Query 001722
Match_columns 1020
No_of_seqs 595 out of 3691
Neff 6.5
Searched_HMMs 29240
Date Tue Mar 26 21:34:15 2013
Command hhsearch -i /local_scratch/syshi/lefta3m2/001722.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H2_45-48//hhsearch_pdb/001722hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xau_A PRE-mRNA-splicing facto 1.0 1 1 985.9 64.5 635 311-950 82-732 (773)
2 2va8_A SSO2462, SKI2-type heli 1.0 1 1 515.8 33.1 523 314-849 21-627 (715)
3 2p6r_A Afuhel308 helicase; pro 1.0 1 1 495.4 35.7 505 321-845 23-602 (702)
4 2zj8_A DNA helicase, putative 1.0 1 1 483.0 30.4 513 312-845 12-612 (720)
5 3i4u_A ATP-dependent RNA helic 1.0 1 1 460.3 24.4 248 701-950 5-253 (270)
6 4f92_B U5 small nuclear ribonu 1.0 1 1 361.9 27.9 454 324-787 927-1466(1724)
7 3l9o_A ATP-dependent RNA helic 1.0 1 1 356.6 25.2 331 319-667 180-597 (1108)
8 4a4z_A Antiviral helicase SKI2 1.0 1 1 352.3 20.2 386 320-723 36-557 (997)
9 4f92_B U5 small nuclear ribonu 1.0 1 1 347.7 39.3 455 324-788 80-636 (1724)
10 3o8b_A HCV NS3 protease/helica 1.0 1 1 340.2 14.5 306 313-669 207-516 (666)
No 1
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=1.00 E-value=1 Score=985.92 Aligned_cols=635 Identities=46% Similarity=0.826 Sum_probs=595.2
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHHCCCC--CCEEEEECCCHHHHHHHHHHHH
Q ss_conf 12999999707996799999999999099299990289964789999999712259--9899998351899999999999
Q 001722 311 KSKTLAEQRQYLPIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTT--NGIVGCTQPRRVAAMSVAKRVS 388 (1020)
Q Consensus 311 ~~~~l~~~R~~LPi~~~q~eil~~i~~~q~vII~gpTGSGKTtqipq~Lle~~~~~--~~~Ii~tqPrRvlA~sva~rva 388 (1020)
...+++++|..+|++..+.+++..+..+++++|+|||||||||++|+++++..+.. +..|+|++|+|++|.+++.+++
T Consensus 82 ~~~~~l~~r~~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTtllp~ll~~~~~~~~~g~~ilvl~P~r~La~q~~~~l~ 161 (773)
T 2xau_A 82 KYVDILKIRRELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACTQPRRVAAMSVAQRVA 161 (773)
T ss_dssp HHHHHHHHHTTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHCGGGGTCEEEEEESCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHHHH
T ss_conf 99999998661895999999999996798399988998899999999999740015899658861856999999999999
Q ss_pred HHHCCCCCCEEEEEEEEEECCCCCCCEEEECHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 98402028977789832103799810999722888998802999998317998188867878008999999999614994
Q 001722 389 EEMDTELGDKVGYAIRFEDVTGPSTLIKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDF 468 (1020)
Q Consensus 389 ~e~~~~lG~~VGy~ir~e~~~s~~t~I~~~T~g~LLr~l~~d~~L~~~s~IIIDEaHERs~~tD~Ll~lLk~il~~r~~l 468 (1020)
.+++..++..+||.++++......+.|+++|+|+|++.++.+..+.++++|||||+|+|++++|.++++++.+...+++.
T Consensus 162 ~~~~~~v~~~vG~~i~~~~~~~~~~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~ 241 (773)
T 2xau_A 162 EEMDVKLGEEVGYSIRFENKTSNKTILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDL 241 (773)
T ss_dssp HHTTCCBTTTEEEEETTEEECCTTCSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHCCCHHHEECCEECCCCCCCCCCCEEEECHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 98488453256622244545588987799899999999742844357788995470103645589999999998748786
Q ss_pred EEEEEECCCCHHHHHHHHCCCCEEEECCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHH
Q ss_conf 49998135797879977389895852685233015544799046999999999998512999988999089889999999
Q 001722 469 KLIVTSATLNAQKFSDFFGSVPIFHIPGRTFPVNTLYSKTPCEDYVEAAVKQAMTIHITSPPGDILIFMTGQDEIEAACF 548 (1020)
Q Consensus 469 kiIlmSATld~~~f~~~f~~~pii~i~gr~~pV~i~y~~~~~~dyl~~ai~~vl~i~~~~~~G~ILVFl~g~~eie~~~~ 548 (1020)
++|+||||++.+.+++||++++++.++|+.+|++++|...+..+++...+..++.++...+.|++||||+++.+|+.++.
T Consensus 242 ~iIl~SAT~~~~~l~~~~~~~~vi~v~gr~~pv~~~~~~~~~~~~~~~~l~~l~~~~~~~~~g~iLVF~~~~~~i~~l~~ 321 (773)
T 2xau_A 242 KIIIMSATLDAEKFQRYFNDAPLLAVPGRTYPVELYYTPEFQRDYLDSAIRTVLQIHATEEAGDILLFLTGEDEIEDAVR 321 (773)
T ss_dssp EEEEEESCSCCHHHHHHTTSCCEEECCCCCCCEEEECCSSCCSCHHHHHHHHHHHHHHHSCSCEEEEECSCHHHHHHHHH
T ss_pred EEEEEECCCCHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHH
T ss_conf 29999433568999998468985453686555388980688245999999999999972689998998998999999999
Q ss_pred HHHHHHHHHHCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHC-----CCCEEEEEECCHHHCCCCCCCEEEEEECCCCCC
Q ss_conf 999999985202468999818998449999999999998831-----899079995430000478898659997598652
Q 001722 549 ALKERMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAK-----EGTRKCIVATNIAETSLTVDGIFYVIDTGYGKM 623 (1020)
Q Consensus 549 ~L~~~l~~l~~~~~~~~~~l~Il~lhs~L~~~~q~~I~~~f~-----~g~rkVIVATniaEtGItIp~V~~VID~G~~k~ 623 (1020)
.|.+.+..+... ....++.+.++||+|+.++|.++++.|+ .|.++||||||++|+|||||+|++|||+|++|.
T Consensus 322 ~L~~~~~~l~~~--~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~iae~GidIp~v~~VId~g~~k~ 399 (773)
T 2xau_A 322 KISLEGDQLVRE--EGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTNIAETSLTIDGIVYVVDPGFSKQ 399 (773)
T ss_dssp HHHHHHHHHHHH--HCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECTHHHHTCCCTTEEEEEECSEEEE
T ss_pred HHHHHHHHHCCC--CCCCCEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCEEEEEECCHHHHCCCCCCEEEEEECCCCCC
T ss_conf 999988763134--567975999807899999999998526434578883499996767984767687379994797221
Q ss_pred EECCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEEECCCHHHHHHCCCCCCCCHHCCCCHHHHHHHHHHCCCCCCCC
Q ss_conf 00168789643320115998799983203999997899903946673106999951000254368999975226586667
Q 001722 624 KVYNPKMGMDALQVFPVSRAAADQRAGRAGRTGPGTCYRLYTESAYLNEMLPSPVPEIQRTNLGNVVLLLKSLKIDNLLD 703 (1020)
Q Consensus 624 ~~yd~~~g~~~L~~~piS~asa~QRaGRAGR~g~G~cyrLyt~~~~~~~l~~~~~PEI~r~~L~~~vL~lk~lgi~~l~~ 703 (1020)
++||+..|++.|.+.|+|+++|.||+|||||.++|.||+||++.++...|.+++.|||++++|.+++|+++++|+.++..
T Consensus 400 ~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~~~G~~~~l~~~~~~~~~l~~~~~pEi~r~~L~~~~L~l~~~gi~~~~~ 479 (773)
T 2xau_A 400 KVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEEAFQKELIEQSYPEILRSNLSSTVLELKKLGIDDLVH 479 (773)
T ss_dssp EEEETTTTEEEEEEEECCHHHHHHHHHGGGSSSSEEEEESSCHHHHHHTSCSSCCCGGGGSCCHHHHHHHHHTTCCCGGG
T ss_pred EEECCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCEEEEEECHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCHHH
T ss_conf 22256668320330017999998653444789998799996378840123016897533475899999999849997232
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 77899997434999999998806755789766988886129999488998754310285799999999707998556871
Q 001722 704 FDFMDPPPQENILNSMYQLWVLGALNNVGALTDLGWKMVEFPLDPPLAKMLLMGEQLGCLDEVLTIVSMLSVPSVFFRPK 783 (1020)
Q Consensus 704 f~~~dpP~~~~i~~al~~L~~lgaLd~~g~LT~lG~~ma~lPldp~lak~li~~~~~~c~~e~l~Iva~Ls~~~~f~~p~ 783 (1020)
|+|++||+.+.+..|++.|..+||||.+|.||++|+.|+.||++|++||||+.+..++|++++++|+|||+++++|++|.
T Consensus 480 f~~~~~p~~~~i~~a~~~L~~lgald~~~~lT~lG~~~a~~pl~p~~~~~l~~~~~~~c~~~~l~i~a~ls~~~~f~~~~ 559 (773)
T 2xau_A 480 FDFMDPPAPETMMRALEELNYLACLDDEGNLTPLGRLASQFPLDPMLAVMLIGSFEFQCSQEILTIVAMLSVPNVFIRPT 559 (773)
T ss_dssp CCCSSCCCHHHHHHHHHHHHHTTSBCTTSCBCHHHHHHTTSSSCHHHHHHHHHGGGGTCHHHHHHHHHHHTSCCCBCCCT
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCH
T ss_conf 43557985999999999999768765578868305642433688899999986212474168999999603688551874
Q ss_pred CHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH---HH-HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCC-
Q ss_conf 0499999998530147872778999999999511---10-113676104738899999999999999986399988999-
Q 001722 784 DRAEESDAAREKFFVQESDHLTLLYVYQQWKEHQ---YR-GDWCEEHYLHVKSLRKAREVRSQLLDILKTLKIPLTSSG- 858 (1020)
Q Consensus 784 ~~~~~~~~~r~~f~~~~sDhltll~vy~~w~~~~---~~-~~wC~~~~l~~~~l~~a~~ir~qL~~~l~~~~~~~~s~~- 858 (1020)
+++++++.++.+|..+.|||+++||+|++|..+. .. ..||.+|||++++|+++.++|.||..+|...+++..++.
T Consensus 560 ~~~~~~~~~~~~f~~~~~D~~~~l~~~~~~~~~~~~~~~~~~~c~~~~l~~~~l~~~~~~~~ql~~~~~~~~~~~~~~~~ 639 (773)
T 2xau_A 560 KDKKRADDAKNIFAHPDGDHITLLNVYHAFKSDEAYEYGIHKWCRDHYLNYRSLSAADNIRSQLERLMNRYNLELNTTDY 639 (773)
T ss_dssp TCHHHHHHHHHTTCCTTBHHHHHHHHHHHHTSHHHHHHCHHHHHHHTTBCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCT
T ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 78999999998506889859999999999987022210689999983889999999999999999998742887577777
Q ss_pred ---CCHHHHHHHHHHHCCCHHHHHCCCCE-EEEECCCCCEEECCCCCCCCCCCCCCCEEEEEEECCHHHHHHHCCCCCHH
Q ss_conf ---98689999998311301334028710-47723994012089994337899987106543331314544432445988
Q 001722 859 ---HDFDVVRKAICSAYFHNAARLKGVGE-YINCRNGMPCHLHPSSAIYGLGYTPEYVVYHELILTTKEYMQCATAVEPQ 934 (1020)
Q Consensus 859 ---~~~~~i~~~l~~g~~~nvA~~~~~g~-y~~~~~~~~v~lHPsS~L~~~~~~p~~vvy~elv~t~k~y~r~vt~I~~~ 934 (1020)
.+++.|++|||+|||+|+|++.+.|. |.++.++..|+|||+|+|.. .|+||||+|++.|++.|||+||+|+|+
T Consensus 640 ~~~~~~~~i~~~l~~g~~~~~a~~~~~~~~y~~~~~~~~~~ihp~s~l~~---~~~~~v~~e~~~t~~~~~~~~~~i~~~ 716 (773)
T 2xau_A 640 ESPKYFDNIRKALASGFFMQVAKKRSGAKGYITVKDNQDVLIHPSTVLGH---DAEWVIYNEFVLTSKNYIRTVTSVRPE 716 (773)
T ss_dssp TSTTHHHHHHHHHHHHHTTSEEEECCC--CEEETTTCCEEEECTTCCCCT---TCSEEEEEEEEESSSEEEEEEEECCHH
T ss_pred CCHHHHHHHHHHHHHHCHHHHEEECCCCCCCEEEECCCEEEECCCCCCCC---CCCEEEEEEEECCCHHHEEECCCCCHH
T ss_conf 73206999999999867375514346787415733797799889864679---989899998620244242441607999
Q ss_pred HHHHHCCCCEEECCCC
Q ss_conf 8973179651003786
Q 001722 935 WLSELGPMFFSVKDSD 950 (1020)
Q Consensus 935 wL~e~~p~~~~~~~~~ 950 (1020)
||.+++|+||...+..
T Consensus 717 ~l~~~~~~~~~~~~~~ 732 (773)
T 2xau_A 717 WLIEIAPAYYDLSNFQ 732 (773)
T ss_dssp HHHHHCTTTSCGGGCC
T ss_pred HHHHHHHHHEEECCCC
T ss_conf 9999878762204178
No 2
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=1.00 E-value=1 Score=515.76 Aligned_cols=523 Identities=16% Similarity=0.162 Sum_probs=384.7
Q ss_pred HHHHHHCCCCCHHHHHHHHHH-HHHCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHH--H
Q ss_conf 999997079967999999999-9909929999028996478999999971225998999983518999999999999--8
Q 001722 314 TLAEQRQYLPIFSVRDELLQV-IRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSE--E 390 (1020)
Q Consensus 314 ~l~~~R~~LPi~~~q~eil~~-i~~~q~vII~gpTGSGKTtqipq~Lle~~~~~~~~Ii~tqPrRvlA~sva~rva~--e 390 (1020)
+.+..+..-..+++|.+++.. +.++++++|+||||||||+++++++++.....+++++|++|+|++|.+++.++.. .
T Consensus 21 ~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~il~i~P~r~La~q~~~~~~~~~~ 100 (715)
T 2va8_A 21 EIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKNGGKAIYVTPLRALTNEKYLTFKDWEL 100 (715)
T ss_dssp HHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCSEEEEECSCHHHHHHHHHHHGGGGG
T ss_pred HHHHHCCCCCCCHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHC
T ss_conf 99986799879999999999986489948998489875999999999999997798499990859999999999987652
Q ss_pred HCCCCCCEEEEEEEEEECCCCCCCEEEECHHHHHHHHHCCCC-CCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCE
Q ss_conf 402028977789832103799810999722888998802999-9983179981888678780089999999996149944
Q 001722 391 MDTELGDKVGYAIRFEDVTGPSTLIKYMTDGVLLRETLKDSD-LDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFK 469 (1020)
Q Consensus 391 ~~~~lG~~VGy~ir~e~~~s~~t~I~~~T~g~LLr~l~~d~~-L~~~s~IIIDEaHERs~~tD~Ll~lLk~il~~r~~lk 469 (1020)
++..++..+|+..+.+... ..+.|+|+|+|.|++.+..++. +.++++|||||+|+.. + +.....+..++.+.++++
T Consensus 101 ~g~~v~~~~G~~~~~~~~~-~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~-~-~~~~~~l~~i~~~~~~~~ 177 (715)
T 2va8_A 101 IGFKVAMTSGDYDTDDAWL-KNYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDELHYLN-D-PERGPVVESVTIRAKRRN 177 (715)
T ss_dssp GTCCEEECCSCSSSCCGGG-GGCSEEEECHHHHHHHHHHCCGGGGGEEEEEECSGGGGG-C-TTTHHHHHHHHHHHHTSE
T ss_pred CCCEEEEEECCCCCCHHHC-CCCCEEEECHHHHHHHHHCCHHHHHCCCEEEEECHHHCC-C-CCCCHHHHHHHHHCCCCC
T ss_conf 7988999848977762013-799999985899999996785576436989995355527-8-662229999998653672
Q ss_pred EEEEECCC-CHHHHHHHHCCCCEEEECCCCCCEEEEECCCC--------------CHHH--HHHHHHHHHHHHHCCCCCC
Q ss_conf 99981357-97879977389895852685233015544799--------------0469--9999999999851299998
Q 001722 470 LIVTSATL-NAQKFSDFFGSVPIFHIPGRTFPVNTLYSKTP--------------CEDY--VEAAVKQAMTIHITSPPGD 532 (1020)
Q Consensus 470 iIlmSATl-d~~~f~~~f~~~pii~i~gr~~pV~i~y~~~~--------------~~dy--l~~ai~~vl~i~~~~~~G~ 532 (1020)
+|+||||+ |++.+++||+ ++++..+++.+|+...+...+ ...+ ....+..+...+ .++++
T Consensus 178 ii~lSATl~n~~~~~~~l~-~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 254 (715)
T 2va8_A 178 LLALSATISNYKQIAKWLG-AEPVATNWRPVPLIEGVIYPERKKKEYNVIFKDNTTKKVHGDDAIIAYTLDSL--SKNGQ 254 (715)
T ss_dssp EEEEESCCTTHHHHHHHHT-CEEEECCCCSSCEEEEEEEECSSTTEEEEEETTSCEEEEESSSHHHHHHHHHH--TTTCC
T ss_pred EEEECCCCCCHHHHHHHHC-CCCCCCCCCCCCCEEEEEECCCCCCCEEEECCCCHHHHCCCCHHHHHHHHHHH--HCCCC
T ss_conf 8997178799999999849-97457999988746888835876654046527604432134438999999998--66997
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHH-------------HHCCCC----------CCCCCEEEEEECCCCCHHHHHHHHHHH
Q ss_conf 899908988999999999999998-------------520246----------899981899844999999999999883
Q 001722 533 ILIFMTGQDEIEAACFALKERMEQ-------------LISSTT----------REVPELLILPIYSQLPADLQAKIFEKA 589 (1020)
Q Consensus 533 ILVFl~g~~eie~~~~~L~~~l~~-------------l~~~~~----------~~~~~l~Il~lhs~L~~~~q~~I~~~f 589 (1020)
+|||++++++++.++..|.+.+.. ...... .......+.++||+|+.++|..+++.|
T Consensus 255 ~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v~~~f 334 (715)
T 2va8_A 255 VLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDLIEEGF 334 (715)
T ss_dssp EEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHH
T ss_pred EEEEECCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCEEEECCCCCHHHHHHHHHHH
T ss_conf 79997988999999999999876542886778999999998663455322999999966878878999999999999999
Q ss_pred CCCCEEEEEECCHHHCCCCCCCEEEEEECCCCCCEECCCCCCCCCCCCCCCCHHHHHHHHCCCCCCC---CCEEEECCCH
Q ss_conf 1899079995430000478898659997598652001687896433201159987999832039999---9789990394
Q 001722 590 KEGTRKCIVATNIAETSLTVDGIFYVIDTGYGKMKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTG---PGTCYRLYTE 666 (1020)
Q Consensus 590 ~~g~rkVIVATniaEtGItIp~V~~VID~G~~k~~~yd~~~g~~~L~~~piS~asa~QRaGRAGR~g---~G~cyrLyt~ 666 (1020)
+.|.++||||||++++|||+|++++||++ ..+||++++.. ..|+|.+++.||+|||||.| +|.||+||++
T Consensus 335 ~~g~~~vlvaT~~l~~Gidip~~~~VI~~----~~~~d~~~~~~---~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~ 407 (715)
T 2va8_A 335 RQRKIKVIVATPTLAAGVNLPARTVIIGD----IYRFNKKIAGY---YDEIPIMEYKQMSGRAGRPGFDQIGESIVVVRD 407 (715)
T ss_dssp HTTCSCEEEECGGGGGSSCCCBSEEEECC----C-----------------CHHHHHHHHTTBCCTTTCSCEEEEEECSC
T ss_pred HCCCCEEEEECHHHHCCCCCCCEEEEEEC----CEECCCCCCCC---CCCCCHHHHHHHHHHCCCCCCCCCCEEEEEECC
T ss_conf 86998599978087661688854999918----75644667778---775999999998424279988887569999678
Q ss_pred HH-HHHCC--CCCCCCHHCCCCHHH------HHHHHHHCCCC----CCCCC---CCCC-CCCHHHHHHHHHHHHHHCCCC
Q ss_conf 66-73106--999951000254368------99997522658----66677---7899-997434999999998806755
Q 001722 667 SA-YLNEM--LPSPVPEIQRTNLGN------VVLLLKSLKID----NLLDF---DFMD-PPPQENILNSMYQLWVLGALN 729 (1020)
Q Consensus 667 ~~-~~~~l--~~~~~PEI~r~~L~~------~vL~lk~lgi~----~l~~f---~~~d-pP~~~~i~~al~~L~~lgaLd 729 (1020)
.. +...+ .....||+.+++|.+ .+|.++++|.. ++..| .|+. +|+...+..++..|..+|+|+
T Consensus 408 ~~~~~~~~~~~l~~~~e~~~s~l~~~~~l~~~~l~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~al~~L~~~g~i~ 487 (715)
T 2va8_A 408 KEDVDRVFKKYVLSDVEPIESKLGSERAFYTFLLGILSAEGNLSEKQLENFAYESLLAKQLVDVYFDRAIRWLLEHSFIK 487 (715)
T ss_dssp GGGHHHHHHHTTSSCCCCCCCSCCSHHHHHHHHHHHHHHHCSEEHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHTTSEE
T ss_pred CHHHHHHHHHHHCCCCCCCEECCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCEE
T ss_conf 06799999999708998735337866679999999985156688999999998507876426388999999998884976
Q ss_pred CCC---CCCHHHHHHHCCCCCHHHHHHHHHHHCC---CCHHHHHHHHHHHC-CCCCCCCCCCHHHHHHHHH---HHHCC-
Q ss_conf 789---7669888861299994889987543102---85799999999707-9985568710499999998---53014-
Q 001722 730 NVG---ALTDLGWKMVEFPLDPPLAKMLLMGEQL---GCLDEVLTIVSMLS-VPSVFFRPKDRAEESDAAR---EKFFV- 798 (1020)
Q Consensus 730 ~~g---~LT~lG~~ma~lPldp~lak~li~~~~~---~c~~e~l~Iva~Ls-~~~~f~~p~~~~~~~~~~r---~~f~~- 798 (1020)
.++ .+|++|+.|+.+|++|.+++|++.+... .|..+++.|+|+.+ .++++++|.+...-.+... ..+..
T Consensus 488 ~~~~~~~~t~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~e~~~~~~r~~e~~~l~~~~~~~~~~~~~~ 567 (715)
T 2va8_A 488 EEGNTFALTNFGKRVADLYINPFTADIIRKGLEGHKASCELAYLHLLAFTPDGPLVSVGRNEEEELIELLEDLDCELLIE 567 (715)
T ss_dssp ECSSEEEECHHHHHHHHHTCCHHHHHHHHHHHHHSCCCCHHHHHHHHHHSTTSCCCCCCHHHHHHHHHHHTTCSSCCSSC
T ss_pred ECCCEEEECHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCHHHCCC
T ss_conf 66986866768999999748986799999986542578789999995268433457648678999999998521111136
Q ss_pred -C-CC-------CHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf -7-87-------277899999999951110113676104738899999999999999986
Q 001722 799 -Q-ES-------DHLTLLYVYQQWKEHQYRGDWCEEHYLHVKSLRKAREVRSQLLDILKT 849 (1020)
Q Consensus 799 -~-~s-------Dhltll~vy~~w~~~~~~~~wC~~~~l~~~~l~~a~~ir~qL~~~l~~ 849 (1020)
+ .. .|+-..-+.+.|.+...-..+|..+.+....+..+.+....|...+..
T Consensus 568 ~~~~~~~~~~~~~~~k~~~ll~~~~~~~~~~~i~~~y~~~~gdl~~l~~~a~~l~~a~~~ 627 (715)
T 2va8_A 568 EPYEEDEYSLYINALKVALIMKDWMDEVDEDTILSKYNIGSGDLRNMVETMDWLTYSAYH 627 (715)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 665431023457779999999999849987899999789824499999999999999999
No 3
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=1.00 E-value=1 Score=495.37 Aligned_cols=505 Identities=16% Similarity=0.161 Sum_probs=375.3
Q ss_pred CCCCHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHH--HHCCCCCCE
Q ss_conf 799679999999999909929999028996478999999971225998999983518999999999999--840202897
Q 001722 321 YLPIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSE--EMDTELGDK 398 (1020)
Q Consensus 321 ~LPi~~~q~eil~~i~~~q~vII~gpTGSGKTtqipq~Lle~~~~~~~~Ii~tqPrRvlA~sva~rva~--e~~~~lG~~ 398 (1020)
.-..+++|.+++..+.++++++++||||||||+++++++++... .+++++|++|+|++|.++++++.. .+|..++..
T Consensus 23 ~~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~-~~~~~l~i~P~r~La~q~~~~~~~~~~~g~~v~~~ 101 (702)
T 2p6r_A 23 IEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAI-KGGKSLYVVPLRALAGEKYESFKKWEKIGLRIGIS 101 (702)
T ss_dssp --CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHH-TTCCEEEEESSHHHHHHHHHHHTTTTTTTCCEEEE
T ss_pred CCCCCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHH-HCCCEEEEECCHHHHHHHHHHHHHHHHCCCEEEEE
T ss_conf 98899999999999838996899868961799999999999998-68959999370999999999999777049889998
Q ss_pred EEEEEEEEECCCCCCCEEEECHHHHHHHHHCCCC-CCCCCEEEEECCCC-----CCCCCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf 7789832103799810999722888998802999-99831799818886-----78780089999999996149944999
Q 001722 399 VGYAIRFEDVTGPSTLIKYMTDGVLLRETLKDSD-LDKYRVIVMDEAHE-----RSLSTDVLFGILKKVVARRRDFKLIV 472 (1020)
Q Consensus 399 VGy~ir~e~~~s~~t~I~~~T~g~LLr~l~~d~~-L~~~s~IIIDEaHE-----Rs~~tD~Ll~lLk~il~~r~~lkiIl 472 (1020)
+|+..+.+... ..++|+++|+|.|.+.+..++. +.++++|||||+|+ |+...+.++..++. .++++++|+
T Consensus 102 ~G~~~~~~~~~-~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~~---~~~~~~ii~ 177 (702)
T 2p6r_A 102 TGDYESRDEHL-GDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHLLDSEKRGATLEILVTKMRR---MNKALRVIG 177 (702)
T ss_dssp CSSCBCCSSCS-TTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGGGGCTTTHHHHHHHHHHHHH---HCTTCEEEE
T ss_pred ECCCCCCHHHC-CCCCEEEECHHHHHHHHHCCHHHHHHCCEEEEEEEEECCCCCCCCHHHHHHHHHHH---CCCCCEEEE
T ss_conf 38877664352-69999998989999999757557762598988502554787765279999999984---386765999
Q ss_pred EECCC-CHHHHHHHHCCCCEEEECCCCCCEEEEECCCCCHHHHHH---------HHHHHHHHHHCCCCCCEEEECCCHHH
Q ss_conf 81357-978799773898958526852330155447990469999---------99999998512999988999089889
Q 001722 473 TSATL-NAQKFSDFFGSVPIFHIPGRTFPVNTLYSKTPCEDYVEA---------AVKQAMTIHITSPPGDILIFMTGQDE 542 (1020)
Q Consensus 473 mSATl-d~~~f~~~f~~~pii~i~gr~~pV~i~y~~~~~~dyl~~---------ai~~vl~i~~~~~~G~ILVFl~g~~e 542 (1020)
||||+ |.+.+++|++ ++++..+++.+|+...+...+...+... ....+.... .+.+++|||++++++
T Consensus 178 lSATl~n~~~~~~~l~-~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~LVF~~s~~~ 254 (702)
T 2p6r_A 178 LSATAPNVTEIAEWLD-ADYYVSDWRPVPLVEGVLCEGTLELFDGAFSTSRRVKFEELVEECV--AENGGVLVFESTRRG 254 (702)
T ss_dssp EECCCTTHHHHHHHTT-CEEEECCCCSSCEEEEEECSSEEEEEETTEEEEEECCHHHHHHHHH--HTTCCEEEECSSHHH
T ss_pred ECCCCCCHHHHHHHHC-CCCCCCCCCCCCCEEEEEECCEEECCCCCHHHHHHHHHHHHHHHHH--HCCCCEEEECCCHHH
T ss_conf 7887689999999848-9723688877664688861782310576301444546999999999--669978998388789
Q ss_pred HHHHHHHHHHHHHHHHCCCC------CC-----------CCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCHHHC
Q ss_conf 99999999999998520246------89-----------99818998449999999999998831899079995430000
Q 001722 543 IEAACFALKERMEQLISSTT------RE-----------VPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAET 605 (1020)
Q Consensus 543 ie~~~~~L~~~l~~l~~~~~------~~-----------~~~l~Il~lhs~L~~~~q~~I~~~f~~g~rkVIVATniaEt 605 (1020)
++.++..|.+.+........ .. .....+.++||+|+.++|..+++.|++|.++|||||+++++
T Consensus 255 ~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~ 334 (702)
T 2p6r_A 255 AEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRGNIKVVVATPTLAA 334 (702)
T ss_dssp HHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHHHHHHHTTSCCEEEECSTTTS
T ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHHCCEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCHHHC
T ss_conf 99999999999876469588999998624553219999998469288669999999999999998799849997838866
Q ss_pred CCCCCCEEEEEECCCCCCEECCCCCCCCCCCCCCCCHHHHHHHHCCCCCCC---CCEEEECCCHHHHHHCC--CCCCCCH
Q ss_conf 478898659997598652001687896433201159987999832039999---97899903946673106--9999510
Q 001722 606 SLTVDGIFYVIDTGYGKMKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTG---PGTCYRLYTESAYLNEM--LPSPVPE 680 (1020)
Q Consensus 606 GItIp~V~~VID~G~~k~~~yd~~~g~~~L~~~piS~asa~QRaGRAGR~g---~G~cyrLyt~~~~~~~l--~~~~~PE 680 (1020)
|||+|++++||++ ...|| |. ..|.|.+++.||+|||||.| +|.||+++++..+...+ .....||
T Consensus 335 Gidip~~~~VI~~----~~~yd---~~----~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~~~~~~~l~~~~e 403 (702)
T 2p6r_A 335 GVNLPARRVIVRS----LYRFD---GY----SKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGKRDREIAVKRYIFGEPE 403 (702)
T ss_dssp SSCCCBSEEEECC----SEEES---SS----EEECCHHHHHHHHTTBSCTTTCSCEEEEEECCGGGHHHHHHTTTSSCCC
T ss_pred CCCCCCEEEEECC----CEEEC---CC----CCCCCHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHCCCCC
T ss_conf 5788733999847----62307---87----7758999999984332799999873699995573189999999608998
Q ss_pred HCCCCHHH------HHHHHHHCCCC----CCCCC---CCC----CCCCHHHHHHHHHHHHHHCCCCCC--CCCCHHHHHH
Q ss_conf 00254368------99997522658----66677---789----999743499999999880675578--9766988886
Q 001722 681 IQRTNLGN------VVLLLKSLKID----NLLDF---DFM----DPPPQENILNSMYQLWVLGALNNV--GALTDLGWKM 741 (1020)
Q Consensus 681 I~r~~L~~------~vL~lk~lgi~----~l~~f---~~~----dpP~~~~i~~al~~L~~lgaLd~~--g~LT~lG~~m 741 (1020)
+.+++|.+ .+|.+.+.|.. ++..| .|+ ++|+.+.+..++..|..+|+|+.+ +.+|++|+.|
T Consensus 404 ~~~s~l~~~~~l~~~~l~~~~~g~~~~~~~~~~~l~~t~~~~~~~~~~~~~~~~al~~L~~~g~i~~~~~~~~t~lG~~~ 483 (702)
T 2p6r_A 404 RITSKLGVETHLRFHSLSIICDGYAKTLEELEDFFADTFFFKQNEISLSYELERVVRQLENWGMVVEAAHLAPTKLGSLV 483 (702)
T ss_dssp CCCCCCCSHHHHHHHHHHHHHHTSCSSHHHHHHHHHTSTTHHHHCCCCHHHHHHHHHHHHHTTSEEESSSEEECHHHHHH
T ss_pred CCEEECCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCEECCCHHHHHH
T ss_conf 84651686055899999999717788899999999850677750178999999999999988594289906648699999
Q ss_pred HCCCCCHHHHHHHHHHHCC--CCHHHHHHHHHHHCC-CCCCCCCCCHHHHHHHH-H--HHH-CCC--CC-------CHHH
Q ss_conf 1299994889987543102--857999999997079-98556871049999999-8--530-147--87-------2778
Q 001722 742 VEFPLDPPLAKMLLMGEQL--GCLDEVLTIVSMLSV-PSVFFRPKDRAEESDAA-R--EKF-FVQ--ES-------DHLT 805 (1020)
Q Consensus 742 a~lPldp~lak~li~~~~~--~c~~e~l~Iva~Ls~-~~~f~~p~~~~~~~~~~-r--~~f-~~~--~s-------Dhlt 805 (1020)
+.+|++|.++++++.+... .|..+++.|+|+.+. +++++++.+ .+-.+.. + ..+ -.+ .. .|+-
T Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~e~~~i~~r~~e-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 562 (702)
T 2p6r_A 484 SRLYIDPLTGFIFHDVLSRMELSDIGALHLICRTPDMERLTVRKTD-SWVEEEAFRLRKELSYYPSDFSVEYDWFLSEVK 562 (702)
T ss_dssp HHTTCCHHHHHHHHHHTTTCCCCHHHHHHHHHHSTTSCCCCCCTTT-HHHHHHHHHHGGGSSCCCCTTSTTHHHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCCH-HHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 9985789899999997430468789999995377444457778765-999999986546666786300001234566699
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q ss_conf 9999999995111011367610473889999999999999
Q 001722 806 LLYVYQQWKEHQYRGDWCEEHYLHVKSLRKAREVRSQLLD 845 (1020)
Q Consensus 806 ll~vy~~w~~~~~~~~wC~~~~l~~~~l~~a~~ir~qL~~ 845 (1020)
..-+.+.|.+...-...|.++.+....++.+.+-...|..
T Consensus 563 ~~~lL~~~~~~~~l~~i~~~~~~~~gdl~~i~~~a~~l~~ 602 (702)
T 2p6r_A 563 TALCLKDWIEEKDEDEICAKYGIAPGDLRRIVETAEWLSN 602 (702)
T ss_dssp HHHHHHHHHTTCCHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 9999999982798688998857767759999999999999
No 4
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=1.00 E-value=1 Score=482.96 Aligned_cols=513 Identities=17% Similarity=0.167 Sum_probs=362.8
Q ss_pred HHHHHHHHCCCCCHHHHHHHHHH-HHHCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHH
Q ss_conf 29999997079967999999999-99099299990289964789999999712259989999835189999999999998
Q 001722 312 SKTLAEQRQYLPIFSVRDELLQV-IRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEE 390 (1020)
Q Consensus 312 ~~~l~~~R~~LPi~~~q~eil~~-i~~~q~vII~gpTGSGKTtqipq~Lle~~~~~~~~Ii~tqPrRvlA~sva~rva~e 390 (1020)
..+.+..+..-..+++|.+++.. +.++++++++||||||||+++++++++.....+++++|++|++++|.++++++. .
T Consensus 12 ~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~~l~i~P~raLa~q~~~~~~-~ 90 (720)
T 2zj8_A 12 IKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQGGKAVYIVPLKALAEEKFQEFQ-D 90 (720)
T ss_dssp HHHHHHHTTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHHCSEEEEECSSGGGHHHHHHHTG-G
T ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHH-H
T ss_conf 999998779988999999999998557994899869963799999999999998679989998596999999999999-8
Q ss_pred HCCCCCCEEEEEEE---EEECCCCCCCEEEECHHHHHHHHHCCCC-CCCCCEEEEECCC-----CCCCCCCHHHHHHHHH
Q ss_conf 40202897778983---2103799810999722888998802999-9983179981888-----6787800899999999
Q 001722 391 MDTELGDKVGYAIR---FEDVTGPSTLIKYMTDGVLLRETLKDSD-LDKYRVIVMDEAH-----ERSLSTDVLFGILKKV 461 (1020)
Q Consensus 391 ~~~~lG~~VGy~ir---~e~~~s~~t~I~~~T~g~LLr~l~~d~~-L~~~s~IIIDEaH-----ERs~~tD~Ll~lLk~i 461 (1020)
+. ..|..|+.... .+......+.|+|+|++.+.+.+..++. +.++++|||||+| +|+...+.++..++
T Consensus 91 l~-~~g~~v~~~~G~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~-- 167 (720)
T 2zj8_A 91 WE-KIGLRVAMATGDYDSKDEWLGKYDIIIATAEKFDSLLRHGSSWIKDVKILVADEIHLIGSRDRGATLEVILAHML-- 167 (720)
T ss_dssp GG-GGTCCEEEECSCSSCCCGGGGGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHHB--
T ss_pred HH-HCCCEEEEECCCCCCCCCCCCCCCEEEECHHHHHHHHHCCHHHHHCCCEEEEECCCCCCCCCCCHHHHHHHHHHH--
T ss_conf 87-359779996389776412147999999888999999975714665279899989855678764479999999864--
Q ss_pred HHHCCCCEEEEEECCC-CHHHHHHHHCCCCEEEECCCCCCEEEEECCCCCHHH-------HHHHHHHHHHHHHCCCCCCE
Q ss_conf 9614994499981357-978799773898958526852330155447990469-------99999999998512999988
Q 001722 462 VARRRDFKLIVTSATL-NAQKFSDFFGSVPIFHIPGRTFPVNTLYSKTPCEDY-------VEAAVKQAMTIHITSPPGDI 533 (1020)
Q Consensus 462 l~~r~~lkiIlmSATl-d~~~f~~~f~~~pii~i~gr~~pV~i~y~~~~~~dy-------l~~ai~~vl~i~~~~~~G~I 533 (1020)
.++++|+||||+ |++.+++||+ ++.+...++++|+...+...+...+ .......+...+ .+.+++
T Consensus 168 ----~~~~ii~lSATl~n~~~~~~~l~-~~~~~~~~rp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 240 (720)
T 2zj8_A 168 ----GKAQIIGLSATIGNPEELAEWLN-AELIVSDWRPVKLRRGVFYQGFVTWEDGSIDRFSSWEELVYDAI--RKKKGA 240 (720)
T ss_dssp ----TTBEEEEEECCCSCHHHHHHHTT-EEEEECCCCSSEEEEEEEETTEEEETTSCEEECSSTTHHHHHHH--HTTCCE
T ss_pred ----CCCEEEEECCCCCCHHHHHHHHC-CCCCCCCCCCCCCEEEEEECCEEECCCCCHHHHHHHHHHHHHHH--HCCCCE
T ss_conf ----07769997588689999999829-86037898887636889757813116532000169999999998--679988
Q ss_pred EEECCCHHHHHHHHHHHHHHHHHHHCCC--------C------------CCCCCEEEEEECCCCCHHHHHHHHHHHCCCC
Q ss_conf 9990898899999999999999852024--------6------------8999818998449999999999998831899
Q 001722 534 LIFMTGQDEIEAACFALKERMEQLISST--------T------------REVPELLILPIYSQLPADLQAKIFEKAKEGT 593 (1020)
Q Consensus 534 LVFl~g~~eie~~~~~L~~~l~~l~~~~--------~------------~~~~~l~Il~lhs~L~~~~q~~I~~~f~~g~ 593 (1020)
|||++++++++.++..|.+.+..+.... . .......+.++||+|+.++|..+++.|+.|.
T Consensus 241 LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~ 320 (720)
T 2zj8_A 241 LIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEENFRKGI 320 (720)
T ss_dssp EEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTS
T ss_pred EEEECCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCEEEECCCCCHHHHHHHHHHHHCCC
T ss_conf 99965879999999999999987459066899999999875166508899998519463248999999999999997799
Q ss_pred EEEEEECCHHHCCCCCCCEEEEEECCCCCCEECCCCCCCCCCCCCCCCHHHHHHHHCCCCCCC---CCEEEECCCHHHHH
Q ss_conf 079995430000478898659997598652001687896433201159987999832039999---97899903946673
Q 001722 594 RKCIVATNIAETSLTVDGIFYVIDTGYGKMKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTG---PGTCYRLYTESAYL 670 (1020)
Q Consensus 594 rkVIVATniaEtGItIp~V~~VID~G~~k~~~yd~~~g~~~L~~~piS~asa~QRaGRAGR~g---~G~cyrLyt~~~~~ 670 (1020)
++|||||+++++|||+|++++||+.+ ..|| ..| ..|.|.+++.||+|||||.| +|.||+++++..+.
T Consensus 321 ~~vlvaT~~l~~Gvdip~~~~VI~~~----~~yd-~~g-----~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~ 390 (720)
T 2zj8_A 321 IKAVVATPTLSAGINTPAFRVIIRDI----WRYS-DFG-----MERIPIIEVHQMLGRAGRPKYDEVGEGIIVSTSDDPR 390 (720)
T ss_dssp SCEEEECSTTGGGCCCCBSEEEECCS----EECC-SSS-----CEECCHHHHHHHHTTBCCTTTCSEEEEEEECSSSCHH
T ss_pred CEEEEECCHHHCCCCCCCEEEEECCC----EEEC-CCC-----CCCCCHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHH
T ss_conf 75999881866628888528998487----2406-888-----7608999999987544899888876699996671099
Q ss_pred H---CCCCCCCCHHCCC-----CHHHHHHHHHHCCCC-------CCCCCCCC------CCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 1---0699995100025-----436899997522658-------66677789------9997434999999998806755
Q 001722 671 N---EMLPSPVPEIQRT-----NLGNVVLLLKSLKID-------NLLDFDFM------DPPPQENILNSMYQLWVLGALN 729 (1020)
Q Consensus 671 ~---~l~~~~~PEI~r~-----~L~~~vL~lk~lgi~-------~l~~f~~~------dpP~~~~i~~al~~L~~lgaLd 729 (1020)
. .+.....+++... .|...++.+.+.+.. +.+.+.|+ +++..+.+..+++.|..+|+|+
T Consensus 391 ~~~~~~~~~~~~~i~s~l~~~~~l~~~ll~~i~~~~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~i~ 470 (720)
T 2zj8_A 391 EVMNHYIFGKPEKLFSQLSNESNLRSQVLALIATFGYSTVEEILKFISNTFYAYQRKDTYSLEEKIRNILYFLLENEFIE 470 (720)
T ss_dssp HHHHHHTTSCCCCCCCCTTCHHHHHHHHHHHHHHSCCCSHHHHHHHHHTSHHHHHCSCCHHHHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHCCCCCCCEEECCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCHHHHHCCCHHHHHHHHHHHHHHHHHCCCEE
T ss_conf 99999961899871765686043999999999717788999999999827687743645789999999999999887935
Q ss_pred -CCC---CCCHHHHHHHCCCCCHHHHHHHHHHHCC----CCHHHHHHHHHHHCC-CCCCCCCCCHHHHHHHHHH---HHC
Q ss_conf -789---7669888861299994889987543102----857999999997079-9855687104999999985---301
Q 001722 730 -NVG---ALTDLGWKMVEFPLDPPLAKMLLMGEQL----GCLDEVLTIVSMLSV-PSVFFRPKDRAEESDAARE---KFF 797 (1020)
Q Consensus 730 -~~g---~LT~lG~~ma~lPldp~lak~li~~~~~----~c~~e~l~Iva~Ls~-~~~f~~p~~~~~~~~~~r~---~f~ 797 (1020)
.++ .+|++|+.|+.+|++|..+++++.+... .|..+++.|+|+++. +++|++|.+..+-.+.... .+.
T Consensus 471 ~~~~~~~~~t~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~e~~~i~~r~~e~~~l~~~~~~~~~~~~ 550 (720)
T 2zj8_A 471 ISLEDKIRPLSLGIRTAKLYIDPYTAKMFKDKMEEVVKDPNPIGIFHLISLTPDITPFNYSKREFERLEEEYYEFKDRLY 550 (720)
T ss_dssp ECTTSCEEECHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCCHHHHHHHHHTSTTCCCCCCCHHHHHHHHHHHHHHGGGCS
T ss_pred ECCCCCEEECHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCC
T ss_conf 77898275576999999973899999999999876425898889999750585321266377789999999985632012
Q ss_pred ----CCCC----------CHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q ss_conf ----4787----------27789999999995111011367610473889999999999999
Q 001722 798 ----VQES----------DHLTLLYVYQQWKEHQYRGDWCEEHYLHVKSLRKAREVRSQLLD 845 (1020)
Q Consensus 798 ----~~~s----------Dhltll~vy~~w~~~~~~~~wC~~~~l~~~~l~~a~~ir~qL~~ 845 (1020)
...+ .|+-..-+.+.|.+...-...|.++.+....++.+.+-...|..
T Consensus 551 ~~~p~~~~~~~~~~~~~~~~~k~~llL~~~i~~~~l~~i~~~~~~~~gdl~~~~~~a~~l~~ 612 (720)
T 2zj8_A 551 FDDPYISGYDPYLERKFFRAFKTALVLLAWINEVPEGEIVEKYSVEPGDIYRIVETAEWLVY 612 (720)
T ss_dssp SCCTTSSCCCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 36553344420135567777999999999981798788888838876769999999999999
No 5
>3i4u_A ATP-dependent RNA helicase DHX8; splicing, ATP-binding, hydrolase, mRNA processing, splicing, nucleotide-binding, nucleus, phosphoprotein, SPLI; 2.10A {Homo sapiens}
Probab=1.00 E-value=1 Score=460.29 Aligned_cols=248 Identities=46% Similarity=0.835 Sum_probs=239.1
Q ss_pred CCCCCC-CCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCC
Q ss_conf 667778-9999743499999999880675578976698888612999948899875431028579999999970799855
Q 001722 701 LLDFDF-MDPPPQENILNSMYQLWVLGALNNVGALTDLGWKMVEFPLDPPLAKMLLMGEQLGCLDEVLTIVSMLSVPSVF 779 (1020)
Q Consensus 701 l~~f~~-~dpP~~~~i~~al~~L~~lgaLd~~g~LT~lG~~ma~lPldp~lak~li~~~~~~c~~e~l~Iva~Ls~~~~f 779 (1020)
...|+| +||||.+++..|++.|+.|||||++|.||++|+.|+.||+||++||||+.+..++|++++++||||||++++|
T Consensus 5 ~~~l~~~ldpP~~~~l~~A~~~L~~LgAld~~g~lT~lG~~ma~lPl~P~lakmLl~a~~~~c~~~~l~iaA~Ls~~~~f 84 (270)
T 3i4u_A 5 GPEFELGTRGSPMETLITAMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTIVSMLSVQNVF 84 (270)
T ss_dssp ---------CCHHHHHHHHHHHHHHHTSBCTTSCBCHHHHHHTTSCSCHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCCB
T ss_pred HHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCC
T ss_conf 10266689994999999999999986894799982689999971899879999999821238899999999997798634
Q ss_pred CCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 68710499999998530147872778999999999511101136761047388999999999999999863999889999
Q 001722 780 FRPKDRAEESDAAREKFFVQESDHLTLLYVYQQWKEHQYRGDWCEEHYLHVKSLRKAREVRSQLLDILKTLKIPLTSSGH 859 (1020)
Q Consensus 780 ~~p~~~~~~~~~~r~~f~~~~sDhltll~vy~~w~~~~~~~~wC~~~~l~~~~l~~a~~ir~qL~~~l~~~~~~~~s~~~ 859 (1020)
++|.+++++++.+|.+|..++|||+|+||+|++|+.++.+..||++|||++++|+++.++|.||..+|++.+++..+++.
T Consensus 85 ~~p~~~~~~a~~~~~~f~~~~sD~ltlLn~~~~~~~~~~~~~wC~~~fL~~~~l~~~~~ir~QL~~~l~~~~~~~~s~~~ 164 (270)
T 3i4u_A 85 YRPKDKQALADQKKAKFHQTEGDHLTLLAVYNSWKNNKFSNPWCYENFIQARSLRRAQDIRKQMLGIMDRHKLDVVSCGK 164 (270)
T ss_dssp CCCGGGHHHHHHHHHTTCBTTBHHHHHHHHHHHHHHTTTCHHHHHHTTBCHHHHHHHHHHHHHHHHHHHHTTCCCCCCTT
T ss_pred CCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 59723699999999873588876999999999999737536689884489999999999999999989873998677721
Q ss_pred CHHHHHHHHHHHCCCHHHHHCCCCEEEEECCCCCEEECCCCCCCCCCCCCCCEEEEEEECCHHHHHHHCCCCCHHHHHHH
Q ss_conf 86899999983113013340287104772399401208999433789998710654333131454443244598889731
Q 001722 860 DFDVVRKAICSAYFHNAARLKGVGEYINCRNGMPCHLHPSSAIYGLGYTPEYVVYHELILTTKEYMQCATAVEPQWLSEL 939 (1020)
Q Consensus 860 ~~~~i~~~l~~g~~~nvA~~~~~g~y~~~~~~~~v~lHPsS~L~~~~~~p~~vvy~elv~t~k~y~r~vt~I~~~wL~e~ 939 (1020)
+++.|++|||+|||+|+|++++.+.|.++.+++.|+|||+|+||+ ..|+||||+|++.|+|.|||+||+|+|+||.++
T Consensus 165 ~~~~i~~~L~aG~~~nvA~~~~~~~Y~~~~~~~~v~iHPsS~L~~--~~p~wvvy~Elv~Tsk~y~r~vt~I~p~wL~~~ 242 (270)
T 3i4u_A 165 STVRVQKAICSGFFRNAAKKDPQEGYRTLIDQQVVYIHPSSALFN--RQPEWVVYHELVLTTKEYMREVTTIDPRWLVEF 242 (270)
T ss_dssp CTHHHHHHHHHHHGGGEEEECSSSSEEETTTCCEEEECTTSTTTT--SCCSEEEEEEEEESSSEEEEEEEECCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHEECCCCCEEECCCCCEEEECCHHHHCC--CCCCEEEEEEHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf 689999999998488782237888668715897799885045308--999879998556414768774001689999998
Q ss_pred CCCCEEECCCC
Q ss_conf 79651003786
Q 001722 940 GPMFFSVKDSD 950 (1020)
Q Consensus 940 ~p~~~~~~~~~ 950 (1020)
+|+||..++.+
T Consensus 243 ap~~~~~~~~~ 253 (270)
T 3i4u_A 243 APAFFKVLEVD 253 (270)
T ss_dssp CTTTEECC---
T ss_pred HHHHHCCCCCC
T ss_conf 48873400246
No 6
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=1.00 E-value=1 Score=361.94 Aligned_cols=454 Identities=16% Similarity=0.167 Sum_probs=309.5
Q ss_pred CHHHHHHHHHHHH-HCCEEEEEECCCCCHHHHHHHHHHHHCCC-CCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 6799999999999-09929999028996478999999971225-998999983518999999999999840202897778
Q 001722 324 IFSVRDELLQVIR-ENQVVVVVGETGSGKTTQLTQYLLEDGYT-TNGIVGCTQPRRVAAMSVAKRVSEEMDTELGDKVGY 401 (1020)
Q Consensus 324 i~~~q~eil~~i~-~~q~vII~gpTGSGKTtqipq~Lle~~~~-~~~~Ii~tqPrRvlA~sva~rva~e~~~~lG~~VGy 401 (1020)
..++|.+++..+. .+++++|+||||||||+++..+++..... .+++++++.|+|++|.+++..+.+.++..+|..|+.
T Consensus 927 fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~~~~kavyi~P~raLa~q~~~~~~~~f~~~~g~~V~~ 1006 (1724)
T 4f92_B 927 FNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQSSEGRCVYITPMEALAEQVYMDWYEKFQDRLNKKVVL 1006 (1724)
T ss_dssp CCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHHHTTTSCCCEEE
T ss_pred CCHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCHHCCCEEEE
T ss_conf 99799999999966899689993798874699999999999858998799986829999999999999844220978999
Q ss_pred EEEEEE---CCCCCCCEEEECHHHHHHHHH---CCCCCCCCCEEEEECCCC----CCCCCCHHHHHHHHHHH-HCCCCEE
Q ss_conf 983210---379981099972288899880---299999831799818886----78780089999999996-1499449
Q 001722 402 AIRFED---VTGPSTLIKYMTDGVLLRETL---KDSDLDKYRVIVMDEAHE----RSLSTDVLFGILKKVVA-RRRDFKL 470 (1020)
Q Consensus 402 ~ir~e~---~~s~~t~I~~~T~g~LLr~l~---~d~~L~~~s~IIIDEaHE----Rs~~tD~Ll~lLk~il~-~r~~lki 470 (1020)
..+... .......|+++|||.+...+. ....+.++++||+||+|. |+...+.++..++.+.. ..+++|+
T Consensus 1007 ltGd~~~~~~~~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l~d~rg~~le~il~rl~~i~~~~~~~~ri 1086 (1724)
T 4f92_B 1007 LTGETSTDLKLLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGENGPVLEVICSRMRYISSQIERPIRI 1086 (1724)
T ss_dssp CCSCHHHHHHHHHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGGGSTTHHHHHHHHHHHHHHHHTTSSCCEE
T ss_pred EECCCCCCHHHCCCCCEEEECHHHHHHHHHCCCCCCCCCEEEEEEEECHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCEE
T ss_conf 97997812111589999998879999998384446413523189701011047878763999999999998636888639
Q ss_pred EEEECCC-CHHHHHHHHCCC--CEEEEC--CCCCCEEEEECCCCCHHH---HHHHHHHHH-HHHHCCCCCCEEEECCCHH
Q ss_conf 9981357-978799773898--958526--852330155447990469---999999999-9851299998899908988
Q 001722 471 IVTSATL-NAQKFSDFFGSV--PIFHIP--GRTFPVNTLYSKTPCEDY---VEAAVKQAM-TIHITSPPGDILIFMTGQD 541 (1020)
Q Consensus 471 IlmSATl-d~~~f~~~f~~~--pii~i~--gr~~pV~i~y~~~~~~dy---l~~ai~~vl-~i~~~~~~G~ILVFl~g~~ 541 (1020)
|+||||+ |++.+++|++.. .++.+. .|..|.+.+....+...+ .....+.+. .+....+.+.+|||++++.
T Consensus 1087 I~lSATl~N~~dla~WL~~~~~~~~~~~~~~RPvpL~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~lVF~~sR~ 1166 (1724)
T 4f92_B 1087 VALSSSLSNAKDVAHWLGCSATSTFNFHPNVRPVPLELHIQGFNISHTQTRLLSMAKPVYHAITKHSPKKPVIVFVPSRK 1166 (1724)
T ss_dssp EEEESCBTTHHHHHHHHTCCSTTEEECCGGGCSSCEEEEEEEECCCSHHHHHHTTHHHHHHHHHHHCSSSCEEEEESSHH
T ss_pred EEEECCCCCHHHHHHHHCCCCCCEEEECCCCCCCCEEEEEEECCCCCCHHHHHHHCCHHHHHHHHHCCCCCEEEECCCHH
T ss_conf 99928889999999986799877589488888887089998036777166665320149999998537997215578889
Q ss_pred HHHHHHHHHHHHHHHHHCCCC---------------------CCCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 999999999999998520246---------------------89998189984499999999999988318990799954
Q 001722 542 EIEAACFALKERMEQLISSTT---------------------REVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVAT 600 (1020)
Q Consensus 542 eie~~~~~L~~~l~~l~~~~~---------------------~~~~~l~Il~lhs~L~~~~q~~I~~~f~~g~rkVIVAT 600 (1020)
.++.++..|...+........ .......|..+|++|+..+|..|++.|..|.++|||||
T Consensus 1167 ~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GIa~hHagL~~~~R~~VE~lF~~G~i~VLvaT 1246 (1724)
T 4f92_B 1167 QTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYLHEGLSPMERRLVEQLFSSGAIQVVVAS 1246 (1724)
T ss_dssp HHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTTEEEECTTSCHHHHHHHHHHHHHTSBCEEEEE
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHHCCCHHHHHHHHCCEEEECCCCCHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 99999999998876264302220133999999986414288999874788997799999999999999977998499988
Q ss_pred CHHHCCCCCCCEEEEEECCCCCCEECCCCCCCCCCCCCCCCHHHHHHHHCCCCCCC---CCEEEECCCHHH--HHHCCCC
Q ss_conf 30000478898659997598652001687896433201159987999832039999---978999039466--7310699
Q 001722 601 NIAETSLTVDGIFYVIDTGYGKMKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTG---PGTCYRLYTESA--YLNEMLP 675 (1020)
Q Consensus 601 niaEtGItIp~V~~VID~G~~k~~~yd~~~g~~~L~~~piS~asa~QRaGRAGR~g---~G~cyrLyt~~~--~~~~l~~ 675 (1020)
++++.|||+|++.+||.. ...||.+.. ...|.+...|.||+|||||.| .|.|+.++.... +...+..
T Consensus 1247 ~tlA~GVnlPa~~VVI~~----~~~~dg~~~----~~~~~s~~~~~Qm~GRAGR~g~d~~G~avll~~~~~~~~~~~ll~ 1318 (1724)
T 4f92_B 1247 RSLCWGMNVAAHLVIIMD----TQYYNGKIH----AYVDYPIYDVLQMVGHANRPLQDDEGRCVIMCQGSKKDFFKKFLY 1318 (1724)
T ss_dssp GGGSSSCCCCBSEEEEEC----SEEEETTTT----EEEECCHHHHHHHHTTBCCTTTCSCEEEEEEEEGGGHHHHHHHTT
T ss_pred HHHHCCCCCCCCEEEEEC----CCCCCCCCC----CCCCCCHHHHHHHHCCCCCCCCCCCEEEEEEECCHHHHHHHHHHC
T ss_conf 699757898861899956----711367555----667799999997615135788788628999965457789999737
Q ss_pred CCCCHHCCCCH----HHHHHHHHHCCC-CC------CCCCCC-------------CC--------CCCHHHHHHHHHHHH
Q ss_conf 99510002543----689999752265-86------667778-------------99--------997434999999998
Q 001722 676 SPVPEIQRTNL----GNVVLLLKSLKI-DN------LLDFDF-------------MD--------PPPQENILNSMYQLW 723 (1020)
Q Consensus 676 ~~~PEI~r~~L----~~~vL~lk~lgi-~~------l~~f~~-------------~d--------pP~~~~i~~al~~L~ 723 (1020)
. |+...+.| ...++...+.|. .+ .+...| +. ..-.+.+..++..|.
T Consensus 1319 ~--~~pveS~L~~~l~~~l~~eI~~~~i~~~~d~~~~l~~Tfl~~r~~~nP~~y~l~~~~~~~~~~~l~~lv~~~l~~L~ 1396 (1724)
T 4f92_B 1319 E--PLPVESHLDHCMHDHFNAEIVTKTIENKQDAVDYLTWTFLYRRMTQNPNYYNLQGISHRHLSDHLSELVEQTLSDLE 1396 (1724)
T ss_dssp S--CBCCCCCGGGSCHHHHHHHHHTTSCCBHHHHHHHHTTSSHHHHHHHSGGGTTCSCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred C--CCCEEEECCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 9--97035454411178999999854348899999999730799987307320256653355678999999999999999
Q ss_pred HHCCCC--CCC--CCCHHHHHHHCCCCCHHHHHHHHHHHCCCC-HHHHHHHHHHHCC-CCCCCCCCCHHH
Q ss_conf 806755--789--766988886129999488998754310285-7999999997079-985568710499
Q 001722 724 VLGALN--NVG--ALTDLGWKMVEFPLDPPLAKMLLMGEQLGC-LDEVLTIVSMLSV-PSVFFRPKDRAE 787 (1020)
Q Consensus 724 ~lgaLd--~~g--~LT~lG~~ma~lPldp~lak~li~~~~~~c-~~e~l~Iva~Ls~-~~~f~~p~~~~~ 787 (1020)
..|+|. +++ ..|++|+.|+.++++|..+++++.+...++ +..++.|+|.... .++..+..+...
T Consensus 1397 ~~~~I~~~~~~~l~~T~lG~i~s~~yi~~~t~~~~~~~l~~~~~~~~~L~il~~a~ef~~i~~R~~E~~~ 1466 (1724)
T 4f92_B 1397 QSKCISIEDEMDVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKVRGLIEIISNAAEYENIPIRHHEDNL 1466 (1724)
T ss_dssp HTTSEEEETTTEEEECHHHHHHHHTTCCHHHHHHHHHHCCTTCCHHHHHHHHHTSGGGTTCCCCTTHHHH
T ss_pred HCCCEEECCCCCEEECHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHH
T ss_conf 8889998699878666899999997789999999998544369888899884078454566436068999
No 7
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=356.60 Aligned_cols=331 Identities=18% Similarity=0.185 Sum_probs=251.2
Q ss_pred HCCCCCHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCE
Q ss_conf 70799679999999999909929999028996478999999971225998999983518999999999999840202897
Q 001722 319 RQYLPIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELGDK 398 (1020)
Q Consensus 319 R~~LPi~~~q~eil~~i~~~q~vII~gpTGSGKTtqipq~Lle~~~~~~~~Ii~tqPrRvlA~sva~rva~e~~~~lG~~ 398 (1020)
...++.+++|.+++..+..+++++|+||||||||+++..+++... ..+++++|++|+++++.|++.++...++ .
T Consensus 180 ~~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l-~~g~rvlvl~PtraLa~Q~~~~l~~~~~-----~ 253 (1108)
T 3l9o_A 180 TYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSL-KNKQRVIYTSPIKALSNQKYRELLAEFG-----D 253 (1108)
T ss_dssp CCSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHH-HTTCEEEEEESSHHHHHHHHHHHHHHTS-----S
T ss_pred HCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHH-HCCCEEEEECCCHHHHHHHHHHHHHHHC-----C
T ss_conf 479999999999999997699889988999971999999999997-5597499990849999999999999828-----9
Q ss_pred EEEEEEEEECCCCCCCEEEECHHHHHHHHHCCCC-CCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf 7789832103799810999722888998802999-998317998188867878008999999999614994499981357
Q 001722 399 VGYAIRFEDVTGPSTLIKYMTDGVLLRETLKDSD-LDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTSATL 477 (1020)
Q Consensus 399 VGy~ir~e~~~s~~t~I~~~T~g~LLr~l~~d~~-L~~~s~IIIDEaHERs~~tD~Ll~lLk~il~~r~~lkiIlmSATl 477 (1020)
||+ +.++....+.+.|++||+|+|++.+..... +.++++||||||| +..+......+-..+....+++++|+||||+
T Consensus 254 Vgl-ltGd~~~~~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDEaH-~l~d~~rg~~~e~ii~~l~~~~qvl~lSATi 331 (1108)
T 3l9o_A 254 VGL-MTGDITINPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVH-YMRDKERGVVWEETIILLPDKVRYVFLSATI 331 (1108)
T ss_dssp EEE-ECSSCBCCCSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEETGG-GTTSHHHHHHHHHHHHHSCTTSEEEEEECSC
T ss_pred CCE-EECCCCCCCCCCEEEECHHHHHHHHHCCCCCCCCCCEEEEHHHH-HCCCCCHHHHHHHHHHHCCCCCEEEEECCCC
T ss_conf 218-96765268999989967699999997475432237899870021-2023006899999998647776499972888
Q ss_pred -CHHHHHHHHCC-----CCEEEECCCCCCEEEEECCCCC---------------HHHH----------------------
Q ss_conf -97879977389-----8958526852330155447990---------------4699----------------------
Q 001722 478 -NAQKFSDFFGS-----VPIFHIPGRTFPVNTLYSKTPC---------------EDYV---------------------- 514 (1020)
Q Consensus 478 -d~~~f~~~f~~-----~pii~i~gr~~pV~i~y~~~~~---------------~dyl---------------------- 514 (1020)
+...|+.|++. +.++....+..|+..++..... ..+.
T Consensus 332 pn~~e~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 411 (1108)
T 3l9o_A 332 PNAMEFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIGDDPNSTDSRGK 411 (1108)
T ss_dssp SSCHHHHHHHHHHTCSCEEEEEECCCSSCEEEEEEETTSSCCEEEEETTTEECHHHHHHHHTTC----------------
T ss_pred CCHHHHHHHHHHHCCCCEEEEECCCCCCCCEEEEEECCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 98799999998515898279834787554068986247764256414422011566899999987541133211234332
Q ss_pred --------------HHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHHHH----------HHCC-------CCC
Q ss_conf --------------999999999851299998899908988999999999999998----------5202-------468
Q 001722 515 --------------EAAVKQAMTIHITSPPGDILIFMTGQDEIEAACFALKERMEQ----------LISS-------TTR 563 (1020)
Q Consensus 515 --------------~~ai~~vl~i~~~~~~G~ILVFl~g~~eie~~~~~L~~~l~~----------l~~~-------~~~ 563 (1020)
...+..++..+.....+.+|||++++.+|+.++..|...--. .... ...
T Consensus 412 ~~~~~~~~~~~~~~~~~l~~li~~l~~~~~~~vIVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~ 491 (1108)
T 3l9o_A 412 KGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDR 491 (1108)
T ss_dssp -------------CHHHHHHHHHHHHHTTCCCEEEEESCHHHHHHHHHHTCSHHHHCC----CHHHHGGGSCTHHHHHTT
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHHHH
T ss_conf 22234455544320568999999999628998899958487899999999864699777899999999988750464433
Q ss_pred CC---------CCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCHHHCCCCCCCEEEEEECCCCCCEECCCCCCCCC
Q ss_conf 99---------981899844999999999999883189907999543000047889865999759865200168789643
Q 001722 564 EV---------PELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAETSLTVDGIFYVIDTGYGKMKVYNPKMGMDA 634 (1020)
Q Consensus 564 ~~---------~~l~Il~lhs~L~~~~q~~I~~~f~~g~rkVIVATniaEtGItIp~V~~VID~G~~k~~~yd~~~g~~~ 634 (1020)
.. ....|.++||+|++.+|..+++.|..|.++|||||+++++|||||++++||+... .||..
T Consensus 492 ~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ikVLVAT~vla~GIDiP~v~~VI~~~~----~~d~~----- 562 (1108)
T 3l9o_A 492 ELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVR----KWDGQ----- 562 (1108)
T ss_dssp CCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCCEEEEESCCCSCCCC--CEEEESCSE----EESSS-----
T ss_pred HHHHHHHHHHHHHCCEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCEEEEECCC----CCCCC-----
T ss_conf 005688787765157565258998999999999986799849998727765778787459996576----66864-----
Q ss_pred CCCCCCCHHHHHHHHCCCCCCC---CCEEEECCCHH
Q ss_conf 3201159987999832039999---97899903946
Q 001722 635 LQVFPVSRAAADQRAGRAGRTG---PGTCYRLYTES 667 (1020)
Q Consensus 635 L~~~piS~asa~QRaGRAGR~g---~G~cyrLyt~~ 667 (1020)
...|+|.++|.||+|||||.| .|.||.++++.
T Consensus 563 -~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~ 597 (1108)
T 3l9o_A 563 -QFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEK 597 (1108)
T ss_dssp -CEEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCC
T ss_pred -CCCCCCHHHHHHHHCCCCCCCCCCCEEEEEEECCC
T ss_conf -45638999999763634778999855999995588
No 8
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=1.00 E-value=1 Score=352.34 Aligned_cols=386 Identities=17% Similarity=0.183 Sum_probs=266.4
Q ss_pred CCCCCHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCEE
Q ss_conf 07996799999999999099299990289964789999999712259989999835189999999999998402028977
Q 001722 320 QYLPIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELGDKV 399 (1020)
Q Consensus 320 ~~LPi~~~q~eil~~i~~~q~vII~gpTGSGKTtqipq~Lle~~~~~~~~Ii~tqPrRvlA~sva~rva~e~~~~lG~~V 399 (1020)
-.++..++|.+++..+..++++++++|||||||+++...+... ...+++++|++|+++++.|++.++.+.++ +..|
T Consensus 36 ~~f~l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~-~~~g~~vlvl~PtraLa~Q~~~~l~~~~~---~~~v 111 (997)
T 4a4z_A 36 WPFELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMA-HRNMTKTIYTSPIKALSNQKFRDFKETFD---DVNI 111 (997)
T ss_dssp CSSCCCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHH-HHTTCEEEEEESCGGGHHHHHHHHHTTC-----CCE
T ss_pred CCCCCCHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHH-HHCCCEEEEEECCHHHHHHHHHHHHHHCC---CCEE
T ss_conf 8999999999999999849989999799985899999999999-83598599995879999999999999769---9839
Q ss_pred EEEEEEEECCCCCCCEEEECHHHHHHHHHCCC-CCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCC-
Q ss_conf 78983210379981099972288899880299-9998317998188867878008999999999614994499981357-
Q 001722 400 GYAIRFEDVTGPSTLIKYMTDGVLLRETLKDS-DLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTSATL- 477 (1020)
Q Consensus 400 Gy~ir~e~~~s~~t~I~~~T~g~LLr~l~~d~-~L~~~s~IIIDEaHERs~~tD~Ll~lLk~il~~r~~lkiIlmSATl- 477 (1020)
+.. ..+....+.+.|+|+|+++|++.+.... .+.++++||||||| +..+.+....+...+....+++++|+||||+
T Consensus 112 ~~l-~G~~~~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH-~l~d~~~g~~~e~ii~~l~~~v~iIlLSAT~~ 189 (997)
T 4a4z_A 112 GLI-TGDVQINPDANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVH-YVNDQDRGVVWEEVIIMLPQHVKFILLSATVP 189 (997)
T ss_dssp EEE-CSSCEECTTSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTT-CCCTTCTTCCHHHHHHHSCTTCEEEEEECCCT
T ss_pred EEE-ECCCCCCCCCCEEEECHHHHHHHHHHCCHHHCCCCEEEEECCC-CCCCCCHHHHHHHHHHHCCCCCCEEEECCCCC
T ss_conf 999-6898667999989988999999998181120578899998954-66665448999999985466887899769989
Q ss_pred CHHHHHHHHC-----CCCEEEECCCCCCEEEEECCCC-------------CHHHH-------------------------
Q ss_conf 9787997738-----9895852685233015544799-------------04699-------------------------
Q 001722 478 NAQKFSDFFG-----SVPIFHIPGRTFPVNTLYSKTP-------------CEDYV------------------------- 514 (1020)
Q Consensus 478 d~~~f~~~f~-----~~pii~i~gr~~pV~i~y~~~~-------------~~dyl------------------------- 514 (1020)
+...|++|++ .+.++..+++..|+..++.... ...|.
T Consensus 190 n~~ef~~~l~~~~~~~~~vi~~~~r~~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 269 (997)
T 4a4z_A 190 NTYEFANWIGRTKQKNIYVISTPKRPVPLEINIWAKKELIPVINQNSEFLEANFRKHKEILNGESAKGAPSKTDNGRGGS 269 (997)
T ss_dssp THHHHHHHHHHHHTCCEEEEECSSCSSCEEEEEEETTEEEEEECTTCCBCHHHHHHHHHHHC------------------
T ss_pred CHHHHHHHHHCCCCCCEEEEECCCCCCCCEEEEECCCCCHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
T ss_conf 76899999832358865998368887564688854875000004203566777999999863224334321000001222
Q ss_pred ---------------------------------------------------HHHHHHHHHHHHCCCCCCEEEECCCHHHH
Q ss_conf ---------------------------------------------------99999999985129999889990898899
Q 001722 515 ---------------------------------------------------EAAVKQAMTIHITSPPGDILIFMTGQDEI 543 (1020)
Q Consensus 515 ---------------------------------------------------~~ai~~vl~i~~~~~~G~ILVFl~g~~ei 543 (1020)
...+..++........+++|||++++.+|
T Consensus 270 ~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~l~~~~~~~~IVF~~sr~~~ 349 (997)
T 4a4z_A 270 TARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPEIVNYLRKRELLPMVVFVFSKKRC 349 (997)
T ss_dssp -----------------------------------------------CCCCTTHHHHHHHHHHHTTCCSEEEECSCHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCHHHH
T ss_conf 22344443212354333444445554444433444345665422122466666899999999847999789998988899
Q ss_pred HHHHHHHHHH----------HHHHHCCCCCC----------------CCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEE
Q ss_conf 9999999999----------99852024689----------------998189984499999999999988318990799
Q 001722 544 EAACFALKER----------MEQLISSTTRE----------------VPELLILPIYSQLPADLQAKIFEKAKEGTRKCI 597 (1020)
Q Consensus 544 e~~~~~L~~~----------l~~l~~~~~~~----------------~~~l~Il~lhs~L~~~~q~~I~~~f~~g~rkVI 597 (1020)
+.++..|.+. +.......... .....|.++||+|++.+|..+++.|..|.++||
T Consensus 350 e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~~~~R~~v~~~F~~G~~kVL 429 (997)
T 4a4z_A 350 EEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKELIEILFSKGFIKVL 429 (997)
T ss_dssp HHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCCSEE
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCHHHHCCHHHHHHHHHHHCCEEEECCCCCHHHHHHHHHHHHCCCCCEE
T ss_conf 99999984579997788999999999999744654421124787888863684662499999999999999977998399
Q ss_pred EECCHHHCCCCCCCEEEEEECCCCCCEECCCCCCCCCCCCCCCCHHHHHHHHCCCCCCC---CCEEEECCCH-----HHH
Q ss_conf 95430000478898659997598652001687896433201159987999832039999---9789990394-----667
Q 001722 598 VATNIAETSLTVDGIFYVIDTGYGKMKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTG---PGTCYRLYTE-----SAY 669 (1020)
Q Consensus 598 VATniaEtGItIp~V~~VID~G~~k~~~yd~~~g~~~L~~~piS~asa~QRaGRAGR~g---~G~cyrLyt~-----~~~ 669 (1020)
|||+++++|||+|+ ++||..+..+ ||.. ...|+|..+|.||+|||||.| .|.||.++.. ..+
T Consensus 430 vAT~~~a~GIDiP~-~~VVi~~~~k---~dg~------~~~~~s~~~y~Qr~GRAGR~G~~~~G~vi~l~~~~~~~~~~~ 499 (997)
T 4a4z_A 430 FATETFAMGLNLPT-RTVIFSSIRK---HDGN------GLRELTPGEFTQMAGRAGRRGLDSTGTVIVMAYNSPLSIATF 499 (997)
T ss_dssp EECTHHHHSCCCCC-SEEEESCSEE---EETT------EEEECCHHHHHHHHGGGCCTTTCSSEEEEEECCSSCCCHHHH
T ss_pred EECHHHHCCCCCCC-CEEEEECCCC---CCCC------CCCCCCHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCHHHHH
T ss_conf 97208667798888-6699940532---4676------677799999827741335688776359999648885239999
Q ss_pred HHCCCCCCCCHHCCC------CHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 310699995100025------436899997522658666777899997434999999998
Q 001722 670 LNEMLPSPVPEIQRT------NLGNVVLLLKSLKIDNLLDFDFMDPPPQENILNSMYQLW 723 (1020)
Q Consensus 670 ~~~l~~~~~PEI~r~------~L~~~vL~lk~lgi~~l~~f~~~dpP~~~~i~~al~~L~ 723 (1020)
..+. ...|+.+++ |+...+|++..+++.+++.+.|.+.+....+......|.
T Consensus 500 -~~~i-~~~~~~l~s~~~~~ynm~l~ll~~~~~~~~~~l~~sf~~~~~~~~~~~~~~~l~ 557 (997)
T 4a4z_A 500 -KEVT-MGVPTRLQSQFRLTYNMILNLLRIEALRVEEMIKYSFSENAKETLQPEHEKQIK 557 (997)
T ss_dssp -HHHH-HSCCCCCCCCCCCCHHHHHHHHHHCTTHHHHHHHTSHHHHHHHHHHHHHHHHHH
T ss_pred -HHHH-CCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf -9996-089961201236506778878765104699999998999999751699999999
No 9
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=1.00 E-value=1 Score=347.67 Aligned_cols=455 Identities=16% Similarity=0.155 Sum_probs=304.4
Q ss_pred CHHHHHHHHHHHH-HCCEEEEEECCCCCHHHHHHHHHHHHCCC----------CCCEEEEECCCHHHHHHHHHHHHHHHC
Q ss_conf 6799999999999-09929999028996478999999971225----------998999983518999999999999840
Q 001722 324 IFSVRDELLQVIR-ENQVVVVVGETGSGKTTQLTQYLLEDGYT----------TNGIVGCTQPRRVAAMSVAKRVSEEMD 392 (1020)
Q Consensus 324 i~~~q~eil~~i~-~~q~vII~gpTGSGKTtqipq~Lle~~~~----------~~~~Ii~tqPrRvlA~sva~rva~e~~ 392 (1020)
..++|.++++.+. ++++++|+||||||||+.+..+++..... .+.+++++.|.|++|.+++..+.+.++
T Consensus 80 ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~~~~~ 159 (1724)
T 4f92_B 80 LNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFGKRLA 159 (1724)
T ss_dssp CCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHH
T ss_conf 99999999999975899399996881469999999999999862343444457998899989979999999999997775
Q ss_pred CCCCCEEEEEEEEEECCC----CCCCEEEECHHHHHHHHHCC---CCCCCCCEEEEECCC----CCCCCCCHHHHHHHHH
Q ss_conf 202897778983210379----98109997228889988029---999983179981888----6787800899999999
Q 001722 393 TELGDKVGYAIRFEDVTG----PSTLIKYMTDGVLLRETLKD---SDLDKYRVIVMDEAH----ERSLSTDVLFGILKKV 461 (1020)
Q Consensus 393 ~~lG~~VGy~ir~e~~~s----~~t~I~~~T~g~LLr~l~~d---~~L~~~s~IIIDEaH----ERs~~tD~Ll~lLk~i 461 (1020)
.+|..|+... ++.... ..+.|+++||+.+-..+... ..+.++++|||||+| +|+...+.++..+...
T Consensus 160 -~~gi~V~~~t-Gd~~~~~~~~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l~d~RG~~lE~~l~rl~~~ 237 (1724)
T 4f92_B 160 -TYGITVAELT-GDHQLCKEEISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLHDDRGPVLEALVARAIRN 237 (1724)
T ss_dssp -TTTCCEEECC-SSCSSCCTTGGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGGGSTTHHHHHHHHHHHHHH
T ss_pred -HCCCEEEEEE-CCCCCCCCCCCCCCEEEECHHHHHHHHCCCCCCHHHCCCCEEEEECCHHCCCCCHHHHHHHHHHHHHH
T ss_conf -4798899997-99888714358999999887999999758853044547588999555442995679999999999999
Q ss_pred -HHHCCCCEEEEEECCC-CHHHHHHHHCCCC---EEEEC--CCCCCEEEEECCCCCHHHH--HHHHHHHHH-H-HHCCCC
Q ss_conf -9614994499981357-9787997738989---58526--8523301554479904699--999999999-8-512999
Q 001722 462 -VARRRDFKLIVTSATL-NAQKFSDFFGSVP---IFHIP--GRTFPVNTLYSKTPCEDYV--EAAVKQAMT-I-HITSPP 530 (1020)
Q Consensus 462 -l~~r~~lkiIlmSATl-d~~~f~~~f~~~p---ii~i~--gr~~pV~i~y~~~~~~dyl--~~ai~~vl~-i-~~~~~~ 530 (1020)
....+++++|+||||+ |++.+++|++..+ ++.+. .|+.|++.++......... ...+...+. . ......
T Consensus 238 ~~~~~~~~riI~LSATl~N~~dvA~wL~~~~~~~~~~~~~~~RPvpL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 317 (1724)
T 4f92_B 238 IEMTQEDVRLIGLSATLPNYEDVATFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGK 317 (1724)
T ss_dssp HHHHTCCCEEEEEECSCTTHHHHHHHTTCCHHHHEEECCGGGCSSCEEEECCEECCCCHHHHHHHHHHHHHHHHTTCCSS
T ss_pred HHHCCCCCCEEEEECCCCCHHHHHHHHCCCCCCCEEEECCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 97379998099995456999999998678888886997999766731799965687541456677889999999997569
Q ss_pred CCEEEECCCHHHHHHHHHHHHHHHHHHHCCCC------------------------CCCCCEEEEEECCCCCHHHHHHHH
Q ss_conf 98899908988999999999999998520246------------------------899981899844999999999999
Q 001722 531 GDILIFMTGQDEIEAACFALKERMEQLISSTT------------------------REVPELLILPIYSQLPADLQAKIF 586 (1020)
Q Consensus 531 G~ILVFl~g~~eie~~~~~L~~~l~~l~~~~~------------------------~~~~~l~Il~lhs~L~~~~q~~I~ 586 (1020)
+++|||++++.+++.++..|.+.+........ .......|..|||+|+.++|..|+
T Consensus 318 ~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHagL~~~~R~~vE 397 (1724)
T 4f92_B 318 NQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTRVDRTLVE 397 (1724)
T ss_dssp CCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECSSSCTHHHHHHH
T ss_pred CCEEEECCCHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHCCEEEECCCCCHHHHHHHH
T ss_conf 96899878889999999999998764552122133330578887766402444889998645778875999999999999
Q ss_pred HHHCCCCEEEEEECCHHHCCCCCCCEEEEEECCCCCCEECCCCCCCCCCCCCCCCHHHHHHHHCCCCCCC---CCEEEEC
Q ss_conf 8831899079995430000478898659997598652001687896433201159987999832039999---9789990
Q 001722 587 EKAKEGTRKCIVATNIAETSLTVDGIFYVIDTGYGKMKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTG---PGTCYRL 663 (1020)
Q Consensus 587 ~~f~~g~rkVIVATniaEtGItIp~V~~VID~G~~k~~~yd~~~g~~~L~~~piS~asa~QRaGRAGR~g---~G~cyrL 663 (1020)
+.|..|.++|||||++++.|||+|++++||. ...+||+..|.. .|+|.+++.||+|||||.| .|.++.+
T Consensus 398 ~~F~~G~i~vlvaTsTLa~GVNlPa~~vVI~----~~~~~~~~~~~~----~~ls~~~~~Qm~GRAGR~g~d~~G~~ii~ 469 (1724)
T 4f92_B 398 DLFADKHIQVLVSTATLAWGVNLPAHTVIIK----GTQVYSPEKGRW----TELGALDILQMLGRAGRPQYDTKGEGILI 469 (1724)
T ss_dssp HHHHTTCCCEEEECHHHHHHSCCCBSEEEEE----CCEEEETTTTEE----EECCHHHHHHHHTTBSCTTTCSCEEEEEE
T ss_pred HHHHCCCCEEEEECCHHHHHCCCCCCEEEEE----CCEEECCCCCCC----CCCCHHHHHHHHHHCCCCCCCCCCEEEEE
T ss_conf 9987799749998426671388887069982----887704767875----63899999876401268888876479998
Q ss_pred CCHHHH--HHCCCCCCCC-H-HCCCCHHHHHHHHHHCCC-CCC----------------------CCC--------CCCC
Q ss_conf 394667--3106999951-0-002543689999752265-866----------------------677--------7899
Q 001722 664 YTESAY--LNEMLPSPVP-E-IQRTNLGNVVLLLKSLKI-DNL----------------------LDF--------DFMD 708 (1020)
Q Consensus 664 yt~~~~--~~~l~~~~~P-E-I~r~~L~~~vL~lk~lgi-~~l----------------------~~f--------~~~d 708 (1020)
.+..+. ...+.....| | ....++...++...++|. .+. ..+ +.++
T Consensus 470 ~~~~~~~~~~~ll~~~~pieS~l~~~l~d~L~aeI~~g~i~~~~~a~~~l~~T~~~~r~~~~p~~y~~~~~~~~~d~~l~ 549 (1724)
T 4f92_B 470 TSHGELQYYLSLLNQQLPIESQMVSKLPDMLNAEIVLGNVQNAKDAVNWLGYAYLYIRMLRSPTLYGISHDDLKGDPLLD 549 (1724)
T ss_dssp EESTTCCHHHHHTTTCSCCCCCTTTTHHHHHHHHHHHTSCCBHHHHHHHHHHSHHHHHHHHCTTTTTCCHHHHHHCTTCH
T ss_pred ECCHHHHHHHHHHCCCCCCHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHCHHHHCCCCCCCCCCHHHH
T ss_conf 35025999999974998510203310788999999870247899999999643788775327465436710012363789
Q ss_pred CCCHHHHHHHHHHHHHHCCCCC---CC--CCCHHHHHHHCCCCCHHHHHHHHHHHCCCCH-HHHHHHHHHHCC-CCCCCC
Q ss_conf 9974349999999988067557---89--7669888861299994889987543102857-999999997079-985568
Q 001722 709 PPPQENILNSMYQLWVLGALNN---VG--ALTDLGWKMVEFPLDPPLAKMLLMGEQLGCL-DEVLTIVSMLSV-PSVFFR 781 (1020)
Q Consensus 709 pP~~~~i~~al~~L~~lgaLd~---~g--~LT~lG~~ma~lPldp~lak~li~~~~~~c~-~e~l~Iva~Ls~-~~~f~~ 781 (1020)
..-.+.+..++..|...|.+.- .| ..|++|+.|+.+.++|...+.+.......+. .+++.++|+.+. .++..+
T Consensus 550 ~~~~~~i~~~~~~L~~~~li~~d~~~~~~~~T~lGr~~s~~yi~~~t~~~~~~~l~~~~~~~~ll~~is~s~ef~~i~~R 629 (1724)
T 4f92_B 550 QRRLDLVHTAALMLDKNNLVKYDKKTGNFQVTELGRIASHYYITNDTVQTYNQLLKPTLSEIELFRVFSLSSEFKNITVR 629 (1724)
T ss_dssp HHHHHHHHHHHHHHHHTTSEEECTTTCBEEECHHHHHHHHTTCCHHHHHHHHHHCCTTCCHHHHHHHHHTCGGGTTCCCC
T ss_pred HHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHCCCCCC
T ss_conf 99999999999999887990140677864344487999983689999999986358889999999997577521667707
Q ss_pred CCCHHHH
Q ss_conf 7104999
Q 001722 782 PKDRAEE 788 (1020)
Q Consensus 782 p~~~~~~ 788 (1020)
..++.+-
T Consensus 630 ~~E~~~l 636 (1724)
T 4f92_B 630 EEEKLEL 636 (1724)
T ss_dssp GGGHHHH
T ss_pred HHHHHHH
T ss_conf 7899999
No 10
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=1.00 E-value=1 Score=340.17 Aligned_cols=306 Identities=20% Similarity=0.219 Sum_probs=233.1
Q ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHC
Q ss_conf 99999970799679999999999909929999028996478999999971225998999983518999999999999840
Q 001722 313 KTLAEQRQYLPIFSVRDELLQVIRENQVVVVVGETGSGKTTQLTQYLLEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMD 392 (1020)
Q Consensus 313 ~~l~~~R~~LPi~~~q~eil~~i~~~q~vII~gpTGSGKTtqipq~Lle~~~~~~~~Ii~tqPrRvlA~sva~rva~e~~ 392 (1020)
.+.+++|..||++.+|++++..+.++++++++|+||||||+++++++++. +.+++|++|+|++|.|+++++++.++
T Consensus 207 ~e~l~~r~~lP~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~~----g~~vLVl~PTReLA~Qia~~l~~~~g 282 (666)
T 3o8b_A 207 VESMETTMRSPVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQ----GYKVLVLNPSVAATLGFGAYMSKAHG 282 (666)
T ss_dssp HHHHHHHHHSCSCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHHT----TCCEEEEESCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHC----CCEEEEECCHHHHHHHHHHHHHHHHC
T ss_conf 67654302597599999999999769849999189514999999999978----99699996549999999999999859
Q ss_pred CCCCCEEEEEEEEEECCCCCCCEEEECHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf 20289777898321037998109997228889988029999983179981888678780089999999996149944999
Q 001722 393 TELGDKVGYAIRFEDVTGPSTLIKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIV 472 (1020)
Q Consensus 393 ~~lG~~VGy~ir~e~~~s~~t~I~~~T~g~LLr~l~~d~~L~~~s~IIIDEaHERs~~tD~Ll~lLk~il~~r~~lkiIl 472 (1020)
..++..+|+.. .....+|+|+|+|.|+.. ....+.++++|||||||+++...+..+..+...+.......+++
T Consensus 283 ~~vg~~vG~~~-----~~~~~~IlV~TPGrLl~~--~~l~l~~l~~lVlDEAH~l~~~~~~~l~~Il~~l~~~~~~llil 355 (666)
T 3o8b_A 283 IDPNIRTGVRT-----ITTGAPVTYSTYGKFLAD--GGCSGGAYDIIICDECHSTDSTTILGIGTVLDQAETAGARLVVL 355 (666)
T ss_dssp CCCEEECSSCE-----ECCCCSEEEEEHHHHHHT--TSCCTTSCSEEEETTTTCCSHHHHHHHHHHHHHTTTTTCSEEEE
T ss_pred CCEEEEECCEE-----CCCCCCEEEECCHHHHHC--CCCCCCCCCEEEECCCHHCCCCHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 97258988576-----158989999890788748--87454751589982623248467999999998624127726999
Q ss_pred EECCCCHHHHHHHHCCCCEEEECCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHH
Q ss_conf 81357978799773898958526852330155447990469999999999985129999889990898899999999999
Q 001722 473 TSATLNAQKFSDFFGSVPIFHIPGRTFPVNTLYSKTPCEDYVEAAVKQAMTIHITSPPGDILIFMTGQDEIEAACFALKE 552 (1020)
Q Consensus 473 mSATld~~~f~~~f~~~pii~i~gr~~pV~i~y~~~~~~dyl~~ai~~vl~i~~~~~~G~ILVFl~g~~eie~~~~~L~~ 552 (1020)
||||++.. +. ...|. ..++...+.. ....+ ...+. ......+++|||++++++++.+++.|.+
T Consensus 356 ~SAT~~~~-i~---~~~p~------i~~v~~~~~~-~i~~~-~~~~~-----l~~~~~~~vLVFv~Tr~~ae~la~~L~~ 418 (666)
T 3o8b_A 356 ATATPPGS-VT---VPHPN------IEEVALSNTG-EIPFY-GKAIP-----IEAIRGGRHLIFCHSKKKCDELAAKLSG 418 (666)
T ss_dssp EESSCTTC-CC---CCCTT------EEEEECBSCS-SEEET-TEEEC-----GGGSSSSEEEEECSCHHHHHHHHHHHHT
T ss_pred ECCCCCCC-CC---CCCCC------EEEEEECCCC-HHHHH-HHHHH-----HHHCCCCCEEEEECCHHHHHHHHHHHHH
T ss_conf 87889844-45---67761------4777502320-46788-76434-----5540699589996888999999999986
Q ss_pred HHHHHHCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCHHHCCCCCCCEEEEEECCCCCCEE----CCC
Q ss_conf 9998520246899981899844999999999999883189907999543000047889865999759865200----168
Q 001722 553 RMEQLISSTTREVPELLILPIYSQLPADLQAKIFEKAKEGTRKCIVATNIAETSLTVDGIFYVIDTGYGKMKV----YNP 628 (1020)
Q Consensus 553 ~l~~l~~~~~~~~~~l~Il~lhs~L~~~~q~~I~~~f~~g~rkVIVATniaEtGItIp~V~~VID~G~~k~~~----yd~ 628 (1020)
.++.+.++||+|+.++ +..+..+|||||+++++||||| |++|||+|+.+..+ |||
T Consensus 419 -------------~g~~v~~lHG~l~q~e-------r~~~~~~VLVATdVaerGIDId-V~~VI~~Gl~~~~ViNyDydP 477 (666)
T 3o8b_A 419 -------------LGINAVAYYRGLDVSV-------IPTIGDVVVVATDALMTGYTGD-FDSVIDCNTCVTQTVDFSLDP 477 (666)
T ss_dssp -------------TTCCEEEECTTSCGGG-------SCSSSCEEEEECTTHHHHCCCC-BSEEEECCEEEEEEEECCCSS
T ss_pred -------------CCCCEEEECCCCCHHH-------HHHCCCCEEEECCHHHCCCCCC-CCEEEECCCCCCCCCCCCCCC
T ss_conf -------------7993898608788999-------9728984999897477267789-758996676432211235553
Q ss_pred CCCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEEECCCHHHH
Q ss_conf 78964332011599879998320399999789990394667
Q 001722 629 KMGMDALQVFPVSRAAADQRAGRAGRTGPGTCYRLYTESAY 669 (1020)
Q Consensus 629 ~~g~~~L~~~piS~asa~QRaGRAGR~g~G~cyrLyt~~~~ 669 (1020)
..++..+ ..|.|.++|.||+|||||..+|. |.||++.+.
T Consensus 478 ~~gl~~~-~~P~s~~syiQRiGRtGRg~~G~-i~lvt~~e~ 516 (666)
T 3o8b_A 478 TFTIETT-TVPQDAVSRSQRRGRTGRGRRGI-YRFVTPGER 516 (666)
T ss_dssp SCEEEEE-EEECBHHHHHHHHTTBCSSSCEE-EEESCCCCB
T ss_pred CCCCCCC-CCCCCHHHHHHHHCCCCCCCCCE-EEEEECCHH
T ss_conf 2232235-57699999999863578899988-999823131
Done!