Query 001724
Match_columns 1020
No_of_seqs 190 out of 739
Neff 4.1
Searched_HMMs 13730
Date Tue Mar 26 15:54:04 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001724.a3m -d /local_scratch/syshi/scop70.hhm -v 0 -o /local_scratch/syshi/H1_1023-1026//hhsearch_scop/001724hhsearch_scop
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1tfra2 c.120.1.2 (A:12-180) T 6.9 47 0.0034 8.8 4.1 48 108-161 105-152 (169)
2 d1rpna_ c.2.1.2 (A:) GDP-manno 6.9 47 0.0034 8.7 4.7 29 148-176 3-33 (321)
3 d1db3a_ c.2.1.2 (A:) GDP-manno 6.8 48 0.0035 8.7 4.6 30 147-176 3-34 (357)
4 d1kjna_ c.115.1.1 (A:) Hypothe 6.6 50 0.0036 8.5 2.5 49 146-194 3-58 (152)
5 d1cmwa2 c.120.1.2 (A:10-173) 5 6.2 54 0.0039 8.3 3.0 51 105-161 91-141 (164)
6 d1kl7a_ c.79.1.1 (A:) Threonin 5.8 58 0.0042 8.1 1.8 66 114-180 113-190 (511)
7 d1t2aa_ c.2.1.2 (A:) GDP-manno 5.7 60 0.0044 8.0 4.6 29 147-175 3-33 (347)
8 d1jeoa_ c.80.1.3 (A:) Probable 5.3 65 0.0047 7.7 8.2 102 74-192 25-129 (177)
9 d1vb3a1 c.79.1.1 (A:1-428) Thr 5.2 68 0.0049 7.6 2.1 63 114-180 97-164 (428)
10 d2c5aa1 c.2.1.2 (A:13-375) GDP 5.1 68 0.005 7.6 4.3 26 148-173 18-45 (363)
No 1
>d1tfra2 c.120.1.2 (A:12-180) T4 RNase H {Bacteriophage T4 [TaxId: 10665]}
Probab=6.91 E-value=47 Score=8.75 Aligned_cols=48 Identities=17% Similarity=0.221 Sum_probs=30.2
Q ss_pred HHHCCCCEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHH
Q ss_conf 540288402206999650246799999999981999859999928966499999
Q 001724 108 LSSTGINIAHVPHGGKNSADRSLLVDLMYWVSQNPPPAHLFLISGDRDFASVLH 161 (1020)
Q Consensus 108 L~ssGIsLihvP~ggKNAADi~LiIDaMdwl~~NP~pdtFVLISGDsDFtpLL~ 161 (1020)
+...|+..+..+ +-. ||-.|..=+..+... -..++|||+|.||.-|+.
T Consensus 105 ~~~l~~~~~~~~--~~E-ADDvIa~la~~~~~~---~~~vvIvS~DkD~~QLv~ 152 (169)
T d1tfra2 105 KAYMPYIVMDID--KYE-ADDHIAVLVKKFSLE---GHKILIISSDGDFTQLHK 152 (169)
T ss_dssp HHHSSSEEECCT--TCC-HHHHHHHHHHHHHHT---TCCEEEECCCGGGGGGTT
T ss_pred HHHHHHHCCCCC--CCC-CCCHHHHHHHHHHHC---CCCEEEEECCCCHHHHCC
T ss_conf 997543200248--844-446899999999877---994999928978898271
No 2
>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]}
Probab=6.86 E-value=47 Score=8.72 Aligned_cols=29 Identities=17% Similarity=0.110 Sum_probs=23.2
Q ss_pred EEEECCCCH--HHHHHHHHHCCCEEEEECCC
Q ss_conf 999289664--99999997299899983179
Q 001724 148 FLISGDRDF--ASVLHRLRMNNYNILLASRE 176 (1020)
Q Consensus 148 VLISGDsDF--tpLL~RLRerGynVILa~p~ 176 (1020)
+||+|-..| ..|+.+|.++||.|+++...
T Consensus 3 vLItG~tGfiG~~l~~~Ll~~g~~V~~~~r~ 33 (321)
T d1rpna_ 3 ALVTGITGQDGAYLAKLLLEKGYRVHGLVAR 33 (321)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred EEEECCCCHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 9997888789999999999783989999899
No 3
>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]}
Probab=6.75 E-value=48 Score=8.66 Aligned_cols=30 Identities=20% Similarity=0.185 Sum_probs=25.7
Q ss_pred EEEEECCCCHH--HHHHHHHHCCCEEEEECCC
Q ss_conf 99992896649--9999997299899983179
Q 001724 147 LFLISGDRDFA--SVLHRLRMNNYNILLASRE 176 (1020)
Q Consensus 147 FVLISGDsDFt--pLL~RLRerGynVILa~p~ 176 (1020)
++||+|-..|. .|+.+|.++|+.|+++...
T Consensus 3 ~vLITGatGfiGs~lv~~Ll~~g~~V~~~~r~ 34 (357)
T d1db3a_ 3 VALITGVTGQDGSYLAEFLLEKGYEVHGIKRR 34 (357)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEECC-
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 89996888689999999999786989999789
No 4
>d1kjna_ c.115.1.1 (A:) Hypothetical protein MTH777 (MT0777) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=6.55 E-value=50 Score=8.54 Aligned_cols=49 Identities=12% Similarity=0.135 Sum_probs=31.6
Q ss_pred EEEEEECCC-------CHHHHHHHHHHCCCEEEEECCCCHHHHHHHHCCEEEECCC
Q ss_conf 999992896-------6499999997299899983179500999820261876110
Q 001724 146 HLFLISGDR-------DFASVLHRLRMNNYNILLASRESASNVLCSAASVMWNWDS 194 (1020)
Q Consensus 146 tFVLISGDs-------DFtpLL~RLRerGynVILa~p~kTseaL~sAcd~Fw~wes 194 (1020)
-.+|+-|-- -|.+|+++|+.+|+.|++++...+-..+..|-.+-+|...
T Consensus 3 k~lilLGCPe~Pvq~~~~lyl~~~Lk~kG~~v~Va~npAA~kLievaDPek~Yl~~ 58 (152)
T d1kjna_ 3 KALMVLGCPESPVQIPLAIYTSHKLKKKGFRVTVTANPAALRLVQVADPEGIYTDE 58 (152)
T ss_dssp EEEEECCCSCSTTHHHHHHHHHHHHHHTTCEEEEEECHHHHHHHHHHSTTCCSCSE
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHCCCCCHHHHC
T ss_conf 28999069998613479999999987569716995598997576522865202314
No 5
>d1cmwa2 c.120.1.2 (A:10-173) 5' to 3' exonuclease domain of DNA polymerase Taq {Thermus aquaticus [TaxId: 271]}
Probab=6.21 E-value=54 Score=8.33 Aligned_cols=51 Identities=20% Similarity=0.231 Sum_probs=30.6
Q ss_pred HHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHH
Q ss_conf 998540288402206999650246799999999981999859999928966499999
Q 001724 105 QEVLSSTGINIAHVPHGGKNSADRSLLVDLMYWVSQNPPPAHLFLISGDRDFASVLH 161 (1020)
Q Consensus 105 qe~L~ssGIsLihvP~ggKNAADi~LiIDaMdwl~~NP~pdtFVLISGDsDFtpLL~ 161 (1020)
+..+...|+..+..+. - -||-.|..=+..+... ...++|||+|.||.-|+.
T Consensus 91 ~~~~~~~g~~~~~~~~--~-EADDvIa~la~~~~~~---~~~v~IvS~DkD~~QLv~ 141 (164)
T d1cmwa2 91 KELVDLLGLARLEVPG--Y-EADDVLASLAKKAEKE---GYEVRILTADKDLYQLLS 141 (164)
T ss_dssp HHHHHHTTCEEECCTT--S-CHHHHHHHHHHHHHHT---TEEEEEECSSGGGGGSCC
T ss_pred HHHHHHCCCEEEEECC--C-CHHHHHHHHHHHHCCC---CCEEEEECCCCCHHHHEE
T ss_conf 9997514732787417--4-2477888999874332---325899627977688422
No 6
>d1kl7a_ c.79.1.1 (A:) Threonine synthase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=5.83 E-value=58 Score=8.09 Aligned_cols=66 Identities=17% Similarity=0.121 Sum_probs=33.9
Q ss_pred CEEECCCC-CCCCHHHHHHHHHHHHHHHC----------CCCCEEEEEECCCCHHHHHHHHHHCCCEEEEECCC-CHHH
Q ss_conf 40220699-96502467999999999819----------99859999928966499999997299899983179-5009
Q 001724 114 NIAHVPHG-GKNSADRSLLVDLMYWVSQN----------PPPAHLFLISGDRDFASVLHRLRMNNYNILLASRE-SASN 180 (1020)
Q Consensus 114 sLihvP~g-gKNAADi~LiIDaMdwl~~N----------P~pdtFVLISGDsDFtpLL~RLRerGynVILa~p~-kTse 180 (1020)
+|-|-|+. =|+-+ ..++.-+|+..... ....-++=-|||-.-+.+-.--...|.+|++..|. ..|+
T Consensus 113 ELfhGPT~aFKD~a-~~~l~~~~~~~l~~~~~~~~~~~~~~~~il~aTSGDTG~Aa~~af~~~~~i~v~vlyP~~~vS~ 190 (511)
T d1kl7a_ 113 ELFHGPTYAFKDVA-LQFVGNLFEYFLQRTNANLPEGEKKQITVVGATSGDTGSAAIYGLRGKKDVSVFILYPTGRISP 190 (511)
T ss_dssp ECCCSTTSBTHHHH-HHHHHHHHHHHHHHHHTTSCSSSCCCEEEEEECSSSHHHHHHHHHTTCTTEEEEEEEETTSSCH
T ss_pred EECCCCCCCCCCCC-HHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHCCCCCCEEEEECCCCCCCH
T ss_conf 62238864426861-5568999999998513322345674189998247774188999861788832689616888866
No 7
>d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.65 E-value=60 Score=7.96 Aligned_cols=29 Identities=21% Similarity=0.164 Sum_probs=24.1
Q ss_pred EEEEECCCCHH--HHHHHHHHCCCEEEEECC
Q ss_conf 99992896649--999999729989998317
Q 001724 147 LFLISGDRDFA--SVLHRLRMNNYNILLASR 175 (1020)
Q Consensus 147 FVLISGDsDFt--pLL~RLRerGynVILa~p 175 (1020)
++||+|-..|. .|+..|.++||.|+++..
T Consensus 3 I~LVTG~tGfIG~~l~~~Ll~~g~~V~~i~r 33 (347)
T d1t2aa_ 3 VALITGITGQDGSYLAEFLLEKGYEVHGIVR 33 (347)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCEEEEEEC
T ss_conf 8999047768999999999978398999988
No 8
>d1jeoa_ c.80.1.3 (A:) Probable 3-hexulose-6-phosphate isomerase MJ1247 {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=5.33 E-value=65 Score=7.73 Aligned_cols=102 Identities=18% Similarity=0.132 Sum_probs=57.8
Q ss_pred HHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 99999999809989609999503654634349985402884022069996502467999999999819998599999289
Q 001724 74 HTITAAIRANGIKGPVTITAFGDVVQMSRANQEVLSSTGINIAHVPHGGKNSADRSLLVDLMYWVSQNPPPAHLFLISGD 153 (1020)
Q Consensus 74 ~nI~~aLeelG~~GpVtIRAYGDws~~~~~~qe~L~ssGIsLihvP~ggKNAADi~LiIDaMdwl~~NP~pdtFVLISGD 153 (1020)
..|..+.+.+-.-..|-+.+.|.-..........|...|+...+..... +.. -.+=|.+++||.-
T Consensus 25 ~~i~~~~~~i~~a~~I~~~G~G~S~~~a~~~~~~l~~lg~~~~~~~~~~--~~~-------------~~~~Dl~I~iS~s 89 (177)
T d1jeoa_ 25 NKLDSLIDRIIKAKKIFIFGVGRSGYIGRCFAMRLMHLGFKSYFVGETT--TPS-------------YEKDDLLILISGS 89 (177)
T ss_dssp HHHHHHHHHHHHCSSEEEECCHHHHHHHHHHHHHHHHTTCCEEETTSTT--CCC-------------CCTTCEEEEEESS
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHCCCCCCCCCCCC--CCC-------------CCCCCEEEEECCC
T ss_conf 9999999999879939999756899999999999996597420133323--455-------------6777768871333
Q ss_pred C---CHHHHHHHHHHCCCEEEEECCCCHHHHHHHHCCEEEEC
Q ss_conf 6---64999999972998999831795009998202618761
Q 001724 154 R---DFASVLHRLRMNNYNILLASRESASNVLCSAASVMWNW 192 (1020)
Q Consensus 154 s---DFtpLL~RLRerGynVILa~p~kTseaL~sAcd~Fw~w 192 (1020)
+ +-..++..+|++|..|++++....| +...||..+.+
T Consensus 90 G~t~~~i~~~~~ak~~g~~vI~IT~~~~~--l~~~aD~~l~~ 129 (177)
T d1jeoa_ 90 GRTESVLTVAKKAKNINNNIIAIVCECGN--VVEFADLTIPL 129 (177)
T ss_dssp SCCHHHHHHHHHHHTTCSCEEEEESSCCG--GGGGCSEEEEC
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEECCCCC--HHHHCCCEEEE
T ss_conf 02689999999998759943677368886--79856836998
No 9
>d1vb3a1 c.79.1.1 (A:1-428) Threonine synthase {Escherichia coli [TaxId: 562]}
Probab=5.15 E-value=68 Score=7.61 Aligned_cols=63 Identities=19% Similarity=0.298 Sum_probs=27.5
Q ss_pred CEEECCCC-CCCCHHHHHHHHHHHHHHHCCCCCEEEEE--ECCCCHHHHHHHHH-HCCCEEEEECC-CCHHH
Q ss_conf 40220699-96502467999999999819998599999--28966499999997-29989998317-95009
Q 001724 114 NIAHVPHG-GKNSADRSLLVDLMYWVSQNPPPAHLFLI--SGDRDFASVLHRLR-MNNYNILLASR-ESASN 180 (1020)
Q Consensus 114 sLihvP~g-gKNAADi~LiIDaMdwl~~NP~pdtFVLI--SGDsDFtpLL~RLR-erGynVILa~p-~kTse 180 (1020)
+|-|-|++ =|+-+ ++++.-++.....+.. .+ +|+ |||-.-+-+ .-.+ ..|..|++..| ++.+.
T Consensus 97 ELfhGPT~aFKD~a-~~~~~~~~~~~~~~~~-~~-Il~ATSGDTG~Aa~-~a~~~~~~i~~~vl~P~g~vS~ 164 (428)
T d1vb3a1 97 ELFHGPTLAFKDFG-GRFMAQMLTHIAGDKP-VT-ILTATSGDTGAAVA-HAFYGLPNVKVVILYPRGKISP 164 (428)
T ss_dssp ECCCSTTSBTHHHH-HHHHHHHHHHHTTTCC-EE-EEEECSSSHHHHHH-HHTTTCTTEEEEEEEETTCSCH
T ss_pred EECCCCCCCCCCCH-HHHHHHHHHHHCCCCC-CE-EEECCCCCCCHHHH-HHHHCCCCCCEEEEECCCCCCH
T ss_conf 00158985424522-6689999752012332-13-66437877423689-9970766553288866888758
No 10
>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=5.12 E-value=68 Score=7.59 Aligned_cols=26 Identities=19% Similarity=0.434 Sum_probs=0.0
Q ss_pred EEEECCCCH--HHHHHHHHHCCCEEEEE
Q ss_conf 999289664--99999997299899983
Q 001724 148 FLISGDRDF--ASVLHRLRMNNYNILLA 173 (1020)
Q Consensus 148 VLISGDsDF--tpLL~RLRerGynVILa 173 (1020)
+||+|-..| ..|+..|.++|+.|+++
T Consensus 18 ILVTGgsGfIGs~lv~~L~~~g~~V~~~ 45 (363)
T d2c5aa1 18 ISITGAGGFIASHIARRLKHEGHYVIAS 45 (363)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred EEEECCCCHHHHHHHHHHHHCCCEEEEE
T ss_conf 9997888789999999999782989999
Done!