~~~V~i~~~~~~~t 606 (956)
T PRK04914 560 RNFQFASHLVL--------FD----------LPFNPDLLEQRIGRLDRIGQKHDIQIHVPYLEGT 606 (956)
T ss_pred CCcccccEEEE--------ec----------CCCCHHHHHHHhcccccCCCCceEEEEEccCCCC
Confidence 99999999998 67 79999999999999999884 34566665543
No 105
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.77 E-value=2e-17 Score=201.35 Aligned_cols=107 Identities=23% Similarity=0.273 Sum_probs=92.6
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHHHhcCCCeEEEEecchhhccCC
Q 001722 529 PPGDILIFMTGQDEIEAACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAETSLT 608 (1020)
Q Consensus 529 ~~g~ILVFl~g~~eie~l~~~L~e~l~~l~~~~~~~~~~l~vl~lhs~L~~~eq~~I~~~f~~g~rkVIVATniaEtGIt 608 (1020)
.+.+|||||++.+..+.++..|.+. ++....+|+.+...++..|...+.+|. |+||||+|++|+|
T Consensus 439 ~g~pvLI~t~si~~se~ls~~L~~~-------------gi~~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGtD 503 (796)
T PRK12906 439 KGQPVLVGTVAIESSERLSHLLDEA-------------GIPHAVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGTD 503 (796)
T ss_pred CCCCEEEEeCcHHHHHHHHHHHHHC-------------CCCeeEecCCcHHHHHHHHHhcCCCce--EEEEeccccCCCC
Confidence 5789999999999999999888652 566778999999888888877777666 9999999999999
Q ss_pred C---CCee-----EEEEcCCccceeccCCCCcccccccccCHHHHHHHhcccCCCC-CCEEEEccChhh
Q 001722 609 V---DGIF-----YVIDTGYGKMKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTG-PGTCYRLYTESA 668 (1020)
Q Consensus 609 I---p~V~-----~VID~G~~K~~~yd~~~g~~~L~~~piS~as~~QRaGRAGR~g-~G~cyrLyt~~~ 668 (1020)
| ++|. +||.+. .|-|...+.||.|||||.| ||.+..+++.++
T Consensus 504 I~l~~~V~~~GGLhVI~te------------------~pes~ri~~Ql~GRtGRqG~~G~s~~~~sleD 554 (796)
T PRK12906 504 IKLGPGVKELGGLAVIGTE------------------RHESRRIDNQLRGRSGRQGDPGSSRFYLSLED 554 (796)
T ss_pred CCCCcchhhhCCcEEEeee------------------cCCcHHHHHHHhhhhccCCCCcceEEEEeccc
Confidence 9 4899 999733 6999999999999999999 799988888664
No 106
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.75 E-value=7e-17 Score=197.45 Aligned_cols=318 Identities=18% Similarity=0.158 Sum_probs=194.9
Q ss_pred HcCCCcHHHHHHHHHHHHhCCeEEEEecCCCchHHHHHHHHHHhcccCCCEEEEEcccHHHHHHHHHHHHHHhccccCCE
Q 001722 319 RQYLPIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELGDK 398 (1020)
Q Consensus 319 R~~LPi~~~q~eil~~i~~~q~vII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~lA~qva~rva~e~~~~lG~~ 398 (1020)
++.|-++++--+++-.+.=++--|..+.||+|||.++..+++-..+. +..|-++.|+..||.+.+..+... ...+|..
T Consensus 75 ~R~lg~~~~dvQlig~l~L~~G~Iaem~TGeGKTLva~lpa~l~aL~-G~~V~IvTpn~yLA~rd~e~~~~l-~~~LGls 152 (830)
T PRK12904 75 KRVLGMRHFDVQLIGGMVLHEGKIAEMKTGEGKTLVATLPAYLNALT-GKGVHVVTVNDYLAKRDAEWMGPL-YEFLGLS 152 (830)
T ss_pred HHHhCCCCCccHHHhhHHhcCCchhhhhcCCCcHHHHHHHHHHHHHc-CCCEEEEecCHHHHHHHHHHHHHH-HhhcCCe
Confidence 45566666666666666556666899999999999987777533333 334678889999999999988554 4567888
Q ss_pred EEEEEeeeec----CCCCccEEEEchHHH-HHHHhcCC-------CCCCccEEEEeCCCc------CCC--------Ccc
Q 001722 399 VGYAIRFEDV----TGPSTLIKYMTDGVL-LRETLKDS-------DLDKYRVIVMDEAHE------RSL--------STD 452 (1020)
Q Consensus 399 VGy~ir~e~~----~s~~t~I~~~T~g~L-Lr~ll~d~-------~L~~~s~IIIDEaHE------Rs~--------~tD 452 (1020)
||..+...+. ..-.++|+|+|++.| ...+...- .+..+.++|||||+. |++ ...
T Consensus 153 v~~i~~~~~~~er~~~y~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiLIDeArtpLiiSg~~~~~~ 232 (830)
T PRK12904 153 VGVILSGMSPEERREAYAADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSILIDEARTPLIISGPAEDSS 232 (830)
T ss_pred EEEEcCCCCHHHHHHhcCCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhheeccCCCceeeECCCCccc
Confidence 8865543221 112478999999999 54443221 267889999999992 221 000
Q ss_pred HHHHHHHHHHhhc-C--------C--------------------------------------------------------
Q 001722 453 VLFGILKKVVARR-R--------D-------------------------------------------------------- 467 (1020)
Q Consensus 453 ~ll~lLk~il~~r-~--------~-------------------------------------------------------- 467 (1020)
-+...+..+.... . .
T Consensus 233 ~~y~~~~~~v~~l~~~~dy~vde~~~~v~lte~G~~~~e~~~~~~~ly~~~~~~~~~~i~~AL~A~~l~~~d~dYiV~dg 312 (830)
T PRK12904 233 ELYKRANKIVPTLEKEGDYTVDEKSRTVGLTEEGIEKAEKLLGIENLYDPENIALVHHLNQALRAHELFKRDVDYIVKDG 312 (830)
T ss_pred HHHHHHHHHHHhcCCCCCeEEEcCCCeeeECHHHHHHHHHHhCCccccChhhhHHHHHHHHHHHHHHHHhcCCcEEEECC
Confidence 1222222222111 0 0
Q ss_pred -----------------------------------------------------ceEEEEeccC--CHHHHHHHhCCCCeE
Q 001722 468 -----------------------------------------------------FKLIVTSATL--NAQKFSDFFGSVPIF 492 (1020)
Q Consensus 468 -----------------------------------------------------lklIlmSATl--d~~~f~~~f~~~pvi 492 (1020)
.++.+||.|. ..+.|.+.++ .+++
T Consensus 313 ~V~ivDe~TGR~~~gr~ws~GLHQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~iY~-l~vv 391 (830)
T PRK12904 313 EVVIVDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEAEEFREIYN-LDVV 391 (830)
T ss_pred EEEEEECCCCccCCCCccchHHHHHHHHhcCCCCCCCceeeeeeeHHHHHHhcchhcccCCCcHHHHHHHHHHhC-CCEE
Confidence 1233333333 1222222221 3333
Q ss_pred eecCcccceeeeecC----CCchhHHHHHHHHHHHHhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHHHhhccccCCCCCe
Q 001722 493 HIPGRTFPVNTLYSK----TPCEDYVEAAVKQAMTIHITSPPGDILIFMTGQDEIEAACFALKERMEQLISSTTREVPEL 568 (1020)
Q Consensus 493 ~i~gr~~pV~i~y~~----~~~~dyl~~av~~~l~i~~~~~~g~ILVFl~g~~eie~l~~~L~e~l~~l~~~~~~~~~~l 568 (1020)
.||... |+...-.+ ....+...+.+..+...| ..+.++||||++.+..+.++..|.+. ++
T Consensus 392 ~IPtnk-p~~r~d~~d~i~~t~~~K~~aI~~~I~~~~--~~grpVLIft~Si~~se~Ls~~L~~~-------------gi 455 (830)
T PRK12904 392 VIPTNR-PMIRIDHPDLIYKTEKEKFDAVVEDIKERH--KKGQPVLVGTVSIEKSELLSKLLKKA-------------GI 455 (830)
T ss_pred EcCCCC-CeeeeeCCCeEEECHHHHHHHHHHHHHHHH--hcCCCEEEEeCcHHHHHHHHHHHHHC-------------CC
Confidence 333221 11110000 011223334444444444 34678999999999999999888652 56
Q ss_pred EEEEecCCCCHHHHHHHHHHhcCCCeEEEEecchhhccCCCCCe------------------------------eEEEEc
Q 001722 569 LILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAETSLTVDGI------------------------------FYVIDT 618 (1020)
Q Consensus 569 ~vl~lhs~L~~~eq~~I~~~f~~g~rkVIVATniaEtGItIp~V------------------------------~~VID~ 618 (1020)
....+||. ..+|...+..|..+...|+||||+|++|+||+== .-|...
T Consensus 456 ~~~vLnak--q~eREa~Iia~Ag~~g~VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 533 (830)
T PRK12904 456 PHNVLNAK--NHEREAEIIAQAGRPGAVTIATNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEA 533 (830)
T ss_pred ceEeccCc--hHHHHHHHHHhcCCCceEEEecccccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHc
Confidence 77789995 7788889999999999999999999999999721 111111
Q ss_pred CCccceeccCCCCcccccc-cccCHHHHHHHhcccCCCC-CCEEEEccChhh
Q 001722 619 GYGKMKVYNPKMGMDALQV-FPVSRAAADQRAGRAGRTG-PGTCYRLYTESA 668 (1020)
Q Consensus 619 G~~K~~~yd~~~g~~~L~~-~piS~as~~QRaGRAGR~g-~G~cyrLyt~~~ 668 (1020)
-|+..+.+ .+-|.--=.|-.|||||.| ||.+-.+.+-++
T Consensus 534 -----------GGLhVigTerhesrRid~QlrGRagRQGdpGss~f~lSleD 574 (830)
T PRK12904 534 -----------GGLHVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLED 574 (830)
T ss_pred -----------CCCEEEecccCchHHHHHHhhcccccCCCCCceeEEEEcCc
Confidence 12333322 4667777789999999999 798766666443
No 107
>PF04408 HA2: Helicase associated domain (HA2); InterPro: IPR007502 This presumed domain is about 90 amino acid residues in length. It is found as a diverse set of RNA helicases. Its function is unknown, however it seems likely to be involved in nucleic acid binding.; GO: 0004386 helicase activity; PDB: 3I4U_A 2XAU_B 3KX2_B.
Probab=99.73 E-value=7e-18 Score=159.33 Aligned_cols=91 Identities=55% Similarity=0.833 Sum_probs=69.4
Q ss_pred HHHHHHHHhcCccCCCCccHHHHHhhcCCCChHHHHHHhhhhccCcHHHHHHHHHHhCCCCcccCCcchHHHHH--HHHh
Q 001722 717 NSMYQLWVLGALNNVGALTDLGWKMVEFPLDPPLAKMLLMGEQLGCLDEVLTIVSMLSVPSVFFRPKDRAEESD--AARE 794 (1020)
Q Consensus 717 ~al~~L~~lgaLd~~g~LT~lG~~ma~lPldp~lak~ll~~~~~~c~~e~l~I~a~ls~~~~f~~p~~~~~~~~--~~r~ 794 (1020)
+|++.|+.+||||++|+||++|+.|+.||++|++||||+.|..+||++++++|||+||++++|..|.+..+..+ ..+.
T Consensus 1 ~A~~~L~~Lgald~~~~lT~lG~~~~~lPl~p~~a~~Ll~~~~~~~~~~~~~iaa~ls~~~~f~~~~~~~~~~~~~~~~~ 80 (102)
T PF04408_consen 1 KALELLKSLGALDENGNLTPLGRKMSQLPLDPRLAKMLLYGIQFGCLDEALIIAAILSVRSPFINPDDKEENAEQDNAKK 80 (102)
T ss_dssp -HHHHHHHTTSB-TTS-B-HHHHHHTTSSS-HHHHHHHHHHHHCT-HHHHHHHHHHHTSS--B---CCGHHHHHH--HHH
T ss_pred CHHHHHHHCCCCCCCCCcCHHHHHHHHCCCchHhHhHhhhccccccHHHHHHHHHHHcCCCcccCccHHHHHHHHHHHHH
Confidence 48899999999999999999999999999999999999999999999999999999999999999865544332 3444
Q ss_pred hh---------ccCCCcHHHHH
Q 001722 795 KF---------FVQESDHLTLL 807 (1020)
Q Consensus 795 ~f---------~~~~sDhltll 807 (1020)
+| ....|||+|+|
T Consensus 81 ~~~~~~~~~~~~~~~sDhltlL 102 (102)
T PF04408_consen 81 KFRIKQARKKFSDDESDHLTLL 102 (102)
T ss_dssp TT----------BTTBHHHHHH
T ss_pred HhhhhhcccccCCCCCCHHhcC
Confidence 44 67899999997
No 108
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.70 E-value=1.3e-15 Score=181.89 Aligned_cols=162 Identities=22% Similarity=0.228 Sum_probs=114.1
Q ss_pred CCcHHHHHHHHHHHHhCCeEEEEecCCCchHHHHHHHHHHhccc--CCCEEEEEcccHHHHHHHHHHHHHHhccc-c--C
Q 001722 322 LPIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYT--TNGIVGCTQPRRVAAMSVAKRVSEEMDTE-L--G 396 (1020)
Q Consensus 322 LPi~~~q~eil~~i~~~q~vII~gpTGSGKTtqi~q~Lle~~~~--~~~~Il~tqPrR~lA~qva~rva~e~~~~-l--G 396 (1020)
+--..+|.+.+..+..|..++|+|||.+|||.+-+ |+.+..+. ..+.|+++.|+++++.|++..|...+... + |
T Consensus 510 F~Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfisf-Y~iEKVLResD~~VVIyvaPtKaLVnQvsa~VyaRF~~~t~~rg 588 (1330)
T KOG0949|consen 510 FCPDEWQRELLDSVDRNESAVIVAPTSAGKTFISF-YAIEKVLRESDSDVVIYVAPTKALVNQVSANVYARFDTKTFLRG 588 (1330)
T ss_pred cCCcHHHHHHhhhhhcccceEEEeeccCCceeccH-HHHHHHHhhcCCCEEEEecchHHHhhhhhHHHHHhhccCccccc
Confidence 55678999999999999999999999999987654 44454433 35689999999999999998887666322 1 1
Q ss_pred CEE-EEEEeeeecCCCCccEEEEchHHHHHHHhcCC----CCCCccEEEEeCCCcCCCCccHHHHHHHHHHhhcCCceEE
Q 001722 397 DKV-GYAIRFEDVTGPSTLIKYMTDGVLLRETLKDS----DLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLI 471 (1020)
Q Consensus 397 ~~V-Gy~ir~e~~~s~~t~I~~~T~g~LLr~ll~d~----~L~~~s~IIIDEaHERs~~tD~ll~lLk~il~~r~~lklI 471 (1020)
..+ |--.+--....-+++|+++-|+.|-..++..| ...++.+||+||+|.-+-.-|- ++...+-..-.+.+|
T Consensus 589 ~sl~g~ltqEYsinp~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~---l~~Eqll~li~CP~L 665 (1330)
T KOG0949|consen 589 VSLLGDLTQEYSINPWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDG---LLWEQLLLLIPCPFL 665 (1330)
T ss_pred hhhHhhhhHHhcCCchhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccc---hHHHHHHHhcCCCee
Confidence 111 10001111112368999999998877776643 4778999999999965444332 222222223367899
Q ss_pred EEeccC-CHHHHHHHhC
Q 001722 472 VTSATL-NAQKFSDFFG 487 (1020)
Q Consensus 472 lmSATl-d~~~f~~~f~ 487 (1020)
++|||+ |++.|..|++
T Consensus 666 ~LSATigN~~l~qkWln 682 (1330)
T KOG0949|consen 666 VLSATIGNPNLFQKWLN 682 (1330)
T ss_pred EEecccCCHHHHHHHHH
Confidence 999999 8999999986
No 109
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.69 E-value=1.3e-15 Score=186.17 Aligned_cols=124 Identities=18% Similarity=0.097 Sum_probs=90.7
Q ss_pred HcCCCcHHHHHHHHHHHHhCCeEEEEecCCCchHHHHHHHHHHhcccCCCEEEEEcccHHHHHHHHHHHHHHhccccCCE
Q 001722 319 RQYLPIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELGDK 398 (1020)
Q Consensus 319 R~~LPi~~~q~eil~~i~~~q~vII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~lA~qva~rva~e~~~~lG~~ 398 (1020)
|+.|-+.++--+++-.+.-++--|..++||.|||+++..+++...+.. ..|.|+.|++.||.+.+..+...+. .+|..
T Consensus 76 ~R~lgm~~ydVQliGgl~L~~G~IaEm~TGEGKTL~a~lp~~l~al~g-~~VhIvT~ndyLA~RD~e~m~~l~~-~lGls 153 (908)
T PRK13107 76 KRVFEMRHFDVQLLGGMVLDSNRIAEMRTGEGKTLTATLPAYLNALTG-KGVHVITVNDYLARRDAENNRPLFE-FLGLT 153 (908)
T ss_pred HHHhCCCcCchHHhcchHhcCCccccccCCCCchHHHHHHHHHHHhcC-CCEEEEeCCHHHHHHHHHHHHHHHH-hcCCe
Confidence 556667666667777777777779999999999999888887766653 3488888999999999988865443 47888
Q ss_pred EEEEEeeee----cCCCCccEEEEchHHH-HHHHhcCC--------CCCCccEEEEeCCC
Q 001722 399 VGYAIRFED----VTGPSTLIKYMTDGVL-LRETLKDS--------DLDKYRVIVMDEAH 445 (1020)
Q Consensus 399 VGy~ir~e~----~~s~~t~I~~~T~g~L-Lr~ll~d~--------~L~~~s~IIIDEaH 445 (1020)
||..+...+ ...-.++|+|+|++.| +..+ .|. ....+.++|||||+
T Consensus 154 v~~i~~~~~~~~r~~~Y~~dI~YgT~~e~gfDyL-rdnm~~~~~~~vqr~~~~aIvDEvD 212 (908)
T PRK13107 154 VGINVAGLGQQEKKAAYNADITYGTNNEFGFDYL-RDNMAFSPQERVQRPLHYALIDEVD 212 (908)
T ss_pred EEEecCCCCHHHHHhcCCCCeEEeCCCcccchhh-hccCccchhhhhccccceeeecchh
Confidence 886433221 1112679999999998 4433 332 13678899999999
No 110
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.67 E-value=4.7e-16 Score=157.96 Aligned_cols=155 Identities=24% Similarity=0.245 Sum_probs=112.1
Q ss_pred HHHHHHHHHHHhCCeEEEEecCCCchHHHHHHHHHHhcccC-CCEEEEEcccHHHHHHHHHHHHHHhccccCCEEEEEEe
Q 001722 326 SVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTT-NGIVGCTQPRRVAAMSVAKRVSEEMDTELGDKVGYAIR 404 (1020)
Q Consensus 326 ~~q~eil~~i~~~q~vII~gpTGSGKTtqi~q~Lle~~~~~-~~~Il~tqPrR~lA~qva~rva~e~~~~lG~~VGy~ir 404 (1020)
++|.++++.+.++++++|+||||||||+++..+++...... ...++++.|+++++.+++.++...+.. .+..+.....
T Consensus 2 ~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~-~~~~~~~~~~ 80 (169)
T PF00270_consen 2 PLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEGKDARVLIIVPTRALAEQQFERLRKFFSN-TNVRVVLLHG 80 (169)
T ss_dssp HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTTSSSEEEEEESSHHHHHHHHHHHHHHTTT-TTSSEEEEST
T ss_pred HHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccCCCceEEEEeecccccccccccccccccc-cccccccccc
Confidence 68999999999999999999999999999998888776554 349999999999999999999766554 2222222111
Q ss_pred eee-------cCCCCccEEEEchHHHHHHHhcC-CCCCCccEEEEeCCCcCCCC--ccHHHHHHHHHHhhcCCceEEEEe
Q 001722 405 FED-------VTGPSTLIKYMTDGVLLRETLKD-SDLDKYRVIVMDEAHERSLS--TDVLFGILKKVVARRRDFKLIVTS 474 (1020)
Q Consensus 405 ~e~-------~~s~~t~I~~~T~g~LLr~ll~d-~~L~~~s~IIIDEaHERs~~--tD~ll~lLk~il~~r~~lklIlmS 474 (1020)
... .......|+++|++.|+..+... ..+.++++|||||+|..... .+.+..++.. +...++.++|+||
T Consensus 81 ~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~-~~~~~~~~~i~~S 159 (169)
T PF00270_consen 81 GQSISEDQREVLSNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSDETFRAMLKSILRR-LKRFKNIQIILLS 159 (169)
T ss_dssp TSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHTTHHHHHHHHHHH-SHTTTTSEEEEEE
T ss_pred cccccccccccccccccccccCcchhhccccccccccccceeeccCcccccccccHHHHHHHHHHH-hcCCCCCcEEEEe
Confidence 111 11236899999999999887653 24566999999999964442 1222223333 2233478999999
Q ss_pred ccCCHHHHH
Q 001722 475 ATLNAQKFS 483 (1020)
Q Consensus 475 ATld~~~f~ 483 (1020)
||+. ..+.
T Consensus 160 AT~~-~~~~ 167 (169)
T PF00270_consen 160 ATLP-SNVE 167 (169)
T ss_dssp SSST-HHHH
T ss_pred eCCC-hhHh
Confidence 9997 5443
No 111
>smart00847 HA2 Helicase associated domain (HA2) Add an annotation. This presumed domain is about 90 amino acid residues in length. It is found is a diverse set of RNA helicases. Its function is unknown, however it seems likely to be involved in nucleic acid binding.
Probab=99.65 E-value=3.2e-16 Score=144.83 Aligned_cols=90 Identities=59% Similarity=0.891 Sum_probs=81.1
Q ss_pred HHHHHHHHhcCccCCCCccHHHHHhhcCCCChHHHHHHhhhhcc-CcHHHHHHHHHHhCCCCcccCCcchHHHHHHHHhh
Q 001722 717 NSMYQLWVLGALNNVGALTDLGWKMVEFPLDPPLAKMLLMGEQL-GCLDEVLTIVSMLSVPSVFFRPKDRAEESDAAREK 795 (1020)
Q Consensus 717 ~al~~L~~lgaLd~~g~LT~lG~~ma~lPldp~lak~ll~~~~~-~c~~e~l~I~a~ls~~~~f~~p~~~~~~~~~~r~~ 795 (1020)
+|++.|+.+||||.+|+||++|+.|+.||++|++||||+.|+.+ +|.+++++|+|++++.++|..| ....+....+..
T Consensus 1 ~A~~~L~~LgAld~~~~lT~lG~~m~~lPl~Prla~~Ll~a~~~~~c~~~~~~i~a~ls~~~~~~~~-~~~~~~~~~~~~ 79 (92)
T smart00847 1 AALELLYELGALDDDGRLTPLGRKMAELPLDPRLAKMLLAAAELFGCLDEILTIAAMLSVGDPFPRP-EKRAEADAARRR 79 (92)
T ss_pred CHHHHHHHCCCcCCCCCcCHHHHHHHHCCCChHHHHHHHHHHhhcCcHHHHHHHHHHhcCCCCcCCc-hHHHHHHHHHHH
Confidence 37899999999999999999999999999999999999999999 9999999999999999999877 445556667778
Q ss_pred hccC-CCcHHHHH
Q 001722 796 FFVQ-ESDHLTLL 807 (1020)
Q Consensus 796 f~~~-~sDhltll 807 (1020)
|... .|||++++
T Consensus 80 ~~~~~~~D~~~~l 92 (92)
T smart00847 80 FASGRESDHLTLL 92 (92)
T ss_pred ccCCCCCChhhhC
Confidence 8887 89999874
No 112
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.65 E-value=1.6e-14 Score=176.72 Aligned_cols=123 Identities=16% Similarity=0.089 Sum_probs=94.2
Q ss_pred CCC--cHHHHHHHHHHHHhCCeEEEEecCCCchHHHHHHHHHHhcccCCCEEEEEcccHHHHHHHHHHHHHHhccccCCE
Q 001722 321 YLP--IFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELGDK 398 (1020)
Q Consensus 321 ~LP--i~~~q~eil~~i~~~q~vII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~lA~qva~rva~e~~~~lG~~ 398 (1020)
..| +.++|.+++..+..++.+|..++||+|||+++..+++...+.. ..++++.|++.||.+++..+.. +...+|..
T Consensus 88 ~~p~~~tp~qvQ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL~g-~~v~IVTpTrELA~Qdae~m~~-L~k~lGLs 165 (970)
T PRK12899 88 HQQWDMVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNALTG-KPVHLVTVNDYLAQRDCEWVGS-VLRWLGLT 165 (970)
T ss_pred cCCCCCChHHHHHhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHHhhc-CCeEEEeCCHHHHHHHHHHHHH-HHhhcCCe
Confidence 346 8999999999999999999999999999999998888766543 3477888999999999988744 44556777
Q ss_pred EEEEEeeeecC----CCCccEEEEchHHH-HHHHhcCC-CC-------CCccEEEEeCCC
Q 001722 399 VGYAIRFEDVT----GPSTLIKYMTDGVL-LRETLKDS-DL-------DKYRVIVMDEAH 445 (1020)
Q Consensus 399 VGy~ir~e~~~----s~~t~I~~~T~g~L-Lr~ll~d~-~L-------~~~s~IIIDEaH 445 (1020)
||..+...+.. .-.++|+|+|||.| +..+.... .+ ..+.++|||||+
T Consensus 166 V~~i~GG~~~~eq~~~y~~DIVygTPgRLgfDyLrd~~~~~~~~~~vqr~~~~~IIDEAD 225 (970)
T PRK12899 166 TGVLVSGSPLEKRKEIYQCDVVYGTASEFGFDYLRDNSIATRKEEQVGRGFYFAIIDEVD 225 (970)
T ss_pred EEEEeCCCCHHHHHHHcCCCEEEECCChhHHHHhhCCCCCcCHHHhhcccccEEEEechh
Confidence 77654433211 12578999999999 66654431 22 356899999999
No 113
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=99.64 E-value=1.2e-15 Score=168.84 Aligned_cols=268 Identities=19% Similarity=0.219 Sum_probs=178.8
Q ss_pred CEEEEEcccHHHHHHHHHHHHHHhcccc-----C--CEEEEEEeeee---cCCCCccEEEEchHHHHHHHhcC-CCCCCc
Q 001722 368 GIVGCTQPRRVAAMSVAKRVSEEMDTEL-----G--DKVGYAIRFED---VTGPSTLIKYMTDGVLLRETLKD-SDLDKY 436 (1020)
Q Consensus 368 ~~Il~tqPrR~lA~qva~rva~e~~~~l-----G--~~VGy~ir~e~---~~s~~t~I~~~T~g~LLr~ll~d-~~L~~~ 436 (1020)
...+++.|.|++|.|+...+.+ +...+ - ..+| ++.... .....++|++.|+|.|+..+... -.|.++
T Consensus 287 p~avivepsrelaEqt~N~i~~-Fk~h~~np~~r~lLmig-gv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~g~~~lt~c 364 (725)
T KOG0349|consen 287 PEAVIVEPSRELAEQTHNQIEE-FKMHTSNPEVRSLLMIG-GVLKRTQCKQLKDGTHIVVGTPGRLLQPISKGLVTLTHC 364 (725)
T ss_pred cceeEecCcHHHHHHHHhhHHH-HHhhcCChhhhhhhhhh-hHHhHHHHHHhhcCceeeecCchhhhhhhhccceeeeee
Confidence 4688899999999999997743 33221 1 0111 122222 22457999999999999887653 357889
Q ss_pred cEEEEeCCCc--CCCCccHHHHHHHHHH---hhcCCceEEEEeccC---CHHHHHHHhCCCCe-EeecC------cccce
Q 001722 437 RVIVMDEAHE--RSLSTDVLFGILKKVV---ARRRDFKLIVTSATL---NAQKFSDFFGSVPI-FHIPG------RTFPV 501 (1020)
Q Consensus 437 s~IIIDEaHE--Rs~~tD~ll~lLk~il---~~r~~lklIlmSATl---d~~~f~~~f~~~pv-i~i~g------r~~pV 501 (1020)
.++++||++- -..++|++..+...+- ..-..++.++.|||+ ++.++.+-...-|. +...| ..+.|
T Consensus 365 rFlvlDead~lL~qgy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkgeD~vpetvHhv 444 (725)
T KOG0349|consen 365 RFLVLDEADLLLGQGYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKGEDLVPETVHHV 444 (725)
T ss_pred EEEEecchhhhhhcccHHHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhhhccCceeEecccccccchhhccc
Confidence 9999999994 2245566555544443 333458999999999 55556544332221 11111 11111
Q ss_pred eeeecC-----------------CCchhH----------HHHHHHHH-----HHHhhcCCCCCEEEEcCCHHHHHHHHHH
Q 001722 502 NTLYSK-----------------TPCEDY----------VEAAVKQA-----MTIHITSPPGDILIFMTGQDEIEAACFA 549 (1020)
Q Consensus 502 ~i~y~~-----------------~~~~dy----------l~~av~~~-----l~i~~~~~~g~ILVFl~g~~eie~l~~~ 549 (1020)
.....+ .+..|+ ...+++.. +.......-.+.+|||.++.+|+.+-..
T Consensus 445 v~lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h~mdkaiifcrtk~dcDnLer~ 524 (725)
T KOG0349|consen 445 VKLVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRRHAMDKAIIFCRTKQDCDNLERM 524 (725)
T ss_pred eeecCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhhhccCceEEEEeccccchHHHHH
Confidence 110000 000111 11111110 0000112346789999999999988877
Q ss_pred HHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHHHhcCCCeEEEEecchhhccCCCCCeeEEEEcCCccceeccCC
Q 001722 550 LKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAETSLTVDGIFYVIDTGYGKMKVYNPK 629 (1020)
Q Consensus 550 L~e~l~~l~~~~~~~~~~l~vl~lhs~L~~~eq~~I~~~f~~g~rkVIVATniaEtGItIp~V~~VID~G~~K~~~yd~~ 629 (1020)
+.++ ....+.++.+|+...+++|+.-++.|+.+..+.+|||++|++||||.++-|+|+.
T Consensus 525 ~~qk----------gg~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g~p~~inv----------- 583 (725)
T KOG0349|consen 525 MNQK----------GGKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITGLPFMINV----------- 583 (725)
T ss_pred HHHc----------CCccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccccCCceEEEE-----------
Confidence 7653 3457899999999999999999999999999999999999999999999999983
Q ss_pred CCcccccccccCHHHHHHHhcccCCCCC-CEEEEccC
Q 001722 630 MGMDALQVFPVSRAAADQRAGRAGRTGP-GTCYRLYT 665 (1020)
Q Consensus 630 ~g~~~L~~~piS~as~~QRaGRAGR~g~-G~cyrLyt 665 (1020)
+.|-.+.+|.||+||.||... |.++.|..
T Consensus 584 -------tlpd~k~nyvhrigrvgraermglaislva 613 (725)
T KOG0349|consen 584 -------TLPDDKTNYVHRIGRVGRAERMGLAISLVA 613 (725)
T ss_pred -------ecCcccchhhhhhhccchhhhcceeEEEee
Confidence 368899999999999999875 88777753
No 114
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=99.63 E-value=7.4e-15 Score=167.72 Aligned_cols=274 Identities=22% Similarity=0.248 Sum_probs=174.6
Q ss_pred CCeEEEEecCCCchHHHHHHHHHHhcccCCCEEEEEcccHHHHHHHHHHHHHHhccccCCEEEEEEeeeecCCCCccEEE
Q 001722 338 NQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELGDKVGYAIRFEDVTGPSTLIKY 417 (1020)
Q Consensus 338 ~q~vII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~lA~qva~rva~e~~~~lG~~VGy~ir~e~~~s~~t~I~~ 417 (1020)
.+++.-+|||.||||.-++|-+.+. ..-++.-|.|.||.+|+.|+ .+.|....-..|--.++..-.+.....+-
T Consensus 191 RkIi~H~GPTNSGKTy~ALqrl~~a-----ksGvycGPLrLLA~EV~~r~-na~gipCdL~TGeE~~~~~~~~~~a~hvS 264 (700)
T KOG0953|consen 191 RKIIMHVGPTNSGKTYRALQRLKSA-----KSGVYCGPLRLLAHEVYDRL-NALGIPCDLLTGEERRFVLDNGNPAQHVS 264 (700)
T ss_pred heEEEEeCCCCCchhHHHHHHHhhh-----ccceecchHHHHHHHHHHHh-hhcCCCccccccceeeecCCCCCcccceE
Confidence 3457789999999999998877654 23456679999999999999 44554433333333333322233456677
Q ss_pred EchHHHHHHHhcCCCCCCccEEEEeCCCc-----CCC-CccHHHHHHHHHHhhcCCceEEEEeccCC-HHHHHHHhCCCC
Q 001722 418 MTDGVLLRETLKDSDLDKYRVIVMDEAHE-----RSL-STDVLFGILKKVVARRRDFKLIVTSATLN-AQKFSDFFGSVP 490 (1020)
Q Consensus 418 ~T~g~LLr~ll~d~~L~~~s~IIIDEaHE-----Rs~-~tD~ll~lLk~il~~r~~lklIlmSATld-~~~f~~~f~~~p 490 (1020)
||-+|. +.-..|++.||||++. |+. +|-.|+|+..+-+..-.+ -|-++ +.++.+-
T Consensus 265 cTVEM~-------sv~~~yeVAViDEIQmm~Dp~RGwAWTrALLGl~AdEiHLCGe------psvldlV~~i~k~----- 326 (700)
T KOG0953|consen 265 CTVEMV-------SVNTPYEVAVIDEIQMMRDPSRGWAWTRALLGLAADEIHLCGE------PSVLDLVRKILKM----- 326 (700)
T ss_pred EEEEEe-------ecCCceEEEEehhHHhhcCcccchHHHHHHHhhhhhhhhccCC------chHHHHHHHHHhh-----
Confidence 888776 2345789999999983 443 244566665554333222 12222 2233322
Q ss_pred eEeecCcccceeeeecCCCchhHHHHHHHHHHHHhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHHHhhccccCCCCCeEE
Q 001722 491 IFHIPGRTFPVNTLYSKTPCEDYVEAAVKQAMTIHITSPPGDILIFMTGQDEIEAACFALKERMEQLISSTTREVPELLI 570 (1020)
Q Consensus 491 vi~i~gr~~pV~i~y~~~~~~dyl~~av~~~l~i~~~~~~g~ILVFl~g~~eie~l~~~L~e~l~~l~~~~~~~~~~l~v 570 (1020)
.|....|..+-.-.|. .++. .++.-...-.+|+++|-+ ++.+|-.+...+.+. ....+
T Consensus 327 ----TGd~vev~~YeRl~pL--~v~~---~~~~sl~nlk~GDCvV~F-Skk~I~~~k~kIE~~------------g~~k~ 384 (700)
T KOG0953|consen 327 ----TGDDVEVREYERLSPL--VVEE---TALGSLSNLKPGDCVVAF-SKKDIFTVKKKIEKA------------GNHKC 384 (700)
T ss_pred ----cCCeeEEEeecccCcc--eehh---hhhhhhccCCCCCeEEEe-ehhhHHHHHHHHHHh------------cCcce
Confidence 2333222222111111 0111 112222233578887754 678888887777653 34558
Q ss_pred EEecCCCCHHHHHHHHHHhcC--CCeEEEEecchhhccCCCCCeeEEEEcCCccceeccCCCCcccccccccCHHHHHHH
Q 001722 571 LPIYSQLPADLQAKIFEKAKE--GTRKCIVATNIAETSLTVDGIFYVIDTGYGKMKVYNPKMGMDALQVFPVSRAAADQR 648 (1020)
Q Consensus 571 l~lhs~L~~~eq~~I~~~f~~--g~rkVIVATniaEtGItIp~V~~VID~G~~K~~~yd~~~g~~~L~~~piS~as~~QR 648 (1020)
..+||+||++.|..--..|.+ +..+|+|||+...+|+|+. |+-||-+ .-...+.-.+.+++.+++.|-
T Consensus 385 aVIYGsLPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL~-IrRiiF~---------sl~Kysg~e~~~it~sqikQI 454 (700)
T KOG0953|consen 385 AVIYGSLPPETRLAQAALFNDPSNECDVLVASDAIGMGLNLN-IRRIIFY---------SLIKYSGRETEDITVSQIKQI 454 (700)
T ss_pred EEEecCCCCchhHHHHHHhCCCCCccceEEeecccccccccc-eeEEEEe---------ecccCCcccceeccHHHHHHH
Confidence 889999999977665556644 8899999999999999998 7777732 223333456689999999999
Q ss_pred hcccCCCC----CCEEEEccChh
Q 001722 649 AGRAGRTG----PGTCYRLYTES 667 (1020)
Q Consensus 649 aGRAGR~g----~G~cyrLyt~~ 667 (1020)
+|||||.| .|.+-.|+.+.
T Consensus 455 AGRAGRf~s~~~~G~vTtl~~eD 477 (700)
T KOG0953|consen 455 AGRAGRFGSKYPQGEVTTLHSED 477 (700)
T ss_pred hhcccccccCCcCceEEEeeHhh
Confidence 99999998 38888887764
No 115
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.62 E-value=3.3e-15 Score=156.41 Aligned_cols=274 Identities=18% Similarity=0.230 Sum_probs=165.6
Q ss_pred cHHHHHHHHHHHHhCCeEEEEecCCCchHHHHHHHHHHhcccCCC--EEEEEcccHHHHHHHHHH---HHHHhccccCCE
Q 001722 324 IFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNG--IVGCTQPRRVAAMSVAKR---VSEEMDTELGDK 398 (1020)
Q Consensus 324 i~~~q~eil~~i~~~q~vII~gpTGSGKTtqi~q~Lle~~~~~~~--~Il~tqPrR~lA~qva~r---va~e~~~~lG~~ 398 (1020)
...+|.+.|....-+-+|+..|..|-|||..+...-+.....-.| .++|++.+|+||-|+.+. +++.|.. +.-.
T Consensus 65 psevqhecipqailgmdvlcqaksgmgktavfvl~tlqqiepv~g~vsvlvmchtrelafqi~~ey~rfskymP~-vkva 143 (387)
T KOG0329|consen 65 PSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVDGQVSVLVMCHTRELAFQISKEYERFSKYMPS-VKVS 143 (387)
T ss_pred chHhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhcCCCCCeEEEEEEeccHHHHHHHHHHHHHHHhhCCC-ceEE
Confidence 456788888777778999999999999999877766665443334 678889999999999764 4444431 1111
Q ss_pred EEE---EEeeee-cCCCCccEEEEchHHHHHHHhcC-CCCCCccEEEEeCCCcCCCCccHHHHHHHHHHh-hcCCceEEE
Q 001722 399 VGY---AIRFED-VTGPSTLIKYMTDGVLLRETLKD-SDLDKYRVIVMDEAHERSLSTDVLFGILKKVVA-RRRDFKLIV 472 (1020)
Q Consensus 399 VGy---~ir~e~-~~s~~t~I~~~T~g~LLr~ll~d-~~L~~~s~IIIDEaHERs~~tD~ll~lLk~il~-~r~~lklIl 472 (1020)
|=| .|.-+. ......+|++.|||.++....+. ..|.++.++|+|||+..--..|.--.+ ..+.. ...+-++..
T Consensus 144 VFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~k~l~lk~vkhFvlDEcdkmle~lDMrRDv-QEifr~tp~~KQvmm 222 (387)
T KOG0329|consen 144 VFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRNRSLNLKNVKHFVLDECDKMLEQLDMRRDV-QEIFRMTPHEKQVMM 222 (387)
T ss_pred EEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHhccCchhhcceeehhhHHHHHHHHHHHHHH-HHHhhcCcccceeee
Confidence 111 222111 11235689999999998776554 358999999999999321112211111 11222 234678999
Q ss_pred EeccCC--HHHHHHHhCCCCeEe-ecCc----ccceeeeecCCCchhHHHHHHHHHHHHhhcCCCCCEEEEcCCHHHHHH
Q 001722 473 TSATLN--AQKFSDFFGSVPIFH-IPGR----TFPVNTLYSKTPCEDYVEAAVKQAMTIHITSPPGDILIFMTGQDEIEA 545 (1020)
Q Consensus 473 mSATld--~~~f~~~f~~~pvi~-i~gr----~~pV~i~y~~~~~~dyl~~av~~~l~i~~~~~~g~ILVFl~g~~eie~ 545 (1020)
+|||+. ....+.-|...|+-. +... .+-+..+|.+-.... -...+...+. ...-.+++||+.+...
T Consensus 223 fsatlskeiRpvC~kFmQdPmEi~vDdE~KLtLHGLqQ~YvkLke~e-KNrkl~dLLd---~LeFNQVvIFvKsv~R--- 295 (387)
T KOG0329|consen 223 FSATLSKEIRPVCHKFMQDPMEIFVDDEAKLTLHGLQQYYVKLKENE-KNRKLNDLLD---VLEFNQVVIFVKSVQR--- 295 (387)
T ss_pred eeeecchhhHHHHHhhhcCchhhhccchhhhhhhhHHHHHHhhhhhh-hhhhhhhhhh---hhhhcceeEeeehhhh---
Confidence 999994 445555454333211 1000 011111111100000 0000000110 1112445555533221
Q ss_pred HHHHHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHHHhcCCCeEEEEecchhhccCCCCCeeEEEEcCCcccee
Q 001722 546 ACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAETSLTVDGIFYVIDTGYGKMKV 625 (1020)
Q Consensus 546 l~~~L~e~l~~l~~~~~~~~~~l~vl~lhs~L~~~eq~~I~~~f~~g~rkVIVATniaEtGItIp~V~~VID~G~~K~~~ 625 (1020)
.. | .+| +|||+++.+|+||..|+.|+|
T Consensus 296 --------------------------------------l~---f--~kr--~vat~lfgrgmdiervNi~~N-------- 322 (387)
T KOG0329|consen 296 --------------------------------------LS---F--QKR--LVATDLFGRGMDIERVNIVFN-------- 322 (387)
T ss_pred --------------------------------------hh---h--hhh--hHHhhhhccccCcccceeeec--------
Confidence 01 2 123 899999999999999999999
Q ss_pred ccCCCCcccccccccCHHHHHHHhcccCCCCC-CEEEEccChhhH
Q 001722 626 YNPKMGMDALQVFPVSRAAADQRAGRAGRTGP-GTCYRLYTESAY 669 (1020)
Q Consensus 626 yd~~~g~~~L~~~piS~as~~QRaGRAGR~g~-G~cyrLyt~~~~ 669 (1020)
|| .|-+..+|.||.|||||.|. |.++.+.+.+.-
T Consensus 323 Yd----------mp~~~DtYlHrv~rAgrfGtkglaitfvs~e~d 357 (387)
T KOG0329|consen 323 YD----------MPEDSDTYLHRVARAGRFGTKGLAITFVSDEND 357 (387)
T ss_pred cC----------CCCCchHHHHHhhhhhccccccceeehhcchhh
Confidence 66 79999999999999999995 999988876543
No 116
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.62 E-value=1.4e-14 Score=152.32 Aligned_cols=155 Identities=20% Similarity=0.171 Sum_probs=109.6
Q ss_pred CCCcHHHHHHHHHHHHhCCeEEEEecCCCchHHHHHHHHHHhcccC----CCEEEEEcccHHHHHHHHHHHHHHhccccC
Q 001722 321 YLPIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTT----NGIVGCTQPRRVAAMSVAKRVSEEMDTELG 396 (1020)
Q Consensus 321 ~LPi~~~q~eil~~i~~~q~vII~gpTGSGKTtqi~q~Lle~~~~~----~~~Il~tqPrR~lA~qva~rva~e~~~~lG 396 (1020)
.-.++++|.++++.+.+++++++++|||+|||..+..+++...... +.+++++.|++.++.|++..+... ....+
T Consensus 19 ~~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~L~~q~~~~~~~~-~~~~~ 97 (203)
T cd00268 19 FEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRELALQIAEVARKL-GKHTN 97 (203)
T ss_pred CCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHHHHHHHHHHHHHH-hccCC
Confidence 3347899999999999999999999999999999878777765543 458999999999999999888553 32223
Q ss_pred CEEEEEEeeee------cCCCCccEEEEchHHHHHHHhcC-CCCCCccEEEEeCCCcCCCCccHHHHHHHHHH-hhcCCc
Q 001722 397 DKVGYAIRFED------VTGPSTLIKYMTDGVLLRETLKD-SDLDKYRVIVMDEAHERSLSTDVLFGILKKVV-ARRRDF 468 (1020)
Q Consensus 397 ~~VGy~ir~e~------~~s~~t~I~~~T~g~LLr~ll~d-~~L~~~s~IIIDEaHERs~~tD~ll~lLk~il-~~r~~l 468 (1020)
..++....... ....+..|+++|++.|++.+... ..+.++++||+||+|.-. +..+. ..+..+. ...++.
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h~~~-~~~~~-~~~~~~~~~l~~~~ 175 (203)
T cd00268 98 LKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADRML-DMGFE-DQIREILKLLPKDR 175 (203)
T ss_pred ceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeChHHhh-ccChH-HHHHHHHHhCCccc
Confidence 33332111111 11236789999999998877654 347889999999999522 22221 1122222 234478
Q ss_pred eEEEEeccCC
Q 001722 469 KLIVTSATLN 478 (1020)
Q Consensus 469 klIlmSATld 478 (1020)
+++++|||+.
T Consensus 176 ~~~~~SAT~~ 185 (203)
T cd00268 176 QTLLFSATMP 185 (203)
T ss_pred EEEEEeccCC
Confidence 9999999995
No 117
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.60 E-value=3.5e-14 Score=172.62 Aligned_cols=309 Identities=17% Similarity=0.217 Sum_probs=189.4
Q ss_pred CCCcHHHHHHHHHHHHhC----CeEEEEecCCCchHHHHHHHHHHhcccCCCEEEEEcccHHHHHHHHHHHHHHhccccC
Q 001722 321 YLPIFSVRDELLQVIREN----QVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELG 396 (1020)
Q Consensus 321 ~LPi~~~q~eil~~i~~~----q~vII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~lA~qva~rva~e~~~~lG 396 (1020)
.+.+...|..+.+.|... +..++.|-||||||.++.+.+.+. +..++.++++.|-..+.-|+..|+...||..++
T Consensus 196 ~~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~-L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~ 274 (730)
T COG1198 196 WLALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKV-LAQGKQVLVLVPEIALTPQLLARFKARFGAKVA 274 (730)
T ss_pred ccccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHH-HHcCCEEEEEeccccchHHHHHHHHHHhCCChh
Confidence 355667777788877665 789999999999999998876665 445789999999999999999999988885543
Q ss_pred CEEEE---EEeee---ecCCCCccEEEEchHHHHHHHhcCCCCCCccEEEEeCCCcCCCCccH-HHHHHHH---HHhhcC
Q 001722 397 DKVGY---AIRFE---DVTGPSTLIKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDV-LFGILKK---VVARRR 466 (1020)
Q Consensus 397 ~~VGy---~ir~e---~~~s~~t~I~~~T~g~LLr~ll~d~~L~~~s~IIIDEaHERs~~tD~-ll~lLk~---il~~r~ 466 (1020)
..-.. +-+.+ ...+...+|++.|---|. .-+.++++|||||-|+-+.-.+- ..--.++ ......
T Consensus 275 vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAlF------~Pf~~LGLIIvDEEHD~sYKq~~~prYhARdvA~~Ra~~~ 348 (730)
T COG1198 275 VLHSGLSPGERYRVWRRARRGEARVVIGTRSALF------LPFKNLGLIIVDEEHDSSYKQEDGPRYHARDVAVLRAKKE 348 (730)
T ss_pred hhcccCChHHHHHHHHHHhcCCceEEEEechhhc------CchhhccEEEEeccccccccCCcCCCcCHHHHHHHHHHHh
Confidence 21110 11111 123456778888754432 23788999999999975544331 0011111 122335
Q ss_pred CceEEEEeccCCHHHHHHHhCC-CCeEeecCccc---c--eeeeecCCC-------chhHHHHHHHHHHHHhhcCCCCCE
Q 001722 467 DFKLIVTSATLNAQKFSDFFGS-VPIFHIPGRTF---P--VNTLYSKTP-------CEDYVEAAVKQAMTIHITSPPGDI 533 (1020)
Q Consensus 467 ~lklIlmSATld~~~f~~~f~~-~pvi~i~gr~~---p--V~i~y~~~~-------~~dyl~~av~~~l~i~~~~~~g~I 533 (1020)
+..+|+-|||+..+.+.....+ ...+.+..|.. + +.+...+.. ....+-.++...+. .+.++
T Consensus 349 ~~pvvLgSATPSLES~~~~~~g~y~~~~L~~R~~~a~~p~v~iiDmr~e~~~~~~~lS~~Ll~~i~~~l~-----~geQ~ 423 (730)
T COG1198 349 NAPVVLGSATPSLESYANAESGKYKLLRLTNRAGRARLPRVEIIDMRKEPLETGRSLSPALLEAIRKTLE-----RGEQV 423 (730)
T ss_pred CCCEEEecCCCCHHHHHhhhcCceEEEEccccccccCCCcceEEeccccccccCccCCHHHHHHHHHHHh-----cCCeE
Confidence 7899999999999988876544 22333433332 2 222222111 01111122221111 12333
Q ss_pred EEEcCCHH------------------------------------------------------------HHHHHHHHHHHH
Q 001722 534 LIFMTGQD------------------------------------------------------------EIEAACFALKER 553 (1020)
Q Consensus 534 LVFl~g~~------------------------------------------------------------eie~l~~~L~e~ 553 (1020)
|+|+|.+. -++.+.+.|.+.
T Consensus 424 llflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~~~G~GterieeeL~~~ 503 (730)
T COG1198 424 LLFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSEHLRAVGPGTERIEEELKRL 503 (730)
T ss_pred EEEEccCCccceeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCCeeEEecccHHHHHHHHHHH
Confidence 33333321 122222333322
Q ss_pred HHHhhccccCCCCCeEEEEecCCCCHH--HHHHHHHHhcCCCeEEEEecchhhccCCCCCeeEEE----EcCCccceecc
Q 001722 554 MEQLISSTTREVPELLILPIYSQLPAD--LQAKIFEKAKEGTRKCIVATNIAETSLTVDGIFYVI----DTGYGKMKVYN 627 (1020)
Q Consensus 554 l~~l~~~~~~~~~~l~vl~lhs~L~~~--eq~~I~~~f~~g~rkVIVATniaEtGItIp~V~~VI----D~G~~K~~~yd 627 (1020)
.|+..++-+-++.+.. .-...+..|.+|+..|||.|.++..|.++|+|+.|. |+|+ +.
T Consensus 504 -----------FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~aD~~L-----~~ 567 (730)
T COG1198 504 -----------FPGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGVLDADTGL-----GS 567 (730)
T ss_pred -----------CCCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhhcCCCcccceEEEEEechhhh-----cC
Confidence 4677778787776653 345678999999999999999999999999999874 3332 11
Q ss_pred CCCCcccccccccCHHHHHHHhcccCCCC-CCEEEE
Q 001722 628 PKMGMDALQVFPVSRAAADQRAGRAGRTG-PGTCYR 662 (1020)
Q Consensus 628 ~~~g~~~L~~~piS~as~~QRaGRAGR~g-~G~cyr 662 (1020)
..+.-.--.-.-+.|=+|||||.+ +|..+.
T Consensus 568 -----~DfRA~Er~fqll~QvaGRAgR~~~~G~VvI 598 (730)
T COG1198 568 -----PDFRASERTFQLLMQVAGRAGRAGKPGEVVI 598 (730)
T ss_pred -----CCcchHHHHHHHHHHHHhhhccCCCCCeEEE
Confidence 111112233446789999999984 776543
No 118
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.57 E-value=1.6e-13 Score=169.08 Aligned_cols=285 Identities=16% Similarity=0.099 Sum_probs=163.4
Q ss_pred CCeEEEEecCCCchHHHHHHHHHHhc-ccCCCEEEEEcccHHHHHHHHHHHHHHhccccCCEEEEEEee-eecCCCCccE
Q 001722 338 NQVVVVVGETGSGKTTQLTQYLLEDG-YTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELGDKVGYAIRF-EDVTGPSTLI 415 (1020)
Q Consensus 338 ~q~vII~gpTGSGKTtqi~q~Lle~~-~~~~~~Il~tqPrR~lA~qva~rva~e~~~~lG~~VGy~ir~-e~~~s~~t~I 415 (1020)
.+..+|+.+||||||..+...+.... .....+|+++.||..|..|..+.+........ ..++..-.. .........|
T Consensus 263 ~~~gli~~~TGsGKT~t~~~la~~l~~~~~~~~vl~lvdR~~L~~Q~~~~f~~~~~~~~-~~~~s~~~L~~~l~~~~~~i 341 (667)
T TIGR00348 263 ERGGLIWHTQGSGKTLTMLFAARKALELLKNPKVFFVVDRRELDYQLMKEFQSLQKDCA-ERIESIAELKRLLEKDDGGI 341 (667)
T ss_pred CceeEEEEecCCCccHHHHHHHHHHHhhcCCCeEEEEECcHHHHHHHHHHHHhhCCCCC-cccCCHHHHHHHHhCCCCCE
Confidence 35789999999999987654433221 12346899999999999999998855321110 001100000 0012234689
Q ss_pred EEEchHHHHHHHhc---CCCCCCc-cEEEEeCCCcCCCCccHHHHHHHHHHhhcCCceEEEEeccCC----HHHHHHHhC
Q 001722 416 KYMTDGVLLRETLK---DSDLDKY-RVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTSATLN----AQKFSDFFG 487 (1020)
Q Consensus 416 ~~~T~g~LLr~ll~---d~~L~~~-s~IIIDEaHERs~~tD~ll~lLk~il~~r~~lklIlmSATld----~~~f~~~f~ 487 (1020)
+++|...|.+.+.. ....... -+||+|||| |+....+. ..++ ...|+..+|++|||+- ...+ ..|+
T Consensus 342 ivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaH-rs~~~~~~-~~l~---~~~p~a~~lGfTaTP~~~~d~~t~-~~f~ 415 (667)
T TIGR00348 342 IITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAH-RSQYGELA-KNLK---KALKNASFFGFTGTPIFKKDRDTS-LTFA 415 (667)
T ss_pred EEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCc-cccchHHH-HHHH---hhCCCCcEEEEeCCCccccccccc-cccc
Confidence 99999988764321 1111111 289999999 66654422 2222 3457789999999992 2222 2222
Q ss_pred ---CCCeEee-------cCcccceeeeecCCCch-------------hH-------------------------------
Q 001722 488 ---SVPIFHI-------PGRTFPVNTLYSKTPCE-------------DY------------------------------- 513 (1020)
Q Consensus 488 ---~~pvi~i-------~gr~~pV~i~y~~~~~~-------------dy------------------------------- 513 (1020)
+.++... .|-..| +.|...... ++
T Consensus 416 ~~fg~~i~~Y~~~~AI~dG~~~~--i~Y~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 493 (667)
T TIGR00348 416 YVFGRYLHRYFITDAIRDGLTVK--IDYEDRLPEDHLDRKKLDAFFDEIFELLPERIREITKESLKEKLQKTKKILFNED 493 (667)
T ss_pred CCCCCeEEEeeHHHHhhcCCeee--EEEEecchhhccChHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHhhhcChH
Confidence 1222221 132223 223221110 00
Q ss_pred -HHHHHHHHHHHhh----cCCCCCEEEEcCCHHHHHHHHHHHHHHHHHhhccccCCCCCeEEEEecCCCCHH--------
Q 001722 514 -VEAAVKQAMTIHI----TSPPGDILIFMTGQDEIEAACFALKERMEQLISSTTREVPELLILPIYSQLPAD-------- 580 (1020)
Q Consensus 514 -l~~av~~~l~i~~----~~~~g~ILVFl~g~~eie~l~~~L~e~l~~l~~~~~~~~~~l~vl~lhs~L~~~-------- 580 (1020)
+...+..++ .|. ....++.+|||.++..+......|.+.+... .+...+.++++...+
T Consensus 494 ~~~~ia~~i~-~h~~~~~~~~~~kamvv~~sr~~a~~~~~~l~~~~~~~--------~~~~~vv~s~~~~~~~~~~~~~~ 564 (667)
T TIGR00348 494 RLESIAKDIA-EHYAKFKELFKFKAMVVAISRYACVEEKNALDEELNEK--------FEASAIVMTGKESDDAEIRDYNK 564 (667)
T ss_pred HHHHHHHHHH-HHHHHhhhcccCceeEEEecHHHHHHHHHHHHhhcccc--------cCCeeEEecCCccchhHHHHHHH
Confidence 000011111 111 1225889999999999988887776543211 011233333332211
Q ss_pred -------------HHHHHHHHhcC-CCeEEEEecchhhccCCCCCeeEEEEcCCccceeccCCCCcccccccccCHHHHH
Q 001722 581 -------------LQAKIFEKAKE-GTRKCIVATNIAETSLTVDGIFYVIDTGYGKMKVYNPKMGMDALQVFPVSRAAAD 646 (1020)
Q Consensus 581 -------------eq~~I~~~f~~-g~rkVIVATniaEtGItIp~V~~VID~G~~K~~~yd~~~g~~~L~~~piS~as~~ 646 (1020)
....+.+.|.. +..+|||.++.+-||+|.|.+.+++ .| .|+.-..++
T Consensus 565 ~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ilIVvdmllTGFDaP~l~tLy---------ld----------Kplk~h~Ll 625 (667)
T TIGR00348 565 HIRTKFDKSDGFEIYYKDLERFKKEENPKLLIVVDMLLTGFDAPILNTLY---------LD----------KPLKYHGLL 625 (667)
T ss_pred HhccccccchhhhHHHHHHHHhcCCCCceEEEEEcccccccCCCccceEE---------Ee----------ccccccHHH
Confidence 12357777765 6789999999999999999998876 23 466556789
Q ss_pred HHhcccCCC-CCCE
Q 001722 647 QRAGRAGRT-GPGT 659 (1020)
Q Consensus 647 QRaGRAGR~-g~G~ 659 (1020)
|.+||+-|. .+|+
T Consensus 626 Qai~R~nR~~~~~K 639 (667)
T TIGR00348 626 QAIARTNRIDGKDK 639 (667)
T ss_pred HHHHHhccccCCCC
Confidence 999999994 5543
No 119
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.55 E-value=4.1e-13 Score=160.72 Aligned_cols=295 Identities=18% Similarity=0.177 Sum_probs=177.6
Q ss_pred HHHHHHHHHHH----HhC-CeEEEEecCCCchHHHHHHHHHHhcccC-CCEEEEEcccHHHHHHHHHHHHHHhccccCCE
Q 001722 325 FSVRDELLQVI----REN-QVVVVVGETGSGKTTQLTQYLLEDGYTT-NGIVGCTQPRRVAAMSVAKRVSEEMDTELGDK 398 (1020)
Q Consensus 325 ~~~q~eil~~i----~~~-q~vII~gpTGSGKTtqi~q~Lle~~~~~-~~~Il~tqPrR~lA~qva~rva~e~~~~lG~~ 398 (1020)
..+|..++..+ .+| +-++|++.||+|||-.+.+++....... -++|+++.-|++|..|.+..+...+. .|..
T Consensus 167 RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAiaii~rL~r~~~~KRVLFLaDR~~Lv~QA~~af~~~~P--~~~~ 244 (875)
T COG4096 167 RYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIAIIDRLIKSGWVKRVLFLADRNALVDQAYGAFEDFLP--FGTK 244 (875)
T ss_pred hHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHHHHHHHHhcchhheeeEEechHHHHHHHHHHHHHhCC--Cccc
Confidence 45777665544 444 4589999999999987766554332211 25899999999999998877655432 2333
Q ss_pred EEEEEeeeecCCCCccEEEEchHHHHHHHhcC-C-----CCCCccEEEEeCCCcCCCCccHHHHHHHHHHhhcCCceEEE
Q 001722 399 VGYAIRFEDVTGPSTLIKYMTDGVLLRETLKD-S-----DLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIV 472 (1020)
Q Consensus 399 VGy~ir~e~~~s~~t~I~~~T~g~LLr~ll~d-~-----~L~~~s~IIIDEaHERs~~tD~ll~lLk~il~~r~~lklIl 472 (1020)
+- .-.+......++|.++|...+....... . ....|++||||||| |++..+.- ++|.- . +.-.++
T Consensus 245 ~n--~i~~~~~~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaH-Rgi~~~~~-~I~dY----F-dA~~~g 315 (875)
T COG4096 245 MN--KIEDKKGDTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAH-RGIYSEWS-SILDY----F-DAATQG 315 (875)
T ss_pred ee--eeecccCCcceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhh-hhHHhhhH-HHHHH----H-HHHHHh
Confidence 22 1122233346799999998887766543 1 24558999999999 88776532 22222 2 112345
Q ss_pred EeccCCH-H--HHHHHhCCCCeEee------------cCcccceeeeecC-------CC---------c--hh-------
Q 001722 473 TSATLNA-Q--KFSDFFGSVPIFHI------------PGRTFPVNTLYSK-------TP---------C--ED------- 512 (1020)
Q Consensus 473 mSATld~-~--~f~~~f~~~pvi~i------------~gr~~pV~i~y~~-------~~---------~--~d------- 512 (1020)
++||+.. . .=..||++.|+... |-+...+...+.. .. . .+
T Consensus 316 LTATP~~~~d~~T~~~F~g~Pt~~YsleeAV~DGfLvpy~vi~i~~~~~~~G~~~~~~serek~~g~~i~~dd~~~~~~d 395 (875)
T COG4096 316 LTATPKETIDRSTYGFFNGEPTYAYSLEEAVEDGFLVPYKVIRIDTDFDLDGWKPDAGSEREKLQGEAIDEDDQNFEARD 395 (875)
T ss_pred hccCcccccccccccccCCCcceeecHHHHhhccccCCCCceEEeeeccccCcCcCccchhhhhhccccCcccccccccc
Confidence 5999932 1 22347766665432 2111112221110 00 0 00
Q ss_pred --------HHHHHHHHHHHHhhcC-----CCCCEEEEcCCHHHHHHHHHHHHHHHHHhhccccCCCCCeEEEEecCCCCH
Q 001722 513 --------YVEAAVKQAMTIHITS-----PPGDILIFMTGQDEIEAACFALKERMEQLISSTTREVPELLILPIYSQLPA 579 (1020)
Q Consensus 513 --------yl~~av~~~l~i~~~~-----~~g~ILVFl~g~~eie~l~~~L~e~l~~l~~~~~~~~~~l~vl~lhs~L~~ 579 (1020)
.-...|...+...... ..+++||||.+..+++.+...|.+...+. .+-.+..+.+.-..
T Consensus 396 ~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~--------~~~~a~~IT~d~~~ 467 (875)
T COG4096 396 FDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEY--------NGRYAMKITGDAEQ 467 (875)
T ss_pred cchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccc--------cCceEEEEeccchh
Confidence 0111222223222222 14789999999999999999887754332 22234444444333
Q ss_pred HHHHHHHHHh-cCCCeEEEEecchhhccCCCCCeeEEEEcCCccceeccCCCCcccccccccCHHHHHHHhcccCCCCC
Q 001722 580 DLQAKIFEKA-KEGTRKCIVATNIAETSLTVDGIFYVIDTGYGKMKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTGP 657 (1020)
Q Consensus 580 ~eq~~I~~~f-~~g~rkVIVATniaEtGItIp~V~~VID~G~~K~~~yd~~~g~~~L~~~piS~as~~QRaGRAGR~g~ 657 (1020)
.|..|-.-+ ++.-..|.|+.+++.||||+|.|..+| |+. .-.|+.-|.|++||+-|..|
T Consensus 468 -~q~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlV---------F~r---------~VrSktkF~QMvGRGTRl~~ 527 (875)
T COG4096 468 -AQALIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLV---------FDR---------KVRSKTKFKQMVGRGTRLCP 527 (875)
T ss_pred -hHHHHHHHHhcCCCCceEEehhhhhcCCCchheeeee---------ehh---------hhhhHHHHHHHhcCccccCc
Confidence 233332222 344568999999999999999999888 331 23689999999999999875
No 120
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.49 E-value=6.6e-13 Score=136.16 Aligned_cols=164 Identities=24% Similarity=0.219 Sum_probs=116.0
Q ss_pred CCCcHHHHHHHHHHHHhC-CeEEEEecCCCchHHHHHHHHHHhcccC-CCEEEEEcccHHHHHHHHHHHHHHhccccCCE
Q 001722 321 YLPIFSVRDELLQVIREN-QVVVVVGETGSGKTTQLTQYLLEDGYTT-NGIVGCTQPRRVAAMSVAKRVSEEMDTELGDK 398 (1020)
Q Consensus 321 ~LPi~~~q~eil~~i~~~-q~vII~gpTGSGKTtqi~q~Lle~~~~~-~~~Il~tqPrR~lA~qva~rva~e~~~~lG~~ 398 (1020)
..+..++|.+++..+... ++++|.|+||||||+.+..++++..... ..+++++.|++.++.+...++...+....+..
T Consensus 6 ~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~ 85 (201)
T smart00487 6 FEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGKGKRVLVLVPTRELAEQWAEELKKLGPSLGLKV 85 (201)
T ss_pred CCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcccCCCcEEEEeCCHHHHHHHHHHHHHHhccCCeEE
Confidence 345788999999999988 9999999999999999888888775542 36799999999999999999876554221111
Q ss_pred EEEEEeeee-------cCCCCccEEEEchHHHHHHHhcCC-CCCCccEEEEeCCCcCCC--CccHHHHHHHHHHhhcCCc
Q 001722 399 VGYAIRFED-------VTGPSTLIKYMTDGVLLRETLKDS-DLDKYRVIVMDEAHERSL--STDVLFGILKKVVARRRDF 468 (1020)
Q Consensus 399 VGy~ir~e~-------~~s~~t~I~~~T~g~LLr~ll~d~-~L~~~s~IIIDEaHERs~--~tD~ll~lLk~il~~r~~l 468 (1020)
+.+ ..... .......++++|++.+.+.+.... ....+++|||||+|.... ..+.+..++..+ .+..
T Consensus 86 ~~~-~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~---~~~~ 161 (201)
T smart00487 86 VGL-YGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDGGFGDQLEKLLKLL---PKNV 161 (201)
T ss_pred EEE-eCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhcCCcHHHHHHHHHhC---Cccc
Confidence 111 11111 112233899999999998876544 567889999999996553 233333333322 4578
Q ss_pred eEEEEeccC--CHHHHHHHhCC
Q 001722 469 KLIVTSATL--NAQKFSDFFGS 488 (1020)
Q Consensus 469 klIlmSATl--d~~~f~~~f~~ 488 (1020)
++|+||||+ +...+...+..
T Consensus 162 ~~v~~saT~~~~~~~~~~~~~~ 183 (201)
T smart00487 162 QLLLLSATPPEEIENLLELFLN 183 (201)
T ss_pred eEEEEecCCchhHHHHHHHhcC
Confidence 999999999 45665555444
No 121
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.48 E-value=1.5e-11 Score=155.91 Aligned_cols=183 Identities=20% Similarity=0.230 Sum_probs=108.6
Q ss_pred ceEEEEeccCC----HHHHHHHhCCC--CeEeecCcccce---eeeecC--------CCchhHHHHHHHHHHHHhhcCCC
Q 001722 468 FKLIVTSATLN----AQKFSDFFGSV--PIFHIPGRTFPV---NTLYSK--------TPCEDYVEAAVKQAMTIHITSPP 530 (1020)
Q Consensus 468 lklIlmSATld----~~~f~~~f~~~--pvi~i~gr~~pV---~i~y~~--------~~~~dyl~~av~~~l~i~~~~~~ 530 (1020)
-.+|++|||+. .+-|.+.+|-. ....+....|+. ...|.. ....+|.......+..+.. ..+
T Consensus 596 ~~~il~SATL~~~~~~~~~~~~lGl~~~~~~~~~~spf~~~~~~~l~v~~d~~~~~~~~~~~~~~~ia~~i~~l~~-~~~ 674 (850)
T TIGR01407 596 KSLIFTSATLKFSHSFESFPQLLGLTDVHFNTIEPTPLNYAENQRVLIPTDAPAIQNKSLEEYAQEIASYIIEITA-ITS 674 (850)
T ss_pred CeEEEEecccccCCChHHHHHhcCCCccccceecCCCCCHHHcCEEEecCCCCCCCCCChHHHHHHHHHHHHHHHH-hcC
Confidence 36899999995 34555555521 112221223331 111211 1224566555555555433 346
Q ss_pred CCEEEEcCCHHHHHHHHHHHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHHHhcCCCeEEEEecchhhccCCCC
Q 001722 531 GDILIFMTGQDEIEAACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAETSLTVD 610 (1020)
Q Consensus 531 g~ILVFl~g~~eie~l~~~L~e~l~~l~~~~~~~~~~l~vl~lhs~L~~~eq~~I~~~f~~g~rkVIVATniaEtGItIp 610 (1020)
|.+|||+++....+.++..|...+. ..++.++. .+.. ..|.++++.|..+...|++||+.+..|||++
T Consensus 675 g~~LVlftS~~~l~~v~~~L~~~~~---------~~~~~~l~--q~~~-~~r~~ll~~F~~~~~~iLlgt~sf~EGVD~~ 742 (850)
T TIGR01407 675 PKILVLFTSYEMLHMVYDMLNELPE---------FEGYEVLA--QGIN-GSRAKIKKRFNNGEKAILLGTSSFWEGVDFP 742 (850)
T ss_pred CCEEEEeCCHHHHHHHHHHHhhhcc---------ccCceEEe--cCCC-ccHHHHHHHHHhCCCeEEEEcceeecccccC
Confidence 8999999999999999988864211 11233332 2222 4678899999999999999999999999999
Q ss_pred Cee--EEEEcCCccceeccC----------CCCcccc--cccccCHHHHHHHhcccCCCCC--CEEEEc
Q 001722 611 GIF--YVIDTGYGKMKVYNP----------KMGMDAL--QVFPVSRAAADQRAGRAGRTGP--GTCYRL 663 (1020)
Q Consensus 611 ~V~--~VID~G~~K~~~yd~----------~~g~~~L--~~~piS~as~~QRaGRAGR~g~--G~cyrL 663 (1020)
+.. .||-.|+--..--|| +.|-+.. ...|...-...|-+||.=|... |..+.|
T Consensus 743 g~~l~~viI~~LPf~~p~dp~~~a~~~~~~~~g~~~f~~~~lP~A~~~l~Qa~GRlIRs~~D~G~v~il 811 (850)
T TIGR01407 743 GNGLVCLVIPRLPFANPKHPLTKKYWQKLEQEGKNPFYDYVLPMAIIRLRQALGRLIRRENDRGSIVIL 811 (850)
T ss_pred CCceEEEEEeCCCCCCCCCHHHHHHHHHHHHhcCCchHHhhHHHHHHHHHHhhccccccCCceEEEEEE
Confidence 876 445445422111111 0111111 1234455678899999999874 766554
No 122
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.47 E-value=3.3e-13 Score=153.58 Aligned_cols=318 Identities=15% Similarity=0.069 Sum_probs=199.1
Q ss_pred hHHHHHHHcCCCcHHHHHHHHHHHHhCCeEEEEecCCCchHHHHHHHHHHhcc-cCCCEEEEEcccHHHHHHHHHHHHHH
Q 001722 312 SKTLAEQRQYLPIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGY-TTNGIVGCTQPRRVAAMSVAKRVSEE 390 (1020)
Q Consensus 312 ~~~l~~~R~~LPi~~~q~eil~~i~~~q~vII~gpTGSGKTtqi~q~Lle~~~-~~~~~Il~tqPrR~lA~qva~rva~e 390 (1020)
..++.+.-..-.-+++|.++|+.+.+++++++.-.|.+||+|+......+... ......++..|+.+++....+...-.
T Consensus 275 ~~~~~~~~~~E~~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~ 354 (1034)
T KOG4150|consen 275 IRSLLNKNTGESGIAISLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQTLCHATNSLLPSEMVEHLRNGSKGQVVH 354 (1034)
T ss_pred HHHHHhcccccchhhhhHHHHhhhhhcccccccchhhcCCccCcccchhhhhhcCcccceecchhHHHHhhccCCceEEE
Confidence 34455555556678999999999999999999999999999974332222211 11224556667777665432211000
Q ss_pred hccccCCEEEEEEeeeecCC---------CCccEEEEchHHHHHHHhcCCC-----CCCccEEEEeCCCcC-CCCccHHH
Q 001722 391 MDTELGDKVGYAIRFEDVTG---------PSTLIKYMTDGVLLRETLKDSD-----LDKYRVIVMDEAHER-SLSTDVLF 455 (1020)
Q Consensus 391 ~~~~lG~~VGy~ir~e~~~s---------~~t~I~~~T~g~LLr~ll~d~~-----L~~~s~IIIDEaHER-s~~tD~ll 455 (1020)
+..-....-.| |...+..+ .+.+++|..+.+.....+.+.. +-...++++||+|-. .+.....-
T Consensus 355 ~~~I~~~K~A~-V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~ 433 (1034)
T KOG4150|consen 355 VEVIKARKSAY-VEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLFPTKALAQ 433 (1034)
T ss_pred EEehhhhhcce-eecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeecchhhHHH
Confidence 00000000011 11111111 2567888888887766554322 334567899999942 22222222
Q ss_pred HHHHHHH------hhcCCceEEEEeccC-C-HHHHHHHhCC--CCeEeecCcccceeee--ecCC--C-----chhHHHH
Q 001722 456 GILKKVV------ARRRDFKLIVTSATL-N-AQKFSDFFGS--VPIFHIPGRTFPVNTL--YSKT--P-----CEDYVEA 516 (1020)
Q Consensus 456 ~lLk~il------~~r~~lklIlmSATl-d-~~~f~~~f~~--~pvi~i~gr~~pV~i~--y~~~--~-----~~dyl~~ 516 (1020)
..++.++ ....+++++-.|||+ + ....++.|+- ..++++.|..-.-+.+ +.+. | .++++..
T Consensus 434 ~~~R~L~~L~~~F~~~~~~~~~~~~~~~K~~~~~~~~~~~~~E~~Li~~DGSPs~~K~~V~WNP~~~P~~~~~~~~~i~E 513 (1034)
T KOG4150|consen 434 DQLRALSDLIKGFEASINMGVYDGDTPYKDRTRLRSELANLSELELVTIDGSPSSEKLFVLWNPSAPPTSKSEKSSKVVE 513 (1034)
T ss_pred HHHHHHHHHHHHHHhhcCcceEeCCCCcCCHHHHHHHhcCCcceEEEEecCCCCccceEEEeCCCCCCcchhhhhhHHHH
Confidence 2222222 234589999999999 3 5666777763 3456777765433322 2221 1 1233332
Q ss_pred HHHHHHHHhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHHHhhccccCCCCC--eEEEEecCCCCHHHHHHHHHHhcCCCe
Q 001722 517 AVKQAMTIHITSPPGDILIFMTGQDEIEAACFALKERMEQLISSTTREVPE--LLILPIYSQLPADLQAKIFEKAKEGTR 594 (1020)
Q Consensus 517 av~~~l~i~~~~~~g~ILVFl~g~~eie~l~~~L~e~l~~l~~~~~~~~~~--l~vl~lhs~L~~~eq~~I~~~f~~g~r 594 (1020)
..+...+.. ..+-.+|.||+.+.-|+.+....++.+.+- .+. -.|..+.||...++|.+|....-.|+.
T Consensus 514 ~s~~~~~~i--~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET-------~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~L 584 (1034)
T KOG4150|consen 514 VSHLFAEMV--QHGLRCIAFCPSRKLCELVLCLTREILAET-------APHLVEAITSYRGGYIAEDRRKIESDLFGGKL 584 (1034)
T ss_pred HHHHHHHHH--HcCCcEEEeccHHHHHHHHHHHHHHHHHHh-------hHHHHHHHHhhcCccchhhHHHHHHHhhCCee
Confidence 222222211 225678999999988877665555443221 111 135678899999999999999999999
Q ss_pred EEEEecchhhccCCCCCeeEEEEcCCccceeccCCCCcccccccccCHHHHHHHhcccCCCCC
Q 001722 595 KCIVATNIAETSLTVDGIFYVIDTGYGKMKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTGP 657 (1020)
Q Consensus 595 kVIVATniaEtGItIp~V~~VID~G~~K~~~yd~~~g~~~L~~~piS~as~~QRaGRAGR~g~ 657 (1020)
+-|||||.+|.||||.+.+.|+.+|| |.|.+++.|.+|||||...
T Consensus 585 ~giIaTNALELGIDIG~LDAVl~~GF------------------P~S~aNl~QQ~GRAGRRNk 629 (1034)
T KOG4150|consen 585 CGIIATNALELGIDIGHLDAVLHLGF------------------PGSIANLWQQAGRAGRRNK 629 (1034)
T ss_pred eEEEecchhhhccccccceeEEEccC------------------chhHHHHHHHhccccccCC
Confidence 99999999999999999999999995 9999999999999999874
No 123
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.47 E-value=5e-12 Score=159.56 Aligned_cols=112 Identities=15% Similarity=0.078 Sum_probs=88.7
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHHHhcC---CCeEEEEecchhhc
Q 001722 529 PPGDILIFMTGQDEIEAACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKE---GTRKCIVATNIAET 605 (1020)
Q Consensus 529 ~~g~ILVFl~g~~eie~l~~~L~e~l~~l~~~~~~~~~~l~vl~lhs~L~~~eq~~I~~~f~~---g~rkVIVATniaEt 605 (1020)
.+.+||||+.-...++.+...|.. .++.++.+||+++..+|..+++.|.. +...+|++|.++..
T Consensus 486 ~g~KVLIFSQft~~LdiLed~L~~-------------~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGl 552 (1033)
T PLN03142 486 RDSRVLIFSQMTRLLDILEDYLMY-------------RGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGL 552 (1033)
T ss_pred cCCeEEeehhHHHHHHHHHHHHHH-------------cCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEecccccc
Confidence 356899998655544444333321 25678889999999999999999954 33567899999999
Q ss_pred cCCCCCeeEEEEcCCccceeccCCCCcccccccccCHHHHHHHhcccCCCCC---CEEEEccChhhHhh
Q 001722 606 SLTVDGIFYVIDTGYGKMKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTGP---GTCYRLYTESAYLN 671 (1020)
Q Consensus 606 GItIp~V~~VID~G~~K~~~yd~~~g~~~L~~~piS~as~~QRaGRAGR~g~---G~cyrLyt~~~~~~ 671 (1020)
|||+...++||. || .|-+++...|+.|||-|.|. -.+|+|+++...+.
T Consensus 553 GINLt~Ad~VIi--------yD----------~dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~gTIEE 603 (1033)
T PLN03142 553 GINLATADIVIL--------YD----------SDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEE 603 (1033)
T ss_pred CCchhhCCEEEE--------eC----------CCCChHHHHHHHHHhhhcCCCceEEEEEEEeCCcHHH
Confidence 999999999997 67 57889999999999999984 57899999877644
No 124
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.47 E-value=9.5e-12 Score=151.02 Aligned_cols=274 Identities=19% Similarity=0.206 Sum_probs=179.2
Q ss_pred HHcCCCcHHHHHHHHHHHHhCCeEEEEecCCCchHHHHHHHHHHhcccCCCEEEEEcccHHHHHHHHHHHHHHhccccC-
Q 001722 318 QRQYLPIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELG- 396 (1020)
Q Consensus 318 ~R~~LPi~~~q~eil~~i~~~q~vII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~lA~qva~rva~e~~~~lG- 396 (1020)
.--..+.|..|.-...-+..|+..-|+||||.||||-...+.+-.+. ++++++++.||..|+.|+++++.+ |....|
T Consensus 77 k~~G~~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTfg~~~sl~~a~-kgkr~yii~PT~~Lv~Q~~~kl~~-~~e~~~~ 154 (1187)
T COG1110 77 KATGFRPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTFGLLMSLYLAK-KGKRVYIIVPTTTLVRQVYERLKK-FAEDAGS 154 (1187)
T ss_pred HhhCCCchHHHHHHHHHHHcCCceEEEcCCCCchhHHHHHHHHHHHh-cCCeEEEEecCHHHHHHHHHHHHH-HHhhcCC
Confidence 34456899999999999999999999999999999976554443322 257899999999999999999954 444333
Q ss_pred --CEEEEEEeee---------ecCCCCccEEEEchHHHHHHHhcCCCCCCccEEEEeCCCc---CCCCccHHHHHH----
Q 001722 397 --DKVGYAIRFE---------DVTGPSTLIKYMTDGVLLRETLKDSDLDKYRVIVMDEAHE---RSLSTDVLFGIL---- 458 (1020)
Q Consensus 397 --~~VGy~ir~e---------~~~s~~t~I~~~T~g~LLr~ll~d~~L~~~s~IIIDEaHE---Rs~~tD~ll~lL---- 458 (1020)
..++|.-... ...+.+-+|++.|...|...+-.-.. -++++|++|.++- .+-+.|-++.++
T Consensus 155 ~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~L~~-~kFdfifVDDVDA~LkaskNvDriL~LlGf~e 233 (1187)
T COG1110 155 LDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEELSK-LKFDFIFVDDVDAILKASKNVDRLLRLLGFSE 233 (1187)
T ss_pred cceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHHhcc-cCCCEEEEccHHHHHhccccHHHHHHHcCCCH
Confidence 1122221111 12234678999999988776432111 3789999999993 344455333322
Q ss_pred ------------HHHH----------------------hhcCCceEEEEeccCC-----HHHHHHHhCCCCeEeecCc--
Q 001722 459 ------------KKVV----------------------ARRRDFKLIVTSATLN-----AQKFSDFFGSVPIFHIPGR-- 497 (1020)
Q Consensus 459 ------------k~il----------------------~~r~~lklIlmSATld-----~~~f~~~f~~~pvi~i~gr-- 497 (1020)
+..+ .+...-.+|++|||.. ...|.+.++= .+.+.
T Consensus 234 E~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfReLlgF----evG~~~~ 309 (1187)
T COG1110 234 EVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFRELLGF----EVGSGGE 309 (1187)
T ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHHHHHhCC----ccCccch
Confidence 1111 1123467999999994 3456666651 11111
Q ss_pred -ccceeeeecCCCchhHHHHHHHHHHHHhhcCCCCCEEEEcCC---HHHHHHHHHHHHHHHHHhhccccCCCCCeEEEEe
Q 001722 498 -TFPVNTLYSKTPCEDYVEAAVKQAMTIHITSPPGDILIFMTG---QDEIEAACFALKERMEQLISSTTREVPELLILPI 573 (1020)
Q Consensus 498 -~~pV~i~y~~~~~~dyl~~av~~~l~i~~~~~~g~ILVFl~g---~~eie~l~~~L~e~l~~l~~~~~~~~~~l~vl~l 573 (1020)
...+...|...+. ++ .++.+-.. -+...|||++. ++.++++++.|.. .++.+..+
T Consensus 310 ~LRNIvD~y~~~~~---~e----~~~elvk~-lG~GgLIfV~~d~G~e~aeel~e~Lr~-------------~Gi~a~~~ 368 (1187)
T COG1110 310 GLRNIVDIYVESES---LE----KVVELVKK-LGDGGLIFVPIDYGREKAEELAEYLRS-------------HGINAELI 368 (1187)
T ss_pred hhhheeeeeccCcc---HH----HHHHHHHH-hCCCeEEEEEcHHhHHHHHHHHHHHHh-------------cCceEEEe
Confidence 1123333433321 12 22211111 14468999998 7777777777754 37788888
Q ss_pred cCCCCHHHHHHHHHHhcCCCeEEEEec----chhhccCCCCC-eeEEEEcCCccce
Q 001722 574 YSQLPADLQAKIFEKAKEGTRKCIVAT----NIAETSLTVDG-IFYVIDTGYGKMK 624 (1020)
Q Consensus 574 hs~L~~~eq~~I~~~f~~g~rkVIVAT----niaEtGItIp~-V~~VID~G~~K~~ 624 (1020)
|+. ..+.++.|..|...|+|.. +++-+|||+|. |+|+|-.|-.|.+
T Consensus 369 ~a~-----~~~~le~F~~GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvPk~r 419 (1187)
T COG1110 369 HAE-----KEEALEDFEEGEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVPKFR 419 (1187)
T ss_pred ecc-----chhhhhhhccCceeEEEEecccccceeecCCchhheeEEEEecCCcee
Confidence 873 2678899999999999865 48999999984 7899999987543
No 125
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.46 E-value=9.3e-13 Score=127.15 Aligned_cols=136 Identities=33% Similarity=0.329 Sum_probs=98.1
Q ss_pred CeEEEEecCCCchHHHHHHHHHHhccc-CCCEEEEEcccHHHHHHHHHHHHHHhccccCCEEEEEEeeeecC------CC
Q 001722 339 QVVVVVGETGSGKTTQLTQYLLEDGYT-TNGIVGCTQPRRVAAMSVAKRVSEEMDTELGDKVGYAIRFEDVT------GP 411 (1020)
Q Consensus 339 q~vII~gpTGSGKTtqi~q~Lle~~~~-~~~~Il~tqPrR~lA~qva~rva~e~~~~lG~~VGy~ir~e~~~------s~ 411 (1020)
++++|.|+||+|||+++..++...... ..+++++++|++.++.+....+...... +..+.+........ ..
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~~~~~~~lv~~p~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 78 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDSLKGGQVLVLAPTRELANQVAERLKELFGE--GIKVGYLIGGTSIKQQEKLLSG 78 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhcccCCCEEEEcCcHHHHHHHHHHHHHHhhC--CcEEEEEecCcchhHHHHHhcC
Confidence 468999999999999998887776543 3568999999999999999988776543 44555554444433 45
Q ss_pred CccEEEEchHHHHHHHhcCC-CCCCccEEEEeCCCcCCCCccHHHHHHHHHHhhcCCceEEEEeccC
Q 001722 412 STLIKYMTDGVLLRETLKDS-DLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTSATL 477 (1020)
Q Consensus 412 ~t~I~~~T~g~LLr~ll~d~-~L~~~s~IIIDEaHERs~~tD~ll~lLk~il~~r~~lklIlmSATl 477 (1020)
...|+++|.+.+.+.+.... ....+++|||||+|.-......... ...........+++++|||+
T Consensus 79 ~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~-~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 79 KTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQGFGLLG-LKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred CCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhhcchHHHH-HHHHhhCCccceEEEEeccC
Confidence 78999999999988776543 3567899999999943222211111 22333445678999999996
No 126
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=99.44 E-value=5.4e-13 Score=131.72 Aligned_cols=134 Identities=22% Similarity=0.264 Sum_probs=94.0
Q ss_pred hCCeEEEEecCCCchHHHHHHHHHHhcccCCCEEEEEcccHHHHHHHHHHHHHHhccccCCEEEEEEeee-ecCCCCccE
Q 001722 337 ENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELGDKVGYAIRFE-DVTGPSTLI 415 (1020)
Q Consensus 337 ~~q~vII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~lA~qva~rva~e~~~~lG~~VGy~ir~e-~~~s~~t~I 415 (1020)
+++..+|-..||+|||+.++.-++.+.+..+.+++++.|+|++|.++++.+. |..+.+....- .....+..|
T Consensus 3 kg~~~~~d~hpGaGKTr~vlp~~~~~~i~~~~rvLvL~PTRvva~em~~aL~-------~~~~~~~t~~~~~~~~g~~~i 75 (148)
T PF07652_consen 3 KGELTVLDLHPGAGKTRRVLPEIVREAIKRRLRVLVLAPTRVVAEEMYEALK-------GLPVRFHTNARMRTHFGSSII 75 (148)
T ss_dssp TTEEEEEE--TTSSTTTTHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHTT-------TSSEEEESTTSS----SSSSE
T ss_pred CCceeEEecCCCCCCcccccHHHHHHHHHccCeEEEecccHHHHHHHHHHHh-------cCCcccCceeeeccccCCCcc
Confidence 5778899999999999976555666667778899999999999999988773 22344432222 123456789
Q ss_pred EEEchHHHHHHHhcCCCCCCccEEEEeCCCcCCCCccHHHHHHHHHHhhcCCceEEEEeccCC
Q 001722 416 KYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTSATLN 478 (1020)
Q Consensus 416 ~~~T~g~LLr~ll~d~~L~~~s~IIIDEaHERs~~tD~ll~lLk~il~~r~~lklIlmSATld 478 (1020)
.+||.+.+.+.+++...+.+|++||+||||--+..+-...++++..... ...++|+||||+.
T Consensus 76 ~vMc~at~~~~~~~p~~~~~yd~II~DEcH~~Dp~sIA~rg~l~~~~~~-g~~~~i~mTATPP 137 (148)
T PF07652_consen 76 DVMCHATYGHFLLNPCRLKNYDVIIMDECHFTDPTSIAARGYLRELAES-GEAKVIFMTATPP 137 (148)
T ss_dssp EEEEHHHHHHHHHTSSCTTS-SEEEECTTT--SHHHHHHHHHHHHHHHT-TS-EEEEEESS-T
T ss_pred cccccHHHHHHhcCcccccCccEEEEeccccCCHHHHhhheeHHHhhhc-cCeeEEEEeCCCC
Confidence 9999999999888766689999999999997565565677777776443 4679999999983
No 127
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.44 E-value=1e-11 Score=149.26 Aligned_cols=125 Identities=19% Similarity=0.104 Sum_probs=81.2
Q ss_pred HcCCCcHHHHHHHHHHHHhCCeEEEEecCCCchHHHHHHHHHHhcccCCCEEEEEcccHHHHHHHHHHHHHHhccccCCE
Q 001722 319 RQYLPIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELGDK 398 (1020)
Q Consensus 319 R~~LPi~~~q~eil~~i~~~q~vII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~lA~qva~rva~e~~~~lG~~ 398 (1020)
++.|-++++--+++-.+.-.+--|....||+|||+.+..+++-..+. +..|.++.|+-.||.+-+..+...+ ..+|..
T Consensus 72 ~R~lg~r~ydvQlig~l~Ll~G~VaEM~TGEGKTLvA~l~a~l~AL~-G~~VhvvT~NdyLA~RDae~m~~ly-~~LGLs 149 (764)
T PRK12326 72 ERTLGLRPFDVQLLGALRLLAGDVIEMATGEGKTLAGAIAAAGYALQ-GRRVHVITVNDYLARRDAEWMGPLY-EALGLT 149 (764)
T ss_pred HHHcCCCcchHHHHHHHHHhCCCcccccCCCCHHHHHHHHHHHHHHc-CCCeEEEcCCHHHHHHHHHHHHHHH-HhcCCE
Confidence 33444444444444444433444779999999999987777655544 5567788899999999998886554 357888
Q ss_pred EEEEEeeeec----CCCCccEEEEchHHHHHHHhcC--------CCCCCccEEEEeCCC
Q 001722 399 VGYAIRFEDV----TGPSTLIKYMTDGVLLRETLKD--------SDLDKYRVIVMDEAH 445 (1020)
Q Consensus 399 VGy~ir~e~~----~s~~t~I~~~T~g~LLr~ll~d--------~~L~~~s~IIIDEaH 445 (1020)
||+....... ..-.++|+|+|+.-|---.+.| .....+.+.|||||+
T Consensus 150 vg~i~~~~~~~err~aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvD 208 (764)
T PRK12326 150 VGWITEESTPEERRAAYACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEAD 208 (764)
T ss_pred EEEECCCCCHHHHHHHHcCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchh
Confidence 8864332111 1125789999987643222222 125668899999998
No 128
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.42 E-value=2.2e-12 Score=157.89 Aligned_cols=113 Identities=18% Similarity=0.144 Sum_probs=98.6
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHHHhcCCCeEEEEecchhhccCC
Q 001722 529 PPGDILIFMTGQDEIEAACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAETSLT 608 (1020)
Q Consensus 529 ~~g~ILVFl~g~~eie~l~~~L~e~l~~l~~~~~~~~~~l~vl~lhs~L~~~eq~~I~~~f~~g~rkVIVATniaEtGIt 608 (1020)
.+..+||||+++..++.+++.|.+. ++.+..+||+++..+|.+++..|+.|...|+|||+++++|+|
T Consensus 441 ~g~~vLIf~~tk~~ae~L~~~L~~~-------------gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~L~rGfD 507 (655)
T TIGR00631 441 RNERVLVTTLTKKMAEDLTDYLKEL-------------GIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLREGLD 507 (655)
T ss_pred CCCEEEEEECCHHHHHHHHHHHhhh-------------ccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcChhcCCee
Confidence 4678999999999999999888653 567888999999999999999999999999999999999999
Q ss_pred CCCeeEEEEcCCccceeccCCCCcccccccccCHHHHHHHhcccCCCCCCEEEEccChh
Q 001722 609 VDGIFYVIDTGYGKMKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTGPGTCYRLYTES 667 (1020)
Q Consensus 609 Ip~V~~VID~G~~K~~~yd~~~g~~~L~~~piS~as~~QRaGRAGR~g~G~cyrLyt~~ 667 (1020)
+|++.+||. +|.. +.-.|.|..+|+||+|||||..+|+|+.+++..
T Consensus 508 iP~v~lVvi--------~Dad-----ifG~p~~~~~~iqriGRagR~~~G~vi~~~~~~ 553 (655)
T TIGR00631 508 LPEVSLVAI--------LDAD-----KEGFLRSERSLIQTIGRAARNVNGKVIMYADKI 553 (655)
T ss_pred eCCCcEEEE--------eCcc-----cccCCCCHHHHHHHhcCCCCCCCCEEEEEEcCC
Confidence 999999986 3321 112578899999999999999999999988754
No 129
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.38 E-value=4.8e-12 Score=122.59 Aligned_cols=104 Identities=25% Similarity=0.430 Sum_probs=93.0
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHHHhcCCCeEEEEecchhhccCC
Q 001722 529 PPGDILIFMTGQDEIEAACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAETSLT 608 (1020)
Q Consensus 529 ~~g~ILVFl~g~~eie~l~~~L~e~l~~l~~~~~~~~~~l~vl~lhs~L~~~eq~~I~~~f~~g~rkVIVATniaEtGIt 608 (1020)
..+++|||+++...++.++..|.+ ....+.++||+++..++..+++.|.++..+||++|+++++|+|
T Consensus 27 ~~~~~lvf~~~~~~~~~~~~~l~~-------------~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~~G~d 93 (131)
T cd00079 27 KGGKVLIFCPSKKMLDELAELLRK-------------PGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIARGID 93 (131)
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHh-------------cCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhhcCcC
Confidence 578999999999999998887754 2567899999999999999999999999999999999999999
Q ss_pred CCCeeEEEEcCCccceeccCCCCcccccccccCHHHHHHHhcccCCCC-CCEEEEc
Q 001722 609 VDGIFYVIDTGYGKMKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTG-PGTCYRL 663 (1020)
Q Consensus 609 Ip~V~~VID~G~~K~~~yd~~~g~~~L~~~piS~as~~QRaGRAGR~g-~G~cyrL 663 (1020)
+|++++||..+ .|.+...+.|++||+||.| .|.|+.+
T Consensus 94 ~~~~~~vi~~~------------------~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 94 LPNVSVVINYD------------------LPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred hhhCCEEEEeC------------------CCCCHHHheecccccccCCCCceEEeC
Confidence 99999999643 4888999999999999999 6888753
No 130
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.36 E-value=4.2e-11 Score=148.16 Aligned_cols=97 Identities=22% Similarity=0.123 Sum_probs=72.5
Q ss_pred EEEcCCHHHHHHHHHHHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHHHh------------------------
Q 001722 534 LIFMTGQDEIEAACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKA------------------------ 589 (1020)
Q Consensus 534 LVFl~g~~eie~l~~~L~e~l~~l~~~~~~~~~~l~vl~lhs~L~~~eq~~I~~~f------------------------ 589 (1020)
||=+.+...+-.++..|...+. .....+.+..+||..+...|..+++..
T Consensus 760 liR~anI~p~V~~A~~L~~~~~-------~~~~~i~~~~yHSr~~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~ 832 (1110)
T TIGR02562 760 LIRVANIDPLIRLAQFLYALLA-------EEKYQIHLCCYHAQDPLLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQN 832 (1110)
T ss_pred EEEEcCchHHHHHHHHHHhhcc-------ccCCceeEEEecccChHHHHHHHHHHHHHHhcccChhhhhchHHHHHHHhc
Confidence 6667778888778777765432 122467789999999888887776542
Q ss_pred --cCCCeEEEEecchhhccCCCCCeeEEEEcCCccceeccCCCCcccccccccCHHHHHHHhcccCCCCCC
Q 001722 590 --KEGTRKCIVATNIAETSLTVDGIFYVIDTGYGKMKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTGPG 658 (1020)
Q Consensus 590 --~~g~rkVIVATniaEtGItIp~V~~VID~G~~K~~~yd~~~g~~~L~~~piS~as~~QRaGRAGR~g~G 658 (1020)
..+...|||||.+.|.|+|++ .+++| +.|.+..+.+||+||..|.+.+
T Consensus 833 ~~~~~~~~i~v~Tqv~E~g~D~d-fd~~~--------------------~~~~~~~sliQ~aGR~~R~~~~ 882 (1110)
T TIGR02562 833 SPALNHLFIVLATPVEEVGRDHD-YDWAI--------------------ADPSSMRSIIQLAGRVNRHRLE 882 (1110)
T ss_pred ccccCCCeEEEEeeeEEEEeccc-CCeee--------------------eccCcHHHHHHHhhcccccccC
Confidence 124679999999999999998 33333 2477889999999999998853
No 131
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.36 E-value=1e-11 Score=152.85 Aligned_cols=112 Identities=18% Similarity=0.137 Sum_probs=97.8
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHHHhcCCCeEEEEecchhhccCC
Q 001722 529 PPGDILIFMTGQDEIEAACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAETSLT 608 (1020)
Q Consensus 529 ~~g~ILVFl~g~~eie~l~~~L~e~l~~l~~~~~~~~~~l~vl~lhs~L~~~eq~~I~~~f~~g~rkVIVATniaEtGIt 608 (1020)
.+..+||||+++..++.++..|.+. ++.+..+||+++..+|..++..|+.|...|+|||+++++|++
T Consensus 445 ~g~~viIf~~t~~~ae~L~~~L~~~-------------gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~rGfd 511 (652)
T PRK05298 445 KGERVLVTTLTKRMAEDLTDYLKEL-------------GIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLD 511 (652)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHhhc-------------ceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHhCCcc
Confidence 4678999999999999999888642 678899999999999999999999999999999999999999
Q ss_pred CCCeeEEEEcCCccceeccCCCCcccccccccCHHHHHHHhcccCCCCCCEEEEccCh
Q 001722 609 VDGIFYVIDTGYGKMKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTGPGTCYRLYTE 666 (1020)
Q Consensus 609 Ip~V~~VID~G~~K~~~yd~~~g~~~L~~~piS~as~~QRaGRAGR~g~G~cyrLyt~ 666 (1020)
+|++++||.+. .. +.-.|.+..+|+||+|||||...|+|+.+++.
T Consensus 512 lp~v~lVii~d--------~e-----ifG~~~~~~~yiqr~GR~gR~~~G~~i~~~~~ 556 (652)
T PRK05298 512 IPEVSLVAILD--------AD-----KEGFLRSERSLIQTIGRAARNVNGKVILYADK 556 (652)
T ss_pred ccCCcEEEEeC--------Cc-----ccccCCCHHHHHHHhccccCCCCCEEEEEecC
Confidence 99999999733 11 11146789999999999999888999999884
No 132
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.35 E-value=3.1e-11 Score=148.25 Aligned_cols=125 Identities=19% Similarity=0.152 Sum_probs=89.2
Q ss_pred HcCCCcHHHHHHHHHHHHhCCeEEEEecCCCchHHHHHHHHHHhcccCCCEEEEEcccHHHHHHHHHHHHHHhccccCCE
Q 001722 319 RQYLPIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELGDK 398 (1020)
Q Consensus 319 R~~LPi~~~q~eil~~i~~~q~vII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~lA~qva~rva~e~~~~lG~~ 398 (1020)
|+.|-+.+|--+++-.+.=++--|....||+|||+++..+++-..+. +..|.++.|+..||.+-+..+...+ ..+|..
T Consensus 76 ~R~lGm~~ydVQliGg~~Lh~G~iaEM~TGEGKTLvA~l~a~l~al~-G~~VhvvT~ndyLA~RD~e~m~~l~-~~lGl~ 153 (913)
T PRK13103 76 KRVMGMRHFDVQLIGGMTLHEGKIAEMRTGEGKTLVGTLAVYLNALS-GKGVHVVTVNDYLARRDANWMRPLY-EFLGLS 153 (913)
T ss_pred HHHhCCCcchhHHHhhhHhccCccccccCCCCChHHHHHHHHHHHHc-CCCEEEEeCCHHHHHHHHHHHHHHh-cccCCE
Confidence 55677777777788877777777899999999999987777655544 4567778899999999999886655 357788
Q ss_pred EEEEEeeee----cCCCCccEEEEchHHH----HHH-Hh---cCCCCCCccEEEEeCCC
Q 001722 399 VGYAIRFED----VTGPSTLIKYMTDGVL----LRE-TL---KDSDLDKYRVIVMDEAH 445 (1020)
Q Consensus 399 VGy~ir~e~----~~s~~t~I~~~T~g~L----Lr~-ll---~d~~L~~~s~IIIDEaH 445 (1020)
||....... ...-.++|+|+|...+ |+. +. .+.....+.++||||+|
T Consensus 154 v~~i~~~~~~~err~~Y~~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvD 212 (913)
T PRK13103 154 VGIVTPFQPPEEKRAAYAADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVD 212 (913)
T ss_pred EEEECCCCCHHHHHHHhcCCEEEEcccccccchhhccceechhhhcccccceeEechhh
Confidence 875322111 0112478999999886 332 11 12235788999999999
No 133
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.33 E-value=9e-10 Score=138.68 Aligned_cols=135 Identities=15% Similarity=0.133 Sum_probs=85.1
Q ss_pred hhHHHHHHHHHHHHhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHHHhc
Q 001722 511 EDYVEAAVKQAMTIHITSPPGDILIFMTGQDEIEAACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAK 590 (1020)
Q Consensus 511 ~dyl~~av~~~l~i~~~~~~g~ILVFl~g~~eie~l~~~L~e~l~~l~~~~~~~~~~l~vl~lhs~L~~~eq~~I~~~f~ 590 (1020)
++|.+.....+..+. ..+|.+|||+|+.+..+.+++.|... ...++.-..+.+ +.++.+.|.
T Consensus 630 ~~~~~~~~~~i~~~~--~~~g~~LVLFtS~~~l~~v~~~l~~~-------------~~~~l~Qg~~~~---~~~l~~~F~ 691 (820)
T PRK07246 630 EVYAEEIAKRLEELK--QLQQPILVLFNSKKHLLAVSDLLDQW-------------QVSHLAQEKNGT---AYNIKKRFD 691 (820)
T ss_pred HHHHHHHHHHHHHHH--hcCCCEEEEECcHHHHHHHHHHHhhc-------------CCcEEEeCCCcc---HHHHHHHHH
Confidence 467666666655544 35799999999999999888777431 122322221222 345788898
Q ss_pred CCCeEEEEecchhhccCCCCC--eeEEEEcCCccceeccCC----------CCcccc--cccccCHHHHHHHhcccCCCC
Q 001722 591 EGTRKCIVATNIAETSLTVDG--IFYVIDTGYGKMKVYNPK----------MGMDAL--QVFPVSRAAADQRAGRAGRTG 656 (1020)
Q Consensus 591 ~g~rkVIVATniaEtGItIp~--V~~VID~G~~K~~~yd~~----------~g~~~L--~~~piS~as~~QRaGRAGR~g 656 (1020)
.+...||++|..+-.|||+|+ ...||-.++--..-.||. .|-+.. ...|.-.-.+.|-+||.=|+.
T Consensus 692 ~~~~~vLlG~~sFwEGVD~p~~~~~~viI~kLPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~ 771 (820)
T PRK07246 692 RGEQQILLGLGSFWEGVDFVQADRMIEVITRLPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRRE 771 (820)
T ss_pred cCCCeEEEecchhhCCCCCCCCCeEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCC
Confidence 888899999999999999973 444543444222111211 111111 123544567889999999988
Q ss_pred --CCEEEEc
Q 001722 657 --PGTCYRL 663 (1020)
Q Consensus 657 --~G~cyrL 663 (1020)
.|.++.|
T Consensus 772 ~D~Gvv~il 780 (820)
T PRK07246 772 DQKSAVLIL 780 (820)
T ss_pred CCcEEEEEE
Confidence 4876644
No 134
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.32 E-value=1.9e-11 Score=150.63 Aligned_cols=163 Identities=18% Similarity=0.226 Sum_probs=120.1
Q ss_pred ceEEEEeccC--CHHHHHHHhCCCCeEeecCccccee------eeecCCCchhHHHHHHHHHHHHhhcCCCCCEEEEcCC
Q 001722 468 FKLIVTSATL--NAQKFSDFFGSVPIFHIPGRTFPVN------TLYSKTPCEDYVEAAVKQAMTIHITSPPGDILIFMTG 539 (1020)
Q Consensus 468 lklIlmSATl--d~~~f~~~f~~~pvi~i~gr~~pV~------i~y~~~~~~dyl~~av~~~l~i~~~~~~g~ILVFl~g 539 (1020)
.|+-+||.|. ....|.+.++ .+++.||... |+. ..|. ...+...+.+..+...| ..+.+|||||++
T Consensus 534 ~kLaGMTGTA~te~~Ef~~iY~-L~Vv~IPTnr-P~~R~D~~d~vy~--t~~eK~~Ali~~I~~~~--~~grpVLIft~S 607 (1025)
T PRK12900 534 KKLAGMTGTAETEASEFFEIYK-LDVVVIPTNK-PIVRKDMDDLVYK--TRREKYNAIVLKVEELQ--KKGQPVLVGTAS 607 (1025)
T ss_pred hhhcccCCCChhHHHHHHHHhC-CcEEECCCCC-CcceecCCCeEec--CHHHHHHHHHHHHHHHh--hCCCCEEEEeCc
Confidence 3688899998 4556666654 6788887543 322 2221 12233444444444444 346799999999
Q ss_pred HHHHHHHHHHHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHHHhcCCCeEEEEecchhhccCCCC---CeeEE-
Q 001722 540 QDEIEAACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAETSLTVD---GIFYV- 615 (1020)
Q Consensus 540 ~~eie~l~~~L~e~l~~l~~~~~~~~~~l~vl~lhs~L~~~eq~~I~~~f~~g~rkVIVATniaEtGItIp---~V~~V- 615 (1020)
.+..+.++..|.+. ++....||+ .+.+|...+..|..+...|+||||+|++|+||+ +|..|
T Consensus 608 ve~sE~Ls~~L~~~-------------gI~h~vLna--kq~~REa~Iia~AG~~g~VtIATNMAGRGtDIkl~~~V~~vG 672 (1025)
T PRK12900 608 VEVSETLSRMLRAK-------------RIAHNVLNA--KQHDREAEIVAEAGQKGAVTIATNMAGRGTDIKLGEGVRELG 672 (1025)
T ss_pred HHHHHHHHHHHHHc-------------CCCceeecC--CHHHhHHHHHHhcCCCCeEEEeccCcCCCCCcCCccchhhhC
Confidence 99999998888653 555677886 577888889999999999999999999999999 55433
Q ss_pred ----EEcCCccceeccCCCCcccccccccCHHHHHHHhcccCCCC-CCEEEEccChhhH
Q 001722 616 ----IDTGYGKMKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTG-PGTCYRLYTESAY 669 (1020)
Q Consensus 616 ----ID~G~~K~~~yd~~~g~~~L~~~piS~as~~QRaGRAGR~g-~G~cyrLyt~~~~ 669 (1020)
|.+ ..|-|...+.||+|||||.| ||.+..+++.++.
T Consensus 673 GL~VIgt------------------erhes~Rid~Ql~GRtGRqGdpGsS~ffvSleD~ 713 (1025)
T PRK12900 673 GLFILGS------------------ERHESRRIDRQLRGRAGRQGDPGESVFYVSLEDE 713 (1025)
T ss_pred CceeeCC------------------CCCchHHHHHHHhhhhhcCCCCcceEEEechhHH
Confidence 432 25788889999999999999 7999999998764
No 135
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.29 E-value=2.5e-10 Score=140.35 Aligned_cols=322 Identities=18% Similarity=0.170 Sum_probs=205.8
Q ss_pred HhCCeEEEEecCCCchHHHHHHHHHHhcccCCCEEEEEcccHHHHHHHHHHHHHHhccccCCEEEEEEeeee----cCCC
Q 001722 336 RENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELGDKVGYAIRFED----VTGP 411 (1020)
Q Consensus 336 ~~~q~vII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~lA~qva~rva~e~~~~lG~~VGy~ir~e~----~~s~ 411 (1020)
..|.+|+|.+|+|||||.++-..++. -...++++++.|.-+.+..++.-+...++.-.|..+- ...++. +.-.
T Consensus 1157 ~~nd~v~vga~~gsgkt~~ae~a~l~--~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~~G~~~~-~l~ge~s~~lkl~~ 1233 (1674)
T KOG0951|consen 1157 NTNDNVLVGAPNGSGKTACAELALLR--PDTIGRAVYIAPLEEIADEQYRDWEKKFSKLLGLRIV-KLTGETSLDLKLLQ 1233 (1674)
T ss_pred cccceEEEecCCCCchhHHHHHHhcC--CccceEEEEecchHHHHHHHHHHHHHhhccccCceEE-ecCCccccchHHhh
Confidence 35788999999999999999888876 3345789999999999999888887777655554432 112221 2234
Q ss_pred CccEEEEchHHHHHHHhcCCCCCCccEEEEeCCCcCC-CCc---cHHHHHHHHHHhhcCCceEEEEeccC-CHHHHHHHh
Q 001722 412 STLIKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERS-LST---DVLFGILKKVVARRRDFKLIVTSATL-NAQKFSDFF 486 (1020)
Q Consensus 412 ~t~I~~~T~g~LLr~ll~d~~L~~~s~IIIDEaHERs-~~t---D~ll~lLk~il~~r~~lklIlmSATl-d~~~f~~~f 486 (1020)
..+|+++||+..-.. . ....+++.|.||.|.-+ .+. .++..+-....+.-.++|++.+|..+ |+..+ -++
T Consensus 1234 ~~~vii~tpe~~d~l--q--~iQ~v~l~i~d~lh~igg~~g~v~evi~S~r~ia~q~~k~ir~v~ls~~lana~d~-ig~ 1308 (1674)
T KOG0951|consen 1234 KGQVIISTPEQWDLL--Q--SIQQVDLFIVDELHLIGGVYGAVYEVICSMRYIASQLEKKIRVVALSSSLANARDL-IGA 1308 (1674)
T ss_pred hcceEEechhHHHHH--h--hhhhcceEeeehhhhhcccCCceEEEEeeHHHHHHHHHhheeEEEeehhhccchhh-ccc
Confidence 678999999875322 1 57788999999999644 111 23333222222344679999999998 78777 334
Q ss_pred CCCCeEeec--CcccceeeeecCCCchhHHH---HHHH---HHHHHhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHH---
Q 001722 487 GSVPIFHIP--GRTFPVNTLYSKTPCEDYVE---AAVK---QAMTIHITSPPGDILIFMTGQDEIEAACFALKERME--- 555 (1020)
Q Consensus 487 ~~~pvi~i~--gr~~pV~i~y~~~~~~dyl~---~av~---~~l~i~~~~~~g~ILVFl~g~~eie~l~~~L~e~l~--- 555 (1020)
....+++.+ .|.-|.+++........|.. +..+ +.+..|. ..+.+.+||+|+++.+..++..|-....
T Consensus 1309 s~~~v~Nf~p~~R~~Pl~i~i~~~~~~~~~~~~~am~~~~~~ai~~~a-~~~k~~~vf~p~rk~~~~~a~~~~~~s~~~~ 1387 (1674)
T KOG0951|consen 1309 SSSGVFNFSPSVRPVPLEIHIQSVDISHFESRMLAMTKPTYTAIVRHA-GNRKPAIVFLPTRKHARLVAVDLVTFSHADE 1387 (1674)
T ss_pred cccceeecCcccCCCceeEEEEEeccchhHHHHHHhhhhHHHHHHHHh-cCCCCeEEEeccchhhhhhhhccchhhccCc
Confidence 445566654 45566666544332222211 1111 2222232 2467899999999999988754422100
Q ss_pred ------Hhh--ccccCCCCCeEEEEecCCCCHHHHHHHHHHhcCCCeEEEEecchhhccCCCCCeeEEEEcCCccceecc
Q 001722 556 ------QLI--SSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAETSLTVDGIFYVIDTGYGKMKVYN 627 (1020)
Q Consensus 556 ------~l~--~~~~~~~~~l~vl~lhs~L~~~eq~~I~~~f~~g~rkVIVATniaEtGItIp~V~~VID~G~~K~~~yd 627 (1020)
... +......-...|. |-+|+...+.-+-..|..|.+.|.|...- -.|+-...--+|| . .+.+||
T Consensus 1388 ~~~l~~~~e~~~~~l~e~l~~gvg--~e~~s~~d~~iv~~l~e~g~i~v~v~s~~-~~~~~~~~~lVvv-m---gt~~yd 1460 (1674)
T KOG0951|consen 1388 PDYLLSELEECDETLRESLKHGVG--HEGLSSNDQEIVQQLFEAGAIQVCVMSRD-CYGTKLKAHLVVV-M---GTQYYD 1460 (1674)
T ss_pred HHHHHHHHhcchHhhhhccccccc--ccccCcchHHHHHHHHhcCcEEEEEEEcc-cccccccceEEEE-e---cceeec
Confidence 000 0001111223333 99999999999999999999999887665 6777665444444 2 357788
Q ss_pred CCCCcccccccccCHHHHHHHhcccCCCCCCEEEEccC--hhhHhhccCCCCcc
Q 001722 628 PKMGMDALQVFPVSRAAADQRAGRAGRTGPGTCYRLYT--ESAYLNEMLPSPVP 679 (1020)
Q Consensus 628 ~~~g~~~L~~~piS~as~~QRaGRAGR~g~G~cyrLyt--~~~~~~~m~~~~~P 679 (1020)
-+..-. .+.+.+...|+.|+|.| .|+|+.+.. ...|...+...+.|
T Consensus 1461 g~e~~~----~~y~i~~ll~m~G~a~~--~~k~vi~~~~~~k~yykkfl~e~lP 1508 (1674)
T KOG0951|consen 1461 GKEHSY----EDYPIAELLQMVGLASG--AGKCVIMCHTPKKEYYKKFLYEPLP 1508 (1674)
T ss_pred cccccc----ccCchhHHHHHhhhhcC--CccEEEEecCchHHHHHHhccCcCc
Confidence 654422 46777999999999988 567766654 55565555555544
No 136
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.29 E-value=9.7e-10 Score=126.27 Aligned_cols=165 Identities=21% Similarity=0.189 Sum_probs=118.2
Q ss_pred ceEEEEeccCCHHHHHHHhCCC--CeEeecCcccc-eeeeecCCCchhHHHHHHHHHHHHhhcCCCCCEEEEcCCHHHHH
Q 001722 468 FKLIVTSATLNAQKFSDFFGSV--PIFHIPGRTFP-VNTLYSKTPCEDYVEAAVKQAMTIHITSPPGDILIFMTGQDEIE 544 (1020)
Q Consensus 468 lklIlmSATld~~~f~~~f~~~--pvi~i~gr~~p-V~i~y~~~~~~dyl~~av~~~l~i~~~~~~g~ILVFl~g~~eie 544 (1020)
.++|..|||+..-.+..--++. .++.-.|-.-| +++.-.....+|.+......+ ..+..+||-.-|++-+|
T Consensus 387 ~q~i~VSATPg~~E~e~s~~~vveQiIRPTGLlDP~ievRp~~~QvdDL~~EI~~r~------~~~eRvLVTtLTKkmAE 460 (663)
T COG0556 387 PQTIYVSATPGDYELEQSGGNVVEQIIRPTGLLDPEIEVRPTKGQVDDLLSEIRKRV------AKNERVLVTTLTKKMAE 460 (663)
T ss_pred CCEEEEECCCChHHHHhccCceeEEeecCCCCCCCceeeecCCCcHHHHHHHHHHHH------hcCCeEEEEeehHHHHH
Confidence 5899999999554444322211 12222233333 233323333444443322221 23578999999999999
Q ss_pred HHHHHHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHHHhcCCCeEEEEecchhhccCCCCCeeEEEEcCCccce
Q 001722 545 AACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAETSLTVDGIFYVIDTGYGKMK 624 (1020)
Q Consensus 545 ~l~~~L~e~l~~l~~~~~~~~~~l~vl~lhs~L~~~eq~~I~~~f~~g~rkVIVATniaEtGItIp~V~~VID~G~~K~~ 624 (1020)
.+++.|.+. ++.+..+||.+..-+|..|+...+.|...|||.-|.+-.|||+|.|..|.-
T Consensus 461 dLT~Yl~e~-------------gikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVAI------- 520 (663)
T COG0556 461 DLTEYLKEL-------------GIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAI------- 520 (663)
T ss_pred HHHHHHHhc-------------CceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccCCCcceeEEEE-------
Confidence 888888763 889999999999999999999999999999999999999999999999853
Q ss_pred eccC-CCCcccccccccCHHHHHHHhcccCCCCCCEEEEccC
Q 001722 625 VYNP-KMGMDALQVFPVSRAAADQRAGRAGRTGPGTCYRLYT 665 (1020)
Q Consensus 625 ~yd~-~~g~~~L~~~piS~as~~QRaGRAGR~g~G~cyrLyt 665 (1020)
.|. +-| +.-|-.+.+|-+|||.|.-.|+++....
T Consensus 521 -lDADKeG------FLRse~SLIQtIGRAARN~~GkvIlYAD 555 (663)
T COG0556 521 -LDADKEG------FLRSERSLIQTIGRAARNVNGKVILYAD 555 (663)
T ss_pred -eecCccc------cccccchHHHHHHHHhhccCCeEEEEch
Confidence 333 223 3567889999999999999999876543
No 137
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.29 E-value=6.8e-12 Score=111.91 Aligned_cols=73 Identities=26% Similarity=0.319 Sum_probs=68.7
Q ss_pred CCeEEEEecCCCCHHHHHHHHHHhcCCCeEEEEecchhhccCCCCCeeEEEEcCCccceeccCCCCcccccccccCHHHH
Q 001722 566 PELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAETSLTVDGIFYVIDTGYGKMKVYNPKMGMDALQVFPVSRAAA 645 (1020)
Q Consensus 566 ~~l~vl~lhs~L~~~eq~~I~~~f~~g~rkVIVATniaEtGItIp~V~~VID~G~~K~~~yd~~~g~~~L~~~piS~as~ 645 (1020)
.++.+..+||+++..+|..+++.|..+...|||||+++++|||+|++++||..+ .|.|...|
T Consensus 6 ~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~------------------~~~~~~~~ 67 (78)
T PF00271_consen 6 KGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYD------------------PPWSPEEY 67 (78)
T ss_dssp TTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESS------------------SESSHHHH
T ss_pred CCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccc------------------cCCCHHHH
Confidence 378899999999999999999999999999999999999999999999999854 48999999
Q ss_pred HHHhcccCCCC
Q 001722 646 DQRAGRAGRTG 656 (1020)
Q Consensus 646 ~QRaGRAGR~g 656 (1020)
.|++||+||.|
T Consensus 68 ~Q~~GR~~R~g 78 (78)
T PF00271_consen 68 IQRIGRAGRIG 78 (78)
T ss_dssp HHHHTTSSTTT
T ss_pred HHHhhcCCCCC
Confidence 99999999976
No 138
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.26 E-value=1.9e-11 Score=125.24 Aligned_cols=146 Identities=16% Similarity=0.127 Sum_probs=94.4
Q ss_pred CCcHHHHHHHHHHHHh-------CCeEEEEecCCCchHHHHHHHHHHhcccCCCEEEEEcccHHHHHHHHHHHHHHhccc
Q 001722 322 LPIFSVRDELLQVIRE-------NQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTE 394 (1020)
Q Consensus 322 LPi~~~q~eil~~i~~-------~q~vII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~lA~qva~rva~e~~~~ 394 (1020)
+.++++|.+++..+.+ +..+++.+|||||||..+..++.+... +++++.|+..++.|....+.......
T Consensus 2 ~~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~----~~l~~~p~~~l~~Q~~~~~~~~~~~~ 77 (184)
T PF04851_consen 2 YKLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR----KVLIVAPNISLLEQWYDEFDDFGSEK 77 (184)
T ss_dssp -EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC----EEEEEESSHHHHHHHHHHHHHHSTTS
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc----ceeEecCHHHHHHHHHHHHHHhhhhh
Confidence 3578899999998874 689999999999999998876666543 88999999999999998883222111
Q ss_pred cC------------CEEE----EEEeeeecCCCCccEEEEchHHHHHHHhcC------------CCCCCccEEEEeCCCc
Q 001722 395 LG------------DKVG----YAIRFEDVTGPSTLIKYMTDGVLLRETLKD------------SDLDKYRVIVMDEAHE 446 (1020)
Q Consensus 395 lG------------~~VG----y~ir~e~~~s~~t~I~~~T~g~LLr~ll~d------------~~L~~~s~IIIDEaHE 446 (1020)
.. .... ..............+.+.|...|....... .....+++||+||||+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI~DEaH~ 157 (184)
T PF04851_consen 78 YNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVIIDEAHH 157 (184)
T ss_dssp EEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEEEETGGC
T ss_pred hhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEEEehhhh
Confidence 00 0000 000001112346778999998887764321 1245778999999994
Q ss_pred CCCCccHHHHHHHHHHhhcCCceEEEEeccC
Q 001722 447 RSLSTDVLFGILKKVVARRRDFKLIVTSATL 477 (1020)
Q Consensus 447 Rs~~tD~ll~lLk~il~~r~~lklIlmSATl 477 (1020)
-. .... .+.++. .+...+|+||||+
T Consensus 158 ~~-~~~~----~~~i~~-~~~~~~l~lTATp 182 (184)
T PF04851_consen 158 YP-SDSS----YREIIE-FKAAFILGLTATP 182 (184)
T ss_dssp TH-HHHH----HHHHHH-SSCCEEEEEESS-
T ss_pred cC-CHHH----HHHHHc-CCCCeEEEEEeCc
Confidence 22 2221 233333 5678899999997
No 139
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.24 E-value=6.2e-10 Score=135.81 Aligned_cols=125 Identities=20% Similarity=0.136 Sum_probs=77.3
Q ss_pred HcCCCcHHHHHHHHHHHHhCCeEEEEecCCCchHHHHHHHHHHhcccCCCEEEEEcccHHHHHHHHHHHHHHhccccCCE
Q 001722 319 RQYLPIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELGDK 398 (1020)
Q Consensus 319 R~~LPi~~~q~eil~~i~~~q~vII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~lA~qva~rva~e~~~~lG~~ 398 (1020)
++.|-++++--+++-.+.-++--|....||=|||+.+..+++-.++...+.-+||+- --||.-=+..+...+ ..+|.+
T Consensus 72 ~R~lG~r~ydVQliGglvLh~G~IAEMkTGEGKTLvAtLpayLnAL~GkgVhVVTvN-dYLA~RDae~mg~vy-~fLGLs 149 (925)
T PRK12903 72 KRVLGKRPYDVQIIGGIILDLGSVAEMKTGEGKTITSIAPVYLNALTGKGVIVSTVN-EYLAERDAEEMGKVF-NFLGLS 149 (925)
T ss_pred HHHhCCCcCchHHHHHHHHhcCCeeeecCCCCccHHHHHHHHHHHhcCCceEEEecc-hhhhhhhHHHHHHHH-HHhCCc
Confidence 555666666666777766666668999999999998877766555554455555543 344433333332222 356778
Q ss_pred EEEEEeeee----cCCCCccEEEEchHHHHHHHhcC--------CCCCCccEEEEeCCC
Q 001722 399 VGYAIRFED----VTGPSTLIKYMTDGVLLRETLKD--------SDLDKYRVIVMDEAH 445 (1020)
Q Consensus 399 VGy~ir~e~----~~s~~t~I~~~T~g~LLr~ll~d--------~~L~~~s~IIIDEaH 445 (1020)
||..+...+ ...-.+.|.|+|+.-|---.+.| .....+.+.|||||+
T Consensus 150 vG~i~~~~~~~~rr~aY~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVD 208 (925)
T PRK12903 150 VGINKANMDPNLKREAYACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVD 208 (925)
T ss_pred eeeeCCCCChHHHHHhccCCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccch
Confidence 876543211 11226789999997653322222 225677889999988
No 140
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.23 E-value=3.7e-10 Score=138.43 Aligned_cols=125 Identities=19% Similarity=0.081 Sum_probs=84.5
Q ss_pred HcCCCcHHHHHHHHHHHHhCCeEEEEecCCCchHHHHHHHHHHhcccCCCEEEEEcccHHHHHHHHHHHHHHhccccCCE
Q 001722 319 RQYLPIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELGDK 398 (1020)
Q Consensus 319 R~~LPi~~~q~eil~~i~~~q~vII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~lA~qva~rva~e~~~~lG~~ 398 (1020)
++.|-+.++--+++-.+.-++--|....||.|||+++..+++-.++. +..|-++.+...||..-+..+... -..+|-+
T Consensus 70 ~R~lG~r~ydvQlig~l~L~~G~IaEm~TGEGKTL~a~l~ayl~aL~-G~~VhVvT~NdyLA~RD~e~m~pv-y~~LGLs 147 (870)
T CHL00122 70 FRTLGLRHFDVQLIGGLVLNDGKIAEMKTGEGKTLVATLPAYLNALT-GKGVHIVTVNDYLAKRDQEWMGQI-YRFLGLT 147 (870)
T ss_pred HHHhCCCCCchHhhhhHhhcCCccccccCCCCchHHHHHHHHHHHhc-CCceEEEeCCHHHHHHHHHHHHHH-HHHcCCc
Confidence 45666666667778887778888999999999999877766544443 445666678888888877766443 3457888
Q ss_pred EEEEEeeee----cCCCCccEEEEchHHHHHHHhcC--------CCCCCccEEEEeCCC
Q 001722 399 VGYAIRFED----VTGPSTLIKYMTDGVLLRETLKD--------SDLDKYRVIVMDEAH 445 (1020)
Q Consensus 399 VGy~ir~e~----~~s~~t~I~~~T~g~LLr~ll~d--------~~L~~~s~IIIDEaH 445 (1020)
||......+ ...=.+.|+|+|+.-|---.+.| .....+.+.|||||+
T Consensus 148 vg~i~~~~~~~err~aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvD 206 (870)
T CHL00122 148 VGLIQEGMSSEERKKNYLKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVD 206 (870)
T ss_pred eeeeCCCCChHHHHHhcCCCCEecCCccccccchhhccCcChHHhhccccceeeeecch
Confidence 886433211 11125689999996443222222 125678899999998
No 141
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=99.13 E-value=5.3e-09 Score=128.27 Aligned_cols=126 Identities=19% Similarity=0.104 Sum_probs=86.8
Q ss_pred HHcCCCcHHHHHHHHHHHHhCCeEEEEecCCCchHHHHHHHHHHhcccCCCEEEEEcccHHHHHHHHHHHHHHhccccCC
Q 001722 318 QRQYLPIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELGD 397 (1020)
Q Consensus 318 ~R~~LPi~~~q~eil~~i~~~q~vII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~lA~qva~rva~e~~~~lG~ 397 (1020)
.|+.|-+.++--+++-++.=++--|....||-|||+++..+++-..+... .|-++.+..-||..-+..+...+ ..+|-
T Consensus 78 ~~R~lG~r~ydVQliGgl~Lh~G~IAEM~TGEGKTL~atlpaylnAL~Gk-gVhVVTvNdYLA~RDae~m~~vy-~~LGL 155 (939)
T PRK12902 78 SKRVLGMRHFDVQLIGGMVLHEGQIAEMKTGEGKTLVATLPSYLNALTGK-GVHVVTVNDYLARRDAEWMGQVH-RFLGL 155 (939)
T ss_pred HHHHhCCCcchhHHHhhhhhcCCceeeecCCCChhHHHHHHHHHHhhcCC-CeEEEeCCHHHHHhHHHHHHHHH-HHhCC
Confidence 36677777777888888877888899999999999998877776666533 45555577777766666554333 35788
Q ss_pred EEEEEEeeee----cCCCCccEEEEchHHH-----HHHHhcC---CCCCCccEEEEeCCC
Q 001722 398 KVGYAIRFED----VTGPSTLIKYMTDGVL-----LRETLKD---SDLDKYRVIVMDEAH 445 (1020)
Q Consensus 398 ~VGy~ir~e~----~~s~~t~I~~~T~g~L-----Lr~ll~d---~~L~~~s~IIIDEaH 445 (1020)
+||......+ ...-.++|+|+|+.-| ...+..+ .....+.+.|||||+
T Consensus 156 tvg~i~~~~~~~err~aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvD 215 (939)
T PRK12902 156 SVGLIQQDMSPEERKKNYACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVD 215 (939)
T ss_pred eEEEECCCCChHHHHHhcCCCeEEecCCcccccchhhhhcccccccccCccceEEEeccc
Confidence 8886432111 1122688999999876 3333222 235778899999998
No 142
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.11 E-value=2.1e-10 Score=101.71 Aligned_cols=72 Identities=36% Similarity=0.495 Sum_probs=67.3
Q ss_pred CeEEEEecCCCCHHHHHHHHHHhcCCCeEEEEecchhhccCCCCCeeEEEEcCCccceeccCCCCcccccccccCHHHHH
Q 001722 567 ELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAETSLTVDGIFYVIDTGYGKMKVYNPKMGMDALQVFPVSRAAAD 646 (1020)
Q Consensus 567 ~l~vl~lhs~L~~~eq~~I~~~f~~g~rkVIVATniaEtGItIp~V~~VID~G~~K~~~yd~~~g~~~L~~~piS~as~~ 646 (1020)
++.+..+||+++..+|..+++.|..+..+|||+|+++++|+|++++.+||..+ .|.+...+.
T Consensus 11 ~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~------------------~~~~~~~~~ 72 (82)
T smart00490 11 GIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYD------------------LPWSPASYI 72 (82)
T ss_pred CCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeC------------------CCCCHHHHH
Confidence 67899999999999999999999999999999999999999999999999755 388999999
Q ss_pred HHhcccCCCC
Q 001722 647 QRAGRAGRTG 656 (1020)
Q Consensus 647 QRaGRAGR~g 656 (1020)
|++||+||.|
T Consensus 73 Q~~gR~~R~g 82 (82)
T smart00490 73 QRIGRAGRAG 82 (82)
T ss_pred HhhcccccCC
Confidence 9999999975
No 143
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.09 E-value=3.9e-08 Score=126.00 Aligned_cols=141 Identities=18% Similarity=0.278 Sum_probs=89.5
Q ss_pred hhHHHHHHHHHHHHhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHHHhc
Q 001722 511 EDYVEAAVKQAMTIHITSPPGDILIFMTGQDEIEAACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAK 590 (1020)
Q Consensus 511 ~dyl~~av~~~l~i~~~~~~g~ILVFl~g~~eie~l~~~L~e~l~~l~~~~~~~~~~l~vl~lhs~L~~~eq~~I~~~f~ 590 (1020)
..|.......+..+. ...+|.+|||+|+....+.++..|..... ..++.++. . ++....+.++.+.|.
T Consensus 734 ~~~~~~la~~i~~l~-~~~~g~~LVLFtSy~~l~~v~~~l~~~~~---------~~~~~ll~-Q-g~~~~~r~~l~~~F~ 801 (928)
T PRK08074 734 EEYIEEVAAYIAKIA-KATKGRMLVLFTSYEMLKKTYYNLKNEEE---------LEGYVLLA-Q-GVSSGSRARLTKQFQ 801 (928)
T ss_pred HHHHHHHHHHHHHHH-HhCCCCEEEEECCHHHHHHHHHHHhhccc---------ccCceEEe-c-CCCCCCHHHHHHHHH
Confidence 456666665555543 33478999999999999999988864321 11232322 2 333344677888888
Q ss_pred CCCeEEEEecchhhccCCCCCe--eEEEEcCCccceeccC----------CCCcccc--cccccCHHHHHHHhcccCCCC
Q 001722 591 EGTRKCIVATNIAETSLTVDGI--FYVIDTGYGKMKVYNP----------KMGMDAL--QVFPVSRAAADQRAGRAGRTG 656 (1020)
Q Consensus 591 ~g~rkVIVATniaEtGItIp~V--~~VID~G~~K~~~yd~----------~~g~~~L--~~~piS~as~~QRaGRAGR~g 656 (1020)
.+...||++|..+-.|||+||- ..||-.++--..-=|| +.|-+.. ...|...-...|-+||.=|..
T Consensus 802 ~~~~~iLlG~~sFwEGVD~pg~~l~~viI~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~ 881 (928)
T PRK08074 802 QFDKAILLGTSSFWEGIDIPGDELSCLVIVRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTE 881 (928)
T ss_pred hcCCeEEEecCcccCccccCCCceEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccC
Confidence 8888999999999999999974 6666555421100011 0111111 123555667789999999987
Q ss_pred C--CEEEEc
Q 001722 657 P--GTCYRL 663 (1020)
Q Consensus 657 ~--G~cyrL 663 (1020)
. |..+.|
T Consensus 882 ~D~G~v~il 890 (928)
T PRK08074 882 TDRGTVFVL 890 (928)
T ss_pred CceEEEEEe
Confidence 4 776644
No 144
>PRK14873 primosome assembly protein PriA; Provisional
Probab=99.07 E-value=4.4e-09 Score=129.02 Aligned_cols=133 Identities=7% Similarity=-0.005 Sum_probs=86.9
Q ss_pred EecCCCchHHHHHHHHHHhcccCCCEEEEEcccHHHHHHHHHHHHHHhc-cccCCEEEEEEee---------eecCCCCc
Q 001722 344 VGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMD-TELGDKVGYAIRF---------EDVTGPST 413 (1020)
Q Consensus 344 ~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~lA~qva~rva~e~~-~~lG~~VGy~ir~---------e~~~s~~t 413 (1020)
.+-+|||||..+.+.+.+. +..++.++++.|...++.|+..++...++ .. .+.|.-.. ........
T Consensus 166 ~~~~GSGKTevyl~~i~~~-l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~---v~~lhS~l~~~~R~~~w~~~~~G~~ 241 (665)
T PRK14873 166 QALPGEDWARRLAAAAAAT-LRAGRGALVVVPDQRDVDRLEAALRALLGAGD---VAVLSAGLGPADRYRRWLAVLRGQA 241 (665)
T ss_pred hcCCCCcHHHHHHHHHHHH-HHcCCeEEEEecchhhHHHHHHHHHHHcCCCc---EEEECCCCCHHHHHHHHHHHhCCCC
Confidence 3446999999998866554 34477899999999999999999988776 22 22221111 11223456
Q ss_pred cEEEEchHHHHHHHhcCCCCCCccEEEEeCCCcCCCCccHHHH-HHH---HHHhhcCCceEEEEeccCCHHHHHHHh
Q 001722 414 LIKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFG-ILK---KVVARRRDFKLIVTSATLNAQKFSDFF 486 (1020)
Q Consensus 414 ~I~~~T~g~LLr~ll~d~~L~~~s~IIIDEaHERs~~tD~ll~-lLk---~il~~r~~lklIlmSATld~~~f~~~f 486 (1020)
+|++.|-.-+. .-+.++++|||||-|+-++..+-... -.+ .......+..+|+.|||+..+.+...-
T Consensus 242 ~IViGtRSAvF------aP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~~~~~lvLgSaTPSles~~~~~ 312 (665)
T PRK14873 242 RVVVGTRSAVF------APVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQHGCALLIGGHARTAEAQALVE 312 (665)
T ss_pred cEEEEcceeEE------eccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHh
Confidence 78888865432 13788999999999964443331000 011 112234588999999999988876543
No 145
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=98.98 E-value=5.2e-08 Score=118.73 Aligned_cols=294 Identities=19% Similarity=0.165 Sum_probs=170.2
Q ss_pred HhCCeEEEEecCCCchHHHHHHHHHHhcccCCCEEEEEcccHHHHHHHHHHHHHHhccccCCEEEEEEeeeecCCC-Ccc
Q 001722 336 RENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELGDKVGYAIRFEDVTGP-STL 414 (1020)
Q Consensus 336 ~~~q~vII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~lA~qva~rva~e~~~~lG~~VGy~ir~e~~~s~-~t~ 414 (1020)
..+.+.+|-+|.||||||++..|+.+..-....+|+++.-|+.++.+++.++.... +.+-+-|.-........ ...
T Consensus 47 ~~~~V~vVRSpMGTGKTtaLi~wLk~~l~~~~~~VLvVShRrSL~~sL~~rf~~~~---l~gFv~Y~d~~~~~i~~~~~~ 123 (824)
T PF02399_consen 47 QKRGVLVVRSPMGTGKTTALIRWLKDALKNPDKSVLVVSHRRSLTKSLAERFKKAG---LSGFVNYLDSDDYIIDGRPYD 123 (824)
T ss_pred CCCCeEEEECCCCCCcHHHHHHHHHHhccCCCCeEEEEEhHHHHHHHHHHHHhhcC---CCcceeeeccccccccccccC
Confidence 35678899999999999999998887654557899999999999999999995421 11223332111111111 123
Q ss_pred EEEEchHHHHHHHhcCCCCCCccEEEEeCCCc-----C--CC-CccHHHHHHHHHHhhcCCceEEEEeccCCHH---HHH
Q 001722 415 IKYMTDGVLLRETLKDSDLDKYRVIVMDEAHE-----R--SL-STDVLFGILKKVVARRRDFKLIVTSATLNAQ---KFS 483 (1020)
Q Consensus 415 I~~~T~g~LLr~ll~d~~L~~~s~IIIDEaHE-----R--s~-~tD~ll~lLk~il~~r~~lklIlmSATld~~---~f~ 483 (1020)
-+.++-..|.|.. .+.+.+|++|||||+-. . ++ +....+.+|+.++.. .-++|+|-||++.. -++
T Consensus 124 rLivqIdSL~R~~--~~~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~--ak~VI~~DA~ln~~tvdFl~ 199 (824)
T PF02399_consen 124 RLIVQIDSLHRLD--GSLLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIRN--AKTVIVMDADLNDQTVDFLA 199 (824)
T ss_pred eEEEEehhhhhcc--cccccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHHh--CCeEEEecCCCCHHHHHHHH
Confidence 3344445554432 44688899999999862 1 11 122345566666654 45899999999743 333
Q ss_pred HHhCCCCeEeecCc----ccce-eeeecCCCchhHHHH--------------------------------HHHHHHHHhh
Q 001722 484 DFFGSVPIFHIPGR----TFPV-NTLYSKTPCEDYVEA--------------------------------AVKQAMTIHI 526 (1020)
Q Consensus 484 ~~f~~~pvi~i~gr----~~pV-~i~y~~~~~~dyl~~--------------------------------av~~~l~i~~ 526 (1020)
.+-++.++..|.+. .|.- .-.+.+.-..+.+.+ .....+...
T Consensus 200 ~~Rp~~~i~vI~n~y~~~~fs~R~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tF~~~L~~~- 278 (824)
T PF02399_consen 200 SCRPDENIHVIVNTYASPGFSNRRCTFLRSLGTDTLAAALNPEDENADTSPTPKHSPDPTATAAISNDETTFFSELLAR- 278 (824)
T ss_pred HhCCCCcEEEEEeeeecCCcccceEEEecccCcHHHHHHhCCcccccccCCCcCCCCccccccccccchhhHHHHHHHH-
Confidence 33334343332211 1110 001111000011100 011111111
Q ss_pred cCCCCCEEEEcCCHHHHHHHHHHHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHHHhcCCCeEEEEecchhhcc
Q 001722 527 TSPPGDILIFMTGQDEIEAACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAETS 606 (1020)
Q Consensus 527 ~~~~g~ILVFl~g~~eie~l~~~L~e~l~~l~~~~~~~~~~l~vl~lhs~L~~~eq~~I~~~f~~g~rkVIVATniaEtG 606 (1020)
...+..|-||+++..-.+.+++..... ...|+.+.|.-+.. .|. .+ +..+||+=|++...|
T Consensus 279 L~~gknIcvfsSt~~~~~~v~~~~~~~-------------~~~Vl~l~s~~~~~---dv~-~W--~~~~VviYT~~itvG 339 (824)
T PF02399_consen 279 LNAGKNICVFSSTVSFAEIVARFCARF-------------TKKVLVLNSTDKLE---DVE-SW--KKYDVVIYTPVITVG 339 (824)
T ss_pred HhCCCcEEEEeChHHHHHHHHHHHHhc-------------CCeEEEEcCCCCcc---ccc-cc--cceeEEEEeceEEEE
Confidence 123567888998888777776665431 45577777766655 222 22 468999999999999
Q ss_pred CCCCCeeEEEEcCCccceeccCCCCcccccccccCHHHHHHHhcccCCCCCCEEEEccChhh
Q 001722 607 LTVDGIFYVIDTGYGKMKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTGPGTCYRLYTESA 668 (1020)
Q Consensus 607 ItIp~V~~VID~G~~K~~~yd~~~g~~~L~~~piS~as~~QRaGRAGR~g~G~cyrLyt~~~ 668 (1020)
++++...+=--.+++|... .-.+..+..|+.||+=.......|..+....
T Consensus 340 ~Sf~~~HF~~~f~yvk~~~------------~gpd~~s~~Q~lgRvR~l~~~ei~v~~d~~~ 389 (824)
T PF02399_consen 340 LSFEEKHFDSMFAYVKPMS------------YGPDMVSVYQMLGRVRSLLDNEIYVYIDASG 389 (824)
T ss_pred eccchhhceEEEEEecCCC------------CCCcHHHHHHHHHHHHhhccCeEEEEEeccc
Confidence 9998553321122222111 1245567899999997777777776665443
No 146
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=98.97 E-value=5.6e-09 Score=118.65 Aligned_cols=300 Identities=17% Similarity=0.177 Sum_probs=170.1
Q ss_pred cHHHHHHHHHHHHhC---CeEEEEecCCCchHHHHHHHHHHhcccCCCEEEEEcccHHHHHHHHHHHHHHhccccCCEEE
Q 001722 324 IFSVRDELLQVIREN---QVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELGDKVG 400 (1020)
Q Consensus 324 i~~~q~eil~~i~~~---q~vII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~lA~qva~rva~e~~~~lG~~VG 400 (1020)
+.+||+.-|..+..| +.-||+-|-|+|||++-.-.+ -.-.++++|+...-+.+.|...++..--...-...+-
T Consensus 303 iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa----~tikK~clvLcts~VSVeQWkqQfk~wsti~d~~i~r 378 (776)
T KOG1123|consen 303 IRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAA----CTIKKSCLVLCTSAVSVEQWKQQFKQWSTIQDDQICR 378 (776)
T ss_pred cCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeee----eeecccEEEEecCccCHHHHHHHHHhhcccCccceEE
Confidence 678999999988766 467899999999998632211 1113456666677777777777664322222112222
Q ss_pred EEEeeeecCCCCccEEEEchHHHHHH---------HhcCCCCCCccEEEEeCCCcCCCCccHHHHHHHHHHhhcCCceEE
Q 001722 401 YAIRFEDVTGPSTLIKYMTDGVLLRE---------TLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLI 471 (1020)
Q Consensus 401 y~ir~e~~~s~~t~I~~~T~g~LLr~---------ll~d~~L~~~s~IIIDEaHERs~~tD~ll~lLk~il~~r~~lklI 471 (1020)
+.-...+....++-|++.|..|+... ++.--.-...+++|+||+|- +- -.++++++..-..---+
T Consensus 379 FTsd~Ke~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHv--vP----A~MFRRVlsiv~aHcKL 452 (776)
T KOG1123|consen 379 FTSDAKERFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHV--VP----AKMFRRVLSIVQAHCKL 452 (776)
T ss_pred eeccccccCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhcc--ch----HHHHHHHHHHHHHHhhc
Confidence 22111222334567889998887531 11101135679999999993 22 22334443321111237
Q ss_pred EEeccC--CHHHHHH--HhCCCCeEee-------cCccccee--eeecCCCc---hhHHHH-----------------HH
Q 001722 472 VTSATL--NAQKFSD--FFGSVPIFHI-------PGRTFPVN--TLYSKTPC---EDYVEA-----------------AV 518 (1020)
Q Consensus 472 lmSATl--d~~~f~~--~f~~~pvi~i-------~gr~~pV~--i~y~~~~~---~dyl~~-----------------av 518 (1020)
+++||+ .-+++.+ |+-+..++.. .|..-.|+ ..+-+-.. ..|+.. +.
T Consensus 453 GLTATLvREDdKI~DLNFLIGPKlYEAnWmdL~~kGhIA~VqCaEVWCpMt~eFy~eYL~~~t~kr~lLyvMNP~KFraC 532 (776)
T KOG1123|consen 453 GLTATLVREDDKITDLNFLIGPKLYEANWMDLQKKGHIAKVQCAEVWCPMTPEFYREYLRENTRKRMLLYVMNPNKFRAC 532 (776)
T ss_pred cceeEEeeccccccccceeecchhhhccHHHHHhCCceeEEeeeeeecCCCHHHHHHHHhhhhhhhheeeecCcchhHHH
Confidence 889999 2233332 2222211111 01111111 11111111 122221 12
Q ss_pred HHHHHHhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHHHhcC-CCeEEE
Q 001722 519 KQAMTIHITSPPGDILIFMTGQDEIEAACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKE-GTRKCI 597 (1020)
Q Consensus 519 ~~~l~i~~~~~~g~ILVFl~g~~eie~l~~~L~e~l~~l~~~~~~~~~~l~vl~lhs~L~~~eq~~I~~~f~~-g~rkVI 597 (1020)
.-++..|.. .+.+||||-...- .|.++.-++ .--.+||..++.+|.+|++.|.- ..+.-|
T Consensus 533 qfLI~~HE~-RgDKiIVFsDnvf-------ALk~YAikl-----------~KpfIYG~Tsq~ERm~ILqnFq~n~~vNTI 593 (776)
T KOG1123|consen 533 QFLIKFHER-RGDKIIVFSDNVF-------ALKEYAIKL-----------GKPFIYGPTSQNERMKILQNFQTNPKVNTI 593 (776)
T ss_pred HHHHHHHHh-cCCeEEEEeccHH-------HHHHHHHHc-----------CCceEECCCchhHHHHHHHhcccCCccceE
Confidence 223334433 4668999975432 233322221 22357999999999999999974 467889
Q ss_pred EecchhhccCCCCCeeEEEEcCCccceeccCCCCcccccccccCHHHHHHHhcccCCCCC-------CEEEEccChhhH
Q 001722 598 VATNIAETSLTVDGIFYVIDTGYGKMKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTGP-------GTCYRLYTESAY 669 (1020)
Q Consensus 598 VATniaEtGItIp~V~~VID~G~~K~~~yd~~~g~~~L~~~piS~as~~QRaGRAGR~g~-------G~cyrLyt~~~~ 669 (1020)
+-.-++.+|||+|..++.|..- ..--|+-+-.||.||.=|... ...|.|.+++..
T Consensus 594 FlSKVgDtSiDLPEAnvLIQIS-----------------SH~GSRRQEAQRLGRILRAKk~~de~fnafFYSLVS~DTq 655 (776)
T KOG1123|consen 594 FLSKVGDTSIDLPEANVLIQIS-----------------SHGGSRRQEAQRLGRILRAKKRNDEEFNAFFYSLVSKDTQ 655 (776)
T ss_pred EEeeccCccccCCcccEEEEEc-----------------ccccchHHHHHHHHHHHHHhhcCccccceeeeeeeecchH
Confidence 9999999999999999999732 133567778899998887652 346777766543
No 147
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=98.92 E-value=5.1e-07 Score=110.02 Aligned_cols=60 Identities=15% Similarity=0.138 Sum_probs=49.7
Q ss_pred HHHHHHHHhCCeEEEEecCCCchHHHHHHHHHHhccc-CCCEEEEEcccHHHHHHHHHHHH
Q 001722 329 DELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYT-TNGIVGCTQPRRVAAMSVAKRVS 388 (1020)
Q Consensus 329 ~eil~~i~~~q~vII~gpTGSGKTtqi~q~Lle~~~~-~~~~Il~tqPrR~lA~qva~rva 388 (1020)
+.+.+++.+++++++.|+||+|||.+++.+++..... .+.+|+|+.||+.|+.|+.+.+.
T Consensus 7 ~~i~~al~~~~~lliEA~TGtGKTlAYLlpal~~~~~~~~~rvlIstpT~~Lq~Ql~~~l~ 67 (636)
T TIGR03117 7 LNCLTSLRQKRIGMLEASTGVGKTLAMIMAALTMLKERPDQKIAIAVPTLALMGQLWSELE 67 (636)
T ss_pred HHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHHHHhccCceEEEECCcHHHHHHHHHHHH
Confidence 4566777889999999999999999988887765442 35789999999999999987543
No 148
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=98.85 E-value=1.5e-06 Score=104.36 Aligned_cols=171 Identities=22% Similarity=0.291 Sum_probs=118.0
Q ss_pred CCEEEEcCCHHHHHHHHHHHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHHHhcCCCe--EEEEecchhhccCC
Q 001722 531 GDILIFMTGQDEIEAACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTR--KCIVATNIAETSLT 608 (1020)
Q Consensus 531 g~ILVFl~g~~eie~l~~~L~e~l~~l~~~~~~~~~~l~vl~lhs~L~~~eq~~I~~~f~~g~r--kVIVATniaEtGIt 608 (1020)
..+|+|-.++.-+.-+-..|.. ..++..+-+.|..|...|..+.+.|.++.. -.|++|-+..-|+|
T Consensus 547 ~rvllFsqs~~mLdilE~fL~~------------~~~ysylRmDGtT~~~~R~~lVd~Fne~~s~~VFLLTTrvGGLGlN 614 (923)
T KOG0387|consen 547 DRVLLFSQSRQMLDILESFLRR------------AKGYSYLRMDGTTPAALRQKLVDRFNEDESIFVFLLTTRVGGLGLN 614 (923)
T ss_pred CEEEEehhHHHHHHHHHHHHHh------------cCCceEEEecCCCccchhhHHHHhhcCCCceEEEEEEecccccccc
Confidence 3688887776665555444431 358899999999999999999999987653 44578899999999
Q ss_pred CCCeeEEEEcCCccceeccCCCCcccccccccCHHHHHHHhcccCCCCCCEEEEccChhhHhhccCCCCcchhcccchhH
Q 001722 609 VDGIFYVIDTGYGKMKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTGPGTCYRLYTESAYLNEMLPSPVPEIQRTNLGN 688 (1020)
Q Consensus 609 Ip~V~~VID~G~~K~~~yd~~~g~~~L~~~piS~as~~QRaGRAGR~g~G~cyrLyt~~~~~~~m~~~~~PEI~r~~L~~ 688 (1020)
+-+.+-||- |||.-+ |..-.++.-|+=|-|-...=.+|||.|....++... .-.|....|.+
T Consensus 615 LTgAnRVII--------fDPdWN-------PStD~QAreRawRiGQkkdV~VYRL~t~gTIEEkiY---~rQI~Kq~Ltn 676 (923)
T KOG0387|consen 615 LTGANRVII--------FDPDWN-------PSTDNQARERAWRIGQKKDVVVYRLMTAGTIEEKIY---HRQIFKQFLTN 676 (923)
T ss_pred cccCceEEE--------ECCCCC-------CccchHHHHHHHhhcCccceEEEEEecCCcHHHHHH---HHHHHHHHHHH
Confidence 998887773 887543 666677888888888877889999999776543221 12466667777
Q ss_pred HHHHHhhcccCcccCCCCCCCCChhhHHHHHHHHHHhcCccCCCCccHHHHHhhcCC
Q 001722 689 VVLLLKSLKIDNLLDFDFMDPPPQENILNSMYQLWVLGALNNVGALTDLGWKMVEFP 745 (1020)
Q Consensus 689 vvL~lk~lgi~~~~~f~~~dpP~~~~i~~al~~L~~lgaLd~~g~LT~lG~~ma~lP 745 (1020)
.+|.=+.. -.|+. .+-+..|..++---.+|..|..|-......
T Consensus 677 ~il~~p~q-------~RfF~-------~~dl~dLFsl~~~G~~~~~te~~~~~~~~~ 719 (923)
T KOG0387|consen 677 RILKNPEQ-------RRFFK-------GNDLHDLFSLKDFGDDGESTETSSKEVHRN 719 (923)
T ss_pred HHhcCHHH-------hhhcc-------cccHHHHhCCCCCCcCcchhhhhhhhhhhh
Confidence 66533221 11111 123566666665445778888887776654
No 149
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=98.77 E-value=9.3e-07 Score=105.56 Aligned_cols=114 Identities=18% Similarity=0.180 Sum_probs=85.7
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHHHhcCC---CeEEEEecchhhc
Q 001722 529 PPGDILIFMTGQDEIEAACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEG---TRKCIVATNIAET 605 (1020)
Q Consensus 529 ~~g~ILVFl~g~~eie~l~~~L~e~l~~l~~~~~~~~~~l~vl~lhs~L~~~eq~~I~~~f~~g---~rkVIVATniaEt 605 (1020)
.+..||||- ..-.+-..|..++ ..-++...-+.|+++.++|...++.|... +.-.+++|-...-
T Consensus 486 ~GhRVLIFS----Qmt~mLDILeDyc---------~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAGGL 552 (971)
T KOG0385|consen 486 QGHRVLIFS----QMTRMLDILEDYC---------MLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRAGGL 552 (971)
T ss_pred CCCeEEEeH----HHHHHHHHHHHHH---------HhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEecccccc
Confidence 345678884 2233334444332 12477888999999999999999999543 3456789999999
Q ss_pred cCCCCCeeEEEEcCCccceeccCCCCcccccccccCHHHHHHHhcccCCCCCCEEEEccChhhHh
Q 001722 606 SLTVDGIFYVIDTGYGKMKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTGPGTCYRLYTESAYL 670 (1020)
Q Consensus 606 GItIp~V~~VID~G~~K~~~yd~~~g~~~L~~~piS~as~~QRaGRAGR~g~G~cyrLyt~~~~~ 670 (1020)
|||+-..+.||- ||+.- .|..--+|.+|+-|.|-..|-++|||+|+...+
T Consensus 553 GINL~aADtVIl--------yDSDW-------NPQ~DLQAmDRaHRIGQ~K~V~V~RLitentVE 602 (971)
T KOG0385|consen 553 GINLTAADTVIL--------YDSDW-------NPQVDLQAMDRAHRIGQKKPVVVYRLITENTVE 602 (971)
T ss_pred ccccccccEEEE--------ecCCC-------CchhhhHHHHHHHhhCCcCceEEEEEeccchHH
Confidence 999999999984 66432 366667889999999999999999999987654
No 150
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=98.77 E-value=5.2e-06 Score=103.61 Aligned_cols=176 Identities=19% Similarity=0.224 Sum_probs=103.1
Q ss_pred eEEEEeccCCH-HHHHHH---hCC-----CCeEeecCcccce---eeeecC----C--CchhHHHHHHHHHHHHhhcCCC
Q 001722 469 KLIVTSATLNA-QKFSDF---FGS-----VPIFHIPGRTFPV---NTLYSK----T--PCEDYVEAAVKQAMTIHITSPP 530 (1020)
Q Consensus 469 klIlmSATld~-~~f~~~---f~~-----~pvi~i~gr~~pV---~i~y~~----~--~~~dyl~~av~~~l~i~~~~~~ 530 (1020)
.+|++|||+.+ ..|..| +|= ...+.++ ..|+. ...|.. . ...+|.......+..+.. .+
T Consensus 458 ~vIltSATL~~~~~f~~~~~~lGL~~~~~~~~~~~~-SpF~~~~q~~l~vp~~~~~p~~~~~~~~~~~~~i~~l~~--~~ 534 (697)
T PRK11747 458 GAVLTSATLRSLNSFDRFQEQSGLPEKDGDRFLALP-SPFDYPNQGKLVIPKMRAEPDNEEAHTAEMAEFLPELLE--KH 534 (697)
T ss_pred EEEEEeeeCCCCCchHHHHHHcCCCCCCCceEEEcC-CCCCHHHccEEEeCCCCCCCCCcHHHHHHHHHHHHHHHh--cC
Confidence 57899999954 344322 331 1223333 23332 222322 1 234577676666666654 35
Q ss_pred CCEEEEcCCHHHHHHHHHHHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHHHhc----CCCeEEEEecchhhcc
Q 001722 531 GDILIFMTGQDEIEAACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAK----EGTRKCIVATNIAETS 606 (1020)
Q Consensus 531 g~ILVFl~g~~eie~l~~~L~e~l~~l~~~~~~~~~~l~vl~lhs~L~~~eq~~I~~~f~----~g~rkVIVATniaEtG 606 (1020)
|.+|||+|+....+.++..|.... ...+ ..++.. .+..+++.|+ .+...|+++|..+..|
T Consensus 535 gg~LVlFtSy~~l~~v~~~l~~~~------------~~~l-l~Q~~~---~~~~ll~~f~~~~~~~~~~VL~g~~sf~EG 598 (697)
T PRK11747 535 KGSLVLFASRRQMQKVADLLPRDL------------RLML-LVQGDQ---PRQRLLEKHKKRVDEGEGSVLFGLQSFAEG 598 (697)
T ss_pred CCEEEEeCcHHHHHHHHHHHHHhc------------CCcE-EEeCCc---hHHHHHHHHHHHhccCCCeEEEEecccccc
Confidence 569999999999999988876421 1222 234543 3445665554 4677899999999999
Q ss_pred CCCCC--eeEEEEcCCccceeccCC----------CCccccc--ccccCHHHHHHHhcccCCCCC--CEEEEc
Q 001722 607 LTVDG--IFYVIDTGYGKMKVYNPK----------MGMDALQ--VFPVSRAAADQRAGRAGRTGP--GTCYRL 663 (1020)
Q Consensus 607 ItIp~--V~~VID~G~~K~~~yd~~----------~g~~~L~--~~piS~as~~QRaGRAGR~g~--G~cyrL 663 (1020)
||+|| ++.||-.|+--...-||. .|-+... ..|.-.-...|-+||.=|+.. |..+.|
T Consensus 599 VD~pGd~l~~vII~kLPF~~p~dp~~~ar~~~~~~~g~~~F~~~~lP~A~~kl~Qg~GRlIRs~~D~G~i~il 671 (697)
T PRK11747 599 LDLPGDYLTQVIITKIPFAVPDSPVEATLAEWLKSRGGNPFMEISVPDASFKLIQAVGRLIRSEQDRGRVTIL 671 (697)
T ss_pred ccCCCCceEEEEEEcCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccccccCCceEEEEEE
Confidence 99987 677876665322111221 1111111 124444567899999988763 776655
No 151
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.76 E-value=1.3e-06 Score=109.25 Aligned_cols=185 Identities=15% Similarity=0.126 Sum_probs=103.9
Q ss_pred eEEEEeccC-CHHHHHHHhCCC-CeEeecCcccc-----------------eeeeecCCCchhHHHHHHHHHHHHhhcCC
Q 001722 469 KLIVTSATL-NAQKFSDFFGSV-PIFHIPGRTFP-----------------VNTLYSKTPCEDYVEAAVKQAMTIHITSP 529 (1020)
Q Consensus 469 klIlmSATl-d~~~f~~~f~~~-pvi~i~gr~~p-----------------V~i~y~~~~~~dyl~~av~~~l~i~~~~~ 529 (1020)
.+|+||||| ..+.|.+.++-. +.....+..+| +...|......+++......+..+.. .-
T Consensus 443 svil~SgTL~p~~~~~~~Lg~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~r~~~~~~~~l~~~i~~~~~-~~ 521 (705)
T TIGR00604 443 SVILASGTLSPLDAFPRNLGFNPVSQDSPTHILKRENLLTLIVTRGSDQVPLSSTFEIRNDPSLVRNLGELLVEFSK-II 521 (705)
T ss_pred EEEEecccCCcHHHHHHHhCCCCccceecCcccchHHeEEEEEeeCCCCCeeeeehhccCCHHHHHHHHHHHHHHhh-cC
Confidence 578999999 466777777631 22111112222 11122222234566555555544433 34
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHHH--HHHhhccccCCCCCeEEEEecCCCCHHHHHHHHHHhcC----CCeEEEEec--c
Q 001722 530 PGDILIFMTGQDEIEAACFALKER--MEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKE----GTRKCIVAT--N 601 (1020)
Q Consensus 530 ~g~ILVFl~g~~eie~l~~~L~e~--l~~l~~~~~~~~~~l~vl~lhs~L~~~eq~~I~~~f~~----g~rkVIVAT--n 601 (1020)
+|.+|||+|+....+.+...+.+. +..+. ....+.+-+ .+. .++..+++.|.. +.--|++|+ .
T Consensus 522 pgg~lvfFpSy~~l~~v~~~~~~~~~~~~i~-----~~k~i~~E~--~~~--~~~~~~l~~f~~~~~~~~gavL~av~gG 592 (705)
T TIGR00604 522 PDGIVVFFPSYSYLENIVSTWKEMGILENIE-----KKKLIFVET--KDA--QETSDALERYKQAVSEGRGAVLLSVAGG 592 (705)
T ss_pred CCcEEEEccCHHHHHHHHHHHHhcCHHHHHh-----cCCCEEEeC--CCc--chHHHHHHHHHHHHhcCCceEEEEecCC
Confidence 689999999999999998877642 11110 001222212 111 456677877743 455699999 8
Q ss_pred hhhccCCCCC--eeEEEEcCCccceeccCCCC--ccc-----------ccccccCHHHHHHHhcccCCCCC--CEEEEc
Q 001722 602 IAETSLTVDG--IFYVIDTGYGKMKVYNPKMG--MDA-----------LQVFPVSRAAADQRAGRAGRTGP--GTCYRL 663 (1020)
Q Consensus 602 iaEtGItIp~--V~~VID~G~~K~~~yd~~~g--~~~-----------L~~~piS~as~~QRaGRAGR~g~--G~cyrL 663 (1020)
.+..|||++| .+.||-.|+--....||... +.. ........-...|-+||+=|... |..+.+
T Consensus 593 k~sEGIDf~~~~~r~ViivGlPf~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~a~~~v~QaiGR~IR~~~D~G~iill 671 (705)
T TIGR00604 593 KVSEGIDFCDDLGRAVIMVGIPYEYTESRILLARLEFLRDQYPIRENQDFYEFDAMRAVNQAIGRVIRHKDDYGSIVLL 671 (705)
T ss_pred cccCccccCCCCCcEEEEEccCCCCCCCHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHhCccccCcCceEEEEEE
Confidence 8999999987 57787788754332232110 000 01111223456799999999885 554443
No 152
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=98.62 E-value=6.8e-06 Score=102.24 Aligned_cols=179 Identities=20% Similarity=0.235 Sum_probs=102.1
Q ss_pred eEEEEeccCC-HHHHHHHhCC---CCeE--eecCcccceee---eecC----CCc-hhHHHHHHHHHHHHhhcCCCCCEE
Q 001722 469 KLIVTSATLN-AQKFSDFFGS---VPIF--HIPGRTFPVNT---LYSK----TPC-EDYVEAAVKQAMTIHITSPPGDIL 534 (1020)
Q Consensus 469 klIlmSATld-~~~f~~~f~~---~pvi--~i~gr~~pV~i---~y~~----~~~-~dyl~~av~~~l~i~~~~~~g~IL 534 (1020)
.+|+|||||. .+.|..+.+. ...+ ......|+... .+.. .+. ..+.......+..+. ...+|.+|
T Consensus 405 ~~vl~SaTL~~~~~f~~~~~~~~~~~~~~~~~~~spf~~~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~l 483 (654)
T COG1199 405 SVVLTSATLSPLDSFSSLLGLLGLEEKLRFLSLPSPFNYEEQGQLYVPTDLPEPREPELLAKLAAYLREIL-KASPGGVL 483 (654)
T ss_pred cEEEeeeeccCCCcHHHHHHHcCCccccceeccCCCCChhhcceEeccccCCCCCChHHHHHHHHHHHHHH-hhcCCCEE
Confidence 4899999993 4445544432 1111 22223222111 2221 111 134444444444333 34467999
Q ss_pred EEcCCHHHHHHHHHHHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHHHhcCCCe-EEEEecchhhccCCCCCe-
Q 001722 535 IFMTGQDEIEAACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTR-KCIVATNIAETSLTVDGI- 612 (1020)
Q Consensus 535 VFl~g~~eie~l~~~L~e~l~~l~~~~~~~~~~l~vl~lhs~L~~~eq~~I~~~f~~g~r-kVIVATniaEtGItIp~V- 612 (1020)
||+|+.+..+.+.+.+.... ....+..++.-+.+ .+++.|..+.- -++|+|..+..|||++|=
T Consensus 484 vlF~Sy~~l~~~~~~~~~~~------------~~~~v~~q~~~~~~---~~l~~f~~~~~~~~lv~~gsf~EGVD~~g~~ 548 (654)
T COG1199 484 VLFPSYEYLKRVAERLKDER------------STLPVLTQGEDERE---ELLEKFKASGEGLILVGGGSFWEGVDFPGDA 548 (654)
T ss_pred EEeccHHHHHHHHHHHhhcC------------ccceeeecCCCcHH---HHHHHHHHhcCCeEEEeeccccCcccCCCCC
Confidence 99999999998888775421 11345566666666 34445544333 899999999999999875
Q ss_pred -eEEEEcCCccce----------eccCCCCccc--ccccccCHHHHHHHhcccCCCCC--CEEEEc
Q 001722 613 -FYVIDTGYGKMK----------VYNPKMGMDA--LQVFPVSRAAADQRAGRAGRTGP--GTCYRL 663 (1020)
Q Consensus 613 -~~VID~G~~K~~----------~yd~~~g~~~--L~~~piS~as~~QRaGRAGR~g~--G~cyrL 663 (1020)
+.||-.|+--.. .|..+.|.+. ....|...-...|-+||+=|.-. |.++.|
T Consensus 549 l~~vvI~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~ivll 614 (654)
T COG1199 549 LRLVVIVGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIVLL 614 (654)
T ss_pred eeEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEEEEe
Confidence 455544542221 1222222111 22345566788899999999663 777766
No 153
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=98.60 E-value=2.8e-06 Score=104.16 Aligned_cols=86 Identities=19% Similarity=0.271 Sum_probs=67.1
Q ss_pred CeEEEEecCCCCHHHHHHHHHHhcC--CCeEE-EEecchhhccCCCCCeeEEEEcCCccceeccCCCCcccccccccCHH
Q 001722 567 ELLILPIYSQLPADLQAKIFEKAKE--GTRKC-IVATNIAETSLTVDGIFYVIDTGYGKMKVYNPKMGMDALQVFPVSRA 643 (1020)
Q Consensus 567 ~l~vl~lhs~L~~~eq~~I~~~f~~--g~rkV-IVATniaEtGItIp~V~~VID~G~~K~~~yd~~~g~~~L~~~piS~a 643 (1020)
+..++.+||.|+..+|+++.+.|.+ +.-+| +++|-+.+.||++-|-.-||- ||+ .-++|
T Consensus 619 g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil--------~D~----------dWNPa 680 (776)
T KOG0390|consen 619 GYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLIL--------FDP----------DWNPA 680 (776)
T ss_pred CceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEE--------eCC----------CCCch
Confidence 7889999999999999999999954 33345 456778889999988877774 773 45566
Q ss_pred HHHHHhcccCCCC---CCEEEEccChhhHh
Q 001722 644 AADQRAGRAGRTG---PGTCYRLYTESAYL 670 (1020)
Q Consensus 644 s~~QRaGRAGR~g---~G~cyrLyt~~~~~ 670 (1020)
.=.|-++||=|.| +-..|||.+....+
T Consensus 681 ~d~QAmaR~~RdGQKk~v~iYrLlatGtiE 710 (776)
T KOG0390|consen 681 VDQQAMARAWRDGQKKPVYIYRLLATGTIE 710 (776)
T ss_pred hHHHHHHHhccCCCcceEEEEEeecCCCch
Confidence 7778888888777 57889998866543
No 154
>COG4889 Predicted helicase [General function prediction only]
Probab=98.45 E-value=1.8e-06 Score=103.82 Aligned_cols=310 Identities=17% Similarity=0.189 Sum_probs=172.3
Q ss_pred cHHHHHHHHHHHHh----CCeEEEEecCCCchHHHHHHHHHHhcccCCCEEEEEcccHHHHHHHHHHHHHHhccccCCEE
Q 001722 324 IFSVRDELLQVIRE----NQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELGDKV 399 (1020)
Q Consensus 324 i~~~q~eil~~i~~----~q~vII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~lA~qva~rva~e~~~~lG~~V 399 (1020)
..++|++++++..+ |..-=+++..|+|||...+.. .|..- ..+|++++|...|..|..+....+-...+-
T Consensus 162 ~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsLki-sEala--~~~iL~LvPSIsLLsQTlrew~~~~~l~~~--- 235 (1518)
T COG4889 162 PRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSLKI-SEALA--AARILFLVPSISLLSQTLREWTAQKELDFR--- 235 (1518)
T ss_pred CChhHHHHHHHHHhhcccccCCcEEEecCCCccchHHHH-HHHHh--hhheEeecchHHHHHHHHHHHhhccCccce---
Confidence 45678887777654 333445667899999887653 33322 268999999999999988877665332221
Q ss_pred EEEEeeeecCC--------------------------------CCccEEEEchHHHHHHHh-cCCCCCCccEEEEeCCCc
Q 001722 400 GYAIRFEDVTG--------------------------------PSTLIKYMTDGVLLRETL-KDSDLDKYRVIVMDEAHE 446 (1020)
Q Consensus 400 Gy~ir~e~~~s--------------------------------~~t~I~~~T~g~LLr~ll-~d~~L~~~s~IIIDEaHE 446 (1020)
...|..++..+ .+--|+|+|...|.+.-- ....+..+++||.||||
T Consensus 236 a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~~i~eAQe~G~~~fDliicDEAH- 314 (1518)
T COG4889 236 ASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLPRIKEAQEAGLDEFDLIICDEAH- 314 (1518)
T ss_pred eEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccchHHHHHHHHcCCCCccEEEecchh-
Confidence 11111111111 134578888888776432 34568899999999999
Q ss_pred CCCCc----cH--HHHHHHHHHhhcCCceEEEEeccCCH-----HHHHH-------------HhCCCCeEeecC------
Q 001722 447 RSLST----DV--LFGILKKVVARRRDFKLIVTSATLNA-----QKFSD-------------FFGSVPIFHIPG------ 496 (1020)
Q Consensus 447 Rs~~t----D~--ll~lLk~il~~r~~lklIlmSATld~-----~~f~~-------------~f~~~pvi~i~g------ 496 (1020)
|+... |- .+..+..- ..-+..|-+-|+||+-. +.=++ .|| |.|+--|
T Consensus 315 RTtGa~~a~dd~saFt~vHs~-~niKa~kRlYmTATPkiy~eS~K~kAkd~s~~l~SMDDe~~fG--eef~rl~FgeAv~ 391 (1518)
T COG4889 315 RTTGATLAGDDKSAFTRVHSD-QNIKAAKRLYMTATPKIYSESSKAKAKDHSAELSSMDDELTFG--EEFHRLGFGEAVE 391 (1518)
T ss_pred ccccceecccCcccceeecCc-chhHHHHhhhcccCchhhchhhhhhhhhccceeeccchhhhhc--hhhhcccHHHHHH
Confidence 44321 10 00000000 00012355778888721 00000 111 1111000
Q ss_pred ----cccceeeeecC-------------CCchhHHHHHHHHHHHHhh----c--------C------CCCCEEEEcCCHH
Q 001722 497 ----RTFPVNTLYSK-------------TPCEDYVEAAVKQAMTIHI----T--------S------PPGDILIFMTGQD 541 (1020)
Q Consensus 497 ----r~~pV~i~y~~-------------~~~~dyl~~av~~~l~i~~----~--------~------~~g~ILVFl~g~~ 541 (1020)
..|.|-+.-.. .+.......-+..++-+|. . . +-...+-||.+.+
T Consensus 392 rdlLTDYKVmvlaVd~~~i~~~~~~~~~~~~~~L~~dd~~kIvG~wnGlakr~g~~n~~~~~~~d~ap~~RAIaF~k~I~ 471 (1518)
T COG4889 392 RDLLTDYKVMVLAVDKEVIAGVLQSVLSGPSKGLALDDVSKIVGCWNGLAKRNGEDNDLKNIKADTAPMQRAIAFAKDIK 471 (1518)
T ss_pred hhhhccceEEEEEechhhhhhhhhhhccCcccccchhhhhhhhhhhhhhhhhccccccccCCcCCchHHHHHHHHHHhhH
Confidence 01222221111 1111111111111221211 0 0 1123467888777
Q ss_pred HHHHHHHHHHHHHHHhhccccCCCCC--eEEEEecCCCCHHHHHHHHH---HhcCCCeEEEEecchhhccCCCCCeeEEE
Q 001722 542 EIEAACFALKERMEQLISSTTREVPE--LLILPIYSQLPADLQAKIFE---KAKEGTRKCIVATNIAETSLTVDGIFYVI 616 (1020)
Q Consensus 542 eie~l~~~L~e~l~~l~~~~~~~~~~--l~vl~lhs~L~~~eq~~I~~---~f~~g~rkVIVATniaEtGItIp~V~~VI 616 (1020)
.-..+++.+..-++.+......+..+ +.+-.+.|.|..-+|..... .|++...|||----.+..|||+|..+-||
T Consensus 472 tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~neckIlSNaRcLSEGVDVPaLDsVi 551 (1518)
T COG4889 472 TSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELKNTFEPNECKILSNARCLSEGVDVPALDSVI 551 (1518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHhccCCCCcchheeeccchhhhcCCCccccceEE
Confidence 77777766655444433222223344 44556678999988866554 44677888887777899999999999999
Q ss_pred EcCCccceeccCCCCcccccccccCHHHHHHHhcccCCCCCCEEE
Q 001722 617 DTGYGKMKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTGPGTCY 661 (1020)
Q Consensus 617 D~G~~K~~~yd~~~g~~~L~~~piS~as~~QRaGRAGR~g~G~cy 661 (1020)
- |||+. |....+|-+||.-|..+|+-|
T Consensus 552 F--------f~pr~----------smVDIVQaVGRVMRKa~gK~y 578 (1518)
T COG4889 552 F--------FDPRS----------SMVDIVQAVGRVMRKAKGKKY 578 (1518)
T ss_pred E--------ecCch----------hHHHHHHHHHHHHHhCcCCcc
Confidence 4 88764 456779999999999988744
No 155
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=98.44 E-value=1.7e-05 Score=91.15 Aligned_cols=302 Identities=19% Similarity=0.229 Sum_probs=160.7
Q ss_pred cHHHHHH-HHHHHHhCCeEEEEecCCCchHHHHHHHHHHhcccCCCEEEEEcccHHHHHHHHHHHHHHhccccCCE--EE
Q 001722 324 IFSVRDE-LLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELGDK--VG 400 (1020)
Q Consensus 324 i~~~q~e-il~~i~~~q~vII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~lA~qva~rva~e~~~~lG~~--VG 400 (1020)
+.++|.+ +.-++..+-.++|.-+-|=|||.|+..... .|.....+++++|-- +-..+++++..-++.. |-
T Consensus 199 LlPFQreGv~faL~RgGR~llADeMGLGKTiQAlaIA~--yyraEwplliVcPAs-----vrftWa~al~r~lps~~pi~ 271 (689)
T KOG1000|consen 199 LLPFQREGVIFALERGGRILLADEMGLGKTIQALAIAR--YYRAEWPLLIVCPAS-----VRFTWAKALNRFLPSIHPIF 271 (689)
T ss_pred hCchhhhhHHHHHhcCCeEEEecccccchHHHHHHHHH--HHhhcCcEEEEecHH-----HhHHHHHHHHHhcccccceE
Confidence 4566665 445677888999999999999999754332 233345678888843 2233344443333322 21
Q ss_pred EEEeeeecC---CCCccEEEEchHHHHHHHhcCCCC-CCccEEEEeCCCc----CCCCccHHHHHHHHHHhhcCCceEEE
Q 001722 401 YAIRFEDVT---GPSTLIKYMTDGVLLRETLKDSDL-DKYRVIVMDEAHE----RSLSTDVLFGILKKVVARRRDFKLIV 472 (1020)
Q Consensus 401 y~ir~e~~~---s~~t~I~~~T~g~LLr~ll~d~~L-~~~s~IIIDEaHE----Rs~~tD~ll~lLk~il~~r~~lklIl 472 (1020)
...+..+.. .....|.+++.++|... .+... .++.+||+||.|. +.-.+-..+.+++.+ .++|+
T Consensus 272 vv~~~~D~~~~~~t~~~v~ivSye~ls~l--~~~l~~~~~~vvI~DEsH~Lk~sktkr~Ka~~dllk~a------khvIL 343 (689)
T KOG1000|consen 272 VVDKSSDPLPDVCTSNTVAIVSYEQLSLL--HDILKKEKYRVVIFDESHMLKDSKTKRTKAATDLLKVA------KHVIL 343 (689)
T ss_pred EEecccCCccccccCCeEEEEEHHHHHHH--HHHHhcccceEEEEechhhhhccchhhhhhhhhHHHHh------hheEE
Confidence 122222211 11245778888876432 22223 3489999999994 223334444555443 46899
Q ss_pred EeccCCHHHHHHHhC-----------CCC---eEeecCccccee------------------------------------
Q 001722 473 TSATLNAQKFSDFFG-----------SVP---IFHIPGRTFPVN------------------------------------ 502 (1020)
Q Consensus 473 mSATld~~~f~~~f~-----------~~p---vi~i~gr~~pV~------------------------------------ 502 (1020)
+|.|+....=.+.|. +-. +-...|+..+.-
T Consensus 344 LSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~~Dykg~tnl~EL~~lL~k~lMIRRlK~dvL~qLPpK 423 (689)
T KOG1000|consen 344 LSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFCFDYKGCTNLEELAALLFKRLMIRRLKADVLKQLPPK 423 (689)
T ss_pred ecCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCccccceeeecCCCCCHHHHHHHHHHHHHHHHHHHHHHhhCCcc
Confidence 999994332221111 100 000011111111
Q ss_pred ---eeecCCC-----chhHHHHHHH------------------------------HHHHHh---hcCCCCCEEEEcCCHH
Q 001722 503 ---TLYSKTP-----CEDYVEAAVK------------------------------QAMTIH---ITSPPGDILIFMTGQD 541 (1020)
Q Consensus 503 ---i~y~~~~-----~~dyl~~av~------------------------------~~l~i~---~~~~~g~ILVFl~g~~ 541 (1020)
+.|.... ..+.+.++.+ .-+..| ...++.+.|||+.-+.
T Consensus 424 rr~Vv~~~~gr~da~~~~lv~~a~~~t~~~~~e~~~~~l~l~y~~tgiaK~~av~eyi~~~~~l~d~~~~KflVFaHH~~ 503 (689)
T KOG1000|consen 424 RREVVYVSGGRIDARMDDLVKAAADYTKVNSMERKHESLLLFYSLTGIAKAAAVCEYILENYFLPDAPPRKFLVFAHHQI 503 (689)
T ss_pred ceEEEEEcCCccchHHHHHHHHhhhcchhhhhhhhhHHHHHHHHHhcccccHHHHHHHHhCcccccCCCceEEEEehhHH
Confidence 1111111 0111111111 000000 1123456777777666
Q ss_pred HHHHHHHHHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHHHhcCC--CeEEEEecchhhccCCCCCeeEEEEcC
Q 001722 542 EIEAACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEG--TRKCIVATNIAETSLTVDGIFYVIDTG 619 (1020)
Q Consensus 542 eie~l~~~L~e~l~~l~~~~~~~~~~l~vl~lhs~L~~~eq~~I~~~f~~g--~rkVIVATniaEtGItIp~V~~VID~G 619 (1020)
-.+.+...+.++ ++..+-+.|..++..|....+.|... ..--|++-..+.+|+|+..-..||-.-
T Consensus 504 vLd~Iq~~~~~r-------------~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVFaE 570 (689)
T KOG1000|consen 504 VLDTIQVEVNKR-------------KVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVFAE 570 (689)
T ss_pred HHHHHHHHHHHc-------------CCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeeeccceEEEEE
Confidence 665555555432 45556678999999999999988643 334467778899999999999998432
Q ss_pred CccceeccCCCCcccccccccCHHHHHHHhcccCCCCCCEEEEccChhh
Q 001722 620 YGKMKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTGPGTCYRLYTESA 668 (1020)
Q Consensus 620 ~~K~~~yd~~~g~~~L~~~piS~as~~QRaGRAGR~g~G~cyrLyt~~~ 668 (1020)
+ .|| |--.-++.-|+-|.|-+..-..|-|+-+..
T Consensus 571 L----~wn-----------PgvLlQAEDRaHRiGQkssV~v~ylvAKgT 604 (689)
T KOG1000|consen 571 L----HWN-----------PGVLLQAEDRAHRIGQKSSVFVQYLVAKGT 604 (689)
T ss_pred e----cCC-----------CceEEechhhhhhccccceeeEEEEEecCc
Confidence 2 233 222234555666666666534444554443
No 156
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=98.28 E-value=2.3e-05 Score=98.17 Aligned_cols=137 Identities=17% Similarity=0.187 Sum_probs=93.1
Q ss_pred CCCCCEEEEcCCHHHHHHHHHHHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHHHhcC---CCeEEEEecchhh
Q 001722 528 SPPGDILIFMTGQDEIEAACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKE---GTRKCIVATNIAE 604 (1020)
Q Consensus 528 ~~~g~ILVFl~g~~eie~l~~~L~e~l~~l~~~~~~~~~~l~vl~lhs~L~~~eq~~I~~~f~~---g~rkVIVATniaE 604 (1020)
..+..||||-. .-.+-..|.++|.. -++..--|.|+++.+.|+..++.|.. .....|+||-...
T Consensus 697 ~~GHrVLIFSQ----MVRmLDIL~eYL~~---------r~ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRAGG 763 (1373)
T KOG0384|consen 697 EGGHRVLIFSQ----MVRMLDILAEYLSL---------RGYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGG 763 (1373)
T ss_pred cCCceEEEhHH----HHHHHHHHHHHHHH---------cCCcceeccCCcchHHHHHHHHhccCCCCCceEEEEecccCc
Confidence 34678999953 33444555555432 25667778999999999999999953 3468889999999
Q ss_pred ccCCCCCeeEEEEcCCccceeccCCCCcccccccccCHHHHHHHhcccCCCCCCEEEEccChhhHhhccCCCCcchhccc
Q 001722 605 TSLTVDGIFYVIDTGYGKMKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTGPGTCYRLYTESAYLNEMLPSPVPEIQRT 684 (1020)
Q Consensus 605 tGItIp~V~~VID~G~~K~~~yd~~~g~~~L~~~piS~as~~QRaGRAGR~g~G~cyrLyt~~~~~~~m~~~~~PEI~r~ 684 (1020)
-|||+-..+.||- ||+.- .|-.--+|.=|+-|.|-...-.+|||.|+..++.+|.+-. -+..
T Consensus 764 LGINLatADTVII--------FDSDW-------NPQNDLQAqARaHRIGQkk~VnVYRLVTk~TvEeEilERA---k~Km 825 (1373)
T KOG0384|consen 764 LGINLATADTVII--------FDSDW-------NPQNDLQAQARAHRIGQKKHVNVYRLVTKNTVEEEILERA---KLKM 825 (1373)
T ss_pred ccccccccceEEE--------eCCCC-------CcchHHHHHHHHHhhcccceEEEEEEecCCchHHHHHHHH---HHHh
Confidence 9999988887773 66421 1443344445555555555678999999999877553211 1234
Q ss_pred chhHHHHHHhh
Q 001722 685 NLGNVVLLLKS 695 (1020)
Q Consensus 685 ~L~~vvL~lk~ 695 (1020)
-|+.+|++.-.
T Consensus 826 vLD~aVIQ~m~ 836 (1373)
T KOG0384|consen 826 VLDHAVIQRMD 836 (1373)
T ss_pred hhHHHHHHhhc
Confidence 57777777654
No 157
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.23 E-value=6.3e-06 Score=87.26 Aligned_cols=125 Identities=24% Similarity=0.294 Sum_probs=83.2
Q ss_pred CeEEEEecCCCchHHHHHHHHHHhcccCCC--EEEEEcccHHHHHHHHHHHHHHhccccCCEEEEEEeeeecCCCCccEE
Q 001722 339 QVVVVVGETGSGKTTQLTQYLLEDGYTTNG--IVGCTQPRRVAAMSVAKRVSEEMDTELGDKVGYAIRFEDVTGPSTLIK 416 (1020)
Q Consensus 339 q~vII~gpTGSGKTtqi~q~Lle~~~~~~~--~Il~tqPrR~lA~qva~rva~e~~~~lG~~VGy~ir~e~~~s~~t~I~ 416 (1020)
++++++||||+||||.+.......... +. .++++-..|+.|.++-+.+++.++.++- .....
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~-~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~----------~~~~~----- 65 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLK-GKKVALISADTYRIGAVEQLKTYAEILGVPFY----------VARTE----- 65 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHT-T--EEEEEESTSSTHHHHHHHHHHHHHTEEEE----------ESSTT-----
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhc-cccceeecCCCCCccHHHHHHHHHHHhccccc----------hhhcc-----
Confidence 478999999999999988776665444 33 3556778999999999999998875421 01100
Q ss_pred EEchHHHHHHHhcCCCCCCccEEEEeCCCcCCCCccHHHHHHHHHHhh-cCCceEEEEeccCCHHH
Q 001722 417 YMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVAR-RRDFKLIVTSATLNAQK 481 (1020)
Q Consensus 417 ~~T~g~LLr~ll~d~~L~~~s~IIIDEaHERs~~tD~ll~lLk~il~~-r~~lklIlmSATld~~~ 481 (1020)
..+..+++..+......++++|+||-+. |+.....++.-++.++.. .+.-.+++||||...+.
T Consensus 66 -~~~~~~~~~~l~~~~~~~~D~vlIDT~G-r~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~ 129 (196)
T PF00448_consen 66 -SDPAEIAREALEKFRKKGYDLVLIDTAG-RSPRDEELLEELKKLLEALNPDEVHLVLSATMGQED 129 (196)
T ss_dssp -SCHHHHHHHHHHHHHHTTSSEEEEEE-S-SSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHH
T ss_pred -hhhHHHHHHHHHHHhhcCCCEEEEecCC-cchhhHHHHHHHHHHhhhcCCccceEEEecccChHH
Confidence 0123333333322223568999999998 676666666666666554 46678899999995433
No 158
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=98.21 E-value=2.1e-05 Score=97.01 Aligned_cols=122 Identities=21% Similarity=0.132 Sum_probs=80.8
Q ss_pred HcCCCcHHHHHHHHHHHHhCCeEEEEecCCCchHHHHHHHHHHhcccCCCEEEEEcccHHHHHHHHHHHHHHhc---ccc
Q 001722 319 RQYLPIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMD---TEL 395 (1020)
Q Consensus 319 R~~LPi~~~q~eil~~i~~~q~vII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~lA~qva~rva~e~~---~~l 395 (1020)
++.|-.+++--+++-.+.-+.--|.-.-||=|||+.+..+++=..+...+.-++|.-- -+|+|-++.|+ ..+
T Consensus 74 ~Rvlg~~~~dVQliG~i~lh~g~iaEM~TGEGKTL~atlp~ylnaL~gkgVhvVTvNd-----YLA~RDae~m~~l~~~L 148 (822)
T COG0653 74 KRVLGMRHFDVQLLGGIVLHLGDIAEMRTGEGKTLVATLPAYLNALAGKGVHVVTVND-----YLARRDAEWMGPLYEFL 148 (822)
T ss_pred HHhcCCChhhHHHhhhhhhcCCceeeeecCCchHHHHHHHHHHHhcCCCCcEEeeehH-----HhhhhCHHHHHHHHHHc
Confidence 4566677777888888888888899999999999998777776666656656666532 23344444444 457
Q ss_pred CCEEEEEEeeeecC----CCCccEEEEchHHHHH-----HHh---cCCCCCCccEEEEeCCC
Q 001722 396 GDKVGYAIRFEDVT----GPSTLIKYMTDGVLLR-----ETL---KDSDLDKYRVIVMDEAH 445 (1020)
Q Consensus 396 G~~VGy~ir~e~~~----s~~t~I~~~T~g~LLr-----~ll---~d~~L~~~s~IIIDEaH 445 (1020)
|.+||..+.+-+.. .=.++|.|.|+.-|=- -+. .+..+....+.|+||++
T Consensus 149 GlsvG~~~~~m~~~ek~~aY~~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvD 210 (822)
T COG0653 149 GLSVGVILAGMSPEEKRAAYACDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVD 210 (822)
T ss_pred CCceeeccCCCChHHHHHHHhcCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchh
Confidence 88888766654322 2267899999864411 111 12235567788888877
No 159
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=98.18 E-value=2.1e-05 Score=98.41 Aligned_cols=162 Identities=23% Similarity=0.291 Sum_probs=104.2
Q ss_pred ceEEEEeccC--CHHHHHHHhCCCCeEeecCccccee------eeecCCCchhHHHHHHHHHHHHhhcCCCCCEEEEcCC
Q 001722 468 FKLIVTSATL--NAQKFSDFFGSVPIFHIPGRTFPVN------TLYSKTPCEDYVEAAVKQAMTIHITSPPGDILIFMTG 539 (1020)
Q Consensus 468 lklIlmSATl--d~~~f~~~f~~~pvi~i~gr~~pV~------i~y~~~~~~dyl~~av~~~l~i~~~~~~g~ILVFl~g 539 (1020)
.++-+||.|. ....|.+.++ .+++.||... |+. ..|. .......+.+..+...|. .+.+|||-+.+
T Consensus 564 ~kLsGMTGTA~tea~Ef~~IY~-L~Vv~IPTnr-P~~R~D~~D~vy~--t~~eK~~Aii~ei~~~~~--~GrPVLVGT~S 637 (1112)
T PRK12901 564 HKLAGMTGTAETEAGEFWDIYK-LDVVVIPTNR-PIARKDKEDLVYK--TKREKYNAVIEEITELSE--AGRPVLVGTTS 637 (1112)
T ss_pred chhcccCCCCHHHHHHHHHHhC-CCEEECCCCC-CcceecCCCeEec--CHHHHHHHHHHHHHHHHH--CCCCEEEEeCc
Confidence 3788999998 3556766664 6788888542 322 2221 122334667777777774 46789999999
Q ss_pred HHHHHHHHHHHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHHHhcCCCeEEEEecchhhccCCCC--------C
Q 001722 540 QDEIEAACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAETSLTVD--------G 611 (1020)
Q Consensus 540 ~~eie~l~~~L~e~l~~l~~~~~~~~~~l~vl~lhs~L~~~eq~~I~~~f~~g~rkVIVATniaEtGItIp--------~ 611 (1020)
.+.-+.+...|... ++..-.|++.....+- .|..... ..-.|.||||+|.+|-||. |
T Consensus 638 Ve~SE~lS~~L~~~-------------gI~H~VLNAK~h~~EA-eIVA~AG-~~GaVTIATNMAGRGTDIkLg~~V~e~G 702 (1112)
T PRK12901 638 VEISELLSRMLKMR-------------KIPHNVLNAKLHQKEA-EIVAEAG-QPGTVTIATNMAGRGTDIKLSPEVKAAG 702 (1112)
T ss_pred HHHHHHHHHHHHHc-------------CCcHHHhhccchhhHH-HHHHhcC-CCCcEEEeccCcCCCcCcccchhhHHcC
Confidence 99999888888652 2221223333223332 3333221 1347889999999999997 3
Q ss_pred eeEEEEcCCccceeccCCCCcccccccccCHHHHHHHhcccCCCC-CCEEEEccChhh
Q 001722 612 IFYVIDTGYGKMKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTG-PGTCYRLYTESA 668 (1020)
Q Consensus 612 V~~VID~G~~K~~~yd~~~g~~~L~~~piS~as~~QRaGRAGR~g-~G~cyrLyt~~~ 668 (1020)
=-+||-+. .+-|.--=.|-.|||||.| ||.+-.+.+-++
T Consensus 703 GL~VIgTe------------------rheSrRID~QLrGRaGRQGDPGsS~f~lSLED 742 (1112)
T PRK12901 703 GLAIIGTE------------------RHESRRVDRQLRGRAGRQGDPGSSQFYVSLED 742 (1112)
T ss_pred CCEEEEcc------------------CCCcHHHHHHHhcccccCCCCCcceEEEEccc
Confidence 34555333 4667777799999999999 798766665443
No 160
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.13 E-value=2.2e-06 Score=83.49 Aligned_cols=119 Identities=18% Similarity=0.297 Sum_probs=66.6
Q ss_pred HhCCeEEEEecCCCchHHHHHHHHHHhccc-----CCCEEEEEcccHHHHHHHHHHHHHHhccccCCEEEEEEeeeecCC
Q 001722 336 RENQVVVVVGETGSGKTTQLTQYLLEDGYT-----TNGIVGCTQPRRVAAMSVAKRVSEEMDTELGDKVGYAIRFEDVTG 410 (1020)
Q Consensus 336 ~~~q~vII~gpTGSGKTtqi~q~Lle~~~~-----~~~~Il~tqPrR~lA~qva~rva~e~~~~lG~~VGy~ir~e~~~s 410 (1020)
++++.++|+|++|+|||+.+-.++.+.... ....+.+..|...-...++..+...++.....
T Consensus 2 ~~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~------------- 68 (131)
T PF13401_consen 2 QSQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKS------------- 68 (131)
T ss_dssp -----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS-------------
T ss_pred CCCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccc-------------
Confidence 356789999999999999988877654321 23345555665555667777777776644322
Q ss_pred CCccEEEEchHHHHHHHhcCCCCCCccEEEEeCCCcCCCCccHHHHHHHHHHhhcCCceEEEEecc
Q 001722 411 PSTLIKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTSAT 476 (1020)
Q Consensus 411 ~~t~I~~~T~g~LLr~ll~d~~L~~~s~IIIDEaHERs~~tD~ll~lLk~il~~r~~lklIlmSAT 476 (1020)
-.+...+...+...-.-....+|||||+|.-. .+-.+..|+.+.. ...+++|++.-+
T Consensus 69 ------~~~~~~l~~~~~~~l~~~~~~~lviDe~~~l~--~~~~l~~l~~l~~-~~~~~vvl~G~~ 125 (131)
T PF13401_consen 69 ------RQTSDELRSLLIDALDRRRVVLLVIDEADHLF--SDEFLEFLRSLLN-ESNIKVVLVGTP 125 (131)
T ss_dssp ------TS-HHHHHHHHHHHHHHCTEEEEEEETTHHHH--THHHHHHHHHHTC-SCBEEEEEEESS
T ss_pred ------cCCHHHHHHHHHHHHHhcCCeEEEEeChHhcC--CHHHHHHHHHHHh-CCCCeEEEEECh
Confidence 11222232222111111122699999999642 3556666766655 667777776543
No 161
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.06 E-value=1.5e-05 Score=84.44 Aligned_cols=122 Identities=25% Similarity=0.241 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHhC--CeEEEEecCCCchHHHHHHHHHHhcccCCCEEEEEcccHHHHHHHHHHHHHHhccccCCEEEEE
Q 001722 325 FSVRDELLQVIREN--QVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELGDKVGYA 402 (1020)
Q Consensus 325 ~~~q~eil~~i~~~--q~vII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~lA~qva~rva~e~~~~lG~~VGy~ 402 (1020)
.+-|.+++..+..+ +.++|.|+.|+||||.+-. +.+.....+.+|+++.|+..++..+.+.. + ..
T Consensus 3 ~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~l~~-~~~~~~~~g~~v~~~apT~~Aa~~L~~~~----~----~~---- 69 (196)
T PF13604_consen 3 NEEQREAVRAILTSGDRVSVLQGPAGTGKTTLLKA-LAEALEAAGKRVIGLAPTNKAAKELREKT----G----IE---- 69 (196)
T ss_dssp -HHHHHHHHHHHHCTCSEEEEEESTTSTHHHHHHH-HHHHHHHTT--EEEEESSHHHHHHHHHHH----T----S-----
T ss_pred CHHHHHHHHHHHhcCCeEEEEEECCCCCHHHHHHH-HHHHHHhCCCeEEEECCcHHHHHHHHHhh----C----cc----
Confidence 45688888888644 4888999999999997644 44444444568999999999988876663 1 11
Q ss_pred EeeeecCCCCccEEEEchHHHHHHHhc-----CCCCCCccEEEEeCCCcCCCCccHHHHHHHHHHhhcCCceEEEEeccC
Q 001722 403 IRFEDVTGPSTLIKYMTDGVLLRETLK-----DSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTSATL 477 (1020)
Q Consensus 403 ir~e~~~s~~t~I~~~T~g~LLr~ll~-----d~~L~~~s~IIIDEaHERs~~tD~ll~lLk~il~~r~~lklIlmSATl 477 (1020)
..|-..++..... .+.+...++||||||- .+....+..+++.+-. .+.|+|++-=+-
T Consensus 70 --------------a~Ti~~~l~~~~~~~~~~~~~~~~~~vliVDEas--mv~~~~~~~ll~~~~~--~~~klilvGD~~ 131 (196)
T PF13604_consen 70 --------------AQTIHSFLYRIPNGDDEGRPELPKKDVLIVDEAS--MVDSRQLARLLRLAKK--SGAKLILVGDPN 131 (196)
T ss_dssp --------------EEEHHHHTTEECCEECCSSCC-TSTSEEEESSGG--G-BHHHHHHHHHHS-T---T-EEEEEE-TT
T ss_pred --------------hhhHHHHHhcCCcccccccccCCcccEEEEeccc--ccCHHHHHHHHHHHHh--cCCEEEEECCcc
Confidence 1111111111100 0115677899999998 4555555555554322 357888766544
No 162
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=98.05 E-value=9.4e-05 Score=85.02 Aligned_cols=128 Identities=24% Similarity=0.246 Sum_probs=90.8
Q ss_pred hCCeEEEEecCCCchHHHHHHHHHHhc-ccCCCEE--EEEcccHHHHHHHHHHHHHHhccccCCEEEEEEeeeecCCCCc
Q 001722 337 ENQVVVVVGETGSGKTTQLTQYLLEDG-YTTNGIV--GCTQPRRVAAMSVAKRVSEEMDTELGDKVGYAIRFEDVTGPST 413 (1020)
Q Consensus 337 ~~q~vII~gpTGSGKTtqi~q~Lle~~-~~~~~~I--l~tqPrR~lA~qva~rva~e~~~~lG~~VGy~ir~e~~~s~~t 413 (1020)
.++++.++||||.||||.+........ .....+| +-|=-.|+.|..+-+..++.|++++
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~------------------ 263 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPL------------------ 263 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCce------------------
Confidence 389999999999999999877655554 2223333 3345779999999999999988653
Q ss_pred cEEEEchHHHHHHHhcCCCCCCccEEEEeCCCcCCCCccHHHHHHHHHHhhcCC-ceEEEEeccCCHHHHHHHhC
Q 001722 414 LIKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRD-FKLIVTSATLNAQKFSDFFG 487 (1020)
Q Consensus 414 ~I~~~T~g~LLr~ll~d~~L~~~s~IIIDEaHERs~~tD~ll~lLk~il~~r~~-lklIlmSATld~~~f~~~f~ 487 (1020)
.++-++.-|...+. .|.++++|.||=+- |+..-...+.-|+.+...-.+ -..+++|||...+.+.+.+.
T Consensus 264 -~vv~~~~el~~ai~---~l~~~d~ILVDTaG-rs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~dlkei~~ 333 (407)
T COG1419 264 -EVVYSPKELAEAIE---ALRDCDVILVDTAG-RSQYDKEKIEELKELIDVSHSIEVYLVLSATTKYEDLKEIIK 333 (407)
T ss_pred -EEecCHHHHHHHHH---HhhcCCEEEEeCCC-CCccCHHHHHHHHHHHhccccceEEEEEecCcchHHHHHHHH
Confidence 12233444444432 37888999999999 788777788888887765434 45688999996665555443
No 163
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.97 E-value=5.9e-05 Score=87.62 Aligned_cols=127 Identities=19% Similarity=0.221 Sum_probs=79.3
Q ss_pred CCeEEEEecCCCchHHHHHHHHHHhccc---CCCEE--EEEcccHHHHHHHHHHHHHHhccccCCEEEEEEeeeecCCCC
Q 001722 338 NQVVVVVGETGSGKTTQLTQYLLEDGYT---TNGIV--GCTQPRRVAAMSVAKRVSEEMDTELGDKVGYAIRFEDVTGPS 412 (1020)
Q Consensus 338 ~q~vII~gpTGSGKTtqi~q~Lle~~~~---~~~~I--l~tqPrR~lA~qva~rva~e~~~~lG~~VGy~ir~e~~~s~~ 412 (1020)
..+++++||||+||||.+.......... .+.+| +.+=+.|..|...-+.+++.++.++ .+.
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv--~~~------------ 239 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPV--KAI------------ 239 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcce--Eee------------
Confidence 4689999999999999987665433221 23344 3445778888888777766655432 010
Q ss_pred ccEEEEchHHHHHHHhcCCCCCCccEEEEeCCCcCCCCccHHHHHHHHHHhh-cCC-ceEEEEeccCCHHHHHHHhC
Q 001722 413 TLIKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVAR-RRD-FKLIVTSATLNAQKFSDFFG 487 (1020)
Q Consensus 413 t~I~~~T~g~LLr~ll~d~~L~~~s~IIIDEaHERs~~tD~ll~lLk~il~~-r~~-lklIlmSATld~~~f~~~f~ 487 (1020)
.+..-+...+. .+.++++||||++. |+......+.-++.++.. .++ -.++++|||.....+.+.|.
T Consensus 240 -----~~~~~l~~~L~---~~~~~DlVLIDTaG-r~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~~~~ 307 (388)
T PRK12723 240 -----ESFKDLKEEIT---QSKDFDLVLVDTIG-KSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVKEIFH 307 (388)
T ss_pred -----CcHHHHHHHHH---HhCCCCEEEEcCCC-CCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHH
Confidence 12223333222 14689999999998 555433345555555553 233 47899999997666666554
No 164
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=97.92 E-value=0.00062 Score=87.78 Aligned_cols=138 Identities=23% Similarity=0.186 Sum_probs=87.0
Q ss_pred CeEEEEecCCCchHHHHH---HHHHHhcccCCCEEEEEcccHHHHHHHHHHHHHHhccccCCEEEEEEeeee-------c
Q 001722 339 QVVVVVGETGSGKTTQLT---QYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELGDKVGYAIRFED-------V 408 (1020)
Q Consensus 339 q~vII~gpTGSGKTtqi~---q~Lle~~~~~~~~Il~tqPrR~lA~qva~rva~e~~~~lG~~VGy~ir~e~-------~ 408 (1020)
+.-+|.=-||||||..+. ..+++. .....|++++-|+.|-.|+...++...... .. +. +.++ .
T Consensus 274 ~~G~IWHtqGSGKTlTm~~~A~~l~~~--~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~-~~-~~---~~~s~~~Lk~~l 346 (962)
T COG0610 274 KGGYIWHTQGSGKTLTMFKLARLLLEL--PKNPKVLFVVDRKDLDDQTSDEFQSFGKVA-FN-DP---KAESTSELKELL 346 (962)
T ss_pred CceEEEeecCCchHHHHHHHHHHHHhc--cCCCeEEEEechHHHHHHHHHHHHHHHHhh-hh-cc---cccCHHHHHHHH
Confidence 358999999999998753 334443 335689999999999999998885532211 11 00 1111 1
Q ss_pred CCCCccEEEEchHHHHHHHhcCC--CCC-CccEEEEeCCCcCCCCccHHHHHHHHHHhhcCCceEEEEeccC----CHHH
Q 001722 409 TGPSTLIKYMTDGVLLRETLKDS--DLD-KYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTSATL----NAQK 481 (1020)
Q Consensus 409 ~s~~t~I~~~T~g~LLr~ll~d~--~L~-~~s~IIIDEaHERs~~tD~ll~lLk~il~~r~~lklIlmSATl----d~~~ 481 (1020)
......|+++|-.-|-.....+. .+. +==+||+|||| |+...... ..++.. .++...+++|.|+ |...
T Consensus 347 ~~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaH-RSQ~G~~~-~~~~~~---~~~a~~~gFTGTPi~~~d~~t 421 (962)
T COG0610 347 EDGKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAH-RSQYGELA-KLLKKA---LKKAIFIGFTGTPIFKEDKDT 421 (962)
T ss_pred hcCCCcEEEEEecccchhhhcccccccCCCcEEEEEechh-hccccHHH-HHHHHH---hccceEEEeeCCccccccccc
Confidence 11245899999887766654431 112 22379999999 88777643 333443 3457899999999 3333
Q ss_pred HHHHhCC
Q 001722 482 FSDFFGS 488 (1020)
Q Consensus 482 f~~~f~~ 488 (1020)
...-||.
T Consensus 422 t~~~fg~ 428 (962)
T COG0610 422 TKDVFGD 428 (962)
T ss_pred hhhhhcc
Confidence 3445554
No 165
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=97.91 E-value=0.00068 Score=85.25 Aligned_cols=116 Identities=23% Similarity=0.311 Sum_probs=83.6
Q ss_pred CCEEEEcCCHHHHHHHHHHHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHHHhcCC-CeEEE-EecchhhccCC
Q 001722 531 GDILIFMTGQDEIEAACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEG-TRKCI-VATNIAETSLT 608 (1020)
Q Consensus 531 g~ILVFl~g~~eie~l~~~L~e~l~~l~~~~~~~~~~l~vl~lhs~L~~~eq~~I~~~f~~g-~rkVI-VATniaEtGIt 608 (1020)
..|||||.=+..++-+..-|.+. ..+.+..+-+.|+.|+..|.+|.+.|.++ .+.|+ +.|.+..-|+|
T Consensus 1341 HRiLIFcQlK~mlDlVekDL~k~----------~mpsVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLN 1410 (1549)
T KOG0392|consen 1341 HRILIFCQLKSMLDLVEKDLFKK----------YMPSVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLN 1410 (1549)
T ss_pred ceeEEeeeHHHHHHHHHHHHhhh----------hcCceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccc
Confidence 47899998877777766655432 34667778899999999999999999988 67776 57889999999
Q ss_pred CCCeeEEEEcCCccceeccCCCCcccccccccCHHHHHHHhcccCCCCCCEEEEccChhhHhh
Q 001722 609 VDGIFYVIDTGYGKMKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTGPGTCYRLYTESAYLN 671 (1020)
Q Consensus 609 Ip~V~~VID~G~~K~~~yd~~~g~~~L~~~piS~as~~QRaGRAGR~g~G~cyrLyt~~~~~~ 671 (1020)
+-|.+.||-.- --|| |..--+|.-|+-|-|-..--.+|||.|+...++
T Consensus 1411 LTGADTVVFvE----HDWN-----------PMrDLQAMDRAHRIGQKrvVNVyRlItrGTLEE 1458 (1549)
T KOG0392|consen 1411 LTGADTVVFVE----HDWN-----------PMRDLQAMDRAHRIGQKRVVNVYRLITRGTLEE 1458 (1549)
T ss_pred cCCCceEEEEe----cCCC-----------chhhHHHHHHHHhhcCceeeeeeeehhcccHHH
Confidence 99999998311 0122 333334444444444444567899999887643
No 166
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.90 E-value=0.00068 Score=80.05 Aligned_cols=129 Identities=26% Similarity=0.268 Sum_probs=77.2
Q ss_pred hCCeEEEEecCCCchHHHHHHHHHHhc-ccCCCEEEE--EcccHHHHHHHHHHHHHHhccccCCEEEEEEeeeecCCCCc
Q 001722 337 ENQVVVVVGETGSGKTTQLTQYLLEDG-YTTNGIVGC--TQPRRVAAMSVAKRVSEEMDTELGDKVGYAIRFEDVTGPST 413 (1020)
Q Consensus 337 ~~q~vII~gpTGSGKTtqi~q~Lle~~-~~~~~~Il~--tqPrR~lA~qva~rva~e~~~~lG~~VGy~ir~e~~~s~~t 413 (1020)
.+.+++++||||+||||.+..+..... ...+.+|++ +-|.|..+.......++.++..+ .+
T Consensus 220 ~~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~--~~-------------- 283 (424)
T PRK05703 220 QGGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPV--EV-------------- 283 (424)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCce--Ec--------------
Confidence 467899999999999999877655543 222334443 35778877777666666554321 00
Q ss_pred cEEEEchHHHHHHHhcCCCCCCccEEEEeCCCcCCCCccHHHHHHHHHHh-h-cCCceEEEEeccCCHHHH---HHHhCC
Q 001722 414 LIKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVA-R-RRDFKLIVTSATLNAQKF---SDFFGS 488 (1020)
Q Consensus 414 ~I~~~T~g~LLr~ll~d~~L~~~s~IIIDEaHERs~~tD~ll~lLk~il~-~-r~~lklIlmSATld~~~f---~~~f~~ 488 (1020)
..++.-+...+. .+.++++||||.+. ++....-.+..|..++. . .+.-.++++|||.....+ ...|..
T Consensus 284 ---~~~~~~l~~~l~---~~~~~DlVlIDt~G-~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~~~~f~~ 356 (424)
T PRK05703 284 ---VYDPKELAKALE---QLRDCDVILIDTAG-RSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYEDLKDIYKHFSR 356 (424)
T ss_pred ---cCCHHhHHHHHH---HhCCCCEEEEeCCC-CCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHHHHHHHhCC
Confidence 112223333332 14578999999997 44333334445555554 2 344568889999965444 445543
No 167
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=97.88 E-value=4.5e-05 Score=84.70 Aligned_cols=131 Identities=18% Similarity=0.091 Sum_probs=69.0
Q ss_pred hCCeEEEEecCCCchHHHHHHHHHHh--cccCC--CEEEEEcccHHHHHHHHHHHHHHhccccCCEEEEEEeee------
Q 001722 337 ENQVVVVVGETGSGKTTQLTQYLLED--GYTTN--GIVGCTQPRRVAAMSVAKRVSEEMDTELGDKVGYAIRFE------ 406 (1020)
Q Consensus 337 ~~q~vII~gpTGSGKTtqi~q~Lle~--~~~~~--~~Il~tqPrR~lA~qva~rva~e~~~~lG~~VGy~ir~e------ 406 (1020)
.....|++-++|+|||.++..++... ..... ..++++.|. .+..+-...+.+..... ...+-......
T Consensus 24 ~~~g~lL~de~GlGKT~~~i~~~~~l~~~~~~~~~~~~LIv~P~-~l~~~W~~E~~~~~~~~-~~~v~~~~~~~~~~~~~ 101 (299)
T PF00176_consen 24 PPRGGLLADEMGLGKTITAIALISYLKNEFPQRGEKKTLIVVPS-SLLSQWKEEIEKWFDPD-SLRVIIYDGDSERRRLS 101 (299)
T ss_dssp TT-EEEE---TTSSHHHHHHHHHHHHHHCCTTSS-S-EEEEE-T-TTHHHHHHHHHHHSGT--TS-EEEESSSCHHHHTT
T ss_pred CCCCEEEEECCCCCchhhhhhhhhhhhhccccccccceeEeecc-chhhhhhhhhccccccc-ccccccccccccccccc
Confidence 45678999999999999877665521 11111 258888898 55556666665544221 11221111111
Q ss_pred ecCCCCccEEEEchHHHH-----HH--HhcCCCCCCccEEEEeCCCcC-CCCccHHHHHHHHHHhhcCCceEEEEeccC
Q 001722 407 DVTGPSTLIKYMTDGVLL-----RE--TLKDSDLDKYRVIVMDEAHER-SLSTDVLFGILKKVVARRRDFKLIVTSATL 477 (1020)
Q Consensus 407 ~~~s~~t~I~~~T~g~LL-----r~--ll~d~~L~~~s~IIIDEaHER-s~~tD~ll~lLk~il~~r~~lklIlmSATl 477 (1020)
........++++|...+. .. .+. --++++|||||+|.- +..+... ..+.. .. ....+++|||+
T Consensus 102 ~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~---~~~~~~vIvDEaH~~k~~~s~~~-~~l~~---l~-~~~~~lLSgTP 172 (299)
T PF00176_consen 102 KNQLPKYDVVITTYETLRKARKKKDKEDLK---QIKWDRVIVDEAHRLKNKDSKRY-KALRK---LR-ARYRWLLSGTP 172 (299)
T ss_dssp SSSCCCSSEEEEEHHHHH--TSTHTTHHHH---TSEEEEEEETTGGGGTTTTSHHH-HHHHC---CC-ECEEEEE-SS-
T ss_pred ccccccceeeeccccccccccccccccccc---cccceeEEEeccccccccccccc-ccccc---cc-cceEEeecccc
Confidence 122345679999999888 11 111 134899999999963 3333322 22222 12 45778899998
No 168
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.87 E-value=0.00014 Score=83.70 Aligned_cols=130 Identities=18% Similarity=0.246 Sum_probs=77.1
Q ss_pred CCeEEEEecCCCchHHHHHHHHHHhcccCCCEEEE--EcccHHHHHHHHHHHHHHhccccCCEEEEEEeeeecCCCCccE
Q 001722 338 NQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGC--TQPRRVAAMSVAKRVSEEMDTELGDKVGYAIRFEDVTGPSTLI 415 (1020)
Q Consensus 338 ~q~vII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~--tqPrR~lA~qva~rva~e~~~~lG~~VGy~ir~e~~~s~~t~I 415 (1020)
.+++.++||||+||||.+........ ..+.+|++ +-|.|+.+.+.-+..++.++..+ +
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~-~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv-------------------~ 300 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFH-GKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEV-------------------I 300 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHH-HcCCcEEEEecCCcchHHHHHHHHHhhhcCCcE-------------------E
Confidence 36889999999999999876654432 22334433 34778777766655555443221 1
Q ss_pred EEEchHHHHHHHhcCCCCCCccEEEEeCCCcCCCCccHHHHHHHHHHh-hcCCceEEEEeccCCH---HHHHHHhCC
Q 001722 416 KYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVA-RRRDFKLIVTSATLNA---QKFSDFFGS 488 (1020)
Q Consensus 416 ~~~T~g~LLr~ll~d~~L~~~s~IIIDEaHERs~~tD~ll~lLk~il~-~r~~lklIlmSATld~---~~f~~~f~~ 488 (1020)
...++..+.+.+..-....++++||||-+- |+....-++.-+..++. ..|+-.++++|||... ..+.+.|..
T Consensus 301 v~~d~~~L~~aL~~lk~~~~~DvVLIDTaG-Rs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~d~~~i~~~F~~ 376 (436)
T PRK11889 301 AVRDEAAMTRALTYFKEEARVDYILIDTAG-KNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITNFKD 376 (436)
T ss_pred ecCCHHHHHHHHHHHHhccCCCEEEEeCcc-ccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChHHHHHHHHHhcC
Confidence 112444454433221112368999999998 55555555555555554 4566667889999843 445555553
No 169
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.83 E-value=0.00012 Score=84.55 Aligned_cols=124 Identities=15% Similarity=0.154 Sum_probs=77.8
Q ss_pred HHhCCeEEEEecCCCchHHHHHHHHHHhcccCC-CEEEEE--cccHHHHHHHHHHHHHHhccccCCEEEEEEeeeecCCC
Q 001722 335 IRENQVVVVVGETGSGKTTQLTQYLLEDGYTTN-GIVGCT--QPRRVAAMSVAKRVSEEMDTELGDKVGYAIRFEDVTGP 411 (1020)
Q Consensus 335 i~~~q~vII~gpTGSGKTtqi~q~Lle~~~~~~-~~Il~t--qPrR~lA~qva~rva~e~~~~lG~~VGy~ir~e~~~s~ 411 (1020)
+..+.+++++||||+||||.+...........+ .+|.++ -+.|+.+.+..+.+++.++..+.
T Consensus 134 ~~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~--------------- 198 (374)
T PRK14722 134 MERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVH--------------- 198 (374)
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceE---------------
Confidence 456789999999999999998776655433322 244332 35577777777777766553210
Q ss_pred CccEEEEchHHHHHHHhcCCCCCCccEEEEeCCCcCCCCccHHHHHHHHHHhh-cCCceEEEEeccCCHHH
Q 001722 412 STLIKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVAR-RRDFKLIVTSATLNAQK 481 (1020)
Q Consensus 412 ~t~I~~~T~g~LLr~ll~d~~L~~~s~IIIDEaHERs~~tD~ll~lLk~il~~-r~~lklIlmSATld~~~ 481 (1020)
.+.+.+-+...+. .+.++++|+||.+- ++...+.+...+..+... .+.-.++++|||...+.
T Consensus 199 ----~~~~~~~l~~~l~---~l~~~DlVLIDTaG-~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~ 261 (374)
T PRK14722 199 ----AVKDGGDLQLALA---ELRNKHMVLIDTIG-MSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDT 261 (374)
T ss_pred ----ecCCcccHHHHHH---HhcCCCEEEEcCCC-CCcccHHHHHHHHHHhccCCCCeEEEEecCccChHH
Confidence 1122222322221 25678999999998 555555666666665432 34457899999995443
No 170
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=97.83 E-value=1.2e-05 Score=99.14 Aligned_cols=227 Identities=18% Similarity=0.204 Sum_probs=141.0
Q ss_pred cCCCcHHHHHHHHHHHHhC----------------CeEEEEecCCCchHHHHHHHHHHhccc-CCCEEEEEcccHHHHHH
Q 001722 320 QYLPIFSVRDELLQVIREN----------------QVVVVVGETGSGKTTQLTQYLLEDGYT-TNGIVGCTQPRRVAAMS 382 (1020)
Q Consensus 320 ~~LPi~~~q~eil~~i~~~----------------q~vII~gpTGSGKTtqi~q~Lle~~~~-~~~~Il~tqPrR~lA~q 382 (1020)
+.||+...+...++.+... .++++-+|||+|||..+...+...... .+++++++.|-+++...
T Consensus 909 ~plp~~~L~~~~~e~~~~~fn~~q~~if~~~y~td~~~~~g~ptgsgkt~~ae~a~~~~~~~~p~~kvvyIap~kalvke 988 (1230)
T KOG0952|consen 909 RPLPSSALKNVVFEALYKYFNPIQTQIFHCLYHTDLNFLLGAPTGSGKTVVAELAIFRALSYYPGSKVVYIAPDKALVKE 988 (1230)
T ss_pred CCCcchhhccccHHHhhcccCCccceEEEEEeecchhhhhcCCccCcchhHHHHHHHHHhccCCCccEEEEcCCchhhcc
Confidence 5677777777777776542 456788999999999987766554333 34689999999999999
Q ss_pred HHHHHHHHhccccCCEEEEEEeeee----cCCCCccEEEEchHHH---HHHHhcCCCCCCccEEEEeCCCcCCCC----c
Q 001722 383 VAKRVSEEMDTELGDKVGYAIRFED----VTGPSTLIKYMTDGVL---LRETLKDSDLDKYRVIVMDEAHERSLS----T 451 (1020)
Q Consensus 383 va~rva~e~~~~lG~~VGy~ir~e~----~~s~~t~I~~~T~g~L---Lr~ll~d~~L~~~s~IIIDEaHERs~~----t 451 (1020)
.+......+... |..++- ...+. ..-.++.|++.|++.. .|.+.....+.+++.+|+||.|.-+-+ .
T Consensus 989 r~~Dw~~r~~~~-g~k~ie-~tgd~~pd~~~v~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg~~rgPVl 1066 (1230)
T KOG0952|consen 989 RSDDWSKRDELP-GIKVIE-LTGDVTPDVKAVREADIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLGEDRGPVL 1066 (1230)
T ss_pred cccchhhhcccC-CceeEe-ccCccCCChhheecCceEEcccccccCccccccchhhhccccceeecccccccCCCcceE
Confidence 888887665544 444321 11111 1123577888998754 334445566889999999999953333 2
Q ss_pred cHHHHHHHH-HHhhcCCceEEEEeccC-CHHHHHHHhCCCCeEee--cCcccceeeeecCCCchhHHHH------HHHHH
Q 001722 452 DVLFGILKK-VVARRRDFKLIVTSATL-NAQKFSDFFGSVPIFHI--PGRTFPVNTLYSKTPCEDYVEA------AVKQA 521 (1020)
Q Consensus 452 D~ll~lLk~-il~~r~~lklIlmSATl-d~~~f~~~f~~~pvi~i--~gr~~pV~i~y~~~~~~dyl~~------av~~~ 521 (1020)
.++...... -....+.++++++|--+ |+..+++|++-.+.+.. .-+..|.++++...|..-|... ..-++
T Consensus 1067 e~ivsr~n~~s~~t~~~vr~~glsta~~na~dla~wl~~~~~~nf~~svrpvp~~~~i~gfp~~~~cprm~smnkpa~qa 1146 (1230)
T KOG0952|consen 1067 EVIVSRMNYISSQTEEPVRYLGLSTALANANDLADWLNIKDMYNFRPSVRPVPLEVHIDGFPGQHYCPRMMSMNKPAFQA 1146 (1230)
T ss_pred EEEeeccccCccccCcchhhhhHhhhhhccHHHHHHhCCCCcCCCCcccccCCceEeecCCCchhcchhhhhcccHHHHH
Confidence 222211111 11123456777776555 89999999986655333 2344556666665554333221 11223
Q ss_pred HHHhhcCCCCCEEEEcCCHHHHHHHHHHH
Q 001722 522 MTIHITSPPGDILIFMTGQDEIEAACFAL 550 (1020)
Q Consensus 522 l~i~~~~~~g~ILVFl~g~~eie~l~~~L 550 (1020)
+.. ..|..++|||+.++....-.+..|
T Consensus 1147 ik~--~sp~~p~lifv~srrqtrlta~~l 1173 (1230)
T KOG0952|consen 1147 IKT--HSPIKPVLIFVSSRRQTRLTALDL 1173 (1230)
T ss_pred Hhc--CCCCCceEEEeecccccccchHhH
Confidence 333 346688999998887665554433
No 171
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.82 E-value=8.5e-05 Score=79.00 Aligned_cols=55 Identities=25% Similarity=0.222 Sum_probs=39.6
Q ss_pred CcHHHHHHHHHHHHhCCeEEEEecCCCchHHHHHHHHHHhccc-CCCEEEEEcccH
Q 001722 323 PIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYT-TNGIVGCTQPRR 377 (1020)
Q Consensus 323 Pi~~~q~eil~~i~~~q~vII~gpTGSGKTtqi~q~Lle~~~~-~~~~Il~tqPrR 377 (1020)
|....|..+++++.+++.+++.||.|||||+.+....++.... ...+|+++-|.-
T Consensus 4 p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v 59 (205)
T PF02562_consen 4 PKNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPV 59 (205)
T ss_dssp --SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S-
T ss_pred CCCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCC
Confidence 6778899999999999999999999999999887777666443 235899988854
No 172
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=97.75 E-value=0.0046 Score=78.11 Aligned_cols=124 Identities=23% Similarity=0.177 Sum_probs=80.1
Q ss_pred cCCCcHHHHHHHHHHHHh-CCeEEEEecCCCchHHHHHHHHHHhcccCCCEEEEEcccHHHHHHHHHHHHHHhccccCCE
Q 001722 320 QYLPIFSVRDELLQVIRE-NQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELGDK 398 (1020)
Q Consensus 320 ~~LPi~~~q~eil~~i~~-~q~vII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~lA~qva~rva~e~~~~lG~~ 398 (1020)
....+..-|.+++..+.. +++++|+|++|+||||.+-. +.+.....+..|+++.|+-.+|..+.. ..|..
T Consensus 349 ~~~~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtll~~-i~~~~~~~g~~V~~~ApTg~Aa~~L~~----~~g~~---- 419 (744)
T TIGR02768 349 QHYRLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTMLKA-AREAWEAAGYRVIGAALSGKAAEGLQA----ESGIE---- 419 (744)
T ss_pred ccCCCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHHHHH-HHHHHHhCCCeEEEEeCcHHHHHHHHh----ccCCc----
Confidence 346678999999998877 58999999999999998654 333333335678899999877755432 11110
Q ss_pred EEEEEeeeecCCCCccEEEEchHHHHHHHh-cCCCCCCccEEEEeCCCcCCCCccHHHHHHHHHHhhcCCceEEEEe
Q 001722 399 VGYAIRFEDVTGPSTLIKYMTDGVLLRETL-KDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTS 474 (1020)
Q Consensus 399 VGy~ir~e~~~s~~t~I~~~T~g~LLr~ll-~d~~L~~~s~IIIDEaHERs~~tD~ll~lLk~il~~r~~lklIlmS 474 (1020)
-.|-..++..+. ....+...++||||||- .+..+.+..+++.... ...++|++-
T Consensus 420 ------------------a~Ti~~~~~~~~~~~~~~~~~~llIvDEas--Mv~~~~~~~Ll~~~~~--~~~kliLVG 474 (744)
T TIGR02768 420 ------------------SRTLASLEYAWANGRDLLSDKDVLVIDEAG--MVGSRQMARVLKEAEE--AGAKVVLVG 474 (744)
T ss_pred ------------------eeeHHHHHhhhccCcccCCCCcEEEEECcc--cCCHHHHHHHHHHHHh--cCCEEEEEC
Confidence 012222221111 12346788999999998 5666666666655432 467777766
No 173
>PF13245 AAA_19: Part of AAA domain
Probab=97.73 E-value=8.2e-05 Score=66.73 Aligned_cols=54 Identities=30% Similarity=0.334 Sum_probs=42.9
Q ss_pred HHHhCCeEEEEecCCCchHHHHHHHHHHhccc---CCCEEEEEcccHHHHHHHHHHH
Q 001722 334 VIRENQVVVVVGETGSGKTTQLTQYLLEDGYT---TNGIVGCTQPRRVAAMSVAKRV 387 (1020)
Q Consensus 334 ~i~~~q~vII~gpTGSGKTtqi~q~Lle~~~~---~~~~Il~tqPrR~lA~qva~rv 387 (1020)
++..+..++|.||+|||||+.+...+.+.... .+.+|+|+.|++.++..+.+++
T Consensus 6 al~~~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 6 ALAGSPLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred HHhhCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHHHHHHHHH
Confidence 55557788889999999998877666554321 1568999999999999999888
No 174
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=97.69 E-value=0.00025 Score=86.75 Aligned_cols=135 Identities=19% Similarity=0.226 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHhCCeEEEEecCCCchHHHHHHHHHHh--cccC--CCEEEEEcccHHHHHHHHHHHHHHhccccCCEEEE
Q 001722 326 SVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLED--GYTT--NGIVGCTQPRRVAAMSVAKRVSEEMDTELGDKVGY 401 (1020)
Q Consensus 326 ~~q~eil~~i~~~q~vII~gpTGSGKTtqi~q~Lle~--~~~~--~~~Il~tqPrR~lA~qva~rva~e~~~~lG~~VGy 401 (1020)
..|..++.....+++++|+|++|+||||.+...+... .... ..+|+++.||--+|..+.+.+..... .++..
T Consensus 148 ~~Qk~A~~~al~~~~~vitGgpGTGKTt~v~~ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~~~~~~~-~l~~~--- 223 (586)
T TIGR01447 148 NWQKVAVALALKSNFSLITGGPGTGKTTTVARLLLALVKQSPKQGKLRIALAAPTGKAAARLAESLRKAVK-NLAAA--- 223 (586)
T ss_pred HHHHHHHHHHhhCCeEEEEcCCCCCHHHHHHHHHHHHHHhccccCCCcEEEECCcHHHHHHHHHHHHhhhc-ccccc---
Confidence 5788888888999999999999999999876544321 1111 24799999999998887776644321 11100
Q ss_pred EEeeeecCCCCccEEEEchHHHHHHHh-------cCCCCCCccEEEEeCCCcCCCCccHHHHHHHHHHhhcCCceEEEEe
Q 001722 402 AIRFEDVTGPSTLIKYMTDGVLLRETL-------KDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTS 474 (1020)
Q Consensus 402 ~ir~e~~~s~~t~I~~~T~g~LLr~ll-------~d~~L~~~s~IIIDEaHERs~~tD~ll~lLk~il~~r~~lklIlmS 474 (1020)
........+...|-..||.... .......+++||||||- +++...+..+++.+ .+..|+|++-
T Consensus 224 -----~~~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaS--Mvd~~l~~~ll~al---~~~~rlIlvG 293 (586)
T TIGR01447 224 -----EALIAALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEAS--MVDLPLMAKLLKAL---PPNTKLILLG 293 (586)
T ss_pred -----hhhhhccccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccc--cCCHHHHHHHHHhc---CCCCEEEEEC
Confidence 0000000111233222322111 01123368999999997 56666555555533 4567877754
No 175
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=97.69 E-value=0.0034 Score=73.80 Aligned_cols=230 Identities=15% Similarity=0.101 Sum_probs=140.6
Q ss_pred CccEEEEchHHHHHHHhc------C-CCCCCccEEEEeCCCc-CCCCccHHHHHHHHHHhhcC-----------------
Q 001722 412 STLIKYMTDGVLLRETLK------D-SDLDKYRVIVMDEAHE-RSLSTDVLFGILKKVVARRR----------------- 466 (1020)
Q Consensus 412 ~t~I~~~T~g~LLr~ll~------d-~~L~~~s~IIIDEaHE-Rs~~tD~ll~lLk~il~~r~----------------- 466 (1020)
+++|++++|=-|...+-. + ..|+.+.++|||.||- -..|.+.+..+++.+-....
T Consensus 131 ~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~MQNW~Hv~~v~~~lN~~P~~~~~~DfsRVR~w~Ldg 210 (442)
T PF06862_consen 131 SSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLLMQNWEHVLHVFEHLNLQPKKSHDTDFSRVRPWYLDG 210 (442)
T ss_pred cCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHHHhhHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHcC
Confidence 678999999555443332 1 2389999999999994 45566666666665432111
Q ss_pred ----CceEEEEeccCCHHH---HHHHhCC----CCeE-------eecCcccceeeeecCCCchhH-------HHHHHHHH
Q 001722 467 ----DFKLIVTSATLNAQK---FSDFFGS----VPIF-------HIPGRTFPVNTLYSKTPCEDY-------VEAAVKQA 521 (1020)
Q Consensus 467 ----~lklIlmSATld~~~---f~~~f~~----~pvi-------~i~gr~~pV~i~y~~~~~~dy-------l~~av~~~ 521 (1020)
-.|.|++|+..+++. |..+..| ..+. .+..-..++...|..-++.+. +.--.+.+
T Consensus 211 ~a~~~RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~~~s~~~~~d~Rf~yF~~~i 290 (442)
T PF06862_consen 211 QAKYYRQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFDCSSPADDPDARFKYFTKKI 290 (442)
T ss_pred cchheeEeEEecCCCCHHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEEecCCCcchhhhHHHHHHHHHH
Confidence 158999999987653 2232222 1111 111112344445544332221 11122334
Q ss_pred HHHhh-cCCCCCEEEEcCCHHHHHHHHHHHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHHHhcCCCeEEEEec
Q 001722 522 MTIHI-TSPPGDILIFMTGQDEIEAACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVAT 600 (1020)
Q Consensus 522 l~i~~-~~~~g~ILVFl~g~~eie~l~~~L~e~l~~l~~~~~~~~~~l~vl~lhs~L~~~eq~~I~~~f~~g~rkVIVAT 600 (1020)
+.... ....+.+|||+|+.=+--.+-..|.+ .++....+|--.+..+..++-..|..|..+|++-|
T Consensus 291 LP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~-------------~~~sF~~i~EYts~~~isRAR~~F~~G~~~iLL~T 357 (442)
T PF06862_consen 291 LPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKK-------------ENISFVQISEYTSNSDISRARSQFFHGRKPILLYT 357 (442)
T ss_pred HHHhhhccCCCcEEEEecchhhhHHHHHHHHh-------------cCCeEEEecccCCHHHHHHHHHHHHcCCceEEEEE
Confidence 43333 55678999999999888777666653 36677777777788888888889999999999999
Q ss_pred chhh--ccCCCCCeeEEEEcCCccceeccCCCCcccccccccCHHHHHHHhcccCC----CCCCEEEEccChhhH
Q 001722 601 NIAE--TSLTVDGIFYVIDTGYGKMKVYNPKMGMDALQVFPVSRAAADQRAGRAGR----TGPGTCYRLYTESAY 669 (1020)
Q Consensus 601 niaE--tGItIp~V~~VID~G~~K~~~yd~~~g~~~L~~~piS~as~~QRaGRAGR----~g~G~cyrLyt~~~~ 669 (1020)
-=+- .=..|.||+.||=.|+-. .|.--++.....+.... .+...|..|||+-+.
T Consensus 358 ER~HFfrRy~irGi~~viFY~~P~---------------~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk~D~ 417 (442)
T PF06862_consen 358 ERFHFFRRYRIRGIRHVIFYGPPE---------------NPQFYSELLNMLDESSGGEVDAADATVTVLYSKYDA 417 (442)
T ss_pred hHHhhhhhceecCCcEEEEECCCC---------------ChhHHHHHHhhhcccccccccccCceEEEEecHhHH
Confidence 6432 456789999999765422 22222333333332222 224899999998665
No 176
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.66 E-value=0.00055 Score=79.80 Aligned_cols=128 Identities=23% Similarity=0.222 Sum_probs=79.6
Q ss_pred hCCeEEEEecCCCchHHHHHHHHHHhcccCCCEEE--EEcccHHHHHHHHHHHHHHhccccCCEEEEEEeeeecCCCCcc
Q 001722 337 ENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVG--CTQPRRVAAMSVAKRVSEEMDTELGDKVGYAIRFEDVTGPSTL 414 (1020)
Q Consensus 337 ~~q~vII~gpTGSGKTtqi~q~Lle~~~~~~~~Il--~tqPrR~lA~qva~rva~e~~~~lG~~VGy~ir~e~~~s~~t~ 414 (1020)
.+.+++++||||+||||++..++.......+.+|. -+-+.|.++....++.++.++..+ +.
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~-----~~------------ 284 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPF-----YP------------ 284 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCe-----ee------------
Confidence 35678899999999999998887654333344443 345789999888888877655321 00
Q ss_pred EEEEchHHHHHHHhcCCCCCCccEEEEeCCCcCCCCccHHHHHHHHHHhh----cCCceEEEEeccCC---HHHHHHHhC
Q 001722 415 IKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVAR----RRDFKLIVTSATLN---AQKFSDFFG 487 (1020)
Q Consensus 415 I~~~T~g~LLr~ll~d~~L~~~s~IIIDEaHERs~~tD~ll~lLk~il~~----r~~lklIlmSATld---~~~f~~~f~ 487 (1020)
......+...+. -.++++||||=+. |+....-.+.-|..++.. .+.-.++++|||.. ...+.++|.
T Consensus 285 --~~~~~~l~~~l~----~~~~D~VLIDTaG-r~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~~~f~ 357 (432)
T PRK12724 285 --VKDIKKFKETLA----RDGSELILIDTAG-YSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLKAYE 357 (432)
T ss_pred --hHHHHHHHHHHH----hCCCCEEEEeCCC-CCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHHHHhc
Confidence 000122333332 2578999999876 444444444555555432 23457899999994 455556665
Q ss_pred C
Q 001722 488 S 488 (1020)
Q Consensus 488 ~ 488 (1020)
.
T Consensus 358 ~ 358 (432)
T PRK12724 358 S 358 (432)
T ss_pred C
Confidence 4
No 177
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=97.64 E-value=0.00035 Score=87.67 Aligned_cols=128 Identities=20% Similarity=0.195 Sum_probs=80.7
Q ss_pred HHcCCCcHHHHHHHHHHHHhCCeEEEEecCCCchHHHHHHHHHHhcccCC--CEEEEEcccHHHHHHHHHHHHHHhcccc
Q 001722 318 QRQYLPIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTTN--GIVGCTQPRRVAAMSVAKRVSEEMDTEL 395 (1020)
Q Consensus 318 ~R~~LPi~~~q~eil~~i~~~q~vII~gpTGSGKTtqi~q~Lle~~~~~~--~~Il~tqPrR~lA~qva~rva~e~~~~l 395 (1020)
......+..-|.+++..+..+++++|.|++|+||||.+-..+ +.....+ ..|+++.|+--+|..+. +..|..
T Consensus 318 ~~~~~~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~l~~i~-~~~~~~~~~~~v~l~ApTg~AA~~L~----e~~g~~- 391 (720)
T TIGR01448 318 KKLRKGLSEEQKQALDTAIQHKVVILTGGPGTGKTTITRAII-ELAEELGGLLPVGLAAPTGRAAKRLG----EVTGLT- 391 (720)
T ss_pred HhcCCCCCHHHHHHHHHHHhCCeEEEECCCCCCHHHHHHHHH-HHHHHcCCCceEEEEeCchHHHHHHH----HhcCCc-
Confidence 345677889999999999999999999999999999874432 2222223 46888899988886443 322211
Q ss_pred CCEEEEEEeeeecCCCCccEEEEchHHHHHHHh------cCCCCCCccEEEEeCCCcCCCCccHHHHHHHHHHhhcCCce
Q 001722 396 GDKVGYAIRFEDVTGPSTLIKYMTDGVLLRETL------KDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFK 469 (1020)
Q Consensus 396 G~~VGy~ir~e~~~s~~t~I~~~T~g~LLr~ll------~d~~L~~~s~IIIDEaHERs~~tD~ll~lLk~il~~r~~lk 469 (1020)
-.|-..++.... ........++||||||+ +++...+..+++.+ .++.+
T Consensus 392 ---------------------a~Tih~lL~~~~~~~~~~~~~~~~~~~llIvDEaS--Mvd~~~~~~Ll~~~---~~~~r 445 (720)
T TIGR01448 392 ---------------------ASTIHRLLGYGPDTFRHNHLEDPIDCDLLIVDESS--MMDTWLALSLLAAL---PDHAR 445 (720)
T ss_pred ---------------------cccHHHHhhccCCccchhhhhccccCCEEEEeccc--cCCHHHHHHHHHhC---CCCCE
Confidence 011111111100 00112457899999999 56666666666532 45778
Q ss_pred EEEEeccC
Q 001722 470 LIVTSATL 477 (1020)
Q Consensus 470 lIlmSATl 477 (1020)
+|++-=+-
T Consensus 446 lilvGD~~ 453 (720)
T TIGR01448 446 LLLVGDTD 453 (720)
T ss_pred EEEECccc
Confidence 88865443
No 178
>PRK10536 hypothetical protein; Provisional
Probab=97.64 E-value=0.00012 Score=80.04 Aligned_cols=59 Identities=22% Similarity=0.199 Sum_probs=45.7
Q ss_pred cCCCcHHHHHHHHHHHHhCCeEEEEecCCCchHHHHHHHHHHhcccC-CCEEEEEcccHH
Q 001722 320 QYLPIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTT-NGIVGCTQPRRV 378 (1020)
Q Consensus 320 ~~LPi~~~q~eil~~i~~~q~vII~gpTGSGKTtqi~q~Lle~~~~~-~~~Il~tqPrR~ 378 (1020)
..-|....|..++.++.++..+++.||+|||||+.+..+.++..... -.+|+++-|.-.
T Consensus 56 ~i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~ 115 (262)
T PRK10536 56 PILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQ 115 (262)
T ss_pred cccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCC
Confidence 34567788999999999999999999999999999877777544322 346777777643
No 179
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=97.63 E-value=0.00028 Score=86.64 Aligned_cols=135 Identities=17% Similarity=0.186 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHhCCeEEEEecCCCchHHHHHHHHHHh---cccCCCEEEEEcccHHHHHHHHHHHHHHhccccCCEEEEE
Q 001722 326 SVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLED---GYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELGDKVGYA 402 (1020)
Q Consensus 326 ~~q~eil~~i~~~q~vII~gpTGSGKTtqi~q~Lle~---~~~~~~~Il~tqPrR~lA~qva~rva~e~~~~lG~~VGy~ 402 (1020)
..|.+++.....++.+||.|++|+||||.+...+... .......|+++.||.-+|..+.+.+...+. .++ .
T Consensus 155 d~Qk~Av~~a~~~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~~~-~~~----~- 228 (615)
T PRK10875 155 DWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLGKALR-QLP----L- 228 (615)
T ss_pred HHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHhhhh-ccc----c-
Confidence 6788888888899999999999999999876554332 111234788999999998888877654321 111 0
Q ss_pred EeeeecCCCCccEEEEchHHHHHHHh-------cCCCCCCccEEEEeCCCcCCCCccHHHHHHHHHHhhcCCceEEEEe
Q 001722 403 IRFEDVTGPSTLIKYMTDGVLLRETL-------KDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTS 474 (1020)
Q Consensus 403 ir~e~~~s~~t~I~~~T~g~LLr~ll-------~d~~L~~~s~IIIDEaHERs~~tD~ll~lLk~il~~r~~lklIlmS 474 (1020)
.+...........|-..|+.... .....-.+++|||||+- +++..++..+++.+ .++.|+|++-
T Consensus 229 ---~~~~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaS--Mvd~~lm~~ll~al---~~~~rlIlvG 299 (615)
T PRK10875 229 ---TDEQKKRIPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEAS--MVDLPMMARLIDAL---PPHARVIFLG 299 (615)
T ss_pred ---chhhhhcCCCchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHh--cccHHHHHHHHHhc---ccCCEEEEec
Confidence 00000000001122222222110 01123356899999998 56666655555543 4567888765
No 180
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=97.62 E-value=0.0001 Score=87.22 Aligned_cols=64 Identities=20% Similarity=0.315 Sum_probs=51.2
Q ss_pred cHHHHHHHHHHHHhC-CeEEEEecCCCchHHHHHHHHHHhcccCCCEEEEEcccHHHHHHHHHHHH
Q 001722 324 IFSVRDELLQVIREN-QVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVS 388 (1020)
Q Consensus 324 i~~~q~eil~~i~~~-q~vII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~lA~qva~rva 388 (1020)
+.+.|.+++....++ ...+|.||+|+|||+.+...+.... ..+.+|+|+.|+.+++..+..|+.
T Consensus 186 ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlv-k~~k~VLVcaPSn~AVdNiverl~ 250 (649)
T KOG1803|consen 186 LNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLV-KQKKRVLVCAPSNVAVDNIVERLT 250 (649)
T ss_pred ccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHH-HcCCeEEEEcCchHHHHHHHHHhc
Confidence 446788888888777 5678899999999998766555543 346899999999999999998754
No 181
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.61 E-value=0.0007 Score=65.62 Aligned_cols=46 Identities=17% Similarity=0.206 Sum_probs=29.2
Q ss_pred HHHHHHHHh--CCeEEEEecCCCchHHHHHHHHHHhcccCCCEEEEEcc
Q 001722 329 DELLQVIRE--NQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQP 375 (1020)
Q Consensus 329 ~eil~~i~~--~q~vII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqP 375 (1020)
..+...+.. +..++|.||+|+|||+.+-..+... ...+..++++..
T Consensus 8 ~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~-~~~~~~v~~~~~ 55 (151)
T cd00009 8 EALREALELPPPKNLLLYGPPGTGKTTLARAIANEL-FRPGAPFLYLNA 55 (151)
T ss_pred HHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHh-hcCCCCeEEEeh
Confidence 344555555 7899999999999998765544332 222344555544
No 182
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.60 E-value=0.00024 Score=81.93 Aligned_cols=91 Identities=19% Similarity=0.244 Sum_probs=59.3
Q ss_pred CeEEEEecCCCchHHHHHHHHHHh-cccCCCEEEEEcccHHHHHHHHHHHHHHhccccCCEEEEEEeeeecCCCCccEEE
Q 001722 339 QVVVVVGETGSGKTTQLTQYLLED-GYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELGDKVGYAIRFEDVTGPSTLIKY 417 (1020)
Q Consensus 339 q~vII~gpTGSGKTtqi~q~Lle~-~~~~~~~Il~tqPrR~lA~qva~rva~e~~~~lG~~VGy~ir~e~~~s~~t~I~~ 417 (1020)
+++||.|.+|||||..+...+.+. ....+..++++.+...+...+...++.... .......+
T Consensus 2 ~v~~I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~l~~n~~l~~~l~~~l~~~~~-----------------~~~~~~~~ 64 (352)
T PF09848_consen 2 QVILITGGAGTGKTVLALNLAKELQNSEEGKKVLYLCGNHPLRNKLREQLAKKYN-----------------PKLKKSDF 64 (352)
T ss_pred eEEEEEecCCcCHHHHHHHHHHHhhccccCCceEEEEecchHHHHHHHHHhhhcc-----------------cchhhhhh
Confidence 578999999999999887766654 133356778888888888888877755430 00111222
Q ss_pred EchHHHHHHH-hcCCCCCCccEEEEeCCCc
Q 001722 418 MTDGVLLRET-LKDSDLDKYRVIVMDEAHE 446 (1020)
Q Consensus 418 ~T~g~LLr~l-l~d~~L~~~s~IIIDEaHE 446 (1020)
.....+...+ ........+++|||||||.
T Consensus 65 ~~~~~~i~~~~~~~~~~~~~DviivDEAqr 94 (352)
T PF09848_consen 65 RKPTSFINNYSESDKEKNKYDVIIVDEAQR 94 (352)
T ss_pred hhhHHHHhhcccccccCCcCCEEEEehhHh
Confidence 3333333322 2344578999999999993
No 183
>PRK06526 transposase; Provisional
Probab=97.60 E-value=0.00029 Score=77.66 Aligned_cols=40 Identities=20% Similarity=0.223 Sum_probs=27.4
Q ss_pred HHHHhCCeEEEEecCCCchHHHHHHHHHHhcccCCCEEEEE
Q 001722 333 QVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCT 373 (1020)
Q Consensus 333 ~~i~~~q~vII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~t 373 (1020)
+.+..+++++++||+|+|||+.+.....+.. ..+..|+++
T Consensus 93 ~fi~~~~nlll~Gp~GtGKThLa~al~~~a~-~~g~~v~f~ 132 (254)
T PRK06526 93 DFVTGKENVVFLGPPGTGKTHLAIGLGIRAC-QAGHRVLFA 132 (254)
T ss_pred chhhcCceEEEEeCCCCchHHHHHHHHHHHH-HCCCchhhh
Confidence 4456788999999999999998755444332 234455553
No 184
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=97.59 E-value=0.0082 Score=77.26 Aligned_cols=127 Identities=21% Similarity=0.160 Sum_probs=82.4
Q ss_pred cCCCcHHHHHHHHHHHHh-CCeEEEEecCCCchHHHHHHHHHHhcccCCCEEEEEcccHHHHHHHHHHHHHHhccccCCE
Q 001722 320 QYLPIFSVRDELLQVIRE-NQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELGDK 398 (1020)
Q Consensus 320 ~~LPi~~~q~eil~~i~~-~q~vII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~lA~qva~rva~e~~~~lG~~ 398 (1020)
..+.+..-|.+++..+.. +.+++|+|..|+||||.+ ..+.+.....+..|+.+.|+-.+|..+.. ..
T Consensus 343 ~g~~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~l-~~~~~~~e~~G~~V~~~ApTGkAA~~L~e----~t------- 410 (988)
T PRK13889 343 RGLVLSGEQADALAHVTDGRDLGVVVGYAGTGKSAML-GVAREAWEAAGYEVRGAALSGIAAENLEG----GS------- 410 (988)
T ss_pred cCCCCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHHH-HHHHHHHHHcCCeEEEecCcHHHHHHHhh----cc-------
Confidence 457789999999998887 568899999999999975 33444333345678889999887754432 11
Q ss_pred EEEEEeeeecCCCCccEEEEchHHHHHHHh-cCCCCCCccEEEEeCCCcCCCCccHHHHHHHHHHhhcCCceEEEEeccC
Q 001722 399 VGYAIRFEDVTGPSTLIKYMTDGVLLRETL-KDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTSATL 477 (1020)
Q Consensus 399 VGy~ir~e~~~s~~t~I~~~T~g~LLr~ll-~d~~L~~~s~IIIDEaHERs~~tD~ll~lLk~il~~r~~lklIlmSATl 477 (1020)
|. .-.|-..|+..+. ....+...++|||||+- .+.+..+..+|+.+. ....|||++-=+-
T Consensus 411 -Gi--------------~a~TI~sll~~~~~~~~~l~~~~vlIVDEAS--Mv~~~~m~~LL~~a~--~~garvVLVGD~~ 471 (988)
T PRK13889 411 -GI--------------ASRTIASLEHGWGQGRDLLTSRDVLVIDEAG--MVGTRQLERVLSHAA--DAGAKVVLVGDPQ 471 (988)
T ss_pred -Cc--------------chhhHHHHHhhhcccccccccCcEEEEECcc--cCCHHHHHHHHHhhh--hCCCEEEEECCHH
Confidence 11 0012222222111 12346678999999998 667776666666543 3467888876443
No 185
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.58 E-value=0.00072 Score=77.78 Aligned_cols=130 Identities=18% Similarity=0.213 Sum_probs=78.8
Q ss_pred HhCCeEEEEecCCCchHHHHHHHHHHhcccCCCEEE--EEcccHHHHHHHHHHHHHHhccccCCEEEEEEeeeecCCCCc
Q 001722 336 RENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVG--CTQPRRVAAMSVAKRVSEEMDTELGDKVGYAIRFEDVTGPST 413 (1020)
Q Consensus 336 ~~~q~vII~gpTGSGKTtqi~q~Lle~~~~~~~~Il--~tqPrR~lA~qva~rva~e~~~~lG~~VGy~ir~e~~~s~~t 413 (1020)
..+++++++||||+||||.+........ ..+.+|. .+-|.|+.|...-+..++.++..+ .
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA~~l~-~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv----------~------- 265 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGWQLL-KQNRTVGFITTDTFRSGAVEQFQGYADKLDVEL----------I------- 265 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHH-HcCCeEEEEeCCccCccHHHHHHHHhhcCCCCE----------E-------
Confidence 4578999999999999998776654432 2233443 345788877776666655443211 0
Q ss_pred cEEEEchHHHHHHHhcCCCCCCccEEEEeCCCcCCCCccHHHHHHHHHHh-hcCCceEEEEeccCCHHHHHHHh
Q 001722 414 LIKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVA-RRRDFKLIVTSATLNAQKFSDFF 486 (1020)
Q Consensus 414 ~I~~~T~g~LLr~ll~d~~L~~~s~IIIDEaHERs~~tD~ll~lLk~il~-~r~~lklIlmSATld~~~f~~~f 486 (1020)
...++.-+...+..-....++++||||=+- |+...+-++.-|+.+.. ..++.-++++|||.......+++
T Consensus 266 --~~~dp~dL~~al~~l~~~~~~D~VLIDTAG-r~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~~~~d~~~i~ 336 (407)
T PRK12726 266 --VATSPAELEEAVQYMTYVNCVDHILIDTVG-RNYLAEESVSEISAYTDVVHPDLTCFTFSSGMKSADVMTIL 336 (407)
T ss_pred --ecCCHHHHHHHHHHHHhcCCCCEEEEECCC-CCccCHHHHHHHHHHhhccCCceEEEECCCcccHHHHHHHH
Confidence 012344443332211123578999999998 55444455555555543 35567788899998665555544
No 186
>PRK14974 cell division protein FtsY; Provisional
Probab=97.45 E-value=0.00087 Score=76.65 Aligned_cols=122 Identities=22% Similarity=0.267 Sum_probs=70.7
Q ss_pred CCeEEEEecCCCchHHHHHHHHHHhcccCCCEEEEE--cccHHHHHHHHHHHHHHhccccCCEEEEEEeeeecCCCCccE
Q 001722 338 NQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCT--QPRRVAAMSVAKRVSEEMDTELGDKVGYAIRFEDVTGPSTLI 415 (1020)
Q Consensus 338 ~q~vII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~t--qPrR~lA~qva~rva~e~~~~lG~~VGy~ir~e~~~s~~t~I 415 (1020)
..+++++|++|+||||.+....... ...+.+|+++ -+.|..|....+..+..++..+-. . ......
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~~l-~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~-------~--~~g~dp-- 207 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAYYL-KKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIK-------H--KYGADP-- 207 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHH-HHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceec-------c--cCCCCH--
Confidence 4688999999999999876554322 2223455443 356777776666666666543210 0 000000
Q ss_pred EEEchHHHHHHHhcCCCCCCccEEEEeCCCcCCCCccHHHHHHHHHHh-hcCCceEEEEeccC
Q 001722 416 KYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVA-RRRDFKLIVTSATL 477 (1020)
Q Consensus 416 ~~~T~g~LLr~ll~d~~L~~~s~IIIDEaHERs~~tD~ll~lLk~il~-~r~~lklIlmSATl 477 (1020)
..++... +......++++||||.++ |.....-++.-|+.+.. ..|+..+++++||.
T Consensus 208 ----~~v~~~a-i~~~~~~~~DvVLIDTaG-r~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~ 264 (336)
T PRK14974 208 ----AAVAYDA-IEHAKARGIDVVLIDTAG-RMHTDANLMDELKKIVRVTKPDLVIFVGDALA 264 (336)
T ss_pred ----HHHHHHH-HHHHHhCCCCEEEEECCC-ccCCcHHHHHHHHHHHHhhCCceEEEeecccc
Confidence 0111111 111123468899999999 55544445555566543 46888999999998
No 187
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=97.42 E-value=0.00038 Score=73.95 Aligned_cols=66 Identities=18% Similarity=0.238 Sum_probs=52.1
Q ss_pred cHHHHHHHHHHHHhCCe-EEEEecCCCchHHHHHHHHHHhc-------ccCCCEEEEEcccHHHHHHHHHHHHH
Q 001722 324 IFSVRDELLQVIRENQV-VVVVGETGSGKTTQLTQYLLEDG-------YTTNGIVGCTQPRRVAAMSVAKRVSE 389 (1020)
Q Consensus 324 i~~~q~eil~~i~~~q~-vII~gpTGSGKTtqi~q~Lle~~-------~~~~~~Il~tqPrR~lA~qva~rva~ 389 (1020)
+.+.|.+++..+..+.. ++|.||+|+|||+.+...+.... ...+.+|+++.|+..++..+..++.+
T Consensus 2 ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 2 LNESQREAIQSALSSNGITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp --HHHHHHHHHHCTSSE-EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHcCCCCEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 35678999999988887 99999999999998776665541 44567999999999999999999865
No 188
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=97.41 E-value=0.0058 Score=74.46 Aligned_cols=92 Identities=18% Similarity=0.221 Sum_probs=74.7
Q ss_pred CCeEEEEecCCCCHHHHHHHHHHhcCCC--eEEEEecchhhccCCCCCeeEEEEcCCccceeccCCCCcccccccccCHH
Q 001722 566 PELLILPIYSQLPADLQAKIFEKAKEGT--RKCIVATNIAETSLTVDGIFYVIDTGYGKMKVYNPKMGMDALQVFPVSRA 643 (1020)
Q Consensus 566 ~~l~vl~lhs~L~~~eq~~I~~~f~~g~--rkVIVATniaEtGItIp~V~~VID~G~~K~~~yd~~~g~~~L~~~piS~a 643 (1020)
.++..+-|.|+.+-..|+.+++.|.... .-+|++|-...-|||+-..+.||- || .-.-|..--
T Consensus 800 l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~VIi--------hD-------~dFNP~dD~ 864 (941)
T KOG0389|consen 800 LGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANTVII--------HD-------IDFNPYDDK 864 (941)
T ss_pred cCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccceEEE--------ee-------cCCCCcccc
Confidence 3778888999999999999999997543 467789999999999998888873 33 111266666
Q ss_pred HHHHHhcccCCCCCCEEEEccChhhHhhc
Q 001722 644 AADQRAGRAGRTGPGTCYRLYTESAYLNE 672 (1020)
Q Consensus 644 s~~QRaGRAGR~g~G~cyrLyt~~~~~~~ 672 (1020)
+|.-|+-|.|-+.|-.+|||.|+...+..
T Consensus 865 QAEDRcHRvGQtkpVtV~rLItk~TIEE~ 893 (941)
T KOG0389|consen 865 QAEDRCHRVGQTKPVTVYRLITKSTIEEG 893 (941)
T ss_pred hhHHHHHhhCCcceeEEEEEEecCcHHHH
Confidence 78889999999999999999999877543
No 189
>PRK04296 thymidine kinase; Provisional
Probab=97.39 E-value=0.0012 Score=69.58 Aligned_cols=111 Identities=19% Similarity=0.210 Sum_probs=60.3
Q ss_pred CCeEEEEecCCCchHHHHHHHHHHhcccCCCEEEEEccc---HHHHHHHHHHHHHHhccccCCEEEEEEeeeecCCCCcc
Q 001722 338 NQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPR---RVAAMSVAKRVSEEMDTELGDKVGYAIRFEDVTGPSTL 414 (1020)
Q Consensus 338 ~q~vII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPr---R~lA~qva~rva~e~~~~lG~~VGy~ir~e~~~s~~t~ 414 (1020)
+..++++||+|+||||.+..++..... .+.+++++-|. +.....++ .. +| ..+ . .
T Consensus 2 g~i~litG~~GsGKTT~~l~~~~~~~~-~g~~v~i~k~~~d~~~~~~~i~----~~----lg----~~~--~-------~ 59 (190)
T PRK04296 2 AKLEFIYGAMNSGKSTELLQRAYNYEE-RGMKVLVFKPAIDDRYGEGKVV----SR----IG----LSR--E-------A 59 (190)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHHHHH-cCCeEEEEeccccccccCCcEe----cC----CC----Ccc--c-------c
Confidence 467899999999999999888776543 35677777552 21111111 11 11 000 0 0
Q ss_pred EEEEchHHHHHHHhcCCCCCCccEEEEeCCCcCCCCccHHHHHHHHHHhhcCCceEEEEecc
Q 001722 415 IKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTSAT 476 (1020)
Q Consensus 415 I~~~T~g~LLr~ll~d~~L~~~s~IIIDEaHERs~~tD~ll~lLk~il~~r~~lklIlmSAT 476 (1020)
+.+.....+++.+.. .-.++++|||||+|- +..+.+..+++.+. .....+|++.-.
T Consensus 60 ~~~~~~~~~~~~~~~--~~~~~dvviIDEaq~--l~~~~v~~l~~~l~--~~g~~vi~tgl~ 115 (190)
T PRK04296 60 IPVSSDTDIFELIEE--EGEKIDCVLIDEAQF--LDKEQVVQLAEVLD--DLGIPVICYGLD 115 (190)
T ss_pred eEeCChHHHHHHHHh--hCCCCCEEEEEcccc--CCHHHHHHHHHHHH--HcCCeEEEEecC
Confidence 112333444444433 345789999999983 33333444444432 235556655444
No 190
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.38 E-value=0.0016 Score=77.83 Aligned_cols=127 Identities=21% Similarity=0.227 Sum_probs=71.0
Q ss_pred HHHhCCeEEEEecCCCchHHHHHHHHHHhcccC-CCEEEE--EcccHHHHHHHHHHHHHHhccccCCEEEEEEeeeecCC
Q 001722 334 VIRENQVVVVVGETGSGKTTQLTQYLLEDGYTT-NGIVGC--TQPRRVAAMSVAKRVSEEMDTELGDKVGYAIRFEDVTG 410 (1020)
Q Consensus 334 ~i~~~q~vII~gpTGSGKTtqi~q~Lle~~~~~-~~~Il~--tqPrR~lA~qva~rva~e~~~~lG~~VGy~ir~e~~~s 410 (1020)
.+..+++++|+||||+||||.+........... +.+|.+ +-+.|..+..........++ ..+ ..
T Consensus 346 ~l~~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLg----v~v----~~----- 412 (559)
T PRK12727 346 PLERGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLG----IAV----HE----- 412 (559)
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccC----cee----Ee-----
Confidence 355789999999999999999766554432221 233433 34667766555444432222 111 10
Q ss_pred CCccEEEEchHHHHHHHhcCCCCCCccEEEEeCCCcCCCCccHHHHHHHHHHhhcCCceEEEEeccCCHHHHH
Q 001722 411 PSTLIKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTSATLNAQKFS 483 (1020)
Q Consensus 411 ~~t~I~~~T~g~LLr~ll~d~~L~~~s~IIIDEaHERs~~tD~ll~lLk~il~~r~~lklIlmSATld~~~f~ 483 (1020)
..+.+.+...+. .+.++++||||.+- ++.....+...|..+......-.+++++++.....+.
T Consensus 413 ------a~d~~~L~~aL~---~l~~~DLVLIDTaG-~s~~D~~l~eeL~~L~aa~~~a~lLVLpAtss~~Dl~ 475 (559)
T PRK12727 413 ------ADSAESLLDLLE---RLRDYKLVLIDTAG-MGQRDRALAAQLNWLRAARQVTSLLVLPANAHFSDLD 475 (559)
T ss_pred ------cCcHHHHHHHHH---HhccCCEEEecCCC-cchhhHHHHHHHHHHHHhhcCCcEEEEECCCChhHHH
Confidence 012233333222 24579999999998 3433334444444443334456788999998544443
No 191
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=97.37 E-value=0.037 Score=76.50 Aligned_cols=247 Identities=14% Similarity=0.133 Sum_probs=135.4
Q ss_pred CCCcHHHHHHHHHHHHhC--CeEEEEecCCCchHHHHHHHHHHhcccCCCEEEEEcccHHHHHHHHHHHHHHhccccCCE
Q 001722 321 YLPIFSVRDELLQVIREN--QVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELGDK 398 (1020)
Q Consensus 321 ~LPi~~~q~eil~~i~~~--q~vII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~lA~qva~rva~e~~~~lG~~ 398 (1020)
.+++..-|.+.+..+..+ +++||.|+.|+||||.+-. +.+.....+..|+++.|+--+|..+.+.. |..- .+
T Consensus 427 ~~~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~l~~-l~~~~~~~G~~V~~lAPTgrAA~~L~e~~----g~~A-~T 500 (1960)
T TIGR02760 427 EFALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEIAQL-LLHLASEQGYEIQIITAGSLSAQELRQKI----PRLA-ST 500 (1960)
T ss_pred cCCCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHHHHH-HHHHHHhcCCeEEEEeCCHHHHHHHHHHh----cchh-hh
Confidence 567888999999988775 8999999999999998643 33333334568999999988776655432 2110 00
Q ss_pred EEEEEeeeec-CCCCccEEEEchHHHHHHHhcCCCCCCccEEEEeCCCcCCCCccHHHHHHHHHHhhcCCceEEEEeccC
Q 001722 399 VGYAIRFEDV-TGPSTLIKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTSATL 477 (1020)
Q Consensus 399 VGy~ir~e~~-~s~~t~I~~~T~g~LLr~ll~d~~L~~~s~IIIDEaHERs~~tD~ll~lLk~il~~r~~lklIlmSATl 477 (1020)
+. ++-.. ..+ ....|...++ ..+..+...++||||||- .+.+..+..+++.+. ..+.|||++-=+-
T Consensus 501 i~---~~l~~l~~~---~~~~tv~~fl---~~~~~l~~~~vlIVDEAs--Ml~~~~~~~Ll~~a~--~~garvVlvGD~~ 567 (1960)
T TIGR02760 501 FI---TWVKNLFND---DQDHTVQGLL---DKSSPFSNKDIFVVDEAN--KLSNNELLKLIDKAE--QHNSKLILLNDSA 567 (1960)
T ss_pred HH---HHHHhhccc---ccchhHHHhh---cccCCCCCCCEEEEECCC--CCCHHHHHHHHHHHh--hcCCEEEEEcChh
Confidence 00 00000 000 0011111222 123345678999999998 677777777777653 3467888876544
Q ss_pred C------HHHHHHHh-CCCCeEeecCcc-cceeeeecCCCchhHHHHHHHHHHHHhhcCCCCCEEEEcCCHHHHHHHHHH
Q 001722 478 N------AQKFSDFF-GSVPIFHIPGRT-FPVNTLYSKTPCEDYVEAAVKQAMTIHITSPPGDILIFMTGQDEIEAACFA 549 (1020)
Q Consensus 478 d------~~~f~~~f-~~~pvi~i~gr~-~pV~i~y~~~~~~dyl~~av~~~l~i~~~~~~g~ILVFl~g~~eie~l~~~ 549 (1020)
. -..|..+- .+.|.+...... ....+........+.+..+....+.+. ......+|+.++..+...+...
T Consensus 568 QL~sV~aG~~f~~L~~~gv~t~~l~~i~rq~~~v~i~~~~~~~r~~~ia~~y~~L~--~~r~~tliv~~t~~dr~~Ln~~ 645 (1960)
T TIGR02760 568 QRQGMSAGSAIDLLKEGGVTTYAWVDTKQQKASVEISEAVDKLRVDYIASAWLDLT--PDRQNSQVLATTHREQQDLTQI 645 (1960)
T ss_pred hcCccccchHHHHHHHCCCcEEEeecccccCcceeeeccCchHHHHHHHHHHHhcc--cccCceEEEcCCcHHHHHHHHH
Confidence 1 12343322 235554433210 111121222222222333333333322 2344589999999999999999
Q ss_pred HHHHHHHhhccccCCCCCeEEEEec-CCCCHHHHHHHHHHhcCC
Q 001722 550 LKERMEQLISSTTREVPELLILPIY-SQLPADLQAKIFEKAKEG 592 (1020)
Q Consensus 550 L~e~l~~l~~~~~~~~~~l~vl~lh-s~L~~~eq~~I~~~f~~g 592 (1020)
++..|..-.. -......+..|- ..|+..++... ..|+.|
T Consensus 646 iR~~L~~~G~---L~~~~~~~~~L~p~~lt~~e~r~~-~~Yr~G 685 (1960)
T TIGR02760 646 IRNALKQEGQ---LSRQEVTVPTLKPVNLTGIQRRNA-AHYKQG 685 (1960)
T ss_pred HHHHHHHcCC---cCCCceEEEEeccCCCCHHHHhhH-hhcCCC
Confidence 9887753211 112233333333 34666665533 445444
No 192
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.34 E-value=0.00067 Score=64.95 Aligned_cols=39 Identities=33% Similarity=0.369 Sum_probs=26.3
Q ss_pred CCeEEEEecCCCchHHHHHHHHHHhcccCCCEEEEEcccH
Q 001722 338 NQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRR 377 (1020)
Q Consensus 338 ~q~vII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR 377 (1020)
++.++|+||+||||||.+...+...... ...++++.+..
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~-~~~~~~~~~~~ 40 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPP-GGGVIYIDGED 40 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCC-CCCEEEECCEE
Confidence 5789999999999999987765544322 12355554443
No 193
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.31 E-value=0.0019 Score=80.53 Aligned_cols=124 Identities=15% Similarity=0.146 Sum_probs=80.8
Q ss_pred hCCeEEEEecCCCchHHHHHHHHHHhcccCC-CEEEEE--cccHHHHHHHHHHHHHHhccccCCEEEEEEeeeecCCCCc
Q 001722 337 ENQVVVVVGETGSGKTTQLTQYLLEDGYTTN-GIVGCT--QPRRVAAMSVAKRVSEEMDTELGDKVGYAIRFEDVTGPST 413 (1020)
Q Consensus 337 ~~q~vII~gpTGSGKTtqi~q~Lle~~~~~~-~~Il~t--qPrR~lA~qva~rva~e~~~~lG~~VGy~ir~e~~~s~~t 413 (1020)
.++++.++||||+||||.+...........+ .+|.++ -+.|+.+.+.-+.+++.++..+-
T Consensus 184 ~g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~----------------- 246 (767)
T PRK14723 184 QGGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVH----------------- 246 (767)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCcc-----------------
Confidence 4678999999999999998776544322333 355442 35688887777777666553210
Q ss_pred cEEEEchHHHHHHHhcCCCCCCccEEEEeCCCcCCCCccHHHHHHHHHHh-hcCCceEEEEeccCCHHHHH
Q 001722 414 LIKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVA-RRRDFKLIVTSATLNAQKFS 483 (1020)
Q Consensus 414 ~I~~~T~g~LLr~ll~d~~L~~~s~IIIDEaHERs~~tD~ll~lLk~il~-~r~~lklIlmSATld~~~f~ 483 (1020)
...++..+...+. .+.++++||||=+- |+....-++..+..+.. ..|.-.++++|||...+.+.
T Consensus 247 --~~~~~~~l~~al~---~~~~~D~VLIDTAG-Rs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~ 311 (767)
T PRK14723 247 --AVKDAADLRFALA---ALGDKHLVLIDTVG-MSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLN 311 (767)
T ss_pred --ccCCHHHHHHHHH---HhcCCCEEEEeCCC-CCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHH
Confidence 0124444433332 35678999999998 66655556677776653 45667899999999655554
No 194
>PF05729 NACHT: NACHT domain
Probab=97.30 E-value=0.0011 Score=66.73 Aligned_cols=60 Identities=17% Similarity=0.269 Sum_probs=41.0
Q ss_pred cEEEEeCCCcCCCCcc-----HHHHHHHHHHhh--cCCceEEEEeccCCHHHHHHHhCCCCeEeecC
Q 001722 437 RVIVMDEAHERSLSTD-----VLFGILKKVVAR--RRDFKLIVTSATLNAQKFSDFFGSVPIFHIPG 496 (1020)
Q Consensus 437 s~IIIDEaHERs~~tD-----~ll~lLk~il~~--r~~lklIlmSATld~~~f~~~f~~~pvi~i~g 496 (1020)
-+||||-++|-..... .+..++..++.. .++.++|++|.+-....+..++.....+.+++
T Consensus 83 ~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~ 149 (166)
T PF05729_consen 83 VLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEP 149 (166)
T ss_pred eEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECC
Confidence 3588898887544332 255556666655 67899999988877777888887665555543
No 195
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.26 E-value=0.0022 Score=75.37 Aligned_cols=129 Identities=14% Similarity=0.127 Sum_probs=78.8
Q ss_pred HhCCeEEEEecCCCchHHHHHHHHHHhcccC---CCEEEEEcccHHHHHHHHHHHHHHhccccCCEEEEEEeeeecCCCC
Q 001722 336 RENQVVVVVGETGSGKTTQLTQYLLEDGYTT---NGIVGCTQPRRVAAMSVAKRVSEEMDTELGDKVGYAIRFEDVTGPS 412 (1020)
Q Consensus 336 ~~~q~vII~gpTGSGKTtqi~q~Lle~~~~~---~~~Il~tqPrR~lA~qva~rva~e~~~~lG~~VGy~ir~e~~~s~~ 412 (1020)
..+.++.++||||+||||.+........... ...++..-..|+.+.+....+++.+|..+- + .
T Consensus 189 ~~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~--~--------v---- 254 (420)
T PRK14721 189 EQGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVR--S--------I---- 254 (420)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCcee--c--------C----
Confidence 4678999999999999999876554332111 223445556688888877777666553310 0 0
Q ss_pred ccEEEEchHHHHHHHhcCCCCCCccEEEEeCCCcCCCCccHHHHHHHHHHhhc-CCceEEEEeccCCHHH---HHHHhC
Q 001722 413 TLIKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARR-RDFKLIVTSATLNAQK---FSDFFG 487 (1020)
Q Consensus 413 t~I~~~T~g~LLr~ll~d~~L~~~s~IIIDEaHERs~~tD~ll~lLk~il~~r-~~lklIlmSATld~~~---f~~~f~ 487 (1020)
-+..-+...+. .+.++++|+||.+- |+.....+...++.+.... +.-.++++|||...+. +...|.
T Consensus 255 -----~~~~dl~~al~---~l~~~d~VLIDTaG-rsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~~~~~f~ 324 (420)
T PRK14721 255 -----KDIADLQLMLH---ELRGKHMVLIDTVG-MSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEVISAYQ 324 (420)
T ss_pred -----CCHHHHHHHHH---HhcCCCEEEecCCC-CCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHHHHHHhc
Confidence 11111222221 26788999999985 5555455666777664432 3456788999985444 444554
No 196
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=97.16 E-value=0.0031 Score=67.97 Aligned_cols=108 Identities=19% Similarity=0.223 Sum_probs=78.5
Q ss_pred HHHHHcCCCcHHHHHHHHHHHHh---CCeEEEEecCCCchHHHHHHHHHHhcccCCC-EEEEEcccHHHHHHHHHHHHHH
Q 001722 315 LAEQRQYLPIFSVRDELLQVIRE---NQVVVVVGETGSGKTTQLTQYLLEDGYTTNG-IVGCTQPRRVAAMSVAKRVSEE 390 (1020)
Q Consensus 315 l~~~R~~LPi~~~q~eil~~i~~---~q~vII~gpTGSGKTtqi~q~Lle~~~~~~~-~Il~tqPrR~lA~qva~rva~e 390 (1020)
+.+....+=|.+.|.++...+.+ +.+.+...-.|.|||+++...+.-. +.++. -|.+++| +.+..+...-+...
T Consensus 15 l~E~e~~iliR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsVI~Pmla~~-LAdg~~LvrviVp-k~Ll~q~~~~L~~~ 92 (229)
T PF12340_consen 15 LFEIESNILIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSVIVPMLALA-LADGSRLVRVIVP-KALLEQMRQMLRSR 92 (229)
T ss_pred HHHHHcCceeeHHHHHHHHHHhCCCCCCCeEeeecccCCccchHHHHHHHH-HcCCCcEEEEEcC-HHHHHHHHHHHHHH
Confidence 66777889999999999999876 4789999999999999875544433 33344 4555666 56888888888887
Q ss_pred hccccCCEEEEEEeeeecCC-----------------CCccEEEEchHHHHH
Q 001722 391 MDTELGDKVGYAIRFEDVTG-----------------PSTLIKYMTDGVLLR 425 (1020)
Q Consensus 391 ~~~~lG~~VGy~ir~e~~~s-----------------~~t~I~~~T~g~LLr 425 (1020)
+|.-++..| |.+.|...+. ...-|+++||+.++.
T Consensus 93 lg~l~~r~i-~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilS 143 (229)
T PF12340_consen 93 LGGLLNRRI-YHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILS 143 (229)
T ss_pred HHHHhCCee-EEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHH
Confidence 776666655 5677765332 144588899987654
No 197
>PRK08181 transposase; Validated
Probab=97.15 E-value=0.0055 Score=68.16 Aligned_cols=115 Identities=15% Similarity=0.214 Sum_probs=61.9
Q ss_pred HHHhCCeEEEEecCCCchHHHHHHHHHHhcccCCCEEEEEcccHHHHHHHHHHHHHHhccccCCEEEEEEeeeecCCCCc
Q 001722 334 VIRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELGDKVGYAIRFEDVTGPST 413 (1020)
Q Consensus 334 ~i~~~q~vII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~lA~qva~rva~e~~~~lG~~VGy~ir~e~~~s~~t 413 (1020)
.+..+++++++||+|+|||..+..+..+. ...+..|+++. ...+. ..+..... .
T Consensus 102 ~~~~~~nlll~Gp~GtGKTHLa~Aia~~a-~~~g~~v~f~~-~~~L~----~~l~~a~~------------------~-- 155 (269)
T PRK08181 102 WLAKGANLLLFGPPGGGKSHLAAAIGLAL-IENGWRVLFTR-TTDLV----QKLQVARR------------------E-- 155 (269)
T ss_pred HHhcCceEEEEecCCCcHHHHHHHHHHHH-HHcCCceeeee-HHHHH----HHHHHHHh------------------C--
Confidence 35678899999999999998765443332 22344565543 22222 22211000 0
Q ss_pred cEEEEchHHHHHHHhcCCCCCCccEEEEeCCCcCCCCc---cHHHHHHHHHHhhcCCceEEEEeccCCHHHHHHHhCC
Q 001722 414 LIKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLST---DVLFGILKKVVARRRDFKLIVTSATLNAQKFSDFFGS 488 (1020)
Q Consensus 414 ~I~~~T~g~LLr~ll~d~~L~~~s~IIIDEaHERs~~t---D~ll~lLk~il~~r~~lklIlmSATld~~~f~~~f~~ 488 (1020)
.+...+++. +.++++|||||++-..... ..++.++..... . +-+++|.-.+...+...|++
T Consensus 156 ----~~~~~~l~~------l~~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~---~-~s~IiTSN~~~~~w~~~~~D 219 (269)
T PRK08181 156 ----LQLESAIAK------LDKFDLLILDDLAYVTKDQAETSVLFELISARYE---R-RSILITANQPFGEWNRVFPD 219 (269)
T ss_pred ----CcHHHHHHH------HhcCCEEEEeccccccCCHHHHHHHHHHHHHHHh---C-CCEEEEcCCCHHHHHHhcCC
Confidence 011112222 4578999999998533322 234444443322 2 33555555667777777754
No 198
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.14 E-value=0.0036 Score=74.74 Aligned_cols=129 Identities=16% Similarity=0.176 Sum_probs=74.4
Q ss_pred hCCeEEEEecCCCchHHHHHHHHHHhcccCCC-EEE--EEcccHHHHHHHHHHHHHHhccccCCEEEEEEeeeecCCCCc
Q 001722 337 ENQVVVVVGETGSGKTTQLTQYLLEDGYTTNG-IVG--CTQPRRVAAMSVAKRVSEEMDTELGDKVGYAIRFEDVTGPST 413 (1020)
Q Consensus 337 ~~q~vII~gpTGSGKTtqi~q~Lle~~~~~~~-~Il--~tqPrR~lA~qva~rva~e~~~~lG~~VGy~ir~e~~~s~~t 413 (1020)
.++++.++||||+||||.+...........+. +|. ..-+.|+.|.+..+.+++.++..+- + ..
T Consensus 255 ~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~--~--------~~---- 320 (484)
T PRK06995 255 RGGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVH--A--------VK---- 320 (484)
T ss_pred CCcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCee--c--------cC----
Confidence 46799999999999999987766544333232 343 3357788888877777776653210 0 00
Q ss_pred cEEEEchHHHHHHHhcCCCCCCccEEEEeCCCcCCCCccHHHHHHHHHHhh-cCCceEEEEeccCCHHHH---HHHhCC
Q 001722 414 LIKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVAR-RRDFKLIVTSATLNAQKF---SDFFGS 488 (1020)
Q Consensus 414 ~I~~~T~g~LLr~ll~d~~L~~~s~IIIDEaHERs~~tD~ll~lLk~il~~-r~~lklIlmSATld~~~f---~~~f~~ 488 (1020)
+..-+...+ ..+.++++++||.+- |+.....+...+..+... .+.-.+++++||.....+ ..+|..
T Consensus 321 -----~~~Dl~~aL---~~L~d~d~VLIDTaG-r~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~~~l~~i~~~f~~ 390 (484)
T PRK06995 321 -----DAADLRLAL---SELRNKHIVLIDTIG-MSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHGDTLNEVVQAYRG 390 (484)
T ss_pred -----CchhHHHHH---HhccCCCeEEeCCCC-cChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcHHHHHHHHHHhcc
Confidence 011111122 246778999999986 444333333333322211 133478999999965444 445543
No 199
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=97.14 E-value=0.0027 Score=70.24 Aligned_cols=122 Identities=17% Similarity=0.077 Sum_probs=75.1
Q ss_pred cCCCcHHHHHHHHHHHHhCCeEEEEecCCCchHHHHHHHHHHhcccCCCEEEEEcccHHHHHHHHHHHHHHhccccCCEE
Q 001722 320 QYLPIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELGDKV 399 (1020)
Q Consensus 320 ~~LPi~~~q~eil~~i~~~q~vII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~lA~qva~rva~e~~~~lG~~V 399 (1020)
..+..+..|--..-++..|+ |+...||=|||+.+..+.+-..+. +..|-|+.....||..=++.+...+ ..+|..|
T Consensus 74 ~g~~p~~vQll~~l~L~~G~--laEm~TGEGKTli~~l~a~~~AL~-G~~V~vvT~NdyLA~RD~~~~~~~y-~~LGlsv 149 (266)
T PF07517_consen 74 LGLRPYDVQLLGALALHKGR--LAEMKTGEGKTLIAALPAALNALQ-GKGVHVVTSNDYLAKRDAEEMRPFY-EFLGLSV 149 (266)
T ss_dssp TS----HHHHHHHHHHHTTS--EEEESTTSHHHHHHHHHHHHHHTT-SS-EEEEESSHHHHHHHHHHHHHHH-HHTT--E
T ss_pred cCCcccHHHHhhhhhcccce--eEEecCCCCcHHHHHHHHHHHHHh-cCCcEEEeccHHHhhccHHHHHHHH-HHhhhcc
Confidence 34444555544444444444 899999999999987666555554 4456566677777777776664444 4678888
Q ss_pred EEEEeeeecC----CCCccEEEEchHHHHHHHhcCC--------CCCCccEEEEeCCC
Q 001722 400 GYAIRFEDVT----GPSTLIKYMTDGVLLRETLKDS--------DLDKYRVIVMDEAH 445 (1020)
Q Consensus 400 Gy~ir~e~~~----s~~t~I~~~T~g~LLr~ll~d~--------~L~~~s~IIIDEaH 445 (1020)
|+........ .-...|+|+|...+..-.+.|. ....+.++|||||+
T Consensus 150 ~~~~~~~~~~~r~~~Y~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvD 207 (266)
T PF07517_consen 150 GIITSDMSSEERREAYAADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVD 207 (266)
T ss_dssp EEEETTTEHHHHHHHHHSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHH
T ss_pred ccCccccCHHHHHHHHhCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccc
Confidence 8755433211 1135799999987765433321 25788999999998
No 200
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.12 E-value=0.0055 Score=69.82 Aligned_cols=125 Identities=21% Similarity=0.211 Sum_probs=72.7
Q ss_pred hCCeEEEEecCCCchHHHHHHHHHHhcccCCCEEEEE--cccHHHHHHHHHHHHHHhccccCCEEEEEEeeeecCCCCcc
Q 001722 337 ENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCT--QPRRVAAMSVAKRVSEEMDTELGDKVGYAIRFEDVTGPSTL 414 (1020)
Q Consensus 337 ~~q~vII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~t--qPrR~lA~qva~rva~e~~~~lG~~VGy~ir~e~~~s~~t~ 414 (1020)
.++++.++||+|+||||.+........ ..+++|+++ =+.|.+|.+.....+...+. ++... .....
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~-~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i------~~~~~-~~~~d---- 180 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYK-AQGKKVLLAAGDTFRAAAIEQLQVWGERVGV------PVIAQ-KEGAD---- 180 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH-hcCCeEEEEecCccchhhHHHHHHHHHHcCc------eEEEe-CCCCC----
Confidence 467899999999999998766544332 234555543 35677776666555554432 22111 00001
Q ss_pred EEEEchHHHHHHHhcCCCCCCccEEEEeCCCcCCCCccHHHHHHHHHHh-------hcCCceEEEEeccCCH
Q 001722 415 IKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVA-------RRRDFKLIVTSATLNA 479 (1020)
Q Consensus 415 I~~~T~g~LLr~ll~d~~L~~~s~IIIDEaHERs~~tD~ll~lLk~il~-------~r~~lklIlmSATld~ 479 (1020)
+.......+......+|++||||=+. |....+-++.-|+.+.. ..|+-.+++++||...
T Consensus 181 -----pa~~v~~~l~~~~~~~~D~ViIDTaG-r~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~ 246 (318)
T PRK10416 181 -----PASVAFDAIQAAKARGIDVLIIDTAG-RLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQ 246 (318)
T ss_pred -----HHHHHHHHHHHHHhCCCCEEEEeCCC-CCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCh
Confidence 11111111111124679999999998 66666666666666543 2466789999999843
No 201
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=97.09 E-value=0.0039 Score=69.56 Aligned_cols=139 Identities=17% Similarity=0.175 Sum_probs=82.0
Q ss_pred CCeEEEEecCCCchHHHHHHHHHHhcccCCCEEEEEcccHHHHHHHHHHHHHHhccccCCEEE-EEEeeeecCCCCccEE
Q 001722 338 NQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELGDKVG-YAIRFEDVTGPSTLIK 416 (1020)
Q Consensus 338 ~q~vII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~lA~qva~rva~e~~~~lG~~VG-y~ir~e~~~s~~t~I~ 416 (1020)
..-.+|==.||.||--++.-.|++.......+.+++...-.|-....+.+.. .|..--.... ......+...-..-|+
T Consensus 62 R~Gf~lGDGtGvGKGR~iAgiI~~n~l~Gr~r~vwvS~s~dL~~Da~RDl~D-IG~~~i~v~~l~~~~~~~~~~~~~Gvl 140 (303)
T PF13872_consen 62 RAGFFLGDGTGVGKGRQIAGIILENWLRGRKRAVWVSVSNDLKYDAERDLRD-IGADNIPVHPLNKFKYGDIIRLKEGVL 140 (303)
T ss_pred CcEEEeccCCCcCccchhHHHHHHHHHcCCCceEEEECChhhhhHHHHHHHH-hCCCcccceechhhccCcCCCCCCCcc
Confidence 3455555689999999999999998776556678887777887776666643 2321000000 0011111112234589
Q ss_pred EEchHHHHHHHhcCC----CC--------CC-ccEEEEeCCCc-CCCCcc-----HHHHHHHHHHhhcCCceEEEEeccC
Q 001722 417 YMTDGVLLRETLKDS----DL--------DK-YRVIVMDEAHE-RSLSTD-----VLFGILKKVVARRRDFKLIVTSATL 477 (1020)
Q Consensus 417 ~~T~g~LLr~ll~d~----~L--------~~-~s~IIIDEaHE-Rs~~tD-----~ll~lLk~il~~r~~lklIlmSATl 477 (1020)
|+|.-.|........ -| .+ =.+||+||||. -+.... -.-.....+..+.|+.++|.+|||-
T Consensus 141 F~TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfdgvivfDEcH~akn~~~~~~~~sk~g~avl~LQ~~LP~ARvvY~SATg 220 (303)
T PF13872_consen 141 FSTYSTLISESQSGGKYRSRLDQLVDWCGEDFDGVIVFDECHKAKNLSSGSKKPSKTGIAVLELQNRLPNARVVYASATG 220 (303)
T ss_pred chhHHHHHhHHhccCCccchHHHHHHHHhcCCCceEEeccchhcCCCCccCccccHHHHHHHHHHHhCCCCcEEEecccc
Confidence 999888776642210 01 11 25999999994 122221 1111223344456889999999997
No 202
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.06 E-value=0.0072 Score=67.21 Aligned_cols=130 Identities=17% Similarity=0.247 Sum_probs=70.3
Q ss_pred hCCeEEEEecCCCchHHHHHHHHHHhcccCCCEEEE--EcccHHHHHHHHHHHHHHhccccCCEEEEEEeeeecCCCCcc
Q 001722 337 ENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGC--TQPRRVAAMSVAKRVSEEMDTELGDKVGYAIRFEDVTGPSTL 414 (1020)
Q Consensus 337 ~~q~vII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~--tqPrR~lA~qva~rva~e~~~~lG~~VGy~ir~e~~~s~~t~ 414 (1020)
.+..+.++|++|+||||.+....... ...+..+.+ +-+.|+.+.+.-+..++.++ +.+. .
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l-~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~--------~~~~--~------- 135 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQF-HGKKKTVGFITTDHSRIGTVQQLQDYVKTIG--------FEVI--A------- 135 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHH-HHcCCeEEEEecCCCCHHHHHHHHHHhhhcC--------ceEE--e-------
Confidence 45899999999999999876544432 122334433 33666555544333333222 1111 0
Q ss_pred EEEEchHHHHHHHhcCCCCCCccEEEEeCCCcCCCCccHHHHHHHHHH-hhcCCceEEEEeccCCH---HHHHHHhC
Q 001722 415 IKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVV-ARRRDFKLIVTSATLNA---QKFSDFFG 487 (1020)
Q Consensus 415 I~~~T~g~LLr~ll~d~~L~~~s~IIIDEaHERs~~tD~ll~lLk~il-~~r~~lklIlmSATld~---~~f~~~f~ 487 (1020)
..++.-+...+..-....++++||||-+- |+....-++.-++.++ ...|+..++++|||... ..+.+.|.
T Consensus 136 --~~~~~~l~~~l~~l~~~~~~D~ViIDt~G-r~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~d~~~~~~~f~ 209 (270)
T PRK06731 136 --VRDEAAMTRALTYFKEEARVDYILIDTAG-KNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITNFK 209 (270)
T ss_pred --cCCHHHHHHHHHHHHhcCCCCEEEEECCC-CCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHHHHHHHHHHhC
Confidence 01233333222111123478999999998 4544334444444444 34566678899999843 34444554
No 203
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.98 E-value=0.0096 Score=65.30 Aligned_cols=115 Identities=16% Similarity=0.229 Sum_probs=65.5
Q ss_pred CeEEEEecCCCchHHHHHHHHHHhcccCCCEEEEEcccHHHHHHHHHHHHHHhccccCCEEEEEEeeeecCCCCccEEEE
Q 001722 339 QVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELGDKVGYAIRFEDVTGPSTLIKYM 418 (1020)
Q Consensus 339 q~vII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~lA~qva~rva~e~~~~lG~~VGy~ir~e~~~s~~t~I~~~ 418 (1020)
..+++.|++|+|||+.+...+.+. ...+..|+++. +.++...+...+.. . -.
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l-~~~g~~v~~it-----~~~l~~~l~~~~~~----------------~------~~ 151 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNEL-LLRGKSVLIIT-----VADIMSAMKDTFSN----------------S------ET 151 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHH-HhcCCeEEEEE-----HHHHHHHHHHHHhh----------------c------cc
Confidence 589999999999999765544332 23345666652 22233333221110 0 01
Q ss_pred chHHHHHHHhcCCCCCCccEEEEeCCCcCCCCccHHHHHHHHHHhhcC-CceEEEEeccCCHHHHHHHhCC
Q 001722 419 TDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRR-DFKLIVTSATLNAQKFSDFFGS 488 (1020)
Q Consensus 419 T~g~LLr~ll~d~~L~~~s~IIIDEaHERs~~tD~ll~lLk~il~~r~-~lklIlmSATld~~~f~~~f~~ 488 (1020)
+...+++. +.++++|||||++.-. .+++-..++-.++..|- +.+-+++|.-++.+.+.+++++
T Consensus 152 ~~~~~l~~------l~~~dlLvIDDig~~~-~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl~~~~l~~~~g~ 215 (244)
T PRK07952 152 SEEQLLND------LSNVDLLVIDEIGVQT-ESRYEKVIINQIVDRRSSSKRPTGMLTNSNMEEMTKLLGE 215 (244)
T ss_pred cHHHHHHH------hccCCEEEEeCCCCCC-CCHHHHHHHHHHHHHHHhCCCCEEEeCCCCHHHHHHHhCh
Confidence 22223332 5678999999999543 55655556666665442 2344555666677777777653
No 204
>PF13173 AAA_14: AAA domain
Probab=96.96 E-value=0.0043 Score=60.88 Aligned_cols=99 Identities=19% Similarity=0.131 Sum_probs=55.5
Q ss_pred hCCeEEEEecCCCchHHHHHHHHHHhcccCCCEEEEEcccHHHHHHHHHHHHHHhccccCCEEEEEEeeeecCCCCccEE
Q 001722 337 ENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELGDKVGYAIRFEDVTGPSTLIK 416 (1020)
Q Consensus 337 ~~q~vII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~lA~qva~rva~e~~~~lG~~VGy~ir~e~~~s~~t~I~ 416 (1020)
++++++|.||.|+||||.+-+++.+.. ....++++.=.......... ..
T Consensus 1 n~~~~~l~G~R~vGKTtll~~~~~~~~--~~~~~~yi~~~~~~~~~~~~---------------------------~~-- 49 (128)
T PF13173_consen 1 NRKIIILTGPRGVGKTTLLKQLAKDLL--PPENILYINFDDPRDRRLAD---------------------------PD-- 49 (128)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhc--ccccceeeccCCHHHHHHhh---------------------------hh--
Confidence 468899999999999999988776543 22334443110000000000 00
Q ss_pred EEchHHHHHHHhcCCCCCCccEEEEeCCCcCCCCccHHHHHHHHHHhhcCCceEEEEeccC
Q 001722 417 YMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTSATL 477 (1020)
Q Consensus 417 ~~T~g~LLr~ll~d~~L~~~s~IIIDEaHERs~~tD~ll~lLk~il~~r~~lklIlmSATl 477 (1020)
....+++. ...+-.+|||||+|.-. -+...++.+....++.++|+++-..
T Consensus 50 --~~~~~~~~-----~~~~~~~i~iDEiq~~~----~~~~~lk~l~d~~~~~~ii~tgS~~ 99 (128)
T PF13173_consen 50 --LLEYFLEL-----IKPGKKYIFIDEIQYLP----DWEDALKFLVDNGPNIKIILTGSSS 99 (128)
T ss_pred --hHHHHHHh-----hccCCcEEEEehhhhhc----cHHHHHHHHHHhccCceEEEEccch
Confidence 01111111 11155789999999432 2445666666666788888876654
No 205
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=96.96 E-value=0.0061 Score=78.86 Aligned_cols=127 Identities=21% Similarity=0.201 Sum_probs=83.5
Q ss_pred cCCCcHHHHHHHHHHHH-hCCeEEEEecCCCchHHHHHHHHHHhcccCCCEEEEEcccHHHHHHHHHHHHHHhccccCCE
Q 001722 320 QYLPIFSVRDELLQVIR-ENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELGDK 398 (1020)
Q Consensus 320 ~~LPi~~~q~eil~~i~-~~q~vII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~lA~qva~rva~e~~~~lG~~ 398 (1020)
....+..-|.+++..+. .+++++|+|+.|+||||.+-. +.+.....+..|+.+.|+-.+|..+. +..|..
T Consensus 378 ~~~~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~l~~-~~~~~e~~G~~V~g~ApTgkAA~~L~----e~~Gi~---- 448 (1102)
T PRK13826 378 RHARLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTMMKA-AREAWEAAGYRVVGGALAGKAAEGLE----KEAGIQ---- 448 (1102)
T ss_pred cCCCCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHHHHH-HHHHHHHcCCeEEEEcCcHHHHHHHH----HhhCCC----
Confidence 35678999999999874 578999999999999998754 33333334567888899987775543 222211
Q ss_pred EEEEEeeeecCCCCccEEEEchHHH-HHHHhcCCCCCCccEEEEeCCCcCCCCccHHHHHHHHHHhhcCCceEEEEeccC
Q 001722 399 VGYAIRFEDVTGPSTLIKYMTDGVL-LRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTSATL 477 (1020)
Q Consensus 399 VGy~ir~e~~~s~~t~I~~~T~g~L-Lr~ll~d~~L~~~s~IIIDEaHERs~~tD~ll~lLk~il~~r~~lklIlmSATl 477 (1020)
+ .|-..+ ++.-.....+..-++|||||+. ++.+..+..+|+.+. ....+||++.=+-
T Consensus 449 -a-----------------~TIas~ll~~~~~~~~l~~~~vlVIDEAs--Mv~~~~m~~Ll~~~~--~~garvVLVGD~~ 506 (1102)
T PRK13826 449 -S-----------------RTLSSWELRWNQGRDQLDNKTVFVLDEAG--MVASRQMALFVEAVT--RAGAKLVLVGDPE 506 (1102)
T ss_pred -e-----------------eeHHHHHhhhccCccCCCCCcEEEEECcc--cCCHHHHHHHHHHHH--hcCCEEEEECCHH
Confidence 0 111222 2211122346777899999998 677777777776653 2467888876443
No 206
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=96.95 E-value=0.0039 Score=79.11 Aligned_cols=138 Identities=15% Similarity=0.176 Sum_probs=78.6
Q ss_pred HhCCeEEEEecCCCchHHHHHHHHHHhccc-CCCEEEEEcccHHHHHHHHHHHH-----HHhccccCC-EEEEEEeeeec
Q 001722 336 RENQVVVVVGETGSGKTTQLTQYLLEDGYT-TNGIVGCTQPRRVAAMSVAKRVS-----EEMDTELGD-KVGYAIRFEDV 408 (1020)
Q Consensus 336 ~~~q~vII~gpTGSGKTtqi~q~Lle~~~~-~~~~Il~tqPrR~lA~qva~rva-----~e~~~~lG~-~VGy~ir~e~~ 408 (1020)
..+.++.+.++||+|||.+++..+++.... ...++++++|+.+.-..+.+-+. +.+....+. .+-+.+--...
T Consensus 57 ~~~~n~~~~M~TGtGKT~~~~~~i~~l~~~~~~~~fii~vp~~aI~egv~~~l~s~~~k~hF~~~y~~~~~~~~~~~S~k 136 (986)
T PRK15483 57 DDKANIDIKMETGTGKTYVYTRLMYELHQKYGLFKFIIVVPTPAIKEGTRNFIQSDYAKQHFSQFYENTRIELYVINAGD 136 (986)
T ss_pred CccceEEEEeCCCCCHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHHhhHHHHHHHHHHHcCCceeEEEEEecCc
Confidence 345789999999999999877666654322 12478999999888777665543 223322332 23322211000
Q ss_pred ---------C-------------CCCccEEEEchHHHHHHHhc----CCC-----------CCC-ccEEEEeCCCcCCCC
Q 001722 409 ---------T-------------GPSTLIKYMTDGVLLRETLK----DSD-----------LDK-YRVIVMDEAHERSLS 450 (1020)
Q Consensus 409 ---------~-------------s~~t~I~~~T~g~LLr~ll~----d~~-----------L~~-~s~IIIDEaHERs~~ 450 (1020)
. .....|++||.++|-..... |.. +.. =-+||+||.|.-.-.
T Consensus 137 ~~k~gr~~~~~~i~~Fa~~~~~~~~~I~Ilv~niqa~n~~~~~~~~~D~~l~~g~~~p~~~i~~~~PivIiDEPh~~~~~ 216 (986)
T PRK15483 137 KKKSGRKNFPAQLSNFVKASRQNSNTIHVLLINAGMLNSASMTRDDYDQTLLGGFTSPVDALAATRPVVIIDEPHRFPRD 216 (986)
T ss_pred ccccccccChHHHHHHHhccccCCCceEEEEEehHHhcccccccchhhhhhccCCCChHHHHHhCCCEEEEECCCCCCcc
Confidence 0 11457999999988654321 100 111 137999999943221
Q ss_pred ccHHHHHHHHHHhhcCCceEEEEeccCC
Q 001722 451 TDVLFGILKKVVARRRDFKLIVTSATLN 478 (1020)
Q Consensus 451 tD~ll~lLk~il~~r~~lklIlmSATld 478 (1020)
.. -...+....|.. ++..|||.+
T Consensus 217 ~k----~~~~i~~lnpl~-~lrysAT~~ 239 (986)
T PRK15483 217 NK----FYQAIEALKPQM-IIRFGATFP 239 (986)
T ss_pred hH----HHHHHHhcCccc-EEEEeeecC
Confidence 11 113334445444 566999994
No 207
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=96.89 E-value=0.0028 Score=69.79 Aligned_cols=24 Identities=33% Similarity=0.621 Sum_probs=19.3
Q ss_pred CCeEEEEecCCCchHHHHHHHHHH
Q 001722 338 NQVVVVVGETGSGKTTQLTQYLLE 361 (1020)
Q Consensus 338 ~q~vII~gpTGSGKTtqi~q~Lle 361 (1020)
...++|+||+|+||||.+-.++.+
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~ 66 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKR 66 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHh
Confidence 347899999999999998765443
No 208
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=96.87 E-value=0.0019 Score=72.11 Aligned_cols=67 Identities=21% Similarity=0.263 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHhCCeEEEEecCCCchHHHHHHHH---HHhcccCCCEEEEEcccHHHHHHHHHHHHHHhcc
Q 001722 325 FSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYL---LEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDT 393 (1020)
Q Consensus 325 ~~~q~eil~~i~~~q~vII~gpTGSGKTtqi~q~L---le~~~~~~~~Il~tqPrR~lA~qva~rva~e~~~ 393 (1020)
.+-|.+++.. .+..++|.|..|||||+.+..-+ +....-...+|+|+.+++.+|..+..|+...++.
T Consensus 2 ~~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~~~~~Il~lTft~~aa~e~~~ri~~~l~~ 71 (315)
T PF00580_consen 2 TDEQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIAYLLYEGGVPPERILVLTFTNAAAQEMRERIRELLEE 71 (315)
T ss_dssp -HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHHHhhccccCChHHheecccCHHHHHHHHHHHHHhcCc
Confidence 3457778777 67899999999999999876544 3333223457999999999999999999876553
No 209
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.85 E-value=0.015 Score=64.86 Aligned_cols=124 Identities=23% Similarity=0.262 Sum_probs=70.4
Q ss_pred CCeEEEEecCCCchHHHHHHHHHHhcccCCCEEEEE--cccHHHHHHHHHHHHHHhccccCCEEEEEEeeeecCCCCccE
Q 001722 338 NQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCT--QPRRVAAMSVAKRVSEEMDTELGDKVGYAIRFEDVTGPSTLI 415 (1020)
Q Consensus 338 ~q~vII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~t--qPrR~lA~qva~rva~e~~~~lG~~VGy~ir~e~~~s~~t~I 415 (1020)
.++++++|+||+||||.+....... ...+.+|+++ =+.|..+....+.+++.++.. + +.......+
T Consensus 72 ~~vi~l~G~~G~GKTTt~akLA~~l-~~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~------~-~~~~~~~dp---- 139 (272)
T TIGR00064 72 PNVILFVGVNGVGKTTTIAKLANKL-KKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVD------V-IKQKEGADP---- 139 (272)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHH-HhcCCEEEEEeCCCCCHHHHHHHHHHHHhCCeE------E-EeCCCCCCH----
Confidence 4688899999999999876655433 2234455443 367887776666666655421 1 000000000
Q ss_pred EEEchHHHHHHHhcCCCCCCccEEEEeCCCcCCCCccHHHHHHHHHHhh-------cCCceEEEEeccCCH
Q 001722 416 KYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVAR-------RRDFKLIVTSATLNA 479 (1020)
Q Consensus 416 ~~~T~g~LLr~ll~d~~L~~~s~IIIDEaHERs~~tD~ll~lLk~il~~-------r~~lklIlmSATld~ 479 (1020)
.......+ ......+|++||||=+. |...-..++.-|+.+... .++-.+++++||...
T Consensus 140 ----~~~~~~~l-~~~~~~~~D~ViIDT~G-~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~ 204 (272)
T TIGR00064 140 ----AAVAFDAI-QKAKARNIDVVLIDTAG-RLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQ 204 (272)
T ss_pred ----HHHHHHHH-HHHHHCCCCEEEEeCCC-CCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCH
Confidence 01111111 11124679999999988 444433445445544421 267789999999843
No 210
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=96.82 E-value=0.0033 Score=73.01 Aligned_cols=57 Identities=19% Similarity=0.269 Sum_probs=42.7
Q ss_pred HHHHHHHHHH------HhCCeEEEEecCCCchHHHHHHHHHHhcccCCCEEEEEcccHHHHHHH
Q 001722 326 SVRDELLQVI------RENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSV 383 (1020)
Q Consensus 326 ~~q~eil~~i------~~~q~vII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~lA~qv 383 (1020)
.-|+.+++.+ .++.++.|.|+-|+|||+.+-.+.. .....+..++++.|+-+||..+
T Consensus 4 ~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~-~~~~~~~~~~~~a~tg~AA~~i 66 (364)
T PF05970_consen 4 EEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIID-YLRSRGKKVLVTAPTGIAAFNI 66 (364)
T ss_pred HHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHH-HhccccceEEEecchHHHHHhc
Confidence 3456665555 6788999999999999998755433 2233456899999999999777
No 211
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=96.82 E-value=0.031 Score=68.48 Aligned_cols=146 Identities=14% Similarity=0.151 Sum_probs=90.9
Q ss_pred HHHHHHhCCeEEEEecCCCchHHHHHHHHHHhcccCCCEEEEEcccHHHHHHHHHHHHHHhcc--------ccCCEEE--
Q 001722 331 LLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDT--------ELGDKVG-- 400 (1020)
Q Consensus 331 il~~i~~~q~vII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~lA~qva~rva~e~~~--------~lG~~VG-- 400 (1020)
+++.. +.+..++.+|=|.|||+.+..++.-.....+.+|++|.|+..-+.++.+++...+.. ..+..+.
T Consensus 181 ~~~~f-kq~~tV~taPRqrGKS~iVgi~l~~La~f~Gi~IlvTAH~~~ts~evF~rv~~~le~lg~~~~fp~~~~iv~vk 259 (752)
T PHA03333 181 IFDEY-GKCYTAATVPRRCGKTTIMAIILAAMISFLEIDIVVQAQRKTMCLTLYNRVETVVHAYQHKPWFPEEFKIVTLK 259 (752)
T ss_pred HHHHH-hhcceEEEeccCCCcHHHHHHHHHHHHHhcCCeEEEECCChhhHHHHHHHHHHHHHHhccccccCCCceEEEee
Confidence 34433 445678889999999998765544333213568999999999999998887665541 1111111
Q ss_pred ---EEEeeeecCC---CCccEEEEchHHHHHHHhcCCC-CCCccEEEEeCCCcCCCCccHHHHHHHHHHhhcCCceEEEE
Q 001722 401 ---YAIRFEDVTG---PSTLIKYMTDGVLLRETLKDSD-LDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVT 473 (1020)
Q Consensus 401 ---y~ir~e~~~s---~~t~I~~~T~g~LLr~ll~d~~-L~~~s~IIIDEaHERs~~tD~ll~lLk~il~~r~~lklIlm 473 (1020)
-.+.+..-.. ..+.|.|++.+ .+.. -..+++||||||+. +..+.+..++--+.. .+-++|++
T Consensus 260 gg~E~I~f~~p~gak~G~sti~F~Ars-------~~s~RG~~~DLLIVDEAAf--I~~~~l~aIlP~l~~--~~~k~IiI 328 (752)
T PHA03333 260 GTDENLEYISDPAAKEGKTTAHFLASS-------PNAARGQNPDLVIVDEAAF--VNPGALLSVLPLMAV--KGTKQIHI 328 (752)
T ss_pred CCeeEEEEecCcccccCcceeEEeccc-------CCCcCCCCCCEEEEECccc--CCHHHHHHHHHHHcc--CCCceEEE
Confidence 0122221111 11455565433 1111 13578999999994 444666665555443 36789999
Q ss_pred eccCCHHHHHHHhCC
Q 001722 474 SATLNAQKFSDFFGS 488 (1020)
Q Consensus 474 SATld~~~f~~~f~~ 488 (1020)
|.+-+.+.+..++++
T Consensus 329 SS~~~~~s~tS~L~n 343 (752)
T PHA03333 329 SSPVDADSWISRVGE 343 (752)
T ss_pred eCCCCcchHHHHhhh
Confidence 999988888888765
No 212
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=96.78 E-value=0.0033 Score=70.67 Aligned_cols=64 Identities=16% Similarity=0.090 Sum_probs=46.9
Q ss_pred cHHHHHH----HHHHHHhCCeEEEEecCCCchHHHHHHHHHHhcccCC-----CEEEEEcccHHHHHHHHHHH
Q 001722 324 IFSVRDE----LLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTTN-----GIVGCTQPRRVAAMSVAKRV 387 (1020)
Q Consensus 324 i~~~q~e----il~~i~~~q~vII~gpTGSGKTtqi~q~Lle~~~~~~-----~~Il~tqPrR~lA~qva~rv 387 (1020)
.++.|.+ +...+.++.+++|.+|||+|||..++.+++......+ .+|++..++..+..+....+
T Consensus 9 ~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l 81 (289)
T smart00488 9 PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEEL 81 (289)
T ss_pred CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHH
Confidence 4777877 5566778999999999999999988776654332222 27888889888766665444
No 213
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=96.78 E-value=0.0033 Score=70.67 Aligned_cols=64 Identities=16% Similarity=0.090 Sum_probs=46.9
Q ss_pred cHHHHHH----HHHHHHhCCeEEEEecCCCchHHHHHHHHHHhcccCC-----CEEEEEcccHHHHHHHHHHH
Q 001722 324 IFSVRDE----LLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTTN-----GIVGCTQPRRVAAMSVAKRV 387 (1020)
Q Consensus 324 i~~~q~e----il~~i~~~q~vII~gpTGSGKTtqi~q~Lle~~~~~~-----~~Il~tqPrR~lA~qva~rv 387 (1020)
.++.|.+ +...+.++.+++|.+|||+|||..++.+++......+ .+|++..++..+..+....+
T Consensus 9 ~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l 81 (289)
T smart00489 9 PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEEL 81 (289)
T ss_pred CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHH
Confidence 4777877 5566778999999999999999988776654332222 27888889888766665444
No 214
>PRK09183 transposase/IS protein; Provisional
Probab=96.74 E-value=0.014 Score=64.53 Aligned_cols=39 Identities=28% Similarity=0.290 Sum_probs=27.8
Q ss_pred HHhCCeEEEEecCCCchHHHHHHHHHHhcccCCCEEEEEc
Q 001722 335 IRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQ 374 (1020)
Q Consensus 335 i~~~q~vII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tq 374 (1020)
+..+.+++|+||+|+|||+.+..+..... ..+..|.++.
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al~~~a~-~~G~~v~~~~ 137 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIALGYEAV-RAGIKVRFTT 137 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHHHHHHH-HcCCeEEEEe
Confidence 66789999999999999998766544322 2344666653
No 215
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=96.74 E-value=0.013 Score=62.81 Aligned_cols=26 Identities=27% Similarity=0.442 Sum_probs=20.6
Q ss_pred HhCCeEEEEecCCCchHHHHHHHHHH
Q 001722 336 RENQVVVVVGETGSGKTTQLTQYLLE 361 (1020)
Q Consensus 336 ~~~q~vII~gpTGSGKTtqi~q~Lle 361 (1020)
..+..++|.||+|+|||+.+-.+..+
T Consensus 36 ~~~~~lll~G~~G~GKT~la~~~~~~ 61 (226)
T TIGR03420 36 KGDRFLYLWGESGSGKSHLLQAACAA 61 (226)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 34678999999999999988654443
No 216
>PRK10867 signal recognition particle protein; Provisional
Probab=96.66 E-value=0.016 Score=68.66 Aligned_cols=122 Identities=24% Similarity=0.282 Sum_probs=69.8
Q ss_pred CeEEEEecCCCchHHHHHHHHHHhcccCCCE--EEEEcccHHHHHHHHHHHHHHhccccCCEEEEEEeeeecCCCCccEE
Q 001722 339 QVVVVVGETGSGKTTQLTQYLLEDGYTTNGI--VGCTQPRRVAAMSVAKRVSEEMDTELGDKVGYAIRFEDVTGPSTLIK 416 (1020)
Q Consensus 339 q~vII~gpTGSGKTtqi~q~Lle~~~~~~~~--Il~tqPrR~lA~qva~rva~e~~~~lG~~VGy~ir~e~~~s~~t~I~ 416 (1020)
.+++++|++||||||.+..+........+.+ ++.+=++|.+|....+.+++..+.. + |... ..
T Consensus 101 ~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~----v-~~~~----~~------ 165 (433)
T PRK10867 101 TVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVP----V-FPSG----DG------ 165 (433)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCe----E-EecC----CC------
Confidence 4788999999999998766554332221333 3445688988887766666554422 1 1110 00
Q ss_pred EEchHHHHHHHhcCCCCCCccEEEEeCCCcCCCCccHHHHHHHHHHh-hcCCceEEEEeccC
Q 001722 417 YMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVA-RRRDFKLIVTSATL 477 (1020)
Q Consensus 417 ~~T~g~LLr~ll~d~~L~~~s~IIIDEaHERs~~tD~ll~lLk~il~-~r~~lklIlmSATl 477 (1020)
..+.-+...........+|++||||=+- |...-+.++..|..+.. ..|+--+++++||.
T Consensus 166 -~dp~~i~~~a~~~a~~~~~DvVIIDTaG-rl~~d~~lm~eL~~i~~~v~p~evllVlda~~ 225 (433)
T PRK10867 166 -QDPVDIAKAALEEAKENGYDVVIVDTAG-RLHIDEELMDELKAIKAAVNPDEILLVVDAMT 225 (433)
T ss_pred -CCHHHHHHHHHHHHHhcCCCEEEEeCCC-CcccCHHHHHHHHHHHHhhCCCeEEEEEeccc
Confidence 1223333332222224578999999987 44433444455444433 34555678888876
No 217
>PRK08727 hypothetical protein; Validated
Probab=96.63 E-value=0.0099 Score=64.71 Aligned_cols=34 Identities=15% Similarity=0.133 Sum_probs=22.4
Q ss_pred CeEEEEecCCCchHHHHHHHHHHhcccCCCEEEEE
Q 001722 339 QVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCT 373 (1020)
Q Consensus 339 q~vII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~t 373 (1020)
+.++|.|++|+|||+.+-.+..+ ....+.+++|+
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~-~~~~~~~~~y~ 75 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAA-AEQAGRSSAYL 75 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH-HHHcCCcEEEE
Confidence 56999999999999876544333 22334455554
No 218
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.63 E-value=0.007 Score=67.82 Aligned_cols=56 Identities=29% Similarity=0.310 Sum_probs=37.2
Q ss_pred hCCeEEEEecCCCchHHHHHHHHHHhccc-CCCEE--EEEcccHHHHHHHHHHHHHHhc
Q 001722 337 ENQVVVVVGETGSGKTTQLTQYLLEDGYT-TNGIV--GCTQPRRVAAMSVAKRVSEEMD 392 (1020)
Q Consensus 337 ~~q~vII~gpTGSGKTtqi~q~Lle~~~~-~~~~I--l~tqPrR~lA~qva~rva~e~~ 392 (1020)
.+++++++||||+||||.+..++...... .+.+| +-+-|.|+.+.......+..++
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~ 251 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILG 251 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhC
Confidence 46689999999999999987765544332 12333 3345777777766666655544
No 219
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=96.59 E-value=0.015 Score=62.67 Aligned_cols=37 Identities=16% Similarity=0.254 Sum_probs=24.4
Q ss_pred hCCeEEEEecCCCchHHHHHHHHHHhcccCCCEEEEEc
Q 001722 337 ENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQ 374 (1020)
Q Consensus 337 ~~q~vII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tq 374 (1020)
.+..++|+||+|+|||+.+-.+..+ ....+..++++.
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ai~~~-~~~~~~~~~~i~ 77 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQALVAD-ASYGGRNARYLD 77 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH-HHhCCCcEEEEe
Confidence 4578999999999999987554433 222334444443
No 220
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=96.57 E-value=0.0098 Score=65.73 Aligned_cols=21 Identities=29% Similarity=0.366 Sum_probs=17.1
Q ss_pred CCeEEEEecCCCchHHHHHHH
Q 001722 338 NQVVVVVGETGSGKTTQLTQY 358 (1020)
Q Consensus 338 ~q~vII~gpTGSGKTtqi~q~ 358 (1020)
..++++.||+||||||.+-.+
T Consensus 42 ~~~vll~GppGtGKTtlA~~i 62 (261)
T TIGR02881 42 VLHMIFKGNPGTGKTTVARIL 62 (261)
T ss_pred cceEEEEcCCCCCHHHHHHHH
Confidence 357899999999999986443
No 221
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=96.56 E-value=0.0051 Score=76.33 Aligned_cols=66 Identities=18% Similarity=0.244 Sum_probs=53.5
Q ss_pred CcHHHHHHHHHHHHhC-CeEEEEecCCCchHHHHHHHHHHhcccCCCEEEEEcccHHHHHHHHHHHHH
Q 001722 323 PIFSVRDELLQVIREN-QVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSE 389 (1020)
Q Consensus 323 Pi~~~q~eil~~i~~~-q~vII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~lA~qva~rva~ 389 (1020)
.+...|.+++..+..+ ..++|.||+|+|||+.+...+.... ..+.+|+|+.|+..++..+..++..
T Consensus 157 ~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~~ii~~~~-~~g~~VLv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 157 NLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLVELIRQLV-KRGLRVLVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred CCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHHHHHHHHH-HcCCCEEEEcCcHHHHHHHHHHHHh
Confidence 4567788888887766 7899999999999998876655433 3356899999999999999999965
No 222
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=96.53 E-value=0.0012 Score=68.74 Aligned_cols=117 Identities=20% Similarity=0.275 Sum_probs=56.5
Q ss_pred EEEecCCCchHHHHHHHHHHhcccCCCEEEEEcccHHHHHHHHHHHHHHhccccCCEEEEEEeee-------ecCCCCcc
Q 001722 342 VVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELGDKVGYAIRFE-------DVTGPSTL 414 (1020)
Q Consensus 342 II~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~lA~qva~rva~e~~~~lG~~VGy~ir~e-------~~~s~~t~ 414 (1020)
||+|+-|.|||+.+-..+.........+|+||.|+...+..+.+.+...+. ..||...-. ........
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~~~~~~~I~vtAP~~~~~~~lf~~~~~~l~-----~~~~~~~~~~~~~~~~~~~~~~~~ 75 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALIQKGKIRILVTAPSPENVQTLFEFAEKGLK-----ALGYKEEKKKRIGQIIKLRFNKQR 75 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSSS-----EEEE-SS--S-HHHHHCC-------------------------------CCC
T ss_pred CccCCCCCCHHHHHHHHHHHHHHhcCceEEEecCCHHHHHHHHHHHHhhcc-----ccccccccccccccccccccccce
Confidence 689999999999987765544333335799999999998888776543322 223321100 01123567
Q ss_pred EEEEchHHHHHHHhcCCCCCCccEEEEeCCCcCCCCccHHHHHHHHHHhhcCCceEEEEeccCC
Q 001722 415 IKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTSATLN 478 (1020)
Q Consensus 415 I~~~T~g~LLr~ll~d~~L~~~s~IIIDEaHERs~~tD~ll~lLk~il~~r~~lklIlmSATld 478 (1020)
|.|..|..+... -...+++|||||= .+. +.+|+.++.. ...|++|.|+.
T Consensus 76 i~f~~Pd~l~~~------~~~~DlliVDEAA--aIp----~p~L~~ll~~---~~~vv~stTi~ 124 (177)
T PF05127_consen 76 IEFVAPDELLAE------KPQADLLIVDEAA--AIP----LPLLKQLLRR---FPRVVFSTTIH 124 (177)
T ss_dssp --B--HHHHCCT----------SCEEECTGG--GS-----HHHHHHHHCC---SSEEEEEEEBS
T ss_pred EEEECCHHHHhC------cCCCCEEEEechh--cCC----HHHHHHHHhh---CCEEEEEeecc
Confidence 888888776432 2245899999986 233 3455555533 34567788883
No 223
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=96.51 E-value=0.0095 Score=73.80 Aligned_cols=50 Identities=22% Similarity=0.389 Sum_probs=29.5
Q ss_pred HHHHHhcCCCCCCccEEEEeCCCcCCCCccHHHHHHHHHHhhcCCceEEEEe
Q 001722 423 LLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTS 474 (1020)
Q Consensus 423 LLr~ll~d~~L~~~s~IIIDEaHERs~~tD~ll~lLk~il~~r~~lklIlmS 474 (1020)
++......+.-.++.+|||||+|. +..+..-.+||.+-.-.++.++|+.+
T Consensus 107 LIe~a~~~P~~gr~KVIIIDEah~--LT~~A~NALLKtLEEPP~~v~FILaT 156 (830)
T PRK07003 107 LLERAVYAPVDARFKVYMIDEVHM--LTNHAFNAMLKTLEEPPPHVKFILAT 156 (830)
T ss_pred HHHHHHhccccCCceEEEEeChhh--CCHHHHHHHHHHHHhcCCCeEEEEEE
Confidence 333333445556899999999994 44444555666543333455555544
No 224
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.49 E-value=0.026 Score=66.95 Aligned_cols=120 Identities=27% Similarity=0.311 Sum_probs=68.1
Q ss_pred CCeEEEEecCCCchHHHHHHHHHHhcccCCCEEEE--EcccHHHHHHHHHHHHHHhccccCCEEEEEEeeeecCCCCccE
Q 001722 338 NQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGC--TQPRRVAAMSVAKRVSEEMDTELGDKVGYAIRFEDVTGPSTLI 415 (1020)
Q Consensus 338 ~q~vII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~--tqPrR~lA~qva~rva~e~~~~lG~~VGy~ir~e~~~s~~t~I 415 (1020)
..+++++|++|+||||.+........ ..+.+|++ +=+.|.+|....+.++...+.++ |. ....
T Consensus 95 p~vI~lvG~~GsGKTTtaakLA~~L~-~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~-----~~-----~~~~---- 159 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTAAKLARYFK-KKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPF-----YG-----DPDN---- 159 (437)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHH-HcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcE-----Ee-----cCCc----
Confidence 35788999999999998766543322 22334433 34667777776666666544321 10 0000
Q ss_pred EEEchHHHHHHHhcCCCCCCccEEEEeCCCcCCCCccHHHHHHHHHHh-hcCCceEEEEeccC
Q 001722 416 KYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVA-RRRDFKLIVTSATL 477 (1020)
Q Consensus 416 ~~~T~g~LLr~ll~d~~L~~~s~IIIDEaHERs~~tD~ll~lLk~il~-~r~~lklIlmSATl 477 (1020)
..+..+++..+.. +..+++||||.+- |....+-++.-|+.+.. ..++..+++++||.
T Consensus 160 --~d~~~i~~~al~~--~~~~DvVIIDTAG-r~~~d~~lm~El~~l~~~~~pdevlLVvda~~ 217 (437)
T PRK00771 160 --KDAVEIAKEGLEK--FKKADVIIVDTAG-RHALEEDLIEEMKEIKEAVKPDEVLLVIDATI 217 (437)
T ss_pred --cCHHHHHHHHHHH--hhcCCEEEEECCC-cccchHHHHHHHHHHHHHhcccceeEEEeccc
Confidence 0111222222211 2345899999997 44444455555555543 35778889999987
No 225
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=96.49 E-value=0.0041 Score=74.27 Aligned_cols=144 Identities=19% Similarity=0.259 Sum_probs=87.2
Q ss_pred cHHHHHHHHHHHHhCCeEEEEecCCCchHHHHHHHHHHhcccCCCEEEEEcccHHHHHHHHHHHHHHhccccCCEEEEEE
Q 001722 324 IFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELGDKVGYAI 403 (1020)
Q Consensus 324 i~~~q~eil~~i~~~q~vII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~lA~qva~rva~e~~~~lG~~VGy~i 403 (1020)
+...|..++++++++...||.||+|+|||....-.++.......+.|+|..|..+++.++|..+.+ .|..| +
T Consensus 411 LN~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa~IVyhl~~~~~~~VLvcApSNiAVDqLaeKIh~-----tgLKV---v 482 (935)
T KOG1802|consen 411 LNASQSNAVKHVLQRPLSLIQGPPGTGKTVTSATIVYHLARQHAGPVLVCAPSNIAVDQLAEKIHK-----TGLKV---V 482 (935)
T ss_pred hchHHHHHHHHHHcCCceeeecCCCCCceehhHHHHHHHHHhcCCceEEEcccchhHHHHHHHHHh-----cCceE---e
Confidence 567899999999999999999999999998766666555444578999999999999999999843 23222 2
Q ss_pred eeeec--CCCCccEEEEchHHHHHHHhcCCCCCCccEEEEeCCCcCCCCccHHHHHHHHHHhh--cCCceEEEEeccC
Q 001722 404 RFEDV--TGPSTLIKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVAR--RRDFKLIVTSATL 477 (1020)
Q Consensus 404 r~e~~--~s~~t~I~~~T~g~LLr~ll~d~~L~~~s~IIIDEaHERs~~tD~ll~lLk~il~~--r~~lklIlmSATl 477 (1020)
|.-.+ ....+.+-|.+-..+++.+-. |.|..+ .=.=||..|.+..-|.-+..++..... -....||.++---
T Consensus 483 Rl~aksRE~~~S~vs~L~lh~~~~~~~~-pELq~l-~klkde~gelS~sD~~k~~~lk~~~e~ell~~AdVIccTcv~ 558 (935)
T KOG1802|consen 483 RLCAKSREDIESDVSFLSLHEQLRNMDK-PELQKL-LKLKDEGGELSSSDEKKYRKLKRAAEKELLNQADVICCTCVG 558 (935)
T ss_pred eeehhhhhhccCCccHHHHHHHHhccCc-HHHHHH-HhhhhhcccccchhhHHHHHHHHHHHHHHHhhcCEEEEeccc
Confidence 22211 112233444443333332111 111110 012367666666666555555554432 2244666665443
No 226
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.46 E-value=0.016 Score=68.42 Aligned_cols=122 Identities=23% Similarity=0.239 Sum_probs=69.0
Q ss_pred CeEEEEecCCCchHHHHHHHHHHhcccCCCEE--EEEcccHHHHHHHHHHHHHHhccccCCEEEEEEeeeecCCCCccEE
Q 001722 339 QVVVVVGETGSGKTTQLTQYLLEDGYTTNGIV--GCTQPRRVAAMSVAKRVSEEMDTELGDKVGYAIRFEDVTGPSTLIK 416 (1020)
Q Consensus 339 q~vII~gpTGSGKTtqi~q~Lle~~~~~~~~I--l~tqPrR~lA~qva~rva~e~~~~lG~~VGy~ir~e~~~s~~t~I~ 416 (1020)
.+++++|++||||||.+..++.......+.+| +.+=++|.+|....++++...+.+ + |. ....
T Consensus 100 ~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp----~-~~-----~~~~----- 164 (428)
T TIGR00959 100 TVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKVLGQQVGVP----V-FA-----LGKG----- 164 (428)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHHHHHHHHHHHhcCCc----e-Ee-----cCCC-----
Confidence 47889999999999998776554321223333 445578888877776666554422 1 10 0000
Q ss_pred EEchHHHHHHHhcCCCCCCccEEEEeCCCcCCCCccHHHHHHHHHHh-hcCCceEEEEeccC
Q 001722 417 YMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVA-RRRDFKLIVTSATL 477 (1020)
Q Consensus 417 ~~T~g~LLr~ll~d~~L~~~s~IIIDEaHERs~~tD~ll~lLk~il~-~r~~lklIlmSATl 477 (1020)
..+..+....+......+|++||||=+- |...-+.++..+..+.. ..|+-.+++++||.
T Consensus 165 -~~P~~i~~~al~~~~~~~~DvVIIDTaG-r~~~d~~l~~eL~~i~~~~~p~e~lLVvda~t 224 (428)
T TIGR00959 165 -QSPVEIARRALEYAKENGFDVVIVDTAG-RLQIDEELMEELAAIKEILNPDEILLVVDAMT 224 (428)
T ss_pred -CCHHHHHHHHHHHHHhcCCCEEEEeCCC-ccccCHHHHHHHHHHHHhhCCceEEEEEeccc
Confidence 0111222222211123568999999998 44444445555555443 24566677778876
No 227
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.46 E-value=0.024 Score=64.98 Aligned_cols=37 Identities=22% Similarity=0.236 Sum_probs=25.2
Q ss_pred hCCeEEEEecCCCchHHHHHHHHHHhcccCCCEEEEEc
Q 001722 337 ENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQ 374 (1020)
Q Consensus 337 ~~q~vII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tq 374 (1020)
.+.++++.|+||+|||+.+.. +.......+..|+++.
T Consensus 182 ~~~~Lll~G~~GtGKThLa~a-Ia~~l~~~g~~V~y~t 218 (329)
T PRK06835 182 NNENLLFYGNTGTGKTFLSNC-IAKELLDRGKSVIYRT 218 (329)
T ss_pred cCCcEEEECCCCCcHHHHHHH-HHHHHHHCCCeEEEEE
Confidence 468999999999999996543 3333334445666653
No 228
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=96.43 E-value=0.013 Score=74.46 Aligned_cols=46 Identities=22% Similarity=0.411 Sum_probs=27.9
Q ss_pred HhcCCCCCCccEEEEeCCCcCCCCccHHHHHHHHHHhhcCCceEEEEe
Q 001722 427 TLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTS 474 (1020)
Q Consensus 427 ll~d~~L~~~s~IIIDEaHERs~~tD~ll~lLk~il~~r~~lklIlmS 474 (1020)
+...+...+|.+|||||+|. ++.+-.-.|||.+-.-...+.+|+.+
T Consensus 112 ~~~~p~~~~~KV~IIDEad~--lt~~a~NaLLK~LEEpP~~~~fIl~t 157 (824)
T PRK07764 112 AFFAPAESRYKIFIIDEAHM--VTPQGFNALLKIVEEPPEHLKFIFAT 157 (824)
T ss_pred HHhchhcCCceEEEEechhh--cCHHHHHHHHHHHhCCCCCeEEEEEe
Confidence 33445667899999999994 34444445555543333455555544
No 229
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.42 E-value=0.02 Score=57.00 Aligned_cols=35 Identities=37% Similarity=0.405 Sum_probs=25.9
Q ss_pred eEEEEecCCCchHHHHHHHHHHhcccCCCEEEEEcc
Q 001722 340 VVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQP 375 (1020)
Q Consensus 340 ~vII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqP 375 (1020)
+++|+|++|+|||+.+.+++..... .++.++++..
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~-~~~~v~~~~~ 35 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIAT-KGGKVVYVDI 35 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHh-cCCEEEEEEC
Confidence 4789999999999998887766544 3566666543
No 230
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.41 E-value=0.0076 Score=71.70 Aligned_cols=47 Identities=23% Similarity=0.328 Sum_probs=29.1
Q ss_pred CCCCCCccEEEEeCCCcCCCCccHHHHHHHHHHhhcCCceEEEEeccCCHH
Q 001722 430 DSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTSATLNAQ 480 (1020)
Q Consensus 430 d~~L~~~s~IIIDEaHERs~~tD~ll~lLk~il~~r~~lklIlmSATld~~ 480 (1020)
.+.-..+.++|||||| .+..+..-.+|+.+-. |...++++-||-+..
T Consensus 116 ~p~~g~~KV~IIDEah--~Ls~~A~NALLKtLEE--Pp~~viFILaTte~~ 162 (484)
T PRK14956 116 APMGGKYKVYIIDEVH--MLTDQSFNALLKTLEE--PPAHIVFILATTEFH 162 (484)
T ss_pred hhhcCCCEEEEEechh--hcCHHHHHHHHHHhhc--CCCceEEEeecCChh
Confidence 3445678999999999 4555666666666532 334455544554433
No 231
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=96.35 E-value=0.019 Score=65.25 Aligned_cols=33 Identities=27% Similarity=0.427 Sum_probs=23.8
Q ss_pred HHHHHHHHhCC--eEEEEecCCCchHHHHHHHHHH
Q 001722 329 DELLQVIRENQ--VVVVVGETGSGKTTQLTQYLLE 361 (1020)
Q Consensus 329 ~eil~~i~~~q--~vII~gpTGSGKTtqi~q~Lle 361 (1020)
+.+...+..+. .+++.||+|+||||.+-.+..+
T Consensus 25 ~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~ 59 (337)
T PRK12402 25 ERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARE 59 (337)
T ss_pred HHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 33444555555 7999999999999988665443
No 232
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.30 E-value=0.021 Score=67.24 Aligned_cols=131 Identities=21% Similarity=0.270 Sum_probs=72.4
Q ss_pred CeEEEEecCCCchHHHHHHHHHHhcccCCCEEE--EEcccHHHHHHHHHHHHHHhccccCCEEEEEEeeeecCCCCccEE
Q 001722 339 QVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVG--CTQPRRVAAMSVAKRVSEEMDTELGDKVGYAIRFEDVTGPSTLIK 416 (1020)
Q Consensus 339 q~vII~gpTGSGKTtqi~q~Lle~~~~~~~~Il--~tqPrR~lA~qva~rva~e~~~~lG~~VGy~ir~e~~~s~~t~I~ 416 (1020)
.++.++|++|+||||.+........ ..+.+|+ .+=|.|.+|....+..++..+.+ + |... ...
T Consensus 101 ~vi~lvG~~GvGKTTtaaKLA~~l~-~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp----~-~~~~-----~~~---- 165 (429)
T TIGR01425 101 NVIMFVGLQGSGKTTTCTKLAYYYQ-RKGFKPCLVCADTFRAGAFDQLKQNATKARIP----F-YGSY-----TES---- 165 (429)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH-HCCCCEEEEcCcccchhHHHHHHHHhhccCCe----E-Eeec-----CCC----
Confidence 5788999999999998765543321 2233443 34577888877766665543322 1 1100 000
Q ss_pred EEchHHHHHHHhcCCCCCCccEEEEeCCCcCCCCccHHHHHHHHHHh-hcCCceEEEEeccC--CHHHHHHHhC
Q 001722 417 YMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVA-RRRDFKLIVTSATL--NAQKFSDFFG 487 (1020)
Q Consensus 417 ~~T~g~LLr~ll~d~~L~~~s~IIIDEaHERs~~tD~ll~lLk~il~-~r~~lklIlmSATl--d~~~f~~~f~ 487 (1020)
.+-.+....+....-..+++||||=+. |...-+-++.-+..+.. ..|+..+++++||. ++...++-|.
T Consensus 166 --dp~~i~~~~l~~~~~~~~DvViIDTaG-r~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a~~F~ 236 (429)
T TIGR01425 166 --DPVKIASEGVEKFKKENFDIIIVDTSG-RHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQAKAFK 236 (429)
T ss_pred --CHHHHHHHHHHHHHhCCCCEEEEECCC-CCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHHHHHH
Confidence 011111111110011468999999998 55444455565665543 35677889999998 3333444443
No 233
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=96.30 E-value=0.047 Score=67.84 Aligned_cols=120 Identities=23% Similarity=0.300 Sum_probs=72.9
Q ss_pred eEEEEecCCCchHHHHHHHHHHhcccC-CCEEEEEcccHHHHHHHHHHHHHHhccccCCE--EEEEEeeee--cCCCCcc
Q 001722 340 VVVVVGETGSGKTTQLTQYLLEDGYTT-NGIVGCTQPRRVAAMSVAKRVSEEMDTELGDK--VGYAIRFED--VTGPSTL 414 (1020)
Q Consensus 340 ~vII~gpTGSGKTtqi~q~Lle~~~~~-~~~Il~tqPrR~lA~qva~rva~e~~~~lG~~--VGy~ir~e~--~~s~~t~ 414 (1020)
.++|+|.-|=|||..+-..++-..... ...|+||.|+.+.+..+.+..-+-+. .+|-+ |.+....+. .......
T Consensus 233 ~~vlTAdRGRGKSA~lGi~~~~~~~~~~~~~iiVTAP~~~nv~~Lf~fa~~~l~-~lg~~~~v~~d~~g~~~~~~~~~~~ 311 (758)
T COG1444 233 ALVLTADRGRGKSAALGIALAAAARLAGSVRIIVTAPTPANVQTLFEFAGKGLE-FLGYKRKVAPDALGEIREVSGDGFR 311 (758)
T ss_pred eEEEEcCCCCcHhHHHhHHHHHHHHhcCCceEEEeCCCHHHHHHHHHHHHHhHH-HhCCccccccccccceeeecCCcee
Confidence 899999999999998765443222111 45899999999999888876544332 22211 111111111 1123345
Q ss_pred EEEEchHHHHHHHhcCCCCCCccEEEEeCCCcCCCCccHHHHHHHHHHhhcCCceEEEEeccCC
Q 001722 415 IKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTSATLN 478 (1020)
Q Consensus 415 I~~~T~g~LLr~ll~d~~L~~~s~IIIDEaHERs~~tD~ll~lLk~il~~r~~lklIlmSATld 478 (1020)
|.|..|.... + .-++||||||= .+..- +|..++.. .+.++||.|+.
T Consensus 312 i~y~~P~~a~-~--------~~DllvVDEAA--aIplp----lL~~l~~~---~~rv~~sTTIh 357 (758)
T COG1444 312 IEYVPPDDAQ-E--------EADLLVVDEAA--AIPLP----LLHKLLRR---FPRVLFSTTIH 357 (758)
T ss_pred EEeeCcchhc-c--------cCCEEEEehhh--cCChH----HHHHHHhh---cCceEEEeeec
Confidence 7787776543 1 15799999986 34333 44444433 35689999994
No 234
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.27 E-value=0.0088 Score=62.47 Aligned_cols=118 Identities=15% Similarity=0.253 Sum_probs=54.5
Q ss_pred HHHHhCCeEEEEecCCCchHHHHHHHHHHhcccCCCEEEEEcccHHHHHHHHHHHHHHhccccCCEEEEEEeeeecCCCC
Q 001722 333 QVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELGDKVGYAIRFEDVTGPS 412 (1020)
Q Consensus 333 ~~i~~~q~vII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~lA~qva~rva~e~~~~lG~~VGy~ir~e~~~s~~ 412 (1020)
+.+.+++++++.|+||+|||..+...+.+. ...+..++++. ...+ ...+..... ..
T Consensus 42 ~~~~~~~~l~l~G~~G~GKThLa~ai~~~~-~~~g~~v~f~~-~~~L----~~~l~~~~~-----------------~~- 97 (178)
T PF01695_consen 42 EFIENGENLILYGPPGTGKTHLAVAIANEA-IRKGYSVLFIT-ASDL----LDELKQSRS-----------------DG- 97 (178)
T ss_dssp -S-SC--EEEEEESTTSSHHHHHHHHHHHH-HHTT--EEEEE-HHHH----HHHHHCCHC-----------------CT-
T ss_pred CCcccCeEEEEEhhHhHHHHHHHHHHHHHh-ccCCcceeEee-cCce----ecccccccc-----------------cc-
Confidence 334578899999999999999865544433 23344566653 2222 222311000 00
Q ss_pred ccEEEEchHHHHHHHhcCCCCCCccEEEEeCCCcCCCCccHHHHHHHHHHhhc-CCceEEEEeccCCHHHHHHHhCC
Q 001722 413 TLIKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARR-RDFKLIVTSATLNAQKFSDFFGS 488 (1020)
Q Consensus 413 t~I~~~T~g~LLr~ll~d~~L~~~s~IIIDEaHERs~~tD~ll~lLk~il~~r-~~lklIlmSATld~~~f~~~f~~ 488 (1020)
+...+++. +.+++++||||+---.. ++.....+-.++..| ....+|+ |.-++.+.+.+.|++
T Consensus 98 ------~~~~~~~~------l~~~dlLilDDlG~~~~-~~~~~~~l~~ii~~R~~~~~tIi-TSN~~~~~l~~~~~d 160 (178)
T PF01695_consen 98 ------SYEELLKR------LKRVDLLILDDLGYEPL-SEWEAELLFEIIDERYERKPTII-TSNLSPSELEEVLGD 160 (178)
T ss_dssp ------THCHHHHH------HHTSSCEEEETCTSS----HHHHHCTHHHHHHHHHT-EEEE-EESS-HHHHHT----
T ss_pred ------chhhhcCc------cccccEecccccceeee-cccccccchhhhhHhhcccCeEe-eCCCchhhHhhcccc
Confidence 01122333 44679999999873222 222223333333222 2234555 445678888888875
No 235
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.22 E-value=0.048 Score=56.10 Aligned_cols=120 Identities=21% Similarity=0.257 Sum_probs=60.4
Q ss_pred eEEEEecCCCchHHHHHHHHHHhcccCCCEEEEE--cccHHHHHHHHHHHHHHhccccCCEEEEEEeeeecCCCCccEEE
Q 001722 340 VVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCT--QPRRVAAMSVAKRVSEEMDTELGDKVGYAIRFEDVTGPSTLIKY 417 (1020)
Q Consensus 340 ~vII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~t--qPrR~lA~qva~rva~e~~~~lG~~VGy~ir~e~~~s~~t~I~~ 417 (1020)
+++++|++|+||||.+..++.... ..+.+++++ -++|..+.......++..+ .. + .....+
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~-~~g~~v~~i~~D~~~~~~~~~l~~~~~~~~----~~----~--~~~~~~------ 64 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLK-KKGKKVLLVAADTYRPAAIEQLRVLGEQVG----VP----V--FEEGEG------ 64 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH-HCCCcEEEEEcCCCChHHHHHHHHhcccCC----eE----E--EecCCC------
Confidence 578999999999999766554332 223445443 3666554443333333222 11 1 111111
Q ss_pred EchHHHHHHHhcCCCCCCccEEEEeCCCcCCCCccHHHHHHHHHHh-hcCCceEEEEeccC
Q 001722 418 MTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVA-RRRDFKLIVTSATL 477 (1020)
Q Consensus 418 ~T~g~LLr~ll~d~~L~~~s~IIIDEaHERs~~tD~ll~lLk~il~-~r~~lklIlmSATl 477 (1020)
..+..++...+....-.++++||+|..+-...+.+ .+..+..+.. ..++-.+++++|+.
T Consensus 65 ~~~~~~~~~~~~~~~~~~~d~viiDt~g~~~~~~~-~l~~l~~l~~~~~~~~~~lVv~~~~ 124 (173)
T cd03115 65 KDPVSIAKRAIEHAREENFDVVIVDTAGRLQIDEN-LMEELKKIKRVVKPDEVLLVVDAMT 124 (173)
T ss_pred CCHHHHHHHHHHHHHhCCCCEEEEECcccchhhHH-HHHHHHHHHhhcCCCeEEEEEECCC
Confidence 01222222221111235788999999984344333 3344444433 23666777777765
No 236
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.22 E-value=0.015 Score=73.39 Aligned_cols=49 Identities=24% Similarity=0.439 Sum_probs=31.0
Q ss_pred CCCCCCccEEEEeCCCcCCCCccHHHHHHHHHHhhcCCceEEEEeccCCHHHH
Q 001722 430 DSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTSATLNAQKF 482 (1020)
Q Consensus 430 d~~L~~~s~IIIDEaHERs~~tD~ll~lLk~il~~r~~lklIlmSATld~~~f 482 (1020)
.+.-.++.+|||||||. +..+..-.+||.+-.-.+.+++|+. |-+..++
T Consensus 114 ~P~~gk~KViIIDEAh~--LT~eAqNALLKtLEEPP~~vrFILa--TTe~~kL 162 (944)
T PRK14949 114 RPSRGRFKVYLIDEVHM--LSRSSFNALLKTLEEPPEHVKFLLA--TTDPQKL 162 (944)
T ss_pred hhhcCCcEEEEEechHh--cCHHHHHHHHHHHhccCCCeEEEEE--CCCchhc
Confidence 34456789999999994 4566666666665443445566654 5554443
No 237
>PRK06893 DNA replication initiation factor; Validated
Probab=96.22 E-value=0.042 Score=59.63 Aligned_cols=48 Identities=13% Similarity=0.301 Sum_probs=28.9
Q ss_pred CCCccEEEEeCCCcCCCCc---cHHHHHHHHHHhhcCCceEEEEeccCCHHHH
Q 001722 433 LDKYRVIVMDEAHERSLST---DVLFGILKKVVARRRDFKLIVTSATLNAQKF 482 (1020)
Q Consensus 433 L~~~s~IIIDEaHERs~~t---D~ll~lLk~il~~r~~lklIlmSATld~~~f 482 (1020)
+.++++|||||+|.-..+. ..++.++...... ...+|++|++..+..+
T Consensus 89 ~~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~--~~~illits~~~p~~l 139 (229)
T PRK06893 89 LEQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQ--GKTLLLISADCSPHAL 139 (229)
T ss_pred cccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHc--CCcEEEEeCCCChHHc
Confidence 4577899999999533222 2455555554332 3456788887754433
No 238
>PRK08116 hypothetical protein; Validated
Probab=96.21 E-value=0.064 Score=59.77 Aligned_cols=36 Identities=19% Similarity=0.117 Sum_probs=23.6
Q ss_pred CCeEEEEecCCCchHHHHHHHHHHhcccCCCEEEEEc
Q 001722 338 NQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQ 374 (1020)
Q Consensus 338 ~q~vII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tq 374 (1020)
+..+++.|++|+|||..+..+ .......+..++++.
T Consensus 114 ~~gl~l~G~~GtGKThLa~ai-a~~l~~~~~~v~~~~ 149 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACI-ANELIEKGVPVIFVN 149 (268)
T ss_pred CceEEEECCCCCCHHHHHHHH-HHHHHHcCCeEEEEE
Confidence 446999999999999876543 333333345566653
No 239
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.18 E-value=0.021 Score=69.96 Aligned_cols=49 Identities=18% Similarity=0.398 Sum_probs=30.6
Q ss_pred HHHhcCCCCCCccEEEEeCCCcCCCCccHHHHHHHHHHhhcCCceEEEEec
Q 001722 425 RETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTSA 475 (1020)
Q Consensus 425 r~ll~d~~L~~~s~IIIDEaHERs~~tD~ll~lLk~il~~r~~lklIlmSA 475 (1020)
..+...+...++.++||||+|. ++....-.+||.+-.-.+++++|+.|-
T Consensus 114 e~~~~~P~~gr~KViIIDEah~--Ls~~AaNALLKTLEEPP~~v~FILaTt 162 (700)
T PRK12323 114 DKAVYAPTAGRFKVYMIDEVHM--LTNHAFNAMLKTLEEPPEHVKFILATT 162 (700)
T ss_pred HHHHhchhcCCceEEEEEChHh--cCHHHHHHHHHhhccCCCCceEEEEeC
Confidence 3333445567899999999994 445555566665433334566666543
No 240
>PRK08084 DNA replication initiation factor; Provisional
Probab=96.17 E-value=0.039 Score=60.11 Aligned_cols=35 Identities=17% Similarity=0.228 Sum_probs=23.7
Q ss_pred CCeEEEEecCCCchHHHHHHHHHHhcccCCCEEEEE
Q 001722 338 NQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCT 373 (1020)
Q Consensus 338 ~q~vII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~t 373 (1020)
+..++|+||+|||||+.+-.+..+.. ..+..+.++
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~~~-~~~~~v~y~ 79 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAELS-QRGRAVGYV 79 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH-hCCCeEEEE
Confidence 46899999999999998755444322 224455554
No 241
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.15 E-value=0.062 Score=59.42 Aligned_cols=117 Identities=22% Similarity=0.334 Sum_probs=67.9
Q ss_pred HHHHHhCCeEEEEecCCCchHHHHHHHHHHhcccCCCEEEEEcccHHHHHHHHHHHHHHhccccCCEEEEEEeeeecCCC
Q 001722 332 LQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELGDKVGYAIRFEDVTGP 411 (1020)
Q Consensus 332 l~~i~~~q~vII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~lA~qva~rva~e~~~~lG~~VGy~ir~e~~~s~ 411 (1020)
.+.+..+.++++.|++|+|||..+.....+.. ..+..|+++ +.-.++..+..-. .. |
T Consensus 99 ~~~~~~~~nl~l~G~~G~GKThLa~Ai~~~l~-~~g~sv~f~-~~~el~~~Lk~~~----~~--~--------------- 155 (254)
T COG1484 99 VEFFERGENLVLLGPPGVGKTHLAIAIGNELL-KAGISVLFI-TAPDLLSKLKAAF----DE--G--------------- 155 (254)
T ss_pred HHHhccCCcEEEECCCCCcHHHHHHHHHHHHH-HcCCeEEEE-EHHHHHHHHHHHH----hc--C---------------
Confidence 33444889999999999999998766555544 434455553 4444444433322 11 0
Q ss_pred CccEEEEchHHHHHHHhcCCCCCCccEEEEeCCCcCCCC---ccHHHHHHHHHHhhcCCceEEEEeccCCHHHHHHHhC
Q 001722 412 STLIKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLS---TDVLFGILKKVVARRRDFKLIVTSATLNAQKFSDFFG 487 (1020)
Q Consensus 412 ~t~I~~~T~g~LLr~ll~d~~L~~~s~IIIDEaHERs~~---tD~ll~lLk~il~~r~~lklIlmSATld~~~f~~~f~ 487 (1020)
...+.|++. +.+++++||||+--.... .+.++.++......+ .+ ++|.-.+...+...|+
T Consensus 156 ------~~~~~l~~~------l~~~dlLIiDDlG~~~~~~~~~~~~~q~I~~r~~~~---~~-~~tsN~~~~~~~~~~~ 218 (254)
T COG1484 156 ------RLEEKLLRE------LKKVDLLIIDDIGYEPFSQEEADLLFQLISRRYESR---SL-IITSNLSFGEWDELFG 218 (254)
T ss_pred ------chHHHHHHH------hhcCCEEEEecccCccCCHHHHHHHHHHHHHHHhhc---cc-eeecCCChHHHHhhcc
Confidence 112334433 568899999998843333 355666555554443 22 4555555666666555
No 242
>PHA02533 17 large terminase protein; Provisional
Probab=96.05 E-value=0.18 Score=61.53 Aligned_cols=156 Identities=18% Similarity=0.238 Sum_probs=93.5
Q ss_pred cCCCcHHHHHHHHHHHHhCCeEEEEecCCCchHHHHHHHHH-HhcccCCCEEEEEcccHHHHHHHHHHHHHHhccccC-C
Q 001722 320 QYLPIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLL-EDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELG-D 397 (1020)
Q Consensus 320 ~~LPi~~~q~eil~~i~~~q~vII~gpTGSGKTtqi~q~Ll-e~~~~~~~~Il~tqPrR~lA~qva~rva~e~~~~lG-~ 397 (1020)
..+++.++|..++..+..++..+|.-+=..|||+.+..+++ ......+..|+++.|++.-|..+..++......... .
T Consensus 56 ~Pf~L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~~~~~~~v~i~A~~~~QA~~vF~~ik~~ie~~P~l~ 135 (534)
T PHA02533 56 IKVQMRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVCFNKDKNVGILAHKASMAAEVLDRTKQAIELLPDFL 135 (534)
T ss_pred eecCCcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHhCHHHh
Confidence 45889999999999887778888999999999999875544 333445568999999999999998887643321000 0
Q ss_pred EEEE------EEeeeecCCCCccEEEEchHHHHHHHhcCCCCCCccEEEEeCCCcCCCCccHHHHHHHHHHhhcCCceEE
Q 001722 398 KVGY------AIRFEDVTGPSTLIKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLI 471 (1020)
Q Consensus 398 ~VGy------~ir~e~~~s~~t~I~~~T~g~LLr~ll~d~~L~~~s~IIIDEaHERs~~tD~ll~lLk~il~~r~~lklI 471 (1020)
..+. .+.+ ..++.|.+.|..- +. ..=.+++++|+||+|.-.-..+++-. +...+......+++
T Consensus 136 ~~~i~~~~~~~I~l----~NGS~I~~lss~~--~t----~rG~~~~~liiDE~a~~~~~~e~~~a-i~p~lasg~~~r~i 204 (534)
T PHA02533 136 QPGIVEWNKGSIEL----ENGSKIGAYASSP--DA----VRGNSFAMIYIDECAFIPNFIDFWLA-IQPVISSGRSSKII 204 (534)
T ss_pred hcceeecCccEEEe----CCCCEEEEEeCCC--Cc----cCCCCCceEEEeccccCCCHHHHHHH-HHHHHHcCCCceEE
Confidence 0111 1111 2344555554321 00 01124568999999953222233333 44444444445677
Q ss_pred EEeccCCHHHHHHHh
Q 001722 472 VTSATLNAQKFSDFF 486 (1020)
Q Consensus 472 lmSATld~~~f~~~f 486 (1020)
+.|.+-....|.+++
T Consensus 205 iiSTp~G~n~fye~~ 219 (534)
T PHA02533 205 ITSTPNGLNHFYDIW 219 (534)
T ss_pred EEECCCchhhHHHHH
Confidence 766665333355544
No 243
>PRK12377 putative replication protein; Provisional
Probab=96.05 E-value=0.11 Score=57.28 Aligned_cols=36 Identities=17% Similarity=0.066 Sum_probs=23.3
Q ss_pred hCCeEEEEecCCCchHHHHHHHHHHhcccCCCEEEEE
Q 001722 337 ENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCT 373 (1020)
Q Consensus 337 ~~q~vII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~t 373 (1020)
....+++.|++|+|||+.+...+... ...+..|+|+
T Consensus 100 ~~~~l~l~G~~GtGKThLa~AIa~~l-~~~g~~v~~i 135 (248)
T PRK12377 100 GCTNFVFSGKPGTGKNHLAAAIGNRL-LAKGRSVIVV 135 (248)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHH-HHcCCCeEEE
Confidence 34789999999999998765443332 2333445444
No 244
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.03 E-value=0.11 Score=58.93 Aligned_cols=113 Identities=12% Similarity=0.139 Sum_probs=59.9
Q ss_pred hCCeEEEEecCCCchHHHHHHHHHHhcccCCCEEE-EEcccHHHHHHHHHHHHHHhccccCCEEEEEEeeeecCCCCccE
Q 001722 337 ENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVG-CTQPRRVAAMSVAKRVSEEMDTELGDKVGYAIRFEDVTGPSTLI 415 (1020)
Q Consensus 337 ~~q~vII~gpTGSGKTtqi~q~Lle~~~~~~~~Il-~tqPrR~lA~qva~rva~e~~~~lG~~VGy~ir~e~~~s~~t~I 415 (1020)
.++.+++.|++|+|||..+...+.+.. ..+..+. +..| .++ ..+...++. +
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~-~~g~~v~~~~~~--~l~----~~lk~~~~~------------------~--- 206 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELA-KKGVSSTLLHFP--EFI----RELKNSISD------------------G--- 206 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH-HcCCCEEEEEHH--HHH----HHHHHHHhc------------------C---
Confidence 457899999999999998755444433 2233343 4445 222 222221110 0
Q ss_pred EEEchHHHHHHHhcCCCCCCccEEEEeCCCcCCCCccHHHHHHHHHHhhc-CCceEEEEeccCCHHHHHHHh
Q 001722 416 KYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARR-RDFKLIVTSATLNAQKFSDFF 486 (1020)
Q Consensus 416 ~~~T~g~LLr~ll~d~~L~~~s~IIIDEaHERs~~tD~ll~lLk~il~~r-~~lklIlmSATld~~~f~~~f 486 (1020)
+-..++.. +.++++|||||+.--.+.....-.+|-.++..| ..-+-+++|.-++.+.+.+.|
T Consensus 207 ---~~~~~l~~------l~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl~~~el~~~~ 269 (306)
T PRK08939 207 ---SVKEKIDA------VKEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNFDFDELEHHL 269 (306)
T ss_pred ---cHHHHHHH------hcCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHH
Confidence 11112222 568899999999843333222223444444433 122334455556677777776
No 245
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.02 E-value=0.027 Score=68.53 Aligned_cols=50 Identities=24% Similarity=0.379 Sum_probs=29.1
Q ss_pred HHHHHhcCCCCCCccEEEEeCCCcCCCCccHHHHHHHHHHhhcCCceEEEEe
Q 001722 423 LLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTS 474 (1020)
Q Consensus 423 LLr~ll~d~~L~~~s~IIIDEaHERs~~tD~ll~lLk~il~~r~~lklIlmS 474 (1020)
++..+...|...++.+|||||||. ++.+..-.+|+.+-.-.+...+|+.+
T Consensus 107 ii~~~~~~p~~g~~kViIIDEa~~--ls~~a~naLLK~LEepp~~v~fIL~T 156 (546)
T PRK14957 107 ILDNIQYMPSQGRYKVYLIDEVHM--LSKQSFNALLKTLEEPPEYVKFILAT 156 (546)
T ss_pred HHHHHHhhhhcCCcEEEEEechhh--ccHHHHHHHHHHHhcCCCCceEEEEE
Confidence 344444456677899999999994 33444444554443322345555544
No 246
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=96.02 E-value=0.0058 Score=59.09 Aligned_cols=21 Identities=29% Similarity=0.400 Sum_probs=16.8
Q ss_pred EEEEecCCCchHHHHHHHHHH
Q 001722 341 VVVVGETGSGKTTQLTQYLLE 361 (1020)
Q Consensus 341 vII~gpTGSGKTtqi~q~Lle 361 (1020)
++|.||+|+|||+.+-..+-.
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 689999999999988554443
No 247
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=96.01 E-value=0.02 Score=66.21 Aligned_cols=48 Identities=19% Similarity=0.268 Sum_probs=29.7
Q ss_pred HHhcCCCCCCccEEEEeCCCcCCCCccHHHHHHHHHHhhcCCceEEEEec
Q 001722 426 ETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTSA 475 (1020)
Q Consensus 426 ~ll~d~~L~~~s~IIIDEaHERs~~tD~ll~lLk~il~~r~~lklIlmSA 475 (1020)
.+...+....+.+|||||||. ++..-.-.+|+.+-.-.++..+|++|.
T Consensus 132 ~l~~~~~~g~~rVviIDeAd~--l~~~aanaLLk~LEEpp~~~~fiLit~ 179 (351)
T PRK09112 132 FLSQTSGDGNWRIVIIDPADD--MNRNAANAILKTLEEPPARALFILISH 179 (351)
T ss_pred HhhhccccCCceEEEEEchhh--cCHHHHHHHHHHHhcCCCCceEEEEEC
Confidence 333445567899999999994 445555556666544333455566553
No 248
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=96.00 E-value=0.023 Score=70.20 Aligned_cols=43 Identities=28% Similarity=0.478 Sum_probs=27.8
Q ss_pred CCCCCCccEEEEeCCCcCCCCccHHHHHHHHHHhhcCCceEEEEe
Q 001722 430 DSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTS 474 (1020)
Q Consensus 430 d~~L~~~s~IIIDEaHERs~~tD~ll~lLk~il~~r~~lklIlmS 474 (1020)
.+.+.++.+|||||+|. +.....-.+|+.+-...+...+|+.+
T Consensus 114 ~P~~gk~KVIIIDEad~--Ls~~A~NALLKtLEEPp~~v~fILaT 156 (709)
T PRK08691 114 APTAGKYKVYIIDEVHM--LSKSAFNAMLKTLEEPPEHVKFILAT 156 (709)
T ss_pred hhhhCCcEEEEEECccc--cCHHHHHHHHHHHHhCCCCcEEEEEe
Confidence 45677899999999994 44444445555554444556666654
No 249
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=95.99 E-value=0.015 Score=60.12 Aligned_cols=46 Identities=17% Similarity=0.150 Sum_probs=31.1
Q ss_pred eEEEEecCCCchHHHHHHHHHHhcccCCCEEEEEcccHHHHHHHHHHH
Q 001722 340 VVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRV 387 (1020)
Q Consensus 340 ~vII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~lA~qva~rv 387 (1020)
.++|.||+|+|||+...+++.+.. ..+..++++.. ...+.++.+++
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~-~~g~~v~~~s~-e~~~~~~~~~~ 46 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGL-ARGEPGLYVTL-EESPEELIENA 46 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH-HCCCcEEEEEC-CCCHHHHHHHH
Confidence 378999999999999999888765 33555665532 23344444444
No 250
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.96 E-value=0.019 Score=66.61 Aligned_cols=47 Identities=19% Similarity=0.361 Sum_probs=27.2
Q ss_pred HHhcCCCCCCccEEEEeCCCcCCCCccHHHHHHHHHHhhcCCceEEEEe
Q 001722 426 ETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTS 474 (1020)
Q Consensus 426 ~ll~d~~L~~~s~IIIDEaHERs~~tD~ll~lLk~il~~r~~lklIlmS 474 (1020)
.+...|...++.+|||||||.- ..+..-.+|+.+-...+..++|+.+
T Consensus 110 ~~~~~p~~~~~kviIIDEa~~l--~~~a~naLLk~lEe~~~~~~fIl~t 156 (363)
T PRK14961 110 NIYYSPSKSRFKVYLIDEVHML--SRHSFNALLKTLEEPPQHIKFILAT 156 (363)
T ss_pred HHhcCcccCCceEEEEEChhhc--CHHHHHHHHHHHhcCCCCeEEEEEc
Confidence 3334455678899999999943 3333334555543333445555543
No 251
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=95.96 E-value=0.032 Score=57.88 Aligned_cols=126 Identities=21% Similarity=0.245 Sum_probs=67.1
Q ss_pred HHhCCeEEEEecCCCchHHHHHHHHHHhcccCCCEEEEEcccHHHHHHHHHHHHHHhccccCCEEEEEEeeeecCCCCc-
Q 001722 335 IRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELGDKVGYAIRFEDVTGPST- 413 (1020)
Q Consensus 335 i~~~q~vII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~lA~qva~rva~e~~~~lG~~VGy~ir~e~~~s~~t- 413 (1020)
+..++.+.|.|++||||||.+-... -......|.|.+- -... ... ...+. ..++|........ +.+
T Consensus 25 i~~Ge~~~i~G~nGsGKStLl~~l~-G~~~~~~G~i~~~-g~~~-~~~-~~~~~--------~~i~~~~q~~~~~-~~tv 91 (178)
T cd03247 25 LKQGEKIALLGRSGSGKSTLLQLLT-GDLKPQQGEITLD-GVPV-SDL-EKALS--------SLISVLNQRPYLF-DTTL 91 (178)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHh-ccCCCCCCEEEEC-CEEH-HHH-HHHHH--------hhEEEEccCCeee-cccH
Confidence 3478999999999999999775433 2222234555442 1111 110 11111 1234422110000 011
Q ss_pred ---cEEEEchHHHHHHHhcCCCCCCccEEEEeCCCcCCCCcc---HHHHHHHHHHhhcCCceEEEEeccC
Q 001722 414 ---LIKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTD---VLFGILKKVVARRRDFKLIVTSATL 477 (1020)
Q Consensus 414 ---~I~~~T~g~LLr~ll~d~~L~~~s~IIIDEaHERs~~tD---~ll~lLk~il~~r~~lklIlmSATl 477 (1020)
.+...+.|+..+..+....+.+.+++|+||.= .+++.. .++.+++.+ .....+|+.|.-+
T Consensus 92 ~~~i~~~LS~G~~qrv~laral~~~p~~lllDEP~-~~LD~~~~~~l~~~l~~~---~~~~tii~~sh~~ 157 (178)
T cd03247 92 RNNLGRRFSGGERQRLALARILLQDAPIVLLDEPT-VGLDPITERQLLSLIFEV---LKDKTLIWITHHL 157 (178)
T ss_pred HHhhcccCCHHHHHHHHHHHHHhcCCCEEEEECCc-ccCCHHHHHHHHHHHHHH---cCCCEEEEEecCH
Confidence 14456677777666666667788999999976 455544 444455443 2345566666544
No 252
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=95.95 E-value=0.078 Score=64.13 Aligned_cols=29 Identities=24% Similarity=0.242 Sum_probs=21.5
Q ss_pred HHHHhCC---eEEEEecCCCchHHHHHHHHHH
Q 001722 333 QVIRENQ---VVVVVGETGSGKTTQLTQYLLE 361 (1020)
Q Consensus 333 ~~i~~~q---~vII~gpTGSGKTtqi~q~Lle 361 (1020)
.++..++ .++++||.|+||||.+-.+...
T Consensus 35 ~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~ 66 (507)
T PRK06645 35 YTILNDRLAGGYLLTGIRGVGKTTSARIIAKA 66 (507)
T ss_pred HHHHcCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 3455554 6899999999999987655443
No 253
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.94 E-value=0.051 Score=65.26 Aligned_cols=48 Identities=23% Similarity=0.347 Sum_probs=29.0
Q ss_pred HHHhcCCCCCCccEEEEeCCCcCCCCccHHHHHHHHHHhhcCCceEEEEe
Q 001722 425 RETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTS 474 (1020)
Q Consensus 425 r~ll~d~~L~~~s~IIIDEaHERs~~tD~ll~lLk~il~~r~~lklIlmS 474 (1020)
......|...++.++||||+|. +.....-.+++.+-.-.+...+|+.+
T Consensus 106 e~~~~~P~~~~~KVvIIDEah~--Ls~~A~NaLLK~LEePp~~v~fIlat 153 (491)
T PRK14964 106 ENSCYLPISSKFKVYIIDEVHM--LSNSAFNALLKTLEEPAPHVKFILAT 153 (491)
T ss_pred HHHHhccccCCceEEEEeChHh--CCHHHHHHHHHHHhCCCCCeEEEEEe
Confidence 3334456778999999999994 33444445555544333445555543
No 254
>PRK05642 DNA replication initiation factor; Validated
Probab=95.94 E-value=0.04 Score=60.02 Aligned_cols=35 Identities=11% Similarity=0.061 Sum_probs=22.7
Q ss_pred CeEEEEecCCCchHHHHHHHHHHhcccCCCEEEEEc
Q 001722 339 QVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQ 374 (1020)
Q Consensus 339 q~vII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tq 374 (1020)
..++|+|++|+|||..+-.+ .......+.+++|+.
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~-~~~~~~~~~~v~y~~ 80 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAA-CLRFEQRGEPAVYLP 80 (234)
T ss_pred CeEEEECCCCCCHHHHHHHH-HHHHHhCCCcEEEee
Confidence 57899999999999885443 332222344566653
No 255
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.92 E-value=0.022 Score=68.94 Aligned_cols=43 Identities=23% Similarity=0.416 Sum_probs=26.8
Q ss_pred CCCCCCccEEEEeCCCcCCCCccHHHHHHHHHHhhcCCceEEEEe
Q 001722 430 DSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTS 474 (1020)
Q Consensus 430 d~~L~~~s~IIIDEaHERs~~tD~ll~lLk~il~~r~~lklIlmS 474 (1020)
.|.-.++.++||||||. ++.+..-.+|+.+-.-.+..++|+.+
T Consensus 114 ~p~~~~~kV~iIDE~~~--ls~~a~naLLk~LEepp~~~~fIlat 156 (509)
T PRK14958 114 APTKGRFKVYLIDEVHM--LSGHSFNALLKTLEEPPSHVKFILAT 156 (509)
T ss_pred ccccCCcEEEEEEChHh--cCHHHHHHHHHHHhccCCCeEEEEEE
Confidence 45567899999999993 44455555665443333455555543
No 256
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=95.90 E-value=0.017 Score=71.37 Aligned_cols=53 Identities=23% Similarity=0.369 Sum_probs=31.5
Q ss_pred HHHhcCCCCCCccEEEEeCCCcCCCCccHHHHHHHHHHhhcCCceEEEEeccCCHHH
Q 001722 425 RETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTSATLNAQK 481 (1020)
Q Consensus 425 r~ll~d~~L~~~s~IIIDEaHERs~~tD~ll~lLk~il~~r~~lklIlmSATld~~~ 481 (1020)
..+...+.-..+.++||||||. ++.+..-.+||.+-.-.+..++|+. |-+..+
T Consensus 109 ~~~~~~p~~g~~KV~IIDEah~--Ls~~a~NALLKtLEEPp~~v~FIL~--Tt~~~k 161 (647)
T PRK07994 109 DNVQYAPARGRFKVYLIDEVHM--LSRHSFNALLKTLEEPPEHVKFLLA--TTDPQK 161 (647)
T ss_pred HHHHhhhhcCCCEEEEEechHh--CCHHHHHHHHHHHHcCCCCeEEEEe--cCCccc
Confidence 3333445567899999999993 4555566666654433334455554 444443
No 257
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.89 E-value=0.11 Score=61.38 Aligned_cols=321 Identities=18% Similarity=0.189 Sum_probs=174.8
Q ss_pred HHHcCCCcHHHHHHHHHHHHhCCeEEEEecCCCchHH-----HHHHHHHHhcc--------------------c------
Q 001722 317 EQRQYLPIFSVRDELLQVIRENQVVVVVGETGSGKTT-----QLTQYLLEDGY--------------------T------ 365 (1020)
Q Consensus 317 ~~R~~LPi~~~q~eil~~i~~~q~vII~gpTGSGKTt-----qi~q~Lle~~~--------------------~------ 365 (1020)
.+....|+.+.|.+++....+-++++. ||++-|.- .....++.+.+ .
T Consensus 210 ~~K~s~pltalQ~~L~~~m~~YrDl~y--~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~fr 287 (698)
T KOG2340|consen 210 DQKKSEPLTALQKELFKIMFNYRDLLY--PTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFR 287 (698)
T ss_pred cccccCcchHHHHHHHHHHHhhhhhcc--ccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhh
Confidence 356889999999999999999998765 44443331 12222222110 0
Q ss_pred ----CCCEEEEEcccHHHHHHHHHHHHHH-hccccCCE-EEEEEeeeec-------------------------CC----
Q 001722 366 ----TNGIVGCTQPRRVAAMSVAKRVSEE-MDTELGDK-VGYAIRFEDV-------------------------TG---- 410 (1020)
Q Consensus 366 ----~~~~Il~tqPrR~lA~qva~rva~e-~~~~lG~~-VGy~ir~e~~-------------------------~s---- 410 (1020)
...+|++++|+|..|-.+...+... .|..-|.. |--.-||+.. +.
T Consensus 288 DQG~tRpkVLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~Fr 367 (698)
T KOG2340|consen 288 DQGFTRPKVLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFR 367 (698)
T ss_pred hcCCCCceEEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhh
Confidence 0247999999999999998887666 34332211 1111112110 00
Q ss_pred ----------------CCccEEEEchHHHHHHHhcC--------CCCCCccEEEEeCCCc-CCCCccHHHHHHHHHHhhc
Q 001722 411 ----------------PSTLIKYMTDGVLLRETLKD--------SDLDKYRVIVMDEAHE-RSLSTDVLFGILKKVVARR 465 (1020)
Q Consensus 411 ----------------~~t~I~~~T~g~LLr~ll~d--------~~L~~~s~IIIDEaHE-Rs~~tD~ll~lLk~il~~r 465 (1020)
...+|++|+|=-| |.++.+ ..|+.+.++|||-||- -..+..-++.++..+-...
T Consensus 368 iGl~ftkKtikLys~fy~SDIlVaSPLGL-Rmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l~QNwEhl~~ifdHLn~~P 446 (698)
T KOG2340|consen 368 IGLAFTKKTIKLYSKFYKSDILVASPLGL-RMILGNTGDKKRDFDFLSSIELLIIDQADIMLMQNWEHLLHIFDHLNLQP 446 (698)
T ss_pred hhHHHHHHHHHHHhhhcccCeEEecchhh-hhhhcCCCcccccchhhhhhhhhhhhhHHHHHHhhHHHHHHHHHHhhcCc
Confidence 1678899998433 444442 2388999999999993 2334445555555442211
Q ss_pred C---C------------------ceEEEEeccCCHHHHHHHhC----C----CCeEeec------CcccceeeeecCCCc
Q 001722 466 R---D------------------FKLIVTSATLNAQKFSDFFG----S----VPIFHIP------GRTFPVNTLYSKTPC 510 (1020)
Q Consensus 466 ~---~------------------lklIlmSATld~~~f~~~f~----~----~pvi~i~------gr~~pV~i~y~~~~~ 510 (1020)
. + -+.+++|+-.++ .|..+|+ | +..-.++ .-.+|+...|..-.+
T Consensus 447 ~k~h~~DfSRVR~wyL~~qsr~~rQtl~Fs~y~~~-~~nS~fn~~c~N~~Gkv~~~~~~~~gsi~~v~~~l~Qvf~ri~~ 525 (698)
T KOG2340|consen 447 SKQHDVDFSRVRMWYLDGQSRYFRQTLLFSRYSHP-LFNSLFNQYCQNMAGKVKARNLQSGGSISNVGIPLCQVFQRIEV 525 (698)
T ss_pred ccccCCChhheehheeccHHHHHHHHHHHHhhccH-HHHHHHHHhhhhhcceeeeccccCCCchhhccchhhhhhhheec
Confidence 1 1 134444444332 2223332 1 1111111 112333333322111
Q ss_pred ------hhH-HHHHHHHHHHHhhcCCCCCEEEEcCCHHHHHHHHHHHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHH
Q 001722 511 ------EDY-VEAAVKQAMTIHITSPPGDILIFMTGQDEIEAACFALKERMEQLISSTTREVPELLILPIYSQLPADLQA 583 (1020)
Q Consensus 511 ------~dy-l~~av~~~l~i~~~~~~g~ILVFl~g~~eie~l~~~L~e~l~~l~~~~~~~~~~l~vl~lhs~L~~~eq~ 583 (1020)
.|+ ..--+..++-.........|||+.|+.=+--.+-..+.+.. ..+.-+.-|+.-..-.
T Consensus 526 ~si~~~~D~RFkyFv~~ImPq~~k~t~s~~LiyIPSYfDFVRvRNy~K~e~-----------i~F~~i~EYssk~~vs-- 592 (698)
T KOG2340|consen 526 KSIIETPDARFKYFVDKIMPQLIKRTESGILIYIPSYFDFVRVRNYMKKEE-----------ISFVMINEYSSKSKVS-- 592 (698)
T ss_pred cCcccCchHHHHHHHHhhchhhcccccCceEEEecchhhHHHHHHHhhhhh-----------cchHHHhhhhhHhhhh--
Confidence 111 11122223322222334679999999988877766665431 0111111233322222
Q ss_pred HHHHHhcCCCeEEEEecchhh--ccCCCCCeeEEEEcCCccceeccCCCCcccccccccCHHHHHHHhcccCCCCC----
Q 001722 584 KIFEKAKEGTRKCIVATNIAE--TSLTVDGIFYVIDTGYGKMKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTGP---- 657 (1020)
Q Consensus 584 ~I~~~f~~g~rkVIVATniaE--tGItIp~V~~VID~G~~K~~~yd~~~g~~~L~~~piS~as~~QRaGRAGR~g~---- 657 (1020)
+.-+.|-.|...|++-|--+- +--+|.||+-||- |-| ...|.--+..+.+.+|+--.|.
T Consensus 593 RAR~lF~qgr~~vlLyTER~hffrR~~ikGVk~vVf--------Yqp-------P~~P~FYsEiinm~~k~~~~gn~d~d 657 (698)
T KOG2340|consen 593 RARELFFQGRKSVLLYTERAHFFRRYHIKGVKNVVF--------YQP-------PNNPHFYSEIINMSDKTTSQGNTDLD 657 (698)
T ss_pred HHHHHHHhcCceEEEEehhhhhhhhheecceeeEEE--------ecC-------CCCcHHHHHHHhhhhhhhccCCcccc
Confidence 333557788999999997543 5678999999995 432 3346666788888888854442
Q ss_pred -CEEEEccChhhH
Q 001722 658 -GTCYRLYTESAY 669 (1020)
Q Consensus 658 -G~cyrLyt~~~~ 669 (1020)
-.|-.|||+-+-
T Consensus 658 ~~t~~ilytKyD~ 670 (698)
T KOG2340|consen 658 IFTVRILYTKYDR 670 (698)
T ss_pred ceEEEEEeechhh
Confidence 479999998654
No 258
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=95.87 E-value=0.026 Score=63.30 Aligned_cols=119 Identities=15% Similarity=0.168 Sum_probs=67.4
Q ss_pred CeEEEEecCCCchHHHHHHHHHHhcccCC-----CEEEEE-cccHHHHHHHHHHHHHHhccccCCEEEEEEeeeecCCCC
Q 001722 339 QVVVVVGETGSGKTTQLTQYLLEDGYTTN-----GIVGCT-QPRRVAAMSVAKRVSEEMDTELGDKVGYAIRFEDVTGPS 412 (1020)
Q Consensus 339 q~vII~gpTGSGKTtqi~q~Lle~~~~~~-----~~Il~t-qPrR~lA~qva~rva~e~~~~lG~~VGy~ir~e~~~s~~ 412 (1020)
.+++|+|+||.|||+.+-.|.-.+..... ..|+++ .|...-....+..+-..++......- . .
T Consensus 62 p~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~~--------~---~ 130 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRPRD--------R---V 130 (302)
T ss_pred CceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccCCCC--------C---H
Confidence 57999999999999999888766533211 134444 56666666667677666665432110 0 0
Q ss_pred ccEEEEchHHHHHHHhcCCCCCCccEEEEeCCCc--CC--CCccHHHHHHHHHHhhcCCceEEEEeccCC
Q 001722 413 TLIKYMTDGVLLRETLKDSDLDKYRVIVMDEAHE--RS--LSTDVLFGILKKVVARRRDFKLIVTSATLN 478 (1020)
Q Consensus 413 t~I~~~T~g~LLr~ll~d~~L~~~s~IIIDEaHE--Rs--~~tD~ll~lLk~il~~r~~lklIlmSATld 478 (1020)
.......- .+++. -++.+|||||+|. .+ ...-..+..||.+... -.+.+|+. .|.+
T Consensus 131 ~~~~~~~~-~llr~-------~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~Ne-L~ipiV~v-Gt~~ 190 (302)
T PF05621_consen 131 AKLEQQVL-RLLRR-------LGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNE-LQIPIVGV-GTRE 190 (302)
T ss_pred HHHHHHHH-HHHHH-------cCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhc-cCCCeEEe-ccHH
Confidence 00000000 12222 2678999999995 22 2223567777777433 24555654 4553
No 259
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=95.87 E-value=0.023 Score=71.11 Aligned_cols=88 Identities=18% Similarity=0.137 Sum_probs=65.6
Q ss_pred CeEEEEecCCCCHHHHHHHHHHhc---CCCeEEEEecchhhccCCCCCeeEEEEcCCccceeccCCCCcccccccccCHH
Q 001722 567 ELLILPIYSQLPADLQAKIFEKAK---EGTRKCIVATNIAETSLTVDGIFYVIDTGYGKMKVYNPKMGMDALQVFPVSRA 643 (1020)
Q Consensus 567 ~l~vl~lhs~L~~~eq~~I~~~f~---~g~rkVIVATniaEtGItIp~V~~VID~G~~K~~~yd~~~g~~~L~~~piS~a 643 (1020)
.+..+-+.|....++|-..++.|. ......|++|-....|+|+.-.+.||- ||+. -.+-
T Consensus 750 ~~kYlRLDG~TK~~eRg~ll~~FN~Pds~yf~FllstragglglNlQtadtvii--------fdsd----------wnp~ 811 (1157)
T KOG0386|consen 750 EYKYLRLDGQTKVEERGDLLEIFNAPDSPYFIFLLSTRAGGLGLNLQTADTVII--------FDSD----------WNPH 811 (1157)
T ss_pred hhheeeecCCcchhhHHHHHHHhcCCCCceeeeeeeecccccccchhhcceEEE--------ecCC----------CCch
Confidence 556677888888998887777774 345788999999999999998887773 6632 2344
Q ss_pred HHHHHhcccCCCC---CCEEEEccChhhHhhc
Q 001722 644 AADQRAGRAGRTG---PGTCYRLYTESAYLNE 672 (1020)
Q Consensus 644 s~~QRaGRAGR~g---~G~cyrLyt~~~~~~~ 672 (1020)
...|+.-||-|.| .-.++||.+-..+++.
T Consensus 812 ~d~qaqdrahrigq~~evRv~rl~tv~sveE~ 843 (1157)
T KOG0386|consen 812 QDLQAQDRAHRIGQKKEVRVLRLITVNSVEEK 843 (1157)
T ss_pred hHHHHHHHHHHhhchhheeeeeeehhhHHHHH
Confidence 5677777777776 4678899887776543
No 260
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.87 E-value=0.052 Score=66.65 Aligned_cols=47 Identities=23% Similarity=0.401 Sum_probs=29.1
Q ss_pred HHhcCCCCCCccEEEEeCCCcCCCCccHHHHHHHHHHhhcCCceEEEEe
Q 001722 426 ETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTS 474 (1020)
Q Consensus 426 ~ll~d~~L~~~s~IIIDEaHERs~~tD~ll~lLk~il~~r~~lklIlmS 474 (1020)
.+...|....+.+|||||||. +..+..-.+|+.+-.-.+.+.+|+.+
T Consensus 109 ~~~~~P~~~~~KVvIIDEah~--Lt~~A~NALLK~LEEpp~~~~fIL~t 155 (584)
T PRK14952 109 RAFYAPAQSRYRIFIVDEAHM--VTTAGFNALLKIVEEPPEHLIFIFAT 155 (584)
T ss_pred HHHhhhhcCCceEEEEECCCc--CCHHHHHHHHHHHhcCCCCeEEEEEe
Confidence 344456678999999999994 44555555555554333345555544
No 261
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=95.84 E-value=0.034 Score=63.23 Aligned_cols=60 Identities=22% Similarity=0.217 Sum_probs=46.3
Q ss_pred HHHcCCCcHHHHHHHHHHHHhCC--eEEEEecCCCchHHHHHHHHHHhcccC--CCEEEEEccc
Q 001722 317 EQRQYLPIFSVRDELLQVIRENQ--VVVVVGETGSGKTTQLTQYLLEDGYTT--NGIVGCTQPR 376 (1020)
Q Consensus 317 ~~R~~LPi~~~q~eil~~i~~~q--~vII~gpTGSGKTtqi~q~Lle~~~~~--~~~Il~tqPr 376 (1020)
+.-.--|....|.-+++++.... .|.+.|.-|||||..++..-++..+.. ..+|+++-|+
T Consensus 222 ~vwGi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~ 285 (436)
T COG1875 222 EVWGIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPT 285 (436)
T ss_pred hhhccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCC
Confidence 44566788899999999998764 578899999999998777666654432 3589998885
No 262
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=95.79 E-value=0.087 Score=59.62 Aligned_cols=39 Identities=18% Similarity=0.234 Sum_probs=22.8
Q ss_pred CCccEEEEeCCCcCCCCccHHHHHHHHHHhhc-CCceEEEEe
Q 001722 434 DKYRVIVMDEAHERSLSTDVLFGILKKVVARR-RDFKLIVTS 474 (1020)
Q Consensus 434 ~~~s~IIIDEaHERs~~tD~ll~lLk~il~~r-~~lklIlmS 474 (1020)
....+|||||+|.- ...-....|+.++... .+.++|+.+
T Consensus 99 ~~~~vliiDe~d~l--~~~~~~~~L~~~le~~~~~~~~Ilt~ 138 (316)
T PHA02544 99 GGGKVIIIDEFDRL--GLADAQRHLRSFMEAYSKNCSFIITA 138 (316)
T ss_pred CCCeEEEEECcccc--cCHHHHHHHHHHHHhcCCCceEEEEc
Confidence 46789999999943 1222344555555543 345555544
No 263
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.79 E-value=0.034 Score=58.04 Aligned_cols=109 Identities=20% Similarity=0.286 Sum_probs=63.5
Q ss_pred HHHhCCeEEEEecCCCchHHHHHHHHHHhcccCCCEEEEEcccHHHHHHHHHHHHHHhccccCCEEEEEEeeeecCCCCc
Q 001722 334 VIRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELGDKVGYAIRFEDVTGPST 413 (1020)
Q Consensus 334 ~i~~~q~vII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~lA~qva~rva~e~~~~lG~~VGy~ir~e~~~s~~t 413 (1020)
.+..+..+.|+||+||||||.+-. |.-......|.|.+- |..++|.... .
T Consensus 21 ~i~~Ge~~~l~G~nGsGKSTLl~~-l~Gl~~p~~G~i~~~----------------------g~~i~~~~q~--~----- 70 (177)
T cd03222 21 VVKEGEVIGIVGPNGTGKTTAVKI-LAGQLIPNGDNDEWD----------------------GITPVYKPQY--I----- 70 (177)
T ss_pred EECCCCEEEEECCCCChHHHHHHH-HHcCCCCCCcEEEEC----------------------CEEEEEEccc--C-----
Confidence 456789999999999999998754 322222234555441 1124442110 0
Q ss_pred cEEEEchHHHHHHHhcCCCCCCccEEEEeCCCcCCCCcc---HHHHHHHHHHhhcCCceEEEEeccC
Q 001722 414 LIKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTD---VLFGILKKVVARRRDFKLIVTSATL 477 (1020)
Q Consensus 414 ~I~~~T~g~LLr~ll~d~~L~~~s~IIIDEaHERs~~tD---~ll~lLk~il~~r~~lklIlmSATl 477 (1020)
.++.|+..+..+....+.+.+++|+||-- .+++.. .+..+++.+... ...-+|+.|..+
T Consensus 71 ---~LSgGq~qrv~laral~~~p~lllLDEPt-s~LD~~~~~~l~~~l~~~~~~-~~~tiiivsH~~ 132 (177)
T cd03222 71 ---DLSGGELQRVAIAAALLRNATFYLFDEPS-AYLDIEQRLNAARAIRRLSEE-GKKTALVVEHDL 132 (177)
T ss_pred ---CCCHHHHHHHHHHHHHhcCCCEEEEECCc-ccCCHHHHHHHHHHHHHHHHc-CCCEEEEEECCH
Confidence 06777766665555556778999999976 455544 344444444322 224566666654
No 264
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.77 E-value=0.027 Score=57.03 Aligned_cols=116 Identities=21% Similarity=0.339 Sum_probs=60.6
Q ss_pred HHhCCeEEEEecCCCchHHHHHHHHHHhcccCCCEEEEEcccHHHHHHHHHHHHHHhccccCCEEEEEEeeeecCCCCcc
Q 001722 335 IRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELGDKVGYAIRFEDVTGPSTL 414 (1020)
Q Consensus 335 i~~~q~vII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~lA~qva~rva~e~~~~lG~~VGy~ir~e~~~s~~t~ 414 (1020)
+..++.+.|+|++||||||.+-..... .....+.|.+- ....... ...++ ...++|...
T Consensus 22 i~~g~~~~i~G~nGsGKStll~~l~g~-~~~~~G~i~~~-~~~~~~~-~~~~~--------~~~i~~~~q---------- 80 (157)
T cd00267 22 LKAGEIVALVGPNGSGKSTLLRAIAGL-LKPTSGEILID-GKDIAKL-PLEEL--------RRRIGYVPQ---------- 80 (157)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC-CCCCccEEEEC-CEEcccC-CHHHH--------HhceEEEee----------
Confidence 357899999999999999976543222 11123444321 1100000 00011 112344322
Q ss_pred EEEEchHHHHHHHhcCCCCCCccEEEEeCCCcCCCCccH---HHHHHHHHHhhcCCceEEEEeccC
Q 001722 415 IKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDV---LFGILKKVVARRRDFKLIVTSATL 477 (1020)
Q Consensus 415 I~~~T~g~LLr~ll~d~~L~~~s~IIIDEaHERs~~tD~---ll~lLk~il~~r~~lklIlmSATl 477 (1020)
.+.|+..+..+......+..++|+||.- .+++... +..+++.+.. ....+|+.|..+
T Consensus 81 ---lS~G~~~r~~l~~~l~~~~~i~ilDEp~-~~lD~~~~~~l~~~l~~~~~--~~~tii~~sh~~ 140 (157)
T cd00267 81 ---LSGGQRQRVALARALLLNPDLLLLDEPT-SGLDPASRERLLELLRELAE--EGRTVIIVTHDP 140 (157)
T ss_pred ---CCHHHHHHHHHHHHHhcCCCEEEEeCCC-cCCCHHHHHHHHHHHHHHHH--CCCEEEEEeCCH
Confidence 6677766655444445667999999987 4565543 3334443322 134566655544
No 265
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=95.75 E-value=0.043 Score=61.61 Aligned_cols=36 Identities=31% Similarity=0.413 Sum_probs=23.4
Q ss_pred CCeEEEEecCCCchHHHH---HHHHHHhcccCCCEEEEE
Q 001722 338 NQVVVVVGETGSGKTTQL---TQYLLEDGYTTNGIVGCT 373 (1020)
Q Consensus 338 ~q~vII~gpTGSGKTtqi---~q~Lle~~~~~~~~Il~t 373 (1020)
+-.+++.||+|||||+.+ ...+...++...+.++.+
T Consensus 58 ~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v 96 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSV 96 (284)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEe
Confidence 457999999999999976 344444444333344443
No 266
>CHL00181 cbbX CbbX; Provisional
Probab=95.71 E-value=0.051 Score=61.14 Aligned_cols=21 Identities=29% Similarity=0.392 Sum_probs=17.3
Q ss_pred CCeEEEEecCCCchHHHHHHH
Q 001722 338 NQVVVVVGETGSGKTTQLTQY 358 (1020)
Q Consensus 338 ~q~vII~gpTGSGKTtqi~q~ 358 (1020)
+-++++.||+|+|||+.+-.+
T Consensus 59 ~~~ill~G~pGtGKT~lAr~l 79 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKM 79 (287)
T ss_pred CceEEEECCCCCCHHHHHHHH
Confidence 456899999999999986544
No 267
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=95.71 E-value=0.024 Score=62.80 Aligned_cols=34 Identities=26% Similarity=0.354 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHhCCeEEEEecCCCchHHHHHHHH
Q 001722 326 SVRDELLQVIRENQVVVVVGETGSGKTTQLTQYL 359 (1020)
Q Consensus 326 ~~q~eil~~i~~~q~vII~gpTGSGKTtqi~q~L 359 (1020)
...+.++..+..+..+++.||+|+|||+.+-...
T Consensus 9 ~l~~~~l~~l~~g~~vLL~G~~GtGKT~lA~~la 42 (262)
T TIGR02640 9 RVTSRALRYLKSGYPVHLRGPAGTGKTTLAMHVA 42 (262)
T ss_pred HHHHHHHHHHhcCCeEEEEcCCCCCHHHHHHHHH
Confidence 3456678888999999999999999999886544
No 268
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=95.70 E-value=0.073 Score=60.21 Aligned_cols=131 Identities=24% Similarity=0.261 Sum_probs=79.2
Q ss_pred CeEEEEecCCCchHHHHHHHHHHhcccCCCEEEEE--cccHHHHHHHHHHHHHHhccccCCEEEEEEeeeecCCCCccEE
Q 001722 339 QVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCT--QPRRVAAMSVAKRVSEEMDTELGDKVGYAIRFEDVTGPSTLIK 416 (1020)
Q Consensus 339 q~vII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~t--qPrR~lA~qva~rva~e~~~~lG~~VGy~ir~e~~~s~~t~I~ 416 (1020)
-+++++|-.|+||||.+....... ...+.+|++. =.-|++|+.+-+.+++..|+.+ |... ..+..+-+.
T Consensus 140 ~Vil~vGVNG~GKTTTIaKLA~~l-~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~v-------I~~~-~G~DpAaVa 210 (340)
T COG0552 140 FVILFVGVNGVGKTTTIAKLAKYL-KQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPV-------ISGK-EGADPAAVA 210 (340)
T ss_pred EEEEEEecCCCchHhHHHHHHHHH-HHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeE-------EccC-CCCCcHHHH
Confidence 367889999999999976643332 2334455543 3569999988888877655432 1211 111112222
Q ss_pred EEchHHHHHHHhcCCCCCCccEEEEeCCCcCCCCccHHHHHHHHHHhh-cCCc------eEEEEeccC--CHHHHHHHhC
Q 001722 417 YMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVAR-RRDF------KLIVTSATL--NAQKFSDFFG 487 (1020)
Q Consensus 417 ~~T~g~LLr~ll~d~~L~~~s~IIIDEaHERs~~tD~ll~lLk~il~~-r~~l------klIlmSATl--d~~~f~~~f~ 487 (1020)
|-. .....-.+|++||+|=|- |..+-.-|+.-|+++.+- .++. .++++=||. |+-.-++.|.
T Consensus 211 fDA--------i~~Akar~~DvvliDTAG-RLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QAk~F~ 281 (340)
T COG0552 211 FDA--------IQAAKARGIDVVLIDTAG-RLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQAKIFN 281 (340)
T ss_pred HHH--------HHHHHHcCCCEEEEeCcc-cccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHHHHHHH
Confidence 211 111235689999999999 777777788888777652 2232 566668998 4333334443
No 269
>PRK06921 hypothetical protein; Provisional
Probab=95.69 E-value=0.13 Score=57.33 Aligned_cols=37 Identities=24% Similarity=0.216 Sum_probs=25.1
Q ss_pred hCCeEEEEecCCCchHHHHHHHHHHhcccC-CCEEEEEc
Q 001722 337 ENQVVVVVGETGSGKTTQLTQYLLEDGYTT-NGIVGCTQ 374 (1020)
Q Consensus 337 ~~q~vII~gpTGSGKTtqi~q~Lle~~~~~-~~~Il~tq 374 (1020)
.+..+++.|+||+|||+.+..++. ..... +..|+++.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~-~l~~~~g~~v~y~~ 153 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAAN-ELMRKKGVPVLYFP 153 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHH-HHhhhcCceEEEEE
Confidence 367899999999999987754433 33333 44566654
No 270
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=95.67 E-value=0.061 Score=56.26 Aligned_cols=32 Identities=16% Similarity=0.258 Sum_probs=23.3
Q ss_pred HHHHHHHhC---CeEEEEecCCCchHHHHHHHHHH
Q 001722 330 ELLQVIREN---QVVVVVGETGSGKTTQLTQYLLE 361 (1020)
Q Consensus 330 eil~~i~~~---q~vII~gpTGSGKTtqi~q~Lle 361 (1020)
.+.+.+.++ ..+++.||+|+|||+.+-.+...
T Consensus 3 ~l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~ 37 (188)
T TIGR00678 3 QLKRALEKGRLAHAYLFAGPEGVGKELLALALAKA 37 (188)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 355666666 35889999999999987655433
No 271
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=95.66 E-value=0.055 Score=63.17 Aligned_cols=23 Identities=35% Similarity=0.546 Sum_probs=19.0
Q ss_pred CeEEEEecCCCchHHHHHHHHHH
Q 001722 339 QVVVVVGETGSGKTTQLTQYLLE 361 (1020)
Q Consensus 339 q~vII~gpTGSGKTtqi~q~Lle 361 (1020)
.+++|+||+|+|||+.+-..+-+
T Consensus 56 ~~~lI~G~~GtGKT~l~~~v~~~ 78 (394)
T PRK00411 56 LNVLIYGPPGTGKTTTVKKVFEE 78 (394)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 67999999999999987665543
No 272
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.66 E-value=0.037 Score=55.65 Aligned_cols=102 Identities=25% Similarity=0.333 Sum_probs=60.0
Q ss_pred HHhCCeEEEEecCCCchHHHHHHHHHHhcccCCCEEEEEcccHHHHHHHHHHHHHHhccccCCEEEEEEeeeecCCCCcc
Q 001722 335 IRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELGDKVGYAIRFEDVTGPSTL 414 (1020)
Q Consensus 335 i~~~q~vII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~lA~qva~rva~e~~~~lG~~VGy~ir~e~~~s~~t~ 414 (1020)
+..++.+.|.|++||||||.+-... -......|.|.+- .. ..++|...
T Consensus 23 ~~~Ge~~~i~G~nGsGKStLl~~l~-G~~~~~~G~i~~~-~~--------------------~~i~~~~~---------- 70 (144)
T cd03221 23 INPGDRIGLVGRNGAGKSTLLKLIA-GELEPDEGIVTWG-ST--------------------VKIGYFEQ---------- 70 (144)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHc-CCCCCCceEEEEC-Ce--------------------EEEEEEcc----------
Confidence 3578999999999999999874432 2111223444331 10 13444221
Q ss_pred EEEEchHHHHHHHhcCCCCCCccEEEEeCCCcCCCCccH---HHHHHHHHHhhcCCceEEEEeccC
Q 001722 415 IKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDV---LFGILKKVVARRRDFKLIVTSATL 477 (1020)
Q Consensus 415 I~~~T~g~LLr~ll~d~~L~~~s~IIIDEaHERs~~tD~---ll~lLk~il~~r~~lklIlmSATl 477 (1020)
.+.|+..+..+....+.+..++|+||.- .+++.+. +..+++.+ ...+|+.|..+
T Consensus 71 ---lS~G~~~rv~laral~~~p~illlDEP~-~~LD~~~~~~l~~~l~~~-----~~til~~th~~ 127 (144)
T cd03221 71 ---LSGGEKMRLALAKLLLENPNLLLLDEPT-NHLDLESIEALEEALKEY-----PGTVILVSHDR 127 (144)
T ss_pred ---CCHHHHHHHHHHHHHhcCCCEEEEeCCc-cCCCHHHHHHHHHHHHHc-----CCEEEEEECCH
Confidence 6778777666655567788999999976 4555543 33444432 23455555443
No 273
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=95.65 E-value=0.072 Score=55.82 Aligned_cols=25 Identities=36% Similarity=0.577 Sum_probs=21.2
Q ss_pred HHHHhCCeEEEEecCCCchHHHHHH
Q 001722 333 QVIRENQVVVVVGETGSGKTTQLTQ 357 (1020)
Q Consensus 333 ~~i~~~q~vII~gpTGSGKTtqi~q 357 (1020)
..+..+.+++|+|||||||||.+-.
T Consensus 20 ~~v~~g~~i~I~G~tGSGKTTll~a 44 (186)
T cd01130 20 LAVEARKNILISGGTGSGKTTLLNA 44 (186)
T ss_pred HHHhCCCEEEEECCCCCCHHHHHHH
Confidence 4567789999999999999998744
No 274
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.60 E-value=0.058 Score=65.72 Aligned_cols=49 Identities=20% Similarity=0.360 Sum_probs=29.4
Q ss_pred HHHHhcCCCCCCccEEEEeCCCcCCCCccHHHHHHHHHHhhcCCceEEEEe
Q 001722 424 LRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTS 474 (1020)
Q Consensus 424 Lr~ll~d~~L~~~s~IIIDEaHERs~~tD~ll~lLk~il~~r~~lklIlmS 474 (1020)
+..+...|...++.++||||+|.- .....-.+|+.+-...+...+|+.+
T Consensus 108 ~~~~~~~p~~~~~kVvIIDEad~l--s~~a~naLLK~LEepp~~~~fIL~t 156 (527)
T PRK14969 108 LDNAQYAPTRGRFKVYIIDEVHML--SKSAFNAMLKTLEEPPEHVKFILAT 156 (527)
T ss_pred HHHHhhCcccCCceEEEEcCcccC--CHHHHHHHHHHHhCCCCCEEEEEEe
Confidence 333444566788999999999943 3333445555544333455566544
No 275
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.59 E-value=0.033 Score=68.45 Aligned_cols=32 Identities=22% Similarity=0.250 Sum_probs=22.7
Q ss_pred HHHHHHHhCC---eEEEEecCCCchHHHHHHHHHH
Q 001722 330 ELLQVIRENQ---VVVVVGETGSGKTTQLTQYLLE 361 (1020)
Q Consensus 330 eil~~i~~~q---~vII~gpTGSGKTtqi~q~Lle 361 (1020)
.+..++..++ .+|++||.|+||||.+-.+...
T Consensus 26 ~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~ 60 (702)
T PRK14960 26 ALSSALERGRLHHAYLFTGTRGVGKTTIARILAKC 60 (702)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3445555554 5699999999999987554433
No 276
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=95.58 E-value=0.1 Score=64.37 Aligned_cols=50 Identities=22% Similarity=0.345 Sum_probs=30.4
Q ss_pred HHHHHhcCCCCCCccEEEEeCCCcCCCCccHHHHHHHHHHhhcCCceEEEEe
Q 001722 423 LLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTS 474 (1020)
Q Consensus 423 LLr~ll~d~~L~~~s~IIIDEaHERs~~tD~ll~lLk~il~~r~~lklIlmS 474 (1020)
++..+...|....+.+|||||+|.- +....-.+|+.+-.-.+...+|+.+
T Consensus 120 Iie~~~~~P~~a~~KVvIIDEad~L--s~~a~naLLKtLEePp~~~~fIl~t 169 (598)
T PRK09111 120 IIESVRYRPVSARYKVYIIDEVHML--STAAFNALLKTLEEPPPHVKFIFAT 169 (598)
T ss_pred HHHHHHhchhcCCcEEEEEEChHhC--CHHHHHHHHHHHHhCCCCeEEEEEe
Confidence 3334444567889999999999943 3334444555543334456666654
No 277
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.58 E-value=0.059 Score=66.51 Aligned_cols=49 Identities=18% Similarity=0.406 Sum_probs=28.9
Q ss_pred HHHHhcCCCCCCccEEEEeCCCcCCCCccHHHHHHHHHHhhcCCceEEEEe
Q 001722 424 LRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTS 474 (1020)
Q Consensus 424 Lr~ll~d~~L~~~s~IIIDEaHERs~~tD~ll~lLk~il~~r~~lklIlmS 474 (1020)
+..+...+...+|.++||||+|. ++.+..-.+||.+-.-.+...+|+.+
T Consensus 113 i~~~~~~p~~g~~KV~IIDEvh~--Ls~~a~NaLLKtLEEPP~~~~fIL~T 161 (618)
T PRK14951 113 LEQAVYKPVQGRFKVFMIDEVHM--LTNTAFNAMLKTLEEPPEYLKFVLAT 161 (618)
T ss_pred HHHHHhCcccCCceEEEEEChhh--CCHHHHHHHHHhcccCCCCeEEEEEE
Confidence 33344456677899999999994 44444445555443323345555544
No 278
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=95.55 E-value=0.012 Score=60.68 Aligned_cols=121 Identities=21% Similarity=0.275 Sum_probs=73.5
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHHHhcCCCeEEEEecc--hhhcc
Q 001722 529 PPGDILIFMTGQDEIEAACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATN--IAETS 606 (1020)
Q Consensus 529 ~~g~ILVFl~g~~eie~l~~~L~e~l~~l~~~~~~~~~~l~vl~lhs~L~~~eq~~I~~~f~~g~rkVIVATn--iaEtG 606 (1020)
.+|.+|||+|+....+.+...+.+... ..++.++.- .......+++.|..+.--|++|+. .+..|
T Consensus 8 ~~g~~lv~f~Sy~~l~~~~~~~~~~~~---------~~~~~v~~q----~~~~~~~~l~~~~~~~~~il~~v~~g~~~EG 74 (167)
T PF13307_consen 8 VPGGVLVFFPSYRRLEKVYERLKERLE---------EKGIPVFVQ----GSKSRDELLEEFKRGEGAILLAVAGGSFSEG 74 (167)
T ss_dssp CSSEEEEEESSHHHHHHHHTT-TSS-E----------ETSCEEES----TCCHHHHHHHHHCCSSSEEEEEETTSCCGSS
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHhhcc---------cccceeeec----CcchHHHHHHHHHhccCeEEEEEecccEEEe
Confidence 469999999999999988876643210 012222222 245667888999999999999998 99999
Q ss_pred CCCCC--eeEEEEcCCccceeccCCC-------------CcccccccccCHHHHHHHhcccCCCCC--CEEEEc
Q 001722 607 LTVDG--IFYVIDTGYGKMKVYNPKM-------------GMDALQVFPVSRAAADQRAGRAGRTGP--GTCYRL 663 (1020)
Q Consensus 607 ItIp~--V~~VID~G~~K~~~yd~~~-------------g~~~L~~~piS~as~~QRaGRAGR~g~--G~cyrL 663 (1020)
||+++ ++.||-.|+--...-||.. +.. ....|...-...|-+||+=|... |..+.|
T Consensus 75 iD~~~~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~-~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~ll 147 (167)
T PF13307_consen 75 IDFPGDLLRAVIIVGLPFPPPSDPLVQAKREYLDKQGKNPFR-DWYLPPAIRKLKQAIGRLIRSEDDYGVIILL 147 (167)
T ss_dssp S--ECESEEEEEEES-----TTCHHHHHHHHHHHHCCTTCHH-HHTHHHHHHHHHHHHHCC--STT-EEEEEEE
T ss_pred ecCCCchhheeeecCCCCCCCCCHHHHHHHHHHHHHhccchh-hHhhHHHHHHHhhhcCcceeccCCcEEEEEE
Confidence 99996 7788877764433323211 111 12234444567899999999886 444433
No 279
>PRK04195 replication factor C large subunit; Provisional
Probab=95.55 E-value=0.16 Score=61.39 Aligned_cols=25 Identities=20% Similarity=0.331 Sum_probs=20.5
Q ss_pred CCeEEEEecCCCchHHHHHHHHHHh
Q 001722 338 NQVVVVVGETGSGKTTQLTQYLLED 362 (1020)
Q Consensus 338 ~q~vII~gpTGSGKTtqi~q~Lle~ 362 (1020)
.+.++|.||+|+||||.+-.++.+.
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~el 63 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALANDY 63 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 5789999999999999986655544
No 280
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=95.55 E-value=0.13 Score=60.03 Aligned_cols=144 Identities=22% Similarity=0.178 Sum_probs=88.1
Q ss_pred CCCcHHHHHHHHHHHHhCCe-----EEEEecCCCchHHHHHHHHHHhcccCCCEEEEEcccHHHHHHHHHHHHHHhcccc
Q 001722 321 YLPIFSVRDELLQVIRENQV-----VVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTEL 395 (1020)
Q Consensus 321 ~LPi~~~q~eil~~i~~~q~-----vII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~lA~qva~rva~e~~~~l 395 (1020)
.+|+-++|.+.+..+..... -|+.-+-|-|||.|....++...- +...+|+.|.. +.+|....+.....
T Consensus 182 ii~LL~fQkE~l~Wl~~QE~Ss~~GGiLADEMGMGKTIQtIaLllae~~--ra~tLVvaP~V-AlmQW~nEI~~~T~--- 255 (791)
T KOG1002|consen 182 IIPLLPFQKEGLAWLTSQEESSVAGGILADEMGMGKTIQTIALLLAEVD--RAPTLVVAPTV-ALMQWKNEIERHTS--- 255 (791)
T ss_pred eecchhhhHHHHHHHHHhhhhhhccceehhhhccchHHHHHHHHHhccc--cCCeeEEccHH-HHHHHHHHHHHhcc---
Confidence 57889999999887754332 366778999999998777776432 34578888975 44566666654433
Q ss_pred CCEEEEEEeeeecCC-----CCccEEEEchHHHHHHHhc-CC-------------CCCC--ccEEEEeCCC---cCCCCc
Q 001722 396 GDKVGYAIRFEDVTG-----PSTLIKYMTDGVLLRETLK-DS-------------DLDK--YRVIVMDEAH---ERSLST 451 (1020)
Q Consensus 396 G~~VGy~ir~e~~~s-----~~t~I~~~T~g~LLr~ll~-d~-------------~L~~--~s~IIIDEaH---ERs~~t 451 (1020)
|..--|...+..... .+.+++..|..++-..... +. .|.+ +--||+|||| +|..+|
T Consensus 256 gslkv~~YhG~~R~~nikel~~YDvVLTty~vvEs~yRk~~~GfrrKngv~ke~SlLHsi~~~RiIlDEAH~IK~R~snT 335 (791)
T KOG1002|consen 256 GSLKVYIYHGAKRDKNIKELMNYDVVLTTYAVVESVYRKQDYGFRRKNGVDKEKSLLHSIKFYRIILDEAHNIKDRQSNT 335 (791)
T ss_pred CceEEEEEecccccCCHHHhhcCcEEEEecHHHHHHHHhccccccccCCcccccchhhhceeeeeehhhhcccccccccH
Confidence 443333333222211 2456777777766554432 11 1443 3459999999 477777
Q ss_pred cHHHHHHHHHHhhcCCceEEEEeccC
Q 001722 452 DVLFGILKKVVARRRDFKLIVTSATL 477 (1020)
Q Consensus 452 D~ll~lLk~il~~r~~lklIlmSATl 477 (1020)
--..--|+. .+-+.+|.|+
T Consensus 336 ArAV~~L~t-------t~rw~LSGTP 354 (791)
T KOG1002|consen 336 ARAVFALET-------TYRWCLSGTP 354 (791)
T ss_pred HHHHHhhHh-------hhhhhccCCc
Confidence 533332322 2347789998
No 281
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=95.55 E-value=1.2 Score=54.60 Aligned_cols=91 Identities=18% Similarity=0.166 Sum_probs=69.4
Q ss_pred CCeEEEEecCCCCHHHHHHHHHHhc---CCCeEEEEecchhhccCCCCCeeEEEEcCCccceeccCCCCcccccccccCH
Q 001722 566 PELLILPIYSQLPADLQAKIFEKAK---EGTRKCIVATNIAETSLTVDGIFYVIDTGYGKMKVYNPKMGMDALQVFPVSR 642 (1020)
Q Consensus 566 ~~l~vl~lhs~L~~~eq~~I~~~f~---~g~rkVIVATniaEtGItIp~V~~VID~G~~K~~~yd~~~g~~~L~~~piS~ 642 (1020)
.++....+||++...+|..+.+.|. .|.+-.|++=..-+-|||+-|-+++|-.++ .|| |.=-
T Consensus 769 ~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHlilvDl----HWN-----------PaLE 833 (901)
T KOG4439|consen 769 GGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHLILVDL----HWN-----------PALE 833 (901)
T ss_pred CCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceEEEEec----ccC-----------HHHH
Confidence 3567788999999999999999884 335666677778889999999999986443 233 4444
Q ss_pred HHHHHHhcccCCCCCCEEEEccChhhHhh
Q 001722 643 AAADQRAGRAGRTGPGTCYRLYTESAYLN 671 (1020)
Q Consensus 643 as~~QRaGRAGR~g~G~cyrLyt~~~~~~ 671 (1020)
.++--|+=|.|-..+-..||+..+...+.
T Consensus 834 qQAcDRIYR~GQkK~V~IhR~~~~gTvEq 862 (901)
T KOG4439|consen 834 QQACDRIYRMGQKKDVFIHRLMCKGTVEQ 862 (901)
T ss_pred HHHHHHHHHhcccCceEEEEEEecCcHHH
Confidence 56667788888877889999988776543
No 282
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.51 E-value=0.068 Score=64.21 Aligned_cols=31 Identities=23% Similarity=0.467 Sum_probs=21.6
Q ss_pred HHHHHHhCCe---EEEEecCCCchHHHHHHHHHH
Q 001722 331 LLQVIRENQV---VVVVGETGSGKTTQLTQYLLE 361 (1020)
Q Consensus 331 il~~i~~~q~---vII~gpTGSGKTtqi~q~Lle 361 (1020)
+...+..++. +|++||+|+||||.+-.+...
T Consensus 26 L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~ 59 (472)
T PRK14962 26 IINALKKNSISHAYIFAGPRGTGKTTVARILAKS 59 (472)
T ss_pred HHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3344555543 799999999999987655433
No 283
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=95.42 E-value=0.082 Score=63.23 Aligned_cols=35 Identities=23% Similarity=0.131 Sum_probs=22.8
Q ss_pred CeEEEEecCCCchHHHHHHHHHHhcccC--CCEEEEEc
Q 001722 339 QVVVVVGETGSGKTTQLTQYLLEDGYTT--NGIVGCTQ 374 (1020)
Q Consensus 339 q~vII~gpTGSGKTtqi~q~Lle~~~~~--~~~Il~tq 374 (1020)
..++|.||+|+|||+.+-.+..+ .... +..++++.
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~-~~~~~~~~~v~yi~ 185 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNY-ILEKNPNAKVVYVT 185 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH-HHHhCCCCeEEEEE
Confidence 46899999999999876443333 2222 34566653
No 284
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.42 E-value=0.046 Score=64.85 Aligned_cols=97 Identities=27% Similarity=0.210 Sum_probs=56.0
Q ss_pred CCCcHHHHHHHHHHHHhC--CeEEEEecCCCchHHHHHHHHHHhcccCCCEEEEEcccHHHHHHHHHHHHHHhccccCCE
Q 001722 321 YLPIFSVRDELLQVIREN--QVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELGDK 398 (1020)
Q Consensus 321 ~LPi~~~q~eil~~i~~~--q~vII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~lA~qva~rva~e~~~~lG~~ 398 (1020)
.|..++.+.+.+..+.+. -.++|+|||||||||.+-.+|-+..-. ..+ ++|. .+.
T Consensus 239 ~Lg~~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTTLY~~L~~ln~~-~~n-I~Ti---------------------EDP 295 (500)
T COG2804 239 KLGMSPFQLARLLRLLNRPQGLILVTGPTGSGKTTTLYAALSELNTP-ERN-IITI---------------------EDP 295 (500)
T ss_pred HhCCCHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHHHHHHhcCC-Cce-EEEe---------------------eCC
Confidence 455666666655555443 467889999999999986665544322 223 3331 234
Q ss_pred EEEEEeeeecCCCCccEEEEchHHHHHHHhcCCCCCCccEEEEeCCC
Q 001722 399 VGYAIRFEDVTGPSTLIKYMTDGVLLRETLKDSDLDKYRVIVMDEAH 445 (1020)
Q Consensus 399 VGy~ir~e~~~s~~t~I~~~T~g~LLr~ll~d~~L~~~s~IIIDEaH 445 (1020)
|-|.+..-....-+.++ =+|-...+|.++. .+.++|+|.|+-
T Consensus 296 VE~~~~gI~Q~qVN~k~-gltfa~~LRa~LR----qDPDvImVGEIR 337 (500)
T COG2804 296 VEYQLPGINQVQVNPKI-GLTFARALRAILR----QDPDVIMVGEIR 337 (500)
T ss_pred eeeecCCcceeeccccc-CCCHHHHHHHHhc----cCCCeEEEeccC
Confidence 55544433332222222 2566667777653 245699999994
No 285
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.38 E-value=0.045 Score=64.40 Aligned_cols=30 Identities=23% Similarity=0.322 Sum_probs=21.8
Q ss_pred HHHHHHhCC---eEEEEecCCCchHHHHHHHHH
Q 001722 331 LLQVIRENQ---VVVVVGETGSGKTTQLTQYLL 360 (1020)
Q Consensus 331 il~~i~~~q---~vII~gpTGSGKTtqi~q~Ll 360 (1020)
+..++.+++ .+|++||.|+||||.+..+..
T Consensus 28 L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~ 60 (397)
T PRK14955 28 IQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAK 60 (397)
T ss_pred HHHHHHhCCcceeEEEECCCCCCHHHHHHHHHH
Confidence 445555654 388999999999998765543
No 286
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=95.36 E-value=0.078 Score=58.65 Aligned_cols=44 Identities=30% Similarity=0.406 Sum_probs=33.3
Q ss_pred HHHHHHhCCeEEEEecCCCchHHHHHHHHHHhcccCCCEEEEEc
Q 001722 331 LLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQ 374 (1020)
Q Consensus 331 il~~i~~~q~vII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tq 374 (1020)
++.-+..+..++|.|+||+|||+.+.+++.......+..|+++.
T Consensus 23 ~~gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS 66 (271)
T cd01122 23 LTKGLRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTIS 66 (271)
T ss_pred eeEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEE
Confidence 34456778999999999999999998887765444355666653
No 287
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.36 E-value=0.073 Score=54.87 Aligned_cols=126 Identities=21% Similarity=0.296 Sum_probs=63.0
Q ss_pred HHhCCeEEEEecCCCchHHHHHHHHHHhcccCCCEEEEEc-ccHHHHHHHHHHHHHHhccccCCEEEEEEeeeecCCCCc
Q 001722 335 IRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQ-PRRVAAMSVAKRVSEEMDTELGDKVGYAIRFEDVTGPST 413 (1020)
Q Consensus 335 i~~~q~vII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tq-PrR~lA~qva~rva~e~~~~lG~~VGy~ir~e~~~s~~t 413 (1020)
+..++.+.|+||+||||||.+-...- ......|.|.+-- +.... . ...+. ..+||........ +.+
T Consensus 25 i~~G~~~~l~G~nGsGKstLl~~i~G-~~~~~~G~i~~~g~~~~~~--~-~~~~~--------~~i~~~~~~~~~~-~~t 91 (171)
T cd03228 25 IKPGEKVAIVGPSGSGKSTLLKLLLR-LYDPTSGEILIDGVDLRDL--D-LESLR--------KNIAYVPQDPFLF-SGT 91 (171)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHc-CCCCCCCEEEECCEEhhhc--C-HHHHH--------hhEEEEcCCchhc-cch
Confidence 45789999999999999997644332 2222345554321 11000 0 01111 1234421110000 111
Q ss_pred cEE-EEchHHHHHHHhcCCCCCCccEEEEeCCCcCCCCcc---HHHHHHHHHHhhcCCceEEEEeccC
Q 001722 414 LIK-YMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTD---VLFGILKKVVARRRDFKLIVTSATL 477 (1020)
Q Consensus 414 ~I~-~~T~g~LLr~ll~d~~L~~~s~IIIDEaHERs~~tD---~ll~lLk~il~~r~~lklIlmSATl 477 (1020)
..- +.+.|+..+..+....+.+.+++|+||-= .+++.. .+..+++.+ .....+|+.|..+
T Consensus 92 ~~e~lLS~G~~~rl~la~al~~~p~llllDEP~-~gLD~~~~~~l~~~l~~~---~~~~tii~~sh~~ 155 (171)
T cd03228 92 IRENILSGGQRQRIAIARALLRDPPILILDEAT-SALDPETEALILEALRAL---AKGKTVIVIAHRL 155 (171)
T ss_pred HHHHhhCHHHHHHHHHHHHHhcCCCEEEEECCC-cCCCHHHHHHHHHHHHHh---cCCCEEEEEecCH
Confidence 000 16667766655555556678899999965 455544 344444443 2344556555544
No 288
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=95.35 E-value=0.032 Score=59.21 Aligned_cols=32 Identities=31% Similarity=0.609 Sum_probs=23.4
Q ss_pred HHHHHHHh--CCeEEEEecCCCchHHHHHHHHHH
Q 001722 330 ELLQVIRE--NQVVVVVGETGSGKTTQLTQYLLE 361 (1020)
Q Consensus 330 eil~~i~~--~q~vII~gpTGSGKTtqi~q~Lle 361 (1020)
.+.+.+.. ++.++|.||.|+|||+.+-.++..
T Consensus 10 ~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~ 43 (234)
T PF01637_consen 10 KLKELLESGPSQHILLYGPRGSGKTSLLKEFINE 43 (234)
T ss_dssp HHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHH
T ss_pred HHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHH
Confidence 34444554 589999999999999987655544
No 289
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.33 E-value=0.1 Score=63.20 Aligned_cols=44 Identities=23% Similarity=0.301 Sum_probs=26.3
Q ss_pred hcCCCCCCccEEEEeCCCcCCCCccHHHHHHHHHHhhcCCceEEEE
Q 001722 428 LKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVT 473 (1020)
Q Consensus 428 l~d~~L~~~s~IIIDEaHERs~~tD~ll~lLk~il~~r~~lklIlm 473 (1020)
...+.+..+.+|||||+|. +..+.+-.+++.+-...+...+|++
T Consensus 109 ~~~p~~~~~kVVIIDEad~--ls~~a~naLLk~LEep~~~t~~Il~ 152 (504)
T PRK14963 109 LLAPLRGGRKVYILDEAHM--MSKSAFNALLKTLEEPPEHVIFILA 152 (504)
T ss_pred hhccccCCCeEEEEECccc--cCHHHHHHHHHHHHhCCCCEEEEEE
Confidence 3346678899999999993 3344455555554433334444443
No 290
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=95.32 E-value=0.078 Score=68.12 Aligned_cols=119 Identities=24% Similarity=0.338 Sum_probs=60.5
Q ss_pred eEEEEecCCCchHHHHHHHHHHhcccCCCEEEEEcccHHHHHHHHHHHHHHhccccCCEEEEEEeeeecCCCCccEEEEc
Q 001722 340 VVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELGDKVGYAIRFEDVTGPSTLIKYMT 419 (1020)
Q Consensus 340 ~vII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~lA~qva~rva~e~~~~lG~~VGy~ir~e~~~s~~t~I~~~T 419 (1020)
+++++||||+|||..+-. |.+..+.....++++- ..-.+-...++...|...| .||| ..
T Consensus 598 ~~lf~Gp~GvGKT~lA~~-La~~l~~~~~~~~~~d---mse~~~~~~~~~l~g~~~g-yvg~----------------~~ 656 (852)
T TIGR03345 598 VFLLVGPSGVGKTETALA-LAELLYGGEQNLITIN---MSEFQEAHTVSRLKGSPPG-YVGY----------------GE 656 (852)
T ss_pred EEEEECCCCCCHHHHHHH-HHHHHhCCCcceEEEe---HHHhhhhhhhccccCCCCC-cccc----------------cc
Confidence 589999999999987643 4444443333333332 1111111223222332222 2333 23
Q ss_pred hHHHHHHHhcCCCCCCccEEEEeCCCcCCCCccHHHHHHHHHHhhcC-----------CceEEEEeccCCHHHHHHHh
Q 001722 420 DGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRR-----------DFKLIVTSATLNAQKFSDFF 486 (1020)
Q Consensus 420 ~g~LLr~ll~d~~L~~~s~IIIDEaHERs~~tD~ll~lLk~il~~r~-----------~lklIlmSATld~~~f~~~f 486 (1020)
.|.|...+.. ..+++|+|||++ ..+.++. .+|-.++.... .-.+|+||..+-.+.+.+.+
T Consensus 657 ~g~L~~~v~~----~p~svvllDEie--ka~~~v~-~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~TSNlg~~~~~~~~ 727 (852)
T TIGR03345 657 GGVLTEAVRR----KPYSVVLLDEVE--KAHPDVL-ELFYQVFDKGVMEDGEGREIDFKNTVILLTSNAGSDLIMALC 727 (852)
T ss_pred cchHHHHHHh----CCCcEEEEechh--hcCHHHH-HHHHHHhhcceeecCCCcEEeccccEEEEeCCCchHHHHHhc
Confidence 4555555443 457999999997 3334432 23333332211 12577777777666665544
No 291
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=95.31 E-value=0.11 Score=69.72 Aligned_cols=124 Identities=16% Similarity=0.128 Sum_probs=73.9
Q ss_pred CcHHHHHHHHHHHHh--CCeEEEEecCCCchHHHHHHHH--HHhcc-cCCCEEEEEcccHHHHHHHHHHHHHHhccccCC
Q 001722 323 PIFSVRDELLQVIRE--NQVVVVVGETGSGKTTQLTQYL--LEDGY-TTNGIVGCTQPRRVAAMSVAKRVSEEMDTELGD 397 (1020)
Q Consensus 323 Pi~~~q~eil~~i~~--~q~vII~gpTGSGKTtqi~q~L--le~~~-~~~~~Il~tqPrR~lA~qva~rva~e~~~~lG~ 397 (1020)
.+.+-|.+.+..+.. +++++|.|..|+||||.+-..+ +.... ..+..|+.+.|+--+|..+.+ .|..
T Consensus 835 ~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l~~i~~~~~~l~e~~g~~V~glAPTgkAa~~L~e-----~Gi~--- 906 (1623)
T PRK14712 835 KLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQFRAVMSAVNMLPESERPRVVGLGPTHRAVGEMRS-----AGVD--- 906 (1623)
T ss_pred ccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHHHHHHHHHHHHhhccCceEEEEechHHHHHHHHH-----hCch---
Confidence 578889999998885 4899999999999999853322 22211 224568888998877755531 1211
Q ss_pred EEEEEEeeeecCCCCccEEEEchHHHHHH-----HhcCCCCCCccEEEEeCCCcCCCCccHHHHHHHHHHhhcCCceEEE
Q 001722 398 KVGYAIRFEDVTGPSTLIKYMTDGVLLRE-----TLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIV 472 (1020)
Q Consensus 398 ~VGy~ir~e~~~s~~t~I~~~T~g~LLr~-----ll~d~~L~~~s~IIIDEaHERs~~tD~ll~lLk~il~~r~~lklIl 472 (1020)
-.|-..||.. ...+..+...++||||||= ++....+..+++.+. ..+.|+|+
T Consensus 907 -------------------A~TIasfL~~~~~~~~~~~~~~~~~~llIVDEAS--MV~~~~m~~ll~~~~--~~garvVL 963 (1623)
T PRK14712 907 -------------------AQTLASFLHDTQLQQRSGETPDFSNTLFLLDESS--MVGNTDMARAYALIA--AGGGRAVA 963 (1623)
T ss_pred -------------------HhhHHHHhccccchhhcccCCCCCCcEEEEEccc--cccHHHHHHHHHhhh--hCCCEEEE
Confidence 0111111111 1111223356899999997 555544445554432 23578888
Q ss_pred EeccC
Q 001722 473 TSATL 477 (1020)
Q Consensus 473 mSATl 477 (1020)
+.=+-
T Consensus 964 VGD~~ 968 (1623)
T PRK14712 964 SGDTD 968 (1623)
T ss_pred Ecchh
Confidence 76554
No 292
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=95.29 E-value=0.35 Score=62.46 Aligned_cols=121 Identities=22% Similarity=0.292 Sum_probs=58.9
Q ss_pred CeEEEEecCCCchHHHHHHHHHHhcccCCCEEEEEcccHHHHHHHHHHHHHHhccccCCEEEEEEeeeecCCCCccEEEE
Q 001722 339 QVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELGDKVGYAIRFEDVTGPSTLIKYM 418 (1020)
Q Consensus 339 q~vII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~lA~qva~rva~e~~~~lG~~VGy~ir~e~~~s~~t~I~~~ 418 (1020)
..+++.||||+|||+.+- .|.+..+.....++++--. .... ...++...|... ..+|| .
T Consensus 596 ~~~Lf~Gp~GvGKt~lA~-~La~~l~~~~~~~i~~d~s-~~~~--~~~~~~l~g~~~-g~~g~----------------~ 654 (852)
T TIGR03346 596 GSFLFLGPTGVGKTELAK-ALAEFLFDDEDAMVRIDMS-EYME--KHSVARLIGAPP-GYVGY----------------E 654 (852)
T ss_pred eEEEEEcCCCCCHHHHHH-HHHHHhcCCCCcEEEEech-hhcc--cchHHHhcCCCC-CccCc----------------c
Confidence 358899999999998763 3455444433333332110 0000 111222223221 12333 1
Q ss_pred chHHHHHHHhcCCCCCCccEEEEeCCCcCCCCccHHHHHHHHHHhhc--------CCc--eEEEEeccCCHHHHHHHh
Q 001722 419 TDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARR--------RDF--KLIVTSATLNAQKFSDFF 486 (1020)
Q Consensus 419 T~g~LLr~ll~d~~L~~~s~IIIDEaHERs~~tD~ll~lLk~il~~r--------~~l--klIlmSATld~~~f~~~f 486 (1020)
..|.|...+.. ..+++|+|||++ ..+.++.-.++..+-..+ -++ .+|+||..+..+.+.+.+
T Consensus 655 ~~g~l~~~v~~----~p~~vlllDeie--ka~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TSn~g~~~~~~~~ 726 (852)
T TIGR03346 655 EGGQLTEAVRR----KPYSVVLFDEVE--KAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGSQFIQELA 726 (852)
T ss_pred cccHHHHHHHc----CCCcEEEEeccc--cCCHHHHHHHHHHHhcCceecCCCeEEecCCcEEEEeCCcchHhHhhhc
Confidence 12444444333 246899999998 345555444443321110 123 356677777666555543
No 293
>PRK11823 DNA repair protein RadA; Provisional
Probab=95.28 E-value=0.064 Score=64.02 Aligned_cols=55 Identities=25% Similarity=0.309 Sum_probs=37.6
Q ss_pred HHhCCeEEEEecCCCchHHHHHHHHHHhcccCCCEEEEEcccHHHHHHHHHHHHHHhc
Q 001722 335 IRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMD 392 (1020)
Q Consensus 335 i~~~q~vII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~lA~qva~rva~e~~ 392 (1020)
+..+..++|.|++|+||||.+.|++.... ..+.+++++.- .....++..+. +.++
T Consensus 77 i~~Gs~~lI~G~pG~GKTtL~lq~a~~~a-~~g~~vlYvs~-Ees~~qi~~ra-~rlg 131 (446)
T PRK11823 77 LVPGSVVLIGGDPGIGKSTLLLQVAARLA-AAGGKVLYVSG-EESASQIKLRA-ERLG 131 (446)
T ss_pred ccCCEEEEEECCCCCCHHHHHHHHHHHHH-hcCCeEEEEEc-cccHHHHHHHH-HHcC
Confidence 45578999999999999999999887654 23567777653 23344555553 3344
No 294
>PRK09087 hypothetical protein; Validated
Probab=95.26 E-value=0.1 Score=56.69 Aligned_cols=22 Identities=41% Similarity=0.582 Sum_probs=18.1
Q ss_pred CCeEEEEecCCCchHHHHHHHH
Q 001722 338 NQVVVVVGETGSGKTTQLTQYL 359 (1020)
Q Consensus 338 ~q~vII~gpTGSGKTtqi~q~L 359 (1020)
+..++|+||+|||||+.+-.+.
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~ 65 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWR 65 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHH
Confidence 5669999999999999885433
No 295
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.24 E-value=0.0098 Score=61.75 Aligned_cols=131 Identities=18% Similarity=0.193 Sum_probs=68.3
Q ss_pred HHhCCeEEEEecCCCchHHHHHHHHHHhcccCCCEEEEEc-ccHHHHHHHHHHHHHHhccccCCEEEEEEeeeecC---C
Q 001722 335 IRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQ-PRRVAAMSVAKRVSEEMDTELGDKVGYAIRFEDVT---G 410 (1020)
Q Consensus 335 i~~~q~vII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tq-PrR~lA~qva~rva~e~~~~lG~~VGy~ir~e~~~---s 410 (1020)
+..++.+.|+|+.||||||.+-.. .-......|.|.+-- +..... +....+ ...++|........ +
T Consensus 23 i~~G~~~~i~G~nGsGKSTLl~~l-~G~~~~~~G~i~~~g~~~~~~~-~~~~~~--------~~~i~~~~q~~~~~~~~t 92 (178)
T cd03229 23 IEAGEIVALLGPSGSGKSTLLRCI-AGLEEPDSGSILIDGEDLTDLE-DELPPL--------RRRIGMVFQDFALFPHLT 92 (178)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHH-hCCCCCCceEEEECCEEccccc-hhHHHH--------hhcEEEEecCCccCCCCC
Confidence 357899999999999999976443 222122245554411 100000 000111 12344432111111 1
Q ss_pred CCccEEE-EchHHHHHHHhcCCCCCCccEEEEeCCCcCCCCcc---HHHHHHHHHHhhcCCceEEEEeccC
Q 001722 411 PSTLIKY-MTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTD---VLFGILKKVVARRRDFKLIVTSATL 477 (1020)
Q Consensus 411 ~~t~I~~-~T~g~LLr~ll~d~~L~~~s~IIIDEaHERs~~tD---~ll~lLk~il~~r~~lklIlmSATl 477 (1020)
-.-.+.+ .+.|+..+..+....+.+..++|+||-- .+++.+ .+..+++.+... ....+|+.|.-+
T Consensus 93 ~~~~l~~~lS~G~~qr~~la~al~~~p~llilDEP~-~~LD~~~~~~l~~~l~~~~~~-~~~tiii~sH~~ 161 (178)
T cd03229 93 VLENIALGLSGGQQQRVALARALAMDPDVLLLDEPT-SALDPITRREVRALLKSLQAQ-LGITVVLVTHDL 161 (178)
T ss_pred HHHheeecCCHHHHHHHHHHHHHHCCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCH
Confidence 1112333 7888877766666667788999999977 455554 445555554332 134566655543
No 296
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=95.15 E-value=0.12 Score=65.68 Aligned_cols=118 Identities=20% Similarity=0.270 Sum_probs=90.5
Q ss_pred CCCCCEEEEcCCHHHHHHHHHHHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHHHhcCCCe--EEEEecchhhc
Q 001722 528 SPPGDILIFMTGQDEIEAACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTR--KCIVATNIAET 605 (1020)
Q Consensus 528 ~~~g~ILVFl~g~~eie~l~~~L~e~l~~l~~~~~~~~~~l~vl~lhs~L~~~eq~~I~~~f~~g~r--kVIVATniaEt 605 (1020)
..+..+|||..=.. +-+.|...| +..++..+-|.|....++|+...+.|....+ ..|++|-.-..
T Consensus 1274 ~eghRvLIfTQMtk----mLDVLeqFL---------nyHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSggv 1340 (1958)
T KOG0391|consen 1274 SEGHRVLIFTQMTK----MLDVLEQFL---------NYHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSGGV 1340 (1958)
T ss_pred hcCceEEehhHHHH----HHHHHHHHH---------hhcceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCCcc
Confidence 45678899863222 223333322 2357788889999999999999999987654 77899999999
Q ss_pred cCCCCCeeEEEEcCCccceeccCCCCcccccccccCHHHHHHHhcccCCCCCCEEEEccChhhHhhcc
Q 001722 606 SLTVDGIFYVIDTGYGKMKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTGPGTCYRLYTESAYLNEM 673 (1020)
Q Consensus 606 GItIp~V~~VID~G~~K~~~yd~~~g~~~L~~~piS~as~~QRaGRAGR~g~G~cyrLyt~~~~~~~m 673 (1020)
|||+-+.+.||- ||+.- .|.=-+.+.-|+-|.|++..-..|||.++...+..+
T Consensus 1341 GiNLtgADTVvF--------YDsDw-------NPtMDaQAQDrChRIGqtRDVHIYRLISe~TIEeni 1393 (1958)
T KOG0391|consen 1341 GINLTGADTVVF--------YDSDW-------NPTMDAQAQDRCHRIGQTRDVHIYRLISERTIEENI 1393 (1958)
T ss_pred ccccccCceEEE--------ecCCC-------CchhhhHHHHHHHhhcCccceEEEEeeccchHHHHH
Confidence 999999999994 77543 255567888899999999999999999988775544
No 297
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=95.14 E-value=0.091 Score=72.87 Aligned_cols=124 Identities=17% Similarity=0.122 Sum_probs=76.5
Q ss_pred CCcHHHHHHHHHHHHhC--CeEEEEecCCCchHHHHH---HHHHHhcccCCCEEEEEcccHHHHHHHHHHHHHHhccccC
Q 001722 322 LPIFSVRDELLQVIREN--QVVVVVGETGSGKTTQLT---QYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELG 396 (1020)
Q Consensus 322 LPi~~~q~eil~~i~~~--q~vII~gpTGSGKTtqi~---q~Lle~~~~~~~~Il~tqPrR~lA~qva~rva~e~~~~lG 396 (1020)
..+.+-|.+.+..+..+ ++++|.|..|+||||.+- ..+.+.....+..|+.+.|+-.+|..+.. .|..
T Consensus 1018 ~~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~~~g~~v~glApT~~Aa~~L~~-----~g~~-- 1090 (1960)
T TIGR02760 1018 ERLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTMLESRYKPVLQAFESEQLQVIGLAPTHEAVGELKS-----AGVQ-- 1090 (1960)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhHHHHHHHHHHHHHhcCCeEEEEeChHHHHHHHHh-----cCCc--
Confidence 46789999999998754 788999999999999883 33333333335578888999877765532 1110
Q ss_pred CEEEEEEeeeecCCCCccEEEEchHHHHHH---HhcCCCCCCccEEEEeCCCcCCCCccHHHHHHHHHHhhcCCceEEEE
Q 001722 397 DKVGYAIRFEDVTGPSTLIKYMTDGVLLRE---TLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVT 473 (1020)
Q Consensus 397 ~~VGy~ir~e~~~s~~t~I~~~T~g~LLr~---ll~d~~L~~~s~IIIDEaHERs~~tD~ll~lLk~il~~r~~lklIlm 473 (1020)
-.|-..|+.. ....+.+...++|||||+= ++.+..+..+++.+. .+..|+|++
T Consensus 1091 --------------------a~Ti~s~l~~~~~~~~~~~~~~~~v~ivDEas--Mv~~~~~~~l~~~~~--~~~ak~vlv 1146 (1960)
T TIGR02760 1091 --------------------AQTLDSFLTDISLYRNSGGDFRNTLFILDESS--MVSNFQLTHATELVQ--KSGSRAVSL 1146 (1960)
T ss_pred --------------------hHhHHHHhcCcccccccCCCCcccEEEEEccc--cccHHHHHHHHHhcc--CCCCEEEEe
Confidence 0111122210 0112335567899999997 566665555555443 335677776
Q ss_pred ecc
Q 001722 474 SAT 476 (1020)
Q Consensus 474 SAT 476 (1020)
-=+
T Consensus 1147 GD~ 1149 (1960)
T TIGR02760 1147 GDI 1149 (1960)
T ss_pred CCh
Confidence 533
No 298
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=95.13 E-value=0.047 Score=56.41 Aligned_cols=128 Identities=22% Similarity=0.261 Sum_probs=66.2
Q ss_pred HHhCCeEEEEecCCCchHHHHHHHHHHhcccCCCEEEEEcccHHHHHHHHHHHHHHhccccCCEEEEEEeeeecCCCCcc
Q 001722 335 IRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELGDKVGYAIRFEDVTGPSTL 414 (1020)
Q Consensus 335 i~~~q~vII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~lA~qva~rva~e~~~~lG~~VGy~ir~e~~~s~~t~ 414 (1020)
+..++.+.|+||+||||||.+-..+- ......|.|.+- ........ ...+. ..++|.... ....+.+.
T Consensus 25 i~~Ge~~~i~G~nGsGKStLl~~l~G-~~~~~~G~i~~~-g~~~~~~~-~~~~~--------~~i~~~~q~-~~~~~~tv 92 (173)
T cd03246 25 IEPGESLAIIGPSGSGKSTLARLILG-LLRPTSGRVRLD-GADISQWD-PNELG--------DHVGYLPQD-DELFSGSI 92 (173)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHh-ccCCCCCeEEEC-CEEcccCC-HHHHH--------hheEEECCC-CccccCcH
Confidence 35689999999999999997654332 222224555431 11000000 00111 123442111 00001110
Q ss_pred EE-EEchHHHHHHHhcCCCCCCccEEEEeCCCcCCCCcc---HHHHHHHHHHhhcCCceEEEEeccC
Q 001722 415 IK-YMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTD---VLFGILKKVVARRRDFKLIVTSATL 477 (1020)
Q Consensus 415 I~-~~T~g~LLr~ll~d~~L~~~s~IIIDEaHERs~~tD---~ll~lLk~il~~r~~lklIlmSATl 477 (1020)
.- +.+.|+..+..+....+.+.+++|+||.= .+++.. .++.+++.+.. ....+|+.|.-+
T Consensus 93 ~~~lLS~G~~qrv~la~al~~~p~~lllDEPt-~~LD~~~~~~l~~~l~~~~~--~~~tii~~sh~~ 156 (173)
T cd03246 93 AENILSGGQRQRLGLARALYGNPRILVLDEPN-SHLDVEGERALNQAIAALKA--AGATRIVIAHRP 156 (173)
T ss_pred HHHCcCHHHHHHHHHHHHHhcCCCEEEEECCc-cccCHHHHHHHHHHHHHHHh--CCCEEEEEeCCH
Confidence 00 16778777766666667788999999975 345543 45555555432 245666666654
No 299
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=95.13 E-value=0.17 Score=52.52 Aligned_cols=114 Identities=21% Similarity=0.200 Sum_probs=53.1
Q ss_pred eEEEEecCCCchHHHHHHHHHHhcccCC-CEEEEEcccHHHHHHHHHHHHHHhccccCCEEEEEEeeeecCCC-------
Q 001722 340 VVVVVGETGSGKTTQLTQYLLEDGYTTN-GIVGCTQPRRVAAMSVAKRVSEEMDTELGDKVGYAIRFEDVTGP------- 411 (1020)
Q Consensus 340 ~vII~gpTGSGKTtqi~q~Lle~~~~~~-~~Il~tqPrR~lA~qva~rva~e~~~~lG~~VGy~ir~e~~~s~------- 411 (1020)
+++|+|+.|+||||.+...+-.. ...+ ...++.+|.. ..-|..+||.+..-. ...
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l-~~~~~~v~Gf~t~ev---------------r~~g~r~GF~iv~l~-~g~~~~la~~ 63 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEEL-KKKGLPVGGFYTEEV---------------RENGRRIGFDIVDLN-SGEEAILARV 63 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHH-HHTCGGEEEEEEEEE---------------ETTSSEEEEEEEET--TS-EEEEEET
T ss_pred CEEEECcCCCCHHHHHHHHHHHh-hccCCccceEEeecc---------------cCCCceEEEEEEECc-CCCccccccc
Confidence 47899999999999986654332 1111 2333333310 124667777654321 111
Q ss_pred --CccEEEEchHHHHHHHh--cCCCC----CCccEEEEeCCCcCCCCccHHHHHHHHHHhhcCCceEEE
Q 001722 412 --STLIKYMTDGVLLRETL--KDSDL----DKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIV 472 (1020)
Q Consensus 412 --~t~I~~~T~g~LLr~ll--~d~~L----~~~s~IIIDEaHERs~~tD~ll~lLk~il~~r~~lklIl 472 (1020)
.....+......+..+. .-+.| .+.++|||||+--.-+...-+...+..++. ++..+|+
T Consensus 64 ~~~~~~~vgky~v~~e~fe~~~~~~L~~~~~~~~liviDEIG~mEl~~~~F~~~v~~~l~--s~~~vi~ 130 (168)
T PF03266_consen 64 DFRSGPRVGKYFVDLESFEEIGLPALRNALSSSDLIVIDEIGKMELKSPGFREAVEKLLD--SNKPVIG 130 (168)
T ss_dssp TSS-SCECTTCEE-HHHHHCCCCCCCHHHHHCCHEEEE---STTCCC-CHHHHHHHHHHC--TTSEEEE
T ss_pred cccccccCCCEEEcHHHHHHHHHHHHHhhcCCCCEEEEeccchhhhcCHHHHHHHHHHHc--CCCcEEE
Confidence 11111111112222211 11222 366899999998655666666666666665 3344443
No 300
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=95.10 E-value=0.044 Score=57.00 Aligned_cols=126 Identities=17% Similarity=0.251 Sum_probs=65.9
Q ss_pred HHhCCeEEEEecCCCchHHHHHHHHHHhcccCCCEEEEE-ccc-----HHHHHHHH--HHHHHHhccccCCEEEEEEeee
Q 001722 335 IRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCT-QPR-----RVAAMSVA--KRVSEEMDTELGDKVGYAIRFE 406 (1020)
Q Consensus 335 i~~~q~vII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~t-qPr-----R~lA~qva--~rva~e~~~~lG~~VGy~ir~e 406 (1020)
+..++.+.|+|++||||||.+-.. .-......|.|.+- .+. ......+. ..+.+.++..
T Consensus 22 i~~G~~~~l~G~nGsGKStLl~~i-~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~------------ 88 (180)
T cd03214 22 IEAGEIVGILGPNGAGKSTLLKTL-AGLLKPSSGEILLDGKDLASLSPKELARKIAYVPQALELLGLA------------ 88 (180)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHH-hCCCCCCCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCH------------
Confidence 347899999999999999976443 22222234555431 111 00111110 0111211110
Q ss_pred ecCCCCccEEEEchHHHHHHHhcCCCCCCccEEEEeCCCcCCCCcc---HHHHHHHHHHhhcCCceEEEEeccC
Q 001722 407 DVTGPSTLIKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTD---VLFGILKKVVARRRDFKLIVTSATL 477 (1020)
Q Consensus 407 ~~~s~~t~I~~~T~g~LLr~ll~d~~L~~~s~IIIDEaHERs~~tD---~ll~lLk~il~~r~~lklIlmSATl 477 (1020)
.. ....+.-++.|+..+..+....+.+.+++|+||.= .+++.+ .+..+++.+... ....+|+.|.-+
T Consensus 89 ~~--~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~-~~LD~~~~~~~~~~l~~~~~~-~~~tiii~sh~~ 158 (180)
T cd03214 89 HL--ADRPFNELSGGERQRVLLARALAQEPPILLLDEPT-SHLDIAHQIELLELLRRLARE-RGKTVVMVLHDL 158 (180)
T ss_pred hH--hcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCc-cCCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCH
Confidence 00 11234456778766665555566778999999976 455543 444555544322 145666666554
No 301
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.10 E-value=0.064 Score=54.99 Aligned_cols=116 Identities=18% Similarity=0.250 Sum_probs=65.7
Q ss_pred HHhCCeEEEEecCCCchHHHHHHHHHHhcccCCCEEEEEc-ccHHHHHHHHHHHHHHhccccCCEEEEEEeeeecCCCCc
Q 001722 335 IRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQ-PRRVAAMSVAKRVSEEMDTELGDKVGYAIRFEDVTGPST 413 (1020)
Q Consensus 335 i~~~q~vII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tq-PrR~lA~qva~rva~e~~~~lG~~VGy~ir~e~~~s~~t 413 (1020)
+..++.+.|.|+.||||||.+-...- ......|.|.+-- +... ...... ....+||...
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~i~G-~~~~~~G~v~~~g~~~~~--~~~~~~--------~~~~i~~~~q--------- 82 (163)
T cd03216 23 VRRGEVHALLGENGAGKSTLMKILSG-LYKPDSGEILVDGKEVSF--ASPRDA--------RRAGIAMVYQ--------- 82 (163)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhC-CCCCCCeEEEECCEECCc--CCHHHH--------HhcCeEEEEe---------
Confidence 45789999999999999998754332 2222245554311 1000 000000 1123455322
Q ss_pred cEEEEchHHHHHHHhcCCCCCCccEEEEeCCCcCCCCcc---HHHHHHHHHHhhcCCceEEEEeccC
Q 001722 414 LIKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTD---VLFGILKKVVARRRDFKLIVTSATL 477 (1020)
Q Consensus 414 ~I~~~T~g~LLr~ll~d~~L~~~s~IIIDEaHERs~~tD---~ll~lLk~il~~r~~lklIlmSATl 477 (1020)
.+.|+..+..+....+.+.+++|+||-- .+++.+ .+..+++.+.. ...-+|+.|..+
T Consensus 83 ----LS~G~~qrl~laral~~~p~illlDEP~-~~LD~~~~~~l~~~l~~~~~--~~~tiii~sh~~ 142 (163)
T cd03216 83 ----LSVGERQMVEIARALARNARLLILDEPT-AALTPAEVERLFKVIRRLRA--QGVAVIFISHRL 142 (163)
T ss_pred ----cCHHHHHHHHHHHHHhcCCCEEEEECCC-cCCCHHHHHHHHHHHHHHHH--CCCEEEEEeCCH
Confidence 7788877766665567778999999976 455544 34455554422 245566666554
No 302
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=95.09 E-value=0.031 Score=61.95 Aligned_cols=44 Identities=27% Similarity=0.349 Sum_probs=31.4
Q ss_pred HHHHhCCeEEEEecCCCchHHHHHHHHHHhcccCCCEEEEEcccH
Q 001722 333 QVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRR 377 (1020)
Q Consensus 333 ~~i~~~q~vII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR 377 (1020)
..++.+.+++|+|+|||||||.+-.++ +..-....+|++++-..
T Consensus 122 ~~v~~~~~ili~G~tGSGKTT~l~all-~~i~~~~~~iv~iEd~~ 165 (270)
T PF00437_consen 122 SAVRGRGNILISGPTGSGKTTLLNALL-EEIPPEDERIVTIEDPP 165 (270)
T ss_dssp HCHHTTEEEEEEESTTSSHHHHHHHHH-HHCHTTTSEEEEEESSS
T ss_pred hccccceEEEEECCCccccchHHHHHh-hhccccccceEEecccc
Confidence 345678999999999999999985554 43333236788876543
No 303
>PRK06620 hypothetical protein; Validated
Probab=95.06 E-value=0.12 Score=55.58 Aligned_cols=19 Identities=26% Similarity=0.323 Sum_probs=16.4
Q ss_pred CeEEEEecCCCchHHHHHH
Q 001722 339 QVVVVVGETGSGKTTQLTQ 357 (1020)
Q Consensus 339 q~vII~gpTGSGKTtqi~q 357 (1020)
+.++|.||+|||||+.+-.
T Consensus 45 ~~l~l~Gp~G~GKThLl~a 63 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKI 63 (214)
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 5689999999999998754
No 304
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=95.06 E-value=0.068 Score=54.94 Aligned_cols=53 Identities=21% Similarity=0.318 Sum_probs=33.6
Q ss_pred HHHHHhcCCCCCCccEEEEeCCCcCCCCccHHHHHHHHHHhhcCCceEEEEeccC
Q 001722 423 LLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTSATL 477 (1020)
Q Consensus 423 LLr~ll~d~~L~~~s~IIIDEaHERs~~tD~ll~lLk~il~~r~~lklIlmSATl 477 (1020)
+...+...+.-..+.++|||||| .++.+..-++||.+-.-..+..+|++|-.+
T Consensus 90 i~~~~~~~~~~~~~KviiI~~ad--~l~~~a~NaLLK~LEepp~~~~fiL~t~~~ 142 (162)
T PF13177_consen 90 IIEFLSLSPSEGKYKVIIIDEAD--KLTEEAQNALLKTLEEPPENTYFILITNNP 142 (162)
T ss_dssp HHHHCTSS-TTSSSEEEEEETGG--GS-HHHHHHHHHHHHSTTTTEEEEEEES-G
T ss_pred HHHHHHHHHhcCCceEEEeehHh--hhhHHHHHHHHHHhcCCCCCEEEEEEECCh
Confidence 33344445556789999999999 566666667777665444566666666554
No 305
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=95.05 E-value=0.031 Score=61.95 Aligned_cols=65 Identities=18% Similarity=0.184 Sum_probs=37.0
Q ss_pred HHHHHHHHh----CCeEEEEecCCCchHHHHHHHHHHhccc-CCCEEE-EEcccHHHHHHHHHHHHHHhcc
Q 001722 329 DELLQVIRE----NQVVVVVGETGSGKTTQLTQYLLEDGYT-TNGIVG-CTQPRRVAAMSVAKRVSEEMDT 393 (1020)
Q Consensus 329 ~eil~~i~~----~q~vII~gpTGSGKTtqi~q~Lle~~~~-~~~~Il-~tqPrR~lA~qva~rva~e~~~ 393 (1020)
+++.+.+.. .+++.|+|..|+|||+.+.+++.+.... ....++ +.........++...+...++.
T Consensus 6 ~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~ 76 (287)
T PF00931_consen 6 EKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGE 76 (287)
T ss_dssp HHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTC
T ss_pred HHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccc
Confidence 345555555 5789999999999999998877552211 123333 3222222224455555555553
No 306
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.02 E-value=0.065 Score=65.92 Aligned_cols=31 Identities=29% Similarity=0.363 Sum_probs=22.0
Q ss_pred HHHHHHHhCC---eEEEEecCCCchHHHHHHHHH
Q 001722 330 ELLQVIRENQ---VVVVVGETGSGKTTQLTQYLL 360 (1020)
Q Consensus 330 eil~~i~~~q---~vII~gpTGSGKTtqi~q~Ll 360 (1020)
.+..++.+++ .+|++||.|+||||.+-.+..
T Consensus 27 ~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk 60 (624)
T PRK14959 27 ILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAK 60 (624)
T ss_pred HHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 3445555554 588999999999998765443
No 307
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=94.99 E-value=0.1 Score=59.86 Aligned_cols=136 Identities=17% Similarity=0.234 Sum_probs=67.2
Q ss_pred CcHHHHHHHHHHHHhCC----eEEEEecCCCchHHHHHHHHHHhcccCCCEEEEEcccHHHHH---HHHHHHHHHhcccc
Q 001722 323 PIFSVRDELLQVIRENQ----VVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAM---SVAKRVSEEMDTEL 395 (1020)
Q Consensus 323 Pi~~~q~eil~~i~~~q----~vII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~lA~---qva~rva~e~~~~l 395 (1020)
++|+++...++.+.... -++++||.|+|||+.+..+...- +|..|....+- ...+.+.. |...
T Consensus 3 ~~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~~A~~l--------lC~~~~~~~~Cg~C~sC~~~~~--g~HP 72 (328)
T PRK05707 3 EIYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAERLAAAL--------LCEAPQGGGACGSCKGCQLLRA--GSHP 72 (328)
T ss_pred cCCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHHHHHHHH--------cCCCCCCCCCCCCCHHHHHHhc--CCCC
Confidence 56788888887776543 57899999999999875543322 12222100000 00111100 0000
Q ss_pred CCEEEEEEeeeecCCCCccEEEEchHHHHHHHhcCCCCCCccEEEEeCCCcCCCCccHHHHHHHHHHhhcCCceEEEEec
Q 001722 396 GDKVGYAIRFEDVTGPSTLIKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTSA 475 (1020)
Q Consensus 396 G~~VGy~ir~e~~~s~~t~I~~~T~g~LLr~ll~d~~L~~~s~IIIDEaHERs~~tD~ll~lLk~il~~r~~lklIlmSA 475 (1020)
+ + +.+..+ ..+..|.+-.--.+...+...+....+.++|||||| .++..-.-.+||.+-.-.++..+|++|.
T Consensus 73 -D-~-~~i~~~---~~~~~i~id~iR~l~~~~~~~~~~~~~kv~iI~~a~--~m~~~aaNaLLK~LEEPp~~~~fiL~t~ 144 (328)
T PRK05707 73 -D-N-FVLEPE---EADKTIKVDQVRELVSFVVQTAQLGGRKVVLIEPAE--AMNRNAANALLKSLEEPSGDTVLLLISH 144 (328)
T ss_pred -C-E-EEEecc---CCCCCCCHHHHHHHHHHHhhccccCCCeEEEECChh--hCCHHHHHHHHHHHhCCCCCeEEEEEEC
Confidence 0 0 001000 001122222222344444455677889999999999 4555566667775433223444454443
Q ss_pred c
Q 001722 476 T 476 (1020)
Q Consensus 476 T 476 (1020)
-
T Consensus 145 ~ 145 (328)
T PRK05707 145 Q 145 (328)
T ss_pred C
Confidence 3
No 308
>PRK10865 protein disaggregation chaperone; Provisional
Probab=94.97 E-value=0.14 Score=65.97 Aligned_cols=32 Identities=22% Similarity=0.265 Sum_probs=22.0
Q ss_pred eEEEEecCCCchHHHHHHHHHHhcccCCCEEEE
Q 001722 340 VVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGC 372 (1020)
Q Consensus 340 ~vII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~ 372 (1020)
.++++||||+|||+.+ ..|.+..+..+..+++
T Consensus 600 ~~Lf~Gp~G~GKT~lA-~aLa~~l~~~~~~~i~ 631 (857)
T PRK10865 600 SFLFLGPTGVGKTELC-KALANFMFDSDDAMVR 631 (857)
T ss_pred eEEEECCCCCCHHHHH-HHHHHHhhcCCCcEEE
Confidence 6899999999999977 4455555543333443
No 309
>PTZ00293 thymidine kinase; Provisional
Probab=94.96 E-value=0.055 Score=57.99 Aligned_cols=39 Identities=23% Similarity=0.277 Sum_probs=30.2
Q ss_pred hCCeEEEEecCCCchHHHHHHHHHHhcccCCCEEEEEccc
Q 001722 337 ENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPR 376 (1020)
Q Consensus 337 ~~q~vII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPr 376 (1020)
.|...++.||-+|||||.+++.+...... +.+++++-|.
T Consensus 3 ~G~i~vi~GpMfSGKTteLLr~i~~y~~a-g~kv~~~kp~ 41 (211)
T PTZ00293 3 RGTISVIIGPMFSGKTTELMRLVKRFTYS-EKKCVVIKYS 41 (211)
T ss_pred ceEEEEEECCCCChHHHHHHHHHHHHHHc-CCceEEEEec
Confidence 36778999999999999998877665443 5567777773
No 310
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=94.95 E-value=0.11 Score=57.94 Aligned_cols=43 Identities=16% Similarity=0.355 Sum_probs=27.7
Q ss_pred CCCCccEEEEeCCCcCCCCccHHHHHHHHHHhhcCCceEEEEecc
Q 001722 432 DLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTSAT 476 (1020)
Q Consensus 432 ~L~~~s~IIIDEaHERs~~tD~ll~lLk~il~~r~~lklIlmSAT 476 (1020)
....|.+||+|||| ++..|...++.+.+-......++|+..--
T Consensus 126 ~~~~fKiiIlDEcd--smtsdaq~aLrr~mE~~s~~trFiLIcny 168 (346)
T KOG0989|consen 126 PCPPFKIIILDECD--SMTSDAQAALRRTMEDFSRTTRFILICNY 168 (346)
T ss_pred CCCcceEEEEechh--hhhHHHHHHHHHHHhccccceEEEEEcCC
Confidence 35678999999999 55666655555554433445666665443
No 311
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=94.94 E-value=0.12 Score=61.73 Aligned_cols=37 Identities=19% Similarity=0.040 Sum_probs=23.2
Q ss_pred CeEEEEecCCCchHHHHHHHHHHhccc-CCCEEEEEcc
Q 001722 339 QVVVVVGETGSGKTTQLTQYLLEDGYT-TNGIVGCTQP 375 (1020)
Q Consensus 339 q~vII~gpTGSGKTtqi~q~Lle~~~~-~~~~Il~tqP 375 (1020)
+.++|.||+|+|||+.+-.+..+.... .+.+|+++..
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~ 168 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITS 168 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEH
Confidence 458999999999998764333222111 1346777653
No 312
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=94.94 E-value=0.057 Score=61.09 Aligned_cols=50 Identities=30% Similarity=0.316 Sum_probs=35.0
Q ss_pred HHHHHHHHhCCeEEEEecCCCchHHHHHHHHHHhccc--CCCEEEEEcccHHH
Q 001722 329 DELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYT--TNGIVGCTQPRRVA 379 (1020)
Q Consensus 329 ~eil~~i~~~q~vII~gpTGSGKTtqi~q~Lle~~~~--~~~~Il~tqPrR~l 379 (1020)
..+..++..+.+++|+|+|||||||.+-..+ ..... ...+|+++.-..++
T Consensus 123 ~~L~~~v~~~~~ilI~G~tGSGKTTll~al~-~~i~~~~~~~ri~tiEd~~El 174 (299)
T TIGR02782 123 DVLREAVLARKNILVVGGTGSGKTTLANALL-AEIAKNDPTDRVVIIEDTREL 174 (299)
T ss_pred HHHHHHHHcCCeEEEECCCCCCHHHHHHHHH-HHhhccCCCceEEEECCchhh
Confidence 3455567778899999999999999875433 33221 24578888776655
No 313
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=94.91 E-value=0.07 Score=57.84 Aligned_cols=39 Identities=18% Similarity=0.250 Sum_probs=30.1
Q ss_pred HHhCCeEEEEecCCCchHHHHHHHHHHhcccCCCEEEEEc
Q 001722 335 IRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQ 374 (1020)
Q Consensus 335 i~~~q~vII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tq 374 (1020)
+..+..++|.|++|||||+.+.+++++... .+.+++++.
T Consensus 22 ~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~-~g~~~~y~~ 60 (234)
T PRK06067 22 IPFPSLILIEGDHGTGKSVLSQQFVYGALK-QGKKVYVIT 60 (234)
T ss_pred CcCCcEEEEECCCCCChHHHHHHHHHHHHh-CCCEEEEEE
Confidence 345789999999999999999998877543 355666653
No 314
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=94.90 E-value=0.095 Score=54.71 Aligned_cols=119 Identities=21% Similarity=0.292 Sum_probs=63.5
Q ss_pred HHhCCeEEEEecCCCchHHHHHHHHHHhcc---cC------CCEEEEEcccHHHHHHHHHHHHHHhccccCCEEEEEEee
Q 001722 335 IRENQVVVVVGETGSGKTTQLTQYLLEDGY---TT------NGIVGCTQPRRVAAMSVAKRVSEEMDTELGDKVGYAIRF 405 (1020)
Q Consensus 335 i~~~q~vII~gpTGSGKTtqi~q~Lle~~~---~~------~~~Il~tqPrR~lA~qva~rva~e~~~~lG~~VGy~ir~ 405 (1020)
+..+..+.|+||.||||||.+-..+...+. .. ...++++ +- . .+.+.++. +..
T Consensus 18 i~~G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~-~q-------~-~~l~~~~L--~~~------- 79 (176)
T cd03238 18 IPLNVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFI-DQ-------L-QFLIDVGL--GYL------- 79 (176)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEE-hH-------H-HHHHHcCC--Ccc-------
Confidence 457889999999999999988554322110 00 0012222 11 1 11122221 000
Q ss_pred eecCCCCccEEEEchHHHHHHHhcCCCCCC--ccEEEEeCCCcCCCCcc---HHHHHHHHHHhhcCCceEEEEeccCC
Q 001722 406 EDVTGPSTLIKYMTDGVLLRETLKDSDLDK--YRVIVMDEAHERSLSTD---VLFGILKKVVARRRDFKLIVTSATLN 478 (1020)
Q Consensus 406 e~~~s~~t~I~~~T~g~LLr~ll~d~~L~~--~s~IIIDEaHERs~~tD---~ll~lLk~il~~r~~lklIlmSATld 478 (1020)
.....+.-.+.|+..+..+....+.+ .+++|+||.= .+++.. .+..+++.+.. ....+|+.|.-++
T Consensus 80 ----~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt-~~LD~~~~~~l~~~l~~~~~--~g~tvIivSH~~~ 150 (176)
T cd03238 80 ----TLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPS-TGLHQQDINQLLEVIKGLID--LGNTVILIEHNLD 150 (176)
T ss_pred ----ccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHHh--CCCEEEEEeCCHH
Confidence 01223334566776665555555667 8899999975 445443 44555555432 3566777776653
No 315
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=94.85 E-value=0.13 Score=60.54 Aligned_cols=35 Identities=23% Similarity=0.239 Sum_probs=23.1
Q ss_pred CeEEEEecCCCchHHHHHHHHHHhcccC--CCEEEEEc
Q 001722 339 QVVVVVGETGSGKTTQLTQYLLEDGYTT--NGIVGCTQ 374 (1020)
Q Consensus 339 q~vII~gpTGSGKTtqi~q~Lle~~~~~--~~~Il~tq 374 (1020)
..++|.|++|+|||+.+- .+....... +..++++.
T Consensus 137 n~l~l~G~~G~GKThL~~-ai~~~l~~~~~~~~v~yi~ 173 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLH-AIGNEILENNPNAKVVYVS 173 (405)
T ss_pred CeEEEECCCCCcHHHHHH-HHHHHHHHhCCCCcEEEEE
Confidence 468999999999999873 344333322 34666664
No 316
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=94.82 E-value=0.12 Score=59.68 Aligned_cols=21 Identities=33% Similarity=0.510 Sum_probs=17.6
Q ss_pred CeEEEEecCCCchHHHHHHHH
Q 001722 339 QVVVVVGETGSGKTTQLTQYL 359 (1020)
Q Consensus 339 q~vII~gpTGSGKTtqi~q~L 359 (1020)
.+++|+||+|+|||+.+-.++
T Consensus 41 ~~i~I~G~~GtGKT~l~~~~~ 61 (365)
T TIGR02928 41 SNVFIYGKTGTGKTAVTKYVM 61 (365)
T ss_pred CcEEEECCCCCCHHHHHHHHH
Confidence 689999999999999875444
No 317
>PRK11054 helD DNA helicase IV; Provisional
Probab=94.81 E-value=0.065 Score=67.19 Aligned_cols=78 Identities=22% Similarity=0.279 Sum_probs=58.4
Q ss_pred HHHHHHHcCCCcHHHHHHHHHHHHhCCeEEEEecCCCchHHHHHH---HHHHhcccCCCEEEEEcccHHHHHHHHHHHHH
Q 001722 313 KTLAEQRQYLPIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQ---YLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSE 389 (1020)
Q Consensus 313 ~~l~~~R~~LPi~~~q~eil~~i~~~q~vII~gpTGSGKTtqi~q---~Lle~~~~~~~~Il~tqPrR~lA~qva~rva~ 389 (1020)
....++=++-|+.+.|.+++.. ....++|.|..|||||+.+.. +|+..+...+..|+++..++.+|..+..|+..
T Consensus 186 ~~~f~~~e~~~L~~~Q~~av~~--~~~~~lV~agaGSGKT~vl~~r~ayLl~~~~~~~~~IL~ltft~~AA~em~eRL~~ 263 (684)
T PRK11054 186 ADFFSQVESSPLNPSQARAVVN--GEDSLLVLAGAGSGKTSVLVARAGWLLARGQAQPEQILLLAFGRQAAEEMDERIRE 263 (684)
T ss_pred HHHHHhccCCCCCHHHHHHHhC--CCCCeEEEEeCCCCHHHHHHHHHHHHHHhCCCCHHHeEEEeccHHHHHHHHHHHHH
Confidence 3444445568899999888754 345678999999999998644 44554434456899999999999999999976
Q ss_pred Hhc
Q 001722 390 EMD 392 (1020)
Q Consensus 390 e~~ 392 (1020)
.+|
T Consensus 264 ~lg 266 (684)
T PRK11054 264 RLG 266 (684)
T ss_pred hcC
Confidence 543
No 318
>PLN03025 replication factor C subunit; Provisional
Probab=94.81 E-value=0.2 Score=57.17 Aligned_cols=23 Identities=30% Similarity=0.499 Sum_probs=18.3
Q ss_pred CeEEEEecCCCchHHHHHHHHHH
Q 001722 339 QVVVVVGETGSGKTTQLTQYLLE 361 (1020)
Q Consensus 339 q~vII~gpTGSGKTtqi~q~Lle 361 (1020)
.++++.||+|+||||.+-.++.+
T Consensus 35 ~~lll~Gp~G~GKTtla~~la~~ 57 (319)
T PLN03025 35 PNLILSGPPGTGKTTSILALAHE 57 (319)
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999987554433
No 319
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=94.81 E-value=0.18 Score=63.12 Aligned_cols=47 Identities=23% Similarity=0.422 Sum_probs=28.3
Q ss_pred HHHHHhcCCCCCCccEEEEeCCCcCCCCccHHHHHHHHHHhhcCC-ceEEE
Q 001722 423 LLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRD-FKLIV 472 (1020)
Q Consensus 423 LLr~ll~d~~L~~~s~IIIDEaHERs~~tD~ll~lLk~il~~r~~-lklIl 472 (1020)
|...+...|....+.++||||||. +.....-.+|+.+ ...|+ ..+|+
T Consensus 106 Lie~~~~~P~~g~~KV~IIDEa~~--LT~~A~NALLKtL-EEPP~~tifIL 153 (725)
T PRK07133 106 LIENVKNLPTQSKYKIYIIDEVHM--LSKSAFNALLKTL-EEPPKHVIFIL 153 (725)
T ss_pred HHHHHHhchhcCCCEEEEEEChhh--CCHHHHHHHHHHh-hcCCCceEEEE
Confidence 444444557778999999999994 3444444555554 33333 33343
No 320
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=94.78 E-value=0.23 Score=67.60 Aligned_cols=126 Identities=17% Similarity=0.129 Sum_probs=75.8
Q ss_pred CCCcHHHHHHHHHHHHh--CCeEEEEecCCCchHHHHHHHH--HHhc-ccCCCEEEEEcccHHHHHHHHHHHHHHhcccc
Q 001722 321 YLPIFSVRDELLQVIRE--NQVVVVVGETGSGKTTQLTQYL--LEDG-YTTNGIVGCTQPRRVAAMSVAKRVSEEMDTEL 395 (1020)
Q Consensus 321 ~LPi~~~q~eil~~i~~--~q~vII~gpTGSGKTtqi~q~L--le~~-~~~~~~Il~tqPrR~lA~qva~rva~e~~~~l 395 (1020)
...+.+-|.+.+..+.. +++++|.|..|+||||.+-..+ ++.. ...+..|+.+.|+--+|..+. + .|..
T Consensus 965 ~~~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~l~~v~~~~~~l~~~~~~~V~glAPTgrAAk~L~----e-~Gi~- 1038 (1747)
T PRK13709 965 MEGLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQFRAVMSAVNTLPESERPRVVGLGPTHRAVGEMR----S-AGVD- 1038 (1747)
T ss_pred cCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhhcccCceEEEECCcHHHHHHHH----h-cCcc-
Confidence 34578889999999887 4799999999999999864322 2221 122346888899987775432 1 1110
Q ss_pred CCEEEEEEeeeecCCCCccEEEEchHHHHHHH-----hcCCCCCCccEEEEeCCCcCCCCccHHHHHHHHHHhhcCCceE
Q 001722 396 GDKVGYAIRFEDVTGPSTLIKYMTDGVLLRET-----LKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKL 470 (1020)
Q Consensus 396 G~~VGy~ir~e~~~s~~t~I~~~T~g~LLr~l-----l~d~~L~~~s~IIIDEaHERs~~tD~ll~lLk~il~~r~~lkl 470 (1020)
-.|-..||... ..+......++|||||+= ++++..+..+++.+. ..+.|+
T Consensus 1039 ---------------------A~TI~s~L~~~~~~~~~~~~~~~~~~llIVDEaS--Mv~~~~m~~Ll~~~~--~~garv 1093 (1747)
T PRK13709 1039 ---------------------AQTLASFLHDTQLQQRSGETPDFSNTLFLLDESS--MVGNTDMARAYALIA--AGGGRA 1093 (1747)
T ss_pred ---------------------hhhHHHHhcccccccccccCCCCCCcEEEEEccc--cccHHHHHHHHHhhh--cCCCEE
Confidence 11222222111 011122345899999997 566666666665543 235788
Q ss_pred EEEeccC
Q 001722 471 IVTSATL 477 (1020)
Q Consensus 471 IlmSATl 477 (1020)
|++.=+-
T Consensus 1094 VLVGD~~ 1100 (1747)
T PRK13709 1094 VSSGDTD 1100 (1747)
T ss_pred EEecchH
Confidence 8776443
No 321
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.74 E-value=0.075 Score=54.87 Aligned_cols=126 Identities=17% Similarity=0.293 Sum_probs=65.3
Q ss_pred HHhCCeEEEEecCCCchHHHHHHHHHHhcccCCCEEEEE-cccHHHHHHHHHHHHHHhccccCCEEEEEEeeeecCCCCc
Q 001722 335 IRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCT-QPRRVAAMSVAKRVSEEMDTELGDKVGYAIRFEDVTGPST 413 (1020)
Q Consensus 335 i~~~q~vII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~t-qPrR~lA~qva~rva~e~~~~lG~~VGy~ir~e~~~s~~t 413 (1020)
+..++.+.|+|+.||||||.+-. |.-......|.|.+- .+.... . ..+ ...++|...........+
T Consensus 23 i~~Ge~~~i~G~nGsGKStLl~~-l~G~~~~~~G~i~~~g~~~~~~--~--~~~--------~~~i~~~~q~~~~~~~~t 89 (173)
T cd03230 23 VEKGEIYGLLGPNGAGKTTLIKI-ILGLLKPDSGEIKVLGKDIKKE--P--EEV--------KRRIGYLPEEPSLYENLT 89 (173)
T ss_pred EcCCcEEEEECCCCCCHHHHHHH-HhCCCCCCCeEEEECCEEcccc--h--Hhh--------hccEEEEecCCccccCCc
Confidence 35789999999999999997644 332211224555431 111100 0 111 123454322111111101
Q ss_pred c--EEEEchHHHHHHHhcCCCCCCccEEEEeCCCcCCCCcc---HHHHHHHHHHhhcCCceEEEEecc
Q 001722 414 L--IKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTD---VLFGILKKVVARRRDFKLIVTSAT 476 (1020)
Q Consensus 414 ~--I~~~T~g~LLr~ll~d~~L~~~s~IIIDEaHERs~~tD---~ll~lLk~il~~r~~lklIlmSAT 476 (1020)
. .+..+.|+..+..+......+..++|+||-- .+++.+ .+..+|+.+... ...+|+.|.-
T Consensus 90 v~~~~~LS~G~~qrv~laral~~~p~illlDEPt-~~LD~~~~~~l~~~l~~~~~~--g~tiii~th~ 154 (173)
T cd03230 90 VRENLKLSGGMKQRLALAQALLHDPELLILDEPT-SGLDPESRREFWELLRELKKE--GKTILLSSHI 154 (173)
T ss_pred HHHHhhcCHHHHHHHHHHHHHHcCCCEEEEeCCc-cCCCHHHHHHHHHHHHHHHHC--CCEEEEECCC
Confidence 0 0116777776665555556778999999977 455554 444555554332 3456666554
No 322
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=94.74 E-value=0.14 Score=53.89 Aligned_cols=117 Identities=21% Similarity=0.171 Sum_probs=65.0
Q ss_pred CCeEEEEecCCCchHHHHHHHHHHhcccCCCEEEEEcccHHHHHHHHHHHHHHhccccCC-EEEEEEeeeecCCCCccEE
Q 001722 338 NQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELGD-KVGYAIRFEDVTGPSTLIK 416 (1020)
Q Consensus 338 ~q~vII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~lA~qva~rva~e~~~~lG~-~VGy~ir~e~~~s~~t~I~ 416 (1020)
++..+++||-.||||+-+++-+....+. +.+|++.-|.- +...+. .|.-. ......-+.
T Consensus 4 g~l~~i~gpM~SGKT~eLl~r~~~~~~~-g~~v~vfkp~i--------------D~R~~~~~V~Sr-----~G~~~~A~~ 63 (201)
T COG1435 4 GWLEFIYGPMFSGKTEELLRRARRYKEA-GMKVLVFKPAI--------------DTRYGVGKVSSR-----IGLSSEAVV 63 (201)
T ss_pred EEEEEEEccCcCcchHHHHHHHHHHHHc-CCeEEEEeccc--------------ccccccceeeec-----cCCccccee
Confidence 5678999999999999998877765544 55677776721 111111 11100 001112233
Q ss_pred EEchHHHHHHHhcCCCCCCccEEEEeCCCcCCCCccHHHHHHHHHHhhcCCceEEEEeccCCHH
Q 001722 417 YMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTSATLNAQ 480 (1020)
Q Consensus 417 ~~T~g~LLr~ll~d~~L~~~s~IIIDEaHERs~~tD~ll~lLk~il~~r~~lklIlmSATld~~ 480 (1020)
+-.+.-+...+........+++|.||||+- ..+-+...|.++... +-+-++-+.++.+
T Consensus 64 i~~~~~i~~~i~~~~~~~~~~~v~IDEaQF---~~~~~v~~l~~lad~---lgi~Vi~~GL~~D 121 (201)
T COG1435 64 IPSDTDIFDEIAALHEKPPVDCVLIDEAQF---FDEELVYVLNELADR---LGIPVICYGLDTD 121 (201)
T ss_pred cCChHHHHHHHHhcccCCCcCEEEEehhHh---CCHHHHHHHHHHHhh---cCCEEEEeccccc
Confidence 345555666665544444589999999993 222344445554332 2344455666543
No 323
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.73 E-value=0.19 Score=62.08 Aligned_cols=30 Identities=27% Similarity=0.347 Sum_probs=21.6
Q ss_pred HHHHHHhCC---eEEEEecCCCchHHHHHHHHH
Q 001722 331 LLQVIRENQ---VVVVVGETGSGKTTQLTQYLL 360 (1020)
Q Consensus 331 il~~i~~~q---~vII~gpTGSGKTtqi~q~Ll 360 (1020)
+...+..++ .+|++||.|+||||.+-.++.
T Consensus 28 L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~ 60 (585)
T PRK14950 28 LRNAIAEGRVAHAYLFTGPRGVGKTSTARILAK 60 (585)
T ss_pred HHHHHHhCCCceEEEEECCCCCCHHHHHHHHHH
Confidence 444555553 458999999999998766543
No 324
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=94.71 E-value=0.048 Score=60.09 Aligned_cols=60 Identities=12% Similarity=0.222 Sum_probs=33.2
Q ss_pred EchHHHHHHHhcCCCCCCccEEEEeCCC--cCCCCccHHHHHHHHHHhhcCCceEEEEeccCC
Q 001722 418 MTDGVLLRETLKDSDLDKYRVIVMDEAH--ERSLSTDVLFGILKKVVARRRDFKLIVTSATLN 478 (1020)
Q Consensus 418 ~T~g~LLr~ll~d~~L~~~s~IIIDEaH--ERs~~tD~ll~lLk~il~~r~~lklIlmSATld 478 (1020)
.+.|...+.++......+-.++++||=- -.-.+..-++.+++++... .+.-+|+...-+|
T Consensus 139 LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~-~~~tvv~vlHDlN 200 (258)
T COG1120 139 LSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNRE-KGLTVVMVLHDLN 200 (258)
T ss_pred cChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHh-cCCEEEEEecCHH
Confidence 3344444444444446778999999944 2222333466667766533 3455666555443
No 325
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=94.70 E-value=0.053 Score=61.90 Aligned_cols=48 Identities=21% Similarity=0.237 Sum_probs=33.4
Q ss_pred HHHHHHhCCeEEEEecCCCchHHHHHHHHHHhcc--cCCCEEEEEcccHHH
Q 001722 331 LLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGY--TTNGIVGCTQPRRVA 379 (1020)
Q Consensus 331 il~~i~~~q~vII~gpTGSGKTtqi~q~Lle~~~--~~~~~Il~tqPrR~l 379 (1020)
+..++..+.+++|+|+|||||||.+-. |+.... ....+|+++....++
T Consensus 137 L~~~v~~~~nilI~G~tGSGKTTll~a-L~~~i~~~~~~~rivtiEd~~El 186 (323)
T PRK13833 137 IRSAIDSRLNIVISGGTGSGKTTLANA-VIAEIVASAPEDRLVILEDTAEI 186 (323)
T ss_pred HHHHHHcCCeEEEECCCCCCHHHHHHH-HHHHHhcCCCCceEEEecCCccc
Confidence 455667788999999999999998744 444332 124577777765554
No 326
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.68 E-value=0.11 Score=62.68 Aligned_cols=37 Identities=30% Similarity=0.436 Sum_probs=23.3
Q ss_pred HHHHHhcCCCCCCccEEEEeCCCcCCCCccHHHHHHHHH
Q 001722 423 LLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKV 461 (1020)
Q Consensus 423 LLr~ll~d~~L~~~s~IIIDEaHERs~~tD~ll~lLk~i 461 (1020)
+...+...|...++.++||||||. +..+..-.+++.+
T Consensus 107 I~~~~~~~P~~~~~KVvIIDEad~--Lt~~a~naLLk~L 143 (486)
T PRK14953 107 LRDAVSYTPIKGKYKVYIIDEAHM--LTKEAFNALLKTL 143 (486)
T ss_pred HHHHHHhCcccCCeeEEEEEChhh--cCHHHHHHHHHHH
Confidence 334444557778999999999994 3333334444444
No 327
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=94.68 E-value=0.2 Score=58.44 Aligned_cols=131 Identities=23% Similarity=0.384 Sum_probs=80.5
Q ss_pred CeEEEEecCCCchHHHHHH---HHHHhcccCCCEEEEEcccHHHHHHHHHHHHHHhccccCCEEEEEEeeeecCCCCccE
Q 001722 339 QVVVVVGETGSGKTTQLTQ---YLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELGDKVGYAIRFEDVTGPSTLI 415 (1020)
Q Consensus 339 q~vII~gpTGSGKTtqi~q---~Lle~~~~~~~~Il~tqPrR~lA~qva~rva~e~~~~lG~~VGy~ir~e~~~s~~t~I 415 (1020)
.+++++|=-||||||.+.. |+... .....++++=..|.+|..+.+.+++..+..+ |.. ......+
T Consensus 101 ~vImmvGLQGsGKTTt~~KLA~~lkk~--~~kvllVaaD~~RpAA~eQL~~La~q~~v~~-----f~~-----~~~~~Pv 168 (451)
T COG0541 101 TVILMVGLQGSGKTTTAGKLAKYLKKK--GKKVLLVAADTYRPAAIEQLKQLAEQVGVPF-----FGS-----GTEKDPV 168 (451)
T ss_pred eEEEEEeccCCChHhHHHHHHHHHHHc--CCceEEEecccCChHHHHHHHHHHHHcCCce-----ecC-----CCCCCHH
Confidence 4678899999999998544 44432 1122455566889999999988887655431 111 1111122
Q ss_pred EEEchHHHHHHHhcCCCCCCccEEEEeCCCcCCCCccHHHHHHHHHH-hhcCCceEEEEeccC--CHHHHHHHhCC
Q 001722 416 KYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVV-ARRRDFKLIVTSATL--NAQKFSDFFGS 488 (1020)
Q Consensus 416 ~~~T~g~LLr~ll~d~~L~~~s~IIIDEaHERs~~tD~ll~lLk~il-~~r~~lklIlmSATl--d~~~f~~~f~~ 488 (1020)
. +.+.-+.......+++||||=|-...++.+ |+.-++.+- ..+|+=.++++-|++ ++...+.-|+.
T Consensus 169 ~------Iak~al~~ak~~~~DvvIvDTAGRl~ide~-Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~A~aF~e 237 (451)
T COG0541 169 E------IAKAALEKAKEEGYDVVIVDTAGRLHIDEE-LMDELKEIKEVINPDETLLVVDAMIGQDAVNTAKAFNE 237 (451)
T ss_pred H------HHHHHHHHHHHcCCCEEEEeCCCcccccHH-HHHHHHHHHhhcCCCeEEEEEecccchHHHHHHHHHhh
Confidence 2 222222223356789999999995455444 444444443 457888888888888 66666666653
No 328
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.66 E-value=0.094 Score=64.64 Aligned_cols=49 Identities=22% Similarity=0.375 Sum_probs=28.4
Q ss_pred HHHHhcCCCCCCccEEEEeCCCcCCCCccHHHHHHHHHHhhcCCceEEEEe
Q 001722 424 LRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTS 474 (1020)
Q Consensus 424 Lr~ll~d~~L~~~s~IIIDEaHERs~~tD~ll~lLk~il~~r~~lklIlmS 474 (1020)
...+...|...++.++||||+|. ++.+-.-.+++.+-.-.+...+|+.+
T Consensus 108 ~~~~~~~p~~~~~KVvIIdev~~--Lt~~a~naLLk~LEepp~~~~fIl~t 156 (576)
T PRK14965 108 RENVKYLPSRSRYKIFIIDEVHM--LSTNAFNALLKTLEEPPPHVKFIFAT 156 (576)
T ss_pred HHHHHhccccCCceEEEEEChhh--CCHHHHHHHHHHHHcCCCCeEEEEEe
Confidence 33344456778999999999994 33444444444443333345555543
No 329
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=94.65 E-value=0.039 Score=60.01 Aligned_cols=39 Identities=13% Similarity=0.164 Sum_probs=29.1
Q ss_pred HHhCCeEEEEecCCCchHHHHHHHHHHhcccCCCEEEEEc
Q 001722 335 IRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQ 374 (1020)
Q Consensus 335 i~~~q~vII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tq 374 (1020)
+..+..++|.|++||||||.+.+++.... .++.+++++.
T Consensus 21 i~~g~~~~i~G~~G~GKTtl~~~~~~~~~-~~g~~~~yi~ 59 (230)
T PRK08533 21 IPAGSLILIEGDESTGKSILSQRLAYGFL-QNGYSVSYVS 59 (230)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHH-hCCCcEEEEe
Confidence 45688999999999999999888877643 3344555543
No 330
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=94.64 E-value=0.16 Score=57.70 Aligned_cols=43 Identities=26% Similarity=0.384 Sum_probs=29.3
Q ss_pred HHHHHhCCeEEEEecCCCchHHHHHHHHHHhcccCCCEEEEEccc
Q 001722 332 LQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPR 376 (1020)
Q Consensus 332 l~~i~~~q~vII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPr 376 (1020)
--++..+.+++|+|+|||||||.+-. |+.. +....+++++...
T Consensus 138 ~~~v~~~~~ili~G~tGsGKTTll~a-l~~~-~~~~~~iv~ied~ 180 (308)
T TIGR02788 138 RLAIASRKNIIISGGTGSGKTTFLKS-LVDE-IPKDERIITIEDT 180 (308)
T ss_pred HHHhhCCCEEEEECCCCCCHHHHHHH-HHcc-CCccccEEEEcCc
Confidence 34567889999999999999998744 3333 2233456666543
No 331
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=94.64 E-value=0.69 Score=58.20 Aligned_cols=118 Identities=24% Similarity=0.355 Sum_probs=59.9
Q ss_pred CeEEEEecCCCchHHHHHHHHHHhcccCCC-EEEEEcccHHHHHHHHHHHHHHhccccCCEEEEEEeeeecCCCCccEEE
Q 001722 339 QVVVVVGETGSGKTTQLTQYLLEDGYTTNG-IVGCTQPRRVAAMSVAKRVSEEMDTELGDKVGYAIRFEDVTGPSTLIKY 417 (1020)
Q Consensus 339 q~vII~gpTGSGKTtqi~q~Lle~~~~~~~-~Il~tqPrR~lA~qva~rva~e~~~~lG~~VGy~ir~e~~~s~~t~I~~ 417 (1020)
.+.+..||||.|||..+-+ |.+..+.... .|-+=-. --+-...|++..|.+.| .|||.-
T Consensus 522 gsFlF~GPTGVGKTELAka-LA~~Lfg~e~aliR~DMS----Ey~EkHsVSrLIGaPPG-YVGyee-------------- 581 (786)
T COG0542 522 GSFLFLGPTGVGKTELAKA-LAEALFGDEQALIRIDMS----EYMEKHSVSRLIGAPPG-YVGYEE-------------- 581 (786)
T ss_pred eEEEeeCCCcccHHHHHHH-HHHHhcCCCccceeechH----HHHHHHHHHHHhCCCCC-Cceecc--------------
Confidence 3688899999999987644 4454443222 2222000 00112235555555544 566632
Q ss_pred EchHHHHHHHhcCCCCCCccEEEEeCCCcCCCCccHHHHHHHHHHhhc---------CCc--eEEEEeccCCHHHHHHH
Q 001722 418 MTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARR---------RDF--KLIVTSATLNAQKFSDF 485 (1020)
Q Consensus 418 ~T~g~LLr~ll~d~~L~~~s~IIIDEaHERs~~tD~ll~lLk~il~~r---------~~l--klIlmSATld~~~f~~~ 485 (1020)
.|.|....... .|++|.+||+- -.+.|++- +|-+++..- -++ -||+||.-+-.+.+.+.
T Consensus 582 --GG~LTEaVRr~----PySViLlDEIE--KAHpdV~n-ilLQVlDdGrLTD~~Gr~VdFrNtiIImTSN~Gs~~i~~~ 651 (786)
T COG0542 582 --GGQLTEAVRRK----PYSVILLDEIE--KAHPDVFN-LLLQVLDDGRLTDGQGRTVDFRNTIIIMTSNAGSEEILRD 651 (786)
T ss_pred --ccchhHhhhcC----CCeEEEechhh--hcCHHHHH-HHHHHhcCCeeecCCCCEEecceeEEEEecccchHHHHhh
Confidence 23343333333 48999999954 23344432 222332210 011 47777777766655554
No 332
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=94.64 E-value=0.34 Score=59.52 Aligned_cols=158 Identities=20% Similarity=0.273 Sum_probs=93.7
Q ss_pred HHHHHHcCCCcHHHHHHHHHHHHhCCeEEEEecCCCchHHHHHHHHHHhcc-cCCCEEEEEcccHHHHHHHHHHHHHHhc
Q 001722 314 TLAEQRQYLPIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGY-TTNGIVGCTQPRRVAAMSVAKRVSEEMD 392 (1020)
Q Consensus 314 ~l~~~R~~LPi~~~q~eil~~i~~~q~vII~gpTGSGKTtqi~q~Lle~~~-~~~~~Il~tqPrR~lA~qva~rva~e~~ 392 (1020)
.++..--.+|.+ -+.+++... .+-.++..|==.|||+.+...+.-... -.+-+|+++.|.+-.+..+.+++...+.
T Consensus 233 ~~lk~~Fdi~~~--s~~~~~~fk-qk~tVflVPRR~GKTwivv~iI~~ll~s~~Gi~IgytAH~~~ts~~vF~eI~~~le 309 (738)
T PHA03368 233 RFLRTVFNTPLF--SDAAVRHFR-QRATVFLVPRRHGKTWFLVPLIALALATFRGIKIGYTAHIRKATEPVFEEIGARLR 309 (738)
T ss_pred HHHHHHcCCccc--cHHHHHHhh-ccceEEEecccCCchhhHHHHHHHHHHhCCCCEEEEEcCcHHHHHHHHHHHHHHHh
Confidence 334433444444 355666554 456778888999999976532222221 2366899999999999999998876543
Q ss_pred cccC-CEE----E--EEEeeeecCCCCccEEEEchHHHHHHHhcCCC--CCCccEEEEeCCCcCCCCccHHHHHHHHHHh
Q 001722 393 TELG-DKV----G--YAIRFEDVTGPSTLIKYMTDGVLLRETLKDSD--LDKYRVIVMDEAHERSLSTDVLFGILKKVVA 463 (1020)
Q Consensus 393 ~~lG-~~V----G--y~ir~e~~~s~~t~I~~~T~g~LLr~ll~d~~--L~~~s~IIIDEaHERs~~tD~ll~lLk~il~ 463 (1020)
...+ ..+ | +.+.|.+ .....|.|.+. .++.. =..++++|||||+. +..+.+..+|--+..
T Consensus 310 ~~f~~~~v~~vkGe~I~i~f~n--G~kstI~FaSa-------rntNsiRGqtfDLLIVDEAqF--Ik~~al~~ilp~l~~ 378 (738)
T PHA03368 310 QWFGASRVDHVKGETISFSFPD--GSRSTIVFASS-------HNTNGIRGQDFNLLFVDEANF--IRPDAVQTIMGFLNQ 378 (738)
T ss_pred hhcchhheeeecCcEEEEEecC--CCccEEEEEec-------cCCCCccCCcccEEEEechhh--CCHHHHHHHHHHHhc
Confidence 2111 111 1 1112221 11235556532 11111 23789999999995 444666666644433
Q ss_pred hcCCceEEEEeccCCHHHHHHHhC
Q 001722 464 RRRDFKLIVTSATLNAQKFSDFFG 487 (1020)
Q Consensus 464 ~r~~lklIlmSATld~~~f~~~f~ 487 (1020)
. +.++|.+|.|-..+.-..|+.
T Consensus 379 ~--n~k~I~ISS~Ns~~~sTSFL~ 400 (738)
T PHA03368 379 T--NCKIIFVSSTNTGKASTSFLY 400 (738)
T ss_pred c--CccEEEEecCCCCccchHHHH
Confidence 3 889999999986665555554
No 333
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=94.56 E-value=0.29 Score=56.95 Aligned_cols=53 Identities=15% Similarity=0.180 Sum_probs=34.0
Q ss_pred HHHHHhcCCCCCCccEEEEeCCCcCCCCccHHHHHHHHHHhhcCCceEEEEeccC
Q 001722 423 LLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTSATL 477 (1020)
Q Consensus 423 LLr~ll~d~~L~~~s~IIIDEaHERs~~tD~ll~lLk~il~~r~~lklIlmSATl 477 (1020)
+...+...+....+.+|||||+| .++....-.+||.+-.-.+...+|++|...
T Consensus 129 l~~~~~~~~~~~~~kVviIDead--~m~~~aanaLLK~LEepp~~~~~IL~t~~~ 181 (365)
T PRK07471 129 LISFFGLTAAEGGWRVVIVDTAD--EMNANAANALLKVLEEPPARSLFLLVSHAP 181 (365)
T ss_pred HHHHhCcCcccCCCEEEEEechH--hcCHHHHHHHHHHHhcCCCCeEEEEEECCc
Confidence 44444445667789999999999 345556666676664433455566666554
No 334
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=94.54 E-value=0.19 Score=59.03 Aligned_cols=51 Identities=18% Similarity=0.321 Sum_probs=29.3
Q ss_pred HHHHHhcCCCCCCccEEEEeCCCcCCCCccHHHHHHHHHHhhcCCceEEEEecc
Q 001722 423 LLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTSAT 476 (1020)
Q Consensus 423 LLr~ll~d~~L~~~s~IIIDEaHERs~~tD~ll~lLk~il~~r~~lklIlmSAT 476 (1020)
+...+...|...++.++||||+|. ++....-.+|+.+ ...++-.++++.||
T Consensus 105 l~~~~~~~p~~~~~kViiIDead~--m~~~aanaLLk~L-Eep~~~~~fIL~a~ 155 (394)
T PRK07940 105 LVTIAARRPSTGRWRIVVIEDADR--LTERAANALLKAV-EEPPPRTVWLLCAP 155 (394)
T ss_pred HHHHHHhCcccCCcEEEEEechhh--cCHHHHHHHHHHh-hcCCCCCeEEEEEC
Confidence 334444456677899999999994 3333344455544 44344444555444
No 335
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=94.48 E-value=0.15 Score=60.90 Aligned_cols=36 Identities=19% Similarity=0.293 Sum_probs=23.9
Q ss_pred CeEEEEecCCCchHHHHHHHHHHhcccCCCEEEEEcc
Q 001722 339 QVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQP 375 (1020)
Q Consensus 339 q~vII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqP 375 (1020)
+.++|.||+|+|||+.+-. +.......+.+++++..
T Consensus 142 npl~L~G~~G~GKTHLl~A-i~~~l~~~~~~v~yi~~ 177 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQA-AVHALRESGGKILYVRS 177 (445)
T ss_pred ceEEEEcCCCCCHHHHHHH-HHHHHHHcCCCEEEeeH
Confidence 4689999999999987643 33333333556777653
No 336
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=94.47 E-value=0.2 Score=63.11 Aligned_cols=20 Identities=25% Similarity=0.557 Sum_probs=16.1
Q ss_pred eEEEEecCCCchHHHHHHHH
Q 001722 340 VVVVVGETGSGKTTQLTQYL 359 (1020)
Q Consensus 340 ~vII~gpTGSGKTtqi~q~L 359 (1020)
++.|.|+||+|||+.+-..+
T Consensus 783 vLYIyG~PGTGKTATVK~VL 802 (1164)
T PTZ00112 783 ILYISGMPGTGKTATVYSVI 802 (1164)
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 45699999999999875544
No 337
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=94.46 E-value=0.11 Score=63.62 Aligned_cols=29 Identities=28% Similarity=0.449 Sum_probs=20.9
Q ss_pred HHHHHHhC---CeEEEEecCCCchHHHHHHHH
Q 001722 331 LLQVIREN---QVVVVVGETGSGKTTQLTQYL 359 (1020)
Q Consensus 331 il~~i~~~---q~vII~gpTGSGKTtqi~q~L 359 (1020)
+..++..+ +.++++||.|+||||.+-.+.
T Consensus 28 L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lA 59 (605)
T PRK05896 28 LVNAILNNKLTHAYIFSGPRGIGKTSIAKIFA 59 (605)
T ss_pred HHHHHHcCCCCceEEEECCCCCCHHHHHHHHH
Confidence 44455454 457899999999999875543
No 338
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=94.35 E-value=0.32 Score=50.83 Aligned_cols=122 Identities=19% Similarity=0.234 Sum_probs=59.0
Q ss_pred eEEEEecCCCchHHHHHHHHHHhcccCCCEEEEEcccHHHHHHHHHHHHHHhccccCCEEEE-EEeeeec-----CCCCc
Q 001722 340 VVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELGDKVGY-AIRFEDV-----TGPST 413 (1020)
Q Consensus 340 ~vII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~lA~qva~rva~e~~~~lG~~VGy-~ir~e~~-----~s~~t 413 (1020)
..+|+||+|||||+.+-...+-.+ ++...+.....+.. . ..+ ...|...++ .+.|+.. ....+
T Consensus 24 ~~~i~G~NGsGKSnil~Ai~~~~~----~~~~~~~~~~~~~~--~----~~~-~~~~~~~~~v~~~f~~~~~~~~~~~~~ 92 (178)
T cd03239 24 FNAIVGPNGSGKSNIVDAICFVLG----GKAAKLRRGSLLFL--A----GGG-VKAGINSASVEITFDKSYFLVLQGKVE 92 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcC----cccccccCcchhhh--c----ccc-cCCCCceEEEEEEEECceEEecCCcCc
Confidence 788999999999998644333221 11111111111100 0 000 112222221 3334321 12334
Q ss_pred cEEEEchHHHHHHHhcCC----CCCCccEEEEeCCCcCCCCccHH---HHHHHHHHhhcCCceEEEEeccC
Q 001722 414 LIKYMTDGVLLRETLKDS----DLDKYRVIVMDEAHERSLSTDVL---FGILKKVVARRRDFKLIVTSATL 477 (1020)
Q Consensus 414 ~I~~~T~g~LLr~ll~d~----~L~~~s~IIIDEaHERs~~tD~l---l~lLk~il~~r~~lklIlmSATl 477 (1020)
.| .+.|+..+..+... .+.+.+++|+||.. .+++.... ..++..+.. .+..+|+.|.-+
T Consensus 93 ~~--LS~Ge~~r~~Laral~~~~~~~p~llilDEp~-~~LD~~~~~~i~~~L~~~~~--~g~tiIiiSH~~ 158 (178)
T cd03239 93 QI--LSGGEKSLSALALIFALQEIKPSPFYVLDEID-AALDPTNRRRVSDMIKEMAK--HTSQFIVITLKK 158 (178)
T ss_pred cc--CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCC-CCCCHHHHHHHHHHHHHHHh--CCCEEEEEECCH
Confidence 44 67776555433221 14577999999988 55655433 344444322 235677776654
No 339
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=94.31 E-value=0.57 Score=54.30 Aligned_cols=26 Identities=23% Similarity=0.429 Sum_probs=19.6
Q ss_pred HHHHhCC--eEEEEecCCCchHHHHHHH
Q 001722 333 QVIRENQ--VVVVVGETGSGKTTQLTQY 358 (1020)
Q Consensus 333 ~~i~~~q--~vII~gpTGSGKTtqi~q~ 358 (1020)
.+|..++ .+|+.||+|+||||.+-..
T Consensus 41 r~v~~~~l~SmIl~GPPG~GKTTlA~li 68 (436)
T COG2256 41 RAVEAGHLHSMILWGPPGTGKTTLARLI 68 (436)
T ss_pred HHHhcCCCceeEEECCCCCCHHHHHHHH
Confidence 3455443 6899999999999987543
No 340
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=94.31 E-value=0.3 Score=59.36 Aligned_cols=43 Identities=19% Similarity=0.487 Sum_probs=28.1
Q ss_pred CCCCCCccEEEEeCCCcCCCCccHHHHHHHHHHhhcCCceEEEEe
Q 001722 430 DSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTS 474 (1020)
Q Consensus 430 d~~L~~~s~IIIDEaHERs~~tD~ll~lLk~il~~r~~lklIlmS 474 (1020)
.|....+.+|||||||. +..+..-.+|+.+-.-.+...+|+.+
T Consensus 112 ~P~~~~~KVvIIDEad~--Lt~~A~NALLK~LEEpp~~t~FIL~t 154 (535)
T PRK08451 112 KPSMARFKIFIIDEVHM--LTKEAFNALLKTLEEPPSYVKFILAT 154 (535)
T ss_pred CcccCCeEEEEEECccc--CCHHHHHHHHHHHhhcCCceEEEEEE
Confidence 46678899999999994 44555555555554444455666654
No 341
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=94.31 E-value=0.16 Score=61.88 Aligned_cols=57 Identities=18% Similarity=0.258 Sum_probs=36.0
Q ss_pred EchHHHHHHHhcCCCCCCccEEEEeCCCcCCCCccHHHHHHHHHHhhcCCceEEEEec
Q 001722 418 MTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTSA 475 (1020)
Q Consensus 418 ~T~g~LLr~ll~d~~L~~~s~IIIDEaHERs~~tD~ll~lLk~il~~r~~lklIlmSA 475 (1020)
.+.|.-.|-.+....+.+..++|+||+= -+++.+.-..+.+.+....++.-+|+.|.
T Consensus 471 LSGGQrQRiaiARall~~~~iliLDE~T-SaLD~~te~~I~~~l~~~~~~~TvIiItH 527 (529)
T TIGR02868 471 LSGGERQRLALARALLADAPILLLDEPT-EHLDAGTESELLEDLLAALSGKTVVVITH 527 (529)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCc-ccCCHHHHHHHHHHHHHhcCCCEEEEEec
Confidence 4556666655555567888899999987 45565555555555554555656666553
No 342
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=94.30 E-value=0.12 Score=63.37 Aligned_cols=36 Identities=31% Similarity=0.433 Sum_probs=23.5
Q ss_pred HHHHhcCCCCCCccEEEEeCCCcCCCCccHHHHHHHHH
Q 001722 424 LRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKV 461 (1020)
Q Consensus 424 Lr~ll~d~~L~~~s~IIIDEaHERs~~tD~ll~lLk~i 461 (1020)
...+...|...++.++||||+|. +.....-.+|+.+
T Consensus 108 ~~~v~~~p~~~~~kViIIDE~~~--Lt~~a~naLLKtL 143 (559)
T PRK05563 108 RDKVKYAPSEAKYKVYIIDEVHM--LSTGAFNALLKTL 143 (559)
T ss_pred HHHHhhCcccCCeEEEEEECccc--CCHHHHHHHHHHh
Confidence 33344456788899999999994 3444444555543
No 343
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=94.26 E-value=0.31 Score=58.40 Aligned_cols=36 Identities=22% Similarity=0.162 Sum_probs=23.8
Q ss_pred CeEEEEecCCCchHHHHHHHHHHhcc--cCCCEEEEEcc
Q 001722 339 QVVVVVGETGSGKTTQLTQYLLEDGY--TTNGIVGCTQP 375 (1020)
Q Consensus 339 q~vII~gpTGSGKTtqi~q~Lle~~~--~~~~~Il~tqP 375 (1020)
..++|.|++|+|||+.+ +.+..... ..+.+|+|+.+
T Consensus 142 npl~i~G~~G~GKTHLl-~Ai~~~l~~~~~~~~v~yv~~ 179 (450)
T PRK14087 142 NPLFIYGESGMGKTHLL-KAAKNYIESNFSDLKVSYMSG 179 (450)
T ss_pred CceEEECCCCCcHHHHH-HHHHHHHHHhCCCCeEEEEEH
Confidence 45899999999999876 44444322 22456776654
No 344
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=94.25 E-value=0.34 Score=55.57 Aligned_cols=37 Identities=30% Similarity=0.491 Sum_probs=23.7
Q ss_pred HHHHHhcCCCCCCccEEEEeCCCcCCCCccHHHHHHHHH
Q 001722 423 LLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKV 461 (1020)
Q Consensus 423 LLr~ll~d~~L~~~s~IIIDEaHERs~~tD~ll~lLk~i 461 (1020)
++..+...|...+..+|||||||. +..+..-.+++.+
T Consensus 105 l~~~~~~~p~~~~~~vviidea~~--l~~~~~~~Ll~~l 141 (355)
T TIGR02397 105 ILDNVKYAPSSGKYKVYIIDEVHM--LSKSAFNALLKTL 141 (355)
T ss_pred HHHHHhcCcccCCceEEEEeChhh--cCHHHHHHHHHHH
Confidence 444555567778899999999994 3333344445544
No 345
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=94.24 E-value=0.078 Score=66.58 Aligned_cols=66 Identities=20% Similarity=0.354 Sum_probs=49.2
Q ss_pred cHHHHHHHHHHHHhCCeEEEEecCCCchHHHHHHHH---HHh-cccCCCEEEEEcccHHHHHHHHHHHHHHhc
Q 001722 324 IFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYL---LED-GYTTNGIVGCTQPRRVAAMSVAKRVSEEMD 392 (1020)
Q Consensus 324 i~~~q~eil~~i~~~q~vII~gpTGSGKTtqi~q~L---le~-~~~~~~~Il~tqPrR~lA~qva~rva~e~~ 392 (1020)
+.+.|.+++... +..++|.|..|||||+.+..-+ ++. +. ...+|+|+..|+.+|..+..|+...++
T Consensus 3 Ln~~Q~~av~~~--~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~v-~p~~IL~lTFT~kAA~em~~Rl~~~l~ 72 (672)
T PRK10919 3 LNPGQQQAVEFV--TGPCLVLAGAGSGKTRVITNKIAHLIRGCGY-QARHIAAVTFTNKAAREMKERVAQTLG 72 (672)
T ss_pred CCHHHHHHHhCC--CCCEEEEecCCCCHHHHHHHHHHHHHHhcCC-CHHHeeeEechHHHHHHHHHHHHHHhC
Confidence 456677777653 4567888999999999876544 332 22 235799999999999999999987654
No 346
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=94.22 E-value=0.1 Score=53.67 Aligned_cols=118 Identities=14% Similarity=0.153 Sum_probs=59.8
Q ss_pred HHhCCeEEEEecCCCchHHHHHHHHHHhcccCCCEEEEEcccHHHHHHHHHHHHHHhccccCCEEEEEEeeeecC--CCC
Q 001722 335 IRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELGDKVGYAIRFEDVT--GPS 412 (1020)
Q Consensus 335 i~~~q~vII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~lA~qva~rva~e~~~~lG~~VGy~ir~e~~~--s~~ 412 (1020)
+..++.+.|+|+.||||||.+-..+- ......|.|.+-. + ..++|........ +-.
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~G-~~~~~~G~i~~~~--~-------------------~~i~~~~q~~~~~~~tv~ 81 (166)
T cd03223 24 IKPGDRLLITGPSGTGKSSLFRALAG-LWPWGSGRIGMPE--G-------------------EDLLFLPQRPYLPLGTLR 81 (166)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhc-CCCCCCceEEECC--C-------------------ceEEEECCCCccccccHH
Confidence 45789999999999999998754332 2112234443310 0 1222211000000 000
Q ss_pred c-----cEEEEchHHHHHHHhcCCCCCCccEEEEeCCCcCCCCccHHHHHHHHHHhhcCCceEEEEeccC
Q 001722 413 T-----LIKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTSATL 477 (1020)
Q Consensus 413 t-----~I~~~T~g~LLr~ll~d~~L~~~s~IIIDEaHERs~~tD~ll~lLk~il~~r~~lklIlmSATl 477 (1020)
- ...-.+.|...+..+....+.+.+++|+||-- .+++.+....+...+... ...+|+.|.-+
T Consensus 82 ~nl~~~~~~~LS~G~~~rv~laral~~~p~~lllDEPt-~~LD~~~~~~l~~~l~~~--~~tiiivsh~~ 148 (166)
T cd03223 82 EQLIYPWDDVLSGGEQQRLAFARLLLHKPKFVFLDEAT-SALDEESEDRLYQLLKEL--GITVISVGHRP 148 (166)
T ss_pred HHhhccCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCc-cccCHHHHHHHHHHHHHh--CCEEEEEeCCh
Confidence 0 12235666666555555556788999999965 345544333332222222 34566666554
No 347
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=94.18 E-value=0.38 Score=51.93 Aligned_cols=101 Identities=18% Similarity=0.241 Sum_probs=54.4
Q ss_pred CeEEEEecCCCchHHHHHHHHHHhccc--CCCEEEEEcccHHHHHHHHHHHHHHhccccCCEEEEEEeeeecCCCCccEE
Q 001722 339 QVVVVVGETGSGKTTQLTQYLLEDGYT--TNGIVGCTQPRRVAAMSVAKRVSEEMDTELGDKVGYAIRFEDVTGPSTLIK 416 (1020)
Q Consensus 339 q~vII~gpTGSGKTtqi~q~Lle~~~~--~~~~Il~tqPrR~lA~qva~rva~e~~~~lG~~VGy~ir~e~~~s~~t~I~ 416 (1020)
+.++|.|++|+|||..+ +.+...... .+.+|+|+... ......+..+.. +
T Consensus 35 ~~l~l~G~~G~GKTHLL-~Ai~~~~~~~~~~~~v~y~~~~-~f~~~~~~~~~~------~-------------------- 86 (219)
T PF00308_consen 35 NPLFLYGPSGLGKTHLL-QAIANEAQKQHPGKRVVYLSAE-EFIREFADALRD------G-------------------- 86 (219)
T ss_dssp SEEEEEESTTSSHHHHH-HHHHHHHHHHCTTS-EEEEEHH-HHHHHHHHHHHT------T--------------------
T ss_pred CceEEECCCCCCHHHHH-HHHHHHHHhccccccceeecHH-HHHHHHHHHHHc------c--------------------
Confidence 35899999999999954 444433221 24567666432 222222221110 0
Q ss_pred EEchHHHHHHHhcCCCCCCccEEEEeCCCcCCCC---ccHHHHHHHHHHhhcCCceEEEEeccC
Q 001722 417 YMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLS---TDVLFGILKKVVARRRDFKLIVTSATL 477 (1020)
Q Consensus 417 ~~T~g~LLr~ll~d~~L~~~s~IIIDEaHERs~~---tD~ll~lLk~il~~r~~lklIlmSATl 477 (1020)
....+... +..+++||||.+|.-.-. .+.++.++..+... +-++|+.|...
T Consensus 87 --~~~~~~~~------~~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~--~k~li~ts~~~ 140 (219)
T PF00308_consen 87 --EIEEFKDR------LRSADLLIIDDIQFLAGKQRTQEELFHLFNRLIES--GKQLILTSDRP 140 (219)
T ss_dssp --SHHHHHHH------HCTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHT--TSEEEEEESS-
T ss_pred --cchhhhhh------hhcCCEEEEecchhhcCchHHHHHHHHHHHHHHhh--CCeEEEEeCCC
Confidence 00112222 457899999999953322 24666666666544 45777777554
No 348
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=94.18 E-value=0.076 Score=56.94 Aligned_cols=40 Identities=30% Similarity=0.367 Sum_probs=29.4
Q ss_pred HHhCCeEEEEecCCCchHHHHHHHHHHhcccC-----CCEEEEEc
Q 001722 335 IRENQVVVVVGETGSGKTTQLTQYLLEDGYTT-----NGIVGCTQ 374 (1020)
Q Consensus 335 i~~~q~vII~gpTGSGKTtqi~q~Lle~~~~~-----~~~Il~tq 374 (1020)
+..++++.|.|++|||||+.+.+++....... ...++++.
T Consensus 16 ~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~ 60 (226)
T cd01393 16 IPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYID 60 (226)
T ss_pred CcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEe
Confidence 44578999999999999999988877654332 14566654
No 349
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=94.15 E-value=0.13 Score=55.56 Aligned_cols=20 Identities=30% Similarity=0.355 Sum_probs=16.4
Q ss_pred CeEEEEecCCCchHHHHHHH
Q 001722 339 QVVVVVGETGSGKTTQLTQY 358 (1020)
Q Consensus 339 q~vII~gpTGSGKTtqi~q~ 358 (1020)
..+|+.||+|+||||.+-..
T Consensus 51 ~h~lf~GPPG~GKTTLA~II 70 (233)
T PF05496_consen 51 DHMLFYGPPGLGKTTLARII 70 (233)
T ss_dssp -EEEEESSTTSSHHHHHHHH
T ss_pred ceEEEECCCccchhHHHHHH
Confidence 37999999999999987543
No 350
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.14 E-value=0.13 Score=63.95 Aligned_cols=31 Identities=23% Similarity=0.318 Sum_probs=21.4
Q ss_pred HHHHHHhC---CeEEEEecCCCchHHHHHHHHHH
Q 001722 331 LLQVIREN---QVVVVVGETGSGKTTQLTQYLLE 361 (1020)
Q Consensus 331 il~~i~~~---q~vII~gpTGSGKTtqi~q~Lle 361 (1020)
+..++..+ ..+|++||.|+||||.+-.++..
T Consensus 28 L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~ 61 (620)
T PRK14948 28 LKNALISNRIAPAYLFTGPRGTGKTSSARILAKS 61 (620)
T ss_pred HHHHHHcCCCCceEEEECCCCCChHHHHHHHHHH
Confidence 33444444 35699999999999987655443
No 351
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=94.13 E-value=0.52 Score=53.06 Aligned_cols=21 Identities=29% Similarity=0.392 Sum_probs=17.2
Q ss_pred eEEEEecCCCchHHHHHHHHH
Q 001722 340 VVVVVGETGSGKTTQLTQYLL 360 (1020)
Q Consensus 340 ~vII~gpTGSGKTtqi~q~Ll 360 (1020)
++++.||+|+||||.+-.++.
T Consensus 40 ~~ll~G~~G~GKt~~~~~l~~ 60 (319)
T PRK00440 40 HLLFAGPPGTGKTTAALALAR 60 (319)
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999998755433
No 352
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=94.10 E-value=0.055 Score=58.13 Aligned_cols=22 Identities=41% Similarity=0.643 Sum_probs=18.1
Q ss_pred EEEEecCCCchHHHHHHHHHHh
Q 001722 341 VVVVGETGSGKTTQLTQYLLED 362 (1020)
Q Consensus 341 vII~gpTGSGKTtqi~q~Lle~ 362 (1020)
++|.|+.||||||.+...+-..
T Consensus 1 ~vv~G~pGsGKSt~i~~~~~~~ 22 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLIKKLLKDR 22 (234)
T ss_pred CEEEcCCCCCHHHHHHHHHHhc
Confidence 4799999999999887766553
No 353
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.10 E-value=0.032 Score=68.35 Aligned_cols=24 Identities=46% Similarity=0.686 Sum_probs=20.6
Q ss_pred HHHhCCeEEEEecCCCchHHHHHH
Q 001722 334 VIRENQVVVVVGETGSGKTTQLTQ 357 (1020)
Q Consensus 334 ~i~~~q~vII~gpTGSGKTtqi~q 357 (1020)
.|..|++|.++||.||||||++-.
T Consensus 490 ti~pGe~vALVGPSGsGKSTiasL 513 (716)
T KOG0058|consen 490 TIRPGEVVALVGPSGSGKSTIASL 513 (716)
T ss_pred eeCCCCEEEEECCCCCCHHHHHHH
Confidence 356789999999999999999754
No 354
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=94.07 E-value=0.079 Score=61.08 Aligned_cols=47 Identities=21% Similarity=0.220 Sum_probs=33.0
Q ss_pred HHHHHHhCCeEEEEecCCCchHHHHHHHHHHhcccCCCEEEEEcccHHH
Q 001722 331 LLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVA 379 (1020)
Q Consensus 331 il~~i~~~q~vII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~l 379 (1020)
+-.++..+.+++|+|+|||||||.+-. |+.. +....+++.+....++
T Consensus 155 l~~~v~~~~nilI~G~tGSGKTTll~a-Ll~~-i~~~~rivtiEd~~El 201 (344)
T PRK13851 155 LHACVVGRLTMLLCGPTGSGKTTMSKT-LISA-IPPQERLITIEDTLEL 201 (344)
T ss_pred HHHHHHcCCeEEEECCCCccHHHHHHH-HHcc-cCCCCCEEEECCCccc
Confidence 334567889999999999999998844 3333 2234567777776544
No 355
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.05 E-value=0.1 Score=55.76 Aligned_cols=21 Identities=33% Similarity=0.494 Sum_probs=17.8
Q ss_pred hCCeEEEEecCCCchHHHHHH
Q 001722 337 ENQVVVVVGETGSGKTTQLTQ 357 (1020)
Q Consensus 337 ~~q~vII~gpTGSGKTtqi~q 357 (1020)
.++.++|.||+|+||||.+-.
T Consensus 28 ~~~~~~l~G~n~~GKstll~~ 48 (204)
T cd03282 28 SSRFHIITGPNMSGKSTYLKQ 48 (204)
T ss_pred CCcEEEEECCCCCCHHHHHHH
Confidence 468899999999999997544
No 356
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.03 E-value=0.14 Score=63.33 Aligned_cols=30 Identities=23% Similarity=0.341 Sum_probs=22.0
Q ss_pred HHHHHHhCC---eEEEEecCCCchHHHHHHHHH
Q 001722 331 LLQVIRENQ---VVVVVGETGSGKTTQLTQYLL 360 (1020)
Q Consensus 331 il~~i~~~q---~vII~gpTGSGKTtqi~q~Ll 360 (1020)
+..++.+++ .+|++||.|+||||.+..+..
T Consensus 28 L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk 60 (620)
T PRK14954 28 IQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAK 60 (620)
T ss_pred HHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHH
Confidence 445566654 488999999999998765543
No 357
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=94.02 E-value=0.16 Score=55.32 Aligned_cols=74 Identities=9% Similarity=0.147 Sum_probs=44.5
Q ss_pred CccEEEEchHHHHHHHhcCCCCCCccEEEEeCCCcCCCCccHHHHHHHHHHhh-cCCceEEEEeccCCHHHHHHHhCC
Q 001722 412 STLIKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVAR-RRDFKLIVTSATLNAQKFSDFFGS 488 (1020)
Q Consensus 412 ~t~I~~~T~g~LLr~ll~d~~L~~~s~IIIDEaHERs~~tD~ll~lLk~il~~-r~~lklIlmSATld~~~f~~~f~~ 488 (1020)
+..+.--+.||..|....-..-.+.+++||||+=- --+..|.-..+.++... ..+.-+|+.|.. ...+.+|.+.
T Consensus 142 ~~PvktYSSGM~aRLaFsia~~~~pdILllDEvla-vGD~~F~~K~~~rl~e~~~~~~tiv~VSHd--~~~I~~~Cd~ 216 (249)
T COG1134 142 DQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLA-VGDAAFQEKCLERLNELVEKNKTIVLVSHD--LGAIKQYCDR 216 (249)
T ss_pred hCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhh-cCCHHHHHHHHHHHHHHHHcCCEEEEEECC--HHHHHHhcCe
Confidence 34566677899999877655666789999999862 12233433334444333 334556665654 4556666543
No 358
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=94.02 E-value=0.093 Score=65.81 Aligned_cols=61 Identities=20% Similarity=0.258 Sum_probs=46.8
Q ss_pred HHHHHHHHHhCCeEEEEecCCCchHHHHHHHHHHhcccCCCEEEEEcccHHHHHHHHHHHHH
Q 001722 328 RDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSE 389 (1020)
Q Consensus 328 q~eil~~i~~~q~vII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~lA~qva~rva~ 389 (1020)
|+.++.++......+|.|=+|+||||.+... ....+..+.+|+.+.-|-.|+..+-.++..
T Consensus 675 r~A~~k~L~aedy~LI~GMPGTGKTTtI~~L-IkiL~~~gkkVLLtsyThsAVDNILiKL~~ 735 (1100)
T KOG1805|consen 675 RQALLKALAAEDYALILGMPGTGKTTTISLL-IKILVALGKKVLLTSYTHSAVDNILIKLKG 735 (1100)
T ss_pred HHHHHHHHhccchheeecCCCCCchhhHHHH-HHHHHHcCCeEEEEehhhHHHHHHHHHHhc
Confidence 4456666777788999999999999987553 333344578999999999999888877743
No 359
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=93.99 E-value=0.13 Score=57.89 Aligned_cols=50 Identities=22% Similarity=0.353 Sum_probs=31.0
Q ss_pred HHHHHhcCCCCCCccEEEEeCCCcCCCCccHHHHHHHHHHhhcCCceEEEEe
Q 001722 423 LLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTS 474 (1020)
Q Consensus 423 LLr~ll~d~~L~~~s~IIIDEaHERs~~tD~ll~lLk~il~~r~~lklIlmS 474 (1020)
+.+.....+....+.+||||||+ .++.|..-.+++.+.....+..+|+.+
T Consensus 97 ~~~~~~~~~~~~~~kviiidead--~mt~~A~nallk~lEep~~~~~~il~~ 146 (325)
T COG0470 97 LAEFLSESPLEGGYKVVIIDEAD--KLTEDAANALLKTLEEPPKNTRFILIT 146 (325)
T ss_pred HHHHhccCCCCCCceEEEeCcHH--HHhHHHHHHHHHHhccCCCCeEEEEEc
Confidence 33333344456789999999999 455566556666655444455555544
No 360
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=93.97 E-value=0.61 Score=52.92 Aligned_cols=127 Identities=18% Similarity=0.247 Sum_probs=76.7
Q ss_pred hCCeEEEEecCCCchHHHHHHHHHHhcccCCCEEEE------EcccHHHHHHHHHHHHHHhccccCCEEEEEEeeeecCC
Q 001722 337 ENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGC------TQPRRVAAMSVAKRVSEEMDTELGDKVGYAIRFEDVTG 410 (1020)
Q Consensus 337 ~~q~vII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~------tqPrR~lA~qva~rva~e~~~~lG~~VGy~ir~e~~~s 410 (1020)
+...||++||-|||||+.+-..|.+ ....+...+. ++--+++...++..++.++... +..+| +.+.
T Consensus 48 EsnsviiigprgsgkT~li~~~Ls~-~q~~~E~~l~v~Lng~~~~dk~al~~I~rql~~e~~~~-~k~~g------sfte 119 (408)
T KOG2228|consen 48 ESNSVIIIGPRGSGKTILIDTRLSD-IQENGENFLLVRLNGELQTDKIALKGITRQLALELNRI-VKSFG------SFTE 119 (408)
T ss_pred CCCceEEEccCCCCceEeeHHHHhh-HHhcCCeEEEEEECccchhhHHHHHHHHHHHHHHHhhh-heeec------ccch
Confidence 4578999999999999988776666 2222222222 3446778888888888776532 11111 0000
Q ss_pred CCccEEEEchHHHHHHHhcCCCCCCc-cEEEEeCCCcCC--CCccHHHHHHHHHHhhcCCceEEEEeccCCH
Q 001722 411 PSTLIKYMTDGVLLRETLKDSDLDKY-RVIVMDEAHERS--LSTDVLFGILKKVVARRRDFKLIVTSATLNA 479 (1020)
Q Consensus 411 ~~t~I~~~T~g~LLr~ll~d~~L~~~-s~IIIDEaHERs--~~tD~ll~lLk~il~~r~~lklIlmSATld~ 479 (1020)
+=..||..+..+..-.+. -++|+||++-.. .+.-++..++......+..+-||++|--+|.
T Consensus 120 --------~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttrld~ 183 (408)
T KOG2228|consen 120 --------NLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTRLDI 183 (408)
T ss_pred --------hHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeeccccH
Confidence 012344444433334444 357888887322 2334666666666667778899999999874
No 361
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=93.97 E-value=0.093 Score=59.91 Aligned_cols=48 Identities=23% Similarity=0.367 Sum_probs=32.7
Q ss_pred HHHHHHhCCeEEEEecCCCchHHHHHHHHHHhc--ccCCCEEEEEcccHHH
Q 001722 331 LLQVIRENQVVVVVGETGSGKTTQLTQYLLEDG--YTTNGIVGCTQPRRVA 379 (1020)
Q Consensus 331 il~~i~~~q~vII~gpTGSGKTtqi~q~Lle~~--~~~~~~Il~tqPrR~l 379 (1020)
+..++..+.+++|+|+|||||||.+-. |+... .....+++++....++
T Consensus 141 L~~~v~~~~~ilI~G~tGSGKTTll~a-L~~~~~~~~~~~rivtIEd~~El 190 (319)
T PRK13894 141 IIAAVRAHRNILVIGGTGSGKTTLVNA-IINEMVIQDPTERVFIIEDTGEI 190 (319)
T ss_pred HHHHHHcCCeEEEECCCCCCHHHHHHH-HHHhhhhcCCCceEEEEcCCCcc
Confidence 444678889999999999999988744 33332 2234577777665543
No 362
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=93.96 E-value=0.28 Score=53.43 Aligned_cols=37 Identities=27% Similarity=0.265 Sum_probs=27.5
Q ss_pred CCeEEEEecCCCchHHHHHHHHHHhc-----------ccCCCEEEEEc
Q 001722 338 NQVVVVVGETGSGKTTQLTQYLLEDG-----------YTTNGIVGCTQ 374 (1020)
Q Consensus 338 ~q~vII~gpTGSGKTtqi~q~Lle~~-----------~~~~~~Il~tq 374 (1020)
+.+.+|+||.|+|||+.+.++++.-. ...+++|+++.
T Consensus 1 g~~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~ 48 (239)
T cd01125 1 GYVSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLS 48 (239)
T ss_pred CceeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEE
Confidence 35789999999999999988877531 12356787775
No 363
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=93.90 E-value=0.17 Score=61.07 Aligned_cols=38 Identities=32% Similarity=0.373 Sum_probs=25.4
Q ss_pred CCcHHHHHHHHHHHHh--CCeEEEEecCCCchHHHHHHHH
Q 001722 322 LPIFSVRDELLQVIRE--NQVVVVVGETGSGKTTQLTQYL 359 (1020)
Q Consensus 322 LPi~~~q~eil~~i~~--~q~vII~gpTGSGKTtqi~q~L 359 (1020)
|.+.+.+.+.+..+.. +..++|+|||||||||.+-..+
T Consensus 224 Lg~~~~~~~~l~~~~~~~~GlilitGptGSGKTTtL~a~L 263 (486)
T TIGR02533 224 LGMSPELLSRFERLIRRPHGIILVTGPTGSGKTTTLYAAL 263 (486)
T ss_pred cCCCHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHH
Confidence 4455555555554433 3468899999999999985443
No 364
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.88 E-value=0.19 Score=58.28 Aligned_cols=29 Identities=34% Similarity=0.500 Sum_probs=21.4
Q ss_pred HHHHHHHhCC---eEEEEecCCCchHHHHHHH
Q 001722 330 ELLQVIRENQ---VVVVVGETGSGKTTQLTQY 358 (1020)
Q Consensus 330 eil~~i~~~q---~vII~gpTGSGKTtqi~q~ 358 (1020)
.+.+.+.+++ .++++||+|+|||+.+-.+
T Consensus 28 ~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~l 59 (367)
T PRK14970 28 TLLNAIENNHLAQALLFCGPRGVGKTTCARIL 59 (367)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHH
Confidence 3444555543 7889999999999987655
No 365
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=93.83 E-value=0.18 Score=55.18 Aligned_cols=23 Identities=39% Similarity=0.666 Sum_probs=19.8
Q ss_pred HHhCCeEEEEecCCCchHHHHHH
Q 001722 335 IRENQVVVVVGETGSGKTTQLTQ 357 (1020)
Q Consensus 335 i~~~q~vII~gpTGSGKTtqi~q 357 (1020)
+..++.++|+|+|||||||.+-.
T Consensus 27 i~~Ge~~~i~G~nGsGKSTL~~~ 49 (235)
T COG1122 27 IEKGERVLLIGPNGSGKSTLLKL 49 (235)
T ss_pred ECCCCEEEEECCCCCCHHHHHHH
Confidence 45688999999999999998744
No 366
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=93.82 E-value=0.2 Score=62.34 Aligned_cols=53 Identities=15% Similarity=0.139 Sum_probs=39.7
Q ss_pred CCeEEEEecchhhccCCCCCeeEEEEcCCccceeccCCCCcccccccccCHHHHHHHhcccCCCC---CCEEEE
Q 001722 592 GTRKCIVATNIAETSLTVDGIFYVIDTGYGKMKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTG---PGTCYR 662 (1020)
Q Consensus 592 g~rkVIVATniaEtGItIp~V~~VID~G~~K~~~yd~~~g~~~L~~~piS~as~~QRaGRAGR~g---~G~cyr 662 (1020)
..++.|++-.++-.|-|=|+|-.++- .. ..-|-.+=.|.+||.=|.. .|.-++
T Consensus 482 ~plRFIFS~waLrEGWDNPNVFtIck-----L~-------------~S~SeiSK~QeVGRGLRLaVNe~G~RV~ 537 (985)
T COG3587 482 EPLRFIFSKWALREGWDNPNVFTICK-----LR-------------SSGSEISKLQEVGRGLRLAVNENGERVT 537 (985)
T ss_pred CcceeeeehhHHhhcCCCCCeeEEEE-----ec-------------CCCcchHHHHHhccceeeeeccccceec
Confidence 35899999999999999999866652 11 2356677899999999865 355444
No 367
>KOG2373 consensus Predicted mitochondrial DNA helicase twinkle [Replication, recombination and repair]
Probab=93.81 E-value=0.012 Score=65.90 Aligned_cols=38 Identities=39% Similarity=0.512 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHhCCeEEEEecCCCchHHHHHHHHHHhc
Q 001722 326 SVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDG 363 (1020)
Q Consensus 326 ~~q~eil~~i~~~q~vII~gpTGSGKTtqi~q~Lle~~ 363 (1020)
++-..++.-.+.+.-+|+.|||||||||-+--|.++..
T Consensus 261 pvLNk~LkGhR~GElTvlTGpTGsGKTTFlsEYsLDL~ 298 (514)
T KOG2373|consen 261 PVLNKYLKGHRPGELTVLTGPTGSGKTTFLSEYSLDLF 298 (514)
T ss_pred hHHHHHhccCCCCceEEEecCCCCCceeEehHhhHHHH
Confidence 34455666666788999999999999999888877653
No 368
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=93.80 E-value=0.58 Score=52.24 Aligned_cols=21 Identities=24% Similarity=0.319 Sum_probs=17.7
Q ss_pred CeEEEEecCCCchHHHHHHHH
Q 001722 339 QVVVVVGETGSGKTTQLTQYL 359 (1020)
Q Consensus 339 q~vII~gpTGSGKTtqi~q~L 359 (1020)
++++|.|||||||||.+-..+
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~ 132 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLA 132 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHh
Confidence 689999999999999875543
No 369
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=93.76 E-value=0.079 Score=67.38 Aligned_cols=117 Identities=20% Similarity=0.096 Sum_probs=73.2
Q ss_pred cHHHHHHHHHHHHhCCeEEEEecCCCchHHHHHHHHHHhcccCCCEEEEEcccHHHHHHHHHHHHHHhc---cccCCEEE
Q 001722 324 IFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMD---TELGDKVG 400 (1020)
Q Consensus 324 i~~~q~eil~~i~~~q~vII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~lA~qva~rva~e~~---~~lG~~VG 400 (1020)
+.++--+++-.+.=++--|.-..||=|||+++..+++-.++...|.-+||+--- +|+|=++.|+ ..+|.+||
T Consensus 137 m~~ydVQLiGgivLh~G~IAEM~TGEGKTLvatlp~yLnAL~G~gVHvVTvNDY-----LA~RDaewm~p~y~flGLtVg 211 (1025)
T PRK12900 137 MVPYDVQLIGGIVLHSGKISEMATGEGKTLVSTLPTFLNALTGRGVHVVTVNDY-----LAQRDKEWMNPVFEFHGLSVG 211 (1025)
T ss_pred ccccchHHhhhHHhhcCCccccCCCCCcchHhHHHHHHHHHcCCCcEEEeechH-----hhhhhHHHHHHHHHHhCCeee
Confidence 334444566666556666889999999999988777766666566666765432 3333334443 35788888
Q ss_pred EEEeeee----cCCCCccEEEEchHHHHH-----HHhcC---CCCCCccEEEEeCCC
Q 001722 401 YAIRFED----VTGPSTLIKYMTDGVLLR-----ETLKD---SDLDKYRVIVMDEAH 445 (1020)
Q Consensus 401 y~ir~e~----~~s~~t~I~~~T~g~LLr-----~ll~d---~~L~~~s~IIIDEaH 445 (1020)
......+ ...=.++|+|+|+.-|-- .+... .....+.+.|||||+
T Consensus 212 ~i~~~~~~~~Rr~aY~~DItYgTn~EfGFDYLRDnma~~~~~~vqR~~~faIVDEvD 268 (1025)
T PRK12900 212 VILNTMRPEERREQYLCDITYGTNNEFGFDYLRDNMAGTPEEMVQRDFYFAIVDEVD 268 (1025)
T ss_pred eeCCCCCHHHHHHhCCCcceecCCCccccccchhccccchhhhhccCCceEEEechh
Confidence 6422111 111267899999865422 22111 235778899999999
No 370
>PRK13342 recombination factor protein RarA; Reviewed
Probab=93.75 E-value=0.32 Score=57.53 Aligned_cols=20 Identities=30% Similarity=0.421 Sum_probs=17.0
Q ss_pred eEEEEecCCCchHHHHHHHH
Q 001722 340 VVVVVGETGSGKTTQLTQYL 359 (1020)
Q Consensus 340 ~vII~gpTGSGKTtqi~q~L 359 (1020)
.+++.||+|+||||.+-.+.
T Consensus 38 ~ilL~GppGtGKTtLA~~ia 57 (413)
T PRK13342 38 SMILWGPPGTGKTTLARIIA 57 (413)
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 78999999999999886543
No 371
>KOG2036 consensus Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=93.71 E-value=3.4 Score=50.75 Aligned_cols=131 Identities=21% Similarity=0.285 Sum_probs=76.0
Q ss_pred HHHHHHh---CCeEEEEecCCCchHHHHHHHHHHhcccCCCEEEEEcccHHHHHHHHHHHHHHhcc-ccCCEEEEEEe--
Q 001722 331 LLQVIRE---NQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDT-ELGDKVGYAIR-- 404 (1020)
Q Consensus 331 il~~i~~---~q~vII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~lA~qva~rva~e~~~-~lG~~VGy~ir-- 404 (1020)
++++|.. +-.+-++|.-|-|||.++-..+....--....|.+|.|.-+-...+..-|.+=+.. .....+.|.|-
T Consensus 265 f~dai~eK~lr~~vsLtA~RGRGKSAALGlsiA~AVa~GysnIyvtSPspeNlkTlFeFv~kGfDaL~Yqeh~Dy~iI~s 344 (1011)
T KOG2036|consen 265 FFDAIVEKTLRSTVSLTASRGRGKSAALGLSIAGAVAFGYSNIYVTSPSPENLKTLFEFVFKGFDALEYQEHVDYDIIQS 344 (1011)
T ss_pred HHHHHHHhhhcceEEEEecCCCCchhhhhHHHHHHHhcCcceEEEcCCChHHHHHHHHHHHcchhhhcchhhcchhhhhh
Confidence 3445533 45778899999999998776666543222347999999887777777666443221 11122222111
Q ss_pred -----------eeecCCCCccEEEEchHHHHHHHhcCCCCCCccEEEEeCCCcCCCCccHHHHHHHHHHhhcCCceEEEE
Q 001722 405 -----------FEDVTGPSTLIKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVT 473 (1020)
Q Consensus 405 -----------~e~~~s~~t~I~~~T~g~LLr~ll~d~~L~~~s~IIIDEaHERs~~tD~ll~lLk~il~~r~~lklIlm 473 (1020)
.+-.....-.|-|..|.- ...|....+||||||-- +=+-+++.++ ..-+|+|
T Consensus 345 ~np~fkkaivRInifr~hrQtIQYi~P~D-------~~kl~q~eLlVIDEAAA------IPLplvk~Li----gPylVfm 407 (1011)
T KOG2036|consen 345 TNPDFKKAIVRINIFREHRQTIQYISPHD-------HQKLGQAELLVIDEAAA------IPLPLVKKLI----GPYLVFM 407 (1011)
T ss_pred cChhhhhhEEEEEEeccccceeEeeccch-------hhhccCCcEEEechhhc------CCHHHHHHhh----cceeEEE
Confidence 110111111233433311 12377889999999973 3345666665 4468999
Q ss_pred eccCC
Q 001722 474 SATLN 478 (1020)
Q Consensus 474 SATld 478 (1020)
+.|+|
T Consensus 408 aSTin 412 (1011)
T KOG2036|consen 408 ASTIN 412 (1011)
T ss_pred eeccc
Confidence 99995
No 372
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.71 E-value=0.27 Score=61.06 Aligned_cols=50 Identities=18% Similarity=0.408 Sum_probs=29.3
Q ss_pred HHHHhcCCCCCCccEEEEeCCCcCCCCccHHHHHHHHHHhhcCCceEEEEecc
Q 001722 424 LRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTSAT 476 (1020)
Q Consensus 424 Lr~ll~d~~L~~~s~IIIDEaHERs~~tD~ll~lLk~il~~r~~lklIlmSAT 476 (1020)
+..+...|...++.+|||||||.- ..+..-.+++ .+...|+--++++.+|
T Consensus 110 i~~~~~~P~~~~~KVvIIdea~~L--s~~a~naLLK-~LEepp~~tifIL~tt 159 (614)
T PRK14971 110 IEQVRIPPQIGKYKIYIIDEVHML--SQAAFNAFLK-TLEEPPSYAIFILATT 159 (614)
T ss_pred HHHHhhCcccCCcEEEEEECcccC--CHHHHHHHHH-HHhCCCCCeEEEEEeC
Confidence 334455677889999999999943 3333333443 4444444444444444
No 373
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=93.71 E-value=0.19 Score=56.11 Aligned_cols=28 Identities=29% Similarity=0.648 Sum_probs=23.2
Q ss_pred HHHhCCeEEEEecCCCchHHHHHHHHHH
Q 001722 334 VIRENQVVVVVGETGSGKTTQLTQYLLE 361 (1020)
Q Consensus 334 ~i~~~q~vII~gpTGSGKTtqi~q~Lle 361 (1020)
.+..++.++++||||||||+.+-.++.+
T Consensus 29 l~~~~~pvLl~G~~GtGKT~li~~~l~~ 56 (272)
T PF12775_consen 29 LLSNGRPVLLVGPSGTGKTSLIQNFLSS 56 (272)
T ss_dssp HHHCTEEEEEESSTTSSHHHHHHHHHHC
T ss_pred HHHcCCcEEEECCCCCchhHHHHhhhcc
Confidence 3567889999999999999988776643
No 374
>PRK04841 transcriptional regulator MalT; Provisional
Probab=93.70 E-value=0.26 Score=63.73 Aligned_cols=27 Identities=30% Similarity=0.460 Sum_probs=23.1
Q ss_pred HHhCCeEEEEecCCCchHHHHHHHHHH
Q 001722 335 IRENQVVVVVGETGSGKTTQLTQYLLE 361 (1020)
Q Consensus 335 i~~~q~vII~gpTGSGKTtqi~q~Lle 361 (1020)
....+.++|+||.|+||||.+.+|+..
T Consensus 29 ~~~~~~~~v~apaG~GKTtl~~~~~~~ 55 (903)
T PRK04841 29 ANNYRLVLVTSPAGYGKTTLISQWAAG 55 (903)
T ss_pred ccCCCeEEEECCCCCCHHHHHHHHHHh
Confidence 345679999999999999999999854
No 375
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=93.65 E-value=0.18 Score=62.03 Aligned_cols=38 Identities=37% Similarity=0.433 Sum_probs=25.1
Q ss_pred CCcHHHHHHHHHH-HH-hCCeEEEEecCCCchHHHHHHHH
Q 001722 322 LPIFSVRDELLQV-IR-ENQVVVVVGETGSGKTTQLTQYL 359 (1020)
Q Consensus 322 LPi~~~q~eil~~-i~-~~q~vII~gpTGSGKTtqi~q~L 359 (1020)
|-+.+.+.+.+.. +. .+-.++|+|||||||||.+-..+
T Consensus 298 lg~~~~~~~~l~~~~~~~~Glilv~G~tGSGKTTtl~a~l 337 (564)
T TIGR02538 298 LGFEPDQKALFLEAIHKPQGMVLVTGPTGSGKTVSLYTAL 337 (564)
T ss_pred cCCCHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHH
Confidence 4445554444444 33 35578899999999999974433
No 376
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=93.62 E-value=0.18 Score=54.61 Aligned_cols=59 Identities=15% Similarity=0.285 Sum_probs=34.3
Q ss_pred EchHHHHHHHhcCCCCCCccEEEEeCCC--cCCCCccHHHHHHHHHHhhcCCceEEEEeccC
Q 001722 418 MTDGVLLRETLKDSDLDKYRVIVMDEAH--ERSLSTDVLFGILKKVVARRRDFKLIVTSATL 477 (1020)
Q Consensus 418 ~T~g~LLr~ll~d~~L~~~s~IIIDEaH--ERs~~tD~ll~lLk~il~~r~~lklIlmSATl 477 (1020)
++-|.-.|..+......+..+|+.||== -.+-+.+.++.+++.+.... +.-+|+.|...
T Consensus 143 LSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~-g~tii~VTHd~ 203 (226)
T COG1136 143 LSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKER-GKTIIMVTHDP 203 (226)
T ss_pred cCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhc-CCEEEEEcCCH
Confidence 3344444444444446677899999943 23344556777777765443 44566655554
No 377
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=93.56 E-value=0.088 Score=55.86 Aligned_cols=35 Identities=29% Similarity=0.318 Sum_probs=22.7
Q ss_pred eEEEEecCCCchHHHHHHHHHHhcccCCCEEEEEc
Q 001722 340 VVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQ 374 (1020)
Q Consensus 340 ~vII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tq 374 (1020)
.++|+|||||||||.+-..+.......++.|+++.
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e 37 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIE 37 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEc
Confidence 57999999999999975543332222244555543
No 378
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=93.49 E-value=0.11 Score=59.53 Aligned_cols=47 Identities=19% Similarity=0.204 Sum_probs=32.4
Q ss_pred HHHHHHhCCeEEEEecCCCchHHHHHHHHHHhcccCCCEEEEEcccHHH
Q 001722 331 LLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVA 379 (1020)
Q Consensus 331 il~~i~~~q~vII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~l 379 (1020)
+..++..+.+++|+|+|||||||.+-. |+... ....+|+++.-+.++
T Consensus 153 L~~~v~~~~nili~G~tgSGKTTll~a-L~~~i-p~~~ri~tiEd~~El 199 (332)
T PRK13900 153 LEHAVISKKNIIISGGTSTGKTTFTNA-ALREI-PAIERLITVEDAREI 199 (332)
T ss_pred HHHHHHcCCcEEEECCCCCCHHHHHHH-HHhhC-CCCCeEEEecCCCcc
Confidence 344667889999999999999999844 44433 334577776554443
No 379
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=93.48 E-value=0.51 Score=58.10 Aligned_cols=36 Identities=22% Similarity=0.162 Sum_probs=23.1
Q ss_pred CeEEEEecCCCchHHHHHHHHHHhcc-cCCCEEEEEc
Q 001722 339 QVVVVVGETGSGKTTQLTQYLLEDGY-TTNGIVGCTQ 374 (1020)
Q Consensus 339 q~vII~gpTGSGKTtqi~q~Lle~~~-~~~~~Il~tq 374 (1020)
+.++|.|++|+|||..+-.+..+... ..+.+|+++.
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yit 351 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVS 351 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee
Confidence 35899999999999876544443321 1244666654
No 380
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=93.45 E-value=0.26 Score=59.47 Aligned_cols=146 Identities=18% Similarity=0.203 Sum_probs=79.6
Q ss_pred HHHHHHHHHHh---------CCeEEEEecCCCchHHHHHHHHHHhccc---CCCEEEEEcccHHHHHHHHHHHHHHhccc
Q 001722 327 VRDELLQVIRE---------NQVVVVVGETGSGKTTQLTQYLLEDGYT---TNGIVGCTQPRRVAAMSVAKRVSEEMDTE 394 (1020)
Q Consensus 327 ~q~eil~~i~~---------~q~vII~gpTGSGKTtqi~q~Lle~~~~---~~~~Il~tqPrR~lA~qva~rva~e~~~~ 394 (1020)
+|.-++..+.. -+-++|.-+=|.|||+.+....+-..+. .+..|+|+.+++.-|..+...+.......
T Consensus 2 wQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~g~~~~~i~~~A~~~~QA~~~f~~~~~~i~~~ 81 (477)
T PF03354_consen 2 WQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLDGEPGAEIYCAANTRDQAKIVFDEAKKMIEAS 81 (477)
T ss_pred cHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcCCccCceEEEEeCCHHHHHHHHHHHHHHHHhC
Confidence 45555555541 2346777799999999865544333222 24579999999999999998876654321
Q ss_pred --cCCEEEEEEeeeecCCCCccEEEEchHHHHHHHhcCCC---CCCccEEEEeCCCcCCCCccHHHHHHHHHHhhcCCce
Q 001722 395 --LGDKVGYAIRFEDVTGPSTLIKYMTDGVLLRETLKDSD---LDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFK 469 (1020)
Q Consensus 395 --lG~~VGy~ir~e~~~s~~t~I~~~T~g~LLr~ll~d~~---L~~~s~IIIDEaHERs~~tD~ll~lLk~il~~r~~lk 469 (1020)
+....+..+ .......|.+-.++-+++.+..++. =.+.+++|+||+|+.. .+-+...++.-...+++..
T Consensus 82 ~~l~~~~~~~~----~~~~~~~i~~~~~~s~~~~~s~~~~~~dG~~~~~~i~DE~h~~~--~~~~~~~l~~g~~~r~~pl 155 (477)
T PF03354_consen 82 PELRKRKKPKI----IKSNKKEIEFPKTGSFFKALSSDADSLDGLNPSLAIFDELHAHK--DDELYDALESGMGARPNPL 155 (477)
T ss_pred hhhccchhhhh----hhhhceEEEEcCCCcEEEEEecCCCCccCCCCceEEEeCCCCCC--CHHHHHHHHhhhccCCCce
Confidence 111111111 0011122222222222222222221 2256899999999632 3336666776666666654
Q ss_pred E-EEEeccCC
Q 001722 470 L-IVTSATLN 478 (1020)
Q Consensus 470 l-IlmSATld 478 (1020)
+ +++||..+
T Consensus 156 ~~~ISTag~~ 165 (477)
T PF03354_consen 156 IIIISTAGDD 165 (477)
T ss_pred EEEEeCCCCC
Confidence 4 44555553
No 381
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=93.37 E-value=0.073 Score=67.79 Aligned_cols=118 Identities=25% Similarity=0.175 Sum_probs=72.9
Q ss_pred CCCcHHHHHHHHHHHHhCCeEEEEecCCCchHHHHHHHHHHhcccCCCEEEEEcccHHHHHHHHHHHHHHhc---cccCC
Q 001722 321 YLPIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMD---TELGD 397 (1020)
Q Consensus 321 ~LPi~~~q~eil~~i~~~q~vII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~lA~qva~rva~e~~---~~lG~ 397 (1020)
.+--|.+ +++-.+.-++--|.-+.||=|||+.+..+++-.++...|.-+||+--- +|+|=++.|+ ..+|-
T Consensus 167 ~m~~yDV--QliGgivLh~G~IAEM~TGEGKTLvAtlp~yLnAL~GkgVHvVTVNDY-----LA~RDaewmgply~fLGL 239 (1112)
T PRK12901 167 DMVHYDV--QLIGGVVLHQGKIAEMATGEGKTLVATLPVYLNALTGNGVHVVTVNDY-----LAKRDSEWMGPLYEFHGL 239 (1112)
T ss_pred CCcccch--HHhhhhhhcCCceeeecCCCCchhHHHHHHHHHHHcCCCcEEEEechh-----hhhccHHHHHHHHHHhCC
Confidence 3444444 466666666777899999999999987777766666566666665432 2333333333 34677
Q ss_pred EEEEEEeee--e---cCCCCccEEEEchHHHHHHHhcC--------CCCCCccEEEEeCCC
Q 001722 398 KVGYAIRFE--D---VTGPSTLIKYMTDGVLLRETLKD--------SDLDKYRVIVMDEAH 445 (1020)
Q Consensus 398 ~VGy~ir~e--~---~~s~~t~I~~~T~g~LLr~ll~d--------~~L~~~s~IIIDEaH 445 (1020)
+||...... . ...-.++|.|+|+.-|---.+.| .....+.+.|||||+
T Consensus 240 svg~i~~~~~~~~~rr~aY~~DItYgTn~EfGFDYLRDnm~~~~~~~vqR~~~fAIVDEvD 300 (1112)
T PRK12901 240 SVDCIDKHQPNSEARRKAYNADITYGTNNEFGFDYLRDNMAHSPEDLVQRKHNYAIVDEVD 300 (1112)
T ss_pred ceeecCCCCCCHHHHHHhCCCcceecCCCccccccchhccccchHhhhCcCCceeEeechh
Confidence 887533211 0 11236789999987542222221 235678899999998
No 382
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=93.37 E-value=0.15 Score=59.48 Aligned_cols=22 Identities=36% Similarity=0.524 Sum_probs=18.3
Q ss_pred HhCCeEEEEecCCCchHHHHHH
Q 001722 336 RENQVVVVVGETGSGKTTQLTQ 357 (1020)
Q Consensus 336 ~~~q~vII~gpTGSGKTtqi~q 357 (1020)
..+..++|+|||||||||.+-.
T Consensus 147 ~~~GlilI~G~TGSGKTT~l~a 168 (372)
T TIGR02525 147 PAAGLGLICGETGSGKSTLAAS 168 (372)
T ss_pred hcCCEEEEECCCCCCHHHHHHH
Confidence 3566889999999999998744
No 383
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=93.35 E-value=0.41 Score=56.83 Aligned_cols=34 Identities=18% Similarity=0.333 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHhCCeEEEEecCCCchHHHHHHHH
Q 001722 326 SVRDELLQVIRENQVVVVVGETGSGKTTQLTQYL 359 (1020)
Q Consensus 326 ~~q~eil~~i~~~q~vII~gpTGSGKTtqi~q~L 359 (1020)
...+.++.++..++++++.|++|+|||+.+-...
T Consensus 182 ~~le~l~~~L~~~~~iil~GppGtGKT~lA~~la 215 (459)
T PRK11331 182 TTIETILKRLTIKKNIILQGPPGVGKTFVARRLA 215 (459)
T ss_pred HHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHH
Confidence 3456778888899999999999999999885433
No 384
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=93.33 E-value=0.14 Score=64.20 Aligned_cols=66 Identities=18% Similarity=0.165 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHhCCeEEEEecCCCchHHHHHHHHHHhccc---CCCEEEEEcccHHHHHHHHHHHHHHhc
Q 001722 325 FSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYT---TNGIVGCTQPRRVAAMSVAKRVSEEMD 392 (1020)
Q Consensus 325 ~~~q~eil~~i~~~q~vII~gpTGSGKTtqi~q~Lle~~~~---~~~~Il~tqPrR~lA~qva~rva~e~~ 392 (1020)
.+.|.+++.. ....++|.|..|||||+.+..-+...... ....|+|+..++-+|.++-.|+.+.++
T Consensus 3 n~~Q~~av~~--~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~~~p~~IL~vTFt~~Aa~em~~Rl~~~l~ 71 (664)
T TIGR01074 3 NPQQQEAVEY--VTGPCLVLAGAGSGKTRVITNKIAYLIQNCGYKARNIAAVTFTNKAAREMKERVAKTLG 71 (664)
T ss_pred CHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHhC
Confidence 4567777654 35678999999999999876654433211 235788988999999999999977654
No 385
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=93.30 E-value=0.47 Score=55.31 Aligned_cols=23 Identities=30% Similarity=0.732 Sum_probs=17.5
Q ss_pred eEEEEecCCCchHHHHHHHHHHhc
Q 001722 340 VVVVVGETGSGKTTQLTQYLLEDG 363 (1020)
Q Consensus 340 ~vII~gpTGSGKTtqi~q~Lle~~ 363 (1020)
+++|.|+||+|||+++ .++.+..
T Consensus 44 n~~iyG~~GTGKT~~~-~~v~~~l 66 (366)
T COG1474 44 NIIIYGPTGTGKTATV-KFVMEEL 66 (366)
T ss_pred cEEEECCCCCCHhHHH-HHHHHHH
Confidence 5899999999998775 4455443
No 386
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=93.28 E-value=0.54 Score=48.71 Aligned_cols=42 Identities=21% Similarity=0.313 Sum_probs=27.5
Q ss_pred HHHHHHHHhCCeEEEEecCCCchHHHHHHHHHHhcccCCCEEE
Q 001722 329 DELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVG 371 (1020)
Q Consensus 329 ~eil~~i~~~q~vII~gpTGSGKTtqi~q~Lle~~~~~~~~Il 371 (1020)
+.+-.+......|+|.|++|+||++.+ ..|++......+..+
T Consensus 13 ~~~~~~a~~~~pVlI~GE~GtGK~~lA-~~IH~~s~r~~~pfi 54 (168)
T PF00158_consen 13 EQAKRAASSDLPVLITGETGTGKELLA-RAIHNNSPRKNGPFI 54 (168)
T ss_dssp HHHHHHTTSTS-EEEECSTTSSHHHHH-HHHHHCSTTTTS-EE
T ss_pred HHHHHHhCCCCCEEEEcCCCCcHHHHH-HHHHHhhhcccCCeE
Confidence 344455566788999999999998776 667765554444333
No 387
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=93.25 E-value=0.14 Score=59.83 Aligned_cols=50 Identities=22% Similarity=0.250 Sum_probs=34.5
Q ss_pred HHhCCeEEEEecCCCchHHHHHHHHHHhcccCCCEEEEEcccHHHHHHHHHH
Q 001722 335 IRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKR 386 (1020)
Q Consensus 335 i~~~q~vII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~lA~qva~r 386 (1020)
+..+..++|.|++|+||||.+.+++..... .+++++++.-- ....++..+
T Consensus 79 i~~GslvLI~G~pG~GKStLllq~a~~~a~-~g~~VlYvs~E-Es~~qi~~R 128 (372)
T cd01121 79 LVPGSVILIGGDPGIGKSTLLLQVAARLAK-RGGKVLYVSGE-ESPEQIKLR 128 (372)
T ss_pred ccCCeEEEEEeCCCCCHHHHHHHHHHHHHh-cCCeEEEEECC-cCHHHHHHH
Confidence 456789999999999999999998766543 34577776432 223344444
No 388
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=93.15 E-value=0.48 Score=52.24 Aligned_cols=72 Identities=13% Similarity=0.246 Sum_probs=47.8
Q ss_pred CccEEEEchHHHHHHHhcCCCCCCccEEEEeCCCcCCCCc---cHHHHHHHHHHhhcCCceEEEEeccCCHHHHHHHhCC
Q 001722 412 STLIKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLST---DVLFGILKKVVARRRDFKLIVTSATLNAQKFSDFFGS 488 (1020)
Q Consensus 412 ~t~I~~~T~g~LLr~ll~d~~L~~~s~IIIDEaHERs~~t---D~ll~lLk~il~~r~~lklIlmSATld~~~f~~~f~~ 488 (1020)
+..|--.+-|.+.|.++.....++-+++++||-= -+++. ..++.+|+++... ..-|++.| -|.....+|++.
T Consensus 134 ~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~-~gvD~~~~~~i~~lL~~l~~e--g~tIl~vt--HDL~~v~~~~D~ 208 (254)
T COG1121 134 DRQIGELSGGQKQRVLLARALAQNPDLLLLDEPF-TGVDVAGQKEIYDLLKELRQE--GKTVLMVT--HDLGLVMAYFDR 208 (254)
T ss_pred CCcccccCcHHHHHHHHHHHhccCCCEEEecCCc-ccCCHHHHHHHHHHHHHHHHC--CCEEEEEe--CCcHHhHhhCCE
Confidence 3456667788888888887788899999999954 23332 3566667766443 44455544 456667777763
No 389
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=93.15 E-value=0.14 Score=57.90 Aligned_cols=68 Identities=18% Similarity=0.368 Sum_probs=41.8
Q ss_pred ccEEEEchHHHHHHHhcCCCCCCccEEEEeCCCcCCCCcc---HHHHHHHHHHhhcCCceEEEEeccCC-HHHHHH
Q 001722 413 TLIKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTD---VLFGILKKVVARRRDFKLIVTSATLN-AQKFSD 484 (1020)
Q Consensus 413 t~I~~~T~g~LLr~ll~d~~L~~~s~IIIDEaHERs~~tD---~ll~lLk~il~~r~~lklIlmSATld-~~~f~~ 484 (1020)
..+...+.|+..+..+....+.+..++|+||-- .+++.. .+..+++.+ .....+|+.|.-++ ...+++
T Consensus 129 ~~~~~LS~G~~qrv~la~al~~~p~lliLDEPt-~gLD~~~~~~l~~~l~~~---~~~~tiii~sH~l~~~~~~~d 200 (301)
T TIGR03522 129 KKIGQLSKGYRQRVGLAQALIHDPKVLILDEPT-TGLDPNQLVEIRNVIKNI---GKDKTIILSTHIMQEVEAICD 200 (301)
T ss_pred CchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc-ccCCHHHHHHHHHHHHHh---cCCCEEEEEcCCHHHHHHhCC
Confidence 345567777777766655667788999999987 455544 344444443 22456676666653 444443
No 390
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=93.14 E-value=0.3 Score=51.80 Aligned_cols=59 Identities=19% Similarity=0.244 Sum_probs=34.4
Q ss_pred EEEchHHHHHHHhcCCCCCCccEEEEeCCCcCCCCcc---HHHHHHHHHHhhcCCceEEEEeccCC
Q 001722 416 KYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTD---VLFGILKKVVARRRDFKLIVTSATLN 478 (1020)
Q Consensus 416 ~~~T~g~LLr~ll~d~~L~~~s~IIIDEaHERs~~tD---~ll~lLk~il~~r~~lklIlmSATld 478 (1020)
...+.|...+..+....+.+.+++|+||.- .+++.. .+..+|+.. .....+|+.|..++
T Consensus 124 ~~LS~G~~qrv~laral~~~p~llllDEP~-~~LD~~~~~~l~~~l~~~---~~~~tiii~th~~~ 185 (207)
T cd03369 124 LNLSQGQRQLLCLARALLKRPRVLVLDEAT-ASIDYATDALIQKTIREE---FTNSTILTIAHRLR 185 (207)
T ss_pred CcCCHHHHHHHHHHHHHhhCCCEEEEeCCc-ccCCHHHHHHHHHHHHHh---cCCCEEEEEeCCHH
Confidence 345556555554444446677999999976 445444 344445443 23556677666553
No 391
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=93.03 E-value=0.14 Score=64.72 Aligned_cols=67 Identities=18% Similarity=0.141 Sum_probs=49.5
Q ss_pred cHHHHHHHHHHHHhCCeEEEEecCCCchHHHHHHHHHHhc---ccCCCEEEEEcccHHHHHHHHHHHHHHhc
Q 001722 324 IFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDG---YTTNGIVGCTQPRRVAAMSVAKRVSEEMD 392 (1020)
Q Consensus 324 i~~~q~eil~~i~~~q~vII~gpTGSGKTtqi~q~Lle~~---~~~~~~Il~tqPrR~lA~qva~rva~e~~ 392 (1020)
+.+.|.+++.. ....++|.|..|||||+.+..-+.... --...+|+++..|+-+|.++..|+.+.++
T Consensus 5 Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~L~~Ria~Li~~~~v~p~~IL~lTFTnkAA~em~~Rl~~~~~ 74 (715)
T TIGR01075 5 LNDKQREAVAA--PPGNLLVLAGAGSGKTRVLTHRIAWLLSVENASPHSIMAVTFTNKAAAEMRHRIGALLG 74 (715)
T ss_pred cCHHHHHHHcC--CCCCEEEEecCCCCHHHHHHHHHHHHHHcCCCCHHHeEeeeccHHHHHHHHHHHHHHhc
Confidence 45667777754 346789999999999998765444322 11245799999999999999999977654
No 392
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=93.03 E-value=0.16 Score=57.77 Aligned_cols=53 Identities=21% Similarity=0.098 Sum_probs=35.7
Q ss_pred HHHHHHHHHHH-HhCCeEEEEecCCCchHHHHHHHHHHhcccCCCEEEEEcccHHH
Q 001722 325 FSVRDELLQVI-RENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVA 379 (1020)
Q Consensus 325 ~~~q~eil~~i-~~~q~vII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~l 379 (1020)
.+-+.++|..+ ....+++|+|.|||||||.+-.++..-.. ..+|+|+.-+.+|
T Consensus 159 ~~~~a~~L~~av~~r~NILisGGTGSGKTTlLNal~~~i~~--~eRvItiEDtaEL 212 (355)
T COG4962 159 IRRAAKFLRRAVGIRCNILISGGTGSGKTTLLNALSGFIDS--DERVITIEDTAEL 212 (355)
T ss_pred CHHHHHHHHHHHhhceeEEEeCCCCCCHHHHHHHHHhcCCC--cccEEEEeehhhh
Confidence 33444555444 44459999999999999987655544332 3489998876544
No 393
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=93.02 E-value=0.37 Score=53.25 Aligned_cols=130 Identities=22% Similarity=0.280 Sum_probs=68.5
Q ss_pred HHhCCeEEEEecCCCchHHHHHHHHHHhcccCCCEEEEEcccHHH---HHHHHHHHHHHhccccCCEEEEEEeeeecCCC
Q 001722 335 IRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVA---AMSVAKRVSEEMDTELGDKVGYAIRFEDVTGP 411 (1020)
Q Consensus 335 i~~~q~vII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~l---A~qva~rva~e~~~~lG~~VGy~ir~e~~~s~ 411 (1020)
|.++.++-|+|+.||||||..-..+ ...-...|.|.+- ...+. .....+++.+.+ ..+|..--+.-++..
T Consensus 36 i~~ge~~glVGESG~GKSTlgr~i~-~L~~pt~G~i~f~-g~~i~~~~~~~~~~~v~elL-~~Vgl~~~~~~ryPh---- 108 (268)
T COG4608 36 IKEGETLGLVGESGCGKSTLGRLIL-GLEEPTSGEILFE-GKDITKLSKEERRERVLELL-EKVGLPEEFLYRYPH---- 108 (268)
T ss_pred EcCCCEEEEEecCCCCHHHHHHHHH-cCcCCCCceEEEc-CcchhhcchhHHHHHHHHHH-HHhCCCHHHhhcCCc----
Confidence 5679999999999999999864322 2222234555542 11111 112223332222 122211001111111
Q ss_pred CccEEEEchHHHHHHHhcCCCCCCccEEEEeCCCcCCCCc---cHHHHHHHHHHhhcCCceEEEEeccCC
Q 001722 412 STLIKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLST---DVLFGILKKVVARRRDFKLIVTSATLN 478 (1020)
Q Consensus 412 ~t~I~~~T~g~LLr~ll~d~~L~~~s~IIIDEaHERs~~t---D~ll~lLk~il~~r~~lklIlmSATld 478 (1020)
-.+.|...|-.+.....-+.++||.||.-. .++. ...+.+|+++... -++-.+++|.-+.
T Consensus 109 -----elSGGQrQRi~IARALal~P~liV~DEpvS-aLDvSiqaqIlnLL~dlq~~-~~lt~lFIsHDL~ 171 (268)
T COG4608 109 -----ELSGGQRQRIGIARALALNPKLIVADEPVS-ALDVSVQAQILNLLKDLQEE-LGLTYLFISHDLS 171 (268)
T ss_pred -----ccCchhhhhHHHHHHHhhCCcEEEecCchh-hcchhHHHHHHHHHHHHHHH-hCCeEEEEEEEHH
Confidence 133455555444444455678999999762 3333 3466677776544 3778888888774
No 394
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=93.02 E-value=0.17 Score=60.80 Aligned_cols=71 Identities=27% Similarity=0.331 Sum_probs=49.6
Q ss_pred hhHHHHHHHcCCCcHHHHHHHHHHHHhCCeEEEEecCCCchHHHHHHHHHHhcccC-----CCEEEEEcccHHHHHHHHH
Q 001722 311 KSKTLAEQRQYLPIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTT-----NGIVGCTQPRRVAAMSVAK 385 (1020)
Q Consensus 311 ~~~~l~~~R~~LPi~~~q~eil~~i~~~q~vII~gpTGSGKTtqi~q~Lle~~~~~-----~~~Il~tqPrR~lA~qva~ 385 (1020)
+.+.+.+. |-+-|.+||.. ..|..+||.|..||||||++++-++-..|.- .+.|+++.|.++.+.-++.
T Consensus 205 ~mrdIV~T-----IQkEQneIIR~-ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l~~k~vlvl~PN~vFleYis~ 278 (747)
T COG3973 205 KMRDIVET-----IQKEQNEIIRF-EKNKILVVQGAAGSGKTTIALHRVAYLLYGYRGPLQAKPVLVLGPNRVFLEYISR 278 (747)
T ss_pred hHHHHHHH-----hhHhHHHHHhc-cCCCeEEEecCCCCCchhHHHHHHHHHHhccccccccCceEEEcCcHHHHHHHHH
Confidence 44555554 44456777653 4678999999999999999877555443332 2359999999998866665
Q ss_pred HH
Q 001722 386 RV 387 (1020)
Q Consensus 386 rv 387 (1020)
.+
T Consensus 279 VL 280 (747)
T COG3973 279 VL 280 (747)
T ss_pred hc
Confidence 54
No 395
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=93.01 E-value=0.23 Score=52.31 Aligned_cols=125 Identities=15% Similarity=0.253 Sum_probs=64.4
Q ss_pred HHhCCeEEEEecCCCchHHHHHHHHHHhc--ccCCCEEEEE-cccHHHHHHHHHHHHHHhccccCCEEEEEEeeeecCCC
Q 001722 335 IRENQVVVVVGETGSGKTTQLTQYLLEDG--YTTNGIVGCT-QPRRVAAMSVAKRVSEEMDTELGDKVGYAIRFEDVTGP 411 (1020)
Q Consensus 335 i~~~q~vII~gpTGSGKTtqi~q~Lle~~--~~~~~~Il~t-qPrR~lA~qva~rva~e~~~~lG~~VGy~ir~e~~~s~ 411 (1020)
+..++.+.|.||.||||||.+-..+ -.. ....|.|.+- ++... . .+ ...++|..........
T Consensus 32 i~~Ge~~~l~G~nGsGKStLl~~i~-Gl~~~~~~~G~i~~~g~~~~~--~----~~--------~~~i~~~~q~~~~~~~ 96 (194)
T cd03213 32 AKPGELTAIMGPSGAGKSTLLNALA-GRRTGLGVSGEVLINGRPLDK--R----SF--------RKIIGYVPQDDILHPT 96 (194)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHh-CCCCCCCCceEEEECCEeCch--H----hh--------hheEEEccCcccCCCC
Confidence 4578999999999999999764432 221 2223555431 11110 0 11 1123332111000000
Q ss_pred Cc---------cEEEEchHHHHHHHhcCCCCCCccEEEEeCCCcCCCCcc---HHHHHHHHHHhhcCCceEEEEeccC
Q 001722 412 ST---------LIKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTD---VLFGILKKVVARRRDFKLIVTSATL 477 (1020)
Q Consensus 412 ~t---------~I~~~T~g~LLr~ll~d~~L~~~s~IIIDEaHERs~~tD---~ll~lLk~il~~r~~lklIlmSATl 477 (1020)
.+ .+.-++.|+..+..+....+.+..++|+||.- .+++.+ .++.+++.+.. ...-+|+.|.-+
T Consensus 97 ~t~~~~i~~~~~~~~LS~G~~qrv~laral~~~p~illlDEP~-~~LD~~~~~~l~~~l~~~~~--~~~tiii~sh~~ 171 (194)
T cd03213 97 LTVRETLMFAAKLRGLSGGERKRVSIALELVSNPSLLFLDEPT-SGLDSSSALQVMSLLRRLAD--TGRTIICSIHQP 171 (194)
T ss_pred CcHHHHHHHHHHhccCCHHHHHHHHHHHHHHcCCCEEEEeCCC-cCCCHHHHHHHHHHHHHHHh--CCCEEEEEecCc
Confidence 00 01145667666655555556778899999987 566655 34444544422 245566666654
No 396
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=93.00 E-value=0.097 Score=45.19 Aligned_cols=18 Identities=44% Similarity=0.763 Sum_probs=16.0
Q ss_pred CCeEEEEecCCCchHHHH
Q 001722 338 NQVVVVVGETGSGKTTQL 355 (1020)
Q Consensus 338 ~q~vII~gpTGSGKTtqi 355 (1020)
+.+++|+|++||||||.+
T Consensus 23 g~~tli~G~nGsGKSTll 40 (62)
T PF13555_consen 23 GDVTLITGPNGSGKSTLL 40 (62)
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 458999999999999985
No 397
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=92.99 E-value=0.45 Score=52.25 Aligned_cols=62 Identities=11% Similarity=0.217 Sum_probs=39.0
Q ss_pred cEEEEchHHHHHHHhcCCCCCCccEEEEeCCCcCCCCcc---HHHHHHHHHHhhcCCceEEEEeccC
Q 001722 414 LIKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTD---VLFGILKKVVARRRDFKLIVTSATL 477 (1020)
Q Consensus 414 ~I~~~T~g~LLr~ll~d~~L~~~s~IIIDEaHERs~~tD---~ll~lLk~il~~r~~lklIlmSATl 477 (1020)
.+.-.+.|+..+..+....+.+.+++|+||-- .+++.. .+..+++.+... ...-+|+.|.-+
T Consensus 112 ~~~~LSgGe~qrv~iaraL~~~p~llllDEPt-~~LD~~~~~~l~~~l~~~~~~-~~~tiiivsHd~ 176 (246)
T cd03237 112 EVPELSGGELQRVAIAACLSKDADIYLLDEPS-AYLDVEQRLMASKVIRRFAEN-NEKTAFVVEHDI 176 (246)
T ss_pred ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCH
Confidence 34456778877776666667788999999976 344444 444555554432 245566666554
No 398
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=92.98 E-value=0.32 Score=53.04 Aligned_cols=60 Identities=15% Similarity=0.245 Sum_probs=37.3
Q ss_pred EEchHHHHHHHhcCCCCCCccEEEEeCCCcCCCCc---cHHHHHHHHHHhhcCCceEEEEeccC
Q 001722 417 YMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLST---DVLFGILKKVVARRRDFKLIVTSATL 477 (1020)
Q Consensus 417 ~~T~g~LLr~ll~d~~L~~~s~IIIDEaHERs~~t---D~ll~lLk~il~~r~~lklIlmSATl 477 (1020)
.++.|...+.++....+.+..++|+||.= -+++. ..++..|..+....+...+|+.|.-.
T Consensus 171 ~LS~Ge~rrvLiaRALv~~P~LLiLDEP~-~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~ 233 (257)
T COG1119 171 SLSQGEQRRVLIARALVKDPELLILDEPA-QGLDLIAREQLLNRLEELAASPGAPALLFVTHHA 233 (257)
T ss_pred hcCHhHHHHHHHHHHHhcCCCEEEecCcc-ccCChHHHHHHHHHHHHHhcCCCCceEEEEEcch
Confidence 34445444444444456777899999965 24443 35666666666666667778777654
No 399
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=92.97 E-value=0.3 Score=50.84 Aligned_cols=129 Identities=16% Similarity=0.234 Sum_probs=65.5
Q ss_pred HHhCCeEEEEecCCCchHHHHHHHHHHhcccCCCEEEEEc-ccHHHHHHHHHHHHHHhccccCCEEEEEEee------ee
Q 001722 335 IRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQ-PRRVAAMSVAKRVSEEMDTELGDKVGYAIRF------ED 407 (1020)
Q Consensus 335 i~~~q~vII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tq-PrR~lA~qva~rva~e~~~~lG~~VGy~ir~------e~ 407 (1020)
+..++.+.|+|++||||||.+-. |.-......|.|.+-- +..... ....+ ...++|.... ..
T Consensus 23 i~~G~~~~i~G~nGsGKSTLl~~-l~G~~~~~~G~i~~~g~~~~~~~--~~~~~--------~~~i~~~~q~~~~~~~~~ 91 (182)
T cd03215 23 VRAGEIVGIAGLVGNGQTELAEA-LFGLRPPASGEITLDGKPVTRRS--PRDAI--------RAGIAYVPEDRKREGLVL 91 (182)
T ss_pred EcCCcEEEEECCCCCCHHHHHHH-HhCCCCCCCceEEECCEECCccC--HHHHH--------hCCeEEecCCcccCcccC
Confidence 35789999999999999997644 3222222245554321 100000 00001 1123442211 00
Q ss_pred cCCCCccEEE---EchHHHHHHHhcCCCCCCccEEEEeCCCcCCCCcc---HHHHHHHHHHhhcCCceEEEEeccC
Q 001722 408 VTGPSTLIKY---MTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTD---VLFGILKKVVARRRDFKLIVTSATL 477 (1020)
Q Consensus 408 ~~s~~t~I~~---~T~g~LLr~ll~d~~L~~~s~IIIDEaHERs~~tD---~ll~lLk~il~~r~~lklIlmSATl 477 (1020)
..+-.-.+.+ .+.|+..+..+....+.+..++|+||-- -+++.. .+..+++.+.. ....+|+.|.-+
T Consensus 92 ~~t~~e~l~~~~~LS~G~~qrl~la~al~~~p~llllDEP~-~~LD~~~~~~l~~~l~~~~~--~~~tiii~sh~~ 164 (182)
T cd03215 92 DLSVAENIALSSLLSGGNQQKVVLARWLARDPRVLILDEPT-RGVDVGAKAEIYRLIRELAD--AGKAVLLISSEL 164 (182)
T ss_pred CCcHHHHHHHHhhcCHHHHHHHHHHHHHccCCCEEEECCCC-cCCCHHHHHHHHHHHHHHHH--CCCEEEEEeCCH
Confidence 0000001111 6777766666655667788999999976 344443 45555555432 245666666554
No 400
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=92.96 E-value=0.18 Score=63.92 Aligned_cols=66 Identities=17% Similarity=0.176 Sum_probs=50.0
Q ss_pred cHHHHHHHHHHHHhCCeEEEEecCCCchHHHHHHHH---HHh-cccCCCEEEEEcccHHHHHHHHHHHHHHhc
Q 001722 324 IFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYL---LED-GYTTNGIVGCTQPRRVAAMSVAKRVSEEMD 392 (1020)
Q Consensus 324 i~~~q~eil~~i~~~q~vII~gpTGSGKTtqi~q~L---le~-~~~~~~~Il~tqPrR~lA~qva~rva~e~~ 392 (1020)
+.+.|.+++... ...++|.|..|||||+.+..-+ ++. +. ....|+++.-|+-+|.++..|+.+.++
T Consensus 10 Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~vl~~Ria~Li~~~~v-~p~~IL~lTFT~kAA~Em~~Rl~~~~~ 79 (721)
T PRK11773 10 LNDKQREAVAAP--LGNMLVLAGAGSGKTRVLVHRIAWLMQVENA-SPYSIMAVTFTNKAAAEMRHRIEQLLG 79 (721)
T ss_pred cCHHHHHHHhCC--CCCEEEEecCCCCHHHHHHHHHHHHHHcCCC-ChhHeEeeeccHHHHHHHHHHHHHHhc
Confidence 667777777643 4678899999999999876543 332 22 245799999999999999999977654
No 401
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=92.96 E-value=0.71 Score=47.41 Aligned_cols=19 Identities=32% Similarity=0.553 Sum_probs=16.1
Q ss_pred CeEEEEecCCCchHHHHHH
Q 001722 339 QVVVVVGETGSGKTTQLTQ 357 (1020)
Q Consensus 339 q~vII~gpTGSGKTtqi~q 357 (1020)
-.+.|+|++|+||||.+..
T Consensus 6 mki~ITG~PGvGKtTl~~k 24 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLK 24 (179)
T ss_pred eEEEEeCCCCccHHHHHHH
Confidence 3578999999999998754
No 402
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=92.93 E-value=0.36 Score=51.57 Aligned_cols=60 Identities=13% Similarity=0.276 Sum_probs=36.1
Q ss_pred EEchHHHHHHHhcCCCCCCccEEEEeCCCcCCCCcc---HHHHHHHHHHhhcCCceEEEEeccCC
Q 001722 417 YMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTD---VLFGILKKVVARRRDFKLIVTSATLN 478 (1020)
Q Consensus 417 ~~T~g~LLr~ll~d~~L~~~s~IIIDEaHERs~~tD---~ll~lLk~il~~r~~lklIlmSATld 478 (1020)
-.+.|+..+..+....+.+.+++|+||.- -+++.. .+..+++.+... .+.-+|+.|..++
T Consensus 140 ~LS~G~~qrv~la~al~~~p~lllLDEP~-~~LD~~~~~~l~~~l~~~~~~-~~~tii~~sH~~~ 202 (218)
T cd03255 140 ELSGGQQQRVAIARALANDPKIILADEPT-GNLDSETGKEVMELLRELNKE-AGTTIVVVTHDPE 202 (218)
T ss_pred hcCHHHHHHHHHHHHHccCCCEEEEcCCc-ccCCHHHHHHHHHHHHHHHHh-cCCeEEEEECCHH
Confidence 34556555554444456778999999987 455544 444555554321 2456777777653
No 403
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=92.88 E-value=0.2 Score=55.72 Aligned_cols=50 Identities=26% Similarity=0.318 Sum_probs=29.8
Q ss_pred CcHHHHHHHHH-HHH-hCCeEEEEecCCCchHHHHHHHHHHhcccCCCEEEEE
Q 001722 323 PIFSVRDELLQ-VIR-ENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCT 373 (1020)
Q Consensus 323 Pi~~~q~eil~-~i~-~~q~vII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~t 373 (1020)
-..+.+.+.+. ++. .+..++|+|+|||||||.+-.++. .......+|+.+
T Consensus 63 g~~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~l~all~-~i~~~~~~iiti 114 (264)
T cd01129 63 GLKPENLEIFRKLLEKPHGIILVTGPTGSGKTTTLYSALS-ELNTPEKNIITV 114 (264)
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEECCCCCcHHHHHHHHHh-hhCCCCCeEEEE
Confidence 34444444444 443 345789999999999998855443 322223455554
No 404
>PRK13695 putative NTPase; Provisional
Probab=92.86 E-value=1.2 Score=45.87 Aligned_cols=20 Identities=30% Similarity=0.439 Sum_probs=16.7
Q ss_pred eEEEEecCCCchHHHHHHHH
Q 001722 340 VVVVVGETGSGKTTQLTQYL 359 (1020)
Q Consensus 340 ~vII~gpTGSGKTtqi~q~L 359 (1020)
.++|+|++||||||.+-..+
T Consensus 2 ~i~ltG~~G~GKTTll~~i~ 21 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIA 21 (174)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999999887543
No 405
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=92.81 E-value=0.13 Score=54.47 Aligned_cols=21 Identities=43% Similarity=0.703 Sum_probs=19.0
Q ss_pred HHhCCeEEEEecCCCchHHHH
Q 001722 335 IRENQVVVVVGETGSGKTTQL 355 (1020)
Q Consensus 335 i~~~q~vII~gpTGSGKTtqi 355 (1020)
+.+++++-|-||+|+||||.+
T Consensus 25 ae~Gei~GlLG~NGAGKTT~L 45 (245)
T COG4555 25 AEEGEITGLLGENGAGKTTLL 45 (245)
T ss_pred eccceEEEEEcCCCCCchhHH
Confidence 468999999999999999975
No 406
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=92.80 E-value=0.23 Score=50.88 Aligned_cols=22 Identities=36% Similarity=0.579 Sum_probs=18.1
Q ss_pred CeEEEEecCCCchHHHHHHHHH
Q 001722 339 QVVVVVGETGSGKTTQLTQYLL 360 (1020)
Q Consensus 339 q~vII~gpTGSGKTtqi~q~Ll 360 (1020)
..++|+||+|||||+.+-...+
T Consensus 22 ~~~~i~G~NgsGKS~~l~~i~~ 43 (162)
T cd03227 22 SLTIITGPNGSGKSTILDAIGL 43 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999998655443
No 407
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=92.75 E-value=0.58 Score=59.12 Aligned_cols=21 Identities=29% Similarity=0.373 Sum_probs=17.3
Q ss_pred CeEEEEecCCCchHHHHHHHH
Q 001722 339 QVVVVVGETGSGKTTQLTQYL 359 (1020)
Q Consensus 339 q~vII~gpTGSGKTtqi~q~L 359 (1020)
..+++.||+|+||||.+-...
T Consensus 53 ~slLL~GPpGtGKTTLA~aIA 73 (725)
T PRK13341 53 GSLILYGPPGVGKTTLARIIA 73 (725)
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 378999999999999875543
No 408
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=92.74 E-value=0.61 Score=57.38 Aligned_cols=23 Identities=39% Similarity=0.641 Sum_probs=20.4
Q ss_pred HHhCCeEEEEecCCCchHHHHHH
Q 001722 335 IRENQVVVVVGETGSGKTTQLTQ 357 (1020)
Q Consensus 335 i~~~q~vII~gpTGSGKTtqi~q 357 (1020)
+..|+.+.|+|||||||||.+-.
T Consensus 352 i~~Ge~vaiVG~sGsGKSTl~~L 374 (567)
T COG1132 352 IEPGEKVAIVGPSGSGKSTLIKL 374 (567)
T ss_pred EcCCCEEEEECCCCCCHHHHHHH
Confidence 67899999999999999998754
No 409
>PF12846 AAA_10: AAA-like domain
Probab=92.63 E-value=0.11 Score=57.54 Aligned_cols=42 Identities=36% Similarity=0.412 Sum_probs=30.7
Q ss_pred CCeEEEEecCCCchHHHHHHHHHHhcccCCCEEEEEcccHHHH
Q 001722 338 NQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAA 380 (1020)
Q Consensus 338 ~q~vII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~lA 380 (1020)
|.+++|+|+||||||+.+-. ++......+..++++=|.....
T Consensus 1 n~h~~i~G~tGsGKT~~~~~-l~~~~~~~g~~~~i~D~~g~~~ 42 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLKN-LLEQLIRRGPRVVIFDPKGDYS 42 (304)
T ss_pred CCeEEEECCCCCcHHHHHHH-HHHHHHHcCCCEEEEcCCchHH
Confidence 57899999999999998874 4444455566777777764443
No 410
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=92.62 E-value=0.17 Score=57.03 Aligned_cols=64 Identities=13% Similarity=0.333 Sum_probs=38.3
Q ss_pred CccEEEEchHHHHHHHhcCCCCCCccEEEEeCCCcCCCCccHH---HHHHHHHHhhcCCceEEEEeccC
Q 001722 412 STLIKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVL---FGILKKVVARRRDFKLIVTSATL 477 (1020)
Q Consensus 412 ~t~I~~~T~g~LLr~ll~d~~L~~~s~IIIDEaHERs~~tD~l---l~lLk~il~~r~~lklIlmSATl 477 (1020)
+..+.-.+-|+-.|..+.-..+.+.+++|+||-= .+++.... ..+|+.+... .+.-|++.|.-+
T Consensus 131 ~~~~~~lS~G~kqrl~ia~aL~~~P~lliLDEPt-~GLDp~~~~~~~~~l~~l~~~-g~~tvlissH~l 197 (293)
T COG1131 131 NKKVRTLSGGMKQRLSIALALLHDPELLILDEPT-SGLDPESRREIWELLRELAKE-GGVTILLSTHIL 197 (293)
T ss_pred CcchhhcCHHHHHHHHHHHHHhcCCCEEEECCCC-cCCCHHHHHHHHHHHHHHHhC-CCcEEEEeCCcH
Confidence 3445566778777766655667788999999976 45655433 3334443322 124555555554
No 411
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=92.61 E-value=0.42 Score=56.22 Aligned_cols=29 Identities=24% Similarity=0.440 Sum_probs=23.6
Q ss_pred HHHHHHhCCeEEEEecCCCchHHHHHHHH
Q 001722 331 LLQVIRENQVVVVVGETGSGKTTQLTQYL 359 (1020)
Q Consensus 331 il~~i~~~q~vII~gpTGSGKTtqi~q~L 359 (1020)
++..+..+.|+|+.||+|+|||..+....
T Consensus 202 l~~fve~~~Nli~lGp~GTGKThla~~l~ 230 (449)
T TIGR02688 202 LLPLVEPNYNLIELGPKGTGKSYIYNNLS 230 (449)
T ss_pred hHHHHhcCCcEEEECCCCCCHHHHHHHHh
Confidence 34668899999999999999998765433
No 412
>CHL00095 clpC Clp protease ATP binding subunit
Probab=92.56 E-value=0.34 Score=62.36 Aligned_cols=24 Identities=29% Similarity=0.328 Sum_probs=17.5
Q ss_pred eEEEEecCCCchHHHHHHHHHHhcc
Q 001722 340 VVVVVGETGSGKTTQLTQYLLEDGY 364 (1020)
Q Consensus 340 ~vII~gpTGSGKTtqi~q~Lle~~~ 364 (1020)
.++++||||+|||+.+-. |.+..+
T Consensus 541 ~~lf~Gp~GvGKt~lA~~-LA~~l~ 564 (821)
T CHL00095 541 SFLFSGPTGVGKTELTKA-LASYFF 564 (821)
T ss_pred EEEEECCCCCcHHHHHHH-HHHHhc
Confidence 478999999999987643 444444
No 413
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.56 E-value=0.28 Score=51.63 Aligned_cols=127 Identities=19% Similarity=0.225 Sum_probs=63.3
Q ss_pred HHhCCeEEEEecCCCchHHHHHHHHHHhcc-cCCCEEEEEcccHHHHHHHHHHHHHHhccccCCEEEEEEeeeecCCCCc
Q 001722 335 IRENQVVVVVGETGSGKTTQLTQYLLEDGY-TTNGIVGCTQPRRVAAMSVAKRVSEEMDTELGDKVGYAIRFEDVTGPST 413 (1020)
Q Consensus 335 i~~~q~vII~gpTGSGKTtqi~q~Lle~~~-~~~~~Il~tqPrR~lA~qva~rva~e~~~~lG~~VGy~ir~e~~~s~~t 413 (1020)
+..++.+.|+|+.||||||.+-...-.... ...|.|.+ ...... ..+ ...++|...........+
T Consensus 30 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~-~g~~~~-----~~~--------~~~i~~~~q~~~~~~~~t 95 (192)
T cd03232 30 VKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILI-NGRPLD-----KNF--------QRSTGYVEQQDVHSPNLT 95 (192)
T ss_pred EeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEE-CCEehH-----HHh--------hhceEEecccCccccCCc
Confidence 457899999999999999987543311111 12344433 211111 111 112333211100000000
Q ss_pred ---cEE------EEchHHHHHHHhcCCCCCCccEEEEeCCCcCCCCcc---HHHHHHHHHHhhcCCceEEEEeccCC
Q 001722 414 ---LIK------YMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTD---VLFGILKKVVARRRDFKLIVTSATLN 478 (1020)
Q Consensus 414 ---~I~------~~T~g~LLr~ll~d~~L~~~s~IIIDEaHERs~~tD---~ll~lLk~il~~r~~lklIlmSATld 478 (1020)
.+. -.+.|...+..+....+.+..++|+||-- .+++.+ .++.+++.+.. ....+|+.|.-++
T Consensus 96 v~~~l~~~~~~~~LSgGe~qrv~la~al~~~p~vlllDEP~-~~LD~~~~~~l~~~l~~~~~--~~~tiiivtH~~~ 169 (192)
T cd03232 96 VREALRFSALLRGLSVEQRKRLTIGVELAAKPSILFLDEPT-SGLDSQAAYNIVRFLKKLAD--SGQAILCTIHQPS 169 (192)
T ss_pred HHHHHHHHHHHhcCCHHHhHHHHHHHHHhcCCcEEEEeCCC-cCCCHHHHHHHHHHHHHHHH--cCCEEEEEEcCCh
Confidence 000 24445544444444456778999999987 456554 44455554432 2456777666653
No 414
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=92.56 E-value=0.6 Score=54.81 Aligned_cols=132 Identities=13% Similarity=0.096 Sum_probs=72.3
Q ss_pred CeEEEEecCCCchHHHHHHHHHHhccc--CCCEEEEEcccHH-HHHHHHHHHHHHhccccCCEEEEEEeee--ec--CCC
Q 001722 339 QVVVVVGETGSGKTTQLTQYLLEDGYT--TNGIVGCTQPRRV-AAMSVAKRVSEEMDTELGDKVGYAIRFE--DV--TGP 411 (1020)
Q Consensus 339 q~vII~gpTGSGKTtqi~q~Lle~~~~--~~~~Il~tqPrR~-lA~qva~rva~e~~~~lG~~VGy~ir~e--~~--~s~ 411 (1020)
+..++.|..|||||..+...++..... .+.+++|+-|+.- +..++...+...+. .+|...-+.+.-. .. .+.
T Consensus 2 ~~~i~~GgrgSGKS~~~~~~~~~~~~~~~~~~~~~~~r~~~~sl~~sv~~~l~~~i~-~~g~~~~~~~~~~~~~i~~~~~ 80 (396)
T TIGR01547 2 EEIIAKGGRRSGKTFAIALKLVEKLAINKKQQNILAARKVQNSIRDSVFKDIENLLS-IEGINYEFKKSKSSMEIKILNT 80 (396)
T ss_pred ceEEEeCCCCcccHHHHHHHHHHHHHhcCCCcEEEEEehhhhHHHHHHHHHHHHHHH-HcCChhheeecCCccEEEecCC
Confidence 467899999999999887777666555 5678999887766 66677777755443 2232211111100 00 011
Q ss_pred CccEEEEch-HHHHHHHhcCCCCCCccEEEEeCCCcCCCCccHHHHHHHHHHhhcCCceEEEEeccCC
Q 001722 412 STLIKYMTD-GVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTSATLN 478 (1020)
Q Consensus 412 ~t~I~~~T~-g~LLr~ll~d~~L~~~s~IIIDEaHERs~~tD~ll~lLk~il~~r~~lklIlmSATld 478 (1020)
++.|+|..- .--. .+ .....+..+++|||.+-+ .+.+-.++..+ ........|++|.|++
T Consensus 81 g~~i~f~g~~d~~~-~i---k~~~~~~~~~idEa~~~~--~~~~~~l~~rl-r~~~~~~~i~~t~NP~ 141 (396)
T TIGR01547 81 GKKFIFKGLNDKPN-KL---KSGAGIAIIWFEEASQLT--FEDIKELIPRL-RETGGKKFIIFSSNPE 141 (396)
T ss_pred CeEEEeecccCChh-Hh---hCcceeeeehhhhhhhcC--HHHHHHHHHHh-hccCCccEEEEEcCcC
Confidence 344444332 1000 00 113447899999999653 33444444332 2111212478888884
No 415
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=92.52 E-value=0.065 Score=56.44 Aligned_cols=58 Identities=12% Similarity=0.094 Sum_probs=33.1
Q ss_pred EEchHHHHHHHhcCCCCCCccEEEEeCCCcCCCCccH---HHHHHHHHHhhcCCceEEEEeccC
Q 001722 417 YMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDV---LFGILKKVVARRRDFKLIVTSATL 477 (1020)
Q Consensus 417 ~~T~g~LLr~ll~d~~L~~~s~IIIDEaHERs~~tD~---ll~lLk~il~~r~~lklIlmSATl 477 (1020)
-.+.|...+..+....+.+..++|+||.- .+++.+. +..+++... ..+.-+|+.|.-+
T Consensus 123 ~LS~G~~~rl~la~al~~~p~~lllDEP~-~~LD~~~~~~l~~~l~~~~--~~~~tiii~sh~~ 183 (195)
T PRK13541 123 SLSSGMQKIVAIARLIACQSDLWLLDEVE-TNLSKENRDLLNNLIVMKA--NSGGIVLLSSHLE 183 (195)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHH--hCCCEEEEEeCCc
Confidence 34555555544444446678999999988 5666543 344443321 2345566666544
No 416
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.48 E-value=0.52 Score=56.05 Aligned_cols=106 Identities=20% Similarity=0.359 Sum_probs=66.0
Q ss_pred eEEEEecCCCchHHHHHHHHHHhcccCCCEEEEEcccHHHHHHHHHHHHHHhccccCCEEEEEEeeeecCCCCccEEEEc
Q 001722 340 VVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELGDKVGYAIRFEDVTGPSTLIKYMT 419 (1020)
Q Consensus 340 ~vII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~lA~qva~rva~e~~~~lG~~VGy~ir~e~~~s~~t~I~~~T 419 (1020)
.+++.||.|||||+.+.+..+...+ .-|-++.|......+-..++
T Consensus 540 SvLl~Gp~~sGKTaLAA~iA~~S~F---PFvKiiSpe~miG~sEsaKc-------------------------------- 584 (744)
T KOG0741|consen 540 SVLLEGPPGSGKTALAAKIALSSDF---PFVKIISPEDMIGLSESAKC-------------------------------- 584 (744)
T ss_pred EEEEecCCCCChHHHHHHHHhhcCC---CeEEEeChHHccCccHHHHH--------------------------------
Confidence 5889999999999999988877654 24555666432221111111
Q ss_pred hHHHHHHHhcCCCCCCccEEEEeCCCcCCCC--------ccHHHHHHHHHHhhcCC--ceEEEEeccCCHHHHH
Q 001722 420 DGVLLRETLKDSDLDKYRVIVMDEAHERSLS--------TDVLFGILKKVVARRRD--FKLIVTSATLNAQKFS 483 (1020)
Q Consensus 420 ~g~LLr~ll~d~~L~~~s~IIIDEaHERs~~--------tD~ll~lLk~il~~r~~--lklIlmSATld~~~f~ 483 (1020)
.-++....|..-+..++||||++. |-++ +..++..|.-++++.|. -|++++.-|-..+.+.
T Consensus 585 --~~i~k~F~DAYkS~lsiivvDdiE-rLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~ 655 (744)
T KOG0741|consen 585 --AHIKKIFEDAYKSPLSIIVVDDIE-RLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQ 655 (744)
T ss_pred --HHHHHHHHHhhcCcceEEEEcchh-hhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHH
Confidence 112334455667788999999986 3332 23566666666666554 3777777776554443
No 417
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=92.46 E-value=0.34 Score=48.12 Aligned_cols=35 Identities=26% Similarity=0.446 Sum_probs=25.5
Q ss_pred HHHHHHHHHHhCCeEEEEecCCCchHHHHHHHHHHh
Q 001722 327 VRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLED 362 (1020)
Q Consensus 327 ~q~eil~~i~~~q~vII~gpTGSGKTtqi~q~Lle~ 362 (1020)
.+.++-.....+..|+|+|++||||++.+ .+|+..
T Consensus 10 l~~~l~~~a~~~~pvli~GE~GtGK~~~A-~~lh~~ 44 (138)
T PF14532_consen 10 LRRQLERLAKSSSPVLITGEPGTGKSLLA-RALHRY 44 (138)
T ss_dssp HHHHHHHHHCSSS-EEEECCTTSSHHHHH-HCCHHT
T ss_pred HHHHHHHHhCCCCcEEEEcCCCCCHHHHH-HHHHhh
Confidence 45556666677889999999999999865 455554
No 418
>COG1702 PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms]
Probab=92.34 E-value=0.24 Score=56.30 Aligned_cols=55 Identities=20% Similarity=0.229 Sum_probs=42.4
Q ss_pred CCCcHHHHHHHHHHHHhCCeEEEEecCCCchHHHHHHHHHHhcccC-CCEEEEEcc
Q 001722 321 YLPIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTT-NGIVGCTQP 375 (1020)
Q Consensus 321 ~LPi~~~q~eil~~i~~~q~vII~gpTGSGKTtqi~q~Lle~~~~~-~~~Il~tqP 375 (1020)
-.|....|..-+++|.++..++-+||-|+|||........+..... =.+|+.+-|
T Consensus 126 I~~kt~~Q~~y~eai~~~di~fGiGpAGTGKTyLava~av~al~~~~v~rIiLtRP 181 (348)
T COG1702 126 IIPKTPGQNMYPEAIEEHDIVFGIGPAGTGKTYLAVAKAVDALGAGQVRRIILTRP 181 (348)
T ss_pred eEecChhHHHHHHHHHhcCeeeeecccccCChhhhHHhHhhhhhhcccceeeecCc
Confidence 4677788999999999999999999999999986544444433221 247889888
No 419
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=92.32 E-value=0.18 Score=58.20 Aligned_cols=37 Identities=27% Similarity=0.411 Sum_probs=25.1
Q ss_pred hCCeEEEEecCCCchHHHHHHHHHHhccc-CCCEEEEEc
Q 001722 337 ENQVVVVVGETGSGKTTQLTQYLLEDGYT-TNGIVGCTQ 374 (1020)
Q Consensus 337 ~~q~vII~gpTGSGKTtqi~q~Lle~~~~-~~~~Il~tq 374 (1020)
.+..++|+|||||||||.+-..+ ..... .+++|+.+.
T Consensus 121 ~~g~ili~G~tGSGKTT~l~al~-~~i~~~~~~~i~tiE 158 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTLASMI-DYINKNAAGHIITIE 158 (343)
T ss_pred cCcEEEEECCCCCCHHHHHHHHH-HhhCcCCCCEEEEEc
Confidence 46789999999999999985443 33222 235666553
No 420
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=92.31 E-value=0.38 Score=59.14 Aligned_cols=30 Identities=27% Similarity=0.432 Sum_probs=21.4
Q ss_pred HHHHHHhCC---eEEEEecCCCchHHHHHHHHH
Q 001722 331 LLQVIRENQ---VVVVVGETGSGKTTQLTQYLL 360 (1020)
Q Consensus 331 il~~i~~~q---~vII~gpTGSGKTtqi~q~Ll 360 (1020)
+...+.+++ .++++||.|+||||.+-.++.
T Consensus 28 L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk 60 (563)
T PRK06647 28 LKHSIESNKIANAYIFSGPRGVGKTSSARAFAR 60 (563)
T ss_pred HHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 444555543 468999999999998765443
No 421
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=92.30 E-value=0.31 Score=52.94 Aligned_cols=26 Identities=31% Similarity=0.565 Sum_probs=21.7
Q ss_pred HHhCCeEEEEecCCCchHHHHHHHHH
Q 001722 335 IRENQVVVVVGETGSGKTTQLTQYLL 360 (1020)
Q Consensus 335 i~~~q~vII~gpTGSGKTtqi~q~Ll 360 (1020)
+..++++.|.||.||||||.+-..+-
T Consensus 31 V~~Gei~~iiGgSGsGKStlLr~I~G 56 (263)
T COG1127 31 VPRGEILAILGGSGSGKSTLLRLILG 56 (263)
T ss_pred ecCCcEEEEECCCCcCHHHHHHHHhc
Confidence 45789999999999999998766543
No 422
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=92.29 E-value=0.52 Score=54.38 Aligned_cols=55 Identities=20% Similarity=0.172 Sum_probs=35.1
Q ss_pred HHHHHHHhcCCCCCCccEEEEeCCCcCCCCccHHHHHHHHHHhhcCCceEEEEeccC
Q 001722 421 GVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTSATL 477 (1020)
Q Consensus 421 g~LLr~ll~d~~L~~~s~IIIDEaHERs~~tD~ll~lLk~il~~r~~lklIlmSATl 477 (1020)
--|.+.+...+....+.++|||+||. ++..-.-.+||.+-.-.++..+|++|..+
T Consensus 118 R~l~~~~~~~~~~~~~kV~iI~~ae~--m~~~AaNaLLKtLEEPp~~t~fiL~t~~~ 172 (342)
T PRK06964 118 RALLDFCGVGTHRGGARVVVLYPAEA--LNVAAANALLKTLEEPPPGTVFLLVSARI 172 (342)
T ss_pred HHHHHHhccCCccCCceEEEEechhh--cCHHHHHHHHHHhcCCCcCcEEEEEECCh
Confidence 34555555667778999999999994 45555566777754433345555555443
No 423
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=92.27 E-value=0.85 Score=49.04 Aligned_cols=22 Identities=32% Similarity=0.513 Sum_probs=18.3
Q ss_pred CCeEEEEecCCCchHHHHHHHH
Q 001722 338 NQVVVVVGETGSGKTTQLTQYL 359 (1020)
Q Consensus 338 ~q~vII~gpTGSGKTtqi~q~L 359 (1020)
++.++|+||.|+||||.+-...
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~ 50 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVA 50 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHH
Confidence 4789999999999999865544
No 424
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=92.26 E-value=0.17 Score=61.10 Aligned_cols=94 Identities=14% Similarity=0.139 Sum_probs=0.0
Q ss_pred HHhCCeEEEEecCCCchHHHHHHHHHHhcccCCCEEEEEcccHHHHHHHHHHHHHHhccccCCEEEEEEeeeecCCCCcc
Q 001722 335 IRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELGDKVGYAIRFEDVTGPSTL 414 (1020)
Q Consensus 335 i~~~q~vII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~lA~qva~rva~e~~~~lG~~VGy~ir~e~~~s~~t~ 414 (1020)
+..+..++|.||+|+||||...|++.+.... +.+++++. .-+...++..+. +.+|..+...+ ....
T Consensus 260 ~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~-ge~~~y~s-~eEs~~~i~~~~-~~lg~~~~~~~-----------~~g~ 325 (484)
T TIGR02655 260 FFKDSIILATGATGTGKTLLVSKFLENACAN-KERAILFA-YEESRAQLLRNA-YSWGIDFEEME-----------QQGL 325 (484)
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEEE-eeCCHHHHHHHH-HHcCCChHHHh-----------hCCc
Q ss_pred EEEEch-------HHHHHHHhcCCCCCCccEEEEe
Q 001722 415 IKYMTD-------GVLLRETLKDSDLDKYRVIVMD 442 (1020)
Q Consensus 415 I~~~T~-------g~LLr~ll~d~~L~~~s~IIID 442 (1020)
+.+... +.++..+...-.-.+.+.||||
T Consensus 326 l~~~~~~p~~~~~~~~~~~i~~~i~~~~~~~vvID 360 (484)
T TIGR02655 326 LKIICAYPESAGLEDHLQIIKSEIADFKPARIAID 360 (484)
T ss_pred EEEEEcccccCChHHHHHHHHHHHHHcCCCEEEEc
No 425
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=92.25 E-value=0.13 Score=57.40 Aligned_cols=24 Identities=38% Similarity=0.569 Sum_probs=18.9
Q ss_pred CCeEEEEecCCCchHHHHHHHHHH
Q 001722 338 NQVVVVVGETGSGKTTQLTQYLLE 361 (1020)
Q Consensus 338 ~q~vII~gpTGSGKTtqi~q~Lle 361 (1020)
+--|+|.|||||||||.+...+-.
T Consensus 125 ~GLILVTGpTGSGKSTTlAamId~ 148 (353)
T COG2805 125 RGLILVTGPTGSGKSTTLAAMIDY 148 (353)
T ss_pred CceEEEeCCCCCcHHHHHHHHHHH
Confidence 446788999999999998765443
No 426
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=92.25 E-value=0.86 Score=51.30 Aligned_cols=22 Identities=27% Similarity=0.286 Sum_probs=17.8
Q ss_pred CeEEEEecCCCchHHHHHHHHH
Q 001722 339 QVVVVVGETGSGKTTQLTQYLL 360 (1020)
Q Consensus 339 q~vII~gpTGSGKTtqi~q~Ll 360 (1020)
+.++++||+|+|||+.+-.+..
T Consensus 31 ~~~ll~Gp~G~GKT~la~~ia~ 52 (305)
T TIGR00635 31 DHLLLYGPPGLGKTTLAHIIAN 52 (305)
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 5689999999999988765443
No 427
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=92.18 E-value=0.4 Score=50.81 Aligned_cols=60 Identities=17% Similarity=0.215 Sum_probs=35.8
Q ss_pred EEEEchHHHHHHHhcCCCCCCccEEEEeCCCcCCCCcc---HHHHHHHHHHhhcCCceEEEEeccC
Q 001722 415 IKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTD---VLFGILKKVVARRRDFKLIVTSATL 477 (1020)
Q Consensus 415 I~~~T~g~LLr~ll~d~~L~~~s~IIIDEaHERs~~tD---~ll~lLk~il~~r~~lklIlmSATl 477 (1020)
+.-.+.|+..+..+....+.+.+++|+||.- .+++.. .+..+|+.+.. ....+|+.|.-+
T Consensus 127 ~~~LS~G~~qrl~la~al~~~p~llllDEPt-~~LD~~~~~~l~~~l~~~~~--~~~tiii~sh~~ 189 (204)
T PRK13538 127 VRQLSAGQQRRVALARLWLTRAPLWILDEPF-TAIDKQGVARLEALLAQHAE--QGGMVILTTHQD 189 (204)
T ss_pred hhhcCHHHHHHHHHHHHHhcCCCEEEEeCCC-ccCCHHHHHHHHHHHHHHHH--CCCEEEEEecCh
Confidence 3345556555554444557788999999987 456554 34444544422 245677766654
No 428
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=92.16 E-value=0.28 Score=56.28 Aligned_cols=49 Identities=14% Similarity=0.153 Sum_probs=28.3
Q ss_pred HHHHhcCCCCCCccEEEEeCCCcCCCCccHHHHHHHHHHhhcCCceEEEEe
Q 001722 424 LRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTS 474 (1020)
Q Consensus 424 Lr~ll~d~~L~~~s~IIIDEaHERs~~tD~ll~lLk~il~~r~~lklIlmS 474 (1020)
...+...+....+.+|||||||. ++....-.+||.+-.-.++..+|+++
T Consensus 99 ~~~~~~~~~~~~~kvviI~~a~~--~~~~a~NaLLK~LEEPp~~~~~Il~t 147 (329)
T PRK08058 99 KEEFSKSGVESNKKVYIIEHADK--MTASAANSLLKFLEEPSGGTTAILLT 147 (329)
T ss_pred HHHHhhCCcccCceEEEeehHhh--hCHHHHHHHHHHhcCCCCCceEEEEe
Confidence 33444456678899999999994 33334444555543333344455533
No 429
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=92.14 E-value=0.93 Score=55.34 Aligned_cols=120 Identities=18% Similarity=0.173 Sum_probs=89.9
Q ss_pred hcCCCCCEEEEcCCHHHHHHHHHHHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHHHhcCCC-eEEEEecchhh
Q 001722 526 ITSPPGDILIFMTGQDEIEAACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGT-RKCIVATNIAE 604 (1020)
Q Consensus 526 ~~~~~g~ILVFl~g~~eie~l~~~L~e~l~~l~~~~~~~~~~l~vl~lhs~L~~~eq~~I~~~f~~g~-rkVIVATniaE 604 (1020)
+...+..+|+|+.-.+-++.+-+.|. ..++..+-+.|+....+|..+...|.... .-.+++|-...
T Consensus 1040 LkaegHRvL~yfQMTkM~dl~EdYl~-------------yr~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAGG 1106 (1185)
T KOG0388|consen 1040 LKAEGHRVLMYFQMTKMIDLIEDYLV-------------YRGYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAGG 1106 (1185)
T ss_pred hhcCCceEEehhHHHHHHHHHHHHHH-------------hhccceEEecCcchhhHHHHHHhhccCCceEEEEEecccCc
Confidence 44567789999864444444433332 23677888999999999999999887644 45678999999
Q ss_pred ccCCCCCeeEEEEcCCccceeccCCCCcccccccccCHHHHHHHhcccCCCCCCEEEEccChhhHhhcc
Q 001722 605 TSLTVDGIFYVIDTGYGKMKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTGPGTCYRLYTESAYLNEM 673 (1020)
Q Consensus 605 tGItIp~V~~VID~G~~K~~~yd~~~g~~~L~~~piS~as~~QRaGRAGR~g~G~cyrLyt~~~~~~~m 673 (1020)
.||++...+.||- ||+.- .|.--.++.-|+-|-|-+..-.+|||.+++..++.+
T Consensus 1107 LGINLTAADTViF--------YdSDW-------NPT~D~QAMDRAHRLGQTrdvtvyrl~~rgTvEEk~ 1160 (1185)
T KOG0388|consen 1107 LGINLTAADTVIF--------YDSDW-------NPTADQQAMDRAHRLGQTRDVTVYRLITRGTVEEKV 1160 (1185)
T ss_pred ccccccccceEEE--------ecCCC-------CcchhhHHHHHHHhccCccceeeeeecccccHHHHH
Confidence 9999999999994 66432 255556777888888888889999999988776544
No 430
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=92.10 E-value=0.56 Score=48.66 Aligned_cols=45 Identities=22% Similarity=0.291 Sum_probs=33.7
Q ss_pred EEEEecCCCchHHHHHHHHHHhcccCCCEEEEEcccHHHHHHHHHHHHH
Q 001722 341 VVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSE 389 (1020)
Q Consensus 341 vII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~lA~qva~rva~ 389 (1020)
++|.|++|||||+.+.+++.. .+.+++++...+..-..+.+|+..
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~----~~~~~~y~at~~~~d~em~~rI~~ 46 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE----LGGPVTYIATAEAFDDEMAERIAR 46 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh----cCCCeEEEEccCcCCHHHHHHHHH
Confidence 689999999999999998776 234677766555556667777654
No 431
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=92.08 E-value=0.31 Score=61.51 Aligned_cols=60 Identities=10% Similarity=0.124 Sum_probs=37.6
Q ss_pred EchHHHHHHHhcCCCCCCccEEEEeCCCcCCCCccHHHHHHHHHHhhcCCceEEEEeccCC
Q 001722 418 MTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTSATLN 478 (1020)
Q Consensus 418 ~T~g~LLr~ll~d~~L~~~s~IIIDEaHERs~~tD~ll~lLk~il~~r~~lklIlmSATld 478 (1020)
.+.|.-.|..+....+.+.+++|+||+= -+++.+.-..+...+....++..+|+.|.-++
T Consensus 602 LSgGQrQRlalARall~~p~iliLDE~T-s~LD~~te~~i~~~l~~~~~~~T~iiItHrl~ 661 (694)
T TIGR03375 602 LSGGQRQAVALARALLRDPPILLLDEPT-SAMDNRSEERFKDRLKRWLAGKTLVLVTHRTS 661 (694)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCC-CCCCHHHHHHHHHHHHHHhCCCEEEEEecCHH
Confidence 5667666666555667888999999986 35555443344444444445666777776653
No 432
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=92.06 E-value=0.17 Score=55.17 Aligned_cols=51 Identities=22% Similarity=0.248 Sum_probs=35.8
Q ss_pred HHhCCeEEEEecCCCchHHHHHHHHHHhcccCCCEEEEEcccHHHHHHHHHHH
Q 001722 335 IRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRV 387 (1020)
Q Consensus 335 i~~~q~vII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~lA~qva~rv 387 (1020)
+..+..++|.|++|||||+.+.+++++.. ..+.+++++. ......++.+++
T Consensus 18 ~~~gs~~lI~G~pGsGKT~la~~~l~~~~-~~ge~~lyvs-~ee~~~~i~~~~ 68 (237)
T TIGR03877 18 IPERNVVLLSGGPGTGKSIFSQQFLWNGL-QMGEPGIYVA-LEEHPVQVRRNM 68 (237)
T ss_pred CcCCeEEEEEcCCCCCHHHHHHHHHHHHH-HcCCcEEEEE-eeCCHHHHHHHH
Confidence 34578999999999999999999998875 3355565553 223344555554
No 433
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=92.02 E-value=0.71 Score=53.03 Aligned_cols=37 Identities=22% Similarity=0.294 Sum_probs=27.1
Q ss_pred HHHHHHHHHHhCCeEEEEecCCCchHHHHHHHHHHhcc
Q 001722 327 VRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGY 364 (1020)
Q Consensus 327 ~q~eil~~i~~~q~vII~gpTGSGKTtqi~q~Lle~~~ 364 (1020)
..+++-.+...+..|+|.|++|+||++.+ .+|+....
T Consensus 11 ~~~~~~~~a~~~~pVLI~GE~GtGK~~lA-r~iH~~s~ 47 (329)
T TIGR02974 11 VLEQVSRLAPLDRPVLIIGERGTGKELIA-ARLHYLSK 47 (329)
T ss_pred HHHHHHHHhCCCCCEEEECCCCChHHHHH-HHHHHhcC
Confidence 44556666677889999999999999866 45555433
No 434
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=92.02 E-value=0.35 Score=59.70 Aligned_cols=59 Identities=19% Similarity=0.248 Sum_probs=37.3
Q ss_pred EchHHHHHHHhcCCCCCCccEEEEeCCCcCCCCccHHHHHHHHHHhhcCCceEEEEeccC
Q 001722 418 MTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTSATL 477 (1020)
Q Consensus 418 ~T~g~LLr~ll~d~~L~~~s~IIIDEaHERs~~tD~ll~lLk~il~~r~~lklIlmSATl 477 (1020)
.+.|.-.|..+....+.+.+++|+||+= -.++.+.--.+...+....++.-+|+.|.-+
T Consensus 486 LSGGQrQRialARAll~~~~IliLDE~T-SaLD~~te~~i~~~l~~~~~~~TvIiItHrl 544 (588)
T PRK11174 486 LSVGQAQRLALARALLQPCQLLLLDEPT-ASLDAHSEQLVMQALNAASRRQTTLMVTHQL 544 (588)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCc-cCCCHHHHHHHHHHHHHHhCCCEEEEEecCh
Confidence 4556666655555567788999999987 3555554444444444444566677777665
No 435
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=91.96 E-value=0.21 Score=61.36 Aligned_cols=68 Identities=21% Similarity=0.197 Sum_probs=53.2
Q ss_pred CcHHHHHHHHHHHHhC--CeEEEEecCCCchHHHHHHHHHHhcccCCCEEEEEcccHHHHHHHH-HHHHHH
Q 001722 323 PIFSVRDELLQVIREN--QVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVA-KRVSEE 390 (1020)
Q Consensus 323 Pi~~~q~eil~~i~~~--q~vII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~lA~qva-~rva~e 390 (1020)
-..+|+.++++++... +.|++++++-+|||+.+..++.-..-...+.+++++|+..+|.... .+|.-.
T Consensus 16 ~~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~~~n~~g~~i~~~P~~~l~v~Pt~~~a~~~~~~rl~Pm 86 (557)
T PF05876_consen 16 DRTPYLREIMDALSDPSVREVVVMKSAQVGKTELLLNWIGYSIDQDPGPMLYVQPTDDAAKDFSKERLDPM 86 (557)
T ss_pred CCChhHHHHHHhcCCcCccEEEEEEcchhhHhHHHHhhceEEEEeCCCCEEEEEEcHHHHHHHHHHHHHHH
Confidence 3678899999999766 5789999999999997766665554445678999999999998876 455433
No 436
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=91.93 E-value=0.44 Score=50.22 Aligned_cols=59 Identities=20% Similarity=0.237 Sum_probs=34.2
Q ss_pred EEEchHHHHHHHhcCCCCCCccEEEEeCCCcCCCCccH---HHHHHHHHHhhcCCceEEEEeccC
Q 001722 416 KYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDV---LFGILKKVVARRRDFKLIVTSATL 477 (1020)
Q Consensus 416 ~~~T~g~LLr~ll~d~~L~~~s~IIIDEaHERs~~tD~---ll~lLk~il~~r~~lklIlmSATl 477 (1020)
.-.+.|+..+..+....+.+..++|+||.- .+++... +..+++.+. .....+|+.|.-.
T Consensus 126 ~~LS~G~~qrv~la~al~~~p~llllDEPt-~~LD~~~~~~l~~~l~~~~--~~~~tii~~sH~~ 187 (198)
T TIGR01189 126 AQLSAGQQRRLALARLWLSRAPLWILDEPT-TALDKAGVALLAGLLRAHL--ARGGIVLLTTHQD 187 (198)
T ss_pred hhcCHHHHHHHHHHHHHhcCCCEEEEeCCC-cCCCHHHHHHHHHHHHHHH--hCCCEEEEEEccc
Confidence 345566655555544556788999999987 4555543 344444432 2244566666543
No 437
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=91.90 E-value=0.12 Score=55.43 Aligned_cols=24 Identities=25% Similarity=0.333 Sum_probs=20.3
Q ss_pred HHhCCeEEEEecCCCchHHHHHHH
Q 001722 335 IRENQVVVVVGETGSGKTTQLTQY 358 (1020)
Q Consensus 335 i~~~q~vII~gpTGSGKTtqi~q~ 358 (1020)
+..++.+.|+||.||||||.+-..
T Consensus 10 i~~Ge~~~l~G~NGsGKSTLlk~i 33 (213)
T PRK15177 10 MGYHEHIGILAAPGSGKTTLTRLL 33 (213)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHH
Confidence 457899999999999999987543
No 438
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.85 E-value=0.37 Score=51.17 Aligned_cols=70 Identities=13% Similarity=0.258 Sum_probs=37.6
Q ss_pred cEEEEchHHHHHHHhcCCCCCCccEEEEeCCCcCCCCcc---HHHHHHHHHHhhcCCceEEEEeccCCHHHHHHHh
Q 001722 414 LIKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTD---VLFGILKKVVARRRDFKLIVTSATLNAQKFSDFF 486 (1020)
Q Consensus 414 ~I~~~T~g~LLr~ll~d~~L~~~s~IIIDEaHERs~~tD---~ll~lLk~il~~r~~lklIlmSATld~~~f~~~f 486 (1020)
.+.-.+.|+..+..+....+.+..++|+||-= .+++.. .+..+++.+.... .. .++++.+-+.+.+.++.
T Consensus 115 ~~~~LS~Ge~qrl~laral~~~p~llllDEPt-~~LD~~~~~~~~~~l~~~~~~~-~~-t~ii~~~h~~~~~~~~~ 187 (202)
T cd03233 115 FVRGISGGERKRVSIAEALVSRASVLCWDNST-RGLDSSTALEILKCIRTMADVL-KT-TTFVSLYQASDEIYDLF 187 (202)
T ss_pred chhhCCHHHHHHHHHHHHHhhCCCEEEEcCCC-ccCCHHHHHHHHHHHHHHHHhC-CC-EEEEEEcCCHHHHHHhC
Confidence 33445667666655555556778899999965 445544 3445555543321 23 33444444344444443
No 439
>PRK10436 hypothetical protein; Provisional
Probab=91.79 E-value=0.32 Score=58.32 Aligned_cols=50 Identities=24% Similarity=0.282 Sum_probs=29.7
Q ss_pred CCcHHHHHHHHHH-HH-hCCeEEEEecCCCchHHHHHHHHHHhcccCCCEEEE
Q 001722 322 LPIFSVRDELLQV-IR-ENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGC 372 (1020)
Q Consensus 322 LPi~~~q~eil~~-i~-~~q~vII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~ 372 (1020)
|-..+.+.+.+.. +. .+-.++|+|||||||||.+-.. +........+|+-
T Consensus 200 LG~~~~~~~~l~~~~~~~~GliLvtGpTGSGKTTtL~a~-l~~~~~~~~~i~T 251 (462)
T PRK10436 200 LGMTPAQLAQFRQALQQPQGLILVTGPTGSGKTVTLYSA-LQTLNTAQINICS 251 (462)
T ss_pred cCcCHHHHHHHHHHHHhcCCeEEEECCCCCChHHHHHHH-HHhhCCCCCEEEE
Confidence 3444444444443 33 4568899999999999988443 3433333344443
No 440
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=91.78 E-value=0.73 Score=58.60 Aligned_cols=21 Identities=33% Similarity=0.463 Sum_probs=17.4
Q ss_pred CCeEEEEecCCCchHHHHHHH
Q 001722 338 NQVVVVVGETGSGKTTQLTQY 358 (1020)
Q Consensus 338 ~q~vII~gpTGSGKTtqi~q~ 358 (1020)
..++|++||+|+|||+.+-..
T Consensus 203 ~~n~lL~G~pG~GKT~l~~~l 223 (731)
T TIGR02639 203 KNNPLLVGEPGVGKTAIAEGL 223 (731)
T ss_pred CCceEEECCCCCCHHHHHHHH
Confidence 468999999999999986443
No 441
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=91.72 E-value=0.39 Score=51.11 Aligned_cols=59 Identities=20% Similarity=0.360 Sum_probs=35.7
Q ss_pred EEEchHHHHHHHhcCCCCCCccEEEEeCCCcCCCCcc---HHHHHHHHHHhhcCCceEEEEeccC
Q 001722 416 KYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTD---VLFGILKKVVARRRDFKLIVTSATL 477 (1020)
Q Consensus 416 ~~~T~g~LLr~ll~d~~L~~~s~IIIDEaHERs~~tD---~ll~lLk~il~~r~~lklIlmSATl 477 (1020)
.-.+.|+..+..+....+.+..++|+||.- .+++.. .+..+++.+.. ....+|+.|.-+
T Consensus 136 ~~LS~G~~qrl~la~al~~~p~lllLDEPt-~~LD~~~~~~l~~~l~~~~~--~~~tii~~tH~~ 197 (214)
T TIGR02673 136 EQLSGGEQQRVAIARAIVNSPPLLLADEPT-GNLDPDLSERILDLLKRLNK--RGTTVIVATHDL 197 (214)
T ss_pred hhCCHHHHHHHHHHHHHhCCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHHH--cCCEEEEEeCCH
Confidence 345666665555544456778999999976 455544 45555555432 245566666554
No 442
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=91.71 E-value=0.56 Score=56.19 Aligned_cols=31 Identities=29% Similarity=0.357 Sum_probs=21.9
Q ss_pred HHHHHHHhCC---eEEEEecCCCchHHHHHHHHH
Q 001722 330 ELLQVIRENQ---VVVVVGETGSGKTTQLTQYLL 360 (1020)
Q Consensus 330 eil~~i~~~q---~vII~gpTGSGKTtqi~q~Ll 360 (1020)
.+...+..++ .+++.||+|+||||.+-.+.-
T Consensus 28 ~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk 61 (451)
T PRK06305 28 VLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAK 61 (451)
T ss_pred HHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHH
Confidence 3444555553 478999999999998765543
No 443
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=91.64 E-value=0.48 Score=50.63 Aligned_cols=66 Identities=14% Similarity=0.295 Sum_probs=36.9
Q ss_pred EEEEchHHHHHHHhcCCCCCCccEEEEeCCCcCCCCcc---HHHHHHHHHHhhcCCceEEEEeccCCHHHHHHHh
Q 001722 415 IKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTD---VLFGILKKVVARRRDFKLIVTSATLNAQKFSDFF 486 (1020)
Q Consensus 415 I~~~T~g~LLr~ll~d~~L~~~s~IIIDEaHERs~~tD---~ll~lLk~il~~r~~lklIlmSATld~~~f~~~f 486 (1020)
+.-.+.|+..+..+....+.+.+++|+||.- .+++.. .++.+|+.+. .+..+|+.|.-+ +.+..+.
T Consensus 131 ~~~LS~G~~qrv~la~al~~~p~llllDEP~-~~LD~~~~~~l~~~l~~~~---~~~tii~~sH~~--~~~~~~~ 199 (220)
T cd03263 131 ARTLSGGMKRKLSLAIALIGGPSVLLLDEPT-SGLDPASRRAIWDLILEVR---KGRSIILTTHSM--DEAEALC 199 (220)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEECCCC-CCCCHHHHHHHHHHHHHHh---cCCEEEEEcCCH--HHHHHhc
Confidence 3345666665555554557788999999976 455544 3444444432 244455555543 3344443
No 444
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=91.60 E-value=0.18 Score=58.43 Aligned_cols=27 Identities=37% Similarity=0.689 Sum_probs=21.2
Q ss_pred HHHHHH-hCCeEEEEecCCCchHHHHHH
Q 001722 331 LLQVIR-ENQVVVVVGETGSGKTTQLTQ 357 (1020)
Q Consensus 331 il~~i~-~~q~vII~gpTGSGKTtqi~q 357 (1020)
+++.+. .+..++|+|||||||||.+-.
T Consensus 126 ~~~~~~~~~glilI~GpTGSGKTTtL~a 153 (358)
T TIGR02524 126 IIDAIAPQEGIVFITGATGSGKSTLLAA 153 (358)
T ss_pred HHHHHhccCCEEEEECCCCCCHHHHHHH
Confidence 444444 678999999999999998744
No 445
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=91.59 E-value=0.26 Score=56.31 Aligned_cols=44 Identities=20% Similarity=0.279 Sum_probs=33.1
Q ss_pred HHhCCeEEEEecCCCchHHHHHHHHHHhcccCCCEEEEEcccHHH
Q 001722 335 IRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVA 379 (1020)
Q Consensus 335 i~~~q~vII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~l 379 (1020)
+..+.++.|.||+||||||.+.+++.+... .++.++++-+--.+
T Consensus 52 lp~G~iteI~Gp~GsGKTtLal~~~~~~~~-~g~~~vyId~E~~~ 95 (325)
T cd00983 52 YPKGRIIEIYGPESSGKTTLALHAIAEAQK-LGGTVAFIDAEHAL 95 (325)
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHH-cCCCEEEECccccH
Confidence 455789999999999999999998877543 35667776554333
No 446
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=91.57 E-value=0.25 Score=52.35 Aligned_cols=61 Identities=15% Similarity=0.197 Sum_probs=36.4
Q ss_pred cEEEEchHHHHHHHhcCCCCCCccEEEEeCCCcCCCCcc---HHHHHHHHHHhhcCCceEEEEeccC
Q 001722 414 LIKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTD---VLFGILKKVVARRRDFKLIVTSATL 477 (1020)
Q Consensus 414 ~I~~~T~g~LLr~ll~d~~L~~~s~IIIDEaHERs~~tD---~ll~lLk~il~~r~~lklIlmSATl 477 (1020)
.+.-.+.|+..+..+....+.+..++|+||-- .+++.. .+..+|+.+.. ...-+|+.|.-+
T Consensus 123 ~~~~LS~G~~qrv~laral~~~p~llllDEPt-~~LD~~~~~~l~~~l~~~~~--~~~tii~~sH~~ 186 (205)
T cd03226 123 HPLSLSGGQKQRLAIAAALLSGKDLLIFDEPT-SGLDYKNMERVGELIRELAA--QGKAVIVITHDY 186 (205)
T ss_pred CchhCCHHHHHHHHHHHHHHhCCCEEEEeCCC-ccCCHHHHHHHHHHHHHHHH--CCCEEEEEeCCH
Confidence 34456667666655554556678899999976 455544 45555555432 244566666544
No 447
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=91.57 E-value=0.49 Score=51.56 Aligned_cols=65 Identities=15% Similarity=0.345 Sum_probs=42.4
Q ss_pred EchHHHHHHHhcCCCCCCccEEEEeCCCcCCCCc---cHHHHHHHHHHhhcCCceEEEEeccCC-HHHHHH
Q 001722 418 MTDGVLLRETLKDSDLDKYRVIVMDEAHERSLST---DVLFGILKKVVARRRDFKLIVTSATLN-AQKFSD 484 (1020)
Q Consensus 418 ~T~g~LLr~ll~d~~L~~~s~IIIDEaHERs~~t---D~ll~lLk~il~~r~~lklIlmSATld-~~~f~~ 484 (1020)
.+-|.+.|-.+......+..++|+||.= -.++. ..++.+|.++.+.+ ++-+|+.|.-+. +..+++
T Consensus 142 LSGGQ~QRiaIARAL~~~PklLIlDEpt-SaLD~siQa~IlnlL~~l~~~~-~lt~l~IsHdl~~v~~~cd 210 (252)
T COG1124 142 LSGGQRQRIAIARALIPEPKLLILDEPT-SALDVSVQAQILNLLLELKKER-GLTYLFISHDLALVEHMCD 210 (252)
T ss_pred cChhHHHHHHHHHHhccCCCEEEecCch-hhhcHHHHHHHHHHHHHHHHhc-CceEEEEeCcHHHHHHHhh
Confidence 4556676666666666778999999986 23333 34566666665544 788999988774 344444
No 448
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=91.55 E-value=0.44 Score=53.28 Aligned_cols=59 Identities=20% Similarity=0.230 Sum_probs=35.3
Q ss_pred EchHHHHHHHhcCCCCCCccEEEEeCCCcCCCCccHHHHHHHHHHhhcCCceEEEEeccC
Q 001722 418 MTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTSATL 477 (1020)
Q Consensus 418 ~T~g~LLr~ll~d~~L~~~s~IIIDEaHERs~~tD~ll~lLk~il~~r~~lklIlmSATl 477 (1020)
.+.|+..+..+....+.+-+++|+||.= .+++......+...+.....+..+|+.|.-+
T Consensus 139 LS~G~~qrl~LaRall~~p~illlDEpt-s~LD~~~~~~l~~~l~~~~~~~tii~isH~~ 197 (275)
T cd03289 139 LSHGHKQLMCLARSVLSKAKILLLDEPS-AHLDPITYQVIRKTLKQAFADCTVILSEHRI 197 (275)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECcc-ccCCHHHHHHHHHHHHHhcCCCEEEEEECCH
Confidence 5667766666666667788999999976 4555443333333333333355566666554
No 449
>CHL00176 ftsH cell division protein; Validated
Probab=91.54 E-value=0.79 Score=57.18 Aligned_cols=24 Identities=33% Similarity=0.382 Sum_probs=18.9
Q ss_pred CCeEEEEecCCCchHHHHHHHHHH
Q 001722 338 NQVVVVVGETGSGKTTQLTQYLLE 361 (1020)
Q Consensus 338 ~q~vII~gpTGSGKTtqi~q~Lle 361 (1020)
.+.+++.||+|+|||+.+-....+
T Consensus 216 p~gVLL~GPpGTGKT~LAralA~e 239 (638)
T CHL00176 216 PKGVLLVGPPGTGKTLLAKAIAGE 239 (638)
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999987554443
No 450
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=91.53 E-value=0.7 Score=52.83 Aligned_cols=53 Identities=15% Similarity=0.149 Sum_probs=34.1
Q ss_pred HHHHHhcCCCCCCccEEEEeCCCcCCCCccHHHHHHHHHHhhcCCceEEEEeccC
Q 001722 423 LLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTSATL 477 (1020)
Q Consensus 423 LLr~ll~d~~L~~~s~IIIDEaHERs~~tD~ll~lLk~il~~r~~lklIlmSATl 477 (1020)
+...+...+....+.+||||+||. ++..-.-++||.+-.-.++..+|++|...
T Consensus 101 l~~~~~~~p~~g~~kV~iI~~ae~--m~~~AaNaLLKtLEEPp~~~~fiL~~~~~ 153 (319)
T PRK08769 101 ISQKLALTPQYGIAQVVIVDPADA--INRAACNALLKTLEEPSPGRYLWLISAQP 153 (319)
T ss_pred HHHHHhhCcccCCcEEEEeccHhh--hCHHHHHHHHHHhhCCCCCCeEEEEECCh
Confidence 444445567778899999999993 45555666777554333455666665543
No 451
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=91.46 E-value=1.1 Score=51.64 Aligned_cols=51 Identities=24% Similarity=0.242 Sum_probs=32.3
Q ss_pred HHHHHHHH-HHhCCeEEEEecCCCchHHHHHHHHHHhcccCCCEEEEEcccHHH
Q 001722 327 VRDELLQV-IRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVA 379 (1020)
Q Consensus 327 ~q~eil~~-i~~~q~vII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~l 379 (1020)
.+.+++.. +..+.+++|+|+|||||||.+-.. +... ....+++++.-..++
T Consensus 166 ~~~~~L~~~v~~~~~ili~G~tGsGKTTll~al-~~~i-~~~~riv~iEd~~El 217 (340)
T TIGR03819 166 GVARLLRAIVAARLAFLISGGTGSGKTTLLSAL-LALV-APDERIVLVEDAAEL 217 (340)
T ss_pred HHHHHHHHHHhCCCeEEEECCCCCCHHHHHHHH-HccC-CCCCcEEEECCccee
Confidence 34444444 556789999999999999987443 3322 233456666554443
No 452
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=91.44 E-value=0.31 Score=58.78 Aligned_cols=54 Identities=22% Similarity=0.336 Sum_probs=36.0
Q ss_pred HHHHHhcCCCCCCccEEEEeCCCcCCCCccHHHHHHHHHHhhcCCceEEEEeccCCHH
Q 001722 423 LLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTSATLNAQ 480 (1020)
Q Consensus 423 LLr~ll~d~~L~~~s~IIIDEaHERs~~tD~ll~lLk~il~~r~~lklIlmSATld~~ 480 (1020)
|......-|.-.+|.+.||||+| ++.+...-++||.+-.-.++ |++.=||-+..
T Consensus 107 i~e~v~y~P~~~ryKVyiIDEvH--MLS~~afNALLKTLEEPP~h--V~FIlATTe~~ 160 (515)
T COG2812 107 IIEKVNYAPSEGRYKVYIIDEVH--MLSKQAFNALLKTLEEPPSH--VKFILATTEPQ 160 (515)
T ss_pred HHHHhccCCccccceEEEEecHH--hhhHHHHHHHhcccccCccC--eEEEEecCCcC
Confidence 44445556788999999999999 56666677777776443334 44444665443
No 453
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=91.44 E-value=0.73 Score=59.19 Aligned_cols=112 Identities=21% Similarity=0.267 Sum_probs=82.6
Q ss_pred CEEEEcCCHHHHHHHHHHHHHHHHHhhccccCCCCCeEEEEecCCCCHHHHHHHHHHhcCC--CeEEEEecchhhccCCC
Q 001722 532 DILIFMTGQDEIEAACFALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEG--TRKCIVATNIAETSLTV 609 (1020)
Q Consensus 532 ~ILVFl~g~~eie~l~~~L~e~l~~l~~~~~~~~~~l~vl~lhs~L~~~eq~~I~~~f~~g--~rkVIVATniaEtGItI 609 (1020)
++|||..-..-...+...|... ++..+.++|+++...|..+++.|..+ ..-++++|-....|+|.
T Consensus 713 kvlifsq~t~~l~il~~~l~~~-------------~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~kagg~glnL 779 (866)
T COG0553 713 KVLIFSQFTPVLDLLEDYLKAL-------------GIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLKAGGLGLNL 779 (866)
T ss_pred cEEEEeCcHHHHHHHHHHHHhc-------------CCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEecccccceee
Confidence 6888888777666555555431 36788999999999999999999875 56677788899999999
Q ss_pred CCeeEEEEcCCccceeccCCCCcccccccccCHHHHHHHhcccCCCCCCEEEEccChhhHhh
Q 001722 610 DGIFYVIDTGYGKMKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTGPGTCYRLYTESAYLN 671 (1020)
Q Consensus 610 p~V~~VID~G~~K~~~yd~~~g~~~L~~~piS~as~~QRaGRAGR~g~G~cyrLyt~~~~~~ 671 (1020)
-+-..||. ||+-- .|.-..++..|+-|.|+..+=..|++.++...+.
T Consensus 780 t~a~~vi~--------~d~~w-------np~~~~Qa~dRa~RigQ~~~v~v~r~i~~~tiEe 826 (866)
T COG0553 780 TGADTVIL--------FDPWW-------NPAVELQAIDRAHRIGQKRPVKVYRLITRGTIEE 826 (866)
T ss_pred cccceEEE--------ecccc-------ChHHHHHHHHHHHHhcCcceeEEEEeecCCcHHH
Confidence 99999996 66311 1333344555555556666789999999887644
No 454
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=91.43 E-value=1.6 Score=49.93 Aligned_cols=52 Identities=15% Similarity=0.204 Sum_probs=33.2
Q ss_pred HHHHHHhcCCCCCCccEEEEeCCCcCCCCccHHHHHHHHHHhhcCCceEEEEecc
Q 001722 422 VLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTSAT 476 (1020)
Q Consensus 422 ~LLr~ll~d~~L~~~s~IIIDEaHERs~~tD~ll~lLk~il~~r~~lklIlmSAT 476 (1020)
-+...+...|....+.+||||+||. ++....-.+||.+ ...|+..+|+++..
T Consensus 111 ~i~~~l~~~p~~~~~kVvII~~ae~--m~~~aaNaLLK~L-EEPp~~~fILi~~~ 162 (314)
T PRK07399 111 EIKRFLSRPPLEAPRKVVVIEDAET--MNEAAANALLKTL-EEPGNGTLILIAPS 162 (314)
T ss_pred HHHHHHccCcccCCceEEEEEchhh--cCHHHHHHHHHHH-hCCCCCeEEEEECC
Confidence 3455555667788999999999994 3444444555554 44556656665543
No 455
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.43 E-value=0.86 Score=49.30 Aligned_cols=62 Identities=13% Similarity=0.201 Sum_probs=37.8
Q ss_pred cEEEEchHHHHHHHhcCCCCCCccEEEEeCCCcCCCCccH---HHHHHHHHHhhcCCceEEEEeccC
Q 001722 414 LIKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDV---LFGILKKVVARRRDFKLIVTSATL 477 (1020)
Q Consensus 414 ~I~~~T~g~LLr~ll~d~~L~~~s~IIIDEaHERs~~tD~---ll~lLk~il~~r~~lklIlmSATl 477 (1020)
.+.-.+.|...+..+....+.+..++|+||.. .+++.+. +..+++.+... ....+|+.|--+
T Consensus 127 ~~~~lS~G~~qrl~laral~~~p~llllDEP~-~gLD~~~~~~l~~~l~~~~~~-~~~tiii~sh~~ 191 (232)
T cd03300 127 KPSQLSGGQQQRVAIARALVNEPKVLLLDEPL-GALDLKLRKDMQLELKRLQKE-LGITFVFVTHDQ 191 (232)
T ss_pred ChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc-ccCCHHHHHHHHHHHHHHHHH-cCCEEEEEeCCH
Confidence 33456677666655555557778999999998 5665543 44444444322 245667766554
No 456
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=91.37 E-value=0.54 Score=57.31 Aligned_cols=59 Identities=15% Similarity=0.209 Sum_probs=37.0
Q ss_pred EchHHHHHHHhcCCCCCCccEEEEeCCCcCCCCccHHHHHHHHHHhhcCCceEEEEeccC
Q 001722 418 MTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTSATL 477 (1020)
Q Consensus 418 ~T~g~LLr~ll~d~~L~~~s~IIIDEaHERs~~tD~ll~lLk~il~~r~~lklIlmSATl 477 (1020)
.+.|.-.|..+....+.+.+++|+||+= -+++.+.--.+...+.....+..+|+.|.-+
T Consensus 459 LSgGq~qri~laRal~~~~~ililDE~t-s~lD~~~~~~i~~~l~~~~~~~t~i~itH~~ 517 (529)
T TIGR02857 459 LSGGQAQRLALARAFLRDAPLLLLDEPT-AHLDAETEALVTEALRALAQGRTVLLVTHRL 517 (529)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCcc-cccCHHHHHHHHHHHHHhcCCCEEEEEecCH
Confidence 4556655555555567788999999987 4555554444444444444566677777665
No 457
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=91.32 E-value=0.37 Score=55.15 Aligned_cols=53 Identities=11% Similarity=0.187 Sum_probs=33.1
Q ss_pred HHHHHHhcCCCCCCccEEEEeCCCcCCCCccHHHHHHHHHHhhcCCceEEEEecc
Q 001722 422 VLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTSAT 476 (1020)
Q Consensus 422 ~LLr~ll~d~~L~~~s~IIIDEaHERs~~tD~ll~lLk~il~~r~~lklIlmSAT 476 (1020)
.+...+...+....+.++|||+||. ++....-++||.+-.-.++.-+|++|..
T Consensus 94 ~l~~~~~~~~~~g~~KV~iI~~a~~--m~~~AaNaLLKtLEEPp~~~~fiL~t~~ 146 (325)
T PRK06871 94 EINEKVSQHAQQGGNKVVYIQGAER--LTEAAANALLKTLEEPRPNTYFLLQADL 146 (325)
T ss_pred HHHHHHhhccccCCceEEEEechhh--hCHHHHHHHHHHhcCCCCCeEEEEEECC
Confidence 3444555567788999999999993 4455556666665443334444444433
No 458
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=91.28 E-value=1.3 Score=48.78 Aligned_cols=125 Identities=20% Similarity=0.272 Sum_probs=61.3
Q ss_pred HHHHHHhCC-eEEEEecCCCchHHHHHHHHHHhcccCCCEEE-EE-cccHHHHHHHHHHHHHHhccccCCEEEEEEeeee
Q 001722 331 LLQVIRENQ-VVVVVGETGSGKTTQLTQYLLEDGYTTNGIVG-CT-QPRRVAAMSVAKRVSEEMDTELGDKVGYAIRFED 407 (1020)
Q Consensus 331 il~~i~~~q-~vII~gpTGSGKTtqi~q~Lle~~~~~~~~Il-~t-qPrR~lA~qva~rva~e~~~~lG~~VGy~ir~e~ 407 (1020)
+-..+..++ .+.|+|+-|||||+..- .+++..-. +..++ ++ -|+-..+. +..++...+..
T Consensus 43 l~~~i~d~qg~~~vtGevGsGKTv~~R-al~~s~~~-d~~~~v~i~~~~~s~~~-~~~ai~~~l~~-------------- 105 (269)
T COG3267 43 LHAAIADGQGILAVTGEVGSGKTVLRR-ALLASLNE-DQVAVVVIDKPTLSDAT-LLEAIVADLES-------------- 105 (269)
T ss_pred HHHHHhcCCceEEEEecCCCchhHHHH-HHHHhcCC-CceEEEEecCcchhHHH-HHHHHHHHhcc--------------
Confidence 445677888 89999999999999876 45444332 22222 22 34433333 33333332221
Q ss_pred cCCCCccEEEEchHHHHHHHhcC-CCCCCccEEEEeCCCcCCCCccHHHHHHHHHHhhc-CCceEEEEec
Q 001722 408 VTGPSTLIKYMTDGVLLRETLKD-SDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARR-RDFKLIVTSA 475 (1020)
Q Consensus 408 ~~s~~t~I~~~T~g~LLr~ll~d-~~L~~~s~IIIDEaHERs~~tD~ll~lLk~il~~r-~~lklIlmSA 475 (1020)
.+...+-... ....+.+..- .....--++++||||.-+.+.+-.+.++-...... ..+++++.--
T Consensus 106 --~p~~~~~~~~-e~~~~~L~al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gq 172 (269)
T COG3267 106 --QPKVNVNAVL-EQIDRELAALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQ 172 (269)
T ss_pred --CccchhHHHH-HHHHHHHHHHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCC
Confidence 1111111111 1122222211 11233368999999966655554444444443322 2245555433
No 459
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=91.28 E-value=0.62 Score=49.21 Aligned_cols=58 Identities=14% Similarity=0.134 Sum_probs=34.4
Q ss_pred EEchHHHHHHHhcCCCCCCccEEEEeCCCcCCCCcc---HHHHHHHHHHhhcCCceEEEEeccC
Q 001722 417 YMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTD---VLFGILKKVVARRRDFKLIVTSATL 477 (1020)
Q Consensus 417 ~~T~g~LLr~ll~d~~L~~~s~IIIDEaHERs~~tD---~ll~lLk~il~~r~~lklIlmSATl 477 (1020)
-.+.|...+..+....+.+..++|+||.= .+++.. .+..+|+.+. .....+|+.|...
T Consensus 127 ~LS~G~~~rv~laral~~~p~~lilDEP~-~~LD~~~~~~l~~~l~~~~--~~~~tiii~sh~~ 187 (200)
T PRK13540 127 LLSSGQKRQVALLRLWMSKAKLWLLDEPL-VALDELSLLTIITKIQEHR--AKGGAVLLTSHQD 187 (200)
T ss_pred hcCHHHHHHHHHHHHHhcCCCEEEEeCCC-cccCHHHHHHHHHHHHHHH--HcCCEEEEEeCCc
Confidence 35556555554444456677899999976 345443 4445555532 2255677777665
No 460
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=91.25 E-value=0.18 Score=54.20 Aligned_cols=37 Identities=32% Similarity=0.351 Sum_probs=28.2
Q ss_pred hCCeEEEEecCCCchHHHHHHHHHHhcccCCCEEEEE
Q 001722 337 ENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCT 373 (1020)
Q Consensus 337 ~~q~vII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~t 373 (1020)
.+..++|.|++|||||+...|++.+.....+.+++++
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyv 54 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYV 54 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEE
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEE
Confidence 5789999999999999999999988755413445554
No 461
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=91.23 E-value=0.52 Score=58.29 Aligned_cols=59 Identities=14% Similarity=0.190 Sum_probs=39.5
Q ss_pred EchHHHHHHHhcCCCCCCccEEEEeCCCcCCCCccHHHHHHHHHHhhcCCceEEEEeccC
Q 001722 418 MTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTSATL 477 (1020)
Q Consensus 418 ~T~g~LLr~ll~d~~L~~~s~IIIDEaHERs~~tD~ll~lLk~il~~r~~lklIlmSATl 477 (1020)
.+.|...|..+....+.+.+++|+||+- -+++.+.-..+++.+....++..+|+.|.-+
T Consensus 472 LSgGq~QRialARall~~~~iliLDEpt-s~LD~~t~~~i~~~l~~~~~~~tvIiitHr~ 530 (588)
T PRK13657 472 LSGGERQRLAIARALLKDPPILILDEAT-SALDVETEAKVKAALDELMKGRTTFIIAHRL 530 (588)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCc-cCCCHHHHHHHHHHHHHHhcCCEEEEEEecH
Confidence 4556666655555567888999999987 5666665555555555444566677777665
No 462
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=91.20 E-value=3.1 Score=47.15 Aligned_cols=129 Identities=17% Similarity=0.146 Sum_probs=54.7
Q ss_pred EEEecCCCchHHHHHHHHHHhcccCC--CEEEEEcccHHHHHHHHHHHHHHhccccCC--EEEEEEeeeec--CCCCccE
Q 001722 342 VVVGETGSGKTTQLTQYLLEDGYTTN--GIVGCTQPRRVAAMSVAKRVSEEMDTELGD--KVGYAIRFEDV--TGPSTLI 415 (1020)
Q Consensus 342 II~gpTGSGKTtqi~q~Lle~~~~~~--~~Il~tqPrR~lA~qva~rva~e~~~~lG~--~VGy~ir~e~~--~s~~t~I 415 (1020)
+|.|+.|+|||+.+...++....... ..++++.....+...+.... ......... .+.+.-..+.. ......|
T Consensus 1 ~i~~~r~~GKT~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~nG~~i 79 (384)
T PF03237_consen 1 LINGGRGSGKTTLIAIWFLWWALTRPPGRRVIIASTYRQARDIFGRFW-KGIIELLPSWFEIKFNEWNDRKIILPNGSRI 79 (384)
T ss_dssp -EEE-SSS-HHHHHHHHHHHHHHSSSS--EEEEEESSHHHHHHHHHHH-HHHHHTS-TTTS--EEEE-SSEEEETTS-EE
T ss_pred CCcCCccccHHHHHHHHHHHHHhhCCCCcEEEEecCHHHHHHHHHHhH-HHHHHHHHHhcCcccccCCCCcEEecCceEE
Confidence 57899999999998777766655544 35666644444444433321 111111111 11221111111 1234446
Q ss_pred EEEchHH--HHHHHhcCCCCCCccEEEEeCCCcCCCCccHHHHHHHHHHhhcCCceEEEEeccC
Q 001722 416 KYMTDGV--LLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTSATL 477 (1020)
Q Consensus 416 ~~~T~g~--LLr~ll~d~~L~~~s~IIIDEaHERs~~tD~ll~lLk~il~~r~~lklIlmSATl 477 (1020)
.+.+..- -...+.. ..+++||+||+-. +.-+....++............++.|-|.
T Consensus 80 ~~~~~~~~~~~~~~~G----~~~~~i~iDE~~~--~~~~~~~~~~~~~~~~~~~~~~~~~s~p~ 137 (384)
T PF03237_consen 80 QFRGADSPDSGDNIRG----FEYDLIIIDEAAK--VPDDAFSELIRRLRATWGGSIRMYISTPP 137 (384)
T ss_dssp EEES-----SHHHHHT----S--SEEEEESGGG--STTHHHHHHHHHHHHCSTT--EEEEEE--
T ss_pred EEeccccccccccccc----cccceeeeeeccc--CchHHHHHHHHhhhhcccCcceEEeecCC
Confidence 6665321 1111222 5678999999652 22234444455554444434433555555
No 463
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=91.19 E-value=0.66 Score=49.01 Aligned_cols=61 Identities=20% Similarity=0.249 Sum_probs=36.9
Q ss_pred EEEEchHHHHHHHhcCCCCCCccEEEEeCCCcCCCCcc---HHHHHHHHHHhhcCCceEEEEeccCC
Q 001722 415 IKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTD---VLFGILKKVVARRRDFKLIVTSATLN 478 (1020)
Q Consensus 415 I~~~T~g~LLr~ll~d~~L~~~s~IIIDEaHERs~~tD---~ll~lLk~il~~r~~lklIlmSATld 478 (1020)
+.-.+.|+..+..+....+.+.+++|+||.- .+++.. .+..+++.+.. ....+|+.|.-++
T Consensus 132 ~~~lS~G~~qr~~laral~~~p~llllDEPt-~~LD~~~~~~l~~~l~~~~~--~~~tii~~sh~~~ 195 (206)
T TIGR03608 132 IYELSGGEQQRVALARAILKDPPLILADEPT-GSLDPKNRDEVLDLLLELND--EGKTIIIVTHDPE 195 (206)
T ss_pred hhhCCHHHHHHHHHHHHHHcCCCEEEEeCCc-CCCCHHHHHHHHHHHHHHHh--cCCEEEEEeCCHH
Confidence 3345566655555444456788999999977 455544 45555555432 2556777676653
No 464
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=91.18 E-value=0.47 Score=57.44 Aligned_cols=21 Identities=29% Similarity=0.373 Sum_probs=16.9
Q ss_pred hCCeEEEEecCCCchHHHHHH
Q 001722 337 ENQVVVVVGETGSGKTTQLTQ 357 (1020)
Q Consensus 337 ~~q~vII~gpTGSGKTtqi~q 357 (1020)
..+.+++.||+|||||+.+-.
T Consensus 215 ~p~GILLyGPPGTGKT~LAKA 235 (512)
T TIGR03689 215 PPKGVLLYGPPGCGKTLIAKA 235 (512)
T ss_pred CCcceEEECCCCCcHHHHHHH
Confidence 346799999999999986533
No 465
>PRK09354 recA recombinase A; Provisional
Probab=91.17 E-value=0.34 Score=55.91 Aligned_cols=41 Identities=22% Similarity=0.316 Sum_probs=31.7
Q ss_pred HHhCCeEEEEecCCCchHHHHHHHHHHhcccCCCEEEEEccc
Q 001722 335 IRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPR 376 (1020)
Q Consensus 335 i~~~q~vII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPr 376 (1020)
+..+.++.|.||+||||||...+++.+... .++.++++-.-
T Consensus 57 ip~G~IteI~G~~GsGKTtLal~~~~~~~~-~G~~~~yId~E 97 (349)
T PRK09354 57 LPRGRIVEIYGPESSGKTTLALHAIAEAQK-AGGTAAFIDAE 97 (349)
T ss_pred CcCCeEEEEECCCCCCHHHHHHHHHHHHHH-cCCcEEEECCc
Confidence 445789999999999999999998887643 35677776443
No 466
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=91.16 E-value=0.16 Score=54.96 Aligned_cols=44 Identities=11% Similarity=0.055 Sum_probs=33.5
Q ss_pred HHHHHHhCCeEEEEecCCCchHHHHHHHHHHhcccCCCEEEEEc
Q 001722 331 LLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQ 374 (1020)
Q Consensus 331 il~~i~~~q~vII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tq 374 (1020)
++.-+..++.++|.|+||+|||+.+.++++......+..++++.
T Consensus 6 ~~~Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s 49 (242)
T cd00984 6 LTGGLQPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFS 49 (242)
T ss_pred hhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEe
Confidence 33445678899999999999999998888776554355666654
No 467
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=91.14 E-value=0.4 Score=54.87 Aligned_cols=23 Identities=35% Similarity=0.361 Sum_probs=18.7
Q ss_pred CeEEEEecCCCchHHHHHHHHHH
Q 001722 339 QVVVVVGETGSGKTTQLTQYLLE 361 (1020)
Q Consensus 339 q~vII~gpTGSGKTtqi~q~Lle 361 (1020)
..+++.||+|+|||+.+-.+..+
T Consensus 52 ~~~ll~GppG~GKT~la~~ia~~ 74 (328)
T PRK00080 52 DHVLLYGPPGLGKTTLANIIANE 74 (328)
T ss_pred CcEEEECCCCccHHHHHHHHHHH
Confidence 57999999999999988654443
No 468
>PHA00729 NTP-binding motif containing protein
Probab=91.12 E-value=0.43 Score=51.74 Aligned_cols=22 Identities=36% Similarity=0.431 Sum_probs=17.9
Q ss_pred CeEEEEecCCCchHHHHHHHHH
Q 001722 339 QVVVVVGETGSGKTTQLTQYLL 360 (1020)
Q Consensus 339 q~vII~gpTGSGKTtqi~q~Ll 360 (1020)
.+++|.|++|+||||.+...+.
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~ 39 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVAR 39 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999998755443
No 469
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=91.02 E-value=0.95 Score=54.85 Aligned_cols=138 Identities=22% Similarity=0.287 Sum_probs=69.2
Q ss_pred CeEEEEecCCCchHHHHHHHHHHhcccCCCEEEEEcccHHHHHHHHHHHHHHhccccCCEEEEEEeeeecCCCCccEEEE
Q 001722 339 QVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELGDKVGYAIRFEDVTGPSTLIKYM 418 (1020)
Q Consensus 339 q~vII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~lA~qva~rva~e~~~~lG~~VGy~ir~e~~~s~~t~I~~~ 418 (1020)
.-|+++||+|||||+.+-...-|.+.. -|-|=-| +.++..+|.
T Consensus 546 sGvLL~GPPGCGKTLlAKAVANEag~N---FisVKGP-------------ELlNkYVGE--------------------- 588 (802)
T KOG0733|consen 546 SGVLLCGPPGCGKTLLAKAVANEAGAN---FISVKGP-------------ELLNKYVGE--------------------- 588 (802)
T ss_pred CceEEeCCCCccHHHHHHHHhhhccCc---eEeecCH-------------HHHHHHhhh---------------------
Confidence 568999999999998775544444321 1222223 112211221
Q ss_pred chHHHHHHHhcCCCCCCccEEEEeCCCc----CCCC-ccHHHHHHHHHHh----hcCCceEEEEeccCCHHHHHHHhCCC
Q 001722 419 TDGVLLRETLKDSDLDKYRVIVMDEAHE----RSLS-TDVLFGILKKVVA----RRRDFKLIVTSATLNAQKFSDFFGSV 489 (1020)
Q Consensus 419 T~g~LLr~ll~d~~L~~~s~IIIDEaHE----Rs~~-tD~ll~lLk~il~----~r~~lklIlmSATld~~~f~~~f~~~ 489 (1020)
.+.-.|.+....--+...+|.+||++- |+-. +..--.++..++. ......|.++-||--++.+ .
T Consensus 589 -SErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiI------D 661 (802)
T KOG0733|consen 589 -SERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDII------D 661 (802)
T ss_pred -HHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCccc------c
Confidence 123334443333345567899999983 3221 1222223333332 2223467777888633322 2
Q ss_pred CeEeecCcccceeeeecCCCchhHHHHHHHHHH
Q 001722 490 PIFHIPGRTFPVNTLYSKTPCEDYVEAAVKQAM 522 (1020)
Q Consensus 490 pvi~i~gr~~pV~i~y~~~~~~dyl~~av~~~l 522 (1020)
|.+.-|||. -.+.|...|...--.+.+++..
T Consensus 662 pAiLRPGRl--Dk~LyV~lPn~~eR~~ILK~~t 692 (802)
T KOG0733|consen 662 PAILRPGRL--DKLLYVGLPNAEERVAILKTIT 692 (802)
T ss_pred hhhcCCCcc--CceeeecCCCHHHHHHHHHHHh
Confidence 344456764 3456666665554445554443
No 470
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.01 E-value=0.75 Score=49.69 Aligned_cols=67 Identities=12% Similarity=0.287 Sum_probs=38.9
Q ss_pred EEEchHHHHHHHhcCCCCCCccEEEEeCCCcCCCCcc---HHHHHHHHHHhhcCCceEEEEeccCCHHHHHHHh
Q 001722 416 KYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTD---VLFGILKKVVARRRDFKLIVTSATLNAQKFSDFF 486 (1020)
Q Consensus 416 ~~~T~g~LLr~ll~d~~L~~~s~IIIDEaHERs~~tD---~ll~lLk~il~~r~~lklIlmSATld~~~f~~~f 486 (1020)
.-.+.|+..+..+....+.+.+++|+||-- .+++.. .+..+++.+... ...-+|+.|.-+ +.+..+.
T Consensus 139 ~~LS~G~~qrv~la~al~~~p~lllLDEP~-~~LD~~~~~~l~~~l~~~~~~-~~~tvii~sH~~--~~~~~~~ 208 (233)
T cd03258 139 AQLSGGQKQRVGIARALANNPKVLLCDEAT-SALDPETTQSILALLRDINRE-LGLTIVLITHEM--EVVKRIC 208 (233)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEecCCC-CcCCHHHHHHHHHHHHHHHHH-cCCEEEEEeCCH--HHHHHhC
Confidence 345666666555555557788999999987 455554 344455544322 245566666654 3444444
No 471
>PF00265 TK: Thymidine kinase; InterPro: IPR001267 Thymidine kinase (TK) (2.7.1.21 from EC) is an ubiquitous enzyme that catalyzes the ATP-dependent phosphorylation of thymidine. Two different families of Thymidine kinase have been identified [, ] and are represented in this entry; one groups together Thymidine kinase from herpesviruses, as well as cytosolic thymidylate kinases and the second family groups Thymidine kinase from various sources that include, vertebrates, bacteria, the Bacteriophage T4, poxviruses, African swine fever virus (ASFV) and Fish lymphocystis disease virus (FLDV). The major capsid protein of insect iridescent viruses also belongs to this family.; GO: 0004797 thymidine kinase activity, 0005524 ATP binding; PDB: 1XX6_B 2J9R_A 2J87_B 3E2I_A 2JA1_A 2UZ3_B 2B8T_B 2WVJ_A 1W4R_F 1XBT_F ....
Probab=90.96 E-value=0.41 Score=50.04 Aligned_cols=38 Identities=21% Similarity=0.232 Sum_probs=28.4
Q ss_pred CCeEEEEecCCCchHHHHHHHHHHhcccCCCEEEEEccc
Q 001722 338 NQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPR 376 (1020)
Q Consensus 338 ~q~vII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPr 376 (1020)
++..++.||=+|||||.+...+....+ .+.+++++.|.
T Consensus 1 g~l~~i~GpM~sGKS~eLi~~~~~~~~-~~~~v~~~kp~ 38 (176)
T PF00265_consen 1 GKLEFITGPMFSGKSTELIRRIHRYEI-AGKKVLVFKPA 38 (176)
T ss_dssp -EEEEEEESTTSSHHHHHHHHHHHHHH-TT-EEEEEEES
T ss_pred CEEEEEECCcCChhHHHHHHHHHHHHh-CCCeEEEEEec
Confidence 356789999999999999887765433 35688888884
No 472
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=90.95 E-value=0.6 Score=49.42 Aligned_cols=23 Identities=39% Similarity=0.560 Sum_probs=19.9
Q ss_pred HHhCCeEEEEecCCCchHHHHHH
Q 001722 335 IRENQVVVVVGETGSGKTTQLTQ 357 (1020)
Q Consensus 335 i~~~q~vII~gpTGSGKTtqi~q 357 (1020)
+..++.+.|+|+.||||||.+-.
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~ 45 (201)
T cd03231 23 LAAGEALQVTGPNGSGKTTLLRI 45 (201)
T ss_pred EcCCCEEEEECCCCCCHHHHHHH
Confidence 45799999999999999998644
No 473
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=90.95 E-value=0.57 Score=59.45 Aligned_cols=19 Identities=37% Similarity=0.482 Sum_probs=16.0
Q ss_pred eEEEEecCCCchHHHHHHH
Q 001722 340 VVVVVGETGSGKTTQLTQY 358 (1020)
Q Consensus 340 ~vII~gpTGSGKTtqi~q~ 358 (1020)
.++++||||+|||+.+-..
T Consensus 490 ~~Lf~GP~GvGKT~lAk~L 508 (758)
T PRK11034 490 SFLFAGPTGVGKTEVTVQL 508 (758)
T ss_pred eEEEECCCCCCHHHHHHHH
Confidence 5899999999999987543
No 474
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=90.94 E-value=0.91 Score=58.73 Aligned_cols=23 Identities=30% Similarity=0.466 Sum_probs=18.5
Q ss_pred hCCeEEEEecCCCchHHHHHHHH
Q 001722 337 ENQVVVVVGETGSGKTTQLTQYL 359 (1020)
Q Consensus 337 ~~q~vII~gpTGSGKTtqi~q~L 359 (1020)
...++|++||+|+|||+.+-.++
T Consensus 193 ~~~n~lL~G~pGvGKT~l~~~la 215 (852)
T TIGR03346 193 TKNNPVLIGEPGVGKTAIVEGLA 215 (852)
T ss_pred CCCceEEEcCCCCCHHHHHHHHH
Confidence 34689999999999999875443
No 475
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=90.94 E-value=1 Score=51.48 Aligned_cols=27 Identities=30% Similarity=0.481 Sum_probs=20.0
Q ss_pred HHHHhCC--eEEEEecCCCchHHHHHHHH
Q 001722 333 QVIRENQ--VVVVVGETGSGKTTQLTQYL 359 (1020)
Q Consensus 333 ~~i~~~q--~vII~gpTGSGKTtqi~q~L 359 (1020)
..|.+|+ .+|+.||+|+||||.+-..+
T Consensus 155 s~ieq~~ipSmIlWGppG~GKTtlArlia 183 (554)
T KOG2028|consen 155 SLIEQNRIPSMILWGPPGTGKTTLARLIA 183 (554)
T ss_pred HHHHcCCCCceEEecCCCCchHHHHHHHH
Confidence 3445554 68999999999999875543
No 476
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=90.93 E-value=1.1 Score=56.10 Aligned_cols=117 Identities=17% Similarity=0.211 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhCCeEEEEecCCCchHHHHHHHHH-----------------------------------HhcccC----
Q 001722 326 SVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLL-----------------------------------EDGYTT---- 366 (1020)
Q Consensus 326 ~~q~eil~~i~~~q~vII~gpTGSGKTtqi~q~Ll-----------------------------------e~~~~~---- 366 (1020)
.+-..+|..+...++.++..|||+|||+.++--.+ +.....
T Consensus 28 a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~q~~k~~~~~~~~s~~~~~~~p~~~s~~~g~~s~e~~e~~~~~ 107 (945)
T KOG1132|consen 28 AFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQQHLKSRKPKGKISERKAGFIPTQPSDSGGEKSEEAGEPIACY 107 (945)
T ss_pred HHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhhccccccchhhhhccccCCCCccCCCCchhhhcCccccc
Q ss_pred --CCEEEEEcccHHHHHHHHHHHHHHhccccCCEEEEEEeeeecCCC---------------------------------
Q 001722 367 --NGIVGCTQPRRVAAMSVAKRVSEEMDTELGDKVGYAIRFEDVTGP--------------------------------- 411 (1020)
Q Consensus 367 --~~~Il~tqPrR~lA~qva~rva~e~~~~lG~~VGy~ir~e~~~s~--------------------------------- 411 (1020)
..+|.+-.-|-.-..|+.+.+ ...+-. -..+-.+-|-.-|+++
T Consensus 108 ~~ipkIyyaSRTHsQltQvvrEl-rrT~Y~-vkmtVLgSReq~Cinpev~k~~~~~~~~~~C~k~~~~~~C~f~~~~~~~ 185 (945)
T KOG1132|consen 108 TGIPKIYYASRTHSQLTQVVREL-RRTGYR-VKMTVLGSREQLCINPEVKKLEGNALQNHVCKKLVKSRSCHFYKIVEEK 185 (945)
T ss_pred cCCceEEEecchHHHHHHHHHHH-hhcCCC-CceEEeecchhhccCHHHhhhhcchhhhhHHHhhccccccccccccccc
Q ss_pred ------------------------------------CccEEEEchHHHHHHHhcCCC---CCCccEEEEeCCC
Q 001722 412 ------------------------------------STLIKYMTDGVLLRETLKDSD---LDKYRVIVMDEAH 445 (1020)
Q Consensus 412 ------------------------------------~t~I~~~T~g~LLr~ll~d~~---L~~~s~IIIDEaH 445 (1020)
...|+||-...|+.-.+.... |.+ ++||+||||
T Consensus 186 sl~~~l~~~i~DIEDLVk~Gk~~~~CPYfaSR~l~edAdIIF~PYnYLiDp~iR~~~~v~Lkn-sIVIfDEAH 257 (945)
T KOG1132|consen 186 SLQPRLHDEIFDIEDLVKIGKKSRGCPYFASRELKEDADIIFCPYNYLIDPKIRRSHKVDLKN-SIVIFDEAH 257 (945)
T ss_pred ccccccCCCcccHHHHHHhCccCcCCcchhhhhhcccCcEEEechhhhcCHhhhccccccccc-cEEEEeccc
No 477
>PRK05973 replicative DNA helicase; Provisional
Probab=90.90 E-value=0.21 Score=54.58 Aligned_cols=57 Identities=18% Similarity=0.186 Sum_probs=39.7
Q ss_pred HHHHHHHHhCCeEEEEecCCCchHHHHHHHHHHhcccCCCEEEEEcccHHHHHHHHHHH
Q 001722 329 DELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRV 387 (1020)
Q Consensus 329 ~eil~~i~~~q~vII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~lA~qva~rv 387 (1020)
+++.--+..+..++|.|++|+|||+...+++.+.... +.+++++.- -.-..++..++
T Consensus 55 ~~l~GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~-Ge~vlyfSl-Ees~~~i~~R~ 111 (237)
T PRK05973 55 EELFSQLKPGDLVLLGARPGHGKTLLGLELAVEAMKS-GRTGVFFTL-EYTEQDVRDRL 111 (237)
T ss_pred HHhcCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhc-CCeEEEEEE-eCCHHHHHHHH
Confidence 4466677889999999999999999999998876543 555655431 11234555554
No 478
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=90.89 E-value=0.82 Score=49.13 Aligned_cols=59 Identities=17% Similarity=0.219 Sum_probs=35.7
Q ss_pred EEEEchHHHHHHHhcCCCCCCccEEEEeCCCcCCCCcc---HHHHHHHHHHhhcCCceEEEEeccC
Q 001722 415 IKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTD---VLFGILKKVVARRRDFKLIVTSATL 477 (1020)
Q Consensus 415 I~~~T~g~LLr~ll~d~~L~~~s~IIIDEaHERs~~tD---~ll~lLk~il~~r~~lklIlmSATl 477 (1020)
+.-.+.|+..+..+....+.+.+++|+||-= .+++.. .+..+++.+ ..+..+|++|..+
T Consensus 148 ~~~LSgG~~qrv~laral~~~p~llllDEPt-~~LD~~~~~~l~~~l~~~---~~~~tii~~sh~~ 209 (226)
T cd03248 148 GSQLSGGQKQRVAIARALIRNPQVLILDEAT-SALDAESEQQVQQALYDW---PERRTVLVIAHRL 209 (226)
T ss_pred CCcCCHHHHHHHHHHHHHhcCCCEEEEeCCc-ccCCHHHHHHHHHHHHHH---cCCCEEEEEECCH
Confidence 4445667666655555557788999999965 345544 344445443 2245666666655
No 479
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.81 E-value=1.4 Score=53.31 Aligned_cols=78 Identities=23% Similarity=0.246 Sum_probs=46.5
Q ss_pred CCCCccEEEEchHHHHHHHhcCC-------CCCCcc-EEEEeCCCcCCCCc-----c------HHHHHHHHHHhhcCCce
Q 001722 409 TGPSTLIKYMTDGVLLRETLKDS-------DLDKYR-VIVMDEAHERSLST-----D------VLFGILKKVVARRRDFK 469 (1020)
Q Consensus 409 ~s~~t~I~~~T~g~LLr~ll~d~-------~L~~~s-~IIIDEaHERs~~t-----D------~ll~lLk~il~~r~~lk 469 (1020)
.+....|.|.|..-|..-+.... +|.+.. +++-||||+-...| | -+-..++-.+...++--
T Consensus 78 hnd~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~~tkkk~~de~~~~~~we~~v~la~~~nkd~~ 157 (812)
T COG3421 78 HNDAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNTETKKKLNDEASEKRNWESVVKLALEQNKDNL 157 (812)
T ss_pred cCCceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhhhhhhhcccHHHHHhhHHHHHHHHHhcCCCce
Confidence 34456789999887766554321 255555 45679999532222 1 12334444556677888
Q ss_pred EEEEeccCC--HHHHHHHh
Q 001722 470 LIVTSATLN--AQKFSDFF 486 (1020)
Q Consensus 470 lIlmSATld--~~~f~~~f 486 (1020)
++..|||.+ ......|-
T Consensus 158 ~lef~at~~k~k~v~~ky~ 176 (812)
T COG3421 158 LLEFSATIPKEKSVEDKYE 176 (812)
T ss_pred eehhhhcCCccccHHHHhc
Confidence 888999994 33444443
No 480
>PHA00149 DNA encapsidation protein
Probab=90.81 E-value=2.6 Score=46.98 Aligned_cols=144 Identities=19% Similarity=0.239 Sum_probs=85.8
Q ss_pred EEEEecCCCchHHHHHHHHHHhcccCCCEEEEEcccHHHHHHHHHHHHHHhccccCCEEEEEEeeeecCCCCccEEEEch
Q 001722 341 VVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELGDKVGYAIRFEDVTGPSTLIKYMTD 420 (1020)
Q Consensus 341 vII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~lA~qva~rva~e~~~~lG~~VGy~ir~e~~~s~~t~I~~~T~ 420 (1020)
-.|+|.-|-|||.++.-+++......+.+.+++--...-.....+-++.++-...... +.|.....--....|-|..+
T Consensus 20 ~fviG~RgiGKTya~k~~~~k~~i~kgeqfiYLRr~k~El~~k~~Ff~d~~~~~~~~~--F~Vkg~ki~~~~k~igy~i~ 97 (331)
T PHA00149 20 NFVIGARGIGKTYALKKYLIKRFIKKGEQFIYLRRYKSELKKKSKFFADIAQEFPNTE--FEVKGRKIYIKGKLIGYAIP 97 (331)
T ss_pred EEEEeccccchhhHHHHHHHHHHHhcCcEEEEEEecchhhhhhhhhhHHHHHhCCCCc--eEEEccEEEEcCeEEEEEEe
Confidence 3566999999999999999998888787877764433333223344444443222111 11111111111223333333
Q ss_pred HHHHHHHhcCCCCCCccEEEEeCCCc-CC------CCccHHHHHHHHHHhhcCCceEEEEeccC-CHHHHHHHhC
Q 001722 421 GVLLRETLKDSDLDKYRVIVMDEAHE-RS------LSTDVLFGILKKVVARRRDFKLIVTSATL-NAQKFSDFFG 487 (1020)
Q Consensus 421 g~LLr~ll~d~~L~~~s~IIIDEaHE-Rs------~~tD~ll~lLk~il~~r~~lklIlmSATl-d~~~f~~~f~ 487 (1020)
=.-+.. +..+...++++|++||+-- ++ -..+.|+.++..+.+.+.+++++++|--. ..+-+-.||+
T Consensus 98 LS~~q~-~Ks~~Yp~V~~I~fDEfi~dk~n~~YlpNE~~allnli~tV~R~Re~vr~~~lsNa~~~~NPyF~yfg 171 (331)
T PHA00149 98 LSTWQA-LKSSAYPNVSTIFFDEFIREKDNKRYLPNEVDALLNLIDTVFRARERVRCICLSNAVSIVNPYFLYFG 171 (331)
T ss_pred hhhHHh-hcccCCCceEEEEeeeeeecCcccccCCchHHHHHHHHHHHHHhhcCeEEEEEcCcccccchhhheec
Confidence 222222 2345688999999999873 21 12357888888888889999999999765 2344555554
No 481
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=90.79 E-value=0.63 Score=54.71 Aligned_cols=23 Identities=26% Similarity=0.312 Sum_probs=18.2
Q ss_pred CCeEEEEecCCCchHHHHHHHHH
Q 001722 338 NQVVVVVGETGSGKTTQLTQYLL 360 (1020)
Q Consensus 338 ~q~vII~gpTGSGKTtqi~q~Ll 360 (1020)
.+.+++.||+|||||+.+-....
T Consensus 165 p~gvLL~GppGtGKT~lAkaia~ 187 (389)
T PRK03992 165 PKGVLLYGPPGTGKTLLAKAVAH 187 (389)
T ss_pred CCceEEECCCCCChHHHHHHHHH
Confidence 45799999999999998755433
No 482
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=90.76 E-value=0.69 Score=57.03 Aligned_cols=59 Identities=19% Similarity=0.253 Sum_probs=35.7
Q ss_pred EchHHHHHHHhcCCCCCCccEEEEeCCCcCCCCccHHHHHHHHHHhhcCCceEEEEeccC
Q 001722 418 MTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTSATL 477 (1020)
Q Consensus 418 ~T~g~LLr~ll~d~~L~~~s~IIIDEaHERs~~tD~ll~lLk~il~~r~~lklIlmSATl 477 (1020)
.+.|.-.|..+....+.+..++|+||.= -.++.+-...+...+.....+..+|+.|.-+
T Consensus 481 LSGGqrQRi~LARall~~~~ililDEpt-saLD~~t~~~i~~~l~~~~~~~tvI~VtHr~ 539 (582)
T PRK11176 481 LSGGQRQRIAIARALLRDSPILILDEAT-SALDTESERAIQAALDELQKNRTSLVIAHRL 539 (582)
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEECcc-ccCCHHHHHHHHHHHHHHhCCCEEEEEecch
Confidence 4556655555555556777899999976 2444443334444444444566777777766
No 483
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=90.67 E-value=1 Score=52.97 Aligned_cols=41 Identities=10% Similarity=0.279 Sum_probs=25.9
Q ss_pred CccEEEEeCCCcCCCC---ccHHHHHHHHHHhhcCCceEEEEeccC
Q 001722 435 KYRVIVMDEAHERSLS---TDVLFGILKKVVARRRDFKLIVTSATL 477 (1020)
Q Consensus 435 ~~s~IIIDEaHERs~~---tD~ll~lLk~il~~r~~lklIlmSATl 477 (1020)
++++++||.++-..-. ...++.++..+..... +||++|-..
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~k--qIvltsdr~ 218 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGK--QIVLTSDRP 218 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCC--EEEEEcCCC
Confidence 7899999999953333 3456666666654432 666666443
No 484
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=90.63 E-value=0.22 Score=53.07 Aligned_cols=60 Identities=17% Similarity=0.346 Sum_probs=36.0
Q ss_pred EEEchHHHHHHHhcCCCCCCccEEEEeCCCcCCCCccH---HHHHHHHHHhhcCCceEEEEeccC
Q 001722 416 KYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDV---LFGILKKVVARRRDFKLIVTSATL 477 (1020)
Q Consensus 416 ~~~T~g~LLr~ll~d~~L~~~s~IIIDEaHERs~~tD~---ll~lLk~il~~r~~lklIlmSATl 477 (1020)
.-.+.|+..+..+....+.+.+++|+||.. .+++... +..+++.+... ....+|+.|..+
T Consensus 127 ~~LS~G~~qrl~laral~~~p~llllDEPt-~~LD~~~~~~~~~~l~~~~~~-~~~tii~vsh~~ 189 (213)
T TIGR01277 127 EQLSGGQRQRVALARCLVRPNPILLLDEPF-SALDPLLREEMLALVKQLCSE-RQRTLLMVTHHL 189 (213)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEcCCC-ccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCH
Confidence 345666665555544456778999999987 4565553 44444444322 245666666554
No 485
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=90.63 E-value=0.26 Score=52.69 Aligned_cols=58 Identities=17% Similarity=0.260 Sum_probs=34.3
Q ss_pred EEchHHHHHHHhcCCCCCCccEEEEeCCCcCCCCcc---HHHHHHHHHHhhcCCceEEEEeccCC
Q 001722 417 YMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTD---VLFGILKKVVARRRDFKLIVTSATLN 478 (1020)
Q Consensus 417 ~~T~g~LLr~ll~d~~L~~~s~IIIDEaHERs~~tD---~ll~lLk~il~~r~~lklIlmSATld 478 (1020)
-.+.|+..+..+....+.+.+++|+||-- .+++.. .+..+|+.+. ....+|+.|.-++
T Consensus 140 ~LSgG~~qrl~la~al~~~p~llllDEPt-~~LD~~~~~~l~~~l~~~~---~~~tii~~sH~~~ 200 (220)
T cd03245 140 GLSGGQRQAVALARALLNDPPILLLDEPT-SAMDMNSEERLKERLRQLL---GDKTLIIITHRPS 200 (220)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCcc-ccCCHHHHHHHHHHHHHhc---CCCEEEEEeCCHH
Confidence 45566665555444456678999999975 455544 4444454432 2345666666554
No 486
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.59 E-value=0.8 Score=49.45 Aligned_cols=57 Identities=19% Similarity=0.331 Sum_probs=33.0
Q ss_pred EEchHHHHHHHhcCCCCCCccEEEEeCCCcCCCCcc---HHHHHHHHHHhhcCCceEEEEeccC
Q 001722 417 YMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTD---VLFGILKKVVARRRDFKLIVTSATL 477 (1020)
Q Consensus 417 ~~T~g~LLr~ll~d~~L~~~s~IIIDEaHERs~~tD---~ll~lLk~il~~r~~lklIlmSATl 477 (1020)
-.+.|...+..+....+.+.+++|+||.= .+++.+ .+..+|+.+ .....+|+.|..+
T Consensus 138 ~LS~G~~qrv~la~al~~~p~lllLDEP~-~~LD~~~~~~l~~~l~~~---~~~~tii~~sh~~ 197 (234)
T cd03251 138 KLSGGQRQRIAIARALLKDPPILILDEAT-SALDTESERLVQAALERL---MKNRTTFVIAHRL 197 (234)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCcc-ccCCHHHHHHHHHHHHHh---cCCCEEEEEecCH
Confidence 45556555544444446677899999975 455544 344444443 2345566666554
No 487
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=90.56 E-value=1 Score=48.52 Aligned_cols=59 Identities=19% Similarity=0.216 Sum_probs=34.4
Q ss_pred EEchHHHHHHHhcCCCCCCccEEEEeCCCcCCCCcc---HHHHHHHHHHhhcCCceEEEEeccC
Q 001722 417 YMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTD---VLFGILKKVVARRRDFKLIVTSATL 477 (1020)
Q Consensus 417 ~~T~g~LLr~ll~d~~L~~~s~IIIDEaHERs~~tD---~ll~lLk~il~~r~~lklIlmSATl 477 (1020)
-.+.|...+..+....+.+.+++|+||-- .+++.+ .+..+|+++... ....+|+.|.-+
T Consensus 146 ~LS~Ge~qrl~la~al~~~p~llllDEPt-~~LD~~~~~~l~~~l~~~~~~-~~~tii~~sH~~ 207 (228)
T PRK10584 146 QLSGGEQQRVALARAFNGRPDVLFADEPT-GNLDRQTGDKIADLLFSLNRE-HGTTLILVTHDL 207 (228)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCC-CCCCHHHHHHHHHHHHHHHHh-cCCEEEEEecCH
Confidence 34556555544444456678999999976 455544 445555554332 244566666554
No 488
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=90.55 E-value=0.5 Score=49.99 Aligned_cols=129 Identities=16% Similarity=0.183 Sum_probs=64.3
Q ss_pred HHhCCeEEEEecCCCchHHHHHHHHHHh-cccCCCEEEEE-cccHHHHHHHHHHHHHHhccccCCEEEEEEeeeecCCCC
Q 001722 335 IRENQVVVVVGETGSGKTTQLTQYLLED-GYTTNGIVGCT-QPRRVAAMSVAKRVSEEMDTELGDKVGYAIRFEDVTGPS 412 (1020)
Q Consensus 335 i~~~q~vII~gpTGSGKTtqi~q~Lle~-~~~~~~~Il~t-qPrR~lA~qva~rva~e~~~~lG~~VGy~ir~e~~~s~~ 412 (1020)
+..++.+.|+|+.||||||.+-...-.. .....|.|.+- ++..... ...+. ...++|... +....+.
T Consensus 23 i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~--~~~~~--------~~~i~~v~q-~~~~~~~ 91 (200)
T cd03217 23 IKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLP--PEERA--------RLGIFLAFQ-YPPEIPG 91 (200)
T ss_pred ECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCC--HHHHh--------hCcEEEeec-ChhhccC
Confidence 4578999999999999999775432221 11234555431 1211100 00010 012343211 1000000
Q ss_pred -------ccE-EEEchHHHHHHHhcCCCCCCccEEEEeCCCcCCCCcc---HHHHHHHHHHhhcCCceEEEEeccC
Q 001722 413 -------TLI-KYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTD---VLFGILKKVVARRRDFKLIVTSATL 477 (1020)
Q Consensus 413 -------t~I-~~~T~g~LLr~ll~d~~L~~~s~IIIDEaHERs~~tD---~ll~lLk~il~~r~~lklIlmSATl 477 (1020)
... .-.+.|+..+..+....+.+..++|+||.= .+++.. .+..+|+++.. ...-+|+.|.-+
T Consensus 92 ~~~~~~l~~~~~~LS~G~~qrv~laral~~~p~illlDEPt-~~LD~~~~~~l~~~L~~~~~--~~~tiii~sh~~ 164 (200)
T cd03217 92 VKNADFLRYVNEGFSGGEKKRNEILQLLLLEPDLAILDEPD-SGLDIDALRLVAEVINKLRE--EGKSVLIITHYQ 164 (200)
T ss_pred ccHHHHHhhccccCCHHHHHHHHHHHHHhcCCCEEEEeCCC-ccCCHHHHHHHHHHHHHHHH--CCCEEEEEecCH
Confidence 111 246667766665555567788999999976 345443 44555555432 234555555443
No 489
>PHA03311 helicase-primase subunit BBLF4; Provisional
Probab=90.54 E-value=1.2 Score=55.37 Aligned_cols=45 Identities=33% Similarity=0.405 Sum_probs=36.2
Q ss_pred CCeEEEEecCCCchHHHHHHHHHHhcccCCCEEEEEcccHHHHHHHHHHHH
Q 001722 338 NQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVS 388 (1020)
Q Consensus 338 ~q~vII~gpTGSGKTtqi~q~Lle~~~~~~~~Il~tqPrR~lA~qva~rva 388 (1020)
-.+++|.|--|+||||.+ +.+.+.. .++++-||+++|..+...++
T Consensus 71 Fs~~~itG~AGsGKst~i-~~l~~~l-----~cvitg~T~vAAqN~~~~L~ 115 (828)
T PHA03311 71 FSVYLITGTAGAGKSTSI-QTLNENL-----DCVITGATRVAAQNLSAKLS 115 (828)
T ss_pred eEEEEEecCCCCChHHHH-HHHHHhc-----CEEEEcchHHHHHhhhcccc
Confidence 368899999999999998 4455543 57899999999999987444
No 490
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=90.53 E-value=0.43 Score=53.05 Aligned_cols=20 Identities=35% Similarity=0.431 Sum_probs=16.9
Q ss_pred CeEEEEecCCCchHHHHHHH
Q 001722 339 QVVVVVGETGSGKTTQLTQY 358 (1020)
Q Consensus 339 q~vII~gpTGSGKTtqi~q~ 358 (1020)
..+++.||+|-||||.+-..
T Consensus 53 DHvLl~GPPGlGKTTLA~II 72 (332)
T COG2255 53 DHVLLFGPPGLGKTTLAHII 72 (332)
T ss_pred CeEEeeCCCCCcHHHHHHHH
Confidence 47899999999999987553
No 491
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=90.53 E-value=0.63 Score=52.84 Aligned_cols=62 Identities=21% Similarity=0.372 Sum_probs=38.1
Q ss_pred ccEEEEchHHHHHHHhcCCCCCCccEEEEeCCCcCCCCcc---HHHHHHHHHHhhcCCceEEEEeccC
Q 001722 413 TLIKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTD---VLFGILKKVVARRRDFKLIVTSATL 477 (1020)
Q Consensus 413 t~I~~~T~g~LLr~ll~d~~L~~~s~IIIDEaHERs~~tD---~ll~lLk~il~~r~~lklIlmSATl 477 (1020)
+.+.-.+.|+..+..+....+.+..++|+||-- .+++.. .+..+++.+.. ....+|+.|.-+
T Consensus 134 ~~~~~LS~G~~qrl~la~aL~~~P~lllLDEPt-~gLD~~~~~~l~~~l~~l~~--~g~till~sH~l 198 (306)
T PRK13537 134 AKVGELSGGMKRRLTLARALVNDPDVLVLDEPT-TGLDPQARHLMWERLRSLLA--RGKTILLTTHFM 198 (306)
T ss_pred CchhhCCHHHHHHHHHHHHHhCCCCEEEEeCCC-cCCCHHHHHHHHHHHHHHHh--CCCEEEEECCCH
Confidence 344556677766665555567788999999976 345443 34445555422 255677766665
No 492
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.52 E-value=0.35 Score=52.03 Aligned_cols=58 Identities=17% Similarity=0.318 Sum_probs=35.6
Q ss_pred EEEchHHHHHHHhcCCCCCCccEEEEeCCCcCCCCcc---HHHHHHHHHHhhcCCceEEEEeccC
Q 001722 416 KYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTD---VLFGILKKVVARRRDFKLIVTSATL 477 (1020)
Q Consensus 416 ~~~T~g~LLr~ll~d~~L~~~s~IIIDEaHERs~~tD---~ll~lLk~il~~r~~lklIlmSATl 477 (1020)
.-++.|+..+..+....+.+.+++|+||.= .+++.. .+..+++.+. ....+|+.|..+
T Consensus 138 ~~LS~G~~~rv~la~al~~~p~llllDEP~-~~LD~~~~~~l~~~l~~~~---~~~tii~~sh~~ 198 (229)
T cd03254 138 GNLSQGERQLLAIARAMLRDPKILILDEAT-SNIDTETEKLIQEALEKLM---KGRTSIIIAHRL 198 (229)
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEeCcc-ccCCHHHHHHHHHHHHHhc---CCCEEEEEecCH
Confidence 345666666655555557788999999976 455544 4445555442 245666666654
No 493
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=90.47 E-value=0.22 Score=47.66 Aligned_cols=18 Identities=39% Similarity=0.732 Sum_probs=15.7
Q ss_pred eEEEEecCCCchHHHHHH
Q 001722 340 VVVVVGETGSGKTTQLTQ 357 (1020)
Q Consensus 340 ~vII~gpTGSGKTtqi~q 357 (1020)
+++|+|++||||||.+-.
T Consensus 1 vI~I~G~~gsGKST~a~~ 18 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKE 18 (121)
T ss_dssp EEEEEESTTSSHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHH
Confidence 578999999999998754
No 494
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=90.46 E-value=0.68 Score=49.64 Aligned_cols=60 Identities=10% Similarity=0.293 Sum_probs=37.5
Q ss_pred EEchHHHHHHHhcCCCCCCccEEEEeCCCcCCCCccH---HHHHHHHHHhhcCCceEEEEeccCC
Q 001722 417 YMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDV---LFGILKKVVARRRDFKLIVTSATLN 478 (1020)
Q Consensus 417 ~~T~g~LLr~ll~d~~L~~~s~IIIDEaHERs~~tD~---ll~lLk~il~~r~~lklIlmSATld 478 (1020)
-++.|+..+..+....+.+.+++|+||.- .+++... +..+|+.+... ....+|+.|.-++
T Consensus 141 ~lS~G~~qrv~laral~~~p~illlDEP~-~~LD~~~~~~l~~~l~~~~~~-~~~tii~~sh~~~ 203 (220)
T TIGR02982 141 NLSGGQKQRVAIARALVHRPKLVLADEPT-AALDSKSGRDVVELMQKLARE-QGCTILIVTHDNR 203 (220)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCC-CcCCHHHHHHHHHHHHHHHHH-cCCEEEEEeCCHH
Confidence 45566655555554556788999999987 5665544 45555554321 2567777777654
No 495
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=90.44 E-value=0.73 Score=49.31 Aligned_cols=24 Identities=42% Similarity=0.628 Sum_probs=20.1
Q ss_pred HHhCCeEEEEecCCCchHHHHHHH
Q 001722 335 IRENQVVVVVGETGSGKTTQLTQY 358 (1020)
Q Consensus 335 i~~~q~vII~gpTGSGKTtqi~q~ 358 (1020)
+..++.+.|+|+.||||||.+-..
T Consensus 27 i~~Ge~~~i~G~nGsGKSTLl~~l 50 (221)
T cd03244 27 IKPGEKVGIVGRTGSGKSSLLLAL 50 (221)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHH
Confidence 357899999999999999977543
No 496
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=90.43 E-value=0.67 Score=57.35 Aligned_cols=59 Identities=19% Similarity=0.276 Sum_probs=34.7
Q ss_pred EchHHHHHHHhcCCCCCCccEEEEeCCCcCCCCccHHHHHHHHHHhhcCCceEEEEeccC
Q 001722 418 MTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTSATL 477 (1020)
Q Consensus 418 ~T~g~LLr~ll~d~~L~~~s~IIIDEaHERs~~tD~ll~lLk~il~~r~~lklIlmSATl 477 (1020)
.+.|...|..+....+.+..++|+||+= -+++.+.-..+...+....++.-+|+.|.-+
T Consensus 472 LSgGq~qrl~lARall~~p~ililDEpt-s~LD~~~~~~i~~~l~~~~~~~tvI~isH~~ 530 (585)
T TIGR01192 472 LSGGERQRLAIARAILKNAPILVLDEAT-SALDVETEARVKNAIDALRKNRTTFIIAHRL 530 (585)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECCc-cCCCHHHHHHHHHHHHHHhCCCEEEEEEcCh
Confidence 4556655555555557788899999987 4555544333333333333455666666654
No 497
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=90.41 E-value=0.48 Score=60.22 Aligned_cols=67 Identities=18% Similarity=0.147 Sum_probs=49.1
Q ss_pred cHHHHHHHHHHHHhCCeEEEEecCCCchHHHHHHHHHHhcc---cCCCEEEEEcccHHHHHHHHHHHHHHhc
Q 001722 324 IFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGY---TTNGIVGCTQPRRVAAMSVAKRVSEEMD 392 (1020)
Q Consensus 324 i~~~q~eil~~i~~~q~vII~gpTGSGKTtqi~q~Lle~~~---~~~~~Il~tqPrR~lA~qva~rva~e~~ 392 (1020)
+.+.|.+++... ...++|.|..|||||+.+..-+..... -...+|+++.-|+-+|..+..|+.+.++
T Consensus 5 Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~~l~~ria~Li~~~~i~P~~IL~lTFT~kAA~em~~Rl~~~~~ 74 (726)
T TIGR01073 5 LNPEQREAVKTT--EGPLLIMAGAGSGKTRVLTHRIAHLIAEKNVAPWNILAITFTNKAAREMKERVEKLLG 74 (726)
T ss_pred cCHHHHHHHhCC--CCCEEEEeCCCCCHHHHHHHHHHHHHHcCCCCHHHeeeeeccHHHHHHHHHHHHHHhc
Confidence 456677777653 567899999999999987654433221 1235799999999999999999976544
No 498
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=90.41 E-value=0.49 Score=53.95 Aligned_cols=29 Identities=31% Similarity=0.359 Sum_probs=24.9
Q ss_pred HHhCCeEEEEecCCCchHHHHHHHHHHhc
Q 001722 335 IRENQVVVVVGETGSGKTTQLTQYLLEDG 363 (1020)
Q Consensus 335 i~~~q~vII~gpTGSGKTtqi~q~Lle~~ 363 (1020)
+..+.++.|+|++|||||+.+.++++...
T Consensus 99 i~~g~vtei~G~~GsGKT~l~~~~~~~~~ 127 (317)
T PRK04301 99 IETQSITEFYGEFGSGKTQICHQLAVNVQ 127 (317)
T ss_pred ccCCcEEEEECCCCCCHhHHHHHHHHHhc
Confidence 44578999999999999999999987753
No 499
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=90.41 E-value=0.41 Score=51.92 Aligned_cols=58 Identities=19% Similarity=0.296 Sum_probs=34.5
Q ss_pred EEEchHHHHHHHhcCCCCCCccEEEEeCCCcCCCCccH---HHHHHHHHHhhcCCceEEEEeccC
Q 001722 416 KYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDV---LFGILKKVVARRRDFKLIVTSATL 477 (1020)
Q Consensus 416 ~~~T~g~LLr~ll~d~~L~~~s~IIIDEaHERs~~tD~---ll~lLk~il~~r~~lklIlmSATl 477 (1020)
.-.+.|+..+..+....+.+.+++|+||.- .+++... +..+|+.+ .....+|+.|.-+
T Consensus 138 ~~LS~G~~qrv~la~al~~~p~llllDEP~-~gLD~~~~~~l~~~l~~~---~~g~~vi~~sh~~ 198 (238)
T cd03249 138 SQLSGGQKQRIAIARALLRNPKILLLDEAT-SALDAESEKLVQEALDRA---MKGRTTIVIAHRL 198 (238)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCcc-ccCCHHHHHHHHHHHHHh---cCCCEEEEEeCCH
Confidence 345666666555554556778999999986 4555543 44444443 2345566655544
No 500
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.32 E-value=0.82 Score=50.78 Aligned_cols=60 Identities=18% Similarity=0.199 Sum_probs=35.5
Q ss_pred EEEchHHHHHHHhcCCCCCCccEEEEeCCCcCCCCcc---HHHHHHHHHHhhcCCceEEEEeccC
Q 001722 416 KYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTD---VLFGILKKVVARRRDFKLIVTSATL 477 (1020)
Q Consensus 416 ~~~T~g~LLr~ll~d~~L~~~s~IIIDEaHERs~~tD---~ll~lLk~il~~r~~lklIlmSATl 477 (1020)
.-++.|+..+..+....+.+..++|+||-- .+++.. .+..+++.+... ....+|+.|.-+
T Consensus 159 ~~LS~Gq~qrv~lAral~~~p~illLDEPt-~~LD~~~~~~l~~~l~~~~~~-~g~tiii~tH~~ 221 (269)
T cd03294 159 DELSGGMQQRVGLARALAVDPDILLMDEAF-SALDPLIRREMQDELLRLQAE-LQKTIVFITHDL 221 (269)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEcCCC-ccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCH
Confidence 345666655555444456778999999976 455554 344445544322 245666666654
Done!