Query 001724
Match_columns 1020
No_of_seqs 190 out of 739
Neff 4.1
Searched_HMMs 29240
Date Tue Mar 26 15:48:20 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001724.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1023-1026//hhsearch_pdb/001724hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qip_A Protein of unknown func 1.0 1 1 189.7 6.9 149 44-196 4-163 (165)
2 2kzv_A Uncharacterized protein 1.0 1 1 100.0 7.7 71 257-328 11-84 (92)
3 2kpm_A Uncharacterized protein 1.0 1 1 96.4 6.5 68 257-325 24-97 (105)
4 3s93_A Tudor domain-containing 1.0 1 1 48.9 6.3 62 735-796 4-65 (102)
5 3s93_A Tudor domain-containing 1.0 1 1 45.6 6.5 73 256-328 10-83 (102)
6 3rco_A Tudor domain-containing 1.0 1 1 43.7 7.9 72 257-328 13-85 (89)
7 3rco_A Tudor domain-containing 1.0 1 1 37.4 5.3 61 739-799 10-71 (89)
8 2lo0_A Uncharacterized protein 1.0 1 1 20.1 1.7 22 587-608 31-52 (75)
9 3hts_B Heat shock transcriptio 1.0 1 1 17.2 0.0 15 292-306 56-70 (102)
10 1hks_A Heat-shock transcriptio 1.0 1 1 16.5 -4.0 15 292-306 48-62 (106)
No 1
>2qip_A Protein of unknown function VPA0982; APC85975, vibrio parahaemolyticus RIMD 2210633, STR genomics, PSI-2, protein structure initiative; 1.48A {Vibrio parahaemolyticus}
Probab=1.00 E-value=1 Score=189.72 Aligned_cols=149 Identities=17% Similarity=0.245 Sum_probs=120.0
Q ss_pred CCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEE-EEEECCCCC--CHHHHHHHHHCCCCEEECCC
Q ss_conf 323589808999954799889998755589999999998099896099-995036546--34349985402884022069
Q 001724 44 EEESKNVRVSVWWDFENCNLPAGVNAFKVAHTITAAIRANGIKGPVTI-TAFGDVVQM--SRANQEVLSSTGINIAHVPH 120 (1020)
Q Consensus 44 ~~es~~~rVAVFWDiENcpiPsg~da~~Va~nI~~aLeelG~~GpVtI-RAYGDws~~--~~~~qe~L~ssGIsLihvP~ 120 (1020)
|.++...++|||||++|++.+.+ ..+....++..+++.+..+|.+.. ++||+|... ...|++.|...||+++..|.
T Consensus 4 m~~~~~~rvavfiD~~Nl~~~~~-~~~~~~~d~~~l~~~~~~~g~l~~~~~Y~~~~~~~~~~~~~~~L~~~g~~v~~~p~ 82 (165)
T 2qip_A 4 MQSDHKEKIAILVDVQNVYYTCR-EAYRSNFDYNQFWYVATQEKEVVSAKAYAIASNDPKQRQFHHILRGVGFEVMLKPY 82 (165)
T ss_dssp CCCCCCEEEEEEEEHHHHHHHHH-HHHSSCBCHHHHHHHHTTTEEEEEEEEEECCCCCHHHHHHHHHHHHHTCEEEECCC
T ss_pred CCCCCCCCEEEEEEHHHHHHHHH-HHCCCCCCHHHHHHHHHCCCEEEEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEE
T ss_conf 33589983999997799999999-97089989999999986488799999998257756588999999977908999732
Q ss_pred ------CCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHC-CCEEEEECCC-CHHHHHHHHCCEEEEC
Q ss_conf ------9965024679999999998199985999992896649999999729-9899983179-5009998202618761
Q 001724 121 ------GGKNSADRSLLVDLMYWVSQNPPPAHLFLISGDRDFASVLHRLRMN-NYNILLASRE-SASNVLCSAASVMWNW 192 (1020)
Q Consensus 121 ------ggKNAADi~LiIDaMdwl~~NP~pdtFVLISGDsDFtpLL~RLRer-GynVILa~p~-kTseaL~sAcd~Fw~w 192 (1020)
.+||++|+.|++|||+++ +.+++|||||||+||++++.+||++ |+.|++++.. .++..|+++||.|+++
T Consensus 83 ~~~~~~~~k~~~Dv~laiD~~~~a---~~~d~~vLvSgD~DF~plv~~lr~~~G~~V~v~g~~~~~s~~L~~~ad~fi~l 159 (165)
T 2qip_A 83 IQRRDGSAKGDWDVGITLDAIEIA---PDVDRVILVSGDGDFSLLVERIQQRYNKKVTVYGVPRLTSQTLIDCADNFVAI 159 (165)
T ss_dssp CCCSSCCCSCCCHHHHHHHHHHHG---GGCSEEEEECCCGGGHHHHHHHHHHHCCEEEEEECGGGSCHHHHHHSSEEEEC
T ss_pred EECCCCCCCCCCCHHHHHHHHHHH---CCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHCCEEEEC
T ss_conf 332677667885299999999763---62999999977760999999999876968999937974759999868988965
Q ss_pred CCHH
Q ss_conf 1001
Q 001724 193 DSLL 196 (1020)
Q Consensus 193 esLl 196 (1020)
++++
T Consensus 160 ~~~~ 163 (165)
T 2qip_A 160 DDDF 163 (165)
T ss_dssp SGGG
T ss_pred CHHH
T ss_conf 4453
No 2
>2kzv_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; NMR {Chromobacterium violaceum}
Probab=1.00 E-value=1 Score=100.03 Aligned_cols=71 Identities=11% Similarity=0.113 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCCCCC---EEEEECCCC
Q ss_conf 999999999972998402699999996299999989628355999998477655741079982---799904899
Q 001724 257 SVVRQIRYILKSYPEGIFITELRAELSKSPVTIDKDLYGYKKFSRFLLSMPNILRLQPEPDGQ---FLVYGSTPK 328 (1020)
Q Consensus 257 ~lik~Ir~iL~s~~g~VsLs~Lg~~Lkk~~pdFD~R~YGykKFSdLL~slp~ivei~~~g~g~---~~Vr~~~~~ 328 (1020)
.++..+...+..++||++||.||++|+++.|+||+|+|||++|++||++++ +|++...+.++ ++||+++.+
T Consensus 11 ~ll~~Ai~~~~dedGWa~Lg~vG~~i~k~~PdFD~RnYGy~kLs~Li~~~~-~fe~~~~~~~~~~~i~vR~~~~~ 84 (92)
T 2kzv_A 11 DMFTSAIEAVARDSGWAELSAVGSYLAKNDPSFDPRNWGHGRLSQMVKKLD-FLTVQESRNGSKLHSEIRLRHDG 84 (92)
T ss_dssp HHHHHHHHHHTTTTSSCBHHHHHHHHHHHCTTCCTTTTCSSHHHHHHHTCT-TEEEEEEEETTEEEEEEEECSSC
T ss_pred HHHHHHHHHHCCCCCCEEHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCC-CEEEEECCCCCCEEEEEEECCCC
T ss_conf 999999998628777285999999999858499960148022999998257-67998737898527999767754
No 3
>2kpm_A Uncharacterized protein; methods development, structural genomics, PSI-2, protein structure initiative; NMR {Nitrosomonas europaea}
Probab=1.00 E-value=1 Score=96.36 Aligned_cols=68 Identities=18% Similarity=0.203 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHH-CCCCEEEECC--CC---CCEEEEEC
Q ss_conf 9999999999729984026999999962999999896283559999984-7765574107--99---82799904
Q 001724 257 SVVRQIRYILKSYPEGIFITELRAELSKSPVTIDKDLYGYKKFSRFLLS-MPNILRLQPE--PD---GQFLVYGS 325 (1020)
Q Consensus 257 ~lik~Ir~iL~s~~g~VsLs~Lg~~Lkk~~pdFD~R~YGykKFSdLL~s-lp~ivei~~~--g~---g~~~Vr~~ 325 (1020)
.++..+...+..++||+.||.||++|+++.|+||+|+|||++|++||++ ++ +|++... +. ..++||.+
T Consensus 24 ~lL~~Ai~~~~dddGWa~Lg~vG~~L~k~~PdFDpRnYGy~kLs~Li~a~~~-~FEi~~r~~~~~~~~~vyvr~~ 97 (105)
T 2kpm_A 24 KFVLAALEQSSDDAGWANLGNFGNYLNKLQPDFDSRLYGYKKLSDLVKARTD-LFVTEERQVPGSTQKALYLRAK 97 (105)
T ss_dssp HHHHHHHHHTBCTTSCEEHHHHHHHHHHHCTTCCGGGTTCSSHHHHHHHCTT-TEEEEEEECTTCSSEEEEEEEC
T ss_pred HHHHHHHHHHCCCCCCEEHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCC-CEEEEEECCCCCCCEEEEEEHH
T ss_conf 9999999984487673859999999998486999501481449999996087-5798861279987548998511
No 4
>3s93_A Tudor domain-containing protein 5; structural genomics consortium, SGC, transcription; 2.28A {Homo sapiens}
Probab=1.00 E-value=1 Score=48.89 Aligned_cols=62 Identities=23% Similarity=0.369 Sum_probs=54.2
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCE
Q ss_conf 04688999999999999738798543035799999823433300002133456785257642
Q 001724 735 SRNDILADCQKLVDEILKEYPEGYNMRGFRQLFIERYGYHLDIQKLGYQKLGTLLQIMPGVM 796 (1020)
Q Consensus 735 sR~~il~DcqKLvkeil~e~p~Gyni~~Frk~F~~~ygy~ld~~klgy~~l~sllqimpgv~ 796 (1020)
.++++|++-.|.|.-+|--.++|-.+..+.+.|.+-.|+++...+|||..|..||+-||+|-
T Consensus 4 ~~~~~l~~vkk~irslLiS~K~gvtl~~L~~dYr~~~G~~iP~r~lGy~sl~~fL~sipdvv 65 (102)
T 3s93_A 4 EQERIQECLRKEIRSLLISTKDGLSPQELEKEYLLMVGNHLPLRILGYRSTMELVLDMPDVV 65 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSSCBCHHHHHHHHHHHHSSCCCTGGGTCSSHHHHHHTCTTTE
T ss_pred CHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHCCCCCCCHHCCCCCHHHHHHCCCCEE
T ss_conf 18999999999988851127999589999999999719959815408678999997177869
No 5
>3s93_A Tudor domain-containing protein 5; structural genomics consortium, SGC, transcription; 2.28A {Homo sapiens}
Probab=1.00 E-value=1 Score=45.59 Aligned_cols=73 Identities=22% Similarity=0.405 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHCC-CCCCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCEEEEECCCC
Q ss_conf 999999999997299840269999999629-9999989628355999998477655741079982799904899
Q 001724 256 KSVVRQIRYILKSYPEGIFITELRAELSKS-PVTIDKDLYGYKKFSRFLLSMPNILRLQPEPDGQFLVYGSTPK 328 (1020)
Q Consensus 256 k~lik~Ir~iL~s~~g~VsLs~Lg~~Lkk~-~pdFD~R~YGykKFSdLL~slp~ivei~~~g~g~~~Vr~~~~~ 328 (1020)
..+.+.||.+|-+..+++++..|....+.. +-.+..+.|||+.+-+||+++|+++++...+.|..+|..+...
T Consensus 10 ~~vkk~irslLiS~K~gvtl~~L~~dYr~~~G~~iP~r~lGy~sl~~fL~sipdvv~~~~~~~G~~~v~av~~~ 83 (102)
T 3s93_A 10 ECLRKEIRSLLISTKDGLSPQELEKEYLLMVGNHLPLRILGYRSTMELVLDMPDVVRVCPGAGGTVILKAIPDE 83 (102)
T ss_dssp HHHHHHHHHHHHSSSSCBCHHHHHHHHHHHHSSCCCTGGGTCSSHHHHHHTCTTTEEEECCGGGCCEEEEC---
T ss_pred HHHHHHHHHHHEECCCCCCHHHHHHHHHHHCCCCCCCHHCCCCCHHHHHHCCCCEEEEEECCCCCEEEEEEECH
T ss_conf 99999988851127999589999999999719959815408678999997177869998659998899997088
No 6
>3rco_A Tudor domain-containing protein 7; structural genomics, structural genomics consortium, SGC, HL DNA binding protein; 1.80A {Homo sapiens} PDB: 2lh9_A
Probab=1.00 E-value=1 Score=43.75 Aligned_cols=72 Identities=21% Similarity=0.383 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHCC-CCCCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCEEEEECCCC
Q ss_conf 99999999997299840269999999629-9999989628355999998477655741079982799904899
Q 001724 257 SVVRQIRYILKSYPEGIFITELRAELSKS-PVTIDKDLYGYKKFSRFLLSMPNILRLQPEPDGQFLVYGSTPK 328 (1020)
Q Consensus 257 ~lik~Ir~iL~s~~g~VsLs~Lg~~Lkk~-~pdFD~R~YGykKFSdLL~slp~ivei~~~g~g~~~Vr~~~~~ 328 (1020)
.+.+.||.++-+..+++.+..|....+.. +-.+--|.+||+.+-+||++||+++.+.....|..+|+.+...
T Consensus 13 ~V~k~iRslL~S~k~gvtl~~L~~DYr~l~G~~iP~r~lGy~sl~~fL~siPdvv~~~~~~~Gev~v~Av~~~ 85 (89)
T 3rco_A 13 LVSKMLRAVLQSHKNGVALPRLQGEYRSLTGDWIPFKQLGFPTLEAYLRSVPAVVRIETSRSGEITCYAMACT 85 (89)
T ss_dssp HHHHHHHHHHHTCTTCEEHHHHHHHHHHHHSSCCCTTTTTCSSHHHHHHTCTTTEEEEECTTSCEEEEECC--
T ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCHHHHCCCCHHHHHHCCCCEEEEEECCCCCEEEEEEECC
T ss_conf 9999999873017999788999999999709938815507656999996253759998669997999998765
No 7
>3rco_A Tudor domain-containing protein 7; structural genomics, structural genomics consortium, SGC, HL DNA binding protein; 1.80A {Homo sapiens} PDB: 2lh9_A
Probab=1.00 E-value=1 Score=37.41 Aligned_cols=61 Identities=20% Similarity=0.350 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCE-EEC
Q ss_conf 8999999999999738798543035799999823433300002133456785257642-103
Q 001724 739 ILADCQKLVDEILKEYPEGYNMRGFRQLFIERYGYHLDIQKLGYQKLGTLLQIMPGVM-IES 799 (1020)
Q Consensus 739 il~DcqKLvkeil~e~p~Gyni~~Frk~F~~~ygy~ld~~klgy~~l~sllqimpgv~-ies 799 (1020)
-..+-.|.|.-+|--.+.|-.+..+.+.|-.--|+.+-..+|||..|..+|+-||+|- ++.
T Consensus 10 ~~e~V~k~iRslL~S~k~gvtl~~L~~DYr~l~G~~iP~r~lGy~sl~~fL~siPdvv~~~~ 71 (89)
T 3rco_A 10 EGDLVSKMLRAVLQSHKNGVALPRLQGEYRSLTGDWIPFKQLGFPTLEAYLRSVPAVVRIET 71 (89)
T ss_dssp HHHHHHHHHHHHHHTCTTCEEHHHHHHHHHHHHSSCCCTTTTTCSSHHHHHHTCTTTEEEEE
T ss_pred CHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCHHHHCCCCHHHHHHCCCCEEEEEE
T ss_conf 48999999998730179997889999999997099388155076569999962537599986
No 8
>2lo0_A Uncharacterized protein; dimerization, homodimerization, protein binding; NMR {Aspergillus fumigatus}
Probab=1.00 E-value=1 Score=20.10 Aligned_cols=22 Identities=23% Similarity=0.752 Sum_probs=18.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHCC
Q ss_conf 4333112441358988875308
Q 001724 587 AQKHAVFLKDSFWSDMESFMKS 608 (1020)
Q Consensus 587 ~~~~e~F~~~~fW~~~esfi~~ 608 (1020)
+-+.++...+-||+||+.||..
T Consensus 31 ~sg~~vl~TeeFW~DL~gFL~q 52 (75)
T 2lo0_A 31 PSGESVVATEAFWDDLQGFLEQ 52 (75)
T ss_dssp CCSSTTTTSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHH
T ss_conf 1389898599999999999998
No 9
>3hts_B Heat shock transcription factor; transcription regulation, DNA-binding protein, complex (WING helix_TURN_ helix-DNA); 1.75A {Kluyveromyces lactis} SCOP: a.4.5.22 PDB: 2hts_A 1fyk_A* 1fym_A 1fyl_A 3hsf_A 1fbu_A 1fbs_A 1fbq_A
Probab=1.00 E-value=1 Score=17.22 Aligned_cols=15 Identities=13% Similarity=0.461 Sum_probs=6.9
Q ss_pred CCCCHHHHHHHHHHC
Q ss_conf 962835599999847
Q 001724 292 DLYGYKKFSRFLLSM 306 (1020)
Q Consensus 292 R~YGykKFSdLL~sl 306 (1020)
+.|.+.+|+.|++-+
T Consensus 56 ~yFkh~nfsSFvRQL 70 (102)
T 3hts_B 56 KYFKHSNFASFVRQL 70 (102)
T ss_dssp HHCSSCCHHHHHHHH
T ss_pred HHCCCCCHHHHHHHH
T ss_conf 752898377888775
No 10
>1hks_A Heat-shock transcription factor; transcription regulation; NMR {Drosophila melanogaster} SCOP: a.4.5.22 PDB: 1hkt_A
Probab=1.00 E-value=1 Score=16.53 Aligned_cols=15 Identities=13% Similarity=0.273 Sum_probs=7.0
Q ss_pred CCCCHHHHHHHHHHC
Q ss_conf 962835599999847
Q 001724 292 DLYGYKKFSRFLLSM 306 (1020)
Q Consensus 292 R~YGykKFSdLL~sl 306 (1020)
+.|.+.+|+.|++-+
T Consensus 48 ~yFkh~n~~SFvRQL 62 (106)
T 1hks_A 48 LNYKHNNMASFIRQL 62 (106)
T ss_dssp TTTSCCCHHHHHHHH
T ss_pred HHCCCCCHHHHHHHH
T ss_conf 863887689999763
Done!