Query 001725
Match_columns 1020
No_of_seqs 427 out of 2954
Neff 6.9
Searched_HMMs 29240
Date Tue Mar 26 16:11:04 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001725.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1023-1026//hhsearch_pdb/001725hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3bdl_A Staphylococcal nuclease 1.0 1 1 730.8 56.0 524 377-990 22-570 (570)
2 3bdl_A Staphylococcal nuclease 1.0 1 1 524.0 50.2 522 3-735 16-569 (570)
3 2hqx_A P100 CO-activator tudor 1.0 1 1 345.3 9.7 229 758-1010 13-244 (246)
4 2wac_A CG7008-PA; unknown func 1.0 1 1 319.5 24.6 215 761-999 2-218 (218)
5 4b9x_A TDRD1, tudor domain-con 1.0 1 1 283.4 23.3 186 757-965 12-202 (226)
6 4b9w_A TDRD1, tudor domain-con 1.0 1 1 280.7 24.1 184 757-963 12-200 (201)
7 3ntk_A Maternal protein tudor; 1.0 1 1 239.8 17.2 164 762-954 2-166 (169)
8 4eqp_A Thermonuclease; staphyl 1.0 1 1 198.5 14.1 134 5-154 3-139 (143)
9 4eqp_A Thermonuclease; staphyl 1.0 1 1 172.2 14.1 129 186-369 8-141 (143)
10 2diq_A Tudor and KH domain-con 1.0 1 1 170.7 6.3 100 784-891 9-108 (110)
No 1
>3bdl_A Staphylococcal nuclease domain-containing protein 1; staphylococcal nuclease OB fold, tudor domain, cytoplasm, HOST-virus interaction, nucleus; HET: CIT; 1.90A {Homo sapiens}
Probab=1.00 E-value=1 Score=730.79 Aligned_cols=524 Identities=37% Similarity=0.589 Sum_probs=452.7
Q ss_pred CCCEEEEEEEEEECCEEEEEECCCCCCCCCCEEEEEEECCCCCCCC-CCCCCC-------CCCHHHHHHHHHHHHHCCCC
Q ss_conf 5520259999963748999808988889654069995103688878-999997-------44010899899998621894
Q 001725 377 DQNFTGKVVEVVSGDCIIVADDSIPYGNALAERRVNLSSIRCPKIG-NPRKDE-------KPAAYAREAREFLRTRLIGR 448 (1020)
Q Consensus 377 ~~~~~~~V~~V~~gd~i~i~~~~~~~~~~~~e~~v~L~~i~~p~~~-~~~~~~-------~~~~~~~ea~e~lR~~~iGk 448 (1020)
.+++.|+|++|++||||.|...+ +++++|+|++|++|++. +++++. .++||++|||||||++|+||
T Consensus 22 ~~~~~~~V~~V~DGDTi~v~~~~------g~~~~VRL~gIdaPe~~~~~~~~~~~~~~~~~~~p~g~eA~e~L~~~l~gk 95 (570)
T 3bdl_A 22 DKQFVAKVMQVLNADAIVVKLNS------GDYKTIHLSSIRPPRLEGENTQDKNKKLRPLYDIPYMFEAREFLRKKLIGK 95 (570)
T ss_dssp CSEEEEEEEEEETTTEEEEECTT------SCEEEEEETTEECCCCTTSCCGGGTTTCCHHHHSTTHHHHHHHHHHHHTTC
T ss_pred CCEEEEEEEEECCCCEEEEECCC------CCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 75799999999259889998799------978999998874887677777655544567666455899999999985898
Q ss_pred EEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE-EEEEEEEECCCCCCCCCCCHHH
Q ss_conf 999999565302223443444899999999998875644457999877655433301-1123699538988889971122
Q 001725 449 QVNVQMEYSRKVVVEAAPVAAGAKGPAGTKGPAGTKGQAAAKGPAGEESVGATETRI-IDFGSIFLLSPIKGEGDDASAV 527 (1020)
Q Consensus 449 ~v~~~~dy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~ 527 (1020)
+|.++++|.++.... . +..+.++ |.+++|++
T Consensus 96 ~V~~~~~~~~~~~~~--------------~--------------------~~~D~yg~R~la~v~~-------------- 127 (570)
T 3bdl_A 96 KVNVTVDYIRPASPA--------------T--------------------ETVPAFSERTCATVTI-------------- 127 (570)
T ss_dssp EEEEEEEEEESSCCC--------------S--------------------SCSSSSCCEEEEEEEE--------------
T ss_pred EEEEEEEEECCCCCC--------------C--------------------CCCCCCCCEEEEEECC--------------
T ss_conf 799999863146555--------------5--------------------6567778469999700--------------
Q ss_pred HCCCCCCCCCCCCHHHHHHHCCCCEEEECC-CCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCHH
Q ss_conf 002568999985236999861542445158-8432435899999999999843898778999994035517776100010
Q 001725 528 AQSNAAGQPAGVNVAELVVSRGLGNVINHR-DFEERSNYYDALLAAEARAKAGKKGCYSSKEPPVMHIQDLTMAPVKKAR 606 (1020)
Q Consensus 528 ~~~~~~~~~~g~n~~~~lv~~G~a~v~~~r-~~~~~s~~y~~L~~ae~~A~~~~~g~~~~~~~~~~~~~d~~~~~~~~ak 606 (1020)
+|.||++.||++|||.+.+|| ++++++.+|+.|++||++|+++++|+|+.+++++.+++|++. +..+++
T Consensus 128 ---------~g~~v~~~lv~~G~A~v~~~~~~~~~~~~~~~~l~~aE~~A~~~~~GlW~~~~~~~~~~~d~~~-~~~~~~ 197 (570)
T 3bdl_A 128 ---------GGINIAEALVSKGLATVIRYRQDDDQRSSHYDELLAAEARAIKNGKGLHSKKEVPIHRVADISG-DTQKAK 197 (570)
T ss_dssp ---------TTEEHHHHHHHTTSSEECCCSSTTSCCCTTHHHHHHHHHHHHHTTCGGGCCSCCCCCCCEECTT-CHHHHH
T ss_pred ---------CCCCHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCC-CHHHHH
T ss_conf ---------8852999998575879984057743247579999999999998379877899998661453587-667799
Q ss_pred CCCCCCCCCCCCCEEEEEEECCCEEEEEECCCCEEEEEEEECCCCCC----------CCCCCHHHHHHHHHHHHCCCEEE
Q ss_conf 00300014885077999994099899994498406999992346899----------89867399999999996495499
Q 001725 607 DFLPFLQRSRRIPAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPG----------RNERYSNEALLLMRQKILQRDVE 676 (1020)
Q Consensus 607 ~~l~~~~r~~~l~~vVe~V~~G~~~rv~ip~~~~~I~~~LaGI~~P~----------~~e~w~~EA~~flk~~ll~R~V~ 676 (1020)
+|++++++++++.|+|++|.||||+++++|+.++.++++|+||+||+ ..++|+.+|+.|+++++++|+|+
T Consensus 198 ~~l~~~~~~~~~~~~V~~V~DGDT~~v~~~~~~~~~~vRL~GIdaPe~~~~~~~~~~~~~~~g~eA~~~l~~~l~~r~V~ 277 (570)
T 3bdl_A 198 QFLPFLQRAGRSEAVVEYVFSGSRLKLYLPKETCLITFLLAGIECPRGARNLPGLVQEGEPFSEEATLFTKELVLQREVE 277 (570)
T ss_dssp HHHHHHHHTCEEEEEEEEESSSSEEEEEETTTTEEEEEEESSEECCCCCEEETTEEECCCTTHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHCCEEEEEEEEEECCCEEEEEECCCCCEEEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEE
T ss_conf 98778741883569999996899899998699949999999998998778788876646849999999999986698599
Q ss_pred EEEEEECCCCCEEEEEEECCCCHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC--C
Q ss_conf 99999878995999999499427889988399798320378999873799999999986035553455566212478--7
Q 001725 677 IEVETVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLEQAEKSAKSQKLKIWENYVEGEEVSNG--A 754 (1020)
Q Consensus 677 v~V~~~Dk~G~~~g~L~~~~~nI~~~Lv~~GLA~v~~~~s~~~~~~~~~L~~AE~~Ak~~k~glWk~~~~~~~~~~~--~ 754 (1020)
+.+.+.|++|++++++|.++.||+..||++|||+++ ++..+..+...|..||++||++++|||+.+.|...+... .
T Consensus 278 ~~~~~~D~ygR~la~v~~~~~~v~~~Lv~~GlA~~~--~~~~~~~~~~~~~~aE~~Ak~~~~GlW~~~~~~~~~~~~~~~ 355 (570)
T 3bdl_A 278 VEVESMDKAGNFIGWLHIDGANLSVLLVEHALSKVH--FTAERSSYYKSLLSAEEAAKQKKEKVWAHYEEQPVEEVMPVL 355 (570)
T ss_dssp EEEEEECTTSCEEEEEEETTEEHHHHHHHTTSSEEC--GGGTTSTTHHHHHHHHHHHHHHTCGGGC----------CCCC
T ss_pred EEEEEECCCCCEEEEEEECCEEHHHHHHHCCCCEEE--ECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHCCCCC
T ss_conf 999768588989999998998799999972991898--617773269999999999998388977665654100002235
Q ss_pred CCCCCCCCEEEEEEEEEECCCEEEEEECCC-HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEEE
Q ss_conf 655787629999999996098499997581-5699999999998702899988889867996999976899379999985
Q 001725 755 AVEGKQKEVLKVVVTEILGGGKFYVQQVGD-QKVASVQQQLASLNLQEAPVIGAFNPKKGEIVLAQFSADNSWNRAMIVN 833 (1020)
Q Consensus 755 ~~~~~~~~~~~V~Vt~V~sp~~Fyvq~~~~-~~l~~L~e~L~~~~~~~~p~~~~~~p~~G~~caA~fs~D~~WYRA~V~~ 833 (1020)
.......++++|+||+|.||++||||..+. ..|++||++|+.++....+...++.|++|++|+|+|+ |+.||||+|++
T Consensus 356 ~~~~~~~~~~~V~Vt~V~sp~~Fyvq~~~~~~~l~~l~~~l~~~~~~~~~l~~~~~~~~G~~c~a~~~-d~~wyRa~I~~ 434 (570)
T 3bdl_A 356 EEKERSASYKPVFVTEITDDLHFYVQDVETGTQLEKLMENMRNDIASHPPVEGSYAPRRGEFCIAKFV-DGEWYRARVEK 434 (570)
T ss_dssp CCSSCCCCCEEEEEEEECTTSEEEEEEGGGHHHHHHHHHHHHHHHHHSCCCTTCCCCCTTCEEEEECT-TSCEEEEEEEE
T ss_pred CCCCCCCCEEEEEEEEEECCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEC-CCCEEEEEEEE
T ss_conf 66777886799999999779759999888378999999999998731888787767984978999987-99799999999
Q ss_pred ECCCCCCCCCCEEEEEEEECCCCEEECCCCCCCCCCCCCCC--CCCEEEEEECCEECCCCCCCCHHHHHHHHHHCCCCCC
Q ss_conf 23665234697899999762882000388821489323699--9840899966413299999990999999942123479
Q 001725 834 APREKVESVNDKFEVFYIDYGNQELVPYNKLRPIDPSLSST--PPLAQLCSLAYIKIPALEDEYGPEAAEFLNEHTYNSS 911 (1020)
Q Consensus 834 ~~~~~~~~~~~~v~V~fIDyGn~e~V~~~~Lr~Lp~~f~~l--P~qA~~c~La~V~p~~~~~~w~~eA~~~l~~~llv~g 911 (1020)
+. ....+.|+||||||++.|+.++||+||++|+.+ |+||++|+|++|+|+. +.+|+.+|+++|++ ++.+
T Consensus 435 v~------~~~~~~V~fvDyGn~e~v~~~~Lr~l~~~f~~l~lP~qA~~c~La~v~pp~-~~~w~~ea~~~f~~--lv~~ 505 (570)
T 3bdl_A 435 VE------SPAKIHVFYIDYGNREVLPSTRLGTLSPAFSTRVLPAQATEYAFAFIQVPQ-DDDARTDAVDSVVR--DIQN 505 (570)
T ss_dssp EE------ETTEEEEEETTTCCEEEECGGGEECCCGGGSTTTSCCCCEEEEETTEECCS-SHHHHHHHHHHHHH--HHTT
T ss_pred EC------CCCEEEEEEEECCCEEEEEHHHCCCCCHHHHCCCCCCCEEEEEECCEECCC-CCCCCHHHHHHHHH--HHCC
T ss_conf 76------998599999947982998779873588899369998146899989769689-88873999999999--8689
Q ss_pred CEEEEEEEEEECCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8899999999189984357897626999999449987388899885981443234459611599999999999999760
Q 001725 912 NEFRALVEERDSSGGKLKGQGTGTLLHVTLVAVDAEISINTLMVQEGLARVERRKRWGSRDRQAALENLEKFQEEAKTA 990 (1020)
Q Consensus 912 k~l~a~V~~~~~~~~~v~~~~~~~~~~V~L~~~~~~~sIn~~LV~~GlA~~~~~~~~~~~~~~~~~~~l~~aq~~Ak~~ 990 (1020)
+.+.++|++... +.++|+|++++...|||+.||++|||+.++++. ..++++++.|+++|+.||++
T Consensus 506 k~l~~~V~~~~~-----------~~~~V~L~~~~~~~sIn~~Lv~~G~A~~~~~~~---~~~~~~~~~l~~~q~~Ak~~ 570 (570)
T 3bdl_A 506 TQCLLNVEHLSA-----------GCPHVTLQFADSKGDVGLGLVKEGLVMVEVRKE---KQFQKVITEYLNAQESAKSA 570 (570)
T ss_dssp EEEEEEEEECCS-----------SSCEEEEEETTTCCBHHHHHHHTTSSEECCCCS---GGGHHHHHHHHHHHHTC---
T ss_pred CEEEEEEEEEEC-----------CCEEEEEEECCCCCCHHHHHHHCCCEECCHHHH---HHHHHHHHHHHHHHHHHHCC
T ss_conf 879999999958-----------917999997999850799998789818552011---44899999999999997409
No 2
>3bdl_A Staphylococcal nuclease domain-containing protein 1; staphylococcal nuclease OB fold, tudor domain, cytoplasm, HOST-virus interaction, nucleus; HET: CIT; 1.90A {Homo sapiens}
Probab=1.00 E-value=1 Score=523.97 Aligned_cols=522 Identities=26% Similarity=0.352 Sum_probs=358.6
Q ss_pred CCCCCCCCEEEEEEEEECCCCEEEEEECCCCCCCCCCEEEEEEEECCCCCCCCCCC----------CCCHHHHHHHHHHH
Q ss_conf 98778998088999697369868995189999999970499998015889898899----------99644999999999
Q 001725 3 TPAAAGGGWYRARVKAVPSGDSLVITALSNPNPGPPREKTLTLSSIITPRLARRGG----------LDEPFAWDSREFLR 72 (1020)
Q Consensus 3 ~~~~~~~~~~~~~V~~V~sGDTi~v~~~~~~~~g~~~~~~vrL~~IdaP~~~~~~~----------~~ep~a~eAre~Lr 72 (1020)
+........+.|+|++|+|||||+|...+ +++++|||+||||||+.++++ +++|||++||+|||
T Consensus 16 ~~~~~~~~~~~~~V~~V~DGDTi~v~~~~------g~~~~VRL~gIdaPe~~~~~~~~~~~~~~~~~~~p~g~eA~e~L~ 89 (570)
T 3bdl_A 16 PRGSHMDKQFVAKVMQVLNADAIVVKLNS------GDYKTIHLSSIRPPRLEGENTQDKNKKLRPLYDIPYMFEAREFLR 89 (570)
T ss_dssp -----CCSEEEEEEEEEETTTEEEEECTT------SCEEEEEETTEECCCCTTSCCGGGTTTCCHHHHSTTHHHHHHHHH
T ss_pred CCCCCCCCEEEEEEEEECCCCEEEEECCC------CCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 12456775799999999259889998799------978999998874887677777655544567666455899999999
Q ss_pred HHCCCCEEEEEECE---------ECCCCC-CEEEEEEECCCCHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 76179969999911---------037999-37999993992288899773988999817867999046999999999999
Q 001725 73 KLCIGKEVTFRVDY---------AVPNIG-REFGTVILGDKNVAMLVVSEGWAKVKEQGSQKGEASPFLAELLRLEEQAK 142 (1020)
Q Consensus 73 ~~l~Gk~V~~~~~~---------~~~~~g-R~~g~v~~~g~~i~~~lv~~G~A~v~~~~~~~~~~~~~~~~l~~ae~~Ak 142 (1020)
++++||+|.+.+++ .+|+|| |.+|+||++|.|||++||++|||+++.++....+++.+|++|.+||++||
T Consensus 90 ~~l~gk~V~~~~~~~~~~~~~~~~~D~yg~R~la~v~~~g~~v~~~lv~~G~A~v~~~~~~~~~~~~~~~~l~~aE~~A~ 169 (570)
T 3bdl_A 90 KKLIGKKVNVTVDYIRPASPATETVPAFSERTCATVTIGGINIAEALVSKGLATVIRYRQDDDQRSSHYDELLAAEARAI 169 (570)
T ss_dssp HHHTTCEEEEEEEEEESSCCCSSCSSSSCCEEEEEEEETTEEHHHHHHHTTSSEECCCSSTTSCCCTTHHHHHHHHHHHH
T ss_pred HHHCCCEEEEEEEEECCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHHHH
T ss_conf 98589879999986314655556567778469999700885299999857587998405774324757999999999999
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH-HCCCCCCCEEEEEECCCCEEEEEECCCCEEEEEEEEEECC
Q ss_conf 809996679988843432248998678995233788764-4079952289999616999999972896189999722107
Q 001725 143 LQGLGRWSKVPGAAEASIRNLPPSAIGDSSNFNAMALLD-ANKGRPMQGIVEQARDGSTLRVYLLPEFQFVQVFVAGIQA 221 (1020)
Q Consensus 143 ~~k~GiWs~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Ve~V~dG~t~~v~l~~~~~~~~v~l~Gi~~ 221 (1020)
++++|||+.++.+. ..++++.++ ..++++|++ .++++++.|+|++|+|||||+|+++++++.++|+|+||+|
T Consensus 170 ~~~~GlW~~~~~~~-~~~~d~~~~------~~~~~~~l~~~~~~~~~~~~V~~V~DGDT~~v~~~~~~~~~~vRL~GIda 242 (570)
T 3bdl_A 170 KNGKGLHSKKEVPI-HRVADISGD------TQKAKQFLPFLQRAGRSEAVVEYVFSGSRLKLYLPKETCLITFLLAGIEC 242 (570)
T ss_dssp HTTCGGGCCSCCCC-CCCEECTTC------HHHHHHHHHHHHHTCEEEEEEEEESSSSEEEEEETTTTEEEEEEESSEEC
T ss_pred HHCCCCCCCCCCCC-CEEEECCCC------HHHHHHHHHHHHHCCEEEEEEEEEECCCEEEEEECCCCCEEEEEEEEEEC
T ss_conf 83798778999986-614535876------67799987787418835699999968998999986999499999999989
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEEECCC
Q ss_conf 98889998544686544578732000025212678875200247999998335999999999771595699999443688
Q 001725 222 PAVARRPAAIVDTDTEETNGDVSAAEAVAPLNSAQRLAASTASAGQQSTDEPFALDAKYFTEMRVLNREVRIVLEGVDKF 301 (1020)
Q Consensus 222 P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ep~a~eAk~f~~~~ll~r~V~i~~~~~d~~ 301 (1020)
||+.+.. .| . ..+.+|||.||+.|++.+|++|+|+|.+++.|+|
T Consensus 243 Pe~~~~~-----------~~--------------------~-----~~~~~~~g~eA~~~l~~~l~~r~V~~~~~~~D~y 286 (570)
T 3bdl_A 243 PRGARNL-----------PG--------------------L-----VQEGEPFSEEATLFTKELVLQREVEVEVESMDKA 286 (570)
T ss_dssp CCCCEEE-----------TT--------------------E-----EECCCTTHHHHHHHHHHHHTTCEEEEEEEEECTT
T ss_pred CCCCCCC-----------CC--------------------C-----CCCCCHHHHHHHHHHHHHHCCCEEEEEEEEECCC
T ss_conf 9877878-----------88--------------------7-----6646849999999999986698599999768588
Q ss_pred CCEEEEEEECCCCCHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC-------CC
Q ss_conf 97899999669987467999998627589873266544279999999999999880555666778999994-------21
Q 001725 302 KNLIGSVFYPDGETAKDLAMELVENGLAKYIEWSANMMEEDAKRRLKAADLQAKKTRLRMWTNYVPPQSNS-------KA 374 (1020)
Q Consensus 302 g~~~g~v~~~~g~~~~di~~~Ll~~Gla~~~~~~~~~~~~~~~~~l~~ae~~Ak~~k~g~W~~~~~~~~~~-------~~ 374 (1020)
||++|+|+++ |.+ |+++||++|||+++ ++..... +...|++||++||++|+|||+++.|+.... ..
T Consensus 287 gR~la~v~~~-~~~---v~~~Lv~~GlA~~~-~~~~~~~--~~~~~~~aE~~Ak~~~~GlW~~~~~~~~~~~~~~~~~~~ 359 (570)
T 3bdl_A 287 GNFIGWLHID-GAN---LSVLLVEHALSKVH-FTAERSS--YYKSLLSAEEAAKQKKEKVWAHYEEQPVEEVMPVLEEKE 359 (570)
T ss_dssp SCEEEEEEET-TEE---HHHHHHHTTSSEEC-GGGTTST--THHHHHHHHHHHHHHTCGGGC----------CCCCCCSS
T ss_pred CCEEEEEEEC-CEE---HHHHHHHCCCCEEE-ECCCCCC--HHHHHHHHHHHHHHHCCCCCCCCCCCCCHHCCCCCCCCC
T ss_conf 9899999989-987---99999972991898-6177732--699999999999983889776656541000022356677
Q ss_pred CCCCCEEEEEEEEEECCEEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 23552025999996374899980898888965406999510368887899999744010899899998621894999999
Q 001725 375 IHDQNFTGKVVEVVSGDCIIVADDSIPYGNALAERRVNLSSIRCPKIGNPRKDEKPAAYAREAREFLRTRLIGRQVNVQM 454 (1020)
Q Consensus 375 ~~~~~~~~~V~~V~~gd~i~i~~~~~~~~~~~~e~~v~L~~i~~p~~~~~~~~~~~~~~~~ea~e~lR~~~iGk~v~~~~ 454 (1020)
...+.+.+.|+.|.+...|.++..+.. . . | +-..-+-.+++.+..
T Consensus 360 ~~~~~~~V~Vt~V~sp~~Fyvq~~~~~------~-~--l-----------------~~l~~~l~~~~~~~~--------- 404 (570)
T 3bdl_A 360 RSASYKPVFVTEITDDLHFYVQDVETG------T-Q--L-----------------EKLMENMRNDIASHP--------- 404 (570)
T ss_dssp CCCCCEEEEEEEECTTSEEEEEEGGGH------H-H--H-----------------HHHHHHHHHHHHHSC---------
T ss_pred CCCCEEEEEEEEEECCCEEEEEECCCH------H-H--H-----------------HHHHHHHHHHHHCCC---------
T ss_conf 788679999999977975999988837------8-9--9-----------------999999999873188---------
Q ss_pred EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCHHHHCCCCCC
Q ss_conf 56530222344344489999999999887564445799987765543330111236995389888899711220025689
Q 001725 455 EYSRKVVVEAAPVAAGAKGPAGTKGPAGTKGQAAAKGPAGEESVGATETRIIDFGSIFLLSPIKGEGDDASAVAQSNAAG 534 (1020)
Q Consensus 455 dy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 534 (1020)
+. .+ .+ ....|.+
T Consensus 405 ----~l-----------------~~--------------------~~---~~~~G~~----------------------- 417 (570)
T 3bdl_A 405 ----PV-----------------EG--------------------SY---APRRGEF----------------------- 417 (570)
T ss_dssp ----CC-----------------TT--------------------CC---CCCTTCE-----------------------
T ss_pred ----CC-----------------CC--------------------CC---CCCCCCE-----------------------
T ss_conf ----87-----------------87--------------------76---7984978-----------------------
Q ss_pred CCCCCCHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCHHCCCCCCCC
Q ss_conf 99985236999861542445158843243589999999999984389877899999403551777610001000300014
Q 001725 535 QPAGVNVAELVVSRGLGNVINHRDFEERSNYYDALLAAEARAKAGKKGCYSSKEPPVMHIQDLTMAPVKKARDFLPFLQR 614 (1020)
Q Consensus 535 ~~~g~n~~~~lv~~G~a~v~~~r~~~~~s~~y~~L~~ae~~A~~~~~g~~~~~~~~~~~~~d~~~~~~~~ak~~l~~~~r 614 (1020)
+++ .+. | ..||.+.+.. +.+. ......+.|+. |.. .++.. .
T Consensus 418 -----c~a------------~~~-d---~~wyRa~I~~----------v~~~-~~~~V~fvDyG--n~e----~v~~~-~ 458 (570)
T 3bdl_A 418 -----CIA------------KFV-D---GEWYRARVEK----------VESP-AKIHVFYIDYG--NRE----VLPST-R 458 (570)
T ss_dssp -----EEE------------ECT-T---SCEEEEEEEE----------EEET-TEEEEEETTTC--CEE----EECGG-G
T ss_pred -----EEE------------EEC-C---CCEEEEEEEE----------ECCC-CEEEEEEEECC--CEE----EEEHH-H
T ss_conf -----999------------987-9---9799999999----------7699-85999999479--829----98779-8
Q ss_pred CCCCCEEEEEEECCCEEEE-EECCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEEECCCCCEEEEEE
Q ss_conf 8850779999940998999-944984069999923468998986739999999999649549999999878995999999
Q 001725 615 SRRIPAVVEYVLSGHRFKV-LIPKETCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQRDVEIEVETVDRTGTFLGSLW 693 (1020)
Q Consensus 615 ~~~l~~vVe~V~~G~~~rv-~ip~~~~~I~~~LaGI~~P~~~e~w~~EA~~flk~~ll~R~V~v~V~~~Dk~G~~~g~L~ 693 (1020)
-+.++. .|.. .+|. +++.|+|+||.+|. +..|+.+|..+|++++.++.+.+.|...+ .|.+++.|+
T Consensus 459 Lr~l~~---------~f~~l~lP~--qA~~c~La~v~pp~-~~~w~~ea~~~f~~lv~~k~l~~~V~~~~-~~~~~V~L~ 525 (570)
T 3bdl_A 459 LGTLSP---------AFSTRVLPA--QATEYAFAFIQVPQ-DDDARTDAVDSVVRDIQNTQCLLNVEHLS-AGCPHVTLQ 525 (570)
T ss_dssp EECCCG---------GGSTTTSCC--CCEEEEETTEECCS-SHHHHHHHHHHHHHHHTTEEEEEEEEECC-SSSCEEEEE
T ss_pred CCCCCH---------HHHCCCCCC--CEEEEEECCEECCC-CCCCCHHHHHHHHHHHCCCEEEEEEEEEE-CCCEEEEEE
T ss_conf 735888---------993699981--46899989769689-88873999999999868987999999995-891799999
Q ss_pred EC--CCCHHHHHHHCCCEEEEEECCCCCC-CCHHHHHHHHHHHHH
Q ss_conf 49--9427889988399798320378999-873799999999986
Q 001725 694 ES--RTNVAVILLEAGLAKLQTSFGSDRI-PDSHLLEQAEKSAKS 735 (1020)
Q Consensus 694 ~~--~~nI~~~Lv~~GLA~v~~~~s~~~~-~~~~~L~~AE~~Ak~ 735 (1020)
.. +.+|+..|+++|||...... ..+. .....|+.+|+.||.
T Consensus 526 ~~~~~~sIn~~Lv~~G~A~~~~~~-~~~~~~~~~~l~~~q~~Ak~ 569 (570)
T 3bdl_A 526 FADSKGDVGLGLVKEGLVMVEVRK-EKQFQKVITEYLNAQESAKS 569 (570)
T ss_dssp ETTTCCBHHHHHHHTTSSEECCCC-SGGGHHHHHHHHHHHHTC--
T ss_pred ECCCCCCHHHHHHHCCCEECCHHH-HHHHHHHHHHHHHHHHHHHC
T ss_conf 799985079999878981855201-14489999999999999740
No 3
>2hqx_A P100 CO-activator tudor domain; human P100 tudor domain, proteolytic fragment, PSI, structural genomics; 1.42A {Homo sapiens} SCOP: b.34.9.1 PDB: 2hqe_A 3omc_A* 3omg_A* 2o4x_A 2e6n_A 2o4x_B
Probab=1.00 E-value=1 Score=345.28 Aligned_cols=229 Identities=31% Similarity=0.529 Sum_probs=198.6
Q ss_pred CCCCCEEEEEEEEEECCCEEEEEECC-CHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEEEECC
Q ss_conf 78762999999999609849999758-15699999999998702899988889867996999976899379999985236
Q 001725 758 GKQKEVLKVVVTEILGGGKFYVQQVG-DQKVASVQQQLASLNLQEAPVIGAFNPKKGEIVLAQFSADNSWNRAMIVNAPR 836 (1020)
Q Consensus 758 ~~~~~~~~V~Vt~V~sp~~Fyvq~~~-~~~l~~L~e~L~~~~~~~~p~~~~~~p~~G~~caA~fs~D~~WYRA~V~~~~~ 836 (1020)
.+.+++++|+||+|.||++||||..+ ...++.||++|+.++....+..+++.|++|++|+|+|+ |+.||||+|+++.
T Consensus 13 ~~~~~~~~V~Vt~v~~p~~f~vq~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~G~~c~a~~~-d~~wyRa~V~~~~- 90 (246)
T 2hqx_A 13 ERSASYKPVFVTEITDDLHFYVQDVETGTQFQKLMENMRNDIASHPPVEGSYAPRRGEFCIAKFV-DGEWYRARVEKVE- 90 (246)
T ss_dssp ----------------------------CHHHHHHHHHHHHHHHSCCCTTTCCCCTTCEEEEECT-TSCEEEEEEEEEE-
T ss_pred CCCCCEEEEEEEEECCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECC-CCCEEEEEEEEEC-
T ss_conf 78887899999998789989999899589999999999998833899777877997999999907-9979999999976-
Q ss_pred CCCCCCCCEEEEEEEECCCCEEECCCCCCCCCCCCC--CCCCCEEEEEECCEECCCCCCCCHHHHHHHHHHCCCCCCCEE
Q ss_conf 652346978999997628820003888214893236--999840899966413299999990999999942123479889
Q 001725 837 EKVESVNDKFEVFYIDYGNQELVPYNKLRPIDPSLS--STPPLAQLCSLAYIKIPALEDEYGPEAAEFLNEHTYNSSNEF 914 (1020)
Q Consensus 837 ~~~~~~~~~v~V~fIDyGn~e~V~~~~Lr~Lp~~f~--~lP~qA~~c~La~V~p~~~~~~w~~eA~~~l~~~llv~gk~l 914 (1020)
....+.|+||||||++.|+.++||+||++|+ .||+||++|+|++|+||. ...|..+|..+|.+ ++.++.+
T Consensus 91 -----~~~~~~V~~vDyGn~~~v~~~~lr~l~~~~~~~~lp~~a~~~~L~~v~~p~-~~~~~~eA~~~l~~--lv~~k~v 162 (246)
T 2hqx_A 91 -----SPAKIHVFYIDYGNREVLPSTRLGTLSPAFSTRVLPAQATEYAFAFIQVPQ-DDDARTDAVDSVVR--DIQNTQC 162 (246)
T ss_dssp -----ETTEEEEEETTTCCEEEECGGGEECCCGGGSTTTSCCCC------------------------------------
T ss_pred -----CCCEEEEEEEECCCEEEEEHHHHHCCCHHHCCCCCCHHHHHHHHHCEECCC-CCCCHHHHHHHHHH--HHCCCEE
T ss_conf -----998599999807985998089941689767577896565234352366688-85106999999999--8659889
Q ss_pred EEEEEEEECCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 99999991899843578976269999994499873888998859814432344596115999999999999997604664
Q 001725 915 RALVEERDSSGGKLKGQGTGTLLHVTLVAVDAEISINTLMVQEGLARVERRKRWGSRDRQAALENLEKFQEEAKTARIGM 994 (1020)
Q Consensus 915 ~a~V~~~~~~~~~v~~~~~~~~~~V~L~~~~~~~sIn~~LV~~GlA~~~~~~~~~~~~~~~~~~~l~~aq~~Ak~~r~gi 994 (1020)
.++|...+. +..+|+|++.+...+||+.||++|||.+.+... ....+..+.|+++|+.||++|+||
T Consensus 163 ~~~v~~~d~-----------g~~~v~L~~~~~~~~In~~LV~~GlA~~~~~~~---~~~~~~~~~~~~~e~~Ar~~r~Gl 228 (246)
T 2hqx_A 163 LLNVEHLSA-----------GCPHVTLQFADSKGDVGLGLVKEGLVMVEVRKE---KQFQKVITEYLNAQESAKSARLNL 228 (246)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEEEEECC-----------CEEEEEEEECCCCCCHHHHHHHCCCEEECCCCH---HHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 999999239-----------947999995999756899998788878034321---567999999999999998715683
Q ss_pred CCCCCCCCCCCCCCCC
Q ss_conf 2128999989999963
Q 001725 995 WQYGDIQSDDEDPLPS 1010 (1020)
Q Consensus 995 W~yGD~~~dde~~~~~ 1010 (1020)
|+|||+++|||+|||.
T Consensus 229 W~~gd~~~dd~~~~~~ 244 (246)
T 2hqx_A 229 WRYGDFRADDADEFGY 244 (246)
T ss_dssp ----------------
T ss_pred CCCCCCCCCCCCCCCC
T ss_conf 4279988242433577
No 4
>2wac_A CG7008-PA; unknown function, tudor, beta-barrel, nuclease domain, tudor P100, SND1, methylated arginine, SDMA, splicing; 2.10A {Drosophila melanogaster}
Probab=1.00 E-value=1 Score=319.54 Aligned_cols=215 Identities=31% Similarity=0.516 Sum_probs=189.6
Q ss_pred CCEEEEEEEEEECCCEEEEEECCC-HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEEEECCCCC
Q ss_conf 629999999996098499997581-5699999999998702899988889867996999976899379999985236652
Q 001725 761 KEVLKVVVTEILGGGKFYVQQVGD-QKVASVQQQLASLNLQEAPVIGAFNPKKGEIVLAQFSADNSWNRAMIVNAPREKV 839 (1020)
Q Consensus 761 ~~~~~V~Vt~V~sp~~Fyvq~~~~-~~l~~L~e~L~~~~~~~~p~~~~~~p~~G~~caA~fs~D~~WYRA~V~~~~~~~~ 839 (1020)
.++++|+||+|.||++||+|..+. ..++.|+++|+.++.+..+...++.|++|++|+|+|++|+.||||+|+++.
T Consensus 2 ~~~~~V~Vt~v~~p~~f~vq~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~g~~c~a~~~~d~~wyRa~V~~v~---- 77 (218)
T 2wac_A 2 VNYENVIVTEITETLTFFAQSVESGSKLESLMSKLHADFQSNPPIAGSYTPKRGDLVAAQFTLDNQWYRAKVERVQ---- 77 (218)
T ss_dssp CCCEEEEEEEECTTSEEEEEEGGGHHHHHHHHHHHHHHHHHSCCCTTSCCCCTTCEEEEECTTTCCEEEEEEEEEE----
T ss_pred CCEEEEEEEEECCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCEEEEEEEEEEC----
T ss_conf 8269999999859988999989978999999999999885199978875588599999999999929999999946----
Q ss_pred CCCCCEEEEEEEECCCCEEECCCCCCCCCCCCCCCCCCEEEEEECCEECCCCCCCCHHHHHHHHHHCCCCCCCEEEEEEE
Q ss_conf 34697899999762882000388821489323699984089996641329999999099999994212347988999999
Q 001725 840 ESVNDKFEVFYIDYGNQELVPYNKLRPIDPSLSSTPPLAQLCSLAYIKIPALEDEYGPEAAEFLNEHTYNSSNEFRALVE 919 (1020)
Q Consensus 840 ~~~~~~v~V~fIDyGn~e~V~~~~Lr~Lp~~f~~lP~qA~~c~La~V~p~~~~~~w~~eA~~~l~~~llv~gk~l~a~V~ 919 (1020)
++.+.|+||||||++.|+.++||+||++|+.+|+||++|+|++|+||. +..|+.+|.++|++ ++.++.+.++|.
T Consensus 78 ---~~~~~V~~vDyG~~~~v~~~~l~~l~~~~~~~p~~a~~~~Lagv~~p~-~~~w~~eA~~~l~~--lv~~k~v~~~v~ 151 (218)
T 2wac_A 78 ---GSNATVLYIDYGNKETLPTNRLAALPPAFSSEKPYATEYALALVALPT-DNEDKEEALRAFSE--DVLNHKVQLNVE 151 (218)
T ss_dssp ---TTEEEEEETTTCCEEEEEGGGEEECCGGGSSSCCSEEEEEETTEECCS-SHHHHHHHHHHHHH--HHBTCEEEEEEE
T ss_pred ---CCEEEEEEEECCCEEEECHHHCCCCCHHHCCCCCCEEEEEECCEECCC-CCCHHHHHHHHHHH--HHCCCEEEEEEE
T ss_conf ---990999998349969971698030786664698320599989779799-85308999999999--866977999999
Q ss_pred EEECCCCCCCCCCCCCE-EEEEEEECCCCCCHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 99189984357897626-99999944998738889988598144323445961159999999999999976046642128
Q 001725 920 ERDSSGGKLKGQGTGTL-LHVTLVAVDAEISINTLMVQEGLARVERRKRWGSRDRQAALENLEKFQEEAKTARIGMWQYG 998 (1020)
Q Consensus 920 ~~~~~~~~v~~~~~~~~-~~V~L~~~~~~~sIn~~LV~~GlA~~~~~~~~~~~~~~~~~~~l~~aq~~Ak~~r~giW~yG 998 (1020)
..+ . +. ++|+|++.+++.+||+.||++|||.+.++.. ....+..+.|+++|+.||++|+|||+||
T Consensus 152 ~~d-~----------g~~~~V~L~~~~~~~~in~~Lv~~G~A~~~~~~~---~~~~~~~~~~~~~e~~Ar~~r~GlW~~g 217 (218)
T 2wac_A 152 LKV-T----------GSPNLATLRDPTTKVDFGKQLVAEGLVLAEQRGE---RKLKELVDQYKAAQEAARVAHLAIWKYG 217 (218)
T ss_dssp ECC-T----------TSCEEEEEECTTTCCBHHHHHHHTTSSEECCCCC---GGGHHHHHHHHHHHHHHHHTTCGGGTTC
T ss_pred EEC-C----------CCEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCC---HHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 974-9----------9628999993898734899998789941541012---3389999999999999998337876368
Q ss_pred C
Q ss_conf 9
Q 001725 999 D 999 (1020)
Q Consensus 999 D 999 (1020)
|
T Consensus 218 d 218 (218)
T 2wac_A 218 D 218 (218)
T ss_dssp -
T ss_pred C
T ss_conf 8
No 5
>4b9x_A TDRD1, tudor domain-containing protein 1; replication; 2.80A {Mus musculus}
Probab=1.00 E-value=1 Score=283.41 Aligned_cols=186 Identities=26% Similarity=0.374 Sum_probs=165.3
Q ss_pred CCCCCCEEEEEEEEEECCCEEEEEECCC---HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEEE
Q ss_conf 5787629999999996098499997581---5699999999998702899988889867996999976899379999985
Q 001725 757 EGKQKEVLKVVVTEILGGGKFYVQQVGD---QKVASVQQQLASLNLQEAPVIGAFNPKKGEIVLAQFSADNSWNRAMIVN 833 (1020)
Q Consensus 757 ~~~~~~~~~V~Vt~V~sp~~Fyvq~~~~---~~l~~L~e~L~~~~~~~~p~~~~~~p~~G~~caA~fs~D~~WYRA~V~~ 833 (1020)
+++.+.+++|+||+|.||++||||..+. ..|+.|+++|+.++....+. .+.|++|++|+|+|++|+.||||+|++
T Consensus 12 ~l~~~~~~~V~Vt~v~sP~~Fyvq~~~~~~~~~L~~L~~~l~~~~~~~~~~--~~~~~~G~~c~a~~~~d~~WyRa~V~~ 89 (226)
T 4b9x_A 12 EFTVDETVDVVVCMMYSPGEFYCHFLKDDALEKLDDLNQSLADYCAQKPPN--GFKAEIGRPCCAFFSGDGNWYRALVKE 89 (226)
T ss_dssp CCCTTCEEEEEEEEEEETTEEEEEECCTTHHHHHHHHHHHHHHHTSSSCC----CCCCTTCEEEEEETTTTEEEEEEEEE
T ss_pred ECCCCCEEEEEEEEEECCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCC--CCCCCCCCEEEEEECCCCEEEEEEEEE
T ss_conf 759999899999999079999999868833999999999999988418987--778989989999988899499899999
Q ss_pred ECCCCCCCCCCEEEEEEEECCCCEEECCCCCCCCCCCCCCCCCCEEEEEECCEECCCCCCCCHHHHHHHHHHCCCCCCCE
Q ss_conf 23665234697899999762882000388821489323699984089996641329999999099999994212347988
Q 001725 834 APREKVESVNDKFEVFYIDYGNQELVPYNKLRPIDPSLSSTPPLAQLCSLAYIKIPALEDEYGPEAAEFLNEHTYNSSNE 913 (1020)
Q Consensus 834 ~~~~~~~~~~~~v~V~fIDyGn~e~V~~~~Lr~Lp~~f~~lP~qA~~c~La~V~p~~~~~~w~~eA~~~l~~~llv~gk~ 913 (1020)
+. .++.++|+||||||++.|+.++||+||++|+.+|+||++|+|++|+|+ +..|+.+|+.+|++ ++.++.
T Consensus 90 ~~------~~~~~~V~~vDyGn~~~v~~~~l~~l~~~f~~lP~qA~~c~L~~v~p~--~~~w~~ea~~~f~~--l~~~k~ 159 (226)
T 4b9x_A 90 IL------PSGNVKVHFVDYGNVEEVTTDQLQAILPQFLLLPFQGMQCWLVDIQPP--NKHWTKEATARFQA--CVVGLK 159 (226)
T ss_dssp EC------SSSEEEEECTTTCCEEEEEGGGEECCCGGGSSSCBCCEEEEESSEECS--SSSCCHHHHHHHHH--HHTTCC
T ss_pred EC------CCCEEEEEEEECCCEEEEEHHHHCCCHHHHCCCCCCEEEEEEECEECC--CCCCCHHHHHHHHH--HHCCCE
T ss_conf 87------999599999813988999789916385887156621699999047989--99998999999999--878986
Q ss_pred EEEEEEEEECCCCCCCCCCCCCEEEEEEEECC--CCCCHHHHHHHCCCEEEECC
Q ss_conf 99999999189984357897626999999449--98738889988598144323
Q 001725 914 FRALVEERDSSGGKLKGQGTGTLLHVTLVAVD--AEISINTLMVQEGLARVERR 965 (1020)
Q Consensus 914 l~a~V~~~~~~~~~v~~~~~~~~~~V~L~~~~--~~~sIn~~LV~~GlA~~~~~ 965 (1020)
+.++|.....+ .++|.|++.+ .+.+||+.||++|||.....
T Consensus 160 l~~~V~~~~~~-----------~~~V~L~d~~~~~~~~I~~~Lv~~gla~~~~~ 202 (226)
T 4b9x_A 160 LQARVVEITAN-----------GVGVELTDLSTPYPKIISDVLIREQLVLRCGS 202 (226)
T ss_dssp EEEEEEEECSS-----------CEEEEEEECSSSSCEEHHHHHHHTTSSEECC-
T ss_pred EEEEEEEEECC-----------EEEEEEEECCCCCCCCHHHHHHHCCCCCCCCC
T ss_conf 99999999399-----------27999998899998647999987799604688
No 6
>4b9w_A TDRD1, tudor domain-containing protein 1; replication; HET: 2MR; 2.10A {Mus musculus}
Probab=1.00 E-value=1 Score=280.70 Aligned_cols=184 Identities=27% Similarity=0.379 Sum_probs=163.9
Q ss_pred CCCCCCEEEEEEEEEECCCEEEEEECCC---HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEEE
Q ss_conf 5787629999999996098499997581---5699999999998702899988889867996999976899379999985
Q 001725 757 EGKQKEVLKVVVTEILGGGKFYVQQVGD---QKVASVQQQLASLNLQEAPVIGAFNPKKGEIVLAQFSADNSWNRAMIVN 833 (1020)
Q Consensus 757 ~~~~~~~~~V~Vt~V~sp~~Fyvq~~~~---~~l~~L~e~L~~~~~~~~p~~~~~~p~~G~~caA~fs~D~~WYRA~V~~ 833 (1020)
+++.++.++|+||+|.||++||||..++ ..|+.|+++|++++.+..+. .+.|++|++|+|+|++|+.||||+|++
T Consensus 12 ~l~~~~~~~V~Vt~v~sP~~Fyvq~~~~~~~~~l~~L~~~l~~~~~~~~~~--~~~~~~G~~c~a~~~~d~~wyRa~V~~ 89 (201)
T 4b9w_A 12 EFTVDETVDVVVCMMYSPGEFYCHFLKDDALEKLDDLNQSLADYCAQKPPN--GFKAEIGRPCCAFFSGDGNWYRALVKE 89 (201)
T ss_dssp CCCTTCEEEEEEEEEEETTEEEEEECCTTHHHHHHHHHHHHHHHHHSSSCC--CCCCCTTCEEEEEETTTTEEEEEEEEE
T ss_pred ECCCCCEEEEEEEEEECCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCC--CCCCCCCCEEEEEECCCCEEEEEEEEE
T ss_conf 759999899999999379999999888826999999999999988548987--778988989999988899299899999
Q ss_pred ECCCCCCCCCCEEEEEEEECCCCEEECCCCCCCCCCCCCCCCCCEEEEEECCEECCCCCCCCHHHHHHHHHHCCCCCCCE
Q ss_conf 23665234697899999762882000388821489323699984089996641329999999099999994212347988
Q 001725 834 APREKVESVNDKFEVFYIDYGNQELVPYNKLRPIDPSLSSTPPLAQLCSLAYIKIPALEDEYGPEAAEFLNEHTYNSSNE 913 (1020)
Q Consensus 834 ~~~~~~~~~~~~v~V~fIDyGn~e~V~~~~Lr~Lp~~f~~lP~qA~~c~La~V~p~~~~~~w~~eA~~~l~~~llv~gk~ 913 (1020)
+. .++.++|+||||||++.|+.++||+||++|+.+|+||++|+|++|+|+ +..|+.+|+++|++ ++.++.
T Consensus 90 ~~------~~~~~~V~~vDyG~~~~v~~~~l~~l~~~f~~lP~qA~~c~L~~v~p~--~~~w~~ea~~~f~~--l~~~k~ 159 (201)
T 4b9w_A 90 IL------PSGNVKVHFVDYGNVEEVTTDQLQAILPQFLLLPFQGMQCWLVDIQPP--NKHWTKEATARFQA--CVVGLK 159 (201)
T ss_dssp EC------TTSCEEEEETTTCCEEEECGGGEEECCGGGGSSCBCCEEEEESSEECS--SSSCCHHHHHHHHH--HHTTCC
T ss_pred EC------CCCEEEEEEECCCCEEEEEHHHHCCCHHHHCCCCHHHEEEEECCEECC--CCCCCHHHHHHHHH--HHCCCE
T ss_conf 87------999599999814988999889945471767166644199999298958--99997999999999--978997
Q ss_pred EEEEEEEEECCCCCCCCCCCCCEEEEEEEECC--CCCCHHHHHHHCCCEEEE
Q ss_conf 99999999189984357897626999999449--987388899885981443
Q 001725 914 FRALVEERDSSGGKLKGQGTGTLLHVTLVAVD--AEISINTLMVQEGLARVE 963 (1020)
Q Consensus 914 l~a~V~~~~~~~~~v~~~~~~~~~~V~L~~~~--~~~sIn~~LV~~GlA~~~ 963 (1020)
+.++|..... +.++|+|++.+ .+.+||+.||++|||..+
T Consensus 160 l~~~V~~~~~-----------~~~~V~L~d~~~~~~~~I~~~Lv~~gLA~kc 200 (201)
T 4b9w_A 160 LQARVVEITA-----------NGVGVELTDLSTPYPKIISDVLIREQLVLRC 200 (201)
T ss_dssp EEEEEEEEET-----------TEEEEEEEECSSSSCEEHHHHHHHTTSSEEC
T ss_pred EEEEEEEEEC-----------CEEEEEEEECCCCCCCCHHHHHHHCCCEECC
T ss_conf 9999999969-----------9789999998999965569999877684015
No 7
>3ntk_A Maternal protein tudor; tudor domain, OB-fold, GERM cell formation, transcription; 1.80A {Drosophila melanogaster} PDB: 3nth_A* 3nti_A*
Probab=1.00 E-value=1 Score=239.83 Aligned_cols=164 Identities=23% Similarity=0.324 Sum_probs=142.0
Q ss_pred CEEEEEEEEEECCCEEEEEECCC-HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEEEECCCCCC
Q ss_conf 29999999996098499997581-56999999999987028999888898679969999768993799999852366523
Q 001725 762 EVLKVVVTEILGGGKFYVQQVGD-QKVASVQQQLASLNLQEAPVIGAFNPKKGEIVLAQFSADNSWNRAMIVNAPREKVE 840 (1020)
Q Consensus 762 ~~~~V~Vt~V~sp~~Fyvq~~~~-~~l~~L~e~L~~~~~~~~p~~~~~~p~~G~~caA~fs~D~~WYRA~V~~~~~~~~~ 840 (1020)
++++|+||+|.||++||+|..++ ..|++||++|+.++.. .|. ...|++|++|+|+|++|+.||||+|+++.
T Consensus 2 e~~~V~Vt~v~~p~~F~vq~~~~~~~L~~L~~~l~~~~~~-~p~--~~~~~~G~~c~A~~~~d~~wyRa~I~~~~----- 73 (169)
T 3ntk_A 2 ELHNCVVVQFDGPMSFYVQMESDVPALEQMTDKLLDAEQD-LPA--FSDLKEGALCVAQFPEDEVFYRAQIRKVL----- 73 (169)
T ss_dssp CCEEEEEEEEEETTEEEEEEGGGHHHHHHHHHHHHHHGGG-CCB--CCCCCTTCEEEEEETTTTEEEEEEEEEEC-----
T ss_pred CCEEEEEEEEECCCEEEEEECCCHHHHHHHHHHHHHHHHC-CCC--CCCCCCCCEEEEEECCCCCEEEEEEEEEC-----
T ss_conf 5058999999689979999879779999999999878851-898--77899899999998789969999999977-----
Q ss_pred CCCCEEEEEEEECCCCEEECCCCCCCCCCCCCCCCCCEEEEEECCEECCCCCCCCHHHHHHHHHHCCCCCCCEEEEEEEE
Q ss_conf 46978999997628820003888214893236999840899966413299999990999999942123479889999999
Q 001725 841 SVNDKFEVFYIDYGNQELVPYNKLRPIDPSLSSTPPLAQLCSLAYIKIPALEDEYGPEAAEFLNEHTYNSSNEFRALVEE 920 (1020)
Q Consensus 841 ~~~~~v~V~fIDyGn~e~V~~~~Lr~Lp~~f~~lP~qA~~c~La~V~p~~~~~~w~~eA~~~l~~~llv~gk~l~a~V~~ 920 (1020)
..+.+.|+||||||++. .++||+||++|+.+|+||++|+|++|+|+.. +.+|..+|++ ++.|+.+.++|.+
T Consensus 74 -~~~~~~V~fvDyGn~~~--v~~lr~l~~~f~~lP~qA~~c~L~~v~~~~~----~~ea~~~f~~--l~~~k~l~~~V~~ 144 (169)
T 3ntk_A 74 -DDGKCEVHFIDFGNNAV--TQQFRQLPEELAKPARYSRHCELDASTISKC----DAALLQSFID--TRFSETFQVEILA 144 (169)
T ss_dssp -STTCEEEEETTTTEEEE--ESCEECCCHHHHSSCCSSEEEEECGGGSCHH----HHHHHHHHHH--TTTTSEEEEEEEE
T ss_pred -CCCEEEEEEEECCCEEE--HHHHHCCCHHHHHCCCEEEEEEECCCCCCCC----HHHHHHHHHH--HHCCCEEEEEEEE
T ss_conf -99979999994499698--1344434787750780059999898198999----0999999999--8679859999999
Q ss_pred EECCCCCCCCCCCCCEEEEEEEECCCCCCHHHHH
Q ss_conf 9189984357897626999999449987388899
Q 001725 921 RDSSGGKLKGQGTGTLLHVTLVAVDAEISINTLM 954 (1020)
Q Consensus 921 ~~~~~~~v~~~~~~~~~~V~L~~~~~~~sIn~~L 954 (1020)
... +..+.|+|+++ +.+||+.|
T Consensus 145 ~~~----------~~~~~V~L~~~--~~~in~~L 166 (169)
T 3ntk_A 145 TKG----------TGTHVVRLFYQ--SKNISEKL 166 (169)
T ss_dssp ECT----------TSCEEEEEEET--TEEHHHHC
T ss_pred ECC----------CCCEEEEEEEC--CCCHHHHH
T ss_conf 159----------98789999979--99788985
No 8
>4eqp_A Thermonuclease; staphylococcal nuclease, hyperstable, PDTP, ionizable group, hydrolase; HET: THP; 1.35A {Staphylococcus aureus} PDB: 3ero_A* 2rbm_A* 3d8g_A* 3bdc_A* 4f8m_A* 3lx0_A* 3nqt_A* 3nk9_A* 3pmf_A* 3sr1_A* 3t13_A* 3mxp_A* 3r3o_A* 4df7_A* 3np8_A* 3nxw_A* 3oso_A* 3mz5_A* 3mhb_A* 3dhq_A* ...
Probab=1.00 E-value=1 Score=198.54 Aligned_cols=134 Identities=22% Similarity=0.224 Sum_probs=115.6
Q ss_pred CCCCCCEEEEEEEEECCCCEEEEEECCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCC-CCEEEEE
Q ss_conf 778998088999697369868995189999999970499998015889898899996449999999997617-9969999
Q 001725 5 AAAGGGWYRARVKAVPSGDSLVITALSNPNPGPPREKTLTLSSIITPRLARRGGLDEPFAWDSREFLRKLCI-GKEVTFR 83 (1020)
Q Consensus 5 ~~~~~~~~~~~V~~V~sGDTi~v~~~~~~~~g~~~~~~vrL~~IdaP~~~~~~~~~ep~a~eAre~Lr~~l~-Gk~V~~~ 83 (1020)
+...-..+.++|+.|+|||||.|...+ ...+|||+||||||+ .||||.+|++||++++. |+.|.+.
T Consensus 3 ~~~~~~~~~~~V~~V~DGDTi~v~~~g-------~~~~VRL~gIDaPE~------~q~~g~~A~~~l~~ll~~g~~V~~~ 69 (143)
T 4eqp_A 3 STKKLHKEPATLIKAIDGDTVKLMYKG-------QPMTFRLLLVDTPEF------NEKYGPEASAFTKKMVENAKKDEVE 69 (143)
T ss_dssp ----CCEEEEEEEEECSSSEEEEEETT-------EEEEEEETTEECCCT------TSTTHHHHHHHHHHHHHHCSCEEEE
T ss_pred CCCCCCEEEEEEEEEECCCEEEEEECC-------CEEEEEEEEECCCCC------CCCHHHHHHHHHHHHHHCCCEEEEE
T ss_conf 677774046999999789999998599-------089999986638976------8956999999999998639818999
Q ss_pred EC--EECCCCCCEEEEEEECCCCHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 91--103799937999993992288899773988999817867999046999999999999809996679988
Q 001725 84 VD--YAVPNIGREFGTVILGDKNVAMLVVSEGWAKVKEQGSQKGEASPFLAELLRLEEQAKLQGLGRWSKVPG 154 (1020)
Q Consensus 84 ~~--~~~~~~gR~~g~v~~~g~~i~~~lv~~G~A~v~~~~~~~~~~~~~~~~l~~ae~~Ak~~k~GiWs~~~~ 154 (1020)
++ ...|+|||.+|+||++|.+||++||++|||+++..+. ....+.+.|..||++||++++|||+...+
T Consensus 70 ~d~~~~~D~ygR~la~v~~~g~~vn~~lv~~GlA~v~~~~~---~~~~~~~~~~~aE~~Ar~~k~GlW~~~~p 139 (143)
T 4eqp_A 70 FDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAYVYK---GNNTHEQLLRKAEAQAKKEKLNIWSEDNA 139 (143)
T ss_dssp CCSSCSBCTTSCEEEEEEETTEEHHHHHHHTTSSEECCCCT---TSCTTHHHHHHHHHHHHHTTCGGGC----
T ss_pred ECCCCCCCCCCCEEEEEEECCCHHHHHHHHCCCEEEEEECC---CCCCHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 85565647789899999999955899999879868976518---88316999999999999857898999999
No 9
>4eqp_A Thermonuclease; staphylococcal nuclease, hyperstable, PDTP, ionizable group, hydrolase; HET: THP; 1.35A {Staphylococcus aureus} PDB: 3ero_A* 2rbm_A* 3d8g_A* 3bdc_A* 4f8m_A* 3lx0_A* 3nqt_A* 3nk9_A* 3pmf_A* 3sr1_A* 3t13_A* 3mxp_A* 3r3o_A* 4df7_A* 3np8_A* 3nxw_A* 3oso_A* 3mz5_A* 3mhb_A* 3dhq_A* ...
Probab=1.00 E-value=1 Score=172.19 Aligned_cols=129 Identities=23% Similarity=0.360 Sum_probs=109.6
Q ss_pred CCCCEEEEEECCCCEEEEEECCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCC
Q ss_conf 95228999961699999997289618999972210798889998544686544578732000025212678875200247
Q 001725 186 RPMQGIVEQARDGSTLRVYLLPEFQFVQVFVAGIQAPAVARRPAAIVDTDTEETNGDVSAAEAVAPLNSAQRLAASTASA 265 (1020)
Q Consensus 186 ~~~~~~Ve~V~dG~t~~v~l~~~~~~~~v~l~Gi~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (1020)
...++.|.+|+|||||+|.. +++.++|||+||+|||+
T Consensus 8 ~~~~~~V~~V~DGDTi~v~~--~g~~~~VRL~gIDaPE~----------------------------------------- 44 (143)
T 4eqp_A 8 HKEPATLIKAIDGDTVKLMY--KGQPMTFRLLLVDTPEF----------------------------------------- 44 (143)
T ss_dssp CEEEEEEEEECSSSEEEEEE--TTEEEEEEETTEECCCT-----------------------------------------
T ss_pred CEEEEEEEEEECCCEEEEEE--CCCEEEEEEEEECCCCC-----------------------------------------
T ss_conf 40469999997899999985--99089999986638976-----------------------------------------
Q ss_pred CCCCCCCHHHHHHHHHHHHHCC-CCEEEEEE---EEECCCCCEEEEEEECCCCCHHHHHHHHHHCCCEEEE-ECCCCCCH
Q ss_conf 9999983359999999997715-95699999---4436889789999966998746799999862758987-32665442
Q 001725 266 GQQSTDEPFALDAKYFTEMRVL-NREVRIVL---EGVDKFKNLIGSVFYPDGETAKDLAMELVENGLAKYI-EWSANMME 340 (1020)
Q Consensus 266 ~~~~~~ep~a~eAk~f~~~~ll-~r~V~i~~---~~~d~~g~~~g~v~~~~g~~~~di~~~Ll~~Gla~~~-~~~~~~~~ 340 (1020)
.+|||.+|+.|++.+|+ ++.|.+.+ .+.|+|||++|+||. +|. ||+++||++|||+++ .+..+. .
T Consensus 45 -----~q~~g~~A~~~l~~ll~~g~~V~~~~d~~~~~D~ygR~la~v~~-~g~---~vn~~lv~~GlA~v~~~~~~~~-~ 114 (143)
T 4eqp_A 45 -----NEKYGPEASAFTKKMVENAKKDEVEFDKGQRTDKYGRGLAYIYA-DGK---MVNEALVRQGLAKVAYVYKGNN-T 114 (143)
T ss_dssp -----TSTTHHHHHHHHHHHHHHCSCEEEECCSSCSBCTTSCEEEEEEE-TTE---EHHHHHHHTTSSEECCCCTTSC-T
T ss_pred -----CCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCEEEEEEE-CCC---HHHHHHHHCCCEEEEEECCCCC-C
T ss_conf -----89569999999999986398189998556564778989999999-995---5899999879868976518883-1
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 79999999999999880555666778999
Q 001725 341 EDAKRRLKAADLQAKKTRLRMWTNYVPPQ 369 (1020)
Q Consensus 341 ~~~~~~l~~ae~~Ak~~k~g~W~~~~~~~ 369 (1020)
+...|.+||++||++|+|||....|++
T Consensus 115 --~~~~~~~aE~~Ar~~k~GlW~~~~p~~ 141 (143)
T 4eqp_A 115 --HEQLLRKAEAQAKKEKLNIWSEDNADS 141 (143)
T ss_dssp --THHHHHHHHHHHHHTTCGGGC------
T ss_pred --HHHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf --699999999999985789899999998
No 10
>2diq_A Tudor and KH domain-containing protein; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=1.00 E-value=1 Score=170.75 Aligned_cols=100 Identities=23% Similarity=0.442 Sum_probs=89.9
Q ss_pred CHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEEEECCCCCCCCCCEEEEEEEECCCCEEECCCC
Q ss_conf 15699999999998702899988889867996999976899379999985236652346978999997628820003888
Q 001725 784 DQKVASVQQQLASLNLQEAPVIGAFNPKKGEIVLAQFSADNSWNRAMIVNAPREKVESVNDKFEVFYIDYGNQELVPYNK 863 (1020)
Q Consensus 784 ~~~l~~L~e~L~~~~~~~~p~~~~~~p~~G~~caA~fs~D~~WYRA~V~~~~~~~~~~~~~~v~V~fIDyGn~e~V~~~~ 863 (1020)
...|++||++|++++....+ .++.|++|++|+|+|++|+.||||+|+++. ..+.+.|+||||||++.|+.++
T Consensus 9 ~~~l~~L~~~m~~~y~~~~~--~~~~~~~G~~c~a~~~~d~~wyRA~V~~~~------~~~~~~V~fvDyGn~e~v~~~~ 80 (110)
T 2diq_A 9 SLQLDKLVNEMTQHYENSVP--EDLTVHVGDIVAAPLPTNGSWYRARVLGTL------ENGNLDLYFVDFGDNGDCPLKD 80 (110)
T ss_dssp CHHHHHHHHHHHHHHTTSCC--CCCCCCTTCEEEECCTTTCSCEEEEECCCC------SSSCEEEEETTTCCEEEECGGG
T ss_pred HHHHHHHHHHHHHHHCCCCC--CCCCCCCCCEEEEEECCCCEEEEEEEEEEC------CCCEEEEEEEECCCEEEEEHHH
T ss_conf 89999999999999824899--877898799999998789959999999988------9995999999379859986499
Q ss_pred CCCCCCCCCCCCCCEEEEEECCEECCCC
Q ss_conf 2148932369998408999664132999
Q 001725 864 LRPIDPSLSSTPPLAQLCSLAYIKIPAL 891 (1020)
Q Consensus 864 Lr~Lp~~f~~lP~qA~~c~La~V~p~~~ 891 (1020)
||+|+++|+.+|+||++|+|++|+|...
T Consensus 81 Lr~l~~~f~~lP~qA~~c~L~~v~p~~~ 108 (110)
T 2diq_A 81 LRALRSDFLSLPFQAIECSLARIASGPS 108 (110)
T ss_dssp CEECCHHHHSSCCSSCCSCSSCSCCSCC
T ss_pred HHCCCHHHHCCCCCEEEEEECCEEECCC
T ss_conf 5507597727894409999998598999
Done!