Query 001723
Match_columns 1020
No_of_seqs 554 out of 2954
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 07:47:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001723.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001723hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2039 Transcriptional coacti 100.0 3.6E-88 7.7E-93 831.2 46.4 853 10-1009 3-875 (875)
2 smart00318 SNc Staphylococcal 99.9 9.1E-24 2E-28 209.8 18.6 131 11-150 2-137 (138)
3 PRK06518 hypothetical protein; 99.9 1.8E-23 3.8E-28 213.5 17.9 138 5-152 17-157 (177)
4 smart00318 SNc Staphylococcal 99.9 4.1E-23 8.8E-28 205.1 18.3 138 186-364 1-138 (138)
5 cd00175 SNc Staphylococcal nuc 99.9 3.1E-23 6.8E-28 203.4 16.5 123 18-150 1-128 (129)
6 cd00175 SNc Staphylococcal nuc 99.9 3.1E-22 6.7E-27 196.4 16.3 129 194-364 1-129 (129)
7 KOG2039 Transcriptional coacti 99.9 4.8E-22 1E-26 246.5 21.1 516 379-997 4-626 (875)
8 PF00567 TUDOR: Tudor domain; 99.8 4E-20 8.7E-25 177.7 13.2 119 760-885 2-121 (121)
9 COG1525 Micrococcal nuclease ( 99.8 2.2E-19 4.7E-24 188.5 15.1 128 12-152 42-172 (192)
10 PF00565 SNase: Staphylococcal 99.8 1.2E-19 2.6E-24 172.0 10.6 107 42-151 1-108 (108)
11 PRK06518 hypothetical protein; 99.8 4.8E-18 1E-22 173.7 17.0 136 183-364 19-156 (177)
12 PF00565 SNase: Staphylococcal 99.7 6.3E-18 1.4E-22 160.2 10.1 106 213-364 1-108 (108)
13 COG1525 Micrococcal nuclease ( 99.7 7E-16 1.5E-20 162.0 14.1 129 188-365 42-172 (192)
14 smart00333 TUDOR Tudor domain. 99.3 7.1E-12 1.5E-16 105.1 6.4 56 809-871 2-57 (57)
15 cd04508 TUDOR Tudor domains ar 99.3 7.5E-12 1.6E-16 101.1 5.5 48 813-866 1-48 (48)
16 KOG2279 Kinase anchor protein 99.0 4.2E-10 9.2E-15 128.2 5.2 190 758-964 401-600 (608)
17 smart00743 Agenet Tudor-like d 98.4 3.9E-07 8.4E-12 77.5 6.2 55 810-870 3-59 (61)
18 PF06003 SMN: Survival motor n 98.0 4.7E-06 1E-10 91.6 5.4 58 808-870 67-124 (264)
19 KOG2279 Kinase anchor protein 96.4 0.0011 2.4E-08 77.0 0.9 186 759-964 313-502 (608)
20 PF09465 LBR_tudor: Lamin-B re 96.2 0.017 3.8E-07 47.4 6.6 52 808-865 4-55 (55)
21 PF05641 Agenet: Agenet domain 94.6 0.061 1.3E-06 46.9 5.1 54 811-870 2-66 (68)
22 PF11717 Tudor-knot: RNA bindi 91.5 0.41 8.9E-06 39.9 5.3 51 811-865 2-54 (55)
23 KOG4327 mRNA splicing protein 91.3 0.13 2.9E-06 52.8 2.5 54 808-866 66-119 (218)
24 PF15057 DUF4537: Domain of un 90.4 0.62 1.3E-05 45.7 6.1 105 760-871 11-116 (124)
25 KOG3026 Splicing factor SPF30 89.4 0.49 1.1E-05 50.2 4.7 56 809-869 90-145 (262)
26 PF15057 DUF4537: Domain of un 88.5 1.1 2.4E-05 43.9 6.3 51 813-870 1-51 (124)
27 KOG3038 Histone acetyltransfer 85.4 2.8 6E-05 45.4 7.7 90 759-853 143-238 (264)
28 PF07039 DUF1325: SGF29 tudor- 63.6 11 0.00025 37.2 4.8 87 761-857 17-115 (130)
29 cd05162 PWWP The PWWP domain, 55.6 18 0.00039 32.8 4.4 62 811-873 2-67 (87)
30 PLN00104 MYST -like histone ac 50.0 27 0.00059 41.4 5.7 58 808-865 52-112 (450)
31 cd05834 HDGF_related The PWWP 47.5 25 0.00054 32.0 3.9 60 810-872 3-62 (83)
32 smart00293 PWWP domain with co 47.5 33 0.00072 29.3 4.5 56 811-867 2-62 (63)
33 PF09038 53-BP1_Tudor: Tumour 41.9 56 0.0012 31.8 5.4 50 811-867 4-53 (122)
34 cd05841 BS69_related The PWWP 41.6 37 0.00081 30.9 4.0 55 809-871 6-61 (83)
35 COG2134 Cdh CDP-diacylglycerol 29.3 72 0.0016 33.8 4.3 51 42-95 81-136 (252)
36 PF07039 DUF1325: SGF29 tudor- 26.4 2E+02 0.0043 28.5 6.7 54 811-869 1-60 (130)
37 KOG3038 Histone acetyltransfer 23.8 3.1E+02 0.0068 30.2 8.0 57 807-869 125-186 (264)
38 PF02736 Myosin_N: Myosin N-te 23.8 1.9E+02 0.0042 22.6 4.9 39 815-862 3-41 (42)
39 PF00855 PWWP: PWWP domain; I 23.4 1.5E+02 0.0032 26.5 4.8 57 811-868 2-59 (86)
40 KOG2185 Predicted RNA-processi 23.3 59 0.0013 37.7 2.6 52 809-868 180-231 (486)
41 PF11302 DUF3104: Protein of u 23.1 2.3E+02 0.0049 25.4 5.6 59 809-867 5-70 (75)
42 cd06080 MUM1_like Mutated mela 22.0 1.7E+02 0.0038 26.5 4.8 55 811-871 2-57 (80)
43 PRK07899 rpsA 30S ribosomal pr 21.0 1.6E+03 0.034 27.5 15.8 134 758-927 80-225 (486)
44 TIGR00008 infA translation ini 20.9 1.8E+02 0.0038 25.7 4.5 31 618-649 7-37 (68)
No 1
>KOG2039 consensus Transcriptional coactivator p100 [Transcription]
Probab=100.00 E-value=3.6e-88 Score=831.17 Aligned_cols=853 Identities=44% Similarity=0.715 Sum_probs=733.6
Q ss_pred CeEEEEEeEEccCCeEEEeeCCCCCCCCCCeeEEEEEeccCCCCCCCC-CCCchhHHHHHHHHHHhcCCCeEEEEEceec
Q 001723 10 GWYRARVKAVPSGDSLVITALSNPNPGPPREKTLTLSSIITPRLARRG-GLDEPFAWDSREFLRKLCIGKEVTFRVDYAV 88 (1020)
Q Consensus 10 ~~~~~~V~~V~dGDTi~v~~~~~~~~g~~~~~~vrL~gIdaPe~~~~~-~~~ep~a~eAre~Lr~ll~Gk~V~~~~~~~~ 88 (1020)
....|.|++|.|||.+.+++. +..+++++.+++|+.+.+|++.+++ +-++||+|++++|+|++++||.+.|..++-.
T Consensus 3 ~~~~~~v~~v~s~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~d~p~~~~~~~~~~~~~~~k~~~v~~~~~~ 80 (875)
T KOG2039|consen 3 QRLVGYVKAVLSGDAFVIRGS--PRAGPPPEFQINLSNVKAPNEARRDKGVDEPFAWESREFLRKSEIGKEVAVTRDQMS 80 (875)
T ss_pred eEEeeeEEEEeccCccEEEcc--cccCCCCCceEEEeecCCccccccCCCCCCCcChhhHHHHHHHhccceeeeEEeeec
Confidence 345789999999999999985 5678899999999999999999874 2379999999999999999999999999745
Q ss_pred CCCCcEEEEEEeCCccHHHHHHHcCCEEEEEcCCcCCCCchhHHHHHHHHHHHHHcCCCccCCCCCCcccccccCCCCcC
Q 001723 89 PNIGREFGTVILGDKNVAMLVVSEGWAKVKEQGSQKGEASPFLAELLRLEEQAKLQGLGRWSKVPGAAEASIRNLPPSAI 168 (1020)
Q Consensus 89 d~~gR~~g~v~~~g~~v~~~lv~~GlA~v~~~~~~~~~~~~~~~~l~~aE~~Ar~~k~GiWs~~~~~~~~~~r~~~~~~~ 168 (1020)
..++|.+|.++++++++++.|+..||+.+++... .+.+|...+...|.+|++.++|+|+.. ....+++.++.
T Consensus 81 ~~~~~e~~~~~~~~~~~a~~lv~~g~~~~~~~~~---~~~~~~~~l~~~~~~~k~~~~g~w~~~----~~~~~~~~~~~- 152 (875)
T KOG2039|consen 81 ANNGREVGFIYLGDENSAESLVKEGLLDVRDEGV---RNSSYFKTLDEVEVQAKQSGRGIWSKL----DHFIRNLKDSA- 152 (875)
T ss_pred cccccccceeecCcchhHHHHHhccCCccccccc---ccchhhhhhhhhhhhhhhhcccccccc----ccceeeccccc-
Confidence 5679999999999999999999999999888763 337888899999999999999999933 34468888763
Q ss_pred CCCchhhHHHHhhhcCCCcccEEEEEeccCC-EEEEEEcCCceEEEEEEeeecCCCCCCCCCccccCcccccCCCccccc
Q 001723 169 GDSSNFNAMALLDANKGRPMQGIVEQARDGS-TLRVYLLPEFQFVQVFVAGIQAPAVARRPAAIVDTDTEETNGDVSAAE 247 (1020)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~Ve~V~dG~-t~~v~~~~~~~~~~v~l~Gi~~P~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (1020)
.+++.|+..+.++++.|+||+|++|+ +.||.+.+.+..++++|+|+.||.+..+. ++.
T Consensus 153 -----~~p~~~~~~~~~~~~~~~ve~v~~~~~~~rv~~~p~~~~~~v~lSg~~~P~~~~~s-----------~~~----- 211 (875)
T KOG2039|consen 153 -----LNPAELVDAVGGKPVNAIVEHVRDGEDTVRVLLRPELKYVTVRLSGKRCPSQGPPS-----------DGS----- 211 (875)
T ss_pred -----cccHHHHHhcCCceeeeehhhccChhhhhhHHhccccceeEEecccccCCCCCCCC-----------CCC-----
Confidence 56788999888999999999999999 68888888788899999999999987632 110
Q ss_pred cccchhhHHHHhhhcccCCCCCCCchhHHHHHHHHHHHccCceEEEEEeeecCCCCEEEEEEecCCCChhHHHHHHHhcC
Q 001723 248 AVAPLNSAQRLAASTASAGQQSTDEPFALDAKYFTEMRVLNREVRIVLEGVDKFKNLIGSVFYPDGETAKDLAMELVENG 327 (1020)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~ep~~~eAk~f~~~~ll~r~V~v~~~~~d~~g~~~~~v~~~~g~~~~di~~~Ll~~G 327 (1020)
....+||+.+|+.|++.++++|.|.|.+++...+-.++|+|++++|+ |++.|+.+|
T Consensus 212 --------------------~~~~~~~~~~a~~f~~~~~~~r~~~i~~~~~~~~~~~~g~v~~~~~~----i~~~~~~~~ 267 (875)
T KOG2039|consen 212 --------------------PSVPDPFADEAKLFSEDRLLQRAVAIPLESEENYVFFVGDVLYPDGN----IALELLSEG 267 (875)
T ss_pred --------------------CCCCCcHHHHHHHhcccchhhhceeeeeccccccccccccccccccc----eeeehhccc
Confidence 12368999999999999999999999999999887899999999995 999999999
Q ss_pred cEEEEecccccchHHHHHHHHHHHHHHHHhcccc-ccCCCCCCCCcccccccceeeEEEEEeeCcEEEEEeCCCCCCCcc
Q 001723 328 LAKYIEWSANMMEEDAKRRLKAADLQAKKTRLRM-WTNYVPPQSNSKAIHDQNFTGKVVEVVSGDCIIVADDSIPYGNAL 406 (1020)
Q Consensus 328 lA~~~~~~~~~~~~~~~~~l~~ae~~Ak~~~~g~-W~~~~~~~~~~~~~~~~~~~~~V~~v~~gd~i~v~~~~~~~~~~~ 406 (1020)
++++++|+.+.++.+....++.+|..++..+.++ |++|.++.+.++...++.+.+.|++++.+||+.+..++ |.
T Consensus 268 ~~k~v~~s~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~q~~~s~~~~~~~~~~~~~v~e~~~~d~~~~~~~s---g~-- 342 (875)
T KOG2039|consen 268 LAKCVDWSKNEIPCGAAKKLRAAERLAKEHRLRVLWKNYQVPLSTSESIDDKGFSGKVVEVLVSDCVLVALDS---GS-- 342 (875)
T ss_pred hHHHHHhhhhccCchhhhhhhHHhhccchhHHHHHHhccccccchheeeccccccceeeeeeccCceEEecCC---CC--
Confidence 9999999999988888778999999999999999 99999998887765678899999999999999999865 22
Q ss_pred ceeEEEeecccCCCCCCCCCCCc--cchhHHHHHHHHHhhcCCcEEEEEEeeeeeccccccccccCCCCCCCCCCCCCCc
Q 001723 407 AERRVNLSSIRCPKIGNPRKDEK--PAAYAREAREFLRTRLIGRQVNVQMEYSRKVVVEAAPVAAGAKGPAGTKGPAGTK 484 (1020)
Q Consensus 407 ~e~~v~ls~i~~p~~~~~~~~~~--~~~~~~eare~lr~~~igk~v~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 484 (1020)
+.++.+++|+.|+.+++.+..+ .-||+++|++|||+++||++|.+.++|.++... .
T Consensus 343 -~~~~~~~~i~~pr~~~~~~~~~p~~~~~q~~a~~~~~~~~i~~~v~~~~~~~~~~~~----------------~----- 400 (875)
T KOG2039|consen 343 -ENKLFLSSIRLPRAGEPGRSLKPYISPVQLVAREFLRKKLIGKRVILQMDVIRPRRE----------------N----- 400 (875)
T ss_pred -ceEEEeeeccCccccccccccCCccccHHHHhhhhhhhhccCceeeEeeeccccccc----------------c-----
Confidence 7899999999999554333334 489999999999999999999999999876420 0
Q ss_pred cccccCCCCCCCccccccceeeeeeeEEecCCCCCCCCCchhhhccccCCCCCCcchhHHHHhcccceeeecC-Cccccc
Q 001723 485 GQAAAKGPAGEESVGATETRIIDFGSIFLLSPIKGEGDDASAVAQSNAAGQPAGVNVAELVVSRGLGNVINHR-DFEERS 563 (1020)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~nv~~~lv~~G~a~v~~~~-~~~~~s 563 (1020)
+++ ..+.+.+ ++|+|+++.++.+|++++++|| +++.++
T Consensus 401 ----------------~~~---~~c~~~~----------------------~~~~~~a~~~~~kg~~~~v~~~~~~~~~s 439 (875)
T KOG2039|consen 401 ----------------VPT---KVCALPL----------------------GGGKNVAELLVKKGLATVVRKRQDDEQRS 439 (875)
T ss_pred ----------------ccc---ccccccC----------------------CCcceeeEEEecccchhhhhhHhhhhhhc
Confidence 000 1111111 2479999999999999999999 567889
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCCCCCCceeeeeCCCccccchh-ccccccccCCccCEEEEEEecCCEEEEEecCCceeE
Q 001723 564 NYYDALLAAEARAKAGKKGCYSSKEPPVMHIQDLTMAPVKKAR-DFLPFLQRSRRIPAVVEYVLSGHRFKVLIPKETCSI 642 (1020)
Q Consensus 564 ~~y~~L~~ae~~A~~~~~G~~~~~~~~~~~~~d~~~~~~~~~k-~~l~~~~~~~~l~~vVe~V~~G~~~~v~lp~~~~~i 642 (1020)
..||.|+.+|..|..+++|||+.+..+.+.+.+++. ...+.+ .|+++++++..+..+|+++++|+++++++|++.|.+
T Consensus 440 ~~~d~ll~~E~~~~~~~~~~~s~~~~~~~~~~~~~~-~i~~n~~~~~~~~~~~~~~~~~v~~~~~gs~~~~~~pk~~~~~ 518 (875)
T KOG2039|consen 440 SHYDLLLVAEAIAIKGKKGCHSKKLDPTLRITDLTV-DIVRNKVQFLPSLDRGNRVEAIVEAVISGSRLRLYIPKETCYC 518 (875)
T ss_pred chhhhhhcchHHHHhhhhhhcccCCCcceeechhhh-hhhcCcEEeehhhccccceeeeeeeeeccccceeccCCcceeE
Confidence 999999999999999999999987776777888875 333444 899999999999999999999999999999999999
Q ss_pred EEEEecccCCC-------CCCcChHHHHHHHHHHhcCceEEEEEEEECCCCcEEEEEEeC-CccHHHHHHHcCCEEEeee
Q 001723 643 AFSFSGVRCPG-------RNERYSNEALLLMRQKILQRDVEIEVETVDRTGTFLGSLWES-RTNVAVILLEAGLAKLQTS 714 (1020)
Q Consensus 643 ~~~LaGI~~P~-------~~e~w~~EA~~flk~~ll~R~V~v~V~~~Dk~G~~~g~L~~~-~~nIa~~Lv~~GlA~~~~~ 714 (1020)
+|.++|++||+ .+++|+.+|..|++.+++++++++.+..+++.|++++.++.. +.++...++++||+.++
T Consensus 519 ~~~~~g~~~~~~~r~~~~~~e~~~~~~~~~~~~~vl~~~~~l~v~~~~~~~~~l~~~~~~~~~~~s~~~~e~~L~~~~-- 596 (875)
T KOG2039|consen 519 QFALAGIDCPSGARNDVQEGEPFSEEAIEFTRSLVLQREVELEVEITDKNGNFLGSLYEDSKTNLSLKLLEQGLAPEH-- 596 (875)
T ss_pred EEeeccccCcccccccccccCCccHHHHHHhhhheeccceEEEEeeeccCccccccccccccccchhhhhhhhcCccc--
Confidence 99999999996 488999999999999999999999999999999999999887 88999999999999996
Q ss_pred cCCCCCCChHHHHHHHHHHH-hccccccccccccccccC--CCcccCCCccEEEEEEEEEecCCeEEEEEcCc-hhHHHH
Q 001723 715 FGSDRIPDSHLLEQAEKSAK-SQKLKIWENYVEGEEVSN--GAAVEGKQKEVLKVVVTEILGGGKFYVQQVGD-QKVASV 790 (1020)
Q Consensus 715 ~s~~~~~~~~~L~~AE~~Ak-~~k~glW~~~~~~~~~~~--~~~~~~~~~~~~~V~Vt~V~sp~~FyvQ~~~~-~~L~~L 790 (1020)
+..++......|..++..|+ ..+.++|..+.++..+.. ..........+..+.++.+..+..||+|..+. ..+++|
T Consensus 597 ~~~e~~~~~~~~~s~~~~ak~~~k~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~i~p~~~F~~q~~~~~~~i~~~ 676 (875)
T KOG2039|consen 597 FAAERSSEYPPLESAELPAKLEQKLKIWLNYVEPVVEEVVLCLEKDERDLNTLKVVVTEITPGKGFYVQSISDGSKITKI 676 (875)
T ss_pred hhhhhhhhccchhhhhhccccchhcceeecccccchhhheecccccccccccceeeEeeecCCCcceeecccchHHHHHH
Confidence 66666666677888898999 999999999887632211 11111233456777888887779999999984 789999
Q ss_pred HHHHHHHHhcCCCCCCCCCCcCCCeEEEEEcCCCcEEEEEEEeeccccccccCCEEEEEEEecCCceeecCCCcccCCcc
Q 001723 791 QQQLASLNLQEAPVIGAFNPKKGEIVLAQFSADNSWNRAMIVNAPREKVESVNDKFEVFYIDYGNQELVPYNKLRPIDPS 870 (1020)
Q Consensus 791 ~~~L~~~~~~~~~~~~~~~p~~G~~c~A~fs~D~~WYRA~V~~~~~~~~~~~~~~v~V~fVDyGn~e~V~~~~Lr~Lp~~ 870 (1020)
|..|+.......+..+++.|+.|++|+|+|+.|++||||.|+.+. ....+.||||||||.+++|+.+|++||+.
T Consensus 677 ~~~~~~~~~~~~~~~~~~~p~~gd~c~A~y~~D~qwyRa~i~~V~------~~~~~~V~yiDygn~E~lp~~~l~~lp~~ 750 (875)
T KOG2039|consen 677 MTNLSQLVELKPPSSGSYTPKRGDLCVAKYSLDGQWYRALIVEVL------DPESMEVFYIDYGNIETLPFVRLKPLPPH 750 (875)
T ss_pred HHHHHHHhhhcccccCCCCCCCCCeeeeeeccccceeeeeeeeec------cCcceeEEEEecCcccccccccccCCChH
Confidence 999999888767777789999999999999999999999999984 22999999999999999999999999999
Q ss_pred ccCCCCceEEEEecceecCCCCCCChHHHHHHHhhccccCCCEEEEEEEEEeCCCCcccCCCCcceEEEEEEecCCCCcH
Q 001723 871 LSSTPPLAQLCSLAYIKIPALEDEYGPEAAEFLNEHTYNSSNEFRALVEERDSSGGKLKGQGTGTLLHVTLVAVDAEISI 950 (1020)
Q Consensus 871 f~~lP~qAi~c~LagV~p~~~~~~Ws~eA~~~f~~lllv~~k~l~a~V~~~~~~g~~i~~~~~~~~~~V~L~d~~~~~sI 950 (1020)
|..+|++|.+|+|++|+++. ..+..++++.+|.+ ...++.+++.+.... .++.++++|+...+..++
T Consensus 751 ~~~~p~~a~~~~L~~ik~~~-~~~~~e~~i~~l~~--~~~~~~~~~~~~~~i----------~~~~~~~~l~~~~~~~d~ 817 (875)
T KOG2039|consen 751 FSLLPPVAQECGLAGIKEPQ-LEDLKEEAIRYLDE--DTLGHKCQVNVELRV----------VGNSLLVTLLYTVEELDV 817 (875)
T ss_pred HhcCchHHhhhhhhcccCCc-ccchHHHHHHHHHH--Hhhcccceeeeeeee----------eccceeEEEeeecCcCCh
Confidence 99999999999999999985 57899999999999 666776666644322 145788999888789999
Q ss_pred HHHHHH-cCCeeeecccccCchhhHHHHHHHHHHHHHHHhhcccccccCCCCCCCCCCCc
Q 001723 951 NTLMVQ-EGLARVERRKRWGSRDRQAALENLEKFQEEAKTARIGMWQYGDIQSDDEDPLP 1009 (1020)
Q Consensus 951 ne~LV~-~GlA~~~~~~~~~~~~~~~~~~~l~~aq~~Ak~~r~g~W~yGD~~~dde~~~~ 1009 (1020)
++.|+. .|+.....++. .+-++...+.|..+|+.|++.|+++|.|||++.+|+++++
T Consensus 818 ~~~l~~~~~l~~~~~~~~--~~~~q~~~~~~~~~qq~a~~~~~~~~~y~~~~~~~~~~~~ 875 (875)
T KOG2039|consen 818 GEELVAVEGLSLVEQRKT--EEVLQALLDQLEKAQQEARKEHLNIWFYGDVTGKDADEVV 875 (875)
T ss_pred hHhhhhhccccccccccc--chHHHHHhhHhhhchhhHHhhhhhhhhhcCcccCcccccC
Confidence 999999 99999987762 3667999999999999999999999999999999998863
No 2
>smart00318 SNc Staphylococcal nuclease homologues.
Probab=99.91 E-value=9.1e-24 Score=209.77 Aligned_cols=131 Identities=39% Similarity=0.519 Sum_probs=113.1
Q ss_pred eEEEEEeEEccCCeEEEeeCCCCCCCCCCeeEEEEEeccCCCCCCCCCC----CchhHHHHHHHHHHhcCCCeEEEEEce
Q 001723 11 WYRARVKAVPSGDSLVITALSNPNPGPPREKTLTLSSIITPRLARRGGL----DEPFAWDSREFLRKLCIGKEVTFRVDY 86 (1020)
Q Consensus 11 ~~~~~V~~V~dGDTi~v~~~~~~~~g~~~~~~vrL~gIdaPe~~~~~~~----~ep~a~eAre~Lr~ll~Gk~V~~~~~~ 86 (1020)
.+.|+|.+|+|||||.|...+ + ...+|||+||||||..+.... .+|||.+|++||+++|.|+.|.|.++.
T Consensus 2 ~~~~~V~~V~DGDT~~v~~~~----~--~~~~vrL~gIdaPe~~~~~~~~~~~~~~~g~~A~~~l~~~l~g~~V~~~~~~ 75 (138)
T smart00318 2 EIRGVVERVLDGDTIRVRLPK----N--KLITIRLSGIDAPETARPNKGDGTTDEPFGEEAKEFLKKLLLGKKVQVEVDS 75 (138)
T ss_pred ceeEEEEEEecCCEEEEEeCC----C--CEEEEEEEeccCCccCCCCCCCccccCcHHHHHHHHHHHHhCCCEEEEEEec
Confidence 578999999999999999762 2 568999999999999865433 699999999999999999999999884
Q ss_pred ecCCCCcEEEEEEe-CCccHHHHHHHcCCEEEEEcCCcCCCCchhHHHHHHHHHHHHHcCCCccC
Q 001723 87 AVPNIGREFGTVIL-GDKNVAMLVVSEGWAKVKEQGSQKGEASPFLAELLRLEEQAKLQGLGRWS 150 (1020)
Q Consensus 87 ~~d~~gR~~g~v~~-~g~~v~~~lv~~GlA~v~~~~~~~~~~~~~~~~l~~aE~~Ar~~k~GiWs 150 (1020)
.|+|||.+|+||+ ++.|||++||++|||+++..+.. .....+.+|.+||++||++++|||+
T Consensus 76 -~D~~gr~~a~v~~~~~~~l~~~Lv~~G~A~~~~~~~~--~~~~~~~~l~~ae~~Ar~~~~GlW~ 137 (138)
T smart00318 76 -KDRYGRFLGTVYLNGGNNIAEELVKEGLAKVYRYADK--DEYRVYDELLEAEEAAKKARKGLWS 137 (138)
T ss_pred -cCCCCCEEEEEEECCCCcHHHHHHhcCCEEEEEecCc--cccHhHHHHHHHHHHHHHhCcCCCC
Confidence 7899999999999 56789999999999999987632 1122267899999999999999998
No 3
>PRK06518 hypothetical protein; Provisional
Probab=99.91 E-value=1.8e-23 Score=213.53 Aligned_cols=138 Identities=20% Similarity=0.232 Sum_probs=114.3
Q ss_pred CCCCCCeEEEEEeEEccCCeEEEeeCCCCCCCCCCeeEEEEEeccCCCCCCC---CCCCchhHHHHHHHHHHhcCCCeEE
Q 001723 5 AAAGGGWYRARVKAVPSGDSLVITALSNPNPGPPREKTLTLSSIITPRLARR---GGLDEPFAWDSREFLRKLCIGKEVT 81 (1020)
Q Consensus 5 ~~~~~~~~~~~V~~V~dGDTi~v~~~~~~~~g~~~~~~vrL~gIdaPe~~~~---~~~~ep~a~eAre~Lr~ll~Gk~V~ 81 (1020)
|..+...+.|+| +|+|||||+|.... ......++|||+||||||+... .+..+|||.+|+++|+.++.|+.|.
T Consensus 17 ~~~~~~~~~G~v-~V~DGDTl~l~~~~---~~~~~~~~VRL~GIDAPE~~Q~c~~~~~~wp~G~~A~~~L~~li~gk~V~ 92 (177)
T PRK06518 17 ASNNVVIFHGRA-QVTSGVTFKLIADG---WRKEITRDIRLYGVDTCAPRQKARLGDQEWPCGAVATAWLVTKTLNKWLS 92 (177)
T ss_pred cccccccccceE-EEEcCCEEEEeecc---ccCCCCeEEEEEEEcCCCCCCcccCCCCCCcHHHHHHHHHHHHHCCCeEE
Confidence 345666788998 79999999997431 0011247899999999998753 3467899999999999999999999
Q ss_pred EEEceecCCCCcEEEEEEeCCccHHHHHHHcCCEEEEEcCCcCCCCchhHHHHHHHHHHHHHcCCCccCCC
Q 001723 82 FRVDYAVPNIGREFGTVILGDKNVAMLVVSEGWAKVKEQGSQKGEASPFLAELLRLEEQAKLQGLGRWSKV 152 (1020)
Q Consensus 82 ~~~~~~~d~~gR~~g~v~~~g~~v~~~lv~~GlA~v~~~~~~~~~~~~~~~~l~~aE~~Ar~~k~GiWs~~ 152 (1020)
|... .|+|||.+|+||++|.+||++||++|||++|..+. +..+...|..+|++||++++|||+.+
T Consensus 93 ~~~~--~D~ygR~lA~~~~~g~dln~~mV~~G~A~ay~~~~----~~~~~~~y~~aE~~AR~~k~GLW~~~ 157 (177)
T PRK06518 93 CRQA--RMENGVHYAQCFVDGVDIAALGLAEGMAVLSKDDH----EDPGPAQYASLEEKARKAYRGLWSST 157 (177)
T ss_pred EEEe--cccCCCEEEEEEECCEEHHHHHHhCCCEEEEeecc----CCCCHHHHHHHHHHHHHhCCCCCCCC
Confidence 9965 38999999999999999999999999999998763 12334579999999999999999964
No 4
>smart00318 SNc Staphylococcal nuclease homologues.
Probab=99.90 E-value=4.1e-23 Score=205.11 Aligned_cols=138 Identities=32% Similarity=0.578 Sum_probs=117.3
Q ss_pred CcccEEEEEeccCCEEEEEEcCCceEEEEEEeeecCCCCCCCCCccccCcccccCCCccccccccchhhHHHHhhhcccC
Q 001723 186 RPMQGIVEQARDGSTLRVYLLPEFQFVQVFVAGIQAPAVARRPAAIVDTDTEETNGDVSAAEAVAPLNSAQRLAASTASA 265 (1020)
Q Consensus 186 ~~~~~~Ve~V~dG~t~~v~~~~~~~~~~v~l~Gi~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (1020)
++++|+|++|.|||||+|.+.+. +.++|+|+||+|||+.+...+
T Consensus 1 ~~~~~~V~~V~DGDT~~v~~~~~-~~~~vrL~gIdaPe~~~~~~~----------------------------------- 44 (138)
T smart00318 1 KEIRGVVERVLDGDTIRVRLPKN-KLITIRLSGIDAPETARPNKG----------------------------------- 44 (138)
T ss_pred CceeEEEEEEecCCEEEEEeCCC-CEEEEEEEeccCCccCCCCCC-----------------------------------
Confidence 36789999999999999987543 678999999999999764200
Q ss_pred CCCCCCchhHHHHHHHHHHHccCceEEEEEeeecCCCCEEEEEEecCCCChhHHHHHHHhcCcEEEEecccccchHHHHH
Q 001723 266 GQQSTDEPFALDAKYFTEMRVLNREVRIVLEGVDKFKNLIGSVFYPDGETAKDLAMELVENGLAKYIEWSANMMEEDAKR 345 (1020)
Q Consensus 266 ~~~~~~ep~~~eAk~f~~~~ll~r~V~v~~~~~d~~g~~~~~v~~~~g~~~~di~~~Ll~~GlA~~~~~~~~~~~~~~~~ 345 (1020)
...+.+|||.+|+.|++.+|++|+|++.+.+.|+|||++|+|++.+|. ||+++||++|||+++.+........ ..
T Consensus 45 -~~~~~~~~g~~A~~~l~~~l~g~~V~~~~~~~D~~gr~~a~v~~~~~~---~l~~~Lv~~G~A~~~~~~~~~~~~~-~~ 119 (138)
T smart00318 45 -DGTTDEPFGEEAKEFLKKLLLGKKVQVEVDSKDRYGRFLGTVYLNGGN---NIAEELVKEGLAKVYRYADKDEYRV-YD 119 (138)
T ss_pred -CccccCcHHHHHHHHHHHHhCCCEEEEEEeccCCCCCEEEEEEECCCC---cHHHHHHhcCCEEEEEecCccccHh-HH
Confidence 012468999999999999999999999999999999999999998776 4999999999999998766554322 35
Q ss_pred HHHHHHHHHHHhccccccC
Q 001723 346 RLKAADLQAKKTRLRMWTN 364 (1020)
Q Consensus 346 ~l~~ae~~Ak~~~~g~W~~ 364 (1020)
.|.+||++||++++|||++
T Consensus 120 ~l~~ae~~Ar~~~~GlW~~ 138 (138)
T smart00318 120 ELLEAEEAAKKARKGLWSD 138 (138)
T ss_pred HHHHHHHHHHHhCcCCCCC
Confidence 8999999999999999974
No 5
>cd00175 SNc Staphylococcal nuclease homologues. SNase homologues are found in bacteria, archaea, and eukaryotes. They contain no disufide bonds.
Probab=99.90 E-value=3.1e-23 Score=203.44 Aligned_cols=123 Identities=40% Similarity=0.560 Sum_probs=109.7
Q ss_pred EEccCCeEEEeeCCCCCCCCCCeeEEEEEeccCCCCCCC----CCCCchhHHHHHHHHHHhcCCCeEEEEEceecCCCCc
Q 001723 18 AVPSGDSLVITALSNPNPGPPREKTLTLSSIITPRLARR----GGLDEPFAWDSREFLRKLCIGKEVTFRVDYAVPNIGR 93 (1020)
Q Consensus 18 ~V~dGDTi~v~~~~~~~~g~~~~~~vrL~gIdaPe~~~~----~~~~ep~a~eAre~Lr~ll~Gk~V~~~~~~~~d~~gR 93 (1020)
+|+|||||.|...+ + ...+|||+||||||+... ....+|||.+|++||++++.|++|.|.++. .|+|||
T Consensus 1 rV~dGDt~~v~~~~----~--~~~~vrL~gId~Pe~~~~~~~~~~~~~~~g~~A~~~l~~~l~~~~V~i~~~~-~d~~gr 73 (129)
T cd00175 1 RVIDGDTIRVRLPP----G--PLITVRLSGIDAPETARPNKGKSETDEPFGEEAKEFLKKLLLGKKVQVEVDS-KDRYGR 73 (129)
T ss_pred CeecCcEEEEEeCC----C--CEEEEEEEeecCccccCCccCCCCCCCchHHHHHHHHHHHhCCCEEEEEEcc-CCCCCC
Confidence 58999999999862 2 568999999999999765 356899999999999999999999999884 889999
Q ss_pred EEEEEEeCC-ccHHHHHHHcCCEEEEEcCCcCCCCchhHHHHHHHHHHHHHcCCCccC
Q 001723 94 EFGTVILGD-KNVAMLVVSEGWAKVKEQGSQKGEASPFLAELLRLEEQAKLQGLGRWS 150 (1020)
Q Consensus 94 ~~g~v~~~g-~~v~~~lv~~GlA~v~~~~~~~~~~~~~~~~l~~aE~~Ar~~k~GiWs 150 (1020)
.+|+||+++ .+||++||++|||+++..+. ....+...|.+||++||++++|||+
T Consensus 74 ~la~v~~~~~~~v~~~Lv~~G~A~~~~~~~---~~~~~~~~l~~ae~~Ak~~k~GiW~ 128 (129)
T cd00175 74 TLGTVYLNGGENIAEELVKEGLARVYRYYP---DDSEYYDELLEAEEAAKKARKGLWS 128 (129)
T ss_pred EEEEEEeCCCCcHHHHHHhcCCEEEEEECC---CCcHHHHHHHHHHHHHHHhCcCCCC
Confidence 999999987 99999999999999998873 2257889999999999999999997
No 6
>cd00175 SNc Staphylococcal nuclease homologues. SNase homologues are found in bacteria, archaea, and eukaryotes. They contain no disufide bonds.
Probab=99.88 E-value=3.1e-22 Score=196.39 Aligned_cols=129 Identities=34% Similarity=0.604 Sum_probs=110.5
Q ss_pred EeccCCEEEEEEcCCceEEEEEEeeecCCCCCCCCCccccCcccccCCCccccccccchhhHHHHhhhcccCCCCCCCch
Q 001723 194 QARDGSTLRVYLLPEFQFVQVFVAGIQAPAVARRPAAIVDTDTEETNGDVSAAEAVAPLNSAQRLAASTASAGQQSTDEP 273 (1020)
Q Consensus 194 ~V~dG~t~~v~~~~~~~~~~v~l~Gi~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ep 273 (1020)
+|.|||||+|.+.++ +.++|+|+||+|||+..... + ...+.+|
T Consensus 1 rV~dGDt~~v~~~~~-~~~~vrL~gId~Pe~~~~~~-----------~-------------------------~~~~~~~ 43 (129)
T cd00175 1 RVIDGDTIRVRLPPG-PLITVRLSGIDAPETARPNK-----------G-------------------------KSETDEP 43 (129)
T ss_pred CeecCcEEEEEeCCC-CEEEEEEEeecCccccCCcc-----------C-------------------------CCCCCCc
Confidence 589999999987644 67899999999999876320 0 0245899
Q ss_pred hHHHHHHHHHHHccCceEEEEEeeecCCCCEEEEEEecCCCChhHHHHHHHhcCcEEEEecccccchHHHHHHHHHHHHH
Q 001723 274 FALDAKYFTEMRVLNREVRIVLEGVDKFKNLIGSVFYPDGETAKDLAMELVENGLAKYIEWSANMMEEDAKRRLKAADLQ 353 (1020)
Q Consensus 274 ~~~eAk~f~~~~ll~r~V~v~~~~~d~~g~~~~~v~~~~g~~~~di~~~Ll~~GlA~~~~~~~~~~~~~~~~~l~~ae~~ 353 (1020)
||.+|+.|++.+|++|+|.|.+.+.|+|||++|+|++.++. ||+++||++|||+++.+.... ......|.+||++
T Consensus 44 ~g~~A~~~l~~~l~~~~V~i~~~~~d~~gr~la~v~~~~~~---~v~~~Lv~~G~A~~~~~~~~~--~~~~~~l~~ae~~ 118 (129)
T cd00175 44 FGEEAKEFLKKLLLGKKVQVEVDSKDRYGRTLGTVYLNGGE---NIAEELVKEGLARVYRYYPDD--SEYYDELLEAEEA 118 (129)
T ss_pred hHHHHHHHHHHHhCCCEEEEEEccCCCCCCEEEEEEeCCCC---cHHHHHHhcCCEEEEEECCCC--cHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999997645 499999999999999876554 2345699999999
Q ss_pred HHHhccccccC
Q 001723 354 AKKTRLRMWTN 364 (1020)
Q Consensus 354 Ak~~~~g~W~~ 364 (1020)
||++|+|||++
T Consensus 119 Ak~~k~GiW~~ 129 (129)
T cd00175 119 AKKARKGLWSD 129 (129)
T ss_pred HHHhCcCCCCC
Confidence 99999999974
No 7
>KOG2039 consensus Transcriptional coactivator p100 [Transcription]
Probab=99.88 E-value=4.8e-22 Score=246.50 Aligned_cols=516 Identities=25% Similarity=0.329 Sum_probs=360.1
Q ss_pred ceeeEEEEEeeCcEEEEEeCCCCCCCccceeEEEeecccCCCCCCCCCCCccchhHHHHHHHHHhhcCCcEEEEEEeeee
Q 001723 379 NFTGKVVEVVSGDCIIVADDSIPYGNALAERRVNLSSIRCPKIGNPRKDEKPAAYAREAREFLRTRLIGRQVNVQMEYSR 458 (1020)
Q Consensus 379 ~~~~~V~~v~~gd~i~v~~~~~~~~~~~~e~~v~ls~i~~p~~~~~~~~~~~~~~~~eare~lr~~~igk~v~~~~~y~~ 458 (1020)
...|.|..|.|||.++|+. ...+.++++..++|+++.+|++.....+ .++||+|++++|+|+.+|||.+.|+.+| .
T Consensus 4 ~~~~~v~~v~s~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~d~p~~~~~~~~~~~~~~~k~~~v~~~~-~ 79 (875)
T KOG2039|consen 4 RLVGYVKAVLSGDAFVIRG--SPRAGPPPEFQINLSNVKAPNEARRDKG-VDEPFAWESREFLRKSEIGKEVAVTRDQ-M 79 (875)
T ss_pred EEeeeEEEEeccCccEEEc--ccccCCCCCceEEEeecCCccccccCCC-CCCCcChhhHHHHHHHhccceeeeEEee-e
Confidence 4579999999999999998 2345677899999999999998632112 3799999999999999999999999999 3
Q ss_pred eccccccccccCCCCCCCCCCCCCCccccccCCCCCCCccccccceeeeeeeEEecCCCCCCCCCchhhhccccCCCCCC
Q 001723 459 KVVVEAAPVAAGAKGPAGTKGPAGTKGQAAAKGPAGEESVGATETRIIDFGSIFLLSPIKGEGDDASAVAQSNAAGQPAG 538 (1020)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g 538 (1020)
... . .+.+|.++++ +
T Consensus 80 ~~~----------------~--------------------------~~e~~~~~~~-----------------------~ 94 (875)
T KOG2039|consen 80 SAN----------------N--------------------------GREVGFIYLG-----------------------D 94 (875)
T ss_pred ccc----------------c--------------------------ccccceeecC-----------------------c
Confidence 221 2 2567888772 3
Q ss_pred cchhHHHHhcccceeeecCCccccchHHHHHHHHHHHHHhcCCCCCCCCCCCceeeeeCCCccccchhccccccccCCcc
Q 001723 539 VNVAELVVSRGLGNVINHRDFEERSNYYDALLAAEARAKAGKKGCYSSKEPPVMHIQDLTMAPVKKARDFLPFLQRSRRI 618 (1020)
Q Consensus 539 ~nv~~~lv~~G~a~v~~~~~~~~~s~~y~~L~~ae~~A~~~~~G~~~~~~~~~~~~~d~~~~~~~~~k~~l~~~~~~~~l 618 (1020)
.|+++.|+..|++++++..... +.|...|.+.|.+|++.++|+|+. .. +.+.++.. ....++.|+... .++++
T Consensus 95 ~~~a~~lv~~g~~~~~~~~~~~--~~~~~~l~~~~~~~k~~~~g~w~~-~~--~~~~~~~~-~~~~p~~~~~~~-~~~~~ 167 (875)
T KOG2039|consen 95 ENSAESLVKEGLLDVRDEGVRN--SSYFKTLDEVEVQAKQSGRGIWSK-LD--HFIRNLKD-SALNPAELVDAV-GGKPV 167 (875)
T ss_pred chhHHHHHhccCCccccccccc--chhhhhhhhhhhhhhhhccccccc-cc--cceeeccc-cccccHHHHHhc-CCcee
Confidence 6999999999999998764321 788999999999999999999992 22 22666642 455667777766 57899
Q ss_pred CEEEEEEecCC-EEEEEecCCceeEEEEEecccCCCC----------CCcChHHHHHHHHHHhcCceEEEEEEEECCCCc
Q 001723 619 PAVVEYVLSGH-RFKVLIPKETCSIAFSFSGVRCPGR----------NERYSNEALLLMRQKILQRDVEIEVETVDRTGT 687 (1020)
Q Consensus 619 ~~vVe~V~~G~-~~~v~lp~~~~~i~~~LaGI~~P~~----------~e~w~~EA~~flk~~ll~R~V~v~V~~~Dk~G~ 687 (1020)
.|+|++|.+|+ +.|+++-+....+++.|+|+.||.. ..+|+.+|..|+...+++|.+.+.+.+...+-.
T Consensus 168 ~~~ve~v~~~~~~~rv~~~p~~~~~~v~lSg~~~P~~~~~s~~~~~~~~~~~~~a~~f~~~~~~~r~~~i~~~~~~~~~~ 247 (875)
T KOG2039|consen 168 NAIVEHVRDGEDTVRVLLRPELKYVTVRLSGKRCPSQGPPSDGSPSVPDPFADEAKLFSEDRLLQRAVAIPLESEENYVF 247 (875)
T ss_pred eeehhhccChhhhhhHHhccccceeEEecccccCCCCCCCCCCCCCCCCcHHHHHHHhcccchhhhceeeeecccccccc
Confidence 99999999999 5777664566778999999999983 267999999999999999999999999876645
Q ss_pred EEEEEEeCCccHHHHHHHcCCEEEeeecCCCCCC--ChHHHHHHHHHHHhccccc-cccccccccccCC-----------
Q 001723 688 FLGSLWESRTNVAVILLEAGLAKLQTSFGSDRIP--DSHLLEQAEKSAKSQKLKI-WENYVEGEEVSNG----------- 753 (1020)
Q Consensus 688 ~~g~L~~~~~nIa~~Lv~~GlA~~~~~~s~~~~~--~~~~L~~AE~~Ak~~k~gl-W~~~~~~~~~~~~----------- 753 (1020)
++++++.+..+|+..|+.+|++.+.. ++....+ ....++.++..++..+..+ |+++..+....+.
T Consensus 248 ~~g~v~~~~~~i~~~~~~~~~~k~v~-~s~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~q~~~s~~~~~~~~~~~~~v~ 326 (875)
T KOG2039|consen 248 FVGDVLYPDGNIALELLSEGLAKCVD-WSKNEIPCGAAKKLRAAERLAKEHRLRVLWKNYQVPLSTSESIDDKGFSGKVV 326 (875)
T ss_pred ccccccccccceeeehhccchHHHHH-hhhhccCchhhhhhhHHhhccchhHHHHHHhccccccchheeeccccccceee
Confidence 67788887779999999999998863 3322222 2345788888888888888 9988755321000
Q ss_pred -----Cc--ccCCCccEEEE---------------------------------------------------------EEE
Q 001723 754 -----AA--VEGKQKEVLKV---------------------------------------------------------VVT 769 (1020)
Q Consensus 754 -----~~--~~~~~~~~~~V---------------------------------------------------------~Vt 769 (1020)
+. .....|....+ .|+
T Consensus 327 e~~~~d~~~~~~~sg~~~~~~~~~i~~pr~~~~~~~~~p~~~~~q~~a~~~~~~~~i~~~v~~~~~~~~~~~~~~~~~~c 406 (875)
T KOG2039|consen 327 EVLVSDCVLVALDSGSENKLFLSSIRLPRAGEPGRSLKPYISPVQLVAREFLRKKLIGKRVILQMDVIRPRRENVPTKVC 406 (875)
T ss_pred eeeccCceEEecCCCCceEEEeeeccCccccccccccCCccccHHHHhhhhhhhhccCceeeEeeecccccccccccccc
Confidence 00 00000111111 122
Q ss_pred EEecCCe---EEEEEcCc----hhHHHHHHHHHHHHhcCCCCCCCCCCcCCCeEEEEEcCC-CcEEEEEEEeeccccccc
Q 001723 770 EILGGGK---FYVQQVGD----QKVASVQQQLASLNLQEAPVIGAFNPKKGEIVLAQFSAD-NSWNRAMIVNAPREKVES 841 (1020)
Q Consensus 770 ~V~sp~~---FyvQ~~~~----~~L~~L~~~L~~~~~~~~~~~~~~~p~~G~~c~A~fs~D-~~WYRA~V~~~~~~~~~~ 841 (1020)
.+.+++. +++....+ ....++-.+++.+|.. -.........|..++..+..+ ..|++..+..+.
T Consensus 407 ~~~~~~~~~~a~~~~~kg~~~~v~~~~~~~~~s~~~d~--ll~~E~~~~~~~~~~~s~~~~~~~~~~~~~~~i~------ 478 (875)
T KOG2039|consen 407 ALPLGGGKNVAELLVKKGLATVVRKRQDDEQRSSHYDL--LLVAEAIAIKGKKGCHSKKLDPTLRITDLTVDIV------ 478 (875)
T ss_pred cccCCCcceeeEEEecccchhhhhhHhhhhhhcchhhh--hhcchHHHHhhhhhhcccCCCcceeechhhhhhh------
Confidence 2222331 12222111 1111222223333310 111112233444455544444 679999998885
Q ss_pred cCCEEEEEEEecCCceeecCCCcccCCccccCCCCceEEEEecceec--CC-------CCCCChHHHHHHHhhccccCCC
Q 001723 842 VNDKFEVFYIDYGNQELVPYNKLRPIDPSLSSTPPLAQLCSLAYIKI--PA-------LEDEYGPEAAEFLNEHTYNSSN 912 (1020)
Q Consensus 842 ~~~~v~V~fVDyGn~e~V~~~~Lr~Lp~~f~~lP~qAi~c~LagV~p--~~-------~~~~Ws~eA~~~f~~lllv~~k 912 (1020)
.+.+..+.+.|.|+....-...+..-..-...+|.....|+++.-.. +. .+..|..+++++.+. ++..+
T Consensus 479 ~n~~~~~~~~~~~~~~~~~v~~~~~gs~~~~~~pk~~~~~~~~~~g~~~~~~~r~~~~~~e~~~~~~~~~~~~--~vl~~ 556 (875)
T KOG2039|consen 479 RNKVQFLPSLDRGNRVEAIVEAVISGSRLRLYIPKETCYCQFALAGIDCPSGARNDVQEGEPFSEEAIEFTRS--LVLQR 556 (875)
T ss_pred cCcEEeehhhccccceeeeeeeeeccccceeccCCcceeEEEeeccccCcccccccccccCCccHHHHHHhhh--heecc
Confidence 45668888899998777666666555555667888888887665443 21 267899999999999 67789
Q ss_pred EEEEEEEEEeCCCCcccCCCCcceEEEEEEecCCCCcHHHHHHHcCCeeeecccccCchhhHHHHHHHHHHHHHHH-hhc
Q 001723 913 EFRALVEERDSSGGKLKGQGTGTLLHVTLVAVDAEISINTLMVQEGLARVERRKRWGSRDRQAALENLEKFQEEAK-TAR 991 (1020)
Q Consensus 913 ~l~a~V~~~~~~g~~i~~~~~~~~~~V~L~d~~~~~sIne~LV~~GlA~~~~~~~~~~~~~~~~~~~l~~aq~~Ak-~~r 991 (1020)
.+.+.|..+..+|.+ +.+... +.+.++...++++||+-.. . . .++...+..|..++..|+ ...
T Consensus 557 ~~~l~v~~~~~~~~~---------l~~~~~--~~~~~~s~~~~e~~L~~~~-~-~---~e~~~~~~~~~s~~~~ak~~~k 620 (875)
T KOG2039|consen 557 EVELEVEITDKNGNF---------LGSLYE--DSKTNLSLKLLEQGLAPEH-F-A---AERSSEYPPLESAELPAKLEQK 620 (875)
T ss_pred ceEEEEeeeccCccc---------cccccc--cccccchhhhhhhhcCccc-h-h---hhhhhhccchhhhhhccccchh
Confidence 999999988876532 111111 1267888899999999876 1 1 233567888999999999 999
Q ss_pred cccccc
Q 001723 992 IGMWQY 997 (1020)
Q Consensus 992 ~g~W~y 997 (1020)
.+||.-
T Consensus 621 ~~~~~~ 626 (875)
T KOG2039|consen 621 LKIWLN 626 (875)
T ss_pred cceeec
Confidence 999964
No 8
>PF00567 TUDOR: Tudor domain; InterPro: IPR008191 There are multiple copies of this domain in the Drosophila melanogaster tudor protein and it has been identified in several RNA-binding proteins []. Although the function of this domain is unknown, in Drosophila melanogaster the tudor protein is required during oogenesis for the formation of primordial germ cells and for normal abdominal segmentation [].; PDB: 3NTI_A 3NTK_B 3NTH_A 2DIQ_A 3FDR_A 3PNW_O 3S6W_A 3PMT_A 2WAC_A 2O4X_A ....
Probab=99.83 E-value=4e-20 Score=177.71 Aligned_cols=119 Identities=33% Similarity=0.521 Sum_probs=98.4
Q ss_pred CccEEEEEEEEEecCCeEEEEEcC-chhHHHHHHHHHHHHhcCCCCCCCCCCcCCCeEEEEEcCCCcEEEEEEEeecccc
Q 001723 760 QKEVLKVVVTEILGGGKFYVQQVG-DQKVASVQQQLASLNLQEAPVIGAFNPKKGEIVLAQFSADNSWNRAMIVNAPREK 838 (1020)
Q Consensus 760 ~~~~~~V~Vt~V~sp~~FyvQ~~~-~~~L~~L~~~L~~~~~~~~~~~~~~~p~~G~~c~A~fs~D~~WYRA~V~~~~~~~ 838 (1020)
.++.+.|.||+|.+|++||++... ...+++|+++|+.++..... .....+.+|..|++.+..|+.||||+|....
T Consensus 2 ~~~~~~v~It~v~~~~~~~v~~~~~~~~~~~l~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~w~Ra~I~~~~--- 77 (121)
T PF00567_consen 2 VGKTFEVYITHVDSPGEFYVQPDSADKAYEKLQEELQDYYENNPK-SPSPESNPGEGCLCVVSEDGRWYRAVITVDI--- 77 (121)
T ss_dssp ---EEEEEEEEECTTSEEEEEECCCHHHHHHHHHHHHHHHHHS-C-TTCST--TTEEEEEEETTTSEEEEEEEEEEE---
T ss_pred CCCEEEEEEEEEecCCEEEEEEcCCHHHHHHHHHHHHHHHhcccc-cCccccccCCEEEEEEecCCceeeEEEEEec---
Confidence 367899999999999999998777 47899999999999976544 2245678999999999999999999993322
Q ss_pred ccccCCEEEEEEEecCCceeecCCCcccCCccccCCCCceEEEEecc
Q 001723 839 VESVNDKFEVFYIDYGNQELVPYNKLRPIDPSLSSTPPLAQLCSLAY 885 (1020)
Q Consensus 839 ~~~~~~~v~V~fVDyGn~e~V~~~~Lr~Lp~~f~~lP~qAi~c~Lag 885 (1020)
.++.+.|+|||||+++.|+.++||+||++|..+|+||++|+|+|
T Consensus 78 ---~~~~~~V~~iD~G~~~~v~~~~l~~l~~~~~~~P~~a~~~~L~g 121 (121)
T PF00567_consen 78 ---DENQYKVFLIDYGNTEKVSASDLRPLPPEFASLPPQAIKCKLAG 121 (121)
T ss_dssp ---CTTEEEEEETTTTEEEEEEGGGEEE--HHHCSSSSSCEEEEET-
T ss_pred ---ccceeEEEEEecCceEEEcHHHhhhhCHHHhhCChhhEEEEEcC
Confidence 78999999999999999999999999999999999999999987
No 9
>COG1525 Micrococcal nuclease (thermonuclease) homologs [DNA replication, recombination, and repair]
Probab=99.81 E-value=2.2e-19 Score=188.50 Aligned_cols=128 Identities=29% Similarity=0.431 Sum_probs=112.3
Q ss_pred EEEEEeEEccCCeEEEeeCCCCCCCCCCeeEEEEEeccCCCCCCC--CCCCchhHHHHHHHHHHhcCC-CeEEEEEceec
Q 001723 12 YRARVKAVPSGDSLVITALSNPNPGPPREKTLTLSSIITPRLARR--GGLDEPFAWDSREFLRKLCIG-KEVTFRVDYAV 88 (1020)
Q Consensus 12 ~~~~V~~V~dGDTi~v~~~~~~~~g~~~~~~vrL~gIdaPe~~~~--~~~~ep~a~eAre~Lr~ll~G-k~V~~~~~~~~ 88 (1020)
..+.|.+|+|||||.+.... .+..+|||.||||||.... .+..+|||.+|++||++++.+ +.|.|......
T Consensus 42 ~~~~v~~v~dGDT~~v~~~~------~~~~~iRl~gIdaPe~~~~~~~~~~~~~G~~A~~~l~~~l~~~~~v~~~~~~~~ 115 (192)
T COG1525 42 PDSTVVRVIDGDTLKVRGEG------GQAVKIRLAGIDAPETKQTCAGGKSQPCGEEAREFLRNLLLGRRTVECDLADRK 115 (192)
T ss_pred CCCceEEecCCCeEEEecCC------CceeEEEEeccCCCcccccCCcccccchHHHHHHHHHHHhcCCceEEEecCCcc
Confidence 45789999999999999872 2568999999999999864 456899999999999999997 88888866327
Q ss_pred CCCCcEEEEEEeCCccHHHHHHHcCCEEEEEcCCcCCCCchhHHHHHHHHHHHHHcCCCccCCC
Q 001723 89 PNIGREFGTVILGDKNVAMLVVSEGWAKVKEQGSQKGEASPFLAELLRLEEQAKLQGLGRWSKV 152 (1020)
Q Consensus 89 d~~gR~~g~v~~~g~~v~~~lv~~GlA~v~~~~~~~~~~~~~~~~l~~aE~~Ar~~k~GiWs~~ 152 (1020)
|+|||.+|+||.+|.+||.+||++|||+++. . ..++..|.++|+.||++++|||+.+
T Consensus 116 d~y~R~la~v~~~~~~v~~~lV~~G~A~~~~-~------~~~~~~~~~ae~~Ar~~~~GiW~~~ 172 (192)
T COG1525 116 DRYGRLLAYVTVDGTDVNLELVKEGLARVYY-N------SEYGGEYAEAEEEARKRRLGIWSDD 172 (192)
T ss_pred cCCCcEEEEEEECCEEHHHHHHhCCCEEEec-c------ccchHHHHHHHHHHHHcccCccCCC
Confidence 8999999999999999999999999999998 1 2446789999999999999999986
No 10
>PF00565 SNase: Staphylococcal nuclease homologue; InterPro: IPR006021 Staphylococcus aureus nuclease (SNase) homologues, previously thought to be restricted to bacteria and archaea, are also in eukaryotes. Staphylococcal nuclease has multidomain organisation []. The human cellular coactivator p100 contains four repeats, each of which is a SNase homologue. These repeats are unlikely to possess SNase-like activities as each lacks equivalent SNase catalytic residues, yet they may mediate p100's single-stranded DNA-binding function []. alA variety of proteins including many that are still uncharacterised belong to this group.; GO: 0003676 nucleic acid binding, 0016788 hydrolase activity, acting on ester bonds; PDB: 2PZT_A 2KQ3_A 2PZU_A 2PW5_A 2KHS_B 3QON_A 3QOJ_A 2OXP_A 3QOL_A 2PYK_A ....
Probab=99.80 E-value=1.2e-19 Score=171.99 Aligned_cols=107 Identities=29% Similarity=0.497 Sum_probs=94.8
Q ss_pred EEEEEeccCCCCCCCCCCCchhHHHHHHHHHHhcCCCeEEEEEcee-cCCCCcEEEEEEeCCccHHHHHHHcCCEEEEEc
Q 001723 42 TLTLSSIITPRLARRGGLDEPFAWDSREFLRKLCIGKEVTFRVDYA-VPNIGREFGTVILGDKNVAMLVVSEGWAKVKEQ 120 (1020)
Q Consensus 42 ~vrL~gIdaPe~~~~~~~~ep~a~eAre~Lr~ll~Gk~V~~~~~~~-~d~~gR~~g~v~~~g~~v~~~lv~~GlA~v~~~ 120 (1020)
+|||+|||||+..+.+...+|||.+|++||++++.++.|.+.+... .|++||.+|+|++++.+||++||++|||+++..
T Consensus 1 ~vrL~gI~~Pe~~~~~~~~~~~~~~A~~~l~~~l~~~~~~~~~~~~~~d~~gr~~~~v~~~~~~in~~Ll~~GlA~v~~~ 80 (108)
T PF00565_consen 1 KVRLAGIDAPETNQPDKPEEPYGQEAKEFLRELLLGRQVVVEVDDIKQDKYGRLLAYVYVDGEDINEELLEEGLARVYRR 80 (108)
T ss_dssp EEEETTEE-SSSTCCCTTTSTTHHHHHHHHHHHHHTCSCEEEEEESSBSTTSCEEEEEEETTEEHHHHHHHTTSSEE-CG
T ss_pred CEEEEEEECCCCCCCCCccchHHHHHHHHHHHHhCCCeeeecccccCCCCCCceeEEEEEechhhhHHHHhCCeEEEEEe
Confidence 6999999999998777789999999999999999999999998864 689999999999999999999999999999986
Q ss_pred CCcCCCCchhHHHHHHHHHHHHHcCCCccCC
Q 001723 121 GSQKGEASPFLAELLRLEEQAKLQGLGRWSK 151 (1020)
Q Consensus 121 ~~~~~~~~~~~~~l~~aE~~Ar~~k~GiWs~ 151 (1020)
.. ....+++.|.+||++||++++|||++
T Consensus 81 ~~---~~~~~~~~~~~ae~~A~~~k~GiW~~ 108 (108)
T PF00565_consen 81 YP---SNSEYYASLLQAEEEARKAKKGIWSE 108 (108)
T ss_dssp BT---TBCTTHHHHHHHHHHHHHTT-GGGCT
T ss_pred cC---CCcHHHHHHHHHHHHHHHhCcCCCCC
Confidence 53 24677899999999999999999984
No 11
>PRK06518 hypothetical protein; Provisional
Probab=99.78 E-value=4.8e-18 Score=173.74 Aligned_cols=136 Identities=15% Similarity=0.125 Sum_probs=109.5
Q ss_pred cCCCcccEEEEEeccCCEEEEEEc--CCceEEEEEEeeecCCCCCCCCCccccCcccccCCCccccccccchhhHHHHhh
Q 001723 183 NKGRPMQGIVEQARDGSTLRVYLL--PEFQFVQVFVAGIQAPAVARRPAAIVDTDTEETNGDVSAAEAVAPLNSAQRLAA 260 (1020)
Q Consensus 183 ~~~~~~~~~Ve~V~dG~t~~v~~~--~~~~~~~v~l~Gi~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (1020)
.....+.|.| .|+|||||+|.-. ..+...+|||+|||+||...... .
T Consensus 19 ~~~~~~~G~v-~V~DGDTl~l~~~~~~~~~~~~VRL~GIDAPE~~Q~c~----------~-------------------- 67 (177)
T PRK06518 19 NNVVIFHGRA-QVTSGVTFKLIADGWRKEITRDIRLYGVDTCAPRQKAR----------L-------------------- 67 (177)
T ss_pred cccccccceE-EEEcCCEEEEeeccccCCCCeEEEEEEEcCCCCCCccc----------C--------------------
Confidence 4567788988 7999999999521 11236799999999999864210 0
Q ss_pred hcccCCCCCCCchhHHHHHHHHHHHccCceEEEEEeeecCCCCEEEEEEecCCCChhHHHHHHHhcCcEEEEecccccch
Q 001723 261 STASAGQQSTDEPFALDAKYFTEMRVLNREVRIVLEGVDKFKNLIGSVFYPDGETAKDLAMELVENGLAKYIEWSANMME 340 (1020)
Q Consensus 261 ~~~~~~~~~~~ep~~~eAk~f~~~~ll~r~V~v~~~~~d~~g~~~~~v~~~~g~~~~di~~~Ll~~GlA~~~~~~~~~~~ 340 (1020)
..+.+|||.+|+.|+..+++++.|++...+ |+|||++|+++.. |. ||+++||++|||..+....+..
T Consensus 68 -------~~~~wp~G~~A~~~L~~li~gk~V~~~~~~-D~ygR~lA~~~~~-g~---dln~~mV~~G~A~ay~~~~~~~- 134 (177)
T PRK06518 68 -------GDQEWPCGAVATAWLVTKTLNKWLSCRQAR-MENGVHYAQCFVD-GV---DIAALGLAEGMAVLSKDDHEDP- 134 (177)
T ss_pred -------CCCCCcHHHHHHHHHHHHHCCCeEEEEEec-ccCCCEEEEEEEC-CE---EHHHHHHhCCCEEEEeeccCCC-
Confidence 135899999999999999999999999887 9999999999984 44 5999999999999976433322
Q ss_pred HHHHHHHHHHHHHHHHhccccccC
Q 001723 341 EDAKRRLKAADLQAKKTRLRMWTN 364 (1020)
Q Consensus 341 ~~~~~~l~~ae~~Ak~~~~g~W~~ 364 (1020)
....|..||++||++|+|||+.
T Consensus 135 --~~~~y~~aE~~AR~~k~GLW~~ 156 (177)
T PRK06518 135 --GPAQYASLEEKARKAYRGLWSS 156 (177)
T ss_pred --CHHHHHHHHHHHHHhCCCCCCC
Confidence 1237999999999999999985
No 12
>PF00565 SNase: Staphylococcal nuclease homologue; InterPro: IPR006021 Staphylococcus aureus nuclease (SNase) homologues, previously thought to be restricted to bacteria and archaea, are also in eukaryotes. Staphylococcal nuclease has multidomain organisation []. The human cellular coactivator p100 contains four repeats, each of which is a SNase homologue. These repeats are unlikely to possess SNase-like activities as each lacks equivalent SNase catalytic residues, yet they may mediate p100's single-stranded DNA-binding function []. alA variety of proteins including many that are still uncharacterised belong to this group.; GO: 0003676 nucleic acid binding, 0016788 hydrolase activity, acting on ester bonds; PDB: 2PZT_A 2KQ3_A 2PZU_A 2PW5_A 2KHS_B 3QON_A 3QOJ_A 2OXP_A 3QOL_A 2PYK_A ....
Probab=99.74 E-value=6.3e-18 Score=160.25 Aligned_cols=106 Identities=30% Similarity=0.535 Sum_probs=88.4
Q ss_pred EEEEeeecCCCCCCCCCccccCcccccCCCccccccccchhhHHHHhhhcccCCCCCCCchhHHHHHHHHHHHccCceEE
Q 001723 213 QVFVAGIQAPAVARRPAAIVDTDTEETNGDVSAAEAVAPLNSAQRLAASTASAGQQSTDEPFALDAKYFTEMRVLNREVR 292 (1020)
Q Consensus 213 ~v~l~Gi~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ep~~~eAk~f~~~~ll~r~V~ 292 (1020)
+|||+||+||++.+.. .+.+|||.+|+.|++.+|++++|.
T Consensus 1 ~vrL~gI~~Pe~~~~~----------------------------------------~~~~~~~~~A~~~l~~~l~~~~~~ 40 (108)
T PF00565_consen 1 KVRLAGIDAPETNQPD----------------------------------------KPEEPYGQEAKEFLRELLLGRQVV 40 (108)
T ss_dssp EEEETTEE-SSSTCCC----------------------------------------TTTSTTHHHHHHHHHHHHHTCSCE
T ss_pred CEEEEEEECCCCCCCC----------------------------------------CccchHHHHHHHHHHHHhCCCeee
Confidence 6899999999987632 368999999999999999999999
Q ss_pred EEEeee--cCCCCEEEEEEecCCCChhHHHHHHHhcCcEEEEecccccchHHHHHHHHHHHHHHHHhccccccC
Q 001723 293 IVLEGV--DKFKNLIGSVFYPDGETAKDLAMELVENGLAKYIEWSANMMEEDAKRRLKAADLQAKKTRLRMWTN 364 (1020)
Q Consensus 293 v~~~~~--d~~g~~~~~v~~~~g~~~~di~~~Ll~~GlA~~~~~~~~~~~~~~~~~l~~ae~~Ak~~~~g~W~~ 364 (1020)
+.+.+. |++||++|+|+++ +. ||+++||++|||+++...... ......|..||++||++|+|||++
T Consensus 41 ~~~~~~~~d~~gr~~~~v~~~-~~---~in~~Ll~~GlA~v~~~~~~~--~~~~~~~~~ae~~A~~~k~GiW~~ 108 (108)
T PF00565_consen 41 VEVDDIKQDKYGRLLAYVYVD-GE---DINEELLEEGLARVYRRYPSN--SEYYASLLQAEEEARKAKKGIWSE 108 (108)
T ss_dssp EEEEESSBSTTSCEEEEEEET-TE---EHHHHHHHTTSSEE-CGBTTB--CTTHHHHHHHHHHHHHTT-GGGCT
T ss_pred ecccccCCCCCCceeEEEEEe-ch---hhhHHHHhCCeEEEEEecCCC--cHHHHHHHHHHHHHHHhCcCCCCC
Confidence 999877 9999999999998 44 599999999999998744332 223359999999999999999985
No 13
>COG1525 Micrococcal nuclease (thermonuclease) homologs [DNA replication, recombination, and repair]
Probab=99.66 E-value=7e-16 Score=162.00 Aligned_cols=129 Identities=30% Similarity=0.418 Sum_probs=109.2
Q ss_pred ccEEEEEeccCCEEEEEEcCCceEEEEEEeeecCCCCCCCCCccccCcccccCCCccccccccchhhHHHHhhhcccCCC
Q 001723 188 MQGIVEQARDGSTLRVYLLPEFQFVQVFVAGIQAPAVARRPAAIVDTDTEETNGDVSAAEAVAPLNSAQRLAASTASAGQ 267 (1020)
Q Consensus 188 ~~~~Ve~V~dG~t~~v~~~~~~~~~~v~l~Gi~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (1020)
..+.|.+|.|||||.+.... .+.++|||+|||+||+.... .
T Consensus 42 ~~~~v~~v~dGDT~~v~~~~-~~~~~iRl~gIdaPe~~~~~-----------~--------------------------- 82 (192)
T COG1525 42 PDSTVVRVIDGDTLKVRGEG-GQAVKIRLAGIDAPETKQTC-----------A--------------------------- 82 (192)
T ss_pred CCCceEEecCCCeEEEecCC-CceeEEEEeccCCCcccccC-----------C---------------------------
Confidence 56889999999999998543 46789999999999986521 0
Q ss_pred CCCCchhHHHHHHHHHHHccC-ceEEEEEee-ecCCCCEEEEEEecCCCChhHHHHHHHhcCcEEEEecccccchHHHHH
Q 001723 268 QSTDEPFALDAKYFTEMRVLN-REVRIVLEG-VDKFKNLIGSVFYPDGETAKDLAMELVENGLAKYIEWSANMMEEDAKR 345 (1020)
Q Consensus 268 ~~~~ep~~~eAk~f~~~~ll~-r~V~v~~~~-~d~~g~~~~~v~~~~g~~~~di~~~Ll~~GlA~~~~~~~~~~~~~~~~ 345 (1020)
....+|||.+|+.|++..|++ +.|++.+.. .|+|||++|+|+ .+|. |++.+||++|||+++. +. ....
T Consensus 83 ~~~~~~~G~~A~~~l~~~l~~~~~v~~~~~~~~d~y~R~la~v~-~~~~---~v~~~lV~~G~A~~~~---~~---~~~~ 152 (192)
T COG1525 83 GGKSQPCGEEAREFLRNLLLGRRTVECDLADRKDRYGRLLAYVT-VDGT---DVNLELVKEGLARVYY---NS---EYGG 152 (192)
T ss_pred cccccchHHHHHHHHHHHhcCCceEEEecCCcccCCCcEEEEEE-ECCE---EHHHHHHhCCCEEEec---cc---cchH
Confidence 135899999999999999996 888888888 999999999999 4554 5999999999999987 11 1224
Q ss_pred HHHHHHHHHHHhccccccCC
Q 001723 346 RLKAADLQAKKTRLRMWTNY 365 (1020)
Q Consensus 346 ~l~~ae~~Ak~~~~g~W~~~ 365 (1020)
.|.+||+.||+.++|||+..
T Consensus 153 ~~~~ae~~Ar~~~~GiW~~~ 172 (192)
T COG1525 153 EYAEAEEEARKRRLGIWSDD 172 (192)
T ss_pred HHHHHHHHHHHcccCccCCC
Confidence 89999999999999999985
No 14
>smart00333 TUDOR Tudor domain. Domain of unknown function present in several RNA-binding proteins. 10 copies in the Drosophila Tudor protein. Initial proposal that the survival motor neuron gene product contain a Tudor domain are corroborated by more recent database search techniques such as PSI-BLAST (unpublished).
Probab=99.27 E-value=7.1e-12 Score=105.05 Aligned_cols=56 Identities=43% Similarity=0.785 Sum_probs=51.2
Q ss_pred CCcCCCeEEEEEcCCCcEEEEEEEeeccccccccCCEEEEEEEecCCceeecCCCcccCCccc
Q 001723 809 NPKKGEIVLAQFSADNSWNRAMIVNAPREKVESVNDKFEVFYIDYGNQELVPYNKLRPIDPSL 871 (1020)
Q Consensus 809 ~p~~G~~c~A~fs~D~~WYRA~V~~~~~~~~~~~~~~v~V~fVDyGn~e~V~~~~Lr~Lp~~f 871 (1020)
.+++|++|+|+| .|+.||||+|+++. .++.+.|+|+|||+.+.|+.++||+||+.+
T Consensus 2 ~~~~G~~~~a~~-~d~~wyra~I~~~~------~~~~~~V~f~D~G~~~~v~~~~l~~l~~~~ 57 (57)
T smart00333 2 TFKVGDKVAARW-EDGEWYRARIIKVD------GEQLYEVFFIDYGNEEVVPPSDLRPLPEEL 57 (57)
T ss_pred CCCCCCEEEEEe-CCCCEEEEEEEEEC------CCCEEEEEEECCCccEEEeHHHeecCCCCC
Confidence 478999999999 89999999999995 338999999999999999999999998753
No 15
>cd04508 TUDOR Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to symmetrically dimethylated arginines of arginine-glycine (RG) rich sequences found in the C-terminal tails of Sm proteins. The SMN protein is linked to spinal muscular atrophy. Another example is the tandem tudor domains of 53BP1, which bind to histone H4 specifically dimethylated at Lys20 (H4-K20me2). 53BP1 is a key transducer of the DNA damage checkpoint signal.
Probab=99.25 E-value=7.5e-12 Score=101.10 Aligned_cols=48 Identities=48% Similarity=0.946 Sum_probs=44.3
Q ss_pred CCeEEEEEcCCCcEEEEEEEeeccccccccCCEEEEEEEecCCceeecCCCccc
Q 001723 813 GEIVLAQFSADNSWNRAMIVNAPREKVESVNDKFEVFYIDYGNQELVPYNKLRP 866 (1020)
Q Consensus 813 G~~c~A~fs~D~~WYRA~V~~~~~~~~~~~~~~v~V~fVDyGn~e~V~~~~Lr~ 866 (1020)
|++|+|+|++|+.||||+|+++. .+..+.|+|+||||.+.|+.++|++
T Consensus 1 G~~c~a~~~~d~~wyra~V~~~~------~~~~~~V~f~DyG~~~~v~~~~l~~ 48 (48)
T cd04508 1 GDLCLAKYSDDGKWYRAKITSIL------SDGKVEVFFVDYGNTEVVPLSDLRP 48 (48)
T ss_pred CCEEEEEECCCCeEEEEEEEEEC------CCCcEEEEEEcCCCcEEEeHHHcCC
Confidence 78999999989999999999995 4789999999999999999998874
No 16
>KOG2279 consensus Kinase anchor protein AKAP149, contains KH and Tudor RNA-binding domains [Signal transduction mechanisms]
Probab=98.97 E-value=4.2e-10 Score=128.24 Aligned_cols=190 Identities=16% Similarity=0.108 Sum_probs=143.5
Q ss_pred CCCccEEEEEEEEEecCCeEEEEEcCc---hhHHHHHHHHHHHHhcCCCCCC-CCCCcCCCeEEEEEcCCCcEEEEEEEe
Q 001723 758 GKQKEVLKVVVTEILGGGKFYVQQVGD---QKVASVQQQLASLNLQEAPVIG-AFNPKKGEIVLAQFSADNSWNRAMIVN 833 (1020)
Q Consensus 758 ~~~~~~~~V~Vt~V~sp~~FyvQ~~~~---~~L~~L~~~L~~~~~~~~~~~~-~~~p~~G~~c~A~fs~D~~WYRA~V~~ 833 (1020)
++.+..+.|.|...++.++||+|.... ..|..|-..|..+|......+. +..+..+-+|+|. ..++.|.||.+++
T Consensus 401 fpd~i~cev~V~s~i~a~hlf~pq~tip~F~aLrsldqwm~l~y~eq~t~pelP~P~~~t~~sAAp-~g~~awpra~lvd 479 (608)
T KOG2279|consen 401 FPDNIDCEVKVLSAIRADHLFLPQQTIPCFLALRSLDQWMELAYDEQLTHPELPKPLVATISSAAP-TGISAWPRAYLVD 479 (608)
T ss_pred cCCCceEEeeeehhhcccceeeccccchhhhhhhhHHHHHHHHhhcccCCcCCCcchhhceeeecc-cCCCCccceEEEe
Confidence 445678899999999999999999875 4566677777777763322211 2335667888887 4678999999999
Q ss_pred eccccccccCCEEEEEEEecCCceeecCCCcccCCccccCCCCceEEEEecceecCCCCCCChHHHHHHHhhccccCCCE
Q 001723 834 APREKVESVNDKFEVFYIDYGNQELVPYNKLRPIDPSLSSTPPLAQLCSLAYIKIPALEDEYGPEAAEFLNEHTYNSSNE 913 (1020)
Q Consensus 834 ~~~~~~~~~~~~v~V~fVDyGn~e~V~~~~Lr~Lp~~f~~lP~qAi~c~LagV~p~~~~~~Ws~eA~~~f~~lllv~~k~ 913 (1020)
-.. ..+..+.+.||||| +..+...+||++-.+|.+||+|+.+..|+.|.|......|+++|...|.. ++.++.
T Consensus 480 ~~d----et~l~I~~~~VdyG-Y~~~~~ddlrqiRsd~~slPfq~tEv~l~~v~pl~~t~~~Spea~h~~s~--Msi~~~ 552 (608)
T KOG2279|consen 480 TSD----ETKLDIGLELVDYG-YAIELPDDLRQIRSDPDSLPFQATEVDLSLVTPLTETKKSSPEATHTLSC--MSISEA 552 (608)
T ss_pred ccC----cccchhhheeeccc-ccccchhhhhhhhcccccCCcccchhhHhheeccCCCcCcCcccccchhh--hhhhhh
Confidence 752 12334899999999 89999999999999999999999999999999998888999999999999 665554
Q ss_pred EEEEEEEEeCCCCcccCCCCcceEEEEEEecC------CCCcHHHHHHHcCCeeeec
Q 001723 914 FRALVEERDSSGGKLKGQGTGTLLHVTLVAVD------AEISINTLMVQEGLARVER 964 (1020)
Q Consensus 914 l~a~V~~~~~~g~~i~~~~~~~~~~V~L~d~~------~~~sIne~LV~~GlA~~~~ 964 (1020)
..+.-+....+ ..+.++.||... +..-+++.|++.|+|....
T Consensus 553 a~~~~v~~~~d---------t~Lp~~ql~s~~~D~k~~n~vk~~q~l~ecGla~~ad 600 (608)
T KOG2279|consen 553 ASMSGVDNLED---------TYLPGSQLFSLLSDLKCCNSVKHAQPLNECGLASVAD 600 (608)
T ss_pred hhhhccccccc---------ccchhhhhhhhhccccccchhhhhhhhhhcccccccc
Confidence 44443332221 124455555431 2456899999999998864
No 17
>smart00743 Agenet Tudor-like domain present in plant sequences. Domain in plant sequences with possible chromatin-associated functions.
Probab=98.44 E-value=3.9e-07 Score=77.53 Aligned_cols=55 Identities=29% Similarity=0.404 Sum_probs=50.7
Q ss_pred CcCCCeEEEEEcCCCcEEEEEEEeeccccccccCCEEEEEEEe--cCCceeecCCCcccCCcc
Q 001723 810 PKKGEIVLAQFSADNSWNRAMIVNAPREKVESVNDKFEVFYID--YGNQELVPYNKLRPIDPS 870 (1020)
Q Consensus 810 p~~G~~c~A~fs~D~~WYRA~V~~~~~~~~~~~~~~v~V~fVD--yGn~e~V~~~~Lr~Lp~~ 870 (1020)
.++|+.|-|.|++++.||||+|+++. .++.+.|+|.| +|+.+.++.++||++|+.
T Consensus 3 ~~~G~~Ve~~~~~~~~W~~a~V~~~~------~~~~~~V~~~~~~~~~~e~v~~~~LRp~~~w 59 (61)
T smart00743 3 FKKGDRVEVFSKEEDSWWEAVVTKVL------GDGKYLVRYLTESEPLKETVDWSDLRPHPPW 59 (61)
T ss_pred cCCCCEEEEEECCCCEEEEEEEEEEC------CCCEEEEEECCCCcccEEEEeHHHcccCCCC
Confidence 67999999999999999999999995 46889999999 999999999999999863
No 18
>PF06003 SMN: Survival motor neuron protein (SMN); InterPro: IPR010304 This family consists of several eukaryotic survival motor neuron (SMN) proteins. The Survival of Motor Neurons (SMN) protein, the product of the spinal muscular atrophy-determining gene, is part of a large macromolecular complex (SMN complex) that functions in the assembly of spliceosomal small nuclear ribonucleoproteins (snRNPs). The SMN complex functions as a specificity factor essential for the efficient assembly of Sm proteins on U snRNAs and likely protects cells from illicit, and potentially deleterious, non-specific binding of Sm proteins to RNAs.; GO: 0003723 RNA binding, 0006397 mRNA processing, 0005634 nucleus, 0005737 cytoplasm; PDB: 1MHN_A 4A4G_A 3S6N_M 4A4E_A 1G5V_A 4A4H_A 4A4F_A 2D9T_A.
Probab=98.04 E-value=4.7e-06 Score=91.60 Aligned_cols=58 Identities=26% Similarity=0.390 Sum_probs=47.7
Q ss_pred CCCcCCCeEEEEEcCCCcEEEEEEEeeccccccccCCEEEEEEEecCCceeecCCCcccCCcc
Q 001723 808 FNPKKGEIVLAQFSADNSWNRAMIVNAPREKVESVNDKFEVFYIDYGNQELVPYNKLRPIDPS 870 (1020)
Q Consensus 808 ~~p~~G~~c~A~fs~D~~WYRA~V~~~~~~~~~~~~~~v~V~fVDyGn~e~V~~~~Lr~Lp~~ 870 (1020)
...++|+.|.|.|++|++||-|.|..|.. ..+++.|.|.+|||.+.|.+++|++....
T Consensus 67 ~~WkvGd~C~A~~s~Dg~~Y~A~I~~i~~-----~~~~~~V~f~gYgn~e~v~l~dL~~~~~~ 124 (264)
T PF06003_consen 67 KKWKVGDKCMAVYSEDGQYYPATIESIDE-----EDGTCVVVFTGYGNEEEVNLSDLKPSEGD 124 (264)
T ss_dssp T---TT-EEEEE-TTTSSEEEEEEEEEET-----TTTEEEEEETTTTEEEEEEGGGEEETT--
T ss_pred cCCCCCCEEEEEECCCCCEEEEEEEEEcC-----CCCEEEEEEcccCCeEeeehhhhcccccc
Confidence 56999999999999999999999999963 56799999999999999999999999765
No 19
>KOG2279 consensus Kinase anchor protein AKAP149, contains KH and Tudor RNA-binding domains [Signal transduction mechanisms]
Probab=96.38 E-value=0.0011 Score=76.95 Aligned_cols=186 Identities=16% Similarity=0.160 Sum_probs=130.1
Q ss_pred CCccEEEEEEEEEecCCeEEEEEcCc--hhHHHHHHHHHHHHhcCCCCCCCCCCcCCCeEEEEEcCCCcEEEEEEEeecc
Q 001723 759 KQKEVLKVVVTEILGGGKFYVQQVGD--QKVASVQQQLASLNLQEAPVIGAFNPKKGEIVLAQFSADNSWNRAMIVNAPR 836 (1020)
Q Consensus 759 ~~~~~~~V~Vt~V~sp~~FyvQ~~~~--~~L~~L~~~L~~~~~~~~~~~~~~~p~~G~~c~A~fs~D~~WYRA~V~~~~~ 836 (1020)
..++++.++.+.-.-+.+||.|...+ -.++.+..+...++.+..... .....++..++...-.+-||++.+....
T Consensus 313 ~~gey~s~yssasn~~~hi~t~pyt~~v~~~qic~~egkqh~~n~vl~m--l~~~~p~~~f~eLnl~~~~~p~lps~al- 389 (608)
T KOG2279|consen 313 HAGEYLSVYSSASNHPNHIWTQPYTSRVLQLQICVNEGKQHYENSVLEM--LTVHVPDIVFAELNLNGSWYPALPSGAL- 389 (608)
T ss_pred hhhhhhhhhhhccCccceEEeccccchhhhhhhheecchhHHHHHHHhh--hhccCCccccccccccCccCcccCcccc-
Confidence 45788888888888899999999875 234555566666665533211 1233444444444447889999988765
Q ss_pred ccccccCCEEEEEEEecCCceeecCCCcccCCccccCCCCceEEEEecceecCCCCCCChHHHHHHHhhccccCCCEEEE
Q 001723 837 EKVESVNDKFEVFYIDYGNQELVPYNKLRPIDPSLSSTPPLAQLCSLAYIKIPALEDEYGPEAAEFLNEHTYNSSNEFRA 916 (1020)
Q Consensus 837 ~~~~~~~~~v~V~fVDyGn~e~V~~~~Lr~Lp~~f~~lP~qAi~c~LagV~p~~~~~~Ws~eA~~~f~~lllv~~k~l~a 916 (1020)
..-....+++||+....+....+..|..+++.+|.+++.|.++ +. .-..|...+..---.+ -..-+.|.+
T Consensus 390 -----~~L~td~~wL~fpd~i~cev~V~s~i~a~hlf~pq~tip~F~a-Lr---sldqwm~l~y~eq~t~-pelP~P~~~ 459 (608)
T KOG2279|consen 390 -----ENLNTDLYWLDFPDNIDCEVKVLSAIRADHLFLPQQTIPCFLA-LR---SLDQWMELAYDEQLTH-PELPKPLVA 459 (608)
T ss_pred -----cccCCcceEEEcCCCceEEeeeehhhcccceeeccccchhhhh-hh---hHHHHHHHHhhcccCC-cCCCcchhh
Confidence 4556678899999999999999999999999999999999998 22 2356876665521110 122356777
Q ss_pred EEEEEeCCCCcccCCCCcceEEEEEEecC--CCCcHHHHHHHcCCeeeec
Q 001723 917 LVEERDSSGGKLKGQGTGTLLHVTLVAVD--AEISINTLMVQEGLARVER 964 (1020)
Q Consensus 917 ~V~~~~~~g~~i~~~~~~~~~~V~L~d~~--~~~sIne~LV~~GlA~~~~ 964 (1020)
++...-+.|. +....+.|+++. .+.+|...||..||++..+
T Consensus 460 t~~sAAp~g~-------~awpra~lvd~~det~l~I~~~~VdyGY~~~~~ 502 (608)
T KOG2279|consen 460 TISSAAPTGI-------SAWPRAYLVDTSDETKLDIGLELVDYGYAIELP 502 (608)
T ss_pred ceeeecccCC-------CCccceEEEeccCcccchhhheeecccccccch
Confidence 7776554432 345667787763 4678999999999887754
No 20
>PF09465 LBR_tudor: Lamin-B receptor of TUDOR domain; InterPro: IPR019023 The Lamin-B receptor is a chromatin and lamin binding protein in the inner nuclear membrane. It is one of the integral inner nuclear envelope membrane proteins responsible for targeting nuclear membranes to chromatin, being a downstream effector of Ran, a small Ras-like nuclear GTPase which regulates NE assembly. Lamin-B receptor interacts with importin beta, a Ran-binding protein, thereby directly contributing to the fusion of membrane vesicles and the formation of the nuclear envelope []. ; PDB: 2L8D_A 2DIG_A.
Probab=96.21 E-value=0.017 Score=47.44 Aligned_cols=52 Identities=17% Similarity=0.382 Sum_probs=40.9
Q ss_pred CCCcCCCeEEEEEcCCCcEEEEEEEeeccccccccCCEEEEEEEecCCceeecCCCcc
Q 001723 808 FNPKKGEIVLAQFSADNSWNRAMIVNAPREKVESVNDKFEVFYIDYGNQELVPYNKLR 865 (1020)
Q Consensus 808 ~~p~~G~~c~A~fs~D~~WYRA~V~~~~~~~~~~~~~~v~V~fVDyGn~e~V~~~~Lr 865 (1020)
.....|+.+.++++.++.||.|+|++.+. ....+.|.|-| |....++.++|+
T Consensus 4 ~k~~~Ge~V~~rWP~s~lYYe~kV~~~d~-----~~~~y~V~Y~D-Gtel~lke~dik 55 (55)
T PF09465_consen 4 RKFAIGEVVMVRWPGSSLYYEGKVLSYDS-----KSDRYTVLYED-GTELELKENDIK 55 (55)
T ss_dssp SSS-SS-EEEEE-TTTS-EEEEEEEEEET-----TTTEEEEEETT-S-EEEEECCCEE
T ss_pred ccccCCCEEEEECCCCCcEEEEEEEEecc-----cCceEEEEEcC-CCEEEecccccC
Confidence 34678999999999999999999999863 78999999999 998888877763
No 21
>PF05641 Agenet: Agenet domain; InterPro: IPR008395 This domain is related to the TUDOR domain IPR008191 from INTERPRO []. The function of the agenet domain is unknown. This signature matches one of the two Agenet domains in the FMR proteins [].; GO: 0003723 RNA binding; PDB: 2BKD_N 3O8V_A 3KUF_A 3H8Z_A.
Probab=94.63 E-value=0.061 Score=46.85 Aligned_cols=54 Identities=31% Similarity=0.505 Sum_probs=35.5
Q ss_pred cCCCeEEEEEcCC---CcEEEEEEEeeccccccccCCEEEEEEEecCC--------ceeecCCCcccCCcc
Q 001723 811 KKGEIVLAQFSAD---NSWNRAMIVNAPREKVESVNDKFEVFYIDYGN--------QELVPYNKLRPIDPS 870 (1020)
Q Consensus 811 ~~G~~c~A~fs~D---~~WYRA~V~~~~~~~~~~~~~~v~V~fVDyGn--------~e~V~~~~Lr~Lp~~ 870 (1020)
++|+.+=+...++ +.||+|.|++.. .+.++.|.|-|+-. .+.|+...|||.|+.
T Consensus 2 ~~G~~VEV~s~e~g~~gaWf~a~V~~~~------~~~~~~V~Y~~~~~~~~~~~~l~e~V~~~~iRP~pP~ 66 (68)
T PF05641_consen 2 KKGDEVEVSSDEDGFRGAWFPATVLKEN------GDDKYLVEYDDLPDEDGESPPLKEWVDARRIRPCPPP 66 (68)
T ss_dssp -TT-EEEEEE-SBTT--EEEEEEEEEEE------TT-EEEEEETT-SS--------EEEEEGGGEEE----
T ss_pred CCCCEEEEEEcCCCCCcEEEEEEEEEeC------CCcEEEEEECCcccccccccccEEEechheEECcCcC
Confidence 5678777776554 469999999985 33499999976653 578899999999874
No 22
>PF11717 Tudor-knot: RNA binding activity-knot of a chromodomain ; PDB: 2EKO_A 2RO0_A 2RNZ_A 1WGS_A 3E9G_A 3E9F_A 2K3X_A 2K3Y_A 2EFI_A 2F5K_F ....
Probab=91.54 E-value=0.41 Score=39.89 Aligned_cols=51 Identities=27% Similarity=0.582 Sum_probs=39.6
Q ss_pred cCCCeEEEEEcCCCcEEEEEEEeeccccccccCCEEEEEEEecCCc--eeecCCCcc
Q 001723 811 KKGEIVLAQFSADNSWNRAMIVNAPREKVESVNDKFEVFYIDYGNQ--ELVPYNKLR 865 (1020)
Q Consensus 811 ~~G~~c~A~fs~D~~WYRA~V~~~~~~~~~~~~~~v~V~fVDyGn~--e~V~~~~Lr 865 (1020)
.+|+.|.|.+ .++.||.|+|+++.. ..+...+-|.|..|... +.|+.++|+
T Consensus 2 ~vG~~v~~~~-~~~~~y~A~I~~~r~---~~~~~~YyVHY~g~nkR~DeWV~~~~i~ 54 (55)
T PF11717_consen 2 EVGEKVLCKY-KDGQWYEAKILDIRE---KNGEPEYYVHYQGWNKRLDEWVPESRIR 54 (55)
T ss_dssp -TTEEEEEEE-TTTEEEEEEEEEEEE---CTTCEEEEEEETTSTGCC-EEEETTTEE
T ss_pred CcCCEEEEEE-CCCcEEEEEEEEEEe---cCCCEEEEEEcCCCCCCceeeecHHHcc
Confidence 5799999998 689999999999853 12346889999988765 678887765
No 23
>KOG4327 consensus mRNA splicing protein SMN (survival motor neuron) [RNA processing and modification]
Probab=91.29 E-value=0.13 Score=52.82 Aligned_cols=54 Identities=28% Similarity=0.293 Sum_probs=46.6
Q ss_pred CCCcCCCeEEEEEcCCCcEEEEEEEeeccccccccCCEEEEEEEecCCceeecCCCccc
Q 001723 808 FNPKKGEIVLAQFSADNSWNRAMIVNAPREKVESVNDKFEVFYIDYGNQELVPYNKLRP 866 (1020)
Q Consensus 808 ~~p~~G~~c~A~fs~D~~WYRA~V~~~~~~~~~~~~~~v~V~fVDyGn~e~V~~~~Lr~ 866 (1020)
...++|+.|.|.|.++++.|=|.|..+.- ..+...|.|+=|||.+.|.+++|-+
T Consensus 66 ~~wKVgdkc~A~Y~e~g~~ypatidsi~~-----~~~tcvv~ylgygnr~Ev~lsDLl~ 119 (218)
T KOG4327|consen 66 QQWKVGDKCSAIYSEDGCIYPATIDSIDF-----KRETCVVVYLGYGNREEVNLSDLLS 119 (218)
T ss_pred hhheecceeeeeeecCcccccceeccccc-----ccCceEEEEEeecchhhhhHHHhcc
Confidence 46899999999999999999999998852 4566669999999999999888754
No 24
>PF15057 DUF4537: Domain of unknown function (DUF4537)
Probab=90.36 E-value=0.62 Score=45.65 Aligned_cols=105 Identities=18% Similarity=0.327 Sum_probs=71.5
Q ss_pred CccEEEEEEEEEecCCeEEEEEcCchhHHHHHHHHHHHHhcCCCCCCCCCCcCCCeEEEEEcCCC-cEEEEEEEeecccc
Q 001723 760 QKEVLKVVVTEILGGGKFYVQQVGDQKVASVQQQLASLNLQEAPVIGAFNPKKGEIVLAQFSADN-SWNRAMIVNAPREK 838 (1020)
Q Consensus 760 ~~~~~~V~Vt~V~sp~~FyvQ~~~~~~L~~L~~~L~~~~~~~~~~~~~~~p~~G~~c~A~fs~D~-~WYRA~V~~~~~~~ 838 (1020)
.|-++..+|....+..+|.|+..+...-......+-... ... ...+++||.|+|+...++ .|+-|+|+.... .
T Consensus 11 DG~YY~GtV~~~~~~~~~lV~f~~~~~~~v~~~~iI~~~----~~~-~~~L~~GD~VLA~~~~~~~~Y~Pg~V~~~~~-~ 84 (124)
T PF15057_consen 11 DGFYYPGTVKKCVSSGQFLVEFDDGDTQEVPISDIIALS----DAM-RHSLQVGDKVLAPWEPDDCRYGPGTVIAGPE-R 84 (124)
T ss_pred CCcEEeEEEEEccCCCEEEEEECCCCEEEeChHHeEEcc----Ccc-cCcCCCCCEEEEecCcCCCEEeCEEEEECcc-c
Confidence 366888889888899999999955311111111111111 111 245899999999975443 588899997421 1
Q ss_pred ccccCCEEEEEEEecCCceeecCCCcccCCccc
Q 001723 839 VESVNDKFEVFYIDYGNQELVPYNKLRPIDPSL 871 (1020)
Q Consensus 839 ~~~~~~~v~V~fVDyGn~e~V~~~~Lr~Lp~~f 871 (1020)
....+..+.|.|.| |....|+...++.||+.+
T Consensus 85 ~~~~~~~~~V~f~n-g~~~~vp~~~~~~I~~~~ 116 (124)
T PF15057_consen 85 RASEDKEYTVRFYN-GKTAKVPRGEVIWISPSY 116 (124)
T ss_pred cccCCceEEEEEEC-CCCCccchhhEEECCHHH
Confidence 11268899999999 788999999999998754
No 25
>KOG3026 consensus Splicing factor SPF30 [RNA processing and modification]
Probab=89.38 E-value=0.49 Score=50.18 Aligned_cols=56 Identities=23% Similarity=0.304 Sum_probs=50.5
Q ss_pred CCcCCCeEEEEEcCCCcEEEEEEEeeccccccccCCEEEEEEEecCCceeecCCCcccCCc
Q 001723 809 NPKKGEIVLAQFSADNSWNRAMIVNAPREKVESVNDKFEVFYIDYGNQELVPYNKLRPIDP 869 (1020)
Q Consensus 809 ~p~~G~~c~A~fs~D~~WYRA~V~~~~~~~~~~~~~~v~V~fVDyGn~e~V~~~~Lr~Lp~ 869 (1020)
...+|+-|.|.|++|+.||=|.|..+.. ....+.|.|--||+...++..+||..+.
T Consensus 90 ~w~vg~K~~A~~~ddg~~y~AtIe~ita-----~~~~~ai~f~s~~~a~~t~~a~lr~~e~ 145 (262)
T KOG3026|consen 90 GWKVGDKVQAVFSDDGQIYDATIEHITA-----MEGTVAIIFASYGTAPSTYAARLRSPEE 145 (262)
T ss_pred ccccCCEEEEeecCCCceEEeehhhccC-----CCCceeEEEeeccccccccHhhccCcch
Confidence 5889999999999999999999999852 4689999999999999999999998764
No 26
>PF15057 DUF4537: Domain of unknown function (DUF4537)
Probab=88.50 E-value=1.1 Score=43.94 Aligned_cols=51 Identities=22% Similarity=0.363 Sum_probs=44.4
Q ss_pred CCeEEEEEcCCCcEEEEEEEeeccccccccCCEEEEEEEecCCceeecCCCcccCCcc
Q 001723 813 GEIVLAQFSADNSWNRAMIVNAPREKVESVNDKFEVFYIDYGNQELVPYNKLRPIDPS 870 (1020)
Q Consensus 813 G~~c~A~fs~D~~WYRA~V~~~~~~~~~~~~~~v~V~fVDyGn~e~V~~~~Lr~Lp~~ 870 (1020)
|+-++|+...||.||||.|.+.. ....+.|.| |.|....|+..++-++...
T Consensus 1 g~~VlAR~~~DG~YY~GtV~~~~------~~~~~lV~f-~~~~~~~v~~~~iI~~~~~ 51 (124)
T PF15057_consen 1 GQKVLARREEDGFYYPGTVKKCV------SSGQFLVEF-DDGDTQEVPISDIIALSDA 51 (124)
T ss_pred CCeEEEeeCCCCcEEeEEEEEcc------CCCEEEEEE-CCCCEEEeChHHeEEccCc
Confidence 67799999999999999999985 678899999 8899999999888877643
No 27
>KOG3038 consensus Histone acetyltransferase SAGA associated factor SGF29 [General function prediction only]
Probab=85.39 E-value=2.8 Score=45.39 Aligned_cols=90 Identities=18% Similarity=0.286 Sum_probs=56.1
Q ss_pred CCccEEEEEEEEEecCCeEEEEEcCc--hhHHHHHH----HHHHHHhcCCCCCCCCCCcCCCeEEEEEcCCCcEEEEEEE
Q 001723 759 KQKEVLKVVVTEILGGGKFYVQQVGD--QKVASVQQ----QLASLNLQEAPVIGAFNPKKGEIVLAQFSADNSWNRAMIV 832 (1020)
Q Consensus 759 ~~~~~~~V~Vt~V~sp~~FyvQ~~~~--~~L~~L~~----~L~~~~~~~~~~~~~~~p~~G~~c~A~fs~D~~WYRA~V~ 832 (1020)
..++++.+.|.++.+.+..=|...+. .+++.+.. .|...+....|. ......+|..++|.|.+--+||||.|+
T Consensus 143 ~dg~WIlaeVv~~~~~~~ye~ev~D~Epk~d~~g~r~~~yklp~~~~~p~p~-p~~~fpp~~~VLA~YP~TTcFY~aiVh 221 (264)
T KOG3038|consen 143 EDGDWILAEVVKVSSETRYEFEVVDPEPKKDEVGNRGQLYKLPRWKLNPIPP-PTALFPPGTIVLAVYPGTTCFYKAIVH 221 (264)
T ss_pred CCCCEEEEEEEEEecCCceEeEecCCCccccccccccceecccHhhcCCCCC-CccCCCCCCEEEEEcCCcceeeeeEee
Confidence 34678888888888777533444442 11222211 012222222111 234577899999999999999999999
Q ss_pred eeccccccccCCEEEEEEEec
Q 001723 833 NAPREKVESVNDKFEVFYIDY 853 (1020)
Q Consensus 833 ~~~~~~~~~~~~~v~V~fVDy 853 (1020)
+.++ .....+.|+|.|=
T Consensus 222 ~tp~----d~s~~y~vlffD~ 238 (264)
T KOG3038|consen 222 STPR----DGSCDYYVLFFDD 238 (264)
T ss_pred cCCC----CCCCcceeeeecC
Confidence 9874 2456788888883
No 28
>PF07039 DUF1325: SGF29 tudor-like domain; InterPro: IPR010750 SAGA-associated factor 29 is involved in transcriptional regulation, probably through association with histone acetyltransferase (HAT) complexes like the TFTC-HAT or STAGA complexes. It also may be involved in MYC-mediated oncogenic transformation. It is a component of the ATAC complex, which is a complex with histone acetyltransferase activity on histones H3 and H4 []. This entry represents a domain found in yeast and human SAGA-associated factor 29 proteins that is related to the tudor domain. ; PDB: 3MP6_A 3MP1_A 3MP8_A 3MET_B 3ME9_A 3MEU_B 3MEA_A 3MEV_B 3LX7_A 3MEW_A.
Probab=63.62 E-value=11 Score=37.19 Aligned_cols=87 Identities=17% Similarity=0.281 Sum_probs=55.7
Q ss_pred ccEEEEEEEEEecCC-eEEEEEcCchhHHHHHHHHHHHHhc-----CCCC------CCCCCCcCCCeEEEEEcCCCcEEE
Q 001723 761 KEVLKVVVTEILGGG-KFYVQQVGDQKVASVQQQLASLNLQ-----EAPV------IGAFNPKKGEIVLAQFSADNSWNR 828 (1020)
Q Consensus 761 ~~~~~V~Vt~V~sp~-~FyvQ~~~~~~L~~L~~~L~~~~~~-----~~~~------~~~~~p~~G~~c~A~fs~D~~WYR 828 (1020)
++++.+.|..+.+-+ .+-|+..+... . .+.+... ..|. .......+|..|+|.|.+--+|||
T Consensus 17 ~~WIla~Vv~~~~~~~rYeV~D~d~~~----~--~~~~~~~~~~iIPLP~~~~~~~~~~~~f~~g~~VLAlYP~TT~FY~ 90 (130)
T PF07039_consen 17 EEWILAEVVKYNSDGNRYEVEDPDPEE----E--KKRYKLSRKQIIPLPKKAPPDTDPLAEFPKGTKVLALYPDTTCFYP 90 (130)
T ss_dssp CEEEEEEEEEEETTTTEEEEEETTTCT----T--TEEEEEEGGGEEEE-SB--TTT-GGGS--TT-EEEEE-TTSSEEEE
T ss_pred CCEEEEEEEEEeCCCCEEEEecCCCCC----C--CceEEeCHHHEEECCCccCCCCCchhhCCCCCEEEEECCCCceEEE
Confidence 678899888888766 88899987431 0 0011110 0011 112456789999999998889999
Q ss_pred EEEEeeccccccccCCEEEEEEEecCCce
Q 001723 829 AMIVNAPREKVESVNDKFEVFYIDYGNQE 857 (1020)
Q Consensus 829 A~V~~~~~~~~~~~~~~v~V~fVDyGn~e 857 (1020)
|.|..... ...+.+.+.|-|-....
T Consensus 91 A~V~~~p~----~~~~~y~l~Fedd~~~~ 115 (130)
T PF07039_consen 91 ATVVSPPK----KKSGEYKLKFEDDEDAD 115 (130)
T ss_dssp EEEEEE-S----STTS-EEEEECTTTSTT
T ss_pred EEEEeCCC----CCCCcEEEEEeCCCCcC
Confidence 99999842 25789999999988764
No 29
>cd05162 PWWP The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes. The function of the PWWP domain is still not known precisely; however, based on the fact that other regions of PWWP-domain proteins are responsible for nuclear localization and DNA-binding, is likely that the PWWP domain acts as a site for protein-protein binding interactions, influencing chromatin remodeling and thereby regulating transcriptional processes. Some PWWP-domain proteins have been linked to cancer or other diseases; some are known to function as growth factors.
Probab=55.64 E-value=18 Score=32.82 Aligned_cols=62 Identities=21% Similarity=0.442 Sum_probs=47.5
Q ss_pred cCCCeEEEEEcCCCcEEEEEEEeeccccc----cccCCEEEEEEEecCCceeecCCCcccCCccccC
Q 001723 811 KKGEIVLAQFSADNSWNRAMIVNAPREKV----ESVNDKFEVFYIDYGNQELVPYNKLRPIDPSLSS 873 (1020)
Q Consensus 811 ~~G~~c~A~fs~D~~WYRA~V~~~~~~~~----~~~~~~v~V~fVDyGn~e~V~~~~Lr~Lp~~f~~ 873 (1020)
.+|++|-|+.. .--|+-|+|++...... ....+.+.|+|.+-.....|+.++|.++...+..
T Consensus 2 ~~GdlVwaK~~-g~pwWPa~V~~~~~~~~~~~~~~~~~~~~V~Ffg~~~~~wv~~~~l~pf~~~~~~ 67 (87)
T cd05162 2 RPGDLVWAKMK-GYPWWPALVVDPPKDSKKAKKKAKEGKVLVLFFGDKTFAWVGAERLKPFTEHKES 67 (87)
T ss_pred CCCCEEEEeCC-CCCCCCEEEccccccchhhhccCCCCEEEEEEeCCCcEEEeCccceeeccchHHh
Confidence 57999999984 45799999998742000 0124789999999778888999999999877644
No 30
>PLN00104 MYST -like histone acetyltransferase; Provisional
Probab=49.98 E-value=27 Score=41.41 Aligned_cols=58 Identities=16% Similarity=0.334 Sum_probs=43.6
Q ss_pred CCCcCCCeEEEEEcCCCcEEEEEEEeecccc-ccccCCEEEEEEEecCCc--eeecCCCcc
Q 001723 808 FNPKKGEIVLAQFSADNSWNRAMIVNAPREK-VESVNDKFEVFYIDYGNQ--ELVPYNKLR 865 (1020)
Q Consensus 808 ~~p~~G~~c~A~fs~D~~WYRA~V~~~~~~~-~~~~~~~v~V~fVDyGn~--e~V~~~~Lr 865 (1020)
....+|+.|.|....|+.||.|.|+++.... .......+-|+|+.|=.. +.|+.++|.
T Consensus 52 ~~~~VGekVla~~~~Dg~~~~A~VI~~R~~~~~~~~~~~YYVHY~g~nrRlDEWV~~~rLd 112 (450)
T PLN00104 52 LPLEVGTRVMCRWRFDGKYHPVKVIERRRGGSGGPNDYEYYVHYTEFNRRLDEWVKLEQLD 112 (450)
T ss_pred ceeccCCEEEEEECCCCCEEEEEEEEEeccCCCCCCCceEEEEEecCCccHhhccCHhhcc
Confidence 3478999999999889999999999985311 001224689999987777 778777774
No 31
>cd05834 HDGF_related The PWWP domain is an essential part of the Hepatoma Derived Growth Factor (HDGF) family of proteins, and is necessary for DNA binding by HDGF. This family of endogenous nuclear-targeted mitogens includes HRP (HDGF-related proteins 1, 2, 3, 4, or HPR1, HPR2, HPR3, HPR4, respectively) and lens epithelium-derived growth factor, LEDGF. Members of the HDGF family have been linked to human diseases, and HDGF is a prognostic factor in several types of cancer. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.
Probab=47.54 E-value=25 Score=31.97 Aligned_cols=60 Identities=15% Similarity=0.207 Sum_probs=48.3
Q ss_pred CcCCCeEEEEEcCCCcEEEEEEEeeccccccccCCEEEEEEEecCCceeecCCCcccCCcccc
Q 001723 810 PKKGEIVLAQFSADNSWNRAMIVNAPREKVESVNDKFEVFYIDYGNQELVPYNKLRPIDPSLS 872 (1020)
Q Consensus 810 p~~G~~c~A~fs~D~~WYRA~V~~~~~~~~~~~~~~v~V~fVDyGn~e~V~~~~Lr~Lp~~f~ 872 (1020)
..+|+++-|+.. .--|.=|+|++.... ....+.+.|+|...+....|+.++|.++.+.+.
T Consensus 3 f~~GdlVwaK~k-Gyp~WPa~I~~~~~~--~~~~~~~~V~FfGt~~~a~v~~~~l~pf~~~~~ 62 (83)
T cd05834 3 FKAGDLVFAKVK-GYPAWPARVDEPEDW--KPPGKKYPVYFFGTHETAFLKPEDLFPYTENKK 62 (83)
T ss_pred CCCCCEEEEecC-CCCCCCEEEeccccc--CCCCCEEEEEEeCCCCEeEECHHHceecccchh
Confidence 578999999983 556999999987411 123689999999999999999999999987553
No 32
>smart00293 PWWP domain with conserved PWWP motif. conservation of Pro-Trp-Trp-Pro residues
Probab=47.48 E-value=33 Score=29.26 Aligned_cols=56 Identities=20% Similarity=0.435 Sum_probs=42.6
Q ss_pred cCCCeEEEEEcCCCcEEEEEEEeecccc-----ccccCCEEEEEEEecCCceeecCCCcccC
Q 001723 811 KKGEIVLAQFSADNSWNRAMIVNAPREK-----VESVNDKFEVFYIDYGNQELVPYNKLRPI 867 (1020)
Q Consensus 811 ~~G~~c~A~fs~D~~WYRA~V~~~~~~~-----~~~~~~~v~V~fVDyGn~e~V~~~~Lr~L 867 (1020)
++|+++.|+.. .--|.-|+|+...... .......+.|+|..=.....|+.++|.++
T Consensus 2 ~~GdlVwaK~~-G~p~WPa~V~~~~~~~~~~~~~~~~~~~~~V~Ffg~~~~awv~~~~l~p~ 62 (63)
T smart00293 2 KPGDLVWAKMK-GFPWWPALVVSPKETPDNIRKRKRFENLYPVLFFGDKDTAWISSSKLFPL 62 (63)
T ss_pred CCCCEEEEECC-CCCCCCeEEcCcccCChhHhhccCCCCEEEEEEeCCCCEEEECccceeeC
Confidence 57999999974 4479999999864100 01235789999998888888999999876
No 33
>PF09038 53-BP1_Tudor: Tumour suppressor p53-binding protein-1 Tudor; InterPro: IPR015125 This domain consist of ten beta-strands and a carboxy-terminal alpha-helix. The amino-terminal five beta-strands and the C-terminal five beta-strands adopt folds that are identical to each other. The domain is essential for the recruitment of proteins to double stranded breaks in DNA, which is mediated by interaction with methylated Lys 79 of histone H3 []. ; PDB: 3LGL_A 1XNI_B 3LGF_A 2G3R_A 2IG0_A 3LH0_A 1SSF_A.
Probab=41.90 E-value=56 Score=31.80 Aligned_cols=50 Identities=20% Similarity=0.235 Sum_probs=35.9
Q ss_pred cCCCeEEEEEcCCCcEEEEEEEeeccccccccCCEEEEEEEecCCceeecCCCcccC
Q 001723 811 KKGEIVLAQFSADNSWNRAMIVNAPREKVESVNDKFEVFYIDYGNQELVPYNKLRPI 867 (1020)
Q Consensus 811 ~~G~~c~A~fs~D~~WYRA~V~~~~~~~~~~~~~~v~V~fVDyGn~e~V~~~~Lr~L 867 (1020)
-+|.-|.|+++.++-||=++|+.-. .+.++.|.|=| |....|..++|-..
T Consensus 4 ~iG~rV~AkWS~n~yyY~G~I~~~~------~~~kykv~FdD-G~~~~v~~~div~~ 53 (122)
T PF09038_consen 4 FIGLRVFAKWSDNGYYYPGKITSDK------GKNKYKVLFDD-GYECRVLGKDIVVC 53 (122)
T ss_dssp STT-EEEEESSTTSEEEEEEEEEEE------TTTEEEEEETT-S-EEEEECCCEEEE
T ss_pred ccccEEEEEEccCCcccCceEeecC------CCCeEEEEecC-CccceeccCcEEEE
Confidence 3688999999955566899888742 78999999866 77666666665433
No 34
>cd05841 BS69_related The PWWP domain is part of BS69 protein, a nuclear protein that specifically binds adenoviral E1A and Epstein-Barr viral EBNA2 proteins, suppressing their transactivation functions. BS69 is a multi-domain protein, containing bromo, PHD, PWWP, and MYND domains. The specific role of the PWWP domain within BS69 is not clearly identified, but BS69 functions in chromatin remodeling, consistent with other PWWP-containing proteins. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.
Probab=41.56 E-value=37 Score=30.94 Aligned_cols=55 Identities=16% Similarity=0.358 Sum_probs=46.1
Q ss_pred CCcCCCeEEEEEcCCCcEEEEEEEeeccccccccCCEEEEEEEe-cCCceeecCCCcccCCccc
Q 001723 809 NPKKGEIVLAQFSADNSWNRAMIVNAPREKVESVNDKFEVFYID-YGNQELVPYNKLRPIDPSL 871 (1020)
Q Consensus 809 ~p~~G~~c~A~fs~D~~WYRA~V~~~~~~~~~~~~~~v~V~fVD-yGn~e~V~~~~Lr~Lp~~f 871 (1020)
+-.+|+++-|+.. .=-|.=|+|++. .++.+.|+|.. -..+..|+.++|.++...+
T Consensus 6 c~~p~dLVwAK~k-Gyp~WPAkV~~~-------~~~~~~V~FFG~t~~~a~v~~~~i~~~~~~~ 61 (83)
T cd05841 6 CRPPHELVWAKLK-GFPYWPAKVMRV-------EDNQVDVRFFGGQHDRAWIPSNNIQPISTEI 61 (83)
T ss_pred cCCCCCEEEEeCC-CCCCCCEEEeec-------CCCeEEEEEcCCCCCeEEEehHHeeehhhhh
Confidence 4678999999974 345888999987 57899999988 8888999999999997654
No 35
>COG2134 Cdh CDP-diacylglycerol pyrophosphatase [Lipid metabolism]
Probab=29.32 E-value=72 Score=33.82 Aligned_cols=51 Identities=24% Similarity=0.421 Sum_probs=37.1
Q ss_pred EEEEEeccCCCCCCCCCCCch-hHHHHHHHHHHhcC----CCeEEEEEceecCCCCcEE
Q 001723 42 TLTLSSIITPRLARRGGLDEP-FAWDSREFLRKLCI----GKEVTFRVDYAVPNIGREF 95 (1020)
Q Consensus 42 ~vrL~gIdaPe~~~~~~~~ep-~a~eAre~Lr~ll~----Gk~V~~~~~~~~d~~gR~~ 95 (1020)
+.|+.||..|-+-...++.-- .||+||.|..+++. ...|.+.+. +++||.-
T Consensus 81 t~rItGiEsP~L~e~atpNyf~~AWqAR~fms~kyg~~ipd~dvsLaIN---s~~gRtQ 136 (252)
T COG2134 81 TARITGIESPLLLEPATPNYFYLAWQARDFMSKKYGNPIPDSDVSLAIN---SKNGRTQ 136 (252)
T ss_pred eecccCCcChhhcCCCCccHHHHHHHHHHHHHHHhCCCCCccceEEEec---CccCccc
Confidence 789999999998644333332 39999999999984 356777765 4567753
No 36
>PF07039 DUF1325: SGF29 tudor-like domain; InterPro: IPR010750 SAGA-associated factor 29 is involved in transcriptional regulation, probably through association with histone acetyltransferase (HAT) complexes like the TFTC-HAT or STAGA complexes. It also may be involved in MYC-mediated oncogenic transformation. It is a component of the ATAC complex, which is a complex with histone acetyltransferase activity on histones H3 and H4 []. This entry represents a domain found in yeast and human SAGA-associated factor 29 proteins that is related to the tudor domain. ; PDB: 3MP6_A 3MP1_A 3MP8_A 3MET_B 3ME9_A 3MEU_B 3MEA_A 3MEV_B 3LX7_A 3MEW_A.
Probab=26.43 E-value=2e+02 Score=28.54 Aligned_cols=54 Identities=19% Similarity=0.296 Sum_probs=41.2
Q ss_pred cCCCeEEEEEc---CCCcEEEEEEEeeccccccccCCEEEEEEEecC---CceeecCCCcccCCc
Q 001723 811 KKGEIVLAQFS---ADNSWNRAMIVNAPREKVESVNDKFEVFYIDYG---NQELVPYNKLRPIDP 869 (1020)
Q Consensus 811 ~~G~~c~A~fs---~D~~WYRA~V~~~~~~~~~~~~~~v~V~fVDyG---n~e~V~~~~Lr~Lp~ 869 (1020)
++|+.|||+.. .++.|-=|.|++... ..++++|.=+|-+ +.-.++.++|-+||.
T Consensus 1 q~G~~VAak~~~~~~~~~WIla~Vv~~~~-----~~~rYeV~D~d~~~~~~~~~~~~~~iIPLP~ 60 (130)
T PF07039_consen 1 QPGDQVAAKVKQGNEEEEWILAEVVKYNS-----DGNRYEVEDPDPEEEKKRYKLSRKQIIPLPK 60 (130)
T ss_dssp -TT-EEEEEECTTTTTCEEEEEEEEEEET-----TTTEEEEEETTTCTTTEEEEEEGGGEEEE-S
T ss_pred CCCCEEEEEcCCCCCCCCEEEEEEEEEeC-----CCCEEEEecCCCCCCCceEEeCHHHEEECCC
Confidence 47999999874 457899999999863 4569999999997 355678888888886
No 37
>KOG3038 consensus Histone acetyltransferase SAGA associated factor SGF29 [General function prediction only]
Probab=23.83 E-value=3.1e+02 Score=30.20 Aligned_cols=57 Identities=23% Similarity=0.316 Sum_probs=39.6
Q ss_pred CCCCcCCCeEEEEE---cCCCcEEEEEEEeeccccccccCCEEEEEEEecCC--ceeecCCCcccCCc
Q 001723 807 AFNPKKGEIVLAQF---SADNSWNRAMIVNAPREKVESVNDKFEVFYIDYGN--QELVPYNKLRPIDP 869 (1020)
Q Consensus 807 ~~~p~~G~~c~A~f---s~D~~WYRA~V~~~~~~~~~~~~~~v~V~fVDyGn--~e~V~~~~Lr~Lp~ 869 (1020)
.+.+.+|+-++|++ ++|+.|-=|.|+.+. .+..+++.-+|==- .+.-...+|.+||.
T Consensus 125 ~~~~~~gd~VAa~v~~~~~dg~WIlaeVv~~~------~~~~ye~ev~D~Epk~d~~g~r~~~yklp~ 186 (264)
T KOG3038|consen 125 DYVLLKGDEVAARVKAVSEDGDWILAEVVKVS------SETRYEFEVVDPEPKKDEVGNRGQLYKLPR 186 (264)
T ss_pred CccccCCceeeeeeeeccCCCCEEEEEEEEEe------cCCceEeEecCCCccccccccccceecccH
Confidence 46788999999988 568889999999985 34447777766433 34444555555553
No 38
>PF02736 Myosin_N: Myosin N-terminal SH3-like domain; InterPro: IPR004009 This domain has an SH3-like fold. It is found at the N terminus of many but not all myosins. The function of this domain is unknown.; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 2EC6_A 2W4H_M 1O1E_P 1O1D_D 1O18_A 1O1C_P 1O1B_D 1O1F_A 2W4A_M 2W4G_M ....
Probab=23.78 E-value=1.9e+02 Score=22.61 Aligned_cols=39 Identities=21% Similarity=0.210 Sum_probs=30.6
Q ss_pred eEEEEEcCCCcEEEEEEEeeccccccccCCEEEEEEEecCCceeecCC
Q 001723 815 IVLAQFSADNSWNRAMIVNAPREKVESVNDKFEVFYIDYGNQELVPYN 862 (1020)
Q Consensus 815 ~c~A~fs~D~~WYRA~V~~~~~~~~~~~~~~v~V~fVDyGn~e~V~~~ 862 (1020)
.|=+.- ....|-.|.|++. .++.+.|...| |...+|+.+
T Consensus 3 ~vWvpD-~~egfv~g~I~~~-------~g~~vtV~~~~-G~~~tv~~d 41 (42)
T PF02736_consen 3 WVWVPD-PKEGFVKGEIIEE-------EGDKVTVKTED-GKEVTVKKD 41 (42)
T ss_dssp EEEEEE-SSSSEEEEEEEEE-------ESSEEEEEETT-TEEEEEEGG
T ss_pred EEEEeC-CcccEEEEEEEEE-------cCCEEEEEECC-CCEEEeCCC
Confidence 344443 3567999999987 68999999999 998888754
No 39
>PF00855 PWWP: PWWP domain; InterPro: IPR000313 Upon characterisation of WHSC1, a gene mapping to the Wolf-Hirschhornsyndrome critical region and at its C terminus similar to the Drosophila melanogaster ASH1/trithorax group proteins, a novel protein domain designated PWWP domain was identified []. The PWWP domain is named after a conserved Pro-Trp-Trp-Pro motif. It is present in proteins of nuclear origin and plays a role in cell growth and differentiation. Due to its position, the composition of amino acids close to the PWWP motif and the pattern of other domains present it has been suggested that the domain is involved in protein-protein interactions [].; PDB: 3LYI_B 2L89_A 2NLU_A 1RI0_A 1KHC_A 3QKJ_C 2DAQ_A 1N27_A 3PFS_B 3QJ6_A ....
Probab=23.38 E-value=1.5e+02 Score=26.45 Aligned_cols=57 Identities=16% Similarity=0.351 Sum_probs=43.9
Q ss_pred cCCCeEEEEEcCCCcEEEEEEEeeccc-cccccCCEEEEEEEecCCceeecCCCcccCC
Q 001723 811 KKGEIVLAQFSADNSWNRAMIVNAPRE-KVESVNDKFEVFYIDYGNQELVPYNKLRPID 868 (1020)
Q Consensus 811 ~~G~~c~A~fs~D~~WYRA~V~~~~~~-~~~~~~~~v~V~fVDyGn~e~V~~~~Lr~Lp 868 (1020)
.+|++|-|+.. .--|.=|+|+..... ......+.+.|+|.+-.....|+.++|.++.
T Consensus 2 ~~GdlVWaK~~-g~pwWPa~V~~~~~~~~~~~~~~~~~V~Ffg~~~~~wv~~~~i~~f~ 59 (86)
T PF00855_consen 2 RPGDLVWAKLK-GYPWWPARVCDPDEKSKKKRKDGHVLVRFFGDNDYAWVKPSNIKPFS 59 (86)
T ss_dssp STTEEEEEEET-TSEEEEEEEEECCHCTSCSSSSTEEEEEETTTTEEEEEEGGGEEECC
T ss_pred CCCCEEEEEeC-CCCCCceEEeecccccccCCCCCEEEEEecCCCCEEEECHHHhhChh
Confidence 57999999984 556999999997410 0122568999999887777888888888886
No 40
>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification]
Probab=23.34 E-value=59 Score=37.71 Aligned_cols=52 Identities=17% Similarity=0.198 Sum_probs=38.4
Q ss_pred CCcCCCeEEEEEcCCCcEEEEEEEeeccccccccCCEEEEEEEecCCceeecCCCcccCC
Q 001723 809 NPKKGEIVLAQFSADNSWNRAMIVNAPREKVESVNDKFEVFYIDYGNQELVPYNKLRPID 868 (1020)
Q Consensus 809 ~p~~G~~c~A~fs~D~~WYRA~V~~~~~~~~~~~~~~v~V~fVDyGn~e~V~~~~Lr~Lp 868 (1020)
.+.+|..|.|+. .|+.|++|+|..++ ...+.|.++=-|....+...|+.+++
T Consensus 180 ~L~~gs~vlak~-~sdiWh~ari~~vd-------~~~q~vkv~~~g~~~s~kegD~~~~~ 231 (486)
T KOG2185|consen 180 QLMVGSKVLAKS-GSDIWHKARIESVD-------DELQVVKVVFRGDKSSAKEGDSLALS 231 (486)
T ss_pred HHhhcCeeeeec-cchhhhhhheeeec-------cceeEEEEEeccchhhhhcccccCcc
Confidence 467899999997 58999999999994 55566666666666666666666554
No 41
>PF11302 DUF3104: Protein of unknown function (DUF3104); InterPro: IPR021453 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=23.10 E-value=2.3e+02 Score=25.43 Aligned_cols=59 Identities=22% Similarity=0.336 Sum_probs=43.9
Q ss_pred CCcCCCeEEEEEcC------CCcEEEEEEEeeccccccc-cCCEEEEEEEecCCceeecCCCcccC
Q 001723 809 NPKKGEIVLAQFSA------DNSWNRAMIVNAPREKVES-VNDKFEVFYIDYGNQELVPYNKLRPI 867 (1020)
Q Consensus 809 ~p~~G~~c~A~fs~------D~~WYRA~V~~~~~~~~~~-~~~~v~V~fVDyGn~e~V~~~~Lr~L 867 (1020)
.++.|++++.+-.. ++.|+=|.|+...-+.... ....++|--||-|....|..+....+
T Consensus 5 ~Vk~Gd~ViV~~~~~~~~~~~~dWWmg~Vi~~~ggaR~P~~~tlFQVadVDtG~I~wVnaD~Vt~I 70 (75)
T PF11302_consen 5 SVKPGDTVIVQDEQEVGQKQDKDWWMGQVIHCEGGARDPKVPTLFQVADVDTGVIRWVNADEVTHI 70 (75)
T ss_pred ccCCCCEEEEecCccccccCCCCcEEEEEEEEeccccCCCCCceEEEEEccCCeEEEEEchheeee
Confidence 47899999998654 5689999999874211111 24568999999999999987766554
No 42
>cd06080 MUM1_like Mutated melanoma-associated antigen 1 (MUM-1) is a melanoma-associated antigen (MAA). MUM-1 belongs to the mutated or aberrantly expressed type of MAAs, along with antigens such as CDK4, beta-catenin, gp100-in4, p15, and N-acetylglucosaminyltransferase V. It is highly expressed in several types of human cancers. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.
Probab=22.02 E-value=1.7e+02 Score=26.49 Aligned_cols=55 Identities=20% Similarity=0.261 Sum_probs=41.2
Q ss_pred cCCCeEEEEEcCCCcEEEEEEEeeccccccccCCEEEEEEEecC-CceeecCCCcccCCccc
Q 001723 811 KKGEIVLAQFSADNSWNRAMIVNAPREKVESVNDKFEVFYIDYG-NQELVPYNKLRPIDPSL 871 (1020)
Q Consensus 811 ~~G~~c~A~fs~D~~WYRA~V~~~~~~~~~~~~~~v~V~fVDyG-n~e~V~~~~Lr~Lp~~f 871 (1020)
.+|+++-|+.. .=-|.=|+|.++.. ...++.|+|+.-+ ....+..++|.+-.+.|
T Consensus 2 ~~gdlVWaK~~-g~P~WPa~I~~~~~-----~~~k~~V~FfG~~~~~a~~~~~~l~p~~~~~ 57 (80)
T cd06080 2 EKNDLVWAKIQ-GYPWWPAVIKSISR-----KKQKARVNFIGDNMQSEKKGIRVVKRWLKHF 57 (80)
T ss_pred CCCCEEEEeCC-CCCCCCEEEeeecC-----CCCEEEEEEeCCCCceeccchhhcccccccH
Confidence 57999999974 44588899999853 5789999998877 66667777776654433
No 43
>PRK07899 rpsA 30S ribosomal protein S1; Reviewed
Probab=21.05 E-value=1.6e+03 Score=27.48 Aligned_cols=134 Identities=8% Similarity=0.091 Sum_probs=79.9
Q ss_pred CCCccEEEEEEEEEecCC-eEEEEEcCchhHHHHHHHHHHHHhcCCCCCCCCCCcCCCeEEEEEcCCCcEEEEEEEeecc
Q 001723 758 GKQKEVLKVVVTEILGGG-KFYVQQVGDQKVASVQQQLASLNLQEAPVIGAFNPKKGEIVLAQFSADNSWNRAMIVNAPR 836 (1020)
Q Consensus 758 ~~~~~~~~V~Vt~V~sp~-~FyvQ~~~~~~L~~L~~~L~~~~~~~~~~~~~~~p~~G~~c~A~fs~D~~WYRA~V~~~~~ 836 (1020)
.+.|+.++++|..+.+.. .+.+-... ..+...-+.+.+.+ +.+....++|+++.
T Consensus 80 ~~vGd~Ie~~V~~~~~~~g~liLS~k~-~~~~~~w~~ie~~~-----------------------e~g~~V~G~V~~v~- 134 (486)
T PRK07899 80 VEVGDEVEALVLQKEDKEGRLILSKKR-AQYERAWGTIEKIK-----------------------EKDGVVTGTVIEVV- 134 (486)
T ss_pred CCCCCEEEEEEEEEECCCCeEEEEehh-hcccchHHHHHHHh-----------------------cCCCEEEEEEEEEE-
Confidence 346899999999987543 44443322 11122333333332 13455667788874
Q ss_pred ccccccCCEEEEEEEecCCceeecCCCcccCC-ccccCCCCceEEEEecceecCCCC----------CCChHHHHHHHhh
Q 001723 837 EKVESVNDKFEVFYIDYGNQELVPYNKLRPID-PSLSSTPPLAQLCSLAYIKIPALE----------DEYGPEAAEFLNE 905 (1020)
Q Consensus 837 ~~~~~~~~~v~V~fVDyGn~e~V~~~~Lr~Lp-~~f~~lP~qAi~c~LagV~p~~~~----------~~Ws~eA~~~f~~ 905 (1020)
+.- +|||+|....+|.+.+-.-+ .++..+.-+-++|.+-.+.+-... ..+...-..++.+
T Consensus 135 ------k~G---~~VdlGi~gflP~Sel~~~~~~~~~~~vGq~V~vkVleid~~~~~ivLSrr~~l~~~~~~~~~~~~~~ 205 (486)
T PRK07899 135 ------KGG---LILDIGLRGFLPASLVEMRRVRDLQPYIGQEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQ 205 (486)
T ss_pred ------CCe---EEEEECCEEEEEhhHhcccccCChhhcCCCEEEEEEEEEECCCCEEEEEhHHHHHhhhHHHHHHHHHh
Confidence 222 47778988888877543211 234456889999999887764221 1122222344556
Q ss_pred ccccCCCEEEEEEEEEeCCCCc
Q 001723 906 HTYNSSNEFRALVEERDSSGGK 927 (1020)
Q Consensus 906 lllv~~k~l~a~V~~~~~~g~~ 927 (1020)
+-.|..+.++|....+.|-+
T Consensus 206 --lk~G~iv~G~V~~i~~~G~F 225 (486)
T PRK07899 206 --LQKGQVRKGVVSSIVNFGAF 225 (486)
T ss_pred --ccCCCEEEEEEEEEECCeEE
Confidence 56789999999998876544
No 44
>TIGR00008 infA translation initiation factor IF-1. This family consists of translation initiation factor IF-1 as found in bacteria and chloroplasts. This protein, about 70 residues in length, consists largely of an S1 RNA binding domain (pfam00575).
Probab=20.90 E-value=1.8e+02 Score=25.65 Aligned_cols=31 Identities=19% Similarity=0.235 Sum_probs=25.6
Q ss_pred cCEEEEEEecCCEEEEEecCCceeEEEEEecc
Q 001723 618 IPAVVEYVLSGHRFKVLIPKETCSIAFSFSGV 649 (1020)
Q Consensus 618 l~~vVe~V~~G~~~~v~lp~~~~~i~~~LaGI 649 (1020)
+.|+|..+..+..|+|.+... ..+.|.++|=
T Consensus 7 ~~G~V~e~L~~~~f~V~l~ng-~~vla~i~GK 37 (68)
T TIGR00008 7 MEGKVTESLPNAMFRVELENG-HEVLAHISGK 37 (68)
T ss_pred EEEEEEEECCCCEEEEEECCC-CEEEEEecCc
Confidence 579999999999999999764 5567888773
Done!